BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780788|ref|YP_003065201.1| transcription elongation
factor NusA [Candidatus Liberibacter asiaticus str. psy62]
(526 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|90420533|ref|ZP_01228440.1| transcription termination/elongation factor nusA [Aurantimonas
manganoxydans SI85-9A1]
gi|90335261|gb|EAS49014.1| transcription termination/elongation factor nusA [Aurantimonas
manganoxydans SI85-9A1]
Length = 537
Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats.
Identities = 337/517 (65%), Positives = 420/517 (81%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSANRLELLQIADAVA EKSIDR++V+ MAD+IQKAARS YG ++IRV+IN +TG++
Sbjct: 3 VSANRLELLQIADAVAREKSIDREIVIGAMADAIQKAARSRYGQETNIRVDINQKTGEMK 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RLLEVV+EVE+ QI L +ARD++P + G +++ LPPMDFGR+A QSAKQVI+QK
Sbjct: 63 LQRLLEVVDEVEDPNTQIYLDLARDKNPDAEPGDFIAEQLPPMDFGRIAAQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VR+AERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I RE R GDR
Sbjct: 123 VRDAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEQIPRELFRYGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++++YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+ +KAV+RDPGSRAK+AV
Sbjct: 183 VRAFVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIITIKAVARDPGSRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
SSDSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL
Sbjct: 243 TSSDSSVDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPDAASFLVNALQPAEVAKVVL 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER++
Sbjct: 303 DEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQKEFAERSET 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM A+NVDE++ +L +EGFA VEE+A V E+A+IEGFD+ETA EIQ RARE+LE +
Sbjct: 363 FMNALNVDEMVGQVLASEGFATVEEIAYVDQDEVAAIEGFDDETASEIQERAREFLERRE 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
K ELGVS++L I G+ + + VALGE+G+KTMED AGC+ DDL+GW+E K G
Sbjct: 423 AEFDAKRVELGVSDDLRQINGVTTPMLVALGEDGVKTMEDFAGCAADDLIGWTERKDGET 482
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518
+F G LS+ + + M++ AR GWI + +A
Sbjct: 483 TRFPGALSAFDVSRADADQMVLQARLIAGWITEADLA 519
>gi|182678035|ref|YP_001832181.1| NusA antitermination factor [Beijerinckia indica subsp. indica ATCC
9039]
gi|182633918|gb|ACB94692.1| NusA antitermination factor [Beijerinckia indica subsp. indica ATCC
9039]
Length = 538
Score = 558 bits (1437), Expect = e-156, Method: Composition-based stats.
Identities = 334/524 (63%), Positives = 412/524 (78%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSANRLELLQIADAVA EKSIDR +VL+ M D+IQKAARS YG +++R EINP+TG+I
Sbjct: 3 VSANRLELLQIADAVAREKSIDRQIVLASMEDAIQKAARSRYGQETEVRAEINPKTGEIR 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
RLL VV+E++N QI+L AR ++P+ ++G +++ LPP DFGR+A QSAKQVI+QK
Sbjct: 63 FSRLLHVVDEIDNDAVQITLAEARKKNPAAELGDWIAETLPPFDFGRIAAQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQY E+KD++G+I++G VKRVEYGNVI+DLG + IRRDE I RE RPGDR
Sbjct: 123 VREAERDRQYQEYKDRIGDIVNGVVKRVEYGNVIIDLGRGEATIRRDEMIPREVFRPGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++Y+YDVRREQRGPQ+ LSRTHPQFM KLF EVPEIY+G+++VKAV+RDPGSRAK+AV
Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMAKLFRQEVPEIYDGVIEVKAVARDPGSRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATF++NAL+PA V KVVL
Sbjct: 243 ISRDTSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDAATFIVNALQPAEVVKVVL 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ERT
Sbjct: 303 DEDSARIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESARRQKEFTERTAM 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM A++VDE++ LL +EGF VEELA V+ SE+A IEGFDEETA EIQ RA YL I+
Sbjct: 363 FMGALDVDEVVGQLLASEGFRSVEELAFVEPSELAVIEGFDEETAAEIQARANAYLARIE 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ + RELGVS++L I G+ + + V GEN IKT+EDLAGC+ DDL+GWSE K G
Sbjct: 423 AEHETRRRELGVSDDLLEIDGLTNAMLVKFGENDIKTVEDLAGCATDDLVGWSERKDGET 482
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525
+ G L +++ E +I+ AR K GWI+ A E Q+
Sbjct: 483 TRHPGILDGFEVSREEAEGLIMKARVKAGWIDALPEASEPEQET 526
>gi|294851387|ref|ZP_06792060.1| N utilization substance protein A [Brucella sp. NVSL 07-0026]
gi|294819976|gb|EFG36975.1| N utilization substance protein A [Brucella sp. NVSL 07-0026]
Length = 591
Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats.
Identities = 339/522 (64%), Positives = 422/522 (80%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I
Sbjct: 57 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 116
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RLLEVVE VE+Y QISL +ARDR+P +G ++D LPPMDFGR+A QSAKQVI+QK
Sbjct: 117 LQRLLEVVENVEDYATQISLFMARDRNPDAQVGDFIADQLPPMDFGRIAAQSAKQVIVQK 176
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR
Sbjct: 177 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 236
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV
Sbjct: 237 IRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 296
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+ ++NAL+PA V KVVL
Sbjct: 297 VSRDASIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAASVIVNALQPAEVAKVVL 356
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+
Sbjct: 357 DEDAERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEFAERSNL 416
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM+A+NVDE++ +L +EGFA VEELA V EI+SI+GFD++TA EIQ RAREYLE I+
Sbjct: 417 FMEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDKDTAGEIQDRAREYLERIE 476
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ +ELGV++EL +PG+ + + VA+GE+G+KTMED AG +VDDL+GW E K G+
Sbjct: 477 AEQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERKDGDT 536
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523
G L+ + E M++ AR K GWI +E++A
Sbjct: 537 INHSGVLTPFDLSRVDAEQMVLAARLKAGWITEEELAAASED 578
>gi|225626528|ref|ZP_03784567.1| transcription termination factor NusA [Brucella ceti str. Cudo]
gi|225618185|gb|EEH15228.1| transcription termination factor NusA [Brucella ceti str. Cudo]
Length = 575
Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats.
Identities = 341/522 (65%), Positives = 423/522 (81%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I
Sbjct: 41 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 100
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RLLEVVE VE+Y QISL +ARDR+P +G ++D LPPMDFGR+A QSAKQVI+QK
Sbjct: 101 LQRLLEVVENVEDYATQISLFMARDRNPDAQVGDFIADQLPPMDFGRIAAQSAKQVIVQK 160
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR
Sbjct: 161 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 220
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV
Sbjct: 221 IRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 280
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL
Sbjct: 281 VSRDASIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVL 340
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+
Sbjct: 341 DEDAERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEFAERSNL 400
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM+A+NVDE++ +L +EGFA VEELA V EI+SI+GFDE+TA EIQ RAREYLE I+
Sbjct: 401 FMEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREYLERIE 460
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ +ELGV++EL +PG+ + + VA+GE+G+KTMED AG +VDDL+GW E K G+
Sbjct: 461 AEQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERKDGDT 520
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523
G L+ + E M++ AR K GWI +E++A
Sbjct: 521 INHSGVLTPFDLSRVDAEQMVLAARLKAGWITEEELAAASED 562
>gi|237816502|ref|ZP_04595495.1| transcription termination factor NusA [Brucella abortus str. 2308
A]
gi|237788569|gb|EEP62784.1| transcription termination factor NusA [Brucella abortus str. 2308
A]
Length = 575
Score = 554 bits (1429), Expect = e-156, Method: Composition-based stats.
Identities = 341/522 (65%), Positives = 423/522 (81%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I
Sbjct: 41 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 100
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RLLEVVE VE+Y QISL +ARDR+P +G ++D LPPMDFGR+A QSAKQVI+QK
Sbjct: 101 LQRLLEVVENVEDYATQISLFMARDRNPDAQVGDFIADQLPPMDFGRIAAQSAKQVIVQK 160
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR
Sbjct: 161 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 220
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV
Sbjct: 221 IRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 280
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL
Sbjct: 281 VSRDASIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVL 340
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+
Sbjct: 341 DEDAERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEFAERSNL 400
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM+A+NVDE++ +L +EGFA VEELA V EI+SI+GFDE+TA EIQ RAREYLE I+
Sbjct: 401 FMEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREYLERIE 460
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ +ELGV++EL +PG+ + + VA+GE+G+KTMED AG +VDDL+GW E K G+
Sbjct: 461 AEQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERKDGDT 520
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523
G L+ + E M++ AR K GWI +E++A
Sbjct: 521 INHSGVLTPFDLSRVDAEQMVLAARLKAGWITEEELAAASED 562
>gi|319898339|ref|YP_004158432.1| transcription elongation protein [Bartonella clarridgeiae 73]
gi|319402303|emb|CBI75842.1| transcription elongation protein [Bartonella clarridgeiae 73]
Length = 536
Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats.
Identities = 328/524 (62%), Positives = 423/524 (80%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
+SANRLELLQIADAVA EKSIDR++V+S MAD+IQKAARS YG ++IR EIN +TG+I
Sbjct: 3 ISANRLELLQIADAVAREKSIDREIVISAMADAIQKAARSRYGQETNIRAEINSKTGEIK 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RLL+VV+ VE+YT +I+L A R +G +SD LPPMDFGR+A QSAKQVI+QK
Sbjct: 63 LQRLLKVVDIVEDYTTEIALSDALKRKKDAKVGDFLSDLLPPMDFGRIATQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VR+AER+ Q+ EFK+K+GEIISGTVKRVEYGNVIVD+G + ++RRDE I RE+ R GDR
Sbjct: 123 VRDAERNHQFEEFKNKIGEIISGTVKRVEYGNVIVDVGRGEAIVRRDELIPRESFRYGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++++++DV RE RGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV
Sbjct: 183 IRAFVHDVHREPRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATF++NAL+PA V+KVVL
Sbjct: 243 VSRDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAATFIVNALQPAEVSKVVL 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S NRQK+F ER++
Sbjct: 303 DEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWNIDILTEQEESENRQKEFTERSKL 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM+ ++VDE++ ++ +EGF +EE+A V + EI SI+GFD +TA+EIQ RAREYLE +
Sbjct: 363 FMETLDVDEMVGQVMASEGFTSIEEIAYVDLEEITSIDGFDHDTALEIQNRAREYLECKE 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
L +K ++LGVS+EL ++PG+ + + VALGE+GIKTMED AG +VDDL+GW E K G
Sbjct: 423 KELNEKRKKLGVSDELQTLPGMTNAMLVALGEDGIKTMEDFAGYAVDDLVGWRECKEGQT 482
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525
+ F G L++ + E+M++ AR + GWI + + V+DA
Sbjct: 483 QTFPGILTAFDITRADAETMVLAARVQAGWINQTDLPQHPVEDA 526
>gi|86355778|ref|YP_467670.1| transcription elongation factor NusA [Rhizobium etli CFN 42]
gi|86279880|gb|ABC88943.1| N-utilization substance protein A [Rhizobium etli CFN 42]
Length = 533
Score = 553 bits (1426), Expect = e-155, Method: Composition-based stats.
Identities = 354/519 (68%), Positives = 431/519 (83%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YGT S+IR +INP+TG+I
Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGTESNIRADINPKTGEIR 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RLLEVV++ E+Y+ QI L++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK
Sbjct: 63 LQRLLEVVDKAEDYSTQIPLELARDRNPDAALGDFIADPLPPMDFGRIAAQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQ+ EFKD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDR
Sbjct: 123 VREAERDRQFDEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENVRYGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+QVK+V+RDPGSRAK+AV
Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQVKSVARDPGSRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATFV+NAL+PA V KVVL
Sbjct: 243 ISNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSQDPATFVVNALQPAEVAKVVL 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+FNERT
Sbjct: 303 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDIMTEAEESERRQKEFNERTNL 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM +++VDE++ +L +EGFA VEELA V + EIASI+GFDE+TA EIQ RAREYLE ++
Sbjct: 363 FMDSLDVDEMVGQVLASEGFAAVEELAYVDLDEIASIDGFDEDTAQEIQTRAREYLEKLE 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ +K + LGV +EL I G+ +++ VALGE+GIKT+ED AGC+ DDL+GW+E K G
Sbjct: 423 AEMDEKRKALGVKDELRQIDGMTAQMMVALGEDGIKTIEDFAGCAADDLVGWTERKNGET 482
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADE 520
+KF+G S + + E MI+ AR GWI +E +A
Sbjct: 483 KKFEGLFSKFDLSRVEAEQMIVQARLAAGWITEEDLAKG 521
>gi|190889787|ref|YP_001976329.1| N-utilization substance protein (transcription elongation factor)
[Rhizobium etli CIAT 652]
gi|190695066|gb|ACE89151.1| N-utilization substance protein (transcription elongation factor)
[Rhizobium etli CIAT 652]
gi|327192408|gb|EGE59368.1| N-utilization substance protein (transcription elongation factor)
[Rhizobium etli CNPAF512]
Length = 533
Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats.
Identities = 352/519 (67%), Positives = 431/519 (83%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YGT S+IR +INP+TG+I
Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGTESNIRADINPKTGEIR 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RLLEVV++ E+Y+ QI L++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK
Sbjct: 63 LQRLLEVVDKAEDYSTQIPLELARDRNPDAALGDFIADPLPPMDFGRIAAQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQ+ EFKD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDR
Sbjct: 123 VREAERDRQFDEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENVRYGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+QVK+V+RDPGSRAK+AV
Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQVKSVARDPGSRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATFV+NAL+PA V KVVL
Sbjct: 243 ISNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSQDPATFVVNALQPAEVAKVVL 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+FNERT
Sbjct: 303 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDIMTEAEESERRQKEFNERTNL 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM +++VDE++ +L +EGFA VEELA V + EI+SI+GFDE+TA EIQ RARE+LE ++
Sbjct: 363 FMDSLDVDEMVGQVLASEGFAAVEELAYVDLDEISSIDGFDEDTAQEIQTRAREFLERLE 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ +K + LGV +EL I G+ +++ VALGE+GIKT+ED AGC+ DDL+GW+E K G
Sbjct: 423 AEMDEKRKALGVEDELRGIDGMTAQMMVALGEDGIKTIEDFAGCAADDLVGWTERKNGET 482
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADE 520
+KF+G S + + E MI+ AR GWI +E +A
Sbjct: 483 KKFEGLFSKFDVSRVEAEQMIVQARLAAGWITEEDLAKG 521
>gi|114705359|ref|ZP_01438267.1| transcription elongation factor NusA [Fulvimarina pelagi HTCC2506]
gi|114540144|gb|EAU43264.1| transcription elongation factor NusA [Fulvimarina pelagi HTCC2506]
Length = 533
Score = 551 bits (1419), Expect = e-154, Method: Composition-based stats.
Identities = 338/517 (65%), Positives = 422/517 (81%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSANRLELLQIADAVA EK+IDR++V+ MAD+IQKAARS YG ++IR +IN +TG++
Sbjct: 3 VSANRLELLQIADAVAREKTIDREIVIEAMADAIQKAARSRYGQETNIRCDINTKTGEMK 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RLLEVVE+VE+ QI L++ARD++P + G +++ LPPMDFGR+A QSAKQVI+QK
Sbjct: 63 LQRLLEVVEDVEDPATQIYLELARDKNPDAEPGDFIAEQLPPMDFGRIAAQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERD QY E+KD+VGEII+G VKRVEYGNVIVDLG + +IRRDE I RE RPGDR
Sbjct: 123 VREAERDMQYDEYKDRVGEIINGQVKRVEYGNVIVDLGKGEAIIRRDEQIPRELYRPGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++Y+YDVRRE RGPQ+ LSRTHPQFM KLF MEVPEIY+GI+ +K+V+RDPGSRAK+AV
Sbjct: 183 VRAYVYDVRREPRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIITLKSVARDPGSRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
SSDSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL
Sbjct: 243 VSSDSSVDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVL 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TEEE+S RQK+FNER++
Sbjct: 303 DEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEEEESERRQKEFNERSEI 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM+A+NVDE++ LL +EGFA VEE+A V E++SIEGFDE+TA E+Q RARE+LE +
Sbjct: 363 FMEALNVDEMVGQLLASEGFATVEEVAYVDAEEVSSIEGFDEDTAEELQSRAREFLERRE 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
K ELGV++EL IPG+ +++ VALGE+G KT+ED AG +VDDL GW+E G
Sbjct: 423 AEFDAKRVELGVADELKQIPGLTTEMLVALGEDGTKTIEDFAGYAVDDLCGWTERSKGET 482
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518
++F+G LS + E M+++AR K GWI +E +A
Sbjct: 483 KRFEGTLSKFDVSRADAEQMVLNARLKAGWITEEDLA 519
>gi|116249893|ref|YP_765731.1| transcription elongation factor NusA [Rhizobium leguminosarum bv.
viciae 3841]
gi|115254541|emb|CAK05615.1| putative transcription elongation protein (N utilization substance
protein A) (L factor) [Rhizobium leguminosarum bv.
viciae 3841]
Length = 533
Score = 549 bits (1416), Expect = e-154, Method: Composition-based stats.
Identities = 354/519 (68%), Positives = 431/519 (83%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YGT S+IR +INP+TG+I
Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGTESNIRADINPKTGEIR 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RLLEVVE+ E+Y+ QI L++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK
Sbjct: 63 LQRLLEVVEKAEDYSTQIPLELARDRNPDAALGDFIADPLPPMDFGRIAAQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQ+ EFKD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDR
Sbjct: 123 VREAERDRQFDEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENVRYGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+QVK+V+RDPGSRAK+AV
Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQVKSVARDPGSRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATFV+NAL+PA V KVVL
Sbjct: 243 ISNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSQDPATFVVNALQPAEVAKVVL 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+FNERT
Sbjct: 303 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDIMTEAEESERRQKEFNERTNL 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM +++VDE++ +L +EGFA VEELA V + EI+SI+GFDEETA EIQ RARE+LE ++
Sbjct: 363 FMDSLDVDEMVGQVLASEGFAAVEELAYVDLDEISSIDGFDEETAQEIQQRAREFLERLE 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ +K + LGV +EL I G+ +++ VALGE+GIK++ED AGC+ DDL+GWSE K G
Sbjct: 423 AEMDEKRKALGVQDELREINGMTAQMMVALGEDGIKSIEDFAGCAADDLVGWSERKNGET 482
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADE 520
+KF+G S + + E MI+ AR GWI +E +A
Sbjct: 483 KKFEGLFSKFDVSRVEAEQMIVQARLSAGWITQEDLAKG 521
>gi|209551640|ref|YP_002283557.1| transcription elongation factor NusA [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209537396|gb|ACI57331.1| NusA antitermination factor [Rhizobium leguminosarum bv. trifolii
WSM2304]
Length = 535
Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats.
Identities = 355/519 (68%), Positives = 431/519 (83%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YGT S+IR +INP+TG+I
Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGTESNIRADINPKTGEIR 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RLLEVV++ E+Y+ QI L++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK
Sbjct: 63 LQRLLEVVDKAEDYSTQIPLELARDRNPDAALGDFIADPLPPMDFGRIAAQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQ+ EFKD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDR
Sbjct: 123 VREAERDRQFDEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENVRYGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+QVK+V+RDPGSRAK+AV
Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQVKSVARDPGSRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATFV+NAL+PA V KVVL
Sbjct: 243 ISNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSQDPATFVVNALQPAEVAKVVL 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+FNERT
Sbjct: 303 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDIMTEAEESERRQKEFNERTNL 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM +++VDE++ +L +EGFA VEELA V + EI+SI+GFDEETA EIQ RARE+LE ++
Sbjct: 363 FMDSLDVDEMVGQVLASEGFAAVEELAYVDLDEISSIDGFDEETAQEIQQRAREFLERLE 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ +K + LGV +EL I GI +++ VALGE+GIKT+ED AGC+ DDL+GWSE K G
Sbjct: 423 AEMDEKRKALGVQDELREINGITAQMMVALGEDGIKTIEDFAGCAADDLVGWSERKNGET 482
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADE 520
+KF+G S + + E MI+ AR GWI +E +A
Sbjct: 483 KKFEGLFSKFDVSRVEAEQMIVQARLSAGWITEEDLAKG 521
>gi|217978443|ref|YP_002362590.1| NusA antitermination factor [Methylocella silvestris BL2]
gi|217503819|gb|ACK51228.1| NusA antitermination factor [Methylocella silvestris BL2]
Length = 532
Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats.
Identities = 331/530 (62%), Positives = 416/530 (78%), Gaps = 7/530 (1%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSANRLELLQIADAVA EKSIDR +VLS M D+IQKAARS YG +++R EINP+TG+I
Sbjct: 3 VSANRLELLQIADAVAREKSIDRQIVLSSMEDAIQKAARSRYGQETEVRAEINPKTGEIR 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
RLL VV+++EN I+L+ AR ++P+ +G +++ LPP DFGR+A QSAKQVI+QK
Sbjct: 63 FSRLLLVVDQIENDAIHITLEDARKKNPAAQVGDWIAETLPPFDFGRIAAQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQY E+KD++G+I++G VKRVEYGNVI+DLG + IRRDE I RE RPGDR
Sbjct: 123 VREAERDRQYQEYKDRIGDIVNGVVKRVEYGNVIIDLGRGEATIRRDEMIPREMFRPGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++Y+YDVRREQRGPQ+ LSRTHPQFM KLF EVPEIY+ I+QVKAV+RDPGSRAK+AV
Sbjct: 183 ARAYVYDVRREQRGPQIFLSRTHPQFMAKLFQQEVPEIYDNIIQVKAVARDPGSRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATF++NAL+PA V KVVL
Sbjct: 243 ISRDASIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDAATFIVNALQPAEVVKVVL 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ERT
Sbjct: 303 DEDSARIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFVERTNA 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM A++VDE++ LL +EGF VEELA V+ +E+A+IEGFDE+TAVEIQ RA++YL I+
Sbjct: 363 FMNALDVDEVVGQLLASEGFRSVEELAFVEPAELAAIEGFDEDTAVEIQARAQDYLARIE 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
++ ELGV++EL + G+ + + V GEN +KT+EDLAGC+ DDL+GW+E K G
Sbjct: 423 AEQDQRRIELGVADELREVAGVTTAMLVKFGENDVKTVEDLAGCATDDLIGWTERKEGES 482
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIE-------KEKVADEEVQD 524
K G+L +++ E+MI+ AR GWI+ +E + EV+D
Sbjct: 483 VKHAGYLDGFELTREEAETMIMTARVHAGWIDAIPQPAVEEPQLEGEVRD 532
>gi|241207071|ref|YP_002978167.1| transcription elongation factor NusA [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240860961|gb|ACS58628.1| NusA antitermination factor [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 533
Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats.
Identities = 353/519 (68%), Positives = 430/519 (82%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YGT S+IR +INP+TG+I
Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGTESNIRADINPKTGEIR 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RLLEVVE+ E+Y+ QI L++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK
Sbjct: 63 LQRLLEVVEKAEDYSTQIPLELARDRNPDAALGDFIADPLPPMDFGRIAAQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQ+ EFKD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDR
Sbjct: 123 VREAERDRQFDEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENVRYGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+QVK+V+RDPGSRAK+AV
Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQVKSVARDPGSRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATFV+NAL+PA V KVVL
Sbjct: 243 ISNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSQDPATFVVNALQPAEVAKVVL 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+FNERT
Sbjct: 303 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDIMTEAEESERRQKEFNERTNL 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM +++VDE++ +L +EGFA VEELA V + EI+SI+GFDEETA EIQ RARE+LE ++
Sbjct: 363 FMDSLDVDEMVGQVLASEGFAAVEELAYVDLDEISSIDGFDEETAQEIQQRAREFLERLE 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ +K + LGV +EL I G+ +++ VALGE+GIK++ED AGC+ DDL+GWSE K G
Sbjct: 423 AEMDEKRKALGVQDELREINGMTAQMMVALGEDGIKSIEDFAGCAADDLVGWSERKNGET 482
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADE 520
+KF+G S + + E MI+ AR GWI +E +
Sbjct: 483 KKFEGLFSKFDVSRVEAEQMIVQARLSAGWITQEDLDKG 521
>gi|225853588|ref|YP_002733821.1| transcription elongation factor NusA [Brucella melitensis ATCC
23457]
gi|256262928|ref|ZP_05465460.1| ribosomal protein S1 [Brucella melitensis bv. 2 str. 63/9]
gi|225641953|gb|ACO01867.1| transcription termination factor NusA [Brucella melitensis ATCC
23457]
gi|263092802|gb|EEZ16977.1| ribosomal protein S1 [Brucella melitensis bv. 2 str. 63/9]
gi|326410161|gb|ADZ67226.1| transcription elongation factor NusA [Brucella melitensis M28]
gi|326539879|gb|ADZ88094.1| transcription termination factor NusA [Brucella melitensis M5-90]
Length = 537
Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats.
Identities = 339/522 (64%), Positives = 421/522 (80%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I
Sbjct: 3 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RLLEVVE VE+Y QISL +ARDR+P +G ++D LPPMDFGR+A QSAKQVI+QK
Sbjct: 63 LQRLLEVVENVEDYATQISLFMARDRNPDAQVGDFIADQLPPMDFGRIAAQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR
Sbjct: 123 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV
Sbjct: 183 IRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL
Sbjct: 243 VSRDASIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVL 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP +QLSLAIGRRGQNVRLA QLTGW IDI+TE+E+S R K+F ER+
Sbjct: 303 DEDAERIEVVVPNDQLSLAIGRRGQNVRLALQLTGWDIDILTEDEESERRHKEFAERSNL 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM+A+NVDE++ +L +EGFA VEELA V EI+SI+GFDE+TA EIQ RAREYLE I+
Sbjct: 363 FMEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREYLERIE 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ +ELGV++EL +PG+ + + VA+GE+G+KTMED AG +VDDL+GW E K G+
Sbjct: 423 AEQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERKDGDT 482
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523
G L+ + E M++ AR K GWI +E++A
Sbjct: 483 INHSGVLTPFDLSRVDAEQMVLAARLKAGWITEEELAAASED 524
>gi|17988250|ref|NP_540884.1| transcription elongation factor NusA [Brucella melitensis bv. 1
str. 16M]
gi|23503011|ref|NP_699138.1| transcription elongation factor NusA [Brucella suis 1330]
gi|62291000|ref|YP_222793.1| transcription elongation factor NusA [Brucella abortus bv. 1 str.
9-941]
gi|82700909|ref|YP_415483.1| transcription elongation factor NusA [Brucella melitensis biovar
Abortus 2308]
gi|148559551|ref|YP_001259957.1| transcription elongation factor NusA [Brucella ovis ATCC 25840]
gi|161620071|ref|YP_001593958.1| transcription elongation factor NusA [Brucella canis ATCC 23365]
gi|189025212|ref|YP_001935980.1| transcription elongation factor NusA [Brucella abortus S19]
gi|254690294|ref|ZP_05153548.1| transcription elongation factor NusA [Brucella abortus bv. 6 str.
870]
gi|254694782|ref|ZP_05156610.1| transcription elongation factor NusA [Brucella abortus bv. 3 str.
Tulya]
gi|254696410|ref|ZP_05158238.1| transcription elongation factor NusA [Brucella abortus bv. 2 str.
86/8/59]
gi|254705161|ref|ZP_05166989.1| transcription elongation factor NusA [Brucella suis bv. 3 str. 686]
gi|254707321|ref|ZP_05169149.1| transcription elongation factor NusA [Brucella pinnipedialis
M163/99/10]
gi|254709137|ref|ZP_05170948.1| transcription elongation factor NusA [Brucella pinnipedialis B2/94]
gi|254731323|ref|ZP_05189901.1| transcription elongation factor NusA [Brucella abortus bv. 4 str.
292]
gi|256030662|ref|ZP_05444276.1| transcription elongation factor NusA [Brucella pinnipedialis
M292/94/1]
gi|256045766|ref|ZP_05448644.1| transcription elongation factor NusA [Brucella melitensis bv. 1
str. Rev.1]
gi|256060123|ref|ZP_05450305.1| transcription elongation factor NusA [Brucella neotomae 5K33]
gi|256112485|ref|ZP_05453406.1| transcription elongation factor NusA [Brucella melitensis bv. 3
str. Ether]
gi|256158664|ref|ZP_05456547.1| transcription elongation factor NusA [Brucella ceti M490/95/1]
gi|256254068|ref|ZP_05459604.1| transcription elongation factor NusA [Brucella ceti B1/94]
gi|256258547|ref|ZP_05464083.1| transcription elongation factor NusA [Brucella abortus bv. 9 str.
C68]
gi|256370558|ref|YP_003108069.1| transcription elongation factor NusA [Brucella microti CCM 4915]
gi|260169566|ref|ZP_05756377.1| transcription elongation factor NusA [Brucella sp. F5/99]
gi|260546263|ref|ZP_05822003.1| ribosomal protein S1 [Brucella abortus NCTC 8038]
gi|260563062|ref|ZP_05833548.1| ribosomal protein S1 [Brucella melitensis bv. 1 str. 16M]
gi|260755834|ref|ZP_05868182.1| transcription elongation factor NusA [Brucella abortus bv. 6 str.
870]
gi|260759057|ref|ZP_05871405.1| transcription elongation factor NusA [Brucella abortus bv. 4 str.
292]
gi|260760782|ref|ZP_05873125.1| transcription elongation factor NusA [Brucella abortus bv. 2 str.
86/8/59]
gi|260884859|ref|ZP_05896473.1| transcription elongation factor NusA [Brucella abortus bv. 9 str.
C68]
gi|261215109|ref|ZP_05929390.1| transcription elongation factor NusA [Brucella abortus bv. 3 str.
Tulya]
gi|261221209|ref|ZP_05935490.1| transcription elongation factor NusA [Brucella ceti B1/94]
gi|261314803|ref|ZP_05954000.1| transcription elongation factor NusA [Brucella pinnipedialis
M163/99/10]
gi|261316637|ref|ZP_05955834.1| transcription elongation factor NusA [Brucella pinnipedialis B2/94]
gi|261324100|ref|ZP_05963297.1| transcription elongation factor NusA [Brucella neotomae 5K33]
gi|261755866|ref|ZP_05999575.1| transcription elongation factor NusA [Brucella suis bv. 3 str. 686]
gi|261759094|ref|ZP_06002803.1| ribosomal protein S1 [Brucella sp. F5/99]
gi|265987709|ref|ZP_06100266.1| transcription elongation factor NusA [Brucella pinnipedialis
M292/94/1]
gi|265992183|ref|ZP_06104740.1| transcription elongation factor NusA [Brucella melitensis bv. 1
str. Rev.1]
gi|265993921|ref|ZP_06106478.1| transcription elongation factor NusA [Brucella melitensis bv. 3
str. Ether]
gi|265997170|ref|ZP_06109727.1| transcription elongation factor NusA [Brucella ceti M490/95/1]
gi|297247386|ref|ZP_06931104.1| transcription termination protein NusA [Brucella abortus bv. 5 str.
B3196]
gi|17984018|gb|AAL53148.1| n utilization substance protein a [Brucella melitensis bv. 1 str.
16M]
gi|23349051|gb|AAN31053.1| N utilization substance protein A [Brucella suis 1330]
gi|62197132|gb|AAX75432.1| MusA, N utilization substance protein A [Brucella abortus bv. 1
str. 9-941]
gi|82617010|emb|CAJ12119.1| Ribosomal protein S1:RNA binding S1:KH domain:KH domain, type 1
[Brucella melitensis biovar Abortus 2308]
gi|148370808|gb|ABQ60787.1| N utilization substance protein A [Brucella ovis ATCC 25840]
gi|161336882|gb|ABX63187.1| transcription termination factor NusA [Brucella canis ATCC 23365]
gi|189020784|gb|ACD73506.1| Ribosomal protein S1 [Brucella abortus S19]
gi|256000721|gb|ACU49120.1| transcription elongation factor NusA [Brucella microti CCM 4915]
gi|260096370|gb|EEW80246.1| ribosomal protein S1 [Brucella abortus NCTC 8038]
gi|260153078|gb|EEW88170.1| ribosomal protein S1 [Brucella melitensis bv. 1 str. 16M]
gi|260669375|gb|EEX56315.1| transcription elongation factor NusA [Brucella abortus bv. 4 str.
292]
gi|260671214|gb|EEX58035.1| transcription elongation factor NusA [Brucella abortus bv. 2 str.
86/8/59]
gi|260675942|gb|EEX62763.1| transcription elongation factor NusA [Brucella abortus bv. 6 str.
870]
gi|260874387|gb|EEX81456.1| transcription elongation factor NusA [Brucella abortus bv. 9 str.
C68]
gi|260916716|gb|EEX83577.1| transcription elongation factor NusA [Brucella abortus bv. 3 str.
Tulya]
gi|260919793|gb|EEX86446.1| transcription elongation factor NusA [Brucella ceti B1/94]
gi|261295860|gb|EEX99356.1| transcription elongation factor NusA [Brucella pinnipedialis B2/94]
gi|261300080|gb|EEY03577.1| transcription elongation factor NusA [Brucella neotomae 5K33]
gi|261303829|gb|EEY07326.1| transcription elongation factor NusA [Brucella pinnipedialis
M163/99/10]
gi|261739078|gb|EEY27074.1| ribosomal protein S1 [Brucella sp. F5/99]
gi|261745619|gb|EEY33545.1| transcription elongation factor NusA [Brucella suis bv. 3 str. 686]
gi|262551638|gb|EEZ07628.1| transcription elongation factor NusA [Brucella ceti M490/95/1]
gi|262764902|gb|EEZ10823.1| transcription elongation factor NusA [Brucella melitensis bv. 3
str. Ether]
gi|263003249|gb|EEZ15542.1| transcription elongation factor NusA [Brucella melitensis bv. 1
str. Rev.1]
gi|264659906|gb|EEZ30167.1| transcription elongation factor NusA [Brucella pinnipedialis
M292/94/1]
gi|297174555|gb|EFH33902.1| transcription termination protein NusA [Brucella abortus bv. 5 str.
B3196]
Length = 537
Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats.
Identities = 341/522 (65%), Positives = 423/522 (81%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I
Sbjct: 3 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RLLEVVE VE+Y QISL +ARDR+P +G ++D LPPMDFGR+A QSAKQVI+QK
Sbjct: 63 LQRLLEVVENVEDYATQISLFMARDRNPDAQVGDFIADQLPPMDFGRIAAQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR
Sbjct: 123 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV
Sbjct: 183 IRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL
Sbjct: 243 VSRDASIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVL 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+
Sbjct: 303 DEDAERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEFAERSNL 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM+A+NVDE++ +L +EGFA VEELA V EI+SI+GFDE+TA EIQ RAREYLE I+
Sbjct: 363 FMEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREYLERIE 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ +ELGV++EL +PG+ + + VA+GE+G+KTMED AG +VDDL+GW E K G+
Sbjct: 423 AEQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERKDGDT 482
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523
G L+ + E M++ AR K GWI +E++A
Sbjct: 483 INHSGVLTPFDLSRVDAEQMVLAARLKAGWITEEELAAASED 524
>gi|15963990|ref|NP_384343.1| transcription elongation factor NusA [Sinorhizobium meliloti 1021]
gi|307306402|ref|ZP_07586146.1| NusA antitermination factor [Sinorhizobium meliloti BL225C]
gi|307319289|ref|ZP_07598718.1| NusA antitermination factor [Sinorhizobium meliloti AK83]
gi|15073166|emb|CAC41674.1| Probable N utilization substance protein A [Sinorhizobium meliloti
1021]
gi|306895125|gb|EFN25882.1| NusA antitermination factor [Sinorhizobium meliloti AK83]
gi|306902244|gb|EFN32841.1| NusA antitermination factor [Sinorhizobium meliloti BL225C]
Length = 542
Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats.
Identities = 354/516 (68%), Positives = 437/516 (84%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YG+ S+IR +INP+TG+I
Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGSESNIRADINPKTGEIR 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RLLEVVE+ E+Y+ QI +++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK
Sbjct: 63 LQRLLEVVEKAEDYSTQIPIELARDRNPDAKLGDFIADPLPPMDFGRIAAQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQY EFKD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDR
Sbjct: 123 VREAERDRQYDEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENMRYGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++++YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+Q+K+V+RDPGSRAK+AV
Sbjct: 183 VRAFVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQIKSVARDPGSRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD A+F++NAL+PA V KVVL
Sbjct: 243 VSNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPDPASFIVNALQPAEVAKVVL 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+FNERTQ
Sbjct: 303 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQKEFNERTQL 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM A++VDE++ +L +EGFA VEELA V++ EI+SIEGFDE+TA E+Q RAREYLE I+
Sbjct: 363 FMDALDVDEMVGQVLASEGFAQVEELAYVELDEISSIEGFDEDTANELQTRAREYLEKIE 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ K +ELGVS+EL +I G+ S++ VALGE GIKT+ED AGC+ DDL+GW+E K G
Sbjct: 423 AEMDAKRKELGVSDELRTIDGLTSQMLVALGEEGIKTIEDFAGCAADDLVGWTERKDGET 482
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517
++F+G S +++ E+MI+ AR GWI +E +
Sbjct: 483 KRFEGIFSKFEVTREEAETMIVQARLAAGWITEEDL 518
>gi|254713438|ref|ZP_05175249.1| transcription elongation factor NusA [Brucella ceti M644/93/1]
gi|254716206|ref|ZP_05178017.1| transcription elongation factor NusA [Brucella ceti M13/05/1]
gi|261217980|ref|ZP_05932261.1| transcription elongation factor NusA [Brucella ceti M13/05/1]
gi|261321170|ref|ZP_05960367.1| transcription elongation factor NusA [Brucella ceti M644/93/1]
gi|260923069|gb|EEX89637.1| transcription elongation factor NusA [Brucella ceti M13/05/1]
gi|261293860|gb|EEX97356.1| transcription elongation factor NusA [Brucella ceti M644/93/1]
Length = 537
Score = 547 bits (1410), Expect = e-153, Method: Composition-based stats.
Identities = 340/522 (65%), Positives = 422/522 (80%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I
Sbjct: 3 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RLLEVVE VE+Y QISL +ARDR+P +G ++D LPPMDFGR+A QSAKQVI+QK
Sbjct: 63 LQRLLEVVENVEDYATQISLFMARDRNPDAQVGDFIADQLPPMDFGRIAAQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR
Sbjct: 123 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV
Sbjct: 183 IRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL
Sbjct: 243 VSRDASIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVL 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+
Sbjct: 303 DEDAERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEFAERSNL 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM+A+NVDE++ +L +EGFA VEELA V EI+SI+GFDE+TA EIQ RAREYLE I+
Sbjct: 363 FMEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREYLERIE 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ +ELGV++EL +PG+ + + VA+GE+G+KT ED AG +VDDL+GW E K G+
Sbjct: 423 AEQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTKEDFAGYAVDDLVGWRERKDGDT 482
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523
G L+ + E M++ AR K GWI +E++A
Sbjct: 483 INHSGVLTPFDLSRVDAEQMVLAARLKAGWITEEELAAASED 524
>gi|328545919|ref|YP_004306028.1| transcription elongation protein (N utilization substance protein
A) (L factor) [polymorphum gilvum SL003B-26A1]
gi|326415659|gb|ADZ72722.1| Putative transcription elongation protein (N utilization substance
protein A) (L factor) [Polymorphum gilvum SL003B-26A1]
Length = 544
Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats.
Identities = 337/522 (64%), Positives = 422/522 (80%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
+SANRLELLQIADAVA EKSIDR +V++ M D+IQKAARS YGT +++R EIN +TG+I
Sbjct: 3 ISANRLELLQIADAVAREKSIDRGIVIAAMEDAIQKAARSRYGTETEVRAEINSKTGEIR 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RLL+VVE VEN + +ISL A+ R+P +G +++PLPP+DFGR+A QSAKQVI+QK
Sbjct: 63 LQRLLQVVETVENVSTEISLADAKARNPEATLGDFIAEPLPPLDFGRIAAQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQY EFKD++GEI++G VKR EYGNVIVDLG +G++RRDE I RE R GDR
Sbjct: 123 VREAERDRQYDEFKDRIGEIVNGVVKRAEYGNVIVDLGRGEGIVRRDELIPREIFRTGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+++YIYDVRREQRGPQ+ LSRTHPQFM KLF EVPEIY+G++++KAV+RDPGSRAK+AV
Sbjct: 183 IRAYIYDVRREQRGPQIFLSRTHPQFMAKLFAQEVPEIYDGVIEIKAVARDPGSRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+PD+ATF++NAL+PA V KVVL
Sbjct: 243 ISKDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWNPDAATFIVNALQPAEVAKVVL 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+
Sbjct: 303 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWAIDIMTEQEESERRQKEFQERSTL 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM+A+NVDE++ LL EGF VEE+A V + EIA IEGFDE+TA EIQ RAR+YL ++
Sbjct: 363 FMEALNVDEMVGQLLATEGFTSVEEVAYVDLEEIAMIEGFDEDTAEEIQARARDYLAELE 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
L + RELGV +EL SI G+ + + VALG++G+KT+EDLAGC+ DDL+GW+E K G
Sbjct: 423 AKLDDERRELGVQDELRSIDGLTTAMLVALGKDGVKTIEDLAGCATDDLVGWTERKEGET 482
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523
+ DG LS + E+MI+ AR GWI +E++A++ +
Sbjct: 483 IRHDGALSGFDVSRADAEAMILAARLAAGWITEEELANQNDE 524
>gi|227824069|ref|YP_002828042.1| transcription elongation factor NusA [Sinorhizobium fredii NGR234]
gi|227343071|gb|ACP27289.1| transcription termination factor, NusA [Sinorhizobium fredii
NGR234]
Length = 536
Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats.
Identities = 355/522 (68%), Positives = 440/522 (84%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YG+ S+IR +IN +TG+I
Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGSESNIRADINSKTGEIR 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RLLEVVE+ ++Y+ QI L++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK
Sbjct: 63 LQRLLEVVEKADDYSTQIPLELARDRNPDAKLGDFIADPLPPMDFGRIAAQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQY EFKD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDR
Sbjct: 123 VREAERDRQYEEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENMRYGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++++YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+Q+K+V+RDPGSRAK+AV
Sbjct: 183 VRAFVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQIKSVARDPGSRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD A+F++NAL+PA VTKVVL
Sbjct: 243 VSNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPDPASFIVNALQPAEVTKVVL 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+FNERTQ
Sbjct: 303 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQKEFNERTQL 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM A++VDE++ +L +EGFA VEELA V + EI+SI+GFDEETA EIQ RAREYL+ ++
Sbjct: 363 FMDALDVDEMVGQVLASEGFAQVEELAYVDLDEISSIDGFDEETATEIQTRAREYLDKVE 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ K +ELGVS+EL I G+ S++ VALGE GIKT+ED AGC+ DDL+GW+E K G
Sbjct: 423 AEMDAKRKELGVSDELRQIDGLTSQMLVALGEEGIKTIEDFAGCAADDLVGWTERKDGET 482
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523
++F+G S L +++ E+MI+ AR GWI +E +A ++ +
Sbjct: 483 KRFEGTFSKLEVSREEAEAMIVQARLAAGWITEEDLAADQDE 524
>gi|163844176|ref|YP_001628581.1| transcription elongation factor NusA [Brucella suis ATCC 23445]
gi|163674899|gb|ABY39010.1| transcription termination factor NusA [Brucella suis ATCC 23445]
Length = 537
Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats.
Identities = 341/522 (65%), Positives = 423/522 (81%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I
Sbjct: 3 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RLLEVVE VE+Y QISL +ARDR+P +G ++D LPPMDFGR+A QSAKQVI+QK
Sbjct: 63 LQRLLEVVENVEDYATQISLFMARDRNPDAQVGDFIADQLPPMDFGRIAAQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR
Sbjct: 123 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV
Sbjct: 183 IRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSP +A+F++NAL+PA VTKVVL
Sbjct: 243 VSRDASIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPVAASFIVNALQPAEVTKVVL 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+
Sbjct: 303 DEDAERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEFAERSNL 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM+A+NVDE++ +L +EGFA VEELA V EI+SI+GFDE+TA EIQ RAREYLE I+
Sbjct: 363 FMEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREYLERIE 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ +ELGV++EL +PG+ + + VA+GE+G+KTMED AG +VDDL+GW E K G+
Sbjct: 423 AEQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERKDGDT 482
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523
G L+ + E M++ AR K GWI +E++A
Sbjct: 483 INHSGVLTPFDLSRVDAEQMVLAARLKAGWITEEELAAASED 524
>gi|260567370|ref|ZP_05837840.1| ribosomal protein S1 [Brucella suis bv. 4 str. 40]
gi|260156888|gb|EEW91968.1| ribosomal protein S1 [Brucella suis bv. 4 str. 40]
Length = 537
Score = 546 bits (1408), Expect = e-153, Method: Composition-based stats.
Identities = 340/522 (65%), Positives = 422/522 (80%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I
Sbjct: 3 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RLLEVVE VE+Y QISL +ARDR+P +G ++D LPPMDFGR+A QSAKQVI+QK
Sbjct: 63 LQRLLEVVENVEDYATQISLFMARDRNPDAQVGDFIADQLPPMDFGRIAAQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR
Sbjct: 123 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV
Sbjct: 183 IRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S D+SIDPVGACVGMRG RVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL
Sbjct: 243 VSRDASIDPVGACVGMRGFRVQAVVAELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVL 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+
Sbjct: 303 DEDAERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEFAERSNL 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM+A+NVDE++ +L +EGFA VEELA V EI+SI+GFDE+TA EIQ RAREYLE I+
Sbjct: 363 FMEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREYLERIE 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ +ELGV++EL +PG+ + + VA+GE+G+KTMED AG +VDDL+GW E K G+
Sbjct: 423 AEQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERKDGDT 482
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523
G L+ + E M++ AR K GWI +E++A
Sbjct: 483 INHSGVLTPFDLSRVDAEQMVLAARLKAGWITEEELAAASED 524
>gi|163757748|ref|ZP_02164837.1| transcription elongation factor NusA [Hoeflea phototrophica DFL-43]
gi|162285250|gb|EDQ35532.1| transcription elongation factor NusA [Hoeflea phototrophica DFL-43]
Length = 550
Score = 546 bits (1408), Expect = e-153, Method: Composition-based stats.
Identities = 344/516 (66%), Positives = 431/516 (83%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSANRLELLQIADAVA EKSIDR++V++ MAD+IQKAARS YG+ S+IR +IN +TG+I
Sbjct: 7 VSANRLELLQIADAVAREKSIDREIVIAAMADAIQKAARSRYGSESNIRADINAKTGEIK 66
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RLLEVVE E+Y+ QI L +ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK
Sbjct: 67 LQRLLEVVEHAEDYSTQIPLMLARDRNPDAQLGDFIADPLPPMDFGRIAAQSAKQVIVQK 126
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQ+ EFKD++GE+++GTVKRVEYGNVIVDLG +G++RRDETI RE R GDR
Sbjct: 127 VREAERDRQFDEFKDRIGEVVNGTVKRVEYGNVIVDLGRGEGIVRRDETIPREAFRYGDR 186
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+++++V+RDPGSRAK+AV
Sbjct: 187 IRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIEIRSVARDPGSRAKIAV 246
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSP ATF++NAL+PA V KVVL
Sbjct: 247 ISNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPSPATFIVNALQPAEVAKVVL 306
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TEEE+S RQK+FNERTQ
Sbjct: 307 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDILTEEEESQRRQKEFNERTQL 366
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM+A++VDE++ +L +EGF+ VEE+A V + EI +IEGFD+ETA E+Q RAREYL+ ++
Sbjct: 367 FMEALDVDEMVGQVLASEGFSQVEEVAYVDLGEITAIEGFDDETAEELQTRAREYLDKVE 426
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
L K +ELGV +EL SI G+ + + VALG + IKT+ED AGC+VDDL GWSE K G
Sbjct: 427 AELDAKRKELGVEDELRSIAGMTTAMMVALGGDEIKTVEDFAGCAVDDLTGWSERKDGET 486
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517
++FDG + + + + ESMI+ AR +GWI ++++
Sbjct: 487 KRFDGLFTGMDITRAEAESMILSARLAVGWITEDEL 522
>gi|254780788|ref|YP_003065201.1| transcription elongation factor NusA [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040465|gb|ACT57261.1| transcription elongation factor NusA [Candidatus Liberibacter
asiaticus str. psy62]
Length = 526
Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats.
Identities = 526/526 (100%), Positives = 526/526 (100%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI
Sbjct: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ
Sbjct: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD
Sbjct: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA
Sbjct: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV
Sbjct: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ
Sbjct: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI
Sbjct: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN
Sbjct: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDAS 526
IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDAS
Sbjct: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDAS 526
>gi|298293854|ref|YP_003695793.1| transcription termination factor NusA [Starkeya novella DSM 506]
gi|296930365|gb|ADH91174.1| transcription termination factor NusA [Starkeya novella DSM 506]
Length = 536
Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats.
Identities = 319/512 (62%), Positives = 399/512 (77%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+VSANRLELLQIADAVA EKSIDR +V++ M D+I KAARS YG +DI EI+P TG++
Sbjct: 3 VVSANRLELLQIADAVAREKSIDRSIVIAAMEDAIAKAARSRYGAETDIHAEISPRTGEL 62
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
L R L VV++V+N +I L AR +P+ +G ++D LPP DFGR+A QSAKQVI+Q
Sbjct: 63 RLARHLLVVDQVDNPAVEIDLDGARRLNPAAQVGDSIADTLPPFDFGRIAAQSAKQVIVQ 122
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
KVREAERDRQY E+KD++GEI +G VKRVEYGNV+VDLG + +RRDE + RE + GD
Sbjct: 123 KVREAERDRQYEEYKDRIGEITNGAVKRVEYGNVVVDLGRGEASLRRDELLPREVFKTGD 182
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
R+++Y+YDVRREQRGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+A
Sbjct: 183 RIRAYVYDVRREQRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIA 242
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATF++NAL PA V KVV
Sbjct: 243 VTSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDVATFIVNALAPAEVVKVV 302
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
LDED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ERT+
Sbjct: 303 LDEDRERIEVVVPDAQLSLAIGRRGQNVRLASQLTGWDIDIMTEAEESERRQKEFAERTK 362
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
F +A+++DE++ LL +EGFA VEE+A V ++E+ASIEGFDE+TA E+Q RA +L I
Sbjct: 363 MFAEALDLDEMMGQLLASEGFASVEEIAYVPVNELASIEGFDEDTAQELQNRALNHLAQI 422
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ L + +ELGV + L +PG+ S + VA GEN IKT+EDLAGC+ DDL GW+E K G
Sbjct: 423 EADLDARRKELGVEDALREVPGVTSAMLVAFGENDIKTVEDLAGCATDDLTGWTERKDGE 482
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512
+ G L ++ E++I+ AR + GWI
Sbjct: 483 TVRIAGALDGFDLSREDAEALIMQARVRAGWI 514
>gi|153008085|ref|YP_001369300.1| transcription elongation factor NusA [Ochrobactrum anthropi ATCC
49188]
gi|151559973|gb|ABS13471.1| NusA antitermination factor [Ochrobactrum anthropi ATCC 49188]
Length = 535
Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats.
Identities = 342/518 (66%), Positives = 419/518 (80%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I
Sbjct: 3 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RLLEVVE VE+Y QISL ARDR+P +G ++D LPPMDFGR+A QSAKQVI+QK
Sbjct: 63 LQRLLEVVEHVEDYATQISLFTARDRNPDAQVGDFIADQLPPMDFGRIAAQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR
Sbjct: 123 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+++Y+YDVRREQRGPQ+ LSRTHP FM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV
Sbjct: 183 IRAYVYDVRREQRGPQIFLSRTHPSFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL
Sbjct: 243 VSRDASIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVL 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+
Sbjct: 303 DEDAERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEFTERSTL 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM A+NVDE++ +L +EGFA VEELA V+ EIASI+GFDE+TA EIQ RAREYL+ I+
Sbjct: 363 FMDALNVDEMVGQVLASEGFASVEELAYVEPGEIASIDGFDEDTAGEIQERAREYLDRIE 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ +ELGV +EL +PGI + + VA+GE+G+KTMED AG +VDDL+GW E K G
Sbjct: 423 SEQDDRRKELGVEDELRELPGITTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERKDGET 482
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVAD 519
G SS + E M++ AR K GWI +E++A
Sbjct: 483 VAHSGIFSSFDVSRVDAEQMVLTARLKAGWITEEELAS 520
>gi|146337225|ref|YP_001202273.1| transcription elongation factor NusA [Bradyrhizobium sp. ORS278]
gi|146190031|emb|CAL74023.1| Transcription elongation protein nusA (N utilization substance
protein A) (L factor) [Bradyrhizobium sp. ORS278]
Length = 535
Score = 544 bits (1402), Expect = e-152, Method: Composition-based stats.
Identities = 327/528 (61%), Positives = 409/528 (77%), Gaps = 3/528 (0%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSANRLELLQIADAVA EKSIDR +V++ M D+I KAAR+ YG+ +D+ EI+P G++
Sbjct: 3 VSANRLELLQIADAVAREKSIDRGIVIAAMEDAIAKAARARYGSETDVHAEIDPRKGELR 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L R + VVE+VEN + QISL AR +P IG ++D LPP+++GR+A QSAKQVI+QK
Sbjct: 63 LSRHMLVVEKVENPSNQISLDDARRANPGAQIGDTIADTLPPLEYGRIAAQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQY EFKD++G+I++G VKRVEYG+VI+DLG + +IRRDE + RE R GDR
Sbjct: 123 VREAERDRQYQEFKDRIGDIVNGVVKRVEYGSVILDLGRGEAIIRRDEMLPREVFRNGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++Y++DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V
Sbjct: 183 VRAYVFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V KVV+
Sbjct: 243 VSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVAKVVI 302
Query: 302 DEDVGRIEVIVPK--EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQ DF T
Sbjct: 303 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFENST 362
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+ FM+++NVDE++ LL +EGF VEELA V + ++ASIEGFDEETA E+Q RARE+LE
Sbjct: 363 RVFMESLNVDEVVGQLLASEGFTSVEELALVDLKDLASIEGFDEETATELQTRAREFLEQ 422
Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG- 478
+ L+ K +ELGV + L +PG+ SK+ V GEN IKT++DLAGC+ DDL+GW E K
Sbjct: 423 QEAELEAKRKELGVEDALKDVPGVTSKMLVKFGENDIKTVDDLAGCATDDLVGWVERKDG 482
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDAS 526
G KF G L L +D E+M++ AR K GWI + +A E +D +
Sbjct: 483 GEQTKFAGILDGLDVSRDDAEAMVMQARVKAGWITEADLAKGEAEDEA 530
>gi|150398625|ref|YP_001329092.1| transcription elongation factor NusA [Sinorhizobium medicae WSM419]
gi|150030140|gb|ABR62257.1| NusA antitermination factor [Sinorhizobium medicae WSM419]
Length = 552
Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats.
Identities = 356/517 (68%), Positives = 439/517 (84%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YG+ S+IR +INP+TG+I
Sbjct: 13 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGSESNIRADINPKTGEIR 72
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RLLEVVE+ E+Y+ QI +++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK
Sbjct: 73 LQRLLEVVEKAEDYSTQIPIELARDRNPDAKLGDFIADPLPPMDFGRIAAQSAKQVIVQK 132
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQY EFKD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDR
Sbjct: 133 VREAERDRQYDEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENMRYGDR 192
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++++YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+G++Q+K+V+RDPGSRAK+AV
Sbjct: 193 VRAFVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGVIQIKSVARDPGSRAKIAV 252
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD A+F++NAL+PA V KVVL
Sbjct: 253 VSNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPDPASFIVNALQPAEVAKVVL 312
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+FNERTQ
Sbjct: 313 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQKEFNERTQL 372
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM+A++VDE++ +L +EGFA VEELA V + EIASIEGFDEET+ EIQ RAREYLE I+
Sbjct: 373 FMEALDVDEMVGQVLASEGFAQVEELAYVDLDEIASIEGFDEETSNEIQTRAREYLEKIE 432
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ K +ELGV++EL +I G++S++ VALGE GIKT+ED AGC+ DDL+GW E K G
Sbjct: 433 AEMDAKRKELGVADELRTINGLNSQMLVALGEEGIKTIEDFAGCAADDLVGWVERKDGET 492
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518
++F+G S L +++ E+MI+ AR GWI +E +A
Sbjct: 493 KRFEGTFSKLEVTREEAEAMIVQARLAAGWITEEDLA 529
>gi|319779771|ref|YP_004139247.1| transcription termination factor NusA [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317165659|gb|ADV09197.1| transcription termination factor NusA [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 531
Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats.
Identities = 334/521 (64%), Positives = 422/521 (80%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+VSANRLELLQIADAVA EKSID+ +V++ MAD+IQKAARS YG ++IR +INP TG++
Sbjct: 2 VVSANRLELLQIADAVAREKSIDKSIVIAAMADAIQKAARSRYGQETNIRADINPNTGEM 61
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
L RL+EVVE+V++Y QI++ AR+R+P +G +++ LPPMDFGR+A QSAKQVI+Q
Sbjct: 62 KLQRLMEVVEKVDDYATQIAISSARERNPDAQLGDFIAEQLPPMDFGRIAAQSAKQVIVQ 121
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
KVREAERDRQY E+KD++GEI++GTVKRVEYGNVIVDLG + +IRRDE I REN + GD
Sbjct: 122 KVREAERDRQYDEYKDRIGEIVNGTVKRVEYGNVIVDLGRGEAIIRRDELIPRENYKYGD 181
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
RV++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+A
Sbjct: 182 RVRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIA 241
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSP +A+F++NAL+PA V KVV
Sbjct: 242 VISRDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPSAASFIVNALQPAEVAKVV 301
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
LDED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ER+
Sbjct: 302 LDEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFVERSS 361
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
FM+A++VDE++ +L +EGF VEE+A V EIASI+GFDE+TA EIQ RAREYLE I
Sbjct: 362 LFMEALDVDEMVGQVLASEGFTSVEEVAYVDSGEIASIDGFDEDTASEIQTRAREYLEKI 421
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ K + LGVS+EL IPG+ + + V LGE+G+KT+ED AG + DDL GW E K G
Sbjct: 422 EAEHDDKRKALGVSDELREIPGVTTAMMVTLGEDGVKTIEDFAGYAADDLTGWKERKDGE 481
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEE 521
+ + G L++ G + E M++ AR K GWI ++++A EE
Sbjct: 482 TKVYPGVLANHGVTRADAEQMVLAARLKAGWITEDELAAEE 522
>gi|121602814|ref|YP_989501.1| transcription elongation factor NusA [Bartonella bacilliformis
KC583]
gi|120614991|gb|ABM45592.1| transcription elongation protein nusA [Bartonella bacilliformis
KC583]
Length = 537
Score = 543 bits (1400), Expect = e-152, Method: Composition-based stats.
Identities = 321/523 (61%), Positives = 416/523 (79%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
+SANRLE+LQIADAVA EKSIDR++V+S MAD+IQKAARS YG ++IR EIN +TG+I
Sbjct: 3 ISANRLEILQIADAVAREKSIDREIVISAMADAIQKAARSRYGQETNIRAEINSKTGEIK 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RLL++V+ VE+YT +ISL A IG + D LP MDFGR+A QSAKQVI+QK
Sbjct: 63 LQRLLQIVDIVEDYTTEISLSDALKHQADAKIGDFIFDLLPSMDFGRIAAQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VR+AER+ Q+ EFK+KVGEIISGTVKRVEYGNVIVDLG + V+RRDE I E+ GDR
Sbjct: 123 VRDAERNHQFEEFKNKVGEIISGTVKRVEYGNVIVDLGRGEAVVRRDELIPCESFHYGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+++++ DV RE RGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV
Sbjct: 183 IRAFVNDVHREPRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATFV+NAL+PA V+KV+L
Sbjct: 243 VSRDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAATFVVNALQPAEVSKVIL 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S NRQK+F ER++
Sbjct: 303 DEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWNIDILTEQEESENRQKEFTERSKL 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM++++VD+I+ ++ +EGF+ +EE+A V + EIASI+GFD E A EIQ RAREYLE +
Sbjct: 363 FMESLDVDKIVGQVMASEGFSSIEEIAYVGLDEIASIDGFDSEIATEIQKRAREYLENKE 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
L +K + L V++EL ++PGI + + +A+GE+G+KTM+D AG +VDDL+GW E K G
Sbjct: 423 KELDEKRKSLCVADELQTLPGITNAMLIAIGEDGVKTMDDFAGYAVDDLVGWRERKKGQT 482
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524
+ F G L+ + E+MI++AR + GWI + + E+ ++
Sbjct: 483 QNFPGILTPFDITRADAEAMILYARVQAGWITQTDLTTEDPEE 525
>gi|222147147|ref|YP_002548104.1| transcription elongation factor NusA [Agrobacterium vitis S4]
gi|221734137|gb|ACM35100.1| N-utilization substance protein A [Agrobacterium vitis S4]
Length = 538
Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats.
Identities = 349/512 (68%), Positives = 424/512 (82%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YG+ ++IR +IN +TG+I
Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGSETNIRADINSKTGEIR 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RLLEVVE VE+Y QI+L++ARDR+ +G ++DPLPPMDFGR+A QSAKQVI+QK
Sbjct: 63 LQRLLEVVETVEDYGTQIALELARDRNVDAKLGDYIADPLPPMDFGRIAAQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQ+ EFKD+VGEII+GTVKRVEYGNVIVDLG +G+IRRDE I RE +R GDR
Sbjct: 123 VREAERDRQFDEFKDRVGEIINGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRETMRYGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+G++Q+K+V+RDPGSRAK+AV
Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGVIQIKSVARDPGSRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D A+F++NAL+PA V KVVL
Sbjct: 243 ISNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSADPASFIVNALQPAEVAKVVL 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+FNERT
Sbjct: 303 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDIMTEAEESERRQKEFNERTNL 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM A++VDE++ +L +EGFA VEELA V + EIASI+GFD +TA EIQ RAREYLE ++
Sbjct: 363 FMDALDVDEMVGQVLASEGFAQVEELAYVDLEEIASIDGFDGDTAEEIQTRAREYLEKLE 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
L K + LGVS+EL SI G+ +++ VALG +GIKT+ED AGC+ DDL+GWSE K G
Sbjct: 423 AELDAKRKALGVSDELRSIDGMTTQMLVALGGDGIKTVEDFAGCAADDLIGWSERKDGET 482
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
+KF+G S + + + E MI+ AR GWI
Sbjct: 483 KKFEGLFSKIDISRTEAEQMIVQARLAAGWIT 514
>gi|222084328|ref|YP_002542857.1| N-utilization substance protein A [Agrobacterium radiobacter K84]
gi|221721776|gb|ACM24932.1| N-utilization substance protein A [Agrobacterium radiobacter K84]
Length = 534
Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats.
Identities = 358/524 (68%), Positives = 436/524 (83%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YGT S+IR +INP+TG+I
Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGTESNIRADINPKTGEIR 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RLLEVVE+ E+Y+ QI L++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK
Sbjct: 63 LQRLLEVVEKAEDYSTQIPLELARDRNPDAALGDFIADPLPPMDFGRIAAQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQ+ EFKD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN R GDR
Sbjct: 123 VREAERDRQFDEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENFRYGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+QVK+V+RDPGSRAK+AV
Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQVKSVARDPGSRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS + A FV+NAL+PA V+KVVL
Sbjct: 243 ISNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSNEPANFVVNALQPAEVSKVVL 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+FNERT
Sbjct: 303 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDIMTEAEESERRQKEFNERTNL 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM A++VDE++ +L +EGFA VEELA V++ EIASI+GFDEETA EIQ RAREYLE ++
Sbjct: 363 FMDALDVDEMVGQVLASEGFAAVEELAYVELDEIASIDGFDEETAQEIQQRAREYLERLE 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ +K + LGV++EL I G+ +++ VALGE+GIKT+ED AGC+ DDL+GWSE K G
Sbjct: 423 AEMDEKRKALGVADELRQINGMTAQMMVALGEDGIKTIEDFAGCAADDLVGWSERKNGET 482
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525
+KF+G S L + + E MI+ AR GWI + +A+E + A
Sbjct: 483 KKFEGLFSKLEISRVEAEQMIVQARLSAGWITEADLANETEEVA 526
>gi|254718200|ref|ZP_05180011.1| transcription elongation factor NusA [Brucella sp. 83/13]
gi|265983158|ref|ZP_06095893.1| transcription elongation factor NusA [Brucella sp. 83/13]
gi|306837714|ref|ZP_07470583.1| transcription termination factor NusA [Brucella sp. NF 2653]
gi|306842729|ref|ZP_07475371.1| transcription termination factor NusA [Brucella sp. BO2]
gi|306843580|ref|ZP_07476181.1| transcription termination factor NusA [Brucella sp. BO1]
gi|264661750|gb|EEZ32011.1| transcription elongation factor NusA [Brucella sp. 83/13]
gi|306276271|gb|EFM57971.1| transcription termination factor NusA [Brucella sp. BO1]
gi|306287073|gb|EFM58578.1| transcription termination factor NusA [Brucella sp. BO2]
gi|306407272|gb|EFM63482.1| transcription termination factor NusA [Brucella sp. NF 2653]
Length = 537
Score = 543 bits (1398), Expect = e-152, Method: Composition-based stats.
Identities = 341/522 (65%), Positives = 423/522 (81%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I
Sbjct: 3 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RLLEVVE VE+Y QISL +ARDR+P +G ++D LPPMDFGR+A QSAKQVI+QK
Sbjct: 63 LQRLLEVVENVEDYATQISLFMARDRNPDAQVGDFIADQLPPMDFGRIAAQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR
Sbjct: 123 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV
Sbjct: 183 IRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL
Sbjct: 243 VSRDASIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVL 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+
Sbjct: 303 DEDAERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEFAERSNL 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM+A+NVDE++ +L +EGFA VEELA V EI+SI+GFDE+TA EIQ RAREYLE I+
Sbjct: 363 FMEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREYLERIE 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ +ELGV++EL +PG+ + + VA+GE+G+KTMED AG +VDDL+GW E K G+
Sbjct: 423 AEQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERKDGDT 482
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523
G L+ + E M++ AR K GWI +E++A
Sbjct: 483 INHSGVLTPFDLSRVDAEQMVLAARLKAGWITEEELAAASED 524
>gi|319403631|emb|CBI77216.1| transcription elongation protein [Bartonella rochalimae ATCC
BAA-1498]
Length = 537
Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats.
Identities = 322/523 (61%), Positives = 416/523 (79%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
+SANRLELLQIADAVA EKSIDR++V+S MAD+IQKAARS YG ++IR EIN +TG+I
Sbjct: 3 ISANRLELLQIADAVAREKSIDREIVISAMADAIQKAARSRYGQETNIRAEINSKTGEIK 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RLL+VV+ VE+YT +I+L A R +G +SD LPPMDFGR+A QSAKQVI+QK
Sbjct: 63 LQRLLKVVDVVEDYTTEIALSDALKRKEDAKVGDFLSDLLPPMDFGRIATQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VR+AER+ Q+ EFK+K+GEIISGTVKRVEYGNVIVD+G + ++RRDE I RE+ GDR
Sbjct: 123 VRDAERNHQFEEFKNKIGEIISGTVKRVEYGNVIVDIGRGEAIVRRDELIPRESFHYGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++++++DV RE RGPQV LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV
Sbjct: 183 IRAFVHDVHREPRGPQVFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATF++NAL+PA V+KVVL
Sbjct: 243 VSRDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAATFIVNALQPAEVSKVVL 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S NR K+F ER++
Sbjct: 303 DEDAERIEVVVPGDQLSLAIGRRGQNVRLASQLTGWNIDILTEQEESENRHKEFTERSKL 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM+ ++VDE++ ++ +EGF +EE+A V + EI SI+GFD +TA EIQ RAREYLE +
Sbjct: 363 FMETLDVDEMVGQVMASEGFTSIEEIAYVNLEEIESIDGFDHDTASEIQNRAREYLERKE 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
L +K +ELGVS+EL ++PGI + + V +GE+G+KT+ED AG +VDDL+GW E K G
Sbjct: 423 KELNEKRKELGVSDELQTLPGITNAMLVVIGEDGVKTIEDFAGYAVDDLVGWRECKEGQT 482
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524
+ F G L+ + E+M++ AR + GWI + + + +
Sbjct: 483 QNFPGILTPFDITRADAEAMVLAARVQAGWINQADLIKQHPVE 525
>gi|323136838|ref|ZP_08071919.1| NusA antitermination factor [Methylocystis sp. ATCC 49242]
gi|322398155|gb|EFY00676.1| NusA antitermination factor [Methylocystis sp. ATCC 49242]
Length = 532
Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats.
Identities = 334/522 (63%), Positives = 415/522 (79%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSANRLE+LQIADAVA EKSIDR +V++ M D++QKAARS YG +++R EINP TG++
Sbjct: 3 VSANRLEILQIADAVAREKSIDRSIVIASMEDALQKAARSRYGQETEVRAEINPRTGEVR 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
RLLEVV++VEN QI+++ AR R+P+ G +S+ LPP DFGR+A QSAKQ+I+QK
Sbjct: 63 FSRLLEVVDKVENDATQIAIEDARKRNPAAQAGDWISETLPPFDFGRIAAQSAKQIIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQY EFKD++GEI++G VKRVEYGNVI+DLG +GVIRRDE I RE RPGDR
Sbjct: 123 VREAERDRQYEEFKDRIGEIVNGVVKRVEYGNVIIDLGRGEGVIRRDEMIPREMFRPGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++Y+YDVRREQRGPQ+ LSRTHPQFM KLF EVPEIY+G+++VK+V+RDPGSRAK+AV
Sbjct: 183 ARAYVYDVRREQRGPQIFLSRTHPQFMAKLFKQEVPEIYDGVIEVKSVARDPGSRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S DSSIDPVGACVGMRGSRVQAVV EL+ E+IDI+ WS D+ATF++NAL+PA V KVVL
Sbjct: 243 VSRDSSIDPVGACVGMRGSRVQAVVQELQGERIDIIPWSVDAATFIVNALQPAEVVKVVL 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ERT
Sbjct: 303 DEDSSRIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFVERTNT 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM AI+VDE++ LL +EGF VE+LA V++SE+ASIEGFDE+TA EIQ RAR YL+ ++
Sbjct: 363 FMTAIDVDEVVGRLLASEGFRSVEDLAYVELSELASIEGFDEDTATEIQNRARAYLDKLE 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ + ELGVS+EL I G+ + + V LGEN +KTMED AGC DDL+GWSE K G
Sbjct: 423 AENEARRVELGVSDELREIDGMTTAMMVRLGENDVKTMEDFAGCVPDDLVGWSEKKDGET 482
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523
K +GF + +++ E+MI+ AR ++GWIEK E
Sbjct: 483 TKHEGFFEGIELSREEAEAMIMAARVRVGWIEKPAPEAETEA 524
>gi|110636252|ref|YP_676460.1| transcription elongation factor NusA [Mesorhizobium sp. BNC1]
gi|110287236|gb|ABG65295.1| NusA antitermination factor [Chelativorans sp. BNC1]
Length = 534
Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats.
Identities = 335/518 (64%), Positives = 416/518 (80%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSANRLELLQIADAVA EKSID+ +V+ MAD+IQKAARS YG ++IR +IN +TG++
Sbjct: 3 VSANRLELLQIADAVAREKSIDKTIVIQAMADAIQKAARSRYGQETNIRADINAQTGEMK 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RL+EVVE VE QIS+ AR R+P G +++ LPPMDFGR+A QSAKQVI+QK
Sbjct: 63 LQRLMEVVENVEEPARQISIVDARTRNPDAQAGDFIAEQLPPMDFGRIAAQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I RE+ + GDR
Sbjct: 123 VREAERDRQYEEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDELIPRESFKYGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV
Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ ++A+F++NAL+PA V+KVVL
Sbjct: 243 ISHDSSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWNENAASFIVNALQPAEVSKVVL 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TEEE+S RQK+F ER+
Sbjct: 303 DEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEEEESQRRQKEFTERSNL 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM A+NVDE++ +L +EGF VEE+A V EI+SI+GFDE+TA EIQ RAREYLE I+
Sbjct: 363 FMDALNVDEMVGQVLASEGFTSVEEIAYVDADEISSIDGFDEDTAEEIQARAREYLERIE 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
K RELGVS++L IPG+ + + V LGE+G+KT+ED AG +VDDL+GW E K G
Sbjct: 423 AERDAKRRELGVSDDLREIPGMTTAMMVKLGEDGVKTIEDFAGYAVDDLVGWRERKDGEN 482
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVAD 519
+ F G S L + + E M++ AR KMGWI ++ +
Sbjct: 483 KFFPGVFSDLDLSRAEAEQMVVAARLKMGWISEDDLQS 520
>gi|158421642|ref|YP_001522934.1| transcription elongation factor NusA [Azorhizobium caulinodans ORS
571]
gi|158328531|dbj|BAF86016.1| transcription termination factor [Azorhizobium caulinodans ORS 571]
Length = 532
Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats.
Identities = 320/512 (62%), Positives = 404/512 (78%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSANRLELLQIADAVA EK+IDR +V++ M D+I KAARS YG +DI EINP TG++
Sbjct: 4 VSANRLELLQIADAVAREKTIDRGIVIAAMEDAIAKAARSRYGQETDIHAEINPRTGELR 63
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L R L VV+EVEN +I+L AR +P+ +G ++D LPP DFGR+A QSAKQVI+QK
Sbjct: 64 LARHLLVVDEVENSATEITLDGARRHNPAAQVGDTIADTLPPFDFGRIAAQSAKQVIVQK 123
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQY EFKD++ E+++G VKRVEYGNV+VDLG + ++RRDE + RE ++ GDR
Sbjct: 124 VREAERDRQYDEFKDRISEVVNGLVKRVEYGNVVVDLGRGEAILRRDELLPREVVKTGDR 183
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+++YIYDVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+AV
Sbjct: 184 IRAYIYDVRREPRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIAV 243
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S D S+DPVGACVGMRGSRVQAVV EL+ EKIDI+ W+PD ATF++NAL PA V KVVL
Sbjct: 244 ISRDQSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNPDIATFIVNALAPAEVVKVVL 303
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ERT+
Sbjct: 304 DEDRERIEVVVPDAQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQKEFAERTKM 363
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F +A+++DE++ LL +EGF VEE+A V +SE+ASIEGFDEETA E+Q RA ++L ++
Sbjct: 364 FAEALDLDEMMGQLLTSEGFTSVEEIAYVPVSELASIEGFDEETAAELQARALKHLSDVE 423
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
L + RELGV ++L ++PG+ SK+ VA G+N IK++EDLAGC+ DDL+GW+E K G
Sbjct: 424 EALDNERRELGVEDDLKTVPGVTSKMLVAFGKNDIKSVEDLAGCATDDLVGWTERKDGET 483
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
+F G L ++ ES+I+ AR GWI
Sbjct: 484 VRFPGALDGFELSREDAESLIMQARIAAGWIS 515
>gi|319405101|emb|CBI78705.1| transcription elongation protein [Bartonella sp. AR 15-3]
Length = 537
Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats.
Identities = 324/523 (61%), Positives = 418/523 (79%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
+SANRLELLQIADAVA EKSIDR++V+S MAD+IQKAARS YG ++IR EIN +TG+I
Sbjct: 3 ISANRLELLQIADAVAREKSIDREIVISAMADAIQKAARSRYGQETNIRAEINSKTGEIK 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RLL+VV+ VE+YT +I+L A R +G +SD LPPMDFGR+A QSAKQVI+QK
Sbjct: 63 LQRLLKVVDIVEDYTTEIALSDALKRKEDAKVGDFLSDLLPPMDFGRIATQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VR+AER+ Q+ EFK+K+GEIISGTVKRVEYGNVIVD+G + ++RRDE I RE+ R GDR
Sbjct: 123 VRDAERNHQFEEFKNKIGEIISGTVKRVEYGNVIVDIGRGEAIVRRDELIPRESFRYGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++++++DV RE RGPQV LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV
Sbjct: 183 IRAFVHDVHREPRGPQVFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATF++NAL+PA V+KVVL
Sbjct: 243 VSRDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAATFIVNALQPAEVSKVVL 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S NR K+F+ER++
Sbjct: 303 DEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWNIDILTEQEESENRHKEFSERSKL 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM+ ++VDE++ ++ +EGF +EE+A V + EI SI+GFD +TA EIQ RAR+YLE +
Sbjct: 363 FMETLDVDEMVGQVMASEGFISIEEIAYVDLEEIKSIDGFDHDTASEIQNRARKYLERKE 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
L +K ++LGVS+EL +PGI + + VA+GE+GIKTMED AG +VDDL+GW E K G
Sbjct: 423 KELNEKRKKLGVSDELQLLPGITNAMLVAIGEDGIKTMEDFAGYAVDDLVGWREFKEGQT 482
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524
+ F G L+ + E+M++ AR + GWI + + + +
Sbjct: 483 QNFPGILTPFDVTRADAEAMVLAARVQAGWINQTDLIKQHPVE 525
>gi|209883664|ref|YP_002287521.1| transcription elongation factor NusA [Oligotropha carboxidovorans
OM5]
gi|209871860|gb|ACI91656.1| transcription elongation factor NusA [Oligotropha carboxidovorans
OM5]
Length = 541
Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats.
Identities = 326/517 (63%), Positives = 409/517 (79%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSAN+LELLQIADAVA EKSIDR +V++ M D+I KAAR+ YG+ +D+ EI+ + G++
Sbjct: 4 VSANKLELLQIADAVAREKSIDRSIVIAAMEDAIAKAARARYGSETDVHAEIDSKKGELR 63
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L R + VVE VEN QISL+ A+ +P+ IG ++D LPP+++GR+A QSAKQVI+QK
Sbjct: 64 LSRHMLVVETVENPANQISLEDAKRANPTAQIGDTIADTLPPLEYGRIAAQSAKQVIVQK 123
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQY EFKD++GEI++G VKRVEYG+VIVDLG + ++RRDE + RE LR GDR
Sbjct: 124 VREAERDRQYQEFKDRIGEIVNGIVKRVEYGSVIVDLGRGEAIVRRDEMLPREALRNGDR 183
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+++YI+DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V
Sbjct: 184 IRAYIFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 243
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V KVV+
Sbjct: 244 ISRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVAKVVI 303
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQ DF T+
Sbjct: 304 DEDRERIEVVVPDTQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFENSTRV 363
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM+A+NVDE++ LL +EGF+ VEEL V + E+A IEGFDEETA E+Q RAREYLE ++
Sbjct: 364 FMEALNVDEVVGQLLASEGFSSVEELVLVDVRELAGIEGFDEETANELQSRAREYLEHLE 423
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
L+ K +ELGV + + +PGI KI V LGEN +KT+EDLAGC+ DDL+GW+E K G
Sbjct: 424 AELEAKRKELGVEDAMKDVPGITGKILVKLGENDVKTVEDLAGCATDDLVGWTERKDGET 483
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518
K DGFL + T +D+ E++I+ AR GWI + +A
Sbjct: 484 VKHDGFLDASETSRDEAEALIMQARLAAGWITEADLA 520
>gi|170750127|ref|YP_001756387.1| NusA antitermination factor [Methylobacterium radiotolerans JCM
2831]
gi|170656649|gb|ACB25704.1| NusA antitermination factor [Methylobacterium radiotolerans JCM
2831]
Length = 545
Score = 541 bits (1394), Expect = e-151, Method: Composition-based stats.
Identities = 320/513 (62%), Positives = 401/513 (78%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+VSANRLELLQIADAVA EK IDR +V+ M ++I KAARS YG +D+ EI+P+TG +
Sbjct: 3 VVSANRLELLQIADAVAREKVIDRSIVIDAMEEAIAKAARSRYGAETDVHAEIDPKTGAL 62
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
L R L VV++VEN +I+L AR +P +G V+SD LPP DFGRVA QSAKQVI+Q
Sbjct: 63 RLSRHLLVVDQVENDAREITLDQARRYNPGALVGDVISDTLPPFDFGRVAAQSAKQVIVQ 122
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
KVR+AER RQ+ E+KD++GEI++G VKRVEYGNVIVDLG +G++RRDE I RE RPGD
Sbjct: 123 KVRDAERARQFDEYKDRIGEILNGIVKRVEYGNVIVDLGRGEGIVRRDEMIPRETFRPGD 182
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
R++SY++DVR E RGPQ+ LSR+HPQFM KLF EVPEIY+GIV+VKAV+RDPGSRAK+A
Sbjct: 183 RIRSYLFDVRSEVRGPQIFLSRSHPQFMAKLFGQEVPEIYDGIVEVKAVARDPGSRAKIA 242
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATF++NAL+PA V KVV
Sbjct: 243 VISRDGSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSEDEATFIVNALQPAEVVKVV 302
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
LDE+ RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ERTQ
Sbjct: 303 LDEEADRIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFAERTQ 362
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
FM+A++VDE + LL AEGF +VEE+A V I E++ I+G DEET EIQ RA+++L I
Sbjct: 363 VFMEALDVDETVGQLLAAEGFRNVEEIAYVDIQELSGIQGLDEETGTEIQARAQDHLARI 422
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ + ELGVS+EL I GI + + VALGEN +KT+EDLAGC+ DDL+G++E +G +
Sbjct: 423 EQAHDARRTELGVSDELREIEGITTPMMVALGENDVKTVEDLAGCATDDLVGYTEGRGPD 482
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
+ G+L + + E++I+ AR K GWIE
Sbjct: 483 AVRHAGYLDGFDLSRAEAEALIMAARLKAGWIE 515
>gi|260461982|ref|ZP_05810227.1| NusA antitermination factor [Mesorhizobium opportunistum WSM2075]
gi|259032229|gb|EEW33495.1| NusA antitermination factor [Mesorhizobium opportunistum WSM2075]
Length = 531
Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats.
Identities = 332/513 (64%), Positives = 416/513 (81%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+VSANRLELLQIADAVA EKSID+ +V++ MAD+IQKAARS YG ++IR +INP TG++
Sbjct: 2 VVSANRLELLQIADAVAREKSIDKSIVIAAMADAIQKAARSRYGQETNIRADINPNTGEM 61
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
L RL+EVVE+V++Y QI++ AR+R+P +G +++ LPPMDFGR+A QSAKQVI+Q
Sbjct: 62 KLQRLMEVVEKVDDYATQIAISSARERNPDAQLGDFIAEQLPPMDFGRIAAQSAKQVIVQ 121
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
KVREAERDRQY E+KD++GEI++GTVKRVEYGNVIVDLG + +IRRDE I REN + GD
Sbjct: 122 KVREAERDRQYDEYKDRIGEIVNGTVKRVEYGNVIVDLGRGEAIIRRDELIPRENYKYGD 181
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
RV++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+A
Sbjct: 182 RVRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIA 241
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSP +A+F++NAL+PA V KVV
Sbjct: 242 VISRDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPSAASFIVNALQPAEVAKVV 301
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
LDED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ER+
Sbjct: 302 LDEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFVERSA 361
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
FM+A++VDE++ +L +EGF VEE+A V EIASI+GFDE+TA EIQ RAREYLE I
Sbjct: 362 LFMEALDVDEMVGQVLASEGFTSVEEVAYVDAGEIASIDGFDEDTASEIQTRAREYLEKI 421
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ K + LGVS+EL IPGI + + V LGE+G+KT+ED AG + DDL GW E K G
Sbjct: 422 EAEHDDKRKALGVSDELREIPGITTAMMVTLGEDGVKTIEDFAGYAADDLTGWKERKDGE 481
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
+ + G L++ G + E M+++AR K GWI
Sbjct: 482 TKVYPGVLANHGVSRADAEQMVLNARLKAGWIT 514
>gi|316931577|ref|YP_004106559.1| transcription termination factor NusA [Rhodopseudomonas palustris
DX-1]
gi|315599291|gb|ADU41826.1| transcription termination factor NusA [Rhodopseudomonas palustris
DX-1]
Length = 537
Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats.
Identities = 326/524 (62%), Positives = 411/524 (78%), Gaps = 3/524 (0%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSANRLELLQIADAVA EK+IDR +V++ M D+I KAAR+ YG+ +D+ EI+P+ G++
Sbjct: 3 VSANRLELLQIADAVAREKTIDRGIVIAAMEDAIAKAARARYGSETDVHAEIDPKKGELR 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L R + VVE+VEN QISLK A+ +P IG ++D LPP+++GR+A QSAKQVI+QK
Sbjct: 63 LSRHMLVVEQVENPANQISLKDAQRANPGAQIGDTIADTLPPLEYGRIAAQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQY+EFKD++G+I++G VKRVEYG+VIVDLG + +IRRDE + RE+ R GDR
Sbjct: 123 VREAERDRQYMEFKDRIGDIVNGVVKRVEYGSVIVDLGRGEAIIRRDEMLPRESFRNGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++Y++DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V
Sbjct: 183 VRAYVFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V+KVV+
Sbjct: 243 VSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVSKVVI 302
Query: 302 DEDVGRIEVIVPK--EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQ DF + T
Sbjct: 303 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTETEESERRQADFEKTT 362
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+ FM A+NVDEI+ LL +EGF VEELA V E+ASIEGFDEETA E+Q RAREYL+
Sbjct: 363 RAFMDALNVDEIVGQLLASEGFTSVEELALVDPRELASIEGFDEETAAELQTRAREYLDQ 422
Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG- 478
I+ L+ + ELGV + L +PG+ SK+ V GEN +KT+EDLAGC+ DDL+GW+E K
Sbjct: 423 IESELEARRTELGVEDALKDVPGVTSKMLVKFGENDVKTVEDLAGCATDDLVGWTERKDG 482
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEV 522
G K+ G L + ++ E +I+ AR K GWI++ ++A +E
Sbjct: 483 GEPVKYPGILDGMELSREDAEHLIMQARVKAGWIDESELASDEE 526
>gi|220924484|ref|YP_002499786.1| NusA antitermination factor [Methylobacterium nodulans ORS 2060]
gi|219949091|gb|ACL59483.1| NusA antitermination factor [Methylobacterium nodulans ORS 2060]
Length = 536
Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats.
Identities = 325/525 (61%), Positives = 408/525 (77%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+VSANRLELLQIADAVA EK IDR +V+ M ++I KAARS YG +D+ EI+P TG +
Sbjct: 3 VVSANRLELLQIADAVAREKVIDRSIVIGAMEEAIAKAARSRYGAETDVHAEIDPRTGAL 62
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
L R + VV++VEN +I L+ AR +P+ +G V++D LPP DFGRVA QSAKQVI+Q
Sbjct: 63 RLSRHMLVVDQVENDAREIDLETARRHNPAAQVGDVIADTLPPFDFGRVAAQSAKQVIVQ 122
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
KVR+AERDRQY E+KD++GEI++G VKRVEYGNVIVDLG +G++RRDE+I RE RPGD
Sbjct: 123 KVRDAERDRQYEEYKDRIGEIVNGLVKRVEYGNVIVDLGRGEGIVRRDESIPRETFRPGD 182
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
R+++Y++DVRRE RGPQ+ LSR+HPQFM KLF EVPEIY+GIV+VKAV+RDPGSRAK+A
Sbjct: 183 RIRAYLFDVRREVRGPQIFLSRSHPQFMAKLFAQEVPEIYDGIVEVKAVARDPGSRAKIA 242
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATF++NAL+PA V KVV
Sbjct: 243 VISRDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSQDQATFIVNALQPAEVVKVV 302
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
LDE+ RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ERT
Sbjct: 303 LDEEADRIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFIERTN 362
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
FM+A++VDE + LL AEGF VEE+A V+ +IA+I+G DEET EIQ RAR+YL I
Sbjct: 363 AFMEALDVDETVGQLLAAEGFRSVEEIAYVEPGDIANIQGLDEETGAEIQTRARDYLARI 422
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ + +ELGVS+EL I GI + + VALGEN +KT+EDLAGC+ DDL+G++E +G
Sbjct: 423 ESENDARRKELGVSDELREIDGITTPMLVALGENDVKTIEDLAGCATDDLVGYTEGRGAE 482
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525
+ G+L + + E+MI+ AR + GWIE A E + A
Sbjct: 483 AVRHAGYLDGFDLSRAEAEAMIVAARVRAGWIEAAPEAPAEDEQA 527
>gi|154244252|ref|YP_001415210.1| transcription elongation factor NusA [Xanthobacter autotrophicus
Py2]
gi|154158337|gb|ABS65553.1| NusA antitermination factor [Xanthobacter autotrophicus Py2]
Length = 531
Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats.
Identities = 314/512 (61%), Positives = 405/512 (79%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSANRLELLQIADAVA EKSIDR +V++ M D+I KAARS YG +DI +IN +TG++
Sbjct: 4 VSANRLELLQIADAVAREKSIDRSIVIAAMEDAIAKAARSRYGQETDIHADINAKTGELR 63
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L R L VV+EVEN +I+L AR +P+ +G ++D LPP DFGR+A QSAKQVI+QK
Sbjct: 64 LARHLLVVDEVENTATEITLDGARRHNPAAQVGDTIADTLPPFDFGRIAAQSAKQVIVQK 123
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQY E+KD++G++++G VKRVEYGNV+VDLG +G++RRDE + RE ++ GDR
Sbjct: 124 VREAERDRQYDEYKDRIGDVVNGLVKRVEYGNVVVDLGRGEGILRRDELLPRETVKTGDR 183
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+++Y+YDVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+AV
Sbjct: 184 IRAYVYDVRREPRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIAV 243
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S D S+DPVGACVGMRGSRVQAVV EL+ EKIDI+ W+PD ATF++NAL PA V KVVL
Sbjct: 244 ISRDQSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNPDIATFIVNALAPAEVVKVVL 303
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP QLSLAIGRRGQNVRLA+QLTGW IDI+TE+E+S RQK+F ERT+
Sbjct: 304 DEDRERIEVVVPDAQLSLAIGRRGQNVRLATQLTGWDIDIMTEQEESERRQKEFAERTKM 363
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F +A+++DE++ LL +EGF VEE+A V++ E+ASIEGFDE+TA E+Q RA ++L ++
Sbjct: 364 FAEALDLDEMMGQLLTSEGFTSVEEIAYVQLQELASIEGFDEDTAAELQARALKHLAEVE 423
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
L + ELGV ++L S+PG+ SK+ VA GEN IK++EDLAGC+ DDL+GW+E K G
Sbjct: 424 EALDARRIELGVDDDLKSVPGVTSKMLVAFGENDIKSVEDLAGCATDDLIGWTERKDGET 483
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
+ G L ++ E++++ AR GWIE
Sbjct: 484 VRHAGALDGFELSREDAEALVMQARVAAGWIE 515
>gi|239833211|ref|ZP_04681540.1| transcription termination factor NusA [Ochrobactrum intermedium LMG
3301]
gi|239825478|gb|EEQ97046.1| transcription termination factor NusA [Ochrobactrum intermedium LMG
3301]
Length = 535
Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats.
Identities = 336/512 (65%), Positives = 415/512 (81%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I
Sbjct: 3 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RLLEVVE VE+Y QISL ARDR+P IG ++D LPPMDFGR+A QSAKQVI+QK
Sbjct: 63 LQRLLEVVEHVEDYATQISLFTARDRNPDAQIGDFIADQLPPMDFGRIAAQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR
Sbjct: 123 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+++Y+YDVRREQRGPQ+ LSRTHP FM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV
Sbjct: 183 IRAYVYDVRREQRGPQIFLSRTHPSFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL
Sbjct: 243 VSRDASIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVL 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+
Sbjct: 303 DEDAERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEFAERSTL 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM+A++VDE++ +L +EGFA +EELA V+ EIASI+GFD++TA EIQ RAREYL+ I+
Sbjct: 363 FMEALDVDEMVGQVLASEGFASIEELAYVEPGEIASIDGFDDDTAGEIQERAREYLDRIE 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ +ELGV++EL +PGI + + VA+GE+G+KT+ED AG +VDDL+GW E K G
Sbjct: 423 SEQDNRRKELGVADELRELPGITTAMLVAVGEDGVKTIEDFAGYAVDDLVGWRERKDGET 482
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
G S + E M++ AR K GWI
Sbjct: 483 VAHSGIFSPFDVSRVDAEQMVLTARLKAGWIT 514
>gi|319408013|emb|CBI81667.1| transcription elongation protein [Bartonella schoenbuchensis R1]
Length = 537
Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats.
Identities = 334/523 (63%), Positives = 424/523 (81%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
+SANRLELLQIADAVA EKSIDR++V+S MAD+IQKAARS YG ++IR EIN +TG+I
Sbjct: 3 ISANRLELLQIADAVAREKSIDREIVISAMADAIQKAARSRYGQETNIRAEINSKTGEIK 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RLL+VV+ VE+YT +I+L A I IG DPLPPMDFGR+A QSAKQVI+QK
Sbjct: 63 LQRLLQVVDIVEDYTNEIALSDALKHQVDIKIGDFFCDPLPPMDFGRIAAQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VR+AERD+Q+ EFK+KVGEIISGTVKRVEYGNVIVDLG + +IRRDE I RE+ GDR
Sbjct: 123 VRDAERDQQFEEFKNKVGEIISGTVKRVEYGNVIVDLGRGEAIIRRDELIPRESFHYGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+++++ DV REQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV
Sbjct: 183 IRAFVNDVHREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATF++NAL+PA V+KVVL
Sbjct: 243 VSRDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAATFIVNALQPAEVSKVVL 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW+IDI+TE+E+S NRQK+FNER++
Sbjct: 303 DEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWSIDILTEQEESENRQKEFNERSKL 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM++++VDE++ ++ +EGFA +EE+A V + EIASI+GFD ETA EIQ RAREYLE +
Sbjct: 363 FMESLDVDEMVGQVMASEGFASIEEIAYVDLEEIASIDGFDNETASEIQSRAREYLERKE 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
L +K ++LGV++EL S+PG+ + + VA+GE+GIKT++D AG +VDDL+GW E KGG +
Sbjct: 423 KELDEKRKKLGVADELRSLPGMTNAMLVAIGEDGIKTIDDFAGYAVDDLIGWRERKGGQV 482
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524
+ F G L+ + E+MI+ AR + GWI + E +
Sbjct: 483 QNFSGILTPFDITRTDAEAMILAARVQAGWICQTDCVVENSTE 525
>gi|154254057|ref|YP_001414881.1| NusA antitermination factor [Parvibaculum lavamentivorans DS-1]
gi|154158007|gb|ABS65224.1| NusA antitermination factor [Parvibaculum lavamentivorans DS-1]
Length = 536
Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats.
Identities = 327/519 (63%), Positives = 409/519 (78%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSANRLELLQIADAVA EKSIDR+VV+ MA++IQKAARS YG ++IR INP+TG+I
Sbjct: 3 VSANRLELLQIADAVAREKSIDREVVIEAMAEAIQKAARSRYGAENEIRARINPQTGEIR 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RLLEVV+ VEN QI LK A+ R+P+ +G ++ D LPP+DFGR+A Q+AKQVI+QK
Sbjct: 63 LVRLLEVVDTVENDAVQIDLKSAQRRNPAAQLGDLIEDELPPVDFGRIAAQTAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VR+AER+RQY E+KD++GEI++G VKRVEYGNVIVDLG + ++RRDE + RE R GDR
Sbjct: 123 VRDAERERQYDEYKDRIGEIVNGIVKRVEYGNVIVDLGRGEAIVRRDELLPRETFRNGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++YIYDVRREQRGPQ+ LSR+HPQFM KLF EVPEIY+GI+++KAV+RDPGSRAK+AV
Sbjct: 183 VRAYIYDVRREQRGPQIFLSRSHPQFMAKLFAQEVPEIYDGIIEIKAVARDPGSRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATF++N L PA V KVVL
Sbjct: 243 LSNDSSIDPVGACVGMRGSRVQAVVNELQGEKIDIIQWSPDAATFIVNGLAPAEVVKVVL 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQ +F RT
Sbjct: 303 DEDAQRIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQAEFLSRTAT 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F +A++VDE+IA LL +EGFA +EE+A V + EIA IEGFDE+TA EIQ RA EY+E +
Sbjct: 363 FAEALDVDEMIAQLLASEGFASIEEVAYVDLDEIAEIEGFDEDTAQEIQSRALEYIERQN 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
K RELGV++E+ +PG+ K+ VA GEN +KT+EDLAGC+ DDL+GW+E G
Sbjct: 423 AEFDAKRRELGVADEVADVPGVTPKMMVAFGENDVKTVEDLAGCATDDLIGWNETVNGER 482
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADE 520
+ G + ++ +I+ AR K GWI + +A +
Sbjct: 483 KHQQGIIEGFDLTAEEANDLIMQARLKAGWITEADLASD 521
>gi|170740831|ref|YP_001769486.1| NusA antitermination factor [Methylobacterium sp. 4-46]
gi|168195105|gb|ACA17052.1| NusA antitermination factor [Methylobacterium sp. 4-46]
Length = 544
Score = 539 bits (1390), Expect = e-151, Method: Composition-based stats.
Identities = 327/525 (62%), Positives = 407/525 (77%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+VSANRLELLQIADAVA EK IDR +V+ M ++I KAARS YG +D+ EI+P TG +
Sbjct: 3 VVSANRLELLQIADAVAREKVIDRSIVIGAMEEAIAKAARSRYGAETDVHAEIDPRTGAL 62
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
L R L VVE+VEN +I L+ AR +P+ IG V++D LPP DFGRVA QSAKQVI+Q
Sbjct: 63 RLSRHLLVVEQVENDAREIDLETARRHNPAAQIGDVIADTLPPFDFGRVAAQSAKQVIVQ 122
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
KVR+AERDRQY E+KD++GEI++G VKRVEYGN IVDLG +G++RRDE+I RE RPGD
Sbjct: 123 KVRDAERDRQYEEYKDRIGEIVNGLVKRVEYGNTIVDLGRGEGIVRRDESIPRETFRPGD 182
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
R+++Y++DVRRE RGPQ+ LSR+HPQFM KLF EVPEIY+GIV+VKAV+RDPGSRAK+A
Sbjct: 183 RIRAYLFDVRREVRGPQIFLSRSHPQFMAKLFAQEVPEIYDGIVEVKAVARDPGSRAKIA 242
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATF++NAL+PA V KVV
Sbjct: 243 VISRDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSQDQATFIVNALQPAEVVKVV 302
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
LDE+ RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ERT
Sbjct: 303 LDEEADRIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFVERTN 362
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
FMQA++VDE + LL AEGF VEE+A V+ +IA+I+G DEET EIQ RA+EYL I
Sbjct: 363 TFMQALDVDETVGQLLAAEGFRSVEEIAYVEPGDIANIQGLDEETGAEIQSRAQEYLARI 422
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ + RELGV +EL I GI + + VALGEN ++T+EDLAGC+ DDL+G++E +G
Sbjct: 423 EAENDARRRELGVEDELREIDGITTPMMVALGENEVRTVEDLAGCATDDLVGYTEGRGPE 482
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525
+ G+L + + E+MI+ AR + GWIE + A E + A
Sbjct: 483 AVRHPGYLDGFDLSRAEAEAMIVAARVRAGWIEAPEEAPAEDEQA 527
>gi|319406547|emb|CBI80189.1| transcription elongation protein [Bartonella sp. 1-1C]
Length = 537
Score = 539 bits (1390), Expect = e-151, Method: Composition-based stats.
Identities = 323/523 (61%), Positives = 416/523 (79%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
+SANRLELLQIADAVA EKSIDR++V+S MAD+IQKAARS YG ++IR EIN +TG+I
Sbjct: 3 ISANRLELLQIADAVAREKSIDREIVISAMADAIQKAARSRYGQETNIRAEINSKTGEIK 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RLL+VV+ VE+YT +I+L A R +G +SD LPPMDFGR+A QSAKQVI+QK
Sbjct: 63 LQRLLKVVDVVEDYTTEIALSDALKRKEDAKVGDFLSDLLPPMDFGRIATQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VR+AER+ Q+ EFK+K+GEIISGTVKRVEYGNVIVD+G + ++RRDE I RE+ GDR
Sbjct: 123 VRDAERNHQFEEFKNKIGEIISGTVKRVEYGNVIVDIGRGEAIVRRDELIPRESFHYGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++++++DV RE RGPQV LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV
Sbjct: 183 IRAFVHDVHREPRGPQVFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATFV+NAL+PA V+KVVL
Sbjct: 243 VSRDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAATFVVNALQPAEVSKVVL 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S NR K+F ER++
Sbjct: 303 DEDAERIEVVVPSDQLSLAIGRRGQNVRLASQLTGWNIDILTEQEESENRHKEFTERSKL 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM+ ++VDE++ ++ +EGF +EE+A V + EI SI+GFD +TA EIQ RAREYLE +
Sbjct: 363 FMETLDVDEMVGQVMASEGFTSIEEIAYVNLEEIESIDGFDHDTASEIQNRAREYLEHKE 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
L +K +ELGVS+EL ++P I + + VA+GE+G+KT+ED AG +VDDL+GW E K G
Sbjct: 423 KELNEKRKELGVSDELQTLPSITNAMLVAIGEDGVKTIEDFAGYAVDDLVGWRECKEGQT 482
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524
+ F G L+ + E+M++ AR + GWI + + + +
Sbjct: 483 QNFPGILTPFDITRADAEAMVLAARVQAGWINQADLIKQHPVE 525
>gi|118590498|ref|ZP_01547900.1| transcription elongation factor NusA [Stappia aggregata IAM 12614]
gi|118436961|gb|EAV43600.1| transcription elongation factor NusA [Stappia aggregata IAM 12614]
Length = 551
Score = 539 bits (1390), Expect = e-151, Method: Composition-based stats.
Identities = 328/512 (64%), Positives = 419/512 (81%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
+SANRLELLQIADAVA EKSIDR +V++ M D+IQKAARS YGT +++R EINP+TG+I
Sbjct: 3 ISANRLELLQIADAVAREKSIDRMIVINAMEDAIQKAARSRYGTETEVRAEINPKTGEIR 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RLL+VV+ VEN + ISL+ A+ R+P IG +++PLPP+DFGR+A QSAKQVI+QK
Sbjct: 63 LQRLLQVVDSVENVSTDISLEDAQARNPEASIGDFIAEPLPPLDFGRIAAQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQY EFKD+VGE+++G VKR EYGNVIVDLG +G++RRDE I RE R GDR
Sbjct: 123 VREAERDRQYEEFKDRVGEVVNGVVKRAEYGNVIVDLGRGEGIVRRDELIPREIFRTGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+++ IYDVRREQRGPQ+ LSRTHPQFM KLF EVPEIY+G++++K+V+RDPGSRAK+AV
Sbjct: 183 IRAIIYDVRREQRGPQIFLSRTHPQFMAKLFAQEVPEIYDGVIEIKSVARDPGSRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ ++ATF++NAL+PA V KVVL
Sbjct: 243 ISKDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWNEEAATFIVNALQPAEVAKVVL 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+Q
Sbjct: 303 DEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWAIDIMTEQEESDRRQKEFLERSQL 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM+A+NVDE++ LL EGF VEE+A V++ EI+ IEGFD++TAVEIQ RAR+YL ++
Sbjct: 363 FMEALNVDEMVGQLLATEGFTSVEEVAYVELDEISMIEGFDDDTAVEIQARARDYLAELE 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
L ++ LGV+++L SI G+ + + VALG++GIKTMEDLAGC+ DDL+GW+E K G
Sbjct: 423 AKLDEERVSLGVADDLRSIDGLTTAMLVALGKDGIKTMEDLAGCAADDLVGWTERKDGET 482
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
++F+G LS + + E++++ AR GWI
Sbjct: 483 KRFEGALSEFDMSRAEAENVVMAARLAAGWIT 514
>gi|315122010|ref|YP_004062499.1| transcription elongation factor NusA [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495412|gb|ADR52011.1| transcription elongation factor NusA [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 536
Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats.
Identities = 448/523 (85%), Positives = 489/523 (93%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+VSANRLELLQIADAVA EKSIDRDVVLSVMA+SIQKAARSLYGT+SDIRVEIN ETG+I
Sbjct: 2 VVSANRLELLQIADAVACEKSIDRDVVLSVMAESIQKAARSLYGTLSDIRVEINRETGNI 61
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
S+ R LEVVEEVENY CQISL++ARDRDP+I+IG V+ DPLPP+DFGRVAVQSAKQVIIQ
Sbjct: 62 SICRSLEVVEEVENYACQISLQLARDRDPNINIGDVLFDPLPPIDFGRVAVQSAKQVIIQ 121
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG+SDGVIRRDETISRENLR GD
Sbjct: 122 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGHSDGVIRRDETISRENLRLGD 181
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
RV+SYIYDVRREQRGPQVLLSRTHPQFMVKLF++EVPEIYNGIVQ+KAVSRDPGSRAKLA
Sbjct: 182 RVRSYIYDVRREQRGPQVLLSRTHPQFMVKLFYLEVPEIYNGIVQIKAVSRDPGSRAKLA 241
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
VFSSDSSIDPVGACVGMRGSRVQAVV ELRDEKIDIVVWSPD ATFVIN+LRPAIVTKVV
Sbjct: 242 VFSSDSSIDPVGACVGMRGSRVQAVVGELRDEKIDIVVWSPDPATFVINSLRPAIVTKVV 301
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
LDEDVGRIEV+VPK+QLSLAIGRRGQNVRLASQLTGW IDI+TEEEDS+NRQK FNERTQ
Sbjct: 302 LDEDVGRIEVVVPKDQLSLAIGRRGQNVRLASQLTGWAIDIVTEEEDSVNRQKHFNERTQ 361
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
FFMQAINVDEII HLL AEGF+D+EELACVK+SEIASIEGFDEETA EIQGRAREY+EG+
Sbjct: 362 FFMQAINVDEIIGHLLAAEGFSDIEELACVKLSEIASIEGFDEETASEIQGRAREYMEGL 421
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
++ ++KI+ LGVSEEL SIPG++++I VALGENGIKTMEDLAGCSVDDLLGW E K G
Sbjct: 422 EVARREKIKGLGVSEELFSIPGMNTEIGVALGENGIKTMEDLAGCSVDDLLGWGEVKNGK 481
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523
+E F+GFLS LG K+Q ESMIIHARY +GWI +E +ADE V
Sbjct: 482 VENFEGFLSQLGVLKEQAESMIIHARYHLGWIVREDIADESVD 524
>gi|15887443|ref|NP_353124.1| transcription elongation factor NusA [Agrobacterium tumefaciens
str. C58]
gi|15154956|gb|AAK85909.1| N-utilization substance protein A [Agrobacterium tumefaciens str.
C58]
Length = 538
Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats.
Identities = 349/516 (67%), Positives = 432/516 (83%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YG+ ++IR +IN +TG+I
Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGSETNIRADINSKTGEIR 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RLLEVVE E+Y+ QI L++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK
Sbjct: 63 LQRLLEVVEAAEDYSTQIPLELARDRNPDAKLGDFIADPLPPMDFGRIAAQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQY EFKD++GEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDR
Sbjct: 123 VREAERDRQYDEFKDRIGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENMRYGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+Q+K+V+RDPGSRAK+AV
Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQIKSVARDPGSRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS + A+F++NAL+PA V KVVL
Sbjct: 243 ISNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSQEPASFIVNALQPAEVAKVVL 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DE+ RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+FNERT
Sbjct: 303 DEESERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDIMTEQEESERRQKEFNERTAL 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM+A++VDE++ +L +EGFA VEELA V + EI SI+GFDE+TA EIQ RAREYLE ++
Sbjct: 363 FMEALDVDEMVGQVLASEGFAQVEELAYVDLDEITSIDGFDEDTADEIQTRAREYLERLE 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ K +ELGV++EL I G+ S++ VALGE+GIKT+ED AGC+ DDL+GWSE K G
Sbjct: 423 AEMDAKRKELGVTDELRQIDGLTSQMMVALGEDGIKTIEDFAGCAADDLVGWSERKDGET 482
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517
+KF+G S L + + E+M++ AR GWI E++
Sbjct: 483 KKFEGIFSKLDVSRVEAENMVVQARLLAGWITAEEL 518
>gi|13474627|ref|NP_106196.1| transcription elongation factor NusA [Mesorhizobium loti
MAFF303099]
gi|14025381|dbj|BAB51982.1| N utilization substance protein A [Mesorhizobium loti MAFF303099]
Length = 531
Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats.
Identities = 330/512 (64%), Positives = 416/512 (81%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+VSANRLELLQIADAVA EKSID+ +V++ MAD+IQKAARS YG ++IR +INP TG++
Sbjct: 2 VVSANRLELLQIADAVAREKSIDKSIVIAAMADAIQKAARSRYGQETNIRADINPNTGEM 61
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
L RL+EVVE+V++Y QI++ AR+R+P +G +++ LPPMDFGR+A QSAKQVI+Q
Sbjct: 62 KLQRLMEVVEKVDDYATQIAISSARERNPDAQLGDFIAEQLPPMDFGRIAAQSAKQVIVQ 121
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
KVREAERDRQY E+KD++GEI++GTVKRVEYGNVIVDLG + +IRRDE I REN + GD
Sbjct: 122 KVREAERDRQYDEYKDRIGEIVNGTVKRVEYGNVIVDLGRGEAIIRRDELIPRENYKYGD 181
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
RV++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+A
Sbjct: 182 RVRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIA 241
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSP +A+F++NAL+PA V KVV
Sbjct: 242 VISRDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPSAASFIVNALQPAEVAKVV 301
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
LDED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ER+
Sbjct: 302 LDEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFVERSA 361
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
FM+A++VDE++ +L +EGF VEE+A V EIASI+GFD++TA EIQ RAREYLE I
Sbjct: 362 LFMEALDVDEMVGQVLASEGFTSVEEVAYVDAGEIASIDGFDDDTASEIQTRAREYLEKI 421
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ +K + LGV +EL IPGI + + V LGE+G+KT+ED AG + DDL GW E K G
Sbjct: 422 EAEHDEKRKALGVKDELREIPGITTAMMVTLGEDGVKTIEDFAGYAADDLTGWKERKDGE 481
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512
+ + G L++ G + E M+++AR K GWI
Sbjct: 482 TKVYPGVLANHGVSRADAEQMVLNARLKAGWI 513
>gi|49475029|ref|YP_033070.1| transcription elongation factor NusA [Bartonella henselae str.
Houston-1]
gi|49237834|emb|CAF27029.1| N utilization substance protein A [Bartonella henselae str.
Houston-1]
Length = 528
Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats.
Identities = 325/523 (62%), Positives = 419/523 (80%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
SANRLE+LQIADAVA EKSIDR++V+S MAD+IQKAARS YG ++IR EIN +TG+I
Sbjct: 3 TSANRLEILQIADAVAREKSIDREIVISAMADAIQKAARSRYGQETNIRAEINSKTGEIK 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RLL++V+ +E+YT +I+L A R +G +D LPPMDFGR+A QSAKQVI+QK
Sbjct: 63 LQRLLKIVDIIEDYTSEITLSDALKRQADAKVGDFFADLLPPMDFGRIAAQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VR+AER++QY EFK+K+GEIISGTVKRVEYGNVIVDLG + ++RRDE I RE+ R GDR
Sbjct: 123 VRDAEREQQYEEFKNKIGEIISGTVKRVEYGNVIVDLGRGEAIVRRDELIPRESFRYGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++++++DV RE RGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+++K+V+RDPGSRAK+AV
Sbjct: 183 IRAFVHDVHREPRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATF++NAL+PA V+KVVL
Sbjct: 243 VSRDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAATFIVNALQPAEVSKVVL 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEVIVP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S NRQK+F ER++
Sbjct: 303 DEDAERIEVIVPDDQLSLAIGRRGQNVRLASQLTGWNIDILTEQEESENRQKEFTERSKL 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM++++VDE+I ++ +EGF+ +EE+A + + EIASI+GFD ETA EIQ RA+EYLE +
Sbjct: 363 FMESLDVDEMIGQVMASEGFSSIEEIAYIDLEEIASIDGFDHETAAEIQNRAQEYLERKE 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
L +K ++LGV +EL +PG+ S + VA+GE+G+KTMED AG +VDDL GW E K G
Sbjct: 423 KELDEKRKKLGVCDELRMLPGMTSAMLVAIGEDGVKTMEDFAGYAVDDLAGWRERKEGQT 482
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524
+ F G L+ + E+M++ AR + GWI + + E +
Sbjct: 483 QNFSGILTPFDITRADAEAMVLAARVQAGWINQADLVTENSAE 525
>gi|325291533|ref|YP_004277397.1| transcription elongation factor NusA [Agrobacterium sp. H13-3]
gi|325059386|gb|ADY63077.1| transcription elongation factor NusA [Agrobacterium sp. H13-3]
Length = 538
Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats.
Identities = 353/524 (67%), Positives = 436/524 (83%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YG+ ++IR +IN +TG+I
Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGSETNIRADINSKTGEIR 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RLLEVVE E+Y+ QI L++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK
Sbjct: 63 LQRLLEVVETAEDYSTQIPLELARDRNPDAKLGDFIADPLPPMDFGRIAAQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQY EFKD++GEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDR
Sbjct: 123 VREAERDRQYDEFKDRIGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENMRYGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+Q+K+V+RDPGSRAK+AV
Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQIKSVARDPGSRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS + A+F++NAL+PA V KVVL
Sbjct: 243 ISNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSQEPASFIVNALQPAEVAKVVL 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DE+ RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+FNERT
Sbjct: 303 DEESERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDIMTEQEESERRQKEFNERTAL 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM A++VDE++ +L +EGFA VEELA V + EI+SI+GFD++TA EIQ RAREYLE ++
Sbjct: 363 FMDALDVDEMVGQVLASEGFAQVEELAYVDLGEISSIDGFDDDTADEIQTRAREYLERLE 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ K +ELGV++EL I G+ S++ VALGE+GIKT+ED AGC+ DDL+GWSE K G
Sbjct: 423 AEMDAKRKELGVADELRQIEGLTSQMMVALGEDGIKTIEDFAGCAADDLVGWSERKDGET 482
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525
+KF+G S L + + E+M++ AR GWI E +A EE DA
Sbjct: 483 KKFEGIFSKLDVSRVEAENMVVQARLLAGWITAEDLASEEEVDA 526
>gi|188582066|ref|YP_001925511.1| NusA antitermination factor [Methylobacterium populi BJ001]
gi|179345564|gb|ACB80976.1| NusA antitermination factor [Methylobacterium populi BJ001]
Length = 560
Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats.
Identities = 320/524 (61%), Positives = 405/524 (77%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+VSANRLELLQIADAVA EK IDR +V+ M ++I KAARS YG +D+ EI+P++G +
Sbjct: 3 VVSANRLELLQIADAVAREKVIDRQIVIEAMEEAIAKAARSRYGAETDVHAEIDPKSGAL 62
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
L R L VV++VEN +I+L AR +P +G V+SD LPP DFGRVA QSAKQVI+Q
Sbjct: 63 RLSRHLLVVDQVENDAREITLDQARRYNPGALVGDVISDTLPPFDFGRVAAQSAKQVIVQ 122
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
KVR+AER RQY E+KD++GEI++G VKRVEYGNVIVDLG +G++RRDE I RE RPGD
Sbjct: 123 KVRDAERARQYDEYKDRIGEILNGVVKRVEYGNVIVDLGRGEGIVRRDEMIPRETFRPGD 182
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
R+++Y++DVR E RGPQ+ LSR+HPQFM KLF EVPEIY+GIV+VKAV+RDPGSRAK+A
Sbjct: 183 RIRAYLFDVRSEVRGPQIFLSRSHPQFMAKLFGQEVPEIYDGIVEVKAVARDPGSRAKIA 242
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATF++NAL+PA V KVV
Sbjct: 243 VISRDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSEDQATFIVNALQPAEVVKVV 302
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
LDE+ RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ERTQ
Sbjct: 303 LDEEADRIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFAERTQ 362
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
FM+A++VDE + LL AEGF +VEE+A V ++E+++I+G DEET EIQ RA++YL I
Sbjct: 363 VFMEALDVDETVGQLLAAEGFRNVEEIAFVDVAELSNIQGLDEETGAEIQARAQDYLARI 422
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ + RELGV +EL I G+ + + VALGEN +KT+EDLAGC+ DDL+G++E +G
Sbjct: 423 EQEQDDRRRELGVEDELREIDGVTTAMMVALGENEVKTVEDLAGCATDDLVGYTEGRGPE 482
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524
+ G+L + + E++I+ AR GWIE + E D
Sbjct: 483 AVRHAGYLDGFELSRAEAEALIMAARLHAGWIEALPEPEGEAAD 526
>gi|27375896|ref|NP_767425.1| transcription elongation factor NusA [Bradyrhizobium japonicum USDA
110]
gi|27349034|dbj|BAC46050.1| N-utilization substance protein A [Bradyrhizobium japonicum USDA
110]
Length = 536
Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats.
Identities = 330/529 (62%), Positives = 412/529 (77%), Gaps = 4/529 (0%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSANRLELLQIADAVA EKSIDR +V++ M D+I KAAR+ YG+ +D+ EI+P+ G++
Sbjct: 3 VSANRLELLQIADAVAREKSIDRGIVIAAMEDAIAKAARARYGSETDVHAEIDPKKGELR 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L R + VVE+VEN++ QISL A+ +P +G ++D LPP+++GR+A QSAKQVI+QK
Sbjct: 63 LSRHMLVVEKVENHSNQISLVDAQRANPGAQVGDTIADTLPPLEYGRIAAQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQY EFKD++G+I++G VKRVEYG+VIVDLG + +IRRDE + RE R GDR
Sbjct: 123 VREAERDRQYQEFKDRIGDIVNGVVKRVEYGSVIVDLGRGEAIIRRDEMLPREVFRNGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++YI+DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V
Sbjct: 183 VRAYIFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V+KVV+
Sbjct: 243 ISRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVSKVVI 302
Query: 302 DEDVGRIEVIVPK--EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQ DF T
Sbjct: 303 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFENST 362
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+ FM+++NVDE++ LL +EGF VEELA V I E+A IEGFDEETA E+Q RAREYLE
Sbjct: 363 RVFMESLNVDEVVGQLLASEGFTSVEELAMVDIKELAGIEGFDEETAQELQNRAREYLEQ 422
Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK-G 478
+ L+ K ELGV + L +PG+ SK+ V GEN IKT++DLAGC+ DDL+GW+E K G
Sbjct: 423 QEAELEAKRVELGVEDALKDVPGVTSKMLVKFGENDIKTVDDLAGCATDDLVGWTERKEG 482
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA-DEEVQDAS 526
G K+ G L + +D E+MI+ AR K GWI + +A E +AS
Sbjct: 483 GETTKYPGALDGIEISRDDAEAMIMQARVKAGWITEADLAKPAEEAEAS 531
>gi|39933515|ref|NP_945791.1| transcription elongation factor NusA [Rhodopseudomonas palustris
CGA009]
gi|39647361|emb|CAE25882.1| putative NusA protein, transcriptional termination factor
[Rhodopseudomonas palustris CGA009]
Length = 537
Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats.
Identities = 325/524 (62%), Positives = 410/524 (78%), Gaps = 3/524 (0%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSANRLELLQIADAVA EK+IDR +V++ M D+I KAAR+ YG+ +D+ EI+P+ G++
Sbjct: 3 VSANRLELLQIADAVAREKTIDRSIVIAAMEDAIAKAARARYGSETDVHAEIDPKKGELR 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L R + VVE+VEN QISLK A+ +P IG ++D LPP+++GR+A QSAKQVI+QK
Sbjct: 63 LSRHMLVVEQVENPANQISLKDAQRANPGAQIGDTIADTLPPLEYGRIAAQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQY+EFKD++G+I++G VKRVEYG+VIVDLG + +IRRDE + RE+ R GDR
Sbjct: 123 VREAERDRQYMEFKDRIGDIVNGVVKRVEYGSVIVDLGRGEAIIRRDEMLPRESFRNGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++Y++DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V
Sbjct: 183 VRAYVFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V+KVV+
Sbjct: 243 VSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVSKVVI 302
Query: 302 DEDVGRIEVIVPK--EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQ DF + T
Sbjct: 303 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTESEESERRQADFEKTT 362
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+ FM A+NVDE++ LL +EGF VEELA V E+ASIEGFDEETA E+Q RA EYL+
Sbjct: 363 RAFMDALNVDEVVGQLLASEGFTSVEELALVDPRELASIEGFDEETAAELQTRASEYLDR 422
Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479
I+ L+ + ELGV + L +PG+ SK+ V GEN +KT+EDLAGC+ DDL+GW+E K G
Sbjct: 423 IESELEARRLELGVEDALKDVPGVTSKMLVKFGENDVKTVEDLAGCATDDLVGWTERKDG 482
Query: 480 -NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEV 522
K+ G L + ++ E +I+ AR K GWI++ ++A EE
Sbjct: 483 AEPVKYPGILDGMEMSREDAEHLIMQARVKAGWIDESELASEED 526
>gi|254502609|ref|ZP_05114760.1| NusA N-terminal domain family [Labrenzia alexandrii DFL-11]
gi|222438680|gb|EEE45359.1| NusA N-terminal domain family [Labrenzia alexandrii DFL-11]
Length = 550
Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats.
Identities = 333/519 (64%), Positives = 421/519 (81%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
+SANRLELLQIADAVA EKSIDR +V++ M D+IQKAARS YGT +++R EINP+TGDI
Sbjct: 3 ISANRLELLQIADAVAREKSIDRMIVINAMEDAIQKAARSRYGTETEVRAEINPKTGDIR 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RLL+VVE VEN + +ISL A R+P +G +++PLPP+DFGR+A QSAKQVI+QK
Sbjct: 63 LQRLLQVVETVENVSTEISLDDAAARNPEAGVGDFIAEPLPPLDFGRIAAQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQY EFKD+VGE+I+G VKR EYGNVIVDLG +G++RRDE I RE R GDR
Sbjct: 123 VREAERDRQYDEFKDRVGEVINGVVKRAEYGNVIVDLGRGEGIVRRDELIPREIFRTGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+++ IYDVRREQRGPQ+ LSRTHPQFM KLF EVPEIY+G++++K+V+RDPGSRAK+AV
Sbjct: 183 IRAIIYDVRREQRGPQIFLSRTHPQFMSKLFAQEVPEIYDGVIEIKSVARDPGSRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ ++ATF++NAL+PA V KVVL
Sbjct: 243 ISKDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWNDEAATFIVNALQPAEVAKVVL 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S R K+F ER+Q
Sbjct: 303 DEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWAIDIMTEQEESERRSKEFQERSQL 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM A+NVDE++ LL EGF VEE+A V+I EI+ IEGFD++TAVEIQ RAR++L ++
Sbjct: 363 FMDALNVDEMVGQLLATEGFTSVEEVAYVEIEEISMIEGFDDDTAVEIQARARDFLNELE 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
L ++ ELGV +EL SI G+ S + VALG++ +KTMEDLAGC+ DDL+GW+E K G
Sbjct: 423 AKLDEERIELGVLDELRSIDGLTSAMLVALGKDDVKTMEDLAGCAADDLVGWTERKDGET 482
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADE 520
+++DG LS+ + E+M++ AR GWI +E++A +
Sbjct: 483 KRYDGALSAYDVSRADAENMVMAARLAAGWITEEELAAQ 521
>gi|299133375|ref|ZP_07026570.1| transcription termination factor NusA [Afipia sp. 1NLS2]
gi|298593512|gb|EFI53712.1| transcription termination factor NusA [Afipia sp. 1NLS2]
Length = 535
Score = 538 bits (1386), Expect = e-151, Method: Composition-based stats.
Identities = 327/517 (63%), Positives = 407/517 (78%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSAN+LELLQIADAVA EKSIDR +V++ M D+I KAAR+ YG+ +D+ EI+ + G++
Sbjct: 4 VSANKLELLQIADAVAREKSIDRSIVIAAMEDAIAKAARARYGSETDVHAEIDAKKGELR 63
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L R + VVE VEN QISLK A+ +P+ IG ++D LPP+++GR+A QSAKQVI+QK
Sbjct: 64 LSRHMLVVETVENAANQISLKDAQRANPTAQIGDTIADTLPPLEYGRIAAQSAKQVIVQK 123
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQY EFKD++GEI++G VKRVEYG+VIVDLG + ++RRDE + RE LR GDR
Sbjct: 124 VREAERDRQYQEFKDRIGEIVNGIVKRVEYGSVIVDLGRGEAIVRRDEMLPREALRNGDR 183
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+++YI+DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V
Sbjct: 184 IRAYIFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 243
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V KVV+
Sbjct: 244 ISRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVAKVVI 303
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQ DF T+
Sbjct: 304 DEDRERIEVVVPDTQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFENSTRV 363
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM+A+NVDE++ LL +EGF+ VEELA V + E+A IEGFDEETA E+Q RAREYLE +D
Sbjct: 364 FMEALNVDEVVGQLLASEGFSSVEELALVDVRELAGIEGFDEETANELQSRAREYLEQLD 423
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
L+ K +ELGV + L IPG+ K+ V GEN +KT+EDLAGC+ DDL+GW E K G
Sbjct: 424 AELEAKRKELGVDDALKDIPGVTGKMLVKFGENDVKTVEDLAGCATDDLVGWVERKDGET 483
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518
K GFL + T +D+ E++I+ AR GWI + +A
Sbjct: 484 VKHAGFLDASETSRDEAEAIIMQARLAAGWITEADLA 520
>gi|192288873|ref|YP_001989478.1| transcription elongation factor NusA [Rhodopseudomonas palustris
TIE-1]
gi|192282622|gb|ACE99002.1| NusA antitermination factor [Rhodopseudomonas palustris TIE-1]
Length = 537
Score = 538 bits (1385), Expect = e-150, Method: Composition-based stats.
Identities = 325/524 (62%), Positives = 410/524 (78%), Gaps = 3/524 (0%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSANRLELLQIADAVA EK+IDR +V++ M D+I KAAR+ YG+ +D+ EI+P+ G++
Sbjct: 3 VSANRLELLQIADAVAREKTIDRSIVIAAMEDAIAKAARARYGSETDVHAEIDPKKGELR 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L R + VVE+VEN QISLK A+ +P IG ++D LPP+++GR+A QSAKQVI+QK
Sbjct: 63 LSRHMLVVEQVENPANQISLKDAQRANPGAQIGDTIADTLPPLEYGRIAAQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQY+EFKD++G+I++G VKRVEYG+VIVDLG + +IRRDE + RE+ R GDR
Sbjct: 123 VREAERDRQYMEFKDRIGDIVNGVVKRVEYGSVIVDLGRGEAIIRRDEMLPRESFRNGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++Y++DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V
Sbjct: 183 VRAYVFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V+KVV+
Sbjct: 243 VSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVSKVVI 302
Query: 302 DEDVGRIEVIVPK--EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQ DF + T
Sbjct: 303 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTESEESERRQADFEKTT 362
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+ FM A+NVDE++ LL +EGF VEELA V E+ASIEGFDEETA E+Q RA EYL+
Sbjct: 363 RAFMDALNVDEVVGQLLASEGFTSVEELALVDPRELASIEGFDEETAAELQTRASEYLDR 422
Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479
I+ L+ + ELGV + L +PG+ SK+ V GEN +KT+EDLAGC+ DDL+GW+E K G
Sbjct: 423 IESELEARRLELGVEDALKDVPGVTSKMLVKFGENDVKTVEDLAGCATDDLVGWTERKDG 482
Query: 480 -NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEV 522
K+ G L + ++ E +I+ AR K GWI++ ++A EE
Sbjct: 483 AEPVKYPGILDGMEMSREDAEHLIMQARVKAGWIDESELASEEE 526
>gi|148251679|ref|YP_001236264.1| transcription elongation factor NusA [Bradyrhizobium sp. BTAi1]
gi|146403852|gb|ABQ32358.1| NusA antitermination factor [Bradyrhizobium sp. BTAi1]
Length = 537
Score = 538 bits (1385), Expect = e-150, Method: Composition-based stats.
Identities = 324/527 (61%), Positives = 408/527 (77%), Gaps = 3/527 (0%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSANRLELLQIADAVA EKSIDR +V++ M D+I KAAR+ YG+ +D+ EI+P G++
Sbjct: 3 VSANRLELLQIADAVAREKSIDRGIVIAAMEDAIAKAARARYGSETDVHAEIDPRRGELR 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L R + VVE+VEN + QISL AR +P IG ++D LPP+++GR+A QSAKQVI+QK
Sbjct: 63 LSRHMLVVEKVENPSNQISLDDARRANPGAQIGDTIADTLPPLEYGRIAAQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQY EFKD++G+I++G VKRVEYG+VI+DLG + +IRRDE + RE R GDR
Sbjct: 123 VREAERDRQYQEFKDRIGDIVNGVVKRVEYGSVILDLGRGEAIIRRDEMLPREVFRNGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++Y++DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V
Sbjct: 183 VRAYVFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V KVV+
Sbjct: 243 VSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVAKVVI 302
Query: 302 DEDVGRIEVIVPK--EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQ DF T
Sbjct: 303 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFENST 362
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+ FM+++NVDE++ LL +EGF VEELA V + ++A IEGFDEETA E+Q RARE+LE
Sbjct: 363 RVFMESLNVDEVVGQLLASEGFTSVEELALVDLKDLAGIEGFDEETATELQTRAREFLEQ 422
Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG- 478
+ L+ K +ELGV + + ++PG+ SK+ V GEN IKT++DLAGC+ DDL+GW+E K
Sbjct: 423 QEAELEAKRKELGVEDAVKTVPGVTSKMLVKFGENDIKTVDDLAGCATDDLVGWTERKDS 482
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525
G K G L L +D E+M++ AR K GWI + +A E +D
Sbjct: 483 GEQTKHAGILDGLEVSRDDAEAMVMQARVKAGWISEADIAKPEAEDE 529
>gi|296448218|ref|ZP_06890114.1| transcription termination factor NusA [Methylosinus trichosporium
OB3b]
gi|296254258|gb|EFH01389.1| transcription termination factor NusA [Methylosinus trichosporium
OB3b]
Length = 555
Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats.
Identities = 329/524 (62%), Positives = 418/524 (79%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSANRLE+LQIADAVA EKSIDR +V++ M D++QKAARS YG +++R EINP++G++
Sbjct: 3 VSANRLEILQIADAVAREKSIDRQIVIASMEDALQKAARSRYGQETEVRAEINPKSGEVR 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
RLL VV+ V+N QIS++ AR R+P+ +G +S+ LPP DFGR+A QSAKQ+I+QK
Sbjct: 63 FSRLLLVVDLVDNDATQISIEDARKRNPAAQVGDWISETLPPFDFGRIAAQSAKQIIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQY EFKD++GEI++G VKRVEYGNVI+DLG + +IRRDE I RE RPGDR
Sbjct: 123 VREAERDRQYEEFKDRIGEIVNGVVKRVEYGNVIIDLGRGEAIIRRDEMIPRETFRPGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++Y+YDVRREQRGPQ+ LSRTHPQFM KLF EVPEIY+ +++VK+V+RDPGSRAK+AV
Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMAKLFRQEVPEIYDNVIEVKSVARDPGSRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S DSSIDPVGACVGMRGSRVQAVV EL+ E+IDI+ WS D+ATF++NAL+PA V KVVL
Sbjct: 243 ISRDSSIDPVGACVGMRGSRVQAVVGELQGERIDIIPWSADAATFIVNALQPAEVVKVVL 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQ++F ERT+
Sbjct: 303 DEDTARIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQREFIERTKV 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM AI+VDE++ LL +EGF VE+LA V ++E+A+IEGFDE+TA EIQ RAR YLE ++
Sbjct: 363 FMNAIDVDEVVGRLLASEGFTSVEDLAFVDLAELATIEGFDEDTAAEIQNRARNYLERVE 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ + +ELGV +EL I GI + I V LGEN +K++EDLAGC DDL+GW+E K G
Sbjct: 423 AENEARRKELGVLDELKEIDGITTAIMVKLGENDVKSIEDLAGCVPDDLVGWTEKKNGET 482
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525
K GFL + +++ E+MI+ AR + GWIE A+E ++A
Sbjct: 483 IKQTGFLDGVDISREEAEAMIMAARVRAGWIEAPAPAEESGEEA 526
>gi|240849883|ref|YP_002971271.1| transcription elongation factor NusA [Bartonella grahamii as4aup]
gi|240267006|gb|ACS50594.1| transcription elongation factor NusA [Bartonella grahamii as4aup]
Length = 543
Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats.
Identities = 326/523 (62%), Positives = 419/523 (80%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
SANRLE+LQIADAVA EKSIDR++V+S MAD+IQKAARS YG ++IR EIN +TG+I
Sbjct: 3 TSANRLEILQIADAVAREKSIDREIVISAMADAIQKAARSRYGQETNIRAEINSKTGEIK 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RLL++V+ VE+YT +I+L A IG +D LPPMDFGR+A QSAKQVI+QK
Sbjct: 63 LQRLLKIVDVVEDYTTEITLSDALKHQAEAKIGDFFADLLPPMDFGRIAAQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VR+AER++QY EFK+KVGEIISGTVKRVEYGNVIVDLG + ++RRDE I RE+ R GDR
Sbjct: 123 VRDAEREQQYEEFKNKVGEIISGTVKRVEYGNVIVDLGRGEAIVRRDELIPRESFRYGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+++++ DV RE RGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+++K+V+RDPGSRAK+AV
Sbjct: 183 IRAFVNDVHRETRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATFV+NAL+PA V+K++L
Sbjct: 243 VSRDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAATFVVNALQPAEVSKIIL 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEVIVP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S NRQK+F ER++
Sbjct: 303 DEDAERIEVIVPDDQLSLAIGRRGQNVRLASQLTGWNIDILTEKEESENRQKEFTERSKL 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM+A+ VDE+I ++ +EGF+ +EE+A + + EIASI+GFD +TA EIQ RAREYL+ +
Sbjct: 363 FMEALEVDEMIGQVMASEGFSSIEEIAYIDLEEIASIDGFDHDTAAEIQSRAREYLDHQE 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
L +K ++LGVS+EL ++PG+ S + VA+GE+G+KT+ED AG +VDDL GW E K G
Sbjct: 423 KELDEKRKKLGVSDELRTLPGMTSAMLVAVGEDGVKTIEDFAGYAVDDLAGWRERKEGQT 482
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524
+ F G L+ + E+M++ AR + GWI++ + E +
Sbjct: 483 QNFSGILTPFDITRADAEAMVLAARVQAGWIDQVDLVTENPVE 525
>gi|218530876|ref|YP_002421692.1| NusA antitermination factor [Methylobacterium chloromethanicum CM4]
gi|254561862|ref|YP_003068957.1| transcription termination/antitermination L factor
[Methylobacterium extorquens DM4]
gi|218523179|gb|ACK83764.1| NusA antitermination factor [Methylobacterium chloromethanicum CM4]
gi|254269140|emb|CAX25104.1| transcription termination/antitermination L factor
[Methylobacterium extorquens DM4]
Length = 545
Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats.
Identities = 319/524 (60%), Positives = 405/524 (77%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+VSANRLELLQIA+AVA EK IDR +V+ M ++I KAARS YG +D+ EI+ ++G +
Sbjct: 3 VVSANRLELLQIAEAVAREKVIDRQIVIEAMEEAIAKAARSRYGAETDVHAEIDTKSGAL 62
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
L R L VV++VEN +I+L AR +P IG V+SD LPP DFGRVA QSAKQVI+Q
Sbjct: 63 RLSRHLLVVDQVENDAREITLDQARRYNPGALIGDVISDTLPPFDFGRVAAQSAKQVIVQ 122
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
KVR+AER RQY E+KD++GEI++G VKRVEYGNVIVDLG +G++RRDE I RE RPGD
Sbjct: 123 KVRDAERARQYDEYKDRIGEILNGVVKRVEYGNVIVDLGRGEGIVRRDEMIPRETFRPGD 182
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
R+++Y++DVR E RGPQ+ LSR+HPQFM KLF EVPEIY+GIV+VKAV+RDPGSRAK+A
Sbjct: 183 RIRAYLFDVRSEVRGPQIFLSRSHPQFMAKLFGQEVPEIYDGIVEVKAVARDPGSRAKIA 242
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATF++NAL+PA V KVV
Sbjct: 243 VISRDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSEDQATFIVNALQPAEVVKVV 302
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
LDE+ RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ERTQ
Sbjct: 303 LDEEADRIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFAERTQ 362
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
FM+A++VDE + LL AEGF +VEE+A V ++E+++I+G DEET EIQ RA++YL I
Sbjct: 363 AFMEALDVDETVGQLLAAEGFRNVEEIAFVDVAELSNIQGLDEETGAEIQARAQDYLARI 422
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ + RELGV +EL I GI + + VALGEN +KT+EDLAGC+ DDL+G++E +G
Sbjct: 423 EQEQDDRRRELGVEDELREIDGITTAMMVALGENEVKTVEDLAGCATDDLVGYTEGRGPE 482
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524
+ G+L + + E++I+ AR K GWI+ + E +
Sbjct: 483 AVRHAGYLDGFELSRAEAEALIMAARLKAGWIDALPEPEGEAAE 526
>gi|90422002|ref|YP_530372.1| transcription elongation factor NusA [Rhodopseudomonas palustris
BisB18]
gi|90104016|gb|ABD86053.1| NusA antitermination factor [Rhodopseudomonas palustris BisB18]
Length = 541
Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats.
