HHsearch results for GI: 254780788 and protein with PDBid: 3h0g_G
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=96.30 E-value=0.002 Score=42.76 Aligned_cols=74 Identities=12% Similarity=0.195 Sum_probs=62.9
Q ss_pred HHHHCCCEEEEEEEECCCCEEEEEECCCEEEEEHHHCCC----------------CCCCCCCCEEEEEEEEECCCCCEEE
Q ss_conf 985208389999984057638999579358744787488----------------7511527669999976113587028
Q gi|254780788|r 134 FKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETIS----------------RENLRPGDRVKSYIYDVRREQRGPQ 197 (526)
Q Consensus 134 f~~r~Geiv~G~V~r~e~~~iiVdlg~~ea~Lp~~e~ip----------------~E~~~~Gdrika~i~~V~~~~rgpq 197 (526)
|+..+|+++.|+|..+....+++.+|...++.|.....+ +..|+.||.||+-|..|+.+.+.-+
T Consensus 80 f~P~~ge~~~g~V~~i~~~Gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~v~~~~~~i~ 159 (172)
T 3h0g_G 80 WRPFRGEVVDAIVTTVNKMGFFANIGPLNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGTRTDATEIF 159 (172)
T ss_dssp ECCCTTCEEECCCCEEETTEEECCBTTBCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEEEEEEESSSCEE
T ss_pred EECCCCCEEEEEEEEECCCEEEEEECCCEEEEEEECCCCCEEECHHHCEEEECCCCEEECCCCEEEEEEEEEECCCCCCE
T ss_conf 81578989999999982666999950879999601167751895357468863588099899999999999970537728
Q ss_pred EEEECCCHHH
Q ss_conf 9871598899
Q gi|254780788|r 198 VLLSRTHPQF 207 (526)
Q Consensus 198 i~lSRt~p~~ 207 (526)
++.|-..|.|
T Consensus 160 ~igsl~~~~l 169 (172)
T 3h0g_G 160 AIATMKEDYL 169 (172)
T ss_dssp EEEECCSTTC
T ss_pred EEEEECCCCC
T ss_conf 9999789877