HHsearch results for GI: 254780788 and protein with PDBid: 2kwp_A
>2kwp_A Transcription elongation protein NUSA; NMR {Escherichia coli}
Probab=100.00 E-value=3.2e-33 Score=261.81 Aligned_cols=128 Identities=37% Similarity=0.570 Sum_probs=125.2
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCEECHHHH
Q ss_conf 88999999999986239999999999999999999613687453599974998839999998851767787532348999
Q gi|254780788|r 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVA 84 (526)
Q Consensus 5 ~~~ell~vie~va~EK~I~~e~i~~aie~Al~~a~kK~~~~~~~i~V~iD~~tG~i~i~~~~~VVedved~~~eI~l~~A 84 (526)
+|.|||.+++++|+||||+++.++++|++||.+||||+||.+.+++|.||++||++++|+.|.||++++++..+|+|++|
T Consensus 1 M~~eil~al~~la~EKgI~~e~l~~ale~Al~~A~kK~~g~~~~~~V~iD~~tG~i~v~~~~~VVe~~e~~~~eI~l~eA 80 (129)
T 2kwp_A 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVDEVTQPTKEITLEAA 80 (129)
T ss_dssp CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCSCCCEEEEEETTTTEEEEEEEEEEETTCSCTTTEEEHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCHHHH
T ss_conf 97899999999998729999999999999999999870599764799996789959999999970687665433548888
Q ss_pred HHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 862889864737998508456207999999999999999999887799
Q gi|254780788|r 85 RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYL 132 (526)
Q Consensus 85 ~~~~~~~~iGD~i~~~i~~~~fgRiaAq~AKQvI~QkireaEr~~i~~ 132 (526)
++++|++++||++..+++|.+|||+|||+|||+|.||+|++||+.+|+
T Consensus 81 ~~~d~~~~vGd~~~~~~~~~~fgRiAaq~AkQvi~QkiRe~Ere~i~~ 128 (129)
T 2kwp_A 81 RYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMLVP 128 (129)
T ss_dssp HHHHTTCCTTCEEEEECCCCCGGGSCHHHHHHHHHHHHHHHHHCCSSC
T ss_pred HHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 752567766877887027688388999999999999999999998854