HHsearch results for GI: 254780788 and protein with PDBid: 3bzc_A
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=96.83 E-value=0.00069 Score=46.25 Aligned_cols=197 Identities=15% Similarity=0.218 Sum_probs=87.8
Q ss_pred EECCCCCEE--EEEEEECCCCCCCEEEEECCCCHH------HHHHHHHHCCCCEEEEECC-----CCHHHHHHHHC---C
Q ss_conf 631677503--499994089988127655488621------7889986277826799559-----87899999762---8
Q gi|254780788|r 229 VSRDPGSRA--KLAVFSSDSSIDPVGACVGMRGSR------VQAVVTELRDEKIDIVVWS-----PDSATFVINAL---R 292 (526)
Q Consensus 229 iaR~pG~Rs--KIAV~s~d~~iDpVGAcVG~rGsR------iq~I~~EL~gEkIDii~ws-----~d~~~fi~nAl---~ 292 (526)
.+-+||.|+ |+||.+.+.++=-.+. +.+-+.+ ...+.+=+..-++++|--. -....|+..-+ .
T Consensus 332 lg~dPg~r~g~k~a~vD~~G~vld~~~-iyp~~~~~~~~~a~~~l~~li~~~~~~vIaIGngtasrete~~v~~li~~~~ 410 (785)
T 3bzc_A 332 LGLDPGLRTGVKVAVVDATGKLLDTAT-VYPHAPKNQWDQTLAVLAALCAKHQVELIAIGNGTASRETDKLAGELIKKYP 410 (785)
T ss_dssp EEEECCSSSCEEEEEECTTSCEEEEEE-ECCSGGGCCHHHHHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHHHCG
T ss_pred EEECCCCCCCEEEEEECCCCCEEEEEE-ECCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHCC
T ss_conf 554789877359999989998787679-7468974235999999999999829968997686387899999999998565
Q ss_pred CCCCCEEEECCCCC-------EEEEEECCCCCC----CCCCCCHHHHHHHHHHHCCEEEEEECCCHHHHHHCCCCCCCCC
Q ss_conf 66542489875678-------799998534221----1025442789999986167457855220011010012210001
Q gi|254780788|r 293 PAIVTKVVLDEDVG-------RIEVIVPKEQLS----LAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 (526)
Q Consensus 293 PA~v~~v~~de~~~-------~~~v~v~~~qls----~AIGk~GqNvrLas~Ltg~~idi~~~~~~~~~~~~e~~~~~~~ 361 (526)
+-.|.-++++|..- .+.--.|+-+.+ .+|||+=||- .+.|..-.+.-++..++.. ... ...
T Consensus 411 ~~~v~~~~V~E~gAsvYsaS~~A~~EfPdld~~~R~AVSIaRrlQDP--LaElvkidp~sigvg~yQh----dv~--q~~ 482 (785)
T 3bzc_A 411 GMKLTKIMVSEAGASVYSASELAAKEFPELDVSLRGAVSIARRLQDP--LAELVKIEPKSIGVGQYQH----DVS--QLK 482 (785)
T ss_dssp GGCCEEEEECCHHHHHHHHSHHHHHHCTTSCHHHHHHHHHHHHHHCH--HHHHTTSCGGGGTCSTTGG----GSC--HHH
T ss_pred CCCCEEEEECCHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHCCH--HHHHHHCCHHHCCCCCCCC----CCC--HHH
T ss_conf 77864898332026776438998855726880156888778763086--9999722964341127644----137--999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCC
Q ss_conf 11225888467888877321114777505888877653058899999999999999999999898775428435664077
Q gi|254780788|r 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIP 441 (526)
Q Consensus 362 f~e~LdVDE~iA~~LV~eGf~SiEeIa~a~~eeL~~IeGfdee~a~eL~~rA~~~L~~~~~~~~e~~~e~~~~e~L~~l~ 441 (526)
|.+.|+ ..+-...-.-|. +|-.|+..=|.-+.|+..-.|..|...-. .-.......+|+.++
T Consensus 483 L~~~L~--~vv~~~VN~VGV----DiN~As~~lL~~VsGLgprkA~~iv~~r~------------~~g~f~~R~~L~~v~ 544 (785)
T 3bzc_A 483 LARSLD--AVVEDCVNAVGV----DVNTASAALLARISGLNSTLAQNIVAHRD------------ANGAFRTRDELKKVS 544 (785)
T ss_dssp HHHHHH--HHHHHHHHHHCE----ETTTCCHHHHHTSTTCCHHHHHHHHHHHH------------HHCCCSSGGGGGGST
T ss_pred HHHHHH--HHHHHHHHCCCE----EHHHHHHHHHHCCCCCCHHHHHHHHHHHH------------HCCCCCCHHHHHHCC
T ss_conf 999999--999978404556----18861477753257878899999999999------------579957799997367
Q ss_pred CCCHHHHHHHH
Q ss_conf 99989999999
Q gi|254780788|r 442 GIDSKIKVALG 452 (526)
Q Consensus 442 gl~~~~~~~L~ 452 (526)
+|++......+
T Consensus 545 ~lG~k~F~q~A 555 (785)
T 3bzc_A 545 RLGEKTFEQAA 555 (785)
T ss_dssp TCCHHHHHHHG
T ss_pred CCCHHHHHHCC
T ss_conf 86602176525