HHsearch results for GI: 254780788 and protein with PDBid: 3bzc_A

>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=96.83  E-value=0.00069  Score=46.25  Aligned_cols=197  Identities=15%  Similarity=0.218  Sum_probs=87.8

Q ss_pred             EECCCCCEE--EEEEEECCCCCCCEEEEECCCCHH------HHHHHHHHCCCCEEEEECC-----CCHHHHHHHHC---C
Q ss_conf             631677503--499994089988127655488621------7889986277826799559-----87899999762---8
Q gi|254780788|r  229 VSRDPGSRA--KLAVFSSDSSIDPVGACVGMRGSR------VQAVVTELRDEKIDIVVWS-----PDSATFVINAL---R  292 (526)
Q Consensus       229 iaR~pG~Rs--KIAV~s~d~~iDpVGAcVG~rGsR------iq~I~~EL~gEkIDii~ws-----~d~~~fi~nAl---~  292 (526)
                      .+-+||.|+  |+||.+.+.++=-.+. +.+-+.+      ...+.+=+..-++++|--.     -....|+..-+   .
T Consensus       332 lg~dPg~r~g~k~a~vD~~G~vld~~~-iyp~~~~~~~~~a~~~l~~li~~~~~~vIaIGngtasrete~~v~~li~~~~  410 (785)
T 3bzc_A          332 LGLDPGLRTGVKVAVVDATGKLLDTAT-VYPHAPKNQWDQTLAVLAALCAKHQVELIAIGNGTASRETDKLAGELIKKYP  410 (785)
T ss_dssp             EEEECCSSSCEEEEEECTTSCEEEEEE-ECCSGGGCCHHHHHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHHHCG
T ss_pred             EEECCCCCCCEEEEEECCCCCEEEEEE-ECCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHCC
T ss_conf             554789877359999989998787679-7468974235999999999999829968997686387899999999998565


Q ss_pred             CCCCCEEEECCCCC-------EEEEEECCCCCC----CCCCCCHHHHHHHHHHHCCEEEEEECCCHHHHHHCCCCCCCCC
Q ss_conf             66542489875678-------799998534221----1025442789999986167457855220011010012210001
Q gi|254780788|r  293 PAIVTKVVLDEDVG-------RIEVIVPKEQLS----LAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF  361 (526)
Q Consensus       293 PA~v~~v~~de~~~-------~~~v~v~~~qls----~AIGk~GqNvrLas~Ltg~~idi~~~~~~~~~~~~e~~~~~~~  361 (526)
                      +-.|.-++++|..-       .+.--.|+-+.+    .+|||+=||-  .+.|..-.+.-++..++..    ...  ...
T Consensus       411 ~~~v~~~~V~E~gAsvYsaS~~A~~EfPdld~~~R~AVSIaRrlQDP--LaElvkidp~sigvg~yQh----dv~--q~~  482 (785)
T 3bzc_A          411 GMKLTKIMVSEAGASVYSASELAAKEFPELDVSLRGAVSIARRLQDP--LAELVKIEPKSIGVGQYQH----DVS--QLK  482 (785)
T ss_dssp             GGCCEEEEECCHHHHHHHHSHHHHHHCTTSCHHHHHHHHHHHHHHCH--HHHHTTSCGGGGTCSTTGG----GSC--HHH
T ss_pred             CCCCEEEEECCHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHCCH--HHHHHHCCHHHCCCCCCCC----CCC--HHH
T ss_conf             77864898332026776438998855726880156888778763086--9999722964341127644----137--999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCC
Q ss_conf             11225888467888877321114777505888877653058899999999999999999999898775428435664077
Q gi|254780788|r  362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIP  441 (526)
Q Consensus       362 f~e~LdVDE~iA~~LV~eGf~SiEeIa~a~~eeL~~IeGfdee~a~eL~~rA~~~L~~~~~~~~e~~~e~~~~e~L~~l~  441 (526)
                      |.+.|+  ..+-...-.-|.    +|-.|+..=|.-+.|+..-.|..|...-.            .-.......+|+.++
T Consensus       483 L~~~L~--~vv~~~VN~VGV----DiN~As~~lL~~VsGLgprkA~~iv~~r~------------~~g~f~~R~~L~~v~  544 (785)
T 3bzc_A          483 LARSLD--AVVEDCVNAVGV----DVNTASAALLARISGLNSTLAQNIVAHRD------------ANGAFRTRDELKKVS  544 (785)
T ss_dssp             HHHHHH--HHHHHHHHHHCE----ETTTCCHHHHHTSTTCCHHHHHHHHHHHH------------HHCCCSSGGGGGGST
T ss_pred             HHHHHH--HHHHHHHHCCCE----EHHHHHHHHHHCCCCCCHHHHHHHHHHHH------------HCCCCCCHHHHHHCC
T ss_conf             999999--999978404556----18861477753257878899999999999------------579957799997367


Q ss_pred             CCCHHHHHHHH
Q ss_conf             99989999999
Q gi|254780788|r  442 GIDSKIKVALG  452 (526)
Q Consensus       442 gl~~~~~~~L~  452 (526)
                      +|++......+
T Consensus       545 ~lG~k~F~q~A  555 (785)
T 3bzc_A          545 RLGEKTFEQAA  555 (785)
T ss_dssp             TCCHHHHHHHG
T ss_pred             CCCHHHHHHCC
T ss_conf             86602176525