HHsearch results for GI: 254780788 and protein with PDBid: 3cdi_A
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=91.38 E-value=0.03 Score=34.23 Aligned_cols=60 Identities=22% Similarity=0.255 Sum_probs=43.5
Q ss_pred HHHHHHHHCCCCCCCEEEE---------------CCC-CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEE
Q ss_conf 8999997628665424898---------------756-78799998534221102544278999998616745785
Q gi|254780788|r 283 SATFVINALRPAIVTKVVL---------------DED-VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 (526)
Q Consensus 283 ~~~fi~nAl~PA~v~~v~~---------------de~-~~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~ 342 (526)
+...+..||.-|+.-+..+ .+. -+...+-+|.+.....||.+|.|+|---.=||-+|||-
T Consensus 521 ~~~il~~al~qA~~gr~~il~~m~~~i~~pr~~~~~~aP~~~~~~i~~~ki~~~IG~gGk~I~~i~e~tg~~idi~ 596 (723)
T 3cdi_A 521 TKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIE 596 (723)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHCC------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECHHHHHHEECCCHHHHHHHHHHHCCEEEEE
T ss_conf 9999999999999999999999997506664333578872799997878855506887088999999889889983