Identities = 325/519 (62%), Positives = 407/519 (78%), Gaps = 3/519 (0%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSAN+LELLQIADAVA EKSIDR +V++ M D+I KAAR+ YG+ +D+ EI+ + G++
Sbjct: 4 VSANKLELLQIADAVAREKSIDRSIVIAAMEDAIAKAARARYGSETDVHAEIDAKKGELR 63
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L R + VVEEVEN + QISLK A+ +P IG ++D LPP+++GR+A QSAKQVI+QK
Sbjct: 64 LSRHMLVVEEVENSSNQISLKDAQRANPGAQIGDTIADTLPPLEYGRIAAQSAKQVIVQK 123
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQY EFKD++G+I++G VKRVEYG+VIVDLG + ++RRDE + RE R GDR
Sbjct: 124 VREAERDRQYQEFKDRIGDIVNGVVKRVEYGSVIVDLGRGEAIVRRDEMLPREVFRNGDR 183
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++YI+DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V
Sbjct: 184 VRAYIFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 243
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V+KVV+
Sbjct: 244 ISRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVSKVVI 303
Query: 302 DEDVGRIEVIVPK--EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQ DF T
Sbjct: 304 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTETEESERRQADFENST 363
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+ FM+++NVDE++ LL +EGF VEELA V + E+ASIEGFD+ETA E+Q RAREYLE
Sbjct: 364 RVFMESLNVDEVVGQLLASEGFTSVEELAMVDVRELASIEGFDDETANELQSRAREYLEQ 423
Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK-G 478
++ L+ K +ELGV + L ++PG+ SK+ V GEN IKT+EDLAGC+ DDL+GWSE K G
Sbjct: 424 LESELEAKRKELGVEDALKTVPGVTSKMLVKFGENDIKTVEDLAGCATDDLVGWSERKEG 483
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517
G KF G L + + E++I+ AR GWI + +
Sbjct: 484 GEPVKFPGILDANEISRADAETLIMQARVIAGWITEADL 522
>gi|163852118|ref|YP_001640161.1| transcription termination factor NusA [Methylobacterium extorquens
PA1]
gi|163663723|gb|ABY31090.1| transcription termination factor NusA [Methylobacterium extorquens
PA1]
Length = 545
Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats.
Identities = 319/524 (60%), Positives = 405/524 (77%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+VSANRLELLQIA+AVA EK IDR +V+ M ++I KAARS YG +D+ EI+ ++G +
Sbjct: 3 VVSANRLELLQIAEAVAREKVIDRQIVIEAMEEAIAKAARSRYGAETDVHAEIDTKSGAL 62
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
L R L VV++VEN +I+L AR +P IG V+SD LPP DFGRVA QSAKQVI+Q
Sbjct: 63 RLSRHLLVVDQVENDAREITLDQARRYNPGALIGDVISDTLPPFDFGRVAAQSAKQVIVQ 122
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
KVR+AER RQY E+KD++GEI++G VKRVEYGNVIVDLG +G++RRDE I RE RPGD
Sbjct: 123 KVRDAERARQYDEYKDRIGEILNGVVKRVEYGNVIVDLGRGEGIVRRDEMIPRETFRPGD 182
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
R+++Y++DVR E RGPQ+ LSR+HPQFM KLF EVPEIY+GIV+VKAV+RDPGSRAK+A
Sbjct: 183 RIRAYLFDVRSEVRGPQIFLSRSHPQFMAKLFGQEVPEIYDGIVEVKAVARDPGSRAKIA 242
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATF++NAL+PA V KVV
Sbjct: 243 VISRDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSEDQATFIVNALQPAEVVKVV 302
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
LDE+ RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ERTQ
Sbjct: 303 LDEEADRIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFAERTQ 362
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
FM+A++VDE + LL AEGF +VEE+A V ++E+++I+G DEET EIQ RA++YL I
Sbjct: 363 AFMEALDVDETVGQLLAAEGFRNVEEIAFVDVAELSNIQGLDEETGAEIQARAQDYLARI 422
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ + RELGV +EL I GI + + VALGEN +KT+EDLAGC+ DDL+G++E +G
Sbjct: 423 EQEQDDRRRELGVEDELREIDGITTAMMVALGENEVKTVEDLAGCATDDLVGYTEGRGPE 482
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524
+ G+L + + E++I+ AR K GWI+ + E +
Sbjct: 483 AVRHAGYLDGFELSRAEAEALIMAARLKAGWIDALPEPEGEAAE 526
>gi|240139447|ref|YP_002963922.1| transcription termination/antitermination L factor
[Methylobacterium extorquens AM1]
gi|240009419|gb|ACS40645.1| transcription termination/antitermination L factor
[Methylobacterium extorquens AM1]
Length = 545
Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats.
Identities = 319/524 (60%), Positives = 405/524 (77%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+VSANRLELLQIA+AVA EK IDR +V+ M ++I KAARS YG +D+ EI+ ++G +
Sbjct: 3 VVSANRLELLQIAEAVAREKVIDRQIVIEAMEEAIAKAARSRYGAETDVHAEIDTKSGAL 62
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
L R L VV++VEN +I+L AR +P IG V+SD LPP DFGRVA QSAKQVI+Q
Sbjct: 63 RLSRHLLVVDQVENDAREITLDQARRYNPGALIGDVISDTLPPFDFGRVAAQSAKQVIVQ 122
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
KVR+AER RQY E+KD++GEI++G VKRVEYGNVIVDLG +G++RRDE I RE RPGD
Sbjct: 123 KVRDAERARQYDEYKDRIGEILNGVVKRVEYGNVIVDLGRGEGIVRRDEMIPRETFRPGD 182
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
R+++Y++DVR E RGPQ+ LSR+HPQFM KLF EVPEIY+GIV+VKAV+RDPGSRAK+A
Sbjct: 183 RIRAYLFDVRSEVRGPQIFLSRSHPQFMAKLFGQEVPEIYDGIVEVKAVARDPGSRAKIA 242
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATF++NAL+PA V KVV
Sbjct: 243 VISRDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSEDQATFIVNALQPAEVVKVV 302
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
LDE+ RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ERTQ
Sbjct: 303 LDEEADRIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFAERTQ 362
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
FM+A++VDE + LL AEGF +VEE+A V ++E+++I+G DEET EIQ RA++YL I
Sbjct: 363 AFMEALDVDETVGQLLAAEGFRNVEEIAFVDVAELSNIQGLDEETGAEIQARAQDYLARI 422
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ + RELGV +EL I GI + + VALGEN +KT+EDLAGC+ DDL+G++E +G
Sbjct: 423 EQEQDDRRRELGVEDELREIDGITTAMMVALGENEVKTVEDLAGCATDDLVGYTEGRGPE 482
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524
+ G+L + + E++I+ AR K GWI+ + E +
Sbjct: 483 AVRHAGYLDGFELSRAEAEALIMAARLKAGWIDALPEPEGEASE 526
>gi|85714177|ref|ZP_01045166.1| transcription elongation factor NusA [Nitrobacter sp. Nb-311A]
gi|85699303|gb|EAQ37171.1| transcription elongation factor NusA [Nitrobacter sp. Nb-311A]
Length = 535
Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats.
Identities = 321/527 (60%), Positives = 408/527 (77%), Gaps = 2/527 (0%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSAN+LELLQIADAVA EKSIDR +V++ M D+I KAAR+ YG+ +D+ EI+P+TG +
Sbjct: 4 VSANKLELLQIADAVAREKSIDRSIVIAAMEDAIAKAARARYGSETDVHAEIHPKTGQLQ 63
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L R + VV++VEN QISLK A+ +P +G ++D LPP+++GR++ QSAKQVI+QK
Sbjct: 64 LTRHMLVVDQVENAANQISLKDAQRANPGAQVGDTIADTLPPLEYGRISAQSAKQVIVQK 123
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQY EFKD++G+I++G VKRVEYG+VIVDLG + VIRRDE + RE R GDR
Sbjct: 124 VREAERDRQYQEFKDRIGDIVNGIVKRVEYGSVIVDLGRGEAVIRRDEMLPREVFRNGDR 183
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++YI+DVRRE RGPQ+ LSRTHPQFMVKLF EVPEIY+GIV++KAV+RDPGSRAK+ V
Sbjct: 184 VRAYIFDVRRETRGPQIFLSRTHPQFMVKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 243
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V KVV+
Sbjct: 244 VSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVAKVVI 303
Query: 302 DEDVGRIEVIVPK--EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQ DF T
Sbjct: 304 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFENAT 363
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+ FM+A+NVDE++ LL +EGF VEEL V EIA IEGFD+ETA E+Q RAREYLE
Sbjct: 364 RMFMEALNVDEVVGQLLASEGFTSVEELTLVDAREIAGIEGFDDETANELQNRAREYLEQ 423
Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479
++ L+ + +ELGV + + ++PG+ SK+ V LGEN ++T+EDLAGC+ DDL+GW+E K G
Sbjct: 424 LEAELENRRKELGVDDAMKTVPGVTSKMLVKLGENDVRTVEDLAGCATDDLIGWTERKEG 483
Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDAS 526
K G+ + ++ E++I+ AR GWI + +A A+
Sbjct: 484 EAVKHAGYFDGIEISREDAEAIIMQARLIAGWITEADLAKPAEAVAT 530
>gi|115522227|ref|YP_779138.1| transcription elongation factor NusA [Rhodopseudomonas palustris
BisA53]
gi|115516174|gb|ABJ04158.1| NusA antitermination factor [Rhodopseudomonas palustris BisA53]
Length = 538
Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats.
Identities = 331/529 (62%), Positives = 412/529 (77%), Gaps = 5/529 (0%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSANRLELLQIADAVA EK+IDR +V++ M D+I KAAR+ YG+ +D+ EI+P+TG +
Sbjct: 4 VSANRLELLQIADAVAREKTIDRGIVIAAMEDAIAKAARARYGSETDVHAEIHPKTGQLQ 63
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L R + VVE+VEN QISL A+ +P IG ++D LPP+++GR+A QSAKQVI+QK
Sbjct: 64 LTRHMLVVEQVENSANQISLVDAQRANPGAMIGDTIADTLPPLEYGRIAAQSAKQVIVQK 123
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQY EFKD++G+I++G VKRVEYG+VIVDLG + +IRRDE + RE R GDR
Sbjct: 124 VREAERDRQYQEFKDRIGDIVNGVVKRVEYGSVIVDLGRGEAIIRRDEMLPREVFRNGDR 183
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++YI+DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V
Sbjct: 184 VRAYIFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 243
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V+KVV+
Sbjct: 244 VSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVSKVVI 303
Query: 302 DEDVGRIEVIVPK--EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQ DF T
Sbjct: 304 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTESEESERRQADFENST 363
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+ FM+++NVDE++ LL +EGF VEELA V E+ASIEGFD+ETA E+Q RAREYLE
Sbjct: 364 RVFMESLNVDEVVGQLLASEGFTSVEELALVDARELASIEGFDDETAGELQSRAREYLEQ 423
Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479
++ L+ K +ELGV +EL ++PG+ SK+ V GEN IKT+EDLAGC+ DDL+GWSE K G
Sbjct: 424 LESELEAKRKELGVEDELKTVPGVTSKMLVKFGENDIKTVEDLAGCATDDLVGWSERKEG 483
Query: 480 --NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADE-EVQDA 525
KF G L + + E++I+ AR K GWI + ++A E +DA
Sbjct: 484 VAEPVKFPGILDANEISRADAEALIMQARVKAGWITEAELAQTVEGEDA 532
>gi|92115662|ref|YP_575391.1| transcription elongation factor NusA [Nitrobacter hamburgensis X14]
gi|91798556|gb|ABE60931.1| NusA antitermination factor [Nitrobacter hamburgensis X14]
Length = 536
Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats.
Identities = 322/524 (61%), Positives = 408/524 (77%), Gaps = 2/524 (0%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSAN+LELLQIADAVA EKSIDR +V++ M D+I KAAR+ YG+ +D+ EI+P+TG +
Sbjct: 4 VSANKLELLQIADAVAREKSIDRGIVIAAMEDAIAKAARARYGSETDVHAEIHPKTGQLQ 63
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L R + VV+E+EN QISLK A+ +P IG ++D LPP+++GR+A QSAKQVI+QK
Sbjct: 64 LTRHMLVVDEIENAANQISLKDAQRANPGAQIGDTIADTLPPLEYGRIAAQSAKQVIVQK 123
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQY EFKD++G+I++G VKRVEYG+VIVDLG + V+RRDE + RE R GDR
Sbjct: 124 VREAERDRQYQEFKDRIGDIVNGIVKRVEYGSVIVDLGRGEAVVRRDEMLPREVFRNGDR 183
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++YI+DVRRE RGPQ+ LSRTHPQFMVKLF EVPEIY+GIV++KAV+RDPGSRAK+ V
Sbjct: 184 VRAYIFDVRRETRGPQIFLSRTHPQFMVKLFTQEVPEIYDGIVEIKAVARDPGSRAKIGV 243
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V KVV+
Sbjct: 244 ISRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVAKVVI 303
Query: 302 DEDVGRIEVIVPK--EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQ DF T
Sbjct: 304 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFENAT 363
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+ FM+A+NVDE++ LL +EGF VEEL V+ E+A IEGFD+ETA E+Q RAREYLE
Sbjct: 364 RMFMEALNVDEVVGQLLASEGFMSVEELTLVETRELAGIEGFDDETANELQSRAREYLEQ 423
Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479
++ L + +ELGV + L ++PG+ SK+ V LGEN ++T+EDLAGC+ DDL+GW+E K G
Sbjct: 424 LEAELDNRRKELGVDDALKTVPGVTSKMLVKLGENEVRTVEDLAGCATDDLVGWTERKDG 483
Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523
K G+L + ++ E++I+ AR GWI + +A +
Sbjct: 484 EAVKHAGYLDGIEVSREDAEAIIMQARLIAGWITEADLAKSAEE 527
>gi|163867513|ref|YP_001608712.1| transcription elongation factor NusA [Bartonella tribocorum CIP
105476]
gi|161017159|emb|CAK00717.1| transcription elongation protein [Bartonella tribocorum CIP 105476]
Length = 543
Score = 533 bits (1372), Expect = e-149, Method: Composition-based stats.
Identities = 328/523 (62%), Positives = 418/523 (79%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
SANRLE+LQIADAVA EKSIDR++V+S MAD+IQKAARS YG ++IR EIN +TG+I
Sbjct: 3 TSANRLEILQIADAVAREKSIDREIVISAMADAIQKAARSRYGQETNIRAEINSKTGEIK 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RLL++V+ VE+YT +I+L A IG +D LPPMDFGR+A QSAKQVI+QK
Sbjct: 63 LQRLLKIVDVVEDYTTEIALSDALKCQEEAKIGDFFADLLPPMDFGRIAAQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VR+AERD+QY EFK+KVGEIISGTVKRVEYGNVIVDLG + ++RRDE I RE+ R GDR
Sbjct: 123 VRDAERDQQYEEFKNKVGEIISGTVKRVEYGNVIVDLGRGEAIVRRDELIPRESFRYGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+++++ DV RE RGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+++K+V+RDPGSRAK+AV
Sbjct: 183 IRAFVNDVHRETRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATFV+NAL+PA V+K++L
Sbjct: 243 VSRDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAATFVVNALQPAEVSKIIL 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEVIVP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S NRQK+F ER++
Sbjct: 303 DEDAERIEVIVPDDQLSLAIGRRGQNVRLASQLTGWNIDILTEKEESENRQKEFTERSKL 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM+A+ VDE+I ++ +EGF+ +EE+A + + EIASI+GFD +TA EIQ RAREYLE +
Sbjct: 363 FMEALEVDEMIGQVMASEGFSSIEEIAYIDLEEIASIDGFDHDTASEIQSRAREYLEHQE 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
L K ++LGVS+EL ++PG+ S + VA+GE+G+KT+ED AG +VDDL GW E K G
Sbjct: 423 KELDDKRKKLGVSDELRTLPGMTSAMLVAVGEDGVKTIEDFAGYAVDDLTGWRERKEGQT 482
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524
+ F G L+ + E+M++ AR + GWI++ + E +
Sbjct: 483 KSFSGVLTPFDITRADAEAMVLAARVQAGWIDQADLVAENPVE 525
>gi|75674221|ref|YP_316642.1| transcription elongation factor NusA [Nitrobacter winogradskyi
Nb-255]
gi|74419091|gb|ABA03290.1| NusA antitermination factor [Nitrobacter winogradskyi Nb-255]
Length = 538
Score = 531 bits (1367), Expect = e-148, Method: Composition-based stats.
Identities = 321/525 (61%), Positives = 407/525 (77%), Gaps = 2/525 (0%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSAN+LELLQIADAVA EK+IDR +V++ M D+I KAAR+ YG+ +D+ EI+P+TG +
Sbjct: 4 VSANKLELLQIADAVAREKTIDRGIVIAAMEDAIAKAARARYGSETDVHAEIHPKTGQLQ 63
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L R + VVE+VEN QISLK A+ +P IG ++D LPP+++GR++ QSAKQVI+QK
Sbjct: 64 LTRHMLVVEQVENAANQISLKDAQRANPGAQIGDTIADTLPPLEYGRISAQSAKQVIVQK 123
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQY EFKD++G+I++G VKRVEYG+VIVDLG + VIRRDE + RE R GDR
Sbjct: 124 VREAERDRQYQEFKDRIGDIVNGIVKRVEYGSVIVDLGRGEAVIRRDEMLPREVFRNGDR 183
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++YI+DVRRE RGPQ+ LSRTHPQFMVKLF EVPEIY+GIV++KAV+RDPGSRAK+ V
Sbjct: 184 VRAYIFDVRRETRGPQIFLSRTHPQFMVKLFTQEVPEIYDGIVEIKAVARDPGSRAKIGV 243
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V KVV+
Sbjct: 244 VSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVAKVVI 303
Query: 302 DEDVGRIEVIVPK--EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQ DF T
Sbjct: 304 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFENAT 363
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+ FM+ +NVDE++ LL +EGF VEEL V EIA IEGFD+ETA E+Q RAREYLE
Sbjct: 364 RMFMETLNVDEVVGQLLASEGFTSVEELTLVDTREIAGIEGFDDETATELQNRAREYLEQ 423
Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479
++ L+ + +ELGV + L ++PG+ SK+ V LGEN ++T+EDLAGC+ DDL+GW+E K G
Sbjct: 424 LEAELENRRKELGVDDALKTVPGVTSKMLVKLGENEVRTIEDLAGCATDDLVGWTERKEG 483
Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524
K G+ + ++ E++I+ AR +GWI + +A +
Sbjct: 484 EAVKHAGYFDGIEISREDAEAIIMQARLSVGWINEADLAKPAEAE 528
>gi|254471028|ref|ZP_05084431.1| N-utilization substance protein A [Pseudovibrio sp. JE062]
gi|211960170|gb|EEA95367.1| N-utilization substance protein A [Pseudovibrio sp. JE062]
Length = 572
Score = 530 bits (1366), Expect = e-148, Method: Composition-based stats.
Identities = 327/515 (63%), Positives = 411/515 (79%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
+SANRLELLQIADAVA EKSIDR +V++ + D+IQKAARS YGT +++R EINP+TG+I
Sbjct: 3 ISANRLELLQIADAVAREKSIDRSIVIAALEDAIQKAARSRYGTETEVRAEINPKTGEIR 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RLL+VVE VEN + +I+L A++R+P IG ++DPLPP+DFGR+A QSAKQVI+QK
Sbjct: 63 LQRLLQVVEVVENISTEIALVDAQERNPDATIGDFMADPLPPLDFGRIAAQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERD+QY EFKD++GE+++ VKRVEYGNV+VD G + ++RRDE I RE R GDR
Sbjct: 123 VREAERDQQYDEFKDRIGEVLNAVVKRVEYGNVVVDTGKGEAIVRRDELIPREIFRNGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+++ I+DVRREQRGPQV LSRTHPQFM KLF EVPEIY+G++++KAV+RDPGSRAK+AV
Sbjct: 183 IRALIFDVRREQRGPQVFLSRTHPQFMAKLFAQEVPEIYDGVIEIKAVARDPGSRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D+ATF++NAL+PA V KVVL
Sbjct: 243 LSNDGSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWNDDAATFIVNALQPAEVAKVVL 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F R+
Sbjct: 303 DEDSERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWGIDIMTEAEESERRQKEFQIRSDL 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F +NVDE+++ LL +EGF VEE+A V I EI+SIEGFDEETA EIQ RAREYLE +
Sbjct: 363 FQNTLNVDEMVSQLLASEGFTSVEEVAYVDIDEISSIEGFDEETADEIQARAREYLEEQE 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
L ++ R+LGVSEEL +PG+ S + VALG++ IKTMEDLAGC+ DDL+GW+E K
Sbjct: 423 AKLAEERRQLGVSEELVQVPGLTSAMLVALGKDEIKTMEDLAGCAADDLVGWTERKDKET 482
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
+ +G LS + E++++ AR GWI E
Sbjct: 483 IRVEGTLSGFDLSRADAEAIVMSARVAAGWISPED 517
>gi|91974715|ref|YP_567374.1| transcription elongation factor NusA [Rhodopseudomonas palustris
BisB5]
gi|91681171|gb|ABE37473.1| NusA antitermination factor [Rhodopseudomonas palustris BisB5]
Length = 540
Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats.
Identities = 322/527 (61%), Positives = 410/527 (77%), Gaps = 3/527 (0%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSAN+LELLQIADAVA EKSIDR +V++ M D+I KAAR+ YG+ +D+ EI+ + G++
Sbjct: 3 VSANKLELLQIADAVAREKSIDRGIVIAAMEDAIAKAARARYGSETDVHAEIDAKKGELR 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L R + VV++VEN QISLK A+ +P IG ++D LPP+++GR+A QSAKQVI+QK
Sbjct: 63 LSRHMLVVDKVENAANQISLKDAQRANPGAQIGDTIADTLPPLEYGRIAAQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQY+EFKD++G++++G VKRVEYG+VIVDLG + ++RRDE + RE+ R GDR
Sbjct: 123 VREAERDRQYMEFKDRIGDVVNGVVKRVEYGSVIVDLGRGEAIVRRDEMLPRESFRNGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++YI+DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V
Sbjct: 183 VRAYIFDVRRETRGPQIFLSRTHPQFMAKLFQQEVPEIYDGIVEIKAVARDPGSRAKIGV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V+KVV+
Sbjct: 243 VSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVSKVVI 302
Query: 302 DEDVGRIEVIVPK--EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQ DF T
Sbjct: 303 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTETEESERRQADFENST 362
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+ FM+A+NVDE++ LL +EGF VEELA V I E+ASIEGFDEETA E+Q RA EYL+
Sbjct: 363 RVFMEALNVDEVVGQLLASEGFTSVEELAMVDIRELASIEGFDEETATELQARAAEYLDR 422
Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479
++ L+ + +ELGV + L +PG+ SK+ V LGE +KT+EDLAGC+ DDL+GW+E K G
Sbjct: 423 VETELEARRQELGVEDALKDVPGVTSKMLVKLGEGDVKTVEDLAGCATDDLVGWTERKEG 482
Query: 480 -NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525
K+ G L + +D E +I+ AR K GWI +E++A +
Sbjct: 483 AEPVKYAGILDGVEMTRDDAEHLIMQARVKAGWITEEELAQTADKGE 529
>gi|86747724|ref|YP_484220.1| transcription elongation factor NusA [Rhodopseudomonas palustris
HaA2]
gi|86570752|gb|ABD05309.1| NusA antitermination factor [Rhodopseudomonas palustris HaA2]
Length = 539
Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats.
Identities = 327/522 (62%), Positives = 408/522 (78%), Gaps = 4/522 (0%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSAN+LELLQIADAVA EKSIDR +V++ M D+I KAAR+ YG+ +D+ EI+ + G++
Sbjct: 3 VSANKLELLQIADAVAREKSIDRGIVIAAMEDAIAKAARARYGSETDVHAEIDAKKGELR 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L R + VVE VEN QISLK A+ +P IG ++D LPP+++GR+A QSAKQVI+QK
Sbjct: 63 LSRHMLVVENVENPANQISLKAAQRANPGAQIGDTIADTLPPLEYGRIAAQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQY EFKD++G+I++G VKRVEYG+VIVDLG + ++RRDE + RE+ R GDR
Sbjct: 123 VREAERDRQYSEFKDRIGDIVNGVVKRVEYGSVIVDLGRGEAIVRRDEMLPRESFRNGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++YI+DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V
Sbjct: 183 VRAYIFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V+KVV+
Sbjct: 243 VSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVSKVVI 302
Query: 302 DEDVGRIEVIVPK--EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQ DF T
Sbjct: 303 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTETEESERRQADFENST 362
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+ FM+A+NVDE++ LL +EGF VEELA V I E+ASIEGFDEETA E+Q RA EYL+
Sbjct: 363 RVFMEALNVDEVVGQLLASEGFTSVEELALVDIRELASIEGFDEETATELQARASEYLDR 422
Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479
++ ++ + ELGV + L +PGI SKI V LGE +KT+EDLAGC+ DDL+GW+E K G
Sbjct: 423 VETEMEARRLELGVEDALKDVPGITSKILVKLGEGDVKTVEDLAGCATDDLVGWTERKEG 482
Query: 480 -NIEKFDGFLSSL-GTPKDQVESMIIHARYKMGWIEKEKVAD 519
KF G L + G +D+ E +I+ AR K GWI +E++A
Sbjct: 483 AEPVKFAGILDGVEGVTRDEAEDLIMQARVKAGWITEEELAS 524
>gi|49473872|ref|YP_031914.1| transcription elongation factor NusA [Bartonella quintana str.
Toulouse]
gi|49239375|emb|CAF25708.1| N utilization substance protein A [Bartonella quintana str.
Toulouse]
Length = 543
Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats.
Identities = 328/523 (62%), Positives = 417/523 (79%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
SANRLE+LQIADAVA EKSIDR++V+S MAD+IQKAARS YG ++I EIN +TG+I
Sbjct: 3 TSANRLEILQIADAVAREKSIDREIVISAMADAIQKAARSRYGQETNIHAEINSKTGEIK 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RLL++V+ VE+YT +I+L A R IG +D LPPMDFGR+A QSAKQVI+QK
Sbjct: 63 LQRLLKIVDIVEDYTTEITLSDALKRQADAKIGDFFADLLPPMDFGRIAAQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
V +AERD+QY EFK+K+GEIISGTVKRVEYGNVIVDLG + ++RRDE I RE+ GDR
Sbjct: 123 VHDAERDQQYEEFKNKIGEIISGTVKRVEYGNVIVDLGRGEAIVRRDELIPRESFHYGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+++++ DV RE RGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+++K+V+RDPGSRAK+AV
Sbjct: 183 IRAFVSDVHREPRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATF++NAL+PA V+KVVL
Sbjct: 243 VSRDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAATFIVNALQPAEVSKVVL 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DEDV RIEVIVP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S NRQK+F ER++
Sbjct: 303 DEDVERIEVIVPDDQLSLAIGRRGQNVRLASQLTGWNIDILTEQEESENRQKEFTERSKL 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM++++VDE+I ++ +EGF+ +EE+A + + EIASI+GFD ETA EIQ RAREYLE +
Sbjct: 363 FMESLDVDEMIGQVMASEGFSSIEEIAYIDLEEIASIDGFDHETAAEIQSRAREYLERKE 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
L +K ++LGVS+EL +PGI + + VA+GE+G+KT+ED AG +VDDL GW E K G
Sbjct: 423 KELDEKRKKLGVSDELRMLPGITNAMLVAIGEDGVKTIEDFAGYAVDDLAGWKERKEGQT 482
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524
+ F G L+ + E+M++ AR + GWI+K + E
Sbjct: 483 QNFSGILTPFDITRFDAEAMVLAARVQAGWIDKADLITENPAK 525
>gi|300024995|ref|YP_003757606.1| NusA antitermination factor [Hyphomicrobium denitrificans ATCC
51888]
gi|299526816|gb|ADJ25285.1| NusA antitermination factor [Hyphomicrobium denitrificans ATCC
51888]
Length = 543
Score = 528 bits (1360), Expect = e-148, Method: Composition-based stats.
Identities = 330/531 (62%), Positives = 419/531 (78%), Gaps = 6/531 (1%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
+SANRLELLQIADAVA EK+ID+ +V+ M D+IQKAA+S YG +DIR EI+P+TG+
Sbjct: 6 ISANRLELLQIADAVAREKTIDKKIVIEAMEDAIQKAAKSRYGAENDIRCEIDPKTGEAK 65
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L R+L VVE VEN QI+++ A+ R+P G ++++ LPP++FGRVA Q+AKQVI+QK
Sbjct: 66 LTRVLAVVEAVENDATQITVEDAKKRNPEAKAGDMIAETLPPLEFGRVAAQNAKQVIVQK 125
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQ+ E+KD+VG+ +GTVKRVEYGNVIVDLG ++G+IRRDE I REN+R GDR
Sbjct: 126 VREAERDRQFAEYKDRVGDTTNGTVKRVEYGNVIVDLGRAEGIIRRDEMIPRENVRLGDR 185
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++++IYDVRREQRGPQ+ L+R P+FM LF EVPEIY+G+V++K+V+RDPGSRAK+AV
Sbjct: 186 IRAFIYDVRREQRGPQIFLTRARPEFMSSLFRAEVPEIYDGVVEIKSVARDPGSRAKIAV 245
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S DSSIDPVGACVGMRG+RVQAVV EL+ EK+DI+ W+PD+A+F++NAL PA VTKVVL
Sbjct: 246 ISKDSSIDPVGACVGMRGARVQAVVNELQGEKVDIIQWNPDAASFIVNALAPAEVTKVVL 305
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP+ QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ERTQ
Sbjct: 306 DEDSNRIEVVVPEAQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQKEFAERTQL 365
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
M A++VDE+IA LLV EGFA VEE+A V ISEIA IEGFDE TA +IQ RARE++E +
Sbjct: 366 LMDALDVDEVIAQLLVTEGFASVEEVAYVDISEIAHIEGFDEGTAEQIQIRAREFIEQQE 425
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG-- 479
K RELGV++EL IPGI++ + VALGENGIKT+ED A C+ D+L+GW++ K
Sbjct: 426 AERDAKRRELGVADELAEIPGINTAMMVALGENGIKTVEDFADCATDELVGWTDRKKDKD 485
Query: 480 -NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV---ADEEVQDAS 526
K GFL + VE+MI+ AR GWI+ E + A+ E + AS
Sbjct: 486 TEPVKHKGFLDGFELSRTDVENMIMAARVHAGWIKAEDLQKPAEGEPEAAS 536
>gi|146278788|ref|YP_001168947.1| transcription elongation factor NusA [Rhodobacter sphaeroides ATCC
17025]
gi|145557029|gb|ABP71642.1| NusA antitermination factor [Rhodobacter sphaeroides ATCC 17025]
Length = 534
Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats.
Identities = 285/516 (55%), Positives = 382/516 (74%), Gaps = 2/516 (0%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+ SAN+LELLQ A+AVA EK ID D+V+ M +S+ +AA+S YG+ DIRV+I+ +TG
Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPDLVIQAMEESLARAAKSRYGSDLDIRVKIDRKTGRA 62
Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+ R+ VVE+ VEN+ QI++K A+ IG + D +PP+D GR+A QSAKQVI
Sbjct: 63 TFARIRTVVEDEAVENHHAQITVKQAKSYKSDPQIGDEIIDEVPPVDLGRIAAQSAKQVI 122
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178
+QKVREAERDRQY EFKD+ G II+G VKR EYGN+IVD+G +G++RR+E I RE+ RP
Sbjct: 123 LQKVREAERDRQYDEFKDRKGSIINGVVKREEYGNIIVDIGRGEGILRRNEKIGRESYRP 182
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
DR+++YI DVRRE RGPQV LSRT PQFM +LF MEVPEIY+GI+++KAV+RDPGSRAK
Sbjct: 183 NDRIRAYIKDVRREARGPQVFLSRTDPQFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D ATF++NAL+PA V+K
Sbjct: 243 IAVISYDNSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNQDQATFLVNALQPAEVSK 302
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VV+DE+ G+IEV+VP EQLSLAIGRRGQNVRLASQLT IDI+TE ++S RQ +F ER
Sbjct: 303 VVIDEEAGKIEVVVPDEQLSLAIGRRGQNVRLASQLTALDIDIMTEADESARRQAEFAER 362
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
T FM+ +DE++A LLV+EGF ++EE+A V E+ SI+GFDE+TA E+Q RAR++LE
Sbjct: 363 TNLFMETPGIDEMMAQLLVSEGFTNLEEVAYVDPEELLSIDGFDEDTAAELQARARDHLE 422
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ + R LG+ + L + G+ ++ AL ++GIKT+ED A C+ +L G
Sbjct: 423 EANRKALESARALGLEDSLANFEGLTPQMLEALAKDGIKTLEDFATCADWELAGGWTTVN 482
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
G K +G L ++ + +++ AR +GW++
Sbjct: 483 GQRVKDEGVLEKFDVSLEEAQHLVMTARVMLGWVDP 518
>gi|260576186|ref|ZP_05844179.1| NusA antitermination factor [Rhodobacter sp. SW2]
gi|259021666|gb|EEW24969.1| NusA antitermination factor [Rhodobacter sp. SW2]
Length = 533
Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats.
Identities = 285/519 (54%), Positives = 382/519 (73%), Gaps = 2/519 (0%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+ SAN+LELLQ A+AVA EK ID D+V+ M +S+ +AA+S YG DIRV+I+ +TG
Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPDLVIQAMEESLARAAKSRYGAELDIRVKIDRKTGRA 62
Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+ R+ VVE+ +EN+ Q++LK A P +G V D +PP+D GR+A QSAKQVI
Sbjct: 63 TFARIRTVVEDEALENHHAQLTLKQAVAIKPDAVVGDEVIDEVPPVDLGRIAAQSAKQVI 122
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178
+QKVREAERDRQ+ EFKD+ G II+G VKR EYGN+IVD+G + ++RR+E I RE+ RP
Sbjct: 123 LQKVREAERDRQFEEFKDRKGSIINGVVKREEYGNIIVDIGRGEAILRRNEKIGRESYRP 182
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
DR+++YI DVRRE RGPQV LSRT PQFM +LF MEVPEIY+GI+++KAV+RDPGSRAK
Sbjct: 183 NDRIRAYIKDVRREARGPQVFLSRTDPQFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D ATF++NAL+PA V+K
Sbjct: 243 IAVISYDNSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNQDQATFLVNALQPAEVSK 302
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VV+DE+ G+I V+VP EQLSLAIGRRGQNVRLASQLT IDI+TE +DS RQ +F ER
Sbjct: 303 VVIDEEAGKIVVVVPDEQLSLAIGRRGQNVRLASQLTALDIDIVTETDDSARRQAEFTER 362
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
T+ FM +++DE++A LLV+EGF ++EE+A V + E+ SI+GFDE TA E+Q RAR+ LE
Sbjct: 363 TKLFMDTLDIDEMMAQLLVSEGFTNLEEVAYVDLDELLSIDGFDEATAGELQARARDNLE 422
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+I + R LGV + L + G+ ++ AL ++GIKT+ED A C+ +L G
Sbjct: 423 AANIKAMENARALGVEDSLVNFEGLTPQMLEALAKDGIKTLEDFATCADWELAGGWTTVN 482
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517
G K G L ++ + +++ AR +GW++ ++
Sbjct: 483 GARVKDQGVLEEFDVSLEEAQHLVMTARVMLGWVDPAEL 521
>gi|126728006|ref|ZP_01743822.1| transcription elongation factor NusA [Sagittula stellata E-37]
gi|126710971|gb|EBA10021.1| transcription elongation factor NusA [Sagittula stellata E-37]
Length = 538
Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats.
Identities = 287/521 (55%), Positives = 383/521 (73%), Gaps = 2/521 (0%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+ SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG
Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVEAMEESLARAAKSRYGAEMDIRVSIDRKTGRA 62
Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+ R+ VVE+ +ENY +++++ A+ +G + +PP++ GR+A QSAKQVI
Sbjct: 63 TFTRVRTVVEDEELENYQAELTVQQAKQYMADPKVGDTFVEEVPPVELGRIAAQSAKQVI 122
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178
+QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP
Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGLVKREEYGNVIVDVGRGEAILRRNEKIGRESYRP 182
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
GDR++ Y+ DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI++VKAV+RDPGSRAK
Sbjct: 183 GDRIRCYVKDVRRETRGPQIFLSRTAPEFMRELFKMEVPEIYDGIIEVKAVARDPGSRAK 242
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV S D+ IDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K
Sbjct: 243 IAVISYDNGIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDVPTFLVNALQPAEVSK 302
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VVLDE+ RIEV+VP EQLSLAIGRRGQNVRLASQLTG IDI+TEEE+S RQK+F ER
Sbjct: 303 VVLDEEAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEEESKRRQKEFEER 362
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
TQ FM +++DE A LLV+EGF ++EE+A V++ E+ I+G DE TA E+Q RA+EYLE
Sbjct: 363 TQLFMDTLDLDEFFAQLLVSEGFTNLEEVAYVEMDELLVIDGVDEGTAAELQTRAQEYLE 422
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ + RELG + L + G+ ++ VAL E+G+KT+ED A C+ +L G +
Sbjct: 423 EQARQAEARARELGADDSLLAFEGLTPQMVVALAEDGVKTLEDFATCADWELAGGWTTQD 482
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVAD 519
G K DG L G D+ ++M++ AR +GW++ E++
Sbjct: 483 GQRVKDDGLLEKFGIDLDEAQNMVMTARVMLGWVDPEELVA 523
>gi|312115896|ref|YP_004013492.1| NusA antitermination factor [Rhodomicrobium vannielii ATCC 17100]
gi|311221025|gb|ADP72393.1| NusA antitermination factor [Rhodomicrobium vannielii ATCC 17100]
Length = 581
Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats.
Identities = 325/511 (63%), Positives = 405/511 (79%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
+SANRLELLQIADAVA EKSIDR +VLS M D+IQKAA+S YG+ ++IR EI+P TG+I
Sbjct: 6 ISANRLELLQIADAVAREKSIDRTLVLSAMEDAIQKAAKSRYGSENEIRAEIDPRTGEIR 65
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RLLEVVE V +ISLK A R+P ++G +++PLPP+DFGRVA Q+AKQVI+QK
Sbjct: 66 LSRLLEVVERVTLDATEISLKDAMKRNPEAEVGDFIAEPLPPLDFGRVAAQNAKQVIVQK 125
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAER+RQ+ E+KD++ EI+SG VKR EYGNV++DLG ++ +IRRDET+ REN + GDR
Sbjct: 126 VREAERERQFEEYKDRMSEIVSGVVKRAEYGNVMIDLGRAEAIIRRDETLPRENYKLGDR 185
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++Y+YDVRRE RGPQ+ LSRT P+FM KLF EVPEIY+GIV++K+V+RDPGSRAK+AV
Sbjct: 186 VRAYVYDVRRENRGPQIFLSRTRPEFMAKLFAQEVPEIYDGIVEIKSVARDPGSRAKIAV 245
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S ++S+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATF++NAL PA V KVVL
Sbjct: 246 VSKETSVDPVGACVGMRGSRVQAVVNELQGEKIDIIQWSGDPATFIVNALAPAEVAKVVL 305
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DE+ RIEV+VP EQLSLAIGR+GQNVRLASQLTGW IDI+TE E+S RQK+F ERT
Sbjct: 306 DEESERIEVVVPDEQLSLAIGRKGQNVRLASQLTGWDIDILTEAEESERRQKEFAERTAA 365
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F+ A++VDE+IA LLV+EGFA VEELA V E+A IEGFDE TA+EIQ RARE+LE +
Sbjct: 366 FVNALDVDEMIAQLLVSEGFASVEELAFVDSHEVAIIEGFDENTALEIQERAREFLERQE 425
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
L +K R LGV++EL +PG+ + + VA GEN IKT+EDLA C+ D+L GW+E G
Sbjct: 426 AELNEKRRALGVADELAEVPGVTTAMLVAFGENNIKTVEDLADCATDELAGWTERAHGQT 485
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512
++ G L K +E +II AR K GWI
Sbjct: 486 KQNPGILQGFDLSKSDIEHLIIAARVKAGWI 516
>gi|159046101|ref|YP_001534895.1| transcription elongation factor NusA [Dinoroseobacter shibae DFL
12]
gi|157913861|gb|ABV95294.1| transcription elongation protein nusA [Dinoroseobacter shibae DFL
12]
Length = 544
Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats.
Identities = 286/526 (54%), Positives = 384/526 (73%), Gaps = 2/526 (0%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+ SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRV I+ +TG
Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVIEAMEESLARAAKSRYGSEMDIRVSIDRKTGVA 62
Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+ R+ VVE+ +ENY +++++ A+ +G + D +PP++ GR+A QSAKQVI
Sbjct: 63 TFTRVRTVVEDEELENYQAELTVEQAKPYLDDPKVGDTIVDQVPPVEMGRIAAQSAKQVI 122
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178
+QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G +GV+RR+E I RE+ RP
Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGVVKREEYGNVIVDIGRGEGVLRRNEKIGRESYRP 182
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
DR++ YI DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK
Sbjct: 183 NDRIRCYIKDVRREVRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K
Sbjct: 243 IAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VVLDED RIEV+VP EQLSLAIGRRGQNVRLASQLTG IDI+TE ++S RQ +F ER
Sbjct: 303 VVLDEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGLDIDIMTEAQESERRQAEFAER 362
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
T F++A++VDE++A LLV+EGF ++EE+A V+ E+ I+GFDE+TA E+Q RARE+LE
Sbjct: 363 TNMFVEALDVDEVLAQLLVSEGFTNLEEVAYVEQEELLVIDGFDEDTAEELQTRAREFLE 422
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
++ RE+GV + L G+ ++ AL +G+KT+ED A C+ +L G
Sbjct: 423 EQAKKALERAREMGVEDSLVEFEGLTPQMLEALAADGVKTLEDFATCADWELAGGWTTVD 482
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524
G K +G L ++ + +++ AR ++GW+ E + EE D
Sbjct: 483 GERVKDEGVLEKFDVSLEEAQLLVMTARVQLGWVNPEDLEIEEDAD 528
>gi|310817128|ref|YP_003965092.1| transcription elongation factor NusA [Ketogulonicigenium vulgare
Y25]
gi|308755863|gb|ADO43792.1| transcription elongation factor NusA [Ketogulonicigenium vulgare
Y25]
Length = 533
Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats.
Identities = 279/515 (54%), Positives = 375/515 (72%), Gaps = 2/515 (0%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+ SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG
Sbjct: 3 ITSANQLELLQTAEAVAREKLIDPSLVVEAMEESLARAAKSRYGADMDIRVHIDRKTGRA 62
Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
R+ VVE+ VENY ++++ A+ + ++G + + +PP+D GR+A QSAKQVI
Sbjct: 63 HFSRVRTVVEDDAVENYHAEMTVDQAKLYMSNPEVGDIFEEEIPPVDLGRIAAQSAKQVI 122
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178
+QK+REAERDRQY EFK + G II+GTVKR EYGN+IVD+G + ++RR+E I RE+ RP
Sbjct: 123 LQKIREAERDRQYEEFKHRQGTIINGTVKREEYGNLIVDVGAGEAILRRNEKIGRESYRP 182
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
DR++ Y+ DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY G++++KAV+RDPGSRAK
Sbjct: 183 NDRIRCYVKDVRREVRGPQIFLSRTAPEFMRELFKMEVPEIYEGVIEIKAVARDPGSRAK 242
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA VTK
Sbjct: 243 IAVLSNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWNEDMPTFLVNALQPAEVTK 302
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VVLDED RIEV+VP +QLSLAIGRRGQNVRLASQLT IDI+TE E+S RQ +F R
Sbjct: 303 VVLDEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTNLDIDIMTESEESKRRQAEFEAR 362
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
T+ FM+ +++DE A LLVAEGF ++EE+A V + E+ +IEG DE TA E+Q RAR+++E
Sbjct: 363 TKLFMETLDLDEFFAQLLVAEGFTNLEEVAYVDLDELTTIEGVDEATAGEVQARARDHIE 422
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ + R LG + L S PG+ ++ AL ++G+KT+ED A C+ +L G
Sbjct: 423 SQNEKALEAARALGAEDSLISFPGLTPQMVEALAKDGVKTLEDFATCADWELAGGWTTVE 482
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
G K DG L ++ ++MI+ AR +GW++
Sbjct: 483 GKRVKDDGVLEPFDLSLEEAQTMIMTARVSLGWVD 517
>gi|126724629|ref|ZP_01740472.1| transcription elongation factor NusA [Rhodobacterales bacterium
HTCC2150]
gi|126705793|gb|EBA04883.1| transcription elongation factor NusA [Rhodobacterales bacterium
HTCC2150]
Length = 534
Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats.
Identities = 282/517 (54%), Positives = 380/517 (73%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+ SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG
Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPSLVIEAMEESLARAAKSRYGAEMDIRVSIDRKTGRA 62
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
+ R+ VVEEVENY + +++ A+ ++G V+D +PP++ GR+A QSAKQVI+Q
Sbjct: 63 TFTRVRTVVEEVENYQAEFTVEEAKPYKADAEVGDEVTDEVPPVEMGRIAAQSAKQVILQ 122
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
K+REAERDRQ+ EF+D+ G II+G VKR EYGNVIVD+G +GV+RR+E I RE+ RP D
Sbjct: 123 KIREAERDRQFEEFQDRAGTIINGVVKREEYGNVIVDVGRGEGVLRRNEKIGRESYRPND 182
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
R++ +I DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+ +KAV+RDPGSRAK+A
Sbjct: 183 RIRCFIKDVRREARGPQIFLSRTAPEFMAELFKMEVPEIYDGIIDIKAVARDPGSRAKIA 242
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D+ TF++NAL+PA V+KVV
Sbjct: 243 VISHDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDAPTFLVNALQPAEVSKVV 302
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
LDE+ RIEV+VP EQLSLAIGRRGQNVRLASQLTG IDI+TE E+S RQ +FNERT
Sbjct: 303 LDEEAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGLDIDILTEAEESKRRQAEFNERTG 362
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
FM+A+++DE A LLVAEGF +EE+A V++ E+ I+G DE TA E+Q RAR+Y+E +
Sbjct: 363 LFMEALDLDEFFAQLLVAEGFRTLEEVAYVEVDELLVIDGVDEGTAGELQARARDYIEAL 422
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ ++ ELGV + L G+ ++ AL E+G+ ++ED A C+ +L G G
Sbjct: 423 NKKALERAVELGVVQSLIDFEGLTPQMIEALAEDGVLSLEDFATCADWELAGGWTTVDGE 482
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517
K DG L ++ ++M++ AR ++GW++ +
Sbjct: 483 RVKDDGVLEKFDVALEEAQNMVMTARIQLGWVDPADL 519
>gi|294675770|ref|YP_003576385.1| transcription elongation factor NusA [Rhodobacter capsulatus SB
1003]
gi|294474590|gb|ADE83978.1| transcription elongation factor NusA [Rhodobacter capsulatus SB
1003]
Length = 536
Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats.
Identities = 285/519 (54%), Positives = 385/519 (74%), Gaps = 2/519 (0%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+ SAN+LELLQ A+AVA EK ID D+V+ M DS+ +AA+S YG+ DIRV+I+ +TG
Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPDLVIQAMEDSLARAAKSRYGSEMDIRVKIDRKTGRA 62
Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
S R+ VVE+ VENY Q+++ A+ + +G + D +PP+D GR+A QSAKQVI
Sbjct: 63 SFTRVRTVVEDEAVENYQAQLTVAQAKQYKTNPQLGDEIVDEVPPVDLGRIAAQSAKQVI 122
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178
+QKVREAERDRQ+ EFKD+ G II+G VKR EYGN+IVD+G + ++RR+E I RE+ RP
Sbjct: 123 LQKVREAERDRQFDEFKDRKGTIINGVVKREEYGNIIVDIGRGEAILRRNEKIGRESYRP 182
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
DR+++Y+ DVRRE RGPQV LSRT PQFM +LF MEVPEIY+GI+++KAV+RDPGSRAK
Sbjct: 183 NDRIRAYVKDVRRETRGPQVFLSRTDPQFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV S+D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D+ATF++NAL+PA V K
Sbjct: 243 IAVISNDNSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWNADAATFLVNALQPAEVAK 302
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VV+DE+ G+IEV+VP EQLSLAIGRRGQNVRLASQLTG IDI+TE E+S RQ +F ER
Sbjct: 303 VVIDEEAGKIEVVVPDEQLSLAIGRRGQNVRLASQLTGLDIDILTEAEESSRRQAEFAER 362
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
T+ F+ A+++DE A LLVAEGF ++EE+A V + E+ SIEG D+ TA E+Q RAR+Y+E
Sbjct: 363 TKLFVDALDLDEFFAQLLVAEGFTNLEEVAYVDLDELLSIEGVDDGTAEELQARARDYIE 422
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ +ELGV + L + G+ ++ AL ++ +KT+ED A C+ +L G
Sbjct: 423 AQNAKAIAAAKELGVEDSLFNFEGLTPQMIEALAKDDVKTLEDFATCADWELAGGWTTVN 482
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517
G K +G L G + + +I+ AR ++GW++ ++
Sbjct: 483 GARVKDEGILEKFGMSLEDAQKLIMTARIQLGWVDISEL 521
>gi|84684618|ref|ZP_01012519.1| transcription elongation factor NusA [Maritimibacter alkaliphilus
HTCC2654]
gi|84667597|gb|EAQ14066.1| transcription elongation factor NusA [Rhodobacterales bacterium
HTCC2654]
Length = 539
Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats.
Identities = 276/519 (53%), Positives = 377/519 (72%), Gaps = 2/519 (0%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+ SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG
Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPSLVIEAMEESLARAAKSRYGAEMDIRVSIDRKTGRA 62
Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+ R+ VVE+ +ENY +++++ A+ + +G + D +PP++ GR+A QSAKQVI
Sbjct: 63 TFTRVRTVVEDEELENYQAELTVEQAKQYLDNPVVGDTIVDEVPPVELGRIAAQSAKQVI 122
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178
+QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP
Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGVVKREEYGNVIVDVGAGEAILRRNEKIGRESYRP 182
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
DR++ Y+ DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK
Sbjct: 183 NDRIRCYVKDVRRETRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+ V S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V K
Sbjct: 243 IGVVSYDNSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDMPTFLVNALQPAEVAK 302
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VVLDED RIEV+VP +QLSLAIGRRGQNVRLASQLTG IDI+TEEE+S RQ +F ER
Sbjct: 303 VVLDEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGLDIDILTEEEESARRQAEFAER 362
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
T+ FM +++DE A LLV+EGF ++EE+A V++ E+ I+G DE+TA E+Q RAR++L+
Sbjct: 363 TKLFMDTLDLDEFFAQLLVSEGFTNLEEVAYVEVDELLVIDGVDEDTANELQARARDFLD 422
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ + + LGV + L G+ ++ AL ++G+ T+ED A C+ +L G
Sbjct: 423 EQNRKALENAKALGVQDSLIGFEGLTPQMIEALAKDGVFTLEDFATCADWELAGGWTTVD 482
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517
G K DG L ++ ++MI+ AR ++GW++ +
Sbjct: 483 GERSKDDGVLEPFDVGLEEAQNMIMTARIQLGWVDPADL 521
>gi|56694991|ref|YP_165337.1| transcription elongation factor NusA [Ruegeria pomeroyi DSS-3]
gi|56676728|gb|AAV93394.1| transcription termination factor NusA [Ruegeria pomeroyi DSS-3]
Length = 541
Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats.
Identities = 280/516 (54%), Positives = 370/516 (71%), Gaps = 2/516 (0%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+ SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG
Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVIEAMEESLARAAKSRYGAEMDIRVSIDRKTGKA 62
Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+ R+ VV EE+ENY + ++ A+ + IG + +PP++ GR+A QSAKQVI
Sbjct: 63 TFTRVRTVVADEELENYQAEFTVDQAKQYMENPQIGDTFVEEVPPVEMGRIAAQSAKQVI 122
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178
+QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP
Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGLVKREEYGNVIVDVGAGEAILRRNEKIGRESYRP 182
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
DR++ YI DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK
Sbjct: 183 NDRIRCYIKDVRREPRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K
Sbjct: 243 IAVISYDNSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TE E+S RQK+F R
Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEAEESARRQKEFESR 362
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
T FM+ +++DE A LLV+EGF ++EE+A V++ E+ I+G DE TA E+Q RAR+YLE
Sbjct: 363 TNLFMETLDLDEFFAQLLVSEGFTNLEEVAYVELDELLVIDGVDEGTAEELQARARDYLE 422
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
R LG + L G+ ++ AL ++ +KT+ED A C+ +L G
Sbjct: 423 AQAKAALDNARALGAEDSLIQFEGLTPQMVEALAKDDVKTLEDFATCADWELAGGWTTVD 482
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
G K DG L G + + M++ AR +GW++
Sbjct: 483 GQRVKDDGILEPFGVSLEDAQDMVMTARVMLGWVDP 518
>gi|77464744|ref|YP_354248.1| transcription elongation factor NusA [Rhodobacter sphaeroides
2.4.1]
gi|126463584|ref|YP_001044698.1| transcription elongation factor NusA [Rhodobacter sphaeroides ATCC
17029]
gi|221640658|ref|YP_002526920.1| transcription elongation factor NusA [Rhodobacter sphaeroides
KD131]
gi|332559637|ref|ZP_08413959.1| transcription elongation factor NusA [Rhodobacter sphaeroides WS8N]
gi|77389162|gb|ABA80347.1| N-utilization substance protein A [Rhodobacter sphaeroides 2.4.1]
gi|126105248|gb|ABN77926.1| NusA antitermination factor [Rhodobacter sphaeroides ATCC 17029]
gi|221161439|gb|ACM02419.1| NusA antitermination factor [Rhodobacter sphaeroides KD131]
gi|332277349|gb|EGJ22664.1| transcription elongation factor NusA [Rhodobacter sphaeroides WS8N]
Length = 535
Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats.
Identities = 284/516 (55%), Positives = 383/516 (74%), Gaps = 2/516 (0%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+ SAN+LELLQ A+AVA EK ID D+V+ M +S+ +AA+S YG+ DIRV+I+ +TG
Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPDLVIQAMEESLARAAKSRYGSDLDIRVKIDRKTGRA 62
Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+ R+ VVE+ +EN+ Q+++K AR IG + D +PP+D GR+A QSAKQVI
Sbjct: 63 TFARIRTVVEDELIENHHAQVTVKQARSYLADPKIGDEIIDEVPPVDLGRIAAQSAKQVI 122
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178
+QKVREAERDRQY EFKD+ G II+G VKR EYGN+IVD+G +G++RR+E I RE+ RP
Sbjct: 123 LQKVREAERDRQYDEFKDRKGTIINGVVKREEYGNIIVDIGRGEGILRRNEKIGRESYRP 182
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
DR+++YI DVRRE RGPQV LSRT PQFM +LF MEVPEIY+GI+++KAV+RDPGSRAK
Sbjct: 183 NDRIRAYIKDVRREARGPQVFLSRTDPQFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D ATF++NAL+PA V+K
Sbjct: 243 IAVISYDNSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNQDQATFLVNALQPAEVSK 302
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VV+DE+ G+IEV+VP EQLSLAIGRRGQNVRLASQLT IDI+TE ++S RQ +F ER
Sbjct: 303 VVIDEEAGKIEVVVPDEQLSLAIGRRGQNVRLASQLTALDIDIMTEADESARRQAEFAER 362
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
T FM+ +++DE++A LLV+EGF ++EE+A V E+ SI+GFDE+TA E+Q RAR++LE
Sbjct: 363 TNLFMETLDIDEMMAQLLVSEGFTNLEEVAYVDPEELLSIDGFDEDTAAELQARARDHLE 422
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ + R LG+ + L G+ ++ AL ++GIKT+ED A C+ +L G
Sbjct: 423 EANRKALESARALGLEDSLAGFEGLTPQMLEALAKDGIKTLEDFATCADWELAGGWTTVN 482
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
G K +G L ++ + +++ AR +GW++
Sbjct: 483 GQRVKDEGVLEKFDVSLEEAQHLVMTARVMLGWVDP 518
>gi|260429111|ref|ZP_05783088.1| NusA antitermination factor [Citreicella sp. SE45]
gi|260419734|gb|EEX12987.1| NusA antitermination factor [Citreicella sp. SE45]
Length = 543
Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats.
Identities = 288/516 (55%), Positives = 379/516 (73%), Gaps = 2/516 (0%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+ SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRV+I+ TG
Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVIEAMEESLARAAKSRYGSEMDIRVKIDRRTGRA 62
Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+ R+ VVE+ +ENY ++++K A+ +G + +PP+D GR+A QSAKQVI
Sbjct: 63 TFTRVRTVVEDEELENYQAELTVKQAKQYMADPKVGDQFIEEVPPVDMGRIAAQSAKQVI 122
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178
+QKVREAERDRQY EFKD+ G II+GTVKR EYGNVIVD+G +G++RR+E I RE+ RP
Sbjct: 123 LQKVREAERDRQYDEFKDRAGTIINGTVKREEYGNVIVDIGRGEGILRRNEKIGRESYRP 182
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
GDR++ YI DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK
Sbjct: 183 GDRIRCYIKDVRREARGPQIFLSRTSPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K
Sbjct: 243 IAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDVPTFLVNALQPAEVSK 302
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VVLDED RIEV+VP EQLSLAIGRRGQNVRLASQLTG IDI+TEEE+S RQ +F +R
Sbjct: 303 VVLDEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEEESKRRQAEFEQR 362
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
T+ FM +++DE A LLVAEGF ++EE+A V++ E+ I+G DE+TA E+Q RARE+LE
Sbjct: 363 TKLFMDTLDLDEFFAQLLVAEGFTNLEEVAYVELDELLVIDGVDEDTAQELQTRAREFLE 422
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ RELG + L G+ ++ AL E+G+KT+ED A C+ +L G +G
Sbjct: 423 EQARKALEHARELGAEDSLIEFEGLTPQMVEALAEDGVKTLEDFATCADWELAGGWTTEG 482
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
G K DG L + +++I+ AR +GW++
Sbjct: 483 GERVKDDGLLEKFDVDLAEAQNLIMTARVLLGWVDP 518
>gi|114762088|ref|ZP_01441556.1| transcription elongation factor NusA [Pelagibaca bermudensis
HTCC2601]
gi|114545112|gb|EAU48115.1| transcription elongation factor NusA [Roseovarius sp. HTCC2601]
Length = 542
Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats.
Identities = 287/516 (55%), Positives = 376/516 (72%), Gaps = 2/516 (0%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+ SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRV+I+ +TG
Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPALVIEAMEESLARAAKSRYGSEMDIRVKIDRKTGRA 62
Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+ R+ VVE+ +ENY ++++K A+ +G + +PP+D GR+A QSAKQVI
Sbjct: 63 TFTRVRTVVEDEELENYQAEMTVKQAKQYMADPQVGDQYVEEVPPVDMGRIAAQSAKQVI 122
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178
+QKVREAERDRQY EFKD+ G II+GTVKR EYGNVIVD+G +G++RR+E I RE RP
Sbjct: 123 LQKVREAERDRQYDEFKDRNGTIINGTVKREEYGNVIVDIGRGEGILRRNEKIGREAYRP 182
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
GDR++ YI DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK
Sbjct: 183 GDRIRCYIKDVRREARGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+ V S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K
Sbjct: 243 IGVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDMPTFLVNALQPAEVSK 302
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VVLDED RIEV+VP EQLSLAIGRRGQNVRLASQLTG IDI+TEEE+S RQK+F ER
Sbjct: 303 VVLDEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEEESARRQKEFEER 362
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
T+ FM +++DE A LLVAEGF ++EE+A V++ E+ I+G D++TA E+Q RARE+LE
Sbjct: 363 TKLFMDTLDLDEFFAQLLVAEGFTNLEEVAYVELDELLVIDGVDDDTAQELQTRAREFLE 422
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
RELG + L G+ ++ AL E+G+KT+ED A C+ +L G
Sbjct: 423 EQARKALAHARELGAEDSLIEFDGLTPQMVEALAEDGVKTLEDFATCADWELAGGWTTVN 482
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
G K DG L + +++I+ AR +GW++
Sbjct: 483 GERVKDDGLLEKFDVDLAEAQNLIMTARVLLGWVDP 518
>gi|209966175|ref|YP_002299090.1| transcription elongation factor NusA [Rhodospirillum centenum SW]
gi|209959641|gb|ACJ00278.1| transcription elongation factor NusA [Rhodospirillum centenum SW]
Length = 511
Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats.
Identities = 291/506 (57%), Positives = 381/506 (75%), Gaps = 16/506 (3%)
Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66
+ELLQ+ADAVA EK+ID++ VL M ++I+KA RS YG DIR I+ +TG+I L R L
Sbjct: 1 MELLQVADAVAREKNIDKEHVLEAMEEAIKKAGRSKYGHEHDIRARIDRKTGEIQLTRYL 60
Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
EVVE VEN QI L A+ ++P+ +G + DPLPP+DFGR+A Q+AKQVI+QKVREAE
Sbjct: 61 EVVETVENEALQIDLAKAKRKNPAAKVGDFIVDPLPPIDFGRIAAQTAKQVIVQKVREAE 120
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
R+RQ+ E+KD++GEI++G VKRVEYGNV VDLG ++GV+RRDE++ RE+ + GDRV++YI
Sbjct: 121 RERQFNEYKDRMGEIVNGLVKRVEYGNVTVDLGRAEGVLRRDESLPREHFKTGDRVRAYI 180
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
YDVRREQRGPQ+ LSRTHP FM LF EVPEIY+GI+++KAV+RDPGSRAK+AV S DS
Sbjct: 181 YDVRREQRGPQIFLSRTHPMFMAGLFKQEVPEIYDGIIEIKAVARDPGSRAKIAVISKDS 240
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D ATFV+NAL PA V KVVLDE+ G
Sbjct: 241 SIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWNRDPATFVVNALAPAEVAKVVLDEENG 300
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+IEV+VP +QLSLAIGRRGQNVRLAS LTGW IDI+TE+E+S RQ++F R+Q FM+A+
Sbjct: 301 KIEVVVPDDQLSLAIGRRGQNVRLASMLTGWDIDIMTEKEESDRRQEEFRTRSQLFMEAL 360
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426
+VD++IAHLLVAEGF VEE+A V + E+ +I+ FDE+ A E+Q RA+ +LE + L++
Sbjct: 361 DVDDVIAHLLVAEGFTSVEEIAFVDLDELTAIDAFDEDVAAELQNRAQAFLEEQNARLEE 420
Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486
K R LGV +++ ++ + + V LGENG+KT++DLA + D+L
Sbjct: 421 KRRALGVDDDVAAVEALTPAMLVKLGENGVKTLDDLADLAGDELSEIVGKDA-------- 472
Query: 487 FLSSLGTPKDQVESMIIHARYKMGWI 512
D ++I+ AR W
Sbjct: 473 ------LSVDDANAVIMAARAH--WF 490
>gi|114571580|ref|YP_758260.1| transcription elongation factor NusA [Maricaulis maris MCS10]
gi|114342042|gb|ABI67322.1| NusA antitermination factor [Maricaulis maris MCS10]
Length = 572
Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats.
Identities = 312/518 (60%), Positives = 391/518 (75%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSANRLELLQIA AVA EKSID +V+ + ++IQKAARS YG +DIR +I+P+TG++S
Sbjct: 5 VSANRLELLQIARAVAAEKSIDESIVIEAIEEAIQKAARSRYGAENDIRAKIDPKTGELS 64
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L R + VVEEVEN + +++L A+ D + +IG V SD LPP++FGRVA Q+AKQVI QK
Sbjct: 65 LTRNMTVVEEVENDSQELTLADAKKIDKTAEIGTVFSDELPPIEFGRVASQTAKQVITQK 124
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAER RQ+ E+KD+VGEIISG VKRVEYGNVI+DLG ++ +IRR + I RENL+ +R
Sbjct: 125 VREAERQRQFEEYKDRVGEIISGIVKRVEYGNVIIDLGRAEAIIRRADGIPRENLQNNER 184
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++YIYDVR E RGPQ+ LSR HP FM LF EVPE+Y GI+++ +V+RDPGSRAK+AV
Sbjct: 185 VRAYIYDVREEVRGPQIFLSRAHPDFMAALFAQEVPEVYEGIIEIPSVARDPGSRAKIAV 244
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+D SIDPVGACVGMRGSRVQAVV+EL EKIDI+ WS D ATF++NAL+PA V KVVL
Sbjct: 245 ISNDGSIDPVGACVGMRGSRVQAVVSELAGEKIDIIPWSDDPATFIVNALQPAEVAKVVL 304
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DE+ RIEV+VP EQLSLAIGRRGQNVRLASQLTGW+IDI+TEEE+S RQK+F ERTQ
Sbjct: 305 DEEDQRIEVVVPDEQLSLAIGRRGQNVRLASQLTGWSIDILTEEEESERRQKEFAERTQI 364
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F+ A++VDE+IA LL EGF DVE+LA + EI +IEGFDE+TA EIQ RAR+YL+ +
Sbjct: 365 FIAALDVDEVIAQLLATEGFTDVEDLAYADLGEIGAIEGFDEDTAEEIQARARDYLDRLS 424
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
K +ELGV + + + G+ + V GEN +KT++DLAG DDL GW E K G
Sbjct: 425 AEQDAKRKELGVEDAVLEVEGVVLAMAVKFGENDVKTVDDLAGLVTDDLRGWFETKNGER 484
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVAD 519
+ G L + E MI+ AR GWI +E +
Sbjct: 485 VREPGILEEFNLAAEDAEMMIMRARVAAGWISEEDLPQ 522
>gi|83945005|ref|ZP_00957371.1| transcription elongation factor NusA [Oceanicaulis alexandrii
HTCC2633]
gi|83851787|gb|EAP89642.1| transcription elongation factor NusA [Oceanicaulis alexandrii
HTCC2633]
Length = 578
Score = 518 bits (1333), Expect = e-144, Method: Composition-based stats.
Identities = 304/519 (58%), Positives = 386/519 (74%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSAN+LE+LQIA AVA EK ID +VL + ++IQKAARS YG DI +INP+TG++
Sbjct: 5 VSANKLEILQIARAVAQEKMIDESIVLEAIEEAIQKAARSRYGAELDIHCKINPKTGEMR 64
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L VVEEVEN QI+L A+ RDP +IG + LPP++FGRVA Q+AKQVI QK
Sbjct: 65 LTSRTTVVEEVENEAHQITLDEAKKRDPEAEIGSFYEEELPPIEFGRVASQTAKQVITQK 124
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAER RQ+ E+KD++GEI++G VKRVEYGNVI+DLG ++G+IRR + I RE+L+ DR
Sbjct: 125 VREAERKRQFNEYKDRIGEIVNGIVKRVEYGNVIIDLGKAEGIIRRSDGIPRESLQVNDR 184
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++YIYDVR E RGPQ+ LSR HP FM LF EVPE+Y G++++ V+RDPGSRAK+AV
Sbjct: 185 VRAYIYDVREETRGPQIFLSRAHPDFMAALFAQEVPEVYEGVIEIPRVARDPGSRAKIAV 244
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+DSSIDPVGACVGMRGSRVQAVV EL EKIDI+ W+PD ATF++NAL+PA V KVVL
Sbjct: 245 ISNDSSIDPVGACVGMRGSRVQAVVNELAGEKIDIIPWNPDPATFIVNALQPAEVAKVVL 304
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
D++ RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TEEE+S RQK+F+ERT
Sbjct: 305 DDEAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWAIDILTEEEESERRQKEFSERTST 364
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM A++VDE+IA LL EGFA+VE++A V++ EIA IEGFD++TA EIQ RARE+LE
Sbjct: 365 FMNALDVDEVIAQLLATEGFAEVEDIAFVELDEIAVIEGFDDDTAQEIQTRAREFLEKRA 424
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ +ELGV + + + G+D + V GEN + T+EDLAG + DDL GW E + G
Sbjct: 425 AEQDARRKELGVEDAVLDVEGVDLPMAVKFGENEVCTIEDLAGLTPDDLRGWYETRDGER 484
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADE 520
+ G L + E +I+ AR GWI +E +
Sbjct: 485 VREPGILEGSDMSPEDAEMLIMRARVIAGWISEEDLPQA 523
>gi|110677786|ref|YP_680793.1| transcription elongation factor NusA [Roseobacter denitrificans OCh
114]
gi|109453902|gb|ABG30107.1| transcription termination factor NusA, putative [Roseobacter
denitrificans OCh 114]
Length = 538
Score = 518 bits (1333), Expect = e-144, Method: Composition-based stats.
Identities = 276/520 (53%), Positives = 376/520 (72%), Gaps = 2/520 (0%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+ SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG
Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVEAMEESLARAAKSRYGAEMDIRVHIDRKTGRA 62
Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+ R+ VVE+ +ENY + +++ A+ + ++G + + +PP++ GR+A QSAKQVI
Sbjct: 63 TFTRVRTVVEDELLENYQAEFTVEQAKQYMENPEVGQQLIEEVPPVEMGRIAAQSAKQVI 122
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178
+QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP
Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGLVKREEYGNVIVDVGAGEAILRRNEKIGRESYRP 182
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
DR++ YI DVRREQRGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK
Sbjct: 183 NDRIRVYIKDVRREQRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K
Sbjct: 243 IAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEE++S RQ +F R
Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEQESARRQAEFELR 362
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
T+ F+ +++DE A LLV+EGF +EE+A V++ E+ I+G DE+TA E+Q RAR+ LE
Sbjct: 363 TKLFVDNLDLDEFFAQLLVSEGFTSLEEVAYVEVDELLVIDGVDEDTANELQARARDVLE 422
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ + R LGV + L G+ ++ AL ++ +KT+ED A C+ +L G
Sbjct: 423 AQNKAALESARALGVEDSLIEFEGLTPQMIEALAKDDVKTLEDFATCADWELAGGWTTVD 482
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518
G K DG L ++ + +I+ AR +GW++ +
Sbjct: 483 GERSKDDGVLEPFDVTLEEAQDLIMTARVMLGWVDPADLE 522
>gi|83950734|ref|ZP_00959467.1| transcription elongation factor NusA [Roseovarius nubinhibens ISM]
gi|83838633|gb|EAP77929.1| transcription elongation factor NusA [Roseovarius nubinhibens ISM]
Length = 544
Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats.
Identities = 282/516 (54%), Positives = 376/516 (72%), Gaps = 2/516 (0%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+ SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG
Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVEAMEESLARAAKSRYGAEMDIRVSIDRKTGRA 62
Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+ R+ VVEE +ENY +++++ A+ +G + +PP+D GR+A QSAKQVI
Sbjct: 63 TFTRVRTVVEEEELENYQAELTVEQAKQYLDDPKVGDQYIEEVPPVDMGRIAAQSAKQVI 122
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178
+QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP
Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGMVKREEYGNVIVDVGRGEAILRRNEKIGRESYRP 182
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
+R++ YI DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK
Sbjct: 183 NERIRCYIKDVRREARGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K
Sbjct: 243 IAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VVLDE+ RIEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TE EDS RQ++F ER
Sbjct: 303 VVLDEEAERIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEAEDSERRQREFEER 362
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
T+ FM +++DE A LLV+EGF ++EE+A V+ E+ I+G DE+TA E+Q RAR+ LE
Sbjct: 363 TKLFMDTLDLDEFFAQLLVSEGFTNLEEVAYVEQDELLVIDGVDEDTAGELQARARDVLE 422
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
++ RELGV + L G+ ++ AL E+G+KT+ED A C+ +L G +
Sbjct: 423 ARAKAALERARELGVEDSLVEFEGLTPQMIQALAEDGVKTLEDFATCADWELAGGWTMQD 482
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
G K DG L ++ ++M++ AR +GW++
Sbjct: 483 GQRVKDDGILEPFDVSLEEAQAMVMTARVMLGWVDP 518
>gi|149202949|ref|ZP_01879920.1| transcription elongation factor NusA [Roseovarius sp. TM1035]
gi|149143495|gb|EDM31531.1| transcription elongation factor NusA [Roseovarius sp. TM1035]
Length = 540
Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats.
Identities = 283/519 (54%), Positives = 380/519 (73%), Gaps = 2/519 (0%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+ SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRV I+ +TG
Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPALVVEAMEESLARAAKSRYGSEMDIRVNIDRKTGRA 62
Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
R+ VVE+ VENY ++++ A+ +G + +PP++ GR+A QSAKQVI
Sbjct: 63 KFTRVRTVVEDEAVENYQAEMTVAQAKQYLDDPKVGDTYVEEVPPVEMGRIAAQSAKQVI 122
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178
+QKVREAERDRQ+ EFKD++G II+G VKR EYGNVIVD+G + ++RR+E I RE RP
Sbjct: 123 LQKVREAERDRQFEEFKDRLGTIINGVVKREEYGNVIVDVGRGEAILRRNEKIGREAYRP 182
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
DRV+ YI DVRREQRGPQ+ LSRT PQFM +LF MEVPEIY+GI+++KAV+RDPGSRAK
Sbjct: 183 NDRVRCYIKDVRREQRGPQIFLSRTDPQFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D ATF++NAL+PA V+K
Sbjct: 243 IAVISYDNSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQATFLVNALQPAEVSK 302
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VV+DED RIEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TE EDS RQK+F ER
Sbjct: 303 VVIDEDAQRIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEAEDSERRQKEFEER 362
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
T+ F+ A+++DE A LLV+EGF ++EE+A V + E+ I+G DE+TA E+Q RAR+ +E
Sbjct: 363 TKLFVDALDLDEFFAQLLVSEGFTNLEEVAYVDVDELLVIDGVDEDTAAELQARARDMIE 422
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
K RELGV + L + G+ ++ +AL E+ +K++ED A C+ +L G
Sbjct: 423 AQAKAALDKARELGVEDSLIAFEGLTPQMVLALAEDDVKSLEDFATCADWELAGGWTTVK 482
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517
G K +G L ++ ++M++ AR +GW++ ++
Sbjct: 483 GERVKDEGILEKFDVSLEEAQNMVMTARVMLGWVDPTEL 521
>gi|119385319|ref|YP_916375.1| transcription elongation factor NusA [Paracoccus denitrificans
PD1222]
gi|119375086|gb|ABL70679.1| NusA antitermination factor [Paracoccus denitrificans PD1222]
Length = 559
Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats.
Identities = 292/548 (53%), Positives = 382/548 (69%), Gaps = 23/548 (4%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+ SAN+LELLQ A+AVA EK ID D+V+ M DS+ +AA+S YG+ DIRV I+ +TG+
Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPDLVIEAMEDSLARAAKSRYGSEMDIRVHIDRKTGNA 62
Query: 61 SLFRLLEVVEE--VENYTCQISLKVAR---------------------DRDPSIDIGGVV 97
+ R VVE+ VENY Q + A D G V
Sbjct: 63 TFTRARTVVEDEAVENYQAQFTADQAAPYFEPSKDGRAHWLRDGAQLADFSGRPQPGDVF 122
Query: 98 SDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVD 157
+ +PP+D GR+A QSAKQVI+Q+VREAERDRQY EFKD+VG II+G VKR EYGN+IVD
Sbjct: 123 EEQVPPVDLGRIAAQSAKQVILQRVREAERDRQYEEFKDRVGSIINGVVKREEYGNIIVD 182
Query: 158 LGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVP 217
+G + ++RR+E I RE+ RP DR+++Y+ DVRRE RGPQ+ LSRT PQFM +LF MEVP
Sbjct: 183 VGRGEAILRRNEKIGRESYRPNDRIRAYVKDVRREARGPQIFLSRTDPQFMAELFKMEVP 242
Query: 218 EIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIV 277
EIY+G++++KAV+RDPGSRAK+AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+
Sbjct: 243 EIYDGVIEIKAVARDPGSRAKIAVISYDNSIDPVGACVGMRGSRVQAVVGELQGEKIDII 302
Query: 278 VWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337
WS D ATF++NAL+PA V KVV DED RIEV+VP EQLSLAIGRRGQNVRLASQLTG
Sbjct: 303 PWSDDQATFLVNALQPAEVAKVVFDEDATRIEVVVPDEQLSLAIGRRGQNVRLASQLTGL 362
Query: 338 TIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIAS 397
IDI+TEEE+S RQ +FN RT+ FM A+++DE A LLVAEGF ++EE+A V + E+ S
Sbjct: 363 DIDILTEEEESKRRQAEFNARTKLFMDALDLDEFFAQLLVAEGFTNLEEVAYVDLDELLS 422
Query: 398 IEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIK 457
IEG DE TA E+Q RARE+LE + + R LGV + L G+ ++ AL ++G+K
Sbjct: 423 IEGVDEGTAEELQTRAREHLEAANKAALENARALGVEDSLIEFEGLTPQMVEALAKDGVK 482
Query: 458 TMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517
T+ED A C+ +L G + G K DG L ++ ++M++ AR +GW++ ++
Sbjct: 483 TLEDFATCADWELAGGWTTQNGQRVKDDGILEPFDVSLEEAQTMVMTARVMLGWVDPTEL 542
Query: 518 ADEEVQDA 525
+ +A
Sbjct: 543 ESADEAEA 550
>gi|99082750|ref|YP_614904.1| transcription elongation factor NusA [Ruegeria sp. TM1040]
gi|99039030|gb|ABF65642.1| NusA antitermination factor [Ruegeria sp. TM1040]
Length = 538
Score = 516 bits (1330), Expect = e-144, Method: Composition-based stats.
Identities = 275/525 (52%), Positives = 377/525 (71%), Gaps = 2/525 (0%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+ SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRV I+ +TG
Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVEAMEESLARAAKSRYGSEMDIRVSIDRKTGKA 62
Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+ R+ VVE+ +ENY ++++ A+ +G + D +PP++ GR+A QSAKQVI
Sbjct: 63 TFTRVRTVVEDEELENYQSELTVAQAKQYMEDPKVGDTIVDEVPPVEMGRIAAQSAKQVI 122
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178
+QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G+ +G++RR+E I RE+ RP
Sbjct: 123 LQKVREAERDRQYEEFKDRNGTIINGVVKREEYGNVIVDIGSGEGILRRNEKIGRESYRP 182
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
DR++ +I DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK
Sbjct: 183 NDRIRCFIKDVRREPRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K
Sbjct: 243 IAVVSYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VVLDE+ G+IEV+VP EQLSLAIGRRGQNVRLASQLT IDI+TEEE+S RQK+F R
Sbjct: 303 VVLDEEAGKIEVVVPDEQLSLAIGRRGQNVRLASQLTNLDIDIMTEEEESARRQKEFEAR 362
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
T FM+ +++DE A LLV+EGF ++EE+A V++ E+ I+G DE TA E+Q RAR+YLE
Sbjct: 363 TALFMETLDLDEFFAQLLVSEGFTNLEEVAYVELDELLVIDGVDEGTAEELQARARDYLE 422
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
R +GV + L G+ ++ AL ++ +K++ED A C+ +L G
Sbjct: 423 AKAKAALDNARSMGVEDSLIDFDGLTPQMVEALAKDDVKSLEDFATCADWELAGGWTTVN 482
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523
G K +G L ++ +++++ AR +GW++ ++ +
Sbjct: 483 GERVKDEGILEPFDVSLEEAQNLVMTARIMLGWVDPAELESDADD 527
>gi|307942744|ref|ZP_07658089.1| transcription elongation protein NusA [Roseibium sp. TrichSKD4]
gi|307773540|gb|EFO32756.1| transcription elongation protein NusA [Roseibium sp. TrichSKD4]
Length = 559
Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats.
Identities = 332/522 (63%), Positives = 425/522 (81%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
+SANRLELLQIADAVA EKSIDR +V+S M D+IQKAARS YGT +++R EINP+TGDI
Sbjct: 3 ISANRLELLQIADAVAREKSIDRTIVISAMEDAIQKAARSRYGTETEVRAEINPKTGDIR 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RLL+VVE VEN + +I+++ AR R+P +G ++DPLPP+DFGR+A QSAKQVI+QK
Sbjct: 63 LQRLLQVVEVVENVSTEIAVEDARQRNPEAALGDFIADPLPPLDFGRIAAQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQY E+KD+VGE+I+G VKR EYGNVIVDLG ++ ++RRDE I RE R GDR
Sbjct: 123 VREAERDRQYDEYKDRVGEVINGVVKRAEYGNVIVDLGRAEAIVRRDELIPREIFRTGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+++YI+DVRREQRGPQ+ LSRTHPQFM KLF EVPEIY+G+++++ V+RDPGSRAK+AV
Sbjct: 183 IRAYIHDVRREQRGPQIFLSRTHPQFMAKLFTSEVPEIYDGVIEIRTVARDPGSRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D ATF++NAL+PA V KVVL
Sbjct: 243 ISKDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWNEDPATFIVNALQPAEVAKVVL 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+Q
Sbjct: 303 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWAIDIMTEQEESDRRQKEFVERSQL 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM A+NVDE++ LL EGF VEE+A V++ EI+ IEGFD+ETA EIQ RAR+YLE ++
Sbjct: 363 FMDALNVDEMVGQLLATEGFTSVEEVAYVELDEISMIEGFDDETAEEIQARARDYLEELE 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
L + +ELGVS++L SI G+ + VALG++ +K+MEDLAGC+ DDL+GW+E K G
Sbjct: 423 AKLDAERQELGVSDDLRSIDGLTLAMMVALGKDDVKSMEDLAGCAADDLVGWTERKDGET 482
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523
++++G LS+ + + E+M++ AR GWI +E++A + +
Sbjct: 483 KRYEGALSAFDLSRAEAEAMVMAARVAAGWITEEELAAQNAE 524
>gi|89067479|ref|ZP_01154992.1| transcription elongation factor NusA [Oceanicola granulosus
HTCC2516]
gi|89047048|gb|EAR53102.1| transcription elongation factor NusA [Oceanicola granulosus
HTCC2516]
Length = 542
Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats.
Identities = 283/526 (53%), Positives = 377/526 (71%), Gaps = 2/526 (0%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+ SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ TG
Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVEAMEESLARAAKSRYGAEMDIRVSIDRRTGRA 62
Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+ R+ VVE+ +ENY +++++ A+ +G + +PP++ GR+A QSAKQVI
Sbjct: 63 TFTRVRTVVEDEELENYQAELTVEQAKQYLDDPKVGDQYIEEIPPVELGRIAAQSAKQVI 122
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178
+QKVREAERD+QY EFKD+ G II+ VKR EYGNVIVD+G + V+RR+E I RE+ RP
Sbjct: 123 LQKVREAERDKQYEEFKDRAGTIINALVKREEYGNVIVDVGAGEAVLRRNEKIGRESYRP 182
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
GDR++ YI DVRREQRGPQ+ LSRT P+FM +LF MEVPEIY GI+++KAV+RDPGSRAK
Sbjct: 183 GDRIRCYIKDVRREQRGPQIFLSRTAPEFMAELFKMEVPEIYEGIIEIKAVARDPGSRAK 242
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+ V S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K
Sbjct: 243 IGVVSYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDMPTFLVNALQPAEVSK 302
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VVLDED RIEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEEE+S RQ +F ER
Sbjct: 303 VVLDEDAERIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEEESKRRQAEFEER 362
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
T+ FM +++DE A LLV+EGF ++EE+A V+ E+ I+G DE TA E+Q RAR+ L+
Sbjct: 363 TKLFMDTLDLDEFFAQLLVSEGFTNLEEVAYVEQDELLVIDGVDEGTAQELQARARDVLD 422
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ +K RELGV + L + G+ + +AL E+G+KT+ED A C+ +L G
Sbjct: 423 EQNRVALEKARELGVEDSLVNFEGLTPAMVLALAEDGVKTLEDFATCADWELAGGWTTVN 482
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524
G K DG L ++ + M++ AR +GW++ + + E +
Sbjct: 483 GERVKDDGVLEKFDVSLEEAQDMVMTARVLLGWVDPDDLMPEAAAE 528
>gi|163733005|ref|ZP_02140449.1| transcription elongation factor NusA [Roseobacter litoralis Och
149]
gi|161393540|gb|EDQ17865.1| transcription elongation factor NusA [Roseobacter litoralis Och
149]
Length = 538
Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats.
Identities = 275/522 (52%), Positives = 377/522 (72%), Gaps = 2/522 (0%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+ SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG
Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVEAMEESLARAAKSRYGAEMDIRVHIDRKTGKA 62
Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+ R+ VVE+ +ENY + +++ A+ + ++G + + +PP++ GR+A QSAKQVI
Sbjct: 63 TFTRVRTVVEDELLENYQAEFTVEQAKQYMENPEVGQQLIEEVPPVEMGRIAAQSAKQVI 122
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178
+QKVREAERDRQ+ EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP
Sbjct: 123 LQKVREAERDRQFEEFKDRAGSIINGLVKREEYGNVIVDVGAGEAILRRNEKIGRESYRP 182
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
DR++ YI DVRREQRGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK
Sbjct: 183 NDRIRVYIKDVRREQRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K
Sbjct: 243 IAVISYDNSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEE++S RQ +F R
Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEQESARRQAEFELR 362
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
TQ F+ +++DE A LLV+EGF +EE+A V++ E+ I+G D +TA E+Q RAR+ LE
Sbjct: 363 TQLFVDNLDLDEFFAQLLVSEGFTSLEEVAYVEVDELLVIDGVDADTANELQARARDVLE 422
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ + R LGV + L G+ ++ AL ++ +KT+ED A C+ +L G
Sbjct: 423 AQNKAAIESARALGVEDSLIEFEGLTPQMIEALAKDDVKTLEDFATCADWELAGGWTTVD 482
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADE 520
G K DG L ++ + +I+ AR +GW++ + +
Sbjct: 483 GERSKDDGVLEPFEMTLEEAQDLIMTARVMLGWVDPADLEPD 524
>gi|163737947|ref|ZP_02145363.1| transcription elongation factor NusA [Phaeobacter gallaeciensis
BS107]
gi|163742658|ref|ZP_02150044.1| transcription elongation factor NusA [Phaeobacter gallaeciensis
2.10]
gi|161384243|gb|EDQ08626.1| transcription elongation factor NusA [Phaeobacter gallaeciensis
2.10]
gi|161388563|gb|EDQ12916.1| transcription elongation factor NusA [Phaeobacter gallaeciensis
BS107]
Length = 541
Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats.
Identities = 279/527 (52%), Positives = 379/527 (71%), Gaps = 2/527 (0%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+ SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRV I+ +TG
Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVDAMEESLARAAKSRYGSEMDIRVSIDRKTGRA 62
Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+ R+ VVE+ +ENY +++++ A+ +G V + +PP++ GR+A QSAKQVI
Sbjct: 63 TFTRVRTVVEDDALENYQAELTVEQAKQYMADPSVGDVFVEEVPPVEMGRIAAQSAKQVI 122
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178
+QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP
Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGLVKREEYGNVIVDVGAGEAILRRNEKIGRESYRP 182
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
DR++ +I DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+G++++KAV+RDPGSRAK
Sbjct: 183 NDRIRCFIKDVRREPRGPQIFLSRTAPEFMAELFKMEVPEIYDGVIEIKAVARDPGSRAK 242
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K
Sbjct: 243 IAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLT IDI+TEEE+S RQK+F R
Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTALDIDIMTEEEESARRQKEFEAR 362
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
T+ FM+ +++DE A LLV+EGF ++EE+A V++ E+ I+G DE TA E+Q RA +YLE
Sbjct: 363 TKLFMETLDLDEFFAQLLVSEGFTNLEEVAYVELDELLVIDGVDEGTAQELQARAADYLE 422
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
R LGV + L G+ ++ AL ++GIKT+ED A C+ +L G
Sbjct: 423 AQAKAAIDAARALGVEDSLIDFDGLTPQMVEALAKDGIKTLEDFATCADWELAGGWTTNK 482
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525
G K DG L + +++++ AR +GW++ ++ + DA
Sbjct: 483 GERVKDDGILEPFDVSLEDAQTLVMTARVLLGWVDPTELEADAEDDA 529
>gi|83953120|ref|ZP_00961842.1| transcription elongation factor NusA [Sulfitobacter sp. NAS-14.1]
gi|83842088|gb|EAP81256.1| transcription elongation factor NusA [Sulfitobacter sp. NAS-14.1]
Length = 546
Score = 514 bits (1325), Expect = e-143, Method: Composition-based stats.
Identities = 277/527 (52%), Positives = 381/527 (72%), Gaps = 2/527 (0%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+ SAN+LELLQ A+AVA EK ID ++V+ M +S+ +AA+S YG DIRV I+ +TG
Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPNLVVEAMEESLARAAKSRYGAEMDIRVSIDRKTGRA 62
Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+ R+ VV +E+ENY + +++ A+ + ++G S+ +PP++ GR+A QSAKQVI
Sbjct: 63 TFTRVRTVVADDELENYQAEFTVEQAKQYMANPEVGQEFSEEVPPVEMGRIAAQSAKQVI 122
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178
+QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP
Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGLVKREEYGNVIVDVGAGEAILRRNEKIGRESYRP 182
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
DR++ YI DVRREQRGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK
Sbjct: 183 NDRIRVYIKDVRREQRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K
Sbjct: 243 IAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEE++S RQ +F R
Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEQESQRRQAEFELR 362
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
T+ FM +++DE A LLV+EGF ++EE+A V++ E+ I+G DE+TA E+Q RAR+ +E
Sbjct: 363 TKLFMDNLDLDEFFAQLLVSEGFTNLEEVAYVEVDELLVIDGVDEDTASELQARARDVIE 422
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ R LGV + L G+ ++ AL ++ +KT+ED A C+ +L G
Sbjct: 423 AQNKAALDAARALGVDDTLIEFDGLTPQMIEALAKDDVKTLEDFATCADWELAGGWTTVN 482
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525
G K +G L + + +I+ AR +GW++ ++ ++V +
Sbjct: 483 GERTKDEGTLEPFDLSLEDAQKLIMTARVLLGWVDPAELEADDVDEE 529
>gi|304392764|ref|ZP_07374704.1| transcription elongation protein NusA [Ahrensia sp. R2A130]
gi|303295394|gb|EFL89754.1| transcription elongation protein NusA [Ahrensia sp. R2A130]
Length = 553
Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats.
Identities = 317/518 (61%), Positives = 413/518 (79%), Gaps = 2/518 (0%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
V+ANRLEL+QIADAVA EKSIDR +VL MAD+I+KAA++ YG ++IR +IN +TG+I
Sbjct: 3 VAANRLELMQIADAVAREKSIDRKIVLDAMADAIEKAAKARYGLETNIRADINEKTGEIK 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RLL VVE+VE+ +I L A+ ++ + ++G + + LPPMDFGRVA QSAKQVI+QK
Sbjct: 63 LQRLLLVVEKVEDPDTEILLADAKHKNEAAELGVHIGELLPPMDFGRVAAQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VR+AERDRQ+ EF+++ GEII+GTVKRVEYGNVIVDLG ++ +IRRDE I RE R GDR
Sbjct: 123 VRDAERDRQFAEFENRTGEIINGTVKRVEYGNVIVDLGRAEAIIRRDELIPREMYRYGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++YIYDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+G+++++AV+RDPGSRAK+AV
Sbjct: 183 VRAYIYDVRREQRGPQIFLSRTHPQFMAKLFQMEVPEIYDGVIEIRAVARDPGSRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+DS IDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS ++A F++NAL+PA V KVVL
Sbjct: 243 ISNDSGIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSEEAAGFIVNALQPAEVAKVVL 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TEEE+S RQ +F+ T
Sbjct: 303 DEDKARIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDILTEEEESGRRQAEFSANTST 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F +A+NVDE++ LL +EGF+D+EE+A V+ E+A IEGFD++TA E+Q RA+E+LE +
Sbjct: 363 FTEALNVDEMVGQLLASEGFSDLEEVAYVEQDELAMIEGFDDDTAAELQARAKEFLEKKE 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENG--IKTMEDLAGCSVDDLLGWSENKGG 479
L K +ELGV+++L +PGI + + VALGE+ IK++ED AG DDL+G++E K G
Sbjct: 423 QGLDAKRKELGVADDLRQVPGITTAMMVALGESDEEIKSLEDFAGSVADDLIGYNERKDG 482
Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517
+ + G LS+ G + Q + MI+ AR + GW+ +E +
Sbjct: 483 ELIRHTGPLSTFGLSRVQADEMIMAARIEAGWVTEEDL 520
>gi|260431715|ref|ZP_05785686.1| transcription elongation factor NusA [Silicibacter lacuscaerulensis
ITI-1157]
gi|260415543|gb|EEX08802.1| transcription elongation factor NusA [Silicibacter lacuscaerulensis
ITI-1157]
Length = 560
Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats.
Identities = 279/542 (51%), Positives = 378/542 (69%), Gaps = 23/542 (4%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+ SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG
Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVEAMEESLARAAKSRYGAEMDIRVSIDRKTGRA 62
Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDP---------------------SIDIGGVV 97
+ R+ VV EE+ENY ++++ AR +G V+
Sbjct: 63 TFTRVRTVVDDEELENYQAEMTVDQARAYFEPSKDGRAVWLRDGQPIEDFSTGPQVGDVL 122
Query: 98 SDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVD 157
+ +PP++ GR+A QSAKQVI+QKVREAERDRQY +FKD+VG II+G VKR E+GNVIVD
Sbjct: 123 QEEVPPVEMGRIAAQSAKQVILQKVREAERDRQYEDFKDRVGTIINGAVKREEFGNVIVD 182
Query: 158 LGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVP 217
LG ++ V+RR++ I RE+ RP DRV++YI +VRRE RG Q+ LSRT P+FM +LF MEVP
Sbjct: 183 LGGAEAVLRRNDKIGRESYRPNDRVRAYIKEVRREPRGHQIFLSRTAPEFMAELFKMEVP 242
Query: 218 EIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIV 277
EIY+GI+++KAV+RDPGSRAK+AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+
Sbjct: 243 EIYDGIIEIKAVARDPGSRAKIAVISHDNSIDPVGACVGMRGSRVQAVVNELQGEKIDII 302
Query: 278 VWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337
W+ D TF++NAL+PA V+KVVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLTG
Sbjct: 303 PWNEDQPTFLVNALQPAEVSKVVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTGL 362
Query: 338 TIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIAS 397
IDI+TE E+S RQK+F RT+ FM ++++DE A LLVAEGF ++EE+A V++ E+
Sbjct: 363 DIDIMTEAEESARRQKEFEARTKLFMDSLDLDEFFAQLLVAEGFTNLEEVAYVELDELLV 422
Query: 398 IEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIK 457
I+G DE TA E+Q RAR+ +E R LG + L G+ ++ AL ++G+K
Sbjct: 423 IDGVDEGTAQELQARARDVIEAQAKAALDNARALGAEDSLIEFEGLTPQMVEALAKDGVK 482
Query: 458 TMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517
T+ED A C+ +L G G K DG L G ++ + +++ AR +GW++ ++
Sbjct: 483 TLEDFATCADWELAGGWTTVDGQRVKDDGILEPFGVTLEEAQDLVMTARVMLGWVDPAEL 542
Query: 518 AD 519
Sbjct: 543 EQ 544
>gi|254475265|ref|ZP_05088651.1| NusA antitermination factor [Ruegeria sp. R11]
gi|214029508|gb|EEB70343.1| NusA antitermination factor [Ruegeria sp. R11]
Length = 541
Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats.
Identities = 281/527 (53%), Positives = 380/527 (72%), Gaps = 2/527 (0%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+ SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRV I+ +TG
Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPSLVVDAMEESLARAAKSRYGSEMDIRVSIDRKTGRA 62
Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+ R+ VVE+ +ENY +++++ A+ +G V + +PP++ GR+A QSAKQVI
Sbjct: 63 TFTRVRTVVEDDALENYQAEMTVEQAKQYMADPSVGDVFVEEVPPVEMGRIAAQSAKQVI 122
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178
+QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP
Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGLVKREEYGNVIVDVGAGEAILRRNEKIGRESYRP 182
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
DR++ +I DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+G++++KAV+RDPGSRAK
Sbjct: 183 NDRIRCFIKDVRREPRGPQIFLSRTAPEFMAELFKMEVPEIYDGVIEIKAVARDPGSRAK 242
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K
Sbjct: 243 IAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLT IDI+TEEE+S RQK+F R
Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTNLDIDIMTEEEESARRQKEFEAR 362
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
TQ FM+ +++DE A LLV+EGF ++EE+A V++ E+ I+G DE TA E+Q RA +YLE
Sbjct: 363 TQLFMETLDLDEFFAQLLVSEGFTNLEEVAYVELDELLVIDGVDEGTAQELQARAADYLE 422
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
R LGV + L G+ ++ AL ++GIKT+ED A C+ +L G +
Sbjct: 423 AQAKAAIDAARALGVEDSLIDFDGLTPQMIEALAKDGIKTLEDFATCADWELAGGWTSNK 482
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525
G K DG L + +++++ AR +GW++ ++ E DA
Sbjct: 483 GERVKDDGILEPFDVSLEDAQNLVMTARVLLGWVDPAELEAEAEDDA 529
>gi|84514878|ref|ZP_01002241.1| transcription elongation factor NusA [Loktanella vestfoldensis
SKA53]
gi|84511037|gb|EAQ07491.1| transcription elongation factor NusA [Loktanella vestfoldensis
SKA53]
Length = 533
Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats.
Identities = 281/518 (54%), Positives = 371/518 (71%), Gaps = 2/518 (0%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
SAN+LELLQ A+AVA EK+I+ +V+ M +S+ +AA+S YG DIRV I+ +TG +
Sbjct: 4 TSANQLELLQTAEAVAREKNIEPGLVVEAMEESLARAAKSRYGAEMDIRVNIDRKTGRAT 63
Query: 62 LFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119
R+ VV + VENY + ++ A+D IG S+ +PP++ GR+A QSAKQVI+
Sbjct: 64 FTRVRTVVADDAVENYQAEFTVAQAKDYMTDPQIGQEYSEEVPPVELGRIAAQSAKQVIL 123
Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG 179
QKVREAERD+QY EFKD+ G II+ VKR EYGNVIVD+G+ + V+RR+E I RE RP
Sbjct: 124 QKVREAERDKQYEEFKDRAGTIINALVKREEYGNVIVDVGSGEAVLRRNEKIGREAYRPN 183
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
DR++ YI +VRREQRGPQ+ LSRT P+FM +LF MEVPEIY G++++KAV+RDPGSRAK+
Sbjct: 184 DRIRCYIKEVRREQRGPQIFLSRTAPEFMAELFKMEVPEIYEGVIEIKAVARDPGSRAKI 243
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA VTKV
Sbjct: 244 AVISYDSSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDMPTFLVNALQPAEVTKV 303
Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
VLDE+ G+IEV+VP EQLSLAIGRRGQNVRLAS LTG IDI+TEEE+S RQ +F RT
Sbjct: 304 VLDEEAGKIEVVVPDEQLSLAIGRRGQNVRLASMLTGLDIDILTEEEESKRRQAEFETRT 363
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+ FM +++DE A LLVAEGF ++EE+A V+ E+ IEG DE TA E+Q RAR+YLE
Sbjct: 364 KLFMDTLDLDEFFAQLLVAEGFTNLEEVAYVEQDELLVIEGVDEGTAGELQARARDYLEA 423
Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479
GV + L G+ ++ ALG++G+KT+ED A C+ +L G G
Sbjct: 424 QAKKAMDAAIATGVEQSLIDFEGLTPQMLEALGKDGVKTLEDFATCADWELAGGWTTVNG 483
Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517
K DG L ++ ++M++ AR +GW++ +++
Sbjct: 484 ERVKDDGVLEPFDVSLEEAQTMVMTARVMLGWVDPDEL 521
>gi|84500726|ref|ZP_00998975.1| transcription elongation factor NusA [Oceanicola batsensis
HTCC2597]
gi|84391679|gb|EAQ04011.1| transcription elongation factor NusA [Oceanicola batsensis
HTCC2597]
Length = 536
Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats.
Identities = 285/516 (55%), Positives = 376/516 (72%), Gaps = 2/516 (0%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+ SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG
Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVEAMEESLARAAKSRYGAEMDIRVSIDRKTGRA 62
Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+ R+ VVE+ +ENY +++++ AR +G ++ +PP+D GR+A QSAKQVI
Sbjct: 63 TFTRVRTVVEDEELENYQAEMTVEQARQYMADPQVGDTFTEEVPPVDMGRIAAQSAKQVI 122
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178
+QKVREAERDRQY EFKD+ G II+G VKR EYGN+IVD+G + ++RR+E I RE+ RP
Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGVVKREEYGNIIVDVGRGEAILRRNEKIGRESYRP 182
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
DR++ YI DVRREQRGPQ+ LSRT PQFM +LF MEVPEIY GI+++KAV+RDPGSRAK
Sbjct: 183 NDRIRCYIKDVRREQRGPQIFLSRTDPQFMAELFKMEVPEIYEGIIEIKAVARDPGSRAK 242
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA VTK
Sbjct: 243 IAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVTK 302
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VVLDE+ RIEV+VP+EQLSLAIGRRGQNVRLASQLT IDI+TEEE+S RQK+F ER
Sbjct: 303 VVLDEEAERIEVVVPEEQLSLAIGRRGQNVRLASQLTALDIDIMTEEEESARRQKEFEER 362
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
T+ F+ +++DE A LLV+EGF ++EE+A V+I E+ I+G DEETA E+Q RAR+ LE
Sbjct: 363 TKLFVDTLDLDEFFAQLLVSEGFTNLEEVAYVEIDELLVIDGVDEETANELQARARDVLE 422
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
++ RELG + L G+ ++ AL E+G+KT+ED A C+ +L G
Sbjct: 423 AQAKAAMERARELGAEDSLIEFEGLTPQMIQALAEDGVKTLEDFATCADWELAGGWTTVE 482
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
G K DG L ++ + M+++AR +GW++
Sbjct: 483 GERVKDDGLLEPFDVSLEEAQHMVMNARVMLGWVDP 518
>gi|254466388|ref|ZP_05079799.1| transcription termination factor NusA [Rhodobacterales bacterium
Y4I]
gi|206687296|gb|EDZ47778.1| transcription termination factor NusA [Rhodobacterales bacterium
Y4I]
Length = 538
Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats.
Identities = 284/516 (55%), Positives = 378/516 (73%), Gaps = 2/516 (0%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+ SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG
Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVIEAMEESLARAAKSRYGAEMDIRVSIDRKTGRA 62
Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+ R+ VV +E+ENY +++++ AR + ++G + +PP++ GR+A QSAKQVI
Sbjct: 63 TFTRVRTVVADDELENYQAEMTVEQARQYMANPEVGQTYVEEVPPVEMGRIAAQSAKQVI 122
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178
+QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP
Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGLVKREEYGNVIVDVGAGEAILRRNEKIGRESYRP 182
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
DRV+ YI DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK
Sbjct: 183 NDRVRCYIKDVRREPRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA VTK
Sbjct: 243 IAVVSYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVTK 302
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEEE+S RQK+F R
Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEEESARRQKEFEAR 362
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
T+ FM+ +++DE A LLV+EGF ++EE+A V++ E+ I+G DE TA E+Q RAR+YLE
Sbjct: 363 TKLFMETLDLDEFFAQLLVSEGFTNLEEVAYVELDELLVIDGVDEGTAEELQARARDYLE 422
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
RELG E L G+ ++ AL ++ +K++ED A C+ +L G + G
Sbjct: 423 AQAKAALDAARELGAEESLIQFEGLTPQMVEALAKDDVKSLEDFATCADWELAGGWTSNG 482
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
G K DG L G ++ + M++ AR +GW++
Sbjct: 483 GERVKDDGILEPFGVSLEEAQDMVMTARIMLGWVDP 518
>gi|163745072|ref|ZP_02152432.1| transcription elongation factor NusA [Oceanibulbus indolifex
HEL-45]
gi|161381890|gb|EDQ06299.1| transcription elongation factor NusA [Oceanibulbus indolifex
HEL-45]
Length = 542
Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats.
Identities = 279/526 (53%), Positives = 378/526 (71%), Gaps = 2/526 (0%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+ SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV+IN +TG
Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVEAMEESLARAAKSRYGAEMDIRVDINRKTGKA 62
Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+ R+ VV E++ENY + ++ A+ +G + +PP++ GR+A QSAKQVI
Sbjct: 63 TFTRVRTVVADEDLENYQAEFTVDQAKQYMAEPKVGDTYVEEVPPVEMGRIAAQSAKQVI 122
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178
+QKVREAERDRQ+ EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP
Sbjct: 123 LQKVREAERDRQFEEFKDRAGTIINGLVKREEYGNVIVDVGAGEAILRRNEKIGRESYRP 182
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
DR++ YI DVRREQRGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK
Sbjct: 183 NDRIRVYIKDVRREQRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K
Sbjct: 243 IAVISHDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEE++S RQ +F R
Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEQESQRRQAEFELR 362
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
T+ FM +++DE A LLV+EGF+++EE+A V++ E+ I+G DE+TA E+Q RAR+ LE
Sbjct: 363 TKLFMDNLDLDEFFAQLLVSEGFSNLEEVAYVEVDELLVIDGVDEDTAGELQARARDVLE 422
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ R LGV + L G+ ++ AL ++ +KT+ED A C+ +L G
Sbjct: 423 AQNKAALDNARALGVEDSLVEFEGLTPQMLEALAKDDVKTLEDFATCADWELAGGWTTVN 482
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524
G K DG L + ++MI+ AR +GW++ ++ + +D
Sbjct: 483 GERVKDDGALEPFEVSLEDAQAMIMTARVMLGWVDPTELEGDADED 528
>gi|259417192|ref|ZP_05741111.1| transcription elongation factor NusA [Silicibacter sp. TrichCH4B]
gi|259346098|gb|EEW57912.1| transcription elongation factor NusA [Silicibacter sp. TrichCH4B]
Length = 538
Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats.
Identities = 275/522 (52%), Positives = 379/522 (72%), Gaps = 2/522 (0%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+ SAN+LELLQ A+AVA EK ID ++V+ M +S+ +AA+S YG+ DIRV I+ +TG
Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPNLVVEAMEESLARAAKSRYGSEMDIRVSIDRKTGKA 62
Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+ R+ VVE+ +ENY ++++ A+ S +G + D +PP++ GR+A QSAKQVI
Sbjct: 63 TFTRVRTVVEDEELENYQSELTVAQAKQYMESPSVGDTIVDEVPPVEMGRIAAQSAKQVI 122
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178
+QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G+ +G++RR+E I RE+ RP
Sbjct: 123 LQKVREAERDRQYEEFKDRNGTIINGVVKREEYGNVIVDIGSGEGILRRNEKIGRESYRP 182
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
DR++ +I DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK
Sbjct: 183 NDRIRCFIKDVRREPRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K
Sbjct: 243 IAVVSYDNSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VVLDE+ G+IEV+VP EQLSLAIGRRGQNVRLASQLT IDI+TEEE+S RQK+F R
Sbjct: 303 VVLDEEAGKIEVVVPDEQLSLAIGRRGQNVRLASQLTNLDIDIMTEEEESARRQKEFEAR 362
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
T FM+ +++DE A LLV+EGF ++EE+A V++ E+ I+G DE TA E+Q RAR+YLE
Sbjct: 363 TALFMETLDLDEFFAQLLVSEGFTNLEEVAYVELDELLVIDGVDEGTAEELQARARDYLE 422
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
R +G + L G+ ++ AL ++ +K++ED A C+ +L G
Sbjct: 423 AQAKAALDNARSMGAEDSLIDFEGLTPQMVEALAKDDVKSLEDFATCADWELAGGWTTVN 482
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADE 520
G K +G L ++ +++++ AR +GW++ ++ +
Sbjct: 483 GERVKDEGILEPFDMSLEEAQNLVMTARIMLGWVDPAELESD 524
>gi|254486422|ref|ZP_05099627.1| transcription termination factor NusA [Roseobacter sp. GAI101]
gi|214043291|gb|EEB83929.1| transcription termination factor NusA [Roseobacter sp. GAI101]
Length = 537
Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats.
Identities = 279/519 (53%), Positives = 378/519 (72%), Gaps = 2/519 (0%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+ SAN+LELLQ A+AVA EK ID ++V+ M +S+ +AA+S YG DIRV I+ +TG
Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPNLVVEAMEESLARAAKSRYGAEMDIRVSIDRKTGRA 62
Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+ R+ VV +E+ENY + +++ A+ + +IG S+ +PP++ GR+A QSAKQVI
Sbjct: 63 TFTRVRTVVADDELENYQAEFTVEQAKQYMANPEIGQEFSEEVPPVEMGRIAAQSAKQVI 122
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178
+QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP
Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGLVKREEYGNVIVDVGAGEAILRRNEKIGRESYRP 182
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
DR++ YI DVRREQRGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK
Sbjct: 183 NDRIRVYIKDVRREQRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K
Sbjct: 243 IAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLTG TIDI+TEE++S RQ +F R
Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTGLTIDIMTEEQESARRQAEFELR 362
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
T+ FM +++DE A LLV+EGF ++EE+A V++ E+ I+G DE TA E+Q RAR+ LE
Sbjct: 363 TKLFMDNLDLDEFFAQLLVSEGFTNLEEVAYVEVDELLVIDGVDEATAGELQARARDVLE 422
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ R LGV + L G+ ++ AL ++ +KT+ED A C+ +L G
Sbjct: 423 AKNKAALDAARALGVDDTLIEFDGLTPQMIEALAKDDVKTLEDFATCADWELAGGWTTVD 482
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517
G K +G L ++ + +I+ AR +GW++ ++
Sbjct: 483 GVRTKDEGTLEPFEMTLEEAQHLIMTARVLLGWVDPAEL 521
>gi|86136807|ref|ZP_01055385.1| transcription elongation factor NusA [Roseobacter sp. MED193]
gi|85826131|gb|EAQ46328.1| transcription elongation factor NusA [Roseobacter sp. MED193]
Length = 541
Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats.
Identities = 276/524 (52%), Positives = 377/524 (71%), Gaps = 2/524 (0%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+ SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRV I+ +TG
Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVDAMEESLARAAKSRYGSEMDIRVSIDRKTGKA 62
Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+ R+ VVE+ +ENY +++++ A+ + +G + +PP++ GR+A QSAKQVI
Sbjct: 63 TFTRVRSVVEDEALENYQAEMTVEQAKQYMANPAVGDTFVEEVPPVEMGRIAAQSAKQVI 122
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178
+Q+VREAERDRQ+ EF+D+ G II+ VKR EYGNVIVD+G +G++RR+E I RE+ RP
Sbjct: 123 LQRVREAERDRQFEEFQDRAGTIINALVKREEYGNVIVDVGAGEGILRRNEKIGRESYRP 182
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
DR++ YI DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+Q+KAV+RDPGSRAK
Sbjct: 183 NDRIRCYIKDVRREPRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIQIKAVARDPGSRAK 242
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV S+D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K
Sbjct: 243 IAVISNDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNDDQPTFLVNALQPAEVSK 302
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEEE+S RQK+F R
Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEEESARRQKEFEAR 362
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
T FM+ +++DE A LLV+EGF ++EE+A V++ E+ I+G D+ TA E+Q RAR++LE
Sbjct: 363 TGLFMETLDLDEFFAQLLVSEGFTNLEEVAYVELDELTVIDGVDDGTAEELQARARDFLE 422
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
R LG + L G+ + AL ++ I T+ED A C+ +L G N
Sbjct: 423 AKAKAAIDAARALGAEDSLIQFDGLTPPMVEALAKDEILTLEDFATCADWELAGGWTNDN 482
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEV 522
G K DG L G ++ + +++ AR +GW++ + + E
Sbjct: 483 GERIKDDGILEPFGMSLEEAQELVMTARVMLGWVDPDDLIGAED 526
>gi|149912925|ref|ZP_01901459.1| transcription elongation factor NusA [Roseobacter sp. AzwK-3b]
gi|149813331|gb|EDM73157.1| transcription elongation factor NusA [Roseobacter sp. AzwK-3b]
Length = 540
Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats.
Identities = 283/525 (53%), Positives = 382/525 (72%), Gaps = 2/525 (0%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+ SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG
Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVEAMEESLARAAKSRYGAEMDIRVSIDRKTGKA 62
Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+ R+ VV +E+ENY ++++ A+ IG + +PP+D GR+A QSAKQVI
Sbjct: 63 NFTRVRTVVADDELENYQAEMTVDQAKQYLDDPKIGDEFIEEIPPVDLGRIAAQSAKQVI 122
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178
+QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP
Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGVVKREEYGNVIVDVGRGEAILRRNEKIGRESYRP 182
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
GDRV++YI DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK
Sbjct: 183 GDRVRAYIKDVRREARGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K
Sbjct: 243 IAVISYDNSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VVLDE+ RIEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TE EDS RQK+F ER
Sbjct: 303 VVLDEEAERIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEAEDSERRQKEFEER 362
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
T+ F+ +++DE A LLV+EGF ++EE+A V++ E+ I+G D++TA E+Q RAR+ L+
Sbjct: 363 TKLFVDTLDLDEFFAQLLVSEGFTNLEEVAYVELDELLVIDGVDQDTANELQARARDVLD 422
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+K RELG + L G+ ++ VAL E+G+KT+ED A C+ +L G
Sbjct: 423 AQAREAMEKARELGAEDSLIEFEGLTPQMIVALAEDGVKTLEDFATCADWELAGGWTTVD 482
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523
G K +G L ++ ++M++ AR +GW++ ++ + +
Sbjct: 483 GQRVKDEGVLEPFEVSLEEAQNMVMTARVMLGWVDPTELEPDLEE 527
>gi|83942070|ref|ZP_00954532.1| transcription elongation factor NusA [Sulfitobacter sp. EE-36]
gi|83847890|gb|EAP85765.1| transcription elongation factor NusA [Sulfitobacter sp. EE-36]
Length = 542
Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats.
Identities = 277/527 (52%), Positives = 381/527 (72%), Gaps = 2/527 (0%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+ SAN+LELLQ A+AVA EK ID ++V+ M +S+ +AA+S YG DIRV I+ +TG
Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPNLVVEAMEESLARAAKSRYGAEMDIRVSIDRKTGRA 62
Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+ R+ VV +E+ENY + +++ A+ + ++G S+ +PP++ GR+A QSAKQVI
Sbjct: 63 TFTRVRTVVADDELENYQAEFTVEQAKQYMANPEVGQEFSEEVPPVEMGRIAAQSAKQVI 122
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178
+QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP
Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGLVKREEYGNVIVDVGAGEAILRRNEKIGRESYRP 182
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
DR++ YI DVRREQRGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK
Sbjct: 183 NDRIRVYIKDVRREQRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K
Sbjct: 243 IAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEE++S RQ +F R
Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEQESQRRQAEFELR 362
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
T+ FM +++DE A LLV+EGF ++EE+A V++ E+ I+G DE+TA E+Q RAR+ +E
Sbjct: 363 TKLFMDNLDLDEFFAQLLVSEGFTNLEEVAYVEVDELLVIDGVDEDTASELQARARDVIE 422
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ R LGV + L G+ ++ AL ++ +KT+ED A C+ +L G
Sbjct: 423 AQNKAALDAARALGVDDTLIEFDGLTPQMIEALAKDDVKTLEDFATCADWELAGGWTTVN 482
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525
G K +G L + + +I+ AR +GW++ ++ ++V +
Sbjct: 483 GERTKDEGTLEPFDLSLEDAQKLIMTARVLLGWVDPAELEADDVDEE 529
>gi|85705698|ref|ZP_01036795.1| transcription elongation factor NusA [Roseovarius sp. 217]
gi|85669688|gb|EAQ24552.1| transcription elongation factor NusA [Roseovarius sp. 217]
Length = 539
Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats.
Identities = 283/527 (53%), Positives = 380/527 (72%), Gaps = 2/527 (0%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+ SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRVEI+ +TG
Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPALVVEAMEESLARAAKSRYGSEMDIRVEIDRKTGRA 62
Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
R+ VV + +ENY +++++ A+ +G + +PP++ GR+A QSAKQVI
Sbjct: 63 KFTRVRTVVADDALENYQAEMTVEQAKQFLDDPKVGDAFVEEVPPVEMGRIAAQSAKQVI 122
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178
+QKVREAERDRQ+ EFKD+VG II+G VKR EYGNVIVD+G + ++RR+E I RE RP
Sbjct: 123 LQKVREAERDRQFEEFKDRVGTIINGVVKREEYGNVIVDVGRGEAILRRNEKIGREAYRP 182
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
DRV+ YI DVRREQRGPQ+ LSRT PQFM +LF MEVPEIY+GI+++KAV+RDPGSRAK
Sbjct: 183 NDRVRCYIKDVRREQRGPQIFLSRTDPQFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D ATF++NAL+PA V+K
Sbjct: 243 IAVISYDSSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQATFLVNALQPAEVSK 302
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VV+DED RIEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TE EDS RQK+F ER
Sbjct: 303 VVIDEDAQRIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEAEDSERRQKEFEER 362
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
T+ F+ +++DE A LLV+EGF ++EE+A V + E+ I+G DE+TA E+Q RAR+ +E
Sbjct: 363 TKLFVDTLDLDEFFAQLLVSEGFTNLEEVAYVDLDELLVIDGVDEDTAAELQARARDVIE 422
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
K RELGV + L + G+ ++ +AL E+ +K++ED A C+ +L G
Sbjct: 423 AQTKAALDKARELGVEDSLIAFEGLTPQMVLALAEDDVKSLEDFATCADWELAGGWTTVK 482
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525
G K +G L ++ + M++ AR +GW++ ++ +
Sbjct: 483 GERVKDEGILEKFDVSLEEAQHMVMTARVMLGWVDPTELETDADDSE 529
>gi|254418431|ref|ZP_05032155.1| NusA N-terminal domain family [Brevundimonas sp. BAL3]
gi|196184608|gb|EDX79584.1| NusA N-terminal domain family [Brevundimonas sp. BAL3]
Length = 587
Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats.
Identities = 296/533 (55%), Positives = 388/533 (72%), Gaps = 9/533 (1%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
+SANRLELLQIA+AVA EK+I+R+VV+ + ++IQK A+S YG DIR +I+ +TG+++
Sbjct: 6 ISANRLELLQIAEAVAREKNIEREVVIEAIEEAIQKGAKSRYGAHHDIRAKIDHKTGELA 65
Query: 62 LFRLLEVVEEVENYTCQ---------ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQ 112
L R + +VE+ + + LK A RDP +G + LPP +FGRV Q
Sbjct: 66 LTRHVTIVEDDWQPEDELEEFNDSAMVRLKDALKRDPEAVVGKEYVETLPPFEFGRVQTQ 125
Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETIS 172
A+QV+ KVREAER QY EFKD+VGEI++GTVKRVEYGN IVDLG +GV+RRD++I
Sbjct: 126 MARQVVTGKVREAERANQYEEFKDRVGEIVNGTVKRVEYGNTIVDLGRGEGVMRRDQSIP 185
Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRD 232
RE GDR+++YIYDVR E +GPQV+LSR HP FM KLF EVPE+Y+G+++++A +RD
Sbjct: 186 REVFNIGDRIRTYIYDVRPEAKGPQVMLSRAHPGFMAKLFAQEVPEVYDGVIEIRAAARD 245
Query: 233 PGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALR 292
GSRAK+AV S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+PD TF++NAL
Sbjct: 246 SGSRAKMAVLSNDSSIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWNPDEPTFIVNALA 305
Query: 293 PAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
PA V+KVVLDE+ GR+EV+VP EQLSLAIGRRGQNVRLASQLTGW IDIITE +DS RQ
Sbjct: 306 PAEVSKVVLDEEAGRVEVVVPDEQLSLAIGRRGQNVRLASQLTGWQIDIITESQDSERRQ 365
Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412
++F+ERT F +A++VDE+IA LLV EGFA +E+LA V E++ IEGFDEETA E+Q R
Sbjct: 366 REFSERTGLFQEALDVDEVIAQLLVTEGFATIEDLAYVDPYEVSEIEGFDEETAEELQAR 425
Query: 413 AREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG 472
AR++L+ L K ELGV + + +PG+ + VALGE G+KT+EDLA + D++ G
Sbjct: 426 ARDFLDRKAAELDAKRVELGVEDGVLQVPGVTLAMAVALGEGGVKTVEDLADLATDEIRG 485
Query: 473 WSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525
E K G K G L S ++ E +I+ AR GWI+ ++ ++A
Sbjct: 486 GYEVKNGERVKVPGVLESFNLAQEDAEMLILQARVAAGWIDASELPQPAPEEA 538
>gi|288959698|ref|YP_003450039.1| N utilization substance protein A [Azospirillum sp. B510]
gi|288912006|dbj|BAI73495.1| N utilization substance protein A [Azospirillum sp. B510]
Length = 510
Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats.
Identities = 290/519 (55%), Positives = 374/519 (72%), Gaps = 16/519 (3%)
Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66
+ELLQ+ADAVA EK+IDRD VL M +IQKA RS YG DIR I+ +TGDI L R L
Sbjct: 1 MELLQVADAVAREKNIDRDEVLEAMEQAIQKAGRSKYGHEHDIRARIDRKTGDIHLTRHL 60
Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
EVVE VEN Q++L A+ R +G + DPLPP+DFGR+A Q+AKQVI+QKVR+AE
Sbjct: 61 EVVETVENEATQVTLPYAQRRKAGAKLGDFLVDPLPPIDFGRIAAQTAKQVIVQKVRDAE 120
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
R RQ+ E+KD+ GEI++G VKRVEYGNV VDLG ++ ++RRDE + RE+ + GDRV++YI
Sbjct: 121 RKRQFNEYKDRNGEIVNGLVKRVEYGNVTVDLGRAEAILRRDELLPREHFKNGDRVRAYI 180
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
+DVR E RGPQ+ LSRTHP FM KLF EVPEIY+GI+++KAV+RDPGSRAK+AV S DS
Sbjct: 181 FDVREEPRGPQIFLSRTHPMFMAKLFAQEVPEIYDGIIEIKAVARDPGSRAKIAVLSHDS 240
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ ++ TFV+NAL PA V KVVLD+D
Sbjct: 241 SIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWNGEAPTFVVNALAPAEVAKVVLDDDNH 300
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
RIEV+VP +QLSLAIGRRGQNVRLAS LTGW IDI+TE+E+S R ++ + R+ FMQA+
Sbjct: 301 RIEVVVPDDQLSLAIGRRGQNVRLASMLTGWDIDILTEQEESERRSEEIHNRSALFMQAL 360
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426
+VD++IAHLLVAEGF VEE+A V+ E+A IEGFDE A E++ RA +L+ D
Sbjct: 361 DVDDVIAHLLVAEGFTSVEEIAFVETEELAEIEGFDESVADELKQRALAFLDVQDEQANL 420
Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486
+ ELGV + + + G ++ V LGENG+KT++DLA + D+L+
Sbjct: 421 RRLELGVEDIVAELTGFNATQLVKLGENGVKTLDDLADLAGDELVEI------------- 467
Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525
L G +++ ++I+ AR W E E+ A
Sbjct: 468 -LGKDGPSEEEANAIIMAARAH--WFEGEEQGATAEGSA 503
>gi|297717896|gb|ADI50091.1| transcription termination protein NusA [Candidatus Odyssella
thessalonicensis L13]
Length = 513
Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats.
Identities = 276/517 (53%), Positives = 377/517 (72%), Gaps = 16/517 (3%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
+S R E+L +A+AVA EK I+RD VL M +IQKAAR+ YG D+R +++ TGD++
Sbjct: 13 ISQPRHEILAVAEAVAREKGIERDEVLYAMEQAIQKAARAKYGFEKDVRAKVDKHTGDVN 72
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
++++L VVEEVE+ QISL A D S ++G + +PLPP++FGRVA QSA+QVIIQK
Sbjct: 73 IWKVLTVVEEVEDPLVQISLTDAHQIDKSYNVGDELVEPLPPIEFGRVAAQSARQVIIQK 132
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VR+AER QY EFKD+ +IISG VKRVE+GNVIVDLG ++G++RR++ I RE R GDR
Sbjct: 133 VRDAERAHQYAEFKDRANQIISGVVKRVEFGNVIVDLGRAEGILRREDLIQREVFRSGDR 192
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++Y+ DVR + RGP V LSRTHPQFM +LF EVPEIY+G++++K+V+RDPGSRAK+AV
Sbjct: 193 VRAYVSDVRPDARGPMVSLSRTHPQFMARLFESEVPEIYDGVIEIKSVARDPGSRAKIAV 252
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
+++D SIDPVG+CVG+RG RVQAVVTEL+ EKIDIV WS + ATFV+NAL PA V KVVL
Sbjct: 253 YTADPSIDPVGSCVGLRGVRVQAVVTELQGEKIDIVPWSSNPATFVVNALAPAEVIKVVL 312
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DE+ R++++V ++QLSLAIGRRGQNVRLASQLTGW IDI+TEE+++ R +++N RTQ
Sbjct: 313 DEEAHRVDMVVAEDQLSLAIGRRGQNVRLASQLTGWNIDIMTEEQEAKLRTEEYNTRTQL 372
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM A++VDE+IA LL A+GF VEEL+ + E+ +IEGFDE A EIQ RA ++E
Sbjct: 373 FMNALDVDEVIAQLLAADGFTTVEELSFAPLEELTAIEGFDEAIAQEIQSRALSFVEQRA 432
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+K ++LGVSEE+ I G+ +++ + L E+ IK+++D A S D+ L ++
Sbjct: 433 KASLEKAKDLGVSEEILEIDGMTAEMLLKLAEHNIKSLDDFADLSGDEFLEIAQEDQ--- 489
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518
+Q +MI+ AR W ++E A
Sbjct: 490 -----------LTLEQANAMIMAARAH--WFDEEPKA 513
>gi|126734454|ref|ZP_01750201.1| transcription termination factor NusA, putative [Roseobacter sp.
CCS2]
gi|126717320|gb|EBA14184.1| transcription termination factor NusA, putative [Roseobacter sp.
CCS2]
Length = 538
Score = 509 bits (1310), Expect = e-142, Method: Composition-based stats.
Identities = 279/518 (53%), Positives = 376/518 (72%), Gaps = 2/518 (0%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
SAN+LELLQ A+AVA EK+I+ +V+ M +S+ +AA+S YG DIRV I+ +TG +
Sbjct: 4 TSANQLELLQTAEAVAREKNIEPGLVVEAMEESLARAAKSRYGAEMDIRVAIDRKTGKAT 63
Query: 62 LFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119
R+ VVEE +ENY + ++ A++ ++G + +PP++ GR+A QSAKQVI+
Sbjct: 64 FTRVRTVVEEEELENYQAEFTVAQAKEYMEDPEVGQQFIEEVPPVELGRIAAQSAKQVIL 123
Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG 179
QKVREAERD+QY EFKD+ G II+ VKR EYGNVIVD+G + V+RR+E I RE RP
Sbjct: 124 QKVREAERDKQYEEFKDRAGTIINALVKREEYGNVIVDVGAGEAVLRRNEKIGREAYRPN 183
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
DR++ +I +VRREQRGPQ+ LSRT P+FM +LF MEVPEIY GI+++KAV+RDPGSRAK+
Sbjct: 184 DRIRCFIKEVRREQRGPQIFLSRTAPEFMAELFKMEVPEIYEGIIEIKAVARDPGSRAKI 243
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+KV
Sbjct: 244 AVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDMPTFLVNALQPAEVSKV 303
Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
VLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEEE+S RQ +F RT
Sbjct: 304 VLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEEESKRRQAEFELRT 363
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+ FM +++DE A LLV+EGF ++EE+A V++ E+ IEG DE+TA E+Q RAR+YLE
Sbjct: 364 KLFMDTLDLDEFFAQLLVSEGFTNLEEVAYVEVDELLVIEGVDEDTASELQARARDYLEA 423
Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479
+ R LGV + L + G+ + ALG++G+KT+ED A C+ +L G G
Sbjct: 424 KAKEAMEAARALGVEDSLANFEGLTPAMLEALGQDGVKTLEDFATCADWELAGGWTTVDG 483
Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517
K DG L ++ + M++ AR +GW++ +++
Sbjct: 484 ERVKDDGVLEPFEVSLEEAQDMVMTARVMLGWVDPDEL 521
>gi|304320433|ref|YP_003854076.1| transcription elongation factor NusA [Parvularcula bermudensis
HTCC2503]
gi|303299335|gb|ADM08934.1| transcription elongation factor NusA [Parvularcula bermudensis
HTCC2503]
Length = 525
Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats.
Identities = 312/510 (61%), Positives = 395/510 (77%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
V+AN++EL+QIA AVA EK ID +V+ M D++ +AARS YG +++R EI+P TG+
Sbjct: 3 VTANKIELIQIARAVAQEKMIDPSIVIEAMEDALSRAARSRYGAETNVRAEIDPRTGETR 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L+RL+EVVE VEN ++SLK A+ ++P +IG +SDPLPP+DFGRVA AKQVI QK
Sbjct: 63 LWRLMEVVESVENDAVEVSLKAAQKQNPEAEIGDFISDPLPPIDFGRVAALGAKQVINQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VR+AERD QY E+KD+VGEIISG +KR+EYG+VIVDLG + +IRRD+ I RE LR GDR
Sbjct: 123 VRDAERDNQYNEYKDRVGEIISGLIKRIEYGHVIVDLGKGEAIIRRDQQIPREPLRQGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++YI DVRRE RGPQ+ LSR HPQFM +LF EVPE+Y+G++++KAV+RDPGSRAK+ V
Sbjct: 183 VRAYIADVRREPRGPQIFLSRNHPQFMARLFEQEVPEVYDGVIEIKAVARDPGSRAKIGV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
+S+DSSIDPVGACVGMRGSRVQAVV EL EKIDIV WS D+ATFV+NAL PA V KVVL
Sbjct: 243 YSNDSSIDPVGACVGMRGSRVQAVVGELGGEKIDIVPWSEDTATFVVNALAPAEVAKVVL 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DE++ RIEV+VP EQLSLAIGRRGQNVRLASQLTG+ IDI+TEEE+S RQK++ ER++
Sbjct: 303 DEELERIEVVVPDEQLSLAIGRRGQNVRLASQLTGYEIDIMTEEEESAKRQKEYQERSEI 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM+ ++VD++IA+LLVAEGFA +EE+A V++ EIA IEGFD+ETA E+Q RA E+LE
Sbjct: 363 FMKVLDVDDMIANLLVAEGFARIEEIAYVEVEEIAEIEGFDDETAQELQARALEWLEREQ 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
L + RELGV + L I G+ K VAL E G+ T+ED AGC DDL GW+E G
Sbjct: 423 AELDARRRELGVEDALLEIEGMTLKWSVALAEEGVLTVEDFAGCVADDLTGWTERVDGEK 482
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGW 511
+ ++G L D E MI AR ++GW
Sbjct: 483 KHYEGMLEKFRVKPDLAEQMIAEARRQVGW 512
>gi|126738452|ref|ZP_01754157.1| transcription elongation factor NusA [Roseobacter sp. SK209-2-6]
gi|126720251|gb|EBA16957.1| transcription elongation factor NusA [Roseobacter sp. SK209-2-6]
Length = 539
Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats.
Identities = 288/531 (54%), Positives = 387/531 (72%), Gaps = 6/531 (1%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+ SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRV I+ +TG
Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVDAMEESLARAAKSRYGSEMDIRVTIDRKTGKA 62
Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+ R+ VV +E+ENY +++++ AR + ++G V S+ +PP++ GR+A QSAKQVI
Sbjct: 63 TFTRVRTVVADDELENYQAEMTVEQARQYMENPEVGDVFSEEVPPVEMGRIAAQSAKQVI 122
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178
+QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G +G++RR+E I RE+ RP
Sbjct: 123 LQKVREAERDRQYEEFKDRNGTIINGVVKREEYGNVIVDVGAGEGILRRNEKIGRESYRP 182
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
DR++ YI DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK
Sbjct: 183 NDRIRCYIKDVRREPRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K
Sbjct: 243 IAVISHDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLT IDI+TEEE+S RQK+F R
Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTALDIDIMTEEEESARRQKEFEAR 362
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
T FM+ +++DE A LLV+EGF ++EE+A V+I E+ I+G DE TA E+Q RAR+YLE
Sbjct: 363 TGLFMETLDLDEFFAQLLVSEGFTNLEEVAYVEIEELLVIDGVDEGTAEELQARARDYLE 422
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
R LG + L G+ ++ AL ++ +KT+ED A C+ +L G N G
Sbjct: 423 AQAKAAIDAARALGAEDSLIQFDGLTPQMVEALAKDDVKTLEDFATCADWELAGGWTNDG 482
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV----ADEEVQDA 525
G K DG L G ++ + +++ AR +GW++ E++ + E +DA
Sbjct: 483 GERIKDDGILEPFGMSLEEAQDLVMTARIMLGWVDPEELIGDSEEAEGEDA 533
>gi|254460407|ref|ZP_05073823.1| transcription termination factor NusA [Rhodobacterales bacterium
HTCC2083]
gi|206676996|gb|EDZ41483.1| transcription termination factor NusA [Rhodobacteraceae bacterium
HTCC2083]
Length = 537
Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats.
Identities = 286/527 (54%), Positives = 381/527 (72%), Gaps = 2/527 (0%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+ SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG
Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVIEAMEESLARAAKSRYGAEMDIRVAIDRKTGRA 62
Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+ R+ VVE+ +ENY + +++ A+ + ++G + +PP++ GR+A QSAKQVI
Sbjct: 63 TFTRVRTVVEDEELENYQAEFTVEQAKQYMENPEVGATFVEEVPPVEMGRIAAQSAKQVI 122
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178
+QKVREAERDRQ+ EF+D+ G II+G VKR EYGNVIVD+G +G++RR+E I RE+ RP
Sbjct: 123 LQKVREAERDRQFEEFQDRAGTIINGVVKREEYGNVIVDVGRGEGILRRNEKIGRESYRP 182
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
DR++ +I DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+ I+++KAV+RDPGSRAK
Sbjct: 183 NDRIRCFIKDVRREARGPQIFLSRTAPEFMAELFKMEVPEIYDNIIEIKAVARDPGSRAK 242
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K
Sbjct: 243 IAVISHDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VVLDE+ G+IEV+VP EQLSLAIGRRGQNVRLASQLT IDI+TEEE+S RQ +F R
Sbjct: 303 VVLDEEAGKIEVVVPDEQLSLAIGRRGQNVRLASQLTNLDIDIMTEEEESKRRQAEFELR 362
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
T+ FM+A++VDE A LLVAEGF ++EE+A V+I E+ I+G DE+TA E+Q RARE+LE
Sbjct: 363 TKLFMEALDVDEFFAQLLVAEGFTNLEEVAYVEIDELLVIDGVDEDTAGELQTRAREFLE 422
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
K RELG + L + GI ++ L E+G+KT+ED A C+ +L G
Sbjct: 423 AKAAAALAKARELGADDSLLTFEGITPQMAEVLAEDGVKTLEDFATCADWELAGGWTTVD 482
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525
G K DG L G ++ +SMI+ AR +GW++ ++ DA
Sbjct: 483 GERVKDDGLLEQFGMELEEAQSMIMTARVLLGWVDPAELEAAHDDDA 529
>gi|148259243|ref|YP_001233370.1| transcription elongation factor NusA [Acidiphilium cryptum JF-5]
gi|326402396|ref|YP_004282477.1| transcription elongation protein NusA [Acidiphilium multivorum
AIU301]
gi|146400924|gb|ABQ29451.1| NusA antitermination factor [Acidiphilium cryptum JF-5]
gi|325049257|dbj|BAJ79595.1| transcription elongation protein NusA [Acidiphilium multivorum
AIU301]
Length = 506
Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats.
Identities = 294/513 (57%), Positives = 372/513 (72%), Gaps = 16/513 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
R ELL +ADAVA EK IDR+ VL M +IQKA R+ YG DIR I+ +TGD+ L R
Sbjct: 9 RPELLLVADAVAREKQIDREEVLEAMEQAIQKAGRAKYGHEKDIRATIDRKTGDVRLSRW 68
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
E VE VEN QI + +AR P I++GG + DPLPP+DFGR+A Q+AKQVI+Q+VRE
Sbjct: 69 TEAVETVENEETQIPIHIARKFKPDIEVGGHLVDPLPPIDFGRIAAQTAKQVIVQRVREY 128
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER RQY E+KD+VGEII+G VKR EYGN++VDLG S+ ++RRDETI RENL GDRV+++
Sbjct: 129 ERKRQYDEYKDRVGEIITGVVKRTEYGNLMVDLGRSEALLRRDETIPRENLHNGDRVRAF 188
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
IYDVR E RGPQ+ LSRTHP F+ KLF EVPEIY GI+++KAV+RDPGSRAK+AV S D
Sbjct: 189 IYDVREEPRGPQIFLSRTHPGFLAKLFAQEVPEIYEGIIEIKAVARDPGSRAKMAVISRD 248
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
SSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSP+ ATFV+NAL PA V+KVVLDE+
Sbjct: 249 SSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPNPATFVVNALAPAEVSKVVLDEEA 308
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
G++EV+VP QLSLAIGRRGQNVRLASQLT W IDI+TE E+S RQ++F R+ F++A
Sbjct: 309 GKVEVVVPDTQLSLAIGRRGQNVRLASQLTRWDIDILTEAEESERRQEEFRRRSGLFVEA 368
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425
++VD++IA LLV EGF VE+LA + E+A+IEGFDE A E+Q RA LE L+
Sbjct: 369 LDVDDVIAGLLVTEGFEGVEDLAATPVEELAAIEGFDEGIAAELQRRAEVALERKATELE 428
Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485
K R LGV+++L + G+ + VALGE G+KT++DLA + D+L+
Sbjct: 429 DKRRALGVADDLAGLEGLSPAMLVALGEKGVKTLDDLADLASDELIEIVGADA------- 481
Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518
+D ++I+ AR W E E+ A
Sbjct: 482 -------MDEDAANAIIMAARAH--WFEGEEDA 505
>gi|255262084|ref|ZP_05341426.1| transcription elongation factor NusA [Thalassiobium sp. R2A62]
gi|255104419|gb|EET47093.1| transcription elongation factor NusA [Thalassiobium sp. R2A62]
Length = 538
Score = 506 bits (1304), Expect = e-141, Method: Composition-based stats.
