HHsearch results for GI: 254780788 and protein with PDBid: 2je6_I
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=96.84 E-value=0.0026 Score=41.94 Aligned_cols=70 Identities=24% Similarity=0.287 Sum_probs=56.3
Q ss_pred HHHHHCCCEEEEEEEECCCCEEEEEECC-CEEEEEHHHCC---------CCCCCCCCCEEEEEEEEECCCCCEEEEEEEC
Q ss_conf 9985208389999984057638999579-35874478748---------8751152766999997611358702898715
Q gi|254780788|r 133 EFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETI---------SRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 (526)
Q Consensus 133 ef~~r~Geiv~G~V~r~e~~~iiVdlg~-~ea~Lp~~e~i---------p~E~~~~Gdrika~i~~V~~~~rgpqi~lSR 202 (526)
.|..++|++|.|.|..+....+.||+|. ..|+||..+.- .+..|++||-|.|-|..+... ..+.||-
T Consensus 69 ~Y~P~vGDiVIG~V~~v~~~~~~VdI~s~~~a~L~~~~~~~~~~~~~~~~r~~l~~GDlV~ArV~~v~~~---~~~~Ls~ 145 (251)
T 2je6_I 69 FYYPKINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDRS---IDPVLSV 145 (251)
T ss_dssp CCCCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEETT---EEEEEEC
T ss_pred CCCCCCCCEEEEEEEEEECCEEEEECCCCCCEEEEHHHCCCCCCCCHHHHHHHCCCCCEEEEEEEEECCC---CCEEEEE
T ss_conf 6678899989999998616679998489841583667735754011165896479999999999995588---8669985
Q ss_pred CCH
Q ss_conf 988
Q gi|254780788|r 203 THP 205 (526)
Q Consensus 203 t~p 205 (526)
..+
T Consensus 146 ~~~ 148 (251)
T 2je6_I 146 KGK 148 (251)
T ss_dssp CST
T ss_pred CCC
T ss_conf 378