HHsearch results for GI: 254780788 and protein with PDBid: 3aev_A
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=97.95 E-value=0.0001 Score=52.39 Aligned_cols=78 Identities=22% Similarity=0.321 Sum_probs=64.1
Q ss_pred HHCCCEEEEEEEECCCCEEEEEEC---CCEEEEEHHHCCC------CCCCCCCCEEEEEEEEECCCCCEEEEEEECCCHH
Q ss_conf 520838999998405763899957---9358744787488------7511527669999976113587028987159889
Q gi|254780788|r 136 DKVGEIISGTVKRVEYGNVIVDLG---NSDGVIRRDETIS------RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQ 206 (526)
Q Consensus 136 ~r~Geiv~G~V~r~e~~~iiVdlg---~~ea~Lp~~e~ip------~E~~~~Gdrika~i~~V~~~~rgpqi~lSRt~p~ 206 (526)
..+|++|.|+|.++...+++|+|+ +.+|++|.+|.-. ++.|++|+++.|.|..|+...+.-.+-+-|..++
T Consensus 9 Pe~G~~V~g~V~~I~~~GafV~l~e~~gieGli~~Seis~~~v~~~~~~~k~Gq~v~~kVl~vd~~~~~i~LSlk~v~~~ 88 (275)
T 3aev_A 9 PEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLSLRRVTQQ 88 (275)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESTTCCHH
T ss_pred CCCCCEEEEEEEEEECCEEEEEECCCCCCEEEEEHHHCCCCCCCCHHHHCCCCCEEEEEEEECCCCCCCEEECCCCCCCC
T ss_conf 99999999999999724189997367994799898987874204988837899989999974257761112024556758
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780788|r 207 FMVKLFH 213 (526)
Q Consensus 207 ~l~~Lf~ 213 (526)
--....+
T Consensus 89 ~~~~~~~ 95 (275)
T 3aev_A 89 QRKAKLQ 95 (275)
T ss_dssp HHHHHHH
T ss_pred CHHHHHH
T ss_conf 4888998