Identities = 282/523 (53%), Positives = 374/523 (71%), Gaps = 2/523 (0%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+ SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG
Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPSLVIEAMEESLARAAKSRYGAEMDIRVSIDRKTGKA 62
Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+ R+ VVEE +ENY + +++ A+ ++G + +PP++ GR+A QSAKQVI
Sbjct: 63 TFTRVRTVVEEEELENYQAEFTVEQAKQYMEDPEVGQAFVEEVPPVEMGRIAAQSAKQVI 122
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178
+QKVREAERDRQY EFKDK G II+ VKR EYGNVIVD+G+ + ++RR+E I RE+ RP
Sbjct: 123 LQKVREAERDRQYEEFKDKAGTIINALVKREEYGNVIVDVGSGEAILRRNEKIGRESYRP 182
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
DR++ YI DVRREQRGPQ+ LSRT P+FM KLF MEVPEIY+ I+++KAV+RDPGSRAK
Sbjct: 183 NDRIRCYIKDVRREQRGPQIFLSRTAPEFMAKLFEMEVPEIYDNIIEIKAVARDPGSRAK 242
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K
Sbjct: 243 IAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDMPTFLVNALQPAEVSK 302
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VVLDE+ RIEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEEEDS RQ +F R
Sbjct: 303 VVLDEEAERIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEEDSKRRQAEFETR 362
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
T+ FM +++DE A LLV+EGF ++EE+A V++ E+ I+G DE TA E+Q RAR++LE
Sbjct: 363 TKLFMDTLDLDEFFAQLLVSEGFTNLEEVAYVEVEELLVIDGVDEGTAGELQARARDFLE 422
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ + R LGV L G+ ++ AL E+G+KT+ED A C+ +L G +
Sbjct: 423 AQNKKALENARALGVENSLVEFEGLTPQMVEALAEDGVKTLEDFATCADWELAGGWTTQD 482
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEE 521
G K DG L ++ + M++ AR +GW++ +
Sbjct: 483 GERIKDDGVLEKFEISLEEAQDMVMTARIMLGWVDPADLETAS 525
>gi|254510431|ref|ZP_05122498.1| transcription termination factor NusA [Rhodobacteraceae bacterium
KLH11]
gi|221534142|gb|EEE37130.1| transcription termination factor NusA [Rhodobacteraceae bacterium
KLH11]
Length = 537
Score = 506 bits (1304), Expect = e-141, Method: Composition-based stats.
Identities = 279/521 (53%), Positives = 378/521 (72%), Gaps = 2/521 (0%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+ SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG
Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVEAMEESLARAAKSRYGAEMDIRVSIDRKTGKA 62
Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+ R+ VVE+ +ENY +++++ A+ + ++G V + +PP++ GR+A QSAKQVI
Sbjct: 63 TFTRVRTVVEDEELENYQAEMTVEQAKQYMEAPEVGQVFIEEVPPVEMGRIAAQSAKQVI 122
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178
+QKVREAERDRQY EFKD+ G II+G VKR E+GNVIVDLG ++ V+RR++ I RE+ RP
Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGAVKREEFGNVIVDLGGAEAVLRRNDKIGRESYRP 182
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
DRV++YI +VRRE RG Q+ LSRT P+FM +LF MEVPEIY+GI++VKAV+RDPGSRAK
Sbjct: 183 NDRVRAYIKEVRREVRGHQIFLSRTAPEFMAELFKMEVPEIYDGIIEVKAVARDPGSRAK 242
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K
Sbjct: 243 IAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLT IDI+TE E+S RQK+F R
Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTNLDIDIMTEAEESARRQKEFEAR 362
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
TQ FM+ +++DE A LLV+EGF ++EE+A V++ E+ I+G DE TA E+Q RARE+LE
Sbjct: 363 TQLFMETLDLDEFFAQLLVSEGFTNLEEVAYVELDELLVIDGVDEGTAQELQTRAREFLE 422
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
R LGV + L G+ ++ AL ++ +KT+ED A C+ +L G
Sbjct: 423 AQAKAALDAARALGVEDSLIEFEGLTPQMVEALAKDDVKTLEDFATCADWELAGGWTTVD 482
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVAD 519
G K DG L G ++ + +++ AR +GW++ ++
Sbjct: 483 GERIKDDGVLEPFGVTLEEAQDLVMTARIMLGWVDPAELEQ 523
>gi|197106902|ref|YP_002132279.1| N utilization substance protein A [Phenylobacterium zucineum HLK1]
gi|196480322|gb|ACG79850.1| N utilization substance protein A [Phenylobacterium zucineum HLK1]
Length = 561
Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats.
Identities = 307/553 (55%), Positives = 395/553 (71%), Gaps = 28/553 (5%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
+SANRLELLQIA+AVA EK+ID+++V+ + ++IQK AR+ YG DIRV I+P+TG+ +
Sbjct: 6 ISANRLELLQIAEAVAREKAIDKEIVIEAIEEAIQKGARARYGAEHDIRVHIDPKTGETT 65
Query: 62 LFRLLEVVEE-----------------VENYTCQISLKVARDRDPSIDIGGVVSDPLPPM 104
+ R++ VV + +E I L A+ RD ++G V + LPP
Sbjct: 66 IKRVVTVVADDATFGGGVDPETGEELPIEEPPGIIRLAEAKRRDKDAEVGKVYEELLPPF 125
Query: 105 DFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV 164
+FGRV Q A+QV++ KVR+AER+RQY E+KD+VGEI++GTVKRVEYGNV+VDLG +G+
Sbjct: 126 EFGRVQTQMARQVVMGKVRDAERERQYEEYKDRVGEIVNGTVKRVEYGNVVVDLGRGEGI 185
Query: 165 IRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224
+RRD++I REN GDR++ YIYDVRRE +GPQ+LLSR H FM KLF EVPE+Y+G++
Sbjct: 186 MRRDQSIPRENFNIGDRIRCYIYDVRRETKGPQILLSRAHGGFMAKLFAQEVPEVYDGVI 245
Query: 225 QVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSA 284
+++AV+RDPGSRAK+AV S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D A
Sbjct: 246 EIRAVARDPGSRAKMAVVSNDSSIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWSQDDA 305
Query: 285 TFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344
TF++NAL PA V+KVV+DE+ R+EV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE
Sbjct: 306 TFIVNALAPAEVSKVVMDEEDERVEVVVPDEQLSLAIGRRGQNVRLASQLTGWQIDIMTE 365
Query: 345 EEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404
++S RQ++F ERT F +A++VDE+IA LLV EGFA VE++ V SEI++IEGFDE+
Sbjct: 366 SQESERRQREFTERTALFQEALDVDEVIAQLLVTEGFATVEDVGYVDPSEISAIEGFDED 425
Query: 405 TAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAG 464
TA EIQ RAREYLE K RELGV + L I GI + VALGE GIKT+EDLAG
Sbjct: 426 TAEEIQTRAREYLEKEAAEYDAKRRELGVEDGLLDIEGITLPMAVALGEGGIKTVEDLAG 485
Query: 465 CSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI-----------E 513
DDL GW E K G + G L + G E +I+ AR MGW+
Sbjct: 486 LVPDDLRGWFETKNGERVREPGILETFGLDAQDAELLIMRARIVMGWVEAPEEPEAEEPT 545
Query: 514 KEKVADEEVQDAS 526
E A+ E+ +
Sbjct: 546 DEDFAEAEMAGEA 558
>gi|23016102|ref|ZP_00055862.1| COG0195: Transcription elongation factor [Magnetospirillum
magnetotacticum MS-1]
Length = 502
Score = 504 bits (1299), Expect = e-140, Method: Composition-based stats.
Identities = 296/514 (57%), Positives = 375/514 (72%), Gaps = 16/514 (3%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+ + R ELLQ+ADAVA +K IDRD VL M +IQKA RS YG DIR I+ +TG+I
Sbjct: 4 IAALPRPELLQVADAVARDKGIDRDEVLEAMEQAIQKAGRSKYGHEHDIRAHIDRKTGEI 63
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
L R +EVVEEVEN Q +LK + P +G + DPLPP+DFGR+A Q+AKQVI+Q
Sbjct: 64 QLARYIEVVEEVENEATQQTLKQVLKKKPDAQVGDFLVDPLPPIDFGRIAAQTAKQVIVQ 123
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
KVR+AER RQ+ E+KD+VGEI +G VKRVE+GNVIVDLG ++ ++RRDE I RE R GD
Sbjct: 124 KVRDAERQRQFNEYKDRVGEISNGLVKRVEFGNVIVDLGRAEALLRRDELIPRETFRTGD 183
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
RV++YIYDVR+E RGPQ+ LSRTHP FM KLF EVPEIY+GI+++KAV+RDPGSRAK+A
Sbjct: 184 RVRAYIYDVRQEPRGPQIFLSRTHPIFMAKLFAQEVPEIYDGIIEIKAVARDPGSRAKIA 243
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+N L PA VTKVV
Sbjct: 244 VQSHDSSIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWSPDVATFVVNGLAPAEVTKVV 303
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
LDE+ GRIEV+VP +QLSLAIGRRGQNVRLASQLT W IDI+TE E+S R ++F R+
Sbjct: 304 LDEEAGRIEVVVPDDQLSLAIGRRGQNVRLASQLTQWNIDILTEAEESERRTEEFRSRSN 363
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
F+QA++VD++IAHLLV EGF+ VEE+A V +IA IEGFDE A E+Q RAR +L
Sbjct: 364 MFIQALDVDDVIAHLLVTEGFSSVEEVAYVPSEDIADIEGFDENVAEELQTRARNFLAEQ 423
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
D + +++GV++E+ +I G+ + V LG+ GIKT++DL + D+LL
Sbjct: 424 DERYDQMRKDMGVADEMAAIEGLAPSMLVKLGDKGIKTLDDLGDLAGDELLDI------- 476
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
L +D+ ++I+ AR W E+
Sbjct: 477 -------LGKDAMSEDEANAVIMAARAH--WFEE 501
>gi|114769758|ref|ZP_01447368.1| transcription elongation factor NusA [alpha proteobacterium
HTCC2255]
gi|114549463|gb|EAU52345.1| transcription elongation factor NusA [alpha proteobacterium
HTCC2255]
Length = 542
Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats.
Identities = 294/519 (56%), Positives = 386/519 (74%), Gaps = 2/519 (0%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+ SANRLELLQIAD+VA EK ID D+VL M +S KAA+S YG DIR I+ ++G++
Sbjct: 3 ITSANRLELLQIADSVAREKMIDPDLVLQAMEESYAKAAKSKYGAELDIRAFIDRKSGEL 62
Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+ R+ VVE E EN +++++ A+ +G ++ D LPPMDFGR+ QSAKQVI
Sbjct: 63 EMTRVRVVVEGTEAENMYTEMTVEEAKAHKEEPSVGDLIIDKLPPMDFGRIGAQSAKQVI 122
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178
+QKVREAERDRQY EFKD+ GEII+G VKRVEYGNVIVD+G + V RRD+ ++RE R
Sbjct: 123 LQKVREAERDRQYEEFKDRQGEIINGLVKRVEYGNVIVDVGRGEAVCRRDQLVNREMFRN 182
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
GDR++++I +VR E RGPQV LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK
Sbjct: 183 GDRIRAFIKEVRSEMRGPQVFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+ V S D+SIDPVGACVGMRGSRVQAVV EL EKIDI+ W+ D+ TF++NAL+PA VTK
Sbjct: 243 IGVISFDNSIDPVGACVGMRGSRVQAVVNELGGEKIDIIPWNEDAPTFLVNALQPAEVTK 302
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VVLDED RIEV+VP EQLSLAIGRRGQNVRLASQLTG IDI+TE ++S RQK+F ER
Sbjct: 303 VVLDEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGLDIDIMTETDESERRQKEFEER 362
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
+Q FM +NVDE++A LLV+EGF+ +EE+A V+ E+ IEGFD++T E+Q RARE LE
Sbjct: 363 SQLFMDTMNVDEVVAQLLVSEGFSSLEEVAYVETDELLMIEGFDQDTVDELQARARESLE 422
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
I+ + RELGV+++L G+ ++ VALG++ +K++ED A C+ +L G
Sbjct: 423 EINAKSIAEARELGVAQDLIDFEGLSPQMLVALGKDDVKSLEDFATCADWELAGGYTTVD 482
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517
G K DG L S + + MI+ AR ++GW+ +E++
Sbjct: 483 GERHKDDGVLESFEVNIQEAQDMIMRARLQIGWVTEEQL 521
>gi|163796764|ref|ZP_02190722.1| Transcription elongation factor [alpha proteobacterium BAL199]
gi|159178018|gb|EDP62565.1| Transcription elongation factor [alpha proteobacterium BAL199]
Length = 517
Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats.
Identities = 283/516 (54%), Positives = 375/516 (72%), Gaps = 16/516 (3%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+ + +LEL+Q+AD VA +K IDR+ VL M +IQKA RS YG DIR I+ TG+I
Sbjct: 3 IATQPKLELIQVADVVARDKGIDREEVLIAMEQAIQKAGRSKYGPDHDIRATIDRRTGEI 62
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
SL R VVEE+E+ QI+L A+ DP+++IG V+S+PLPP+DFGR+A Q+AKQVI+Q
Sbjct: 63 SLKRCTTVVEEIEDEISQITLAQAQKIDPALEIGSVISEPLPPIDFGRIAAQTAKQVIVQ 122
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
KVRE ER RQY E+KD+ GEII+G+VKRVEYGNV V++ ++ ++RRD + RE R GD
Sbjct: 123 KVREFERQRQYEEYKDRSGEIINGSVKRVEYGNVTVEIQRAEAILRRDRLLPRETFRQGD 182
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
R+++YI DVR E RGPQ+ LSRTHP+FM +LF EVPE+Y+GI+++KAV+RDPGSRAK+A
Sbjct: 183 RIRAYIEDVRSEPRGPQIFLSRTHPEFMRQLFRQEVPEVYDGIIEIKAVARDPGSRAKIA 242
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATFV+NAL PA V+KVV
Sbjct: 243 VISYDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSDDPATFVVNALAPAEVSKVV 302
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
L ED GRIEV+VP EQLSLAIGRRGQNVRLAS LTGW IDI+TE+E+S R+++F R+
Sbjct: 303 LHEDAGRIEVVVPDEQLSLAIGRRGQNVRLASMLTGWDIDILTEQEESDRRKEEFRVRSD 362
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
F+ A+++D++IA LLVAEGF VEE+A V + ++A IEGFD + A E+Q RA ++E
Sbjct: 363 TFITALDIDDVIAGLLVAEGFTSVEEIADVDLEDLAEIEGFDVDIAGELQMRALNHVEAE 422
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ L+ ELGV++E+ ++ + + VALGE G+KT++D A + D+LL
Sbjct: 423 RVRLEALRTELGVTDEVAALEALSPAMLVALGEKGVKTLDDFADLASDELLEI------- 475
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
L + +D +I+ AR W + E
Sbjct: 476 -------LPADSMDEDTANDLIMAARAH--WFDDED 502
>gi|83313172|ref|YP_423436.1| transcription elongation factor NusA [Magnetospirillum magneticum
AMB-1]
gi|82948013|dbj|BAE52877.1| Transcription elongation factor [Magnetospirillum magneticum AMB-1]
Length = 503
Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats.
Identities = 295/514 (57%), Positives = 375/514 (72%), Gaps = 16/514 (3%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+ + R ELLQ+ADAVA +K IDRD VL M +IQKA RS YG DIR I+ +TG+I
Sbjct: 4 IAALPRPELLQVADAVARDKGIDRDEVLEAMEQAIQKAGRSKYGHEHDIRAHIDRKTGEI 63
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
L R +EVVEEVEN Q +LK + P +G + DPLPP+DFGR+A Q+AKQVI+Q
Sbjct: 64 QLARYIEVVEEVENEATQQTLKQVLKKKPDAVVGDFLVDPLPPIDFGRIAAQTAKQVIVQ 123
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
KVR+AER RQ+ E+KD+VGEI +G VKRVE+GNVIVDLG ++ ++RRDE I RE R GD
Sbjct: 124 KVRDAERQRQFNEYKDRVGEISNGLVKRVEFGNVIVDLGRAEALLRRDELIPRETFRTGD 183
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
RV++YIYDVR+E RGPQ+ LSRTHP FM KLF EVPEIY+GI+++KAV+RDPGSRAK+A
Sbjct: 184 RVRAYIYDVRQEPRGPQIFLSRTHPIFMAKLFAQEVPEIYDGIIEIKAVARDPGSRAKIA 243
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+N L PA VTKVV
Sbjct: 244 VLSHDSSIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWSPDVATFVVNGLAPAEVTKVV 303
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
LDE+ GRIEV+VP +QLSLAIGRRGQNVRLASQLT W IDI+TE E+S R ++F R+
Sbjct: 304 LDEEAGRIEVVVPDDQLSLAIGRRGQNVRLASQLTQWNIDILTEAEESERRTEEFRSRSN 363
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
F+QA++VD++IAHLLV EGF+ VEE+A V +IA IEGFDE A E+Q RAR +L
Sbjct: 364 MFIQALDVDDVIAHLLVTEGFSSVEEVAYVPAEDIADIEGFDENVAEELQTRARNFLAEQ 423
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
D + +++GV++E+ +I G+ + V LG+ GIKT++DL + D+L+
Sbjct: 424 DERYDQMRKDMGVADEMAAIEGLAPSMLVKLGDKGIKTLDDLGDLAGDELIDI------- 476
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
L +D+ ++I+ AR W E+
Sbjct: 477 -------LGKDAMTEDEANAVIMAARAH--WFEE 501
>gi|254438705|ref|ZP_05052199.1| NusA N-terminal domain family [Octadecabacter antarcticus 307]
gi|198254151|gb|EDY78465.1| NusA N-terminal domain family [Octadecabacter antarcticus 307]
Length = 537
Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats.
Identities = 276/526 (52%), Positives = 376/526 (71%), Gaps = 2/526 (0%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+ SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRV I+ +TG
Sbjct: 3 ITSANQLELLQTAEAVAREKQIDPILVVEAMEESLARAAKSRYGSEMDIRVHIDRKTGKA 62
Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+ R+ VV E +ENY + +++ AR+ ++G + +PP++ GR+A QSAKQVI
Sbjct: 63 TFTRVRTVVAEAELENYQAEFTVEQAREYMEDPEVGQEFIEEVPPVEMGRIAAQSAKQVI 122
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178
+QKVREAERD+QY +FKD+ G II+ VKR EYGNVIVD+G + ++RR+E I RE+ RP
Sbjct: 123 LQKVREAERDKQYEDFKDRAGTIINAQVKREEYGNVIVDVGTGEAILRRNEKIGRESYRP 182
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
DR++ +I +VRREQRGPQ+ LSRT PQFM +LF MEVPEIY GI+++KAV+RDPGSRAK
Sbjct: 183 NDRIRCFIKEVRREQRGPQIFLSRTDPQFMAELFKMEVPEIYEGIIEIKAVARDPGSRAK 242
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K
Sbjct: 243 IAVISYDNSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDMPTFLVNALQPAEVSK 302
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VV DED RIEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEEE+S RQ +F R
Sbjct: 303 VVFDEDAERIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDILTEEEESKRRQAEFELR 362
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
T F++++++DE A LLV+EGF +EE+A V + E+ I+G D +TA E+Q RAR+ +E
Sbjct: 363 TGLFIESLDLDEFFAQLLVSEGFTTLEEVAYVDVDELLVIDGVDADTASELQARARDVIE 422
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ + RELGV + L G+ ++ AL +G+KT+ED A C+ +L G
Sbjct: 423 AKNNKAMENARELGVEDSLVEFEGLTPQMIEALANDGVKTLEDFATCADWELAGGWTVTD 482
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524
G K DG L ++ ++MI+ AR +GW++ + + + D
Sbjct: 483 GERTKDDGSLEPFEVSLEEAQTMIMTARVMLGWVDPDDLVKDAEDD 528
>gi|114799070|ref|YP_758846.1| transcription termination factor NusA [Hyphomonas neptunium ATCC
15444]
gi|114739244|gb|ABI77369.1| transcription termination factor NusA [Hyphomonas neptunium ATCC
15444]
Length = 592
Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats.
Identities = 289/528 (54%), Positives = 378/528 (71%), Gaps = 3/528 (0%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSANRLE+LQIA AVA EKSID+ +V+ M ++I+KAA++ YG DIR +I+P TG+ +
Sbjct: 6 VSANRLEILQIAKAVAEEKSIDQRIVIEAMQEAIEKAAKAKYGQEHDIRAKIDPATGEQT 65
Query: 62 LFRLLEVVEEV--ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119
L+R+ VV++ E+ Q+ L A+ D ++ G + + LPP DFGRVA Q+AKQVI
Sbjct: 66 LWRIQTVVDDETFEDEAKQLRLSEAKRIDATLVAGSELKEELPPFDFGRVAAQTAKQVIT 125
Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG 179
QKVR+AER+RQY E+KD+VGEI+SG VKRVEYG+VIVDLG ++G+IRR++ I REN +P
Sbjct: 126 QKVRDAERERQYNEYKDRVGEIVSGIVKRVEYGHVIVDLGRAEGIIRRNDGIPRENFQPN 185
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
DRV++Y+Y V RE +GPQ+ LSR P FM KLF EVPE+Y G++Q+KA +RDPGSRAK+
Sbjct: 186 DRVRAYLYKVSREVKGPQIFLSRAAPDFMRKLFAQEVPEVYEGVIQIKACARDPGSRAKI 245
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
V S+DSSIDPVGACVGMRG+RVQAVV EL EKIDI+ WS D+ATF++N L+PA V+KV
Sbjct: 246 GVISNDSSIDPVGACVGMRGARVQAVVGELSGEKIDIIPWSFDAATFIVNGLQPAEVSKV 305
Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
VLDED R+EV+V +Q LAIGRRGQNVRLASQLTGW ID+ITE DS QK+F ERT
Sbjct: 306 VLDEDERRVEVVVADDQFPLAIGRRGQNVRLASQLTGWQIDLITESADSERYQKEFQERT 365
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
FM+A++ DE +A LL +EGF VEE+A V + +IEGFD++ A E+Q RAREYL+
Sbjct: 366 DLFMKALDADETLAQLLASEGFESVEEIAFVAPEDFITIEGFDKDVAEELQERAREYLDR 425
Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSEN-KG 478
+ K RELGV++E+ + G+ V LGE G+KT+ED+AG DD+ G+ E
Sbjct: 426 VATENDAKRRELGVADEVMELEGVTPSFAVKLGEQGVKTVEDVAGLVPDDITGYREPGPD 485
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDAS 526
G +G L KD ++ AR GWIE E + + Q S
Sbjct: 486 GKPVWVEGILKKGEMRKDDANLFVMKARVAAGWIEPEAIEEMLAQQQS 533
>gi|161170254|gb|ABX59224.1| transcription elongation factor [uncultured marine bacterium
EB000_55B11]
gi|297183783|gb|ADI19906.1| hypothetical protein [uncultured marine bacterium EB000_55B11]
Length = 542
Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats.
Identities = 293/515 (56%), Positives = 382/515 (74%), Gaps = 2/515 (0%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+ SANRLELLQIAD+VA EK ID D+VL M +S KAA+S YG DIR I+ ++G++
Sbjct: 3 ITSANRLELLQIADSVAREKMIDPDLVLQAMEESYAKAAKSKYGAELDIRAFIDRKSGEL 62
Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+ R+ VVE E EN +++++ A+ +G ++ D LPPMDFGR+ QSAKQVI
Sbjct: 63 EMTRVRVVVEGTEAENMYTEMTVEEAKAHKEEPSVGDLIIDKLPPMDFGRIGAQSAKQVI 122
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178
+QKVREAERDRQY EFKD+ GEII+G VKRVEYGNVIVD+G + V RRD+ ++RE R
Sbjct: 123 LQKVREAERDRQYEEFKDRQGEIINGLVKRVEYGNVIVDVGRGEAVCRRDQLVNREMFRN 182
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
GDR++++I +VR E RGPQV LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK
Sbjct: 183 GDRIRAFIKEVRSEMRGPQVFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+ V S D+SIDPVGACVGMRGSRVQAVV EL EKIDI+ W+ D+ TF++NAL+PA VTK
Sbjct: 243 IGVISFDNSIDPVGACVGMRGSRVQAVVNELGGEKIDIIPWNEDAPTFLVNALQPAEVTK 302
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VVLDED RIEV+VP EQLSLAIGRRGQNVRLASQLTG IDI+TE ++S RQK+F ER
Sbjct: 303 VVLDEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGLDIDIMTETDESERRQKEFEER 362
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
+Q FM +NVDE++A LLV+EGF+ +EE+A V+ E+ IEGFD++T E+Q RARE LE
Sbjct: 363 SQLFMDTMNVDEVVAQLLVSEGFSSLEEVAYVETDELLMIEGFDQDTVDELQARARESLE 422
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
I+ + RELGV+++L G+ ++ VALG++ +K++ED A C+ +L G
Sbjct: 423 EINAKSIAEARELGVAQDLIDFEGLSPQMLVALGKDDVKSLEDFATCADWELAGGYTTVD 482
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
G K DG L S + + MI+ AR ++GW+
Sbjct: 483 GERHKDDGVLESFEVNIQEAQDMIMRARLQIGWVT 517
>gi|302381338|ref|YP_003817161.1| NusA antitermination factor [Brevundimonas subvibrioides ATCC
15264]
gi|302191966|gb|ADK99537.1| NusA antitermination factor [Brevundimonas subvibrioides ATCC
15264]
Length = 580
Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats.
Identities = 296/521 (56%), Positives = 382/521 (73%), Gaps = 9/521 (1%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
+SANRLELLQIA+AVA EK+IDR++V+ + ++IQK A+S YG DIR I+P+TG+++
Sbjct: 6 ISANRLELLQIANAVAQEKNIDREIVIEALEEAIQKGAKSRYGAHHDIRARIDPKTGELA 65
Query: 62 LFRLLEVVEEVENYTCQ---------ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQ 112
L R + +VE+ + + L A RDP +G + LPP +FGRV Q
Sbjct: 66 LTRHVTIVEDDWMPEDELEEFNDSAMVRLTDASKRDPEAVVGKEYVEDLPPFEFGRVQTQ 125
Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETIS 172
A+QVI KVREAER QY EFKD+VGEI++GTVKRVEYGN IVDLG +G++RRD++I
Sbjct: 126 MARQVITGKVREAERANQYEEFKDRVGEIVNGTVKRVEYGNTIVDLGRGEGIMRRDQSIP 185
Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRD 232
RE GDR+++YIYDVR E +GPQ++LSR HP FM KLF EVPE+Y+G+++++A +RD
Sbjct: 186 REVFNIGDRIRTYIYDVRPEAKGPQIMLSRAHPGFMAKLFAQEVPEVYDGVIEIRAAARD 245
Query: 233 PGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALR 292
GSRAK+AV S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+PD TF++NAL
Sbjct: 246 AGSRAKMAVLSNDSSIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWNPDEPTFIVNALA 305
Query: 293 PAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
PA V+KVVLDE+ R+EV+VP EQLSLAIGRRGQNVRLASQLTGW IDIITE +DS RQ
Sbjct: 306 PAEVSKVVLDEEADRVEVVVPDEQLSLAIGRRGQNVRLASQLTGWQIDIITESQDSERRQ 365
Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412
++F+ERT F +A++VDE+IA LLV EGFA VE+LA V E+A IEGFDE+TA E+Q R
Sbjct: 366 REFSERTTLFQEALDVDEVIAQLLVTEGFATVEDLAFVDNYEVAEIEGFDEDTAEELQAR 425
Query: 413 AREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG 472
AR++LE L K ELGV + + ++PG+ I VALGE G+KT+EDLA + D++ G
Sbjct: 426 ARDFLERQAAILDAKRVELGVEDGVMAVPGVTGAIAVALGEGGVKTVEDLADLATDEIRG 485
Query: 473 WSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
E K G K G L S ++ E +I+ AR GWI+
Sbjct: 486 GYEMKNGERVKVPGVLESFNLAQEDAELLILQARVAAGWID 526
>gi|258543556|ref|YP_003188989.1| transcription elongation factor NusA [Acetobacter pasteurianus IFO
3283-01]
gi|329113267|ref|ZP_08242050.1| Transcription elongation protein NusA [Acetobacter pomorum DM001]
gi|256634634|dbj|BAI00610.1| transcription termination/elongation factor NusA [Acetobacter
pasteurianus IFO 3283-01]
gi|256637690|dbj|BAI03659.1| transcription termination/elongation factor NusA [Acetobacter
pasteurianus IFO 3283-03]
gi|256640744|dbj|BAI06706.1| transcription termination/elongation factor NusA [Acetobacter
pasteurianus IFO 3283-07]
gi|256643799|dbj|BAI09754.1| transcription termination/elongation factor NusA [Acetobacter
pasteurianus IFO 3283-22]
gi|256646854|dbj|BAI12802.1| transcription termination/elongation factor NusA [Acetobacter
pasteurianus IFO 3283-26]
gi|256649907|dbj|BAI15848.1| transcription termination/elongation factor NusA [Acetobacter
pasteurianus IFO 3283-32]
gi|256652897|dbj|BAI18831.1| transcription termination/elongation factor NusA [Acetobacter
pasteurianus IFO 3283-01-42C]
gi|256655951|dbj|BAI21878.1| transcription termination/elongation factor NusA [Acetobacter
pasteurianus IFO 3283-12]
gi|326697408|gb|EGE49066.1| Transcription elongation protein NusA [Acetobacter pomorum DM001]
Length = 514
Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats.
Identities = 284/523 (54%), Positives = 371/523 (70%), Gaps = 16/523 (3%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
S +R ELL +ADAV+ EK I+R+ VL M +IQKA R+ YG DIR I+ +TGD+
Sbjct: 3 TSVSRPELLLVADAVSREKGIEREEVLEAMEQAIQKAGRAKYGHEKDIRATIDRKTGDVR 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L R EVV+EVEN QI+L +AR P I G + DPLPP+DFGR+A Q+AKQVI+Q+
Sbjct: 63 LSRWTEVVDEVENEDTQIALSIARKFRPEIQAGEYLIDPLPPIDFGRIAAQTAKQVIVQR 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VRE ER RQY EFKD+VGEI++GTVKR EYGN++V++G+++ ++RRDE I RE R DR
Sbjct: 123 VREYERKRQYNEFKDRVGEIVNGTVKRTEYGNLLVEIGSAEALLRRDELIPRETFRNSDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++YIYDVR E RGPQ+ LSRTHP F+ KLF EVPEIY+GI+++KAV+RDPGSRAK+AV
Sbjct: 183 VRAYIYDVRDEPRGPQIFLSRTHPAFLAKLFAQEVPEIYDGIIEIKAVARDPGSRAKMAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSP +ATFV+NAL PA V+KVV+
Sbjct: 243 ISRDASIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPQAATFVVNALAPAEVSKVVM 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DE+ GR+EV+VP EQLSLAIGRRGQNVRLASQLT W IDI+TE E+S RQ++F RT
Sbjct: 303 DEEAGRVEVVVPDEQLSLAIGRRGQNVRLASQLTRWDIDILTEAEESERRQEEFRRRTAL 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F++A++VD++IA LLV EGF +EELA E+ IEGFDE E+ RA YL +
Sbjct: 363 FVEALDVDDVIAGLLVTEGFHSIEELAFADPDELIGIEGFDESVVQELVQRAESYLVQQE 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
L + +ELGV +++ + +++ V LGE G+KT++DLA + D+L+
Sbjct: 423 QKLDDRRKELGVVDDIADMGVFTNQMLVTLGEKGVKTLDDLADLAGDELVEI-------- 474
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524
L + +D +I+ AR W E E + ++
Sbjct: 475 ------LGTDAIEEDAANEIIMAARAH--WFEDENQQPSDTKE 509
>gi|329847354|ref|ZP_08262382.1| transcription elongation protein nusA [Asticcacaulis biprosthecum
C19]
gi|328842417|gb|EGF91986.1| transcription elongation protein nusA [Asticcacaulis biprosthecum
C19]
Length = 564
Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats.
Identities = 303/513 (59%), Positives = 384/513 (74%), Gaps = 2/513 (0%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
+SANR ELLQIADAVA EK ID+ VV++ + ++IQKAARS YG DIRV I+P+ G+++
Sbjct: 6 ISANRQELLQIADAVAREKQIDKSVVIASIEEAIQKAARSRYGADHDIRVHIDPKWGEMT 65
Query: 62 LFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119
+ R + VV EEVEN Q SL A D +G + LPP + GRV Q A+QV+
Sbjct: 66 ITRHVTVVGDEEVENEYAQKSLSDALREDKEAFVGKEYVETLPPFELGRVQTQMARQVVT 125
Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG 179
KVREAER+RQY EFKD+VGEI++GTV+RVEYGNVIVDLG +G++RRD++I RE +
Sbjct: 126 HKVREAERERQYDEFKDRVGEIVNGTVRRVEYGNVIVDLGRGEGIMRRDQSIPREAFQVN 185
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
DR+++YIYDVRRE +GPQ++LSR H FM KLF EVPEIY+G++++K+V+RDPGSRAK+
Sbjct: 186 DRIRAYIYDVRRETKGPQIMLSRAHGGFMAKLFAQEVPEIYDGVIEIKSVARDPGSRAKM 245
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV S+D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATF++NAL PA VTKV
Sbjct: 246 AVLSNDNSIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWSPDEATFIVNALAPAEVTKV 305
Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
VLDE+ R+EV+VP EQLSLAIGRRGQNVRL SQLTGW +DIITE +DS RQK+F ERT
Sbjct: 306 VLDEEEDRVEVVVPDEQLSLAIGRRGQNVRLGSQLTGWQVDIITESQDSERRQKEFAERT 365
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
F +A++VDE+IA LLV EGF VE+LA V +EIA+IEGFDE+TA E+Q RAR++LE
Sbjct: 366 ALFQEALDVDEVIAQLLVTEGFTSVEDLAYVDENEIAAIEGFDEDTAQELQARARDFLER 425
Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479
K +ELGV + + + G+ + VALGE G+KT+EDLA + D+L G E KGG
Sbjct: 426 ETAEQDAKRKELGVEDGVLEVQGVTLPMAVALGEAGVKTVEDLADLATDELRGGFEQKGG 485
Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512
+ G L S ES+I++AR GWI
Sbjct: 486 ERVRVPGALESFTLSVPDAESLILNARVTAGWI 518
>gi|254452567|ref|ZP_05066004.1| transcription termination factor NusA [Octadecabacter antarcticus
238]
gi|198266973|gb|EDY91243.1| transcription termination factor NusA [Octadecabacter antarcticus
238]
Length = 538
Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats.
Identities = 274/523 (52%), Positives = 374/523 (71%), Gaps = 2/523 (0%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+ SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRV I+ +TG
Sbjct: 3 ITSANQLELLQTAEAVAREKQIDPILVVEAMEESLARAAKSRYGSEMDIRVHIDRKTGKA 62
Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+ R+ VV E +ENY + +++ A++ ++G + +PP++ GR+A QSAKQVI
Sbjct: 63 TFTRVRTVVAEAELENYQSEFTVEQAKEYMEDPEVGQEFIEEVPPVEMGRIAAQSAKQVI 122
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178
+QKVREAERD+QY +FKD+ G II+ VKR EYGNVIVD+G + ++RR+E I RE+ RP
Sbjct: 123 LQKVREAERDKQYEDFKDRAGTIINAQVKREEYGNVIVDVGTGEAILRRNEKIGRESYRP 182
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
DR++ YI +VRREQRGPQ+ LSRT PQFM +LF MEVPEIY GI+++KAV+RDPGSRAK
Sbjct: 183 NDRIRCYIKEVRREQRGPQIFLSRTDPQFMAELFKMEVPEIYEGIIEIKAVARDPGSRAK 242
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K
Sbjct: 243 IAVISYDNSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDMPTFLVNALQPAEVSK 302
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VV DED RIEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEEE+S RQ +F R
Sbjct: 303 VVFDEDAERIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDILTEEEESKRRQAEFELR 362
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
T F++++++DE A LLV+EGF +EE+A V++ E+ I+G D +TA E+Q RAR+ +E
Sbjct: 363 TGLFIESLDLDEFFAQLLVSEGFTTLEEVAYVEVEELLVIDGVDADTASELQARARDVIE 422
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ + R LGV + L G+ ++ AL +G+KT+ED A C+ +L G
Sbjct: 423 AKNNKAMENARALGVEDSLVEFEGLTPQMIEALANDGVKTLEDFATCADWELAGGWTVTD 482
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEE 521
G K DG L ++ + MI+ AR +GW++ + + +
Sbjct: 483 GERTKDDGSLEPFEVSLEEAQKMIMTARVMLGWVDPDDLVKDT 525
>gi|315497224|ref|YP_004086028.1| nusa antitermination factor [Asticcacaulis excentricus CB 48]
gi|315415236|gb|ADU11877.1| NusA antitermination factor [Asticcacaulis excentricus CB 48]
Length = 546
Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats.
Identities = 300/513 (58%), Positives = 385/513 (75%), Gaps = 2/513 (0%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
+SANR ELLQIADAVA EK ID+ VVL+ + +++QKAARS YG DIRV ++P TG+++
Sbjct: 6 ISANRQELLQIADAVAREKQIDKSVVLASIEEAVQKAARSRYGADHDIRVRVDPRTGEMT 65
Query: 62 LFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119
+ R + VV EE+EN Q L A D +G + LPP + GRV Q A+QV+
Sbjct: 66 ITRYVTVVPDEELENEYAQRGLTEALREDKDAFVGKTYDEVLPPFELGRVQSQMARQVVT 125
Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG 179
KVREAER+RQY EFKD+VGEI++GTVKRVEYGNVIVDLG +G++RRD++I RE +
Sbjct: 126 HKVREAERERQYDEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIMRRDQSIPREAFQVN 185
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
DR+++YIYDVRRE +GPQ++LSR H FM KLF EVPE+Y+G++++K+V+RDPGSRAK+
Sbjct: 186 DRIRAYIYDVRRETKGPQIMLSRAHGGFMAKLFAQEVPEVYDGVIEIKSVARDPGSRAKM 245
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV S+D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATF++NAL PA V+KV
Sbjct: 246 AVLSNDNSIDPVGACVGMRGSRVQAVVGELQGEKIDIIQWSPDEATFIVNALAPAEVSKV 305
Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
VLDE+ R+EV+VP EQLSLAIGRRGQNVRLASQLTGW +DIITE +DS RQK+F ERT
Sbjct: 306 VLDEEEDRVEVVVPDEQLSLAIGRRGQNVRLASQLTGWQVDIITESQDSERRQKEFAERT 365
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
F +A++ DE+IA LLV EGF+ VE+LA V EIA+IEGFDE+TA E+Q RAR+YLE
Sbjct: 366 ALFQEALDADEVIAQLLVTEGFSTVEDLAYVDQMEIAAIEGFDEDTAAELQARARDYLER 425
Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479
+ K ELGV +E+ ++PGI + VALGE G+KT+EDLA + D++ G E +G
Sbjct: 426 FEAEQNAKRVELGVEDEVLNVPGITLAMAVALGEAGVKTVEDLADLATDEVRGGFEQRGA 485
Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512
+ G L S E++I++AR GWI
Sbjct: 486 EKVRVPGALESFSLSVADAEALILNARIAAGWI 518
>gi|144897846|emb|CAM74710.1| transcription elongation protein [Magnetospirillum gryphiswaldense
MSR-1]
Length = 503
Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats.
Identities = 282/516 (54%), Positives = 368/516 (71%), Gaps = 17/516 (3%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+ + R ELLQ+ADAVA +K IDRD VL M +IQKA RS YG DIR I+ +TG+I
Sbjct: 4 IAALPRPELLQVADAVARDKGIDRDEVLEAMEQAIQKAGRSKYGHEHDIRAHIDRKTGEI 63
Query: 61 SLFRLLEVVEEVENY-TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119
L R +EVVEE Q+ L A ++P G + DPLPP+DFGR+A Q+AKQVI+
Sbjct: 64 QLARYIEVVEEEVENEATQLPLARALKKNPGAKAGDFLVDPLPPIDFGRIAAQTAKQVIV 123
Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG 179
QKVR+AER RQ+ E+KD+VGEI +G VKRVE+GNVIVDLG ++ ++RRDE I RE R G
Sbjct: 124 QKVRDAERQRQFNEYKDRVGEISNGLVKRVEFGNVIVDLGRAEALLRRDELIPRETFRTG 183
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
DRV++YI DVR+E RGPQ+ LSRT P FM KLF EVPEIY+GI+++KAV+RDPGSRAK+
Sbjct: 184 DRVRAYIADVRQEPRGPQIFLSRTSPIFMSKLFAQEVPEIYDGIIEIKAVARDPGSRAKI 243
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS + ATFV+NAL PA V+KV
Sbjct: 244 AVISHDSSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSGEYATFVVNALAPAEVSKV 303
Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
VLD++ +EV+VP +QLSLAIGRRGQNVRLASQLTGW+IDI+TE E+S R ++F R+
Sbjct: 304 VLDDETHTMEVVVPDDQLSLAIGRRGQNVRLASQLTGWSIDIMTEAEESERRNEEFRSRS 363
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+ F+ A++VD++IAHLLV EGF VEE+A V + +++ IEGFDE+ A E+Q RAR +L
Sbjct: 364 KLFIDALDVDDVIAHLLVTEGFTTVEEVAYVPLEDLSGIEGFDEDVAAELQQRARTFLAE 423
Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479
D ++LGVS+E+ ++ G+ + V LG IKT++DL + D+L+
Sbjct: 424 QDERYDAMRKDLGVSDEMAALEGLSPAMLVKLGHREIKTLDDLGDLASDELIDI------ 477
Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
+ +DQ ++I+ AR W + E
Sbjct: 478 --------VGKDEMNEDQANAVIMAARAH--WFDGE 503
>gi|58040013|ref|YP_191977.1| transcription elongation factor NusA [Gluconobacter oxydans 621H]
gi|58002427|gb|AAW61321.1| N utilization substance protein A NusA [Gluconobacter oxydans 621H]
Length = 517
Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats.
Identities = 281/523 (53%), Positives = 372/523 (71%), Gaps = 16/523 (3%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
S R ELL +ADAV+ EK+IDR+ VL M +IQKA R+ YG DIR I+ +TG++
Sbjct: 3 TSVTRPELLLVADAVSREKNIDREEVLEAMEQAIQKAGRAKYGHEKDIRATIDRKTGEVR 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L R E VE VEN QI L +AR P I G + DPLPP+DFGR+A Q+AKQVI+Q+
Sbjct: 63 LSRWTEAVEHVENEDTQIPLHIARKFQPEIQAGEHLVDPLPPIDFGRIAAQTAKQVIVQR 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VRE ER RQY EFKD+VGEI++GTVKR EYGN++V++G+++ ++RRDE I RE+ R DR
Sbjct: 123 VREYERKRQYNEFKDRVGEIVNGTVKRTEYGNLMVEIGHTEALLRRDELIPRESFRNSDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++YIYDVR E RGPQ+ LSRTHP F+ KLF EVPEIY+GI+++KAVSRDPGSRAK+AV
Sbjct: 183 VRAYIYDVRDEPRGPQIFLSRTHPAFLAKLFAQEVPEIYDGIIEIKAVSRDPGSRAKMAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S D++IDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSP +ATFV+NAL PA V+KVV+
Sbjct: 243 ISRDAAIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPQAATFVVNALAPAEVSKVVM 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DE+ GR+EV+VP EQLSLAIGRRGQNVRLASQLT W IDI+TE E+S RQ++F +R+
Sbjct: 303 DEEAGRVEVVVPDEQLSLAIGRRGQNVRLASQLTRWDIDILTEAEESERRQEEFRKRSSQ 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F++A++VD++IA LLV EGF +EELA E+ IEGFDE A E+ RA +YL +
Sbjct: 363 FVEALDVDDVIAGLLVTEGFHTIEELAYTDPGELNDIEGFDESVAEELMHRANDYLASKE 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
L + + LGV++++ + +++ V LGE G+KT++DLA + D+L+
Sbjct: 423 QALDDQRKALGVTDDVAELGTFTNQMLVTLGEKGVKTLDDLADLAGDELVEI-------- 474
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524
L +D +I+ AR W + E+ + ++
Sbjct: 475 ------LGEEAIDEDAANEIIMAARAH--WFDGEEADSAKPEN 509
>gi|241761099|ref|ZP_04759188.1| NusA antitermination factor [Zymomonas mobilis subsp. mobilis ATCC
10988]
gi|241374718|gb|EER64179.1| NusA antitermination factor [Zymomonas mobilis subsp. mobilis ATCC
10988]
Length = 538
Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats.
Identities = 281/529 (53%), Positives = 386/529 (72%), Gaps = 7/529 (1%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
+SAN+ ELL IADAVA EK IDR +V+ M ++IQ+AAR+ YG +DIR +I+P+TGD+
Sbjct: 5 ISANKAELLAIADAVAREKLIDRAIVIEAMEEAIQRAARARYGAENDIRAKIDPKTGDMR 64
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L+R++EVV++V+++ Q+S+ A+ +G + DPLPP++FGR+A Q+AKQVI QK
Sbjct: 65 LWRVVEVVDQVDDFFKQVSVVDAQKLQNGASVGDFIVDPLPPIEFGRIAAQAAKQVIFQK 124
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VR+AER+RQY EFKD++GEII+G VKR+E+G+V+VDLG ++G +RRD+ I RE R GDR
Sbjct: 125 VRDAERERQYAEFKDRIGEIITGIVKRIEFGHVVVDLGRAEGALRRDQQIPRETFRVGDR 184
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V+S I +VRRE RGPQ+LLSR+HP FM KLF EVPEIY+GI+++KA SRDPGSRAK+AV
Sbjct: 185 VRSLIMNVRRENRGPQILLSRSHPNFMKKLFAQEVPEIYDGIIEIKACSRDPGSRAKIAV 244
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S D++IDPVGACVGM+GSRVQAVV E++ EKIDI+ WS D ATFV+N+L+PA V++VV+
Sbjct: 245 VSQDNTIDPVGACVGMKGSRVQAVVQEVQGEKIDIIPWSEDLATFVVNSLQPAQVSRVVI 304
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIE +VP +QLSLAIGRRGQNVRLASQLTG IDI+TE + S RQK+F ++
Sbjct: 305 DEDDSRIEAVVPDDQLSLAIGRRGQNVRLASQLTGSAIDILTEADASERRQKEFVAHSEL 364
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F ++VDE +A LLVAEGF +EE+A V +EI++IEG DEE A E+Q RARE LE +
Sbjct: 365 FQHDLDVDETLAQLLVAEGFGSLEEVAYVDQAEISAIEGIDEELASELQNRAREALEQRE 424
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL-----GWSEN 476
+++ R+LGV + L +P + + + LG+ GIKT++DL S D+L+
Sbjct: 425 AEAREERRKLGVEDALADLPYMTEAMLLTLGKAGIKTLDDLGDLSTDELVHKKRQDQRRR 484
Query: 477 KGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525
+ + DG L+ G ++Q +I+ AR W + + +D
Sbjct: 485 HSSDNNEEDGILAEYGLSQEQGNEIIMAARAH--WFDDAEDETHSSEDT 531
>gi|260752935|ref|YP_003225828.1| transcription elongation factor NusA [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|283856277|ref|YP_162291.2| transcription elongation factor NusA [Zymomonas mobilis subsp.
mobilis ZM4]
gi|258552298|gb|ACV75244.1| NusA antitermination factor [Zymomonas mobilis subsp. mobilis NCIMB
11163]
gi|283775273|gb|AAV89180.2| NusA antitermination factor [Zymomonas mobilis subsp. mobilis ZM4]
Length = 538
Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats.
Identities = 281/529 (53%), Positives = 386/529 (72%), Gaps = 7/529 (1%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
+SAN+ ELL IADAVA EK IDR +V+ M ++IQ+AAR+ YG +DIR +I+P+TGD+
Sbjct: 5 ISANKAELLAIADAVAREKLIDRAIVIEAMEEAIQRAARARYGAENDIRAKIDPKTGDMR 64
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L+R++EVV++V+++ Q+S+ A+ +G + DPLPP++FGR+A Q+AKQVI QK
Sbjct: 65 LWRVVEVVDQVDDFFKQVSVVDAQKLQNGAAVGDFIVDPLPPIEFGRIAAQAAKQVIFQK 124
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VR+AER+RQY EFKD++GEII+G VKR+E+G+V+VDLG ++G +RRD+ I RE R GDR
Sbjct: 125 VRDAERERQYAEFKDRIGEIITGIVKRIEFGHVVVDLGRAEGALRRDQQIPRETFRVGDR 184
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V+S I +VRRE RGPQ+LLSR+HP FM KLF EVPEIY+GI+++KA SRDPGSRAK+AV
Sbjct: 185 VRSLIMNVRRENRGPQILLSRSHPNFMKKLFAQEVPEIYDGIIEIKACSRDPGSRAKIAV 244
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S D++IDPVGACVGM+GSRVQAVV E++ EKIDI+ WS D ATFV+N+L+PA V++VV+
Sbjct: 245 VSQDNTIDPVGACVGMKGSRVQAVVQEVQGEKIDIIPWSEDLATFVVNSLQPAQVSRVVI 304
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIE +VP +QLSLAIGRRGQNVRLASQLTG IDI+TE + S RQK+F ++
Sbjct: 305 DEDDSRIEAVVPDDQLSLAIGRRGQNVRLASQLTGSAIDILTEADASERRQKEFVAHSEL 364
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F ++VDE +A LLVAEGF +EE+A V +EI++IEG DEE A E+Q RARE LE +
Sbjct: 365 FQHDLDVDETLAQLLVAEGFGSLEEVAYVDQAEISAIEGIDEELASELQNRAREALEQRE 424
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL-----GWSEN 476
+++ R+LGV + L +P + + + LG+ GIKT++DL S D+L+
Sbjct: 425 AEAREERRKLGVEDALADLPYMTEAMLLTLGKAGIKTLDDLGDLSTDELVHKKRQDQRRR 484
Query: 477 KGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525
+ + DG L+ G ++Q +I+ AR W + + +D
Sbjct: 485 HSSDNNEEDGILAEYGLSQEQGNEIIMAARAH--WFDDAEDETHSSEDT 531
>gi|329891253|ref|ZP_08269596.1| transcription elongation protein nusA [Brevundimonas diminuta ATCC
11568]
gi|328846554|gb|EGF96118.1| transcription elongation protein nusA [Brevundimonas diminuta ATCC
11568]
Length = 576
Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats.
Identities = 295/533 (55%), Positives = 382/533 (71%), Gaps = 9/533 (1%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
+SANRLELL IADAVA EK+IDR++V+ + ++IQK A+S YG DIR +I+ +TG++S
Sbjct: 4 ISANRLELLSIADAVAREKNIDREIVIEAIEEAIQKGAKSRYGAHHDIRAQIDHKTGELS 63
Query: 62 LFRLLEVVEEVENYTCQ---------ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQ 112
L R + +V + + + L+ A RD ++G + LPP +FGRV Q
Sbjct: 64 LTRHVTIVADDWQPEDELEEFNDSAMVRLRDALKRDAEAEVGKEYVEVLPPFEFGRVQTQ 123
Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETIS 172
A+QV+ KVREAER QY EFKD+VGEI++GTVKRVEYGN IVDLG +G++RRD++I
Sbjct: 124 MARQVVTGKVREAERANQYEEFKDRVGEIVNGTVKRVEYGNTIVDLGRGEGIMRRDQSIP 183
Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRD 232
RE GDRV++YIYDVR E +GPQV+LSR HP FM KLF EVPE+Y+G+++++A +RD
Sbjct: 184 REVFNVGDRVRTYIYDVRPEAKGPQVMLSRAHPGFMAKLFAQEVPEVYDGVIEIRAAARD 243
Query: 233 PGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALR 292
GSRAK+AV S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL
Sbjct: 244 AGSRAKMAVLSNDSSIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWNEDEPTFIVNALA 303
Query: 293 PAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
PA V KVVLDE+ R+EV+VP EQLSLAIGRRGQNVRLASQLTGW IDIITE +DS RQ
Sbjct: 304 PAEVAKVVLDEEADRVEVVVPDEQLSLAIGRRGQNVRLASQLTGWQIDIITESQDSERRQ 363
Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412
++F ERT F +A++VDE IA LLV EGFA VE+LA V+ EI+ IEGFDE+TA E+Q R
Sbjct: 364 REFAERTALFQEALDVDETIAQLLVTEGFATVEDLAFVEAYEISEIEGFDEDTAEELQTR 423
Query: 413 AREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG 472
ARE+LE L K LGV + + +PG+ + I VALGE G+KT+EDLA + D++ G
Sbjct: 424 AREHLERQAAELDAKRVALGVEDGVLDVPGVTAAIAVALGEGGVKTVEDLADLATDEIRG 483
Query: 473 WSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525
E +GG K G L S ++ E +I+ AR GWI+ ++ E +
Sbjct: 484 GYEVRGGERVKVPGVLESFNLSQEDAEMLILQARVAAGWIDASELPQPEYVEE 536
>gi|254456337|ref|ZP_05069766.1| transcription termination factor [Candidatus Pelagibacter sp.
HTCC7211]
gi|207083339|gb|EDZ60765.1| transcription termination factor [Candidatus Pelagibacter sp.
HTCC7211]
Length = 517
Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats.
Identities = 244/507 (48%), Positives = 352/507 (69%), Gaps = 3/507 (0%)
Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
A++LELL+IA+AVA EKSID+++++S M I KAA+S +G ++I+V I+ ++GDI +F
Sbjct: 6 ADKLELLRIAEAVALEKSIDKELIISSMETGIAKAAKSKFGQDNEIKVSIDRDSGDIEIF 65
Query: 64 RLLEVVEEVENYTCQISLKVA---RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
R L V E EN +I L+ A + + +G V PLP DFGR+A Q+AKQVI
Sbjct: 66 RKLIVAENPENSNTEIKLEDAIILNEINKDKAVGDEVLQPLPSFDFGRIAAQTAKQVISF 125
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
VREAER+RQY +F DK I+SG VKR+E+GNVI DLG ++ +I+++E I REN++ GD
Sbjct: 126 NVREAERERQYNDFIDKKDTILSGIVKRLEFGNVIADLGRTEAIIQKNEMIPRENIKAGD 185
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
R+K+Y YDVRRE RG Q+ LSR HP+FM KLF EVPEIY+G++++K+ SRDPGSRAK+
Sbjct: 186 RIKAYCYDVRREPRGQQIFLSRAHPKFMEKLFVQEVPEIYDGLIEIKSSSRDPGSRAKIC 245
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V + D+S+DPVGACVGMRGSRVQAVV EL+ EKIDIV WS D A V NAL PA V +V
Sbjct: 246 VKAVDTSLDPVGACVGMRGSRVQAVVNELQGEKIDIVNWSEDPAILVSNALSPAEVQRVN 305
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+D + +++VI+ +E LS AIGRRGQNVRLA++L + I+I+T+ EDS RQ +F E+T+
Sbjct: 306 VDIERKKLDVILTEENLSKAIGRRGQNVRLATKLLNYEINIMTDAEDSERRQVEFKEKTE 365
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
F++ + +DE + LLVAEGF+ ++++ + IEG +E+TA+ + RA+E+ +
Sbjct: 366 NFVKNLELDETLGQLLVAEGFSSIDDIKDTTAENLMKIEGIEEDTAIALIERAKEFHQKD 425
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ ++I+ELG+ + L ++ G+ + V LGE I T+ED A + D+L G + G
Sbjct: 426 QEDISERIKELGLQDSLINLKGLTPGMLVTLGEQKILTLEDFADLASDELTGGYDVVKGE 485
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARY 507
K G+L K++ + +I+ AR
Sbjct: 486 RVKIQGYLEDFALSKEEADELIMSARK 512
>gi|123440812|ref|YP_001004803.1| transcription elongation factor NusA [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|332160078|ref|YP_004296655.1| transcription elongation factor NusA [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|122087773|emb|CAL10559.1| N utilization substance protein A [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|318607362|emb|CBY28860.1| transcription termination protein NusA [Yersinia enterocolitica
subsp. palearctica Y11]
gi|325664308|gb|ADZ40952.1| transcription elongation factor NusA [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|330862029|emb|CBX72196.1| transcription elongation protein nusA [Yersinia enterocolitica
W22703]
Length = 495
Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats.
Identities = 201/510 (39%), Positives = 317/510 (62%), Gaps = 19/510 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR
Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
V+EV T +I+L+ A+ DPS+ +G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WVAVDEVTMPTREITLEAAQYEDPSLQLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F+ +GEI++GTVK+V ++ +DLGN+ + VI R++ + REN RPGDR++
Sbjct: 122 ERAMVVEQFRQYLGEIVTGTVKKVNRDSIALDLGNNAEAVINREDMLPRENFRPGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+YDVR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYDVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + F +
Sbjct: 302 KHTMDVAVEASNLAQAIGRNGQNVRLAAQLSGWELNVMTADDLQAKHQAEAHAAIDTFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A +LV EGF+ +EELA V + E+ I+G DE+T ++ RA+ L + +
Sbjct: 362 YLDIDEDFATVLVEEGFSSLEELAYVPMKELLEIDGLDEDTVEALRDRAKAALTTLALAQ 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + + +++L ++ G++ + L G+ T+EDLA +DDL
Sbjct: 422 EESLGDQKPADDLLNLAGLERSMAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
G +Q +I+ AR + W
Sbjct: 472 -------GLSDEQAGELIMAAR-NICWFGD 493
>gi|330991197|ref|ZP_08315149.1| Transcription elongation protein nusA [Gluconacetobacter sp.
SXCC-1]
gi|329761690|gb|EGG78182.1| Transcription elongation protein nusA [Gluconacetobacter sp.
SXCC-1]
Length = 523
Score = 494 bits (1273), Expect = e-137, Method: Composition-based stats.
Identities = 285/524 (54%), Positives = 371/524 (70%), Gaps = 16/524 (3%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
S R ELL +ADAVA EKSIDR+ VL M +IQKA R+ YG DIR I+ TGD+
Sbjct: 11 TSVARPELLLVADAVAREKSIDREEVLEAMEQAIQKAGRAKYGHEKDIRATIDRRTGDVR 70
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L R E VE VEN QI L +AR P I +G + DPLPP+DFGR+A Q+AKQVI+Q+
Sbjct: 71 LSRWTEAVETVENEETQIPLYIARKFKPEIQLGEYLIDPLPPIDFGRIAAQTAKQVIVQR 130
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VRE ER RQ+ +FKD+VGEII+GTVKR EYGN++V++G+++ ++RRDE I RE+ R DR
Sbjct: 131 VREYERRRQFNDFKDRVGEIINGTVKRTEYGNLLVEIGDAEALLRRDELIPRESFRNSDR 190
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++YIYDVR E RGPQ+ LSRTHP F+ KLF EVPEIY+GI+++KAV+RDPGSRAK+AV
Sbjct: 191 VRAYIYDVRDEPRGPQIFLSRTHPAFLAKLFAQEVPEIYDGIIEIKAVARDPGSRAKMAV 250
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S D++IDPVGACVG+RG RVQ VV EL+ EKIDI+ WSP +ATFV+NAL PA V+KVV+
Sbjct: 251 ISRDAAIDPVGACVGVRGRRVQEVVKELQGEKIDIIPWSPQAATFVVNALAPAEVSKVVM 310
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DE+ GR+EV+VP +QLSLAIGRRGQNVRLASQLT W IDI+TE E+S RQ++F R+
Sbjct: 311 DEEAGRVEVVVPDDQLSLAIGRRGQNVRLASQLTRWDIDILTEAEESERRQEEFRRRSSQ 370
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F+ +++VD++IA LLV EGF VEELA E+A+IEGFDE+ A E+ RA +L +
Sbjct: 371 FVTSLDVDDVIAGLLVTEGFHSVEELAFADPEELANIEGFDEDVAGELVLRAERHLAQQE 430
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
L +K RELGVS+++ + +++ V LGE G+KT++DLA + D+L+
Sbjct: 431 EQLDEKRRELGVSDDIAVLGVFTNQMLVTLGEKGVKTLDDLADLAGDELVEI-------- 482
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525
L S +D +I+ AR W E + D E
Sbjct: 483 ------LGSDAIDEDAANEIIMAARAH--WFEGDDRGDAEPGKE 518
>gi|238761767|ref|ZP_04622741.1| Transcription termination factor NusA [Yersinia kristensenii ATCC
33638]
gi|238699881|gb|EEP92624.1| Transcription termination factor NusA [Yersinia kristensenii ATCC
33638]
Length = 495
Score = 494 bits (1273), Expect = e-137, Method: Composition-based stats.
Identities = 201/510 (39%), Positives = 316/510 (61%), Gaps = 19/510 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR
Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
V+EV T +I+L A+ DPSI +G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WVAVDEVTMPTREITLDAAQYEDPSIQLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F+ +GEI++GTVK+V ++ +DLG++ + VI R++ + REN RPGDR++
Sbjct: 122 ERAMVVEQFRQYLGEIVTGTVKKVNRDSIALDLGHNAEAVINREDMLPRENFRPGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+YDVR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYDVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + F +
Sbjct: 302 KHTMDVAVEASNLAQAIGRNGQNVRLAAQLSGWELNVMTADDLQAKHQAEAHAAIDTFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A +LV EGF+ +EELA V + E+ I+G DE+T ++ RA+ L + +
Sbjct: 362 YLDIDEDFATILVEEGFSSLEELAYVPMKELLEIDGLDEDTVEALRDRAKAALTTLALAQ 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + + +++L ++ G++ + L G+ T+EDLA +DDL
Sbjct: 422 EESLGDQKPADDLLNLAGLERSMAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
G +Q +I+ AR + W
Sbjct: 472 -------GLSDEQAGELIMAAR-NICWFGD 493
>gi|238750125|ref|ZP_04611628.1| Transcription termination factor NusA [Yersinia rohdei ATCC 43380]
gi|238711669|gb|EEQ03884.1| Transcription termination factor NusA [Yersinia rohdei ATCC 43380]
Length = 495
Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats.
Identities = 200/510 (39%), Positives = 317/510 (62%), Gaps = 19/510 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR
Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
V+EV T +I+++ A+ DPS+ +G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WVAVDEVTMPTREITIEAAQFEDPSLQLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F+ +GEI++GTVK+V ++ +DLGN+ + VI R++ + REN RPGDR++
Sbjct: 122 ERAMVVEQFRQYLGEIVTGTVKKVNRDSIALDLGNNAEAVIGREDMLPRENFRPGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+YDVR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYDVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + F +
Sbjct: 302 KHTMDVAVEASNLAQAIGRNGQNVRLAAQLSGWELNVMTADDLQAKHQAEAHAAIDTFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A +LV EGF+ +EELA V + E+ I+G DE+T ++ RA+ L + +
Sbjct: 362 YLDIDEDFATILVEEGFSSLEELAYVPVKELLEIDGLDEDTVEALRDRAKAALTTLALAQ 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + + +++L ++ G++ + L G+ T+EDLA +DDL
Sbjct: 422 EESLGDQKPADDLLNLAGLERSMAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
G +Q +I+ AR + W
Sbjct: 472 -------GLSDEQAGELIMAAR-NICWFGD 493
>gi|91762480|ref|ZP_01264445.1| transcription termination factor [Candidatus Pelagibacter ubique
HTCC1002]
gi|91718282|gb|EAS84932.1| transcription termination factor [Candidatus Pelagibacter ubique
HTCC1002]
Length = 530
Score = 494 bits (1271), Expect = e-137, Method: Composition-based stats.
Identities = 242/506 (47%), Positives = 350/506 (69%), Gaps = 3/506 (0%)
Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
+++LELL+IA+AVA EKSID+++++ M I KAA+S +G ++I+V I+ E+GDI +F
Sbjct: 19 SDKLELLRIAEAVALEKSIDKELIIDSMETGIAKAAKSKFGQDNEIKVLIDRESGDIGIF 78
Query: 64 RLLEVVEEVENYTCQISLKVA---RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
R L VVE+ EN +I+L+ A + + IG + PLP DFGR+A Q+AKQVI
Sbjct: 79 RKLIVVEKPENTNTEINLQDAIILNEVNKDKKIGDEILQPLPSFDFGRIAAQTAKQVISF 138
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
VREAER+RQY +F DK I+SG VKR+E+GNVIVDLG ++ +I+++E I REN++ GD
Sbjct: 139 NVREAERERQYNDFIDKKDSILSGIVKRLEFGNVIVDLGRTEAIIQKNEMIPRENIKAGD 198
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
RVK+Y YDV+RE RG Q+ LSR HP+FM KLF EVPEIY+G++++K+ +RDPGSRAK+
Sbjct: 199 RVKAYCYDVKREARGQQIFLSRAHPKFMEKLFVQEVPEIYDGLIEIKSSARDPGSRAKIC 258
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V + D+S+DPVGACVGMRGSRVQAVV EL+ EKIDIV WS D A V NAL PA V +V
Sbjct: 259 VKAVDTSLDPVGACVGMRGSRVQAVVNELQGEKIDIVNWSEDPAIVVSNALSPAEVQRVN 318
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+D +++VI+ +E LS AIGRRGQNVRLA++L + I+I+T+ EDS RQ +F E+T+
Sbjct: 319 VDSVAKKLDVILTEENLSKAIGRRGQNVRLATKLLNYEINIMTDAEDSERRQSEFKEKTE 378
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
F++ + +DE + LLVAEGF+ + ++ + IEG +E+TA + RA+E+ +
Sbjct: 379 NFVKNLELDETLGQLLVAEGFSSISDIKDSSPENLMKIEGIEEDTAKALIERAKEFYQKD 438
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ ++I++LG+ ++L + G+ + V LGE I +ED A + D+L G + G
Sbjct: 439 QEDITQRIKDLGLQDDLINHKGLTPGMLVTLGEQKILKLEDFADLASDELTGGYDVVKGE 498
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHAR 506
K G+L K + + +I+ AR
Sbjct: 499 RIKIQGYLEDFALSKTEADELIMSAR 524
>gi|293393154|ref|ZP_06637469.1| N utilization substance A [Serratia odorifera DSM 4582]
gi|291424300|gb|EFE97514.1| N utilization substance A [Serratia odorifera DSM 4582]
Length = 495
Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats.
Identities = 203/510 (39%), Positives = 312/510 (61%), Gaps = 19/510 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ +TGD FR
Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVSIDRKTGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
V+EV T +I+L+ A+ DPSI++GG V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WVAVDEVTQPTREITLEAAQYEDPSIELGGYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER F+ GEI++G VK+V ++ +DLG + + VI R++ + REN RPGDR++
Sbjct: 122 ERAMVVDAFRQHEGEIVTGVVKKVNRDSIALDLGGNAEAVIGREDMLPRENFRPGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y VR E RG Q+ +SR+ P+ + +LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYAVRPEARGAQLFVSRSSPEMLKELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F +
Sbjct: 302 RHTMDIAVEASNLAQAIGRNGQNVRLASQLSGWELNVMTADDLQAKHQAEAHAAIDTFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A +LV EGF+ +EELA V I E+ I+G DE+ ++ RA+ L + +
Sbjct: 362 YLDIDEEFATVLVEEGFSTLEELAYVPIKELLEIDGLDEDMVEALRDRAKAALTTLALAQ 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + + +++L ++PG++ + L G+ T+EDLA VDDL
Sbjct: 422 EESLGDQKPADDLLNLPGLERSMAFKLAARGVCTLEDLAEQGVDDLADIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
G Q +I+ AR + W
Sbjct: 472 -------GLSDQQAGELIMAAR-NICWFGD 493
>gi|238783516|ref|ZP_04627538.1| Transcription termination factor NusA [Yersinia bercovieri ATCC
43970]
gi|238797553|ref|ZP_04641050.1| Transcription termination factor NusA [Yersinia mollaretii ATCC
43969]
gi|238715571|gb|EEQ07561.1| Transcription termination factor NusA [Yersinia bercovieri ATCC
43970]
gi|238718550|gb|EEQ10369.1| Transcription termination factor NusA [Yersinia mollaretii ATCC
43969]
Length = 495
Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats.
Identities = 200/510 (39%), Positives = 315/510 (61%), Gaps = 19/510 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR
Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
V EV T +I+L+ A+ DPS+ +G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WVAVNEVTMPTREITLEAAQYEDPSLQLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F+ +GEI++G VK+V ++ +DLGN+ + VI R++ + REN RPGDR++
Sbjct: 122 ERAMVVEQFRQYLGEIVTGIVKKVNRDSIALDLGNNAEAVIGREDMLPRENFRPGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+YDVR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYDVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + F +
Sbjct: 302 RHTMDVAVEASNLAQAIGRNGQNVRLAAQLSGWELNVMTADDLQAKHQAEAHAAIDTFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A +LV EGF+ +EELA V + E+ I+G DE+T ++ RA+ L + +
Sbjct: 362 YLDIDEDFATVLVEEGFSSLEELAYVPMKELLEIDGLDEDTVEALRDRAKAALTTLALAQ 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + + +++L ++ G++ + L G+ T+EDLA +DDL
Sbjct: 422 EESLGDQKPADDLLNLAGLERSMAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
G +Q +I+ AR + W
Sbjct: 472 -------GLSDEQAGELIMAAR-NICWFGD 493
>gi|238787593|ref|ZP_04631391.1| Transcription termination factor NusA [Yersinia frederiksenii ATCC
33641]
gi|238724380|gb|EEQ16022.1| Transcription termination factor NusA [Yersinia frederiksenii ATCC
33641]
Length = 495
Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats.
Identities = 200/510 (39%), Positives = 315/510 (61%), Gaps = 19/510 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR
Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
V EV T +I++ A+ DPS+ +G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WVAVNEVTMPTREITIDAAQFEDPSLQLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F+ +GEI++GTVK+V ++ +DLGN+ + VI R++ + REN RPGDR++
Sbjct: 122 ERAMVVEQFRQYLGEIVTGTVKKVNRDSIALDLGNNAEAVIGREDMLPRENFRPGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+YDVR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYDVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + F +
Sbjct: 302 KHTMDVAVEASNLAQAIGRNGQNVRLAAQLSGWELNVMTADDLQAKHQAEAHAAIDTFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A +LV EGF+ +EELA V + E+ I+G DE+T ++ RA+ L + +
Sbjct: 362 YLDIDEDFATVLVEEGFSSLEELAYVPMKELLEIDGLDEDTVEALRDRAKAALTTLALAQ 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + + +++L ++ G++ + L G+ T+EDLA +DDL
Sbjct: 422 EESLGDQKPADDLLNLAGLERSMAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
G +Q +I+ AR + W
Sbjct: 472 -------GLSDEQAGELIMAAR-NICWFGD 493
>gi|238793021|ref|ZP_04636650.1| Transcription termination factor NusA [Yersinia intermedia ATCC
29909]
gi|238727621|gb|EEQ19146.1| Transcription termination factor NusA [Yersinia intermedia ATCC
29909]
Length = 495
Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats.
Identities = 199/510 (39%), Positives = 314/510 (61%), Gaps = 19/510 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR
Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
V EV T +I+L A+ DP++ +G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WVAVNEVTMPTREITLDAAQYEDPTLQLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F+ +GEI++G VK+V ++ +DLGN+ + VI R++ + REN RPGDR++
Sbjct: 122 ERAMVVDQFRQYLGEIVTGVVKKVNRDSIALDLGNNAEAVIGREDMLPRENFRPGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+YDVR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYDVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + F +
Sbjct: 302 RHTMDVAVEASNLAQAIGRNGQNVRLAAQLSGWELNVMTADDLQAKHQAEAHAAIDTFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A +LV EGF+ +EELA V + E+ I+G DE+T ++ RA+ L + +
Sbjct: 362 YLDIDEDFATILVEEGFSSLEELAYVPMKELLEIDGLDEDTVEALRDRAKAALTTLALAQ 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + + +++L ++ G++ + L G+ T+EDLA +DDL
Sbjct: 422 EESLGDQKPADDLLNLAGLERSMAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
G +Q +I+ AR + W
Sbjct: 472 -------GLSDEQAGELIMAAR-NICWFGD 493
>gi|238760242|ref|ZP_04621387.1| Transcription termination factor NusA [Yersinia aldovae ATCC 35236]
gi|238701565|gb|EEP94137.1| Transcription termination factor NusA [Yersinia aldovae ATCC 35236]
Length = 495
Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats.
Identities = 199/510 (39%), Positives = 313/510 (61%), Gaps = 19/510 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR
Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
V+EV T +I+L A+ DP++ +G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WVAVDEVTMPTREITLDAAQYEDPTLQLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F+ +GEI++G VK+V ++ +DLGN+ + VI R++ + REN RPGDR++
Sbjct: 122 ERAMVVEQFRQYLGEIVTGIVKKVNRDSIALDLGNNAEAVIGREDMLPRENFRPGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+YDVR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYDVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + F +
Sbjct: 302 RHTMDVAVEASNLAQAIGRNGQNVRLAAQLSGWELNVMTADDLQAKHQAEAHAAIDTFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+ +DE A LV EGF+ +EELA V + E+ I+G DE+T ++ RA+ L + +
Sbjct: 362 YLAIDEDFATTLVEEGFSSLEELAYVPMKELLEIDGLDEDTVEALRDRAKAALTTLALAQ 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + + +++L ++ G++ + L G+ T+EDLA +DDL E
Sbjct: 422 EESLGDQKPADDLLNLAGLERSMAFKLAARGVCTLEDLAEQGIDDLADIEE--------- 472
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
+Q +I+ AR + W
Sbjct: 473 --------LSDEQAGELIMAAR-NICWFGD 493
>gi|332188268|ref|ZP_08389995.1| transcription termination factor NusA [Sphingomonas sp. S17]
gi|332011664|gb|EGI53742.1| transcription termination factor NusA [Sphingomonas sp. S17]
Length = 538
Score = 492 bits (1266), Expect = e-137, Method: Composition-based stats.
Identities = 283/531 (53%), Positives = 382/531 (71%), Gaps = 9/531 (1%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
+SAN+ EL+ IA+AVA EK ID+ +V+ M D+IQ+AAR+ YG +DIR +++P +GD+
Sbjct: 5 ISANKAELIAIANAVASEKMIDKGIVIEAMEDAIQRAARARYGAENDIRAKLDPNSGDLR 64
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L+R++EVVE+V++Y QI LK A IG + DPLPP++FGR+A Q+AKQVI QK
Sbjct: 65 LWRVVEVVEQVDDYYKQIDLKGAEKLQKGAAIGDFIVDPLPPIEFGRIAAQAAKQVIFQK 124
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VR+AERDRQY EFKD+ GEII+G VKRVE+G+++VDLG ++GVIRRD+ I RE +R DR
Sbjct: 125 VRDAERDRQYDEFKDRQGEIITGVVKRVEFGHIVVDLGRAEGVIRRDQQIPREVVRVNDR 184
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++S I +VRRE RGPQ+ LSR HP FM KLF EVPEIY+GI+++KA +RDPGSRAK+ V
Sbjct: 185 IRSLILNVRRENRGPQIFLSRAHPDFMKKLFAQEVPEIYDGIIEIKAAARDPGSRAKIGV 244
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S DSSIDPVGACVGM+GSRVQAVV E++ EKIDI+ WSPD+ATFV+NAL+PA V++VV+
Sbjct: 245 ISHDSSIDPVGACVGMKGSRVQAVVQEMQGEKIDIIPWSPDTATFVVNALQPANVSRVVI 304
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DE+ RIEV+VP +QLSLAIGRRGQNVRLASQLT IDI+TE + S RQK+F ++
Sbjct: 305 DEEEDRIEVVVPDDQLSLAIGRRGQNVRLASQLTAKAIDILTEADASEKRQKEFVANSEM 364
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F ++VDE +A LLVAEGF +EE+A V++ E+A+IEGFDE+ A E+Q RA+E L+ +
Sbjct: 365 FQNELDVDETLAQLLVAEGFGALEEVAYVELDELAAIEGFDEDLAQELQSRAQEALDRRE 424
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ + R LGV + L +P + + V LG+ GIKT++DLA + D+L+ ++
Sbjct: 425 QAARDERRALGVEDALAEMPYLTEAMLVTLGKAGIKTLDDLADLATDELVEKKRSEPRRR 484
Query: 482 EKFD-------GFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525
G L+ G +Q +I+ AR W E E +A
Sbjct: 485 GDDAPRAAPKGGILAEYGLSDEQGNEIIMAARAH--WFTDEDEPVAEAGEA 533
>gi|51594831|ref|YP_069022.1| transcription elongation factor NusA [Yersinia pseudotuberculosis
IP 32953]
gi|108806045|ref|YP_649961.1| transcription elongation factor NusA [Yersinia pestis Antiqua]
gi|108813401|ref|YP_649168.1| transcription elongation factor NusA [Yersinia pestis Nepal516]
gi|145600793|ref|YP_001164869.1| transcription elongation factor NusA [Yersinia pestis Pestoides F]
gi|153947426|ref|YP_001402551.1| transcription elongation factor NusA [Yersinia pseudotuberculosis
IP 31758]
gi|153997274|ref|ZP_02022374.1| N utilization substance protein A [Yersinia pestis CA88-4125]
gi|162418514|ref|YP_001608285.1| transcription elongation factor NusA [Yersinia pestis Angola]
gi|165925730|ref|ZP_02221562.1| transcription termination factor NusA [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165936779|ref|ZP_02225346.1| transcription termination factor NusA [Yersinia pestis biovar
Orientalis str. IP275]
gi|166010132|ref|ZP_02231030.1| transcription termination factor NusA [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166214620|ref|ZP_02240655.1| transcription termination factor NusA [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167401309|ref|ZP_02306809.1| transcription termination factor NusA [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167420758|ref|ZP_02312511.1| transcription termination factor NusA [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167423617|ref|ZP_02315370.1| transcription termination factor NusA [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|170025946|ref|YP_001722451.1| transcription elongation factor NusA [Yersinia pseudotuberculosis
YPIII]
gi|186893840|ref|YP_001870952.1| transcription elongation factor NusA [Yersinia pseudotuberculosis
PB1/+]
gi|218930511|ref|YP_002348386.1| transcription elongation factor NusA [Yersinia pestis CO92]
gi|229839149|ref|ZP_04459308.1| transcription termination/antitermination L factor [Yersinia pestis
biovar Orientalis str. PEXU2]
gi|229896638|ref|ZP_04511805.1| transcription termination/antitermination L factor [Yersinia pestis
Pestoides A]
gi|229899713|ref|ZP_04514854.1| transcription termination/antitermination L factor [Yersinia pestis
biovar Orientalis str. India 195]
gi|229903875|ref|ZP_04518988.1| transcription termination/antitermination L factor [Yersinia pestis
Nepal516]
gi|270489135|ref|ZP_06206209.1| transcription termination factor NusA [Yersinia pestis KIM D27]
gi|294505370|ref|YP_003569432.1| transcription elongation factor NusA [Yersinia pestis Z176003]
gi|51588113|emb|CAH19719.1| N utilization substance protein A [Yersinia pseudotuberculosis IP
32953]
gi|108777049|gb|ABG19568.1| N utilization substance protein A [Yersinia pestis Nepal516]
gi|108777958|gb|ABG12016.1| N utilization substance protein A [Yersinia pestis Antiqua]
gi|115349122|emb|CAL22085.1| N utilization substance protein A [Yersinia pestis CO92]
gi|145212489|gb|ABP41896.1| N utilization substance protein A [Yersinia pestis Pestoides F]
gi|149288911|gb|EDM38991.1| N utilization substance protein A [Yersinia pestis CA88-4125]
gi|152958921|gb|ABS46382.1| transcription termination factor NusA [Yersinia pseudotuberculosis
IP 31758]
gi|162351329|gb|ABX85277.1| transcription termination factor NusA [Yersinia pestis Angola]
gi|165915428|gb|EDR34038.1| transcription termination factor NusA [Yersinia pestis biovar
Orientalis str. IP275]
gi|165922342|gb|EDR39519.1| transcription termination factor NusA [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165991039|gb|EDR43340.1| transcription termination factor NusA [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166204195|gb|EDR48675.1| transcription termination factor NusA [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166961564|gb|EDR57585.1| transcription termination factor NusA [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167049334|gb|EDR60742.1| transcription termination factor NusA [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167057787|gb|EDR67533.1| transcription termination factor NusA [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169752480|gb|ACA69998.1| NusA antitermination factor [Yersinia pseudotuberculosis YPIII]
gi|186696866|gb|ACC87495.1| NusA antitermination factor [Yersinia pseudotuberculosis PB1/+]
gi|229679645|gb|EEO75748.1| transcription termination/antitermination L factor [Yersinia pestis
Nepal516]
gi|229687205|gb|EEO79280.1| transcription termination/antitermination L factor [Yersinia pestis
biovar Orientalis str. India 195]
gi|229695515|gb|EEO85562.1| transcription termination/antitermination L factor [Yersinia pestis
biovar Orientalis str. PEXU2]
gi|229700416|gb|EEO88448.1| transcription termination/antitermination L factor [Yersinia pestis
Pestoides A]
gi|262363436|gb|ACY60157.1| transcription elongation factor NusA [Yersinia pestis D106004]
gi|262367189|gb|ACY63746.1| transcription elongation factor NusA [Yersinia pestis D182038]
gi|270337639|gb|EFA48416.1| transcription termination factor NusA [Yersinia pestis KIM D27]
gi|294355829|gb|ADE66170.1| transcription elongation factor NusA [Yersinia pestis Z176003]
gi|320013700|gb|ADV97271.1| transcription termination/antitermination L factor [Yersinia pestis
biovar Medievalis str. Harbin 35]
Length = 495
Score = 491 bits (1265), Expect = e-136, Method: Composition-based stats.
Identities = 198/510 (38%), Positives = 313/510 (61%), Gaps = 19/510 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR
Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
V+EV T +I+L A+ DPS+ +G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WVAVDEVTMPTREITLDAAQFEDPSLQLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F+ +G+I++G VK+V ++ +DLG++ + VI R++ + REN RPGDR++
Sbjct: 122 ERAMVVEQFRQYLGQIVTGIVKKVSRDSIALDLGHNAEAVIGREDMLPRENFRPGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+YDVR E RG Q+ +SR+ + +V+LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYDVRPEARGAQLFVSRSRSEMLVELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + F +
Sbjct: 302 KHTMDVAVEASNLAQAIGRNGQNVRLAAQLSGWELNVMTADDLQAKHQAEAHAAIDTFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A +LV EGF+ +EELA V + E+ I+G DE+T ++ RA+ L + +
Sbjct: 362 YLDIDEDFATVLVEEGFSSLEELAYVPMKELLEIDGLDEDTVEALRDRAKAALTTLALAQ 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + +++L ++ G++ + L G+ T+EDLA +DDL
Sbjct: 422 EESFGDQKPADDLLNLAGLERSMAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
G +Q +I+ AR + W
Sbjct: 472 -------GLSDEQAGELIMAAR-NICWFGD 493
>gi|16124300|ref|NP_418864.1| transcription elongation factor NusA [Caulobacter crescentus CB15]
gi|221232982|ref|YP_002515418.1| transcription elongation factor NusA [Caulobacter crescentus
NA1000]
gi|13421138|gb|AAK22032.1| N utilization substance protein A [Caulobacter crescentus CB15]
gi|220962154|gb|ACL93510.1| N utilization substance protein A [Caulobacter crescentus NA1000]
Length = 548
Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats.
Identities = 299/514 (58%), Positives = 391/514 (76%), Gaps = 3/514 (0%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
++ANRLELLQIADAVA EK I+++VV+ + D++QKAAR+ YG DIRV+I+P+TG+ +
Sbjct: 5 IAANRLELLQIADAVAREKGIEKEVVIEAIEDALQKAARARYGAEHDIRVKIDPKTGETT 64
Query: 62 LFRLLEVVEEVENYTCQI---SLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
R++EVV + +I +A+ +IG V + LPP + GRV Q A+QV+
Sbjct: 65 QKRVIEVVSDDAELEGEIGKMPFSIAKRTWRDAEIGKVYEEVLPPFEIGRVQTQMARQVV 124
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178
+ KVREAER+RQY E+KD+VGEI++G+VKRVEYGNVIVDLG +G++RRD++I REN
Sbjct: 125 MHKVREAERERQYDEYKDRVGEIVNGSVKRVEYGNVIVDLGRGEGIMRRDQSIPRENFNV 184
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
GDR+++YIYDVRRE +GPQ++LSR H FM KLF EVPE+Y+G+++++AV+RDPGSRAK
Sbjct: 185 GDRIRAYIYDVRRETKGPQIMLSRAHGGFMAKLFAQEVPEVYDGVIEIRAVARDPGSRAK 244
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV S+D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATF++NAL PA V+K
Sbjct: 245 MAVISNDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWSEDEATFIVNALAPAEVSK 304
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VV+DE+ R+EV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE ++S RQ++F ER
Sbjct: 305 VVMDEEDERVEVVVPDEQLSLAIGRRGQNVRLASQLTGWQIDIMTESQESERRQREFAER 364
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
T F +A++VDE+IA LLV EGFA VE++A V+ EIASIEGFDEETA E+Q RARE+LE
Sbjct: 365 TALFQEALDVDEVIAQLLVTEGFAAVEDVAYVEPHEIASIEGFDEETAEELQTRAREFLE 424
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
L K + LGV +EL +I G+ + VALGE +K++EDLAG DD+ GW ENKG
Sbjct: 425 KEAAELDAKRKALGVEDELLTIEGVTLAMAVALGEGDVKSIEDLAGLVPDDMRGWFENKG 484
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512
G + G L S + E++I+ AR MGW+
Sbjct: 485 GERVREPGILESFNLSPEDAEALIMRARIAMGWV 518
>gi|167644004|ref|YP_001681667.1| transcription elongation factor NusA [Caulobacter sp. K31]
gi|167346434|gb|ABZ69169.1| NusA antitermination factor [Caulobacter sp. K31]
Length = 568
Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats.
Identities = 294/514 (57%), Positives = 384/514 (74%), Gaps = 3/514 (0%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
+SANRLELLQIADAVA EK I+++VV+ + D++QKAAR+ YG DIRV+I+ +TG+ +
Sbjct: 5 ISANRLELLQIADAVAREKGIEKEVVIEAIEDALQKAARARYGAEHDIRVKIDTKTGETT 64
Query: 62 LFRLLEVVEEVENYTCQIS---LKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
R++EVV + +I L A+ ++G + + LPP + GRV Q A+QV+
Sbjct: 65 QKRVIEVVPDDFELEGEIGKVQLSSAKRTWRDAEVGKIYEESLPPFEIGRVQTQMARQVV 124
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178
+ KVREAER+RQY E+KD+ GEI++G+VKRVEYGNVIVDLG +G++RRD++I REN
Sbjct: 125 MHKVREAERERQYDEYKDRAGEIVNGSVKRVEYGNVIVDLGRGEGIMRRDQSIPRENFNV 184
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
GDR+++YIYDVRRE +GPQ++LSR H FM KLF EVPE+Y+G+++++AV+RDPGSRAK
Sbjct: 185 GDRIRAYIYDVRRETKGPQIMLSRAHGGFMAKLFAQEVPEVYDGVIEIRAVARDPGSRAK 244
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATF++NAL PA V+K
Sbjct: 245 MAVISNDSSIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWSEDEATFIVNALAPAEVSK 304
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VV+DE+ R+EV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE ++S RQK F E
Sbjct: 305 VVMDEEDERVEVVVPDEQLSLAIGRRGQNVRLASQLTGWQIDIMTESQESERRQKQFTET 364
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
T F +A++VDE+IA LLV EGFA VE++A V+ EIA+IEGFD+ETA E+Q RARE+L+
Sbjct: 365 TALFQEALDVDEVIAQLLVTEGFATVEDVAYVEPHEIAAIEGFDDETADELQTRAREFLD 424
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
L K ELGV + L I G+ + VALGE +K++EDLAG DDL GW E K
Sbjct: 425 KEAAALDAKRVELGVEDGLLEIEGVTLPVAVALGEGDVKSVEDLAGLIPDDLRGWFETKD 484
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512
G + G L S + E++I+ AR MGW+
Sbjct: 485 GERTREAGILDSFNLSPEDAEALIMRARVVMGWV 518
>gi|22124601|ref|NP_668024.1| transcription elongation factor NusA [Yersinia pestis KIM 10]
gi|45440440|ref|NP_991979.1| transcription elongation factor NusA [Yersinia pestis biovar
Microtus str. 91001]
gi|21957405|gb|AAM84275.1|AE013671_2 transcription pausing L factor [Yersinia pestis KIM 10]
gi|45435297|gb|AAS60856.1| N utilization substance protein A [Yersinia pestis biovar Microtus
str. 91001]
Length = 501
Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats.
Identities = 198/514 (38%), Positives = 314/514 (61%), Gaps = 19/514 (3%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
+ E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD
Sbjct: 4 ATRMNKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFD 63
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
FR V+EV T +I+L A+ DPS+ +G V D + + F R+ Q+AKQVI+QK
Sbjct: 64 TFRRWVAVDEVTMPTREITLDAAQFEDPSLQLGDYVEDQIESVTFDRITTQTAKQVIVQK 123
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180
VREAER +F+ +G+I++G VK+V ++ +DLG++ + VI R++ + REN RPGD
Sbjct: 124 VREAERAMVVEQFRQYLGQIVTGIVKKVSRDSIALDLGHNAEAVIGREDMLPRENFRPGD 183
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
R++ +YDVR E RG Q+ +SR+ + +V+LF +EVPEI ++++KA +RDPGSRAK+A
Sbjct: 184 RIRGVLYDVRPEARGAQLFVSRSRSEMLVELFRIEVPEIGEELIEIKAAARDPGSRAKIA 243
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V ++D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V
Sbjct: 244 VKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIV 303
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DED ++V V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + +
Sbjct: 304 VDEDKHTMDVAVEASNLAQAIGRNGQNVRLAAQLSGWELNVMTADDLQAKHQAEAHAAID 363
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
F + +++DE A +LV EGF+ +EELA V + E+ I+G DE+T ++ RA+ L +
Sbjct: 364 TFTKYLDIDEDFATVLVEEGFSSLEELAYVPMKELLEIDGLDEDTVEALRDRAKAALTTL 423
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ ++ + +++L ++ G++ + L G+ T+EDLA +DDL
Sbjct: 424 ALAQEESFGDQKPADDLLNLAGLERSMAFKLAARGVCTLEDLAEQGIDDLADIE------ 477
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
G +Q +I+ AR + W
Sbjct: 478 -----------GLSDEQAGELIMAAR-NICWFGD 499
>gi|170765858|ref|ZP_02900669.1| transcription termination/antitermination factor NusA [Escherichia
albertii TW07627]
gi|170125004|gb|EDS93935.1| transcription termination/antitermination factor NusA [Escherichia
albertii TW07627]
Length = 495
Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats.
Identities = 205/511 (40%), Positives = 317/511 (62%), Gaps = 19/511 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLVVDEVTQPTKEITLEAARFEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F++ GEII+G VK+V N+ +DLGN+ + VI R++ + REN RPGDRV+
Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F +
Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTR 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I
Sbjct: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQ 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + + +++L ++ G+D + L G+ T+EDLA +DDL
Sbjct: 422 EESLGDNKPADDLLNLEGMDRDLAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ ++I+ AR + W E
Sbjct: 472 -------GLTDEKAGALIMAAR-NICWFGDE 494
>gi|87200505|ref|YP_497762.1| transcription elongation factor NusA [Novosphingobium
aromaticivorans DSM 12444]
gi|87136186|gb|ABD26928.1| NusA antitermination factor [Novosphingobium aromaticivorans DSM
12444]
Length = 544
Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats.
Identities = 290/540 (53%), Positives = 387/540 (71%), Gaps = 17/540 (3%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
+SANR ELL IA+AVA EK ID+ +V+ M ++IQK+AR+ YG +DIR +++P TGD+
Sbjct: 5 ISANRAELLAIANAVATEKMIDKSIVIEAMEEAIQKSARNRYGAENDIRAKLDPRTGDLR 64
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L+R++EVVE VE+Y Q+ LK A P IG + DPLPP+D GR+ QSAKQVI QK
Sbjct: 65 LWRVVEVVEVVEDYFKQVDLKQAEKLQPGAKIGDFIVDPLPPVDLGRIDAQSAKQVIFQK 124
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VR+AERDRQY EFKD+ GE+I+G +K VE+G+VIV+LG ++GVIRRD+ I RE R G+R
Sbjct: 125 VRDAERDRQYDEFKDRAGEVITGVIKSVEFGHVIVNLGRAEGVIRRDQQIPREVPRVGER 184
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++ I V R+ RGPQ+ LSR HP+FM KLF EVPEIY+GI+++KA +RDPGSRAK+ V
Sbjct: 185 VRALILKVERQNRGPQIFLSRAHPEFMKKLFAQEVPEIYDGIIEIKAAARDPGSRAKIGV 244
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S DSSIDPVGACVGM+GSRVQAVV EL+ EKIDI+ WS D+ATFV+NAL+PA V++VV+
Sbjct: 245 ISRDSSIDPVGACVGMKGSRVQAVVQELQGEKIDIIPWSEDTATFVVNALQPATVSRVVI 304
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DE+ RIEV+VP +QLSLAIGRRGQNVRLAS LTG IDI+TE E S RQK+F ER++
Sbjct: 305 DEEESRIEVVVPDDQLSLAIGRRGQNVRLASSLTGSAIDIMTEAEASEKRQKEFAERSKM 364
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F + ++VDE ++ LLVAEGF ++EE+A ++++E+A+IEGFDEE A E+Q RA E +E +
Sbjct: 365 FEEELDVDETLSQLLVAEGFTELEEVAYIEMAELAAIEGFDEELAEELQSRASEAIERRE 424
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWS------- 474
L+++ R LGV + L +P + + VALG+ GIKT++DLA + D+L+
Sbjct: 425 EALREQRRALGVDDALAELPHLTEAMLVALGKAGIKTLDDLADLATDELIAKKRAEQRRR 484
Query: 475 --------ENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDAS 526
+ E G L G ++Q +I+ AR W E E VA+E S
Sbjct: 485 NDKGPRERTERSERTEDKGGVLGEFGLSEEQGNEIIMAARAH--WFEDEPVAEEAADADS 542
>gi|254295403|ref|YP_003061426.1| NusA antitermination factor [Hirschia baltica ATCC 49814]
gi|254043934|gb|ACT60729.1| NusA antitermination factor [Hirschia baltica ATCC 49814]
Length = 572
Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats.
Identities = 287/511 (56%), Positives = 381/511 (74%), Gaps = 1/511 (0%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSAN+LE+L IA+ +A EK ID+ +VL MA++IQKAARS YG DI V I+P++G+ +
Sbjct: 6 VSANKLEILAIANILAAEKQIDKMIVLEAMAEAIQKAARSRYGQEHDIHVHIDPKSGETT 65
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
+ R+ VVEEVE+ +SL+ AR+ DP+ +IG + LPP +FGRVA Q+AKQVI K
Sbjct: 66 ITRVQTVVEEVEDPAHHLSLEEAREIDPNAEIGTEFKEILPPFEFGRVAAQTAKQVITGK 125
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VR+AERDRQY EFKDK G+II+G VKRVE+GN+IVDLG +G+IRR++ + RENL PGDR
Sbjct: 126 VRDAERDRQYEEFKDKEGQIINGIVKRVEHGNIIVDLGRGEGIIRRNDGLPRENLNPGDR 185
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++ +Y V RE +GPQ+ LSR HP FMV LF EVPE+Y G++++KA SRDPGSRAK+ V
Sbjct: 186 VRAILYKVSREPKGPQLFLSRAHPTFMVALFSQEVPEVYEGVIEIKACSRDPGSRAKIGV 245
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S D+S+DPVGACVGMRG+RVQAVV+EL+ EKIDI+ WS D ATF++NAL+PA V+KVV+
Sbjct: 246 LSHDASVDPVGACVGMRGARVQAVVSELQGEKIDIIPWSEDEATFIVNALQPAEVSKVVV 305
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED R+EV+V + Q LAIGRRGQNVRLASQLTGW ID+ TE +DS RQK+F ER+
Sbjct: 306 DEDEERVEVVVEESQFPLAIGRRGQNVRLASQLTGWQIDLTTEAQDSERRQKEFQERSGL 365
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM+A++ DE++A LL +EGF ++EE+A V + + ASI+GFDE A E+Q RAREYLE +
Sbjct: 366 FMRALDADEMLAQLLASEGFENIEEIAYVDLEDFASIDGFDEAVASELQTRAREYLELLA 425
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK-GGN 480
+ KK ++LGV++E+ + G+ + V G++GIKT++DLAG DDL+GW E G
Sbjct: 426 AAMDKKRKDLGVTDEVAFMDGVTPVMAVRFGDDGIKTIDDLAGLVPDDLIGWKEPDAKGK 485
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGW 511
G L+ +D E I+ AR GW
Sbjct: 486 SRWQPGLLAKGEMTRDAAELFILRARVLAGW 516
>gi|317493625|ref|ZP_07952046.1| transcription termination factor NusA [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316918568|gb|EFV39906.1| transcription termination factor NusA [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 495
Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats.
Identities = 203/512 (39%), Positives = 315/512 (61%), Gaps = 19/512 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ +TGD FR
Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVCIDRKTGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+V+EV T +I+L A+ DP++ +G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WVIVDEVTQPTREITLDAAQFEDPALQLGEYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184
ER F+ GEI++G VK+V N+ +DLG N++ VI R++ + REN RPGDR++
Sbjct: 122 ERAMVVDAFRQHQGEIVTGVVKKVSRDNISLDLGSNAEAVIGREDMLPRENFRPGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+YDVR E RG Q+ +SR+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYDVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + F +
Sbjct: 302 KHTMDIAVEASNLAQAIGRNGQNVRLAAQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A LLV EGF+ +EELA V E+ +I+G DE+T ++ RA+ L + +
Sbjct: 362 YLDIDEDFATLLVEEGFSTLEELAYVPEQELLAIDGLDEDTVDALRERAKNALTTLALAQ 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + + +E+L ++ G+D I + G+ T+EDLA +DDL
Sbjct: 422 EESLGDQKPAEDLLALEGLDRGIAFKMAARGVCTLEDLAEQGIDDLADIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
G ++ +I+ AR + W +
Sbjct: 472 -------GLNSEKAGELIMAAR-NICWFGDSE 495
>gi|238755155|ref|ZP_04616501.1| Transcription termination factor NusA [Yersinia ruckeri ATCC 29473]
gi|238706602|gb|EEP98973.1| Transcription termination factor NusA [Yersinia ruckeri ATCC 29473]
Length = 495
Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats.
Identities = 201/510 (39%), Positives = 314/510 (61%), Gaps = 19/510 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR
Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
V+EV T +I+L+ A+ DPS +G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WVAVDEVTMPTREITLEAAQFEDPSTQLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F+ +GEI++GTVK+V ++ +DLGN+ + VI R++ + REN RPGDR++
Sbjct: 122 ERAMVVEQFRQYLGEIVTGTVKKVNRDSIALDLGNNAEAVIGREDMLPRENFRPGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+YDVR E RG Q+ +SR+ + +++LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYDVRPEARGAQLFVSRSRSEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F +
Sbjct: 302 RHTMDVAVEASNLAQAIGRNGQNVRLASQLSGWELNVMTADDLQAKHQAEAHAAIDTFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A +LV EGF+ +EELA V I E+ I+G DE+ ++ RA+ L + +
Sbjct: 362 HLDIDEDFATVLVEEGFSSLEELAYVPIKELLEIDGLDEDMVEALRDRAKAALTTLALAQ 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + + +++L ++ G++ + L G+ T+EDLA +DDL E
Sbjct: 422 EESLGDQKPADDLLNLEGLERSMAFKLAARGVCTLEDLAEQGIDDLADIEE--------- 472
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
+Q +I+ AR + W
Sbjct: 473 --------LSDEQAGELIMAAR-NICWFGD 493
>gi|156935695|ref|YP_001439611.1| transcription elongation factor NusA [Cronobacter sakazakii ATCC
BAA-894]
gi|156533949|gb|ABU78775.1| hypothetical protein ESA_03562 [Cronobacter sakazakii ATCC BAA-894]
Length = 495
Score = 489 bits (1258), Expect = e-136, Method: Composition-based stats.
Identities = 204/511 (39%), Positives = 316/511 (61%), Gaps = 19/511 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKAVPREKIFEALESALATATKKKYEQEIDVRVSIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+VEEV T +I+L+ AR DPS+++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WVIVEEVTQPTREITLEAARYEDPSLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184
ER +F++ GEII+G VK+V N+ +DLG N++ VI R++ + REN RPGDR++
Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRENITLDLGSNAEAVILREDMLPRENFRPGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y VR E RG Q+ ++R P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYAVRPEARGAQLFVTRAKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V L+ AIGR GQNVRLASQL+GW ++++T E+ Q + + F +
Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVEDLQAKHQAEAHAAIDTFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L + +
Sbjct: 362 YLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALTTLALAQ 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + + +++L ++ G+D + L G+ T++DLA VDDL
Sbjct: 422 EESLGDNKPADDLLNLEGMDRTLAYKLAARGVCTLDDLADQGVDDLADIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ +I+ AR + W E
Sbjct: 472 -------GLTDEKAGELIMAAR-NIRWFSDE 494
>gi|269137762|ref|YP_003294462.1| transcription elongation factor [Edwardsiella tarda EIB202]
gi|267983422|gb|ACY83251.1| transcription elongation factor [Edwardsiella tarda EIB202]
gi|304557819|gb|ADM40483.1| Transcription termination protein NusA [Edwardsiella tarda FL6-60]
Length = 495
Score = 488 bits (1256), Expect = e-135, Method: Composition-based stats.
Identities = 203/512 (39%), Positives = 316/512 (61%), Gaps = 19/512 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALETALATATKKKYEQEIDVRVAIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+V+EV T +I+L AR DP++D+G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLIVDEVTQPTREITLDAARFEDPALDLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER F++ GEI++G VK+V ++ +DLGN+ + VI R++ + REN RPGDR++
Sbjct: 122 ERAMVVDAFREHEGEIVTGVVKKVNRDSISLDLGNNAEAVIGREDMLPRENFRPGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++K +RDPGSRAK+AV ++
Sbjct: 182 VLYAVRPEARGAQLFVTRSRPEMLIELFRIEVPEIGEEVIEIKGAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V L+ AIGR GQNVRLASQL+GW ++++T E+ Q + + F +
Sbjct: 302 KHTMDIAVEASNLAQAIGRNGQNVRLASQLSGWELNVMTAEDLQAKHQAEAHAAIDTFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A LLV EGF+ +EELA V E+ SI+G DEET ++ RA+ L + +
Sbjct: 362 HLDIDEEFATLLVEEGFSTLEELAYVPERELLSIDGLDEETVEALRTRAKNALTTLALAQ 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + + +++L ++PG++ + L G+ T+EDLA VDDL
Sbjct: 422 EESLGDNKPADDLLNLPGMERSVAFKLAARGVCTLEDLAEQGVDDLTDIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
G +Q +I+ AR + W +
Sbjct: 472 -------GLNNEQAGELIMAAR-NICWFGDSE 495
>gi|218550454|ref|YP_002384245.1| transcription elongation factor NusA [Escherichia fergusonii ATCC
35469]
gi|218357995|emb|CAQ90641.1| transcription termination/antitermination L factor [Escherichia
fergusonii ATCC 35469]
gi|323966351|gb|EGB61785.1| transcription termination protein NusA [Escherichia coli M863]
gi|324115225|gb|EGC09189.1| transcription termination protein NusA [Escherichia fergusonii
B253]
gi|325498752|gb|EGC96611.1| transcription elongation factor NusA [Escherichia fergusonii
ECD227]
gi|327255185|gb|EGE66785.1| transcription elongation protein nusA [Escherichia coli STEC_7v]
Length = 495
Score = 488 bits (1256), Expect = e-135, Method: Composition-based stats.
Identities = 206/511 (40%), Positives = 317/511 (62%), Gaps = 19/511 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLVVDEVTQPTKEITLEAARFEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F++ GEII+G VK+V N+ +DLGN+ + VI R++ + REN RPGDRV+
Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F +
Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I
Sbjct: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQ 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + + +++L ++ GID + L G+ T+EDLA +DDL
Sbjct: 422 EESLGDNKPADDLLNLEGIDRDLAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ ++I+ AR + W E
Sbjct: 472 -------GLTDEKAGALIMAAR-NICWFGDE 494
>gi|103486103|ref|YP_615664.1| transcription elongation factor NusA [Sphingopyxis alaskensis
RB2256]
gi|98976180|gb|ABF52331.1| NusA antitermination factor [Sphingopyxis alaskensis RB2256]
Length = 548
Score = 488 bits (1256), Expect = e-135, Method: Composition-based stats.
Identities = 284/532 (53%), Positives = 382/532 (71%), Gaps = 9/532 (1%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
+SAN+ ELL IA++VA EK ID+ +V+ + ++IQ+AAR+ YG +DIR +++P+TGD+
Sbjct: 5 ISANKAELLAIANSVASEKMIDKAIVIEAIEEAIQRAARARYGAENDIRAKLDPQTGDLR 64
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L+R++EVVE VE+Y Q+ L + IG + DPLP +D GR+ QSAKQVI QK
Sbjct: 65 LWRVVEVVETVEDYFKQVDLAAGQKLQKDARIGDFIVDPLPAVDLGRIDAQSAKQVIFQK 124
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREA+R+RQY EFKD+ GEII+G VK VE+G+++V+LG ++GVIRRD+ I RE +R GDR
Sbjct: 125 VREADRERQYQEFKDRAGEIITGVVKSVEFGHIVVNLGRAEGVIRRDQQIPRELMRVGDR 184
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++ I VR E RGPQ+ LSR HP FM KLF EVPEIY+GI+++KA +RDPGSRAK+ V
Sbjct: 185 VRALILSVRSETRGPQIFLSRAHPDFMKKLFAQEVPEIYDGIIEIKAAARDPGSRAKIGV 244
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S DSSIDPVGACVGM+GSRVQAVV EL+ EKIDI+ WS D+ATFV+NAL+PA V +VV+
Sbjct: 245 ISYDSSIDPVGACVGMKGSRVQAVVQELQGEKIDIIPWSEDTATFVVNALQPATVQRVVI 304
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED GRIEV+VP +QLSLAIGRRGQNVRLASQLTG IDI+TE + S RQ++F ER+
Sbjct: 305 DEDDGRIEVVVPDDQLSLAIGRRGQNVRLASQLTGKQIDIMTEADASEKRQREFVERSTM 364
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F + ++VDE +A LLVAEGF+++EE+A V + E+ASIEGFDEE A E+Q RA E LE +
Sbjct: 365 FQEELDVDETLAQLLVAEGFSELEEVAYVPLDELASIEGFDEELAQELQSRAAEGLERRE 424
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSEN----- 476
+ + RELGV + L IP + + V LG+ GI+T++DLA + D+L+
Sbjct: 425 EAARAERRELGVEDALADIPHLTEAMLVTLGKAGIRTLDDLADLATDELIAKKRTDNRRG 484
Query: 477 --KGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDAS 526
+ E G L G ++Q +I+ AR W + E+ ++ A+
Sbjct: 485 PARSERAEDKGGVLGEYGLSEEQGNEIIMAARAH--WFDDEESSEPATAPAA 534
>gi|15803711|ref|NP_289745.1| transcription elongation factor NusA [Escherichia coli O157:H7
EDL933]
gi|15833304|ref|NP_312077.1| transcription elongation factor NusA [Escherichia coli O157:H7 str.
Sakai]
gi|16131061|ref|NP_417638.1| transcription termination/antitermination L factor [Escherichia
coli str. K-12 substr. MG1655]
gi|24114460|ref|NP_708970.1| transcription elongation factor NusA [Shigella flexneri 2a str.
301]
gi|26249753|ref|NP_755793.1| transcription elongation factor NusA [Escherichia coli CFT073]
gi|30064509|ref|NP_838680.1| transcription elongation factor NusA [Shigella flexneri 2a str.
2457T]
gi|74313706|ref|YP_312125.1| transcription elongation factor NusA [Shigella sonnei Ss046]
gi|89109934|ref|AP_003714.1| transcription termination/antitermination L factor [Escherichia
coli str. K-12 substr. W3110]
gi|91212591|ref|YP_542577.1| transcription elongation factor NusA [Escherichia coli UTI89]
gi|117625465|ref|YP_858788.1| transcription elongation factor NusA [Escherichia coli APEC O1]
gi|157155683|ref|YP_001464646.1| transcription elongation factor NusA [Escherichia coli E24377A]
gi|157162654|ref|YP_001459972.1| transcription elongation factor NusA [Escherichia coli HS]
gi|168762136|ref|ZP_02787143.1| transcription termination/antitermination factor NusA [Escherichia
coli O157:H7 str. EC4501]
gi|168786054|ref|ZP_02811061.1| transcription termination/antitermination factor NusA [Escherichia
coli O157:H7 str. EC869]
gi|168797770|ref|ZP_02822777.1| transcription termination/antitermination factor NusA [Escherichia
coli O157:H7 str. EC508]
gi|170018579|ref|YP_001723533.1| transcription elongation factor NusA [Escherichia coli ATCC 8739]
gi|170082706|ref|YP_001732026.1| transcription termination/antitermination L factor [Escherichia
coli str. K-12 substr. DH10B]
gi|188492867|ref|ZP_03000137.1| transcription termination/antitermination factor NusA [Escherichia
coli 53638]
gi|191172236|ref|ZP_03033779.1| transcription termination/antitermination factor NusA [Escherichia
coli F11]
gi|193062170|ref|ZP_03043266.1| transcription termination/antitermination factor NusA [Escherichia
coli E22]
gi|194433789|ref|ZP_03066064.1| transcription termination/antitermination factor NusA [Shigella
dysenteriae 1012]
gi|215488487|ref|YP_002330918.1| transcription elongation factor NusA [Escherichia coli O127:H6 str.
E2348/69]
gi|217326723|ref|ZP_03442806.1| transcription termination/antitermination factor NusA [Escherichia
coli O157:H7 str. TW14588]
gi|218555741|ref|YP_002388654.1| transcription elongation factor NusA [Escherichia coli IAI1]
gi|218560241|ref|YP_002393154.1| transcription elongation factor NusA [Escherichia coli S88]
gi|218691461|ref|YP_002399673.1| transcription elongation factor NusA [Escherichia coli ED1a]
gi|218696876|ref|YP_002404543.1| transcription elongation factor NusA [Escherichia coli 55989]
gi|227887892|ref|ZP_04005697.1| N utilization substance A [Escherichia coli 83972]
gi|237706078|ref|ZP_04536559.1| transcription termination/antitermination factor NusA [Escherichia
sp. 3_2_53FAA]
gi|238902273|ref|YP_002928069.1| transcription termination/antitermination L factor [Escherichia
coli BW2952]
gi|253771995|ref|YP_003034826.1| transcription elongation factor NusA [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254038335|ref|ZP_04872393.1| transcription termination/antitermination factor NusA [Escherichia
sp. 1_1_43]
gi|254163113|ref|YP_003046221.1| transcription elongation factor NusA [Escherichia coli B str.
REL606]
gi|256018911|ref|ZP_05432776.1| transcription elongation factor NusA [Shigella sp. D9]
gi|256024255|ref|ZP_05438120.1| transcription elongation factor NusA [Escherichia sp. 4_1_40B]
gi|260845984|ref|YP_003223762.1| transcription termination/antitermination L factor NusA
[Escherichia coli O103:H2 str. 12009]
gi|261228181|ref|ZP_05942462.1| transcription elongation factor NusA [Escherichia coli O157:H7 str.
FRIK2000]
gi|261255037|ref|ZP_05947570.1| transcription termination/antitermination L factor NusA
[Escherichia coli O157:H7 str. FRIK966]
gi|291284545|ref|YP_003501363.1| Transcription elongation protein nusA [Escherichia coli O55:H7 str.
CB9615]
gi|293416602|ref|ZP_06659241.1| transcription elongation protein nusA [Escherichia coli B185]
gi|293449505|ref|ZP_06663926.1| transcription elongation protein nusA [Escherichia coli B088]
gi|300817579|ref|ZP_07097795.1| transcription termination factor NusA [Escherichia coli MS 107-1]
gi|300823868|ref|ZP_07103992.1| transcription termination factor NusA [Escherichia coli MS 119-7]
gi|300904355|ref|ZP_07122208.1| transcription termination factor NusA [Escherichia coli MS 84-1]
gi|300918924|ref|ZP_07135483.1| transcription termination factor NusA [Escherichia coli MS 115-1]
gi|300926092|ref|ZP_07141910.1| transcription termination factor NusA [Escherichia coli MS 182-1]
gi|300929859|ref|ZP_07145305.1| transcription termination factor NusA [Escherichia coli MS 187-1]
gi|300948819|ref|ZP_07162887.1| transcription termination factor NusA [Escherichia coli MS 116-1]
gi|300955755|ref|ZP_07168100.1| transcription termination factor NusA [Escherichia coli MS 175-1]
gi|300977836|ref|ZP_07174076.1| transcription termination factor NusA [Escherichia coli MS 200-1]
gi|300990769|ref|ZP_07179341.1| transcription termination factor NusA [Escherichia coli MS 45-1]
gi|301025986|ref|ZP_07189468.1| transcription termination factor NusA [Escherichia coli MS 196-1]
gi|301047988|ref|ZP_07195030.1| transcription termination factor NusA [Escherichia coli MS 185-1]
gi|301301775|ref|ZP_07207909.1| transcription termination factor NusA [Escherichia coli MS 124-1]
gi|301326408|ref|ZP_07219762.1| transcription termination factor NusA [Escherichia coli MS 78-1]
gi|301644880|ref|ZP_07244852.1| transcription termination factor NusA [Escherichia coli MS 146-1]
gi|306816487|ref|ZP_07450619.1| transcription elongation factor NusA [Escherichia coli NC101]
gi|307139856|ref|ZP_07499212.1| transcription elongation factor NusA [Escherichia coli H736]
gi|307313124|ref|ZP_07592750.1| transcription termination factor NusA [Escherichia coli W]
gi|312968492|ref|ZP_07782701.1| transcription elongation protein nusA [Escherichia coli 2362-75]
gi|331643869|ref|ZP_08345000.1| L factor [Escherichia coli H736]
gi|331648970|ref|ZP_08350058.1| L factor [Escherichia coli M605]
gi|331654775|ref|ZP_08355775.1| L factor [Escherichia coli M718]
gi|331659458|ref|ZP_08360400.1| L factor [Escherichia coli TA206]
gi|331669998|ref|ZP_08370843.1| L factor [Escherichia coli TA271]
gi|331674707|ref|ZP_08375466.1| L factor [Escherichia coli TA280]
gi|331679250|ref|ZP_08379922.1| L factor [Escherichia coli H591]
gi|331684818|ref|ZP_08385410.1| L factor [Escherichia coli H299]
gi|332280000|ref|ZP_08392413.1| transcription pausing [Shigella sp. D9]
gi|84028773|sp|P0AFF8|NUSA_ECO57 RecName: Full=Transcription elongation protein nusA; AltName:
Full=L factor; AltName: Full=N utilization substance
protein A
gi|84028774|sp|P0AFF7|NUSA_ECOL6 RecName: Full=Transcription elongation protein nusA; AltName:
Full=L factor; AltName: Full=N utilization substance
protein A
gi|84028775|sp|P0AFF6|NUSA_ECOLI RecName: Full=Transcription elongation protein nusA; AltName:
Full=L factor; AltName: Full=N utilization substance
protein A
gi|84028776|sp|P0AFF9|NUSA_SHIFL RecName: Full=Transcription elongation protein nusA; AltName:
Full=L factor; AltName: Full=N utilization substance
protein A
gi|12517780|gb|AAG58305.1|AE005545_7 transcription pausing; L factor [Escherichia coli O157:H7 str.
EDL933]
gi|26110181|gb|AAN82367.1|AE016767_127 N utilization substance protein A [Escherichia coli CFT073]
gi|606109|gb|AAA57972.1| L factor [Escherichia coli str. K-12 substr. MG1655]
gi|1789560|gb|AAC76203.1| transcription termination/antitermination L factor [Escherichia
coli str. K-12 substr. MG1655]
gi|13363523|dbj|BAB37473.1| transcription termination-antitermination factor NusA [Escherichia
coli O157:H7 str. Sakai]
gi|24053641|gb|AAN44677.1| transcription pausing; L factor [Shigella flexneri 2a str. 301]
gi|30042768|gb|AAP18491.1| transcription pausing; L factor [Shigella flexneri 2a str. 2457T]
gi|73857183|gb|AAZ89890.1| transcription pausing; L factor [Shigella sonnei Ss046]
gi|85675965|dbj|BAE77215.1| transcription termination/antitermination L factor [Escherichia
coli str. K12 substr. W3110]
gi|91074165|gb|ABE09046.1| transcription pausing; L factor [Escherichia coli UTI89]
gi|115514589|gb|ABJ02664.1| transcription elongation factor NusA [Escherichia coli APEC O1]
gi|157068334|gb|ABV07589.1| transcription termination/antitermination factor NusA [Escherichia
coli HS]
gi|157077713|gb|ABV17421.1| transcription termination/antitermination factor NusA [Escherichia
coli E24377A]
gi|169753507|gb|ACA76206.1| NusA antitermination factor [Escherichia coli ATCC 8739]
gi|169890541|gb|ACB04248.1| transcription termination/antitermination L factor [Escherichia
coli str. K-12 substr. DH10B]
gi|188488066|gb|EDU63169.1| transcription termination/antitermination factor NusA [Escherichia
coli 53638]
gi|189367615|gb|EDU86031.1| transcription termination/antitermination factor NusA [Escherichia
coli O157:H7 str. EC4501]
gi|189374081|gb|EDU92497.1| transcription termination/antitermination factor NusA [Escherichia
coli O157:H7 str. EC869]
gi|189379809|gb|EDU98225.1| transcription termination/antitermination factor NusA [Escherichia
coli O157:H7 str. EC508]
gi|190907546|gb|EDV67142.1| transcription termination/antitermination factor NusA [Escherichia
coli F11]
gi|192932390|gb|EDV84988.1| transcription termination/antitermination factor NusA [Escherichia
coli E22]
gi|194418052|gb|EDX34146.1| transcription termination/antitermination factor NusA [Shigella
dysenteriae 1012]
gi|209758328|gb|ACI77476.1| transcription termination-antitermination factor NusA [Escherichia
coli]
gi|209758330|gb|ACI77477.1| transcription termination-antitermination factor NusA [Escherichia
coli]
gi|209758332|gb|ACI77478.1| transcription termination-antitermination factor NusA [Escherichia
coli]
gi|209758334|gb|ACI77479.1| transcription termination-antitermination factor NusA [Escherichia
coli]
gi|215266559|emb|CAS10998.1| transcription termination/antitermination L factor [Escherichia
coli O127:H6 str. E2348/69]
gi|217319090|gb|EEC27515.1| transcription termination/antitermination factor NusA [Escherichia
coli O157:H7 str. TW14588]
gi|218353608|emb|CAU99800.1| transcription termination/antitermination L factor [Escherichia
coli 55989]
gi|218362509|emb|CAR00133.1| transcription termination/antitermination L factor [Escherichia
coli IAI1]
gi|218367010|emb|CAR04781.1| transcription termination/antitermination L factor [Escherichia
coli S88]
gi|218429025|emb|CAR09972.2| transcription termination/antitermination L factor [Escherichia
coli ED1a]
gi|222034888|emb|CAP77631.1| Transcription elongation protein nusA [Escherichia coli LF82]
gi|226839959|gb|EEH71980.1| transcription termination/antitermination factor NusA [Escherichia
sp. 1_1_43]
gi|226899118|gb|EEH85377.1| transcription termination/antitermination factor NusA [Escherichia
sp. 3_2_53FAA]
gi|227835288|gb|EEJ45754.1| N utilization substance A [Escherichia coli 83972]
gi|238863681|gb|ACR65679.1| transcription termination/antitermination L factor [Escherichia
coli BW2952]
gi|242378714|emb|CAQ33504.1| transcription termination/antitermination L factor [Escherichia
coli BL21(DE3)]
gi|253323039|gb|ACT27641.1| NusA antitermination factor [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|253975014|gb|ACT40685.1| transcription elongation factor NusA [Escherichia coli B str.
REL606]
gi|253979170|gb|ACT44840.1| transcription elongation factor NusA [Escherichia coli BL21(DE3)]
gi|257761131|dbj|BAI32628.1| transcription termination/antitermination L factor NusA
[Escherichia coli O103:H2 str. 12009]
gi|260447802|gb|ACX38224.1| NusA antitermination factor [Escherichia coli DH1]
gi|281180213|dbj|BAI56543.1| N utilization substance protein A [Escherichia coli SE15]
gi|281602553|gb|ADA75537.1| Transcription elongation protein nusA [Shigella flexneri 2002017]
gi|290764418|gb|ADD58379.1| Transcription elongation protein nusA [Escherichia coli O55:H7 str.
CB9615]
gi|291322595|gb|EFE62024.1| transcription elongation protein nusA [Escherichia coli B088]
gi|291431958|gb|EFF04941.1| transcription elongation protein nusA [Escherichia coli B185]
gi|294490229|gb|ADE88985.1| transcription termination/antitermination factor NusA [Escherichia
coli IHE3034]
gi|299879881|gb|EFI88092.1| transcription termination factor NusA [Escherichia coli MS 196-1]
gi|300300131|gb|EFJ56516.1| transcription termination factor NusA [Escherichia coli MS 185-1]
gi|300308213|gb|EFJ62733.1| transcription termination factor NusA [Escherichia coli MS 200-1]
gi|300317388|gb|EFJ67172.1| transcription termination factor NusA [Escherichia coli MS 175-1]
gi|300403706|gb|EFJ87244.1| transcription termination factor NusA [Escherichia coli MS 84-1]
gi|300407077|gb|EFJ90615.1| transcription termination factor NusA [Escherichia coli MS 45-1]
gi|300413950|gb|EFJ97260.1| transcription termination factor NusA [Escherichia coli MS 115-1]
gi|300417857|gb|EFK01168.1| transcription termination factor NusA [Escherichia coli MS 182-1]
gi|300451708|gb|EFK15328.1| transcription termination factor NusA [Escherichia coli MS 116-1]
gi|300462221|gb|EFK25714.1| transcription termination factor NusA [Escherichia coli MS 187-1]
gi|300523636|gb|EFK44705.1| transcription termination factor NusA [Escherichia coli MS 119-7]
gi|300529877|gb|EFK50939.1| transcription termination factor NusA [Escherichia coli MS 107-1]
gi|300842756|gb|EFK70516.1| transcription termination factor NusA [Escherichia coli MS 124-1]
gi|300846897|gb|EFK74657.1| transcription termination factor NusA [Escherichia coli MS 78-1]
gi|301076825|gb|EFK91631.1| transcription termination factor NusA [Escherichia coli MS 146-1]
gi|305850052|gb|EFM50511.1| transcription elongation factor NusA [Escherichia coli NC101]
gi|306907035|gb|EFN37543.1| transcription termination factor NusA [Escherichia coli W]
gi|307555265|gb|ADN48040.1| transcription pausing [Escherichia coli ABU 83972]
gi|307625230|gb|ADN69534.1| transcription elongation factor NusA [Escherichia coli UM146]
gi|309703597|emb|CBJ02937.1| transcription elongation protein [Escherichia coli ETEC H10407]
gi|312286710|gb|EFR14621.1| transcription elongation protein nusA [Escherichia coli 2362-75]
gi|312947728|gb|ADR28555.1| transcription elongation factor NusA [Escherichia coli O83:H1 str.
NRG 857C]
gi|313648589|gb|EFS13031.1| transcription elongation protein nusA [Shigella flexneri 2a str.
2457T]
gi|315062477|gb|ADT76804.1| transcription termination/antitermination L factor [Escherichia
coli W]
gi|315137757|dbj|BAJ44916.1| transcription elongation protein nusA [Escherichia coli DH1]
gi|315257095|gb|EFU37063.1| transcription termination factor NusA [Escherichia coli MS 85-1]
gi|315297879|gb|EFU57149.1| transcription termination factor NusA [Escherichia coli MS 16-3]
gi|315617252|gb|EFU97861.1| transcription elongation protein nusA [Escherichia coli 3431]
gi|320181445|gb|EFW56363.1| Transcription termination protein NusA [Shigella boydii ATCC 9905]
gi|320189523|gb|EFW64182.1| Transcription termination protein NusA [Escherichia coli O157:H7
str. EC1212]
gi|320194655|gb|EFW69285.1| Transcription termination protein NusA [Escherichia coli WV_060327]
gi|320202083|gb|EFW76658.1| Transcription termination protein NusA [Escherichia coli EC4100B]
gi|320640241|gb|EFX09813.1| transcription elongation factor NusA [Escherichia coli O157:H7 str.
G5101]
gi|320645538|gb|EFX14547.1| transcription elongation factor NusA [Escherichia coli O157:H- str.
493-89]
gi|320650848|gb|EFX19305.1| transcription elongation factor NusA [Escherichia coli O157:H- str.
H 2687]
gi|320656229|gb|EFX24141.1| transcription elongation factor NusA [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320661919|gb|EFX29327.1| transcription elongation factor NusA [Escherichia coli O55:H7 str.
USDA 5905]
gi|320666754|gb|EFX33733.1| transcription elongation factor NusA [Escherichia coli O157:H7 str.
LSU-61]
gi|323162863|gb|EFZ48698.1| transcription elongation protein nusA [Escherichia coli E128010]
gi|323165127|gb|EFZ50917.1| transcription elongation protein nusA [Shigella sonnei 53G]
gi|323189208|gb|EFZ74492.1| transcription elongation protein nusA [Escherichia coli RN587/1]
gi|323376935|gb|ADX49203.1| NusA antitermination factor [Escherichia coli KO11]
gi|323936135|gb|EGB32429.1| transcription termination protein NusA [Escherichia coli E1520]
gi|323941729|gb|EGB37908.1| transcription termination protein NusA [Escherichia coli E482]
gi|323946975|gb|EGB42991.1| transcription termination protein NusA [Escherichia coli H120]
gi|323951311|gb|EGB47186.1| transcription termination protein NusA [Escherichia coli H252]
gi|323957682|gb|EGB53396.1| transcription termination protein NusA [Escherichia coli H263]
gi|323961059|gb|EGB56674.1| transcription termination protein NusA [Escherichia coli H489]
gi|323970266|gb|EGB65537.1| transcription termination protein NusA [Escherichia coli TA007]
gi|324012105|gb|EGB81324.1| transcription termination factor NusA [Escherichia coli MS 60-1]
gi|324119536|gb|EGC13418.1| transcription termination protein NusA [Escherichia coli E1167]
gi|326337871|gb|EGD61705.1| Transcription termination protein NusA [Escherichia coli O157:H7
str. 1125]
gi|326347440|gb|EGD71165.1| Transcription termination protein NusA [Escherichia coli O157:H7
str. 1044]
gi|330909225|gb|EGH37739.1| transcription termination protein NusA [Escherichia coli AA86]
gi|331037340|gb|EGI09564.1| L factor [Escherichia coli H736]
gi|331042717|gb|EGI14859.1| L factor [Escherichia coli M605]
gi|331048157|gb|EGI20234.1| L factor [Escherichia coli M718]
gi|331054040|gb|EGI26069.1| L factor [Escherichia coli TA206]
gi|331062911|gb|EGI34825.1| L factor [Escherichia coli TA271]
gi|331068146|gb|EGI39542.1| L factor [Escherichia coli TA280]
gi|331073315|gb|EGI44638.1| L factor [Escherichia coli H591]
gi|331078433|gb|EGI49639.1| L factor [Escherichia coli H299]
gi|332086099|gb|EGI91261.1| transcription elongation protein nusA [Shigella boydii 5216-82]
gi|332086431|gb|EGI91578.1| transcription elongation protein nusA [Shigella dysenteriae 155-74]
gi|332102352|gb|EGJ05698.1| transcription pausing [Shigella sp. D9]
gi|332345126|gb|AEE58460.1| transcription elongation protein NusA [Escherichia coli UMNK88]
gi|332752329|gb|EGJ82719.1| transcription elongation protein nusA [Shigella flexneri 4343-70]
gi|332752856|gb|EGJ83241.1| transcription elongation protein nusA [Shigella flexneri K-671]
gi|332754694|gb|EGJ85060.1| transcription elongation protein nusA [Shigella flexneri 2747-71]
gi|332765166|gb|EGJ95393.1| transcription termination/antitermination L factor [Shigella
flexneri 2930-71]
gi|332998811|gb|EGK18407.1| transcription elongation protein nusA [Shigella flexneri VA-6]
gi|332999248|gb|EGK18834.1| transcription elongation protein nusA [Shigella flexneri K-272]
gi|333014625|gb|EGK33972.1| transcription elongation protein nusA [Shigella flexneri K-304]
gi|333014970|gb|EGK34314.1| transcription elongation protein nusA [Shigella flexneri K-227]
Length = 495
Score = 488 bits (1256), Expect = e-135, Method: Composition-based stats.
Identities = 205/511 (40%), Positives = 317/511 (62%), Gaps = 19/511 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F++ GEII+G VK+V N+ +DLGN+ + VI R++ + REN RPGDRV+
Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F +
Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I
Sbjct: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQ 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + + +++L ++ G+D + L G+ T+EDLA +DDL
Sbjct: 422 EESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ ++I+ AR + W E
Sbjct: 472 -------GLTDEKAGALIMAAR-NICWFGDE 494
>gi|170680571|ref|YP_001745443.1| transcription elongation factor NusA [Escherichia coli SMS-3-5]
gi|191168053|ref|ZP_03029853.1| transcription termination/antitermination factor NusA [Escherichia
coli B7A]
gi|193067419|ref|ZP_03048387.1| transcription termination/antitermination factor NusA [Escherichia
coli E110019]
gi|209920646|ref|YP_002294730.1| transcription elongation factor NusA [Escherichia coli SE11]
gi|218701940|ref|YP_002409569.1| transcription elongation factor NusA [Escherichia coli IAI39]
gi|218706791|ref|YP_002414310.1| transcription elongation factor NusA [Escherichia coli UMN026]
gi|260857298|ref|YP_003231189.1| transcription termination/antitermination L factor NusA
[Escherichia coli O26:H11 str. 11368]
gi|260869921|ref|YP_003236323.1| transcription termination/antitermination L factor NusA
[Escherichia coli O111:H- str. 11128]
gi|293406780|ref|ZP_06650706.1| nusA [Escherichia coli FVEC1412]
gi|293412544|ref|ZP_06655267.1| nusA [Escherichia coli B354]
gi|298382521|ref|ZP_06992118.1| N utilization substance protein A [Escherichia coli FVEC1302]
gi|300897933|ref|ZP_07116312.1| transcription termination factor NusA [Escherichia coli MS 198-1]
gi|300938079|ref|ZP_07152857.1| transcription termination factor NusA [Escherichia coli MS 21-1]
gi|301022024|ref|ZP_07185967.1| transcription termination factor NusA [Escherichia coli MS 69-1]
gi|309793747|ref|ZP_07688173.1| transcription termination factor NusA [Escherichia coli MS 145-7]
gi|331664783|ref|ZP_08365688.1| L factor [Escherichia coli TA143]
gi|170518289|gb|ACB16467.1| transcription termination/antitermination factor NusA [Escherichia
coli SMS-3-5]
gi|190901922|gb|EDV61671.1| transcription termination/antitermination factor NusA [Escherichia
coli B7A]
gi|192959376|gb|EDV89811.1| transcription termination/antitermination factor NusA [Escherichia
coli E110019]
gi|209913905|dbj|BAG78979.1| N utilization substance protein A [Escherichia coli SE11]
gi|218371926|emb|CAR19782.1| transcription termination/antitermination L factor [Escherichia
coli IAI39]
gi|218433888|emb|CAR14805.1| transcription termination/antitermination L factor [Escherichia
coli UMN026]
gi|257755947|dbj|BAI27449.1| transcription termination/antitermination L factor NusA
[Escherichia coli O26:H11 str. 11368]
gi|257766277|dbj|BAI37772.1| transcription termination/antitermination L factor NusA
[Escherichia coli O111:H- str. 11128]
gi|284923193|emb|CBG36287.1| transcription elongation protein [Escherichia coli 042]
gi|291426786|gb|EFE99818.1| nusA [Escherichia coli FVEC1412]
gi|291469315|gb|EFF11806.1| nusA [Escherichia coli B354]
gi|298277661|gb|EFI19177.1| N utilization substance protein A [Escherichia coli FVEC1302]
gi|300358363|gb|EFJ74233.1| transcription termination factor NusA [Escherichia coli MS 198-1]
gi|300397739|gb|EFJ81277.1| transcription termination factor NusA [Escherichia coli MS 69-1]
gi|300456939|gb|EFK20432.1| transcription termination factor NusA [Escherichia coli MS 21-1]
gi|308122704|gb|EFO59966.1| transcription termination factor NusA [Escherichia coli MS 145-7]
gi|323154383|gb|EFZ40584.1| transcription elongation protein nusA [Escherichia coli EPECa14]
gi|323178882|gb|EFZ64458.1| transcription elongation protein nusA [Escherichia coli 1180]
gi|323183124|gb|EFZ68522.1| transcription elongation protein nusA [Escherichia coli 1357]
gi|324008768|gb|EGB77987.1| transcription termination factor NusA [Escherichia coli MS 57-2]
gi|324018307|gb|EGB87526.1| transcription termination factor NusA [Escherichia coli MS 117-3]
gi|331058031|gb|EGI30013.1| L factor [Escherichia coli TA143]
Length = 495
Score = 488 bits (1256), Expect = e-135, Method: Composition-based stats.
Identities = 206/511 (40%), Positives = 317/511 (62%), Gaps = 19/511 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F++ GEII+G VK+V N+ +DLGN+ + VI R++ + REN RPGDRV+
Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F +
Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I
Sbjct: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQ 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + + +++L ++ GID + L G+ T+EDLA +DDL
Sbjct: 422 EESLGDNKPADDLLNLEGIDRDLAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ ++I+ AR + W E
Sbjct: 472 -------GLTDEKAGALIMAAR-NICWFGDE 494
>gi|296114401|ref|ZP_06833055.1| transcription elongation factor NusA [Gluconacetobacter hansenii
ATCC 23769]
gi|295979162|gb|EFG85886.1| transcription elongation factor NusA [Gluconacetobacter hansenii
ATCC 23769]
Length = 516
Score = 488 bits (1256), Expect = e-135, Method: Composition-based stats.
Identities = 287/524 (54%), Positives = 376/524 (71%), Gaps = 16/524 (3%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
S +R ELL +ADAVA EKSIDR+ VL M +IQKA R+ YG DIR I+ +TGD+
Sbjct: 3 TSVSRPELLLVADAVAREKSIDREEVLEAMEQAIQKAGRAKYGHEKDIRATIDRKTGDVR 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L R E VEEVEN QI L +AR P I +G + DPLPP+DFGR+A Q+AKQVI+Q+
Sbjct: 63 LSRWTEAVEEVENEETQIPLHIARKFRPEIQLGEHLIDPLPPIDFGRIAAQTAKQVIVQR 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VRE ER RQY +FKD+VGEI++GTVKR EYGN++V++G+S+ ++RRDE I RE+ R DR
Sbjct: 123 VREYERKRQYNDFKDRVGEIVNGTVKRTEYGNLMVEIGSSEALLRRDELIPRESFRNSDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++YIYDVR E RGPQ+ LSRTHP F+ KLF EVPEIY+GI+++KAV+RDPGSRAK+AV
Sbjct: 183 VRAYIYDVRDEPRGPQIFLSRTHPAFLAKLFAQEVPEIYDGIIEIKAVARDPGSRAKMAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSP +ATFV+NAL PA V+KVV+
Sbjct: 243 ISRDASIDPVGACVGMRGSRVQAVVQELQGEKIDIIPWSPQAATFVVNALAPAEVSKVVM 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DE+ GR+EV+VP EQLSLAIGRRGQNVRLASQLT W IDI+TE E+S RQ++F R+
Sbjct: 303 DEEAGRVEVVVPDEQLSLAIGRRGQNVRLASQLTRWDIDILTEAEESERRQEEFRRRSNQ 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F++A++VD++IA LLV EGF +EELA E+A IEGFDE+ A E+ RA +L +
Sbjct: 363 FVEALDVDDVIAGLLVTEGFHSIEELAFADADELAGIEGFDEDVASELVRRAEGFLARRE 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ +K R LGVS+++ ++ ++ V LGE G+KT++DLA + D+L+
Sbjct: 423 EEMDEKRRALGVSDDIAALGVFTVQMLVTLGEKGVKTLDDLADLAGDELVDI-------- 474
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525
L ++ +I+ AR W E ++ +E +
Sbjct: 475 ------LGGDAIDEEAANEIIMAARAH--WFEGDESGADEAPEQ 510
>gi|56460077|ref|YP_155358.1| transcription elongation factor NusA [Idiomarina loihiensis L2TR]
gi|56179087|gb|AAV81809.1| Transcription elongation factor NusA [Idiomarina loihiensis L2TR]
Length = 499
Score = 488 bits (1256), Expect = e-135, Method: Composition-based stats.
