HHsearch results for GI: 254780788 and protein with PDBid: 2qnd_A
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I KH domains, fragIle X mental retardation protein, RNA binding protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=95.53 E-value=0.00029 Score=48.99 Aligned_cols=87 Identities=20% Similarity=0.266 Sum_probs=58.4
Q ss_pred CCEEEEECCCCHHHHHHHHHHCCCC---------EEEEECCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEECCCCCCC
Q ss_conf 8127655488621788998627782---------6799559878999997628665424898756787999985342211
Q gi|254780788|r 249 DPVGACVGMRGSRVQAVVTELRDEK---------IDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSL 319 (526)
Q Consensus 249 DpVGAcVG~rGsRiq~I~~EL~gEk---------IDii~ws~d~~~fi~nAl~PA~v~~v~~de~~~~~~v~v~~~qls~ 319 (526)
+-+|.++|.+|+.|+.|.++.+-.. +-|.-.+.+...-....+. .....+.||......
T Consensus 13 ~~vg~iIGk~G~~Ik~i~~~tg~~~~~~~~~~~~~~I~g~~~~~v~~~~~~~~------------~~~~~i~Vp~~~~g~ 80 (144)
T 2qnd_A 13 DLMGLAIGTHGANIQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARSFLE------------FAEDVIQVPRNLVGK 80 (144)
T ss_dssp GGHHHHHCGGGHHHHHHHTSTTEEEEEEETTTTEEEEEESSHHHHHHHHHHHC------------EEEEEEEEEGGGHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHCCCCEEECCCCCCCEEEECCCHHHHHHHHHHCC------------CEEEEECCCHHHHCC
T ss_conf 88735579562889999997199447615888725997487888788887423------------414775157777343
Q ss_pred CCCCCHHHHHHHHHHHCC-EEEEEECCCH
Q ss_conf 025442789999986167-4578552200
Q gi|254780788|r 320 AIGRRGQNVRLASQLTGW-TIDIITEEED 347 (526)
Q Consensus 320 AIGk~GqNvrLas~Ltg~-~idi~~~~~~ 347 (526)
.||++|.|+|--..-||- .+-+....+.
T Consensus 81 iIG~~G~~I~~I~~~tG~~~i~i~~~~~~ 109 (144)
T 2qnd_A 81 VIGKNGKLIQEIVDKSGVVRVRIEAENEK 109 (144)
T ss_dssp HHCGGGHHHHHHHHHHTCSEEEEEEECTT
T ss_pred CCCCCCHHHHHHHHHHCCEEEEECCCCCC
T ss_conf 02556426999999769869996588888