HHsearch results for GI: 254780788 and protein with PDBid: 2nn6_H
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=94.03 E-value=0.034 Score=33.76 Aligned_cols=71 Identities=23% Similarity=0.308 Sum_probs=53.3
Q ss_pred HHHHHCCCEEEEEEEECCCCEEEEEECC-CEEEEEHH-------HCCC---------CCCCCCCCEEEEEEEEECCCCCE
Q ss_conf 9985208389999984057638999579-35874478-------7488---------75115276699999761135870
Q gi|254780788|r 133 EFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRD-------ETIS---------RENLRPGDRVKSYIYDVRREQRG 195 (526)
Q Consensus 133 ef~~r~Geiv~G~V~r~e~~~iiVdlg~-~ea~Lp~~-------e~ip---------~E~~~~Gdrika~i~~V~~~~rg 195 (526)
.|..++|++|.|.|.++....+.||++. ..|+||-+ ++.. ++.|++||-|.|-|..+....
T Consensus 90 rY~P~vGDiVIGrV~~V~~~~w~VDI~S~~~A~L~ls~v~lpg~~~rrr~~~D~~~mr~~f~~GDlV~ArV~sv~~d~-- 167 (308)
T 2nn6_H 90 RYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDG-- 167 (308)
T ss_dssp CCCCCSSBCCCEEEEEEETTEEEEECSSSSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEETTT--
T ss_pred CCCCCCCCEEEEEEEEEECCEEEEECCCCCCCEECCCCCCCCCCHHCCCCCCCHHHHHHCCCCCCEEEEEEEEECCCC--
T ss_conf 436988999999998860545999818975634334301266611037675422568741788989999999826889--
Q ss_pred EEEEEECCCHH
Q ss_conf 28987159889
Q gi|254780788|r 196 PQVLLSRTHPQ 206 (526)
Q Consensus 196 pqi~lSRt~p~ 206 (526)
.+.||-.++.
T Consensus 168 -~i~Lttr~~~ 177 (308)
T 2nn6_H 168 -AVSLHTRSLK 177 (308)
T ss_dssp -EEEEECCSST
T ss_pred -CEEEEECCCC
T ss_conf -7699844778