Identities = 205/514 (39%), Positives = 324/514 (63%), Gaps = 23/514 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L +A+AV+ EK++ R+ + + ++ A + Y ++R++I+ TG+ FR
Sbjct: 4 EILLVAEAVSNEKAVPREKIFEALESALAHATKKKYDGDIEVRIDIDRTTGEFDTFRRWL 63
Query: 68 VVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
VVE+ +E+ +ISL A+ DPS+ G V + + + F R+ Q+AKQVI+QKVR
Sbjct: 64 VVEDTDSGLEHPYREISLSAAQYEDPSVQAGDYVEEQIDSIQFDRITTQTAKQVIVQKVR 123
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182
EAER + E++++VGE++SG VKR +VI+DLGN+ + +I RDE + RE++RPGDR+
Sbjct: 124 EAERAQVVDEYREQVGEMVSGIVKRANREHVILDLGNNAEAIIYRDEMLPRESVRPGDRI 183
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
+ +YDVR E RG Q+ +SRT+P F+++LF +EVPEI +++++ +RDPGSRAK+AV
Sbjct: 184 RGLLYDVRPEARGAQLFVSRTNPNFLLELFRIEVPEIGEEMIELRGAARDPGSRAKIAVK 243
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
S+D IDPVGACVGMRG+RVQAV EL E++DIV+W + A +VINA+ PA V +V+D
Sbjct: 244 SNDKRIDPVGACVGMRGARVQAVSGELGGERVDIVLWDDNPAQYVINAMAPAEVASIVVD 303
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
ED +++ V + L+ AIG+ GQNVRLASQLTGWT++++TE+E + + + F
Sbjct: 304 EDAHTMDIAVAADNLAQAIGKGGQNVRLASQLTGWTLNVMTEDEFNEKNEAETQRLLNLF 363
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
+ +++DE A++LV EGF+ +EE+A V ++E IEG DE+ E++ RAR YL +
Sbjct: 364 VSTLDIDEDFANVLVDEGFSSLEEVAYVPVAEFLDIEGMDEDIVEELRSRARAYLTTKAL 423
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482
++ + + L ++ G++ + L G+ T+E+LA VDDL E
Sbjct: 424 ATEESLESAEPDDTLLNLEGMERHLAYVLASKGVTTLEELAEQGVDDLADIEE------- 476
Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
+ Q +I+ AR + W +E+
Sbjct: 477 ----------LNEQQAGDLIMKAR-NICWFNEEQ 499
>gi|238918423|ref|YP_002931937.1| transcription elongation factor NusA [Edwardsiella ictaluri 93-146]
gi|238867991|gb|ACR67702.1| transcription elongation factor NusA, putative [Edwardsiella
ictaluri 93-146]
Length = 495
Score = 487 bits (1255), Expect = e-135, Method: Composition-based stats.
Identities = 203/512 (39%), Positives = 316/512 (61%), Gaps = 19/512 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALETALATATKKKYEQEIDVRVAIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+VEEV T +I+L AR DP++D+G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLIVEEVTQPTREITLDAARFEDPALDLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER F++ GEI++G VK+V ++ +DLGN+ + VI R++ + REN RPGDR++
Sbjct: 122 ERAMVVDAFREHEGEIVTGVVKKVNRDSISLDLGNNAEAVIGREDMLPRENFRPGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++K +RDPGSRAK+AV ++
Sbjct: 182 VLYAVRPEARGAQLFVTRSRPEMLIELFRIEVPEIGEEVIEIKGAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V L+ AIGR GQNVRLASQL+GW ++++T E+ Q + + F +
Sbjct: 302 KHTMDIAVEASNLAQAIGRNGQNVRLASQLSGWELNVMTAEDLQAKHQAEAHAAIDTFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A LLV EGF+ +EELA V E+ SI+G DE+T ++ RA+ L + +
Sbjct: 362 HLDIDEEFATLLVEEGFSSLEELAYVPERELLSIDGLDEDTVEVLRTRAKNALTTLALAQ 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + + +++L ++PG++ + L G+ T+EDLA VDDL
Sbjct: 422 EESLGDNKPADDLLNLPGMERSVAFKLAARGVCTLEDLAEQGVDDLTDIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
G +Q +I+ AR + W +
Sbjct: 472 -------GLNNEQAGELIMAAR-NICWFGDSE 495
>gi|323979112|gb|EGB74190.1| transcription termination protein NusA [Escherichia coli TW10509]
Length = 495
Score = 487 bits (1255), Expect = e-135, Method: Composition-based stats.
Identities = 206/511 (40%), Positives = 317/511 (62%), Gaps = 19/511 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLVVDEVTQPTKEITLEAARFEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F++ GEII+G VK+V N+ +DLGN+ + VI R++ + REN RPGDRV+
Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F +
Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I
Sbjct: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQPQ 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + + +++L ++ GID + L G+ T+EDLA +DDL
Sbjct: 422 EESLGDNKPADDLLNLEGIDRDLAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ ++I+ AR + W E
Sbjct: 472 -------GLTDEKAGALIMAAR-NICWFGDE 494
>gi|220934178|ref|YP_002513077.1| NusA antitermination factor [Thioalkalivibrio sp. HL-EbGR7]
gi|219995488|gb|ACL72090.1| NusA antitermination factor [Thioalkalivibrio sp. HL-EbGR7]
Length = 501
Score = 487 bits (1255), Expect = e-135, Method: Composition-based stats.
Identities = 215/515 (41%), Positives = 322/515 (62%), Gaps = 25/515 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + DAV+ EK ++++V+ + ++ A R +G D+RV I+ ETGD FR
Sbjct: 2 NKEILMVVDAVSNEKGVEKEVIFEAIEAALGSATRKKHGGEIDVRVSIHRETGDYETFRR 61
Query: 66 LEVVEEV----ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
VV++ E+ Q L A P I +G + +P+ +DFGR+A Q+AKQVI+QK
Sbjct: 62 WLVVDDEDPEFESPERQKLLSYAHQTHPDIQVGEYIEEPMESVDFGRIAAQTAKQVIVQK 121
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180
VREAER + EF+ +VGE++ G VKR E V +DLG + + I R+E I RE +RP D
Sbjct: 122 VREAERAKVVEEFRHRVGELVMGVVKRTERSGVFLDLGGNAEAFIPREEMIPRETVRPND 181
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
R++ Y+ +VR E RGPQ+ +SRT P+F++++F +EVPE+ G++ + +RDPG RAK+A
Sbjct: 182 RLRGYLKEVRSEPRGPQLFVSRTAPEFLIEMFKLEVPEVGQGLIDIMGAARDPGLRAKIA 241
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S+DS +DPVGACVGMRGSRVQ+V EL E++DI++W + A FVINA+ PA V +V
Sbjct: 242 VRSNDSRLDPVGACVGMRGSRVQSVSNELAGERVDIILWDDNPAQFVINAMSPAEVLSIV 301
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DED +++ V +E+LS AIGR GQN+RLASQLTGW ++++ E + + + + E +
Sbjct: 302 MDEDRHSMDIAVAEEKLSQAIGRGGQNIRLASQLTGWELNVMNEAQAAEKSEAEAAELQR 361
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
FM+ ++VDE +A +LV EGF+ +EE+A V SEI IE FDEE E++ RAR+ L
Sbjct: 362 MFMENLDVDEEVAAILVQEGFSSIEEVAYVPTSEIMQIEEFDEEIVEELRARARDALLTK 421
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
I +++ +E+L ++ G+D + L GI TMEDLA +VDDL+ S
Sbjct: 422 AIATEEQ-GGGEPAEDLLNMEGMDRDLAFKLAAKGICTMEDLAEQAVDDLVEIS------ 474
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ +I+ AR W ++
Sbjct: 475 -----------GLDAEKAGELIMTARAP--WFAED 496
>gi|152972093|ref|YP_001337239.1| transcription elongation factor NusA [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|238896676|ref|YP_002921421.1| transcription elongation factor NusA [Klebsiella pneumoniae
NTUH-K2044]
gi|262042727|ref|ZP_06015881.1| N utilization substance A [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|329997774|ref|ZP_08302913.1| transcription termination factor NusA [Klebsiella sp. MS 92-3]
gi|150956942|gb|ABR78972.1| transcription elongation factor NusA [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|238549003|dbj|BAH65354.1| transcription elongation factor [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|259039952|gb|EEW41069.1| N utilization substance A [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|328538908|gb|EGF64969.1| transcription termination factor NusA [Klebsiella sp. MS 92-3]
Length = 495
Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats.
Identities = 205/511 (40%), Positives = 317/511 (62%), Gaps = 19/511 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLVVEEVTQPTREITLEAARFEDESMNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F++ GEII+G VK+V N+ +DLGN+ + VI R++ + REN RPGDR++
Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNITLDLGNNAEAVILREDMLPRENFRPGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVLEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F +
Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L + +
Sbjct: 362 YLDIDEDFATVLVEEGFSSLEELAYVPMKELLEIDGLDEATVEALRERAKNALTTLALAQ 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + + +++L ++ G+D + L G+ T+EDLA VDDL
Sbjct: 422 EESLGDNKPADDLLNLEGLDRALAFKLAARGVCTLEDLAEQGVDDLADIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ +I+ AR + W E
Sbjct: 472 -------GMTDEKAGELIMAAR-NICWFGDE 494
>gi|71083093|ref|YP_265812.1| transcription termination factor [Candidatus Pelagibacter ubique
HTCC1062]
gi|71062206|gb|AAZ21209.1| transcription termination factor [Candidatus Pelagibacter ubique
HTCC1062]
Length = 517
Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats.
Identities = 242/506 (47%), Positives = 350/506 (69%), Gaps = 3/506 (0%)
Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
+++LELL+IA+AVA EKSID+++++ M I KAA+S +G ++I+V I+ E+GDI +F
Sbjct: 6 SDKLELLRIAEAVALEKSIDKELIIDSMETGIAKAAKSKFGQDNEIKVLIDRESGDIGIF 65
Query: 64 RLLEVVEEVENYTCQISLKVA---RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
R L VVE+ EN +I+L+ A + + IG + PLP DFGR+A Q+AKQVI
Sbjct: 66 RKLIVVEKPENTNTEINLQDAIILNEANKDKKIGDEILQPLPSFDFGRIAAQTAKQVISF 125
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
VREAER+RQY +F DK I+SG VKR+E+GNVIVDLG ++ +I+++E I REN++ GD
Sbjct: 126 NVREAERERQYNDFIDKKDSILSGIVKRLEFGNVIVDLGRTEAIIQKNEMIPRENIKAGD 185
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
RVK+Y YDV+RE RG Q+ LSR HP+FM KLF EVPEIY+G++++K+ +RDPGSRAK+
Sbjct: 186 RVKAYCYDVKREARGQQIFLSRAHPKFMEKLFVQEVPEIYDGLIEIKSSARDPGSRAKIC 245
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V + D+S+DPVGACVGMRGSRVQAVV EL+ EKIDIV WS D A V NAL PA V +V
Sbjct: 246 VKAVDTSLDPVGACVGMRGSRVQAVVNELQGEKIDIVNWSEDPAIVVSNALSPAEVQRVN 305
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+D +++VI+ +E LS AIGRRGQNVRLA++L + I+I+T+ EDS RQ +F E+T+
Sbjct: 306 VDSVAKKLDVILTEENLSKAIGRRGQNVRLATKLLNYEINIMTDAEDSERRQSEFKEKTE 365
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
F++ + +DE + LLVAEGF+ + ++ + IEG +E+TA + RA+E+ +
Sbjct: 366 NFVKNLELDETLGQLLVAEGFSSISDIKDSSPENLMKIEGIEEDTAKALIERAKEFYQKD 425
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ ++I++LG+ ++L + G+ + V LGE I +ED A + D+L G + G
Sbjct: 426 QEDITQRIKDLGLQDDLINHKGLTPGMLVTLGEQKILKLEDFADLASDELTGGYDVVKGE 485
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHAR 506
K G+L K + + +I+ AR
Sbjct: 486 RIKIQGYLEDFALSKTEADELIMSAR 511
>gi|194438826|ref|ZP_03070912.1| transcription termination/antitermination factor NusA [Escherichia
coli 101-1]
gi|194422298|gb|EDX38299.1| transcription termination/antitermination factor NusA [Escherichia
coli 101-1]
Length = 495
Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats.
Identities = 204/511 (39%), Positives = 316/511 (61%), Gaps = 19/511 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F++ GEII+G VK+V N+ +DLGN+ + VI R++ + REN RPGDRV+
Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQ V TEL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQTVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F +
Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I
Sbjct: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQ 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + + +++L ++ G+D + L G+ T+EDLA +DDL
Sbjct: 422 EESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ ++I+ AR + W E
Sbjct: 472 -------GLTDEKAGALIMAAR-NICWFGDE 494
>gi|206577127|ref|YP_002236420.1| transcription termination factor NusA [Klebsiella pneumoniae 342]
gi|288933403|ref|YP_003437462.1| NusA antitermination factor [Klebsiella variicola At-22]
gi|290511546|ref|ZP_06550915.1| N utilization substance protein A [Klebsiella sp. 1_1_55]
gi|206566185|gb|ACI07961.1| transcription termination factor NusA [Klebsiella pneumoniae 342]
gi|288888132|gb|ADC56450.1| NusA antitermination factor [Klebsiella variicola At-22]
gi|289776539|gb|EFD84538.1| N utilization substance protein A [Klebsiella sp. 1_1_55]
Length = 495
Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats.
Identities = 205/511 (40%), Positives = 317/511 (62%), Gaps = 19/511 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLVVEEVTQPTREITLEAARYEDESMNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F++ GEII+G VK+V N+ +DLGN+ + VI R++ + REN RPGDR++
Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNITLDLGNNAEAVILREDMLPRENFRPGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVLEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F +
Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L + +
Sbjct: 362 YLDIDEDFATVLVEEGFSSLEELAYVPMKELLEIDGLDEATVEALRERAKNALTTLALAQ 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + + +++L ++ G+D + L G+ T+EDLA VDDL
Sbjct: 422 EESLGDNKPADDLLNLEGLDRALAFKLAARGVCTLEDLAEQGVDDLADIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ +I+ AR + W E
Sbjct: 472 -------GMTDEKAGELIMAAR-NICWFGDE 494
>gi|168754150|ref|ZP_02779157.1| transcription termination/antitermination factor NusA [Escherichia
coli O157:H7 str. EC4401]
gi|168769587|ref|ZP_02794594.1| transcription termination/antitermination factor NusA [Escherichia
coli O157:H7 str. EC4486]
gi|168773164|ref|ZP_02798171.1| transcription termination/antitermination factor NusA [Escherichia
coli O157:H7 str. EC4196]
gi|168781312|ref|ZP_02806319.1| transcription termination/antitermination factor NusA [Escherichia
coli O157:H7 str. EC4076]
gi|195938389|ref|ZP_03083771.1| transcription elongation factor NusA [Escherichia coli O157:H7 str.
EC4024]
gi|208806905|ref|ZP_03249242.1| transcription termination/antitermination factor NusA [Escherichia
coli O157:H7 str. EC4206]
gi|208814506|ref|ZP_03255835.1| transcription termination/antitermination factor NusA [Escherichia
coli O157:H7 str. EC4045]
gi|208820220|ref|ZP_03260540.1| transcription termination/antitermination factor NusA [Escherichia
coli O157:H7 str. EC4042]
gi|209398727|ref|YP_002272640.1| transcription termination/antitermination factor NusA [Escherichia
coli O157:H7 str. EC4115]
gi|254795120|ref|YP_003079957.1| transcription elongation factor NusA [Escherichia coli O157:H7 str.
TW14359]
gi|187770909|gb|EDU34753.1| transcription termination/antitermination factor NusA [Escherichia
coli O157:H7 str. EC4196]
gi|189001070|gb|EDU70056.1| transcription termination/antitermination factor NusA [Escherichia
coli O157:H7 str. EC4076]
gi|189358578|gb|EDU76997.1| transcription termination/antitermination factor NusA [Escherichia
coli O157:H7 str. EC4401]
gi|189361406|gb|EDU79825.1| transcription termination/antitermination factor NusA [Escherichia
coli O157:H7 str. EC4486]
gi|208726706|gb|EDZ76307.1| transcription termination/antitermination factor NusA [Escherichia
coli O157:H7 str. EC4206]
gi|208735783|gb|EDZ84470.1| transcription termination/antitermination factor NusA [Escherichia
coli O157:H7 str. EC4045]
gi|208740343|gb|EDZ88025.1| transcription termination/antitermination factor NusA [Escherichia
coli O157:H7 str. EC4042]
gi|209160127|gb|ACI37560.1| transcription termination/antitermination factor NusA [Escherichia
coli O157:H7 str. EC4115]
gi|209758336|gb|ACI77480.1| transcription termination-antitermination factor NusA [Escherichia
coli]
gi|254594520|gb|ACT73881.1| transcription termination/antitermination L factor [Escherichia
coli O157:H7 str. TW14359]
Length = 495
Score = 487 bits (1253), Expect = e-135, Method: Composition-based stats.
Identities = 205/511 (40%), Positives = 317/511 (62%), Gaps = 19/511 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F++ GEII+G VK+V N+ +DLGN+ + VI R++ + REN RPGDRV+
Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F +
Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I
Sbjct: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQVQ 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + + +++L ++ G+D + L G+ T+EDLA +DDL
Sbjct: 422 EESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ ++I+ AR + W E
Sbjct: 472 -------GLTDEKAGALIMAAR-NICWFGDE 494
>gi|315288929|gb|EFU48327.1| transcription termination factor NusA [Escherichia coli MS 110-3]
Length = 495
Score = 487 bits (1253), Expect = e-135, Method: Composition-based stats.
Identities = 205/511 (40%), Positives = 317/511 (62%), Gaps = 19/511 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F++ GEII+G VK+V N+ +DLGN+ + VI R++ + REN RPGDRV+
Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNCDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F +
Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I
Sbjct: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQ 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + + +++L ++ G+D + L G+ T+EDLA +DDL
Sbjct: 422 EESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ ++I+ AR + W E
Sbjct: 472 -------GLTDEKAGALIMAAR-NICWFGDE 494
>gi|110807038|ref|YP_690558.1| transcription elongation factor NusA [Shigella flexneri 5 str.
8401]
gi|110616586|gb|ABF05253.1| transcription elongation factor NusA [Shigella flexneri 5 str.
8401]
Length = 495
Score = 487 bits (1253), Expect = e-135, Method: Composition-based stats.
Identities = 205/511 (40%), Positives = 317/511 (62%), Gaps = 19/511 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVIFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F++ GEII+G VK+V N+ +DLGN+ + VI R++ + REN RPGDRV+
Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F +
Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I
Sbjct: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQ 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + + +++L ++ G+D + L G+ T+EDLA +DDL
Sbjct: 422 EESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ ++I+ AR + W E
Sbjct: 472 -------GLTDEKAGALIMAAR-NICWFGDE 494
>gi|149185835|ref|ZP_01864150.1| transcription elongation factor NusA [Erythrobacter sp. SD-21]
gi|148830396|gb|EDL48832.1| transcription elongation factor NusA [Erythrobacter sp. SD-21]
Length = 554
Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats.
Identities = 284/538 (52%), Positives = 386/538 (71%), Gaps = 19/538 (3%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
+SAN+ ELL IA+AVA EK ID+ +V+ M ++IQK+AR+ YG +DIR +++P+TGD+
Sbjct: 5 ISANKAELLAIANAVASEKMIDKSIVIEAMEEAIQKSARNRYGAENDIRAKLDPQTGDLR 64
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L+R++EVVEEVE+Y Q+ LK A+ + IG + DPLPP+D GR+ QSAKQVI QK
Sbjct: 65 LWRVVEVVEEVEDYFKQVDLKAAQKLEADARIGDFIVDPLPPVDLGRIDAQSAKQVIFQK 124
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VR+AER+RQ+ EF+D+ GE+I+G +K VE+G+VIV+LG ++GVIRRD+ I RE R G+R
Sbjct: 125 VRDAERERQFNEFQDRAGEVITGVIKSVEFGHVIVNLGRAEGVIRRDQQIPREAARVGER 184
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++ I V R RGPQ+ LSR HP FM KLF EVPEIY+GI+++KA +RDPGSRAK+ V
Sbjct: 185 VRALITKVERNNRGPQIFLSRAHPDFMKKLFAQEVPEIYDGIIEIKAAARDPGSRAKIGV 244
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S DSSIDPVGACVGM+GSRVQAVV EL+ EKIDI+ WS D ATF++NAL+PA V++VVL
Sbjct: 245 ISHDSSIDPVGACVGMKGSRVQAVVQELQGEKIDIIPWSEDGATFIVNALQPATVSRVVL 304
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DE+ GRIEV+VP +QLSLAIGRRGQNVRLASQLTG IDI+TEEE S RQK+F ER++
Sbjct: 305 DEEDGRIEVVVPDDQLSLAIGRRGQNVRLASQLTGNQIDIMTEEEASEKRQKEFAERSKM 364
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F + ++VDE ++ LLVAEGFA++EE+A V++ E+ASIEGFDEE A E+Q RA+E L+ +
Sbjct: 365 FEEELDVDETLSQLLVAEGFAELEEVAYVELEELASIEGFDEELAEELQSRAQEALDRQE 424
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG--------- 472
++ +ELGV + L +P + + V LG+ G+KT++D+A + D+L+
Sbjct: 425 AAHREVRQELGVDDALAELPHMTEAMLVTLGKAGLKTLDDVADLATDELIAKKREAPRRR 484
Query: 473 --------WSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEV 522
++ + G L G ++Q +I+ AR W E E A
Sbjct: 485 NNNPDGPPMRRDRPMREQDKGGVLGEYGLTEEQGNEIIMAARAH--WFEDEDEAAPAA 540
>gi|260596201|ref|YP_003208772.1| transcription elongation factor NusA [Cronobacter turicensis z3032]
gi|260215378|emb|CBA27401.1| Transcription elongation protein nusA [Cronobacter turicensis
z3032]
Length = 495
Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats.
Identities = 202/511 (39%), Positives = 316/511 (61%), Gaps = 19/511 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKAVPREKIFEALESALATATKKKYEQEIDVRVSIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+VEEV T +I+L+ AR DPS+++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WVIVEEVTQPTREITLEAARYEDPSLNVGEYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184
ER +F++ GEII+G VK+V N+ +DLG N++ VI R++ + REN RPGDR++
Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRENITLDLGSNAEAVILREDMLPRENFRPGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y VR E RG Q+ ++R P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYAVRPEARGAQLFVTRAKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F +
Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A +LV EGF+ +EELA V + E+ ++G DE T ++ RA+ L + +
Sbjct: 362 YLDIDEEFATILVEEGFSTLEELAYVPMKELLEVDGLDEPTVEALRERAKNALTTLALAQ 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + + +++L ++ G+D + L G+ T++DLA VDDL
Sbjct: 422 EESLGDNKPADDLLNLEGMDRTLAYKLAARGVCTLDDLADQGVDDLADID---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ +I+ AR + W E
Sbjct: 472 -------GLTDEKAGELIMAAR-NIRWFSDE 494
>gi|110643410|ref|YP_671140.1| transcription elongation factor NusA [Escherichia coli 536]
gi|110345002|gb|ABG71239.1| N utilization substance protein A [Escherichia coli 536]
Length = 495
Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats.
Identities = 204/511 (39%), Positives = 316/511 (61%), Gaps = 19/511 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F++ GEII+G VK+V N+ +DLGN+ + VI R++ + REN RPGDRV+
Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYSVRPEARGVQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F +
Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I
Sbjct: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQ 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + + ++L ++ G+D + L G+ ++EDLA +DDL
Sbjct: 422 EESLGDNKPCDDLLNLEGVDRDLAFKLAARGVCSLEDLAEQGIDDLADIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ ++I+ AR + W E
Sbjct: 472 -------GLTDEKAGALIMAAR-NICWFGDE 494
>gi|294634514|ref|ZP_06713049.1| L factor [Edwardsiella tarda ATCC 23685]
gi|291092028|gb|EFE24589.1| L factor [Edwardsiella tarda ATCC 23685]
Length = 495
Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats.
Identities = 202/512 (39%), Positives = 315/512 (61%), Gaps = 19/512 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALETALATATKKKYEQEIDVRVAIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+VEEV T +I+L+ AR DP+ D+G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLIVEEVTQPTREITLEAARFEDPAFDLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER F++ GEI++G VK+V ++ +DLGN+ + VI R++ + REN RPGDR++
Sbjct: 122 ERAMVVDAFREHEGEIVTGVVKKVNRDSISLDLGNNAEAVIGREDMLPRENFRPGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++K +RDPGSRAK+AV ++
Sbjct: 182 VLYAVRPEARGAQLFVTRSRPEMLIELFRIEVPEIGEEVIEIKGAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V L+ AIGR GQNVRLASQL+GW ++++T E+ Q + + F +
Sbjct: 302 KHTMDIAVEASNLAQAIGRNGQNVRLASQLSGWELNVMTAEDLQAKHQAEAHAAIDTFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A LLV EGF+ +EELA V E+ +I+G DEE+ ++ RA+ L + +
Sbjct: 362 HLDIDEEFATLLVEEGFSTLEELAYVPERELLAIDGLDEESVEALRTRAKNALTTLALAQ 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + + +++L ++PG++ + L G+ T+EDLA VDDL
Sbjct: 422 EESLGDNKPADDLLNLPGMERSVAFKLAARGVCTLEDLAEQGVDDLTDIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
G D +I+ AR + W +
Sbjct: 472 -------GLNHDSAGELIMAAR-NICWFGDSE 495
>gi|89052531|ref|YP_507982.1| transcription elongation factor NusA [Jannaschia sp. CCS1]
gi|88862080|gb|ABD52957.1| NusA antitermination factor [Jannaschia sp. CCS1]
Length = 590
Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats.
Identities = 286/566 (50%), Positives = 382/566 (67%), Gaps = 53/566 (9%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
+ SAN+LELLQ A+AVA EK ID ++V+ M +S+ +AA+S YG+ DIRV I+ +TG
Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPNLVVEAMEESLARAAKSRYGSELDIRVSIDRKTGRA 62
Query: 61 SLFRLLEVVEE--VENYTCQISLKVA------------------RDRDPSID-------- 92
+ R+ V +E +EN ++ L A D +
Sbjct: 63 TFTRVRTVADEDTLENDKAEMLLADADATVAAERPNVVVFNAKSHVYDEEGEVVETRDVR 122
Query: 93 -------------------------IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
IG +++D +PP++ GR+A QSAKQVI+QKVREAER
Sbjct: 123 RFVMRKPTENDKLLTEGVDQSTGPVIGDMIADEVPPVEMGRIAAQSAKQVILQKVREAER 182
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
DRQ+ EFKD+VGEII+G VKR EYGNVIVD+G+ + +RR+E I RE R GDR++ YI
Sbjct: 183 DRQFAEFKDRVGEIINGVVKREEYGNVIVDVGSGEAQLRRNEKIGREAYRNGDRIRCYIK 242
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
DVRRE RG Q+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK+AV S D+
Sbjct: 243 DVRRENRGHQIFLSRTAPEFMRELFKMEVPEIYDGIIEIKAVARDPGSRAKIAVISYDNG 302
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
IDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D+ TF++NAL+PA V+KVVLDED G+
Sbjct: 303 IDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDAPTFLVNALQPAEVSKVVLDEDAGK 362
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
IEV+VP EQLSLAIGRRGQNVRLASQLT IDI+TEEE+S RQ +F ERT+ FM ++
Sbjct: 363 IEVVVPDEQLSLAIGRRGQNVRLASQLTNLDIDILTEEEESKRRQAEFEERTKLFMDTLD 422
Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427
+DE A LLV+EGF +EE+A V+ E+ I+G DE TA E+Q RAR+YLE + +K
Sbjct: 423 LDEFFAQLLVSEGFTALEEVAYVEADELLVIDGVDEGTAEELQARARDYLEAQNKLALEK 482
Query: 428 IRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGF 487
+E+GV E L + G+ ++ VALGE+G+KT+ED A C+ +L G +GG K DG
Sbjct: 483 AKEMGVEESLIAFEGLTPQMLVALGEDGVKTLEDFATCADWELAGGWTTEGGERIKDDGL 542
Query: 488 LSSLGTPKDQVESMIIHARYKMGWIE 513
L ++ ++M++ AR ++GW+
Sbjct: 543 LEPFEVSLEEAQNMVMTARLQLGWVT 568
>gi|82778483|ref|YP_404832.1| transcription elongation factor NusA [Shigella dysenteriae Sd197]
gi|309785496|ref|ZP_07680127.1| transcription elongation protein nusA [Shigella dysenteriae 1617]
gi|81242631|gb|ABB63341.1| transcription pausing [Shigella dysenteriae Sd197]
gi|308926616|gb|EFP72092.1| transcription elongation protein nusA [Shigella dysenteriae 1617]
Length = 495
Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats.
Identities = 206/511 (40%), Positives = 317/511 (62%), Gaps = 19/511 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F++ GEII+G VK+V N+ +DLGN+ + VI R++ + REN RPGDRV+
Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F +
Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I
Sbjct: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQ 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + + +++L ++ GID + L G+ T+EDLA +DDL
Sbjct: 422 EESLGDNKPADDLLNLEGIDRDLTFKLAARGVCTLEDLAEQGIDDLADIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ ++I+ AR + W E
Sbjct: 472 -------GLTDEKAGALIMAAR-NICWFGDE 494
>gi|283788203|ref|YP_003368068.1| transcription elongation protein [Citrobacter rodentium ICC168]
gi|282951657|emb|CBG91357.1| transcription elongation protein [Citrobacter rodentium ICC168]
Length = 495
Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats.
Identities = 204/511 (39%), Positives = 319/511 (62%), Gaps = 19/511 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+VEEV T +I+L+ AR D S+++GG V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLIVEEVTQPTKEITLEAARFEDESLNLGGYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F++ GEII+G VK+V N+ +DLGN+ + VI R++ + REN RPGDR++
Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y VR E RG Q+ ++R+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYAVRPEARGAQLFVTRSKPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F +
Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L + +
Sbjct: 362 YLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALTTLALAQ 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + + +++L ++ G++ ++ L G+ T+EDLA +DDL
Sbjct: 422 EESLGDNKPADDLLNLEGMNRELAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ +I+ AR + W E
Sbjct: 472 -------GLTDEKAGELIMAAR-NICWFGDE 494
>gi|262274884|ref|ZP_06052695.1| transcription termination protein NusA [Grimontia hollisae CIP
101886]
gi|262221447|gb|EEY72761.1| transcription termination protein NusA [Grimontia hollisae CIP
101886]
Length = 495
Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats.
Identities = 205/511 (40%), Positives = 315/511 (61%), Gaps = 19/511 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ +TG+ FR
Sbjct: 2 NKEILAVVEAVSNEKAVPRERIFEALETALATATKKKYDADIDVRVAIDRKTGEFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVEEV T +I+L+ A+ D ++++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLVVEEVTLPTREITLEAAQFDDETLELGSYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER + +F + GE+I+G VK+V VIVDLGN+ + I+RD+ + REN RPGDRV+
Sbjct: 122 ERAQVVEQFMENEGELITGVVKKVNRDVVIVDLGNNAEAAIQRDDQLPRENFRPGDRVRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y VR E RG Q+ ++R+ P+ +++LF +EVPEI +++V +RDPGSRAK+AV ++
Sbjct: 182 LLYAVRPEARGFQLFMTRSKPEMLIELFRIEVPEIGEEMIEVMGAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V + L+ AIGR GQNVRLASQLTGW ++++T ++ Q++ + + F +
Sbjct: 302 THTMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVQDLQKKHQEEAGQSIELFSK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A +LV EGF +EE+A V +E+ I G DE+T E++ RA+E L I +
Sbjct: 362 HLDIDEDFAAVLVEEGFTTLEEVAYVPAAELLEINGLDEDTVEELRSRAKEALTTIALAK 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + +E+L + G++ + L GI T+EDLA DDLL
Sbjct: 422 EEILEGAEPAEDLLGLEGLERDLAFRLAAKGICTLEDLADQGTDDLLDIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G + + +I+ AR + W E
Sbjct: 472 -------GMDEVKAGELIMAAR-NICWFSDE 494
>gi|295687485|ref|YP_003591178.1| transcription termination factor NusA [Caulobacter segnis ATCC
21756]
gi|295429388|gb|ADG08560.1| transcription termination factor NusA [Caulobacter segnis ATCC
21756]
Length = 560
Score = 486 bits (1250), Expect = e-135, Method: Composition-based stats.
Identities = 297/514 (57%), Positives = 392/514 (76%), Gaps = 3/514 (0%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
++ANRLELLQIADAVA EK I+++VV+ + D++QKAAR+ YG DIRV+I+P+TG+ +
Sbjct: 5 IAANRLELLQIADAVAREKGIEKEVVIEAIEDALQKAARARYGAEHDIRVKIDPKTGETT 64
Query: 62 LFRLLEVVEEVENYTCQI---SLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
R++EVV + +I L +A+ +IG V + LPP + GRV Q A+QV+
Sbjct: 65 QKRVIEVVSDDAELEGEIGKMPLSIAKRAWRDAEIGKVYEEALPPFEIGRVQTQMARQVV 124
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178
+ KVREAER+RQY E+KD+VGEI++G+VKRVEYGNVIVDLG +G++RRD++I REN
Sbjct: 125 MHKVREAERERQYDEYKDRVGEIVNGSVKRVEYGNVIVDLGRGEGIMRRDQSIPRENFNV 184
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
GDR+++YIYDVRRE +GPQ++LSR H FM KLF EVPE+Y+G+++++AV+RDPGSRAK
Sbjct: 185 GDRIRAYIYDVRRETKGPQIMLSRAHGGFMAKLFAQEVPEVYDGVIEIRAVARDPGSRAK 244
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATF++NAL PA V+K
Sbjct: 245 MAVISNDSSIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWSEDEATFIVNALAPAEVSK 304
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VV+DE+ R+EV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE ++S RQ++F ER
Sbjct: 305 VVMDEEDERVEVVVPDEQLSLAIGRRGQNVRLASQLTGWQIDIMTESQESERRQREFTER 364
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
T F +A++VDE+IA LLV EGFA VE++A V+ EIA+IEGFDEETA E+Q RARE+LE
Sbjct: 365 TALFQEALDVDEVIAQLLVTEGFAAVEDVAYVEPHEIAAIEGFDEETAEELQARAREFLE 424
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
L K + LGV +E+ +I G+ + VALGE +KT+EDLAG DD+ GW E+K
Sbjct: 425 KEAAELDAKRKALGVEDEVLAIEGVTLAMAVALGEGDVKTVEDLAGLVPDDMRGWFESKN 484
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512
G + G L + + E++I+ AR MGW+
Sbjct: 485 GERVREPGILETFNLSPEDAEALIMRARVAMGWV 518
>gi|82545591|ref|YP_409538.1| transcription elongation factor NusA [Shigella boydii Sb227]
gi|187731710|ref|YP_001881914.1| transcription elongation factor NusA [Shigella boydii CDC 3083-94]
gi|81247002|gb|ABB67710.1| NusA [Shigella boydii Sb227]
gi|187428702|gb|ACD07976.1| transcription termination/antitermination factor NusA [Shigella
boydii CDC 3083-94]
gi|320175533|gb|EFW50629.1| Transcription termination protein NusA [Shigella dysenteriae CDC
74-1112]
gi|320186658|gb|EFW61382.1| Transcription termination protein NusA [Shigella flexneri CDC
796-83]
gi|332090718|gb|EGI95812.1| transcription elongation protein nusA [Shigella boydii 3594-74]
Length = 495
Score = 486 bits (1250), Expect = e-135, Method: Composition-based stats.
Identities = 205/511 (40%), Positives = 317/511 (62%), Gaps = 19/511 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F++ GEII+G VK+V N+ ++LGN+ + VI R++ + REN RPGDRV+
Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLELGNNAEAVILREDMLPRENFRPGDRVRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F +
Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I
Sbjct: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQ 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + + +++L ++ GID + L G+ T+EDLA +DDL
Sbjct: 422 EESLGDNKPADDLLNLEGIDRDLAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ ++I+ AR + W E
Sbjct: 472 -------GVTDEKAGALIMAAR-NICWFGDE 494
>gi|157148740|ref|YP_001456059.1| transcription elongation factor NusA [Citrobacter koseri ATCC
BAA-895]
gi|157085945|gb|ABV15623.1| hypothetical protein CKO_04570 [Citrobacter koseri ATCC BAA-895]
Length = 495
Score = 486 bits (1250), Expect = e-135, Method: Composition-based stats.
Identities = 202/511 (39%), Positives = 316/511 (61%), Gaps = 19/511 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLIVEEVTLPTKEITLEAARFEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184
ER +F++ GEII+G VK+V N+ +DLG N++ VI R++ + REN RPGDR++
Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGSNAEAVILREDMLPRENFRPGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + F +
Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLAAQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A +LV EGFA +EELA V + E+ I+G DE T ++ RA+ L + +
Sbjct: 362 YLDIDEEFATVLVEEGFATLEELAYVPMKELLEIDGLDEPTVEALRERAKNALTTLALAQ 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + + S++L ++ G+ + L G+ T+EDLA +DDL
Sbjct: 422 EESLGDNKPSDDLLNLEGLGRDLAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ +I+ AR + W E
Sbjct: 472 -------GLTDEKAGELIMAAR-NICWFGDE 494
>gi|295097658|emb|CBK86748.1| transcription termination factor NusA/transcription termination
factor NusA, C-terminal duplication [Enterobacter
cloacae subsp. cloacae NCTC 9394]
Length = 500
Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats.
Identities = 206/516 (39%), Positives = 318/516 (61%), Gaps = 24/516 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EKS+ R+ + + ++ A + Y D+RVEI+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WVIVEEVTQPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPG 179
ER +F+D+ GEII+G VK+V N+ +++ GN++ VI R++ + REN RPG
Sbjct: 122 ERALVVDQFRDQEGEIITGVVKKVNRDNISLEIKSEGLPGNAEAVILREDMLPRENFRPG 181
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
DR++ +Y VR E RG Q+ ++R+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+
Sbjct: 182 DRIRGVLYAVRPEARGAQLFVTRSKPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAKI 241
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +
Sbjct: 242 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 301
Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + +
Sbjct: 302 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAI 361
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L
Sbjct: 362 DTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALTT 421
Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479
+ + ++ + + +++L ++ G+D I L G+ T+EDLA VDDL
Sbjct: 422 LALAQEESLGDKKPADDLLNLEGLDRAIAFKLAARGVCTLEDLAEQGVDDLADIE----- 476
Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ +I+ AR + W E
Sbjct: 477 ------------GLTDEKAGELIMAAR-NICWFGDE 499
>gi|315294914|gb|EFU54253.1| transcription termination factor NusA [Escherichia coli MS 153-1]
Length = 495
Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats.
Identities = 204/511 (39%), Positives = 316/511 (61%), Gaps = 19/511 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F++ GEII+G VK+V N+ +DLGN+ + VI R++ + REN RPGDRV+
Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D ID VGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDLVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F +
Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I
Sbjct: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQ 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + + +++L ++ G+D + L G+ T+EDLA +DDL
Sbjct: 422 EESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ ++I+ AR + W E
Sbjct: 472 -------GLTDEKAGALIMAAR-NICWFGDE 494
>gi|237730089|ref|ZP_04560570.1| transcription elongation factor NusA [Citrobacter sp. 30_2]
gi|226908695|gb|EEH94613.1| transcription elongation factor NusA [Citrobacter sp. 30_2]
Length = 495
Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats.
Identities = 203/511 (39%), Positives = 319/511 (62%), Gaps = 19/511 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WVIVEEVTQPTKEITLEAARFEDESLNVGEYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184
ER +F++ GEI++G VK+V N+ +DLG N++ VI R++ + REN RPGDR++
Sbjct: 122 ERAMVVDQFREHEGEIVTGVVKKVNRDNISLDLGSNAEAVILREDMLPRENFRPGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F +
Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A +LV EGFA +EELA V + E+ I+G DE+T ++ RA+ L + +
Sbjct: 362 YLDIDEDFATVLVEEGFATLEELAYVPMKELLEIDGLDEQTVEALRERAKNALTTLALAQ 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + + +++L ++ G+D ++ L G+ T+EDLA +DDL
Sbjct: 422 EESLGDNKPADDLLNLEGLDREMAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ +I+ AR + W E
Sbjct: 472 -------GLTDEKAGELIMAAR-NICWFGDE 494
>gi|85373514|ref|YP_457576.1| transcription elongation factor NusA [Erythrobacter litoralis
HTCC2594]
gi|84786597|gb|ABC62779.1| N-utilization substance protein A [Erythrobacter litoralis
HTCC2594]
Length = 557
Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats.
Identities = 286/531 (53%), Positives = 386/531 (72%), Gaps = 18/531 (3%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
+SAN+ ELL IA+AVA EK ID+ +V+ M ++IQK+AR+ YG +DIR +++P+TGD+
Sbjct: 5 ISANKAELLAIANAVASEKMIDKAIVIEAMEEAIQKSARNRYGAENDIRAKLDPQTGDLR 64
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L+R++EVVEEVE+Y Q+ LK A+ + IG + DPLPP+D GR+ QSAKQVI QK
Sbjct: 65 LWRVVEVVEEVEDYFKQVDLKSAQKLEEGAAIGDFIVDPLPPVDLGRIDAQSAKQVIFQK 124
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VR+AER+RQ+ EFKD+ GE+I+G +K VE+G+VIV+LG ++GVIRRD+ I RE R G+R
Sbjct: 125 VRDAERERQFEEFKDRAGEVITGVIKSVEFGHVIVNLGRAEGVIRRDQQIPREAARVGER 184
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++ I V R RGPQ+ LSR HP FM KLF EVPEIY+GI+++KA +RDPGSRAK+ V
Sbjct: 185 VRAIITKVERNNRGPQIFLSRAHPDFMRKLFAQEVPEIYDGIIEIKAAARDPGSRAKIGV 244
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S DSSIDPVGACVGM+GSRVQAVV EL+ EKIDI+ WS D ATF++NAL+PA V++VVL
Sbjct: 245 ISHDSSIDPVGACVGMKGSRVQAVVQELQGEKIDIIPWSEDQATFIVNALQPATVSRVVL 304
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP +QLSLAIGRRGQNVRLASQLTG IDI+TEEE S + K+F ER++
Sbjct: 305 DEDESRIEVVVPDDQLSLAIGRRGQNVRLASQLTGNQIDIMTEEEASEKQSKEFAERSKM 364
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F + ++VDE ++ LLVAEGFA++EE+A V + E+A+IEGFDEE A E+Q RA+E LE
Sbjct: 365 FEEELDVDETLSQLLVAEGFAELEEVAYVAMEELAAIEGFDEELAEELQSRAQEALERQA 424
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG--------- 472
+K+ RELGV ++L +P + ++ V LG++GIKT++DLA + D+L+
Sbjct: 425 EAYRKERRELGVEDDLAELPHLSEQMLVTLGKSGIKTLDDLADLATDELIQKKREAPRRR 484
Query: 473 -------WSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
++ + G L G ++Q +I+ AR W E E+
Sbjct: 485 NTAEGPRMRSDRPQREQDKGGVLGEYGLTEEQGNEIIMAARAH--WFEDEE 533
>gi|296104883|ref|YP_003615029.1| transcription elongation factor NusA [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295059342|gb|ADF64080.1| transcription elongation factor NusA [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 500
Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats.
Identities = 206/516 (39%), Positives = 318/516 (61%), Gaps = 24/516 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EKS+ R+ + + ++ A + Y D+RVEI+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WVIVEEVTQPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPG 179
ER +F+D+ GEII+G VK+V N+ +++ GN++ VI R++ + REN RPG
Sbjct: 122 ERALVVDQFRDQEGEIITGVVKKVNRDNISLEIKSEGMPGNAEAVILREDMLPRENFRPG 181
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
DR++ +Y VR E RG Q+ ++R+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+
Sbjct: 182 DRIRGVLYAVRPEARGAQLFVTRSKPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAKI 241
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +
Sbjct: 242 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 301
Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + +
Sbjct: 302 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAI 361
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L
Sbjct: 362 DTFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALTT 421
Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479
+ + ++ + + +++L ++ G+D I L G+ T+EDLA VDDL
Sbjct: 422 LALAQEESLGDKKPADDLLNLEGLDRAIAFKLAARGVCTLEDLAEQGVDDLADIE----- 476
Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ +I+ AR + W E
Sbjct: 477 ------------GLTDEKAGELIMAAR-NICWFGDE 499
>gi|271499173|ref|YP_003332198.1| transcription termination factor NusA [Dickeya dadantii Ech586]
gi|270342728|gb|ACZ75493.1| transcription termination factor NusA [Dickeya dadantii Ech586]
Length = 496
Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats.
Identities = 207/508 (40%), Positives = 316/508 (62%), Gaps = 19/508 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ +TGD FR
Sbjct: 2 NKEILAVVEAVSNEKAVPREKIFEALETALATATKKKYEQEIDVRVCIDRKTGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV EV T +I+L+ A+ +PSID+GG + D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLVVNEVTQPTREITLEAAQFEEPSIDLGGYIEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184
ER +F+++ GEI++G VK+V N+ +DLG N++ VI R++ + REN RPGDR++
Sbjct: 122 ERAMVVDQFREQEGEIVTGVVKKVNRDNITLDLGSNAEAVIGREDMLPRENFRPGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y VR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYAVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V L+ AIGR GQNVRLASQL+GW ++++T E+ Q + + F +
Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTIEDLQAKHQAEAHAAIDIFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A LV EGF+ +EELA V I E+ I+G DEET ++ RA+ L + +
Sbjct: 362 HLDIDEEFATALVEEGFSSLEELAYVPIHELQEIDGLDEETIEALRERAKAALTTLALAN 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ +E+L ++ G+ ++ L G+ T+EDLA VDDL
Sbjct: 422 EENRGNGQPAEDLLNLSGLSRELAFKLAARGVCTLEDLAEQGVDDLADIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512
G ++Q +I+ AR + W
Sbjct: 472 -------GLNEEQAGELIMAAR-NICWF 491
>gi|251791036|ref|YP_003005757.1| transcription elongation factor NusA [Dickeya zeae Ech1591]
gi|247539657|gb|ACT08278.1| NusA antitermination factor [Dickeya zeae Ech1591]
Length = 496
Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats.
Identities = 207/508 (40%), Positives = 318/508 (62%), Gaps = 19/508 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ +TGD FR
Sbjct: 2 NKEILAVVEAVSNEKAVPREKIFEALETALATATKKKYEQEIDVRVCIDRKTGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+VV EV T +I+L+ A+ +PSID+GG + D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WQVVNEVTQPTREITLEAAQFEEPSIDLGGYIEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184
ER +F+++ GEI++G VK+V N+ +DLG N++ VI R++ + REN RPGDR++
Sbjct: 122 ERAMVVDQFREQEGEIVTGVVKKVNRDNITLDLGSNAEAVIGREDMLPRENFRPGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y VR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYAVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V L+ AIGR GQNVRLASQL+GW ++++T E+ Q + + F +
Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTIEDLQAKHQAEAHAAIDIFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A LV EGF+ +EELA V I+E+ I+G DEET ++ RA+ L + +
Sbjct: 362 HLDIDEEFATALVEEGFSSLEELAYVPINELQEIDGLDEETIEALRERAKAALTTLALAN 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ +E+L ++ G+ ++ L G+ T+EDLA VDDL
Sbjct: 422 EENRGNGQPAEDLLNLSGLSRELAFKLAARGVCTLEDLAEQGVDDLADIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512
G ++Q +I+ AR + W
Sbjct: 472 -------GLDEEQAGELIMAAR-NICWF 491
>gi|162147158|ref|YP_001601619.1| transcription elongation factor NusA [Gluconacetobacter
diazotrophicus PAl 5]
gi|209544214|ref|YP_002276443.1| transcription elongation factor NusA [Gluconacetobacter
diazotrophicus PAl 5]
gi|161785735|emb|CAP55306.1| Transcription elongation protein nusA [Gluconacetobacter
diazotrophicus PAl 5]
gi|209531891|gb|ACI51828.1| NusA antitermination factor [Gluconacetobacter diazotrophicus PAl
5]
Length = 523
Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats.
Identities = 286/511 (55%), Positives = 371/511 (72%), Gaps = 16/511 (3%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
S +R ELL +ADAVA EK+IDR+ VL M +IQKA R+ YG DIR I+ +TGD+
Sbjct: 3 TSVSRPELLLVADAVAREKAIDREEVLEAMEQAIQKAGRAKYGHEKDIRATIDRKTGDVR 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L R E VEEVEN QI L +AR P I +G + DPLPP+DFGR+A Q+AKQVI+Q+
Sbjct: 63 LSRWTEAVEEVENEETQIPLHIARKFKPEIQLGEHLVDPLPPIDFGRIAAQTAKQVIVQR 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VRE ER RQY EFKD+VGEI++GTVKR EYGN++V++G+S+ ++RRDE I RE+ R DR
Sbjct: 123 VREYERKRQYDEFKDRVGEIVNGTVKRTEYGNLMVEIGSSEALLRRDELIPRESFRNSDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++YIYDVR E RGPQ+ LSRTHP F+ KLF EVPEIY+GI+++KAV+RDPGSRAK+AV
Sbjct: 183 VRAYIYDVRDEPRGPQIFLSRTHPAFLAKLFAQEVPEIYDGIIEIKAVARDPGSRAKMAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSP +ATFV+NAL PA VTKVV+
Sbjct: 243 ISRDASIDPVGACVGMRGSRVQAVVQELQGEKIDIIPWSPQAATFVVNALAPAEVTKVVM 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DE+ GR+EV+VP EQLSLAIGRRGQNVRLASQLT W IDI+TE E+S RQ++F R+
Sbjct: 303 DEEAGRVEVVVPDEQLSLAIGRRGQNVRLASQLTRWDIDILTEAEESERRQEEFRRRSGL 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F++A++VD++IA LLV EGF +EELA E+A IEGFDE+ A E+ RA +L +
Sbjct: 363 FVEALDVDDVIAGLLVTEGFHSIEELAYADPDELAEIEGFDEDVAGELVRRAEGFLARRE 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
L +K R LGVS+++ ++ +++ V LGE G+K+++DLA + D+L+
Sbjct: 423 DELDEKRRGLGVSDDVAALGVFSNQMLVTLGEKGVKSLDDLADLAGDELVEI-------- 474
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512
L ++ +I+ AR W
Sbjct: 475 ------LGGEVIDEEAANEIIMAARAH--WF 497
>gi|261342615|ref|ZP_05970473.1| L factor [Enterobacter cancerogenus ATCC 35316]
gi|288315263|gb|EFC54201.1| L factor [Enterobacter cancerogenus ATCC 35316]
Length = 500
Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats.
Identities = 206/516 (39%), Positives = 318/516 (61%), Gaps = 24/516 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EKS+ R+ + + ++ A + Y D+RVEI+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WVIVEEVTQPTKEITLEAARYEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPG 179
ER +F+D+ GEII+G VK+V N+ +++ GN++ VI R++ + REN RPG
Sbjct: 122 ERALVVDQFRDQEGEIITGVVKKVNRDNISLEIKSEGMPGNAEAVILREDMLPRENFRPG 181
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
DR++ +Y VR E RG Q+ ++R+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+
Sbjct: 182 DRIRGVLYAVRPEARGAQLFVTRSKPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAKI 241
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +
Sbjct: 242 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 301
Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + +
Sbjct: 302 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAI 361
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L
Sbjct: 362 DTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIDGLDEATVEALRERAKNALTT 421
Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479
+ + ++ + + +++L ++ G+D I L G+ T+EDLA VDDL
Sbjct: 422 LALAQEESLGDNKPADDLLNLEGLDRAIAFKLAARGVCTLEDLAEQGVDDLADIE----- 476
Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ +I+ AR + W E
Sbjct: 477 ------------GLTDEKAGELIMAAR-NICWFGDE 499
>gi|85058354|ref|YP_454056.1| transcription elongation factor NusA [Sodalis glossinidius str.
'morsitans']
gi|84778874|dbj|BAE73651.1| transcription pausing L factor [Sodalis glossinidius str.
'morsitans']
Length = 495
Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats.
Identities = 203/510 (39%), Positives = 312/510 (61%), Gaps = 19/510 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y ++RV I+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKAVPREKIFEALETALATATKKKYEQEIEVRVSIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+V+EV T +I+L A+ DP+ IGG + D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLIVDEVTQPTREITLDAAQFDDPTAQIGGYIEDEIESVVFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184
ER +F+ GEI++G VK+V ++ +DLG N++ VI R++ + REN RPGDR++
Sbjct: 122 ERAMVVDQFRSHEGEIVTGVVKKVNRDSISLDLGSNAEAVIGREDMLPRENFRPGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y VR E RG Q+ +SR+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYSVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V L+ AIGR GQNVRLASQL+GW ++++T E+ Q + + F +
Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVEDLQAKHQAEAHAAIDIFTR 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A +LV EGF+ +EELA V I+E+ IEG DEET ++ RA+ L + +
Sbjct: 362 NLDIDEEFATVLVEEGFSSLEELAYVPINELLEIEGLDEETVEALRERAKNALTTLALAQ 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ +E+L +P ++ + L G+ T+EDLA VDDL
Sbjct: 422 EENRGAGVPAEDLLGLPELERDMAFKLAARGVCTLEDLAEQGVDDLTDIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
G ++ +I+ AR + W
Sbjct: 472 -------GLSSEKAGELIMAAR-NICWFGD 493
>gi|242240750|ref|YP_002988931.1| transcription elongation factor NusA [Dickeya dadantii Ech703]
gi|242132807|gb|ACS87109.1| NusA antitermination factor [Dickeya dadantii Ech703]
Length = 496
Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats.
Identities = 204/513 (39%), Positives = 316/513 (61%), Gaps = 19/513 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ +TGD FR
Sbjct: 2 NKEILAVVEAVSNEKAVPREKIFEALETALATATKKKYEQDIDVRVCIDRKTGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV EV T +I+L+ A+ +P +D+GG + D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLVVNEVTQPTREITLEAAQFEEPEVDLGGYIEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184
ER +F+++ GEI++G VK+V N+ +DLG N++ VI R++ + REN RPGDR++
Sbjct: 122 ERAMVVDQFREQEGEIVTGVVKKVNRDNITLDLGSNAEAVIGREDMLPRENFRPGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y VR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYAVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V L+ AIGR GQNVRLASQL+GW ++++T E+ Q + + F +
Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTIEDLQAKHQAEAHAAIDVFTR 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A LV EGF+ +EELA V I+E+ I+G DEET ++ RA+ L + +
Sbjct: 362 YLDIDEEFATALVEEGFSSLEELAYVPITELQEIDGLDEETIEALRERAKAALTTLALAR 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ +E+L ++ G+ ++ L G+ T+EDLA VDDL
Sbjct: 422 EENRGAGQPAEDLLNLAGLPREMAFTLAARGVCTLEDLAEQGVDDLTDID---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517
G +++ +I+ AR + W
Sbjct: 472 -------GLNEERAGELIMAAR-NICWFGDSNE 496
>gi|307129384|ref|YP_003881400.1| transcription termination/antitermination L factor [Dickeya
dadantii 3937]
gi|306526913|gb|ADM96843.1| transcription termination/antitermination L factor [Dickeya
dadantii 3937]
Length = 496
Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats.
Identities = 207/508 (40%), Positives = 316/508 (62%), Gaps = 19/508 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ +TGD FR
Sbjct: 2 NKEILAVVEAVSNEKAVPREKIFEALETALATATKKKYEQEIDVRVCIDRKTGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+VV EV T +I+L+ A+ +PSID+GG + D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WQVVNEVTQPTREITLEAAQFEEPSIDLGGYIEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184
ER +F+++ GEI++G VK+V N+ +DLG N++ VI R++ + REN RPGDR++
Sbjct: 122 ERAMVVDQFREQEGEIVTGVVKKVNRDNISLDLGSNAEAVIGREDMLPRENFRPGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y VR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYAVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V L+ AIGR GQNVRLASQL+GW ++++T E+ Q + + F +
Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTIEDLQAKHQAEAHAAIDIFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A LV EGF+ +EELA V I E+ I+G DEET ++ RA+ L + +
Sbjct: 362 HLDIDEEFATALVEEGFSSLEELAYVPIHELQEIDGLDEETIEALRERAKAALTTLALAN 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ +E+L ++ G+ ++ L G+ T+EDLA VDDL
Sbjct: 422 EENRGNGQPAEDLLNLSGLSRELAFKLAARGVCTLEDLAEQGVDDLADIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512
G + Q +I+ AR + W
Sbjct: 472 -------GLDEAQAGELIMAAR-NICWF 491
>gi|291616009|ref|YP_003518751.1| NusA [Pantoea ananatis LMG 20103]
gi|291151039|gb|ADD75623.1| NusA [Pantoea ananatis LMG 20103]
Length = 500
Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats.
Identities = 204/514 (39%), Positives = 320/514 (62%), Gaps = 19/514 (3%)
Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62
+ E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ ++GD
Sbjct: 4 TRMNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVSIDRKSGDFDT 63
Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
FR E+VE+V T +I+L AR D S+++G V D + + F R+ Q+AKQVI+QKV
Sbjct: 64 FRRWEIVEQVTQPTREITLDAARYEDESLNLGEYVEDQIESVTFDRITTQTAKQVIVQKV 123
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
REAER +F+++ GEII+G VK+V N+ +DLGN+ + VI R++ + REN RPGDR
Sbjct: 124 REAERAMVVDQFREQEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDR 183
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV
Sbjct: 184 IRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVLEIKAAARDPGSRAKIAV 243
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
++D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+
Sbjct: 244 KTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVV 303
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + +
Sbjct: 304 DEDNHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDM 363
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F + +++DE A +LV EGF+ +EE+A V I+E+ I+G DEET ++ RA+ L +
Sbjct: 364 FTKHLDIDEEFATILVEEGFSTLEEMAYVPINELLEIDGLDEETIEALRERAKNALTTLA 423
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ ++ + +E+L ++ G+D + L G+ T+EDLA VDDL
Sbjct: 424 LAKEESLGNQEPAEDLLNLEGLDRALAFRLASKGVCTLEDLAEQGVDDLTDIE------- 476
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G +Q ++I+ AR + W +
Sbjct: 477 ----------GLTDEQAGALIMAAR-NICWFGDD 499
>gi|146313241|ref|YP_001178315.1| transcription elongation factor NusA [Enterobacter sp. 638]
gi|145320117|gb|ABP62264.1| NusA antitermination factor [Enterobacter sp. 638]
Length = 495
Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats.
Identities = 205/511 (40%), Positives = 314/511 (61%), Gaps = 19/511 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EKS+ R+ + + ++ A + Y D+RVEI+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+VEEV T +I+L+ AR D S ++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WVIVEEVTQPTKEITLEAARYEDESFNVGEYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184
ER +F+ GEII+G VK+V N+ +DLG N++ VI R++ + REN RPGDR++
Sbjct: 122 ERAMVVDQFRSHEGEIITGVVKKVNRDNIALDLGSNAEAVILREDMLPRENFRPGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y VR E RG Q+ ++R+ + +++LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYAVRPEARGAQLFVTRSKAEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV TEL E+IDI++W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIILWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F +
Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWDLNVMTVDDLQAKHQAEAHAAIATFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+ +DE A +LV EGF+ +EELA V I E+ I+G DE T ++ RA+ L + +
Sbjct: 362 YLEIDEDFATVLVEEGFSSLEELAYVPIKELLEIDGLDEATVEALRERAKNALTTLALAQ 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + + +++L ++ G+D I L +G+ T+EDLA VDDL
Sbjct: 422 EESLGDNKPADDLLNLEGLDRAIAFKLAAHGVCTLEDLAEQGVDDLADIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ +I+ AR + W E
Sbjct: 472 -------GLTDEKAGELIMAAR-NICWFGDE 494
>gi|85712989|ref|ZP_01044027.1| transcription elongation factor NusA [Idiomarina baltica OS145]
gi|85693158|gb|EAQ31118.1| transcription elongation factor NusA [Idiomarina baltica OS145]
Length = 497
Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats.
Identities = 206/512 (40%), Positives = 325/512 (63%), Gaps = 23/512 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L +A+AV+ EK++ R+ + + ++ A + Y D+R++I+ TG+ FR
Sbjct: 4 EILLVAEAVSNEKAVPREKIFEALESALAHATKKKYDGDIDVRIDIDRATGEFDTFRRWL 63
Query: 68 VVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
VVE+ +E+ +ISL A+ DPS+ +G V + + + F R+ Q+AKQVI+QKVR
Sbjct: 64 VVEDTDTGLEHPYREISLSAAQYEDPSLQLGDYVEEQIESIQFDRITTQTAKQVIVQKVR 123
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182
EAER + E++D+VGE+++GTVKR +VI+DLGN+ + +I R+E + RE++RPGDRV
Sbjct: 124 EAERAQVVDEYRDQVGELVTGTVKRANREHVILDLGNNAEAIIYREEMLPRESVRPGDRV 183
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
+ +YDVR E RG Q+ ++R+ P+F+++LF +EVPEI ++++K +RDPGSRAK+AV
Sbjct: 184 RGLLYDVRPEARGAQLFVTRSRPEFLMELFRIEVPEIGEEMIELKGAARDPGSRAKIAVK 243
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
S+D IDPVGACVGMRG+RVQAV EL E++DIV+W + A FVINA+ PA V +V+D
Sbjct: 244 SNDRRIDPVGACVGMRGARVQAVSGELGGERVDIVLWDDNPAQFVINAMAPAEVASIVVD 303
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
ED +++ V + L+ AIG+ GQNVRLASQL+GWT++++T ++ + + + N F
Sbjct: 304 EDAHTMDIAVAADNLAQAIGKSGQNVRLASQLSGWTLNVMTVDDFNEKNEAETNRLLNLF 363
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
+ ++++DE A +LV EGF+ +EE+A V ++E IEG DE+ E++GRAR YL +
Sbjct: 364 ITSLDIDEDFASVLVDEGFSSLEEVAYVPVAEFLEIEGMDEDIVEELRGRARAYLTTKAL 423
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482
++ + E L + G+D + L G+ ++E+LA +DDL G E
Sbjct: 424 ADEESLESAEPDESLLGLEGMDRHLAYVLASRGVTSLEELAEQGIDDLAGIEE------- 476
Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
+ Q +I+ AR + W +
Sbjct: 477 ----------LDEQQAGDLIMKAR-NICWFSE 497
>gi|296285012|ref|ZP_06863010.1| transcription elongation factor NusA [Citromicrobium bathyomarinum
JL354]
Length = 557
Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats.
Identities = 282/542 (52%), Positives = 381/542 (70%), Gaps = 20/542 (3%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
+SANR ELL IA++VA EK ID+ +V+ M ++IQK+AR+ YG +DIR +++P+TGD+
Sbjct: 5 ISANRAELLAIANSVASEKMIDKSIVIEAMEEAIQKSARNRYGAENDIRAKLDPQTGDLR 64
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L+R++EVVEEVE+Y Q+ LK A+ +G + DPLPP+D GR+ QSAKQVI QK
Sbjct: 65 LWRVVEVVEEVEDYFKQVDLKQAQKLQDGAAVGDFIVDPLPPVDLGRIDAQSAKQVIFQK 124
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VR+AER+RQY EFKD+ GEII+G +K VE+G+VIV+LG ++GVIRRD+ I RE R G+R
Sbjct: 125 VRDAERERQYDEFKDRAGEIITGVIKSVEFGHVIVNLGRAEGVIRRDQQIPREAARVGER 184
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++ I V R RGPQ+ L+R HP FM KLF EVPEIY+GI+++KA +RDPGSRAK+ V
Sbjct: 185 VRALISKVERNNRGPQIFLTRAHPDFMKKLFAQEVPEIYDGIIEIKAAARDPGSRAKIGV 244
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S DSSIDPVGACVGM+GSRVQAVV EL+ EKIDI+ WS + ATF++NAL+PA V++VVL
Sbjct: 245 ISHDSSIDPVGACVGMKGSRVQAVVQELQGEKIDIIPWSEEEATFIVNALQPATVSRVVL 304
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED RIEV+VP +QLSLAIGRRGQNVRLASQLTG IDI+TEEE S + K+F R++
Sbjct: 305 DEDESRIEVVVPDDQLSLAIGRRGQNVRLASQLTGNQIDIMTEEEASEKQSKEFAARSKM 364
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F + ++VDE ++ LLVAEGFA++EE+A V++ E+A IEGFDEE A E+Q RA E LE +
Sbjct: 365 FEEELDVDETLSQLLVAEGFAELEEVAYVQLDELAMIEGFDEELAEELQSRATEALERQE 424
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG--------- 472
++ RELGV + L +P + + V LG+ G+KT++D+A + D+L+
Sbjct: 425 AAHREARRELGVEDALADLPHLSEAMLVTLGKAGLKTLDDVADLATDELIAKKREAPRRR 484
Query: 473 ---------WSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523
++ + G L G ++Q +I+ AR W E E+ A
Sbjct: 485 NNANADGPPMRRDRPQREQDKGGVLGEYGLTEEQGNEIIMAARAH--WFEDEEPAKPATA 542
Query: 524 DA 525
Sbjct: 543 SE 544
>gi|170727895|ref|YP_001761921.1| transcription elongation factor NusA [Shewanella woodyi ATCC 51908]
gi|169813242|gb|ACA87826.1| NusA antitermination factor [Shewanella woodyi ATCC 51908]
Length = 499
Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats.
Identities = 201/515 (39%), Positives = 317/515 (61%), Gaps = 23/515 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L +A+AV+ EK + R+ + + ++ A + Y ++RV+I+ +TG FR
Sbjct: 2 NKEILLVAEAVSNEKGVPREKIFEALEIALATATKKKYEGDIEVRVQIDRKTGGYETFRR 61
Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
VVE+ +EN +I+L+ A+ DP I +G + D + + F R+ Q+AKQVI+QK
Sbjct: 62 WMVVEDTGEPLENPFSEITLEAAQFEDPEIQLGDYIEDDIESVVFDRITTQTAKQVIVQK 121
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180
VREAER + +F+DK GE+I+G VK+ +V+VDLGN+ D V+ +++ ISRE+ RPGD
Sbjct: 122 VREAERAQVVDQFRDKEGELITGVVKKSNRESVVVDLGNNADAVLFKEDLISRESFRPGD 181
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
RV++ +Y VR E RG Q+ L+RT P +++LF +EVPEI + ++++ +RDPGSRAK+A
Sbjct: 182 RVRALLYAVRPEARGAQLFLTRTKPDMLIELFRVEVPEIQDEMIEIMGAARDPGSRAKIA 241
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A FVINA+ PA V ++
Sbjct: 242 VKSNDKRIDPIGACVGMRGARVQAVSNELNGERVDIVLWDDNPAQFVINAMSPADVASII 301
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DED +++ V + L+ AIGR GQNVRLA+QL+GW ++++T + Q + +
Sbjct: 302 VDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLSGWELNVMTVADMQAKHQAESAKIVN 361
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
F+ A+ VDE A +L EGF +EE+A V SE+ I+GFDEE ++ RA+ +
Sbjct: 362 LFVSALEVDEDFAQVLADEGFTSLEEVAYVPESELMEIDGFDEEIVEALRERAKAAISTR 421
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ ++ + SE+L ++ G++ + L G+ T+EDLA +DDL+ E
Sbjct: 422 ALASEEALDGAEPSEDLLALEGLERHLAFVLASKGVITLEDLAEQGIDDLIDIEE----- 476
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
+++ +I+ AR + W +E
Sbjct: 477 ------------LTEEKAGELIMAAR-NICWFGEE 498
>gi|300718578|ref|YP_003743381.1| transcription elongation protein [Erwinia billingiae Eb661]
gi|299064414|emb|CAX61534.1| Transcription elongation protein [Erwinia billingiae Eb661]
Length = 495
Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats.
Identities = 203/511 (39%), Positives = 318/511 (62%), Gaps = 19/511 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALESALATATKKKYEQEIEVRVSIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+V+EV T +I+L AR D ++++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WVIVDEVTMPTREITLDAARYEDEALNLGEYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184
ER +F+ + GEII+G VK+V N+ +DLG N++ VI R++ + REN RPGDR++
Sbjct: 122 ERAMVVDQFRQQEGEIITGVVKKVNRDNISLDLGSNAEAVIIREDMLPRENFRPGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y VR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYAVRPEARGAQLFVSRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + F +
Sbjct: 302 NHTMDIAVEAGNLAQAIGRNGQNVRLAAQLSGWELNVMTVDDLQAKHQAEAHAAIDVFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A +LV EGF+ +EELA V I+E+ I+G DEET ++ RA+ L + +
Sbjct: 362 HLDIDEDFATVLVEEGFSSLEELAYVPINELLEIDGLDEETVEALRDRAKNALTTLALAK 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + + +E+L ++ G+D ++ L G+ T+EDLA VDDL
Sbjct: 422 EESLGDNQPAEDLLNLEGLDRELAFKLAAIGVCTLEDLAEQGVDDLTDIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G +Q +I+ AR + W +
Sbjct: 472 -------GLNDEQAGELIMAAR-NICWFGDD 494
>gi|327396260|dbj|BAK13682.1| transcription elongation protein NusA [Pantoea ananatis AJ13355]
Length = 495
Score = 481 bits (1239), Expect = e-133, Method: Composition-based stats.
Identities = 204/511 (39%), Positives = 319/511 (62%), Gaps = 19/511 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVSIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
E+VE+V T +I+L AR D S+++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WEIVEQVTQPTREITLDAARYEDESLNLGEYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F+++ GEII+G VK+V N+ +DLGN+ + VI R++ + REN RPGDR++
Sbjct: 122 ERAMVVDQFREQEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVLEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F +
Sbjct: 302 NHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDMFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A +LV EGF+ +EE+A V I+E+ I+G DEET ++ RA+ L + +
Sbjct: 362 HLDIDEEFATILVEEGFSTLEEMAYVPINELLEIDGLDEETIEALRERAKNALTTLALAK 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + +E+L ++ G+D + L G+ T+EDLA VDDL
Sbjct: 422 EESLGNQEPAEDLLNLEGLDRALAFRLASKGVCTLEDLAEQGVDDLTDIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G +Q ++I+ AR + W +
Sbjct: 472 -------GLTDEQAGALIMAAR-NICWFGDD 494
>gi|161506147|ref|YP_001573259.1| transcription elongation factor NusA [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160867494|gb|ABX24117.1| hypothetical protein SARI_04337 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 500
Score = 481 bits (1239), Expect = e-133, Method: Composition-based stats.
Identities = 201/516 (38%), Positives = 318/516 (61%), Gaps = 24/516 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPG 179
ER +F+D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPG
Sbjct: 122 ERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPG 181
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
DR++ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+
Sbjct: 182 DRIRGVLYAVRPEARGAQLFVTRSRPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 241
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +
Sbjct: 242 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 301
Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + +
Sbjct: 302 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAETHAAI 361
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+ F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L
Sbjct: 362 EIFTKHLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALAT 421
Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479
+ ++ + + +++L ++ G+D + L G+ T+EDLA +DDL
Sbjct: 422 LAQAQEESLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIE----- 476
Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ +I+ AR + W E
Sbjct: 477 ------------GLTDEKAGELIMAAR-NICWFGDE 499
>gi|119774097|ref|YP_926837.1| transcription elongation factor NusA [Shewanella amazonensis SB2B]
gi|119766597|gb|ABL99167.1| NusA antitermination factor [Shewanella amazonensis SB2B]
Length = 499
Score = 481 bits (1239), Expect = e-133, Method: Composition-based stats.
Identities = 207/515 (40%), Positives = 321/515 (62%), Gaps = 23/515 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L +A+AV+ EK++ R+ + + ++ A + Y D+RV I+ +TGD FR
Sbjct: 2 NKEILLVAEAVSNEKAVPREKIFEALETALATATKKKYEGDIDVRVAIDRKTGDYETFRR 61
Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
VVE+ +EN +I+L+ A+ +P I +G + D + + F R+ Q+AKQVI+QK
Sbjct: 62 WMVVEDNGEALENPYREITLEAAQYENPEIQVGEFIEDEIESVVFDRITTQTAKQVIVQK 121
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180
VREAER + +F DK GEII+G VK+ +VIVDLGN+ DGV+ +++ I+RE+ RPGD
Sbjct: 122 VREAERAQVVEQFYDKEGEIITGVVKKSNRDSVIVDLGNNADGVLYKEDLIARESFRPGD 181
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
RV++ +Y VR E RG Q+ L+RT P+ +++LF +EVPEI + ++QV +RDPGSRAK+A
Sbjct: 182 RVRALLYAVRPEARGAQLYLTRTKPEMLIELFRVEVPEIADEMIQVMGAARDPGSRAKIA 241
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A FVINA+ PA V ++
Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQFVINAMAPADVASII 301
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DED +++ V + L+ AIGR GQNVRLA+QLTGW ++++T + + Q + +
Sbjct: 302 VDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLTGWELNVMTVADMNAKHQAESAKVVA 361
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
FM +++VDE A +L EGF +EE+A V ++E+ +I+GFDE+ ++ RA+ +
Sbjct: 362 LFMASLDVDEDFAQVLADEGFTSLEEVAYVPVAELLAIDGFDEDIVEALRERAKAAISTR 421
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ ++ + SEEL ++ G+D + L G+ T+EDLA +DDL+ E
Sbjct: 422 ALASEEALDGAEPSEELLNLEGMDRHLAFVLASRGVVTLEDLAEQGIDDLIEIEELTEEK 481
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
++I+ AR + W +E
Sbjct: 482 -----------------AGALIMAAR-NICWFGEE 498
>gi|304310506|ref|YP_003810104.1| N utilization substance protein A [gamma proteobacterium HdN1]
gi|301796239|emb|CBL44447.1| N utilization substance protein A [gamma proteobacterium HdN1]
Length = 494
Score = 481 bits (1239), Expect = e-133, Method: Composition-based stats.
Identities = 208/509 (40%), Positives = 319/509 (62%), Gaps = 23/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66
E+L + + V+ EK + RDV+ + ++ A + + +D+RV IN TG +R
Sbjct: 4 EILLVVETVSNEKGVPRDVIFEAVETALATATKKRFPNEDADVRVSINRTTGAYDTWRRW 63
Query: 67 EVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV E+ E ++L A D D IG + + +P +DFGR+A Q+AKQVI+QKVRE
Sbjct: 64 TVVLDEDFEFPGRHMTLDEAHDHDTKYKIGDIYEEKIPSIDFGRIAAQTAKQVIVQKVRE 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVK 183
AER + F DK+G +++G VK+V NVI+DLG + + ++ R++ I RE LR DRV+
Sbjct: 124 AERAQIADAFSDKIGHLVNGVVKKVTRDNVILDLGGNAEALLPREDLIGRETLRVNDRVR 183
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
++ + +E RG Q+ +SR P+ +++LF +EVPEI I+++KA +RDPGSRAK+AV +
Sbjct: 184 GVLFSINKENRGAQLYVSRARPEMLIELFKIEVPEIGEDIIEIKAAARDPGSRAKIAVKT 243
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
+D IDPVGACVGMRGSRVQAV EL E+IDIV+W + A FVINA+ PA V +V+DE
Sbjct: 244 NDQRIDPVGACVGMRGSRVQAVSNELGGERIDIVLWDDNPAQFVINAMSPAEVVSIVVDE 303
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
+ +++ V +EQL+LAIGR GQN+RLAS+L+GW ++++T ++ ++++ + FM
Sbjct: 304 ESHSMDIAVEEEQLALAIGRGGQNIRLASELSGWELNVMTVKDAEAKQRQESESYLKVFM 363
Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423
+ VDE +A +LV EGFA VEE+A V E+ SIEGFDE+ E++ RA+ L +
Sbjct: 364 DELGVDEELAQVLVDEGFASVEEVAYVPKEEMLSIEGFDEDLVDELRSRAKNALLTRALV 423
Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483
+++ + +++L S+ G+D ++ +AL + GI TMEDLA +VDDLL
Sbjct: 424 DEEQNQGGSPADDLLSMEGMDKELALALAKKGICTMEDLAEQAVDDLLDIE--------- 474
Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWI 512
++ ++I+ AR W
Sbjct: 475 --------NLDAEKAAALIMTARAP--WF 493
>gi|156975664|ref|YP_001446571.1| transcription elongation factor NusA [Vibrio harveyi ATCC BAA-1116]
gi|156527258|gb|ABU72344.1| hypothetical protein VIBHAR_03397 [Vibrio harveyi ATCC BAA-1116]
Length = 495
Score = 481 bits (1239), Expect = e-133, Method: Composition-based stats.
Identities = 205/509 (40%), Positives = 320/509 (62%), Gaps = 19/509 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L +A+AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG+ FR
Sbjct: 4 EILAVAEAVSNEKAVPRERIFEALEIALATSTKKKYEIEIDVRVAIDRKTGEFETFRRWL 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVE+VEN T +ISL+ A+ D I +G V D +P + F R+ Q+AKQVI+QKVREAER
Sbjct: 64 VVEDVENPTKEISLEAAQYEDADIQLGDFVEDDIPSVTFDRITTQTAKQVIVQKVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186
+ +F D G++I+G VK+V V++DLGN+ + VI RD+ + REN RPGDRV+ +
Sbjct: 124 AQIVEQFIDNEGDLITGVVKKVNRETVVLDLGNNAEAVILRDDQLPRENFRPGDRVRGLL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
Y V E RG Q+ ++R+ P+ + +LF +EVPEI I+++K +RDPGSRAK+AV ++D
Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIAEEIIELKGAARDPGSRAKIAVKTNDK 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED
Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDAH 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V + L+ AIGR GQNVRLASQLTGW ++++T + ++ + FM+ +
Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHAEESQASIENFMKYL 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426
+++E A LLV EGF+ +EE+A V ++E+ ++G +EE E++ RA++ L I + ++
Sbjct: 364 DIEEDFAQLLVEEGFSTLEEIAYVPVNELLDVDGLNEELVEELRSRAKDALTTIALAQEE 423
Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486
L +E+L + G++ ++ L G+ T+EDLA +DDL G
Sbjct: 424 SFEGLEPAEDLLGLEGLEREMAFKLAAKGVATLEDLADQGIDDLEGIE------------ 471
Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G +++ +I+ AR + W +E
Sbjct: 472 -----GLTEERAGELIMAAR-NICWFGEE 494
>gi|330813317|ref|YP_004357556.1| transcription termination protein NusA [Candidatus Pelagibacter sp.
IMCC9063]
gi|327486412|gb|AEA80817.1| transcription termination protein NusA [Candidatus Pelagibacter sp.
IMCC9063]
Length = 514
Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats.
Identities = 263/505 (52%), Positives = 366/505 (72%)
Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64
+ EL++IADAVA EKSI +D+VL+ M +I+KAA++ YG ++I V I+ TG I L R
Sbjct: 7 DSTELIRIADAVADEKSISKDLVLTSMESAIEKAAKTRYGNENEIYVVIDRATGKIELGR 66
Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
L+VVE+V N +I L A +++ I +V++ LPP+DFGR+A Q+AKQVI ++R+
Sbjct: 67 KLKVVEKVMNTHSEIGLGEALEKNSEAKIDDIVNEELPPVDFGRIAAQTAKQVISHQIRD 126
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AERDRQ+ EFKDKVGEI+SG VKR EYGNVIVDL S+ +IRR+E I RENL+ GDR+K+
Sbjct: 127 AERDRQFEEFKDKVGEILSGIVKRSEYGNVIVDLQKSEAIIRREELIPRENLKNGDRIKA 186
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
Y YDVRRE +GPQ+ LSR HPQF+ KLFH EVPEIY G + +K+V+RDPGSRAK+ V S
Sbjct: 187 YCYDVRRESKGPQIFLSRAHPQFLAKLFHQEVPEIYEGTIGIKSVARDPGSRAKICVQSK 246
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
DSSIDPVGACVGMRGSRVQA+V EL+ EKIDI+ W+ D+++ V +AL PA V KV++ ED
Sbjct: 247 DSSIDPVGACVGMRGSRVQAIVNELQGEKIDIINWTEDASSLVKSALSPAEVMKVIIAED 306
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
RIEV++ ++ LS AIGRRGQNVRLAS+L + IDI+T++E+S RQ +F + T+ ++
Sbjct: 307 DRRIEVVIDEDNLSKAIGRRGQNVRLASKLLDYEIDILTDKEESEKRQTEFKDNTEKLVK 366
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++ +D +A LLVAEGF + +A + E IEGFDEET+ E+Q RA+EY++ +
Sbjct: 367 SLEIDTTMAQLLVAEGFPTINAIANASLPEFLKIEGFDEETSTELQNRAKEYIQEEAEEV 426
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
KK++ELG+ ++L + G+ + + LGE+ IKT++D A + D+L+G + G EKF
Sbjct: 427 SKKVKELGIEDDLATHKGLSLGMLLILGEDNIKTLKDFAELATDELIGGYDEIKGKREKF 486
Query: 485 DGFLSSLGTPKDQVESMIIHARYKM 509
DG L + + +I+ AR K+
Sbjct: 487 DGILEEFDISRKDADDLIMRARKKV 511
>gi|226946308|ref|YP_002801381.1| transcription elongation factor NusA [Azotobacter vinelandii DJ]
gi|226721235|gb|ACO80406.1| Transcription termination factor NusA [Azotobacter vinelandii DJ]
Length = 493
Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats.
Identities = 218/509 (42%), Positives = 330/509 (64%), Gaps = 22/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + ++V+ EK + V+ + ++ A + Y D+RV+IN ++G FR
Sbjct: 4 EVLLVVESVSNEKGVPAGVIFEALELALATATKKRYEDDVDLRVQINRQSGAYDTFRRWT 63
Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVE+ +EN +++L AR+R P + +G V+ + + ++FGR+A Q+AKQVI+QKVREA
Sbjct: 64 VVEDDLLENPAAELTLDEARERKPDVRVGDVIEEKIESIEFGRIAAQTAKQVIVQKVREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER + ++++VGEIISGTVK+V NVIVDLGN+ + ++ R++ I RE R G RV++
Sbjct: 124 ERAQVVDVYRERVGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIIPRETFRVGARVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ ++R E RGPQ++LSRT P +++LF +EVPEI G+++VKA SRDPGSRAK+AV S
Sbjct: 184 LLKEIRPENRGPQLILSRTAPGMLIELFRIEVPEIAEGLIEVKAASRDPGSRAKIAVRSK 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED
Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMAPAEVAAIIVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V V + L+ AIGR GQNVRLASQLTGWT++++TE + ++ + + + F++
Sbjct: 304 AHAMDVAVADDNLAQAIGRGGQNVRLASQLTGWTLNVMTEGDIQAKQRAETGDILRSFVE 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+ VDE +A +LV EGF +EE+A V + E+ +I+GFDEE E++ RA++ L I
Sbjct: 364 ELEVDEELAQVLVEEGFTSLEEIAYVPMEEMLAIDGFDEEIVNELRARAKDRLLTKAIAT 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ E +E+L S+ G+D ++ V L G+ T EDLA S+DDLL
Sbjct: 424 EEKLVEAHPAEDLLSLEGMDKELAVELAMRGVITREDLAEQSIDDLLDID---------- 473
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513
G +++ +I+ AR W E
Sbjct: 474 -------GMDEERAGKLIMAARAH--WFE 493
>gi|283836285|ref|ZP_06356026.1| L factor [Citrobacter youngae ATCC 29220]
gi|291067648|gb|EFE05757.1| L factor [Citrobacter youngae ATCC 29220]
Length = 500
Score = 481 bits (1237), Expect = e-133, Method: Composition-based stats.
Identities = 203/516 (39%), Positives = 318/516 (61%), Gaps = 24/516 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WVIVEEVTQPTKEITLEAARFEDESLNVGEYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPG 179
ER +F+D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPG
Sbjct: 122 ERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPG 181
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
DR++ +Y VR E RG Q+ ++R+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+
Sbjct: 182 DRIRGVLYAVRPEARGAQLFVTRSKPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAKI 241
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +
Sbjct: 242 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 301
Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + +
Sbjct: 302 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAI 361
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
F + +++DE A +LV EGFA +EELA V + E+ I+G DE T ++ RA+ L
Sbjct: 362 DTFTKYLDIDEDFATVLVEEGFATLEELAYVPMKELLEIDGLDEPTVEALRERAKNALTT 421
Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479
+ + ++ + + +++L ++ G+D + L G+ T+EDLA +DDL
Sbjct: 422 LALAQEESLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLAEQGIDDLADIE----- 476
Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ +I+ AR + W E
Sbjct: 477 ------------GLTDEKAGELIMAAR-NICWFGDE 499
>gi|269961979|ref|ZP_06176334.1| N utilization substance protein A [Vibrio harveyi 1DA3]
gi|269833302|gb|EEZ87406.1| N utilization substance protein A [Vibrio harveyi 1DA3]
Length = 495
Score = 481 bits (1237), Expect = e-133, Method: Composition-based stats.
Identities = 205/509 (40%), Positives = 320/509 (62%), Gaps = 19/509 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L +A+AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG+ FR
Sbjct: 4 EILAVAEAVSNEKAVPRERIFEALEIALATSTKKKYEIEIDVRVAIDRKTGEFETFRRWL 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVE+VEN T +ISL+ A+ D I +G V D +P + F R+ Q+AKQVI+QKVREAER
Sbjct: 64 VVEDVENPTKEISLEAAQYEDADIQLGDFVEDDIPSVTFDRITTQTAKQVIVQKVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186
+ +F D G++I+G VK+V V++DLGN+ + VI RD+ + REN RPGDRV+ +
Sbjct: 124 AQIVEQFIDNEGDLITGVVKKVNRETVVMDLGNNAEAVILRDDQLPRENFRPGDRVRGLL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
Y V E RG Q+ ++R+ P+ + +LF +EVPEI I+++K +RDPGSRAK+AV ++D
Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIAEEIIELKGAARDPGSRAKIAVKTNDK 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED
Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDAH 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V + L+ AIGR GQNVRLASQLTGW ++++T + ++ + FM+ +
Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHAEESQASIENFMKYL 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426
+++E A LLV EGF+ +EE+A V ++E+ ++G +EE E++ RA++ L I + ++
Sbjct: 364 DIEEDFAQLLVEEGFSTLEEIAYVPVNELLDVDGLNEELVEELRSRAKDALTTIALAQEE 423
Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486
L +E+L + G++ ++ L G+ T+EDLA +DDL G
Sbjct: 424 SFEGLEPAEDLLGLEGLEREMAFKLAAKGVATLEDLADQGIDDLEGIE------------ 471
Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G +++ +I+ AR + W +E
Sbjct: 472 -----GLTEERAGELIMAAR-NICWFGEE 494
>gi|326388032|ref|ZP_08209636.1| transcription elongation factor NusA [Novosphingobium
nitrogenifigens DSM 19370]
gi|326207533|gb|EGD58346.1| transcription elongation factor NusA [Novosphingobium
nitrogenifigens DSM 19370]
Length = 551
Score = 481 bits (1237), Expect = e-133, Method: Composition-based stats.
Identities = 281/526 (53%), Positives = 377/526 (71%), Gaps = 15/526 (2%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
+SANR ELL IA+AVA EK ID+ +V+ M ++IQK+AR+ YG +DIR +++P +GD+
Sbjct: 5 ISANRAELLAIANAVASEKMIDKSIVIEAMEEAIQKSARNRYGAENDIRAKLDPRSGDLR 64
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L+R++EVVE VE+Y Q+ LK A P IG + DPLPP+D GR+ QSAKQVI QK
Sbjct: 65 LWRVVEVVEHVEDYFKQVDLKQAEKLQPGAKIGDFIVDPLPPVDLGRIDAQSAKQVIFQK 124
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VR+AER+RQY EFKD+ GEII+G +K VE+G+VIV+LG ++GVIRRD+ I RE R G+R
Sbjct: 125 VRDAERERQYDEFKDRAGEIITGVIKSVEFGHVIVNLGRAEGVIRRDQQIPREVPRVGER 184
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++ I V R RGPQ+ LSR HP FM +LF EVPEIY+GI+++KA +RDPGSRAK+ V
Sbjct: 185 VRALILRVERTNRGPQIFLSRAHPDFMKRLFAQEVPEIYDGIIEIKAAARDPGSRAKIGV 244
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S DSSIDPVGACVGM+GSRVQAVV EL+ EKIDI+ WS D+ATFV+NAL+PA V++VV+
Sbjct: 245 ISRDSSIDPVGACVGMKGSRVQAVVQELQGEKIDIIPWSEDTATFVVNALQPATVSRVVI 304
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DE+ RIEV+VP +QLSLAIGRRGQNVRLAS LTG IDI+TE E S RQK+F ER++
Sbjct: 305 DEEESRIEVVVPDDQLSLAIGRRGQNVRLASSLTGSAIDIMTEAEASEKRQKEFTERSKT 364
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F + ++VDE ++ LLVAEGF+++EE+ + I+E+A+IEGFDEE A E+Q RA E LE +
Sbjct: 365 FEEELDVDETLSQLLVAEGFSELEEVGYIDIAELATIEGFDEELATELQNRALEALERRE 424
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---------- 471
+++ R LGV + L +P + + V LG+ GIKT++DLA + D+L+
Sbjct: 425 EGQRQERRALGVEDALADLPHLTEAMLVTLGKAGIKTLDDLADLATDELIARKRGGEQRR 484
Query: 472 ---GWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
++ E G L G ++Q +I+ AR W +
Sbjct: 485 RGGNDRRDRSERSEDKGGVLGEYGLNEEQGNEIIMAARAH--WFDD 528
>gi|311277858|ref|YP_003940089.1| NusA antitermination factor [Enterobacter cloacae SCF1]
gi|308747053|gb|ADO46805.1| NusA antitermination factor [Enterobacter cloacae SCF1]
Length = 500
Score = 481 bits (1237), Expect = e-133, Method: Composition-based stats.
Identities = 203/516 (39%), Positives = 318/516 (61%), Gaps = 24/516 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WVIVEEVTQPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPG 179
ER +F+D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPG
Sbjct: 122 ERAMVVDQFRDQEGEIVTGMVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPG 181
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
DR++ +Y VR E RG Q+ ++R+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+
Sbjct: 182 DRIRGVLYAVRPEARGAQLFVTRSKPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAKI 241
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +
Sbjct: 242 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 301
Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + +
Sbjct: 302 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAI 361
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
F + +++DE A +LV EGF+ +EELA V + E+ I+G DE+T ++ RA+ L
Sbjct: 362 DTFTKYLDIDEEFATVLVEEGFSSLEELAYVPMKELLEIDGLDEDTVEALRERAKNALTT 421
Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479
+ + ++ + +++L ++ G+D + L G+ T+EDLA VDDL E
Sbjct: 422 LALAQEESLGNNKPADDLLNLEGLDRAMAFKLAARGVCTLEDLAEQGVDDLADIEE---- 477
Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
++ +I+ AR + W E
Sbjct: 478 -------------MTDEKAGELIMAAR-NICWFGDE 499
>gi|192361293|ref|YP_001980958.1| transcription elongation factor NusA [Cellvibrio japonicus Ueda107]
gi|190687458|gb|ACE85136.1| N utilization substance protein A [Cellvibrio japonicus Ueda107]
Length = 493
Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats.
Identities = 216/510 (42%), Positives = 331/510 (64%), Gaps = 22/510 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L +ADAV+ EK +D++++ + ++ A + + S I V IN TGD +R
Sbjct: 2 NKEILLVADAVSNEKGVDKELIFQAIETALATATKKRFDEDSTIEVIINRTTGDYETWRS 61
Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+VV + + Q +L+ A ++D S+ G V + + +FGR+A Q+AKQVI+QKVR
Sbjct: 62 WDVVSDDILAELGTQFTLEEAHEKDTSLKAGDVYREKIENAEFGRIAAQTAKQVIVQKVR 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182
EAER + E++D++GE++SGTVK+V ++IVDLGN+ +GV+ RD+ I RE R GDRV
Sbjct: 122 EAERAQMVDEYRDRMGELVSGTVKKVTRDSIIVDLGNNAEGVLPRDQLIGREIFRMGDRV 181
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
++ + DVR E RGPQ+LLSR+ PQ +V+LF +EVPEI ++++K +RDPG RAK+AV
Sbjct: 182 RALLLDVRTEARGPQLLLSRSAPQMLVELFKIEVPEIAEEVIEIKGAARDPGLRAKIAVK 241
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
++D IDPVGACVGMRGSRVQAV EL E++DIV+W + A FVINA+ PA + +V+D
Sbjct: 242 TNDGRIDPVGACVGMRGSRVQAVSNELGGERVDIVLWDDNPAQFVINAMSPAEIESIVVD 301
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
ED +++ V +E L++AIGR GQNVRLA +LTGW I++++ + ++ + Q F
Sbjct: 302 EDARSMDLAVNEENLAMAIGRGGQNVRLACELTGWNINVMSVADWQAKQEAESGSYIQIF 361
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
M A++VDE IA +LV EGF +EE+A V + E+ +I+GFD++ A E++ RA++ L +
Sbjct: 362 MSALDVDEDIAGVLVEEGFTTLEEVAYVPLEEMLAIDGFDQDIAEELRARAKDALLTQAL 421
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482
++++ + +E+L S+ G+DS++ + L GI TMEDLA S+DDLL
Sbjct: 422 ASEERLEGVAPAEDLLSMEGMDSQLAIRLASRGIVTMEDLAEQSIDDLLDIE-------- 473
Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWI 512
G + + ++I+ AR W
Sbjct: 474 ---------GVDETRAAALIMKAREP--WF 492
>gi|168237988|ref|ZP_02663046.1| transcription termination/antitermination factor NusA [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|194733934|ref|YP_002116237.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|194709436|gb|ACF88657.1| transcription termination/antitermination factor NusA [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|197289151|gb|EDY28520.1| transcription termination/antitermination factor NusA [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
Length = 500
Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats.
Identities = 201/516 (38%), Positives = 317/516 (61%), Gaps = 24/516 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPG 179
ER +F+D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPG
Sbjct: 122 ERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPG 181
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
DR++ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+
Sbjct: 182 DRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 241
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +
Sbjct: 242 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 301
Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + +
Sbjct: 302 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAI 361
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+ F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L
Sbjct: 362 EIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALTT 421
Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479
+ + + + +++L ++ G+D + L G+ T+EDLA +DDL
Sbjct: 422 LAQDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIE----- 476
Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ +I+ AR + W E
Sbjct: 477 ------------GLTDEKAGELIMAAR-NICWFGDE 499
>gi|16766585|ref|NP_462200.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|56415219|ref|YP_152294.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|62181798|ref|YP_218215.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|161616293|ref|YP_001590258.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|167552065|ref|ZP_02345818.1| transcription termination/antitermination factor NusA [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|167990148|ref|ZP_02571248.1| transcription termination/antitermination factor NusA [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|168231896|ref|ZP_02656954.1| transcription termination/antitermination factor NusA [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
gi|168243121|ref|ZP_02668053.1| transcription termination/antitermination factor NusA [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|168262702|ref|ZP_02684675.1| transcription termination/antitermination factor NusA [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|168463490|ref|ZP_02697407.1| transcription termination/antitermination factor NusA [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|168819644|ref|ZP_02831644.1| transcription termination/antitermination factor NusA [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|194442917|ref|YP_002042544.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194450306|ref|YP_002047316.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194469393|ref|ZP_03075377.1| transcription termination/antitermination factor NusA [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|197248686|ref|YP_002148213.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197265797|ref|ZP_03165871.1| transcription termination/antitermination factor NusA [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|197364149|ref|YP_002143786.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|198243925|ref|YP_002217260.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|200388465|ref|ZP_03215077.1| transcription termination/antitermination factor NusA [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|204928046|ref|ZP_03219246.1| transcription termination/antitermination factor NusA [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|207858537|ref|YP_002245188.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|224585085|ref|YP_002638884.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|238910082|ref|ZP_04653919.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|20141550|sp|P37430|NUSA_SALTY RecName: Full=Transcription elongation protein nusA; AltName:
Full=L factor; AltName: Full=N utilization substance
protein A
gi|16421846|gb|AAL22159.1| L factor [Salmonella enterica subsp. enterica serovar Typhimurium
str. LT2]
gi|56129476|gb|AAV78982.1| L factor [Salmonella enterica subsp. enterica serovar Paratyphi A
str. ATCC 9150]
gi|62129431|gb|AAX67134.1| transcription pausing; L factor [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|161365657|gb|ABX69425.1| hypothetical protein SPAB_04099 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194401580|gb|ACF61802.1| transcription termination/antitermination factor NusA [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|194408610|gb|ACF68829.1| transcription termination/antitermination factor NusA [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|194455757|gb|EDX44596.1| transcription termination/antitermination factor NusA [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|195633199|gb|EDX51613.1| transcription termination/antitermination factor NusA [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|197095626|emb|CAR61194.1| L factor [Salmonella enterica subsp. enterica serovar Paratyphi A
str. AKU_12601]
gi|197212389|gb|ACH49786.1| transcription termination/antitermination factor NusA [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|197244052|gb|EDY26672.1| transcription termination/antitermination factor NusA [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|197938441|gb|ACH75774.1| transcription termination/antitermination factor NusA [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|199605563|gb|EDZ04108.1| transcription termination/antitermination factor NusA [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|204322368|gb|EDZ07565.1| transcription termination/antitermination factor NusA [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|205323222|gb|EDZ11061.1| transcription termination/antitermination factor NusA [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|205331138|gb|EDZ17902.1| transcription termination/antitermination factor NusA [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|205333927|gb|EDZ20691.1| transcription termination/antitermination factor NusA [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
gi|205337851|gb|EDZ24615.1| transcription termination/antitermination factor NusA [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|205343493|gb|EDZ30257.1| transcription termination/antitermination factor NusA [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|205348590|gb|EDZ35221.1| transcription termination/antitermination factor NusA [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|206710340|emb|CAR34698.1| L factor [Salmonella enterica subsp. enterica serovar Enteritidis
str. P125109]
gi|224469613|gb|ACN47443.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|261248453|emb|CBG26290.1| L factor [Salmonella enterica subsp. enterica serovar Typhimurium
str. D23580]
gi|267995484|gb|ACY90369.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301159837|emb|CBW19356.1| transcription termination/antitermination L factor [Salmonella
enterica subsp. enterica serovar Typhimurium str.
SL1344]
gi|312914313|dbj|BAJ38287.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|320087734|emb|CBY97498.1| Transcription elongation protein nusA N utilization substance
protein A; L factor [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|321225971|gb|EFX51025.1| Transcription termination protein NusA [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|322615292|gb|EFY12213.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322618349|gb|EFY15240.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322622846|gb|EFY19690.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322626832|gb|EFY23629.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322631401|gb|EFY28161.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322635332|gb|EFY32046.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322643467|gb|EFY40030.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322647097|gb|EFY43598.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322648900|gb|EFY45345.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322655092|gb|EFY51403.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322657695|gb|EFY53963.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322664191|gb|EFY60389.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322667474|gb|EFY63636.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322674722|gb|EFY70814.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322675645|gb|EFY71718.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322682281|gb|EFY78304.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322684884|gb|EFY80882.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|322716285|gb|EFZ07856.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
gi|323131647|gb|ADX19077.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
gi|323191869|gb|EFZ77117.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323199028|gb|EFZ84125.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323204272|gb|EFZ89281.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323207619|gb|EFZ92566.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|323211328|gb|EFZ96172.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323214730|gb|EFZ99479.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323221210|gb|EGA05636.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323224049|gb|EGA08342.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323230302|gb|EGA14421.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323233278|gb|EGA17372.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323239315|gb|EGA23365.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323242434|gb|EGA26460.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323246944|gb|EGA30910.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323254123|gb|EGA37943.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323255240|gb|EGA39017.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323262703|gb|EGA46259.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323264013|gb|EGA47521.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323269399|gb|EGA52854.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|326625038|gb|EGE31383.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Dublin str. 3246]
gi|332990145|gb|AEF09128.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 500
Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats.
Identities = 201/516 (38%), Positives = 317/516 (61%), Gaps = 24/516 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPG 179
ER +F+D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPG
Sbjct: 122 ERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPG 181
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
DR++ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+
Sbjct: 182 DRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 241
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +
Sbjct: 242 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 301
Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + +
Sbjct: 302 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAI 361
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+ F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L
Sbjct: 362 EIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALAT 421
Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479
+ + + + +++L ++ G+D + L G+ T+EDLA +DDL
Sbjct: 422 LAQDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIE----- 476
Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ +I+ AR + W E
Sbjct: 477 ------------GLTDEKAGELIMAAR-NICWFGDE 499
>gi|114329058|ref|YP_746215.1| transcription elongation factor NusA [Granulibacter bethesdensis
CGDNIH1]
gi|114317232|gb|ABI63292.1| n utilization substance protein A [Granulibacter bethesdensis
CGDNIH1]
Length = 512
Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats.
Identities = 290/519 (55%), Positives = 370/519 (71%), Gaps = 16/519 (3%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
+ +R ELL +ADAVA EKSIDR+ VL M +IQKA R+ YG DIR I+ +TGD+
Sbjct: 8 TAISRPELLLVADAVAREKSIDREEVLEAMEQAIQKAGRAKYGHEKDIRATIDRKTGDVR 67
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L R E VE VEN QI + +AR P I++GG + DPLPP+DFGR+A Q+AKQVI+Q+
Sbjct: 68 LSRWTEAVEVVENEETQIPIHIARKFKPDIELGGHLVDPLPPIDFGRIAAQTAKQVIVQR 127
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VRE ER RQY EFKD+VGEII+G VKR EYGN++VDLG S+ ++RRDE I+RE+ R GDR
Sbjct: 128 VREYERRRQYDEFKDRVGEIINGVVKRTEYGNLMVDLGKSEALLRRDELIARESFRNGDR 187
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++YIYDVR E RGPQ+ LSRTHP F+ KLF EVPEIY+GI+++KAVSRDPGSRAK+AV
Sbjct: 188 VRAYIYDVREEPRGPQIFLSRTHPNFLAKLFAQEVPEIYDGIIEIKAVSRDPGSRAKMAV 247
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSP +ATFV+NAL PA VTKVV+
Sbjct: 248 ISRDQSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPQAATFVVNALAPAEVTKVVM 307
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DE+ GR+EV+VP +QLSLAIGRRGQNVRLASQLT W IDI+TE E+S RQ++F +RT
Sbjct: 308 DEEAGRVEVVVPDDQLSLAIGRRGQNVRLASQLTRWDIDILTEAEESERRQEEFRKRTSL 367
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F+ A++VD++IA LLV EGF VEELA + E++ IEGFDE A E+ RA L
Sbjct: 368 FVDALDVDDVIAGLLVTEGFTTVEELAFSPVEELSEIEGFDENVAEELIRRAEVDLTRRA 427
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ K + LGV++E+ I + + VALGE G+KT++DLA + D+L+ +
Sbjct: 428 NEMDDKRKALGVTDEIADIETLTPAMLVALGEKGVKTLDDLADLAGDELVEIVGSDA--- 484
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADE 520
++ +I+ AR W E+ +
Sbjct: 485 -----------MDEETANEIIMAARAH--WFTDEEQEAD 510
>gi|205354191|ref|YP_002227992.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205273972|emb|CAR38977.1| L factor [Salmonella enterica subsp. enterica serovar Gallinarum
str. 287/91]
gi|326629312|gb|EGE35655.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9]
Length = 500
Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats.
Identities = 200/516 (38%), Positives = 317/516 (61%), Gaps = 24/516 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPG 179
ER +F+D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPG
Sbjct: 122 ERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPG 181
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
DR++ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+
Sbjct: 182 DRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 241
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA + +
Sbjct: 242 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADIASI 301
Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + +
Sbjct: 302 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAI 361
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+ F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L
Sbjct: 362 EIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALAT 421
Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479
+ + + + +++L ++ G+D + L G+ T+EDLA +DDL
Sbjct: 422 LAQDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIE----- 476
Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ +I+ AR + W E
Sbjct: 477 ------------GLTDEKAGELIMAAR-NICWFGDE 499
>gi|317046740|ref|YP_004114388.1| transcription termination factor NusA [Pantoea sp. At-9b]
gi|316948357|gb|ADU67832.1| transcription termination factor NusA [Pantoea sp. At-9b]
Length = 495
Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats.
Identities = 200/511 (39%), Positives = 316/511 (61%), Gaps = 19/511 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ +GD FR
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVSIDRRSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+V+EV T +I+L+ AR D + ++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLIVDEVTQPTREITLEAARFEDEAFNLGDFVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184
ER +F+++ G+II+G VK+V N+ +DLG N++ VI R++ + REN RPGDR++
Sbjct: 122 ERAMVVDQFREQEGDIITGVVKKVNRDNITLDLGSNAEAVIVREDMLPRENFRPGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F +
Sbjct: 302 NHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDMFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A +LV EGF+ +EELA V I+E+ I+G DE+T ++ RA+ L + +
Sbjct: 362 HLDIDEEFATILVEEGFSSLEELAYVPINELLEIDGLDEDTVEALRERAKNALTTLALAK 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ +E+L ++ G+D + L G+ T+EDLA VDDL
Sbjct: 422 EESRGNQEPAEDLLNLEGLDRALAYRLAAIGVCTLEDLAEQGVDDLTDIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ ++I+ AR + W +
Sbjct: 472 -------GLDDEKAGALIMAAR-NICWFGDD 494
>gi|148556720|ref|YP_001264302.1| transcription elongation factor NusA [Sphingomonas wittichii RW1]
gi|148501910|gb|ABQ70164.1| NusA antitermination factor [Sphingomonas wittichii RW1]
Length = 529
Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats.
Identities = 288/526 (54%), Positives = 384/526 (73%), Gaps = 14/526 (2%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
+SANR ELL IADAVA EK IDR++V+ M D+IQ+AAR+ YG +DIR +I+ +TGD+
Sbjct: 5 ISANRAELLAIADAVAREKLIDREIVIEAMEDAIQRAARARYGAENDIRAKIDGKTGDMR 64
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L+R++EVVE+V++Y Q+S+ A+ IG + DPLPP++FGR+A Q+AKQVI QK
Sbjct: 65 LWRVVEVVEQVDDYFKQVSVADAQKLQKDAAIGDFIVDPLPPIEFGRIAAQAAKQVIFQK 124
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VR+AER+RQY EFKD+ EII+G VKRVE+G+V+VDLG ++GVIRRD+ I RE +R GDR
Sbjct: 125 VRDAERERQYEEFKDRANEIITGVVKRVEFGHVVVDLGRAEGVIRRDQQIPREVVRVGDR 184
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V+S I VRRE RGPQ+ LSR HP+FM KLF EVPEIY+GI+++KA +RDPGSRAK+ V
Sbjct: 185 VRSLILSVRRENRGPQIFLSRAHPEFMKKLFAQEVPEIYDGIIEIKAAARDPGSRAKIGV 244
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S D SIDPVGACVGM+GSRVQAVV E++ EKIDI+ WSPD+ATFV+NAL+PA V++VV+
Sbjct: 245 ISHDGSIDPVGACVGMKGSRVQAVVQEMQGEKIDIIPWSPDTATFVVNALQPAQVSRVVI 304
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DE+ RIEV+VP +QLSLAIGRRGQNVRLASQLTG IDI+TE + S RQK+F + ++
Sbjct: 305 DEEEERIEVVVPDDQLSLAIGRRGQNVRLASQLTGKAIDILTEADASEKRQKEFLQNSEM 364
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F ++VDE +A LLVAEGF +EE+A V++ E+ASIEGFDEE E+Q RA+E LE +
Sbjct: 365 FQNELDVDETLAQLLVAEGFGALEEVAYVELDELASIEGFDEELGAELQSRAQEALERRE 424
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+++ R LGV + L +P + + V LG+ GIKT++DLA + D+L+ +
Sbjct: 425 AAAREERRSLGVEDALAELPYLTEAMLVTLGKAGIKTLDDLADLATDELIQKKRPEQRRR 484
Query: 482 EKFD------------GFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
+ D G L+ G ++Q +I+ AR W E
Sbjct: 485 QNSDRPERGDREENKGGVLAEYGLSEEQGNEIIMAARAH--WFTDE 528
>gi|292486836|ref|YP_003529706.1| transcription elongation protein nusA [Erwinia amylovora CFBP1430]
gi|292900766|ref|YP_003540135.1| transcription elongation protein [Erwinia amylovora ATCC 49946]
gi|291200614|emb|CBJ47746.1| transcription elongation protein [Erwinia amylovora ATCC 49946]
gi|291552253|emb|CBA19290.1| Transcription elongation protein nusA [Erwinia amylovora CFBP1430]
gi|312170904|emb|CBX79163.1| Transcription elongation protein nusA [Erwinia amylovora ATCC
BAA-2158]
Length = 501
Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats.
Identities = 203/517 (39%), Positives = 318/517 (61%), Gaps = 25/517 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALESALATATKKKYEQEIDVRVSIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+V+EV T +I+L+ A D S+ +GG V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLIVDEVTQPTREITLEAALYEDESLSLGGFVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-------NSDGVIRRDETISRENLRP 178
ER +F+++ GEII+G VK+V N+ +++ N++ VI R++ + REN RP
Sbjct: 122 ERAMVVDQFREQEGEIITGVVKKVNRDNISLEVRPNDGSNTNAEAVIIREDMLPRENFRP 181
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
GDR++ +Y VR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK
Sbjct: 182 GDRIRGVLYAVRPEARGAQLFVSRSKPEMLIELFRIEVPEIAEEVLEIKAAARDPGSRAK 241
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V
Sbjct: 242 IAVKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVAS 301
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
+V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + +
Sbjct: 302 IVVDEDNHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWDLNVMTVDDLQAKHQAEAHAA 361
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
F + +++DE A LLV EGF+ +EELA V I+E+ I+G DEET ++ RA+ L
Sbjct: 362 IDVFTKHLDIDEDFATLLVEEGFSSLEELAYVPINELLEIDGLDEETVEALRDRAKNALT 421
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ + ++ + + +E+L S+ G++ ++ L G+ T+EDLA VDDL
Sbjct: 422 TLALAKEESLGDTQPAEDLLSLEGLERELAFKLAAKGVCTLEDLAEQGVDDLSDID---- 477
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ +I+ AR + W +
Sbjct: 478 -------------GLSNERAGELIMAAR-NICWFGDD 500
>gi|304396347|ref|ZP_07378228.1| transcription termination factor NusA [Pantoea sp. aB]
gi|304355856|gb|EFM20222.1| transcription termination factor NusA [Pantoea sp. aB]
Length = 495
Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats.
Identities = 203/511 (39%), Positives = 317/511 (62%), Gaps = 19/511 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y ++RV I+ +GD FR
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIEVRVSIDRRSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
E+VEEV T +I+L AR D + ++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WEIVEEVTQPTREITLDAARFEDEAFNLGEYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184
ER +F+++ GEII+G VK+V N+ +DLG N++ VI R++ + REN RPGDR++
Sbjct: 122 ERAMVVDQFREQEGEIITGVVKKVNRDNISLDLGSNAEAVILREDMLPRENFRPGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F +
Sbjct: 302 NHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDMFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A +LV EGF+ +EELA V I+E+ ++G DEET ++ RA+ L + +
Sbjct: 362 HLDIDEEFATVLVEEGFSSLEELAYVPINELLEVDGLDEETIEALRERAKNALTTLALAK 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + +E+L ++ G+D + L G+ T+EDLA VDDL
Sbjct: 422 EESLGNQEPAEDLLNLEGLDRALAFRLASKGVCTLEDLAEQGVDDLTDIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G +Q ++I+ AR + W +
Sbjct: 472 -------GLSDEQAGALIMAAR-NICWFGDD 494
>gi|308189112|ref|YP_003933243.1| Transcription elongation protein nusA [Pantoea vagans C9-1]
gi|308059622|gb|ADO11794.1| Transcription elongation protein nusA [Pantoea vagans C9-1]
Length = 495
Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats.
Identities = 203/511 (39%), Positives = 317/511 (62%), Gaps = 19/511 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y ++RV I+ +GD FR
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIEVRVSIDRRSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
E+VEEV T +I+L AR D + ++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WEIVEEVTQPTREITLDAARFEDEAFNLGEYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184
ER +F+++ GEII+G VK+V N+ +DLG N++ VI R++ + REN RPGDR++
Sbjct: 122 ERAMVVDQFREQEGEIITGVVKKVNRDNISLDLGSNAEAVILREDMLPRENFRPGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F +
Sbjct: 302 NHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDMFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A +LV EGF+ +EELA V I+E+ ++G DEET ++ RA+ L + +
Sbjct: 362 HLDIDEEFATVLVEEGFSSLEELAYVPINELLEVDGLDEETIEALRERAKNALTTLALAK 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + +E+L ++ G+D + L G+ T+EDLA VDDL
Sbjct: 422 EESLGNQEPAEDLLNLEGLDRALAFRLASKGVCTLEDLAEQGVDDLTDIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G +Q ++I+ AR + W +
Sbjct: 472 -------GMSDEQAGALIMAAR-NICWFGDD 494
>gi|289207909|ref|YP_003459975.1| NusA antitermination factor [Thioalkalivibrio sp. K90mix]
gi|288943540|gb|ADC71239.1| NusA antitermination factor [Thioalkalivibrio sp. K90mix]
Length = 495
Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats.
Identities = 210/513 (40%), Positives = 324/513 (63%), Gaps = 27/513 (5%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L +ADAVA EK +D+D++ + ++ A R +G D+RV I+ E GD FR
Sbjct: 2 NKEILLVADAVANEKGVDKDIIFDALESALAMATRKYHGGKMDVRVSIDREEGDYEAFRR 61
Query: 66 LEVVEEV----ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
VV++ E+ QI L A+ ++P +G V+ +P+ +DFGR+A Q+AKQVI+QK
Sbjct: 62 WTVVDDEDPEFESPEYQILLSYAQQKNPDAQVGDVIEEPVEAVDFGRIAAQTAKQVIVQK 121
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180
VREAER + E++D+VG ++ G VKR + VDLGN+ + +I R+ I RE +R D
Sbjct: 122 VREAERAKVVEEYQDRVGTLVMGIVKRTDRNGTYVDLGNNAEALIPREHMIPRETVRTND 181
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
R++ Y+ ++R + RGPQ++LSR+ P+F+++LF +EVPE+ I+ + +RDPG RAK+A
Sbjct: 182 RLRGYLKEIRPDARGPQLILSRSAPEFLIELFKLEVPEVGQEIIDIMGAARDPGQRAKIA 241
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S+D +DPVGACVGMRGSRVQ+V EL E+IDI+VW + A FVINA+ PA V +V
Sbjct: 242 VRSNDPRLDPVGACVGMRGSRVQSVSNELAGERIDIIVWDENPAQFVINAMSPAEVLSIV 301
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DED +++ V +++LSLAIGR GQN+RLASQLTGW ++++TEE+ + + + +
Sbjct: 302 VDEDKQSMDIAVEEDKLSLAIGRGGQNIRLASQLTGWELNVMTEEQAAEKSEAEAQQLVT 361
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
FFM+A++VDE +A +LV EGF+ ++E+A V +E+ +IE FDE+ E++ RA + L
Sbjct: 362 FFMEALDVDEEVAGILVQEGFSTLDEVAYVDEAELLAIEEFDEDIVAELRNRASDALLTR 421
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
I + +E+L S+ G+ + L +G+ TMEDLA + DD++ +
Sbjct: 422 AIAGGEN---YQPAEDLLSMDGMTQGVANKLASHGVCTMEDLAEQAADDVVEMT------ 472
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
G ++ +I+ AR W E
Sbjct: 473 -----------GLSTEEASELIMTARAP--WFE 492
>gi|85710531|ref|ZP_01041595.1| transcription elongation factor NusA [Erythrobacter sp. NAP1]
gi|85687709|gb|EAQ27714.1| transcription elongation factor NusA [Erythrobacter sp. NAP1]
Length = 547
Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats.
Identities = 282/527 (53%), Positives = 378/527 (71%), Gaps = 16/527 (3%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
+SAN+ ELL IA++VA EK ID+ +V+ M ++IQK+AR+ YG +DIR +++P TGD++
Sbjct: 5 ISANKAELLAIANSVASEKMIDKTIVIEAMEEAIQKSARNRYGAENDIRAKLDPNTGDLT 64
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L+R++EVVEEVE+Y Q+ LK A+ +G + DPLPP+D GR+ QSAKQVI QK
Sbjct: 65 LWRVVEVVEEVEDYFKQVDLKQAQKLQDGASVGDFIVDPLPPVDLGRIDAQSAKQVIFQK 124
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VR+AER+RQ+ EFKD+ GEII+G +K VE+G+VIV+LG ++GVIRRD+ I RE R G+R
Sbjct: 125 VRDAERERQFEEFKDRAGEIITGVIKSVEFGHVIVNLGRAEGVIRRDQQIPREAARVGER 184
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++ I V R RGPQ+ LSR P FM KLF EVPEIY+GI+++KA +RDPGSRAK+ V
Sbjct: 185 VRALITKVERNNRGPQIFLSRAAPDFMRKLFAQEVPEIYDGIIEIKAAARDPGSRAKIGV 244
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S DSSIDPVGACVGM+GSRVQAVV EL+ EKIDI+ WS D+ATFV+NAL+PA V +VVL
Sbjct: 245 ISHDSSIDPVGACVGMKGSRVQAVVQELQGEKIDIIPWSEDTATFVVNALQPATVARVVL 304
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DE+ GRIEV+VP +QLSLAIGRRGQNVRLASQLTG IDI+TEEE S R K+F ER++
Sbjct: 305 DEEDGRIEVVVPDDQLSLAIGRRGQNVRLASQLTGHQIDIMTEEEASEKRSKEFAERSKM 364
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F + ++VDE ++ LLVAEGFA +EE+A V+++E+A+IEGFDEE A E+Q RA E LE +
Sbjct: 365 FEEELDVDETLSQLLVAEGFAMLEEVAYVEMAELAAIEGFDEELAEELQSRAIEALERQE 424
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ RELGV + + +P ++ + V LG+ G+KT++D+A + D+L+
Sbjct: 425 EAHRTARRELGVEDAIAELPHLNEAMLVTLGKAGLKTLDDVADLATDELIAKKREAPRRR 484
Query: 482 EKFD--------------GFLSSLGTPKDQVESMIIHARYKMGWIEK 514
D G L G ++Q +I+ AR W E
Sbjct: 485 NNTDGPPMRRPQREQDKGGVLGEYGLTEEQGNEIIMAARAH--WFED 529
>gi|91228266|ref|ZP_01262202.1| transcription elongation factor NusA [Vibrio alginolyticus 12G01]
gi|254229307|ref|ZP_04922724.1| transcription termination factor NusA domain protein [Vibrio sp.
Ex25]
gi|262393381|ref|YP_003285235.1| transcription termination protein NusA [Vibrio sp. Ex25]
gi|269966859|ref|ZP_06180932.1| N utilization substance protein A [Vibrio alginolyticus 40B]
gi|91188143|gb|EAS74445.1| transcription elongation factor NusA [Vibrio alginolyticus 12G01]
gi|151938115|gb|EDN56956.1| transcription termination factor NusA domain protein [Vibrio sp.
Ex25]
gi|262336975|gb|ACY50770.1| transcription termination protein NusA [Vibrio sp. Ex25]
gi|269828526|gb|EEZ82787.1| N utilization substance protein A [Vibrio alginolyticus 40B]
Length = 495
Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats.
Identities = 204/509 (40%), Positives = 323/509 (63%), Gaps = 19/509 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L +A+AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG+ +R
Sbjct: 4 EILAVAEAVSNEKAVPRERIFEALEIALATSTKKKYEIEIDVRVAIDRKTGEFVTYRRWL 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV++VEN T +ISL+ A+ D SI++G V D + + F R+ Q+AKQVI+QKVREAER
Sbjct: 64 VVDDVENPTKEISLEAAQYEDDSIELGDYVEDEIESVTFDRITTQTAKQVIVQKVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186
+ +F D G++I+G VK+V +++DLGN+ + VI RD+ + REN RPGDRV+ +
Sbjct: 124 AQIVEQFIDNEGDLITGVVKKVNRDTIVLDLGNNAEAVILRDDQLPRENFRPGDRVRGLL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
Y V E RG Q+ ++R+ P+ + +LF +EVPEI I+++K +RDPGSRAK+AV ++D
Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIAEDIIELKGAARDPGSRAKIAVKTNDK 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED
Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDAH 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V + L+ AIGR GQNVRLASQLTGW ++++T + ++ + FM+ +
Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHAEESQASIENFMKYL 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426
+++E A LLV EGF+ +EE+A V ++E+ I+G +EE E++GRA++ L I + ++
Sbjct: 364 DIEEDFAQLLVEEGFSTLEEIAYVPVNELLEIDGLNEELIEELRGRAKDALTTIALAQEE 423
Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486
L +E+L ++ G++ ++ L G+ T+EDLA +DDL G
Sbjct: 424 SFEGLEPAEDLLALEGLEREMAFKLAAKGVATLEDLADQGIDDLEGIE------------ 471
Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G +++ +I+ AR + W +E
Sbjct: 472 -----GLTEERAGELIMAAR-NICWFGEE 494
>gi|145298043|ref|YP_001140884.1| transcription elongation factor NusA [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142850815|gb|ABO89136.1| transcription elongation factor nusA [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 500
Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats.
Identities = 200/517 (38%), Positives = 315/517 (60%), Gaps = 22/517 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + DAV+ EK++ R+ + + ++ A + Y ++RVEI+ +TGD +R
Sbjct: 2 NKEILLVVDAVSNEKAVPREKIFQALETALATATKKKYEGEIEVRVEIDRKTGDYETYRR 61
Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
VV + +EN +I+L+ A+ P I +G V D + + F R+ Q+AKQVI+QKV
Sbjct: 62 WVVVADQAAMENPYGEITLEAAQIEQPEIQLGDYVEDQIDSVTFDRITTQTAKQVIVQKV 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181
REAER + +FKDK G IISG VK+ NVI+DLG N++ VI RD+ + RE RPGDR
Sbjct: 122 REAERSQVVDQFKDKEGTIISGVVKKSNRDNVILDLGSNAEAVIFRDDMLPRETFRPGDR 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++ +Y VR E RG Q+ +SR+ P F+ +LF +EVPEI ++++ +RDPGSRAK++V
Sbjct: 182 IRGLLYAVRPEARGSQLFVSRSSPDFLKELFRIEVPEIGEEMIEIMGAARDPGSRAKISV 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
++D IDP+GAC+GMRG+RVQAV EL E+ DIV++ + A +VINA+ PA V +++
Sbjct: 242 KTNDRRIDPIGACIGMRGARVQAVSAELSGERADIVLYDDNPAQYVINAMAPADVASIIV 301
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED +++ V L+ AIGR GQNVRLASQLTGW ++++T E+ Q + +
Sbjct: 302 DEDNHTMDIAVEAANLAQAIGRNGQNVRLASQLTGWELNVMTVEDMRSKHQAENDRILTL 361
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F A+++D+ A LL+ EGF+ +EE+A V ++E+ +I+G DE+ E++ RA++ L
Sbjct: 362 FTSALDIDDDFAGLLMEEGFSTLEEIAFVPVNELLAIDGLDEDMVEELRKRAKDVLTTKA 421
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ ++ + + SE+L ++ G+ + AL G+ T+EDLA +DDL E
Sbjct: 422 LAKEESLDGVEPSEDLLNLAGLGRDMAYALAARGVGTLEDLAEQGIDDLADIEE------ 475
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518
++ +I+ AR + W +E+
Sbjct: 476 -----------LTAEKAGELIMAAR-NICWFGEEQSE 500
>gi|16762052|ref|NP_457669.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29143541|ref|NP_806883.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|213621934|ref|ZP_03374717.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
gi|213645859|ref|ZP_03375912.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|25299784|pir||AI0901 L factor [imported] - Salmonella enterica subsp. enterica serovar
Typhi (strain CT18)
gi|16504355|emb|CAD07807.1| L factor [Salmonella enterica subsp. enterica serovar Typhi]
gi|29139175|gb|AAO70743.1| L factor [Salmonella enterica subsp. enterica serovar Typhi str.
Ty2]
Length = 500
Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats.
Identities = 200/516 (38%), Positives = 316/516 (61%), Gaps = 24/516 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPG 179
ER +F+D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPG
Sbjct: 122 ERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPG 181
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
DR++ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+
Sbjct: 182 DRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 241
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +
Sbjct: 242 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 301
Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
V+DED +++ V L+ AIGR GQNV LASQL+GW ++++T ++ Q + +
Sbjct: 302 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVHLASQLSGWELNVMTVDDLQAKHQAEAHAAI 361
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+ F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L
Sbjct: 362 EIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALAT 421
Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479
+ + + + +++L ++ G+D + L G+ T+EDLA +DDL
Sbjct: 422 LAQDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIE----- 476
Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ +I+ AR + W E
Sbjct: 477 ------------GLTDEKAGELIMAAR-NICWFGDE 499
>gi|259907041|ref|YP_002647397.1| transcription elongation factor NusA [Erwinia pyrifoliae Ep1/96]
gi|224962663|emb|CAX54118.1| Transcription elongation protein NusA (N utilization substance
protein A) [Erwinia pyrifoliae Ep1/96]
gi|283476837|emb|CAY72675.1| Transcription elongation protein nusA [Erwinia pyrifoliae DSM
12163]
gi|310766253|gb|ADP11203.1| transcription elongation factor NusA [Erwinia sp. Ejp617]
Length = 501
Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats.
Identities = 203/517 (39%), Positives = 317/517 (61%), Gaps = 25/517 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALESALATATKKKYEQEIDVRVSIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+V+EV T +I+L+ A D S+ +GG V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLIVDEVTQPTREITLEAAIYEDESLSLGGFVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-------NSDGVIRRDETISRENLRP 178
ER +F+++ GEII+G VK+V N+ +++ N++ VI R++ + REN RP
Sbjct: 122 ERAMVVDQFREQEGEIITGVVKKVNRDNISLEVRPNDGSNTNAEAVIIREDMLPRENFRP 181
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
GDR++ +Y VR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK
Sbjct: 182 GDRIRGVLYAVRPEARGAQLFVSRSKPEMLIELFRIEVPEIAEEVLEIKAAARDPGSRAK 241
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V
Sbjct: 242 IAVKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVAS 301
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
+V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + +
Sbjct: 302 IVVDEDNHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWDLNVMTVDDLQAKHQAEAHAA 361
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
F + +++DE A LLV EGF+ +EELA V I E+ I+G DEET ++ RA+ L
Sbjct: 362 IDVFTKHLDIDEDFATLLVEEGFSSLEELAYVPIKELLEIDGLDEETVEALRDRAKNALT 421
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ + ++ + + +E+L S+ G++ ++ L G+ T+EDLA VDDL
Sbjct: 422 TLALAKEESLGDTQPAEDLLSLEGLERELAFKLAAKGVCTLEDLAEQGVDDLSDID---- 477
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ +I+ AR + W +
Sbjct: 478 -------------GLSDERAGELIMAAR-NICWFGDD 500
>gi|188532503|ref|YP_001906300.1| transcription elongation factor NusA [Erwinia tasmaniensis Et1/99]
gi|188027545|emb|CAO95392.1| Transcription elongation protein NusA (N utilization substance
protein A) [Erwinia tasmaniensis Et1/99]
Length = 501
Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats.
Identities = 203/517 (39%), Positives = 317/517 (61%), Gaps = 25/517 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALESALATATKKKYEQEIDVRVSIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+V+EV T +I+L+ A D S +GG V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLIVDEVTQPTREITLEAALYEDESFSLGGFVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-------NSDGVIRRDETISRENLRP 178
ER +F+++ GEII+G VK+V N+ +++ N++ VI R++ + REN RP
Sbjct: 122 ERAMVVDQFREQEGEIITGVVKKVSRDNISLEVRPNDGSSTNAEAVIIREDMLPRENFRP 181
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
GDR++ +Y VR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK
Sbjct: 182 GDRIRGVLYAVRPEARGAQLFVSRSKPEMLIELFRIEVPEIAEEVLEIKAAARDPGSRAK 241
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V
Sbjct: 242 IAVKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVAS 301
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
+V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + +
Sbjct: 302 IVVDEDNHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAA 361
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
F + +++DE A LLV EGF+ +EELA V I+E+ I+G DEET ++ RA+ L
Sbjct: 362 IDVFTKHLDIDEDFATLLVEEGFSSLEELAYVPINELLEIDGLDEETVEALRDRAKNALT 421
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ + ++ + + +E+L S+ G++ ++ L G+ T+EDLA VDDL
Sbjct: 422 TLALAKEESLGDTQPAEDLLSLEGLERELAFKLAAKGVCTLEDLAEQGVDDLSDIE---- 477
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ +I+ AR + W +
Sbjct: 478 -------------GLSDERAGELIMAAR-NICWFGDD 500
>gi|163802303|ref|ZP_02196197.1| transcription elongation factor NusA [Vibrio sp. AND4]
gi|159173832|gb|EDP58646.1| transcription elongation factor NusA [Vibrio sp. AND4]
Length = 495
Score = 477 bits (1229), Expect = e-132, Method: Composition-based stats.
Identities = 203/509 (39%), Positives = 318/509 (62%), Gaps = 19/509 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L +A+AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG+ FR
Sbjct: 4 EILAVAEAVSNEKAVPRERIFEALEIALATSTKKKYEIEIDVRVAIDRKTGEFETFRRWL 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVE VEN T +IS++ A+ D +G V D +P + F R+ Q+AKQVI+QKVREAER
Sbjct: 64 VVENVENPTKEISIEAAQYEDADAQLGDFVEDDIPSVTFDRITTQTAKQVIVQKVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186
+ +F D G++I+G VK+V V++DLGN+ + VI RD+ + RENLRPGDRV+ +
Sbjct: 124 AQIVEQFIDNEGDLITGVVKKVNRETVVLDLGNNAEAVILRDDQLPRENLRPGDRVRGLL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
Y V E RG Q+ ++R+ P+ + +LF +EVPEI I+++K +RDPGSRAK+AV ++D
Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIAEEIIELKGAARDPGSRAKIAVKTNDK 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
DPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED
Sbjct: 244 RTDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDAH 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V + L+ AIGR GQNVRLASQLTGW ++++T + ++ + FM+ +
Sbjct: 304 SMDIAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVADLQKKHAEESQASIENFMKYL 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426
+++E A LLV EGF+ +EE+A V ++E+ ++G +EE E++ RA++ L I + ++
Sbjct: 364 DIEEDFAQLLVEEGFSTLEEIAYVPVNELLDVDGLNEELIEELRTRAKDALTTIALAQEE 423
Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486
L +E+L + G++ ++ L G+ T+EDLA +DDL G
Sbjct: 424 SFDGLEPAEDLLGLEGLEREMAFKLAAKGVVTLEDLADQGIDDLEGTE------------ 471
Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G +++ +I+ AR + W +E
Sbjct: 472 -----GLTEERAGELIMAAR-NICWFGEE 494
>gi|294142061|ref|YP_003558039.1| N utilization substance protein A [Shewanella violacea DSS12]
gi|293328530|dbj|BAJ03261.1| N utilization substance protein A [Shewanella violacea DSS12]
Length = 499
Score = 477 bits (1229), Expect = e-132, Method: Composition-based stats.
Identities = 194/516 (37%), Positives = 318/516 (61%), Gaps = 23/516 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L +A+AV+ EK + R+ + + ++ A + + ++RVEI+ +TG FR
Sbjct: 2 NKEILLVAEAVSNEKGVPREKIFEALEIALATATKKKHVGEIEVRVEIDRKTGAYETFRR 61
Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
+VVE+ +EN +I+L+ A+ + + +G V D + + F R+ Q+AKQVI+QK
Sbjct: 62 WQVVEDTGEPLENPYGEITLEAAQYENAELQVGDFVEDDMESVTFDRITTQTAKQVIVQK 121
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180
VREAER + +F+D+ GE+I+G VK+ +V+VDLG + D V+ +++ ISREN RPGD
Sbjct: 122 VREAERAQVVEQFQDREGELITGIVKKSNRESVVVDLGGNADAVLFKEDLISRENFRPGD 181
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
R+++ ++ VR E RG Q+ ++RT P +++LF +EVPEI + ++++ +RDPGSRAK+A
Sbjct: 182 RIRALLFSVRPEARGAQLFMTRTQPDMLIELFRVEVPEIADEMIEIMGAARDPGSRAKIA 241
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A FVINA+ PA V +V
Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELNGERVDIVLWDDNPAQFVINAMAPADVASIV 301
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DED +++ V + L+ AIGR GQNVRLA+QL+GW ++++T E+ Q + +
Sbjct: 302 VDEDTHSMDIAVEADSLAQAIGRNGQNVRLATQLSGWVLNVMTVEDLQAKHQAESAKVVS 361
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
F+ +++VDE A +L EGF +EE+A V +E+ I+GFDE+T ++ RA+ +
Sbjct: 362 LFVSSLDVDEDFAQILADEGFTSLEEVAYVPSAELMEIDGFDEDTVEALRERAKAAISTR 421
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ ++ + SE+L ++ G++ + G+ T+EDLA +DDL+ E
Sbjct: 422 ALATEEALDGAEPSEDLLALEGLEKHLAFVFASKGVITLEDLAEQGIDDLIDIEE----- 476
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
+++ +I+ AR + W E+
Sbjct: 477 ------------LTEEKAGELIMAAR-NICWFGDEE 499
>gi|320540176|ref|ZP_08039831.1| putative transcription termination/antitermination L factor
[Serratia symbiotica str. Tucson]
gi|320029842|gb|EFW11866.1| putative transcription termination/antitermination L factor
[Serratia symbiotica str. Tucson]
Length = 502
Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats.
Identities = 200/517 (38%), Positives = 311/517 (60%), Gaps = 26/517 (5%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ +TGD FR
Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVSIDRKTGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV+EV T +I+L+ A+ +P ++GG + D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WVVVDEVTQPTREITLEAAQYEEPDTELGGYIEDQIDSVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184
ER F++ GEI++G VK+V ++ +DLG N++ VI R++ + REN RPGDR++
Sbjct: 122 ERAMVVDAFREHEGEIVTGVVKKVNRDSIALDLGSNAEAVIGREDMLPRENFRPGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y VR E RG Q+ +SR+ P+ + +LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYAVRPEARGAQLFVSRSSPEMLKELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDI++W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG-------WTIDIITEEEDSINRQKDFNE 357
+++ V L+ AIGR GQNVRLASQL W ++++T ++ + Q + +
Sbjct: 302 NCTMDIAVEASNLAQAIGRNGQNVRLASQLLKQHRDDDRWELNVMTADDLQVKHQAEAHA 361
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
F + +++DE A +LV EGF+ +EELA V I E+ I+G DE+T ++ RAR
Sbjct: 362 AIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPIKELLEIDGLDEDTVEALRDRARAAS 421
Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477
+ + ++ + +E+L ++PG++ + L G+ T+EDLA VDDL
Sbjct: 422 TTLALAQKESLGGQEPAEDLLNLPGLERSMAFKLAARGVGTLEDLAEQGVDDLADIE--- 478
Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
G Q +I+ +R + W
Sbjct: 479 --------------GLSNQQAGELIMASR-NICWFGD 500
>gi|28899231|ref|NP_798836.1| transcription elongation factor NusA [Vibrio parahaemolyticus RIMD
2210633]
gi|153838305|ref|ZP_01990972.1| transcription elongation factor NusA [Vibrio parahaemolyticus
AQ3810]
gi|260362206|ref|ZP_05775190.1| transcription termination factor NusA [Vibrio parahaemolyticus
K5030]
gi|260879074|ref|ZP_05891429.1| transcription termination factor NusA [Vibrio parahaemolyticus
AN-5034]
gi|260897745|ref|ZP_05906241.1| transcription termination factor NusA [Vibrio parahaemolyticus
Peru-466]
gi|260900801|ref|ZP_05909196.1| transcription termination factor NusA [Vibrio parahaemolyticus
AQ4037]
gi|28807455|dbj|BAC60720.1| N utilization substance protein A [Vibrio parahaemolyticus RIMD
2210633]
gi|149748294|gb|EDM59153.1| transcription elongation factor NusA [Vibrio parahaemolyticus
AQ3810]
gi|308088968|gb|EFO38663.1| transcription termination factor NusA [Vibrio parahaemolyticus
Peru-466]
gi|308089567|gb|EFO39262.1| transcription termination factor NusA [Vibrio parahaemolyticus
AN-5034]
gi|308108198|gb|EFO45738.1| transcription termination factor NusA [Vibrio parahaemolyticus
AQ4037]
gi|308111470|gb|EFO49010.1| transcription termination factor NusA [Vibrio parahaemolyticus
K5030]
gi|328474233|gb|EGF45038.1| transcription elongation factor NusA [Vibrio parahaemolyticus
10329]
Length = 495
Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats.
