HHsearch results for GI: 254780788 and protein with PDBid: 2nn6_G
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=96.13 E-value=0.02 Score=35.41 Aligned_cols=81 Identities=19% Similarity=0.231 Sum_probs=61.0
Q ss_pred HHHHHHCCCEEEEEEEECCCCEEEEEECC-CEEEEEHHHC-----CCCCCCCCCCEEEEEEEEECCCCCEEE--------
Q ss_conf 99985208389999984057638999579-3587447874-----887511527669999976113587028--------
Q gi|254780788|r 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDET-----ISRENLRPGDRVKSYIYDVRREQRGPQ-------- 197 (526)
Q Consensus 132 ~ef~~r~Geiv~G~V~r~e~~~iiVdlg~-~ea~Lp~~e~-----ip~E~~~~Gdrika~i~~V~~~~rgpq-------- 197 (526)
..|..++|++|.|+|..+..+.+.||+|. ..|+||...- --+.+|++||-|-|-|..+.++.. |.
T Consensus 121 kRY~P~~GD~VIGiV~~~~~d~w~VDIgs~~~A~L~~~aF~gatkrnRp~L~vGDlVyArV~~v~~d~e-~eLsCvd~~~ 199 (289)
T 2nn6_G 121 KRYVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANKDME-PEMVCIDSCG 199 (289)
T ss_dssp SSCCCCSSEEEEEEEEEEETTEEEEECSSSSCCCEESCSSSCCSSCSSSSSCTTCEEEEEEEECCTTSC-CEEECSBTTT
T ss_pred CCCCCCCCCEEEEEEEEECCCEEEEECCCCCCEEECHHHCCCHHHHCCCCCCCCCEEEEEEEEECCCCC-EEEEEECCCC
T ss_conf 766899999999999897186289974897533862343775344356558999889999999458996-6899754777
Q ss_pred -----------EEEECCCHHHHHHHHH
Q ss_conf -----------9871598899999999
Q gi|254780788|r 198 -----------VLLSRTHPQFMVKLFH 213 (526)
Q Consensus 198 -----------i~lSRt~p~~l~~Lf~ 213 (526)
=+|-+.+|.++++|..
T Consensus 200 k~~g~G~L~~~G~l~~Vs~~lvrrLl~ 226 (289)
T 2nn6_G 200 RANGMGVIGQDGLLFKVTLGLIRKLLA 226 (289)
T ss_dssp TBCCCCSCCSSCEEECCCHHHHHHHHC
T ss_pred CCCCCCCCCCCEEEEEECCHHCCCEEC
T ss_conf 424666134787999987343200204