Identities = 201/509 (39%), Positives = 322/509 (63%), Gaps = 19/509 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L +A+AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG+ +R
Sbjct: 4 EILAVAEAVSNEKAVPRERIFEALEIALATSTKKKYEIEIDVRVAIDRKTGEFVTYRRWL 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV++VE+ T +ISL+ A+ D S+++G V D + + F R+ Q+AKQVI+QKVREAER
Sbjct: 64 VVDQVESPTKEISLEAAQYEDDSVELGDYVEDEIESVTFDRITTQTAKQVIVQKVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186
+ +F D G++I+G VK+V +++DLGN+ + VI RD+ + REN RPGDRV+ +
Sbjct: 124 AQIVEQFIDNEGDLITGVVKKVNRDTIVLDLGNNAEAVILRDDQLPRENFRPGDRVRGLL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
Y V E RG Q+ ++R+ P+ + +LF +EVPEI I+++K +RDPGSRAK+AV ++D
Sbjct: 184 YKVAPEARGFQLFITRSKPEMLEELFRVEVPEIAEEIIELKGAARDPGSRAKIAVKTNDK 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED
Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDAH 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V + L+ AIGR GQNVRLASQLTGW ++++T + ++ + FM+ +
Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHAEESQASIENFMKYL 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426
+++E A LLV EGF+ +EE+A V ++E+ I+G +EE E++GRA++ L I + ++
Sbjct: 364 DIEEDFAQLLVEEGFSTLEEIAYVPVNELLEIDGLNEELVEELRGRAKDALTTIALAQEE 423
Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486
L +++L + G++ ++ L G+ T+EDLA +DDL G
Sbjct: 424 SFEGLEPADDLLGLEGLEREMAFKLAAKGVATLEDLADQGIDDLEGIE------------ 471
Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G +++ +I+ AR + W +E
Sbjct: 472 -----GLTEERAGELIMAAR-NICWFGEE 494
>gi|330447378|ref|ZP_08311027.1| transcription termination/antitermination L factor [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
gi|328491569|dbj|GAA05524.1| transcription termination/antitermination L factor [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
Length = 495
Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats.
Identities = 199/511 (38%), Positives = 312/511 (61%), Gaps = 19/511 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + + D+RV I+ +TG+ FR
Sbjct: 2 NKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKHEAEIDVRVTIDRKTGEFETFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+ VEEV T +I+L+ A+ +P + G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WKAVEEVTQPTLEITLEAAQFENPELVEGDYVEDEIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER + +F D GE+I+G VK+V VI+DLGN+ + VI+RD+ + REN RPGDRV+
Sbjct: 122 ERAQIVEQFIDNEGELITGIVKKVNRDAVIIDLGNNAEAVIQRDDQLPRENFRPGDRVRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y V E RG Q+ ++R+ P+ + +LF +EVPE+ ++++ +RDPGSRAK+AV ++
Sbjct: 182 LLYKVAPEARGFQLFMTRSKPEMLSELFRIEVPEMGEELIELMGAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A +VINA+ PA V +++DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDENPAQYVINAMAPAEVDSIIVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V K+ L+ AIGR GQNVRLASQLTGW ++++T E+ Q++ E + F +
Sbjct: 302 NHTMDIAVQKDNLAQAIGRSGQNVRLASQLTGWELNVMTVEDLQKKHQEEAKESIEVFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A +LV EGF +EE+A V +SE+ +EG DE+ +++ RA+ L + +
Sbjct: 362 HLDIDEEFATVLVEEGFTTLEEIAYVPVSELMEVEGLDEDLIEQLRSRAKAALTTLALAK 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + +E+L + G++ ++ L GI T+EDLA DDL
Sbjct: 422 EESLDGAEPAEDLLGLEGLERELAFKLAAKGICTLEDLADQGTDDLTDIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G + +I+ AR + W E
Sbjct: 472 -------GVDDAKAGELIMAAR-NICWFSDE 494
>gi|71908071|ref|YP_285658.1| transcription elongation factor NusA [Dechloromonas aromatica RCB]
gi|71847692|gb|AAZ47188.1| NusA antitermination factor [Dechloromonas aromatica RCB]
Length = 490
Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats.
Identities = 210/508 (41%), Positives = 330/508 (64%), Gaps = 23/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++ +++V + ++ A + +D+R+ I+ +TG FR +
Sbjct: 4 EILLLVDALAREKNVSKEIVFGALELALASATKKRINDEADVRISIDRDTGSFESFRRWQ 63
Query: 68 VVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV + E N +I L A+ DP I+ G + +PL P+DFGR+ Q+AKQVI+QK+R+A
Sbjct: 64 VVPDNEYVNEFLEIPLSDAQKDDPEIEPGDSLEEPLEPIDFGRIGAQAAKQVILQKIRDA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER++ +F + ++SGT+KR+E GN I++ G + ++ RD+ I +ENLR GDRV++Y
Sbjct: 124 EREQILADFLGRGEHVVSGTIKRMERGNAIIEAGKIEAMLPRDQMIPKENLRVGDRVRAY 183
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ + R RGPQ++LSRT P+F++KLF MEVPEI +G++++KA +RDPG RAK+AV S+D
Sbjct: 184 LLRIDRNARGPQIILSRTAPEFVIKLFDMEVPEISDGLMELKACARDPGLRAKIAVKSND 243
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DP+G CVG+RGSRV AV E+ E IDIV+WS D A FVI AL PA V+ +V+DE+
Sbjct: 244 PRVDPIGTCVGLRGSRVTAVRNEIGGENIDIVLWSADPAQFVIGALSPAEVSSIVVDEEK 303
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
++V+V ++ L++AIGR GQNVRLAS+LTGWTI+++T++E + + +F E FM+
Sbjct: 304 HAMDVVVDEDNLAIAIGRNGQNVRLASELTGWTINLMTQDESAKKSEAEFAETRVVFMEK 363
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425
+++DE +A LL+ EGF+ +EE+A V ++E+ IEG DEE E++ RAR L I +
Sbjct: 364 LDIDEELADLLIEEGFSTLEEVAYVPLAEMLEIEGLDEEIVNELRNRARNVLLTEAIATE 423
Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485
+K+ VSE+L + G+ ++ L + +KT +DLA +VD+L +
Sbjct: 424 EKLE--SVSEDLIGLEGMSKELAAKLAGHDVKTRDDLAELAVDELTEMT----------- 470
Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIE 513
G ++ + +I+ AR W E
Sbjct: 471 ------GIDDERAKDLILKARAH--WFE 490
>gi|260771174|ref|ZP_05880101.1| transcription termination protein NusA [Vibrio furnissii CIP
102972]
gi|260613771|gb|EEX38963.1| transcription termination protein NusA [Vibrio furnissii CIP
102972]
gi|315179220|gb|ADT86134.1| transcription elongation factor NusA [Vibrio furnissii NCTC 11218]
Length = 495
Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats.
Identities = 200/509 (39%), Positives = 320/509 (62%), Gaps = 19/509 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + +AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG+ + FR
Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALEIALATSTKKKYEIEIDVRVAIDRKTGEFNTFRRWL 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EVEN T +ISL+ A D S+ +G + D + + F R+ Q+AKQVI+QKVREAER
Sbjct: 64 VVDEVENPTKEISLEAAVYDDESVKLGDFIEDEIESVTFDRITTQTAKQVIVQKVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186
+ +F D G++I+G VK+V VI+DLG N++ VI R++ + REN RPGDRV+ +
Sbjct: 124 AQIVEQFIDNEGDLITGVVKKVNRDTVILDLGSNAEAVILREDQLPRENFRPGDRVRGLL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
Y V E RG Q+ ++R+ P+ + +LF +EVPEI ++++K +RDPGSRAK+AV ++D
Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKGAARDPGSRAKIAVKTNDK 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED
Sbjct: 244 RIDPVGACVGMRGARVQAVSGELCGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDAH 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ +
Sbjct: 304 AMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMKYL 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426
++++ A LLV EGF+ +EE+A V + E+ ++G DE+ E++ RA++ L I + ++
Sbjct: 364 DIEQDFAELLVEEGFSTLEEIAYVPVHELLEVDGLDEDLVEELRTRAKDALTTIALAQEE 423
Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486
L +E+L ++ G++ ++ L G+ T+EDLA +DDL G
Sbjct: 424 SYEGLEPAEDLLALEGLEREMAFKLAAKGVATLEDLADQGIDDLEGIE------------ 471
Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G +++ +I+ AR + W ++
Sbjct: 472 -----GLTEERAGELIMAAR-NICWFGED 494
>gi|254507512|ref|ZP_05119646.1| transcription elongation factor NusA [Vibrio parahaemolyticus 16]
gi|219549582|gb|EED26573.1| transcription elongation factor NusA [Vibrio parahaemolyticus 16]
Length = 495
Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats.
Identities = 201/509 (39%), Positives = 317/509 (62%), Gaps = 19/509 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + +AV+ EK++ R+ + + ++ + + + D+RVEI+ +TG+ FR
Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALEIALATSTKKKHEIEIDVRVEIDRKTGEFETFRRWL 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEVEN T +ISL+ A+ D I +G V D + + F R+ Q+AKQVI+QKVREAER
Sbjct: 64 VVEEVENPTKEISLEAAQYEDAEIQLGDFVEDDIESVTFDRITTQTAKQVIVQKVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186
+ +F D GE+++G VK+V V++DLGN+ + VI RD+ + REN RPGDRV+ +
Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRETVVLDLGNNAEAVILRDDQLPRENFRPGDRVRGLL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
Y V E RG Q+ ++R+ P+ + +LF +EVPEI I+++K +RDPGSRAK+AV ++D
Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIAEEIIELKGAARDPGSRAKIAVKTNDK 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED
Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDAH 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V + L+ AIGR GQNVRLASQLTGW ++++T + ++ FM+ +
Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHAEESQAAIDAFMKHL 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426
+++E A LLV EGF+ +EE+A V ++E+ ++G DE+ E++ RA+ L + + ++
Sbjct: 364 DIEEDFAQLLVEEGFSTLEEVAYVPVNELLEVDGLDEDLVEELRNRAKNALTTLALAQEE 423
Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486
+ +E+L + G++ ++ L G+ T+EDLA +DDL G
Sbjct: 424 SFEGVEPAEDLLGLEGLEREMAFKLAAKGVATLEDLADQGIDDLEGIE------------ 471
Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G +++ +I+ AR + W ++
Sbjct: 472 -----GLTEERAGELIMAAR-NICWFGED 494
>gi|88860547|ref|ZP_01135185.1| transcription elongation factor NusA [Pseudoalteromonas tunicata
D2]
gi|88817745|gb|EAR27562.1| transcription elongation factor NusA [Pseudoalteromonas tunicata
D2]
Length = 498
Score = 476 bits (1224), Expect = e-132, Method: Composition-based stats.
Identities = 190/513 (37%), Positives = 318/513 (61%), Gaps = 23/513 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L +A+AV+ EK++ ++ + + ++ A + + D+RV I+ +TG FR +
Sbjct: 4 EILLVAEAVSNEKAVPKEKIFEALEFALATATKKKHDGDIDVRVCIDRKTGAYDTFRRWQ 63
Query: 68 VVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+VE+ +EN +I+++ A DP+ +G + + + + F R+ Q+AKQVI+QKVR
Sbjct: 64 IVEDREGGLENPYREITIEAAVYDDPNAKLGDFIEEQIESIKFDRITTQTAKQVIVQKVR 123
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182
EAER ++D+ GE+++G VK+ +++DLGN+ + VI RD+ + REN RPGDR+
Sbjct: 124 EAERALIVEAYQDQEGEMVTGVVKKASREAIVLDLGNNAEAVIYRDDMLPRENFRPGDRI 183
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
+ +Y V+ E RG Q+ ++R+ P+ +++LF +EVPEI +++++ +RDPGSRAK+AV
Sbjct: 184 RGLLYSVKPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEMIEIRGAARDPGSRAKIAVK 243
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
S+D IDPVGACVGMRG+RVQAV TEL E+IDIV++ + A FVINA+ PA V +V+D
Sbjct: 244 SNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLYDDNPAQFVINAMAPAEVASIVMD 303
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
ED +++ V + L+ AIGR GQNVRLASQLTGW ++++T ++ + Q++ + + F
Sbjct: 304 EDSRSMDIAVESDNLAQAIGRNGQNVRLASQLTGWELNVMTVDDMNKKNQEESGKAIKVF 363
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
+ +++DE A LL+ EGF+ +EE+A V SE I+G DE+T E++ RA+ L +
Sbjct: 364 TEGLDIDEDFAQLLIDEGFSTLEEVAYVPTSEFLEIDGIDEDTVEELRARAKASLTTQAL 423
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482
++ + + +L ++ G++ + L G+ T+EDLA +D+L+ +E
Sbjct: 424 ASEESLEGATPAADLLALEGLERHLAFVLASKGVVTLEDLAEQGIDELVDITE------- 476
Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
++ +I+ AR + W E
Sbjct: 477 ----------LSSEKAGELIMAAR-NICWFGDE 498
>gi|311695959|gb|ADP98832.1| transcription elongation factor NusA [marine bacterium HP15]
Length = 497
Score = 476 bits (1224), Expect = e-132, Method: Composition-based stats.
Identities = 208/512 (40%), Positives = 325/512 (63%), Gaps = 23/512 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66
E+L + ++V+ EK +++DV+ + ++ AA+ + +DIRV I+ +TG+ FR
Sbjct: 4 EILLVVESVSNEKGVEKDVIFEAIELALATAAKKRFEDEEADIRVSIDRKTGEYETFRRW 63
Query: 67 EVVEEVENYT--CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV+ +++L+ A + DP++ G + + + FGR+ Q+AKQ+I QKVRE
Sbjct: 64 LVVDNDAVPALGTELTLQEAEEIDPALKPGDIHEEKIESEAFGRIGAQAAKQIIFQKVRE 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVK 183
AER + ++D+VGE++SGTVK+V NVIVDLG N++ ++ R+ I RE R GDRV+
Sbjct: 124 AERTKIVDSYRDRVGELVSGTVKKVTRDNVIVDLGANAEALLPREFLIPRETFRMGDRVR 183
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
S + ++R + RGPQ++LSRT PQ +++LF +EVPEI +++++ +RDPGSRAK+AV +
Sbjct: 184 SLLLEIRTDHRGPQLILSRTSPQMLIELFRIEVPEIAEDLIEIRGAARDPGSRAKIAVKT 243
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
+D IDPVGACVGMRGSRVQAV EL E++DIV+W + A VINA+ PA V +V+DE
Sbjct: 244 NDRRIDPVGACVGMRGSRVQAVSNELGGERVDIVLWDDNPAQLVINAMAPAEVASIVMDE 303
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
D +EV V ++ L+ AIGR GQNVRLA+ LTGWT++++TEEE ++++++ + F
Sbjct: 304 DRHTMEVAVAEDNLAQAIGRNGQNVRLATDLTGWTLNVMTEEEAGERQEQEYSRLVEHFT 363
Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423
++VDE A +L+ EGF +EE+A V + E+ +IEGFDEET E++ RA++ L +
Sbjct: 364 GNLDVDEEFAGVLIEEGFTSIEEVAYVPMEEMLAIEGFDEETVTELRRRAKDVLLNQALA 423
Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483
++ + +E+L + G+D + L G++TMEDLA SV DLL
Sbjct: 424 SEEALEGAEPAEDLLGMDGMDRSLAFKLAGMGVRTMEDLAEQSVGDLLEIE--------- 474
Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G +++ +I+ AR W E +
Sbjct: 475 --------GMDEERAGQLIMTARAP--WFEDQ 496
>gi|329295928|ref|ZP_08253264.1| transcription elongation factor NusA [Plautia stali symbiont]
Length = 495
Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats.
Identities = 202/511 (39%), Positives = 314/511 (61%), Gaps = 19/511 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A R Y D+RV I+ +GD FR
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATRKKYEQEIDVRVSIDRRSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVEEV T + +L+ AR D + ++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WVVVEEVTQPTRETTLEAARFEDEAFNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F+++ GEII+G VK+V N+ +DLGN+ + VI R++ + REN RPGDR++
Sbjct: 122 ERAMVVDQFREQEGEIITGVVKKVNRDNISLDLGNNAEAVIVREDMLPRENFRPGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V L+ AIGR GQNVRLAS L+ W ++++T ++ Q + + F +
Sbjct: 302 NHTMDIAVEAGNLAQAIGRNGQNVRLASLLSSWELNVMTVDDLQAKHQAEAHAAIDMFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A +LV EGF+ +EELA V I+E+ I+G DEET ++ RA+ L + +
Sbjct: 362 HLDIDEEFATVLVEEGFSSLEELAYVPINELLEIDGLDEETIEALRERAKNALTTLALAK 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + +E+L ++ G+D + L G+ T+EDLA VDDL
Sbjct: 422 EESLGNQEPAEDLLNLEGLDRALAYRLASKGVCTLEDLAEQGVDDLTDIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ ++I+ AR + W +
Sbjct: 472 -------GLDDEKAGALIMVAR-NICWFGDD 494
>gi|330830889|ref|YP_004393841.1| transcription elongation factor NusA [Aeromonas veronii B565]
gi|328806025|gb|AEB51224.1| transcription elongation factor NusA [Aeromonas veronii B565]
Length = 500
Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats.
Identities = 202/517 (39%), Positives = 314/517 (60%), Gaps = 22/517 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + DAV+ EK++ R+ + + ++ A + Y ++RVEI+ +TGD +R
Sbjct: 2 NKEILLVVDAVSNEKAVPREKIFQALETALATATKKKYEGEIEVRVEIDRKTGDYDTYRR 61
Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
V+ + +EN +I+L+ A+ P I IG V D + + F R+ Q+AKQVI+QKV
Sbjct: 62 WVVIADQAAMENPYAEITLEAAQIDQPEIQIGEYVEDQIDSVTFDRITTQTAKQVIVQKV 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181
REAER + +FKDK G IISG VK+ NVI+DLG N++ VI RD+ + RE RPGDR
Sbjct: 122 REAERSQVVDQFKDKEGTIISGVVKKSNRDNVILDLGSNAEAVIFRDDMLPRETFRPGDR 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V+ +Y VR E RG Q+ +SR+ P F+ +LF +EVPEI ++++ +RDPGSRAK+AV
Sbjct: 182 VRGLLYAVRPEARGSQLFVSRSSPDFLKELFRIEVPEIGEEMIEIMGAARDPGSRAKIAV 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
++D IDP+GAC+GMRG+RVQAV EL E+ DIV++ + A +VINA+ PA V +++
Sbjct: 242 KTNDRRIDPIGACIGMRGARVQAVSAELSGERADIVLYDDNPAQYVINAMAPADVASIIV 301
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED +++ V L+ AIGR GQNVRLASQLTGW ++++T E+ Q + +
Sbjct: 302 DEDNHTMDIAVEAANLAQAIGRNGQNVRLASQLTGWELNVMTVEDMRAKHQAENDRIMNL 361
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F +++D+ A LL+ EGF+ +EE+A V ++E+ +I+G DE+ E++ RA++ L
Sbjct: 362 FTSTLDIDDDFAGLLMEEGFSTLEEIAFVPVNELLAIDGLDEDMVEELRKRAKDALTTKA 421
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ ++ + SEEL ++ G+ ++ AL G+ T+EDLA +DDL
Sbjct: 422 LAKEESFDGVEPSEELLNLNGLSRELAYALAGRGVGTLEDLAEQGIDDLADIE------- 474
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518
G ++ +I+ AR + W +E+
Sbjct: 475 ----------GLTAEKAGELIMAAR-NICWFGEEQSE 500
>gi|269103408|ref|ZP_06156105.1| transcription termination protein NusA [Photobacterium damselae
subsp. damselae CIP 102761]
gi|268163306|gb|EEZ41802.1| transcription termination protein NusA [Photobacterium damselae
subsp. damselae CIP 102761]
Length = 494
Score = 475 bits (1222), Expect = e-131, Method: Composition-based stats.
Identities = 203/511 (39%), Positives = 317/511 (62%), Gaps = 20/511 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ +TG+ FR
Sbjct: 2 NKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKYEAEIDVRVTIDRKTGEFETFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+ V+EV T +I+L+ A+ D ++++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WKAVDEVTQPTLEITLEAAQFEDETVELGDFVEDEIQSVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER + +F D G++I+G VK+V VIVDLGN+ + VI RD+ + REN RPGDRV+
Sbjct: 122 ERAQIVAQFVDNEGDLITGVVKKVNRDAVIVDLGNNAEAVIGRDDQLPRENFRPGDRVRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y V E RG Q+ ++R+ P + +LF +EVPEI ++++ +RDPGSRAK+AV ++
Sbjct: 182 LLYKVAPEARGFQLFMTRSKPAMLSELFRIEVPEIGEELIELMGAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A +VINA+ PA V+ +++DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDENPAQYVINAMAPAEVSSIIVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V K L+ AIGR GQNVRLASQLTGW ++++T E+ Q++ E F +
Sbjct: 302 SHTMDIAVEKANLAQAIGRNGQNVRLASQLTGWELNVMTVEDLQKKHQEEAQESIDTFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A +LV EGF +EE+A V ++E+ +EG +EET E++ RA+E L I +
Sbjct: 362 YLDIDEDFASVLVTEGFTTLEEIAYVPVNELLEVEGLNEETIDELRNRAKEALTTIALAK 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + + +E+L ++ G++ ++ L GI T+EDLA DDL+
Sbjct: 422 EESL-DAEPAEDLLALEGLERELAFKLAAKGILTLEDLADQGTDDLIDIE---------- 470
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G + + +I+ AR + W E
Sbjct: 471 -------GVDEAKAGELIMAAR-NICWFGDE 493
>gi|53804603|ref|YP_113778.1| transcription elongation factor NusA [Methylococcus capsulatus str.
Bath]
gi|53758364|gb|AAU92655.1| N utilization substance protein A [Methylococcus capsulatus str.
Bath]
Length = 499
Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats.
Identities = 212/516 (41%), Positives = 322/516 (62%), Gaps = 27/516 (5%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + D V+ EK I+++V+ S + ++++ A + D+RV I+ +TGD FR
Sbjct: 3 NKEILLVVDVVSNEKDIEKEVIFSAIEEALRTATIKRHDGRYDVRVSIDRKTGDYETFRR 62
Query: 66 LEVVEE-------VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+VVE VE +ISL+ AR P I +G V +P ++FGR+A Q+AKQVI
Sbjct: 63 WQVVEPREEFGNGVEFPEREISLEEARKTHPGITVGEFVEEPFDSIEFGRIAAQTAKQVI 122
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLR 177
+QKVREAER + ++ +VGE+++G +KR+E GNV +DLG + + I RDE I RE++R
Sbjct: 123 VQKVREAERRKIADAYQSRVGELVTGVIKRIERGNVFLDLGGNVEAFIPRDEMIPRESVR 182
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
GDR++ + VR + RGPQ+ +SRT P+ ++ LF +EVPE+ ++++K +RDPG RA
Sbjct: 183 SGDRLRGILSAVRPDARGPQLFVSRTAPELLIALFRLEVPEVSENLIEIKGAARDPGVRA 242
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV S+D +DPVGACVGMRGSRVQAV EL E+IDI++W+ + A FV+NA+ PA +
Sbjct: 243 KVAVKSNDPRLDPVGACVGMRGSRVQAVSNELAGERIDIILWNENEAQFVVNAMSPAEIV 302
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
+V+DED +++ V E LS AIGR GQNVRLAS+LTGWT+++++ + Q++
Sbjct: 303 SIVVDEDRHSMDIAVADENLSQAIGRGGQNVRLASELTGWTLNVMSSTQADAKTQEETRR 362
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
Q F++ + VD +A +LV EGF+ VEELA V E+ IE FDE+ E++ RAR+ L
Sbjct: 363 LIQTFVEQLGVDGEVAEILVREGFSSVEELAYVPTKELLEIEEFDEDIVEELRNRARDAL 422
Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477
I ++K+ E+ SE+L + G+D ++ L +GI+T+EDLA +V DLL
Sbjct: 423 LIKAIASEEKLEEVEPSEDLLELEGMDRELAYRLARHGIRTLEDLADQAVPDLLDIE--- 479
Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
+++ +I+ AR W
Sbjct: 480 --------------DMEEEKAAELIMKARAS--WFS 499
>gi|260775410|ref|ZP_05884307.1| transcription termination protein NusA [Vibrio coralliilyticus ATCC
BAA-450]
gi|260608591|gb|EEX34756.1| transcription termination protein NusA [Vibrio coralliilyticus ATCC
BAA-450]
Length = 495
Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats.
Identities = 203/509 (39%), Positives = 322/509 (63%), Gaps = 19/509 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L +A+AV+ EK + R+ + + ++ + + + D+RVEI+ +TG+ FR
Sbjct: 4 EILAVAEAVSNEKGVPRERIFEALEIALATSTKKKHEIEIDVRVEIDRKTGEFDTFRRWL 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEVE+ T +ISL+ A+ D +I+IG V D + + F R+ Q+AKQVI+QKVREAER
Sbjct: 64 VVEEVESPTKEISLEAAQFDDETIEIGDYVEDEIESVTFDRITTQTAKQVIVQKVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186
+ +F D GE+++G VK+V +++DLGN+ + VI RD+ + REN RPGDRV+ +
Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRETIVLDLGNNAEAVILRDDQLPRENHRPGDRVRGLL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
Y V E RG Q+ ++R+ P+ + +LF +EVPEI I+++K +RDPGSRAK+AV ++D
Sbjct: 184 YRVAPEARGFQLFITRSKPEMLAELFRVEVPEIAEEIIELKGAARDPGSRAKIAVKTNDK 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED
Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDAH 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V + L+ AIGR GQNVRLASQLTGW ++++T E+ ++ + FM+ +
Sbjct: 304 AMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVEDLQKKHAEESQASIENFMKYL 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426
+++E A LLV EGF+ +EE+A V ++E+ ++G DE+ E++ RA++ L + + ++
Sbjct: 364 DIEEDFAQLLVEEGFSSLEEVAYVPVNELLEVDGLDEDLVEELRNRAKDALTTLALAQEE 423
Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486
L +E+L ++ G++ ++ L G+ T+EDLA +DDL G
Sbjct: 424 SFEGLEPAEDLLALEGLEREMAFKLAAKGVATLEDLADQGIDDLEGIE------------ 471
Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ +I+ AR + W ++
Sbjct: 472 -----GLTEEYAGELIMAAR-NICWFGED 494
>gi|149375756|ref|ZP_01893524.1| N utilization substance protein A [Marinobacter algicola DG893]
gi|149359881|gb|EDM48337.1| N utilization substance protein A [Marinobacter algicola DG893]
Length = 497
Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats.
Identities = 210/512 (41%), Positives = 325/512 (63%), Gaps = 23/512 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66
E+L + ++V+ EK +++DV+ + ++ AA+ Y +DIRV I+ TG+ FR
Sbjct: 4 EILLVVESVSNEKGVEKDVIFEAIELALATAAKKRYDDEEADIRVSIDRRTGEYETFRRW 63
Query: 67 EVVEEVENYT--CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV+ +++++ A D D S+ G + + + FGR+ Q+AKQ+I QKVRE
Sbjct: 64 LVVDNDAVPALGTELTMQEAEDIDKSLQPGDTHEEKVESVAFGRIGAQAAKQIIFQKVRE 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVK 183
AER + ++D+VGE++SGTVK+V NVIVDLG N++ ++ R+ I RE R GDRV+
Sbjct: 124 AERTKIVDSYRDRVGELVSGTVKKVTRDNVIVDLGANAEALLPREHLIPRETFRMGDRVR 183
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
S + ++R + RGPQ++LSRT PQ +++LF +EVPEI +++++ +RDPGSRAK+AV +
Sbjct: 184 SLLQEIRTDHRGPQLILSRTDPQMLIELFRIEVPEIAEELIEIRGAARDPGSRAKIAVKT 243
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
+D IDPVGACVGMRGSRVQAV EL E++DIV+W + A VINA+ PA V +V+DE
Sbjct: 244 NDRRIDPVGACVGMRGSRVQAVSNELGGERVDIVLWDDNPAQLVINAMAPAEVASIVMDE 303
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
D +EV V ++ L+ AIGR GQNVRLA+ LTGWT++++TEEE +++++N + F
Sbjct: 304 DRHTMEVAVAEDNLAQAIGRNGQNVRLATDLTGWTLNVMTEEEAGERQEQEYNSLLEHFT 363
Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423
++VDE A +L+ EGF +EE+A + + E+ +I+GFDEET E++ RA++ L +
Sbjct: 364 GNLDVDEEFAGVLIEEGFTSIEEVAYIPMEEMLAIDGFDEETVTELRRRAKDALLNQALA 423
Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483
++ + +E+L ++ G+D + L GI+TMEDLA SVDDLL
Sbjct: 424 SEEALEGAEPAEDLLAMDGMDRGLAFKLAGMGIRTMEDLAEQSVDDLLDIE--------- 474
Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G +++ +I+ AR W E +
Sbjct: 475 --------GMEEERAGQLIMAARAP--WFEDQ 496
>gi|117619535|ref|YP_857795.1| transcription elongation factor NusA [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117560942|gb|ABK37890.1| transcription elongation protein NusA [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 500
Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats.
Identities = 202/517 (39%), Positives = 314/517 (60%), Gaps = 22/517 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + DAV+ EK++ R+ + + ++ A + Y ++RVEI+ +TGD +R
Sbjct: 2 NKEILLVVDAVSNEKAVPREKIFQALETALATATKKKYEGEIEVRVEIDRKTGDYDTYRR 61
Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
V+ + +EN +I+L+ A+ P I IG V D + + F R+ Q+AKQVI+QKV
Sbjct: 62 WVVIADQAAMENPYAEITLEAAQIEQPEIQIGEYVEDQIDSVTFDRITTQTAKQVIVQKV 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181
REAER + +FKDK G IISG VK+ NVI+DLG N++ VI RD+ + RE RPGDR
Sbjct: 122 REAERSQVVDQFKDKEGTIISGVVKKSNRDNVILDLGSNAEAVIFRDDMLPRETFRPGDR 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++ +Y VR E RG Q+ +SR+ P F+ +LF +EVPEI ++++ +RDPGSRAK+AV
Sbjct: 182 IRGLLYAVRPEARGSQLFVSRSSPDFLKELFRIEVPEIGEEMIEIMGAARDPGSRAKIAV 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
++D IDP+GAC+GMRG+RVQAV EL E+ DIV++ + A +VINA+ PA V +++
Sbjct: 242 KTNDRRIDPIGACIGMRGARVQAVSAELSGERADIVLYDDNPAQYVINAMAPADVASIIV 301
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED +++ V L+ AIGR GQNVRLASQLTGW ++++T E+ Q + +
Sbjct: 302 DEDNHTMDIAVEAANLAQAIGRNGQNVRLASQLTGWELNVMTVEDMRAKHQAENDRILTL 361
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F +++D+ A LL+ EGF+ +EE+A V ++E+ +I+G DE+ E++ RA++ L
Sbjct: 362 FTSTLDIDDDFASLLMEEGFSTLEEIAFVPVNELLAIDGLDEDMVEELRKRAKDALTTKA 421
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ ++ + SEEL ++ G+ ++ AL GI T+EDLA +DDL
Sbjct: 422 LAKEESFEGVEPSEELLNLNGLGREMAYALAARGIGTLEDLAEQGIDDLADIE------- 474
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518
G ++ +I+ AR + W +E+
Sbjct: 475 ----------GLTAEKAGELIMAAR-NICWFGEEQSE 500
>gi|294011603|ref|YP_003545063.1| N utilization substance protein A [Sphingobium japonicum UT26S]
gi|292674933|dbj|BAI96451.1| N utilization substance protein A [Sphingobium japonicum UT26S]
Length = 523
Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats.
Identities = 280/520 (53%), Positives = 384/520 (73%), Gaps = 7/520 (1%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
+SAN+ ELL IA++VA EK ID+ +V+ M D+IQ+AAR+ YG +DIR +++PETGD+
Sbjct: 5 ISANKAELLAIANSVASEKMIDKAIVIEAMEDAIQRAARARYGAENDIRAKLDPETGDLR 64
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L+R++EVVE V++Y Q+ L+ A+ IG + DPLPP+D GR+ QSAKQVI QK
Sbjct: 65 LWRVVEVVEVVDDYFKQVDLRQAQKLKKDAVIGDFIVDPLPPIDLGRIDAQSAKQVIFQK 124
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VR+AER+RQ+ EFKD+VGEII+G VK VE+G+V+V+LG ++GVIRRD+ I RE +R GDR
Sbjct: 125 VRDAERERQHEEFKDRVGEIITGVVKSVEFGHVVVNLGRAEGVIRRDQQIPREVVRVGDR 184
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++S I +VRRE RGPQ+ LSR HP+FM KLF EVPEIY+G++++KA +RDPGSRAK+ V
Sbjct: 185 IRSVILNVRRENRGPQIFLSRAHPEFMKKLFAQEVPEIYDGVIEIKAAARDPGSRAKIGV 244
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S DSSIDPVGACVGM+GSRVQAVV E++ EKIDI+ WS D+ATFV+NAL+PA V +VV+
Sbjct: 245 ISRDSSIDPVGACVGMKGSRVQAVVQEMQGEKIDIIPWSEDTATFVVNALQPAQVARVVI 304
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DE+ RIEV+VP +QLSLAIGRRGQNVRLASQLTG IDI+TE + S RQK+F R++
Sbjct: 305 DEEEERIEVVVPDDQLSLAIGRRGQNVRLASQLTGKAIDIMTEADASEKRQKEFVARSEM 364
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F ++VDE ++ LLVAEGF ++EE+A V + E+A+IEGFDE+ A E+Q RA+E L+ +
Sbjct: 365 FQNELDVDETLSQLLVAEGFGELEEVAYVGVEELAAIEGFDEDLAAELQSRAQEALDRRE 424
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL-----LGWSEN 476
+++ + LGV + L +P + + V LG+ GIKT++DLA + D+L +
Sbjct: 425 AAAREERQALGVEDALADMPHLTEAMLVTLGKAGIKTLDDLADLATDELVAKKRVDQRRR 484
Query: 477 KGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
+ E G L+ G ++Q +I+ AR W E E+
Sbjct: 485 RENKEEDKGGILAEYGLTEEQGNEIIMAARAH--WFEGEE 522
>gi|15599939|ref|NP_253433.1| transcription elongation factor NusA [Pseudomonas aeruginosa PAO1]
gi|107103844|ref|ZP_01367762.1| hypothetical protein PaerPA_01004915 [Pseudomonas aeruginosa PACS2]
gi|116052892|ref|YP_793209.1| transcription elongation factor NusA [Pseudomonas aeruginosa
UCBPP-PA14]
gi|152989172|ref|YP_001350787.1| transcription elongation factor NusA [Pseudomonas aeruginosa PA7]
gi|218893840|ref|YP_002442709.1| transcription elongation factor NusA [Pseudomonas aeruginosa
LESB58]
gi|254238519|ref|ZP_04931842.1| N utilization substance protein A [Pseudomonas aeruginosa C3719]
gi|254244353|ref|ZP_04937675.1| N utilization substance protein A [Pseudomonas aeruginosa 2192]
gi|296391572|ref|ZP_06881047.1| transcription elongation factor NusA [Pseudomonas aeruginosa PAb1]
gi|313109726|ref|ZP_07795666.1| N utilization substance protein A [Pseudomonas aeruginosa 39016]
gi|9951007|gb|AAG08131.1|AE004888_6 N utilization substance protein A [Pseudomonas aeruginosa PAO1]
gi|115588113|gb|ABJ14128.1| N utilization substance protein A [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126170450|gb|EAZ55961.1| N utilization substance protein A [Pseudomonas aeruginosa C3719]
gi|126197731|gb|EAZ61794.1| N utilization substance protein A [Pseudomonas aeruginosa 2192]
gi|150964330|gb|ABR86355.1| N utilization substance protein A [Pseudomonas aeruginosa PA7]
gi|218774068|emb|CAW29884.1| N utilization substance protein A [Pseudomonas aeruginosa LESB58]
gi|310882168|gb|EFQ40762.1| N utilization substance protein A [Pseudomonas aeruginosa 39016]
Length = 493
Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats.
Identities = 209/509 (41%), Positives = 324/509 (63%), Gaps = 22/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + ++V+ EK + V+ + ++ A + + D+RVEIN G FR
Sbjct: 4 EVLLVVESVSNEKGVPAGVIFEALELALATATKKRFEDEVDLRVEINRHNGSYETFRRWH 63
Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV E+ ++ +I+++ +++ P +G V+ + + ++FGR+A Q+AKQVI+QKVREA
Sbjct: 64 VVADEDYQDPATEITVEDVQEQKPGAKVGEVIEEKIESIEFGRIAAQTAKQVIVQKVREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER + +++KVGEIISGTVK+V NVIVDLGN+ + ++ RD+ I RE R G RV++
Sbjct: 124 ERAQVVDAYREKVGEIISGTVKKVTRDNVIVDLGNNAEALLARDQIIPRETFRVGTRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ ++R E RGPQ++LSRT P+ +++LF +EVPEI ++ V A +RDPGSRAK+AV S
Sbjct: 184 LLKEIRTENRGPQLVLSRTAPEMLIELFRIEVPEIAEQLIDVMAAARDPGSRAKIAVRSK 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP GAC+GMRGSRVQAV E+ E++DIV+W + A FVINA+ PA V +++DED
Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGEIGGERVDIVLWDDNPAQFVINAMAPAEVAAIIVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V ++ L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + Q F+
Sbjct: 304 THTMDIAVAEDNLAQAIGRSGQNVRLASQLTGWTLNVMTEADIQAKQQAETGDILQRFVD 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +LV EGF +EE+A V + E+ SI+GFDE+ E++ RA++ L I
Sbjct: 364 ELDVDEELAQVLVEEGFTTLEEIAYVPMEEMLSIDGFDEDIVNELRSRAKDRLLTKAIAT 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +E+L S+ G+ ++ + L G+ T EDLA S+DDLL
Sbjct: 424 EEKLADAQPAEDLLSLDGMSKELALDLALRGVTTREDLAEQSIDDLLDID---------- 473
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513
G +++ +I+ AR W E
Sbjct: 474 -------GMDEERAGKLIMAARAH--WFE 493
>gi|83595108|ref|YP_428860.1| transcription elongation factor NusA [Rhodospirillum rubrum ATCC
11170]
gi|83578022|gb|ABC24573.1| NusA antitermination factor [Rhodospirillum rubrum ATCC 11170]
Length = 516
Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats.
Identities = 285/521 (54%), Positives = 385/521 (73%), Gaps = 18/521 (3%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
V +R EL+Q+AD VA +KSI+R+ V + M +IQKA RS YG DIR I+ +TG+I
Sbjct: 5 VGMSRPELVQVADTVARDKSIEREEVFAAMEQAIQKAGRSKYGHEHDIRARIDRKTGEIR 64
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L R +EVVEEVEN QI+L A+ + I++G + DPLPP+DFGR+A Q+AKQVI+QK
Sbjct: 65 LARYIEVVEEVENEFTQITLAGAKRKKADIELGEFLVDPLPPIDFGRIAAQTAKQVIVQK 124
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VR+AER+RQ+ E+KD++GEII+G VKRVE+GNVIVD+G ++ ++RRDE I RE+ + GDR
Sbjct: 125 VRDAERERQFAEYKDRLGEIINGLVKRVEFGNVIVDMGRAEALLRRDEVIPREHFKNGDR 184
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+++YI DVR+E RGPQ+ LSRTH QFM KLF EVPEIY+GI+++K+V+RDPGSRAK+AV
Sbjct: 185 IRAYIMDVRQEPRGPQIFLSRTHEQFMAKLFAQEVPEIYDGIIEIKSVARDPGSRAKIAV 244
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+D +IDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D ATFV+NAL PA V KVVL
Sbjct: 245 LSNDHAIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWATDPATFVVNALAPAEVAKVVL 304
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DE+ RIEV+VP EQLSLAIGRRGQNVRLAS+LTGW IDI+TE E+S RQ +F RTQ
Sbjct: 305 DEEANRIEVVVPDEQLSLAIGRRGQNVRLASKLTGWDIDILTEAEESERRQDEFRIRTQA 364
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F++A++VD++IAHLLV EGF VE++A V I+E++ IEGFDE+ A E+Q RA+ +L +
Sbjct: 365 FIEALDVDDVIAHLLVTEGFTTVEDVAFVAIAELSEIEGFDEDVASELQNRAQVFLAERE 424
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+++ +ELGV +E+ I G+ + + VALGE G+KT++DL + D+L+
Sbjct: 425 RLNEERRKELGVVDEMAEIEGLTAAMLVALGEKGVKTLDDLGDLASDELIEIVG------ 478
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEV 522
G +D ++I+ AR W + + ++
Sbjct: 479 ----------GLNEDDANAVIMAARAH--WFGEAGDSADDA 507
>gi|27365056|ref|NP_760584.1| transcription elongation factor NusA [Vibrio vulnificus CMCP6]
gi|37680893|ref|NP_935502.1| transcription elongation factor NusA [Vibrio vulnificus YJ016]
gi|320155440|ref|YP_004187819.1| transcription termination protein NusA [Vibrio vulnificus MO6-24/O]
gi|27361202|gb|AAO10111.1| Transcription termination protein NusA [Vibrio vulnificus CMCP6]
gi|37199642|dbj|BAC95473.1| n utilization substance protein A [Vibrio vulnificus YJ016]
gi|319930752|gb|ADV85616.1| transcription termination protein NusA [Vibrio vulnificus MO6-24/O]
Length = 495
Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats.
Identities = 200/509 (39%), Positives = 318/509 (62%), Gaps = 19/509 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L +A+AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG+ FR
Sbjct: 4 EILAVAEAVSNEKAVPRERIFEALEIALATSTKKKYEIEIDVRVAIDRKTGEFVTFRRWL 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EVEN T +IS + A D S+ +G + + + + F R+ Q+AKQVI+QKVREAER
Sbjct: 64 VVDEVENPTKEISFEAANYDDESVQLGDFIEEEIESVTFDRITTQTAKQVIVQKVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186
+ +F D G++++G VK+V V++DLGN+ + VI RD+ + REN RPGDRV+ +
Sbjct: 124 AQIVEQFIDNEGDLVTGVVKKVNRETVVLDLGNNAEAVILRDDQLPRENFRPGDRVRGLL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
Y V E RG Q+ ++R+ P+ + +LF +EVPEI I+++K +RDPGSRAK+AV ++D
Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIAEEIIELKGAARDPGSRAKIAVKTNDR 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED
Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDAH 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V L+ AIGR GQNVRLASQLTGW ++++T E+ ++ FM+ +
Sbjct: 304 SMDIAVEAGNLAQAIGRNGQNVRLASQLTGWELNVMTVEDLQKKHAEESQASIDNFMKYL 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426
+++E A LLV EGF+ +EE+A V ++E+ +EG DE+ E++ RA++ L I + ++
Sbjct: 364 DIEEDFAQLLVEEGFSTLEEVAYVPVNELLEVEGLDEDLIEELRSRAKDALTTIALAREE 423
Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486
+ +E+L ++ G++ ++ L G+ ++EDLA +DDL G
Sbjct: 424 SFEGVEPAEDLLNLEGLEREMAFKLAAKGVASLEDLADQGIDDLEGID------------ 471
Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G +++ +I+ AR + W +E
Sbjct: 472 -----GLTEERAGQLIMAAR-NICWFGEE 494
>gi|157376522|ref|YP_001475122.1| transcription elongation factor NusA [Shewanella sediminis HAW-EB3]
gi|157318896|gb|ABV37994.1| NusA antitermination factor [Shewanella sediminis HAW-EB3]
Length = 499
Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats.
Identities = 196/516 (37%), Positives = 315/516 (61%), Gaps = 23/516 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK + R+ + + ++ A + Y ++RVEI+ +TG FR
Sbjct: 2 NKEILLVTEAVSNEKGVPREKIFEALEIALATATKKKYEGDIEVRVEIDRKTGAYETFRR 61
Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
VVE+ +EN +I+L+ A+ +P I +G + D + + F R+ Q+AKQVI+QK
Sbjct: 62 WMVVEDTGEPLENPFSEITLEAAQFEEPEIQLGEYIEDDIESVVFDRITTQTAKQVIVQK 121
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGD 180
VREAER + +FKDK GE+I+G VK+ +V+VDLG N+D V+ +++ ISRE+ RPGD
Sbjct: 122 VREAERAQIVDQFKDKEGELITGVVKKSNRESVVVDLGSNADAVLFKEDLISRESFRPGD 181
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
RV++ ++ VR E RG Q+ L+RT P +++LF +EVPEI + ++++ +RDPGSRAK+A
Sbjct: 182 RVRALLFAVRPEARGAQLFLTRTKPDMLIELFRVEVPEIADEMIEIMGAARDPGSRAKIA 241
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VINA+ PA V ++
Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELNGERVDIVLWDDNPAQYVINAMAPADVASII 301
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DED +++ V + L+ AIGR GQNVRLA+QL+GW ++++T + Q + +
Sbjct: 302 VDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLSGWELNVMTVADMQAKHQAESAKVVN 361
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
F+ ++ VDE A +L EGF +EE+A V SE+ I+GFDE+ ++ RA+ +
Sbjct: 362 LFVTSLEVDEDFAQVLADEGFTSLEEVAYVPASELMDIDGFDEDIVETLRERAKAAISTR 421
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ ++ + SE+L ++ G++ + G+ T+EDLA +DDL+ E
Sbjct: 422 ALASEEALDGAEPSEDLLALEGLERHLAFVFASKGVITLEDLAEQGIDDLIDIEE----- 476
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
+++ +I+ AR + W E+
Sbjct: 477 ------------LTEEKAGELIMAAR-NICWFGDEE 499
>gi|270265058|ref|ZP_06193321.1| transcription elongation protein NusA [Serratia odorifera 4Rx13]
gi|270040992|gb|EFA14093.1| transcription elongation protein NusA [Serratia odorifera 4Rx13]
Length = 502
Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats.
Identities = 197/517 (38%), Positives = 310/517 (59%), Gaps = 26/517 (5%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR
Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
V+EV T +I+L+ A+ +P I++GG + D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WVAVDEVTQPTREITLEAAQYEEPGIELGGYIEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184
ER F+ GEI++G VK+V ++ +DLG N++ VI R++ + REN RPGDR++
Sbjct: 122 ERAMVVDAFRQHEGEIVTGVVKKVNRDSIALDLGSNAEAVIGREDMLPRENFRPGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y VR E RG Q+ +SR+ + + +LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 ILYAVRPEARGAQLFVSRSSAEMLKELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDI++W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG-------WTIDIITEEEDSINRQKDFNE 357
+++ V L+ AIGR GQNVRLASQL W ++++T ++ Q + +
Sbjct: 302 NCTMDIAVEASNLAQAIGRNGQNVRLASQLLKQHRDDDRWELNVMTADDLQAKHQAEAHA 361
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
F + +++DE A +LV EGF+ +EELA V I E+ I+G DE+ ++ RA+ L
Sbjct: 362 AIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPIKELLEIDGLDEDMVEALRDRAKAAL 421
Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477
+ + ++ + + +++L ++PG++ + L G+ T+EDLA VDDL
Sbjct: 422 TTLALAQEESLGDQKPADDLLNLPGLERSMAFKLAARGVCTLEDLAEQGVDDLADIE--- 478
Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
G +Q +I+ AR + W
Sbjct: 479 --------------GLSDEQAGELIMAAR-NICWFGD 500
>gi|157368735|ref|YP_001476724.1| transcription elongation factor NusA [Serratia proteamaculans 568]
gi|157320499|gb|ABV39596.1| NusA antitermination factor [Serratia proteamaculans 568]
Length = 502
Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats.
Identities = 197/517 (38%), Positives = 310/517 (59%), Gaps = 26/517 (5%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR
Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
V+EV T +I+L+ A+ +P I++GG + D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WVAVDEVTQPTREITLEAAQYEEPGIELGGYIEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184
ER F+ GEI++G VK+V ++ +DLG N++ VI R++ + REN RPGDR++
Sbjct: 122 ERAMVVDAFRQHEGEIVTGVVKKVNRDSIALDLGSNAEAVIGREDMLPRENFRPGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y VR E RG Q+ +SR+ + + +LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 ILYAVRPEARGAQLFVSRSSAEMLKELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDI++W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG-------WTIDIITEEEDSINRQKDFNE 357
+++ V L+ AIGR GQNVRLASQL W ++++T ++ Q + +
Sbjct: 302 NCTMDIAVEASNLAQAIGRNGQNVRLASQLLKQHRDDDRWELNVMTADDLQAKHQAEAHA 361
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
F + +++DE A +LV EGF+ +EELA V I E+ I+G DE+ ++ RA+ L
Sbjct: 362 AIDTFTKHLDIDEDFATVLVEEGFSTLEELAYVPIKELLEIDGLDEDMVEALRDRAKAAL 421
Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477
+ + ++ + + +++L ++PG++ + L G+ T+EDLA VDDL
Sbjct: 422 TTLALAQEESLGDQKPADDLLNLPGLERSMAFKLAARGVCTLEDLAEQGVDDLADIE--- 478
Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
G +Q +I+ AR + W
Sbjct: 479 --------------GLSDEQAGELIMAAR-NICWFGD 500
>gi|323491074|ref|ZP_08096266.1| transcription elongation factor NusA [Vibrio brasiliensis LMG
20546]
gi|323314738|gb|EGA67810.1| transcription elongation factor NusA [Vibrio brasiliensis LMG
20546]
Length = 495
Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats.
Identities = 203/510 (39%), Positives = 319/510 (62%), Gaps = 19/510 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + +AV+ EK++ R+ + + ++ + + + D+RVEI+ +TG+ FR
Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALEIALATSTKKKHEIEIDVRVEIDRKTGEFETFRRWL 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEVEN T +ISL+ A+ D I +G V D + + F R+ Q+AKQVI+QKVREAER
Sbjct: 64 VVEEVENPTKEISLEAAQYEDAEIQLGDFVEDDIESVTFDRITTQTAKQVIVQKVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186
+ +F D GE+++G VK+V V++DLGN+ + VI RD+ + REN RPGDRV+ +
Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRETVVLDLGNNAEAVILRDDQLPRENFRPGDRVRGLL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
Y V E RG Q+ ++R+ P+ + +LF +EVPEI I+++K +RDPGSRAK+AV ++D
Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIAEEIIELKGAARDPGSRAKIAVKTNDK 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED
Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDAN 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V + L+ AIGR GQNVRLASQLTGW ++++T E+ ++ + FM+ +
Sbjct: 304 AMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVEDLHKKHAEESQAAIEGFMKHL 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426
+++E A LLV EGF+ +EE+A V ++E+ ++G DE+ E++ RA+ L + + ++
Sbjct: 364 DIEEDFAQLLVEEGFSTLEEVAYVPVNELLEVDGLDEDLVEELRNRAKNALTTLALAQEE 423
Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486
+ +E+L + G++ ++ L G+ T+EDLA +DDL G
Sbjct: 424 SFEGVEPAEDLLGLEGLEREMAFKLAAKGVATLEDLADQGIDDLEGIE------------ 471
Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
G +++ +I+ AR + W E+
Sbjct: 472 -----GLTEERAGELIMAAR-NICWFGDEE 495
>gi|167625060|ref|YP_001675354.1| transcription elongation factor NusA [Shewanella halifaxensis
HAW-EB4]
gi|167355082|gb|ABZ77695.1| NusA antitermination factor [Shewanella halifaxensis HAW-EB4]
Length = 499
Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats.
Identities = 202/515 (39%), Positives = 318/515 (61%), Gaps = 23/515 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L +A+AV+ EK + R+ + + ++ A + Y ++RV I+ +TG FR
Sbjct: 2 NKEILLVAEAVSNEKGVPREKIFEALEIALATATKKKYEGDIEVRVAIDRKTGAYETFRR 61
Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
VVE+ +EN +I+L+ A+ DP I++GG + D + + F R+ Q+AKQVI+QK
Sbjct: 62 WMVVEDAGVPLENPFREITLEAAKYDDPEIELGGYIEDEIDSVAFDRITTQTAKQVIVQK 121
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180
VREAER + +F+D+ GE+I G VK+ +V+VDLGN+ DGV+ R++ ISRE+ RPGD
Sbjct: 122 VREAERAQIVDQFRDREGELIVGVVKKSNRESVVVDLGNNADGVLFREDLISRESFRPGD 181
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
RV++ +Y VR E RG Q+ L+RT P +++LF +EVPEI + ++++ +RDPGSRAK+A
Sbjct: 182 RVRALLYSVRPEARGAQLFLTRTKPDMLIELFRVEVPEIQDEMIEIMGAARDPGSRAKIA 241
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VIN + PA V ++
Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINCMAPADVASII 301
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DED +++ V + L+ AIGR GQN+RLA+QL+GW ++++T ++ Q + +
Sbjct: 302 VDEDNHSMDIAVEADSLAQAIGRNGQNIRLATQLSGWELNVMTVDDMKAKHQAESVKVVN 361
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
F+QA++VDE A LL EGF +EE+A V SE+ I+GFDE+ ++GRA+ +
Sbjct: 362 LFIQALDVDEDFAQLLSDEGFTSLEEIAYVPESELLEIDGFDEDIVESLRGRAKAAISTR 421
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ ++ + SE+L ++ G+D + + G+ T+EDLA +DDL+ E
Sbjct: 422 ALATEEALDGAEPSEDLLALEGLDRHLAFVMASKGVITLEDLAEQGIDDLIEIEELTEEK 481
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
+I+ AR + W +E
Sbjct: 482 -----------------AGELIMAAR-NICWFGEE 498
>gi|329896244|ref|ZP_08271422.1| Transcription termination protein NusA [gamma proteobacterium
IMCC3088]
gi|328921915|gb|EGG29282.1| Transcription termination protein NusA [gamma proteobacterium
IMCC3088]
Length = 496
Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats.
Identities = 206/511 (40%), Positives = 328/511 (64%), Gaps = 22/511 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L +A+AV+ EK + D++ + ++ A + Y SDI V IN +TGD R
Sbjct: 4 EILLVAEAVSNEKGVSEDIIFEAIELALATATKKRYDEDSDIHVTINRKTGDYVTVRRWL 63
Query: 68 VVEEVEN--YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV + E Q++ + A ++DPS+ G V + + + FGR+A Q+AKQVI+Q+VREA
Sbjct: 64 VVPDDELALLGTQLTTEEAIEKDPSLVPGDVFEETVENVGFGRIAAQTAKQVIVQRVREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER + +++ +VGE+++G+VK+V N+IVDLGN+ +G++ R + RE R DR+++
Sbjct: 124 ERAQIVDQYRGRVGELVAGSVKKVTRDNIIVDLGNNAEGLLPRGNLVGRETFRVNDRLRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ ++ E RGPQ++LSR+ + +++LF +EVPEI G++Q++A +RDPGSRAK+AV ++
Sbjct: 184 ILTEISTEIRGPQLILSRSCSEMLIELFRIEVPEIAEGVIQIRAAARDPGSRAKIAVKTN 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRGSRVQAV EL +E++DI++W + A VINA+ PA V +V+DED
Sbjct: 244 DQRIDPVGACVGMRGSRVQAVSNELDNERVDIILWDDNPAQLVINAMSPAEVESIVVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V V ++ L+ AIGR GQNVRLAS+LTGW I++++ EE ++ + + Q F++
Sbjct: 304 THTMDVAVSEDNLAQAIGRSGQNVRLASELTGWMINVMSTEEAQEKQEAEVGQVLQLFVE 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +LV EGF +EE+A V + E+ +IEGFDEE + E++ RA++ L + I
Sbjct: 364 RLDVDEDVAEVLVEEGFTTLEEVAYVPLEEMMAIEGFDEEISEELRARAKDALLTMAIAS 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++++ +++L ++ G+D + L GI TMEDLA VDDL+ E
Sbjct: 424 EEQLGANEPADDLLNMEGMDRHLAFILASRGIVTMEDLAEQGVDDLMEIPE--------- 474
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
+++ S+I+ AR W +E
Sbjct: 475 --------MDEERAGSLIMTARAP--WFAEE 495
>gi|120597899|ref|YP_962473.1| transcription elongation factor NusA [Shewanella sp. W3-18-1]
gi|146293929|ref|YP_001184353.1| transcription elongation factor NusA [Shewanella putrefaciens
CN-32]
gi|120557992|gb|ABM23919.1| NusA antitermination factor [Shewanella sp. W3-18-1]
gi|145565619|gb|ABP76554.1| NusA antitermination factor [Shewanella putrefaciens CN-32]
Length = 499
Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats.
Identities = 204/515 (39%), Positives = 322/515 (62%), Gaps = 23/515 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L +A+AV+ EK++ R+ + + ++ A + Y D+RV I+ +TG FR
Sbjct: 2 NKEILLVAEAVSNEKAVPREKIFEALEIALATATKKKYDGDIDVRVAIDRKTGGYETFRR 61
Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
VV++ +EN +I+L+ AR +P I G + D + + F R+ Q+AKQVI+QK
Sbjct: 62 WMVVDDHGEALENPFREITLEAARYENPDIQPGEFIEDDIESVVFDRITTQTAKQVIVQK 121
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180
VREAER + +F+DK GE+I+G VK+ +V+VDLGN+ DGV+ R++ ISRE+ RPGD
Sbjct: 122 VREAERAQVVEQFRDKEGELITGVVKKATRESVVVDLGNNADGVLFREDLISRESFRPGD 181
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
RV++ +Y VR E RG Q+ LSRT P+ +++LF +EVPEI + +++V +RDPG+RAK+A
Sbjct: 182 RVRALLYSVRPEARGAQLFLSRTKPEMLIELFRVEVPEIADELIEVMGAARDPGARAKIA 241
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VINA+ PA V ++
Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINAMAPADVASII 301
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DED +++ V + L+ AIGR GQNVRLA+QLTGW ++++T E+ + Q + +
Sbjct: 302 VDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLTGWELNVMTVEDMNKKHQAESAKVVS 361
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
F+ +++VDE A +L EGF +EE+A V +SE+ +I+GFDE+ ++ RA+ +
Sbjct: 362 LFINSLDVDEDFAQVLANEGFTSLEEVAYVPVSELLAIDGFDEDLVEALRERAKAAISTR 421
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ ++ + + S+EL ++ G++ + L GI T+EDLA +DDL+ E
Sbjct: 422 ALASEEALDGVEPSDELLALEGVERHLAYVLASKGIVTLEDLAEQGIDDLIEIEELTEEK 481
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
++I+ AR + W +E
Sbjct: 482 -----------------AGTLIMAAR-NICWFGEE 498
>gi|229525295|ref|ZP_04414700.1| transcription termination protein NusA [Vibrio cholerae bv.
albensis VL426]
gi|229338876|gb|EEO03893.1| transcription termination protein NusA [Vibrio cholerae bv.
albensis VL426]
Length = 495
Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats.
Identities = 202/509 (39%), Positives = 316/509 (62%), Gaps = 19/509 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + +AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG FR
Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRRWL 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVE VE+ T +IS A D S+ +G + D + + F R+ Q+AKQVI+QKVREAER
Sbjct: 64 VVENVEHPTKEISFDAASFDDDSVQLGDYIEDQIDSVTFDRITTQTAKQVIVQKVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186
+ +F D GE+++G VK+V VI+DLGN+ + VI R++ + REN RPGDRV+ +
Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRGLL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
Y V E RG Q+ ++R+ P+ + +LF +EVPEI ++++KA +RDPGSRAK+AV ++D
Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTNDK 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED
Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDEDAH 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ +
Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMKYL 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426
++++ A LLV EGF+ +EE+A V ++E+ ++G DE+ A E++ RA+E L I + ++
Sbjct: 364 DIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTIALAKEE 423
Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486
L +E+L ++ G++ + L G+ T+EDLA VDDL G
Sbjct: 424 SFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIE------------ 471
Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G + + +I+ AR + W ++
Sbjct: 472 -----GLTEQRAGELIMAAR-NICWFGED 494
>gi|213052982|ref|ZP_03345860.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
Length = 495
Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats.
Identities = 199/512 (38%), Positives = 315/512 (61%), Gaps = 24/512 (4%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR +V
Sbjct: 1 MAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRRWLIV 60
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
EEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREAER
Sbjct: 61 EEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAM 120
Query: 130 QYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPGDRVK 183
+F+D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPGDR++
Sbjct: 121 VVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPGDRIR 180
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV +
Sbjct: 181 GVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
+D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DE
Sbjct: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
D +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + + F
Sbjct: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIEIFT 360
Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423
+ +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L +
Sbjct: 361 KYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALATLAQD 420
Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483
+ + + +++L ++ G+D + L G+ T+EDLA +DDL
Sbjct: 421 QEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIE--------- 471
Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ +I+ AR + W E
Sbjct: 472 --------GLTDEKAGELIMAAR-NICWFGDE 494
>gi|163752374|ref|ZP_02159569.1| transcription elongation factor NusA [Shewanella benthica KT99]
gi|161327746|gb|EDP98933.1| transcription elongation factor NusA [Shewanella benthica KT99]
Length = 499
Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats.
Identities = 196/516 (37%), Positives = 317/516 (61%), Gaps = 23/516 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L +A+AV+ EK + R+ + + ++ A + + ++RVEI+ +TG FR
Sbjct: 2 NKEILLVAEAVSNEKGVPREKIFEALEIALATATKKKHVGEIEVRVEIDRKTGAYETFRR 61
Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
+VVE+ +EN +I+L+ A+ DP + +G V D + + F R+ Q+AKQVI+QK
Sbjct: 62 WQVVEDTGEPLENPYGEITLEAAQYEDPELQVGDYVEDDMESVTFDRITTQTAKQVIVQK 121
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180
VREAER + FKD+ GE+I+G VK+ +V+VDLG + D V+ +++ ISREN RPGD
Sbjct: 122 VREAERAQVVELFKDREGELITGIVKKSNRESVVVDLGGNADAVLFKEDLISRENFRPGD 181
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
R+++ ++ VR E RG Q+ ++RT + +++LF +EVPEI + ++++ +RDPGSRAK+A
Sbjct: 182 RIRALLFSVRPEARGAQLFMTRTKSEMLIELFRIEVPEIADEMIEIMGAARDPGSRAKIA 241
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A FVINA+ PA V +V
Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELNGERVDIVLWDDNPAQFVINAMAPAEVASIV 301
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DED +++ V + L+ AIGR GQNVRLA+QL+GW ++++T E+ Q + +
Sbjct: 302 VDEDSHSMDIAVEADSLAQAIGRNGQNVRLAAQLSGWELNVMTVEDLQKKHQAESAKVVS 361
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
F+ ++ VDE A +L EGF +EE+A V +E+ I+GFDE+T ++ RA+ +
Sbjct: 362 LFVASLEVDEDFAQVLADEGFTSLEEVAYVPAAELMEIDGFDEDTVEALRERAKAAISTR 421
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ ++ + SE+L ++ G+D + G+ T+E+LA +DDL+ E
Sbjct: 422 ALATEEALDGAAPSEDLLALEGLDKHLAFVFASKGVITLENLAEQGIDDLIDIEE----- 476
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
+++ +I+ AR + W E+
Sbjct: 477 ------------LTEEKAGELIMAAR-NICWFGDEE 499
>gi|307293340|ref|ZP_07573186.1| transcription termination factor NusA [Sphingobium chlorophenolicum
L-1]
gi|306881406|gb|EFN12622.1| transcription termination factor NusA [Sphingobium chlorophenolicum
L-1]
Length = 523
Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats.
Identities = 280/520 (53%), Positives = 384/520 (73%), Gaps = 7/520 (1%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
+SAN+ ELL IA++VA EK ID+ +V+ M D+IQ+AAR+ YG +DIR +++PETGD+
Sbjct: 5 ISANKAELLAIANSVASEKMIDKAIVIEAMEDAIQRAARARYGAENDIRAKLDPETGDLR 64
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L+R++EVVE V++Y Q+ L+ A+ IG + DPLPP+D GR+ QSAKQVI QK
Sbjct: 65 LWRVVEVVEAVDDYFKQVDLRQAQKLKKDAVIGDFIVDPLPPIDLGRIDAQSAKQVIFQK 124
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VR+AER+RQ+ EFKD+VGEII+G VK VE+G+V+V+LG ++GVIRRD+ I RE +R GDR
Sbjct: 125 VRDAERERQHEEFKDRVGEIITGVVKSVEFGHVVVNLGRAEGVIRRDQQIPREVVRVGDR 184
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++S I +VRRE RGPQ+ LSR HP+FM KLF EVPEIY+G++++KA +RDPGSRAK+ V
Sbjct: 185 IRSVILNVRRENRGPQIFLSRAHPEFMKKLFAQEVPEIYDGVIEIKAAARDPGSRAKIGV 244
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S DSSIDPVGACVGM+GSRVQAVV E++ EKIDI+ WS D+ATFV+NAL+PA V +VV+
Sbjct: 245 ISRDSSIDPVGACVGMKGSRVQAVVQEMQGEKIDIIPWSEDTATFVVNALQPAQVARVVI 304
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DE+ RIEV+VP +QLSLAIGRRGQNVRLASQLTG IDI+TE + S RQK+F R++
Sbjct: 305 DEEEERIEVVVPDDQLSLAIGRRGQNVRLASQLTGKAIDIMTEADASEKRQKEFVARSEL 364
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F ++VDE ++ LLVAEGF ++EE+A V + E+A+IEGFDE+ A E+Q RA+E L+ +
Sbjct: 365 FQNELDVDETLSQLLVAEGFGELEEVAYVGVEELAAIEGFDEDLAAELQSRAQEALDRRE 424
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL-----LGWSEN 476
+++ + LGV + L +P + + V LG+ GIKT++DLA + D+L +
Sbjct: 425 AAAREERQALGVEDALADMPHLTEAMLVTLGKAGIKTLDDLADLATDELVAKKRVDQRRR 484
Query: 477 KGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
+ E G L+ G ++Q +I+ AR W E E+
Sbjct: 485 RENKEEDKGGILAEYGLSEEQGNEIIMAARAH--WFEGEE 522
>gi|15640662|ref|NP_230291.1| transcription elongation factor NusA [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|121728410|ref|ZP_01681438.1| N utilization substance protein A [Vibrio cholerae V52]
gi|147674353|ref|YP_001216136.1| transcription elongation factor NusA [Vibrio cholerae O395]
gi|153801994|ref|ZP_01956580.1| N utilization substance protein A [Vibrio cholerae MZO-3]
gi|153818700|ref|ZP_01971367.1| N utilization substance protein A [Vibrio cholerae NCTC 8457]
gi|153822531|ref|ZP_01975198.1| N utilization substance protein A [Vibrio cholerae B33]
gi|153829178|ref|ZP_01981845.1| N utilization substance protein A [Vibrio cholerae 623-39]
gi|227080823|ref|YP_002809374.1| N utilization substance protein A [Vibrio cholerae M66-2]
gi|229505736|ref|ZP_04395246.1| transcription termination protein NusA [Vibrio cholerae BX 330286]
gi|229509231|ref|ZP_04398716.1| transcription termination protein NusA [Vibrio cholerae B33]
gi|229519560|ref|ZP_04409003.1| transcription termination protein NusA [Vibrio cholerae RC9]
gi|229608847|ref|YP_002879495.1| transcription elongation factor NusA [Vibrio cholerae MJ-1236]
gi|254850876|ref|ZP_05240226.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|255744141|ref|ZP_05418094.1| transcription termination protein NusA [Vibrio cholera CIRS 101]
gi|262156117|ref|ZP_06029236.1| transcription termination protein NusA [Vibrio cholerae INDRE 91/1]
gi|262169941|ref|ZP_06037631.1| transcription termination protein NusA [Vibrio cholerae RC27]
gi|297580768|ref|ZP_06942694.1| N utilization substance protein A [Vibrio cholerae RC385]
gi|298500758|ref|ZP_07010561.1| transcription elongation factor NusA [Vibrio cholerae MAK 757]
gi|9655078|gb|AAF93808.1| N utilization substance protein A [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121629344|gb|EAX61776.1| N utilization substance protein A [Vibrio cholerae V52]
gi|124122453|gb|EAY41196.1| N utilization substance protein A [Vibrio cholerae MZO-3]
gi|126510780|gb|EAZ73374.1| N utilization substance protein A [Vibrio cholerae NCTC 8457]
gi|126519949|gb|EAZ77172.1| N utilization substance protein A [Vibrio cholerae B33]
gi|146316236|gb|ABQ20775.1| N utilization substance protein A [Vibrio cholerae O395]
gi|148875367|gb|EDL73502.1| N utilization substance protein A [Vibrio cholerae 623-39]
gi|227008711|gb|ACP04923.1| N utilization substance protein A [Vibrio cholerae M66-2]
gi|227012467|gb|ACP08677.1| N utilization substance protein A [Vibrio cholerae O395]
gi|229344249|gb|EEO09224.1| transcription termination protein NusA [Vibrio cholerae RC9]
gi|229353803|gb|EEO18739.1| transcription termination protein NusA [Vibrio cholerae B33]
gi|229357959|gb|EEO22876.1| transcription termination protein NusA [Vibrio cholerae BX 330286]
gi|229371502|gb|ACQ61925.1| transcription termination protein NusA [Vibrio cholerae MJ-1236]
gi|254846581|gb|EET24995.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|255738081|gb|EET93473.1| transcription termination protein NusA [Vibrio cholera CIRS 101]
gi|262021675|gb|EEY40386.1| transcription termination protein NusA [Vibrio cholerae RC27]
gi|262030153|gb|EEY48798.1| transcription termination protein NusA [Vibrio cholerae INDRE 91/1]
gi|297535184|gb|EFH74019.1| N utilization substance protein A [Vibrio cholerae RC385]
gi|297540539|gb|EFH76597.1| transcription elongation factor NusA [Vibrio cholerae MAK 757]
Length = 495
Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats.
Identities = 202/509 (39%), Positives = 317/509 (62%), Gaps = 19/509 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + +AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG FR
Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRRWL 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVE VE+ T +IS + A D S+ +G + D + + F R+ Q+AKQVI+QKVREAER
Sbjct: 64 VVENVEHPTKEISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQKVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186
+ +F D GE+++G VK+V VI+DLGN+ + VI R++ + REN RPGDRV+ +
Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRGLL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
Y V E RG Q+ ++R+ P+ + +LF +EVPEI ++++KA +RDPGSRAK+AV ++D
Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTNDK 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED
Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDEDAH 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ +
Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMKYL 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426
++++ A LLV EGF+ +EE+A V ++E+ ++G DE+ A E++ RA+E L I + ++
Sbjct: 364 DIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTIALAKEE 423
Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486
L +E+L ++ G++ + L G+ T+EDLA VDDL G
Sbjct: 424 SFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIE------------ 471
Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G + + +I+ AR + W ++
Sbjct: 472 -----GLTEQRAGELIMAAR-NICWFGED 494
>gi|153001790|ref|YP_001367471.1| transcription elongation factor NusA [Shewanella baltica OS185]
gi|160876524|ref|YP_001555840.1| transcription elongation factor NusA [Shewanella baltica OS195]
gi|217972314|ref|YP_002357065.1| transcription elongation factor NusA [Shewanella baltica OS223]
gi|304410266|ref|ZP_07391885.1| transcription termination factor NusA [Shewanella baltica OS183]
gi|307302023|ref|ZP_07581781.1| transcription termination factor NusA [Shewanella baltica BA175]
gi|151366408|gb|ABS09408.1| NusA antitermination factor [Shewanella baltica OS185]
gi|160862046|gb|ABX50580.1| NusA antitermination factor [Shewanella baltica OS195]
gi|217497449|gb|ACK45642.1| NusA antitermination factor [Shewanella baltica OS223]
gi|304351675|gb|EFM16074.1| transcription termination factor NusA [Shewanella baltica OS183]
gi|306914061|gb|EFN44482.1| transcription termination factor NusA [Shewanella baltica BA175]
gi|315268718|gb|ADT95571.1| NusA antitermination factor [Shewanella baltica OS678]
Length = 499
Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats.
Identities = 203/515 (39%), Positives = 321/515 (62%), Gaps = 23/515 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L +A+AV+ EK++ R+ + + ++ A + Y D+RV I+ +TG FR
Sbjct: 2 NKEILLVAEAVSNEKAVPREKIFEALEIALATATKKKYEGDIDVRVAIDRKTGGYDTFRR 61
Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
VV++ +EN +I+L+ AR +P I G + D + + F R+ Q+AKQVI+QK
Sbjct: 62 WMVVDDHGEALENPYREITLEAARYENPDIQPGEFIEDDIESVVFDRITTQTAKQVIVQK 121
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180
VREAER + +F+D+ GE+I+G VK+ +V+VDLGN+ DGV+ R++ ISRE+ RPGD
Sbjct: 122 VREAERAQVVEQFQDQEGELITGIVKKATRESVVVDLGNNADGVLFREDLISRESFRPGD 181
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
RV++ +Y VR E RG Q+ LSRT P+ +++LF +EVPEI + ++++ +RDPG+RAK+A
Sbjct: 182 RVRALLYSVRPEARGAQLFLSRTKPEMLIELFRVEVPEIADELIEIMGAARDPGARAKIA 241
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VINA+ PA V ++
Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINAMAPADVASII 301
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DED +++ V + L+ AIGR GQNVRLA+QLTGW ++++T E+ + Q + + +
Sbjct: 302 VDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLTGWVLNVMTVEDMNKKHQAESAKVVE 361
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
F+ +++VDE A +L EGF +EE+A V +SE+ +I+GFDE+ ++ RA+ +
Sbjct: 362 LFVNSLDVDEDFAQVLADEGFTSLEEVAYVPVSELLAIDGFDEDLVEALRERAKAAISTR 421
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ ++ + + SEEL ++ G+D + GI T+EDLA +DDL+ E
Sbjct: 422 ALATEEALDGVEPSEELLALEGVDRHLAYVFASKGIVTLEDLAEQGIDDLIEIEELTEEK 481
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
+I+ AR + W +E
Sbjct: 482 -----------------AGELIMAAR-NICWFGEE 498
>gi|153826517|ref|ZP_01979184.1| N utilization substance protein A [Vibrio cholerae MZO-2]
gi|149739697|gb|EDM53904.1| N utilization substance protein A [Vibrio cholerae MZO-2]
Length = 495
Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats.
Identities = 203/509 (39%), Positives = 317/509 (62%), Gaps = 19/509 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + +AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG FR
Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRRWL 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVE VE+ T +IS + A D S+ +G V D + + F R+ Q+AKQVI+QKVREAER
Sbjct: 64 VVENVEHPTKEISFEAASFDDDSVQLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186
+ +F D GE+++G VK+V VI+DLGN+ + VI R++ + REN RPGDRV+ +
Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRGLL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
Y V E RG Q+ ++R+ P+ + +LF +EVPEI ++++KA +RDPGSRAK+AV ++D
Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTNDK 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED
Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDEDAH 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ +
Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMKYL 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426
++++ A LLV EGF+ +EE+A V ++E+ ++G DE+ A E++ RA+E L I + ++
Sbjct: 364 DIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTIALAKEE 423
Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486
L +E+L ++ G++ + L G+ T+EDLA VDDL G
Sbjct: 424 SFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIE------------ 471
Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G + + +I+ AR + W ++
Sbjct: 472 -----GLTEQRAGELIMAAR-NICWFGED 494
>gi|120556256|ref|YP_960607.1| transcription elongation factor NusA [Marinobacter aquaeolei VT8]
gi|120326105|gb|ABM20420.1| NusA antitermination factor [Marinobacter aquaeolei VT8]
Length = 497
Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats.
Identities = 201/512 (39%), Positives = 324/512 (63%), Gaps = 23/512 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66
E+L + ++V+ EK +++DV+ + ++ AA+ Y +DIRV I+ TG+ FR
Sbjct: 4 EILLVVESVSNEKGVEKDVIFEAIELALATAAKKRYEDEEADIRVAIDRRTGEYETFRRW 63
Query: 67 EVVEEVENYT--CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV+ +++L+ A + D ++ G + + + + FGR+ Q+AKQ+I QKVRE
Sbjct: 64 LVVDNDAVPALGTELTLQEAEEIDTNLKPGDMYEEKVESVAFGRIGAQAAKQIIFQKVRE 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVK 183
AER + ++D++GE++SGTVK+V NVIVDLG + + ++ R+ I RE R GDRV+
Sbjct: 124 AERMKIVDSYRDRIGELVSGTVKKVTRDNVIVDLGGNAEALLPREHLIPRETFRMGDRVR 183
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+ + ++R + RGPQ++LSRT Q +++LF +EVPEI +++++ +RDPGSRAK+AV +
Sbjct: 184 ALLLEIRTDHRGPQLILSRTDSQMLIELFRIEVPEIAEELIEIRGAARDPGSRAKIAVKT 243
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
+D IDPVGACVGMRGSRVQAV EL E++DIV++ + A VINA+ PA V +V+DE
Sbjct: 244 NDRRIDPVGACVGMRGSRVQAVSNELGGERVDIVLYDDNPAQLVINAMAPAEVASIVMDE 303
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
D ++V V ++ L+ AIGR GQNVRLA++LTGWT++++TEEE +++++N + F
Sbjct: 304 DRHTMDVAVAEDNLAQAIGRNGQNVRLATELTGWTLNVMTEEEAGERQEQEYNRLLEHFT 363
Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423
++VDE A +L+ EGF +EE+A V + E+ +IEGFDEET E++ RA++ L +
Sbjct: 364 AHLDVDEEFAGVLIEEGFTSIEEVAYVPMEEMLAIEGFDEETVTELRRRAKDVLLNQALA 423
Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483
++ + ++L ++ G+D + L G++TMEDLA S+D+LL
Sbjct: 424 SEEALEGAEPEDDLLNMDGMDRALAFKLAGMGVRTMEDLAEQSIDELLEIE--------- 474
Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G +++ +I+ AR W E +
Sbjct: 475 --------GMDEERAGQLIMTARAP--WFEDQ 496
>gi|187478885|ref|YP_786909.1| transcription elongation factor NusA [Bordetella avium 197N]
gi|115423471|emb|CAJ50005.1| transcription elongation protein (N utilization substance protein)
[Bordetella avium 197N]
Length = 492
Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats.
Identities = 205/511 (40%), Positives = 310/511 (60%), Gaps = 25/511 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++ R+VV + ++ A + + +DIRV I+ ETG FR
Sbjct: 4 EILLLVDALAREKNVTREVVFGALESALASAMKKRFKEDADIRVSIDRETGGHEGFRRWL 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ Q L A + P +++G + +PL P++FGR+ Q+AKQ I+QK+R+
Sbjct: 64 VVPDEAGLQEPDKQELLSDAHEISPDLEVGDFIEEPLEPVEFGRIGAQAAKQAILQKIRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ +F D+ IISGT+KR++ G+ IV+ G + + R E I +ENLR GDRV++
Sbjct: 124 AEREQVLNDFLDRGETIISGTIKRMDKGDYIVETGKIEARLPRTEMIPKENLRVGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
++ V RG QV+LSRT P+F+ +LF EVPEI G++++KA +RDPG RAK+AV +
Sbjct: 184 FVLRVDHAARGQQVILSRTSPEFIRQLFENEVPEIEQGLLEIKAAARDPGVRAKIAVVAY 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVGMRGSRV AV EL E++DIV+WS D A FVI AL PA V +V+DED
Sbjct: 244 DKRIDPIGTCVGMRGSRVTAVRNELGGEQVDIVLWSEDPAQFVIGALAPANVESIVVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V +E L AIG +GQNVRLAS+LTGW I+I+T EE ++ + FM
Sbjct: 304 KHAMDVVVDEENLPKAIGAKGQNVRLASELTGWQINIMTPEESLNRQENERVSLRATFMD 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR L I
Sbjct: 364 KLDVDEEVADILIDEGFTGLEEIAYVPMQELLEIEAFDEDTINELRVRARNALLTEAIAQ 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
+++ L +++L + G+ + L E + T +DLA + D+L +
Sbjct: 424 EER---LETAQDLLELEGVTPDLAAKLAERNVHTRDDLAELATDELAEIA---------- 470
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G + + +I+ AR W ++E
Sbjct: 471 -------GMSEQEASDLIMRARAH--WFDEE 492
>gi|121587876|ref|ZP_01677633.1| N utilization substance protein A [Vibrio cholerae 2740-80]
gi|153215844|ref|ZP_01950176.1| N utilization substance protein A [Vibrio cholerae 1587]
gi|229512904|ref|ZP_04402371.1| transcription termination protein NusA [Vibrio cholerae TMA 21]
gi|229520933|ref|ZP_04410355.1| transcription termination protein NusA [Vibrio cholerae TM
11079-80]
gi|229530447|ref|ZP_04419835.1| transcription termination protein NusA [Vibrio cholerae 12129(1)]
gi|121547912|gb|EAX57996.1| N utilization substance protein A [Vibrio cholerae 2740-80]
gi|124114561|gb|EAY33381.1| N utilization substance protein A [Vibrio cholerae 1587]
gi|229332220|gb|EEN97708.1| transcription termination protein NusA [Vibrio cholerae 12129(1)]
gi|229342166|gb|EEO07162.1| transcription termination protein NusA [Vibrio cholerae TM
11079-80]
gi|229350153|gb|EEO15106.1| transcription termination protein NusA [Vibrio cholerae TMA 21]
gi|327483444|gb|AEA77851.1| Transcription termination protein NusA [Vibrio cholerae LMA3894-4]
Length = 495
Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats.
Identities = 202/509 (39%), Positives = 317/509 (62%), Gaps = 19/509 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + +AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG FR
Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRRWL 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVE VE+ T +IS + A D S+ +G + D + + F R+ Q+AKQVI+QKVREAER
Sbjct: 64 VVENVEHPTKEISFEAASFDDESVQLGDYIEDQIESVTFDRITTQTAKQVIVQKVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186
+ +F D GE+++G VK+V VI+DLGN+ + VI R++ + REN RPGDRV+ +
Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRGLL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
Y V E RG Q+ ++R+ P+ + +LF +EVPEI ++++KA +RDPGSRAK+AV ++D
Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTNDK 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED
Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDEDAH 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ +
Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMKYL 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426
++++ A LLV EGF+ +EE+A V ++E+ ++G DE+ A E++ RA+E L I + ++
Sbjct: 364 DIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTIALAKEE 423
Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486
L +E+L ++ G++ + L G+ T+EDLA VDDL G
Sbjct: 424 SFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIE------------ 471
Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G + + +I+ AR + W ++
Sbjct: 472 -----GLTEQRAGELIMAAR-NICWFGED 494
>gi|114562167|ref|YP_749680.1| transcription elongation factor NusA [Shewanella frigidimarina
NCIMB 400]
gi|114333460|gb|ABI70842.1| NusA antitermination factor [Shewanella frigidimarina NCIMB 400]
Length = 499
Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats.
Identities = 194/515 (37%), Positives = 318/515 (61%), Gaps = 23/515 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L +A+AV+ EK + R+ + + ++ A + Y ++RV I+ +TG FR
Sbjct: 2 NKEILLVAEAVSNEKGLPREKIFEALEIALATATKKKYEGDIEVRVAIDRKTGHYDTFRR 61
Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
VV++ +EN +I+ + AR +P I +G + D + + F R+ Q+AKQVI+QK
Sbjct: 62 WMVVDDQGEALENPYSEITFEAARYEEPEIQVGEFIEDQIDSVAFDRITTQTAKQVIVQK 121
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180
VREAER + +F ++ GEI++G VK+ +V+VDLGN+ DGV+ +++ ISRE+ RPGD
Sbjct: 122 VREAERAQIVEQFIEREGEIVTGVVKKSTRESVVVDLGNNADGVLFKEDLISRESFRPGD 181
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
RV++ +Y VR E RG Q+ L+R+ + +++LF +EVPEIY+ +++V +RDPG+RAK+A
Sbjct: 182 RVRALLYSVRPEARGAQLFLTRSKAEMLIELFRVEVPEIYDELIEVMGAARDPGARAKIA 241
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VINA+ PA V ++
Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINAMAPADVASII 301
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DED +++ V + L+ AIGR GQNVRLA+QLTGW ++++T E+ + Q + +
Sbjct: 302 VDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLTGWELNVMTVEDMNKKHQAESAKVID 361
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
F+ ++VD+ A +L EGF +EE+A V SE+ ++EGFDE ++ RA+ +
Sbjct: 362 LFVAYLDVDKDFAAVLADEGFTSLEEIAYVPESELLAVEGFDEGIVEALRERAKAAISTR 421
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ ++ + S++L ++ G++ + L G+ T+EDLA +DDL+ E
Sbjct: 422 ALASEEALDGAEPSDDLLALEGLERHLAYVLASKGVVTLEDLAEQGIDDLIDIEE----- 476
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
+++ +I+ AR + W +E
Sbjct: 477 ------------LTEEKAGELIMAAR-NICWFGEE 498
>gi|74316716|ref|YP_314456.1| NusA antitermination factor [Thiobacillus denitrificans ATCC 25259]
gi|74056211|gb|AAZ96651.1| NusA antitermination factor [Thiobacillus denitrificans ATCC 25259]
Length = 492
Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats.
Identities = 211/509 (41%), Positives = 327/509 (64%), Gaps = 23/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L +ADA+A EK++D++VV + ++ A + + SD+RV I+ ETGD FR
Sbjct: 4 EMLMLADALAREKNVDKEVVFEALEQALASATKKRFKEESDVRVAIDRETGDYESFRRWL 63
Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV E+E+ QI L A+D+ P I+IG + +PL ++FGR+ Q+AKQVI+QK+R+A
Sbjct: 64 VVTEAELESEGYQILLVDAQDKIPDIEIGDYIEEPLENVEFGRIGAQAAKQVILQKIRDA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER++ +F + +++G VKR++ GN I++ G +G + RD+ I RENLR GDRV++Y
Sbjct: 124 EREQIISDFLARKEHLVNGVVKRIDRGNAIIESGRVEGFLHRDQMIPRENLRVGDRVRAY 183
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ + R RGPQV+LSRT P+F++KLF +EVPEI G++++KA +RDPG RAK+AV S D
Sbjct: 184 LLRIDRGNRGPQVVLSRTAPEFIMKLFELEVPEIEEGLLEIKAAARDPGLRAKIAVVSHD 243
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
IDP+G C+G+RGSRV +V EL E++DI+ WS D A +VINAL PA V+ +V+DED
Sbjct: 244 PRIDPIGTCIGLRGSRVTSVTNELAGERVDIIHWSADPAQYVINALAPAEVSSIVVDEDT 303
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
++V+V +EQL++AIGR GQNVRLAS+LTGW ++I++ E + + + Q F++
Sbjct: 304 HSMDVVVDEEQLAMAIGRGGQNVRLASELTGWELNIMSREAAEEKQSSESQKTLQLFIEK 363
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425
++VDE +A +LV EGF+ +EE+A V ++E+ IE FDE E++ RAR L I +
Sbjct: 364 LDVDEEVAQILVDEGFSTLEEVAYVPLNEMLEIEAFDEALVNELRNRARNALLTAAIVGE 423
Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485
+++ + +L S+ G+D++ L G+ T EDLA +VD+L +
Sbjct: 424 EQVEAS--AGDLLSLDGMDAETARLLASKGVHTTEDLAELAVDELTEMA----------- 470
Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEK 514
++ + +I+ AR W +
Sbjct: 471 ------AMDAERAKQLIMAARAP--WFAQ 491
>gi|94497164|ref|ZP_01303736.1| NusA antitermination factor [Sphingomonas sp. SKA58]
gi|94423269|gb|EAT08298.1| NusA antitermination factor [Sphingomonas sp. SKA58]
Length = 522
Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats.
Identities = 277/519 (53%), Positives = 380/519 (73%), Gaps = 7/519 (1%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
+SAN+ EL+ IA++VA EK ID+ +V+ M D+IQ+AAR+ YG +DIR +++P++GD+
Sbjct: 5 ISANKAELIAIANSVASEKMIDKAIVIEAMEDAIQRAARARYGAENDIRAKLDPDSGDLR 64
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L+R++EVVE VE+Y Q+ LK + IG + DPLP +D GR+ QSAKQVI QK
Sbjct: 65 LWRVVEVVETVEDYFKQVDLKQGQKLKKDAVIGDFIVDPLPAIDLGRIDAQSAKQVIFQK 124
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VR+AER+RQY E+KD+VGEII+G VK VE+G+V+V+LG ++GVIRRD+ I RE +R GDR
Sbjct: 125 VRDAERERQYEEYKDRVGEIITGVVKSVEFGHVVVNLGRAEGVIRRDQQIPREVVRVGDR 184
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++S + +VRRE RGPQ+ LSR HP+FM KLF EVPEIY+G++ + A +RDPGSRAK+ V
Sbjct: 185 IRSVVLNVRRENRGPQIFLSRAHPEFMKKLFAQEVPEIYDGVITIMAAARDPGSRAKIGV 244
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S DSSIDPVGACVGM+GSRVQAVV E++ EKIDI+ WS D+ATFV+NAL+PA V +VV+
Sbjct: 245 ISRDSSIDPVGACVGMKGSRVQAVVQEMQGEKIDIIPWSEDTATFVVNALQPAQVARVVI 304
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DE+ RIEV+VP +QLSLAIGRRGQNVRLASQLTG IDI+TE + S RQK+F R++
Sbjct: 305 DEEEERIEVVVPDDQLSLAIGRRGQNVRLASQLTGKAIDIMTEADASEKRQKEFVARSEM 364
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F ++VDE ++ LLVAEGF ++EE+A V + E+A IEGFDE+ A E+Q RA+E L+ +
Sbjct: 365 FQNELDVDETLSQLLVAEGFGELEEVAYVTVEELAGIEGFDEDLAAELQSRAQEALDRRE 424
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL-----GWSEN 476
+++ + LGV + L +P + + V LG+ GIKT++DLA + D+L+
Sbjct: 425 AAAREERQALGVDDALADMPHLTEAMLVTLGKAGIKTLDDLADLATDELIAKKRVDQRRR 484
Query: 477 KGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
K E G LS+ G ++Q +I+ AR W E+E
Sbjct: 485 KSETTEDKGGILSAYGLNEEQGNEIIMAARAH--WFEEE 521
>gi|91792366|ref|YP_562017.1| transcription elongation factor NusA [Shewanella denitrificans
OS217]
gi|91714368|gb|ABE54294.1| NusA antitermination factor [Shewanella denitrificans OS217]
Length = 499
Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats.
Identities = 197/515 (38%), Positives = 319/515 (61%), Gaps = 23/515 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L +A+AV+ EK++ R+ + + ++ A + Y ++RV I+ +TG FR
Sbjct: 2 NKEILLVAEAVSNEKAVPREKIFEALEIALATATKKKYEGDIEVRVAIDRKTGHYDTFRR 61
Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
VV++ +EN +I+L+ AR +P I+ G + D + + F R+ Q+AKQVI+QK
Sbjct: 62 WMVVDDQGEALENPYSEITLEAARYEEPGIEPGQYIEDQIDSVVFDRITTQTAKQVIVQK 121
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180
VREAER + +F +K GEI++G VK+ NV+VDLGN+ DGV+ +++ ISRE+ RPGD
Sbjct: 122 VREAERAQVVEQFIEKEGEIVTGIVKKSSRENVVVDLGNNADGVLFKEDLISRESFRPGD 181
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
RV++ +Y VR E RG Q+ L+R+ P+ +++LF +EVPEIY+ ++++ +RDPG+RAK+A
Sbjct: 182 RVRALLYSVRPEARGAQLFLTRSKPEMLIELFRVEVPEIYDEMIEIMGAARDPGARAKIA 241
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VINA+ PA V ++
Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDENPAQYVINAMAPADVASII 301
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DED +++ V + L+ AIGR GQNVRLA+QLTGW ++++T E+ + Q + +
Sbjct: 302 VDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLTGWELNVMTVEDMNKKHQAESAKVID 361
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
F+ A+ VD A +L EGF +EE+A V +E+ +I+GFD + ++ RA+ +
Sbjct: 362 LFVSALEVDTDFATVLAEEGFTSLEEIAYVPEAELLAIDGFDSDIVETLRERAKAAISTR 421
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ ++ + SE+L ++ G++ + L G+ T+EDLA +DDL+ E
Sbjct: 422 ALATEEALDGAEPSEDLLALEGLERHLAYVLASKGVVTLEDLAEQGIDDLIEIEE----- 476
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
+ + +I+ AR + W +E
Sbjct: 477 ------------LTEAKAGELIMAAR-NICWFGEE 498
>gi|226940848|ref|YP_002795922.1| transcription elongation factor NusA [Laribacter hongkongensis
HLHK9]
gi|226715775|gb|ACO74913.1| NusA [Laribacter hongkongensis HLHK9]
Length = 497
Score = 471 bits (1213), Expect = e-131, Method: Composition-based stats.
Identities = 208/514 (40%), Positives = 322/514 (62%), Gaps = 28/514 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGT-----MSDIRVEINPETGDISL 62
E+L + DA+A EK++ +D+V + ++ A + D+RV I+ TG
Sbjct: 4 EILLLVDALAREKNVSKDIVFGALELALASATKKKISQDTNQDEIDVRVSIDRHTGAYET 63
Query: 63 FRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
FR VVE+ E + QI++ A + + +G + +P+ ++FGR+ Q+AKQVI+Q
Sbjct: 64 FRRWTVVEDNDHEFPSRQIAMSDAAEHEVEAVVGTIKEEPVEAIEFGRIGAQTAKQVILQ 123
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
K+R+AER++ +F D+ +++SGT+KR+E GNVI+DLG + ++ R++ I +ENLR GD
Sbjct: 124 KIRDAEREQVLNDFLDRNEKLVSGTIKRIERGNVIIDLGKLEALLPREQQIPKENLRVGD 183
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
RVK+Y+ V R RGPQ++LSR PQF+ +LF EVPEI +G++++K +RD GSRAK+A
Sbjct: 184 RVKAYLLRVDRMGRGPQIILSRIAPQFITELFRQEVPEIDDGMLEIKGCARDAGSRAKIA 243
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V ++D +DP G C+GMRGSRVQAV EL E++DIV+W+ D +VINAL PA V +++
Sbjct: 244 VKANDPRLDPQGTCIGMRGSRVQAVTNELGGERVDIVLWAGDIVQYVINALSPAEVQRIL 303
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DED ++V+V ++QL+LAIGR GQNVRLAS+LTGW ++I+T E + + Q
Sbjct: 304 IDEDKHAMDVVVDEDQLALAIGRGGQNVRLASELTGWVLNIMTVAEAEEKHEAEDAAMKQ 363
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
FM A++VD+ +A +L +EGF +EE+A V + E+ I FD ET E++ RARE L
Sbjct: 364 LFMDALDVDQDVADVLASEGFTTLEEIAYVPLEEMLQISYFDAETVNELRSRAREALLTQ 423
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
I ++K+ V + L +PG+ + V L ENG+ T +DLA +VD+L +
Sbjct: 424 AIASEEKMN--SVEDALRELPGMTQDVLVKLAENGVTTRDDLADLAVDELADMT------ 475
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
+D+ ++I+ AR W E+
Sbjct: 476 -----------NITEDEARALIMKAREH--WFEQ 496
>gi|119470821|ref|ZP_01613432.1| transcription elongation factor NusA [Alteromonadales bacterium
TW-7]
gi|119446048|gb|EAW27327.1| transcription elongation factor NusA [Alteromonadales bacterium
TW-7]
Length = 499
Score = 471 bits (1213), Expect = e-131, Method: Composition-based stats.
Identities = 191/514 (37%), Positives = 320/514 (62%), Gaps = 24/514 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L +A+AV+ EK++ ++ + + ++ A + + ++RV I+ +TGD FR +
Sbjct: 4 EILLVAEAVSNEKAVPKEKIFEALEFALATATKKKHDGEIEVRVSIDRKTGDYDTFRRWQ 63
Query: 68 VVE-----EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+ E +EN +I+L+ A+ +P + +G V + + + F R+ Q AKQVI+QKV
Sbjct: 64 IAEVLEDGSLENPYSEITLEAAQVEEPDLQLGDFVEEQIDSIKFDRITTQMAKQVIVQKV 123
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
REAER +KD+VGE+++G VK+ ++++DLGN+ + VI RD+ + REN RPGDR
Sbjct: 124 REAERALVVDAYKDQVGELVTGVVKKATRDSIVLDLGNNAEAVIYRDDMLPRENFRPGDR 183
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++ +Y+V+ E RG Q+ ++R+ P+ +++LF +EVPEI +++++A +RDPGSRAK+AV
Sbjct: 184 IRGLLYEVKPEARGAQLFVTRSKPEMLMELFRIEVPEIGEEMIELRAAARDPGSRAKIAV 243
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+D IDP+GACVGMRG+RVQAV +EL E++DIV++ + A FVINA+ PA V +VL
Sbjct: 244 KSNDKRIDPIGACVGMRGARVQAVSSELGGERVDIVLYDDNPAQFVINAMSPAEVASIVL 303
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED +++ V + L+ AIGR GQNVRLASQLTGW ++++T +E + + ++
Sbjct: 304 DEDTHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVDEMRTKNEAESDKLLNL 363
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F + +++D+ A LL+ EGF+ +EE+A V SE I+G DEET ++ RA++ L
Sbjct: 364 FTENLDIDDEFATLLINEGFSTLEEVAYVPASEFLEIDGLDEETVDVLRSRAKDALTTKA 423
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ ++ + +E+L ++ G++ + + G+ T+EDLA +D+L+ +E
Sbjct: 424 LKTEESLEGAEPAEDLLALEGLERHLAFVMASKGVVTLEDLAEQGIDELVDITE------ 477
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
+Q +I+ AR + W E
Sbjct: 478 -----------LSSEQAGELIMAAR-NICWFADE 499
>gi|157962879|ref|YP_001502913.1| transcription elongation factor NusA [Shewanella pealeana ATCC
700345]
gi|157847879|gb|ABV88378.1| NusA antitermination factor [Shewanella pealeana ATCC 700345]
Length = 499
Score = 471 bits (1213), Expect = e-130, Method: Composition-based stats.
Identities = 200/515 (38%), Positives = 316/515 (61%), Gaps = 23/515 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L +A+AV+ EK + R+ + + ++ A + Y ++RV I+ +TG FR
Sbjct: 2 NKEILLVAEAVSNEKGVPREKIFEALEIALATATKKKYEGDIEVRVAIDRKTGAYETFRR 61
Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
VVE+ +EN +I+L+ A+ DP I++GG + D + + F R+ Q+AKQVI+QK
Sbjct: 62 WMVVEDAGVPLENPFREITLEAAKYDDPEIELGGYIEDEIESVAFDRITTQTAKQVIVQK 121
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGD 180
VREAER + +F+D+ GE+I G VK+ +V+VDLG N+DGV+ +++ ISRE+ RPGD
Sbjct: 122 VREAERAQIVDQFRDREGELIVGVVKKSNRESVVVDLGTNADGVLFKEDLISRESFRPGD 181
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
RV++ +Y VR E RG Q+ L+RT P +++LF +EVPEI + ++++ +RDPGSRAK+A
Sbjct: 182 RVRALLYSVRPEARGAQLFLTRTKPDMLIELFRVEVPEIQDEMIEIMGAARDPGSRAKIA 241
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VIN + PA V ++
Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINCMAPADVASII 301
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DED +++ V + L+ AIGR GQN+RLA+QL+GW ++++T + Q + +
Sbjct: 302 VDEDNHSMDIAVEADSLAQAIGRNGQNIRLATQLSGWELNVMTVADMKAKHQAESAKVVN 361
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
F+QA++VDE A LL EGF +EE+A V SE+ I+GFDE+ ++ RA+ +
Sbjct: 362 LFIQALDVDEEFAQLLSDEGFTSLEEIAYVPASELLEIDGFDEDIVESLRERAKAAISTR 421
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ ++ + SE+L ++ G+D + + G+ T+EDLA +DDL+ E
Sbjct: 422 ALATEEALDGAEPSEDLLALEGLDRHLAFVMASKGVITLEDLAEQGIDDLIEIEELTEEK 481
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
+I+ AR + W +E
Sbjct: 482 -----------------AGELIMAAR-NICWFGEE 498
>gi|113969369|ref|YP_733162.1| transcription elongation factor NusA [Shewanella sp. MR-4]
gi|114046596|ref|YP_737146.1| transcription elongation factor NusA [Shewanella sp. MR-7]
gi|113884053|gb|ABI38105.1| NusA antitermination factor [Shewanella sp. MR-4]
gi|113888038|gb|ABI42089.1| NusA antitermination factor [Shewanella sp. MR-7]
Length = 499
Score = 471 bits (1213), Expect = e-130, Method: Composition-based stats.
Identities = 205/515 (39%), Positives = 322/515 (62%), Gaps = 23/515 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L +A+AV+ EK++ R+ + + ++ A + Y D+RV I+ +TG FR
Sbjct: 2 NKEILLVAEAVSNEKAVPREKIFEALETALATATKKKYEGDIDVRVAIDRKTGAYETFRR 61
Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
V+++ +EN +I+L+ AR +P I G + D + + F R+ Q+AKQVI+QK
Sbjct: 62 WMVIDDNGVALENPYREITLEAARFENPEIQPGDFIEDEIESVAFDRITTQTAKQVIVQK 121
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180
VREAER + +F+DK GE+I+G VK+ +V+VDLGN+ DGV+ R++ ISRE+ RPGD
Sbjct: 122 VREAERAQVVEQFQDKEGELITGVVKKATRESVVVDLGNNADGVLFREDLISRESFRPGD 181
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
RV++ +Y VR E RG Q+ L+RT P +++LF +EVPEI + +++V +RDPG+RAK+A
Sbjct: 182 RVRALLYSVRPEARGAQLFLTRTKPDMLIELFRVEVPEIADELIEVMGAARDPGARAKIA 241
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VINA+ PA V ++
Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINAMAPADVASII 301
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DED +++ V E L+ AIGR GQNVRLA+QLTGW ++++T E+ + Q + +
Sbjct: 302 VDEDNHSMDIAVEAESLAQAIGRNGQNVRLATQLTGWELNVMTVEDMNKKHQAESAKVKS 361
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
FM++++VDE A +L EGF +EE+A V +SE+ +I+GFDE+ ++ RA+ +
Sbjct: 362 LFMKSLDVDEDFAQVLADEGFTSLEEVAYVPVSELLAIDGFDEDIVEALRERAKAAISTR 421
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ ++ + + SEEL ++ G++ + L GI T+EDLA +DDL+ E
Sbjct: 422 ALASEEALDGVEPSEELLALEGVERHLAYVLASKGIVTLEDLAEQGIDDLIEIEELTEEK 481
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
++I+ AR + W +E
Sbjct: 482 -----------------AGALIMAAR-NICWFGEE 498
>gi|261253851|ref|ZP_05946424.1| transcription termination protein NusA [Vibrio orientalis CIP
102891]
gi|260937242|gb|EEX93231.1| transcription termination protein NusA [Vibrio orientalis CIP
102891]
Length = 495
Score = 471 bits (1213), Expect = e-130, Method: Composition-based stats.
Identities = 200/509 (39%), Positives = 321/509 (63%), Gaps = 19/509 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + +AV+ EK++ R+ + + ++ + + + D+RVEI+ +TG+ FR E
Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALEIALATSTKKKHEMEIDVRVEIDRKTGEFETFRRWE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVE VE+ T +ISL+ A+ DP +++G V D + + F R+ Q+AKQVI+QKVREAER
Sbjct: 64 VVEVVESPTKEISLEAAQYEDPELNVGDFVEDDIESVTFDRITTQTAKQVIVQKVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186
+ +F D GE+++G VK+V V++DLGN+ + VI RD+ + REN RPGDRV+ +
Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRETVVLDLGNNAEAVILRDDQLPRENFRPGDRVRGLL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
Y V E RG Q+ ++R+ P+ + +LF +EVPEI I+++K +RDPGSRAK+AV ++D
Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIAEEIIELKGAARDPGSRAKIAVKTNDK 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED
Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDTN 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V + L+ AIGR GQNVRLASQLTGW ++++T E+ ++ + FM+ +
Sbjct: 304 TMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVEDLHKKHAEESQAAIESFMKHL 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426
+++E A LLV EGF+ +EE+A V ++E+ ++G DE+ E++ RA+ L + + ++
Sbjct: 364 DIEEDFAQLLVEEGFSTLEEVAYVPVNELLEVDGLDEDLVEELRSRAKNALTTLALAQEE 423
Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486
+ +E+L + G++ ++ L G+ T+EDLA +DD+ G
Sbjct: 424 SFEGVEPAEDLLGLEGLEREMAFKLAAKGVATLEDLADQGIDDIEGIE------------ 471
Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G +++ +I+ AR + W ++
Sbjct: 472 -----GLTEERAGELIMAAR-NICWFGED 494
>gi|312885214|ref|ZP_07744893.1| transcription elongation factor NusA [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309367154|gb|EFP94727.1| transcription elongation factor NusA [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 495
Score = 471 bits (1213), Expect = e-130, Method: Composition-based stats.
Identities = 198/510 (38%), Positives = 318/510 (62%), Gaps = 19/510 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + +AV+ EK++ R+ + + ++ + + + D+RVEI+ +TG+ FR
Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALEIALATSTKKKHEIEIDVRVEIDRKTGEFDTFRRWL 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEVEN T +ISL+ A+ D I +G V D + + F R+ Q+AKQVI+QKVREAER
Sbjct: 64 VVEEVENPTKEISLEAAQYEDAEIQLGDFVEDDIESVTFDRITTQTAKQVIVQKVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186
+ +F D GE+++G VK+V +++DLGN+ + VI RD+ + REN RPGDRV+ +
Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRDTIVLDLGNNAEAVILRDDQLPRENFRPGDRVRGLL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
Y V E RG Q+ ++R+ P + +LF +EVPEI I+++K +RDPGSRAK+AV ++D
Sbjct: 184 YKVAPEARGFQLFITRSKPDMLAELFRVEVPEIAEEIIELKGAARDPGSRAKIAVKTNDK 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED
Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDTN 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V + L+ AIGR GQNVRLASQLTGW ++++T ++ ++ + FM+ +
Sbjct: 304 TMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVDDLHKKHAEESQAAIENFMKHL 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426
+++E A LLV EGF+ +EE+A V ++E+ ++G DEE E++ RA+ L + + ++
Sbjct: 364 DIEEDFAQLLVEEGFSTLEEVAYVPVNELLEVDGLDEELVEELRNRAKNALTTLALAQEE 423
Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486
+ +++L + G++ ++ L G+ T+EDLA +DD+
Sbjct: 424 SFEGVEPADDLLGLEGLEREMAFKLAARGVATLEDLAEQGIDDIESIE------------ 471
Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
G +++ +I+ AR + W +++
Sbjct: 472 -----GLTEERAGELIMAAR-NICWFGEDE 495
>gi|117919478|ref|YP_868670.1| transcription elongation factor NusA [Shewanella sp. ANA-3]
gi|117611810|gb|ABK47264.1| NusA antitermination factor [Shewanella sp. ANA-3]
Length = 499
Score = 471 bits (1213), Expect = e-130, Method: Composition-based stats.
Identities = 205/515 (39%), Positives = 321/515 (62%), Gaps = 23/515 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L +A+AV+ EK++ R+ + + ++ A + Y D+RV I+ +TG FR
Sbjct: 2 NKEILLVAEAVSNEKAVPREKIFEALETALATATKKKYEGDIDVRVSIDRKTGAYETFRR 61
Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
V+++ +EN +I+L+ AR +P I G + D + + F R+ Q+AKQVI+QK
Sbjct: 62 WMVIDDNGVALENPYREITLEAARYENPEIQPGDYIEDQIESVAFDRITTQTAKQVIVQK 121
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180
VREAER + +F+DK GE+I+G VK+ +V+VDLGN+ DGV+ R++ ISRE+ RPGD
Sbjct: 122 VREAERAQVVEQFQDKEGELITGVVKKATRESVVVDLGNNADGVLFREDLISRESFRPGD 181
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
RV++ +Y VR E RG Q+ L+RT P +++LF +EVPEI + +++V +RDPG+RAK+A
Sbjct: 182 RVRALLYSVRPEARGAQLFLTRTKPDMLIELFRVEVPEIADELIEVMGAARDPGARAKIA 241
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VINA+ PA V ++
Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINAMAPADVASII 301
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DED +++ V E L+ AIGR GQNVRLA+QLTGW ++++T E+ + Q + +
Sbjct: 302 VDEDNHSMDIAVEAESLAQAIGRNGQNVRLATQLTGWELNVMTVEDMNKKHQAESAKVKS 361
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
F+ A++VDE A +L EGF +EE+A V +SE+ +I+GFDE+ ++ RA+ +
Sbjct: 362 LFINALDVDEDFAQVLADEGFTSLEEVAYVPVSELLAIDGFDEDIVEALRERAKAAISTR 421
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ ++ + + SEEL ++ G++ + L GI T+EDLA +DDL+ E
Sbjct: 422 ALATEEALDGVEPSEELLALEGVERHLAYVLASKGIVTLEDLAEQGIDDLIEIEELTEEK 481
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
++I+ AR + W +E
Sbjct: 482 -----------------AGALIMAAR-NICWFGEE 498
>gi|119477402|ref|ZP_01617593.1| N utilization substance protein A [marine gamma proteobacterium
HTCC2143]
gi|119449328|gb|EAW30567.1| N utilization substance protein A [marine gamma proteobacterium
HTCC2143]
Length = 502
Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats.
Identities = 216/519 (41%), Positives = 329/519 (63%), Gaps = 22/519 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L +A+AV+ EK + RD++ + ++ A + Y +DI V I+ E+G FR
Sbjct: 2 NKEILLVAEAVSNEKGVPRDIIFEAIEQALATATKKRYDEDADIHVIIDRESGGYETFRR 61
Query: 66 LEVVEEVEN--YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
EVV + E Q + + A ++D S+ IG V + + + FGR+A Q+AKQVI+QKVR
Sbjct: 62 WEVVSDDEMALLGTQFTTEEAAEKDTSLQIGDVYEEKIENVGFGRIAAQTAKQVIVQKVR 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182
EAER + E++ +VGE+ISGTVK+V N+IVDLGN+ +G + R+E + RE R GDRV
Sbjct: 122 EAERAQVVEEYEGRVGELISGTVKKVTRDNIIVDLGNNAEGSLPREELVGREVFRMGDRV 181
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
++ + DVR E RGPQ+ LSR + +++LF +EVPEI ++ ++A +RDPGSRAK+AV
Sbjct: 182 RAILQDVRPEARGPQLFLSRACSEMLIELFKVEVPEISEEVIDIRAAARDPGSRAKIAVK 241
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
++D IDP+GACVGMRGSRVQAV EL +E++DI++W + A VINA+ PA V +V+D
Sbjct: 242 TNDGRIDPIGACVGMRGSRVQAVSGELGNERVDIILWDDNPAQLVINAMAPAEVESIVVD 301
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
ED ++V V + L+ AIGR GQNVRLAS LTGWTI++++ E+ S +K+ F
Sbjct: 302 EDSRSMDVAVAADNLAQAIGRSGQNVRLASDLTGWTINVMSLEDASEKHEKESGAVIAEF 361
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
M++++VDE IA +LV EGF +EE+A V + E+A IEGFDE+ A E++ RA++ L I
Sbjct: 362 MESLDVDEDIAEVLVDEGFTSLEEVAYVPLEELAGIEGFDEDIAEELRARAKDALLTQAI 421
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482
++++ ++ +E+L ++ G++ + L GI TMEDLA +V+DL+
Sbjct: 422 ASEEQLGDVEPAEDLLTMDGMERHLAFVLASKGIITMEDLAEQAVEDLMDIE-------- 473
Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEE 521
G + Q +I+ AR W + + + +
Sbjct: 474 ---------GLEEKQAGELIMTARAP--WFAEAEETENQ 501
>gi|323495468|ref|ZP_08100543.1| transcription elongation factor NusA [Vibrio sinaloensis DSM 21326]
gi|323319465|gb|EGA72401.1| transcription elongation factor NusA [Vibrio sinaloensis DSM 21326]
Length = 495
Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats.
Identities = 196/509 (38%), Positives = 318/509 (62%), Gaps = 19/509 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + +AV+ EK++ R+ + + ++ + + + D+RVEI+ +TG+ FR
Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALEIALATSTKKKHEIEIDVRVEIDRKTGEFETFRRWL 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
+VE+VEN T +ISL+ A+ + +++G V D + + F R+ Q+AKQVI+QKVREAER
Sbjct: 64 IVEDVENPTKEISLEAAKFENEELELGDYVEDDIESVTFDRITTQTAKQVIVQKVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186
+ +F D GE+++G VK+V V++DLGN+ + VI RD+ + REN RPGDRV+ +
Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRDTVVLDLGNNAEAVILRDDQLPRENFRPGDRVRGLL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
Y V E RG Q+ ++R+ P+ + +LF +EVPEI I+++K +RDPGSRAK+AV ++D
Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIAEEIIELKGAARDPGSRAKIAVKTNDK 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED
Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDAH 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V + L+ AIGR GQNVRLASQLTGW ++++T + ++ + FM+ +
Sbjct: 304 AMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHAEESQAAIEGFMKHL 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426
+++E A LLV EGF+ +EE+A V ++E+ ++G DE+ E++ RA+ L + + ++
Sbjct: 364 DIEEDFAQLLVEEGFSTLEEVAYVPVNELLEVDGLDEDLVEELRSRAKNALTTLALAQEE 423
Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486
+ +E+L + G++ ++ L G+ T+EDLA +DD+
Sbjct: 424 SFEGVEPAEDLLGLEGLEREMAFKLAAKGVATLEDLADQGIDDIEDIE------------ 471
Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G +++ +I+ AR + W +E
Sbjct: 472 -----GLTEERAGELIMAAR-NICWFGEE 494
>gi|261212247|ref|ZP_05926533.1| transcription termination protein NusA [Vibrio sp. RC341]
gi|260838855|gb|EEX65506.1| transcription termination protein NusA [Vibrio sp. RC341]
Length = 495
Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats.
Identities = 202/509 (39%), Positives = 318/509 (62%), Gaps = 19/509 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + +AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG FR
Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRRWL 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVE VE+ T +IS + A D S+ +G + D + + F R+ Q+AKQVI+QKVREAER
Sbjct: 64 VVENVEHPTKEISFEAANFDDESVQMGDYIEDQIESVTFDRITTQTAKQVIVQKVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186
+ +F D GE+++G VK+V VI+DLGN+ + VI R++ + REN RPGDRV+ +
Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRGLL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
Y V E RG Q+ ++R+ P+ + +LF +EVPEI ++++KA +RDPGSRAK+AV ++D
Sbjct: 184 YKVAPEARGFQLFITRSKPEMLTELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTNDK 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED
Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDEDTH 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ +
Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMKYL 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426
++++ A LLV EGF+ +EE+A V ++E+ ++G DE+ A E++ RA+E L I + ++
Sbjct: 364 DIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLAEELRSRAKEALTTIALAKEE 423
Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486
L +E+L ++ G++ ++ L G+ T+EDLA VDDL G
Sbjct: 424 SFEGLEPAEDLLALAGLEREMAFKLAAKGVATLEDLADQGVDDLEGIE------------ 471
Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G + + +I+ AR + W ++
Sbjct: 472 -----GLTEQRAGELIMAAR-NICWFGED 494
>gi|149189795|ref|ZP_01868076.1| transcription elongation factor NusA [Vibrio shilonii AK1]
gi|148836444|gb|EDL53400.1| transcription elongation factor NusA [Vibrio shilonii AK1]
Length = 495
Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats.
Identities = 196/510 (38%), Positives = 319/510 (62%), Gaps = 19/510 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + +AV+ EK++ R+ + + ++ + + + D+RV I+ +TG+ FR
Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALEIALATSTKKKHEIEIDVRVAIDRKTGEFETFRRWM 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VEEVE T +IS++ A+ D SI +G V + + + F R+ Q+AKQVI+QKVREAER
Sbjct: 64 AVEEVEFPTKEISIEAAQFDDESIQVGDFVEEEIDSVTFDRITTQTAKQVIVQKVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186
+ +F D G++++G VK+V +I+DLGN+ + VI RD+ + REN RPGDRV+ +
Sbjct: 124 AQIVEQFIDNEGDLVTGVVKKVNRDTIILDLGNNAEAVILRDDQLPRENFRPGDRVRGLL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
Y V E RG Q+ ++R+ P+ + +LF +EVPEI ++++K +RDPGSRAK+AV ++D
Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIAEELIELKGAARDPGSRAKIAVKTNDR 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED
Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDAH 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ +
Sbjct: 304 SMDIAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVADLQKKHQEEAIASIENFMKHL 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426
++++ A +LV EGF+ +EE+A V ++E+ I+G +EE E++ RA++ L + + ++
Sbjct: 364 DIEQDFAEMLVEEGFSTLEEVAYVPVNELLEIDGLNEELVEELRSRAKDALTTLALAQEE 423
Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486
+ +E+L ++ G++ ++ L G+ T+EDLA VD+L G
Sbjct: 424 SFEGVEPAEDLLALEGLEREMAFKLAAKGVATLEDLADQGVDELEGIE------------ 471
Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
G +++ +I+ AR + W E+
Sbjct: 472 -----GLTEERAGELIMAAR-NICWFGDEE 495
>gi|89072574|ref|ZP_01159146.1| transcription elongation factor NusA [Photobacterium sp. SKA34]
gi|89051678|gb|EAR57131.1| transcription elongation factor NusA [Photobacterium sp. SKA34]
Length = 495
Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats.
Identities = 200/511 (39%), Positives = 314/511 (61%), Gaps = 19/511 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + + ++RV I+ +TG+ FR
Sbjct: 2 NKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKHEAEIEVRVAIDRKTGEFETFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+ VEEV T +I+L+ A+ DP+I G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WKAVEEVTQPTLEITLEAAQFEDPTIVAGDYVEDDIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184
ER + +F D GE+I+G VK+V VI+DLG N++ VI+RD+ + REN RPGDRV+
Sbjct: 122 ERAQIVEQFIDNEGELITGIVKKVNRDAVIIDLGSNAEAVIQRDDQLPRENFRPGDRVRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y V E RG Q+ ++R+ P+ + +LF +EVPE+ ++++ +RDPGSRAK+AV ++
Sbjct: 182 LLYKVAPEARGFQLFMTRSKPEMLCELFRIEVPEMGEELIELMGAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A +VINA+ PA V +++DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELAGERIDIVLWDENPAQYVINAMAPAEVDSIIVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V K+ L+ AIGR GQNVRLASQLTGW ++++T E+ Q++ E + F +
Sbjct: 302 NHTMDIAVQKDNLAQAIGRSGQNVRLASQLTGWELNVMTVEDLQKKHQEEAKESIEVFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A +LV EGF +EE+A V +SE+ ++G DEET +++ RA+ L + +
Sbjct: 362 HLDIDEDFATVLVEEGFTTLEEIAYVPLSELMDVDGLDEETIDQLRSRAKAALTTLALAK 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + +E+L + G++ ++ GI T+EDLA DDL
Sbjct: 422 EETLDGAEPAEDLLGLEGLERELAFKFAAKGICTLEDLADQGTDDLTDIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G + +I+ AR + W E
Sbjct: 472 -------GVDDAKAGELIMAAR-NICWFSDE 494
>gi|258624683|ref|ZP_05719617.1| N utilization substance protein A [Vibrio mimicus VM603]
gi|258582970|gb|EEW07785.1| N utilization substance protein A [Vibrio mimicus VM603]
Length = 495
Score = 471 bits (1211), Expect = e-130, Method: Composition-based stats.
Identities = 203/509 (39%), Positives = 319/509 (62%), Gaps = 19/509 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + +AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG FR
Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRRWL 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVE VE+ T +IS + A D S+ +G + D + + F R+ Q+AKQVI+QKVREAER
Sbjct: 64 VVENVEHPTKEISFEAASFDDESVQMGDYIEDQIESVTFDRITTQTAKQVIVQKVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186
+ +F D GE+++G VK+V VI+DLGN+ + VI R++ + REN RPGDRV+ +
Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRGLL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
Y V E RG Q+ ++R+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+AV ++D
Sbjct: 184 YKVAPEARGFQLFITRSKPEMLVELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTNDK 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED
Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDEDTH 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ +
Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMKYL 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426
++++ A LLV EGF+ +EE+A V ++E+ ++G DE+ A E++ RA+E L I + ++
Sbjct: 364 DIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLAEELRSRAKEALTTIALAKEE 423
Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486
L +E+L ++ G++ ++ L G+ T+EDLA VDDL G
Sbjct: 424 SFEGLEPAEDLLALAGLEREMAFKLAAKGVATLEDLADQGVDDLEGIE------------ 471
Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G + + +I+ AR + W ++
Sbjct: 472 -----GLTEQRAGELIMAAR-NICWFGED 494
>gi|262163944|ref|ZP_06031683.1| transcription termination protein NusA [Vibrio mimicus VM223]
gi|262027472|gb|EEY46138.1| transcription termination protein NusA [Vibrio mimicus VM223]
Length = 495
Score = 471 bits (1211), Expect = e-130, Method: Composition-based stats.
Identities = 201/509 (39%), Positives = 317/509 (62%), Gaps = 19/509 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + +AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG FR
Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRRWL 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVE VE+ T +IS + A D S+ +G + D + + F R+ Q+AKQVI+QKVREAER
Sbjct: 64 VVENVEHPTKEISFEAASFDDESVQMGDYIEDQIESVTFDRITTQTAKQVIVQKVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186
+ +F D GE+++G VK+V VI+DLGN+ + VI R++ + REN RPGDRV+ +
Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRGLL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
+ V E RG Q+ ++R+ P+ + +LF +EVPEI ++++KA +RDPGSRAK+AV ++D
Sbjct: 184 FKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTNDK 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED
Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDEDTH 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ +
Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMKYL 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426
+++ A LLV EGF+ +EE+A V ++E+ ++G DE+ A E++ RA+E L I + ++
Sbjct: 364 DIEPDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLAEELRSRAKEALTTIALAKEE 423
Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486
L +E+L ++ G++ ++ L G+ T+EDLA VDDL G
Sbjct: 424 SFEGLEPAEDLLALAGLEREMAFKLAAKGVATLEDLADQGVDDLEGIE------------ 471
Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G + + +I+ AR + W ++
Sbjct: 472 -----GLTEQRAGELIMAAR-NICWFGED 494
>gi|126175440|ref|YP_001051589.1| transcription elongation factor NusA [Shewanella baltica OS155]
gi|125998645|gb|ABN62720.1| NusA antitermination factor [Shewanella baltica OS155]
Length = 499
Score = 471 bits (1211), Expect = e-130, Method: Composition-based stats.
Identities = 203/515 (39%), Positives = 322/515 (62%), Gaps = 23/515 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L +A+AV+ EK++ R+ + + ++ A + Y D+RV I+ +TG FR
Sbjct: 2 NKEILLVAEAVSNEKAVPREKIFEALEIALATATKKKYEGDIDVRVAIDRKTGGYDTFRR 61
Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
VV++ +EN +I+L+ AR +P I G + D + + F R+ Q+AKQVI+QK
Sbjct: 62 WMVVDDHGEALENPYREITLEAARYENPDIQPGEFIEDDIESVVFDRITTQTAKQVIVQK 121
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180
VREAER + +F+D+ GE+I+G VK+ +V+VDLGN+ DGV+ R++ ISRE+ RPGD
Sbjct: 122 VREAERAQVVEQFQDQEGELITGIVKKATRESVVVDLGNNADGVLFREDLISRESFRPGD 181
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
RV++ +Y VR E RG Q+ LSRT P+ +++LF +EVPEI + ++++ +RDPG+RAK+A
Sbjct: 182 RVRALLYSVRPEARGAQLFLSRTKPEMLIELFRVEVPEIADELIEIMGAARDPGARAKIA 241
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VINA+ PA V ++
Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINAMAPADVASII 301
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DED +++ V + L+ AIGR GQNVRLA+QLTGW ++++T E+ + Q + + +
Sbjct: 302 VDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLTGWVLNVMTVEDMNKKHQAESAKVVE 361
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
F+ +++VDE A +L EGF +EE+A V +SE+ +I+GFDE+ ++ RA+ +
Sbjct: 362 LFVNSLDVDEDFAQVLADEGFTSLEEVAYVPVSELLAIDGFDEDLVEALRERAKAAISTR 421
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ ++ + + SEEL ++ G+D + GI+T+EDLA +DDL+ E
Sbjct: 422 ALATEEALDGVEPSEELLALEGVDRHLAYVFASKGIETLEDLAEQGIDDLIEIEELTEEK 481
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
+I+ AR + W +E
Sbjct: 482 -----------------AGELIMAAR-NICWFGEE 498
>gi|237808991|ref|YP_002893431.1| transcription elongation factor NusA [Tolumonas auensis DSM 9187]
gi|237501252|gb|ACQ93845.1| NusA antitermination factor [Tolumonas auensis DSM 9187]
Length = 499
Score = 471 bits (1211), Expect = e-130, Method: Composition-based stats.
Identities = 206/514 (40%), Positives = 318/514 (61%), Gaps = 22/514 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + DAV+ EK++ R+ + + ++ A + Y ++RV I+ +TGD FR
Sbjct: 2 NKEILLVVDAVSNEKAVPREKIFQALETALATATKKKYEGDIEVRVTIDRKTGDFDTFRR 61
Query: 66 LEVVE---EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+VVE ++N +ISL A+ DPSI +G V + + + F R+ Q+AKQVI+QKV
Sbjct: 62 WQVVEGDGIMQNPYREISLDAAQYDDPSIQLGDYVEEQVESITFDRITTQTAKQVIVQKV 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181
REAER + +F+D+ G I++G VK+V ++I+DLG N++GV+ R++ + RE+ R GDR
Sbjct: 122 REAERAQIVEQFRDQEGTIVTGVVKKVNRDSIIMDLGSNAEGVLYREDMLPRESFRNGDR 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
VK + V+ E RG Q+ +SRTHP F+ +LF +EVPEI I+++K +RDPGSRAK+AV
Sbjct: 182 VKGLLAAVKPEARGSQLFISRTHPDFLKELFRIEVPEIGEEIIEIKGAARDPGSRAKIAV 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
++D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++
Sbjct: 242 KTNDRRIDPVGACVGMRGARVQAVSGELAGERIDIVLWDDNPAQFVINAMAPADVASLIV 301
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED +++ V L+ AIGR GQNVRLASQL+GW ++++T E+ Q + +
Sbjct: 302 DEDNHTMDIAVISSNLAQAIGRNGQNVRLASQLSGWELNVMTVEDMQTKHQAEKDRILTL 361
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F QA+++D+ A LLV EGF+ VEE+A V +SE+ I+G D E E++ RA++ L
Sbjct: 362 FTQALDIDDDFAELLVEEGFSTVEEIAYVPLSELQRIDGLDNEQIEELRERAKQALSTQA 421
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ ++ + +++L ++ G+ + L GI T+EDLA +DDL G
Sbjct: 422 LAKEETLAGAKPADDLLALQGMTLDLAYELAARGIPTLEDLAEQGIDDLSGIP------- 474
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G +++ +I+ AR + W ++
Sbjct: 475 ----------GMTEEKAGELIMAAR-NICWFGEQ 497
>gi|319427306|gb|ADV55380.1| NusA antitermination factor [Shewanella putrefaciens 200]
Length = 499
Score = 471 bits (1211), Expect = e-130, Method: Composition-based stats.
Identities = 203/515 (39%), Positives = 322/515 (62%), Gaps = 23/515 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L +A+AV+ EK++ R+ + + ++ A + Y D+RV I+ +TG FR
Sbjct: 2 NKEILLVAEAVSNEKAVPREKIFEALEIALATATKKKYDGDIDVRVAIDRKTGGYETFRR 61
Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
V+++ +EN +I+L+ AR +P I G + D + + F R+ Q+AKQVI+QK
Sbjct: 62 WMVIDDHGEALENPFREITLEAARYENPDIQPGEFIEDDIESVVFDRITTQTAKQVIVQK 121
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180
VREAER + +F+DK GE+I+G VK+ +V+VDLGN+ DGV+ R++ ISRE+ RPGD
Sbjct: 122 VREAERAQVVEQFRDKEGELITGVVKKATRESVVVDLGNNADGVLFREDLISRESFRPGD 181
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
RV++ +Y VR E RG Q+ LSRT P+ +++LF +EVPEI + +++V +RDPG+RAK+A
Sbjct: 182 RVRALLYSVRPEARGAQLFLSRTKPEMLIELFRVEVPEIADELIEVMGAARDPGARAKIA 241
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VINA+ PA V ++
Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINAMAPADVASII 301
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DED +++ V + L+ AIGR GQNVRLA+QLTGW ++++T E+ + Q + +
Sbjct: 302 VDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLTGWELNVMTVEDMNKKHQAESAKVVS 361
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
F+ +++VDE A +L EGF +EE+A V +SE+ +I+GFDE+ ++ RA+ +
Sbjct: 362 LFINSLDVDEDFAQVLANEGFTSLEEVAYVPVSELLAIDGFDEDLVEALRERAKAAISTR 421
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ ++ + + S+EL ++ G++ + L GI T+EDLA +DDL+ E
Sbjct: 422 ALASEEALDGVEPSDELLALEGVERHLAYVLASKGIVTLEDLAEQGIDDLIEIEELTEEK 481
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
++I+ AR + W +E
Sbjct: 482 -----------------AGTLIMAAR-NICWFGEE 498
>gi|90581550|ref|ZP_01237343.1| transcription elongation factor NusA [Vibrio angustum S14]
gi|90437312|gb|EAS62510.1| transcription elongation factor NusA [Vibrio angustum S14]
Length = 495
Score = 471 bits (1211), Expect = e-130, Method: Composition-based stats.
Identities = 199/511 (38%), Positives = 311/511 (60%), Gaps = 19/511 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + + D+RV I+ +TG+ FR
Sbjct: 2 NKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKHEAEIDVRVAIDRKTGEFETFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+ VEEV T +I+L+ A+ D +I G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WKAVEEVTQPTLEITLEAAQFEDSTIVAGDYVEDDIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER + +F D GE+I+G VK+V VI+DLGN+ + VI+RD+ + REN RPGDRV+
Sbjct: 122 ERAQIVEQFIDNEGELITGIVKKVNRDAVIIDLGNNAEAVIQRDDQLPRENFRPGDRVRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y V E RG Q+ ++R+ P+ + +LF +EVPE+ ++++ +RDPGSRAK+AV ++
Sbjct: 182 LLYKVAPEARGFQLFMTRSKPEMLSELFRIEVPEMGEELIELMGAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A +VINA+ PA V +++DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDENPAQYVINAMAPAEVDSIIVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V K+ L+ AIGR GQNVRLASQLTGW ++++T E+ Q++ E + F +
Sbjct: 302 NHTMDIAVQKDNLAQAIGRSGQNVRLASQLTGWELNVMTVEDLQKKHQEEAKESIEVFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A +LV EGF +EE+A V +SE+ ++G DEE +++ RA+ L + +
Sbjct: 362 HLDIDEEFATVLVEEGFTTLEEIAYVPVSELMDVDGLDEEIIDQLRSRAKAALTTLALAK 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + +E+L + G++ ++ GI T+EDLA DDL
Sbjct: 422 EETLDGAEPAEDLLGLEGLERELAFKFAAKGICTLEDLADQGTDDLTDIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G + +I+ AR + W E
Sbjct: 472 -------GVDDAKAGELIMAAR-NICWFSDE 494
>gi|258620312|ref|ZP_05715350.1| N utilization substance protein A [Vibrio mimicus VM573]
gi|262172282|ref|ZP_06039960.1| transcription termination protein NusA [Vibrio mimicus MB-451]
gi|262401660|ref|ZP_06078226.1| transcription termination protein NusA [Vibrio sp. RC586]
gi|258587191|gb|EEW11902.1| N utilization substance protein A [Vibrio mimicus VM573]
gi|261893358|gb|EEY39344.1| transcription termination protein NusA [Vibrio mimicus MB-451]
gi|262352077|gb|EEZ01207.1| transcription termination protein NusA [Vibrio sp. RC586]
Length = 495
Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats.
Identities = 201/509 (39%), Positives = 318/509 (62%), Gaps = 19/509 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + +AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG FR
Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRRWL 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVE VE+ T +IS + A D S+ +G + D + + F R+ Q+AKQVI+QKVREAER
Sbjct: 64 VVENVEHPTKEISFEAASFDDESVQMGDYIEDQIESVTFDRITTQTAKQVIVQKVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186
+ +F D GE+++G VK+V VI+DLGN+ + VI R++ + REN RPGDRV+ +
Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRGLL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
+ V E RG Q+ ++R+ P+ + +LF +EVPEI ++++KA +RDPGSRAK+AV ++D
Sbjct: 184 FKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTNDK 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED
Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDEDTH 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ +
Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMKYL 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426
++++ A LLV EGF+ +EE+A V ++E+ ++G DE+ A E++ RA+E L I + ++
Sbjct: 364 DIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLAEELRSRAKEALTTIALAKEE 423
Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486
L +E+L ++ G++ ++ L G+ T+EDLA VDDL G
Sbjct: 424 SFEGLEPAEDLLALAGLEREMAFKLAAKGVATLEDLADQGVDDLEGIE------------ 471
Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G + + +I+ AR + W ++
Sbjct: 472 -----GLTEQRAGELIMAAR-NICWFGED 494
>gi|300704337|ref|YP_003745940.1| transcription termination/antitermination l factor [Ralstonia
solanacearum CFBP2957]
gi|299072001|emb|CBJ43331.1| transcription termination/antitermination L factor [Ralstonia
solanacearum CFBP2957]
Length = 491
Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats.
Identities = 198/509 (38%), Positives = 328/509 (64%), Gaps = 24/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++D+DVV + ++ A + + ++RV I+ E+G+ FR
Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVEVRVAIDRESGEHETFRRWL 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ +I L AR+++P + I + + + ++FGR+ Q+AKQVI+Q++R+
Sbjct: 64 VVPDDAGLQEPDKEILLFEAREQNPDVSIDDFIEEQIESVEFGRIGAQAAKQVILQRIRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ ++ D+ +I++GT+KR + +IV+ G + ++ RD+ I +ENLR GDRV++
Sbjct: 124 AEREQILNDYLDRGEKIMTGTIKRADKKGLIVESGRVEALLARDQMIPKENLRTGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI +V R RGPQ+ LSRT P+F++KLF EVPE+ G++++KA +RDPG RAK+AV +
Sbjct: 184 YILNVDRTARGPQIELSRTCPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+
Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEVGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T E + + ++ + + FM+
Sbjct: 304 KHSMDVVVDEENLAVAIGRSGQNVRLASELTGWQINIMTPTESAQKQAEESSVVRKLFME 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VD+ +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR+ L +++
Sbjct: 364 RLDVDQEVADILIEEGFTSLEEVAYVPLQEMLEIEAFDEDTVNELRNRARDVLLTMELAK 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ VS++L + G+ ++ L E I+T +DLA +VD+L+ +
Sbjct: 424 EEKVE--KVSQDLRDLEGLTPELIGKLAEGNIQTRDDLAELAVDELVDMT---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513
G ++Q +++I+ AR W
Sbjct: 472 -------GVDEEQAKALIMKAREH--WFS 491
>gi|241662813|ref|YP_002981173.1| transcription elongation factor NusA [Ralstonia pickettii 12D]
gi|309782264|ref|ZP_07676992.1| transcription termination/antitermination protein NusA [Ralstonia
sp. 5_7_47FAA]
gi|240864840|gb|ACS62501.1| NusA antitermination factor [Ralstonia pickettii 12D]
gi|308918957|gb|EFP64626.1| transcription termination/antitermination protein NusA [Ralstonia
sp. 5_7_47FAA]
Length = 491
Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats.
Identities = 200/509 (39%), Positives = 329/509 (64%), Gaps = 24/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++D+DVV + ++ A + + D+RV I+ E+G+ FR
Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVDVRVAIDRESGEHETFRRWL 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ QI L A++++P +D+ V + + ++FGR+ Q+AKQVI+Q++R+
Sbjct: 64 VVPDDAGLQEPDKQILLFEAKEQNPDLDVDDFVEEQIESVEFGRIGAQAAKQVILQRIRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ ++ D+ ++++GT+KR + +IV+ G + ++ RD+ I +ENLR GDRV++
Sbjct: 124 AEREQILNDYLDRGEKVMTGTIKRADKKGLIVETGRVEALLARDQMIPKENLRTGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI +V R RGPQ+ LSRT P+F++KLF EVPE+ G++++KA +RDPG RAK+AV +
Sbjct: 184 YILNVDRTARGPQIELSRTCPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+
Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEVGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T E + + ++ + Q FM
Sbjct: 304 KHSMDVVVDEENLAVAIGRSGQNVRLASELTGWQINIMTPAESAQKQAEESSVVRQLFMA 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +L+ EGF+ +EE+A V + E+ IE FDE+T E++ RAR+ L +++
Sbjct: 364 KLDVDEEVADILIEEGFSSLEEVAYVPLQEMLEIEAFDEDTVNELRNRARDVLLTMELAK 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++++ VS++L + G+ ++ L E I+T +DLA +VD+L+ +
Sbjct: 424 EERVE--KVSQDLRDLEGLTPELIGKLAEGNIQTRDDLAELAVDELVEMT---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513
G ++Q +++I+ AR W
Sbjct: 472 -------GVDEEQAKALIMKAREH--WFS 491
>gi|253991503|ref|YP_003042859.1| transcription elongation factor NusA [Photorhabdus asymbiotica
subsp. asymbiotica ATCC 43949]
gi|211638381|emb|CAR67003.1| n utilization substance protein a (nusa protein) (l factor)
[Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
gi|253782953|emb|CAQ86118.1| n utilization substance protein a (nusa protein) (l factor)
[Photorhabdus asymbiotica]
Length = 502
Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats.
Identities = 209/518 (40%), Positives = 316/518 (61%), Gaps = 26/518 (5%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQDIDVRVSIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVEEV T +I+L+ AR +P I +G D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLVVEEVTQPTREITLEAARFEEPEITLGSYTEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F+++ GEII+ VK+V N+ +DLGN+ + VI R++ + REN RPGDRV+
Sbjct: 122 ERAMVVDQFREQQGEIITSVVKKVNRENITLDLGNNAEAVILREDMLPRENFRPGDRVRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+YDVR E RG Q+ +SR+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYDVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNE 357
++V V L+ AIGR GQNVRLA+QL W ++++T +E Q + +
Sbjct: 302 KCTMDVAVESNNLAQAIGRNGQNVRLAAQLLKKHRGDDKWELNVMTADELQAKHQAEAHA 361
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
F + +++DE A +LV EGF+ +EELA V I+E+ IEG DEET ++ RA+ L
Sbjct: 362 SIDIFTKHLDIDEEFATVLVEEGFSTLEELAYVPINELLEIEGLDEETIEVLRERAKAAL 421
Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477
+++ ++ + + +EEL ++ G++ + L GI T+EDLA +DDL
Sbjct: 422 TTLELAQKESLSDKQPTEELLNLTGMNRTLAFDLAACGICTLEDLAEQGIDDLSDIE--- 478
Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ +I+ AR + W +
Sbjct: 479 --------------GLNDEKAGELIMAAR-NICWFGDD 501
>gi|270158099|ref|ZP_06186756.1| transcription elongation protein NusA [Legionella longbeachae
D-4968]
gi|289163636|ref|YP_003453774.1| Transcription elongation protein nusA [Legionella longbeachae
NSW150]
gi|269990124|gb|EEZ96378.1| transcription elongation protein NusA [Legionella longbeachae
D-4968]
gi|288856809|emb|CBJ10620.1| Transcription elongation protein nusA [Legionella longbeachae
NSW150]
Length = 492
Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats.
Identities = 203/508 (39%), Positives = 332/508 (65%), Gaps = 23/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL +A+A++ E+ + +DV++ + +++ A R ++G +R++++P TGD FR +
Sbjct: 4 ELLLVAEALSNERGVSKDVIILAIQAALESATRKIFGLDIGVRIKLDPRTGDYETFRYWD 63
Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV +++E+ Q++L+ A+ R+PS+++G + + +P ++FGR+ Q+A+QVI+QKVREA
Sbjct: 64 VVTDDDLEDPDRQLTLEQAKTRNPSVNVGDRIEESIPSIEFGRIEAQAARQVIMQKVREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184
ER+ +F+ K+G++I GTVK+V N+I+DLG ++ + R E + E RP DRV++
Sbjct: 124 ERELVIDQFRGKLGQLIYGTVKKVTRDNIIIDLGGKAEAFLPRTEMLPHEMFRPNDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
Y+Y++ + RGPQ+ +SRT + +++LF +EVPEI +++VKA +RDPG+RAK+AV ++
Sbjct: 184 YLYEITPQARGPQLFVSRTRNEMLIELFRIEVPEIGENVIEVKAAARDPGNRAKIAVKTN 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E++DI++W + A VINA+ PA ++ +V+DED
Sbjct: 244 DGRIDPVGACVGMRGARVQAVSSELGGERVDIILWDDNPAQLVINAMAPADISSIVVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V K+QLS AIGR GQNVRLASQLTGWT++++T +E ++ ++ + F
Sbjct: 304 THTMDLAVEKDQLSQAIGRNGQNVRLASQLTGWTLNVMTTDEFENKNLEESSKIIKLFTS 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
A+ +DE IA LLVA GF+ +EE+A V E+ +IE FD+E E++ RA + L + ++
Sbjct: 364 ALEIDEEIATLLVAHGFSSLEEIAYVPKEELLAIEEFDDEIVEELRNRANDNLLTMALSS 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
K + + L ++ G+ + L GI +MEDLA SVD+LL
Sbjct: 424 NKDLSG-QPDDSLLTMEGMTQDLANQLATRGITSMEDLAEQSVDELLELD---------- 472
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512
G +D+ ++I+ AR W
Sbjct: 473 -------GMTEDKAAALIMKAREP--WF 491
>gi|117927003|ref|YP_867620.1| NusA antitermination factor [Magnetococcus sp. MC-1]
gi|117610759|gb|ABK46214.1| NusA antitermination factor [Magnetococcus sp. MC-1]
Length = 506
Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats.
Identities = 245/519 (47%), Positives = 351/519 (67%), Gaps = 21/519 (4%)
Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66
+E+LQ+AD VA EK IDR VV+ M +IQ A+R YG +I+ +P++G+ L +L
Sbjct: 3 VEILQVADQVAREKGIDRKVVIEAMESAIQTASRKKYGANKNIQARFDPKSGEFQLNQLR 62
Query: 67 EVV-----EEVE-NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
EVV E+++ + ISL+ A +P G +++ LPPM+FGR+A Q+AKQVI+Q
Sbjct: 63 EVVDLDQDEDLDFDEDIHISLEKALTMNPEAVPGDFIAEQLPPMEFGRIAAQTAKQVIVQ 122
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
KVR+AER+R + E+ D+ GE+++G VKRVE N+ VDLG + G + +E + RE+ RPGD
Sbjct: 123 KVRDAERERIFEEYADRQGEMVNGLVKRVERNNIHVDLGRTSGFLPHEEQLPREHYRPGD 182
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
R++++I +VR RGPQ++LSRTHPQ +V+LF MEVPEIY+GIV++KAV+RDPG R+K+A
Sbjct: 183 RIRAFIKEVREVTRGPQIILSRTHPQMVVRLFEMEVPEIYDGIVEIKAVARDPGHRSKIA 242
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S+D+ +DPVGACVGMRGSRVQ+VVTEL+ E+IDI+ WS D A FV NAL PA V KVV
Sbjct: 243 VRSNDAHVDPVGACVGMRGSRVQSVVTELQGERIDIIEWSHDPAVFVCNALAPAEVVKVV 302
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DE+ I+V+V + LSLAIGRRGQNVRLAS+LTGW IDIITE+E+ R++ F E Q
Sbjct: 303 VDEEDRNIKVVVDETALSLAIGRRGQNVRLASELTGWRIDIITEQEERNLREEMFGELQQ 362
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
FM+ +++ E +A +LV EGF EE+A V ++E+ SIEGFDEE A E++ RAR+ L
Sbjct: 363 TFMKDLDLGEEVAAVLVNEGFTSAEEVAYVPLNELTSIEGFDEEIAQELRNRARDTLLQQ 422
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ +++ EL + E L + + +AL E + T++DLA + D+L+ +
Sbjct: 423 ALQTEERKAELHIDERLAQLGLLTDDALIALAEKNVNTLDDLADLATDELVEMFDG---- 478
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVAD 519
+ E++I+ AR GW + E+
Sbjct: 479 -----------ELTTEDAETLILGARRAAGWFDDEEETA 506
>gi|253686985|ref|YP_003016175.1| NusA antitermination factor [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251753563|gb|ACT11639.1| NusA antitermination factor [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 509
Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats.
Identities = 205/526 (38%), Positives = 317/526 (60%), Gaps = 32/526 (6%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ +TGD FR
Sbjct: 2 NKEILAVVEAVSNEKAVPREKIFEALETALATATKKKYEQEIDVRVSIDRKTGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV EV T +I+L+ A+ D S+D+GG V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLVVNEVTQPTREITLEAAQFEDSSLDVGGYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-------NSDGVIRRDETISRENLRP 178
ER +F+++ GEII+G VK+V N+ +++ +++ VI R++ + REN RP
Sbjct: 122 ERAMVVDQFREQEGEIITGVVKKVNRDNISLEVRPIDGSNTSAEAVIGREDMLPRENFRP 181
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
GDR++ +Y VR E RG Q+ +SR+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK
Sbjct: 182 GDRIRGVLYSVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAK 241
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++D IDPVGACVGMRG+RVQAV +EL E+IDI++W + A FVINA+ PA V
Sbjct: 242 IAVKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPADVVS 301
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG-------WTIDIITEEEDSINR 351
+V+DED +++ V L+ AIGR GQNVRLASQL W ++++T E+
Sbjct: 302 IVVDEDTCTMDIAVESSNLAQAIGRNGQNVRLASQLLKQHRSDDRWELNVMTVEDLQAKH 361
Query: 352 QKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411
Q + + F + +++D+ A +LV EGF+ +EELA V I E+ +IEG DEET ++
Sbjct: 362 QAEAHAAIDVFTKHLDIDDEFATVLVEEGFSSLEELAYVPIKELLAIEGLDEETVEALRE 421
Query: 412 RAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471
RA+ L + + ++ + + +E+L S+PG+ ++ L G+ T+EDLA VDDL
Sbjct: 422 RAKAALTTLALAHEESLGDGQPAEDLLSLPGLSRELAFKLAAIGVCTLEDLAEQGVDDLT 481
Query: 472 GWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517
G +Q +I+ AR + W +
Sbjct: 482 DIE-----------------GLNDEQAGELIMAAR-NICWFGDDNE 509
>gi|255019834|ref|ZP_05291910.1| Transcription termination protein NusA [Acidithiobacillus caldus
ATCC 51756]
gi|254970763|gb|EET28249.1| Transcription termination protein NusA [Acidithiobacillus caldus
ATCC 51756]
Length = 493
Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats.
Identities = 230/508 (45%), Positives = 337/508 (66%), Gaps = 22/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL +ADAVA+EK +DR+V+ + S+ A++ YG DI V ++ +TGD + R
Sbjct: 4 ELLYLADAVAHEKEVDREVIFQALEASLVSASKKKYGPNWDIVVTVDRKTGDYTTRRRWT 63
Query: 68 VV-EEVENYTCQ--ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV ++ E++ + I L AR RD I +G V+ + LP ++FGR+A Q+AKQVI+Q+VR+
Sbjct: 64 VVADDAEDFEAEAQIRLSDARARDQGIAVGDVIEEELPDVEFGRIAAQTAKQVIVQRVRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AERDR +F + GEIISG VKR+E GN I+D+G ++ ++ ++E I RE +RPGDR+K
Sbjct: 124 AERDRIVADFAMRQGEIISGVVKRMEKGNAIIDMGRAEAILPKEEMIPREAIRPGDRIKV 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
++ +VRR RGPQ+ LSRT P+ ++KLF EVPEI NG++++ +RDPG RAKLAV S+
Sbjct: 184 HLKEVRRVPRGPQLFLSRTSPELLMKLFAQEVPEIANGMIEIMGAARDPGLRAKLAVRSN 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
+ +DPVGACVGMRG+RVQ V+ EL+ E++DIVVWSP+ A+FVINAL PA V+ +++DE+
Sbjct: 244 EPRVDPVGACVGMRGNRVQTVINELKGERVDIVVWSPEPASFVINALSPAEVSSIIVDEN 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V EQLSLAIGR GQNVRLASQLTGWTI+I+TE+E R+++ Q FM
Sbjct: 304 THSMDVVVDPEQLSLAIGRGGQNVRLASQLTGWTINILTEDEARAKREEEDARFRQQFMD 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+ +DE +A LLV EGF +EE+A V ++E+ IEG DEE E++ RAR+ L I
Sbjct: 364 DLGIDEDLATLLVNEGFTSIEEVAYVPVAEMLEIEGLDEELVTELRRRARDVLLNKAIAR 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++++ +E+L ++ G+D + L GI T E LA +VD+L
Sbjct: 424 EEQVVLSEPAEDLLALEGMDKGLAHLLASKGITTAESLAELAVDELCEL----------- 472
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512
+ ++ +++I+ AR W
Sbjct: 473 ------VDIEPERAKALILKARAP--WF 492
>gi|227327826|ref|ZP_03831850.1| transcription elongation factor NusA [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length = 509
Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats.
Identities = 205/526 (38%), Positives = 317/526 (60%), Gaps = 32/526 (6%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ +TGD FR
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALETALATATKKKYEQEIDVRVSIDRKTGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV EV T +I+L+ A+ DP++D+GG V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLVVNEVTQPTREITLEAAQFEDPALDVGGYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-------NSDGVIRRDETISRENLRP 178
ER +F+++ GEII+G VK+V N+ +++ +++ VI R++ + REN RP
Sbjct: 122 ERAMVVDQFREQEGEIITGVVKKVNRDNISLEVRPIDGSNTSAEAVIGREDMLPRENFRP 181
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
GDR++ +Y VR E RG Q+ +SR+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK
Sbjct: 182 GDRIRGVLYSVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAK 241
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++D IDPVGACVGMRG+RVQAV +EL E+IDI++W + A FVINA+ PA V
Sbjct: 242 IAVKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPADVVS 301
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG-------WTIDIITEEEDSINR 351
+V+DED +++ V L+ AIGR GQNVRLASQL W ++++T E+
Sbjct: 302 IVVDEDTCTMDIAVESSNLAQAIGRNGQNVRLASQLLKQHRSDDRWELNVMTVEDLQAKH 361
Query: 352 QKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411
Q + + F + +++DE A +LV EGF+ +EELA V I E+ +IEG DEET ++
Sbjct: 362 QAEAHAAIDVFTKHLDIDEEFATVLVEEGFSSLEELAYVPIKELLAIEGLDEETVEALRE 421
Query: 412 RAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471
RA+ L + + ++ + + +E+L +PG+ ++ L G+ T+EDLA VDDL
Sbjct: 422 RAKAALTTLALAHEESLGDGQPAEDLLGLPGLSRELAFKLAAIGVCTLEDLAEQGVDDLT 481
Query: 472 GWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517
E +Q +I+ AR + W +
Sbjct: 482 DIEE-----------------LNDEQAGELIMAAR-NICWFGDDNE 509
>gi|260771815|ref|ZP_05880733.1| transcription termination protein NusA [Vibrio metschnikovii CIP
69.14]
gi|260613107|gb|EEX38308.1| transcription termination protein NusA [Vibrio metschnikovii CIP
69.14]
Length = 495
Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats.
Identities = 198/509 (38%), Positives = 317/509 (62%), Gaps = 19/509 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + +AV+ EK++ R+ + + ++ + + + ++RV I+ +TG+ FR
Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALETALATSTKKKHEMEIEVRVAIDRKTGEFETFRRWL 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVE VE+ T +IS A D ++ +G + D + + F R+ Q+AKQVI+QKVREAER
Sbjct: 64 VVENVEHPTKEISFDAANYDDETVQLGDYIEDQIESVTFDRITTQTAKQVIVQKVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186
+ +F D GE+++G VK+V +VIVDLGN+ + VI R++ + REN R GDRV+ +
Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRDSVIVDLGNNAEAVILREDQLPRENFRSGDRVRGLL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
+ V E RG Q+ ++R+ P+ + +LF +EVPEI ++++K +RDPGSRAK+AV S+D
Sbjct: 184 FKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEEMIELKGAARDPGSRAKIAVKSNDK 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +++DED
Sbjct: 244 RIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDAH 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ +
Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESTASIEKFMKYL 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426
++++ A +LV EGF+ +EE+A V +SE+ I+G +EE EI+ RA+E L I +T ++
Sbjct: 364 DIEQDFAEMLVEEGFSTLEEIAYVPVSELLEIDGLNEEIIEEIRARAKEALTTIALTQEE 423
Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486
L +++L + G++ + L G+ T+EDLA +DDL G
Sbjct: 424 SFEGLEPADDLLGLAGLERDMAFKLAAKGVATLEDLADQGIDDLEGIE------------ 471
Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G +++ +I+ AR + W ++
Sbjct: 472 -----GLTEERAGELIMAAR-NICWFGED 494
>gi|77359942|ref|YP_339517.1| transcription elongation factor NusA [Pseudoalteromonas
haloplanktis TAC125]
gi|76874853|emb|CAI86074.1| transcription elongation protein (N utilization substance protein
A) (L factor) [Pseudoalteromonas haloplanktis TAC125]
Length = 499
Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats.
Identities = 191/514 (37%), Positives = 320/514 (62%), Gaps = 24/514 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L +A+AV+ EK++ ++ + + ++ A + +G D+RV I+ +TGD +R +
Sbjct: 4 EILLVAEAVSNEKAVPKEKIFEALEFALATATKKKHGGDIDVRVAIDRKTGDYDTYRRWQ 63
Query: 68 ---VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
V+E+ +EN +I+L+ A+ +P + +G V + + + F R+ Q AKQVI+QKV
Sbjct: 64 IAAVLEDGSLENPYSEITLEAAQVEEPDLQMGDFVEEQIDSIKFDRITTQMAKQVIVQKV 123
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
REAER E+K K GE+++G VK+ +++DLGN+ + VI RD+ + REN RPGDR
Sbjct: 124 REAERALVVEEYKSKEGELVTGVVKKATRDAIVLDLGNNAEAVIYRDDMLPRENFRPGDR 183
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++ +Y+V+ E RG Q+ ++R+ P+ +++LF +EVPEI +++++A +RDPGSRAK+AV
Sbjct: 184 IRGLLYEVKPEARGAQLFVTRSKPEMLMELFRIEVPEIGEEMIELRAAARDPGSRAKIAV 243
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+D IDP+GACVGMRG+RVQAV +EL E++DIV++ + A FVINA+ PA V +V+
Sbjct: 244 KSNDKRIDPIGACVGMRGARVQAVSSELGGERVDIVLYDDNPAQFVINAMAPAEVASIVM 303
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED +++ V + L+ AIGR GQNVRLASQLTGW ++++T E+ + + ++
Sbjct: 304 DEDTHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVEDMRSKNEAESDKLLNL 363
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F + + +D+ A LL+ EGF+ +EE+A V SE I+G DEET ++ RA++ L
Sbjct: 364 FTENLEIDDEFASLLINEGFSSLEEVAYVPASEFLEIDGLDEETVDLLRSRAKDALTTKA 423
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ ++ + +E+L ++ G++ + + G+ T+EDLA +D+L+ +E
Sbjct: 424 LKTEESLDGAEPAEDLLALEGLERHLAFVMASKGVITLEDLAEQGIDELVDITE------ 477
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
++ +I+ AR + W E
Sbjct: 478 -----------LSPEKAGELIMAAR-NICWFADE 499
>gi|227112574|ref|ZP_03826230.1| transcription elongation factor NusA [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
Length = 509
Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats.
Identities = 204/526 (38%), Positives = 316/526 (60%), Gaps = 32/526 (6%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ +TGD FR
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALETALATATKKKYEQEIDVRVSIDRKTGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV EV T +I+L+ A+ DP++D+GG V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLVVNEVTQPTREITLEAAQFEDPALDVGGYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-------NSDGVIRRDETISRENLRP 178
ER +F+++ GEII+G VK+V N+ +++ +++ VI R++ + REN RP
Sbjct: 122 ERAMVVDQFREQEGEIITGVVKKVNRDNISLEVRPIDGSNTSAEAVIGREDMLPRENFRP 181
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
GDR++ +Y VR E RG Q+ +SR+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK
Sbjct: 182 GDRIRGVLYSVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAK 241
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++D IDPVGACVGMRG+RVQAV +EL E+IDI++W + A FVINA+ PA V
Sbjct: 242 IAVKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPADVVS 301
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG-------WTIDIITEEEDSINR 351
+V+DED +++ V L+ AIGR GQNVRLASQL W ++++T E+
Sbjct: 302 IVVDEDTCTMDIAVESSNLAQAIGRNGQNVRLASQLLKQHRSDDRWELNVMTVEDLQAKH 361
Query: 352 QKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411
Q + + F + +++D+ A +LV EGF+ +EELA V I E+ +IEG DEET ++
Sbjct: 362 QAEAHAAIDVFTKHLDIDDEFATVLVEEGFSSLEELAYVPIKELLAIEGLDEETVEALRE 421
Query: 412 RAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471
RA+ L + + ++ + +E+L +PG+ ++ L G+ T+EDLA VDDL
Sbjct: 422 RAKAALTTLALAHEESRGDGQPAEDLLGLPGLSRELAFKLAAIGVCTLEDLAEQGVDDLT 481
Query: 472 GWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517
E +Q +I+ AR + W +
Sbjct: 482 DIEE-----------------LNDEQAGELIMAAR-NICWFGDDNE 509
>gi|90022354|ref|YP_528181.1| transcription elongation factor NusA [Saccharophagus degradans
2-40]
gi|89951954|gb|ABD81969.1| transcription termination factor NusA [Saccharophagus degradans
2-40]
Length = 493
Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats.
Identities = 206/513 (40%), Positives = 324/513 (63%), Gaps = 25/513 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+ E+L +ADAV+ EK +D+ ++ + ++ A + Y +DI+V I+ + GD R
Sbjct: 2 KKEILLVADAVSNEKGVDKGIIFEAIELALASATKKRYDEDADIKVTIDRKDGDYVTVRR 61
Query: 66 LEVVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
VV++ Q + + A ++DPS+ G V + + +DFGR+A Q+AKQVI+QKVR
Sbjct: 62 WLVVDDDTLAELGTQFTTEEAIEKDPSLKPGDVYEEVIENVDFGRIAAQTAKQVIVQKVR 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182
EAER + E++ +VGE+I+GTVK+V N+IVDLG + +G++ R+E + RE R DRV
Sbjct: 122 EAERAQIVDEYRGRVGELIAGTVKKVTRDNIIVDLGGNAEGLLPREELVGREVFRMNDRV 181
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
++ + DVR E RGPQ+ LSR P+ +++LF +EVPEI ++ + A +RDPGSRAK+AV
Sbjct: 182 RAVLADVRPEARGPQLFLSRACPEMLIELFKIEVPEIAEEVISLNAAARDPGSRAKIAVA 241
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
++D IDPVGACVGMRGSRVQAV EL +E+IDI++W + A FVINA+ PA + +V+D
Sbjct: 242 TNDGRIDPVGACVGMRGSRVQAVSNELGNERIDIILWDDNPAQFVINAMAPAEIESIVVD 301
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
E+ G ++V V ++ L+ AIGR GQNVRLAS+LTGW I++++ ++ + + + F
Sbjct: 302 EEAGSMDVAVAEDNLAQAIGRGGQNVRLASELTGWEINVMSVDQWNEKQAAEAGSARDVF 361
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
+ A+++DE +A +LV EGF +EE+A V + E +IEGFDEE A E++ RA++ L +
Sbjct: 362 INALDIDEDVADVLVDEGFTTLEEVAYVPLEEFLAIEGFDEEIAEELRNRAKDALLTQAL 421
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482
++K +++L ++ G+D + L G+ MEDLA +VD+L+
Sbjct: 422 AGEEK---NQPADDLVNMEGMDDALAQTLAARGVICMEDLAEQAVDELMEID-------- 470
Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G +++ ++I+ AR W E
Sbjct: 471 ---------GMDEERAAALIMKAREP--WFADE 492
>gi|194289950|ref|YP_002005857.1| transcription elongation factor nusa [Cupriavidus taiwanensis LMG
19424]
gi|193223785|emb|CAQ69792.1| transcription termination/antitermination L factor [Cupriavidus
taiwanensis LMG 19424]
Length = 491
Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats.
Identities = 210/509 (41%), Positives = 333/509 (65%), Gaps = 24/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++D+DVV + ++ A + + DIRV I+ E+G+ FR
Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVDIRVAIDRESGEHETFRRWL 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ QI L AR+ +PSI++G + + ++FGR+ Q+AKQVI+Q++R+
Sbjct: 64 VVPDELGLQEPDKQILLFEAREENPSIELGDYIEQQIESVEFGRIGAQAAKQVILQRIRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ ++ D+ +I++GTVKR + +IV+ G + ++ RD+ I +ENLR GDRV++
Sbjct: 124 AEREQILNDYLDRGEKIMTGTVKRADKKGLIVESGRVEALLARDQIIPKENLRTGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI +V R RGPQ+ LSRT P F++KLF EVPE+ G++++KA +RDPG RAK+AV +
Sbjct: 184 YILNVDRAARGPQIELSRTAPDFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+
Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEIGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T+EE + + ++ + + FM
Sbjct: 304 KHSMDVVVDEENLAVAIGRSGQNVRLASELTGWQINIMTQEESAQKQAEESDVVRKLFMS 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +L+ EGF+ +EE+A V ISE+ IE FDE+T E++ RAR+ L +++
Sbjct: 364 KLDVDEEVADILIEEGFSTLEEVAYVPISEMMEIEAFDEDTVNELRNRARDALLTMELAR 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ E VS++L S+ G++ ++ L E I T +DLA +VD+L+ +
Sbjct: 424 EEKVEE--VSQDLRSLDGLNPELIGKLAEGDIHTRDDLAELAVDELVEMT---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513
G +++ +S+I+ AR W
Sbjct: 472 -------GVSEEEAKSLIMKAREH--WFN 491
>gi|89095215|ref|ZP_01168138.1| transcription elongation factor NusA [Oceanospirillum sp. MED92]
gi|89080512|gb|EAR59761.1| transcription elongation factor NusA [Oceanospirillum sp. MED92]
Length = 495
Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats.
Identities = 210/513 (40%), Positives = 329/513 (64%), Gaps = 22/513 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L +A+AV+ EK + ++V+ + ++ A + Y +DIRV I+ TGD FR
Sbjct: 2 NKEILLVAEAVSNEKDVPKEVIFEAIEVALATATKKRYDEEADIRVVIDRATGDYETFRR 61
Query: 66 LEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
VV EEV +++++ A + D ++ G + + + + FGR+A Q+AKQVI+QKVR
Sbjct: 62 WLVVSNEEVPALGTELTMEEAEEIDTALQPGDIHEEQVESVAFGRIAAQTAKQVIVQKVR 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182
EAER + +++D+ GE+ISG+VK+V N+IVDLGN+ + ++ RD+ I RE R GDRV
Sbjct: 122 EAERAKVVEQYRDRQGELISGSVKKVTRDNIIVDLGNNAEALLPRDQLIQREAFRMGDRV 181
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
++ + +VR E RGPQ+++SR+ + +++LF +EVPEI +++++A SRDPGSRAK+AV
Sbjct: 182 RAVLKEVRSEGRGPQLIMSRSCNEMLIELFRIEVPEISEEVIEIRAASRDPGSRAKIAVK 241
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
++D IDPVGACVGMRG+RVQAV EL E++DIV+W + A VINA+ PA V +VLD
Sbjct: 242 TNDGRIDPVGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQLVINAMAPAEVASIVLD 301
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
E+ ++V V +E L++AIGR GQNVRLAS+LTGW ++++TEE+ Q + F
Sbjct: 302 EETHSMDVAVAEENLAMAIGRSGQNVRLASELTGWELNVMTEEDAQAKHQSEVGSVIDNF 361
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
+ ++VDE +A +LV EGF +EE+A V + E+ I+GFDE+ E++ RA++ L + I
Sbjct: 362 INHLDVDEDVAEVLVEEGFTTLEEVAYVPVDEMLEIDGFDEDIVEELRKRAKDALLNLAI 421
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482
++K+ + +E+L ++ G+D + + GI TMEDLA S+DDLL
Sbjct: 422 ASEEKLDKAEPAEDLLTMEGMDKHLAFLMAAQGIITMEDLAEQSIDDLLDIE-------- 473
Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G +++ ++I+ AR W +E
Sbjct: 474 ---------GLDEEKAAALIMTARAP--WFAEE 495
>gi|515637|gb|AAA20049.1| transcription factor [Salmonella enterica subsp. enterica serovar
Typhimurium]
Length = 500
Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats.
Identities = 200/516 (38%), Positives = 316/516 (61%), Gaps = 24/516 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPG 179
ER +F+D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPG
Sbjct: 122 ERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPG 181
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
DR++ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+
Sbjct: 182 DRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 241
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV ++D IDPVGACVGMR +RVQAV TEL E+IDIV+W + A FVINA+ PA V +
Sbjct: 242 AVKTNDKRIDPVGACVGMRRARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 301
Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + +
Sbjct: 302 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAI 361
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+ F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L
Sbjct: 362 EIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALAT 421
Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479
+ + + + +++L ++ G+D + L G+ T+EDLA +D L
Sbjct: 422 LAQDQEASLGDNKPADDLLNLEGVDRDMAFKLAARGVCTLEDLAQQGIDHLADIE----- 476
Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ ++II AR + W E
Sbjct: 477 ------------GLTDEKAGALIIAAR-NICWFGDE 499
>gi|257094534|ref|YP_003168175.1| transcription elongation factor NusA [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257047058|gb|ACV36246.1| NusA antitermination factor [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
Length = 490
Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats.
Identities = 210/508 (41%), Positives = 330/508 (64%), Gaps = 23/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + D +A EK++ +D+V + ++ A + +++RV ++ ETGD FR E
Sbjct: 4 EILLLVDVLAREKNVTKDIVFGALEMALASATKKRVHDNANVRVVVDRETGDFETFRRWE 63
Query: 68 VVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV + + + QI L A+++DP ++IG + + L P+DFGR+ Q+AKQVI+Q++R+A
Sbjct: 64 VVADGDFLDEEQQIPLSDAQEQDPEVEIGDFLEESLEPIDFGRIGAQAAKQVILQRIRDA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER++ +F + +++GT+KR+E GN I++ G + V+ RD+ I RENLR GDRVK+Y
Sbjct: 124 EREQILNDFLARKEHLVTGTIKRMERGNAIIETGKIEAVLPRDQMIPRENLRIGDRVKAY 183
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ + R RGPQ++LSRT P+F+++LF +EVPE+ +G++++KA +RDPG RAK+AV S+D
Sbjct: 184 LLRIDRAARGPQLILSRTAPEFIIRLFALEVPEVDDGLLEIKAAARDPGMRAKIAVKSND 243
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
IDP+G CVGMRG RV AV EL E++DIV+WS D A FVI AL PA V+ +++DE+
Sbjct: 244 QRIDPIGTCVGMRGMRVTAVTNELAGERVDIVLWSADPAQFVIGALAPAEVSSIIVDEEK 303
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
++V+V ++ L++AIGR GQNVRLAS++TGWTI+++TEEE + + FM+
Sbjct: 304 HSMDVVVDEQNLAIAIGRGGQNVRLASEMTGWTINLMTEEESKTLVEAEAAAIRVLFMEK 363
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425
++VDE +A++L+ EGF+ +EE+A V + E+ IE FDE T E++ RAR L I +
Sbjct: 364 LDVDEELANILIEEGFSTLEEVAYVPLHEMIEIESFDEATVQELRERARNVLLTDAIVTE 423
Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485
+KI E V+E++ ++ G+D + L +GIKT +DLA +VD+L +
Sbjct: 424 EKIGE--VAEDMLNLEGMDKVLAGKLASSGIKTRDDLADLAVDELTEIT----------- 470
Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIE 513
G + + +I AR W E
Sbjct: 471 ------GIDTPRAKQLITTARAH--WFE 490
>gi|262189773|ref|ZP_06048124.1| transcription termination protein NusA [Vibrio cholerae CT 5369-93]
gi|262034350|gb|EEY52739.1| transcription termination protein NusA [Vibrio cholerae CT 5369-93]
Length = 504
Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats.
Identities = 203/517 (39%), Positives = 318/517 (61%), Gaps = 18/517 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + +AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG FR
Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRRWL 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVE VE+ T +IS + A D S+ +G + D + + F R+ Q+AKQVI+QKVREAER
Sbjct: 64 VVENVEHPTKEISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQKVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186
+ +F D GE+++G VK+V VI+DLGN+ + VI R++ + REN RPGDRV+ +
Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRGLL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
Y V E RG Q+ ++R+ P+ + +LF +EVPEI ++++KA +RDPGSRAK+AV ++D
Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTNDK 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED
Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDEDAH 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ +
Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMKYL 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426
++++ A LLV EGF+ +EE+A V ++E+ ++G DE+ A E++ RA+E L I + ++
Sbjct: 364 DIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTIALAKEE 423
Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486
L +E+L ++ G++ + L G+ T+EDLA VDDL G
Sbjct: 424 SFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIE------------ 471
Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523
G + + +I+ AR +G ++ E
Sbjct: 472 -----GLTEQRAGELIMAARNIVGLVKTHNFQQGEEA 503
>gi|167950226|ref|ZP_02537300.1| transcription elongation factor NusA [Endoriftia persephone
'Hot96_1+Hot96_2']
gi|110589422|gb|ABG77220.1| N utilization substance protein A [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 497
Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats.
Identities = 208/515 (40%), Positives = 320/515 (62%), Gaps = 27/515 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DAV+ EK +++ ++ + ++ A R G +RVEI+ +GD FR E
Sbjct: 4 EILLVVDAVSNEKGVEKVIIFEAIEAALASATRKKNGDDILVRVEIDRTSGDYESFRRWE 63
Query: 68 VVEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
VVE+ + QI A+++ P I IG + + + ++FGR+A Q+AKQVI+QKV
Sbjct: 64 VVEDYSSDEPDAPLRQIIFDAAKEQQPDIQIGDFIEEEIDSIEFGRIAAQAAKQVIVQKV 123
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
REAER + ++D+ GE+++G VKRV+ GNV +DLG + + I R+ I +E +R GDR
Sbjct: 124 REAERAKVVAAYEDRKGELVTGVVKRVDRGNVFLDLGGNAEAFIGREHMIPKEAVRVGDR 183
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++ Y+Y++R E RGPQ+ +SRT P+ +++LF +EVPE+ G+++++ +RD G RAK+AV
Sbjct: 184 IRGYLYEIRSEVRGPQLFVSRTMPELLIELFKLEVPEVGEGLIEIRGAARDAGLRAKIAV 243
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
+ DS IDPVGACVGMRGSRVQAV EL E++DI++W+ + A FVI+A+ PA V +V+
Sbjct: 244 KALDSRIDPVGACVGMRGSRVQAVSNELNGERVDIILWNDNPAQFVIDAMSPADVVSIVV 303
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED ++V V +E LS AIGR GQNVRLASQLTGW ++++ E + + ++ +
Sbjct: 304 DEDRHAMDVAVSEENLSQAIGRGGQNVRLASQLTGWELNVMDEAQAAEKSDQESRGFIEA 363
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM+ + VDE +A +LV EGF V+E+A V I E+ IE FD++ E++ RA++ L
Sbjct: 364 FMEHLGVDEDVATILVQEGFTSVDEVAYVPIEEMLGIEEFDDDLVDELRNRAKDVLLTKA 423
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
I ++ +E+L ++ G+D + L +GI TMEDLA SVDDL+
Sbjct: 424 IAKEEAF--AEPAEDLLTMDGMDKDLAYLLASHGIATMEDLAEQSVDDLMDVE------- 474
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
G +++ +II AR W E +
Sbjct: 475 ----------GMDEERAGKLIITARAP--WFEDAE 497
>gi|83748667|ref|ZP_00945684.1| N utilization substance protein A [Ralstonia solanacearum UW551]
gi|207743364|ref|YP_002259756.1| n utilization substance protein [Ralstonia solanacearum IPO1609]
gi|83724629|gb|EAP71790.1| N utilization substance protein A [Ralstonia solanacearum UW551]
gi|206594761|emb|CAQ61688.1| n utilization substance protein [Ralstonia solanacearum IPO1609]
Length = 491
Score = 468 bits (1204), Expect = e-129, Method: Composition-based stats.
Identities = 198/509 (38%), Positives = 328/509 (64%), Gaps = 24/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++D+DVV + ++ A + + ++RV I+ E+G+ FR
Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVEVRVAIDRESGEHETFRRWL 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ QI L AR+++P + I + + + ++FGR+ Q+AKQVI+Q++R+
Sbjct: 64 VVPDDAGLQEPDKQILLFEAREQNPDVSIDEFIEEQIESVEFGRIGAQAAKQVILQRIRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ ++ ++ +I++GT+KR + +IV+ G + ++ RD+ I +ENLR GDRV++
Sbjct: 124 AEREQILNDYLERGEKIMTGTIKRADKKGLIVESGRVEALLARDQMIPKENLRTGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI +V R RGPQ+ LSRT P+F++KLF EVPE+ G++++KA +RDPG RAK+AV +
Sbjct: 184 YILNVDRTARGPQIELSRTCPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+
Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEVGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T E + + ++ + + FM+
Sbjct: 304 KHSMDVVVDEENLAVAIGRSGQNVRLASELTGWQINIMTPTESAQKQAEESSVVRKLFME 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VD+ +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR+ L +++
Sbjct: 364 RLDVDQEVADILIEEGFTSLEEVAYVPLQEMLEIEAFDEDTVNELRNRARDVLLTMELAK 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ VS++L + G+ ++ L E I+T +DLA +VD+L+ +
Sbjct: 424 EEKVE--KVSQDLRDLEGLTPELIGKLAEGNIQTRDDLAELAVDELVDMT---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513
G ++Q +++I+ AR W
Sbjct: 472 -------GVDEEQAKALIMKAREH--WFS 491
>gi|24372786|ref|NP_716828.1| transcription elongation factor NusA [Shewanella oneidensis MR-1]
gi|24346871|gb|AAN54273.1|AE015564_4 N utilization substance protein A [Shewanella oneidensis MR-1]
Length = 499
Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats.
Identities = 205/515 (39%), Positives = 321/515 (62%), Gaps = 23/515 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L +A+AV+ EK++ R+ + + ++ A + Y D+RV I+ +TG FR
Sbjct: 2 NKEILLVAEAVSNEKAVPREKIFEALETALATATKKKYEGDIDVRVAIDRKTGAYETFRR 61
Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
V+++ +EN +I+L+ AR +P I G + D + + F R+ Q+AKQVI+QK
Sbjct: 62 WMVIDDNGVALENPYREITLEAARFEEPEIQPGEYIEDQIESVAFDRITTQTAKQVIVQK 121
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180
VREAER + +F+DK GE+I+G VK+ +V+VDLGN+ DGV+ R++ ISRE+ RPGD
Sbjct: 122 VREAERAQVVEQFQDKEGELITGVVKKATRESVVVDLGNNADGVLFREDLISRESFRPGD 181
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
RV++ +Y VR E RG Q+ L+RT P +++LF +EVPEI + +++V +RDPG+RAK+A
Sbjct: 182 RVRALLYSVRPEARGAQLFLTRTKPDMLIELFRVEVPEIADELIEVMGAARDPGARAKIA 241
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VINA+ PA V ++
Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINAMAPADVASII 301
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DED +++ V E L+ AIGR GQNVRLA+QLTGW ++++T E+ + Q + +
Sbjct: 302 VDEDNHSMDIAVEAESLAQAIGRNGQNVRLATQLTGWELNVMTVEDMNKKHQAESAKVKS 361
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
FM++++VDE A +L EGF +EE+A V +SE+ +I+GFDE+ ++ RA+ +
Sbjct: 362 LFMKSLDVDEDFAQVLADEGFTSLEEVAYVPVSELLAIDGFDEDLVEALRERAKAAISTR 421
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ ++ + + SEEL ++ G++ + L GI T+EDLA +DDL+ E
Sbjct: 422 ALASEEALDGVEPSEELLALEGVERHLAYVLASKGIVTLEDLAEQGIDDLIEIEELTEEK 481
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
+I+ AR + W +E
Sbjct: 482 -----------------AGELIMAAR-NICWFGEE 498
>gi|300691722|ref|YP_003752717.1| transcription termination/antitermination L factor [Ralstonia
solanacearum PSI07]
gi|299078782|emb|CBJ51442.1| transcription termination/antitermination L factor [Ralstonia
solanacearum PSI07]
Length = 491
Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats.
Identities = 200/509 (39%), Positives = 329/509 (64%), Gaps = 24/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++D+DVV + ++ A + + ++RV I+ E+G+ FR
Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVEVRVAIDRESGEHETFRRWL 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ QI L AR+++P + I + + + ++FGR+ Q+AKQVI+Q++R+
Sbjct: 64 VVPDDAGLQEPDKQILLFEAREQNPDVSIDEFIEEQIESVEFGRIGAQAAKQVILQRIRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ ++ D+ +I++GT+KR + +IV+ G + ++ RD+ I +ENLR GDRV++
Sbjct: 124 AEREQILNDYLDRGEKIMTGTIKRADKKGLIVESGRVEALLARDQMIPKENLRTGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI +V R RGPQ+ LSRT P+F++KLF EVPE+ G++++KA +RDPG RAK+AV +
Sbjct: 184 YILNVDRTARGPQIELSRTCPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+
Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEVGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T E + ++++ + + FM+
Sbjct: 304 KHSMDVVVDEENLAVAIGRSGQNVRLASELTGWQINIMTPTESAQKQEEESSAVRKLFME 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR+ L +++
Sbjct: 364 KLDVDEEVADILIEEGFTSLEEVAYVPLQEMLEIEAFDEDTVNELRNRARDVLLTMELAK 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ VS++L + G+ ++ L E I+T +DLA +VD+L+ +
Sbjct: 424 EEKVE--KVSQDLRDLEGLTPELIGKLAEGNIQTRDDLAELAVDELVDMT---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513
G ++Q +++I+ AR W
Sbjct: 472 -------GVDEEQAKALIMKAREH--WFS 491
>gi|207723239|ref|YP_002253638.1| n utilization substance protein [Ralstonia solanacearum MolK2]
gi|206588435|emb|CAQ35398.1| n utilization substance protein [Ralstonia solanacearum MolK2]
Length = 491
Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats.
Identities = 198/509 (38%), Positives = 328/509 (64%), Gaps = 24/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++D+DVV + ++ A + + ++RV I+ E+G+ FR
Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVEVRVAIDRESGEHETFRRWL 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ QI L AR+++P + I + + + ++FGR+ Q+AKQVI+Q++R+
Sbjct: 64 VVPDDAGLQEPDKQILLFEAREQNPDVSIDEFIEEQIESVEFGRIGAQAAKQVILQRIRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ ++ ++ +I++GT+KR + +IV+ G + ++ RD+ I +ENLR GDRV++
Sbjct: 124 AEREQILNDYLERGEKIMTGTIKRADKKGLIVESGRVEALLARDQMIPKENLRTGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI +V R RGPQ+ LSRT P+F++KLF EVPE+ G++++KA +RDPG RAK+AV +
Sbjct: 184 YILNVDRTARGPQIELSRTCPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+
Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEVGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T E + + ++ + + FM+
Sbjct: 304 KHSMDVVVDEENLAVAIGRSGQNVRLASELTGWQINIMTPAESAQKQAEESSVVRKLFME 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VD+ +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR+ L +++
Sbjct: 364 RLDVDQEVADILIEEGFTSLEEVAYVPLQEMLEIEAFDEDTVNELRNRARDVLLTMELAK 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ VS++L + G+ ++ L E I+T +DLA +VD+L+ +
Sbjct: 424 EEKVE--KVSQDLRDLEGLTPELIGKLAEGNIQTRDDLAELAVDELVDMT---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513
G ++Q +++I+ AR W
Sbjct: 472 -------GVDEEQAKALIMKAREH--WFS 491
>gi|315634096|ref|ZP_07889385.1| N utilization substance A [Aggregatibacter segnis ATCC 33393]
gi|315477346|gb|EFU68089.1| N utilization substance A [Aggregatibacter segnis ATCC 33393]
Length = 498
Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats.
Identities = 200/513 (38%), Positives = 317/513 (61%), Gaps = 24/513 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L A+AV+ EK + R+ + + +I + + Y D+RV IN +TG+ FR
Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIALSTKKKYEYDVDVRVAINTKTGEFDTFRRWL 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV N T +I+L+ AR DP+ IG V D + + F R+A+Q+A+QVI K+REAER
Sbjct: 64 VVEEVNNPTKEITLEAARFEDPNAQIGDYVEDQIESIAFDRIAMQTARQVISTKIREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGDRV 182
+ +F+ K G+II+ TVK+ +VI+D+ ++ V+ R++ + REN RPGDRV
Sbjct: 124 SKIVDQFRSKEGQIITATVKKSNRDSVILDVNGEDGNKAEAVMLREDMLPRENFRPGDRV 183
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
+ +Y V E +G Q+ ++R P+ +++LF +EVPEI ++++++ +RDPGSRAK+AV
Sbjct: 184 RGVLYKVSPESKGAQLFVTRAKPEMLIELFRLEVPEIGEELIEIRSAARDPGSRAKIAVK 243
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
S+D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+D
Sbjct: 244 SNDKRIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIVVD 303
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
ED +++ V + L+ AIGR GQNVRLA+QLTGW ++++T ++ + Q + ++ F
Sbjct: 304 EDKHAMDIAVEEANLAQAIGRNGQNVRLATQLTGWVLNVMTTQDLNAKHQAEDDKVLNLF 363
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGID 421
+ A+ +DE A LL+ EGF+ +EELA V +SE+ +I+G DE+ E+Q RA+ +
Sbjct: 364 IDALEIDEEFAQLLIDEGFSTLEELAYVSVSELTAIDGLEDEDLVEELQTRAKNAITAKA 423
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ ++ +++ + + L ++ G++ I L E I T+EDLA VDDL
Sbjct: 424 LAEEEALKKAKIEDRLLNLEGMNRHIAFKLAEKQITTLEDLAEQGVDDLADIE------- 476
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
G +Q +I+ AR + W +
Sbjct: 477 ----------GLSAEQAADLIMAAR-NICWFTE 498
>gi|239997162|ref|ZP_04717686.1| transcription elongation factor NusA [Alteromonas macleodii ATCC
27126]
Length = 498
Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats.
Identities = 203/515 (39%), Positives = 316/515 (61%), Gaps = 22/515 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L +A+AV+ EK + R+ + + +I A + ++RV I+ +GD FR
Sbjct: 2 NKEILLVAEAVSNEKQVPREKIFEALEFAIASATKKKNEGEIEVRVSIDRTSGDFDTFRR 61
Query: 66 LEVVEEV---ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
V+ + EN +I++ A+ +P I +G V + + + F R+ Q+AKQVI+QKV
Sbjct: 62 WLVIPDDQEQENPFAEITISAAQIDEPEIQLGDYVEEQIESIKFDRITTQTAKQVIVQKV 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
REAER + E++DKVGE+++GTVK+V N+I+DLGN+ +GVI RD+ + RE RPGDR
Sbjct: 122 REAERQQMIAEYEDKVGELVTGTVKKVNRDNIIIDLGNNAEGVIYRDDMLPRETFRPGDR 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V+ +Y +R E RG Q+ +SRTHP +V+LF +EVPEI +++K+ +RDPGSRAK+AV
Sbjct: 182 VRGLLYVIRPEARGAQLFISRTHPDMLVELFRLEVPEIAEETLEIKSAARDPGSRAKIAV 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
++D +DPVGACVGMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +V+
Sbjct: 242 KTNDKRLDPVGACVGMRGSRVQAVSGELGGERVDIVLWDENPAQFVINAMAPAEVASIVV 301
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED ++V V + L+ AIGR GQNVRLASQLTGW ++++T E+ + +++ +
Sbjct: 302 DEDSNSMDVAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVEDLNKKHEEENAKVLDL 361
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F +++DE A +LV EGF +EE+A V SE+ ++EG DEE E++ RAR +L
Sbjct: 362 FTAGLDIDEEFASVLVDEGFTTLEEVAYVPASELLAVEGLDEEMVEELRNRARAFLTTRA 421
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ ++ + +E L ++ G+ + L G+ +E+LA DD+ E
Sbjct: 422 LANEESLEGAEPTEALLNLEGMSKHVAYVLASRGVTDLEELAEQGTDDISDIDE------ 475
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
+++ ++I+ AR + W +E+
Sbjct: 476 -----------LDEEKAGALIMAAR-NIVWFSEEE 498
>gi|322831213|ref|YP_004211240.1| NusA antitermination factor [Rahnella sp. Y9602]
gi|321166414|gb|ADW72113.1| NusA antitermination factor [Rahnella sp. Y9602]
Length = 502
Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats.
Identities = 200/517 (38%), Positives = 315/517 (60%), Gaps = 26/517 (5%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR
Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALEIALSTATKKKYEQEIEVRVSIDRKTGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
V EV T +I+L+ A+ DPSID+GG + D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WVAVNEVTQPTREITLEAAQYEDPSIDLGGYIEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184
ER +F+++ GEI++G VK+V ++ +DLG N++ VI R++ + REN R GDR++
Sbjct: 122 ERAMVVDQFREQQGEIVTGVVKKVNRDSIALDLGSNAEAVILREDMLPRENFRSGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+YDVR E RG Q+ +SR+ + +++LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYDVRPEARGAQLFVSRSRNEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDI++W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNE 357
+++ V L+ AIGR GQNVRLASQL W ++++T ++ Q + +
Sbjct: 302 KCTMDIAVEASNLAQAIGRNGQNVRLASQLLKQHRGDDKWELNVMTADDLQAKHQAEAHA 361
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
F + + +DE A +LV EGF+ +EELA V ++E+ I+G DE+T ++ RA+E L
Sbjct: 362 AIDTFTKYLAIDEDFATVLVEEGFSTLEELAYVPVNELLEIDGLDEDTVDALRERAKEAL 421
Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477
+ + ++ + + +++L ++ G++ + L G+ T+EDLA VDDL
Sbjct: 422 TTLALAQEESLGDKKPADDLLNLAGLERSMAFKLAAQGVCTLEDLAEQGVDDLADIE--- 478
Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
G +Q +I+ AR + W
Sbjct: 479 --------------GLTDEQAGELIMAAR-NICWFGD 500
>gi|187928209|ref|YP_001898696.1| transcription elongation factor NusA [Ralstonia pickettii 12J]
gi|187725099|gb|ACD26264.1| NusA antitermination factor [Ralstonia pickettii 12J]
Length = 491
Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats.
Identities = 200/509 (39%), Positives = 328/509 (64%), Gaps = 24/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++D+DVV + ++ A + + D+RV I+ E+G+ FR
Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVDVRVAIDRESGEHETFRRWL 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ QI L A+++D I++ V + + ++FGR+ Q+AKQVI+Q++R+
Sbjct: 64 VVPDDAGLQEPDKQILLFEAKEQDADIEVDDFVEEQIESVEFGRIGAQAAKQVILQRIRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ ++ D+ ++++GT+KR + +IV+ G + ++ RD+ I +ENLR GDRV++
Sbjct: 124 AEREQILNDYLDRGEKVMTGTIKRADKKGLIVETGRVEALLARDQMIPKENLRTGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI +V R RGPQ+ LSRT P+F++KLF EVPE+ G++++KA +RDPG RAK+AV +
Sbjct: 184 YILNVDRTARGPQIELSRTCPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+
Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEVGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T E + + ++ + Q FM
Sbjct: 304 KHSMDVVVDEENLAVAIGRSGQNVRLASELTGWQINIMTPAESAQKQAEESSVVRQLFMA 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +L+ EGF+ +EE+A V + E+ IE FDE+T E++ RAR+ L +++
Sbjct: 364 KLDVDEEVADILIEEGFSSLEEVAYVPLQEMLEIEAFDEDTVNELRNRARDVLLTMELAK 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++++ VS++L + G+ ++ L E I+T +DLA +VD+L+ +
Sbjct: 424 EERVE--KVSQDLRDLEGLTPELIGKLAEGNIQTRDDLAELAVDELVEMT---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513
G ++Q +++I+ AR W
Sbjct: 472 -------GVDEEQAKALIMKAREH--WFS 491
>gi|83644100|ref|YP_432535.1| transcription elongation factor NusA [Hahella chejuensis KCTC 2396]
gi|83632143|gb|ABC28110.1| N utilization substance protein A [Hahella chejuensis KCTC 2396]
Length = 497
Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats.
Identities = 199/515 (38%), Positives = 326/515 (63%), Gaps = 23/515 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFR 64
E+L + +AV+ EK +D+DV+ + ++ A + Y +DIRV+I+ +TG+ FR
Sbjct: 2 NKEILLVVEAVSNEKGVDKDVIFEAIELALATATKKRYEDEEADIRVDIDRKTGEYQAFR 61
Query: 65 LLEVVEEVENYT--CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
VV+ +++L+ + + G + + + FGR+ Q+AKQ+I+QKV
Sbjct: 62 RWLVVDNDAVPALGTELTLEEVHESGLDLKPGDTHEEEVEAVAFGRIGAQAAKQIIVQKV 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181
REAER + +++KVG++++G VK+V N+IVDLG N++ ++ +D+ ISRE R GDR
Sbjct: 122 REAERTKIVDSYREKVGDLVNGVVKKVTRDNIIVDLGANAEALLPKDQLISRETYRVGDR 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++ + D+R + RGPQ++LSR Q +++LF +EVPEI ++++KA +RDPGSRAK+AV
Sbjct: 182 VRALLLDIRMDNRGPQLILSRACSQMLIELFRIEVPEIAEEVIEIKAAARDPGSRAKIAV 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
++D IDPVGACVGMRGSRVQAV +EL +E+IDIV+W + A VINA+ PA V +++
Sbjct: 242 KTNDGRIDPVGACVGMRGSRVQAVSSELGNERIDIVLWDDNPAQLVINAMAPAEVASIIM 301
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED ++V V ++ L++AIGR GQNV+LAS++TGW I+++TEE+ ++++F
Sbjct: 302 DEDSHTMQVAVSEDNLAMAIGRSGQNVKLASEMTGWEINVLTEEQAGQQQEEEFRRYVDC 361
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F+ + V+E +A +L +EGF +EE+A V + E+ +I+ FDE+ E++ RA+ L
Sbjct: 362 FIDQLGVEEDLAEVLASEGFTSLEEVAYVPMEEMLAIDDFDEDLVTELRKRAKNVLINQA 421
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ ++++ + +E+L ++ G+D + L GI TMEDLA SVDDLL E
Sbjct: 422 LASEEQLEKAEPAEDLLNMEGMDRHLAFVLASKGIVTMEDLAEQSVDDLLDIDE------ 475
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
+++ +I+ AR W E+++
Sbjct: 476 -----------VDEERAAQLIMTARKP--WFEEQQ 497
>gi|90409004|ref|ZP_01217134.1| transcription elongation factor NusA [Psychromonas sp. CNPT3]
gi|90309889|gb|EAS38044.1| transcription elongation factor NusA [Psychromonas sp. CNPT3]
Length = 500
Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats.
Identities = 198/518 (38%), Positives = 315/518 (60%), Gaps = 22/518 (4%)
Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
N E+L + +AV+ EK + R+ + + ++ A + Y ++RVEI+ ETG F
Sbjct: 1 MNNKEILLVVEAVSNEKGLPREAIFEALESALAIATKKKYEMEIEVRVEIDRETGTFETF 60
Query: 64 RLLEVVE---EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
R V+ E+EN +++ + A P I IG + D +P + F R+ Q+AKQVI+Q
Sbjct: 61 RRWLVLAPDAEMENSCAEMTYEAAVYDQPEIQIGEFIEDDIPSVTFDRITTQTAKQVIVQ 120
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPG 179
KVREAER + ++ ++ GE+++G VKR+ ++++DLG + + VI RDE + REN RPG
Sbjct: 121 KVREAERAQVVEQYIEQKGELVTGVVKRMTRDSILLDLGGNAEAVIFRDEMLPRENFRPG 180
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
DR++ +YDVR E RG Q+ ++RT P+ +++LF +EVPEI ++ + A +RDPGSRAK+
Sbjct: 181 DRLRGLLYDVRPEARGAQLFMTRTQPEMLIELFRLEVPEIAEEMIDLMAAARDPGSRAKI 240
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV S+D IDP+GACVGMRG+RVQA+ +EL E++DI++W +SA F INA+ PA V +
Sbjct: 241 AVKSNDQRIDPIGACVGMRGARVQAISSELGGERVDIILWDDNSAQFAINAMSPAEVVSI 300
Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
V+DED +++ V +E L+ AIGR GQN+RLASQLTGW ++++T + Q + +
Sbjct: 301 VVDEDSHSMDIAVEEENLAQAIGRNGQNIRLASQLTGWELNVMTVAQLQEKHQAEADSVI 360
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
F +A+ +D A +LV EGF +EE+A V ++E+ I+G DE E++ RA+ L
Sbjct: 361 GVFTKALEIDADFAAVLVDEGFTSLEEIAYVPVTELLEIDGLDENMVDELRTRAKNVLAT 420
Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479
+ ++ I +E+L ++ G+D+ + GI T+EDLA +VDDL+ E
Sbjct: 421 KALAAEENIEGAKPAEDLLALEGLDAHLAYVFASKGIITLEDLAEQAVDDLIDIEE---- 476
Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517
+++ ++I+ AR + W E
Sbjct: 477 -------------LNEEKAGTLIMAAR-NICWFSNETE 500
>gi|332992817|gb|AEF02872.1| transcription elongation factor NusA [Alteromonas sp. SN2]
Length = 497
Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats.
Identities = 206/514 (40%), Positives = 314/514 (61%), Gaps = 22/514 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L +A+AV+ EK + R+ + + +I A + ++RV I+ +GD FR
Sbjct: 2 NKEILLVAEAVSNEKQVPREKIFEALEFAIASATKKKNEGDIEVRVSIDRTSGDFDTFRR 61
Query: 66 LEVVEEV---ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
++ + EN +I+L A+ +P + +G V D + + F R+ Q+AKQVI+QKV
Sbjct: 62 WLIIPDDQEQENPFAEITLSAAQVEEPELQLGDYVEDQIESIKFDRITTQTAKQVIVQKV 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
REAER + E++DKVGE+++GTVK+V N+I+DLGN+ +GVI RD+ + RE RPGDR
Sbjct: 122 REAERAQMIAEYEDKVGELVTGTVKKVNRDNIIIDLGNNAEGVIYRDDMLPRETFRPGDR 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V+ +Y +R E RG Q+ +SRTHP +V+LF +EVPEI +++KA +RDPGSRAK+AV
Sbjct: 182 VRGLLYVIRPEARGAQLFISRTHPDMLVELFRLEVPEIAEETLEIKAAARDPGSRAKIAV 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
++D +DPVGACVGMRGSRVQAV EL E++DIV+W +SA FVINA+ PA V +V+
Sbjct: 242 KTNDKRLDPVGACVGMRGSRVQAVSGELGGERVDIVLWDENSAQFVINAMAPAEVASIVV 301
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED ++V V + L+ AIGR GQNVRLASQLTGW ++++T E+ + +++ +
Sbjct: 302 DEDSHMMDVAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVEDLNKKHEEENAKVLNI 361
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F ++VDE A +LV EGF +EE+A V SE+ +I+G DE+T E++ RAR +L
Sbjct: 362 FTAGLDVDEEFAAMLVDEGFTTLEEVAYVPASELLAIDGLDEDTVEELRNRARAFLTTRA 421
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ ++ + +E L + G+ + L GI +E+LA D++ E
Sbjct: 422 LANEESLEGAEPTEALLGLEGMSKHVAYVLASRGITDLEELAEQGTDEISDIDE------ 475
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
+ ++I+ AR + W +E
Sbjct: 476 -----------LDEATAGALIMAAR-NIVWFNEE 497
>gi|163857446|ref|YP_001631744.1| transcription elongation factor NusA [Bordetella petrii DSM 12804]
gi|163261174|emb|CAP43476.1| N utilization substance protein A [Bordetella petrii]
Length = 492
Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats.
Identities = 205/511 (40%), Positives = 311/511 (60%), Gaps = 25/511 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++ R+VV + ++ A + + ++IRV I+ ETG FR
Sbjct: 4 EILLLVDALAREKNVTREVVFGALESALASAMKKRFKEDAEIRVAIDRETGSHEGFRRWL 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ Q L A + P+I +G + +PL P++FGR+ Q+AKQ I+QK+R+
Sbjct: 64 VVPDEAGLQEPDKQEMLSDALELVPNIQVGEYIEEPLEPIEFGRIGAQAAKQAILQKIRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ +F D+ IISGT+KR++ G++IV+ G + + R E I +EN R GDR+++
Sbjct: 124 AEREQVLNDFLDRGETIISGTIKRMDKGDIIVETGKIEARLPRSEMIPKENFRVGDRLRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
++ V RG QV+LSRT P+F+ +LF EVPEI G++++KA +RDPG RAK+AV +
Sbjct: 184 FVLRVDHAARGQQVILSRTSPEFIRQLFENEVPEIEQGLLEIKAAARDPGVRAKIAVVAY 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVGMRGSRV AV EL E++DIV+WS D A FVI AL PA V +V+DED
Sbjct: 244 DKRIDPIGTCVGMRGSRVTAVRNELGGEQVDIVLWSEDPAQFVIGALAPANVESIVVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V +E L AIG +GQNVRLAS+LTGW I+I+T EE ++ + FM
Sbjct: 304 KHAMDVVVDEENLPKAIGAKGQNVRLASELTGWQINIMTPEESLSRQETERAGLRAAFMS 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR L I
Sbjct: 364 KLDVDEEVADILIDEGFTGIEEIAYVPMQELLEIEAFDEDTINELRARARNALLTEAIAQ 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
+++ L +++L + G+ ++ L E + T +DLA + D+L S
Sbjct: 424 EER---LETAQDLLELEGMTPELAAKLAERQVLTRDDLAELATDELAEIS---------- 470
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G + Q +I+ AR W ++E
Sbjct: 471 -------GLDEQQASELIMRARAH--WFDEE 492
>gi|113868282|ref|YP_726771.1| transcription elongation factor NusA [Ralstonia eutropha H16]
gi|113527058|emb|CAJ93403.1| transcription pausing factor L [Ralstonia eutropha H16]
Length = 491
Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats.
Identities = 209/509 (41%), Positives = 334/509 (65%), Gaps = 24/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++D+DVV + ++ A + + DIRV I+ E+G+ FR
Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVDIRVAIDRESGEHETFRRWL 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ QI L ARD +PSI++G + + ++FGR+ Q+AKQVI+Q++R+
Sbjct: 64 VVPDELGLQEPDKQILLFEARDENPSIELGDFIEQQIESVEFGRIGAQAAKQVILQRIRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ ++ D+ +I++GTVKR + +IV+ G + ++ RD+ I +ENLR GDRV++
Sbjct: 124 AEREQILNDYLDRGEKIMTGTVKRADKKGLIVESGRVEALLARDQIIPKENLRTGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI +V R RGPQ+ LSRT P+F++KLF EVPE+ G++++KA +RDPG RAK+AV +
Sbjct: 184 YILNVDRAARGPQIELSRTAPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+
Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEIGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V +E L+++IGR GQNVRLA++LTGW I+I+T+EE + + ++ + + FM
Sbjct: 304 KHSMDVVVDEENLAVSIGRSGQNVRLATELTGWQINIMTQEESAQKQAEESDVVRKLFMS 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +L+ EGF+ +EE+A V ISE+ IE FDE+T E++ RAR+ L +++
Sbjct: 364 KLDVDEEVADILIEEGFSTLEEVAYVPISEMMEIEAFDEDTVNELRNRARDALLTMELAR 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ E VS++L S+ G++ ++ L E I T +DLA +VD+L+ +
Sbjct: 424 EEKVEE--VSQDLRSLDGLNPELIGKLAEGDIHTRDDLAELAVDELVEMT---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513
G +++ +S+I+ AR W
Sbjct: 472 -------GVSEEEAKSLIMKAREH--WFN 491
>gi|127513756|ref|YP_001094953.1| transcription elongation factor NusA [Shewanella loihica PV-4]
gi|126639051|gb|ABO24694.1| NusA antitermination factor [Shewanella loihica PV-4]
Length = 499
Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats.
Identities = 199/515 (38%), Positives = 317/515 (61%), Gaps = 23/515 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L +A+AV+ EK++ R+ + + ++ A + Y ++RV I+ +TG+ FR
Sbjct: 2 NKEILLVAEAVSNEKAVPREKIFEALEIALATATKKKYEGDIEVRVAIDRKTGEYETFRR 61
Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
VVE+ +EN +I+L+ AR +P I +G + D + + F R+ Q+AKQVI+QK
Sbjct: 62 WMVVEDEGQALENPFREITLEAARYENPEIQVGEYIEDEIESVVFDRITTQTAKQVIVQK 121
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180
VREAER + +F +K GE+I+G VK+ +V+VDLGN+ D V+ +++ ISRE+ RPGD
Sbjct: 122 VREAERAQIVDQFLEKEGELITGVVKKSNRESVVVDLGNNADAVLFKEDLISRESFRPGD 181
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
RV++ +Y VR E RG Q+ L+RT P +++LF +EVPEI + ++++ +RDPGSRAK+A
Sbjct: 182 RVRALLYAVRPEARGAQLFLTRTKPDMLIELFRVEVPEIADEMIEIMGAARDPGSRAKIA 241
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A FVINA+ PA V ++
Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQFVINAMAPADVASII 301
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DED +++ V + L+ AIGR GQNVRLA+QL+GW ++++T E+ Q + +
Sbjct: 302 VDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLSGWELNVMTVEDMQAKHQAESAKIVN 361
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
F+ A++VDE A +L EGF +EE+A V SE+ I+GFDEE ++ RA+ +
Sbjct: 362 LFVSALDVDEDFAQVLADEGFTSLEEVAYVPESELLEIDGFDEEIVEALRERAKAAISTR 421
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ ++ + SE+L ++ G++ + L G+ T+EDLA +DD
Sbjct: 422 ALASEEALDGAEPSEDLLALEGLERHLAYVLASKGVITLEDLAEQGIDD----------- 470
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
+ +++ +I+ AR + W +E
Sbjct: 471 ------LIEIEELTEEKAGELIMAAR-NICWFGEE 498
>gi|148976708|ref|ZP_01813395.1| transcription elongation factor NusA [Vibrionales bacterium SWAT-3]
gi|145964059|gb|EDK29317.1| transcription elongation factor NusA [Vibrionales bacterium SWAT-3]
Length = 495
Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats.
Identities = 202/512 (39%), Positives = 320/512 (62%), Gaps = 19/512 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + ++RVEI+ +TGD FR
Sbjct: 2 NKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKSELEIEVRVEIDRKTGDFETFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
E VE VEN T +ISL+ A+ DP I++GG + D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WEAVEVVENPTKEISLEAAKYDDPEIELGGFIEDDIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER + +F D GE+++G VK+V +I+DLGN+ + VI RD+ + REN RPGDRV+
Sbjct: 122 ERAQIVEQFIDNEGELVTGVVKKVNRDTIILDLGNNAEAVILRDDQLPRENFRPGDRVRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y V+ E RG Q+ ++R+ P+ + +LF +EVPEI ++++K +RD GSRAK+AV ++
Sbjct: 182 LLYAVKPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKGAARDAGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V + L+ AIGR GQNVRLASQLTGW ++++T E+ Q++ + FM+
Sbjct: 302 AHSMDIAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVEDLQKKHQEEAVASIENFMK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++++E A LLV EGF+ +EE+A V ++E+ ++G DE E++ RA++ L + +
Sbjct: 362 HLDIEEDFAQLLVEEGFSTLEEVAYVPVNELLEVDGLDEGIVEELRNRAKDALTTLALAK 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + +E+L ++ G++ ++ L G+ T+EDLA VD+L G
Sbjct: 422 EETFDGVEPAEDLLALEGLEREMAYKLAAKGVATLEDLADQGVDELEGIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
++ +I+ AR + W E+
Sbjct: 472 -------DLTAERAGELIMAAR-NICWFGDEE 495
>gi|254787150|ref|YP_003074579.1| transcription elongation factor NusA [Teredinibacter turnerae
T7901]
gi|237684737|gb|ACR12001.1| transcription elongation / termination protein, N utilization
substance A [Teredinibacter turnerae T7901]
Length = 496
Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats.
Identities = 209/514 (40%), Positives = 328/514 (63%), Gaps = 22/514 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+ E+L +ADAV+ EK +DRDV+ + ++ A + Y SDI V I+ TGD R
Sbjct: 2 KKEILLVADAVSNEKGVDRDVIFQAIELALATATKKRYDEDSDIEVLIDRRTGDYVTKRR 61
Query: 66 LEVVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
VV++ Q +L+ A ++D ++ G V + + ++FGR+A Q+AKQVI+QKVR
Sbjct: 62 WLVVDDDTLAELGTQFTLEEAHEKDTALVAGDVYEEVVENVEFGRIAAQTAKQVIVQKVR 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182
EAER + +++ +VGE++SG+VK+V N+IVDLGN+ +G++ R+E + RE R DRV
Sbjct: 122 EAERAQIVDQYRSRVGELVSGSVKKVTRDNIIVDLGNNAEGLLPREELVGREVFRMNDRV 181
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
++ + DVR E RGPQ+ LSR + +++LF +EVPEI ++ +K +RDPGSRAK+AV
Sbjct: 182 RALLMDVRPEARGPQLYLSRACSEMLIELFKIEVPEIAEEVIALKGAARDPGSRAKIAVS 241
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
++D IDPVGACVGMRGSRVQAV EL +E+IDIV+W + A FVINA+ PA + +VLD
Sbjct: 242 TNDGRIDPVGACVGMRGSRVQAVSNELGNERIDIVLWDDNPAQFVINAMAPAEIESIVLD 301
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
E+ +++ V ++ L+ AIGR GQNVRLAS+LTGW I++++ E+ + + ++ + F
Sbjct: 302 EETHAMDLAVDEDNLAQAIGRGGQNVRLASELTGWEINVMSVEQWNEKQAQEAGSSKEVF 361
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
M+A++VDE +A +LV EGF +EE+A V + E +IEGFDE+ A E++ RA++ L +
Sbjct: 362 MEALDVDEDVADVLVDEGFTTLEEVAYVPLEEFLAIEGFDEDIANELRSRAKDALLTQAL 421
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482
+++ +E+L ++ G+D+++ L G+ MEDLA SVD+L+
Sbjct: 422 ATEEQTVGQEPAEDLLTMEGMDNELAFVLASRGVTCMEDLAEQSVDELMEID-------- 473
Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
G +++ ++I+ AR W +
Sbjct: 474 ---------GMDEERAAALIMKAREP--WFADGE 496
>gi|37528349|ref|NP_931694.1| transcription elongation factor NusA [Photorhabdus luminescens
subsp. laumondii TTO1]
gi|36787787|emb|CAE16902.1| N utilization substance protein A (nusA protein) (L factor)
[Photorhabdus luminescens subsp. laumondii TTO1]
Length = 502
Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats.
Identities = 211/518 (40%), Positives = 316/518 (61%), Gaps = 26/518 (5%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQDIDVRVSIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVEEV T +I+L+ AR +P ID+G D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLVVEEVTQPTREITLEAARFEEPEIDLGSYTEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F+++ GEII+ VK+V N+ +DLGN+ + VI R++ + REN RPGDRV+
Sbjct: 122 ERAMVVDQFREQQGEIITSVVKKVNRENITLDLGNNAEAVILREDMLPRENFRPGDRVRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+YDVR E RG Q+ +SR+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYDVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNE 357
++V V L+ AIGR GQNVRLA+QL W ++++T EE Q + +
Sbjct: 302 KCTMDVAVESNNLAQAIGRNGQNVRLAAQLLKKHRGDDKWELNVMTAEELQAKHQAEAHA 361
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
F + +++DE A +LV EGF+ +EELA V I E+ IEG DEET ++ RA+ L
Sbjct: 362 SIDTFTKHLDIDEEFATVLVEEGFSTLEELAYVPIKELLEIEGLDEETIEVLRERAKAAL 421
Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477
+++ ++ + + +EEL ++ G++ + L GI T+EDLA +DDL
Sbjct: 422 TTLELAQKESLSDKQPTEELLNLTGMNRTLAFDLAARGICTLEDLAEQGIDDLSDIE--- 478
Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ +I+ AR + W +
Sbjct: 479 --------------GLNDEKTGELIMAAR-NICWFGDD 501
>gi|126664888|ref|ZP_01735872.1| transcription elongation factor NusA [Marinobacter sp. ELB17]
gi|126631214|gb|EBA01828.1| transcription elongation factor NusA [Marinobacter sp. ELB17]
Length = 497
Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats.
Identities = 202/512 (39%), Positives = 322/512 (62%), Gaps = 23/512 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66
E+L + ++V+ EK +++DV+ + ++ AA+ + +DIRV I+ TG+ FR
Sbjct: 4 EILLVVESVSNEKGVEKDVIFEAIELALATAAKKRFDDEDADIRVSIDRRTGEYDTFRRW 63
Query: 67 EVVEEVENYT--CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV+ +++ + A D P + G + + + + FGR+ Q+AKQ+I QKVRE
Sbjct: 64 LVVDNDAVPALGTELTFQEAEDISPDLQPGDMHEERIDSVAFGRIGAQAAKQIIFQKVRE 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVK 183
AER + ++ +VGE++SGTVK+V NVIVDLGN+ + ++ R+ I+RE R GDRV+
Sbjct: 124 AERTKIVDSYRGRVGELVSGTVKKVTRDNVIVDLGNNAEALLPREHLIARETFRMGDRVR 183
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
S + ++R + RGPQ++LSR+ + +++LF +EVPEI +++++ +RDPGSRAK+AV +
Sbjct: 184 SLLLEIRTDHRGPQLILSRSDSKMLIELFRIEVPEIAEELIEIRGAARDPGSRAKIAVKT 243
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
+D IDPVGACVGMRGSRVQAV EL E++DIV+W + A VINA+ PA V +V+DE
Sbjct: 244 NDRRIDPVGACVGMRGSRVQAVSNELNGERVDIVLWDDNPAQLVINAMAPAEVASIVMDE 303
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
D ++V V + L+ AIGR GQNVRLA++LTGWT++++TEEE ++++ + F
Sbjct: 304 DRHTMDVAVAADNLAQAIGRNGQNVRLATELTGWTLNVMTEEEAGERQEQEQGRLLEHFT 363
Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423
+ +++DE A +L+ EGF+ +EE+A + + E+ +IEGFDEET E++ RA++ L +
Sbjct: 364 KHLDIDEEFAGVLIDEGFSSIEEVAYIPMEEMLAIEGFDEETVTELRKRAKDALLNQALA 423
Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483
++ + +E+L ++ GID + L GI+TMEDLA SV DLL
Sbjct: 424 NEEALDGAEPAEDLLAMEGIDRGLAFKLAGMGIRTMEDLAEQSVGDLLEIE--------- 474
Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G +++ +I+ AR W E +
Sbjct: 475 --------GMNEERAGQLIMTARAP--WFEDQ 496
>gi|52425500|ref|YP_088637.1| transcription elongation factor NusA [Mannheimia succiniciproducens
MBEL55E]
gi|52307552|gb|AAU38052.1| NusA protein [Mannheimia succiniciproducens MBEL55E]
Length = 501
Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats.
Identities = 206/516 (39%), Positives = 316/516 (61%), Gaps = 26/516 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L A+AV+ EK + R+ + + +I + + Y D+RV IN +TG+ FR
Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIALSTKKKYEQEIDVRVAINQKTGEFDTFRRWL 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV N T +I+L+ A+ DP I +G V D + + F R+ +Q+A+QVI K+REAER
Sbjct: 64 VVDEVVNPTKEITLEAAQFEDPDIQLGDYVEDQIDSVAFDRITMQTARQVISTKIREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-------DGVIRRDETISRENLRPGD 180
++ +F+ + G+I++GTVK+V ++I+DL + + VI R++ + REN RPGD
Sbjct: 124 NKVVEQFRSEEGKIVTGTVKKVTRDSIILDLTGNKEDPAKAEAVITREDMLPRENFRPGD 183
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
RV+ +Y V E +G Q+ ++R P + +LF +EVPEI ++++K SRD G RAK+A
Sbjct: 184 RVRGVLYKVNPESKGAQLFVTRAKPVMLEELFRLEVPEIGEELIEIKGASRDAGLRAKIA 243
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S+D IDPVGACVGMRGSRVQA+ EL E++DIV+W + A FVINA+ PA V +V
Sbjct: 244 VKSNDKRIDPVGACVGMRGSRVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVNSIV 303
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DED +++ V +E L+ AIGR GQNVRLA+QLTGWT++++T EE Q + N+
Sbjct: 304 VDEDNHSMDIAVEQENLAQAIGRNGQNVRLATQLTGWTLNVMTTEELQQKHQAEDNKVLN 363
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEG 419
FM ++ +DE A LL+ EGF+ +EELA V +SE+ +I+G DE+ E+Q RA++ L
Sbjct: 364 LFMTSLELDEDFAQLLIDEGFSSLEELAYVPVSELTAIDGLEDEDLVEELQNRAKDALTA 423
Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479
+ ++ +++ V + L ++ G++ I L E IKT+E+LA VDDL E
Sbjct: 424 KAVAEEEALKQAEVEDRLLNLEGMERHIAFRLAEKNIKTLEELAEQGVDDLADIEE---- 479
Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
++ +I+ AR + W E
Sbjct: 480 -------------LSAEKAADLIMAAR-NICWFGDE 501
>gi|114321098|ref|YP_742781.1| transcription elongation factor NusA [Alkalilimnicola ehrlichii
MLHE-1]
gi|114227492|gb|ABI57291.1| NusA antitermination factor [Alkalilimnicola ehrlichii MLHE-1]
Length = 498
Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats.
Identities = 222/516 (43%), Positives = 329/516 (63%), Gaps = 25/516 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + +A + EK +DR+V+ + ++ A R + D RVE+N TGD S FR
Sbjct: 4 EILLVVEATSNEKGVDREVIFEAIEAALASATRKRHPEDIDARVEVNRNTGDYSTFRRWW 63
Query: 68 VVE---EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VVE +VE+ QI+L+ AR R P I++G + +P+ ++FGR+A Q+AKQVI+QKVRE
Sbjct: 64 VVESDEDVESPARQITLEEARQRQPDIEVGECLEEPMESVEFGRIAAQTAKQVIVQKVRE 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVK 183
AER + F+D++GE+++GTVKR+E G+VI+DLG + + +I R+ I RE +R DR++
Sbjct: 124 AERAKVVEAFQDRIGELVTGTVKRLERGSVIMDLGGNAEALIPREAMIPREAVRREDRLR 183
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
Y+ DVR E RGPQ+ +SRT P+F+V+LF +EVPE+ ++++ +RDPG RAK+AV +
Sbjct: 184 GYLKDVRPEPRGPQLFVSRTAPEFLVELFKLEVPEVGQELIEIMGAARDPGVRAKIAVRA 243
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
D IDPVGACVGMRGSRVQAV EL E+IDI++W + A FVINAL PA V +V+DE
Sbjct: 244 LDPRIDPVGACVGMRGSRVQAVSNELAGERIDIILWDDNPAQFVINALAPAEVESIVVDE 303
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
D +++ V +EQLS AIGR GQNVRLAS+LTGW ++++T EE Q++ + Q F
Sbjct: 304 DRHSMDIAVAEEQLSQAIGRGGQNVRLASELTGWELNVMTAEEAEAKNQEEAAQYQQLFQ 363
Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423
+ ++VDE IA +LV EGF+ +EE+A V +E+ +E FDE+ E++ RAR+ L
Sbjct: 364 EKLDVDEEIAAILVQEGFSSLEEVAYVPAAELLEVEEFDEDIVDELRARARDVLVSEAEE 423
Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483
+ E +E+L ++ G+D + AL G+ TMEDLA SVD+L+
Sbjct: 424 RESAGTE--PAEDLLTMEGMDEDLARALAARGVCTMEDLAEQSVDELMEIE--------- 472
Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVAD 519
G + + +I+ AR W ++ +
Sbjct: 473 --------GMDETRAGQLIMKAREP--WFADQQDDE 498
>gi|299067340|emb|CBJ38537.1| transcription termination/antitermination L factor [Ralstonia
solanacearum CMR15]
Length = 491
Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats.
Identities = 199/509 (39%), Positives = 329/509 (64%), Gaps = 24/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++D+DVV + ++ A + + ++RV I+ E+G+ FR
Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVEVRVAIDRESGEHETFRRWL 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ QI L AR+++PS+++ + + + ++FGR+ Q+AKQVI+Q++R+
Sbjct: 64 VVPDDAGLQEPDKQILLFEAREQNPSVNLDEFIEEQIESVEFGRIGAQAAKQVILQRIRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ ++ D+ +I++GT+KR + +IV+ G + ++ RD+ I +ENLR GDRV++
Sbjct: 124 AEREQILNDYLDRGEKIMTGTIKRADKKGLIVESGRVEALLARDQMIPKENLRTGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI +V R RGPQ+ LSRT P+F++KLF EVPE+ G++++KA +RDPG RAK+AV +
Sbjct: 184 YILNVDRTARGPQIELSRTCPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+
Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEVGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V +E L++AIGR GQNVRLAS+LT W I+I+T E + + ++ + + FM+
Sbjct: 304 KHSMDVVVDEENLAVAIGRSGQNVRLASELTNWQINIMTPAESAQKQAEESSTVRKLFME 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR+ L +++
Sbjct: 364 KLDVDEEVADILIEEGFTSLEEVAYVPLQEMLEIEAFDEDTVNELRNRARDVLLTMELAK 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ VS++L + G+ ++ L E I+T +DLA +VD+L+ +
Sbjct: 424 EEKVE--KVSQDLRDLEGLTPELIGKLAEGNIQTRDDLAELAVDELVDMT---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513
G ++Q +++I+ AR W
Sbjct: 472 -------GVDEEQAKALIMKAREH--WFS 491
>gi|332141181|ref|YP_004426919.1| transcription elongation factor NusA [Alteromonas macleodii str.
'Deep ecotype']
gi|327551203|gb|AEA97921.1| transcription elongation factor NusA [Alteromonas macleodii str.
'Deep ecotype']
Length = 498
Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats.
Identities = 202/515 (39%), Positives = 315/515 (61%), Gaps = 22/515 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L +A+AV+ EK + R+ + + +I A + ++RV I+ +GD FR
Sbjct: 2 NKEILLVAEAVSNEKQVPREKIFEALEFAIASATKKKNEGEIEVRVSIDRTSGDFDTFRR 61
Query: 66 LEVVEEV---ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
V+ + EN +I++ A+ +P I +G V + + + F R+ Q+AKQVI+QKV
Sbjct: 62 WLVIPDDQEQENPFAEITISAAQIDEPEIQLGDYVEEQIESIKFDRITTQTAKQVIVQKV 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
REAER + E++DKVGE+++GTVK+V N+I+DLGN+ +GVI RD+ + RE RPGDR
Sbjct: 122 REAERQQMIAEYEDKVGELVTGTVKKVNRDNIIIDLGNNAEGVIYRDDMLPRETFRPGDR 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V+ +Y +R E RG Q+ +SRTHP +V+LF +EVPEI +++K+ +RDPGSRAK+AV
Sbjct: 182 VRGLLYVIRPEARGAQLFISRTHPDMLVELFRLEVPEIAEETLEIKSAARDPGSRAKIAV 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
++D +DPVGACVGMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +V+
Sbjct: 242 KTNDKRLDPVGACVGMRGSRVQAVSGELGGERVDIVLWDENPAQFVINAMAPAEVASIVV 301
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED ++V V + L+ AIGR GQNVRLASQLTGW ++++T E+ + +++ +
Sbjct: 302 DEDSNNMDVAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVEDLNKKHEEENAKVLNL 361
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F +++DE A +LV EGF +EE+A V SE+ ++EG DE+ E++ RAR +L
Sbjct: 362 FTAGLDIDEEFASVLVDEGFTTLEEVAYVPASELLAVEGLDEDMVEELRNRARAFLTTRA 421
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ ++ + +E L ++ G+ + L G+ +E+LA DD+ E
Sbjct: 422 LANEESLEGAEPTEALLNLEGMSKHVAYVLASRGVIDLEELAEQGTDDISDIDE------ 475
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
+++ +I+ AR + W +E+
Sbjct: 476 -----------LDEEKAGELIMAAR-NIVWFSEEE 498
>gi|238897563|ref|YP_002923242.1| transcription pausing; L factor [Candidatus Hamiltonella defensa
5AT (Acyrthosiphon pisum)]
gi|229465320|gb|ACQ67094.1| transcription pausing; L factor [Candidatus Hamiltonella defensa
5AT (Acyrthosiphon pisum)]
Length = 494
Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats.
Identities = 205/512 (40%), Positives = 315/512 (61%), Gaps = 21/512 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EKS+ R+ + + ++ A + Y ++R++IN +TGD FR
Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALESALATATKKKYDQDVEVRIKINRKTGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
V+ V + T +I+L+ A+ +D I +G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLAVDIVTSPTREITLEAAQFQDSQIQLGDYVEDQIESVIFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F+ G+I++G VK+ N+ +DLGN+ +G+I R++ + REN+R GDR++
Sbjct: 122 ERAMLVEQFRQHQGKIVTGVVKKATRENIYLDLGNNTEGIIGREDMLPRENIRTGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+YDVR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDP SRAK+AV S+
Sbjct: 182 VLYDVRPEARGAQLFISRSRPEMLIELFRIEVPEIGEELIEIKAAARDPASRAKIAVKSN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV TEL E+IDI++W + FVINA+ PA V V +DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIILWDDNPVQFVINAMAPAEVVSVTIDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V L+ AIGR GQNVRLAS+L+GW ++++T EE Q + + F+Q
Sbjct: 302 KHTMDIAVEATHLAQAIGRNGQNVRLASRLSGWELNVMTAEELQSKNQAEVDSIVHTFIQ 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+N+D+ A +L+ EG + +EEL CV I E+ IEG DEET ++ RA++ L + +
Sbjct: 362 HLNIDKEFAEVLIEEGLSSLEELVCVPIEELLEIEGLDEETVNALRDRAKKTLTTLALA- 420
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
+ S++L ++P +DSKI L +GI T+EDLA S+DDL
Sbjct: 421 -ENFSGNSPSDDLLNLPNMDSKIAFRLSASGISTLEDLAEQSIDDLADIE---------- 469
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
G D+ +I+ AR + W +
Sbjct: 470 -------GLSNDKAGELIMAARG-ICWFSDDN 493
>gi|212634073|ref|YP_002310598.1| transcription elongation factor NusA [Shewanella piezotolerans WP3]
gi|212555557|gb|ACJ28011.1| Transcription termination factor NusA [Shewanella piezotolerans
WP3]
Length = 499
Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats.
Identities = 196/515 (38%), Positives = 315/515 (61%), Gaps = 23/515 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L +A+AV+ EK + R+ + + ++ A + Y ++RV I+ +TG FR
Sbjct: 2 NKEILLVAEAVSNEKGVPREKIFEALEIALATATKKKYEGDIEVRVAIDRKTGGYETFRR 61
Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
VVE+ +EN +I+L+ A DP I++GG + D + + F R+ Q+AKQVI+QK
Sbjct: 62 WMVVEDTGEPLENPFREITLEAAVYDDPEIELGGFIEDEIDSVAFDRITTQTAKQVIVQK 121
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGD 180
VREAER + +F+D+ GE+I G VK+ +V+VDLG N+DGV+ +++ ISRE+ RPGD
Sbjct: 122 VREAERAQIVDQFRDREGELIVGVVKKSNRESVVVDLGSNADGVLFKEDLISRESFRPGD 181
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
RV++ +Y VR E RG Q+ L+RT + +++LF +EVPEI + ++++ +RDPGSRAK+A
Sbjct: 182 RVRALLYSVRPEARGAQLFLTRTKSEMLIELFRVEVPEIQDEMIEIMGAARDPGSRAKIA 241
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VIN + PA V ++
Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINCMAPADVASII 301
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DED +++ V + L+ AIGR GQN+RLA+QL+GW ++++T ++ Q + +
Sbjct: 302 VDEDNHSMDIAVEADSLAQAIGRNGQNIRLATQLSGWELNVMTVDDMKAKHQAESAKVVN 361
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
F+++++VD A +L EGF +EE+A V SE+ IEGFDE+ ++ RA+ +
Sbjct: 362 LFIESLDVDSEFAQVLADEGFTSLEEIAYVPSSELLEIEGFDEDIVESLRERAKAAISTR 421
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ ++ + SE+L ++ G+D + + G+ T+EDLA +DDL+ E
Sbjct: 422 ALATEEALDGAEPSEDLLALEGLDRHLAFVMASKGVITLEDLAEQGIDDLIEIEELTEEK 481
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
+I+ AR + W +E
Sbjct: 482 -----------------AGELIMAAR-NICWFGEE 498
>gi|256821530|ref|YP_003145493.1| NusA antitermination factor [Kangiella koreensis DSM 16069]
gi|256795069|gb|ACV25725.1| NusA antitermination factor [Kangiella koreensis DSM 16069]
Length = 497
Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats.
Identities = 206/514 (40%), Positives = 323/514 (62%), Gaps = 22/514 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK + +V+ + ++ A + +G D+RV+I+ TGD +RL
Sbjct: 3 NKEILLVVEAVSNEKDVQPEVIFGAIEAALATATKKKHGVDIDVRVDIDRHTGDYDTYRL 62
Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
VV + VE+ + +L A+ DP I IG V + + ++FGR+A Q+AKQVI+QKVR
Sbjct: 63 WTVVADDAVEDPLTETTLSAAQVEDPEIQIGDYVEEQIESIEFGRIAAQTAKQVIVQKVR 122
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182
EAER + F+D+VG++++G VK+V + +DLG N++ VI+R+E + RE +R GDRV
Sbjct: 123 EAERAKTVEAFRDRVGDLVTGVVKKVTRDYIFIDLGSNAEAVIQREEMMPRETVRTGDRV 182
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
+ +Y + E RGPQ+ +SRT P+ + +LF +EVPEI ++++K +RDPGSRAK+AV
Sbjct: 183 RGLLYAISTENRGPQLFVSRTRPEMLEELFRIEVPEIGEEVIEIKGAARDPGSRAKVAVK 242
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
++D IDPVGACVGMRG+RVQAV EL E+IDIV++ + A +VINA+ PA V +V+D
Sbjct: 243 TNDKRIDPVGACVGMRGARVQAVTGELNGERIDIVLYDDNPAQYVINAMAPAEVVSIVVD 302
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
ED +++ V ++QL+ AIGR GQN+RLAS+LTGW ++++TEE+ + Q + F
Sbjct: 303 EDRRSMDIAVNEDQLAQAIGRNGQNIRLASELTGWELNVMTEEDFATKNQSETESIVSMF 362
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
+ + VDE +A +LV EGF +EE+A V SE+ IEGFDE+ ++ RA++ L I
Sbjct: 363 VADLGVDEDLADILVQEGFTTLEEVAYVPQSEMLEIEGFDEDLVDALKSRAKDVLLTKAI 422
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482
++++ E+ +E+L ++ G+D + L GI TMEDLA SV
Sbjct: 423 ANEEQLEEVEPAEDLLTMDGMDRHLAFVLASKGIVTMEDLAEQSV--------------- 467
Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
D + +++ +I+ AR W E+++
Sbjct: 468 --DELIEIEELDEERAAKLIMTARAP--WFEEQE 497
>gi|332532410|ref|ZP_08408288.1| transcription termination protein NusA [Pseudoalteromonas
haloplanktis ANT/505]
gi|332038053|gb|EGI74500.1| transcription termination protein NusA [Pseudoalteromonas
haloplanktis ANT/505]
Length = 499
Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats.
Identities = 189/514 (36%), Positives = 320/514 (62%), Gaps = 24/514 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L +A+AV+ EK++ ++ + + ++ A + + ++RV I+ +TGD FR +
Sbjct: 4 EILLVAEAVSNEKAVPKEKIFEALEFALATATKKKHDGEIEVRVAIDRKTGDYDTFRRWQ 63
Query: 68 ---VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
V+E+ +EN +I+L+ A+ +P + +G V + + + F R+ Q AKQVI+QKV
Sbjct: 64 IAAVLEDGSLENPYSEITLEAAQVEEPDLQMGDYVEEQIDSIKFDRITTQMAKQVIVQKV 123
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
REAER +KD+ GE+++G VK+ +++DLGN+ + VI RD+ + REN RPGDR
Sbjct: 124 REAERALVVEAYKDQEGELVTGVVKKATRDAIVLDLGNNAEAVIYRDDMLPRENFRPGDR 183
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++ +Y+V+ E RG Q+ ++R+ P+ +++LF +EVPEI +++++A +RDPGSRAK+AV
Sbjct: 184 IRGLLYEVKPEARGAQLFVTRSKPEMLMELFRIEVPEIGEEMIELRAAARDPGSRAKIAV 243
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+D IDP+GACVGMRG+RVQAV +EL E++DIV++ + A FVINA+ PA V +V+
Sbjct: 244 KSNDKRIDPIGACVGMRGARVQAVSSELGGERVDIVLYDDNPAQFVINAMAPAEVASIVM 303
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED +++ V + L+ AIGR GQNVRLASQLTGW ++++T E+ + + ++
Sbjct: 304 DEDTHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVEDMRTKNEAESDKLLNL 363
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F + +++D+ A LL+ EGF+ +EE+A V SE I+G DEET ++ RA++ L
Sbjct: 364 FTENLDIDDEFASLLINEGFSTLEEVAYVPASEFLEIDGLDEETVDLLRSRAKDALTTKA 423
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ ++ + +E+L ++ G++ + + G+ T+EDLA +D+L+ +E
Sbjct: 424 LKTEESLDGAEPAEDLLALEGLERHLAFVMASKGVVTLEDLAEQGIDELVDITE------ 477
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
++ +I+ AR + W E
Sbjct: 478 -----------LSSEKAGELIMAAR-NICWFADE 499
>gi|42144|emb|CAA25200.1| unnamed protein product [Escherichia coli]
Length = 494
Score = 465 bits (1196), Expect = e-128, Method: Composition-based stats.
Identities = 192/511 (37%), Positives = 304/511 (59%), Gaps = 20/511 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F++ GEII+G VK+V N+ +DLGN+ + VI R+++ + +
Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDSCRVKTFALATAFVA 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
R G Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 CSIPFAR-NGGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 240
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 241 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 300
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F +
Sbjct: 301 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 360
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I
Sbjct: 361 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQ 420
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + + +++L ++ G+D + L G+ T+EDLA +DDL
Sbjct: 421 EESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIE---------- 470
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ ++I+ AR + W E
Sbjct: 471 -------GLTDEKAGALIMAAR-NICWFGDE 493
>gi|254490591|ref|ZP_05103777.1| NusA N-terminal domain family [Methylophaga thiooxidans DMS010]
gi|224464335|gb|EEF80598.1| NusA N-terminal domain family [Methylophaga thiooxydans DMS010]
Length = 505
Score = 465 bits (1196), Expect = e-128, Method: Composition-based stats.
Identities = 208/524 (39%), Positives = 323/524 (61%), Gaps = 25/524 (4%)
Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
N E+L + DA++ EK + ++V+ + ++ A R Y D V+I+ TGD F
Sbjct: 1 MNNKEILLVVDAMSNEKGVSKEVIFQAIEAALAMATRKRYEMALDAHVQIDRVTGDYETF 60
Query: 64 RLLEVVEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
R +VE+ +E+ QI+L A + ++GG + +P+ ++FGR+A Q+AKQVI
Sbjct: 61 RQWLIVEDDDEEALESEETQITLSEALKKQDDAEVGGYIREPMESVEFGRIAAQTAKQVI 120
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLR 177
+QKVREAER + +++KVG++I GTVKRV+ GNV +DLG + + + R+E I RE+ R
Sbjct: 121 VQKVREAERAQVVDMYREKVGQMIHGTVKRVDRGNVTLDLGGNAEAFLPREEMIPRESFR 180
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
GDR++ Y+ ++R E RGPQ+++SR P+ +++LF +EVPEI +G++ +K +RDPG RA
Sbjct: 181 TGDRIRGYLKEIRPEGRGPQLIVSRIAPELLIELFTLEVPEISDGMIDIKGAARDPGLRA 240
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV + +S IDPVGACVGMRGSRVQAV EL E++DI++W D A F INA+ PA V
Sbjct: 241 KIAVLAKESRIDPVGACVGMRGSRVQAVTNELGGERVDIILWDEDVARFAINAMAPAEVL 300
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
+V+DED +++ V QLS AIGR GQNVRLASQLTGW +++++ + + + E
Sbjct: 301 SIVVDEDAHSMDIAVEDGQLSQAIGRSGQNVRLASQLTGWELNVMSSSDADKKAETEIGE 360
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
Q FM+ ++VDE +A +L EGF+ +EE+A V E+ IE FD++ E++ RAR+ L
Sbjct: 361 LIQDFMKDLDVDEDVALILAQEGFSSLEEVAYVPEQEMLDIEEFDDDIVAELRSRARDVL 420
Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477
I ++++ S+EL + GI + + L N + T++DLA +VD+L+
Sbjct: 421 LTRAIASEEQLESAEPSQELLDMEGITKDLALTLASNSVTTLDDLADLAVDELVEI---- 476
Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEE 521
G ++Q ++I+ AR W E+ E
Sbjct: 477 -------------GGMKEEQAAALIMKARES--WFANEQTDAGE 505
>gi|296533459|ref|ZP_06896041.1| transcription elongation factor NusA [Roseomonas cervicalis ATCC
49957]
gi|296266214|gb|EFH12257.1| transcription elongation factor NusA [Roseomonas cervicalis ATCC
49957]
Length = 525
Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats.
Identities = 283/522 (54%), Positives = 370/522 (70%), Gaps = 18/522 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
R ELLQ+A+AVA EK I+RD VL M +IQKA R+ YG DIR I+ TG++ L R
Sbjct: 9 RPELLQVAEAVAREKMIERDEVLEAMEQAIQKAGRAKYGHEKDIRAVIDRRTGEVKLSRW 68
Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
EVVE+ VEN QI ++A+ P I +G + DPLPP+DFGR+A Q+AKQVI+Q+VR
Sbjct: 69 TEVVEQEPVENEATQIPHRIAQKIKPGIAVGEFIVDPLPPIDFGRIAAQTAKQVIVQRVR 128
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183
E ER +Q+ E+KD+VGEII+G VKR EYGN++VDLG ++ ++RRDETI RE R GDRV+
Sbjct: 129 EVERSKQFNEYKDRVGEIINGVVKRTEYGNLMVDLGRAEALLRRDETIPREAFRNGDRVR 188
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+YIYDVR E RGPQ+ LSRTHP F+ KLF EVPEIY+GI+++KAV+RDPGSRAK+AV S
Sbjct: 189 AYIYDVREEPRGPQIFLSRTHPGFLAKLFAQEVPEIYDGIIEIKAVARDPGSRAKMAVIS 248
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D+ TFV+NAL PA V+KVV+D+
Sbjct: 249 RDSSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSADNPTFVVNALAPAEVSKVVMDD 308
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
D R+EV+VP +QLSLAIGRRGQNVRLASQLT W IDI+TE E+S RQ++F +RT F+
Sbjct: 309 DSKRVEVVVPDDQLSLAIGRRGQNVRLASQLTRWDIDILTEAEESERRQEEFRKRTGLFV 368
Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423
+A++VD++IA LLV EGF +EEL V ++A IEGFDE A E++ R++ +L+ D
Sbjct: 369 EALDVDDVIAGLLVTEGFGSIEELMEVPDEDLAEIEGFDENVAAELKRRSQAFLDRRDQE 428
Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483
L +K + LGV + + G + V LGE G+KT++DLA + D+L+
Sbjct: 429 LDEKRQALGVEDAVAEAGGFTPAMLVTLGEKGVKTLDDLADLAADELIEI---------- 478
Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525
L + +D ++I+ AR W +E D A
Sbjct: 479 ----LGTEAVDEDTANAIIMAAREH--WFAQEGNQDGGAAQA 514
>gi|293390259|ref|ZP_06634593.1| transcription elongation factor NusA [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|290950793|gb|EFE00912.1| transcription elongation factor NusA [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 498
Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats.
Identities = 198/513 (38%), Positives = 315/513 (61%), Gaps = 24/513 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L A+AV+ EK + R+ + + +I + + Y D+RV INP+TG+ FR
Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIALSTKKKYEYDVDVRVAINPKTGEFDTFRRWV 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV N T +I+L+ AR DP +G V D + + F R+ +Q+A+QVI K+REAER
Sbjct: 64 VVEEVNNPTKEITLEAARFEDPDAQVGDYVEDQIESIAFDRITMQTARQVISTKIREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGDRV 182
+ +F+ K G+II+ TVK+ +VI+D+ ++ V+ R++ + REN RPGDRV
Sbjct: 124 SKIVDQFRSKEGQIITATVKKSNRDSVILDVNGEDGNKAEAVMLREDMLPRENFRPGDRV 183
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
+ +Y V E +G Q+ ++R P+ +++LF +EVPEI ++++++ +RDPGSRAK+AV
Sbjct: 184 RGVLYKVSPESKGTQLFVTRAKPEMLIELFRLEVPEIGEELIEIRSAARDPGSRAKIAVK 243
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
S+D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+D
Sbjct: 244 SNDKRIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIVVD 303
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
ED +++ V + L+ AIGR GQNVRLA+QLTGW ++++T +E + Q + ++ F
Sbjct: 304 EDKHSMDIAVEEVNLAQAIGRNGQNVRLATQLTGWVLNVMTTQELNAKHQAEDDKVLNLF 363
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGID 421
+ + +DE A LL+ EGF+ +EELA V +SE+ +I+G DE+ E+Q RA+ +
Sbjct: 364 IDTLEIDEEFAQLLIDEGFSTLEELAYVSVSELTAIDGLEDEDLVEELQTRAKNAITAQA 423
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ ++ +++ + + L ++ G++ I L E I T+E+LA VDDL E
Sbjct: 424 LAEEEALKQAKIEDRLLNLEGMNRHIAFKLSEKQITTLEELAEQGVDDLADIEE------ 477
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
+Q +I+ AR + W +
Sbjct: 478 -----------LGAEQAADLIMAAR-NICWFTE 498
>gi|17546007|ref|NP_519409.1| transcription elongation factor NusA [Ralstonia solanacearum
GMI1000]
gi|17428302|emb|CAD14990.1| probable n utilization substance transcription regulator protein
[Ralstonia solanacearum GMI1000]
Length = 491
Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats.
Identities = 199/509 (39%), Positives = 329/509 (64%), Gaps = 24/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++D+DVV + ++ A + + ++RV I+ E+G+ FR
Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVEVRVAIDRESGEHETFRRWL 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ QI L AR+++PSI++ + + + ++FGR+ Q+AKQVI+Q++R+
Sbjct: 64 VVPDDAGLQEPDKQILLFEAREQNPSINLDEFIEEQIESVEFGRIGAQAAKQVILQRIRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ ++ ++ +I++GT+KR + +IV+ G + ++ RD+ I +ENLR GDRV++
Sbjct: 124 AEREQILNDYLERGEKIMTGTIKRADKKGLIVESGRVEALLARDQMIPKENLRTGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI +V R RGPQ+ LSRT P+F++KLF EVPE+ G++++KA +RDPG RAK+AV +
Sbjct: 184 YILNVDRTARGPQIELSRTCPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+
Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEVGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V +E L++AIGR GQNVRLAS+LT W I+I+T E + + ++ + + FM+
Sbjct: 304 KHSMDVVVDEENLAVAIGRSGQNVRLASELTSWQINIMTPAESAQKQAEESSTVRKLFME 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR+ L +++
Sbjct: 364 KLDVDEEVADILIEEGFTSLEEVAYVPLQEMLEIEAFDEDTVNELRNRARDVLLTMELAK 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ VS++L + G+ ++ L E I+T +DLA +VD+L+ +
Sbjct: 424 EEKVE--KVSQDLRDLEGLTPELIGKLAEGNIQTRDDLAELAVDELVDMT---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513
G ++Q +++I+ AR W
Sbjct: 472 -------GVDEEQAKALIMKAREH--WFS 491
>gi|315126157|ref|YP_004068160.1| transcription elongation factor NusA [Pseudoalteromonas sp. SM9913]
gi|315014671|gb|ADT68009.1| transcription elongation factor NusA [Pseudoalteromonas sp. SM9913]
Length = 499
Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats.
Identities = 190/514 (36%), Positives = 318/514 (61%), Gaps = 24/514 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L +A+AV+ EK++ ++ + + ++ A + + D+RV I+ +TGD FR +
Sbjct: 4 EILLVAEAVSNEKAVPKEKIFEALEFALATATKKKHDGEIDVRVAIDRKTGDYDTFRRWQ 63
Query: 68 VVE-----EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+ E +EN +I+L+ A+ +P + +G V + + + F R+ Q AKQVI+QKV
Sbjct: 64 IAEVLEDGSLENPYSEITLEAAQVEEPDLKMGDYVEEQIESIKFDRITTQMAKQVIVQKV 123
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
REAER +KD+ GE+++G VK+ +++DLGN+ + VI RD+ + REN RPGDR
Sbjct: 124 REAERALVVEAYKDQEGELVTGVVKKATRDAIVLDLGNNAEAVIYRDDMLPRENFRPGDR 183
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++ +Y+V+ E RG Q+ ++R+ P+ +++LF +EVPEI +++++A +RDPGSRAK+AV
Sbjct: 184 IRGLLYEVKPEARGAQLFVTRSKPEMLMELFRIEVPEIGEEMIELRAAARDPGSRAKIAV 243
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+D IDPVGACVGMRG+RVQAV +EL E++DIV++ + A FVINA+ PA V +V+
Sbjct: 244 KSNDKRIDPVGACVGMRGARVQAVSSELGGERVDIVLYDDNPAQFVINAMAPAEVASIVM 303
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED +++ V + L+ AIGR GQNVRLASQLTGW ++++T +E + + ++
Sbjct: 304 DEDTHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVDEMRAKNEAESDKLINL 363
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F + +++D+ A LL+ EGF+ +EE+A V SE I+G DEET ++ RA++ L
Sbjct: 364 FTENLDIDDEFASLLINEGFSTLEEVAYVPASEFLEIDGLDEETVDVLRSRAKDALTTKA 423
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ ++ + +E+L ++ G++ + + G+ T+EDLA +D+L+ +E
Sbjct: 424 LKTEESLEGAEPAEDLLALEGLERHLAFVMASKGVVTLEDLAEQGIDELVDITE------ 477
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
++ +I+ AR + W E
Sbjct: 478 -----------LSSEKAGELIMAAR-NICWFADE 499
>gi|119944578|ref|YP_942258.1| NusA antitermination factor [Psychromonas ingrahamii 37]
gi|119863182|gb|ABM02659.1| NusA antitermination factor [Psychromonas ingrahamii 37]
Length = 499
Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats.
Identities = 192/514 (37%), Positives = 315/514 (61%), Gaps = 22/514 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK + R+ + + ++ A + Y ++RVEI+ E+G FR
Sbjct: 2 NKEILLVVEAVSNEKGLPREAIFQALESALAIATKKKYENDIEVRVEIDRESGKFDTFRR 61
Query: 66 LEVVE---EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
V+E ++EN +++ + A P I +G + D + + F R+ Q+AKQVI+QKV
Sbjct: 62 WLVLEPDAKMENPCKEMTFEAAEYETPEIKVGDYIEDEIESVTFDRITTQTAKQVIVQKV 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
REAER + ++ ++ GE+I+G VKR+ N+++DLG + + VI RDE + REN RPGDR
Sbjct: 122 REAERAQVVAQYAEQEGELITGIVKRMNRDNILLDLGGNAEAVIFRDEMLPRENFRPGDR 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++ ++ VR E RG Q+ ++RT P+ +++LF +EVPEI ++ + +RDPGSRAK+AV
Sbjct: 182 LRGLLFAVRPEARGAQLFVTRTQPEMLIELFRLEVPEIAEEMIDLMGAARDPGSRAKIAV 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+D IDPVGACVGMRG+RVQAV +EL E++DI++W + A + INA+ PA V VV+
Sbjct: 242 KSNDKRIDPVGACVGMRGARVQAVSSELGGERVDIILWDENPAQYAINAMSPADVVSVVI 301
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED +++ V ++ L+ AIGR GQNVRLASQLTGW ++++T + Q +
Sbjct: 302 DEDAHSMDIAVEEDNLAQAIGRNGQNVRLASQLTGWELNVMTVVQLREKHQAEAASVISV 361
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F +A+ +DE A +LV EGF+ +EE+A V ++E+ +I+G DE E++ RA+++L
Sbjct: 362 FTEALEIDEEFAAVLVEEGFSSLEEIAYVPLNELLAIDGLDEALIDELRVRAKDFLATKA 421
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ ++ + + +++L ++ G++ + L GI T+E+LA +VDDLL E
Sbjct: 422 LVDEEGLEDTKPADDLLALEGLEGHLAYVLASKGIITLENLAEQAVDDLLEIEE------ 475
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
+ + +I+ AR + W ++
Sbjct: 476 -----------LNEAKAGELIMAAR-NICWFSED 497
>gi|86148618|ref|ZP_01066901.1| transcription elongation factor NusA [Vibrio sp. MED222]
gi|218710446|ref|YP_002418067.1| transcription elongation factor NusA [Vibrio splendidus LGP32]
gi|85833609|gb|EAQ51784.1| transcription elongation factor NusA [Vibrio sp. MED222]
gi|218323465|emb|CAV19642.1| Transcription elongation protein nusA [Vibrio splendidus LGP32]
Length = 495
Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats.
Identities = 198/512 (38%), Positives = 319/512 (62%), Gaps = 19/512 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + ++RVEI+ +TG+ FR
Sbjct: 2 NKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKSELEIEVRVEIDRKTGNFETFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
E VEEVE T +IS++ A+ DP I++GG + D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WEAVEEVEFPTKEISIEAAKYDDPEIELGGFIEDDIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER + +F D GE+++G VK+V VI+DLGN+ + VI RD+ + REN RPGDRV+
Sbjct: 122 ERAQIVEQFIDNEGELVTGAVKKVNRDTVILDLGNNAEAVILRDDQLPRENFRPGDRVRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y V+ E RG Q+ ++R+ P+ + +LF +EVPEI ++++K +RD GSRAK+AV ++
Sbjct: 182 LLYAVKPEARGFQLFVTRSKPEMLAELFRVEVPEIGEELIELKGAARDAGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +L E+IDIV+W + A FVINA+ PA V +++DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSNDLGGERIDIVLWDDNPAQFVINAMAPADVASIIVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+
Sbjct: 302 THSMDIAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVADLEKKHQEEAVASIENFMK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++++E A +LV EGF+ +EE+A V ++E+ ++G DE E++ RA++ L + +
Sbjct: 362 HLDIEEDFAQMLVEEGFSTLEEVAYVPVNELLEVDGLDEGIVEELRNRAKDALTTLALAK 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + +E+L ++ G++ ++ L G+ T+EDLA VD+L G
Sbjct: 422 EETFDGVEPAEDLLALEGLEREMAYKLAAKGVATLEDLADQGVDELEGIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
++ +I+ AR + W E+
Sbjct: 472 -------DLTAERAGELIMAAR-NICWFGDEE 495
>gi|307825109|ref|ZP_07655330.1| transcription termination factor NusA [Methylobacter tundripaludum
SV96]
gi|307733857|gb|EFO04713.1| transcription termination factor NusA [Methylobacter tundripaludum
SV96]
Length = 505
Score = 464 bits (1193), Expect = e-128, Method: Composition-based stats.
Identities = 213/521 (40%), Positives = 324/521 (62%), Gaps = 27/521 (5%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + D + EK I++++V + +++ A + RV IN +TGD +R+
Sbjct: 3 NKEILLVVDVFSNEKDIEKEIVFQAIESALEAATIKRHANQIKARVSINRKTGDYVTYRV 62
Query: 66 LEVVE-------EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
EVV+ +VE Q+ L+VAR +P + IG +V + + +DFGR+A Q+AKQVI
Sbjct: 63 WEVVDANSQIDGDVEFPETQVLLEVARFDNPDVQIGDLVEEEIESVDFGRIAAQTAKQVI 122
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLR 177
I KVREAER + ++ +VGE+I+G VKR+E G+V +DLG + I +++ I RE +R
Sbjct: 123 IHKVREAERKKIVDAYQSRVGELITGIVKRIEKGSVYLDLGGHVEAYIAKEDMIPREAIR 182
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
GDR++ Y+ DVR E RGPQ+ +SRT P+ ++ LF +EVPE+ G+++V +RDPGSRA
Sbjct: 183 IGDRIRGYLKDVRSEPRGPQLFVSRTAPELLIALFRLEVPEVGEGLIEVMGAARDPGSRA 242
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV +D +DPVGACVGMRGSRVQ+V EL E++DI++W+P A FVINA+ PA +
Sbjct: 243 KIAVKGNDPRLDPVGACVGMRGSRVQSVSNELAGERVDIILWNPSDAQFVINAMSPAEIQ 302
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
+V+DED +++ V + LS AIGR GQNVRLA+QLTGW +++I + N + + ++
Sbjct: 303 SIVVDEDKHSMDLAVSSDNLSQAIGRGGQNVRLATQLTGWELNVIDASKAEQNSEAEADK 362
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
Q F+ +++DE IA +LV EGF VEE+A V +SE+ IEGFDEE ++ RA++ L
Sbjct: 363 IKQMFIDQLDIDEDIALILVEEGFNTVEEIAYVPVSEMLEIEGFDEELVNALRSRAKDAL 422
Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477
I ++KI +++L + G+D + + GI TM+DLA SVDDL
Sbjct: 423 LISAIAAEEKIETAEPAQDLLEMEGMDRDLAYDMASQGIITMDDLAEQSVDDL------- 475
Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518
L+ G +D+ +I+ AR W +E+ +
Sbjct: 476 ----------LNFPGINEDRAAKLIMKAREP--WFAEEQAS 504
>gi|91788290|ref|YP_549242.1| NusA antitermination factor [Polaromonas sp. JS666]
gi|91697515|gb|ABE44344.1| NusA antitermination factor [Polaromonas sp. JS666]
Length = 506
Score = 464 bits (1193), Expect = e-128, Method: Composition-based stats.
Identities = 200/523 (38%), Positives = 322/523 (61%), Gaps = 24/523 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
ELL + DA++ EK+++RDVV + ++ A + +Y DIRV ++ ++G+ FR
Sbjct: 2 NRELLMLVDAISREKNVERDVVFGAVELALASATKKVYEDGVDIRVVVDRDSGNYETFRR 61
Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
VV + ++N + + AR+ P I+ G + P+ + GR+ Q+AKQVI+QK+
Sbjct: 62 WLVVPDEAGLQNPEAEELVSDAREEIPDIEEGDYIEKPVESLPIGRIGAQAAKQVILQKI 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182
R+AER+ +F + +I GTVKR++ G++IV+ G +G +RR + I +ENLR GDRV
Sbjct: 122 RDAEREMLLNDFMSRGDKIFVGTVKRMDKGDIIVESGRVEGRLRRSDMIPKENLRAGDRV 181
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
++ I +V RG ++LSRT P++M++LF EVPEI G++++K+ +RDPGSRAK+AV
Sbjct: 182 RAMIMEVDTTLRGAPIILSRTAPEYMIELFRQEVPEIEQGLLEIKSCARDPGSRAKIAVL 241
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
S D +DP+G CVG+RG+RV V EL E++DIV+WS D A FVI AL PA V+ +V+D
Sbjct: 242 SHDKRVDPIGTCVGVRGTRVNGVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVVD 301
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
E+ ++V+V +E L+++IGR GQNVRLA++LTGW I+I+T +E + + + + + F
Sbjct: 302 EERHAMDVVVDEENLAISIGRGGQNVRLAAELTGWKINIMTADESAQKQATETDTSRKLF 361
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
M+ ++VDE IA +L++EGF +EE+A V + E+ IE FDE+T E++ RA++ L ++I
Sbjct: 362 MEKLDVDEEIADILISEGFTSLEEVAYVPLQEMLEIESFDEDTVNELRTRAKDALLTMEI 421
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482
++ GVS+ L + GI ++ L E G+ T +DLA +VD+L +
Sbjct: 422 AKEENAE--GVSQNLRDVEGITPELIAKLTEAGVHTRDDLADLAVDELTDITGQ------ 473
Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525
D+ +++I+ AR W + A
Sbjct: 474 -----------SADEAKALIMTARAH--WFTNDASDTAAPATA 503
>gi|251792720|ref|YP_003007446.1| transcription elongation factor NusA [Aggregatibacter aphrophilus
NJ8700]
gi|247534113|gb|ACS97359.1| transcription elongation factor NusA [Aggregatibacter aphrophilus
NJ8700]
Length = 498
Score = 464 bits (1193), Expect = e-128, Method: Composition-based stats.
Identities = 199/513 (38%), Positives = 316/513 (61%), Gaps = 24/513 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L A+AV+ EK + R+ + + +I + + Y D+RV INP+TG+ FR
Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIALSTKKKYEYEVDVRVTINPKTGEFDTFRRWA 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVE V + T +I+L+ AR +P I +G V D + + F R+A+Q+A+QVI K+REAER
Sbjct: 64 VVENVMSPTKEITLEAARFENPDIQLGDYVEDQIESIAFDRIAMQTARQVISTKIREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGDRV 182
+ +F+ K G+I++ TVK+ ++I+D+ ++ V+ R++ + REN RPGDRV
Sbjct: 124 SKIVDQFRAKEGQIVTATVKKSNRDSIILDVNGEDGNKAEAVMLREDMLPRENFRPGDRV 183
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
+ +Y V E +G Q+ ++R P+ +++LF +EVPEI ++++++ +RDPGSRAK+AV
Sbjct: 184 RGVLYKVNPESKGTQLFVTRAKPEMLIELFRLEVPEIGEELIEIRSAARDPGSRAKIAVK 243
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
S+D IDPVGACVGMRGSRVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+D
Sbjct: 244 SNDKRIDPVGACVGMRGSRVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIVVD 303
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
ED +++ V + L+ AIGR GQNVRLA+QLTGWT++++T EE S Q + N+ F
Sbjct: 304 EDKHAMDIAVEEVNLAQAIGRNGQNVRLATQLTGWTLNVMTTEELSEKHQAEDNKVLNLF 363
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGID 421
+ A+ +DE A LL+ EGF+ +EELA V + E+ +I+G D + E+Q RA+ +
Sbjct: 364 IDALEIDEEFAQLLIDEGFSTLEELAYVPVRELTAIDGLEDGDLVEELQTRAKNAITAKA 423
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ ++ +++ + + L ++ G++ I L E I T+E+LA VDDL E
Sbjct: 424 LAEEEALKKAQIEDRLLNLEGMNRHIAFKLAEKQITTLEELAEQGVDDLTDIEE------ 477
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
+Q +I+ AR + W +
Sbjct: 478 -----------LSAEQAADLIMAAR-NICWFTE 498
>gi|260914257|ref|ZP_05920730.1| N utilization substance A [Pasteurella dagmatis ATCC 43325]
gi|260631890|gb|EEX50068.1| N utilization substance A [Pasteurella dagmatis ATCC 43325]
Length = 494
Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats.
Identities = 199/509 (39%), Positives = 320/509 (62%), Gaps = 20/509 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L A+AV+ EK + R+ + + ++ + + Y D+RV IN +TG+ FR
Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESALALSTKKKYEQEIDVRVVINTKTGEFDTFRRWL 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV N T +I+L+ A+ DP++ +G V D + + F R+ +Q+A+QVI K+REAER
Sbjct: 64 VVEEVTNPTKEITLEAAQFEDPNVQLGDYVEDQIESVAFDRITMQTARQVISTKIREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186
++ +F+ + GEI++GTVK+V N+++DLG ++ V+ R++ + REN RPGDRV+ +
Sbjct: 124 NKIVEQFRSQEGEIVTGTVKKVNRDNIVLDLGQQAEAVMLREDMLPRENFRPGDRVRGVL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
Y V E +G Q+ ++R P+ +++LF +EVPEI ++++K +RDPGSRAK+AV ++D
Sbjct: 184 YKVSPENKGAQLFVTRAKPEMLIELFRIEVPEIGEELIEIKNAARDPGSRAKIAVKTNDK 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+DED
Sbjct: 244 RIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIVVDEDSH 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V L+ AIGR GQNVRLA+QLTGWT++++T +E + Q + N+ + FM +
Sbjct: 304 SMDIAVESANLAQAIGRNGQNVRLATQLTGWTLNVMTTDELNQKHQAEDNKVLKLFMNTL 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDITLQ 425
+DE AH+L+ EGF+ +EELA V ++E+ SI+G DE+ E+Q RA+ + + +
Sbjct: 364 EIDEEFAHILIEEGFSTLEELAYVSVNELTSIDGLEDEDLVEELQTRAKNAITAAALAEE 423
Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485
+ +++ + + L ++ G++ I + L E I T+E+LA VDDL
Sbjct: 424 EALKQAHIEDRLLALDGMNRHIALKLAEKNITTLEELAEQGVDDLADIE----------- 472
Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEK 514
+Q I+ AR + W +
Sbjct: 473 ------DLTAEQAADFIMAAR-NICWFSE 494
>gi|254516618|ref|ZP_05128677.1| N utilization substance protein A [gamma proteobacterium NOR5-3]
gi|219675041|gb|EED31408.1| N utilization substance protein A [gamma proteobacterium NOR5-3]
Length = 497
Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats.
Identities = 208/511 (40%), Positives = 325/511 (63%), Gaps = 22/511 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L +A+AV+ EK + D++ + ++ A + Y +DI V I+ ETGD R
Sbjct: 4 EILLVAEAVSNEKGVSEDIIFEAIESALAMATKKRYDEDADIEVTIDRETGDYETVRRWL 63
Query: 68 VVEEVEN--YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV + E Q + + A ++DPS+ G V + + + FGR+A Q+AKQVI+QKVR+A
Sbjct: 64 VVPDDEMALLGTQFTTEEAIEQDPSLKPGDVYQEQVENVGFGRIAAQTAKQVIVQKVRDA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER + +++ +VGE+I+GTVK+V NVIVDLGN+ +G++ R++ + RE R DRV++
Sbjct: 124 ERAQVVEQYESRVGELIAGTVKKVTRDNVIVDLGNNAEGLLPREQLVGRETFRINDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ ++ E RGPQ++LSR P+ +++LF +EVPEI ++Q+++ +RDPGSRAK+AV ++
Sbjct: 184 ILKEISTETRGPQLILSRACPEMLIELFKIEVPEISEEVIQIRSAARDPGSRAKIAVKTN 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRGSRVQAV EL +E++DIV+W + A VINA+ PA V +V+DE+
Sbjct: 244 DQRIDPVGACVGMRGSRVQAVSNELDNERVDIVLWDDNPAQLVINAMSPAEVESIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V V ++ L+ AIGR GQNVRLAS+LTGWTI++++ +E ++ + + Q FM
Sbjct: 304 SNTMDVAVAEDNLAQAIGRAGQNVRLASELTGWTINVMSVDEAVEKQEAEAGQVIQTFMD 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +LV EGF +EE+A V I E+ SI+GFDE+ A E++ RA++ L + I
Sbjct: 364 KLDVDEDVAGILVDEGFTTLEEVAYVPIDEMTSIDGFDEDIAEELRARAKDALLTLAIAS 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++++ + +L + G+D + L GI TMEDLA VD+L+
Sbjct: 424 EEELGAQEPAADLLGMDGMDRHLAFILSSRGIVTMEDLAEQGVDELMDIE---------- 473
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
+++ +I+ AR W E+E
Sbjct: 474 -------DMTEERAGELIMTARAP--WFEEE 495
>gi|148827021|ref|YP_001291774.1| transcription elongation factor NusA [Haemophilus influenzae
PittGG]
gi|148718263|gb|ABQ99390.1| transcription elongation factor NusA [Haemophilus influenzae
PittGG]
Length = 495
Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats.
Identities = 197/510 (38%), Positives = 324/510 (63%), Gaps = 20/510 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L A+AV+ EK + R+ + + +I + + + +DIRV INP+TG+ FR
Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIAISTKKKFEYETDIRVSINPKTGEFDTFRRWL 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV+ T +I+L+ A+ DP++ +G V D + + F R+A+Q+A+QVI K+REAER
Sbjct: 64 VVDEVKVPTKEITLEAAQFDDPNLQLGEYVEDQIESIAFDRIAMQTARQVISTKIREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186
+ +F+++ G+I++GTVK+V ++I+DLG ++ +I R++ + REN RPGDRV+ +
Sbjct: 124 AKVVEQFREEEGKIVTGTVKKVSRDSIILDLGNKAEAMIAREDMLPRENFRPGDRVRGVL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
Y V E + Q+ ++R+ P+ +++LF +EVPEI +++++ +RD GSRAK+AV S+D
Sbjct: 184 YKVNPEGKTAQLFVTRSKPEMLIELFRIEVPEIGEEMIEIRGAARDAGSRAKIAVKSNDK 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +++DED
Sbjct: 244 RIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIIVDEDNH 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V + L+ AIGR GQNVRLA+QLTGWT++++T +E + Q + N+ FM A+
Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLATQLTGWTLNVMTTDELNTKHQAEDNKVLNLFMNAL 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDITLQ 425
+DE A +LV EGF +EE+A V ++E+ +I+G DE+ E+Q RA+ + + +
Sbjct: 364 ELDEEFAQILVEEGFTSLEEIAYVPMNELTAIDGLEDEDLVEELQTRAKNAITVAAVAEE 423
Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485
+ +++ V + L ++ G++ + + L E I T+E+LA VDDL E
Sbjct: 424 EALKKANVEDRLLNLEGMNRHVAIKLAEKQITTLEELAEQGVDDLTDIEE---------- 473
Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
+Q +I+ AR + W +E
Sbjct: 474 -------LTAEQAADLIMAAR-NICWFGEE 495
>gi|84387286|ref|ZP_00990307.1| transcription elongation factor NusA [Vibrio splendidus 12B01]
gi|84377933|gb|EAP94795.1| transcription elongation factor NusA [Vibrio splendidus 12B01]
Length = 495
Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats.
Identities = 198/512 (38%), Positives = 319/512 (62%), Gaps = 19/512 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + ++RVEI+ +TG+ FR
Sbjct: 2 NKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKSELEIEVRVEIDRKTGNFETFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
E VEEVE T +IS++ A+ DP I++GG + D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WEAVEEVEFPTKEISIEAAKYDDPEIELGGFIEDDIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER + +F D GE+++G VK+V VI+DLGN+ + VI RD+ + REN RPGDRV+
Sbjct: 122 ERAQIVEQFIDNEGELVTGAVKKVNRDTVILDLGNNAEAVILRDDQLPRENFRPGDRVRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y V+ E RG Q+ ++R+ P+ + +LF +EVPEI ++++K +RD GSRAK+AV ++
Sbjct: 182 LLYAVKPEARGFQLFVTRSKPEMLAELFRVEVPEIGEELIELKGAARDAGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +L E+IDIV+W + A FVINA+ PA V +++DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSNDLGGERIDIVLWDDNPAQFVINAMAPADVASIIVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+
Sbjct: 302 AHSMDIAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVADLEKKHQEEAVASIENFMK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++++E A +LV EGF+ +EE+A V ++E+ ++G DE E++ RA++ L + +
Sbjct: 362 HLDIEEDFAQMLVEEGFSTLEEVAYVPVNELLEVDGLDEGIVEELRNRAKDALTTLALAK 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + +E+L ++ G++ ++ L G+ T+EDLA VD+L G
Sbjct: 422 EETFDGVEPAEDLLALEGLEREMAYKLAAKGVATLEDLADQGVDELEGIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
++ +I+ AR + W E+
Sbjct: 472 -------DLTAERAGELIMAAR-NICWFGDEE 495
>gi|73541717|ref|YP_296237.1| transcription elongation factor NusA [Ralstonia eutropha JMP134]
gi|72119130|gb|AAZ61393.1| Transcription termination factor NusA:Transcription termination
factor NusA, C-terminal duplication [Ralstonia eutropha
JMP134]
Length = 491
Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats.
Identities = 209/509 (41%), Positives = 333/509 (65%), Gaps = 24/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++D+DVV + ++ A + + DIRV I+ E+G+ FR
Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVDIRVAIDRESGEHETFRRWL 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ QI L ARD D S+++G V + ++FGR+ Q+AKQVI+Q++R+
Sbjct: 64 VVPDEQGLQEPDKQILLFEARDDDASLELGDYVEQQIESVEFGRIGAQAAKQVILQRIRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ ++ ++ +I++GTVKR + +IV+ G + ++ RD+ I +ENLR GDRV++
Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRADKKGLIVESGRVEALLARDQIIPKENLRTGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI +V R RGPQ+ LSRT P+F++KLF EVPE+ G++++KA +RDPG RAK+AV +
Sbjct: 184 YILNVDRAARGPQIELSRTAPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+
Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEIGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T+EE + + ++ + + FM
Sbjct: 304 KHCMDVVVDEENLAVAIGRSGQNVRLASELTGWQINIMTQEESAQKQAEESDAVRKLFMA 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +L+ EGF+ +EE+A V ISE+ IE FDE+T E++ RAR+ L +++
Sbjct: 364 KLDVDEEVADILIEEGFSTLEEVAYVPISEMMEIEAFDEDTVNELRNRARDALLTMELAR 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ E VS++L S+ G++ ++ L E I T +DLA +VD+L+ +
Sbjct: 424 EEKVEE--VSQDLRSLDGLNPELIGKLAEGDIHTRDDLAELAVDELVEMT---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513
G +++ +++I+ AR W
Sbjct: 472 -------GVTEEEAKALIMKAREH--WFN 491
>gi|311104987|ref|YP_003977840.1| transcription elongation protein NusA [Achromobacter xylosoxidans
A8]
gi|310759676|gb|ADP15125.1| transcription elongation protein NusA [Achromobacter xylosoxidans
A8]
Length = 492
Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats.
Identities = 204/511 (39%), Positives = 309/511 (60%), Gaps = 25/511 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++ RDVV + ++ A + + +DIRV I+ +TGD FR
Sbjct: 4 EILLLVDALAREKNVTRDVVFGALESALASAMKKRFKDDADIRVAIDRDTGDHEGFRRWL 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ Q L A++ P I G + +PL P++FGR+ Q+AKQ I+QK+R+
Sbjct: 64 VVPDEAGLQEPDKQEMLSDAQEIVPGIQEGEYIEEPLEPIEFGRIGAQAAKQAILQKIRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ +F D+ I+SGT+KR++ G+ IV+ G + + R E I +ENLR DRV++
Sbjct: 124 AEREQVLNDFLDRGESIVSGTIKRMDKGDAIVETGKIEARLPRSEMIPKENLRVADRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
++ V RG QV+LSRT P F+ +LF EVPEI G++++KA +RD G RAK+AV +
Sbjct: 184 FVLRVDHAARGQQVILSRTAPDFIRQLFENEVPEIEQGLLEIKAAARDAGVRAKIAVVAY 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVGMRGSRV AV EL E++DIV+WS D A FVI AL PA V +V+DED
Sbjct: 244 DKRIDPIGTCVGMRGSRVTAVRNELGGEQVDIVLWSEDPAQFVIGALAPANVESIVVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V +E L AIG +GQNVRLAS+LTGW I+I+T EE ++ + + FM
Sbjct: 304 KHAMDVVVDEENLPKAIGAKGQNVRLASELTGWQINIMTPEESLNRQEVERSGLRATFMS 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR L I
Sbjct: 364 KLDVDEEVADILIDEGFTGIEEIAYVPMQELLEIEAFDEDTINELRARARNALLTEAIAQ 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
+++ L +++L + G+ ++ L E + T +DLA + D+L +
Sbjct: 424 EER---LETAQDLLELEGMTPELAAKLAERQVHTRDDLAELATDELAEIA---------- 470
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G + + +I+ AR W ++E
Sbjct: 471 -------GLTEQEASDLIMRARAH--WFDEE 492
>gi|293604237|ref|ZP_06686645.1| N utilization substance A [Achromobacter piechaudii ATCC 43553]
gi|292817462|gb|EFF76535.1| N utilization substance A [Achromobacter piechaudii ATCC 43553]
Length = 492
Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats.
Identities = 206/511 (40%), Positives = 310/511 (60%), Gaps = 25/511 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++ RDVV + ++ A + + +DIRV I+ ETGD FR
Sbjct: 4 EILLLVDALAREKNVTRDVVFGALESALASAMKKRFKDDADIRVAIDRETGDHEGFRRWL 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ Q L A++ P I G + +PL P++FGR+ Q+AKQ I+QK+R+
Sbjct: 64 VVPDEAGLQEPDKQEMLSDAQEIVPDIQEGEYIEEPLEPIEFGRIGAQAAKQAILQKIRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ +F D+ I+SGT+KR++ G+ IV+ G + + R E I +ENLR DRV++
Sbjct: 124 AEREQVLNDFLDRGETIVSGTIKRMDKGDAIVETGKIEARLPRSEMIPKENLRVADRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
Y+ V RG QV+LSRT P+F+ +LF EVPEI G++++KA +RD G RAK+AV +
Sbjct: 184 YVLRVDHAARGQQVILSRTSPEFIRQLFENEVPEIEQGLLEIKAAARDAGVRAKIAVVAY 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVGMRGSRV AV EL E++DIV+WS D A FVI AL PA V +V+DED
Sbjct: 244 DKRIDPIGTCVGMRGSRVTAVRNELGGEQVDIVLWSEDPAQFVIGALAPANVESIVVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V +E L AIG +GQNVRLAS+LTGW I+I+T EE ++ + + FM
Sbjct: 304 KHAMDVVVDEENLPKAIGAKGQNVRLASELTGWQINIMTPEESLNRQEVERSGLRTTFMS 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR L I
Sbjct: 364 KLDVDEEVADILIDEGFTGIEEIAYVPMQELLEIEAFDEDTINELRARARNALLTEAIAQ 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
+++ L +++L + G+ ++ L E + T +DLA + D+L +
Sbjct: 424 EER---LETAQDLLELEGMTQELAAKLAERQVHTRDDLAELATDELAEIA---------- 470
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G + + +I+ AR W ++E
Sbjct: 471 -------GLTEQEASDLIMRARAH--WFDEE 492
>gi|94310970|ref|YP_584180.1| transcription elongation factor NusA [Cupriavidus metallidurans
CH34]
gi|93354822|gb|ABF08911.1| transcription termination/antitermination L factor [Cupriavidus
metallidurans CH34]
Length = 491
Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats.
Identities = 205/509 (40%), Positives = 330/509 (64%), Gaps = 24/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++D+DVV + ++ A + + DIRV I+ E+G+ FR
Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVDIRVHIDRESGEHETFRRWL 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ QI L AR+++ I + + + + ++FGR+ Q+AKQVI+Q++R+
Sbjct: 64 VVPDEQGLQEPDKQILLFEAREQNADIQLDDYIEEQIESVEFGRIGAQAAKQVILQRIRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ ++ D+ +I++GTVKR + +IV+ G + ++ RD+ I +ENLR GDRV++
Sbjct: 124 AEREQILNDYLDRGEKIMTGTVKRADKKGLIVESGRVEALLARDQIIPKENLRTGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI +V R RGPQ+ LSRT P+F++KLF EVPE+ G++++KA +RDPG RAK+AV +
Sbjct: 184 YILNVDRAARGPQIELSRTAPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+
Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEIGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V +E L+++IGR GQNVRLAS+LTGW I+I+T+EE + + ++ + FM
Sbjct: 304 KHSMDVVVDEENLAVSIGRSGQNVRLASELTGWQINIMTQEESAQKQAEESEVVRKLFMA 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +L+ EGF+ +EE+A V ISE+ IE FDE+T E++ RAR+ L +++
Sbjct: 364 KLDVDEEVADILIEEGFSSLEEVAYVPISEMMEIEAFDEDTVNELRNRARDALLTMELAR 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ E VS++L S+ G+ ++ L E I T +DLA +VD+L+ +
Sbjct: 424 EEKVEE--VSQDLRSLDGLTPELIGKLAEGNIHTRDDLAELAVDELVELA---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513
G +++ +++I+ AR W
Sbjct: 472 -------GVGEEEAKALIMKAREH--WFN 491
>gi|261867879|ref|YP_003255801.1| transcription elongation factor NusA [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|261413211|gb|ACX82582.1| transcription elongation factor NusA [Aggregatibacter
actinomycetemcomitans D11S-1]
Length = 498
Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats.
Identities = 198/513 (38%), Positives = 315/513 (61%), Gaps = 24/513 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L A+AV+ EK + R+ + + +I + + Y D+RV INP+TG+ FR
Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIALSTKKKYEYDVDVRVAINPKTGEFDTFRRWV 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV N T +I+L+ AR DP +G V D + + F R+ +Q+A+QVI K+REAER
Sbjct: 64 VVEEVNNPTKEITLEAARFEDPDAQVGDYVEDQIESIAFDRITMQTARQVISTKIREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGDRV 182
+ +F+ K G+II+ TVK+ +VI+D+ ++ V+ R++ + REN RPGDRV
Sbjct: 124 SKIVDQFRSKEGQIITATVKKSNRDSVILDVNGEDGNKAEAVMLREDMLPRENFRPGDRV 183
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
+ +Y V E +G Q+ ++R P+ +++LF +EVPEI ++++++ +RDPGSRAK+AV
Sbjct: 184 RGVLYKVSPESKGTQLFVTRAKPEMLIELFRLEVPEIGEELIEIRSAARDPGSRAKIAVK 243
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
S+D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+D
Sbjct: 244 SNDKRIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIVVD 303
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
ED +++ V + L+ AIGR GQNVRLA+QLTGW ++++T +E + Q + ++ F
Sbjct: 304 EDKHAMDIAVEEVNLAQAIGRNGQNVRLATQLTGWVLNVMTTQELNAKHQAEDDKVLNLF 363
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGID 421
+ + +DE A LL+ EGF+ +EELA V +SE+ +I+G DE+ E+Q RA+ +
Sbjct: 364 IDTLEIDEEFAQLLIDEGFSTLEELAYVSVSELTAIDGLEDEDLVEELQTRAKNAITAQV 423
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ ++ +++ + + L ++ G++ I L E I T+E+LA VDDL E
Sbjct: 424 LAEEEALKQAKIEDRLLNLEGMNRHIAFKLSEKQITTLEELAEQGVDDLADIEE------ 477
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
+Q +I+ AR + W +
Sbjct: 478 -----------LGAEQAADLIMAAR-NICWFTE 498
>gi|149909281|ref|ZP_01897937.1| N utilization substance protein A [Moritella sp. PE36]
gi|149807598|gb|EDM67546.1| N utilization substance protein A [Moritella sp. PE36]
Length = 499
Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats.
Identities = 200/516 (38%), Positives = 314/516 (60%), Gaps = 23/516 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + DAV+ EK++ R+ + M ++ A + Y ++RVEI+ +TG+ FR
Sbjct: 2 NKEILLVVDAVSNEKALPREKIFEAMEIALATATKKRYEGDIEVRVEIDRKTGNFETFRR 61
Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
V+++ +EN +I+L A+ D +I++GG + D + + F RV Q+AKQVIIQK
Sbjct: 62 WLVIDDKGEPLENPFSEITLDAAKYDDETIEVGGYIEDTIDSVVFDRVTTQTAKQVIIQK 121
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180
VREAERD + GE+I+G VKR V++DLGN+ + V+ RDE + RE+ R GD
Sbjct: 122 VREAERDLIVQHYAKHEGELITGLVKRANRETVVLDLGNNAEAVMFRDEMLPRESFRTGD 181
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
R+K + +V+ E RG Q+ +SR + +++LF +EVPE ++++KA +RDPGSRAK+A
Sbjct: 182 RIKGLLKEVKPEARGTQLFISRACNEMLIELFRIEVPEFNEEMLELKAAARDPGSRAKIA 241
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S+D IDPVGACVGMRG+RVQAV EL E++DI++W + A FVINA+ PA V ++
Sbjct: 242 VKSNDKRIDPVGACVGMRGARVQAVSNELNGERVDIILWDDNPAQFVINAMAPAEVASII 301
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DED +++ V +E L+ AIGR GQNVRLASQLTGW ++++T E + QK+ +
Sbjct: 302 VDEDQHSMDIAVEQENLAQAIGRNGQNVRLASQLTGWELNVMTVAEANEKHQKENDRLMN 361
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
F +++DE +A LL+ EGF+ +EE+A V ++E I+GFDE+ E++GRA+ L
Sbjct: 362 IFTDKLDIDEDMAELLIEEGFSSLEEIAYVPVNEFLQIDGFDEDLVDELRGRAKNALTTS 421
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ ++ + S +L ++ G++ + L G+ T+E+LA S+DDL E
Sbjct: 422 ALAAEESLESAEPSADLLALEGLEKHLAYVLASIGVITLEELAEQSIDDLSEIEE----- 476
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
++ +I+ AR + W +
Sbjct: 477 ------------LTDERAGELIMAAR-NICWFSDSE 499
>gi|317402909|gb|EFV83450.1| N utilization substance protein A [Achromobacter xylosoxidans C54]
Length = 492
Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats.
Identities = 204/511 (39%), Positives = 311/511 (60%), Gaps = 25/511 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++ RDVV + ++ A + + +DIRV I+ ETGD FR
Sbjct: 4 EILLLVDALAREKNVTRDVVFGALESALASAMKKRFKDDADIRVAIDRETGDHEGFRRWL 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ Q L A + P+I +G + +PL P++FGR+ Q+AKQ I+QK+R+
Sbjct: 64 VVPDEAGLQEPDKQEMLSDAVEIVPNIQVGEYIEEPLEPIEFGRIGAQAAKQAILQKIRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ +F D+ I+SGT+KR++ G+ I++ G + + R E I +ENLR DRV++
Sbjct: 124 AEREQVLNDFLDRGETIVSGTIKRMDKGDAIIETGKIEARLPRSEMIPKENLRVADRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
++ V RG QV+LSRT P+F+ +LF EVPEI G++++KA +RD G RAK+AV +
Sbjct: 184 FVLRVDHAARGQQVILSRTSPEFIRQLFENEVPEIEQGLLEIKAAARDAGVRAKIAVVAY 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVGMRGSRV AV EL E++DIV+WS D A FVI AL PA V +V+DED
Sbjct: 244 DKRIDPIGTCVGMRGSRVTAVRNELGGEQVDIVLWSEDPAQFVIGALAPANVESIVVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V +E L AIG +GQNVRLAS+LTGW I+I+T EE ++ + + FM
Sbjct: 304 KHAMDVVVDEENLPKAIGAKGQNVRLASELTGWQINIMTPEESLNRQEVERSGLRATFMN 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR L I
Sbjct: 364 KLDVDEEVADILIDEGFTGIEEIAYVPMQELLEIEAFDEDTINELRARARNALLTEAIAQ 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
+++ L +++L + G+ ++ L E + T +DLA + D+L +
Sbjct: 424 EER---LETAQDLLELEGVTPELAAKLAERQVHTRDDLAELATDELAEIA---------- 470
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G + + +I+ AR W ++E
Sbjct: 471 -------GLTEQEASDLIMRARAH--WFDEE 492
>gi|284006667|emb|CBA71929.1| transcription elongation protein (N utilization substance protein
A) [Arsenophonus nasoniae]
Length = 504
Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats.
Identities = 214/519 (41%), Positives = 318/519 (61%), Gaps = 25/519 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ +TGD FR
Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVNIDRKTGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVEEV T +I+L A+ D I +G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLVVEEVTQPTREITLDAAKFEDSEIKLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F+++ GEII+G VK+V N+ +DLGN+ + VI R++ + REN RPGDRV+
Sbjct: 122 ERAMVVEQFREQQGEIITGVVKKVNRENITLDLGNNAEAVILREDMLPRENFRPGDRVRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+YDVR E RG Q+ +SR+ P+ +V+LF +EVPEI I+++KA +RDPGSR K+AV ++
Sbjct: 182 VLYDVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEEIIEIKAAARDPGSRTKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG-------WTIDIITEEEDSINRQKDFNE 357
++V V L+ AIGR GQNVRLASQL W ++++T EE Q + +
Sbjct: 302 KCTMDVAVESSNLAQAIGRNGQNVRLASQLLKKHRGDDRWELNVMTAEELEAKHQAEAHA 361
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
F++ +++DE A LV EGF+ +EELA V I+E+ IEG DE T ++ RA+ L
Sbjct: 362 SINSFVKHLDIDEEFATALVEEGFSTLEELAYVPINELLEIEGLDETTIEVLRERAKAAL 421
Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477
+++ ++ + + +E+L ++PG++ + + L +GI T+EDLA +DDL E
Sbjct: 422 TTLELAQKESMGDNQRTEDLLNLPGMNHALAMNLAAHGICTLEDLAEQGIDDLRDIEE-- 479
Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
G +Q +I+ AR + W +
Sbjct: 480 --------------GLNDEQAGEIIMAAR-NICWFGNDP 503
>gi|148361087|ref|YP_001252294.1| N utilization substance protein A [Legionella pneumophila str.
Corby]
gi|148282860|gb|ABQ56948.1| N utilization substance protein A [Legionella pneumophila str.
Corby]
Length = 492
Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats.
Identities = 210/508 (41%), Positives = 328/508 (64%), Gaps = 23/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL +A+A++ E+ + +DV++ + +++ A R + G +R++I+P+TGD FR +
Sbjct: 4 ELLLVAEALSNERGVSKDVIILAIQAALESATRKILGLDIGVRIKIDPKTGDYETFRYWD 63
Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV EE+E Q+SL+ A++R PS +G + + +P ++FGR+ Q+A+QVI+QKVREA
Sbjct: 64 VVNEEELEFPDRQLSLEQAKERKPSAAVGDRIEEIIPSIEFGRIEAQTARQVIMQKVREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184
ER+ +F+ K+G++I GTVK+V N+I+DLG ++ + R E + E RP DRV++
Sbjct: 124 ERELIIDQFRSKLGQLIYGTVKKVTRDNIIIDLGGKAEAFLPRSEMLPHEMFRPNDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
Y+Y++ + RGPQ+ +SRT + +++LF +EVPEI I+ +KA +RDPG+RAK+AV ++
Sbjct: 184 YLYEITPQARGPQLFVSRTRNEMLIELFRIEVPEIGENIIDIKAAARDPGNRAKIAVKTN 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+GACVGMRG+RVQAV +EL E++DI++W + A VINA+ PA +T +V+DED
Sbjct: 244 DGRIDPIGACVGMRGARVQAVSSELGGERVDIILWDDNPAQLVINAMAPADITSIVVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V KEQLS AIGR GQNVRLASQLTGWT++++T EE Q++ ++ F
Sbjct: 304 THTMDLAVAKEQLSQAIGRNGQNVRLASQLTGWTLNVMTTEEFESKNQEESSKIVNLFTS 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
A+ +DE IA LLVA GF+ +EE+A V E+ +IE FDEE E++ RA + L + ++
Sbjct: 364 ALEIDEEIATLLVAHGFSSLEEVAYVPKEELLAIEEFDEEIVEELRNRANDKLLEMALSS 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
K + + L ++ G+ + L GI TMEDLA SVD+L+
Sbjct: 424 GKGLSG-TPDDSLINMEGMTEDLANKLASKGITTMEDLAEQSVDELMEIE---------- 472
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512
G +++ ++I+ AR W
Sbjct: 473 -------GISEEKAGALIMKAREP--WF 491
>gi|33596482|ref|NP_884125.1| transcription elongation factor NusA [Bordetella parapertussis
12822]
gi|33566251|emb|CAE37162.1| N utilization substance protein A [Bordetella parapertussis]
Length = 492
Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats.
Identities = 206/511 (40%), Positives = 313/511 (61%), Gaps = 25/511 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++ R+VV + ++ A + + +DIRV I+ ETG FR
Sbjct: 4 EILLLVDALAREKNVTREVVFGALESALASAMKKRFKDDADIRVSIDRETGGHEGFRRWL 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ Q L AR+ P I++G + + L P++FGR+ Q+AKQ I+QK+R+
Sbjct: 64 VVPDEAGLQEPDKQELLSEAREMAPDIEVGEYIEEALEPVEFGRIGAQAAKQAILQKIRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ +F D+ IISG++KR++ G+VI++ G + + R E I +ENLR GDRV++
Sbjct: 124 AEREQVLNDFLDRGETIISGSIKRMDKGDVIIETGKIEARLPRSEMIPKENLRVGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
++ V RG Q++LSRT P+F+ +LF EVPEI G++++KA +RDPG RAK+AV +
Sbjct: 184 FVLRVDHAARGQQLILSRTSPEFIRQLFENEVPEIEQGLLEIKATARDPGVRAKIAVVAY 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVGMRGSRV AV EL E++DIV+WS D A FVI AL PA V +V+DED
Sbjct: 244 DKRIDPIGTCVGMRGSRVTAVRNELGGEQVDIVLWSEDPAQFVIGALAPANVESIVVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V +E L AIG +GQNVRLAS+LTGW I+I+T EE ++ + FM
Sbjct: 304 KHAMDVVVDEENLPKAIGAKGQNVRLASELTGWQINIMTPEESLNRQETERAALRATFMS 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR L I
Sbjct: 364 KLDVDEEVADILIDEGFTGIEEIAYVPMQELLEIEAFDEDTINELRARARNALLTEAIAQ 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
+++ L +++L + GI ++ L E + T +DLA S D+L +
Sbjct: 424 EER---LETAQDLLELEGITPELAAKLAERQVHTRDDLAELSTDELAEIA---------- 470
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G +++ +I+ AR W ++E
Sbjct: 471 -------GLQEEEASDLIMRARAH--WFDEE 492
>gi|33592374|ref|NP_880018.1| transcription elongation factor NusA [Bordetella pertussis Tohama
I]
gi|33602223|ref|NP_889783.1| transcription elongation factor NusA [Bordetella bronchiseptica
RB50]
gi|33572019|emb|CAE41542.1| N utilization substance protein A [Bordetella pertussis Tohama I]
gi|33576661|emb|CAE33739.1| N utilization substance protein A [Bordetella bronchiseptica RB50]
gi|332381790|gb|AEE66637.1| transcription elongation factor NusA [Bordetella pertussis CS]
Length = 492
Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats.
Identities = 207/511 (40%), Positives = 313/511 (61%), Gaps = 25/511 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++ R+VV + ++ A + + +DIRV I+ ETG FR
Sbjct: 4 EILLLVDALAREKNVTREVVFGALESALASAMKKRFKDDADIRVSIDRETGGHEGFRRWL 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ Q L AR+ P I++G + + L P++FGR+ Q+AKQ I+QK+R+
Sbjct: 64 VVPDEAGLQEPDKQELLSEAREMAPDIEVGEYIEEALEPVEFGRIGAQAAKQAILQKIRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ +F D+ IISG++KR++ G+VI++ G + + R E I +ENLR GDRV++
Sbjct: 124 AEREQVLNDFLDRGETIISGSIKRMDKGDVIIETGKIEARLPRSEMIPKENLRVGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
++ V RG QV+LSRT P+F+ +LF EVPEI G++++KA +RDPG RAK+AV +
Sbjct: 184 FVLRVDHAARGQQVILSRTSPEFIRQLFENEVPEIEQGLLEIKAAARDPGVRAKIAVVAY 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVGMRGSRV AV EL E++DIV+WS D A FVI AL PA V +V+DED
Sbjct: 244 DKRIDPIGTCVGMRGSRVTAVRNELGGEQVDIVLWSEDPAQFVIGALAPANVESIVVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V +E L AIG +GQNVRLAS+LTGW I+I+T EE ++ + FM
Sbjct: 304 KHAMDVVVDEENLPKAIGAKGQNVRLASELTGWQINIMTPEESLNRQETERAALRATFMS 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR L I
Sbjct: 364 KLDVDEEVADILIDEGFTGIEEIAYVPMQELLEIEAFDEDTINELRARARNALLTEAIAQ 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
+++ L +++L + GI ++ L E + T +DLA S D+L +
Sbjct: 424 EER---LETAQDLLELEGITPELAAKLAERQVHTRDDLAELSTDELAEIA---------- 470
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G +++ +I+ AR W ++E
Sbjct: 471 -------GLQEEEASDLIMRARAH--WFDEE 492
>gi|241764251|ref|ZP_04762282.1| NusA antitermination factor [Acidovorax delafieldii 2AN]
gi|241366374|gb|EER60896.1| NusA antitermination factor [Acidovorax delafieldii 2AN]
Length = 494
Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats.
Identities = 201/514 (39%), Positives = 327/514 (63%), Gaps = 24/514 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
ELL + +A++ EK+++RDVVL + ++ +A + LY DIRV ++ ++G+ FR
Sbjct: 2 NRELLMLVEAISREKNVERDVVLGAVESALAQATKKLYQGEVDIRVSVDRDSGNYETFRR 61
Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
VV + ++N + L AR+R P +++G + + + + GR+ +AKQVI+QK+
Sbjct: 62 WLVVPDDAGLQNPDAEELLMDARERVPDVEVGEYIEEAIESVPIGRIGAMAAKQVILQKI 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182
R+AER+ +F + +I +GTVKR++ G++IV+ G +G +RR E I +ENLR GDRV
Sbjct: 122 RDAEREMLLNDFMSRGEKIFTGTVKRMDKGDIIVESGRVEGRLRRGEMIPKENLRSGDRV 181
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
++ I +V RG ++LSR+ P+FM++LF EVPEI G++++K+ +RDPGSRAK+AV
Sbjct: 182 RAMIMEVDLTLRGAPIILSRSAPEFMIELFRNEVPEIEQGLLEIKSCARDPGSRAKIAVL 241
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA V+ +V+D
Sbjct: 242 SHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVVD 301
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
E+ ++V+V +E L++AIGR GQNVRLAS LTGW I+I+ E + + + + + F
Sbjct: 302 EEKHAMDVVVDEENLAIAIGRGGQNVRLASDLTGWKINIMDAAESAQKQANETDTARKLF 361
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
M+ ++VDE IA +L++EGFA +EE+A V + E+ IE FDE+T E++ RA++ L ++I
Sbjct: 362 MEKLDVDEEIADILISEGFASLEEVAYVPLQEMLEIESFDEDTVNELRARAKDALLTMEI 421
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482
++ + E VS++L + G+ ++ L ENG+ T +DLA ++D+L +
Sbjct: 422 AREESVGE--VSQDLRDLEGLTPELIAKLAENGVHTRDDLADLAIDELTDLTGQ------ 473
Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
+ +++I+ AR W ++
Sbjct: 474 -----------SAEDAKALIMKAREH--WFAGQE 494
>gi|213852790|ref|ZP_03382322.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
Length = 485
Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats.
Identities = 194/483 (40%), Positives = 305/483 (63%), Gaps = 6/483 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPG 179
ER +F+D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPG
Sbjct: 122 ERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPG 181
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
DR++ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+
Sbjct: 182 DRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 241
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +
Sbjct: 242 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 301
Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
V+DED +++ V L+ AIGR GQNV LASQL+GW ++++T ++ Q + +
Sbjct: 302 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVHLASQLSGWELNVMTVDDLQAKHQAEAHAAI 361
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+ F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L
Sbjct: 362 EIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALAT 421
Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479
+ + + + +++L ++ G+D + L G+ T+EDLA +DDL
Sbjct: 422 LAQDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIEGLTAK 481
Query: 480 NIE 482
Sbjct: 482 KPV 484
>gi|261820127|ref|YP_003258233.1| transcription elongation factor NusA [Pectobacterium wasabiae
WPP163]
gi|261604140|gb|ACX86626.1| NusA antitermination factor [Pectobacterium wasabiae WPP163]
Length = 509
Score = 461 bits (1187), Expect = e-127, Method: Composition-based stats.
Identities = 209/526 (39%), Positives = 316/526 (60%), Gaps = 32/526 (6%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ +TGD FR
Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVSIDRKTGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV EV T +I+L A+ DPS+D+GG V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLVVNEVTLPTREITLDAAQFEDPSLDVGGYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-------NSDGVIRRDETISRENLRP 178
ER +F+++ GEII+G VK+V N+ +++ ++ VI R++ + REN RP
Sbjct: 122 ERAMVVDQFREQEGEIITGVVKKVNRDNISLEVRPIDGSNTGAEAVIGREDMLPRENFRP 181
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
GDR++ +Y VR E RG Q+ +SR+ P+ +V+LF +EVPEI I+++KA +RDPGSRAK
Sbjct: 182 GDRIRGVLYSVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEEIIEIKAAARDPGSRAK 241
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++D IDPVGACVGMRG+RVQAV +EL E+IDI++W + A FVINA+ PA V
Sbjct: 242 IAVKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPADVVS 301
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG-------WTIDIITEEEDSINR 351
+V+DED +++ V L+ AIGR GQNVRLASQL W ++++T E+
Sbjct: 302 IVVDEDTCTMDIAVESSNLAQAIGRNGQNVRLASQLLKQHRSDDRWELNVMTVEDLQAKH 361
Query: 352 QKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411
Q + + F + +++DE A +LV EGF+ +EELA V I E+ +IEG DEET ++
Sbjct: 362 QAEAHAAIDVFTKHLDIDEEFATVLVEEGFSSLEELAYVPIKELLAIEGLDEETVEALRE 421
Query: 412 RAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471
RA+ L + + ++ + + +E+L S+PG+ ++ L G+ T+EDLA VDDL
Sbjct: 422 RAKAALTTLALAHEESLGDGQPAEDLLSLPGLSRELAFKLAAIGVCTLEDLAEQGVDDLT 481
Query: 472 GWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517
E +Q +I+ AR + W +
Sbjct: 482 DIEE-----------------LNDEQAGELIMAAR-NICWFGDDNE 509
>gi|227357076|ref|ZP_03841446.1| transcription elongation protein (N utilization substance protein
A) [Proteus mirabilis ATCC 29906]
gi|227162768|gb|EEI47731.1| transcription elongation protein (N utilization substance protein
A) [Proteus mirabilis ATCC 29906]
Length = 502
Score = 461 bits (1187), Expect = e-127, Method: Composition-based stats.
Identities = 209/518 (40%), Positives = 322/518 (62%), Gaps = 26/518 (5%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ +TGD FR
Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVCIDRKTGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVEEV T +I+L+ A+ +P I++GG + D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLVVEEVTQPTREITLEAAKYEEPEIELGGFIEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F++++GEII+G VK+V N+ +DLGN+ + VI R++ + REN RPGDRV+
Sbjct: 122 ERAMVVDQFREQLGEIITGVVKKVNRDNITLDLGNNAEAVILREDMLPRENFRPGDRVRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+YDVR E RG Q+ ++R+ P+ +++LF +EVPEI I+++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYDVRTETRGAQLFVTRSRPEMLIELFRIEVPEIGEEIIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNE 357
++V V L+ AIGR GQNVRLA+QL W ++++T +E + Q + N
Sbjct: 302 KCTMDVAVESSNLAQAIGRNGQNVRLAAQLLKKHRGDDKWELNVMTADELNAKHQAEANA 361
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
+ F + +++DE A +LV EGF+ +EEL V I E+ +I+G DEET ++ RA+ L
Sbjct: 362 AIEIFTKHLDIDEDFATVLVEEGFSTLEELVYVPIDELLAIDGLDEETVEALRERAKAAL 421
Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477
I++ ++ + + +E+L ++ G++ + L GI T+EDLA +DDL
Sbjct: 422 TTIELAQKESLGDNQPAEDLLALEGMERSLAFDLAARGICTLEDLAEQGIDDLTDID--- 478
Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ +I+ AR + W +
Sbjct: 479 --------------GLNSERAGELIMAAR-NICWFGND 501
>gi|50119658|ref|YP_048825.1| transcription elongation factor NusA [Pectobacterium atrosepticum
SCRI1043]
gi|49610184|emb|CAG73626.1| N utilization substance protein A [Pectobacterium atrosepticum
SCRI1043]
Length = 509
Score = 461 bits (1187), Expect = e-127, Method: Composition-based stats.
Identities = 209/526 (39%), Positives = 317/526 (60%), Gaps = 32/526 (6%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ +TGD FR
Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVSIDRKTGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV EV T +I+L A+ DPS+D+GG V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLVVNEVTLPTREITLDAAQFEDPSLDVGGYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-------NSDGVIRRDETISRENLRP 178
ER +F+ + GEII+G VK+V N+ +++ +++ VI R++ + REN RP
Sbjct: 122 ERAMVVDQFRQQEGEIITGVVKKVNRDNISLEVRPIDGSNTSAEAVIGREDMLPRENFRP 181
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
GDR++ +Y VR E RG Q+ +SR+ P+ +V+LF +EVPEI I+++KA +RDPGSRAK
Sbjct: 182 GDRIRGVLYSVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEEIIEIKAAARDPGSRAK 241
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++D IDPVGACVGMRG+RVQAV +EL E+ID+++W + A FVINA+ PA V
Sbjct: 242 IAVKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDVILWDDNPAQFVINAMAPADVVS 301
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG-------WTIDIITEEEDSINR 351
+V+DED +++ V L+ AIGR GQNVRLASQL W ++++T E+
Sbjct: 302 IVVDEDTYTMDIAVESSNLAQAIGRNGQNVRLASQLLKQHRSEDRWELNVMTVEDLQAKH 361
Query: 352 QKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411
Q + + F + +++DE A +LV EGF+ +EELA V I E+ +IEGFDEET ++
Sbjct: 362 QAEAHAAIDVFTKHLDIDEEFATVLVEEGFSSLEELAYVPIKELLAIEGFDEETVEALRE 421
Query: 412 RAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471
RA+ L + + ++ + + +E+L S+PG+ ++ L G+ T+EDLA VDDL
Sbjct: 422 RAKAALTTLALAHEESLGDGQPAEDLLSLPGLSRELAFKLAAIGVCTLEDLAEQGVDDLT 481
Query: 472 GWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517
E +Q +I+ AR + W +
Sbjct: 482 DIEE-----------------LNDEQAGELIMAAR-NICWFGDDNE 509
>gi|332306994|ref|YP_004434845.1| NusA antitermination factor [Glaciecola agarilytica 4H-3-7+YE-5]
gi|332174323|gb|AEE23577.1| NusA antitermination factor [Glaciecola agarilytica 4H-3-7+YE-5]
Length = 497
Score = 461 bits (1187), Expect = e-127, Method: Composition-based stats.
Identities = 204/514 (39%), Positives = 318/514 (61%), Gaps = 22/514 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L +A+AV+ EK + R+ + + +I A + ++RV I+ TGD FR
Sbjct: 2 NKEILLVAEAVSNEKQVPREKIFEALEFAIASATKKKTEGEIEVRVSIDRVTGDFDTFRR 61
Query: 66 LEVVEEV---ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
V+ + EN +++L A+ +P I +G V D + + F R+ Q+AKQVI+QKV
Sbjct: 62 WMVIADDQKQENPFAEMTLSAAQIDEPDIQLGEYVEDQIESIKFDRITTQTAKQVIVQKV 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
REAER + E++++VG++I+GTVK+V N+I+DLGN+ +GVI RD+ + RE RPGDR
Sbjct: 122 REAERAQVMAEYEERVGDLITGTVKKVNRDNIIIDLGNNAEGVIYRDDMLPRETFRPGDR 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V+ +Y +R E RG Q+ +SRTHP +V+LF +EVPEI +++KA +RDPGSRAK+AV
Sbjct: 182 VRGLLYVIRPEARGAQLFISRTHPDMLVELFRLEVPEIAEETLEIKAAARDPGSRAKIAV 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
++D +DPVGACVGMRGSRVQAV +EL E++DIV+W + A FVINA+ PA V +V+
Sbjct: 242 KTNDKRLDPVGACVGMRGSRVQAVSSELSGERVDIVLWDDNPAQFVINAMAPAEVASIVV 301
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED ++V V + L+ AIGR GQNVRLA+QLTGW ++++T E+ + +++ ++
Sbjct: 302 DEDNHTMDVAVESDNLAQAIGRSGQNVRLAAQLTGWELNVMTVEDLNSKHEEENSKVLAV 361
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F+ +++DE A +LV EGF+ +EE+A V I+E+ I+G DE+ +++ RAR L
Sbjct: 362 FVNGLDIDEDFAAVLVDEGFSTLEEIAYVPINELLEIDGLDEDIVEDLRSRARAALTTQA 421
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ ++ + EEL S+ G++ + L GI +E LA VD++ E
Sbjct: 422 LANEETLEASEPKEELLSLAGMERHVAYTLASRGITDLEALAEQGVDEISDIEE------ 475
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
+++ +I+ AR + W +E
Sbjct: 476 -----------LDEEKAGQLIMAAR-NIVWFNEE 497
>gi|332283701|ref|YP_004415612.1| transcription elongation protein [Pusillimonas sp. T7-7]
gi|330427654|gb|AEC18988.1| transcription elongation protein [Pusillimonas sp. T7-7]
Length = 494
Score = 461 bits (1187), Expect = e-127, Method: Composition-based stats.
Identities = 205/511 (40%), Positives = 318/511 (62%), Gaps = 24/511 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++ R+VV + +++ A + + +DIRV I+ +G+ FR
Sbjct: 4 EILLLVDALAREKNVGREVVFGALENALASAMKKRFKEDADIRVTIDRMSGEHEGFRRWL 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ Q L A++ P I++G + + L P +FGR+ Q+AKQ I+QK+R+
Sbjct: 64 VVPDDAGLQEPDQQELLSDAQEIVPGIEVGEYIEEQLEPEEFGRIGAQAAKQAILQKIRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ +F ++ IISGTVKR++ G+ I++ G + + R ETI +EN+R GDR+++
Sbjct: 124 AEREQVLNDFLERGENIISGTVKRMDKGDAIIETGKIEARLPRSETIPKENIRIGDRIRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
++ V RG QV+LSRT P F+ +LF EVPEI G++++KA +RDPG RAK+AV +
Sbjct: 184 WVLKVDHTARGQQVILSRTAPDFIRQLFENEVPEIEQGLLEIKAAARDPGVRAKIAVIAY 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVGMRGSRV AV EL E++DIV+W+ D A FVI AL PA V +V+DED
Sbjct: 244 DKRIDPIGTCVGMRGSRVTAVRNELGGEQVDIVLWAEDPAEFVIGALAPAHVDSIVVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V E L AIG RGQNVRLAS+LTGW I+I+T EE ++++ Q F+
Sbjct: 304 KHAMDVVVDAENLPKAIGARGQNVRLASELTGWQINIMTPEESQNRQEEERTGLRQAFIT 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR L I
Sbjct: 364 KLDVDEEVADILIDEGFTGLEEIAYVPLQELLEIEAFDEDTINELRTRARNALLTEAIAQ 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
+++++ V+++L + G++ ++ L EN + T++DLA + D+L S
Sbjct: 424 EERVQ--TVAQDLLEVEGMNPELVAKLAENEVLTLDDLAELATDELAEIS---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G +D+ MI+ AR W ++E
Sbjct: 472 -------GMSEDEASQMIMRARAH--WFDEE 493
>gi|197335920|ref|YP_002155240.1| transcription termination factor NusA [Vibrio fischeri MJ11]
gi|197317410|gb|ACH66857.1| transcription termination factor NusA [Vibrio fischeri MJ11]
Length = 495
Score = 461 bits (1187), Expect = e-127, Method: Composition-based stats.
Identities = 198/512 (38%), Positives = 314/512 (61%), Gaps = 19/512 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + ++RV I+ +TGD FR
Sbjct: 2 NKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKSEMEIEVRVAIDRKTGDFETFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VE VEN T +IS++ A+ D +I++GG + D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WVAVENVENPTLEISIEAAQFEDETIEVGGYIEDDIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F D GE+I+G VK+V +IVDLGN+ + VI R++ + REN RPGDRV+
Sbjct: 122 ERAMIVEQFIDNEGELITGIVKKVNRDAIIVDLGNNAEAVILREDQLPRENFRPGDRVRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y V+ E RG Q+ ++R+ + +LF +EVPEI ++++K +RDPGSRAK+AV ++
Sbjct: 182 LLYAVKPEARGFQLFMTRSKGVMLTELFRVEVPEIGEELIELKGAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPAEVASIIVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V + L+ AIGR GQNVRLASQLTGW ++++T + + Q++ F++
Sbjct: 302 NNTMDIAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVADLNKKHQEEAQGSIDAFVK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++D A LLV EGF +EE+A V ++E+ IE DE+T ++ RA+E L + +
Sbjct: 362 HLDIDADFAQLLVEEGFTTLEEIAYVPVNELLEIEELDEDTVDALRTRAKEALTTLALAQ 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + + +E+L ++ G++ ++ L G+ T+EDLA VD+L
Sbjct: 422 EESLDGVEPAEDLLALEGLERELAFKLAAKGVITLEDLADQGVDELSDIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
+++ +I+ AR + W E+
Sbjct: 472 -------NLTEERAGELIMAAR-NICWFSDEE 495
>gi|113460963|ref|YP_719030.1| transcription elongation factor NusA [Haemophilus somnus 129PT]
gi|112823006|gb|ABI25095.1| transcription elongation protein, N utilization substance protein A
[Haemophilus somnus 129PT]
Length = 493
Score = 461 bits (1187), Expect = e-127, Method: Composition-based stats.
Identities = 207/508 (40%), Positives = 318/508 (62%), Gaps = 20/508 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L A+AV+ EK + R+ + + +I + + Y D+RV IN +TG+ S FR
Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIALSTKKKYEQEIDVRVVINTKTGEFSTFRRWL 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVE V N T +I+L+ A+ DP I +G + D + + F R+A+Q+A+QVI K+REAER
Sbjct: 64 VVETVLNPTKEITLEAAQFEDPEIKLGDYIEDEIDSIAFDRIAMQTARQVISTKIREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVKSYI 186
++ +F+ + GEI+SGTVK+V ++I+DL ++ VI R++ + REN RPGDRV+ +
Sbjct: 124 NKIVEQFRSQEGEIVSGTVKKVNRDSIILDLSQQAEAVILREDMLPRENFRPGDRVRGVL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
Y V E +G Q+ ++R P+ +V+LF +EVPEI ++++K SRDPG RAK+AV S+D
Sbjct: 184 YKVSPENKGIQLFVTRAKPEMLVELFRIEVPEIGEELIEIKGASRDPGLRAKIAVKSNDK 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRGSRVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+DED
Sbjct: 244 RIDPVGACVGMRGSRVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIVVDEDNH 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V E L+ AIGR GQNVRLA+QLTGW ++++T ++ + Q + N+ FM A+
Sbjct: 304 SMDIAVEPENLAQAIGRNGQNVRLATQLTGWVLNVMTIDDLNAKHQAEDNKILALFMTAL 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDITLQ 425
+DE AH+LV EGF ++EE+A V ++E+ +I+G DE+ E+Q RA+ + + +
Sbjct: 364 EIDEEFAHILVDEGFTNLEEIAYVAVNELTAIDGLEDEDLVEELQARAKNAITARMLAEE 423
Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485
+ +++ V E+L ++ G+ I L E I T+E+LA VDDL E
Sbjct: 424 EALKQAHVEEKLLNLEGMSRHIAFRLSEKQITTLEELAEQGVDDLSDIEE---------- 473
Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIE 513
+Q +I+ AR + W
Sbjct: 474 -------LSAEQAADLIMAAR-NICWFN 493
>gi|59711092|ref|YP_203868.1| transcription elongation factor NusA [Vibrio fischeri ES114]
gi|59479193|gb|AAW84980.1| transcription termination/antitermination L factor NusA [Vibrio
fischeri ES114]
Length = 495
Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats.
Identities = 200/512 (39%), Positives = 314/512 (61%), Gaps = 19/512 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + ++RV I+ +TGD FR
Sbjct: 2 NKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKSEMEIEVRVAIDRKTGDFETFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VE VEN T +IS++ A+ D +I+IGG V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WVAVENVENPTLEISIEAAQFEDETIEIGGYVEDDIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F D GE+I+G VK+V +IVDLGN+ + VI R++ + REN RPGDRV+
Sbjct: 122 ERAMIVEQFIDNEGELITGIVKKVNRDAIIVDLGNNAEAVILREDQLPRENFRPGDRVRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y V+ E RG Q+ ++R+ + +LF +EVPEI ++++K +RDPGSRAK+AV ++
Sbjct: 182 LLYAVKPEARGFQLFMTRSKGVMLTELFRVEVPEIGEELIELKGAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPAEVASIIVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V + L+ AIGR GQNVRLASQLTGW ++++T + + Q++ F++
Sbjct: 302 NNTMDIAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVADLNKKHQEEAQGSIDAFVK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++D A LLV EGF +EE+A V ++E+ IE DE+T ++ RA+E L + +
Sbjct: 362 HLDIDADFAQLLVEEGFTTLEEVAYVPVNELLEIEELDEDTVDALRTRAKEALTTLALAQ 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + + +E+L ++ G++ ++ L G+ T+EDLA VD+L
Sbjct: 422 EESLDGVEPAEDLLALEGLERELAFKLAAKGVITLEDLADQGVDELSDIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
+++ +I+ AR + W E+
Sbjct: 472 -------NLTEERAGELIMAAR-NICWFSDEE 495
>gi|170717519|ref|YP_001784611.1| transcription elongation factor NusA [Haemophilus somnus 2336]
gi|168825648|gb|ACA31019.1| NusA antitermination factor [Haemophilus somnus 2336]
Length = 493
Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats.
Identities = 207/508 (40%), Positives = 318/508 (62%), Gaps = 20/508 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L A+AV+ EK + R+ + + +I + + Y D+RV IN +TG+ S FR
Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIALSTKKKYEQEIDVRVVINTKTGEFSTFRRWL 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVE V N T +I+L+ A+ DP I +G + D + + F R+A+Q+A+QVI K+REAER
Sbjct: 64 VVETVLNPTKEITLEAAQFEDPEIKLGDYIEDEIDSIAFDRIAMQTARQVISTKIREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVKSYI 186
++ +F+ + GEI+SGTVK+V ++I+DL ++ VI R++ + REN RPGDRV+ +
Sbjct: 124 NKIVEQFRSQEGEIVSGTVKKVNRDSIILDLSQQAEAVILREDMLPRENFRPGDRVRGVL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
Y V E +G Q+ ++R P+ +V+LF +EVPEI ++++K SRDPG RAK+AV S+D
Sbjct: 184 YKVSPENKGIQLFVTRAKPEMLVELFRIEVPEIGEELIEIKGASRDPGLRAKIAVKSNDK 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRGSRVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+DED
Sbjct: 244 RIDPVGACVGMRGSRVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIVVDEDNH 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V E L+ AIGR GQNVRLA+QLTGW ++++T ++ + Q + N+ FM A+
Sbjct: 304 SMDIAVEPENLAQAIGRNGQNVRLATQLTGWVLNVMTIDDLNAKHQAEDNKILALFMTAL 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDITLQ 425
+DE AH+LV EGF ++EE+A V ++E+ +I+G DE+ E+Q RA+ + + +
Sbjct: 364 EIDEEFAHILVDEGFTNLEEIAYVAVNELTAIDGLEDEDLVEELQARAKNAITARMLAEE 423
Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485
+ +++ V E+L ++ G+ I L E I T+E+LA VDDL E
Sbjct: 424 EALKQAQVEEKLLNLEGMSRHIAFRLSEKQITTLEELAEQGVDDLSDIEE---------- 473
Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIE 513
+Q +I+ AR + W
Sbjct: 474 -------LSAEQAADLIMAAR-NICWFN 493
>gi|212709946|ref|ZP_03318074.1| hypothetical protein PROVALCAL_00996 [Providencia alcalifaciens DSM
30120]
gi|212687458|gb|EEB46986.1| hypothetical protein PROVALCAL_00996 [Providencia alcalifaciens DSM
30120]
Length = 502
Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats.
Identities = 209/518 (40%), Positives = 321/518 (61%), Gaps = 26/518 (5%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EKS+ R+ + + ++ A + Y D+RVEI+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+VEEV T +I+L+ A+ DP++ +G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WVIVEEVTMPTREITLEAAQFEDPALQLGEYVEDQIESVVFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F+++ GEII+ VK+V N+ +DLGN+ + VI R++ + REN RPGDR++
Sbjct: 122 ERAMVVDQFREQQGEIITAQVKKVNRENITLDLGNNAEAVILREDMLPRENFRPGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+YDVR E RG Q+ ++R+ P+ +V+LF +EVPEI I+++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYDVRPEARGAQLFVTRSRPEMLVELFRIEVPEIGEEIIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNE 357
++V V L+ AIGR GQNVRLA+QL W ++++T EE + Q + +
Sbjct: 302 NCTMDVAVESSNLAQAIGRNGQNVRLAAQLLKIHRGDDKWELNVMTAEELNAKHQAEAHA 361
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
+ F + +++DE A LV EGF+ +EELA V I E+ I+G DEET ++ RA+ L
Sbjct: 362 SIETFTKHLDIDEEFATTLVEEGFSTLEELAYVPIKELLEIDGLDEETVEVLRERAKAAL 421
Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477
I++ ++ + + +E+L ++ G+D + L +GI T+EDLA +DDL+
Sbjct: 422 TTIELAQKESLGDNQPAEDLLNLDGMDRTLAYNLATHGICTLEDLAEQGIDDLIDIE--- 478
Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ +I+ AR + W +
Sbjct: 479 --------------GLNNEKAGELIMAAR-NICWFGND 501
>gi|197287229|ref|YP_002153101.1| transcription elongation factor NusA [Proteus mirabilis HI4320]
gi|194684716|emb|CAR46696.1| transcription elongation protein (N utilization substance protein
A) [Proteus mirabilis HI4320]
Length = 502
Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats.
Identities = 208/518 (40%), Positives = 321/518 (61%), Gaps = 26/518 (5%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ +TGD FR
Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVCIDRKTGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVEEV T +I+L+ A+ +P I++GG + D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLVVEEVTQPTREITLEAAKYEEPEIELGGFIEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F++++GEII+G VK+V N+ +DLGN+ + VI R++ + REN RPGDRV+
Sbjct: 122 ERAMVVDQFREQLGEIITGVVKKVNRDNITLDLGNNAEAVILREDMLPRENFRPGDRVRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+YDVR E RG Q+ ++R+ P+ +++LF +EVPEI I+++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYDVRTETRGAQLFVTRSRPEMLIELFRIEVPEIGEEIIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNE 357
++V V L+ AIGR GQNVRLA+QL W ++++T +E + Q + N
Sbjct: 302 KCTMDVAVESSNLAQAIGRNGQNVRLAAQLLKKHRGDDKWELNVMTADELNAKHQAEANA 361
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
+ F + +++DE A +LV EGF+ +EEL V I E+ +I+ DEET ++ RA+ L
Sbjct: 362 AIEIFTKHLDIDEDFATVLVEEGFSTLEELVYVPIDELLAIDSLDEETVEALRERAKAAL 421
Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477
I++ ++ + + +E+L ++ G++ + L GI T+EDLA +DDL
Sbjct: 422 TTIELAQKESLGDNQPAEDLLALEGMERSLAFDLAARGICTLEDLAEQGIDDLTDID--- 478
Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ +I+ AR + W +
Sbjct: 479 --------------GLNSERAGELIMAAR-NICWFGND 501
>gi|297180708|gb|ADI16917.1| transcription elongation factor [uncultured gamma proteobacterium
HF0010_16J05]
Length = 512
Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats.
Identities = 203/527 (38%), Positives = 322/527 (61%), Gaps = 28/527 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + ++V++EK + +DV+ + ++ A + YG ++ RV I+ E+G+ FR
Sbjct: 4 EILLVVESVSHEKGVSKDVLFGAIESALAVATKKKYGENAEFRVAIDRESGEYETFRTWA 63
Query: 68 VVE---------EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
VV+ N Q S+ A+ P +G V+ + + + FGR+A Q+AKQVI
Sbjct: 64 VVDFGEIEAEEEAEVNPEAQYSVDQAQSFKPGAVLGDVIEEQVESVAFGRIAAQTAKQVI 123
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLR 177
+QKVREAER + + +V E++SGTVK++ +VIVDLGN+ +G++ R+ I RE R
Sbjct: 124 VQKVREAERAQVVEAYTSRVNELVSGTVKKLGRDSVIVDLGNNAEGILTREHLIPREIFR 183
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
GDR+++ + ++R + RGPQ++LSRT +V+LF +EVPEI ++Q+ +RDPGSRA
Sbjct: 184 VGDRLRAMLVEIRPDNRGPQLILSRTARSMLVELFKVEVPEISEDVIQILGAARDPGSRA 243
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV ++D IDPVGACVGMRGSRVQAV EL E+IDIV+W + A INA+ PA V
Sbjct: 244 KIAVKTNDGRIDPVGACVGMRGSRVQAVSGELAGERIDIVLWDDNPAQLTINAMAPAEVA 303
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
+VLDE+ +++ V +E L+ AIGR GQNVRLAS L GW+++I+TEEE + + + ++
Sbjct: 304 SIVLDEETHAMDIAVTEENLAQAIGRGGQNVRLASDLCGWSLNIMTEEEAAEKLEAESSK 363
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
FM+A++VDE +A +LV EGF +EE+A V + E+ +IEGFDEE E++ RA++ L
Sbjct: 364 FISEFMEALSVDEDVAAVLVEEGFTTLEEIAYVPVEEVMAIEGFDEEIVNELRNRAKDAL 423
Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477
I ++ + + +++L + G++ ++ L + + TMEDLA +V +LL
Sbjct: 424 LTRAIASEEALGDNKPADDLLEMEGMERELAFKLAAHEVITMEDLAELAVPELLEIDPE- 482
Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524
+D+ ++I+ AR W +E + +
Sbjct: 483 ---------------LSEDKAAALILKAREP--WFAEEAQDAQATVE 512
>gi|268592826|ref|ZP_06127047.1| L factor [Providencia rettgeri DSM 1131]
gi|291311611|gb|EFE52064.1| L factor [Providencia rettgeri DSM 1131]
Length = 502
Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats.
Identities = 208/518 (40%), Positives = 321/518 (61%), Gaps = 26/518 (5%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EKS+ R+ + + ++ A + Y D+RVEI+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+VEEV T +I+L+ A+ DP++ +G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLIVEEVTMPTREITLEAAQYEDPALQLGEYVEDQIESVVFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F+++ GEII+ VK+V N+ +DLGN+ + VI R++ + REN RPGDR++
Sbjct: 122 ERAMVVDQFREQQGEIITAQVKKVNRENITLDLGNNAEAVILREDMLPRENFRPGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+YDVR E RG Q+ ++R+ P+ +++LF +EVPEI I+++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYDVRPEARGAQLFVTRSRPEMLIELFRIEVPEIGEEIIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNE 357
++V V L+ AIGR GQNVRLA+QL W ++++T EE + Q + +
Sbjct: 302 KCTMDVAVESSNLAQAIGRNGQNVRLAAQLLKKHRGDDKWELNVMTAEELNAKHQAEAHA 361
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
F + +++DE A LV EGF+ +EELA V I+E+ I+G DEET ++ RA+ L
Sbjct: 362 SIDTFTKHLDIDEEFATALVEEGFSTLEELAYVPINELLEIDGLDEETVEVLRERAKAAL 421
Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477
I++ ++ + + +E+L ++ G+D + L GI T+EDLA +DDL+
Sbjct: 422 TTIELAQKESLGDNQPAEDLLNLEGMDRTLAYNLATRGICTLEDLAEQGIDDLIDIE--- 478
Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ ++I+ AR + W +
Sbjct: 479 --------------GLDDEKAGTLIMAAR-NICWFGND 501
>gi|300721537|ref|YP_003710812.1| transcription pausing L factor [Xenorhabdus nematophila ATCC 19061]
gi|297628029|emb|CBJ88578.1| transcription pausing; L factor [Xenorhabdus nematophila ATCC
19061]
Length = 502
Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats.
Identities = 208/518 (40%), Positives = 320/518 (61%), Gaps = 26/518 (5%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALEIALATATKKKYEQEIDVRVCIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVEEV T +I+L A+ DP I++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLVVEEVTLPTREITLDAAKFEDPEIELGSYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F+++ GEI++ VK+V N+ +DLGN+ + VI R++ + REN RPGDRV+
Sbjct: 122 ERAMVVDQFREQQGEIVTAQVKKVNRENITLDLGNNAEAVILREDMLPRENFRPGDRVRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+YDVR E RG Q+ ++R+ P+ +V+LF +EVPEI I+++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYDVRPEARGAQLFITRSRPEMLVELFRIEVPEIGEEIIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNE 357
++V V L+ AIGR GQNVRLA+QL W ++++T EE Q + +
Sbjct: 302 NCTMDVAVENSNLAQAIGRNGQNVRLAAQLLKKHRGDDKWELNVMTAEELQAKHQAEAHA 361
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
F + +++DE A +LV EGF+ +EELA V I+E+ ++EG DEE+ ++ RA+ L
Sbjct: 362 SIDTFTKHLDIDEDFATVLVEEGFSTLEELAYVPINELLAVEGLDEESVEVLRERAKAAL 421
Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477
+++ ++ + + +E+L ++PG++ + L +GI T+EDLA +DDL
Sbjct: 422 TTLELAQKESLSDQQPAEDLLNLPGMERTLAFNLAAHGICTLEDLAEQGIDDLSDIE--- 478
Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ +I+ AR + W +
Sbjct: 479 --------------GLNDEKAGELIMAAR-NICWFGDD 501
>gi|109898014|ref|YP_661269.1| NusA antitermination factor [Pseudoalteromonas atlantica T6c]
gi|109700295|gb|ABG40215.1| NusA antitermination factor [Pseudoalteromonas atlantica T6c]
Length = 497
Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats.
Identities = 202/514 (39%), Positives = 317/514 (61%), Gaps = 22/514 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L +A+AV+ EK + R+ + + +I A + ++RV I+ TGD FR
Sbjct: 2 NKEILLVAEAVSNEKQVPREKIFEALEFAIASATKKKTEGEIEVRVAIDRITGDFDTFRR 61
Query: 66 LEVVEEV---ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
V+ + EN ++++ A+ +P I +G V D + + F R+ Q+AKQVI+QKV
Sbjct: 62 WMVIADDQKQENPFAEMTISAAQIDEPDIQLGDYVEDQIESIKFDRITTQTAKQVIVQKV 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
REAER + E++++VG++++GTVK+V N+I+DLGN+ +GVI RD+ + RE RPGDR
Sbjct: 122 REAERAQVMAEYEERVGDLVTGTVKKVNRDNIIIDLGNNAEGVIYRDDMLPRETFRPGDR 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V+ +Y +R E RG Q+ +SRTHP +V+LF +EVPEI +++KA +RDPGSRAK+AV
Sbjct: 182 VRGLLYVIRPEARGAQLFVSRTHPDMLVELFRLEVPEIAEETLEIKAAARDPGSRAKIAV 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
++D +DPVGACVGMRGSRVQAV +EL E++DIV+W + A FVINA+ PA V +V+
Sbjct: 242 KTNDKRLDPVGACVGMRGSRVQAVSSELSGERVDIVLWDDNPAQFVINAMAPAEVASIVV 301
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED ++V V + L+ AIGR GQNVRLA+QLTGW ++++T E+ + ++ ++
Sbjct: 302 DEDNHTMDVAVESDNLAQAIGRSGQNVRLAAQLTGWELNVMTVEDLNNKHDEENSKVLAV 361
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F+ +++DE A +LV EGF+ +EE+A V I+E+ I+G DE+ +++ RAR L
Sbjct: 362 FVNGLDIDEEFAAVLVDEGFSTLEEIAYVPINELLEIDGLDEDIVDDLRSRARAALTTQA 421
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ ++ + EEL S+ G++ + L GI +E LA VD++ E
Sbjct: 422 LANEETLEASEPKEELLSLAGMERHVAYTLASRGITDLEALAEQGVDEISDIEE------ 475
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
+++ +I+ AR + W +E
Sbjct: 476 -----------LDEEKAGQLIMAAR-NIVWFNEE 497
>gi|296135767|ref|YP_003643009.1| transcription termination factor NusA [Thiomonas intermedia K12]
gi|294339930|emb|CAZ88293.1| transcription pausing; L factor [Thiomonas sp. 3As]
gi|295795889|gb|ADG30679.1| transcription termination factor NusA [Thiomonas intermedia K12]
Length = 492
Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats.
Identities = 204/509 (40%), Positives = 323/509 (63%), Gaps = 24/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++DRDVV + ++ A + LY +D+RV+I+ TG+ FR
Sbjct: 4 EILMLVDALAREKNVDRDVVFGAVEAALASATKRLYEGEADVRVQIDRNTGEYESFRRWH 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ +I L AR++ P I++G + +P+ + FGR+ Q+AKQVI+QK+R+
Sbjct: 64 VVPDEAGLQLPDSEILLFEAREQIPDIEVGDYIEEPIESIAFGRIGAQAAKQVILQKIRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ +F + +I +G+VKR++ G++I++ G D +RR + I +ENLR GDRV++
Sbjct: 124 AEREQILNDFLARNDKIFNGSVKRLDKGDLIIESGKVDARLRRSDLIPKENLRVGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
I + R RGPQ+ +SRT P+FM++LF +EVPEI G++++K+ +R+PG RAK+AV S
Sbjct: 184 VITKIDRTARGPQIEISRTAPEFMIELFRLEVPEIEQGLMEIKSCAREPGVRAKIAVVSH 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D +DP+G CVG+RGSRV AV EL E++DIV+WS D A FVI AL PA V+ +V+DE+
Sbjct: 244 DRRVDPIGTCVGIRGSRVTAVTNELGGERVDIVLWSEDPAQFVIGALAPANVSSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V V +E L+LAIGR GQNVRLAS+LTGW I+I++ EE ++ + F++
Sbjct: 304 KHAMDVAVDEENLALAIGRTGQNVRLASELTGWKINILSAEESDARNTQETQKMRSLFVE 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VD+ +A +L+AEGF +EELA V I+E+ IE FDE+T E++ RAR L +I
Sbjct: 364 KLDVDQEVADILIAEGFTSLEELAYVPINEMLEIEAFDEDTVNELRERARNALLTQEIAR 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ E+ + L ++ G+ + L E G+ T++DL + D+L G
Sbjct: 424 EQKLDEVDPA--LKALDGLSADELALLAEAGVLTLDDLGDLATDELTGILRT-------- 473
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513
+ + +I+ AR W +
Sbjct: 474 ---------DEARAADLILKARAH--WFD 491
>gi|88705684|ref|ZP_01103394.1| Transcription elongation protein nusA [Congregibacter litoralis
KT71]
gi|88700197|gb|EAQ97306.1| Transcription elongation protein nusA [Congregibacter litoralis
KT71]
Length = 497
Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats.
Identities = 207/511 (40%), Positives = 326/511 (63%), Gaps = 22/511 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L +A+AV+ EK + D++ + ++ A + Y +DI V I+ ETGD R
Sbjct: 4 EILLVAEAVSNEKGVSEDIIFEAIESALAMATKKRYDEDADIEVTIDRETGDYETVRRWL 63
Query: 68 VVEEVEN--YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV + E Q + + A ++DPS+ G V + + + FGR+A Q+AKQVI+QKVR+A
Sbjct: 64 VVPDDELALLGTQFTTEEAIEQDPSLKPGDVHEEKVENVGFGRIAAQTAKQVIVQKVRDA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER + ++ +VGE+++GTVK+V NVIVDLGN+ +G++ R++ + RE R DRV++
Sbjct: 124 ERAQVVELYESRVGELVAGTVKKVTRDNVIVDLGNNAEGLLPREQLVGRETFRINDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ ++ E RGPQ++LSR P+ +++LF +EVPEI ++Q+++ +RDPGSRAK+AV ++
Sbjct: 184 ILKEISTETRGPQLILSRACPEMLIELFKIEVPEISEEVIQIRSAARDPGSRAKIAVKTN 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRGSRVQAV EL +E++DIV+W + A VINA+ PA V +V+DE+
Sbjct: 244 DQRIDPVGACVGMRGSRVQAVSNELDNERVDIVLWDDNPAQLVINAMSPAEVESIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V V ++ L+ AIGR GQNVRLAS+LTGWTI++++ +E ++ + + Q FM
Sbjct: 304 NVTMDVAVAEDNLAQAIGRAGQNVRLASELTGWTINVMSVDEALEKQEAEAGQVIQTFMD 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +LV EGF +EE+A V + E+ SI+GFDE+ A E++ RA++ L + I
Sbjct: 364 KLDVDEDVAGILVDEGFTTLEEVAYVPLEEMTSIDGFDEDIAEELRARAKDALLTLAIAS 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++++ +E+L ++ G+D + L GI TMEDLA VD+L+
Sbjct: 424 EEELGAQEPAEDLLTMDGMDRHLAFILSSRGIVTMEDLAEQGVDELMDIE---------- 473
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
+++ +I+ AR W E+E
Sbjct: 474 -------DMTEERAGELIMTARAP--WFEEE 495
>gi|183600365|ref|ZP_02961858.1| hypothetical protein PROSTU_03930 [Providencia stuartii ATCC 25827]
gi|188020156|gb|EDU58196.1| hypothetical protein PROSTU_03930 [Providencia stuartii ATCC 25827]
Length = 502
Score = 461 bits (1185), Expect = e-127, Method: Composition-based stats.
Identities = 207/518 (39%), Positives = 320/518 (61%), Gaps = 26/518 (5%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EKS+ R+ + + ++ A + Y D+RVEI+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+VE+V T +I+L+ A+ +P + +G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLIVEDVTMPTREITLEAAQFENPELKLGEYVEDQIESVAFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F+++ GEII+ VK+V N+ +DLGN+ + VI R++ + REN RPGDR++
Sbjct: 122 ERAMVVDQFREQQGEIITAQVKKVNRENITLDLGNNAEAVILREDMLPRENFRPGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+YDVR E RG Q+ ++R+ P+ +V+LF +EVPEI I+++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYDVRPEARGAQLFVTRSRPEMLVELFRIEVPEIGEEIIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNE 357
++V V L+ AIGR GQNVRLA+QL W ++++T EE + Q + +
Sbjct: 302 KCTMDVAVESSNLAQAIGRNGQNVRLAAQLLKKHRGDDKWELNVMTAEELNAKHQAEAHA 361
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
F + +++DE A LV EGF+ +EELA V I E+ I+G DEET ++ RA+ L
Sbjct: 362 SIDTFTKHLDIDEEFATALVEEGFSTLEELAYVPIKELLEIDGLDEETVEVLRERAKAAL 421
Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477
I++ ++ + + +E+L ++ G+D+ + L GI T+EDLA +DDL+
Sbjct: 422 TTIELAQKESLGDNQPAEDLLNLDGMDNTLAYNLAIRGICTLEDLAEQGIDDLIDIE--- 478
Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ ++I+ AR + W +
Sbjct: 479 --------------GLDGEKAGALIMAAR-NICWFGND 501
>gi|290473446|ref|YP_003466313.1| transcription pausing; L factor [Xenorhabdus bovienii SS-2004]
gi|289172746|emb|CBJ79517.1| transcription pausing; L factor [Xenorhabdus bovienii SS-2004]
Length = 502
Score = 461 bits (1185), Expect = e-127, Method: Composition-based stats.
Identities = 207/518 (39%), Positives = 319/518 (61%), Gaps = 26/518 (5%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALEIALATATKKKYEQEIDVRVCIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VEEV T +I+L+ A+ DP +++GG + D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WVAVEEVTLPTREITLEAAKYEDPEMELGGYIEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F+++ GEI++ VK+V N+ +DLGN+ + VI R++ + REN RPGDRV+
Sbjct: 122 ERAMVVDQFREQQGEIVTAQVKKVNRENITLDLGNNAEAVILREDMLPRENFRPGDRVRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+YDVR E RG Q+ ++R+ P+ +V+LF +EVPEI I+++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYDVRPEARGAQLFITRSRPEMLVELFRIEVPEIGEEIIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNE 357
++V V L+ AIGR GQNVRLA+QL W ++++T EE Q + +
Sbjct: 302 NCTMDVAVESSNLAQAIGRNGQNVRLAAQLLKKHRGDDKWELNVMTAEELQAKHQAEAHA 361
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
F + +++D A +LV EGF+ +EELA V I+E+ +IEG DEET ++ RA+ L
Sbjct: 362 SIDTFTKHLDIDVDFATVLVEEGFSTLEELAYVPINELLAIEGLDEETVEVLRERAKAAL 421
Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477
+++ ++ + + +E+L ++ G+D + L +GI T+EDLA +DDL
Sbjct: 422 TTLELAQKESLGDQQPAEDLLNLSGMDRTLAFNLAAHGICTLEDLAEQGIDDLSDIE--- 478
Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ +I+ AR + W +
Sbjct: 479 --------------GLSDEKAGELIMAAR-NICWFGDD 501
>gi|292492785|ref|YP_003528224.1| transcription termination factor NusA [Nitrosococcus halophilus
Nc4]
gi|291581380|gb|ADE15837.1| transcription termination factor NusA [Nitrosococcus halophilus
Nc4]
Length = 506
Score = 461 bits (1185), Expect = e-127, Method: Composition-based stats.
Identities = 223/524 (42%), Positives = 328/524 (62%), Gaps = 23/524 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + DAV+ EK + ++V+ + ++ A R Y +RV I+ TGD FR
Sbjct: 2 NKEILMVVDAVSNEKGVGKEVIFQAIEAALAMATRKRYQEDIAVRVAIDRATGDYQSFRT 61
Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
EVVE+ +E QI L A RDP+I++GG + +P+ + FGR+A Q+AKQVI+QKV
Sbjct: 62 WEVVEDEAELEAPQRQICLGEALKRDPNIEVGGFIEEPMESIAFGRIAAQTAKQVIVQKV 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
REAER + +KD+VGE++ G VKR + GNVI+DLG++ +G+I ++E I RE +RPGDR
Sbjct: 122 REAERAKVVAAYKDRVGEMVMGVVKRTDRGNVILDLGDNAEGIIPQEEMIPREAIRPGDR 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++ Y+ +VR E RGPQ++LSRT P+ +++LF +EVPEI +++K +RDPG RAK+AV
Sbjct: 182 LRGYLKEVRTEGRGPQLVLSRTAPELLIELFKLEVPEINENRIEIKGAARDPGLRAKIAV 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
++++ IDPVGACVGMRGSRVQAV EL E++DIV+W D A FVINA+ PA V +V+
Sbjct: 242 KTNEARIDPVGACVGMRGSRVQAVSNELAGERVDIVLWDEDPAHFVINAMAPAEVASIVV 301
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DE+ ++V V + LS AIGR GQN+RLASQLTGW ++++TEEE + + Q
Sbjct: 302 DEESHSMDVAVAEGNLSQAIGRGGQNIRLASQLTGWELNVMTEEEAGEKGEAEAKALQQM 361
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM+ ++VDE +A +LV EGF+ +EE+A V EI ++E FD + E++ RAR+ L
Sbjct: 362 FMEQLDVDEEVAAILVHEGFSSIEEVAYVPEQEILAVEEFDSQIVQELRNRARDVLLTRA 421
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
I ++ I + +EL + ID ++ L GI T +DLA SVDDL+
Sbjct: 422 IANEETIETMQPDQELLDMEEIDYELAGILASKGIVTKDDLAEQSVDDLMEIE------- 474
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525
G K++ +I+ AR W E+ + +
Sbjct: 475 ----------GMDKEKAARLIMAARES--WFASEQEGEGTEERQ 506
>gi|121604913|ref|YP_982242.1| NusA antitermination factor [Polaromonas naphthalenivorans CJ2]
gi|120593882|gb|ABM37321.1| NusA antitermination factor [Polaromonas naphthalenivorans CJ2]
Length = 506
Score = 461 bits (1185), Expect = e-127, Method: Composition-based stats.
Identities = 200/511 (39%), Positives = 317/511 (62%), Gaps = 24/511 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
ELL + DA++ EK+++RDVV + ++ A + +Y DIRV ++ ++G+ FR
Sbjct: 2 NRELLMLVDAISREKNVERDVVFGAVELALASATKKVYADGVDIRVAVDRDSGNYETFRR 61
Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
VV + ++N + + ARD P I+ G + P+ + GR+ Q+AKQVI+QK+
Sbjct: 62 WLVVADEAGLQNPEAEELVTDARDEIPDIEEGDYIEKPVESLPIGRIGAQAAKQVILQKI 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182
R+AER+ +F + +I GTVKR++ G++IV+ G +G +RR + I +ENLR GDRV
Sbjct: 122 RDAEREMLLNDFMSRGDKIFVGTVKRMDKGDLIVESGRVEGRLRRSDMIPKENLRTGDRV 181
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
++ I +V RG ++LSRT P++M++LF EVPEI G++++K +RDPGSRAK+AV
Sbjct: 182 RAMIMEVDTTLRGAPIILSRTSPEYMIELFRQEVPEIEQGLLEIKTCARDPGSRAKIAVL 241
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
S D +DP+G CVG+RG+RV V EL E++DIV+WS D A FVI AL PA V+ +V+D
Sbjct: 242 SHDKRVDPIGTCVGVRGTRVNGVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVVD 301
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
E+ ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+ E + + + + + F
Sbjct: 302 EERHAMDVVVDEENLAIAIGRGGQNVRLASELTGWKINIMDANESAQKQATETDSSRKLF 361
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
M ++VD+ IA +L+AEGF +EE+A V + E+ IE FDE+T E++ RA++ L ++I
Sbjct: 362 MAKLDVDQEIADILIAEGFTSLEEVAYVPLQEMLEIESFDEDTVNELRTRAKDALLTMEI 421
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482
++ + GVS+ L + G+ ++ L E G+ T +DLA +VD+L +
Sbjct: 422 AQEENVG--GVSQNLRDVEGLTPELIAKLTEAGVATRDDLADLAVDELTDITGQ------ 473
Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
D+ +++I+ AR W
Sbjct: 474 -----------SADEAKALIMTARAH--WFT 491
>gi|119898399|ref|YP_933612.1| transcription elongation factor NusA [Azoarcus sp. BH72]
gi|119670812|emb|CAL94725.1| putative N utilization substance protein A [Azoarcus sp. BH72]
Length = 491
Score = 461 bits (1185), Expect = e-127, Method: Composition-based stats.
Identities = 212/509 (41%), Positives = 336/509 (66%), Gaps = 23/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++ +D+V + ++ A + +D+RV I+ ETGD FR
Sbjct: 4 EILLLVDALAREKNVAKDIVFGALESALASATKKRIHDEADVRVSIDRETGDYESFRRWI 63
Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
V+ EEV N ++ + AR+ D I +G + +PL P+DFGR+ Q+AKQVI+Q++R+A
Sbjct: 64 VMPDEEVTNDEAEMGIIDARELDSKIQLGEYIEEPLEPIDFGRIGAQAAKQVILQRIRDA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER++ +F D+ ++SG++KR+E GN I+++G + V+ RD+ I RENLR GDRVK++
Sbjct: 124 EREQVLNDFLDRKEFLVSGSIKRMERGNAIIEVGRLEAVLPRDQQIPRENLRVGDRVKAF 183
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ + R RGPQ++LSRT P+F++KLF +EVPEI +G++++KA +RDPG RAK+AV S+D
Sbjct: 184 LLKIDRGARGPQLILSRTAPEFLMKLFELEVPEIEDGLLEIKACARDPGLRAKIAVKSND 243
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
IDP+G CVG+RGSRV AV E+ E+IDI+VW+ D A FVI AL+PA V +V+DE+
Sbjct: 244 QRIDPIGTCVGLRGSRVTAVRNEIGGEQIDIIVWAADPAQFVIAALQPAEVVSIVVDEEA 303
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
++V+V + L++AIGR GQNV+LAS+LTGWTI++++E+E + +++ + FM+
Sbjct: 304 HAMDVVVDESNLAIAIGRNGQNVKLASELTGWTINLMSEQESAEKSEQEKSGIRSLFMEK 363
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425
++VDE +A +L+ EGF+ +EE+A V ++E+ IE FDEET E++ RAR L I +
Sbjct: 364 LDVDEEVADILIDEGFSSLEEIAYVPLAEMLEIEAFDEETVTELRNRARNVLLTEAIVTE 423
Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485
+++ VS++L + G+D + L GI+T +DLA +VD+L+ +
Sbjct: 424 EQLE--NVSDDLLGLDGMDKSLAAKLAGKGIRTRDDLADLAVDELVEMA----------- 470
Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEK 514
G +Q +++I AR W E+
Sbjct: 471 ------GLDVEQAKALISVARAH--WFEE 491
>gi|68250159|ref|YP_249271.1| transcription elongation factor NusA [Haemophilus influenzae
86-028NP]
gi|145629346|ref|ZP_01785145.1| transcription elongation factor NusA [Haemophilus influenzae
22.1-21]
gi|145638849|ref|ZP_01794457.1| transcription elongation factor NusA [Haemophilus influenzae
PittII]
gi|68058358|gb|AAX88611.1| transcription elongation protein NusA [Haemophilus influenzae
86-028NP]
gi|144978849|gb|EDJ88572.1| transcription elongation factor NusA [Haemophilus influenzae
22.1-21]
gi|145271821|gb|EDK11730.1| transcription elongation factor NusA [Haemophilus influenzae
PittII]
gi|309750830|gb|ADO80814.1| Transcription elongation factor NusA [Haemophilus influenzae R2866]
Length = 495
Score = 461 bits (1185), Expect = e-127, Method: Composition-based stats.
Identities = 196/510 (38%), Positives = 324/510 (63%), Gaps = 20/510 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L A+AV+ EK + R+ + + +I + + + +DIRV INP+TG+ FR
Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIAISTKKKFEYETDIRVSINPKTGEFDTFRRWL 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV+ T +I+L+ A+ DP++ +G V D + + F R+A+Q+A+QVI K+REAER
Sbjct: 64 VVDEVKVPTKEITLEAAQFDDPNLQLGEYVEDQIESIAFDRIAMQTARQVISTKIREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186
+ +F+++ G+I++GTVK+V ++I+DLG ++ +I R++ + REN RPGDRV+ +
Sbjct: 124 AKVVEQFREEEGKIVTGTVKKVSRDSIILDLGNKAEAMIAREDMLPRENFRPGDRVRGVL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
Y V E + Q+ ++R+ P+ +++LF +EVPEI +++++ +RD GSRAK+AV S+D
Sbjct: 184 YKVNPEGKTAQLFVTRSKPEMLIELFRIEVPEIGEEMIEIRGAARDAGSRAKIAVKSNDK 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +++DED
Sbjct: 244 RIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIIVDEDNH 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V + L+ AIGR GQNVRLA+QLTGWT++++T +E + Q + N+ F+ A+
Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLATQLTGWTLNVMTTDELNAKHQAEDNKVLNLFINAL 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDITLQ 425
+DE A +LV EGF +EE+A V ++E+ +I+G DE+ E+Q RA+ + + +
Sbjct: 364 ELDEEFAQILVEEGFTSLEEIAYVPMNELTAIDGLEDEDLVEELQTRAKNAITAAAVAEE 423
Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485
+ +++ V + L ++ G++ + + L E I T+E+LA VDDL E
Sbjct: 424 EALKKANVEDRLLNLEGMNRHVAIKLAEKQITTLEELAEQGVDDLTDIEE---------- 473
Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
+Q +I+ AR + W +E
Sbjct: 474 -------LTAEQAADLIMAAR-NICWFGEE 495
>gi|146283631|ref|YP_001173784.1| transcription elongation factor NusA [Pseudomonas stutzeri A1501]
gi|145571836|gb|ABP80942.1| N utilization substance protein A [Pseudomonas stutzeri A1501]
gi|327482026|gb|AEA85336.1| transcription elongation factor NusA [Pseudomonas stutzeri DSM
4166]
Length = 493
Score = 460 bits (1184), Expect = e-127, Method: Composition-based stats.
Identities = 211/509 (41%), Positives = 325/509 (63%), Gaps = 22/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + ++V+ EK + V+ + ++ A + Y D+RVEIN G FR
Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRYEDDVDLRVEINRHNGSYETFRRWT 63
Query: 68 VVEEV--ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV++ E+ Q++L A++R+P +G V + + ++FGR+A Q+AKQVI+QKVREA
Sbjct: 64 VVDDEHFEDPAHQLALDQAQERNPDAKLGDVFEEKIESIEFGRIAAQTAKQVIVQKVREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER + ++D+VGEIISGTVK+V +VIVDLGN+ + ++ R++ I+RE R G RV++
Sbjct: 124 ERAQVVEAYRDRVGEIISGTVKKVTRDSVIVDLGNNAEALLAREDIIARETFRVGARVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ ++R E RGPQ++LSRT PQ +++LF +EVPEI G+++V SRDPGSRAK+AV S
Sbjct: 184 LLKEIRTENRGPQLILSRTAPQMLIELFRIEVPEIAEGLIEVMGASRDPGSRAKIAVRSK 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP GAC+GMRGSRVQAV E+ E++DIV+W + A FVINA+ PA V +++DED
Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGEIGGERVDIVLWDENPAQFVINAMAPAEVAAIIVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V ++ L+ AIGR GQNVRLASQLTGWT++++TE + +Q++ + + F++
Sbjct: 304 AHAMDIAVAEDNLAQAIGRGGQNVRLASQLTGWTLNVMTEADIQAKQQEETGDILRNFIE 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +LV EGF +EE+A V + E+ IEGFDE+ E++ RA++ L I
Sbjct: 364 ELDVDEELAQVLVEEGFTSLEEIAYVPMEEMLGIEGFDEDIVNELRTRAKDRLLTKAIAN 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +E+L ++ G+D ++ V L G+ T EDLA S
Sbjct: 424 EEKLADAQPAEDLLALDGMDKELAVELAVRGVITREDLAEQS-----------------I 466
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513
D L G +++ +I+ AR W E
Sbjct: 467 DDLLDIDGIDEERAGKLIMAARAH--WFE 493
>gi|261345162|ref|ZP_05972806.1| L factor protein [Providencia rustigianii DSM 4541]
gi|282566853|gb|EFB72388.1| L factor protein [Providencia rustigianii DSM 4541]
Length = 502
Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats.
Identities = 207/518 (39%), Positives = 319/518 (61%), Gaps = 26/518 (5%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EKS+ R+ + + ++ A + Y ++RVEI+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVEIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+V+EV T +I+L A+ DP + +GG V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLIVDEVTMPTREITLDAAQFEDPELQLGGYVEDQIESVVFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F+++ GEII+ VK+V N+ +DLGN+ + VI R++ + REN RPGDR++
Sbjct: 122 ERAMVVDQFREQQGEIITAQVKKVNRENITLDLGNNAEAVILREDMLPRENFRPGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+YDVR E RG Q+ ++R+ P+ +++LF +EVPEI I+++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYDVRPEARGAQLFVTRSRPEMLIELFRIEVPEIGEEIIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNE 357
++V V L+ AIGR GQNVRLA+QL W ++++T EE + Q + +
Sbjct: 302 NCTMDVAVESSNLAQAIGRNGQNVRLAAQLLKIHRGDDKWELNVMTAEELNAKHQAEAHA 361
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
+ F + +++DE A LV EGF+ +EELA V I E+ I+G DEET ++ RA+ L
Sbjct: 362 SIETFTKHLDIDEEFATTLVEEGFSTLEELAYVPIKELLEIDGLDEETVEVLRERAKAAL 421
Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477
I++ ++ + + +E+L ++ G+D + L GI T+EDLA +DDL+
Sbjct: 422 TTIELAQKESLGDNQPAEDLLNLDGMDRTLAYNLATRGICTLEDLAEQGIDDLIDIE--- 478
Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ +I+ AR + W +
Sbjct: 479 --------------GLNNEKAGELIMAAR-NICWFGND 501
>gi|56478754|ref|YP_160343.1| transcription elongation factor NusA [Aromatoleum aromaticum EbN1]
gi|56314797|emb|CAI09442.1| N utilization substance protein A [Aromatoleum aromaticum EbN1]
Length = 491
Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats.
Identities = 209/509 (41%), Positives = 334/509 (65%), Gaps = 23/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++ +D+V + ++ A + +D+RV I+ +TGD FR
Sbjct: 4 EILLLVDALAREKNVAKDIVFGALESALASATKKRINDEADVRVTIDRDTGDYESFRRWV 63
Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
V+ EEV N ++ + AR+ P I++G + +PL P+DFGR+ Q+AKQVI+Q++R+A
Sbjct: 64 VMPDEEVVNDEAEMGIIDAREMVPGIELGEYIEEPLEPIDFGRIGAQAAKQVILQRIRDA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER++ +F ++ ++SG++KR+E GN I+++G + VI RD+ I RENLR GDRVK++
Sbjct: 124 EREQILNDFLERKEHLVSGSIKRMERGNAIIEIGRLEAVIPRDQMIPRENLRVGDRVKAF 183
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ + R RGPQ++LSRT P+F+ KLF +EVPEI +G++++KA +RDPG RAK+AV S+D
Sbjct: 184 LLRIDRGARGPQLILSRTAPEFVGKLFELEVPEIEDGLLEIKACARDPGLRAKIAVQSND 243
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
IDP+G CVG+RGSRV AV E+ E+IDI+VWS D A FVI AL+PA V +V+DE+
Sbjct: 244 PRIDPIGTCVGLRGSRVTAVRNEIAGEQIDIIVWSADPAQFVIAALQPAEVVSIVVDEES 303
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
++V+V + L++AIGR GQNV+LAS+LTGWTI++++EEE + ++ + FM+
Sbjct: 304 HAMDVVVDENNLAIAIGRNGQNVKLASELTGWTINLMSEEESAQKTGQEREGLRELFMEK 363
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425
++VD+ +A +L+ EGF+ +EE+A V ++E+ IE FDE T E++ RAR L I +
Sbjct: 364 LDVDDELADILIDEGFSSLEEIAYVPLAEMLEIEAFDEGTVNELRNRARNVLLTEAIVTE 423
Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485
+ + VS++L ++ G+D + L +G+ T +DLA +VD+L+ +
Sbjct: 424 EHLE--NVSDDLINLEGMDKSLAATLARHGVLTRDDLADLAVDELVEIA----------- 470
Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEK 514
G +++ ++I AR W E+
Sbjct: 471 ------GIEQERASALISVARAH--WFEE 491
>gi|198282694|ref|YP_002219015.1| NusA antitermination factor [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218667138|ref|YP_002424886.1| transcription termination factor NusA [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|198247215|gb|ACH82808.1| NusA antitermination factor [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218519351|gb|ACK79937.1| transcription termination factor NusA [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 493
Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats.
Identities = 225/509 (44%), Positives = 333/509 (65%), Gaps = 22/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL +ADAVA+EK +DR+V+ + S+ A++ YG I V+++ +TGD RL E
Sbjct: 4 ELLYLADAVAHEKDVDREVIFLALEASLVSASKKKYGQDWHIAVDVDRKTGDYVTRRLWE 63
Query: 68 VVEEVENYTC---QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + QI L AR P + G + + LPP++FGR+A Q+AKQVI+QKVR+
Sbjct: 64 VVADDVADYDVDQQIRLSDARKTRPEAEPGDYLEEVLPPVEFGRIAAQTAKQVIVQKVRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AERDR +F + G+I+SG VKR+E GN IVD+G ++ ++ ++E + RE +RPGDRV++
Sbjct: 124 AERDRIVSDFAIRKGDIVSGLVKRMEKGNAIVDMGRAEAILPKEEMMPREAIRPGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
++ DVRR QRGPQ+ LSRT P+ ++KLF EVPEI NG++++ +RDPG RAKLAV S+
Sbjct: 184 HLQDVRRVQRGPQLFLSRTSPELLIKLFAQEVPEIGNGMIEIMGAARDPGLRAKLAVRSN 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D +DPVGACVG+RG+RVQ V+ EL+ E+IDIV+W+ D A++VINAL PA V+ +V+DE+
Sbjct: 244 DPRVDPVGACVGLRGNRVQTVINELKGERIDIVIWAADPASYVINALSPAEVSSIVVDEN 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V E LS AIGR GQNVRLA+QLTGWTI+I+TEEE R+++ + F+Q
Sbjct: 304 THSMDVVVGPEHLSQAIGRGGQNVRLATQLTGWTINILTEEEAQAKREEEESTFLNHFIQ 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+ VDE +A LLV+EGF +EE+A V ++E+ I+G DE E++ RAR+ L I
Sbjct: 364 DLGVDEDLAALLVSEGFTSIEEVAYVPVAEMMEIDGLDENLVGELRRRARDVLLNKAIAQ 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++++ +E+L S+ G+D + L G+ T EDLA + +L
Sbjct: 424 EEQVALSEPAEDLLSLKGMDKGLAHLLASKGVVTSEDLAELAASELCEM----------- 472
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513
+G +++ +++I+ AR W
Sbjct: 473 ------VGVDEERAKALILEARAP--WFA 493
>gi|167035704|ref|YP_001670935.1| transcription elongation factor NusA [Pseudomonas putida GB-1]
gi|325276164|ref|ZP_08141969.1| transcription elongation factor NusA [Pseudomonas sp. TJI-51]
gi|166862192|gb|ABZ00600.1| NusA antitermination factor [Pseudomonas putida GB-1]
gi|324098701|gb|EGB96742.1| transcription elongation factor NusA [Pseudomonas sp. TJI-51]
Length = 493
Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats.
Identities = 207/509 (40%), Positives = 319/509 (62%), Gaps = 22/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + ++V+ EK + V+ + ++ A + + D+RVEIN TG FR
Sbjct: 4 EVLLVVESVSNEKGVPPGVIFEALEVALATATKKRFEDEVDLRVEINRHTGSYETFRRWT 63
Query: 68 VVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV+ ++++ + L +D P +G V+ + + ++FGR+A Q+AKQVI+QKVREA
Sbjct: 64 VVDEADLDDPAIETWLDKIKDTHPEAKVGDVIEEKIESIEFGRIAAQTAKQVIVQKVREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER + ++++VGEIISGTVK+V NVIVDLGN+ + ++ R++ I RE R G R+++
Sbjct: 124 ERAQVVDAYRERVGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIIPRETFRVGVRLRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ ++R E RGPQ++LSRT PQ +++LF +EVPEI G+++V A SRDPGSRAK+AV S
Sbjct: 184 LLKEIRTENRGPQLILSRTAPQMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED
Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V ++ L+ AIGR GQNVRLASQLTGWT++++TE++ +Q + + + F+
Sbjct: 304 AHAMDIAVAEDNLAQAIGRGGQNVRLASQLTGWTLNVMTEKDIQAKQQAETGDILRNFID 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+ VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I
Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAIAT 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +E+L S+ G+D + L G+ EDLA S
Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAAELAVRGVVNREDLAEQS-----------------I 466
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513
D L G +++ +I+ AR W E
Sbjct: 467 DDLLDIDGIDEERAGKLIMAARAH--WFE 493
>gi|54298757|ref|YP_125126.1| transcription elongation factor NusA [Legionella pneumophila str.
Paris]
gi|53752542|emb|CAH13974.1| Transcription elongation protein nusA [Legionella pneumophila str.
Paris]
Length = 492
Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats.
Identities = 210/508 (41%), Positives = 327/508 (64%), Gaps = 23/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL +A+A++ E+ + +DV++ + +++ A R + G +R++I+ +TGD FR +
Sbjct: 4 ELLLVAEALSNERGVSKDVIILAIQAALESATRKILGLDIGVRIKIDSKTGDYETFRYWD 63
Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV EE+E Q+SL+ A++R PS +G + + +P ++FGR+ Q+A+QVI+QKVREA
Sbjct: 64 VVNEEELEFPDRQLSLEQAKERKPSAAVGDRIEEIIPSIEFGRIEAQTARQVIMQKVREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184
ER+ +F+ K+G++I GTVK+V NVI+DLG ++ + R E + E RP DRV++
Sbjct: 124 ERELIIDQFRSKLGQLIYGTVKKVTRDNVIIDLGGKAEAFLPRSEMLPHEMFRPNDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
Y+Y++ + RGPQ+ +SRT + +++LF +EVPEI I+ +KA +RDPG+RAK+AV ++
Sbjct: 184 YLYEITPQARGPQLFVSRTRNEMLIELFRIEVPEIGENIIDIKAAARDPGNRAKIAVKTN 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+GACVGMRG+RVQAV +EL E++DI++W + A VINA+ PA +T +V+DED
Sbjct: 244 DGRIDPIGACVGMRGARVQAVSSELGGERVDIILWDDNPAQLVINAMAPADITSIVVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V KEQLS AIGR GQNVRLASQLTGWT++++T EE Q++ ++ F
Sbjct: 304 THTMDLAVAKEQLSQAIGRNGQNVRLASQLTGWTLNVMTTEEFESKNQEESSKIVNLFTN 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
A+ +DE IA LLVA GF+ +EE+A V E+ +IE FDEE E++ RA + L + ++
Sbjct: 364 ALEIDEEIATLLVAHGFSSLEEVAYVPKEELLAIEEFDEEIVEELRNRANDKLLEMALSS 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
K + + L ++ G+ + L GI TMEDLA SVD+L+
Sbjct: 424 GKGLSG-TPDDSLINMEGMTEDLANKLASKGITTMEDLAEQSVDELMEIE---------- 472
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512
G +++ ++I+ AR W
Sbjct: 473 -------GISEEKAGALIMKAREP--WF 491
>gi|226329684|ref|ZP_03805202.1| hypothetical protein PROPEN_03594 [Proteus penneri ATCC 35198]
gi|225202870|gb|EEG85224.1| hypothetical protein PROPEN_03594 [Proteus penneri ATCC 35198]
Length = 502
Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats.
Identities = 209/518 (40%), Positives = 323/518 (62%), Gaps = 26/518 (5%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ +TGD FR
Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVCIDRKTGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
V+EV T +I+L+ A+ DPSI++GG + D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WVAVDEVTQPTREITLEAAQYEDPSIELGGYIEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F++++GEII+G VK+V N+ +DLGN+ + VI R++ + REN RPGDR++
Sbjct: 122 ERAMVVDQFREQLGEIITGVVKKVNRENITLDLGNNAEAVILREDMLPRENFRPGDRLRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+YDVR E RG Q+ ++R+ P+ +V+LF +EVPEI I+++KA +RDPGSRAK+AV ++
Sbjct: 182 VLYDVRTETRGAQLFVTRSRPEMLVELFRIEVPEIGEEIIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNE 357
++V V L+ AIGR GQNVRLA+QL W ++++T +E + Q + N
Sbjct: 302 KCTMDVAVESSNLAQAIGRNGQNVRLAAQLLKKHRGDDKWELNVMTADELNAKHQAEANA 361
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
+ F + +++DE A +LV EGF+ +EEL V ISE+ +I+G DE+T ++ RA+ L
Sbjct: 362 AIEIFTKHLDIDEDFATVLVEEGFSTLEELVYVPISELLAIDGLDEDTVEALRERAKAAL 421
Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477
I++ ++ + + +E+L ++ G++ + L GI T+EDLA +DDL
Sbjct: 422 TTIELAQKESLGDNQPAEDLLALEGLERSLAFDLAARGICTLEDLAEQGIDDLTDIE--- 478
Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ +I+ AR + W +
Sbjct: 479 --------------GLNSERAGELIMAAR-NICWFGND 501
>gi|15602625|ref|NP_245697.1| transcription elongation factor NusA [Pasteurella multocida subsp.
multocida str. Pm70]
gi|12721058|gb|AAK02844.1| NusA [Pasteurella multocida subsp. multocida str. Pm70]
Length = 494
Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats.
Identities = 202/509 (39%), Positives = 320/509 (62%), Gaps = 20/509 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL A+AV+ EK + R+ + + ++ + + Y D+RV IN +TG+ FR
Sbjct: 4 ELLLAAEAVSNEKLLPREKIFEALESALALSTKKKYEQEIDVRVVINTKTGEFDTFRRWL 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV N T +I+L+ A+ DP++ +G V D + + F R+ +Q+A+QVI K+REAER
Sbjct: 64 VVDEVTNPTKEITLEAAQFDDPNVQLGDYVEDQIESVAFDRITMQTARQVISTKIREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186
++ +F+ + GEI++GTVK+V N+++DLG ++ VI R++ + REN RPGDRV+ +
Sbjct: 124 NKIVEQFRSQEGEIVTGTVKKVNRDNIVLDLGQQAEAVILREDMLPRENFRPGDRVRGVL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
Y V E +G Q+ ++R P+ +++LF +EVPEI ++++K +RDPGSRAK+AV S+D
Sbjct: 184 YKVSPESKGAQLFVTRAKPEMLIELFRIEVPEIGEELIEIKNAARDPGSRAKIAVKSNDK 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA VT +V+DED
Sbjct: 244 RIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVTSIVVDEDSH 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V L+ AIGR GQNVRLA+QLT WT++++T +E + Q + N+ + FM A+
Sbjct: 304 AMDIAVEPANLAQAIGRNGQNVRLATQLTSWTLNVMTTDELNQKHQAEDNKVLKLFMNAL 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDITLQ 425
+DE AH+L+ EGF+ +EELA V +SE+ +I+G DE+ E+Q RA+ + + +
Sbjct: 364 EIDEDFAHILIEEGFSTLEELAYVSVSELTAIDGLEDEDLVEELQARAKNAITAAALAEE 423
Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485
+ +++ + + L ++ G++ I + L E I T+E+LA VDDL
Sbjct: 424 EALKQAHIEDRLLALEGMNRHIALKLAEKQITTLEELAEQGVDDLADIE----------- 472
Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEK 514
+Q I+ AR + W +
Sbjct: 473 ------DLTAEQAADFIMAAR-NICWFSE 494
>gi|1075364|pir||D64114 transcription termination-antitermination factor nusA - Haemophilus
influenzae (strain Rd KW20)
Length = 507
Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats.
Identities = 195/510 (38%), Positives = 323/510 (63%), Gaps = 20/510 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L A+AV+ EK + R+ + + +I + + + +DIRV INP+TG+ FR
Sbjct: 16 EILLAAEAVSNEKLLPREKIFEALESAIAISTKKKFEYETDIRVSINPKTGEFDTFRRWL 75
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV+ T +I+L+ A+ DP++ +G V D + + F R+A+Q+A+QVI K+REAER
Sbjct: 76 VVDEVKVPTKEITLEAAQFDDPNLQLGEYVEDQIESIAFDRIAMQTARQVISTKIREAER 135
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186
+ +F+++ G+I++GTVK+V ++I+DLG ++ +I R++ + REN RPGDRV+ +
Sbjct: 136 AKVVEQFREEEGKIVTGTVKKVSRDSIILDLGNKAEAMIAREDMLPRENFRPGDRVRGVL 195
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
Y V E + Q+ ++R+ P+ +++LF +EVPEI +++++ +RD GSRAK+AV S+D
Sbjct: 196 YKVNPEGKTAQLFVTRSKPEMLIELFRIEVPEIGEEMIEIRGAARDAGSRAKIAVKSNDK 255
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRG+RVQ + EL E++DIV+W + A FVINA+ PA V+ +++DED
Sbjct: 256 RIDPVGACVGMRGARVQVITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIIVDEDNH 315
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V + L+ AIGR GQNVRLA+QLTGWT++++T +E + Q + N+ F+ A+
Sbjct: 316 SMDIAVEADNLAQAIGRNGQNVRLATQLTGWTLNVMTTDELNAKHQAEDNKVLNLFINAL 375
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDITLQ 425
+DE A +LV EGF +EE+A V ++E+ +I+G DE+ E+Q RA+ + + +
Sbjct: 376 ELDEEFAQILVEEGFTSLEEIAYVPMNELTAIDGLEDEDLVEELQTRAKNAITAAAVAEE 435
Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485
+ +++ V + L ++ G++ + + L E I T+E+LA VDDL E
Sbjct: 436 EALKKANVEDRLLNLEGMNRHVAIKLAEKQITTLEELAEQGVDDLTDIEE---------- 485
Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
+Q +I+ AR + W +E
Sbjct: 486 -------LTAEQAADLIMAAR-NICWFGEE 507
>gi|302878488|ref|YP_003847052.1| NusA antitermination factor [Gallionella capsiferriformans ES-2]
gi|302581277|gb|ADL55288.1| NusA antitermination factor [Gallionella capsiferriformans ES-2]
Length = 490
Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats.
Identities = 210/508 (41%), Positives = 321/508 (63%), Gaps = 23/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA++ EK++D++VV S + ++ A + + +D+RV I+ TG+ FR E
Sbjct: 4 EVLLLVDALSREKNVDKEVVFSALESALASATKKRFEDEADVRVAIDRNTGEFESFRCWE 63
Query: 68 VVEEV--ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
V+++ E I L+ A RDP+I +GG + +PL +DFGR+ Q+AKQVI QK+R+A
Sbjct: 64 VMDDETFETPDLHIKLEEALKRDPAIALGGFIEEPLESVDFGRIGAQAAKQVIFQKIRDA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER++ +F D+ ++SGTVKR+E G+ IV+ G + ++ RD+ I +EN+R GDRV+++
Sbjct: 124 EREQILADFMDRKEHLVSGTVKRLERGSAIVEFGKIEALLPRDQMIPKENMRIGDRVRAH 183
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ V R RGPQV+LSRT +VKLF +EVPEI ++++ +RDPGSRAK+AV S D
Sbjct: 184 LLRVDRGPRGPQVILSRTSTDLLVKLFELEVPEIEENLLEIVGAARDPGSRAKIAVQSHD 243
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
IDP+G CVGMRGSRVQ+V EL E++DI++WS D AT+VIN+L PA V+ +V+DED
Sbjct: 244 QRIDPIGTCVGMRGSRVQSVTNELAGERVDIILWSEDPATYVINSLAPAEVSSIVVDEDR 303
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
++V+V +E L+ AIGR GQNVRLAS++TGW ++I+T E+ ++F + FM+
Sbjct: 304 HSMDVVVEEENLAQAIGRGGQNVRLASEMTGWELNIMTVEQAQEKHDQEFVKTRAIFMEK 363
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425
++VDE +A +LV EGFA +EE+A V + E+ IE FDE+T E++ RAR L + +
Sbjct: 364 LDVDEEVADILVQEGFATLEEVAYVPVEEMLEIETFDEDTVNELRSRARNALLNAALVSE 423
Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485
+K+ + L + G++ ++ L G+ T E LA VD+L+ S
Sbjct: 424 EKVEHGI--DGLLKLDGMNDELARELAVKGVTTQEQLADLDVDELVELS----------- 470
Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIE 513
G D ++I+ AR W
Sbjct: 471 ------GLDADVANALIMAARAP--WFA 490
>gi|70734336|ref|YP_257976.1| transcription elongation factor NusA [Pseudomonas fluorescens Pf-5]
gi|68348635|gb|AAY96241.1| N utilization substance protein A [Pseudomonas fluorescens Pf-5]
Length = 493
Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats.
Identities = 210/509 (41%), Positives = 320/509 (62%), Gaps = 22/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + ++V+ EK + V+ + ++ A + + D+RVEIN TG FR
Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVDLRVEINRHTGSYETFRRWT 63
Query: 68 VVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVE ++++ + L AR+ P +G V+ + + ++FGR+A Q+AKQVI+QKVREA
Sbjct: 64 VVEEADLDDPAVETWLSKARETHPDAKVGDVIEEKIESIEFGRIAAQTAKQVIVQKVREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER + +++++GEIISGTVK+V NVIVDLGN+ + ++ R++ ISRE R G R+++
Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRLRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S
Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED
Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDENPAQFVINAMSPAEVAAIIVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F+
Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFID 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+ VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I
Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAIAT 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +E+L S+ G+D + + L G+ T EDLA S
Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQS-----------------I 466
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513
D L G D+ +I+ AR W E
Sbjct: 467 DDLLDIDGIDDDRAGKLIMAARAH--WFE 493
>gi|145637799|ref|ZP_01793448.1| transcription elongation factor NusA [Haemophilus influenzae
PittHH]
gi|145268992|gb|EDK08946.1| transcription elongation factor NusA [Haemophilus influenzae
PittHH]
Length = 495
Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats.
Identities = 195/510 (38%), Positives = 323/510 (63%), Gaps = 20/510 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L A+AV+ EK + R+ + + +I + + + +DIRV INP+TG+ FR
Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIAISTKKKFEYETDIRVSINPKTGEFDTFRRWL 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV+ T +I+L+ A+ DP++ +G V D + + F R+A+Q+A+QVI K+REAER
Sbjct: 64 VVDEVKVPTKEITLEAAQFDDPNLQLGEYVEDQIESIAFDRIAMQTARQVISTKIREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186
+ +F+++ G+I++GTVK+V ++I+DLG ++ +I R++ + REN RPGDRV+ +
Sbjct: 124 AKVVEQFREEEGKIVTGTVKKVSRDSIILDLGNKAEAMITREDMLPRENFRPGDRVRGVL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
Y V E + Q+ ++R+ P+ +++LF +EVPEI +++++ +RD GSRAK+AV S+D
Sbjct: 184 YKVNPEGKTAQLFVTRSKPEMLIELFRIEVPEIGEEMIEIRGAARDAGSRAKIAVKSNDK 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +++DED
Sbjct: 244 RIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIIVDEDNH 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V + L+ AIGR GQNVRLA+QLTGWT++++T +E + Q + N+ F+ A+
Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLATQLTGWTLNVMTTDELNAKHQAEDNKVLNLFINAL 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDITLQ 425
+DE A +LV EGF +EE+A V ++E+ +I+G DE+ E+Q RA+ + + +
Sbjct: 364 ELDEEFAQILVEEGFTSLEEIAYVPMNELTAIDGLEDEDLVEELQTRAKNAITAAAVAEE 423
Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485
+ +++ + + L ++ G++ + L E I T+E+LA VDDL E
Sbjct: 424 EALKKANIEDRLLNLDGMNRHVAFRLAEKQITTLEELAEQGVDDLADIEE---------- 473
Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
+Q +I+ AR + W +E
Sbjct: 474 -------LTAEQAADLIMAAR-NICWFGEE 495
>gi|319762633|ref|YP_004126570.1| transcription termination factor nusa [Alicycliphilus denitrificans
BC]
gi|330824723|ref|YP_004388026.1| NusA antitermination factor [Alicycliphilus denitrificans K601]
gi|317117194|gb|ADU99682.1| transcription termination factor NusA [Alicycliphilus denitrificans
BC]
gi|329310095|gb|AEB84510.1| NusA antitermination factor [Alicycliphilus denitrificans K601]
Length = 494
Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats.
Identities = 200/514 (38%), Positives = 325/514 (63%), Gaps = 24/514 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
ELL + +A++ EK+++RDVVL + ++ +A + LY D+RV I+ ++GD FR
Sbjct: 2 NRELLMLVEAISREKNVERDVVLGAVESALAQATKKLYQGDVDLRVSIDRDSGDYETFRR 61
Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
VV + ++N + L AR+R P I++G + +P+ + GR+ +AKQVI+QK+
Sbjct: 62 WLVVPDDAGLQNPDAEELLMDARERVPDIEVGEYIEEPVESVPIGRIGAMAAKQVILQKI 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182
R+AER+ +F + +I +GTVKR++ G++I++ G +G +RR E I +ENLR GDRV
Sbjct: 122 RDAEREMLLNDFMSRGEKIFTGTVKRMDKGDLIIESGRVEGRLRRSEMIPKENLRNGDRV 181
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
++ I +V RG ++LSR+ P+FM++LF EVPEI G++++K+ +RDPGSRAK+AV
Sbjct: 182 RAMIMEVDLTLRGAPIILSRSAPEFMIELFRNEVPEIEQGLLEIKSCARDPGSRAKIAVL 241
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA V +V+D
Sbjct: 242 SHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSDDPAQFVIGALAPANVQSIVVD 301
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
E+ ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+ E + + + + + F
Sbjct: 302 EEKHAMDVVVDEENLAIAIGRGGQNVRLASELTGWKINIMDAAESAQKQADETDAARRLF 361
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
M+ ++VDE IA +L+AEGF +EE+A V + E+ IE FDE+T E++ RA++ L ++I
Sbjct: 362 MEKLDVDEEIADILIAEGFESLEEVAYVPLQEMLEIESFDEDTVNELRVRAKDALLTMEI 421
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482
++ + VS++L + G+ ++ L + G+ T +DLA ++D+L +
Sbjct: 422 AREESMG--SVSQDLRDLEGLTPELIAKLADAGVNTRDDLADLAIDELTELTGQ------ 473
Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
+ +++I+ AR W ++
Sbjct: 474 -----------SAEDAKALIMKAREH--WFTGQE 494
>gi|52842972|ref|YP_096771.1| transcription elongation factor NusA [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|52630083|gb|AAU28824.1| N utilization substance protein A [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
Length = 492
Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats.
Identities = 209/508 (41%), Positives = 327/508 (64%), Gaps = 23/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL +A+A++ E+ + +DV++ + +++ A R + G +R++I+ +TGD FR +
Sbjct: 4 ELLLVAEALSNERGVSKDVIILAIQAALESATRKILGLDIGVRIKIDSKTGDYETFRYWD 63
Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV EE+E Q+SL+ A++R PS +G + + +P ++FGR+ Q+A+QVI+QKVREA
Sbjct: 64 VVNEEELEFPDRQLSLEQAKERKPSAAVGDRIEEIIPSIEFGRIEAQTARQVIMQKVREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184
ER+ +F+ K+G++I GTVK+V N+I+DLG ++ + R E + E RP DRV++
Sbjct: 124 ERELIIDQFRSKLGQLIYGTVKKVTRDNIIIDLGGKAEAFLPRSEMLPHEMFRPNDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
Y+Y++ + RGPQ+ +SRT + +++LF +EVPEI I+ +KA +RDPG+RAK+AV ++
Sbjct: 184 YLYEITPQARGPQLFVSRTRNEMLIELFRIEVPEIGENIIDIKAAARDPGNRAKIAVKTN 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+GACVGMRG+RVQAV +EL E++DI++W + A VINA+ PA +T +V+DED
Sbjct: 244 DGRIDPIGACVGMRGARVQAVSSELGGERVDIILWDDNPAQLVINAMAPADITSIVVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V KEQLS AIGR GQNVRLASQLTGWT++++T EE Q++ ++ F
Sbjct: 304 THTMDLAVAKEQLSQAIGRNGQNVRLASQLTGWTLNVMTTEEFESKNQEESSKIVNLFTS 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
A+ +DE IA LLVA GF+ +EE+A V E+ +IE FDEE E++ RA + L + ++
Sbjct: 364 ALEIDEEIATLLVAHGFSSLEEVAYVPKEELLAIEEFDEEIVEELRNRANDKLLEMALSS 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
K + + L ++ G+ + L GI TMEDLA SVD+L+
Sbjct: 424 GKGLSG-TPDDSLINMEGMTEDLANKLASKGITTMEDLAEQSVDELMEIE---------- 472
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512
G +++ ++I+ AR W
Sbjct: 473 -------GISEEKAGALIMKAREP--WF 491
>gi|149926272|ref|ZP_01914534.1| transcription elongation factor NusA [Limnobacter sp. MED105]
gi|149825090|gb|EDM84302.1| transcription elongation factor NusA [Limnobacter sp. MED105]
Length = 489
Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats.
Identities = 211/508 (41%), Positives = 316/508 (62%), Gaps = 24/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + DA+A EK++D+D+V + ++ A + + D+RV I+ +TGD FR E
Sbjct: 4 ELLLLVDALAREKNVDKDIVFGALELALASATKKRFDEEVDVRVSIDRDTGDYDTFRRWE 63
Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV E+ + Q+ L A D ++G + + L P++FGR+ Q+AKQVI+Q+VR+A
Sbjct: 64 VVTEEDFYDPAYQMVLDQALKHDEEAEMGDFIEEELEPVEFGRIGAQAAKQVILQRVRDA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER++ +F D+ +I+ G VKR+E G+ IV+ G + + RD+ I RE+LRPGDRV++Y
Sbjct: 124 EREQILQDFLDRGDKIVIGQVKRMERGDAIVESGRIEARLPRDQMIPRESLRPGDRVRAY 183
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
++ V R RG QV+LSRT P+F+ LF MEVPEI G +++K +RDPG RAK+AV + D
Sbjct: 184 LWKVDRMARGQQVILSRTSPEFIKALFAMEVPEIEQGHLEIKGAARDPGMRAKIAVLAHD 243
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
IDP+G CVG+RGSRVQAV EL E++DIV+WS D A FVI AL PA V +V+DED
Sbjct: 244 RRIDPIGTCVGVRGSRVQAVTQELGGERVDIVLWSEDPAQFVIGALSPATVQSIVVDEDQ 303
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
+EV+V + +L+ AIGR GQNVRLAS LTGW I+I+T EE + +++ + + F
Sbjct: 304 HVMEVVVDEAELAQAIGRSGQNVRLASDLTGWQINIMTPEESAKRSEEEIGKLRELFTSK 363
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425
++VDE +A++L+ EGF+ ++++A V I+E+ IE FD +T E++ RAR L I +
Sbjct: 364 LDVDEKVANILIEEGFSGLQKVAYVPIAEMQEIEAFDADTVEELRTRARNALLTEAIARE 423
Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485
+ + G +L SI G+D+ + L I E LA +VD+L+ +
Sbjct: 424 EMVEGAG---DLMSIEGVDADLVGKLAAAEISDREGLAELAVDELVEIA----------- 469
Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIE 513
G +D+ +I+ AR W E
Sbjct: 470 ------GIEEDRARDIIMKARAH--WFE 489
>gi|254447046|ref|ZP_05060513.1| NusA antitermination factor [gamma proteobacterium HTCC5015]
gi|198263185|gb|EDY87463.1| NusA antitermination factor [gamma proteobacterium HTCC5015]
Length = 499
Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats.
Identities = 213/518 (41%), Positives = 325/518 (62%), Gaps = 25/518 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L +ADAV+ EK +D+DV+ + ++ A R + D RV IN E G FR
Sbjct: 3 NKEILLVADAVSNEKGVDKDVIFEALEIALATATRKKHPDDIDARVSINREDGSYETFRR 62
Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
V+E+ +EN ++ A D DPS +G V +P+ +D+GR+A Q+AKQVI+QKV
Sbjct: 63 WLVIEDDLVMENVDAELRHMDAIDIDPSYKVGDYVEEPIESVDYGRIAAQTAKQVIVQKV 122
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
REAER + EF+D+ GE++ G VKRVE GNV VDLG + +G I R+E I RE++RPGDR
Sbjct: 123 REAERMQVVEEFQDREGELVMGLVKRVERGNVYVDLGGNAEGFIPREEMIPRESVRPGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++ + +VR E RGPQ+ +SRT PQF+++LF +EVPEI G++ + + SRDPG RAK+AV
Sbjct: 183 IRGLLREVRSELRGPQLFVSRTDPQFLIELFKIEVPEIGQGMIDILSASRDPGVRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+D +DPVGACVGMRGSRVQ+V EL E++DI+++ + A FVINA+ PA V +V+
Sbjct: 243 RSNDPRLDPVGACVGMRGSRVQSVSNELSGERVDIILFDDNPAQFVINAMSPAEVVSIVV 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED +++ V E+LS AIGR GQN+RLAS+LT W ++++ EE + +++ ++ +
Sbjct: 303 DEDNNSMDLAVTNEKLSQAIGRGGQNIRLASELTDWQLNVMDEESYAAKNEEEAHKYVEV 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM+ ++VDE +A +LV EGF +EE+A V ++E IE FD+ E++ RAR+ L
Sbjct: 363 FMEQLDVDEEVATILVQEGFTSIEEVAYVPMAEFQEIEEFDDGIIEELRNRARDALLTKA 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
I ++ + ++L + +D ++ AL G+ TME+LA +VDDL+
Sbjct: 423 ILNEES--DAQPEQDLLDMETMDEEMAYALAAIGVTTMEELAEQAVDDLMVID------- 473
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVAD 519
+++ ++I+ AR W + + +
Sbjct: 474 ----------DMDEERASALIMKAREP--WFAEAEGQE 499
>gi|322514415|ref|ZP_08067458.1| N utilization substance A [Actinobacillus ureae ATCC 25976]
gi|322119663|gb|EFX91721.1| N utilization substance A [Actinobacillus ureae ATCC 25976]
Length = 493
Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats.
Identities = 197/508 (38%), Positives = 317/508 (62%), Gaps = 20/508 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L A+AV+ EK + ++ + + ++ + + D+RV I+ +TGD FR
Sbjct: 4 EILLAAEAVSNEKLLPKEAIFEALETALAISTKKKKEMDIDVRVVIDRKTGDFQTFRRWI 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVE+V N T +ISL+ A+ +PS+ +G +V D + + F R+ +Q+A+QVI K+REAER
Sbjct: 64 VVEQVHNMTREISLEAAQYENPSVQLGDIVEDEVDSIPFNRITMQTARQVISTKIREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186
++ +F+ ++ II+ TVK+V +I+DLGN ++ VI R++ + REN R GDRV+ +
Sbjct: 124 NKVIDQFRSQLNTIITATVKKVNRDQIILDLGNQAEAVIVREDMLPRENFRLGDRVRGVL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
Y ++ E +GPQ+ ++R P + +LF +EVPEI ++++K SRDPGSRAK+AV S D
Sbjct: 184 YAIKPESKGPQLFVTRAKPIMLEELFKLEVPEIGEDVIEIKGASRDPGSRAKIAVKSHDK 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+DED
Sbjct: 244 RIDPVGACVGMRGARVQAISNELGGERVDIVLWDDNPAQFVINAMAPADVSSIVVDEDKH 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V + L+ AIGR GQNVRLA+QLTGWT++++T E+ Q + N+ F+ ++
Sbjct: 304 AMDIAVESKNLAQAIGRNGQNVRLATQLTGWTLNVMTTEDLDKKHQAEDNKVIDLFVTSL 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDITLQ 425
+D+ A +LV EGF+ +EELA + +SE+ +I+G DE+ E+Q RA+ + + +
Sbjct: 364 EIDQEFAQILVDEGFSSLEELAFIPVSELTAIDGLEDEDLVEELQTRAKNVITAKALAEE 423
Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485
+ +++ + + L ++ G+D I L E GI T+E+LA + DDL E
Sbjct: 424 EALQQAHIEDRLLNLEGLDRHIAFKLAEKGITTLEELAEQATDDLSDIEE---------- 473
Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIE 513
D+ +I+ AR ++ W
Sbjct: 474 -------LSADKASELIMAAR-QICWFS 493
>gi|26991396|ref|NP_746821.1| transcription elongation factor NusA [Pseudomonas putida KT2440]
gi|148549780|ref|YP_001269882.1| transcription elongation factor NusA [Pseudomonas putida F1]
gi|24986465|gb|AAN70285.1|AE016669_3 N utilization substance protein A [Pseudomonas putida KT2440]
gi|148513838|gb|ABQ80698.1| NusA antitermination factor [Pseudomonas putida F1]
gi|313500621|gb|ADR61987.1| NusA [Pseudomonas putida BIRD-1]
Length = 493
Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats.
Identities = 207/509 (40%), Positives = 320/509 (62%), Gaps = 22/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + ++V+ EK + V+ + ++ A + + D+RVEIN TG FR
Sbjct: 4 EVLLVVESVSNEKGVPPGVIFEALEVALATATKKRFEDEVDLRVEINRHTGSYETFRRWT 63
Query: 68 VVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV+ ++++ + L +D P +G V+ + + ++FGR+A Q+AKQVI+QKVREA
Sbjct: 64 VVDEADLDDPAIETWLDKIKDTHPEAKVGDVIEEKIESIEFGRIAAQTAKQVIVQKVREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER + ++++VGEIISGTVK+V NVIVDLGN+ + ++ R++ I RE R G R+++
Sbjct: 124 ERAQVVDAYRERVGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIIPRETFRVGVRLRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ ++R E RGPQ++LSRT PQ +++LF +EVPEI G+++V A SRDPGSRAK+AV S
Sbjct: 184 LLKEIRTENRGPQLILSRTAPQMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED
Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V ++ L+ AIGR GQNVRLASQLTGWT++++TE++ +Q + + + F++
Sbjct: 304 AHAMDIAVAEDNLAQAIGRGGQNVRLASQLTGWTLNVMTEKDIQAKQQAETGDILRNFIE 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+ VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I
Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAIAT 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +E+L S+ G+D + L G+ EDLA S
Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAAELAVRGVVNREDLAEQS-----------------I 466
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513
D L G +++ +I+ AR W E
Sbjct: 467 DDLLDIDGIDEERAGKLIMAARAH--WFE 493
>gi|121998529|ref|YP_001003316.1| transcription elongation factor NusA [Halorhodospira halophila SL1]
gi|121589934|gb|ABM62514.1| NusA antitermination factor [Halorhodospira halophila SL1]
Length = 501
Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats.
Identities = 222/516 (43%), Positives = 334/516 (64%), Gaps = 25/516 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + +A + EK +DR+V+ + ++ A R + D RV ++ ++GD + +R E
Sbjct: 4 EILLVVEATSNEKGVDREVIFEAIEAALASATRKRHLEDIDARVAVDRQSGDYATYRRWE 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + VE QISL+ AR+RD + ++GG V +P+ +DFGR+A Q+AKQVI+QKVRE
Sbjct: 64 VVPDEESVEEPQRQISLERARERDENAEVGGYVEEPIESVDFGRIAAQTAKQVIVQKVRE 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVK 183
AER + ++ ++GE+++G+VKR+E G+ I+DLG N++ ++ R++ I RE +RP DR++
Sbjct: 124 AERAQIVDAYQHRIGELVNGSVKRMERGSAIIDLGENTEALVSREDLIPREAVRPNDRIR 183
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
Y+ DVR E RGPQ+ +SRT +F+V+LF +EVPE+ G++++ +RDPG RAK++V +
Sbjct: 184 GYLRDVRSEPRGPQLFVSRTANEFLVELFKIEVPEVGQGLIEILGAARDPGMRAKISVRA 243
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
D IDPVGACVGMRGSRVQAV EL E+IDI+ W + A FVINAL PA V +V+DE
Sbjct: 244 LDPRIDPVGACVGMRGSRVQAVSNELSGERIDIIPWDENPAQFVINALAPAEVESIVVDE 303
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
D G ++V V +EQLS AIGR GQNVRLAS+LTGW ++++T EE +++ E Q F+
Sbjct: 304 DRGAMDVAVAEEQLSQAIGRGGQNVRLASELTGWELNVMTAEEAEAKSEREAGELVQLFV 363
Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423
+ ++VDE +A +LV EGF+ +EE+A V +E+ IE FDE+ ++ RAR+ L I
Sbjct: 364 EHLDVDEDVAGVLVQEGFSSIEEVAYVPTAELLEIEEFDEDIVEALRSRARDVLLAQAIA 423
Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483
++ E SEEL ++ G+D + AL E G+ T+EDLA SVDDL+
Sbjct: 424 --EEANENQPSEELLALEGMDEQTAKALAERGVATVEDLADQSVDDLMEVE--------- 472
Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVAD 519
G +D+ +I+ AR W + +
Sbjct: 473 --------GMDEDRAGQLIMKAREP--WFAASEGGE 498
>gi|262277759|ref|ZP_06055552.1| transcription termination factor [alpha proteobacterium HIMB114]
gi|262224862|gb|EEY75321.1| transcription termination factor [alpha proteobacterium HIMB114]
Length = 514
Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats.
Identities = 270/505 (53%), Positives = 368/505 (72%)
Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64
+ EL++IADAVA EKSID+D+VLS M +I+KAAR+ YG+ ++I V I+ ETG I L R
Sbjct: 7 DSTELIRIADAVAAEKSIDKDLVLSSMETAIEKAARTRYGSENEIYVSIDRETGIIELGR 66
Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
L+VVE+V +ISL A+ +DPS +IGG + + LPP+DFGR+A Q+AKQVI ++R+
Sbjct: 67 KLKVVEKVLESHSEISLDEAKQKDPSAEIGGEIKEELPPIDFGRIAAQTAKQVISVQIRD 126
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AERDRQ+ EFKDKVGEI+SG VKR E+GN+IVDL S+ +IRR+E I RENL+ GDRVK+
Sbjct: 127 AERDRQFNEFKDKVGEILSGIVKRSEFGNIIVDLQKSEAIIRREELIPRENLKNGDRVKA 186
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
Y YDVRRE +GPQ+ LSR HPQF+ KLF EVPEIY G + +K+V+RDPGSRAK+ V S
Sbjct: 187 YCYDVRRENKGPQIFLSRAHPQFLAKLFQQEVPEIYEGTISIKSVARDPGSRAKICVQSK 246
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
DSSIDPVGACVGMRGSRVQ +V EL+ EKIDI+ W+ D + V++AL PA V KVVLD++
Sbjct: 247 DSSIDPVGACVGMRGSRVQTIVNELQGEKIDIINWTEDVGSLVVSALAPAEVMKVVLDQE 306
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
R EV++ + LS AIGRRGQNVRLAS+L + IDI+T++E+S RQ +F E + ++
Sbjct: 307 NRRAEVVIDENNLSKAIGRRGQNVRLASKLLDYEIDILTDKEESEKRQSEFKENSSKLIK 366
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
A+ +D +A LLV+EGF ++++ + E I+GFDEETA E+Q RA+E+LE + +
Sbjct: 367 ALEIDTTMAQLLVSEGFNTIKDINNANVDEFLKIDGFDEETAKELQDRAKEFLEEEEKEI 426
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
K++ELG+ E+L + G+ + + LGE IKT++D A S D+++G + G EKF
Sbjct: 427 ASKVQELGIEEDLANHKGLTLGMLLTLGEENIKTLKDFAELSTDEIVGGYDEIKGKREKF 486
Query: 485 DGFLSSLGTPKDQVESMIIHARYKM 509
DG L P+ E +I+ AR K+
Sbjct: 487 DGVLEEFNIPRKDAEDLIMRARKKV 511
>gi|16273197|ref|NP_439435.1| transcription elongation factor NusA [Haemophilus influenzae Rd
KW20]
gi|260581405|ref|ZP_05849219.1| transcription termination factor NusA [Haemophilus influenzae RdAW]
gi|260582501|ref|ZP_05850292.1| transcription termination factor NusA [Haemophilus influenzae
NT127]
gi|1171872|sp|P43915|NUSA_HAEIN RecName: Full=Transcription elongation protein nusA
gi|1574741|gb|AAC22932.1| N utilization substance protein A (nusA) [Haemophilus influenzae Rd
KW20]
gi|260091947|gb|EEW75896.1| transcription termination factor NusA [Haemophilus influenzae RdAW]
gi|260094481|gb|EEW78378.1| transcription termination factor NusA [Haemophilus influenzae
NT127]
Length = 495
Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats.
Identities = 195/510 (38%), Positives = 323/510 (63%), Gaps = 20/510 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L A+AV+ EK + R+ + + +I + + + +DIRV INP+TG+ FR
Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIAISTKKKFEYETDIRVSINPKTGEFDTFRRWL 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV+ T +I+L+ A+ DP++ +G V D + + F R+A+Q+A+QVI K+REAER
Sbjct: 64 VVDEVKVPTKEITLEAAQFDDPNLQLGEYVEDQIESIAFDRIAMQTARQVISTKIREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186
+ +F+++ G+I++GTVK+V ++I+DLG ++ +I R++ + REN RPGDRV+ +
Sbjct: 124 AKVVEQFREEEGKIVTGTVKKVSRDSIILDLGNKAEAMIAREDMLPRENFRPGDRVRGVL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
Y V E + Q+ ++R+ P+ +++LF +EVPEI +++++ +RD GSRAK+AV S+D
Sbjct: 184 YKVNPEGKTAQLFVTRSKPEMLIELFRIEVPEIGEEMIEIRGAARDAGSRAKIAVKSNDK 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRG+RVQ + EL E++DIV+W + A FVINA+ PA V+ +++DED
Sbjct: 244 RIDPVGACVGMRGARVQVITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIIVDEDNH 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V + L+ AIGR GQNVRLA+QLTGWT++++T +E + Q + N+ F+ A+
Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLATQLTGWTLNVMTTDELNAKHQAEDNKVLNLFINAL 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDITLQ 425
+DE A +LV EGF +EE+A V ++E+ +I+G DE+ E+Q RA+ + + +
Sbjct: 364 ELDEEFAQILVEEGFTSLEEIAYVPMNELTAIDGLEDEDLVEELQTRAKNAITAAAVAEE 423
Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485
+ +++ V + L ++ G++ + + L E I T+E+LA VDDL E
Sbjct: 424 EALKKANVEDRLLNLEGMNRHVAIKLAEKQITTLEELAEQGVDDLTDIEE---------- 473
Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
+Q +I+ AR + W +E
Sbjct: 474 -------LTAEQAADLIMAAR-NICWFGEE 495
>gi|145630836|ref|ZP_01786614.1| transcription elongation factor NusA [Haemophilus influenzae R3021]
gi|145633248|ref|ZP_01788979.1| transcription elongation factor NusA [Haemophilus influenzae 3655]
gi|145634372|ref|ZP_01790082.1| transcription elongation factor NusA [Haemophilus influenzae
PittAA]
gi|145641320|ref|ZP_01796899.1| transcription elongation factor NusA [Haemophilus influenzae R3021]
gi|148825866|ref|YP_001290619.1| transcription elongation factor NusA [Haemophilus influenzae
PittEE]
gi|229845094|ref|ZP_04465229.1| transcription elongation factor NusA [Haemophilus influenzae
6P18H1]
gi|229846821|ref|ZP_04466928.1| transcription elongation factor NusA [Haemophilus influenzae
7P49H1]
gi|144983718|gb|EDJ91178.1| transcription elongation factor NusA [Haemophilus influenzae R3021]
gi|144986094|gb|EDJ92684.1| transcription elongation factor NusA [Haemophilus influenzae 3655]
gi|145268352|gb|EDK08346.1| transcription elongation factor NusA [Haemophilus influenzae
PittAA]
gi|145273863|gb|EDK13730.1| transcription elongation factor NusA [Haemophilus influenzae
22.4-21]
gi|148716026|gb|ABQ98236.1| transcription elongation factor NusA [Haemophilus influenzae
PittEE]
gi|229810310|gb|EEP46029.1| transcription elongation factor NusA [Haemophilus influenzae
7P49H1]
gi|229811930|gb|EEP47624.1| transcription elongation factor NusA [Haemophilus influenzae
6P18H1]
gi|309973011|gb|ADO96212.1| Transcription elongation factor NusA [Haemophilus influenzae R2846]
Length = 495
Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats.
Identities = 195/510 (38%), Positives = 323/510 (63%), Gaps = 20/510 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L A+AV+ EK + R+ + + +I + + + +DIRV INP+TG+ FR
Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIAISTKKKFEYETDIRVSINPKTGEFDTFRRWL 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV+ T +I+L+ A+ DP++ +G V D + + F R+A+Q+A+QVI K+REAER
Sbjct: 64 VVDEVKVPTKEITLEAAQFDDPNLQLGEYVEDQIESIAFDRIAMQTARQVISTKIREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186
+ +F+++ G+I++GTVK+V ++I+DLG ++ +I R++ + REN RPGDRV+ +
Sbjct: 124 AKVVEQFREEEGKIVTGTVKKVSRDSIILDLGNKAEAMIAREDMLPRENFRPGDRVRGVL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
Y V E + Q+ ++R+ P+ +++LF +EVPEI +++++ +RD GSRAK+AV S+D
Sbjct: 184 YKVNPEGKTAQLFVTRSKPEMLIELFRIEVPEIGEEMIEIRGAARDAGSRAKIAVKSNDK 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +++DED
Sbjct: 244 RIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIIVDEDNH 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V + L+ AIGR GQNVRLA+QLTGWT++++T +E + Q + N+ F+ A+
Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLATQLTGWTLNVMTTDELNAKHQAEDNKVLNLFINAL 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDITLQ 425
+DE A +LV EGF +EE+A V ++E+ +I+G DE+ E+Q RA+ + + +
Sbjct: 364 ELDEEFAQILVEEGFTSLEEIAYVPMNELTAIDGLEDEDLVEELQTRAKNAITAAAVAEE 423
Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485
+ +++ + + L ++ G++ + L E I T+E+LA VDDL E
Sbjct: 424 EALKKANIEDRLLNLDGMNRHVAFRLAEKQITTLEELAEQGVDDLADIEE---------- 473
Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
+Q +I+ AR + W +E
Sbjct: 474 -------LTAEQAADLIMAAR-NICWFGEE 495
>gi|296108417|ref|YP_003620118.1| N utilization substance protein A [Legionella pneumophila 2300/99
Alcoy]
gi|295650319|gb|ADG26166.1| N utilization substance protein A [Legionella pneumophila 2300/99
Alcoy]
Length = 492
Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats.
Identities = 209/508 (41%), Positives = 327/508 (64%), Gaps = 23/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL +A+A++ E+ + +DV++ + +++ A R + G +R++I+ +TGD FR +
Sbjct: 4 ELLLVAEALSNERGVSKDVIILAIQAALESATRKILGLDIGVRIKIDSKTGDYETFRYWD 63
Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV EE+E Q+SL+ A++R PS +G + + +P ++FGR+ Q+A+QVI+QKVREA
Sbjct: 64 VVNEEELEFPDRQLSLEQAKERKPSAAVGDRIEEIIPSIEFGRIEAQTARQVIMQKVREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184
ER+ +F+ K+G++I GTVK+V N+I+DLG ++ + R E + E RP DRV++
Sbjct: 124 ERELIIDQFRSKLGQLIYGTVKKVTRDNIIIDLGGKAEAFLPRSEMLPHEMFRPNDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
Y+Y++ + RGPQ+ +SRT + +++LF +EVPEI I+ +KA +RDPG+RAK+AV ++
Sbjct: 184 YLYEITPQARGPQLFVSRTRNEMLIELFRIEVPEIGENIIDIKAAARDPGNRAKIAVKTN 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+GACVGMRG+RVQAV +EL E++DI++W + A VINA+ PA +T +V+DED
Sbjct: 244 DGRIDPIGACVGMRGARVQAVSSELGGERVDIILWDDNPAQLVINAMAPADITSIVVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V KEQLS AIGR GQNVRLASQLTGWT++++T EE Q++ ++ F
Sbjct: 304 THTMDLAVAKEQLSQAIGRNGQNVRLASQLTGWTLNVMTMEEFESKNQEESSKIVNLFTS 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
A+ +DE IA LLVA GF+ +EE+A V E+ +IE FDEE E++ RA + L + ++
Sbjct: 364 ALEIDEEIATLLVAHGFSSLEEVAYVPKEELLAIEEFDEEIVEELRNRANDKLLEMALSS 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
K + + L ++ G+ + L GI TMEDLA SVD+L+
Sbjct: 424 GKGLSG-TPDDSLINMEGMTEDLANKLASKGITTMEDLAEQSVDELMEIE---------- 472
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512
G +++ ++I+ AR W
Sbjct: 473 -------GISEEKAGALIMKAREP--WF 491
>gi|209694189|ref|YP_002262117.1| transcription elongation factor NusA [Aliivibrio salmonicida
LFI1238]
gi|208008140|emb|CAQ78282.1| transcription elongation protein NusA [Aliivibrio salmonicida
LFI1238]
Length = 495
Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats.
Identities = 194/511 (37%), Positives = 313/511 (61%), Gaps = 19/511 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + ++RV I+ +TG + FR
Sbjct: 2 NKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKSALEIEVRVAIDRKTGAVETFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
V +VE+ T +IS++ A+ D +I+IGG + D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WVAVAQVEHPTLEISIEAAQFEDETIEIGGFIEDDIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184
ER +F D GE+I+G VK+V +IVDLG N++ VI R++ + REN RPGDRV+
Sbjct: 122 ERAMIVEQFIDNEGELITGIVKKVNRDAIIVDLGSNAEAVILREDQLPRENFRPGDRVRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y V+ E RG Q+ ++R+ + +LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 LLYAVKPEARGFQLFMTRSKGVMLTELFRVEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +L E+IDIV+W + A FVIN++ PA V +++DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSNDLGGERIDIVLWDDNPAQFVINSMAPAEVASIIVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V + L+ AIGR GQNVRLASQLTGW ++++T + + Q++ F++
Sbjct: 302 NNTMDIAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVADLNKKHQEEAQGSIDAFVK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++D A LLV EGF +EE+A V ++E+ +E DEET ++ RA+E L + +
Sbjct: 362 HLDIDADFAQLLVEEGFTTLEEIAYVPVNELLEVEALDEETVDLLRTRAKEALTTLALAQ 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + + +E+L ++ G++ ++ G+ T+EDLA VD+L
Sbjct: 422 EESLDGIEPAEDLLALEGLERELAFKFAAKGVITLEDLADQGVDELSDIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
+++ +I+ AR + W E
Sbjct: 472 -------DLTEERAGELIMAAR-NICWFSDE 494
>gi|104780027|ref|YP_606525.1| transcription elongation factor NusA [Pseudomonas entomophila L48]
gi|95109014|emb|CAK13710.1| transcription termination/antitermination, L factor (N utilization
substance protein A) [Pseudomonas entomophila L48]
Length = 493
Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats.
Identities = 206/509 (40%), Positives = 318/509 (62%), Gaps = 22/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + ++V+ EK + V+ + ++ A + + D+RVEIN TG FR
Sbjct: 4 EVLLVVESVSNEKGVPPGVIFEALEVALATATKKRFEDEVDLRVEINRHTGSYETFRRWT 63
Query: 68 VVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV+ ++++ + L +D P IG V+ + + ++FGR+A Q+AKQVI+QKVREA
Sbjct: 64 VVDENDLDDPAIETWLSKIQDTHPDAKIGDVIEEKIESIEFGRIAAQTAKQVIVQKVREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER + ++++VGEIISGTVK+V NVIVDLGN+ + ++ R++ I RE R G R+++
Sbjct: 124 ERAQVVDAYRERVGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIIPRETFRVGVRLRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ ++R E RGPQ++LSRT PQ +++LF +EVPEI G+++V A SRDPGSRAK+AV S
Sbjct: 184 LLKEIRTENRGPQLVLSRTAPQMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED
Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDENPAQFVINAMSPAEVAAIIVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V ++ L+ AIGR GQNVRLASQLT WT++++TE++ +Q + + + F+
Sbjct: 304 AHAMDIAVAEDNLAQAIGRGGQNVRLASQLTAWTLNVMTEKDIQAKQQAETGDILRNFID 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+ VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I
Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAIAT 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +++L S+ G+D + L G+ EDLA S
Sbjct: 424 EEKLADAHPADDLLSLEGMDKDLAAELAVRGVVNREDLAEQS-----------------I 466
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513
D L G +++ +I+ AR W E
Sbjct: 467 DDLLDIDGIDEERAGKLIMAARAH--WFE 493
>gi|165976050|ref|YP_001651643.1| transcription elongation factor NusA [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|190149948|ref|YP_001968473.1| transcription elongation protein NusA [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|303249647|ref|ZP_07335852.1| transcription elongation factor NusA [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|303253712|ref|ZP_07339849.1| transcription elongation factor NusA [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|307247608|ref|ZP_07529651.1| Transcription termination factor NusA [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|307249837|ref|ZP_07531813.1| Transcription termination factor NusA [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|307252189|ref|ZP_07534087.1| Transcription termination factor NusA [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|307263276|ref|ZP_07544894.1| Transcription termination factor NusA [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|165876151|gb|ABY69199.1| transcription termination-antitermination factor, N utilization
substance protein A [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|189915079|gb|ACE61331.1| transcription elongation protein NusA [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|302647437|gb|EFL77656.1| transcription elongation factor NusA [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|302651459|gb|EFL81610.1| transcription elongation factor NusA [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306855878|gb|EFM88038.1| Transcription termination factor NusA [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|306858139|gb|EFM90219.1| Transcription termination factor NusA [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|306860333|gb|EFM92348.1| Transcription termination factor NusA [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306871338|gb|EFN03064.1| Transcription termination factor NusA [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 493
Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats.
Identities = 201/508 (39%), Positives = 318/508 (62%), Gaps = 20/508 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L A+AV+ EK + ++ + + ++ + + D+RV I+ +TGD FR
Sbjct: 4 EILLAAEAVSNEKLLPKEAIFEALETALAISTKKKKEMDIDVRVVIDRKTGDFQTFRRWI 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVE+V N T +ISL+ A+ +PS+ +G +V D + + F R+ +Q+A+QVI K+REAER
Sbjct: 64 VVEQVHNMTREISLEAAQYENPSVQLGDIVEDEVDSIPFDRITMQTARQVISTKIREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186
++ +F+ ++ II+ TVK+V +I+DLGN ++ VI R++ + REN RPGDRV+ +
Sbjct: 124 NKVIEQFRSQLNTIITATVKKVNREQIILDLGNQAEAVIVREDMLPRENFRPGDRVRGVL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
Y ++ E +GPQ+ L+R P + +LF +EVPEI ++++K SRDPGSRAK+AV S D
Sbjct: 184 YAIKPESKGPQLFLTRAKPVMLEELFKLEVPEIGEDVIEIKGASRDPGSRAKIAVKSHDK 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+DED
Sbjct: 244 RIDPVGACVGMRGARVQAISNELGGERVDIVLWDDNPAQFVINAMAPAEVSAIVVDEDKH 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V + L+ AIGR GQNVRLA+QLTGWT++++T E+ Q + N+ F+ A+
Sbjct: 304 AMDIAVEGKNLAQAIGRNGQNVRLATQLTGWTLNVMTTEDLDKKHQAEDNKVISLFVSAL 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDITLQ 425
+D+ A LLV EGF+ +EE+A + +SE+ +I+G DE A E+Q RA+ + + +
Sbjct: 364 EIDDEFAQLLVDEGFSSLEEIAFIPVSELTAIDGIEDENLAEELQTRAKNAITAKALAEE 423
Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485
+ +++ + + L ++ G+D I L E GI T+E+LA + DDL E
Sbjct: 424 EALKQAHIEDRLLNLEGLDRHIAFKLAEKGITTLEELAEQATDDLSDIEE---------- 473
Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIE 513
D+ +I+ AR ++ W
Sbjct: 474 -------LSADKASELIMAAR-QICWFS 493
>gi|32033691|ref|ZP_00133986.1| COG0195: Transcription elongation factor [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126208120|ref|YP_001053345.1| transcription elongation factor NusA [Actinobacillus
pleuropneumoniae L20]
gi|126096912|gb|ABN73740.1| transcription elongation protein NusA [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
Length = 493
Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats.
Identities = 201/508 (39%), Positives = 317/508 (62%), Gaps = 20/508 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L A+AV+ EK + ++ + + ++ + + D+RV I+ +TGD FR
Sbjct: 4 EILLAAEAVSNEKLLPKEAIFEALETALAISTKKKKEMDIDVRVVIDRKTGDFQTFRRWI 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVE+V N T +ISL A+ +PS+ +G +V D + + F R+ +Q+A+QVI K+REAER
Sbjct: 64 VVEQVHNMTREISLDAAQYENPSVQLGDIVEDEVDSIPFDRITMQTARQVISTKIREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186
++ +F+ ++ II+ TVK+V +I+DLGN ++ VI R++ + REN RPGDRV+ +
Sbjct: 124 NKVIEQFRSQLNTIITATVKKVNREQIILDLGNQAEAVIVREDMLPRENFRPGDRVRGVL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
Y ++ E +GPQ+ L+R P + +LF +EVPEI ++++K SRDPGSRAK+AV S D
Sbjct: 184 YAIKPESKGPQLFLTRAKPVMLEELFKLEVPEIGEDVIEIKGASRDPGSRAKIAVKSHDK 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+DED
Sbjct: 244 RIDPVGACVGMRGARVQAISNELGGERVDIVLWDDNPAQFVINAMAPAEVSAIVVDEDKH 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V + L+ AIGR GQNVRLA+QLTGWT++++T E+ Q + N+ F+ A+
Sbjct: 304 AMDIAVEGKNLAQAIGRNGQNVRLATQLTGWTLNVMTTEDLDKKHQAEDNKVISLFVSAL 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDITLQ 425
+D+ A LLV EGF+ +EE+A + +SE+ +I+G DE A E+Q RA+ + + +
Sbjct: 364 EIDDEFAQLLVDEGFSSLEEIAFIPVSELTAIDGIEDENLAEELQTRAKNAITAKALAEE 423
Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485
+ +++ + + L ++ G+D I L E GI T+E+LA + DDL E
Sbjct: 424 EALKQAHIEDRLLNLEGLDRHIAFKLAEKGITTLEELAEQATDDLSDIEE---------- 473
Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIE 513
D+ +I+ AR ++ W
Sbjct: 474 -------LSADKASELIMAAR-QICWFS 493
>gi|308050585|ref|YP_003914151.1| NusA antitermination factor [Ferrimonas balearica DSM 9799]
gi|307632775|gb|ADN77077.1| NusA antitermination factor [Ferrimonas balearica DSM 9799]
Length = 500
Score = 458 bits (1178), Expect = e-126, Method: Composition-based stats.
Identities = 207/514 (40%), Positives = 326/514 (63%), Gaps = 24/514 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L +A+AV+ EK++ R+ + + ++ A + Y D+RV I+ TG+ FR E
Sbjct: 4 EILLVAEAVSNEKAVPREKIFEALEFALATATKKKYELEIDVRVAIDQRTGEFDTFRRWE 63
Query: 68 VVEE---VENYTCQISLKVAR--DRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
V+E+ +E T Q+ L AR + D +I++G V + + + F R+ Q+AKQVI+QKV
Sbjct: 64 VIEDDAEMEVPTRQVFLSSARAMEEDETIEVGDFVEEQIESITFDRITTQTAKQVIVQKV 123
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
REAER + +FKDK GE+++G VK+V ++IVDLGN+ D ++ R+E + REN RPGDR
Sbjct: 124 REAERAQVVEQFKDKEGELVTGVVKKVNRDSIIVDLGNNADAILFREEMLPRENFRPGDR 183
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++ ++ VR E RG Q+ LSRT P+ +++LF +EVPEI ++++ +RDPGSRAK+AV
Sbjct: 184 VRALLHSVRLESRGSQLFLSRTRPEMLIELFRIEVPEIGEEMIEIVGAARDPGSRAKIAV 243
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+D IDPVGACVGMRG+RVQAV EL E+IDIV+W+ ++A +VINA+ PA V+ +V+
Sbjct: 244 KSNDKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWNDNTAQYVINAMAPADVSSIVV 303
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DED ++V V K+ L+ AIGR GQNVRLASQ+TGW ++++T E+ Q + +
Sbjct: 304 DEDAKSMDVAVEKDSLAQAIGRNGQNVRLASQVTGWELNVMTTEDMQEKHQAESAKLVTQ 363
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F++++++D+ A +LV EGF +EE+A V ++E+ IEG DEET ++ RA+ L
Sbjct: 364 FVESLDIDDEFASVLVDEGFTSLEEIAYVPVNELLEIEGLDEETVEALRERAKAALTTRA 423
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ ++ + +E+L ++ G++ + L G+ T+EDLA +DDL E
Sbjct: 424 LASEEALDGAEPAEDLLNLEGMERHLAYVLASRGVVTLEDLADQGIDDLSDIEE------ 477
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
++Q +I+ AR + W ++
Sbjct: 478 -----------LSEEQAGELIMAAR-NICWFGED 499
>gi|54295603|ref|YP_128018.1| transcription elongation factor NusA [Legionella pneumophila str.
Lens]
gi|53755435|emb|CAH16931.1| Transcription elongation protein nusA [Legionella pneumophila str.
Lens]
gi|307611645|emb|CBX01332.1| transcription elongation protein nusA [Legionella pneumophila 130b]
Length = 492
Score = 458 bits (1178), Expect = e-126, Method: Composition-based stats.
Identities = 209/508 (41%), Positives = 327/508 (64%), Gaps = 23/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL +A+A++ E+ + +DV++ + +++ A R + G +R++I+ +TGD FR +
Sbjct: 4 ELLLVAEALSNERGVSKDVIILAIQAALESATRKILGLDIGVRIKIDSKTGDYETFRYWD 63
Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV EE+E Q+SL+ A++R PS +G + + +P ++FGR+ Q+A+QVI+QKVREA
Sbjct: 64 VVNEEELEFPDRQLSLEQAKERKPSAAVGDRIEEIIPSIEFGRIEAQTARQVIMQKVREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184
ER+ +F+ K+G++I GTVK+V N+I+DLG ++ + R E + E RP DRV++
Sbjct: 124 ERELIIDQFRSKLGQLIYGTVKKVTRDNIIIDLGGKAEAFLPRSEMLPHEMFRPNDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
Y+Y++ + RGPQ+ +SRT + +++LF +EVPEI I+ +KA +RDPG+RAK+AV ++
Sbjct: 184 YLYEITPQARGPQLFVSRTRNEMLIELFRIEVPEIGENIIDIKAAARDPGNRAKIAVKTN 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+GACVGMRG+RVQAV +EL E++DI++W + A VINA+ PA +T +V+DED
Sbjct: 244 DGRIDPIGACVGMRGARVQAVSSELGGERVDIILWDDNPAQLVINAMAPADITSIVVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V KEQLS AIGR GQNVRLASQLTGWT++++T EE Q++ ++ F
Sbjct: 304 THTMDLAVVKEQLSQAIGRNGQNVRLASQLTGWTLNVMTTEEFESKNQEESSKIVNLFTS 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
A+ +DE IA LLVA GF+ +EE+A V E+ +IE FDEE E++ RA + L + ++
Sbjct: 364 ALEIDEEIATLLVAHGFSSLEEVAYVPKEELLAIEEFDEEIVEELRNRANDKLLEMALSS 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
K + + L ++ G+ + L GI TMEDLA SVD+L+
Sbjct: 424 GKGLSG-TPDDSLINMEGMTEDLANKLASKGITTMEDLAEQSVDELMEIE---------- 472
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512
G +++ ++I+ AR W
Sbjct: 473 -------GISEEKAGALIMKAREP--WF 491
>gi|307245494|ref|ZP_07527581.1| Transcription termination factor NusA [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|307254448|ref|ZP_07536285.1| Transcription termination factor NusA [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|307258907|ref|ZP_07540638.1| Transcription termination factor NusA [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306853553|gb|EFM85771.1| Transcription termination factor NusA [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|306862589|gb|EFM94546.1| Transcription termination factor NusA [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|306866931|gb|EFM98788.1| Transcription termination factor NusA [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
Length = 493
Score = 458 bits (1178), Expect = e-126, Method: Composition-based stats.
Identities = 200/508 (39%), Positives = 316/508 (62%), Gaps = 20/508 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L A+AV+ EK + ++ + + ++ + + D+RV I+ +TGD FR
Sbjct: 4 EILLAAEAVSNEKLLPKEAIFEALETALAISTKKKKEMDIDVRVVIDRKTGDFQTFRRWI 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVE+V N T +ISL A+ +PS+ +G +V D + + F R+ +Q+A+QVI K+REAER
Sbjct: 64 VVEQVHNMTREISLDAAQYENPSVQLGDIVEDEVDSIPFDRITMQTARQVISTKIREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186
++ +F+ ++ II+ TVK+V +I+DLGN ++ VI R++ + REN RPGDRV+ +
Sbjct: 124 NKVIEQFRSQLNTIITATVKKVNREQIILDLGNQAEAVIVREDMLPRENFRPGDRVRGVL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
Y ++ E +GPQ+ ++R P + +LF +EVPEI ++++K SRDPGSRAK+AV S D
Sbjct: 184 YAIKPESKGPQLFVTRAKPVMLEELFKLEVPEIGEDVIEIKGASRDPGSRAKIAVKSHDK 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+DED
Sbjct: 244 RIDPVGACVGMRGARVQAISNELGGERVDIVLWDDNPAQFVINAMAPAEVSAIVVDEDKH 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V + L+ AIGR GQNVRLA+QLTGWT++++T E+ Q + N+ F+ A+
Sbjct: 304 AMDIAVEGKNLAQAIGRNGQNVRLATQLTGWTLNVMTTEDLDKKHQAEDNKVISLFVSAL 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDITLQ 425
+D+ A LLV EGF+ +EE+A + +SE+ +I+G DE A E+Q RA+ + + +
Sbjct: 364 EIDDEFAQLLVDEGFSSLEEIAFIPVSELTAIDGIEDENLAEELQTRAKNAITAKALAEE 423
Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485
+ +++ + + L ++ G+D I L E GI T+E LA + DDL E
Sbjct: 424 EALKQAHIEDRLLNLEGLDRHIAFKLAEKGITTLEGLAEQATDDLSDIEE---------- 473
Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIE 513
D+ +I+ AR ++ W
Sbjct: 474 -------LSADKASELIMAAR-QICWFS 493
>gi|307261095|ref|ZP_07542774.1| Transcription termination factor NusA [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|306869227|gb|EFN01025.1| Transcription termination factor NusA [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
Length = 493
Score = 458 bits (1178), Expect = e-126, Method: Composition-based stats.
Identities = 200/508 (39%), Positives = 317/508 (62%), Gaps = 20/508 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L A+AV+ EK + ++ + + ++ + + D+RV I+ +TGD FR
Sbjct: 4 EILLAAEAVSNEKLLPKEAIFEALETALAISTKKKKEMDIDVRVVIDRKTGDFQTFRRWI 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVE+V N T +ISL A+ +PS+ +G +V D + + F R+ +Q+A+QVI K+REAER
Sbjct: 64 VVEQVHNMTREISLDAAQYENPSVQLGDIVEDEVDSIPFDRITMQTARQVISTKIREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186
++ +F+ ++ II+ TVK+V +I+DLGN ++ VI R++ + REN RPGDRV+ +
Sbjct: 124 NKVIEQFRSQLNTIITATVKKVNREQIILDLGNQAEAVIVREDMLPRENFRPGDRVRGVL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
Y ++ E +GPQ+ ++R P + +LF +EVPEI ++++K SRDPGSRAK+AV S D
Sbjct: 184 YAIKPESKGPQLFVTRAKPVMLEELFKLEVPEIGEDVIEIKGASRDPGSRAKIAVKSHDK 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+DED
Sbjct: 244 RIDPVGACVGMRGARVQAISNELGGERVDIVLWDDNPAQFVINAMAPAEVSAIVVDEDKH 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V + L+ AIGR GQNVRLA+QLTGWT++++T E+ Q + N+ F+ A+
Sbjct: 304 AMDIAVEGKNLAQAIGRNGQNVRLATQLTGWTLNVMTTEDLDKKHQAEDNKVISLFVSAL 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDITLQ 425
+D+ A LLV EGF+ +EE+A + +SE+ +I+G DE A E+Q RA+ + + +
Sbjct: 364 EIDDEFAQLLVDEGFSSLEEIAFIPVSELTAIDGIEDENLAEELQTRAKNAITAKALAEE 423
Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485
+ +++ + + L ++ G+D I L E GI T+E+LA + DDL E
Sbjct: 424 EALKQAHIEDRLLNLEGLDRHIAFKLAEKGITTLEELAEQATDDLSDIEE---------- 473
Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIE 513
D+ +I+ AR ++ W
Sbjct: 474 -------LSADKASELIMAAR-QICWFS 493
>gi|301156201|emb|CBW15672.1| transcription termination/antitermination L factor [Haemophilus
parainfluenzae T3T1]
Length = 495
Score = 458 bits (1178), Expect = e-126, Method: Composition-based stats.
Identities = 199/510 (39%), Positives = 320/510 (62%), Gaps = 20/510 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L A+AV+ EK + R+ + + +I + + Y +DIRV INP+TG+ FR
Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIALSTKKKYDYETDIRVSINPKTGEFDTFRRWL 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV+ T +++L+ A+ DP++ +G V D + + F R+A+Q+A+QVI K+REAER
Sbjct: 64 VVDEVKVPTKEMTLEAAQFEDPNVQLGDYVEDQIESIAFDRIAMQTARQVISTKIREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186
+ +F+ + G+I++GTVK+V ++I+DLG ++ VI R++ + REN RPGDRV+ +
Sbjct: 124 AKVVEQFRSEEGKIVTGTVKKVNRESIILDLGNKAEAVIMREDMLPRENFRPGDRVRGVL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
Y V E + Q+ ++R P+ +++LF +EVPEI +++++ +RDPGSRAK+AV S+D
Sbjct: 184 YKVNPESKTAQLFVTRAKPEMLIELFRIEVPEIGEEMLEIRGAARDPGSRAKIAVKSNDK 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRG+RVQA+ EL E++DIV+W + A +VINA+ PA VT +++DED
Sbjct: 244 RIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQYVINAMAPADVTSIIVDEDNH 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V + L+ AIGR GQNVRLA+QLTGWT++++T E+ + Q + + FM +
Sbjct: 304 SMDIAVNADNLAQAIGRNGQNVRLATQLTGWTLNVMTTEQLNEKHQAEDTKVLNLFMDKL 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDITLQ 425
+DE A +LV EGF +EE+A V +SE+ +I+G DE+ E+QGRA++ + +
Sbjct: 364 GLDEDFAQILVDEGFTSLEEVAYVPVSELTAIDGLEDEDLIEELQGRAKDAITAAAAAEE 423
Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485
+ +++ + + L ++ G++ I L E I T+E+LA VDDL E
Sbjct: 424 EALKKANIEDRLLNLEGMNRHIAFKLAEKQITTLEELAEQGVDDLADIEE---------- 473
Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
+Q I+ AR + W +E
Sbjct: 474 -------LTAEQAADFIMAAR-NICWFSEE 495
>gi|71281620|ref|YP_268927.1| transcription termination factor NusA [Colwellia psychrerythraea
34H]
gi|71147360|gb|AAZ27833.1| transcription termination factor NusA [Colwellia psychrerythraea
34H]
Length = 497
Score = 458 bits (1178), Expect = e-126, Method: Composition-based stats.
Identities = 192/512 (37%), Positives = 311/512 (60%), Gaps = 22/512 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DAV+ EK++ R+ + M +++ A + Y +RV I+ +G+ FR
Sbjct: 4 EILLVVDAVSNEKALPRESIFEAMETALETATKKKYEGDIIVRVSIDRISGEFDTFRRWL 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
++E+ +EN +I L A+ P +++G D + + F RV Q+AKQVI+QK+RE
Sbjct: 64 IIEDGEPMENPYAEIGLAAAQYDAPELNVGDYSEDQIESVKFDRVTTQTAKQVIVQKIRE 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVK 183
AER +++ +GEI++G VK+ +VIVDLGN+ + VI RD+ + RE RPGDRV+
Sbjct: 124 AERALVTEAYQEHLGEIVTGVVKKASRESVIVDLGNNAEAVIYRDDMLPRETFRPGDRVR 183
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+Y+++ E RG Q+ LSRT P+ +++LF +EVPEI ++++K +RDPGSRAK+AV S
Sbjct: 184 GLLYEIKPEARGAQLFLSRTKPEMLIELFRVEVPEIGEEMLEIKGAARDPGSRAKIAVKS 243
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
+D IDPVGACVGMRGSRVQAV EL E++DIV++ + A +VINA+ PA V +++DE
Sbjct: 244 NDKRIDPVGACVGMRGSRVQAVSGELGGERVDIVLYDDNVAQYVINAMSPAEVASIIVDE 303
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
D G +++ V + L++AIGR GQN+RLASQLTGW ++++T + Q + ++ F+
Sbjct: 304 DKGTMDIAVEEANLAMAIGRSGQNIRLASQLTGWELNVMTVADMKEKHQAENDKVLNLFI 363
Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423
+++DE A LL EGF +EE+A V +E+ I+G DEE ++ RA+E L +
Sbjct: 364 DKLDLDEDFATLLAEEGFTSLEEIAYVPTAEMLDIDGLDEEIIEALRERAKEALTTQALA 423
Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483
++ + +++L + G++ + L G++T+EDLA +D++ E
Sbjct: 424 SEETLEGSEPAQDLLDLDGLERHLAFVLASRGVRTLEDLAEQGIDEISDIEE-------- 475
Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
+ + +I+ AR + W +E
Sbjct: 476 ---------LDETKAGELIMAAR-NICWFNEE 497
>gi|170719906|ref|YP_001747594.1| transcription elongation factor NusA [Pseudomonas putida W619]
gi|169757909|gb|ACA71225.1| NusA antitermination factor [Pseudomonas putida W619]
Length = 493
Score = 457 bits (1177), Expect = e-126, Method: Composition-based stats.
Identities = 206/509 (40%), Positives = 319/509 (62%), Gaps = 22/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + ++V+ EK + V+ + ++ A + + D+RVEIN TG FR
Sbjct: 4 EVLLVVESVSNEKGVPPGVIFEALEVALATATKKRFEDEVDLRVEINRHTGSYETFRRWT 63
Query: 68 VVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV+ ++++ + L + P +G V+ + + ++FGR+A Q+AKQVI+QKVREA
Sbjct: 64 VVDEADLDDPAIETWLAKIHETHPEAKVGDVIEEKIESIEFGRIAAQTAKQVIVQKVREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER + ++++VGEIISGTVK+V NVIVDLGN+ + ++ R++ I RE R G R+++
Sbjct: 124 ERAQVVDAYRERVGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIIPRETFRVGVRLRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ ++R E RGPQ++LSRT PQ +++LF +EVPEI G+++V A SRDPGSRAK+AV S
Sbjct: 184 LLKEIRTENRGPQLILSRTAPQMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED
Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDENPAQFVINAMSPAEVAAIIVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V ++ L+ AIGR GQNVRLASQLTGWT++++TE++ +Q + + + F++
Sbjct: 304 AHAMDIAVAEDNLAQAIGRGGQNVRLASQLTGWTLNVMTEKDIQAKQQAETGDILRNFIE 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+ VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I
Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAIAT 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +E+L S+ G+D + L G+ EDLA S
Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAAELAVRGVVNREDLAEQS-----------------I 466
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513
D L G +++ +I+ AR W E
Sbjct: 467 DDLLDIDGIDEERAGKLIMAARAH--WFE 493
>gi|120612038|ref|YP_971716.1| NusA antitermination factor [Acidovorax citrulli AAC00-1]
gi|120590502|gb|ABM33942.1| NusA antitermination factor [Acidovorax citrulli AAC00-1]
Length = 494
Score = 457 bits (1177), Expect = e-126, Method: Composition-based stats.
Identities = 199/514 (38%), Positives = 326/514 (63%), Gaps = 24/514 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
ELL + +A++ EK+++RDVV + ++ +A + LY DIRV I+ ++G+ FR
Sbjct: 2 NRELLMLVEAISREKNVERDVVFGAVELALAQATKKLYPGEVDIRVAIDRDSGNYETFRR 61
Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
VV + ++N + L A++R I++G + + + + GR+ +AKQVI+QK+
Sbjct: 62 WLVVPDDAGLQNPDAEELLMDAQERIADIEVGEYIEEGIESLPIGRIGAMAAKQVILQKI 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182
R+AER+ +F + +I +GTVKR++ G++IV+ G +G +RR E I +ENLR GDRV
Sbjct: 122 RDAEREMLLNDFMSRGEKIFTGTVKRMDKGDIIVESGRVEGRLRRSEMIPKENLRNGDRV 181
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
++ I +V RG ++LSR+ P+FM++LF EVPEI G++++K+ +RDPGSRAK+AV
Sbjct: 182 RAMIMEVDLTLRGAPIILSRSAPEFMIELFRNEVPEIEQGLLEIKSCARDPGSRAKIAVL 241
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA V+ +V+D
Sbjct: 242 SHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVVD 301
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
E+ ++V+V +E L++AIGR GQNVRLAS LTGW I+I+ E + + + + + F
Sbjct: 302 EEKHAMDVVVDEENLAIAIGRGGQNVRLASDLTGWKINIMDAAESAQKQANETDASRRLF 361
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
M+ ++VDE IA++L+ EGF+ +EE+A V + E+ IE FDE+T E++ RA++ L ++I
Sbjct: 362 MEKLDVDEEIANILIEEGFSSLEEVAYVPLQEMLEIESFDEDTVNELRARAKDALLTMEI 421
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482
++ + GVS+ L + G+ S++ L E G+ T +DLA ++D+L +
Sbjct: 422 AREESVE--GVSQNLRDLDGMTSELIGKLAEGGVHTRDDLADLAIDELTALTGQ------ 473
Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
+++ +++I+ AR W ++
Sbjct: 474 -----------SEEEAKALIMKAREH--WFAGQE 494
>gi|90412484|ref|ZP_01220487.1| transcription elongation factor NusA [Photobacterium profundum
3TCK]
gi|90326521|gb|EAS42927.1| transcription elongation factor NusA [Photobacterium profundum
3TCK]
Length = 495
Score = 457 bits (1177), Expect = e-126, Method: Composition-based stats.
Identities = 196/511 (38%), Positives = 315/511 (61%), Gaps = 19/511 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + + D+RV I+ +TG FR
Sbjct: 2 NKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKHEAEIDVRVAIDRKTGQFETFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
V+EV T +++++ A+ D +I++GG V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WIAVDEVTQPTLEMTIEAAQYDDETIELGGFVEDEIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER++ +F D GE+I+G VK+V V++DLGN+ + VI+RD+ + REN R GDR++
Sbjct: 122 EREQIVEQFMDNEGELITGIVKKVNRDAVVIDLGNNAEAVIQRDDQLPRENFRSGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y VR E RG Q+ ++R+ + +++LF +EVPEI ++++ +RDPGSRAK+AV ++
Sbjct: 182 LLYAVRPEARGFQLFMTRSKAEMLLELFRIEVPEIGEELIELMGAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDIV+W ++A +VINA+ PA V +++DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELAGERIDIVLWDENAAQYVINAMAPAEVASIIVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V K+ L+ AIGR GQN+RLASQLTGW ++++T E+ Q++ F +
Sbjct: 302 NHTMDIAVEKDNLAQAIGRSGQNIRLASQLTGWELNVMTVEDLQKKHQEEAQVSIDTFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A LLV EGF +EE+A V +SE+ +EG DE+ E++ RA+ L + +
Sbjct: 362 HLDIDEDFATLLVQEGFTTLEEIAYVPVSELMDVEGLDEDAINELRDRAKAALTTLALAQ 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + + +L + G++ ++ L GI T+EDLA DDLL E
Sbjct: 422 EESFEGVEPAADLLGLDGLERELAFKLAAKGICTLEDLADQGTDDLLDLEE--------- 472
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
+ + +I+ AR + W E
Sbjct: 473 --------MDEAKAGELIMAAR-NICWFSDE 494
>gi|301170017|emb|CBW29621.1| transcription termination/antitermination L factor [Haemophilus
influenzae 10810]
Length = 495
Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats.
Identities = 193/510 (37%), Positives = 322/510 (63%), Gaps = 20/510 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L A+AV+ EK + R+ + + +I + + + +DIRV INP+TG+ FR
Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIAISTKKKFEYETDIRVSINPKTGEFDTFRRWL 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV+ T +I+L+ A+ DP++ +G V D + + F R+A+Q+A+QVI K+REAER
Sbjct: 64 VVDEVKVPTKEITLEAAQFDDPNLQLGEYVEDQIESIAFDRIAMQTARQVISTKIREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186
+ +F+++ G+I++GTVK+V ++I+DLG ++ +I R++ + REN RPGDRV+ +
Sbjct: 124 AKVVEQFREEEGKIVTGTVKKVSRDSIILDLGNKAEAMIAREDMLPRENFRPGDRVRGVL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
Y V E + Q+ ++R+ P+ +++LF +EVPEI +++++ +RD GSRAK+AV S+D
Sbjct: 184 YKVNPEGKTAQLFVTRSKPEMLIELFRIEVPEIGEEMIEIRGAARDAGSRAKIAVKSNDK 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRG+RVQ + EL E++DIV+W + A FVINA+ PA V+ +++DED
Sbjct: 244 RIDPVGACVGMRGARVQVITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIIVDEDNH 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V + L+ AIGR GQNVRLA+QLTGWT++++T +E + Q + + F+ A+
Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLATQLTGWTLNVMTTDELNAKHQAEDKKVLNLFINAL 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDITLQ 425
+DE A +LV EGF +EE+A V ++E+ +I+G DE+ E+Q RA+ + + +
Sbjct: 364 ELDEEFAQILVEEGFTSLEEIAYVPMNELTAIDGLEDEDLVEELQTRAKNAITAAAVAEE 423
Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485
+ +++ + + L ++ G++ + + L E I T+E+LA VDDL E
Sbjct: 424 EALKKANIEDRLLNLEGMNRHVAIKLAEKQITTLEELAEQGVDDLTDIEE---------- 473
Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
+Q +I+ AR + W +E
Sbjct: 474 -------LTAEQAADLIMAAR-NICWFGEE 495
>gi|326316665|ref|YP_004234337.1| NusA antitermination factor [Acidovorax avenae subsp. avenae ATCC
19860]
gi|323373501|gb|ADX45770.1| NusA antitermination factor [Acidovorax avenae subsp. avenae ATCC
19860]
Length = 494
Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats.
Identities = 200/514 (38%), Positives = 326/514 (63%), Gaps = 24/514 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
ELL + +A++ EK+++RDVV + ++ +A + LY DIRV I+ ++G+ FR
Sbjct: 2 NRELLMLVEAISREKNVERDVVFGAVELALAQATKKLYPGEVDIRVAIDRDSGNYETFRR 61
Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
VV + ++N + L A++R I++G + + + + GR+ +AKQVI+QK+
Sbjct: 62 WLVVPDDAGLQNPDAEELLMDAQERIADIEVGEYIEEGIESVPIGRIGAMAAKQVILQKI 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182
R+AER+ +F + +I +GTVKR++ G++IV+ G +G +RR E I +ENLR GDRV
Sbjct: 122 RDAEREMLLNDFMSRGEKIFTGTVKRMDKGDIIVESGRVEGRLRRSEMIPKENLRNGDRV 181
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
++ I +V RG ++LSR+ P+FM++LF EVPEI G++++K+ +RDPGSRAK+AV
Sbjct: 182 RAMIMEVDLTLRGAPIILSRSAPEFMIELFRNEVPEIEQGLLEIKSCARDPGSRAKIAVL 241
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA V+ +V+D
Sbjct: 242 SHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVVD 301
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
E+ ++V+V +E L++AIGR GQNVRLAS LTGW I+I+ E + + + + + F
Sbjct: 302 EEKHAMDVVVDEENLAIAIGRGGQNVRLASDLTGWKINIMDAAESAQKQANETDASRRLF 361
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
M+ ++VDE IA++L+ EGFA +EE+A V + E+ IE FDE+T E++ RA++ L ++I
Sbjct: 362 MEKLDVDEEIANILIEEGFASLEEVAYVPLQEMLEIESFDEDTVNELRARAKDALLTMEI 421
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482
++ + GVS+ L + G+ S++ L E G+ T +DLA ++D+L +
Sbjct: 422 AREESVE--GVSQNLRDLDGMTSELIGKLAEGGVHTRDDLADLAIDELTALTGQ------ 473
Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
+++ +++I+ AR W ++
Sbjct: 474 -----------SEEEAKALIMKAREH--WFAGQE 494
>gi|329123362|ref|ZP_08251927.1| N utilization substance A [Haemophilus aegyptius ATCC 11116]
gi|327471362|gb|EGF16814.1| N utilization substance A [Haemophilus aegyptius ATCC 11116]
Length = 507
Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats.
Identities = 194/510 (38%), Positives = 322/510 (63%), Gaps = 20/510 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L A+AV+ EK + R+ + + +I + + + +DIRV INP+TG+ FR
Sbjct: 16 EILLAAEAVSNEKLLPREKIFEALESAIAISTKKKFEYETDIRVSINPKTGEFDTFRRWL 75
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV+ T +I+L+ A+ DP++ +G V D + + F R+A+Q+A+QVI K+REAER
Sbjct: 76 VVDEVKVPTKEITLEAAQFDDPNLQLGEYVEDQIESIAFDRIAMQTARQVISTKIREAER 135
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186
+ +F+++ G+I++GTVK+V ++I+DLG ++ +I R++ + REN R GDRV+ +
Sbjct: 136 AKVVEQFREEEGKIVTGTVKKVSRDSIILDLGNKAEAMIAREDMLPRENFRLGDRVRGVL 195
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
Y V E + Q+ ++R+ P+ +++LF +EVPEI +++++ +RD GSRAK+AV S+D
Sbjct: 196 YKVNPEGKTAQLFVTRSKPEMLIELFRIEVPEIGEEMIEIRGAARDAGSRAKIAVKSNDK 255
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRG+RVQ + EL E++DIV+W + A FVINA+ PA V+ +++DED
Sbjct: 256 RIDPVGACVGMRGARVQVITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIIVDEDNH 315
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V + L+ AIGR GQNVRLA+QLTGWT++++T +E + Q + N+ F+ A+
Sbjct: 316 SMDIAVEADNLAQAIGRNGQNVRLATQLTGWTLNVMTTDELNAKHQAEDNKVLNLFINAL 375
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDITLQ 425
+DE A +LV EGF +EE+A V ++E+ +I+G DE+ E+Q RA+ + + +
Sbjct: 376 KLDEEFAQILVEEGFTSLEEIAYVPMNELTAIDGLEDEDLVEELQTRAKNAITAAAVAEE 435
Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485
+ +++ V + L ++ G++ + + L E I T+E+LA VDDL E
Sbjct: 436 EALKKANVEDRLLNLEGMNRHVAIKLAEKQITTLEELAEQGVDDLTDIEE---------- 485
Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
+Q +I+ AR + W +E
Sbjct: 486 -------LTAEQAADLIMAAR-NICWFGEE 507
>gi|253997782|ref|YP_003049845.1| transcription elongation factor NusA [Methylovorus sp. SIP3-4]
gi|253984461|gb|ACT49318.1| NusA antitermination factor [Methylovorus sp. SIP3-4]
Length = 488
Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats.
Identities = 210/508 (41%), Positives = 331/508 (65%), Gaps = 25/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A+EK++ ++V+ + + ++ A + + +D+RVEI ++G+ FR +
Sbjct: 4 EILLLVDALAHEKNVAKEVIFTALELALASATKKRFTEDADVRVEIERDSGNYHSFRRWQ 63
Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV +++EN Q+ +R + +G +PL ++FGR+ Q+AKQVI+QKVREA
Sbjct: 64 VVSDDDLENPAAQMYTDD--ERAEGLSLGDYYEEPLESVEFGRIGAQAAKQVILQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER++ +F + +++G +KR+E GN I+++G + V+ RD+ I +ENLR GDRV++Y
Sbjct: 122 EREQILNDFLARKEHLVTGVIKRMEKGNAIIEVGRIESVLPRDQMIPKENLRVGDRVRAY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ + R RGPQ++LSR P+F++KLF +EVPEI G++++K+ SRDPG R+K+AV S+D
Sbjct: 182 LSRIERTGRGPQLVLSRIAPEFLIKLFELEVPEIEEGLLEIKSASRDPGLRSKIAVKSND 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DPVG CVGMRGSRVQAV EL E++DIV+WS + A FVINA+ PA V+ +V+DED
Sbjct: 242 QRLDPVGTCVGMRGSRVQAVTGELAGERVDIVLWSMEPAQFVINAMAPAEVSSIVVDEDA 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
++V+V +EQL+ AIGR GQNVRLAS+LTGWT++I+TE E + ++++ + Q F+
Sbjct: 302 HSMDVVVDEEQLAQAIGRNGQNVRLASELTGWTLNILTEAEAAQKHEEEYTKTRQLFIDK 361
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425
++VDE +A +LV EGF +EE+A V I+E++ I+ FDEET E++ RAR L I +
Sbjct: 362 LDVDEEVADILVQEGFNTLEEIAYVPIAEMSEIDAFDEETINELRKRARAALLTEAIAKE 421
Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485
+K+ E SE L ++ G+D L G+ TMEDLA +VD+L+ +
Sbjct: 422 EKLEEA--SESLLTMDGMDDATAHLLASKGVSTMEDLADLAVDELMEMA----------- 468
Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIE 513
++ + +I+ AR W
Sbjct: 469 ------NMDAERAKQLIMTARAP--WFA 488
>gi|297537315|ref|YP_003673084.1| transcription termination factor NusA [Methylotenera sp. 301]
gi|297256662|gb|ADI28507.1| transcription termination factor NusA [Methylotenera sp. 301]
Length = 488
Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats.
Identities = 207/507 (40%), Positives = 332/507 (65%), Gaps = 25/507 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A+EK++ ++V+ + + ++ A + + +D+RV I+ E+G+ FR +
Sbjct: 4 EILLLVDALAHEKNVSKEVIFTALELALASATKKKHHDDADVRVSIDRESGEYETFRRWQ 63
Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VE +EN QI + +++G +PL ++FGR+ Q+AKQVI+QKVREA
Sbjct: 64 YVEYDLLENSAYQI--DEESEHAKGLNVGDYYEEPLESIEFGRIGAQAAKQVILQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER++ +F + ++++G +KR+E GN I+++G + ++ R++ I +ENLR GDRV+++
Sbjct: 122 EREQILEDFLARDEKLVTGVIKRMEKGNAIIEVGRIESLLPREQMIPKENLRVGDRVRAF 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ + R RGPQ++LSR P F+V+LF +EVPEI G+++++A +RDPG R+K+AV S+D
Sbjct: 182 LSRIERGGRGPQLILSRITPDFLVRLFELEVPEIEEGLLEIRAAARDPGLRSKIAVKSND 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
IDPVG CVGMRGSRVQAV EL E++DIV+WS + A FVINA+ PA V+ +V+DED
Sbjct: 242 QRIDPVGTCVGMRGSRVQAVTGELAGERVDIVLWSMEPAQFVINAMSPAEVSSIVVDEDA 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
++V+V +EQL+LAIGR GQNVRLAS+LTGWT++I+T ++ + Q +F +Q FM
Sbjct: 302 HSMDVVVDEEQLALAIGRNGQNVRLASELTGWTLNILTVDQAAQKNQDEFAGVSQLFMDK 361
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425
++VD +A +LV EGF+ +EE+A V ++E+ IE FDE+T E++ RAR L I +
Sbjct: 362 LDVDAEVAEILVQEGFSTLEEIAYVPLAEMNEIEAFDEDTIEELRKRARAALLTEAIAKE 421
Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485
+K+ E SE+L ++ G+D++ L G+ TM+DLA +VD+L +
Sbjct: 422 EKVEEA--SEDLLAMEGMDAETAHLLASKGVATMDDLAELAVDELEELT----------- 468
Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWI 512
G ++ +++I+ AR W
Sbjct: 469 ------GMDAERAKTLIMTARAP--WF 487
>gi|325578298|ref|ZP_08148433.1| N utilization substance A [Haemophilus parainfluenzae ATCC 33392]
gi|325160034|gb|EGC72163.1| N utilization substance A [Haemophilus parainfluenzae ATCC 33392]
Length = 495
Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats.
Identities = 200/510 (39%), Positives = 321/510 (62%), Gaps = 20/510 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L A+AV+ EK + R+ + + +I + + Y +DIRV INP+TG+ FR
Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIALSTKKKYDYETDIRVSINPKTGEFDTFRRWL 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV+ T +++L+ A+ DP+I +G V D + + F R+A+Q+A+QVI K+REAER
Sbjct: 64 VVDEVKVPTKEMTLEAAQFEDPNIQLGDYVEDQIESIAFDRIAMQTARQVISTKIREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186
+ +F+ + G+I++GTVK+V ++I+DLG ++ VI R++ + REN RPGDRV+ +
Sbjct: 124 AKVVEQFRSEEGKIVTGTVKKVNRESIILDLGNKAEAVIMREDMLPRENFRPGDRVRGVL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
Y V E + Q+ ++R P+ +++LF +EVPEI +++++ +RDPGSRAK+AV S+D
Sbjct: 184 YKVNPESKTAQLFVTRAKPEMLIELFRIEVPEIGEEMLEIRGAARDPGSRAKIAVKSNDK 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRG+RVQA+ EL E++DIV+W + A +VINA+ PA VT +++DED
Sbjct: 244 RIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQYVINAMAPADVTSIIVDEDNH 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V + L+ AIGR GQNVRLA+QLTGWT++++T E+ + Q + + FM +
Sbjct: 304 SMDIAVNADNLAQAIGRNGQNVRLATQLTGWTLNVMTTEQLNEKHQAEDTKVLNLFMDKL 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDITLQ 425
+DE A +LV EGF +EE+A V +SE+++I+G DE+ E+QGRA++ + +
Sbjct: 364 GLDEEFAQILVDEGFTSLEEVAYVPVSELSAIDGLEDEDLIEELQGRAKDAITAAAAAEE 423
Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485
+ +++ + + L ++ G++ I L E I T+E+LA VDDL E
Sbjct: 424 EALKKANIEDRLLNLEGMNRHIAFKLAEKQITTLEELAEQGVDDLADIEE---------- 473
Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
+Q I+ AR + W +E
Sbjct: 474 -------LTAEQAADFIMAAR-NICWFSEE 495
>gi|319776227|ref|YP_004138715.1| Transcription elongation protein NusA [Haemophilus influenzae
F3047]
gi|317450818|emb|CBY87040.1| Transcription elongation protein NusA [Haemophilus influenzae
F3047]
Length = 495
Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats.
Identities = 194/510 (38%), Positives = 322/510 (63%), Gaps = 20/510 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L A+AV+ EK + R+ + + +I + + + +DIRV INP+TG+ FR
Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIAISTKKKFEYETDIRVSINPKTGEFDTFRRWL 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV+ T +I+L+ A+ DP++ +G V D + + F R+A+Q+A+QVI K+REAER
Sbjct: 64 VVDEVKVPTKEITLEAAQFDDPNLQLGEYVEDQIESIAFDRIAMQTARQVISTKIREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186
+ +F+++ G+I++GTVK+V ++I+DLG ++ +I R++ + REN R GDRV+ +
Sbjct: 124 AKVVEQFREEEGKIVTGTVKKVSRDSIILDLGNKAEAMIAREDMLPRENFRLGDRVRGVL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
Y V E + Q+ ++R+ P+ +++LF +EVPEI +++++ +RD GSRAK+AV S+D
Sbjct: 184 YKVNPEGKTAQLFVTRSKPEMLIELFRIEVPEIGEEMIEIRGAARDAGSRAKIAVKSNDK 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRG+RVQ + EL E++DIV+W + A FVINA+ PA V+ +++DED
Sbjct: 244 RIDPVGACVGMRGARVQVITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIIVDEDNH 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V + L+ AIGR GQNVRLA+QLTGWT++++T +E + Q + N+ F+ A+
Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLATQLTGWTLNVMTTDELNAKHQAEDNKVLNLFINAL 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDITLQ 425
+DE A +LV EGF +EE+A V ++E+ +I+G DE+ E+Q RA+ + + +
Sbjct: 364 KLDEEFAQILVEEGFTSLEEIAYVPMNELTAIDGLEDEDLVEELQTRAKNAITAAAVAEE 423
Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485
+ +++ V + L ++ G++ + + L E I T+E+LA VDDL E
Sbjct: 424 EALKKANVEDRLLNLEGMNRHVAIKLAEKQITTLEELAEQGVDDLTDIEE---------- 473
Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
+Q +I+ AR + W +E
Sbjct: 474 -------LTAEQAADLIMAAR-NICWFGEE 495
>gi|254496140|ref|ZP_05109038.1| transcription elongation factor NusA [Legionella drancourtii
LLAP12]
gi|254354627|gb|EET13264.1| transcription elongation factor NusA [Legionella drancourtii
LLAP12]
Length = 502
Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats.
Identities = 205/518 (39%), Positives = 332/518 (64%), Gaps = 33/518 (6%)
Query: 8 ELLQIADAVAY---------EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETG 58
ELL +A+A++ E+ + ++V++ + +++ A R ++G +R++++P TG
Sbjct: 4 ELLLVAEALSKISKPLSVPTERGVSKEVIILAIQAALESATRKIFGLEIGVRIKLDPRTG 63
Query: 59 DISLFRLLEVV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAK 115
+ FR +VV ++VE Q++L A++R+P+I +G + + +P ++FGR+ Q+A+
Sbjct: 64 EYETFRFWDVVADEDDVEFPEHQLTLAQAKERNPAITVGERIEESIPSIEFGRIEAQAAR 123
Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRE 174
QVI+QKVREAERD +F+ K+G++I G+VK+V N+I+DLG ++ + R E + E
Sbjct: 124 QVIMQKVREAERDLVIEQFRSKLGQLIYGSVKKVTRDNIIIDLGGKAEAFLPRTEMLPHE 183
Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234
RP DRV++Y+Y++ + RGPQ+ +SRT + +++LF +EVPEI ++ VKA +R+PG
Sbjct: 184 MFRPNDRVRAYLYEIIPQARGPQLFVSRTRNEMLIELFRIEVPEIGENVIDVKAAAREPG 243
Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294
+RAK+AV ++D IDPVGACVGMRG+RVQAV +EL E++DI++W + A VINA+ PA
Sbjct: 244 NRAKIAVKTNDGRIDPVGACVGMRGARVQAVSSELGGERVDIILWDDNPAQLVINAMAPA 303
Query: 295 IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354
+T +V+DED +++ V K+QLS AIGR GQNVRLASQLTGWT++++T +E Q++
Sbjct: 304 DITSIVVDEDTHTMDLAVEKDQLSQAIGRNGQNVRLASQLTGWTLNVMTTDEFENKNQEE 363
Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414
++ + F A+ +DE IA LLVA GF+ +EE+A V E+ +IE FD+E E++ RA
Sbjct: 364 SSKIVKLFTSALEIDEEIATLLVAHGFSSLEEVAYVPKEELLAIEEFDDEIVEELRNRAN 423
Query: 415 EYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWS 474
+ L + +T K + E L ++ G+ ++ L E GI +MEDLA SVD+LL
Sbjct: 424 DNLLTMALTSGKGLAGA-PDESLLAMDGMTEELANKLAEKGITSMEDLAEQSVDELLEID 482
Query: 475 ENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512
G +++ ++I+ AR W
Sbjct: 483 -----------------GMSEEKAGALIMKAREP--WF 501
>gi|319896984|ref|YP_004135179.1| transcription elongation protein nusa [Haemophilus influenzae
F3031]
gi|317432488|emb|CBY80845.1| Transcription elongation protein NusA [Haemophilus influenzae
F3031]
Length = 495
Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats.
Identities = 194/510 (38%), Positives = 322/510 (63%), Gaps = 20/510 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L A+AV+ EK + R+ + + +I + + + +DIRV INP+TG+ FR
Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIAISTKKKFEYETDIRVSINPKTGEFDTFRRWL 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV+ T +I+L+ A+ DP++ +G V D + + F R+A+Q+A+QVI K+REAER
Sbjct: 64 VVDEVKVPTKEITLEAAQFDDPNLQLGEYVEDQIESIAFDRIAMQTARQVISTKIREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186
+ +F+++ G+I++GTVK+V ++I+DLG ++ +I R++ + REN R GDRV+ +
Sbjct: 124 AKVVEQFREEEGKIVTGTVKKVSRDSIILDLGNKAEAMIAREDMLPRENFRLGDRVRGVL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
Y V E + Q+ ++R+ P+ +++LF +EVPEI +++++ +RD GSRAK+AV S+D
Sbjct: 184 YKVNPEGKTAQLFVTRSKPEMLIELFRIEVPEIGEEMIEIRGAARDAGSRAKIAVKSNDK 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRG+RVQ + EL E++DIV+W + A FVINA+ PA V+ +++DED
Sbjct: 244 RIDPVGACVGMRGARVQVITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIIVDEDNH 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V + L+ AIGR GQNVRLA+QLTGWT++++T +E + Q + N+ F+ A+
Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLATQLTGWTLNVMTTDELNAKHQAEDNKVLNLFINAL 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDITLQ 425
+DE A +LV EGF +EE+A V ++E+ +I+G DE+ E+Q RA+ + + +
Sbjct: 364 ELDEEFAQILVEEGFTSLEEIAYVPMNELTAIDGLEDEDLVEELQTRAKNAITAAAVAEE 423
Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485
+ +++ V + L ++ G++ + + L E I T+E+LA VDDL E
Sbjct: 424 EALKKANVEDRLLNLEGMNRHVAIKLAEKQITTLEELAEQGVDDLTDIEE---------- 473
Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
+Q +I+ AR + W +E
Sbjct: 474 -------LTAEQAADLIMAAR-NICWFGEE 495
>gi|332528133|ref|ZP_08404164.1| NusA antitermination factor [Rubrivivax benzoatilyticus JA2]
gi|332112704|gb|EGJ12497.1| NusA antitermination factor [Rubrivivax benzoatilyticus JA2]
Length = 492
Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats.
Identities = 207/511 (40%), Positives = 326/511 (63%), Gaps = 24/511 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + DA++ EK++DRDVV + ++ A + L+G DIRV ++ ETG+ FR
Sbjct: 2 NREMLMLVDAISREKTVDRDVVFGAVEAALASATKKLHGGEVDIRVAVDRETGEYETFRR 61
Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
VV ++N ++ L A+++ I++ + + + + GR+ Q+AKQVI+QK+
Sbjct: 62 WHVVPNEAGLQNADAEVLLFEAQEQIADIEVDDYIEESVDSVPIGRIGAQAAKQVILQKI 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182
R+AER++ +F + +I GTVKR++ G++IV+ G +G ++R E I +ENLR GDRV
Sbjct: 122 RDAEREQLLNDFLARGDKIFVGTVKRLDKGDIIVESGRVEGRLKRSEMIPKENLRSGDRV 181
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
+++I V QRGPQ++LSR+ P FMV+LF EVPEI G++++K+ +RDPGSRAK+AV
Sbjct: 182 RAFILGVDPTQRGPQIMLSRSAPGFMVELFGQEVPEIELGLLEIKSCARDPGSRAKIAVV 241
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
S D +DP+G CVG+RGSRV V TEL E++DIV+WS D A FVI AL PA V +V+D
Sbjct: 242 SHDRRVDPIGTCVGVRGSRVNGVTTELAGERVDIVLWSEDPAQFVIGALAPANVQSIVVD 301
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
E+ ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T EE + + + F
Sbjct: 302 EERHAMDVVVDEENLAIAIGRGGQNVRLASELTGWRINIMTAEESQAKQATETESVRKIF 361
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
++ ++VDE +A +L+AEGF +EE+A V + E+ IE FDE+T E++ RA++ L ++I
Sbjct: 362 VEKLDVDEEVADILIAEGFTSLEEVAYVPLQEMLEIEAFDEDTVQELRTRAKDALLTMEI 421
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482
++K+ E VS++L + G+ ++ L + G+ T +DLA +VD+L+ +
Sbjct: 422 EREEKVEE--VSQDLRDLEGLTPELIGKLSDGGVNTRDDLADLAVDELVEMT-------- 471
Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
G + Q ++I+ AR W
Sbjct: 472 ---------GVDETQARALIMKAREH--WFT 491
>gi|313199846|ref|YP_004038504.1| nusa antitermination factor [Methylovorus sp. MP688]
gi|312439162|gb|ADQ83268.1| NusA antitermination factor [Methylovorus sp. MP688]
Length = 488
Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats.
Identities = 209/508 (41%), Positives = 332/508 (65%), Gaps = 25/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A+EK++ ++V+ + + ++ A + + +D+RVEI ++G+ FR +
Sbjct: 4 EILLLVDALAHEKNVAKEVIFTALELALASATKKRFTEDADVRVEIERDSGNYHSFRRWQ 63
Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+V +++EN Q+ +R +++G +PL ++FGR+ Q+AKQVI+QKVREA
Sbjct: 64 IVSDDDLENPAAQMYTDD--ERAEGLNLGDYYEEPLESVEFGRIGAQAAKQVILQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER++ +F + +++G +KR+E GN I+++G + V+ RD+ I +ENLR GDRV++Y
Sbjct: 122 EREQILNDFLARKEHLVTGVIKRMEKGNAIIEVGRIESVLPRDQMIPKENLRVGDRVRAY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ + R RGPQ++LSR P+F++KLF +EVPEI G++++K+ SRDPG R+K+AV S+D
Sbjct: 182 LSRIERTGRGPQLVLSRIAPEFLIKLFELEVPEIEEGLLEIKSASRDPGLRSKIAVKSND 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DPVG CVGMRGSRVQAV EL E++DIV+WS + A FVINA+ PA V+ +V+DED
Sbjct: 242 QRLDPVGTCVGMRGSRVQAVTGELAGERVDIVLWSMEPAQFVINAMAPAEVSSIVVDEDA 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
++V+V +EQL+ AIGR GQNVRLAS+LTGWT++I+TE E + ++++ + Q F+
Sbjct: 302 HSMDVVVDEEQLAQAIGRNGQNVRLASELTGWTLNILTEAEAAQKHEEEYTKTRQLFIDK 361
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425
++VDE +A +LV EGF +EE+A V I+E++ I+ FDEET E++ RAR L I +
Sbjct: 362 LDVDEEVADILVQEGFNTLEEIAYVPIAEMSEIDAFDEETINELRKRARAALLTEAIAKE 421
Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485
+K+ E SE L ++ G+D L G+ TMEDLA +VD+L+ +
Sbjct: 422 EKLEEA--SESLLTMDGMDDATAHLLASKGVSTMEDLADLAVDELMEMA----------- 468
Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIE 513
++ + +I+ AR W
Sbjct: 469 ------NMDAERAKQLIMTARAP--WFA 488
>gi|222110449|ref|YP_002552713.1| nusa antitermination factor [Acidovorax ebreus TPSY]
gi|221729893|gb|ACM32713.1| NusA antitermination factor [Acidovorax ebreus TPSY]
Length = 494
Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats.
Identities = 201/514 (39%), Positives = 323/514 (62%), Gaps = 24/514 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
ELL + +A++ EK+++RDVVL + ++ +A + LY DIRV I+ ++G+ FR
Sbjct: 2 NRELLMLVEAISREKNVERDVVLGAVESALAQATKKLYQGEVDIRVSIDRDSGEYETFRR 61
Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
VV + ++N + L AR+R I++G + + + + GR+ +AKQVI+QK+
Sbjct: 62 WLVVPDDAGLQNPDAEELLMDARERVADIEVGEYIEEAVESVPIGRIGAMAAKQVILQKI 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182
R+AER+ +F + +I +GTVKR++ G++IV+ G +G +RR E I +ENLR GDRV
Sbjct: 122 RDAEREMLLNDFMSRGEKIFTGTVKRMDKGDIIVESGRVEGRLRRGEMIPKENLRNGDRV 181
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
++ I +V RG ++LSR+ P+FM++LF EVPEI G++++K+ +RDPGSRAK+AV
Sbjct: 182 RAMIMEVDLTLRGAPIILSRSAPEFMIELFRNEVPEIEQGLLEIKSCARDPGSRAKIAVL 241
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA VT +V+D
Sbjct: 242 SHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSDDPAQFVIGALAPANVTSIVVD 301
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
E+ ++V+V +E L++AIGR GQNVRLAS LTGW I+I+ E + + + + + F
Sbjct: 302 EEKHAMDVVVDEENLAIAIGRGGQNVRLASDLTGWKINIMDAAESAQKQANETDAARRLF 361
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
M+ ++VDE IA++L+ EGFA +EE+A V + E+ IE FDE+T E++ RA++ L ++I
Sbjct: 362 MEKLDVDEEIANILIEEGFASLEEVAYVPLQEMLEIESFDEDTVNELRARAKDALLTMEI 421
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482
++ + VS++L + G+ ++ L E G+ T +DLA ++D+L +
Sbjct: 422 VREESVE--SVSQDLRDLEGLTPELIAKLAEGGVHTRDDLADLAIDELTELTGQ------ 473
Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
+ ++I+ AR W ++
Sbjct: 474 -----------SAEDATALIMKAREH--WFTGQE 494
>gi|217970108|ref|YP_002355342.1| transcription elongation factor NusA [Thauera sp. MZ1T]
gi|217507435|gb|ACK54446.1| NusA antitermination factor [Thauera sp. MZ1T]
Length = 491
Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats.
Identities = 206/509 (40%), Positives = 333/509 (65%), Gaps = 23/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++ +D+V S + ++ A + +D+ V I+ ++GD + R
Sbjct: 4 EILLLVDALAREKNVAKDIVFSALETALASATKKRIHDDADVVVSIDRDSGDYTSKRRWL 63
Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
V+ EEV N ++ + AR+ + IG + + L P+DFGR+ Q+AKQVI+QK+R+A
Sbjct: 64 VMLDEEVANDEAEMGIIDARELRADVQIGDYIEEELEPIDFGRIGAQAAKQVILQKIRDA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER++ +F D+ ++SG++KR+E GN I+++G + V+ RD+ I RENLR GDRVK++
Sbjct: 124 EREQVLNDFLDRKEFLVSGSIKRMERGNAIIEVGRMEAVLPRDQQIPRENLRVGDRVKAF 183
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ + R RGPQ++LSRT P+F++KLF +EVPEI +G++++KA +RD G RAK+AV S+D
Sbjct: 184 LLRIDRGARGPQLVLSRTAPEFLMKLFELEVPEIEDGLLELKACARDAGLRAKIAVKSND 243
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
IDP+G CVG+RGSRV AV E+ E+IDI+VWS D A FV+ AL+PA V +V+DE+
Sbjct: 244 QRIDPIGTCVGLRGSRVTAVRNEIAGEQIDIIVWSQDPAQFVVAALQPAEVVSIVVDEES 303
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
++V+V + L++AIGR GQNV+LAS+LTGWTI++++E+E + ++ FM+
Sbjct: 304 HAMDVVVDENNLAIAIGRSGQNVKLASELTGWTINLMSEQESAEKTAQEQQGLRALFMEK 363
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425
++VDE +A +L+ EGF+ +EE+A V +SE+ IE FDE+T E++ RAR L I +
Sbjct: 364 LDVDEEVADILIEEGFSSLEEVAYVPLSEMLEIEAFDEDTVNELRNRARNVLLTEAIVTE 423
Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485
+++ VS++L + G+D + L + GI+T +DLA +VD+L+ +
Sbjct: 424 EQLE--KVSDDLLGLEGMDKSLAATLAQQGIRTRDDLADLAVDELVEMA----------- 470
Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEK 514
G +++ +++I AR W E+
Sbjct: 471 ------GIDEERAKALISVARAH--WFEE 491
>gi|332290219|ref|YP_004421071.1| transcription elongation factor NusA [Gallibacterium anatis UMN179]
gi|330433115|gb|AEC18174.1| transcription elongation factor NusA [Gallibacterium anatis UMN179]
Length = 495
Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats.
Identities = 200/510 (39%), Positives = 315/510 (61%), Gaps = 19/510 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L A+AV+ EK + R+ + + ++ + + Y D+RV I+ +TGD FR
Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESALAISTKKKYEQDIDVRVSIDQKTGDFVTFRRWL 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVE V + T +I+L+ A+ +P I +G + D + + F R+ +Q+ +QVI K+R+AER
Sbjct: 64 VVENVTHPTKEITLEAAQIEEPEIQLGEYIEDEIESIPFDRITMQTVRQVISAKIRDAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186
++ +FK++ GEII+G VK+V NVI+DLGN ++ +I R++ + REN R GDRV+ +
Sbjct: 124 NKVVEQFKEREGEIITGIVKKVNRENVILDLGNQAEAIILREDLLPRENFRAGDRVRGVL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
Y V + +GPQ+ ++R+ P+ +++LF +EVPEI G++++KA +RD G RAK+AV S D
Sbjct: 184 YRVSSDPKGPQLFVTRSKPEMLIELFKIEVPEIGEGVIEIKAATRDAGVRAKIAVKSHDK 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V +V+DED
Sbjct: 244 RIDPVGACVGMRGARVQAITNELDGERVDIVLWDDNPAQFVINAMAPADVVSIVVDEDKK 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V L+ AIGR GQNV LAS+LTGW +++++ +E Q + + FM+++
Sbjct: 304 SMDIAVEAANLAQAIGRNGQNVNLASRLTGWKLNVMSSDELENKHQLENQKTVNLFMESL 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426
++DE A+LL EGF +EE+A V E+ I+GFDE+ A E++ RA+E L I + ++
Sbjct: 364 DLDEEFANLLTEEGFRTLEEIAYVPTEELLEIDGFDEDLAEELRNRAKEVLTKIALAEEQ 423
Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486
+ + V E L + G++ + V L E I T+E+LA VDDL
Sbjct: 424 ALANIDVEEALLKLDGMNRHLAVKLAEKKITTLEELAEQGVDDLADVE------------ 471
Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
G +Q +I+ AR + W E+
Sbjct: 472 -----GLSAEQAAQLIMAAR-NICWFGNEE 495
>gi|30248764|ref|NP_840834.1| transcription elongation factor NusA [Nitrosomonas europaea ATCC
19718]
gi|30180359|emb|CAD84671.1| S1 RNA binding domain:KH domain:Type 1 KH domain [Nitrosomonas
europaea ATCC 19718]
Length = 490
Score = 455 bits (1170), Expect = e-125, Method: Composition-based stats.
Identities = 210/508 (41%), Positives = 323/508 (63%), Gaps = 23/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + +A+A+EK++D+++V + + ++ AA+ D+RV I+ +TG FR
Sbjct: 4 EILLLVNALAHEKNVDKNIVFTALEMALASAAKKHTRDDIDVRVSIDRDTGGFHCFRRWL 63
Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+V + VE+ QI++ A R+P G + D + + F R+ Q+AKQVI QK+R+A
Sbjct: 64 IVADDPVEHPERQITVSEAVGRNPQAVPGEYIEDLMEDVTFDRIGAQAAKQVIFQKIRDA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER++ +F D+ ++ G +KR++ GN I++ G + V+ RD+ IS ENLR GDRV++Y
Sbjct: 124 EREQNLNDFLDRGEYLVYGVIKRMDRGNAIIEFGKIEAVLPRDQMISHENLRMGDRVRAY 183
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ + R RGPQ++LSRT P F+ KLF +EVPEI GI+++KA +RDPGSRAK+AV S+D
Sbjct: 184 LLRIDRSVRGPQLVLSRTSPAFLAKLFELEVPEIEEGILEIKAAARDPGSRAKIAVKSND 243
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
S +DP+G CVGMRGSRVQAV +EL E++DI+ WS D ATFV+NAL PA+++ +V+DE+
Sbjct: 244 SRVDPIGTCVGMRGSRVQAVTSELAGERVDIIQWSDDQATFVVNALAPAVISSIVVDEEK 303
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
++++V +E L+ AIGR GQNVRLAS+LTGW ++I+TEEE +++ + FM+
Sbjct: 304 HCMDIVVDEENLAQAIGRGGQNVRLASELTGWQLNIMTEEESQEKTEEEAASICELFMEK 363
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425
++VDE + +LV EGF+ +EE+A + I E+ I+ FD ET E++ RAR L I +
Sbjct: 364 LDVDEDVGRILVEEGFSTLEEVAYIPIEEMLEIQEFDRETIEELRNRARNALLTDAIATE 423
Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485
+KI SE L ++ G+D ++ L E GI T E+LA + DDL+ +
Sbjct: 424 EKIG--HASEALLALEGMDIELVRELAEKGISTQEELADLAADDLVELT----------- 470
Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIE 513
G ++ +II AR W
Sbjct: 471 ------GIDFERASKIIIKAREP--WFA 490
>gi|224825864|ref|ZP_03698968.1| NusA antitermination factor [Lutiella nitroferrum 2002]
gi|224602088|gb|EEG08267.1| NusA antitermination factor [Lutiella nitroferrum 2002]
Length = 493
Score = 454 bits (1169), Expect = e-125, Method: Composition-based stats.
Identities = 221/511 (43%), Positives = 334/511 (65%), Gaps = 25/511 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS-DIRVEINPETGDISLFRLL 66
E+L + DA+A EKS+ +DVV + + ++ A + + DIRVEI+ TG FR
Sbjct: 4 EILLLVDALASEKSVSKDVVFTALELALASATKKKFNQDDVDIRVEIDRHTGQYHTFRRW 63
Query: 67 EVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VVE+ +E +I L AR+RDPSI++G V+ +P+ ++FGR+ Q+AKQVI+QK+R+
Sbjct: 64 TVVEDDMLEFDDKEIELADARERDPSIEVGAVIEEPMEAVEFGRIGAQAAKQVILQKIRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ EF + ++SGTVKR+E GN I++ G + V+ R++ I +ENLR GDRVK+
Sbjct: 124 AEREQLLSEFLQRREHLVSGTVKRIERGNAIIECGKLEAVLPREQMIPKENLRVGDRVKA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
Y+ + R RGPQ++LSRT +F++KLF +EVPEI G++++K +RDPG RAK+AV ++
Sbjct: 184 YLMRIDRLGRGPQLVLSRTSREFLIKLFELEVPEIEEGLLEIKEAARDPGLRAKIAVKAN 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP G C+GMRGSRVQ+V EL E++DIV+W+P+ A FVINAL PA V ++++DED
Sbjct: 244 DPRIDPQGTCIGMRGSRVQSVTQELAGERVDIVLWAPEPAQFVINALSPAEVNRIMIDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V ++QL+LAIGR GQNVRLA++LTGW ++I+T E Q++ + FM+
Sbjct: 304 NHAMDVVVEEDQLALAIGRSGQNVRLAAELTGWYLNIMTVTEAEEKHQEEDAALRETFMK 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+ VDE A LV EGFA +EE+A V I+E+ IEGF+EE E++ RAR+ L + I
Sbjct: 364 HLGVDEATAMTLVQEGFATLEEVAYVPIAEMLEIEGFEEEQVNELRSRARDALLTLAIAS 423
Query: 425 QKKIRELGVSEELCSIPGI-DSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483
++K+ VS++L I G+ D+ + L ENG+ T ++LA +VDDL+ +
Sbjct: 424 EEKVE--SVSDDLKGIEGLEDADLVRKLAENGVTTRDELADLAVDDLVDMT--------- 472
Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
G + ++I+ AR W +
Sbjct: 473 --------GMEAEAARAIIMKAREH--WFAQ 493
>gi|229592637|ref|YP_002874756.1| transcription elongation factor NusA [Pseudomonas fluorescens
SBW25]
gi|229364503|emb|CAY52353.1| transcription termination factor [Pseudomonas fluorescens SBW25]
Length = 493
Score = 454 bits (1169), Expect = e-125, Method: Composition-based stats.
Identities = 209/509 (41%), Positives = 319/509 (62%), Gaps = 22/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + ++V+ EK + +V+ + ++ A + + D+RVEIN TG FR
Sbjct: 4 EVLLVVESVSNEKGVPANVIFEALELALATATKKRFEDEVDLRVEINRHTGAYETFRRWT 63
Query: 68 VVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVE ++++ + + P +G VV + + ++FGR+A Q+AKQVI+QKVREA
Sbjct: 64 VVEEADLDDPAIETWPSKVAETHPGAQVGDVVEEKIESIEFGRIAAQTAKQVIVQKVREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER + +++++GEIISGTVK+V NVIVDLGN+ + ++ R++ ISRE R G R+++
Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRLRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S
Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED
Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F+
Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFID 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+ VDE +A +LV EGF +EE+A V + E+ +I+GFDE+T E++ RA++ L I
Sbjct: 364 ELEVDEDLAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDTVNELRARAKDRLLTKAIAT 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +E+L S+ G+D + + L G+ T EDLA S
Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQS-----------------I 466
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513
D L G D+ +I+ AR W E
Sbjct: 467 DDLLDIDGIDDDRAGKLIMAARAH--WFE 493
>gi|330969650|gb|EGH69716.1| transcription elongation factor NusA [Pseudomonas syringae pv.
aceris str. M302273PT]
Length = 493
Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats.
Identities = 207/509 (40%), Positives = 324/509 (63%), Gaps = 22/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR
Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRRWT 63
Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVREA
Sbjct: 64 VVEDEDLDDPAYELAVDQAQAKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER + +++++GEIISGTVK+V NVIVDLGN+ + ++ R++ ISRE R G RV++
Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S
Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKVAVRSK 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED
Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F++
Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFIE 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+ VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I
Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAIAT 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +E+L S+ G+D + + L G+ T EDLA S
Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQS-----------------I 466
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513
D L G D+ +I+ AR W E
Sbjct: 467 DDLLDIDGIDDDRAGKLIMAARAH--WFE 493
>gi|253995583|ref|YP_003047647.1| transcription elongation factor NusA [Methylotenera mobilis JLW8]
gi|253982262|gb|ACT47120.1| NusA antitermination factor [Methylotenera mobilis JLW8]
Length = 488
Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats.
Identities = 205/507 (40%), Positives = 334/507 (65%), Gaps = 25/507 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A+EK++D+ V+ + + ++ A + + +D+RV I+ E+G+ FR +
Sbjct: 4 EILLLVDALAHEKNVDKSVIFTALELALASATKKKHHDDADVRVAIDRESGEYQTFRRWQ 63
Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
V+ +EN QI + +R + IG +PL ++FGR+ Q+AKQVI+QKVREA
Sbjct: 64 YVDYDLLENSAYQIDEED--ERSKGLTIGDYYEEPLENLEFGRIGAQAAKQVILQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER++ +F + ++++G +KR+E GN I+++G + ++ R++ I +ENLR GDRV++Y
Sbjct: 122 EREQILQDFLARDEKLVTGVIKRMEKGNAIIEVGRIESLLPREQMIPKENLRVGDRVRAY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ + R RGPQ++LSR P+F+V+LF +EVPEI G++++++ +RDPG R+K+AV S+D
Sbjct: 182 LLRIERSGRGPQLILSRIIPEFLVRLFELEVPEIEEGLLEIRSAARDPGLRSKIAVKSND 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DPVG CVGMRGSRVQAV EL E++DIV+WS + A FVINA+ PA V+ +V+DED
Sbjct: 242 QRLDPVGTCVGMRGSRVQAVTGELAGERVDIVLWSMEPAQFVINAMSPAEVSSIVVDEDA 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
++V+V +EQL+LAIGR GQNVRLAS+LTGWT++I+T ++ + Q+++ +Q FM+
Sbjct: 302 HSMDVVVEEEQLALAIGRSGQNVRLASELTGWTLNILTVDQAAQKNQEEYAGVSQLFMEK 361
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425
++VDE +A +LV EGF+ +EE+A V ++E+ IE FDE+T E++ RAR L I +
Sbjct: 362 LDVDEEVAEILVQEGFSTLEEIAYVPLAEMNQIEAFDEDTVEELRKRARAALLTEAIAKE 421
Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485
+K+ E +L ++ G+D L GI TM+DLA ++D+L+ +
Sbjct: 422 EKVEEAAE--DLLTLEGMDDATAHQLAAKGISTMDDLAELAIDELVELT----------- 468
Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWI 512
+++ +++I+ AR W
Sbjct: 469 ------NMDEERAKTLIMTARAP--WF 487
>gi|330950306|gb|EGH50566.1| transcription elongation factor NusA [Pseudomonas syringae Cit 7]
Length = 493
Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats.
Identities = 207/509 (40%), Positives = 323/509 (63%), Gaps = 22/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR
Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRRWT 63
Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVE+ +++ + ++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVREA
Sbjct: 64 VVEDEDLDDPAHEFAVDQAQAKKPGAVAGDLIEEKIESIEFGRIAAQTAKQVIVQKVREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER + +++++GEIISGTVK+V NVIVDLGN+ + ++ R++ ISRE R G RV++
Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S
Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED
Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F++
Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFIE 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+ V+E +A +LV EGF +EE+A V + E+ +I+GFDEE E++ RA++ L I
Sbjct: 364 ELQVEEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEEIVNELRARAKDCLLTKAIAT 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +E+L S+ G+D + + L G+ T EDLA S
Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQS-----------------I 466
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513
D L G D+ +I+ AR W E
Sbjct: 467 DDLLDIDGIDDDRAGKLIMAARAH--WFE 493
>gi|28871625|ref|NP_794244.1| N utilization substance protein A [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213966648|ref|ZP_03394799.1| N utilization substance protein A [Pseudomonas syringae pv. tomato
T1]
gi|301383158|ref|ZP_07231576.1| transcription elongation factor NusA [Pseudomonas syringae pv.
tomato Max13]
gi|302063407|ref|ZP_07254948.1| transcription elongation factor NusA [Pseudomonas syringae pv.
tomato K40]
gi|302133780|ref|ZP_07259770.1| transcription elongation factor NusA [Pseudomonas syringae pv.
tomato NCPPB 1108]
gi|28854877|gb|AAO57939.1| N utilization substance protein A [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213928498|gb|EEB62042.1| N utilization substance protein A [Pseudomonas syringae pv. tomato
T1]
gi|330877234|gb|EGH11383.1| transcription elongation factor NusA [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
gi|331016647|gb|EGH96703.1| transcription elongation factor NusA [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 493
Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats.
Identities = 207/509 (40%), Positives = 324/509 (63%), Gaps = 22/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR
Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRRWT 63
Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVREA
Sbjct: 64 VVEDEDLDDPAYELAVDQAQAKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER + +++++GEIISGTVK+V NVIVDLGN+ + ++ R++ ISRE R G RV++
Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S
Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED
Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F++
Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFIE 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+ VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I
Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAIAT 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +E+L S+ G+D + + L G+ T EDLA S
Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVVTREDLAEQS-----------------I 466
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513
D L G D+ +I+ AR W E
Sbjct: 467 DDLLDIDGIDDDRAGKLIMAARAH--WFE 493
>gi|77457005|ref|YP_346510.1| transcription elongation factor NusA [Pseudomonas fluorescens
Pf0-1]
gi|77381008|gb|ABA72521.1| transcription termination factor [Pseudomonas fluorescens Pf0-1]
Length = 493
Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats.
Identities = 208/509 (40%), Positives = 317/509 (62%), Gaps = 22/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + ++V+ EK + V+ + ++ A + + D+RVEIN TG FR
Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVDLRVEINRHTGSYETFRRWT 63
Query: 68 VVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVE ++++ + + P +G VV + + ++FGR+A Q+AKQVI+QKVREA
Sbjct: 64 VVEENDLDDPAIETWPSKVAETHPGAKVGDVVEEKIESIEFGRIAAQTAKQVIVQKVREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER + +++++GEIISGTVK+V NVIVDLGN+ + ++ R++ ISRE R G R+++
Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRLRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S
Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED
Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F+
Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFID 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+ VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I
Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAIAT 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +E+L S+ G+D + + L G+ T EDLA S
Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQS-----------------I 466
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513
D L G D+ +I+ AR W E
Sbjct: 467 DDLLDIDGIDDDRAGKLIMAARAH--WFE 493
>gi|54307814|ref|YP_128834.1| transcription elongation factor NusA [Photobacterium profundum SS9]
gi|46912237|emb|CAG19032.1| putative transcription pausing L factor [Photobacterium profundum
SS9]
Length = 495
Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats.
Identities = 196/511 (38%), Positives = 317/511 (62%), Gaps = 19/511 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + + D+RV I+ +TG ++ FR
Sbjct: 2 NKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKHEAEIDVRVAIDRKTGQVATFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
V+EV T +++++ A+ D +I++GG V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLAVDEVTQPTLEMTIEAAQYDDETIELGGFVEDEIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER++ +F D GE+I+G VK+V VI+DLGN+ + VI+RD+ + REN R GDR++
Sbjct: 122 EREQIVEQFMDNEGELITGIVKKVNRDAVIIDLGNNAEAVIQRDDQLPRENFRSGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y VR E RG Q+ ++R+ + +++LF +EVPEI ++++ +RDPGSRAK+AV ++
Sbjct: 182 LLYAVRPEARGFQLFMTRSKAEMLLELFRIEVPEIGEELIELMGAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDIV+W ++A +VINA+ PA V +++DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELAGERIDIVLWDENAAQYVINAMAPAEVASIIVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V K+ L+ AIGR GQN+RLASQLTGW ++++T E+ +++ F +
Sbjct: 302 SHTMDIAVEKDNLAQAIGRSGQNIRLASQLTGWELNVMTVEDLQKKHKEEAQVSIDTFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE A LLV EGF +EE+A V +SE+ +EG DE+ E++ A+E L + +
Sbjct: 362 YLDIDEDFATLLVQEGFTTLEEIAYVPVSELMDVEGLDEDAINELRKCAKEALTTLALAQ 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + + +L + G++ ++ L GI T+EDLA DDLL E
Sbjct: 422 EESFEGVEPAADLLGLDGLERELAFRLAAKGICTLEDLADQGTDDLLDLEE--------- 472
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
+ + +I+ AR + W E
Sbjct: 473 --------MGEAKAGELIMAAR-NICWFSDE 494
>gi|66047408|ref|YP_237249.1| transcription elongation factor NusA [Pseudomonas syringae pv.
syringae B728a]
gi|289676023|ref|ZP_06496913.1| transcription elongation factor NusA [Pseudomonas syringae pv.
syringae FF5]
gi|302185431|ref|ZP_07262104.1| transcription elongation factor NusA [Pseudomonas syringae pv.
syringae 642]
gi|63258115|gb|AAY39211.1| Transcription termination factor NusA:Transcription termination
factor NusA, C-terminal duplication [Pseudomonas
syringae pv. syringae B728a]
gi|330937945|gb|EGH41732.1| transcription elongation factor NusA [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 493
Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats.
Identities = 207/509 (40%), Positives = 324/509 (63%), Gaps = 22/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR
Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRRWT 63
Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVREA
Sbjct: 64 VVEDEDLDDPAYELAVDQAQAKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER + +++++GEIISGTVK+V NVIVDLGN+ + ++ R++ ISRE R G RV++
Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S
Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED
Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F++
Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFIE 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+ VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I
Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAIAT 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +E+L S+ G+D + + L G+ T EDLA S
Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQS-----------------I 466
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513
D L G D+ +I+ AR W E
Sbjct: 467 DDLLDIDGIDDDRAGKLIMAARAH--WFE 493
>gi|89900917|ref|YP_523388.1| NusA antitermination factor [Rhodoferax ferrireducens T118]
gi|89345654|gb|ABD69857.1| NusA antitermination factor [Rhodoferax ferrireducens T118]
Length = 498
Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats.
Identities = 194/518 (37%), Positives = 320/518 (61%), Gaps = 24/518 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +A++ EK+++ DVV + ++ +A R +Y DIRV ++ ++G+ FR
Sbjct: 2 NREMLMLVEAISREKNVELDVVFGAVEAALAQATRKIYPGDVDIRVALDRDSGNYETFRR 61
Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
VV + ++ +I L A+++ P I++ + + + + GR+ +AKQVI+QK+
Sbjct: 62 WHVVPDEAGLQLPDQEILLFEAKEQIPDIEVDEYIEETVESLPIGRIGAMAAKQVILQKI 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182
R+AER+ +F + I GTVKR++ G++IV+ G +G +RR E I +ENLR GDRV
Sbjct: 122 RDAEREMLLNDFMSRGDNIFVGTVKRMDKGDLIVESGRVEGRLRRTEMIPKENLRVGDRV 181
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
++ I +V RG ++LSR+ P+FM++LF EVPEI G++++K+ +RD GSRAK+AV
Sbjct: 182 RAMIMEVDLTLRGAPIILSRSAPEFMIELFRQEVPEIEQGLLEIKSCARDVGSRAKIAVL 241
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
S D +DP+G CVG+RG+RV V EL E++DIV+WS D A FVI AL PA V+ +V+D
Sbjct: 242 SHDKRVDPIGTCVGVRGTRVNGVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVVD 301
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
E+ ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+ E + + + + + F
Sbjct: 302 EERHAMDVVVDEENLAIAIGRGGQNVRLASELTGWKINILDAAESAQKQASETDSGRKLF 361
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
M+ ++VDE IA LL+AEGF +E++A V + E+ IE FDE+TA E++ RA++ L ++I
Sbjct: 362 MEHLDVDEEIADLLIAEGFTSLEQVAYVPLEEMLEIESFDEDTANELRTRAKDALLTMEI 421
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482
++ ++ VS +L + G+ ++ L +G+ ++DLA +VD+L +
Sbjct: 422 AHEESVQA--VSLDLRDLQGLTPELIAKLATSGVNNLDDLADLAVDELTEITGQ------ 473
Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADE 520
D +++I+ AR W + + E
Sbjct: 474 -----------SADDAKTLIMKAREH--WFTNDAASQE 498
>gi|88812961|ref|ZP_01128204.1| transcription elongation factor NusA [Nitrococcus mobilis Nb-231]
gi|88789739|gb|EAR20863.1| transcription elongation factor NusA [Nitrococcus mobilis Nb-231]
Length = 500
Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats.
Identities = 201/511 (39%), Positives = 319/511 (62%), Gaps = 23/511 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA++ EK + ++V+ + ++ A R + D RV +N TG+ FR
Sbjct: 4 EVLLVVDAISNEKGVSKEVIFEAVEAALASATRKRHPEDIDARVAVNRTTGEYETFRRWL 63
Query: 68 VVEEVEN---YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV++ E+ +I+L AR ++P+I+ G + P+ ++FGR+A Q+AKQVI+QKVRE
Sbjct: 64 VVDDAESVQVPQREIALAEARAQEPTIEAGQYIEQPMESVEFGRIAAQTAKQVIVQKVRE 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVK 183
AER + +KD+ GE+++G VKRVE G+V +DLG + + I R+E I RE +RPGDR++
Sbjct: 124 AERAKVITAYKDRQGELMTGIVKRVERGHVYLDLGGNAEAFIAREEMIPREAVRPGDRLR 183
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
++ ++ E RGPQ+++SRT P+F+++LF +EVPE+ ++Q+ +RD G RAK+AV +
Sbjct: 184 GWLREICTEARGPQLVVSRTAPEFLIELFKLEVPEVGQDLLQLMGAARDAGQRAKIAVRA 243
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
D+ IDPVGACVGMRGSRVQAV EL E+IDI++W + A +VINA+ PA V +++DE
Sbjct: 244 LDARIDPVGACVGMRGSRVQAVSNELAGERIDIILWDENPAQYVINAMAPAEVESIIVDE 303
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
D +++ V +EQLS AIGR GQNVRLA +LTGW ++++T EE + + +E + F+
Sbjct: 304 DRHSMDIAVSQEQLSQAIGRGGQNVRLAGELTGWELNVMTSEEAQAKSEAEADELIELFV 363
Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423
+++VDE +A +L EGF+ VEE+A V ++E IE FDE+ ++ RAR+ L ++
Sbjct: 364 SSLDVDEEVAEILAREGFSSVEEIAYVPVAEFLEIEEFDEDIVELLRNRARDALLTRELA 423
Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483
++ + EL ++ G+D + G+ T+EDLA SVD+L+
Sbjct: 424 EVEQDSPAKPTPELLALEGMDEALAWQFAARGVVTVEDLADQSVDELMEIE--------- 474
Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
G + + ++I+ AR W
Sbjct: 475 --------GMDEQRAAALIMKAREP--WFAD 495
>gi|223042074|ref|ZP_03612250.1| transcription elongation protein NusA [Actinobacillus minor 202]
gi|223017149|gb|EEF15585.1| transcription elongation protein NusA [Actinobacillus minor 202]
Length = 498
Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats.
Identities = 190/513 (37%), Positives = 306/513 (59%), Gaps = 25/513 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L A+AV+ EK + ++ + + ++ A + D+RV ++ +TG FR
Sbjct: 4 EILFAAEAVSNEKQLPKEAIFEALETALTIATKKSSELDIDVRVVVDRKTGSFQTFRRWL 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVE+V N T +ISL+ A+ +P I +G VV D + ++FGRVA+Q+ QV+ K+REAE+
Sbjct: 64 VVEDVHNMTREISLEAAQFENPDIQLGDVVEDEVESIEFGRVAIQTFGQVVKTKIREAEK 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDETISRENLRPGDR 181
+ EF+ G+IIS TVK+V N+ ++L + VI R++ + REN RPGDR
Sbjct: 124 GKIIDEFRSDEGKIISATVKKVTRDNIFLELQGKTEDIKGEAVIAREDMLPRENFRPGDR 183
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V+ +Y ++ E +GPQ+ L+R P + +LF +EVPEI +++K +RDPGSRAK+AV
Sbjct: 184 VRGVLYAIKPESKGPQIFLTRAKPVMLTELFKLEVPEIGEQTIEIKGAARDPGSRAKIAV 243
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ + +
Sbjct: 244 KSNDKRIDPVGACVGMRGARVQAISNELGGERVDIVLWDDNPAQFVINAMAPADVSSITI 303
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
+++ +++ V + L+ AIGR GQNVRLA+QLTGWT++++T EE + Q++ +
Sbjct: 304 NDETHSMDIAVEAKNLAQAIGRNGQNVRLATQLTGWTLNVMTVEELAKKNQEEDGKVINL 363
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGI 420
A+ +DE A +L+ EGF +E +A V + + +I+G DE+ E+Q RA+ +
Sbjct: 364 LTSALEIDEEFAQVLIEEGFTSLEAIAYVPVDALTAIDGLEDEDLVEELQARAKNAITKQ 423
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ ++ +++ + E+L ++ G++ I L E GI T+EDLA D+L E
Sbjct: 424 ALAEEEALKQAHIDEQLLNLEGMERHIAFRLAEKGITTLEDLAEQGTDELADIEE----- 478
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
+ +I+ AR ++ W
Sbjct: 479 ------------LSAEAAGELIMAAR-QICWFS 498
>gi|254284119|ref|ZP_04959087.1| N utilization substance protein A [gamma proteobacterium NOR51-B]
gi|219680322|gb|EED36671.1| N utilization substance protein A [gamma proteobacterium NOR51-B]
Length = 499
Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats.
Identities = 205/517 (39%), Positives = 326/517 (63%), Gaps = 22/517 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L +A+AV+ EK + D++ + ++ AA+ Y SDI V+I+ ETGD R
Sbjct: 2 NKEILMVAEAVSNEKGVSEDIIFEAIELALATAAKKRYDEESDIEVQIDRETGDYVTTRR 61
Query: 66 LEVVEEVEN--YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
VV + E Q + + A + + + G V + + +DFGR+A Q+AKQVI+Q+VR
Sbjct: 62 WLVVPDSELALLGTQFTTEEAIEVNAELKPGDVHEEVVDNVDFGRIAAQTAKQVIVQRVR 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182
+AER + +++ +VGE+++GTVK+V NVIVDLG + +G++ R E + RE R DRV
Sbjct: 122 DAERAQIVEQYQSRVGELLAGTVKKVTRDNVIVDLGGNAEGLLPRTELVGRETFRINDRV 181
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
++ + ++ E RGPQ++LSR + +++LF +EVPEI G++Q++A +RDPGSRAK+AV
Sbjct: 182 RAILTEINTESRGPQLILSRACKEMLIELFKIEVPEIAEGVIQIRAAARDPGSRAKIAVK 241
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
+ D IDPVGACVGMRGSRVQAV EL +E++DI++W ++A VINA+ PA V +V+D
Sbjct: 242 TGDQRIDPVGACVGMRGSRVQAVSNELDNERVDIILWDDNAAQLVINAMSPAEVESIVVD 301
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
ED +EV V ++ L+ AIGR GQNVRLAS LT WTI++++ ++ ++ + + + F
Sbjct: 302 EDSNTMEVAVAEDNLAQAIGRGGQNVRLASDLTEWTINVMSVDDAIEKQEAEAIQVMETF 361
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
M A++VDE +A +LV EGF +EE+A V + E+ SIEGFDE+ + E++ RA++ L + I
Sbjct: 362 MNALDVDEDVAGVLVEEGFTTLEEVAYVPLEEMMSIEGFDEDISEELRARAKDALLTMAI 421
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482
++++ +E+L ++ G++ + L GI TMEDLA VDD++
Sbjct: 422 ASEEQLGANEPAEDLLAMEGMERHLAFVLASRGIVTMEDLAEQGVDDIMDIE-------- 473
Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVAD 519
+++ ++I+ AR W +E+ A
Sbjct: 474 ---------DMTEERAAALIMTAREP--WFAEEESAS 499
>gi|289624601|ref|ZP_06457555.1| transcription elongation factor NusA [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|330868245|gb|EGH02954.1| transcription elongation factor NusA [Pseudomonas syringae pv.
aesculi str. 0893_23]
Length = 493
Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats.
Identities = 208/509 (40%), Positives = 324/509 (63%), Gaps = 22/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR
Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRRWT 63
Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVREA
Sbjct: 64 VVEDEDLDDPAYELAVDQAQVKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER + +++++GEIISGTVK+V NVIVDLGN+ + ++ R++ ISRE R G RV++
Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S
Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED
Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F++
Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIHAKQQAETGDILRNFIE 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+ VDE +A +LV EGF +EE+A V + E+ +I+GFDEE E++ RA++ L I
Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEEIVNELRARAKDRLLTKAIAT 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +E+L S+ G+D + + L G+ T EDLA S
Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQS-----------------I 466
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513
D L G D+ +I+ AR W E
Sbjct: 467 DDLLDIDGIDDDRAGKLIMAARAH--WFE 493
>gi|330958050|gb|EGH58310.1| transcription elongation factor NusA [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 493
Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats.
Identities = 206/509 (40%), Positives = 324/509 (63%), Gaps = 22/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR
Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRRWT 63
Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVREA
Sbjct: 64 VVEDEDLDDPAYELAVDQAQAKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER + +++++GEIISGTVK+V NVIVDLGN+ + ++ R++ ISRE R G R+++
Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRMRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S
Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED
Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F++
Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFIE 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+ VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I
Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAIAT 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +E+L S+ G+D + + L G+ T EDLA S
Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQS-----------------I 466
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513
D L G D+ +I+ AR W E
Sbjct: 467 DDLLDIDGIDDDRAGKLIMAARAH--WFE 493
>gi|240949224|ref|ZP_04753568.1| transcription elongation factor NusA [Actinobacillus minor NM305]
gi|240296340|gb|EER46984.1| transcription elongation factor NusA [Actinobacillus minor NM305]
Length = 498
Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats.
Identities = 191/513 (37%), Positives = 308/513 (60%), Gaps = 25/513 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L A+AV+ EK + ++ + + ++ A + D+RV ++ +TG+ FR
Sbjct: 4 EILFAAEAVSNEKQLPKEAIFEALETALTIATKKSSDLDIDVRVSVDRKTGNFQTFRRWL 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV N T +ISL+ A+ DP+I +G +V D + ++FGRVA+Q+ QV+ K+REAE+
Sbjct: 64 VVEEVHNMTREISLEAAQFEDPNIQLGDIVEDEVESIEFGRVAIQTFGQVVKTKIREAEK 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDETISRENLRPGDR 181
+ EF+ G+IIS TVK+V N+ ++L + VI R++ + REN RPGDR
Sbjct: 124 GKIIDEFRSDEGKIISATVKKVTRDNIFLELQGKTEDIKGEAVIVREDMLPRENFRPGDR 183
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V+ +Y ++ E +GPQ+ L+R P + +LF +EVPEI +++K +RDPGSRAK+AV
Sbjct: 184 VRGVLYAIKPESKGPQIFLTRAKPVMLTELFKLEVPEIGEQTIEIKGAARDPGSRAKIAV 243
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +++
Sbjct: 244 KSNDKRIDPVGACVGMRGARVQAISNELGGERVDIVLWDDNPAQFVINAMAPADVSSIII 303
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
+++ +++ V + L+ AIGR GQNVRLA+QLTGWT++++T EE Q++ +
Sbjct: 304 NDETHSMDIAVEAKNLAQAIGRNGQNVRLATQLTGWTLNVMTVEELEKKNQEEDGKVINL 363
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGI 420
A+ +DE A +L+ EGF +E +A V + + +I+G DE+ E+Q RA+ +
Sbjct: 364 LTSALEIDEEFAQVLIEEGFTSLEAIAYVPVDALTAIDGLEDEDLVEELQARAKNAITKQ 423
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ ++ +++ + E+L ++ G++ I L E GI T+EDLA D+L E
Sbjct: 424 ALAEEEALKQAHIDEKLLNLEGMERHIAFRLAEKGITTLEDLAEQGTDELADIEE----- 478
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
+ +I+ AR ++ W
Sbjct: 479 ------------LSAEAAGELIMAAR-QICWFS 498
>gi|146308624|ref|YP_001189089.1| transcription elongation factor NusA [Pseudomonas mendocina ymp]
gi|145576825|gb|ABP86357.1| NusA antitermination factor [Pseudomonas mendocina ymp]
Length = 493
Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats.
Identities = 207/509 (40%), Positives = 318/509 (62%), Gaps = 22/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + ++V+ EK + V+ + ++ A + + D+RV IN + G FR
Sbjct: 4 EVLLVVESVSNEKGVPAGVIFEALELALATATKKRFEDEVDLRVSINRQNGSYETFRRWT 63
Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV+E E+ Q++ + + + IG V+ + + ++FGR+A Q+AKQVI+QKVREA
Sbjct: 64 VVDESEFEDPAYQLTEDMPQAVEAKAKIGDVLEEKVESIEFGRIAAQTAKQVIVQKVREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER + +++++GEIISGTVK+V NVIVDLGN+ + ++ R++ I RE R G R+++
Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIIPRETFRVGVRLRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ ++R E RGPQ++LSRT P+ +++LF +EVPEI G++ VKA SRDPGSRAK+AV S
Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIDVKAASRDPGSRAKIAVRSK 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED
Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V ++ L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + Q F+
Sbjct: 304 AHAMDIAVAEDNLAQAIGRGGQNVRLASQLTGWTLNVMTEADIQAKQQAETGDIMQSFID 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+ VDE +A +LV EGF +EE+A V + E+ SI+GFDEE E++ RA++ L I
Sbjct: 364 ELEVDEELAQVLVEEGFTSLEEIAYVPMEEMLSIDGFDEEIVNELRARAKDRLLTKAIAN 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +++L + G+D + + L G+ T EDLA S
Sbjct: 424 EEKLADAHPADDLLELEGMDKALALELALRGVITREDLAEQS-----------------I 466
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513
D L G +++ +I+ AR W E
Sbjct: 467 DDLLDIDGIDEERAGKLIMAARAH--WFE 493
>gi|330888659|gb|EGH21320.1| transcription elongation factor NusA [Pseudomonas syringae pv. mori
str. 301020]
Length = 493
Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats.
Identities = 207/509 (40%), Positives = 324/509 (63%), Gaps = 22/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR
Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRRWT 63
Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVREA
Sbjct: 64 VVEDEDLDDPAYELAVDQAQVKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER + +++++GEIISGTVK+V NVIVDLGN+ + ++ R++ ISRE R G RV++
Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSR+K+AV S
Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRSKIAVRSK 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED
Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F++
Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFIE 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+ VDE +A +LV EGF +EE+A V + E+ +I+GFDEE E++ RA++ L I
Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEEIVNELRARAKDRLLTKAIAT 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +E+L S+ G+D + + L G+ T EDLA S
Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQS-----------------I 466
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513
D L G D+ +I+ AR W E
Sbjct: 467 DDLLDIDGIDDDRAGKLIMAARAH--WFE 493
>gi|71734581|ref|YP_276312.1| transcription elongation factor NusA [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|257482262|ref|ZP_05636303.1| transcription elongation factor NusA [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|289646960|ref|ZP_06478303.1| transcription elongation factor NusA [Pseudomonas syringae pv.
aesculi str. 2250]
gi|298488455|ref|ZP_07006486.1| Transcription termination protein NusA [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|71555134|gb|AAZ34345.1| N utilization substance protein A [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|298157080|gb|EFH98169.1| Transcription termination protein NusA [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|330987054|gb|EGH85157.1| transcription elongation factor NusA [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331011498|gb|EGH91554.1| transcription elongation factor NusA [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 493
Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats.
Identities = 208/509 (40%), Positives = 324/509 (63%), Gaps = 22/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR
Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRRWT 63
Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVREA
Sbjct: 64 VVEDEDLDDPAYELAVDQAQVKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER + +++++GEIISGTVK+V NVIVDLGN+ + ++ R++ ISRE R G RV++
Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S
Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED
Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F++
Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFIE 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+ VDE +A +LV EGF +EE+A V + E+ +I+GFDEE E++ RA++ L I
Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEEIVNELRARAKDRLLTKAIAT 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +E+L S+ G+D + + L G+ T EDLA S
Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQS-----------------I 466
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513
D L G D+ +I+ AR W E
Sbjct: 467 DDLLDIDGIDDDRAGKLIMAARAH--WFE 493
>gi|330504828|ref|YP_004381697.1| transcription elongation factor NusA [Pseudomonas mendocina NK-01]
gi|328919114|gb|AEB59945.1| transcription elongation factor NusA [Pseudomonas mendocina NK-01]
Length = 493
Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats.
Identities = 206/509 (40%), Positives = 318/509 (62%), Gaps = 22/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + ++V+ EK + V+ + ++ A + + D+RV IN + G FR
Sbjct: 4 EVLLVVESVSNEKGVPAGVIFEALELALATATKKRFEDEVDLRVSINRQNGSYETFRRWT 63
Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV+E E+ Q++ + + + IG V+ + + ++FGR+A Q+AKQVI+QKVREA
Sbjct: 64 VVDESEFEDPAYQLTEDMPQAVEAKAKIGDVLEEKVESIEFGRIAAQTAKQVIVQKVREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER + +++++GEIISGTVK+V NVIVDLGN+ + ++ R++ I RE R G R+++
Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIIPRETFRVGVRLRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ ++R E RGPQ++LSRT P+ +++LF +EVPEI G++ VKA SRDPGSRAK+AV S
Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIDVKAASRDPGSRAKIAVRSK 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED
Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V ++ L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + Q F+
Sbjct: 304 AHAMDIAVGEDNLAQAIGRGGQNVRLASQLTGWTLNVMTEADIQAKQQAETGDIMQSFID 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+ VDE +A +LV EGF +EE+A V + E+ SI+GFDE+ E++ RA++ L I
Sbjct: 364 ELEVDEELAQVLVEEGFTSLEEIAYVPMEEMLSIDGFDEDIVNELRARAKDRLLTKAIAN 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +++L + G+D + + L G+ T EDLA S
Sbjct: 424 EEKLADAHPADDLLELEGMDKALALELALRGVITREDLAEQS-----------------I 466
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513
D L G +++ +I+ AR W E
Sbjct: 467 DDLLDIDGIDEERAGKLIMAARAH--WFE 493
>gi|171058383|ref|YP_001790732.1| NusA antitermination factor [Leptothrix cholodnii SP-6]
gi|170775828|gb|ACB33967.1| NusA antitermination factor [Leptothrix cholodnii SP-6]
Length = 492
Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats.
Identities = 202/511 (39%), Positives = 324/511 (63%), Gaps = 24/511 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
ELL + DA++ EK++DR+VV + ++ A + LY DIRV ++ +TG FR
Sbjct: 2 NRELLMLVDAISREKNVDREVVFGAVEAALASATKKLYEGEVDIRVAVDRDTGVYETFRR 61
Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
VV + ++ +I A+++ I++ + + + + GR+ Q+AKQVI+QK+
Sbjct: 62 WHVVPDEAGLQLPEAEILHFEAKEQIDDIEVDDYLEESVESVPIGRIGAQAAKQVILQKI 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182
R+AER++ +F + +I GTVKR++ G+++V+ G +G +RR E I +ENLR GDRV
Sbjct: 122 RDAEREQLLNDFMSRGEKIFVGTVKRLDKGDLVVESGRVEGRLRRSELIPKENLRTGDRV 181
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
++ I +V RGPQ++LSR+ P+FM++LF +EVPEI G++++K+ +RD GSRAK+AV
Sbjct: 182 RAIIVEVDPTLRGPQIVLSRSAPEFMIELFRLEVPEIEQGLLEIKSCARDSGSRAKIAVV 241
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
S D +DP+G CVG+RGSRV AV EL E++DIV+WS D A FVI AL PA V +V+D
Sbjct: 242 SHDRRVDPIGTCVGVRGSRVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVQSIVVD 301
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
E+ ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T EE + + + + F
Sbjct: 302 EEKHAMDVVVDEENLAIAIGRGGQNVRLASELTGWRINIMTAEESQAKQATESDSIRKLF 361
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
+ ++VDE +A +L+AEGF +EE+A V + E+ IE FDE+T E++ RA++ L ++I
Sbjct: 362 VDKLDVDEDVADILIAEGFTSLEEVAYVPMQEMLEIESFDEDTVHELRTRAKDALLTMEI 421
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482
++K+ E VS++L + G+++++ L + GI T +DLA +VD+L +
Sbjct: 422 VNEEKVDE--VSQDLRDLEGLNAELIGKLSDGGIHTRDDLADLAVDELTEMT-------- 471
Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
G + +++I+ AR W
Sbjct: 472 ---------GIDDNAAKALILKAREH--WFT 491
>gi|145589410|ref|YP_001156007.1| transcription elongation factor NusA [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|145047816|gb|ABP34443.1| NusA antitermination factor [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
Length = 493
Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats.
Identities = 199/510 (39%), Positives = 328/510 (64%), Gaps = 25/510 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66
E+L +ADA+A EK++D+ +V + ++ A + Y DIRV I+ E+G+ FR
Sbjct: 4 EVLMLADALAREKNVDQAIVFEALEMALASATKKRYATEDVDIRVSIDRESGEYETFRRW 63
Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
VV + ++ +I A+++ I++G + + + + FGR+ Q+AKQVI+Q++R
Sbjct: 64 LVVPDEAGLQEPDKEILQFEAKEQLSDIEVGDYIEEQIESLAFGRIGAQAAKQVILQRIR 123
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183
+AER++ ++ ++ ++++GTVKR + +I++ G + ++RRD+ I +ENLR GDRV+
Sbjct: 124 DAEREQILNDYLERGEKVMTGTVKRADKNGLIIESGRVEALLRRDQMIPKENLRSGDRVR 183
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+YI V RE RGPQ+ LSRT P F++KLF EVPE+ G++++K +RDPG RAK+AV +
Sbjct: 184 AYILKVDREARGPQIELSRTCPDFLIKLFENEVPEMEQGLLEIKGAARDPGIRAKIAVIT 243
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V+ +V+DE
Sbjct: 244 YDKRIDPIGTCVGVRGTRVTAVRNEVAGEAVDIVLWSEDPAQFVIGALAPAQVSSIVVDE 303
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
+ ++V+V +E L++AIGR GQNVRLAS LTGW I+I+T EE + +K+ + Q FM
Sbjct: 304 ERHAMDVVVDEENLAIAIGRSGQNVRLASDLTGWQINIMTPEESAEKTEKEASSVRQLFM 363
Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423
++VD+ +A +L+ EGF +EE+A V +SE+ I+ FDE+T E++ RAR+ L +++
Sbjct: 364 DKLDVDQEVADILIEEGFNTLEEVAYVPLSEMLEIDSFDEDTVNELRTRARDSLLTMELA 423
Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483
+++I E VS++L S+ G+ +++ L +N + T +DLA +VD+L+ ++
Sbjct: 424 KEERIGE--VSQDLRSLDGMTTELIAKLADNQVHTRDDLAELAVDELVEATQ-------- 473
Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
++ +++I+ AR W
Sbjct: 474 ---------IDEETAKTLIMKAREH--WFT 492
>gi|239815725|ref|YP_002944635.1| NusA antitermination factor [Variovorax paradoxus S110]
gi|239802302|gb|ACS19369.1| NusA antitermination factor [Variovorax paradoxus S110]
Length = 494
Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats.
Identities = 201/514 (39%), Positives = 324/514 (63%), Gaps = 24/514 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + DA++ EK+++RDVV + ++ +A + L+ DIRV ++ ++GD FR
Sbjct: 2 NREMLMLVDAISREKNVERDVVFGAVESALAQATKKLHQGDVDIRVSVDRDSGDYETFRR 61
Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
VV + ++ +I L A++ P I++G + + + + GR+ +AKQVI+QK+
Sbjct: 62 WHVVPDEAGLQLPDQEILLFEAKEEMPDIEVGEYIEEAVDSVPIGRIGAMAAKQVILQKI 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182
R+AER+ +F + +I GTVKR++ G++IV+ G +G +RR E I++ENLR GDRV
Sbjct: 122 RDAEREMLLNDFMSRGDKIFVGTVKRLDKGDIIVEAGRVEGRLRRSEMIAKENLRNGDRV 181
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
++ I +V RG ++LSR+ P+FM++LF EVPEI G++++K+ +RDPGSRAK+AV
Sbjct: 182 RAMIMEVDLTLRGAPIILSRSAPEFMIELFRQEVPEIEQGLLEIKSCARDPGSRAKIAVL 241
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA V+ +V+D
Sbjct: 242 SHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVVD 301
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
E+ ++V+V +E L++AIGR GQNVRLAS LTGW I+I+ E + + + + + F
Sbjct: 302 EEKHAMDVVVDEENLAIAIGRGGQNVRLASDLTGWKINIMDANESAQKQASETDASRKLF 361
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
M+ ++VDE IA +L++EGF +EE+A V ISE+ IE FDE+T E++ RA++ L ++I
Sbjct: 362 MEKLDVDEEIADILISEGFNSLEEVAYVPISEMLEIEAFDEDTINELRSRAKDALLTMEI 421
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482
++ + VS+ L + G+D ++ L E G+ T +DLA +VD+L + +
Sbjct: 422 AKEEGVE--TVSQNLRDLEGLDPELIPKLAEAGVHTRDDLADLAVDELTEITGH------ 473
Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
D +++I+ AR W ++
Sbjct: 474 -----------SADDAKALILKAREH--WFAGQE 494
>gi|94676752|ref|YP_589057.1| transcription termination factor NusA [Baumannia cicadellinicola
str. Hc (Homalodisca coagulata)]
gi|94219902|gb|ABF14061.1| transcription termination factor NusA [Baumannia cicadellinicola
str. Hc (Homalodisca coagulata)]
Length = 495
Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats.
Identities = 191/511 (37%), Positives = 310/511 (60%), Gaps = 19/511 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EKS+ R+ + + ++ A + Y ++R+ I+ ++GD R
Sbjct: 2 NKEILAVVEAVSNEKSVPREKIFEALETALATATKKKYEQEIEVRINIDRKSGDFETLRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+VE+V T +I+L+ A+ +P+ +GG + D + + F R+ Q+AKQVI+QKVR A
Sbjct: 62 WLIVEKVTQPTREITLEAAKFDNPNAQVGGYIEDIIESVTFDRITTQTAKQVIVQKVRAA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F+ G+I+ G VK+V N+ +D+GN+ + +I R++ + REN R GDR++
Sbjct: 122 ERAMIIEQFRKYKGQILIGLVKKVHRDNMSIDIGNNAEAIINREDMLPRENFRIGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y +R E RG Q+ +SRT P+ +V+LF +EVPEI ++++KAV+RDPGSRAK+AV ++
Sbjct: 182 VLYSIRPEVRGTQLFVSRTCPEMLVELFRIEVPEIGEELIEIKAVARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + FVINA+ PA V +++DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPVQFVINAMAPADVASIIVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V + L+ AIGR GQNVRLASQL+GW +++IT E + + + + F +
Sbjct: 302 TQIMDIAVEESNLAQAIGRNGQNVRLASQLSGWELNVITLSEMQEKHRAETSAAIEIFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+N++E +A +L+ G + +EELA V I E+ I+ DE E++ +A++ + + IT+
Sbjct: 362 TLNINEELATILIEGGISSLEELAYVPIKELLVIDKLDENIVEELRKKAKQAITQLTITM 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
Q+ ++L + ++ I L GI T+E+LA +DDLL
Sbjct: 422 QENNLAKKPDQDLLELSKLERHIAFKLAARGICTLENLAEQGIDDLLNIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G +Q +I+ AR K+ W +
Sbjct: 472 -------GLSSEQAGELIMAAR-KICWFGDQ 494
>gi|260221430|emb|CBA29985.1| Transcription elongation protein nusA [Curvibacter putative
symbiont of Hydra magnipapillata]
Length = 498
Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats.
Identities = 198/518 (38%), Positives = 322/518 (62%), Gaps = 24/518 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
ELL + +A++ EK+++RDVVL + ++ +A + LY DIRV ++ ++G+ FR
Sbjct: 2 NRELLMLVEAISREKNVERDVVLGAVEAALAQATKKLYAGDVDIRVALDRDSGNYETFRR 61
Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
VV + ++ +I L A+++ I++ + +P+ + GR+ +AKQVI+QK+
Sbjct: 62 WHVVPDEAGLQLPDQEILLFEAKEQIADIEVDEYIEEPVASVPIGRIGAMAAKQVILQKI 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182
R+AER+ +F + +I GTVKR++ G++IV+ G +G +RR E I +ENLR GDRV
Sbjct: 122 RDAEREMLLNDFMSRGEKIFVGTVKRMDKGDIIVESGRVEGRLRRGEMIPKENLRTGDRV 181
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
++ I +V RG ++LSR+ P+FM++LF EVPEI G++++K+ +RD GSRAK+AV
Sbjct: 182 RAMIMEVDLTLRGAPIVLSRSAPEFMIELFRQEVPEIEQGLLEIKSCARDAGSRAKIAVL 241
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
S D +DP+G CVG+RG+RV V EL E++DIV+WS D A FVI AL PA VT +V+D
Sbjct: 242 SHDKRVDPIGTCVGVRGTRVNGVTNELAGERVDIVLWSEDPAQFVIGALAPANVTSIVVD 301
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
E+ ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+ E + + + + F
Sbjct: 302 EERHAMDVVVDEENLAIAIGRGGQNVRLASELTGWKINIMDAAESAQKLANETDSGRKLF 361
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
M+ ++VDE IA +L+AEGF +EE+A V + E+ IE FDE+T E++ RA++ L ++I
Sbjct: 362 MEKLDVDEEIADILIAEGFTSLEEVAYVPLQEMLEIESFDEDTVHELRNRAKDALLTMEI 421
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482
++ + E VS+ L + G+ ++ L + G+ T ++LA +VD+L +
Sbjct: 422 AHEESVEE--VSQNLRDLEGLTPELIGKLADGGVHTRDELADLAVDELTDITGQ------ 473
Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADE 520
D+ +++I+ AR W + + E
Sbjct: 474 -----------SADEAKALIMKAREH--WFTNDGASQE 498
>gi|312963084|ref|ZP_07777569.1| N utilization substance protein A [Pseudomonas fluorescens WH6]
gi|311282595|gb|EFQ61191.1| N utilization substance protein A [Pseudomonas fluorescens WH6]
Length = 493
Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats.
Identities = 208/509 (40%), Positives = 317/509 (62%), Gaps = 22/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + ++V+ EK + V+ + ++ A + + D+RVEIN TG FR
Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVDLRVEINRHTGAYETFRRWT 63
Query: 68 VVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVE ++++ + P +G VV + + ++FGR+A Q+AKQVI+QKVREA
Sbjct: 64 VVEEDDLDDPAIETWPSKVAQTHPGAQVGDVVEEKIESIEFGRIAAQTAKQVIVQKVREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER + +++++GEIISGTVK+V NVIVDLGN+ + ++ R++ ISRE R G R+++
Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRLRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S
Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED
Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F++
Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFIE 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+ VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I
Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPVEEMLNIDGFDEDIVNELRARAKDRLLTKAIAT 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +E+L S+ G+D + + L G+ T EDLA S
Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQS-----------------I 466
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513
D L G D+ +I+ AR W E
Sbjct: 467 DDLLDIDGIDDDRAGKLIMAARAH--WFE 493
>gi|33152524|ref|NP_873877.1| transcription elongation factor NusA [Haemophilus ducreyi 35000HP]
gi|33148747|gb|AAP96266.1| transcription termination-antitermination factor nusA, N
utilization substance protein A [Haemophilus ducreyi
35000HP]
Length = 493
Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats.
Identities = 194/508 (38%), Positives = 318/508 (62%), Gaps = 20/508 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L A+AV+ EK + ++ + + ++ + + G DIRV IN +TG+ FR
Sbjct: 4 EILLAAEAVSNEKLLPKEAIFEALETALAISTKKKKGIDIDIRVVINRKTGEFQTFRRWL 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
+VE+V N T +ISL A+ DP++ +G V D + + F R+ +Q+A+QVI K+REAER
Sbjct: 64 IVEQVHNMTREISLAAAQYEDPNVQLGDFVEDEIESIPFDRITMQTARQVISTKIREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186
++ +F+ ++ I++ TVK+V +I+DLGN ++ VI R++ + REN RPGDR++ +
Sbjct: 124 NKVIEQFRTQLNCIVTATVKKVNREQIILDLGNQAEAVIIREDMLPRENFRPGDRIRGVL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
Y ++ E +GPQ+ ++R P + LF +EVPEI ++++K SRD GSR+K+AV S+D
Sbjct: 184 YAIKPESKGPQLFVTRAKPVMLEVLFKLEVPEIGEEVIEIKGASRDAGSRSKIAVKSNDK 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+DED
Sbjct: 244 RIDPVGACVGMRGARVQAISNELGGERVDIVLWDDNPAQFVINAMSPAEVSHIVVDEDKH 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+++ V + L+ AIGR GQNVRLA+QLTGW+++++T E+ + Q + N+ F+ ++
Sbjct: 304 AMDIAVETKNLAQAIGRNGQNVRLATQLTGWSLNVMTTEDLNEKHQAEDNKIIDLFVTSL 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE-TAVEIQGRAREYLEGIDITLQ 425
+DE AHLLV EGF+ +EE+A + ++E+ I+G D+E A E+Q RA+ + + +
Sbjct: 364 QIDEEFAHLLVDEGFSSLEEIAFIAVNELVDIDGIDDENLAEELQTRAKAAITEKALAEE 423
Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485
+ ++ + + L ++ G++ I L E GI T+E+LA +DDL E
Sbjct: 424 EALKRADIEDRLLNLDGLERHIAFKLAEKGIVTLEELAEQGIDDLADIQE---------- 473
Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIE 513
++ +I++AR ++ W
Sbjct: 474 -------LSAEKAGELIMNAR-QICWFS 493
>gi|330807482|ref|YP_004351944.1| transcription elongation factor [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327375590|gb|AEA66940.1| Putative transcription elongation factor [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 493
Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats.
Identities = 209/509 (41%), Positives = 318/509 (62%), Gaps = 22/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + ++V+ EK + +V+ + ++ A + + D+RVEIN TG FR
Sbjct: 4 EVLLVVESVSNEKGVPANVIFEALELALATATKKRFEDEVDLRVEINRHTGAYETFRRWT 63
Query: 68 VVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVE ++++ + + P +G VV + + ++FGR+A Q+AKQVI+QKVREA
Sbjct: 64 VVEEADLDDPAIETWPSKVAETHPGAKVGDVVEEKIESIEFGRIAAQTAKQVIVQKVREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER + +++++GEIISGTVK+V NVIVDLGN+ + ++ R++ ISRE R G R+++
Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRLRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S
Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED
Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F+
Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFID 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+ VDE +A +LV EGF +EE+A V + E+ +I+GFDEE E++ RA++ L I
Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPVEEMLNIDGFDEEIVNELRARAKDRLLTKAIAT 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +E+L S+ G+D + + L G+ T EDLA S
Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQS-----------------I 466
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513
D L G D+ +I+ AR W E
Sbjct: 467 DDLLDIDGIDDDRAGKLIMAARAH--WFE 493
>gi|320322529|gb|EFW78622.1| transcription elongation factor NusA [Pseudomonas syringae pv.
glycinea str. B076]
Length = 493
Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats.
Identities = 208/509 (40%), Positives = 324/509 (63%), Gaps = 22/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR
Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRRWT 63
Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVREA
Sbjct: 64 VVEDEDLDDPAYELAVDQAQVKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER + +++++GEIISGTVK+V NVIVDLGN+ + ++ R++ ISRE R G RV++
Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRIGVRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S
Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED
Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F++
Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFIE 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+ VDE +A +LV EGF +EE+A V + E+ +I+GFDEE E++ RA++ L I
Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEEIVNELRARAKDRLLTKAIAT 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +E+L S+ G+D + + L G+ T EDLA S
Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQS-----------------I 466
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513
D L G D+ +I+ AR W E
Sbjct: 467 DDLLDIDGIDDDRAGKLIMAARAH--WFE 493
>gi|320330002|gb|EFW85989.1| transcription elongation factor NusA [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330875221|gb|EGH09370.1| transcription elongation factor NusA [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 493
Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats.
Identities = 208/509 (40%), Positives = 324/509 (63%), Gaps = 22/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR
Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRRWT 63
Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVREA
Sbjct: 64 VVEDEDLDDPAYELAVDQAQVKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER + +++++GEIISGTVK+V NVIVDLGN+ + ++ R++ ISRE R G RV++
Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRIGVRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S
Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED
Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F++
Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFIE 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+ VDE +A +LV EGF +EE+A V + E+ +I+GFDEE E++ RA++ L I
Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEEIVNELRARAKDRLLTKAIAT 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +E+L S+ G+D + + L G+ T EDLA S
Sbjct: 424 EEKLADAHPAEDLLSLGGMDKDLAMELAVRGVITREDLAEQS-----------------I 466
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513
D L G D+ +I+ AR W E
Sbjct: 467 DDLLDIDGIDDDRAGKLIMAARAH--WFE 493
>gi|121594900|ref|YP_986796.1| NusA antitermination factor [Acidovorax sp. JS42]
gi|120606980|gb|ABM42720.1| NusA antitermination factor [Acidovorax sp. JS42]
Length = 494
Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats.
Identities = 201/514 (39%), Positives = 322/514 (62%), Gaps = 24/514 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
ELL + +A++ EK+++RDVVL + ++ +A + LY DIRV I ++G+ FR
Sbjct: 2 NRELLMLVEAISREKNVERDVVLGAVESALAQATKKLYQGEVDIRVSIERDSGEYETFRR 61
Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
VV + ++N + L AR+R I++G + + + + GR+ +AKQVI+QK+
Sbjct: 62 WLVVPDDAGLQNPDAEELLMDARERVADIEVGEYIEEAVESVPIGRIGAMAAKQVILQKI 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182
R+AER+ +F + +I +GTVKR++ G++IV+ G +G +RR E I +ENLR GDRV
Sbjct: 122 RDAEREMLLNDFMSRGEKIFTGTVKRMDKGDIIVESGRVEGRLRRGEMIPKENLRNGDRV 181
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
++ I +V RG ++LSR+ P+FM++LF EVPEI G++++K+ +RDPGSRAK+AV
Sbjct: 182 RAMIMEVDLTLRGAPIILSRSAPEFMIELFRNEVPEIEQGLLEIKSCARDPGSRAKIAVL 241
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA VT +V+D
Sbjct: 242 SHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSDDPAQFVIGALAPANVTSIVVD 301
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
E+ ++V+V +E L++AIGR GQNVRLAS LTGW I+I+ E + + + + + F
Sbjct: 302 EEKHAMDVVVDEENLAIAIGRGGQNVRLASDLTGWKINIMDAAESAQKQANETDAARRLF 361
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
M+ ++VDE IA++L+ EGFA +EE+A V + E+ IE FDE+T E++ RA++ L ++I
Sbjct: 362 MEKLDVDEEIANILIEEGFASLEEVAYVPLQEMLEIESFDEDTVNELRARAKDALLTMEI 421
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482
++ + VS++L + G+ ++ L E G+ T +DLA ++D+L +
Sbjct: 422 VREESVE--SVSQDLRDLEGLTPELIAKLAEGGVHTRDDLADLAIDELTELTGQ------ 473
Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
+ ++I+ AR W ++
Sbjct: 474 -----------SAEDATALIMKAREH--WFTGQE 494
>gi|124267111|ref|YP_001021115.1| NusA antitermination factor [Methylibium petroleiphilum PM1]
gi|124259886|gb|ABM94880.1| NusA antitermination factor [Methylibium petroleiphilum PM1]
Length = 492
Score = 451 bits (1161), Expect = e-124, Method: Composition-based stats.
Identities = 210/511 (41%), Positives = 327/511 (63%), Gaps = 24/511 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+LL DA+A EKS++RDVV + ++ A++ L+G DIRV ++ +TG+ FR
Sbjct: 2 NRDLLDFVDAIAREKSVERDVVFEAVEAALASASKKLHGGEVDIRVSVDRDTGEYETFRR 61
Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
VV + ++N + L ARDR I+ G + + + + GR+ Q+AKQVI+QKV
Sbjct: 62 WLVVPDSAGLQNADAEELLTDARDRIEDIEEGDYIEEAIESVSIGRIGAQAAKQVILQKV 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182
R+AER++ +F + +I GTVKR++ G+++V+ G +G ++R E I++ENLR GDRV
Sbjct: 122 RDAEREQLLNDFLSRGDKIFVGTVKRLDKGDLVVESGRVEGRLKRSELIAKENLRTGDRV 181
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
++YI +V QRGPQ++LSR+ P FMV+LF EVPEI G++++K+ +RD GSRAK+AV
Sbjct: 182 RAYITEVDTTQRGPQIMLSRSAPGFMVELFRHEVPEIEQGLLEIKSCARDAGSRAKIAVL 241
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
S D +DP+G CVG+RGSRV AV EL E++DIV+WS D A FVI AL PA V +V+D
Sbjct: 242 SHDKRVDPIGTCVGVRGSRVNAVTNELAGERVDIVLWSADPAQFVIGALAPANVQSIVVD 301
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
E+ ++V+V +E L++AIGR GQNVRLAS+LTGW I+I++ EE + + + F
Sbjct: 302 EEKHAMDVVVDEENLAIAIGRGGQNVRLASELTGWRINIMSAEESQDKQATESESIRKLF 361
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
++ ++VD +A +L+AEGF +EE+A V + E+ +E FDE+T E++ RA++ L ++I
Sbjct: 362 VEKLDVDAEVADILIAEGFTSLEEVAYVPLQEMLEMESFDEDTVHELRTRAKDALLTMEI 421
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482
++K+ VS++L + G+D+++ L E GI T +DLA +VD+L +
Sbjct: 422 AQEEKLE--SVSQDLRDLEGLDAELIARLAEGGIHTRDDLADLAVDELTELT-------- 471
Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
G +Q +++I+ AR W
Sbjct: 472 ---------GVADEQAKALIMKAREH--WFT 491
>gi|237798562|ref|ZP_04587023.1| transcription elongation factor NusA [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331021415|gb|EGI01472.1| transcription elongation factor NusA [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 493
Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats.
Identities = 207/509 (40%), Positives = 324/509 (63%), Gaps = 22/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR
Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRRWT 63
Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVREA
Sbjct: 64 VVEDEDLDDPAYELAVDQAQAKRPGAVAGELIEEKIDSIEFGRIAAQTAKQVIVQKVREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER + +++++GEIISGTVK+V NVIVDLGN+ + ++ R++ ISRE R G RV++
Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S
Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED
Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F++
Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFIE 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+ VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I
Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAIAT 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +E+L S+ G+D + + L G+ T EDLA S
Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQS-----------------I 466
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513
D L G D+ +I+ AR W E
Sbjct: 467 DDLLDIDGIDDDRAGKLIMAARAH--WFE 493
>gi|330895306|gb|EGH27644.1| transcription elongation factor NusA [Pseudomonas syringae pv.
japonica str. M301072PT]
Length = 493
Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats.
Identities = 206/509 (40%), Positives = 323/509 (63%), Gaps = 22/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR
Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRRWT 63
Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVREA
Sbjct: 64 VVEDEDLDDPAYELAVDQAQAKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER + +++++GEIISGTVK+V NVIVDLGN+ + ++ R++ ISRE R G RV++
Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S
Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED
Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V + L+ A GR GQNVRLASQLTGWT++++TE + +Q + + + F++
Sbjct: 304 AHAMDIAVGADNLAQASGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFIE 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+ VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I
Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAIAT 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +E+L S+ G+D + + L G+ T EDLA S
Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQS-----------------I 466
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513
D L G D+ +I+ AR W E
Sbjct: 467 DDLLDIDGIDDDRAGKLIMAARAH--WFE 493
>gi|90416134|ref|ZP_01224066.1| transcription elongation factor NusA [marine gamma proteobacterium
HTCC2207]
gi|90331859|gb|EAS47073.1| transcription elongation factor NusA [marine gamma proteobacterium
HTCC2207]
Length = 497
Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats.
Identities = 203/511 (39%), Positives = 325/511 (63%), Gaps = 22/511 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L +A+AV+ EK +D++V+ + ++ A + Y ++IRV I+ ETGD FR +
Sbjct: 4 EILMVAEAVSNEKGVDQEVIFQAIEQALSTATKKRYDEGANIRVVIDRETGDYDSFRWWD 63
Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV + + Q + + A ++DP++ +G + + + FGR+A Q+AKQVI+QKVREA
Sbjct: 64 VVADDVMAELGTQFTTEEAHEKDPTLAVGDTFEETVENIAFGRIAAQTAKQVIVQKVREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER+ F +++GE+++GTVK+V ++IVD G++ +G++ R+E + RE R DR +
Sbjct: 124 ERELIISRFVNRIGEMLNGTVKKVTRDHIIVDFGDNAEGLLPREELVGREIFRINDRTRV 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ +R + RGPQ+L+SR + +V+LFH+EVPEI GI+++K +RDPG RAK+AV S
Sbjct: 184 ILTSIRDDTRGPQLLVSRAASEMLVQLFHIEVPEISEGIIEIKGAARDPGQRAKIAVKSK 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D+ IDPVGACVGMRG+RVQAV +L DE+IDI++W + A VINA+ PA V +V+DED
Sbjct: 244 DARIDPVGACVGMRGARVQAVSNDLDDERIDIILWDDNPAQLVINAMAPAEVESIVVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V V +E L+ AIG+ GQNVRLAS+LTGWTI+++T ++ +Q++ + M
Sbjct: 304 SHSMDVAVSEENLAQAIGKGGQNVRLASELTGWTINVMTMDQAQEKQQEESLNVVENLMT 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
A+++DE +A +LV EGF +EE+A V + E+ IEGFDE A E++ RA++ L + +
Sbjct: 364 ALDIDEDVAIVLVEEGFTSLEEVAYVPLEEMIDIEGFDEGIATELRARAKDALLTMALAS 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++++ +E+L ++ G++ + L GI TMEDLA +VDDL+
Sbjct: 424 EEQLANAQPAEDLLTMDGMNDALANTLAGKGIITMEDLAEQAVDDLMEVD---------- 473
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ ++I+ AR W +
Sbjct: 474 -------GMDEETAAALIMTARAP--WFVDQ 495
>gi|332528893|ref|ZP_08404863.1| NusA antitermination factor [Hylemonella gracilis ATCC 19624]
gi|332041650|gb|EGI78006.1| NusA antitermination factor [Hylemonella gracilis ATCC 19624]
Length = 511
Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats.
Identities = 198/528 (37%), Positives = 325/528 (61%), Gaps = 28/528 (5%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
M S ELL + +A++ EK+++RDVV + ++ +A + LY DIRV ++ +TG
Sbjct: 1 MSSIKNSELLMLVEAISREKNVERDVVFGAVEAALAQATKKLYEGDVDIRVAVDRDTGLY 60
Query: 61 SLFRLLEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117
FR VV + ++ +I L A+++ P I++ + + + + GR+ +AKQV
Sbjct: 61 ETFRRWHVVPDEAGLQLPDQEILLFEAKEQIPDIEVDEYIEEAVESVPIGRIGAMAAKQV 120
Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR 177
I+QK+R+AER+ +F + +I G+VKR++ G++IV+ G +G ++R+E I +EN R
Sbjct: 121 ILQKIRDAEREMLLNDFMSRGEKIFVGSVKRMDKGDLIVESGRVEGRLKRNEMIPKENFR 180
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
GDRV++ I +V EQRGP +LLSR+ P+FM++LF EVPEI G++++K+ +RD GSRA
Sbjct: 181 AGDRVRAMIMEVNTEQRGPAILLSRSAPEFMIELFRQEVPEIEQGLLEIKSCARDAGSRA 240
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA V+
Sbjct: 241 KIAVLSHDKRVDPIGTCVGVRGARVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVS 300
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
+V+DE+ ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+ E + + +
Sbjct: 301 SIVVDEEKHAMDVVVDEENLAIAIGRGGQNVRLASELTGWKINIMDAAESAQKQADETTT 360
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
+ FM+ ++VDE IA +L+ EGF +EE+A V + E+ IE FDE+T E++ RA++ L
Sbjct: 361 LRKLFMEKLDVDEEIADILITEGFTSLEEVAYVPLQEMLEIESFDEDTVNELRARAKDAL 420
Query: 418 EGIDITLQKKIRELGVSEELCSI----PGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473
++I ++ + E VS++L + + + + L + G+ T++DLA ++D+L
Sbjct: 421 LTLEIAREESVDE--VSQDLRDLQFQGKPLSADVIAKLADGGVHTLDDLADLAIDELTVI 478
Query: 474 SENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEE 521
+ + ++ +++I+ AR W E
Sbjct: 479 TGH-----------------SEEDAKALILKAREH--WFTDEPATAAS 507
>gi|330963974|gb|EGH64234.1| transcription elongation factor NusA [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 493
Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats.
Identities = 207/509 (40%), Positives = 324/509 (63%), Gaps = 22/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR
Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRRWT 63
Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVREA
Sbjct: 64 VVEDEDLDDPAYELAVDQAQAKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER + +++++GEIISGTVK+V NVIVDLGN+ + ++ R++ ISRE R G RV++
Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S
Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED
Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELVGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F++
Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFIE 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+ VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I
Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAIAT 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +E+L S+ G+D + + L G+ T EDLA S
Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVVTREDLAEQS-----------------I 466
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513
D L G D+ +I+ AR W E
Sbjct: 467 DDLLDIDGIDDDRAGKLIMAARAH--WFE 493
>gi|121609702|ref|YP_997509.1| NusA antitermination factor [Verminephrobacter eiseniae EF01-2]
gi|121554342|gb|ABM58491.1| NusA antitermination factor [Verminephrobacter eiseniae EF01-2]
Length = 494
Score = 450 bits (1159), Expect = e-124, Method: Composition-based stats.
Identities = 198/510 (38%), Positives = 323/510 (63%), Gaps = 24/510 (4%)
Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66
LELL + DA++ EK+++RDVVL + ++ +A + LY DIRV ++ ++G FR
Sbjct: 3 LELLMLIDAISREKNVERDVVLDAVESALAQATKKLYQGEVDIRVAVDRKSGGHETFRRW 62
Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
VV + ++N + L A++R I++G + + + + GR+ +AKQVI+QK+R
Sbjct: 63 LVVPDEAGLQNPDAEELLMDAKERIADIEVGEYIEETVDSVPIGRIGAMAAKQVILQKIR 122
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183
+AER+ +F + +I +GTVKR++ G++IV+ G +G +RR E I +ENLR GDRV+
Sbjct: 123 DAEREMLLNDFMSRGEKIFTGTVKRMDKGDIIVESGRVEGRLRRSELIPKENLRSGDRVR 182
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+ I +V RG ++LSR+ P+FM++LF EVPEI ++++K+ +RDPGSRAK+AV S
Sbjct: 183 AMIMEVDLSLRGAPIILSRSAPEFMIELFRQEVPEIEQSLLEIKSCARDPGSRAKIAVLS 242
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA V+ +V+DE
Sbjct: 243 HDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVVDE 302
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
+ ++V+V +E L++AIGR GQNVRLA+ LTGW I+I+ E + + K+ + + FM
Sbjct: 303 EKHAMDVVVDEENLAIAIGRGGQNVRLAADLTGWKINIMDAAESAQKQAKESDTARRLFM 362
Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423
+ ++VDE IA +L+AEGF +EE+A V + E+ I+ FDE+T E++ RA++ L ++I
Sbjct: 363 EKLDVDEEIADILIAEGFNSLEEVAYVPLQEMLEIDSFDEDTVNELRARAKDALLTMEIA 422
Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483
++ + E VS++L + G+ + L + G+ T +DLA ++D+L +
Sbjct: 423 REESVEE--VSQDLRDLGGLSPALIAQLAKGGVHTRDDLADLAIDELTDLTGQ------- 473
Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
+++ +++I+ AR W
Sbjct: 474 ----------SEEEAKALIMKAREH--WFA 491
>gi|88797622|ref|ZP_01113211.1| N utilization substance protein A [Reinekea sp. MED297]
gi|88779794|gb|EAR10980.1| N utilization substance protein A [Reinekea sp. MED297]
Length = 503
Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats.
Identities = 200/513 (38%), Positives = 322/513 (62%), Gaps = 24/513 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM--SDIRVEINPETGDISLFRL 65
E+L + DAVA EK + RDV+ M ++ AA+ D+ V I+ +TG+ FR
Sbjct: 10 EILLVVDAVANEKGVSRDVIFDAMELALATAAKKRLDDEGEPDVYVVIDRKTGEYETFRR 69
Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
EV+ + V Q + + A + D ++ G V + FGR++ Q+AKQ+I+QKVR
Sbjct: 70 WEVMGDDVVPELGSQWTTEEAHEVDTNLKPGDVYEVQIENEGFGRISAQAAKQIIVQKVR 129
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182
+AER R ++++VGE+++GTVK+V +I+DLGN+ + V+ RD+ I RE R DRV
Sbjct: 130 DAERARIVDNYRERVGEMVTGTVKKVTRDALIIDLGNNAEAVLPRDQMIGREAFRLADRV 189
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
++ + +++ E RGPQ++LSRT + +V+LF +EVPEI ++++++ +RDPGSRAK+AV
Sbjct: 190 RAVLQEIKSEGRGPQLVLSRTSNEMLVELFRIEVPEIQEELIEIRSCARDPGSRAKIAVK 249
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
++D IDPVGACVGMRGSRVQAV EL +E++DI++W + A VINA+ PA V +V+D
Sbjct: 250 TNDGRIDPVGACVGMRGSRVQAVSNELGNERVDIILWDDNPAQLVINAMAPAEVASIVMD 309
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
ED +EV V ++ L++AIGR GQNVRLA+ LTGW I+++TE+E ++++ + F
Sbjct: 310 EDTNTMEVAVAEDNLAIAIGRNGQNVRLAADLTGWIINVMTEDEAGARQEQEAGQLVSHF 369
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
++ + VD+ +A +LV EGF +EE+A V I+E+ I+GF+E+ E++ RA++ L ++
Sbjct: 370 VEKLGVDDELAMILVEEGFTTLEEVAYVPINEMLDIDGFEEDLVNELRQRAKDELLTQEL 429
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482
++++ E+L + G+ + L NG+ +MED+A S+D+L+ +S
Sbjct: 430 ATEERLDSAEPQEDLLGLDGMTDHLARVLASNGVVSMEDVAELSIDELMEFS-------- 481
Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G +D +I+ AR W E E
Sbjct: 482 ---------GLDEDASGKLIMAARAP--WFENE 503
>gi|254482493|ref|ZP_05095732.1| NusA N-terminal domain family [marine gamma proteobacterium
HTCC2148]
gi|214037184|gb|EEB77852.1| NusA N-terminal domain family [marine gamma proteobacterium
HTCC2148]
Length = 497
Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats.
Identities = 203/513 (39%), Positives = 321/513 (62%), Gaps = 22/513 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L +A+AV+ EK + ++ + ++ A + Y SDI V I+ TGD R
Sbjct: 4 EILLVAEAVSNEKGVAESIIFEAIELALATATKKRYDEESDIEVTIDRSTGDYVTKRRWL 63
Query: 68 VVEEVEN--YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV + E Q + + A ++D S+ G + + + + FGR+A Q+AKQVI+Q+VR+A
Sbjct: 64 VVPDDELALLGTQFTTEEAAEQDTSLQPGDIYEEVIDNVGFGRIAAQTAKQVIVQRVRDA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER++ ++ +VGE+++GTVK+V NVIVDLGN+ +G++ R E + RE R DRV++
Sbjct: 124 EREQVVEQYMGRVGELVAGTVKKVTRDNVIVDLGNNAEGLLPRSELVGRETFRVNDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ ++ E RGPQ++LSR P+ +++LF +EVPEI ++Q++A +RDPGSRAK+AV ++
Sbjct: 184 ILKEISTEARGPQLILSRACPEMLIELFKIEVPEISEEVIQIRAAARDPGSRAKIAVKTN 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRGSRVQAV EL +E++DIV+W + A VINA+ PA V +V+DED
Sbjct: 244 DQRIDPVGACVGMRGSRVQAVSNELDNERVDIVLWDDNPAQLVINAMAPAEVESIVVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
G ++V V +E L+ AIGR GQNVRLA++LT WTI++++ EE + + + E F +
Sbjct: 304 SGTMDVAVSEENLAQAIGRSGQNVRLAAELTEWTINVMSLEEAADKHEAEAGEVIGVFCK 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
A++VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ A E++ RA++ L I
Sbjct: 364 ALDVDEDVAEILVEEGFTTLEEVAYVPLEEMTAIDGFDEDIAEELRARAKDALLTQAIAS 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++++ +E+L ++ G+D + L I TMEDLA +V+DL+
Sbjct: 424 EEQLGANEPAEDLLTMEGMDRHLAYILSSREIVTMEDLAEQAVEDLMDIE---------- 473
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517
+++ +I+ AR W + +
Sbjct: 474 -------DMTEERAGELIMTARAP--WFAEAEE 497
>gi|78066110|ref|YP_368879.1| transcription elongation factor NusA [Burkholderia sp. 383]
gi|77966855|gb|ABB08235.1| NusA antitermination factor [Burkholderia sp. 383]
Length = 491
Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats.
Identities = 215/508 (42%), Positives = 338/508 (66%), Gaps = 24/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR
Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ +I L ARD++P +++G V +P+P ++FGR+ Q+AKQVI+QKVR+
Sbjct: 64 VVPDEAGLQEPDREILLFEARDQNPDVEVGEYVEEPVPSIEFGRIGAQAAKQVILQKVRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++
Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V +
Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVIAY 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+
Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V + +L++AIGR GQNVRLA +LTGW I+I+T +E ++ + ++ + FM
Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLAGELTGWQINIMTPDESALKQGEERDRLRALFMA 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I
Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +L S+ GI ++ L E+G++T +DLA +VD+L+ +
Sbjct: 424 EEKVENAAL--DLKSLDGITPELLAKLAEHGVQTRDDLAELAVDELVDLT---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512
G +D +++I+ AR W
Sbjct: 472 -------GMEEDAAKALIMKAREH--WF 490
>gi|254252537|ref|ZP_04945855.1| Transcription elongation factor [Burkholderia dolosa AUO158]
gi|124895146|gb|EAY69026.1| Transcription elongation factor [Burkholderia dolosa AUO158]
Length = 491
Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats.
Identities = 213/508 (41%), Positives = 338/508 (66%), Gaps = 24/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR
Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ +I L AR++ P +++G + +P+P ++FGR+ Q+AKQVI+QKVR+
Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPDVEVGEYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++
Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V +
Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVIAY 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+
Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E ++ + ++ + FM
Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESALKQGEERDRLRTLFMT 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I
Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +L S+ G+ ++ L E+G++T +DLA +VD+L+ +
Sbjct: 424 EEKVENAAL--DLKSLDGVTPELLAKLAEHGVQTRDDLAELAVDELVDMT---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512
G +D +++I+ AR W
Sbjct: 472 -------GMEEDAAKALIMKAREH--WF 490
>gi|161524929|ref|YP_001579941.1| transcription elongation factor NusA [Burkholderia multivorans ATCC
17616]
gi|189350321|ref|YP_001945949.1| transcription elongation factor NusA [Burkholderia multivorans ATCC
17616]
gi|221197756|ref|ZP_03570802.1| transcription termination factor NusA [Burkholderia multivorans
CGD2M]
gi|221204686|ref|ZP_03577703.1| transcription termination factor NusA [Burkholderia multivorans
CGD2]
gi|160342358|gb|ABX15444.1| NusA antitermination factor [Burkholderia multivorans ATCC 17616]
gi|189334343|dbj|BAG43413.1| N utilization substance protein A [Burkholderia multivorans ATCC
17616]
gi|221175543|gb|EEE07973.1| transcription termination factor NusA [Burkholderia multivorans
CGD2]
gi|221181688|gb|EEE14089.1| transcription termination factor NusA [Burkholderia multivorans
CGD2M]
Length = 491
Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats.
Identities = 213/508 (41%), Positives = 336/508 (66%), Gaps = 24/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR
Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ +I L AR++ P +++G + +P+P ++FGR+ Q+AKQVI+QKVR+
Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPDVEVGEYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++
Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V +
Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+
Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ + FM
Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQGEERDRLRALFMT 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I
Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +L S+ G+ ++ L E+G+ T +DLA +VD+L+ +
Sbjct: 424 EEKVENAAL--DLKSLDGVTPELLAKLAEHGVATRDDLAELAVDELVDMT---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512
G +D +++I+ AR W
Sbjct: 472 -------GMEEDAAKALIMKAREH--WF 490
>gi|221214880|ref|ZP_03587848.1| transcription termination factor NusA [Burkholderia multivorans
CGD1]
gi|221165107|gb|EED97585.1| transcription termination factor NusA [Burkholderia multivorans
CGD1]
Length = 491
Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats.
Identities = 213/508 (41%), Positives = 336/508 (66%), Gaps = 24/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR
Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ +I L AR++ P +++G + +P+P ++FGR+ Q+AKQVI+QKVR+
Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPDVEVGEYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++
Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V +
Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVIAY 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+
Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ + FM
Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQGEERDRLRALFMT 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I
Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +L S+ G+ ++ L E+G+ T +DLA +VD+L+ +
Sbjct: 424 EEKVENAAL--DLKSLDGVTPELLAKLAEHGVATRDDLAELAVDELVDMT---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512
G +D +++I+ AR W
Sbjct: 472 -------GMEEDAAKALIMKAREH--WF 490
>gi|107022573|ref|YP_620900.1| transcription elongation factor NusA [Burkholderia cenocepacia AU
1054]
gi|116689521|ref|YP_835144.1| transcription elongation factor NusA [Burkholderia cenocepacia
HI2424]
gi|254245586|ref|ZP_04938907.1| Transcription elongation factor [Burkholderia cenocepacia PC184]
gi|105892762|gb|ABF75927.1| NusA antitermination factor [Burkholderia cenocepacia AU 1054]
gi|116647610|gb|ABK08251.1| NusA antitermination factor [Burkholderia cenocepacia HI2424]
gi|124870362|gb|EAY62078.1| Transcription elongation factor [Burkholderia cenocepacia PC184]
Length = 491
Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats.
Identities = 214/508 (42%), Positives = 337/508 (66%), Gaps = 24/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR
Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ +I L AR++ P +++G V +P+P ++FGR+ Q+AKQVI+QKVR+
Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPDVEVGEYVEEPVPSIEFGRIGAQAAKQVILQKVRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++
Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V +
Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVIAY 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+
Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V + +L++AIGR GQNVRLA +LTGW I+I+T +E ++ + ++ + FM
Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLAGELTGWQINIMTPDESALKQGEERDRLRALFMA 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I
Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +L S+ GI ++ L E+G++T +DLA +VD+L+ +
Sbjct: 424 EEKVENAAL--DLKSLDGITPELLAKLAEHGVQTRDDLAELAVDELVDMT---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512
G +D +++I+ AR W
Sbjct: 472 -------GMEEDAAKALIMKAREH--WF 490
>gi|319793511|ref|YP_004155151.1| nusa antitermination factor [Variovorax paradoxus EPS]
gi|315595974|gb|ADU37040.1| NusA antitermination factor [Variovorax paradoxus EPS]
Length = 497
Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats.
Identities = 201/515 (39%), Positives = 324/515 (62%), Gaps = 23/515 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + DA++ EK+++RDVV + ++ +A + L+ DIRV ++ ++GD FR
Sbjct: 2 NREMLMLVDAISREKNVERDVVFGAVESALAQATKKLHQGDVDIRVAVDRDSGDYETFRR 61
Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
VV + ++ +I L A++ I++G + + + + GR+ +AKQVI+QK+
Sbjct: 62 WHVVPDEAGLQLPDQEILLFEAKEEMSDIEVGEYIEEAVDSVPIGRIGAMAAKQVILQKI 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182
R+AER+ +F + +I GTVKR++ G++IV+ G +G +RR E I++ENLR GDRV
Sbjct: 122 RDAEREMLLNDFMSRGDKIFVGTVKRLDKGDIIVEAGRVEGRLRRSEMIAKENLRNGDRV 181
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
++ I +V RG ++LSR+ P+FM++LF EVPEI G++++K+ +RDPGSRAK+AV
Sbjct: 182 RAMIMEVDLTLRGAPIILSRSAPEFMIELFRQEVPEIEQGLLEIKSCARDPGSRAKIAVL 241
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA V+ +V+D
Sbjct: 242 SHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVVD 301
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
E+ ++V+V +E L++AIGR GQNVRLAS LTGW I+I+ E + + + + + F
Sbjct: 302 EEKHAMDVVVDEENLAIAIGRGGQNVRLASDLTGWKINIMDANESAQKQATETDASRKLF 361
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
M+ ++VDE IA +L+AEGF +EE+A V ISE+ IE FDE+T E++ RA++ L ++I
Sbjct: 362 MEKLDVDEEIADILIAEGFNSLEEVAYVPISEMLEIEAFDEDTINELRSRAKDALLTMEI 421
Query: 423 TLQKKIR-ELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
++ + + VS+ L + G+D ++ L E G+ T +DLA +VD+L + +
Sbjct: 422 AKEEGVETQSSVSQNLRDLEGLDPELIPKLAEAGVNTRDDLADLAVDELTEITGH----- 476
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
D +++I+ AR W ++
Sbjct: 477 ------------SADDAKALILKAREH--WFAGQE 497
>gi|170732825|ref|YP_001764772.1| transcription elongation factor NusA [Burkholderia cenocepacia
MC0-3]
gi|169816067|gb|ACA90650.1| NusA antitermination factor [Burkholderia cenocepacia MC0-3]
Length = 491
Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats.
Identities = 214/508 (42%), Positives = 337/508 (66%), Gaps = 24/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR
Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ +I L AR++ P +++G V +P+P ++FGR+ Q+AKQVI+QKVR+
Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPGVEVGEYVEEPVPSIEFGRIGAQAAKQVILQKVRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++
Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V +
Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVIAY 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+
Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V + +L++AIGR GQNVRLA +LTGW I+I+T +E ++ + ++ + FM
Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLAGELTGWQINIMTPDESALKQGEERDRLRALFMA 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I
Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +L S+ GI ++ L E+G++T +DLA +VD+L+ +
Sbjct: 424 EEKVENAAL--DLKSLDGITPELLAKLAEHGVQTRDDLAELAVDELVDMT---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512
G +D +++I+ AR W
Sbjct: 472 -------GMEEDAAKALIMKAREH--WF 490
>gi|82702986|ref|YP_412552.1| transcription elongation factor NusA [Nitrosospira multiformis ATCC
25196]
gi|82411051|gb|ABB75160.1| NusA antitermination factor [Nitrosospira multiformis ATCC 25196]
Length = 495
Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats.
Identities = 209/513 (40%), Positives = 331/513 (64%), Gaps = 23/513 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++++++V + + ++ A + + +D+RV I+ +TGD R +
Sbjct: 4 EVLLLVDALAREKNVEKNIVFAALELALASATKKRFNEDADVRVSIDHQTGDYQSLRRWQ 63
Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV + VE+ QISL A ++P I + + + L P++FGR+ Q+AKQVI QK+R+A
Sbjct: 64 VVADDAVEDPARQISLSEAFRQNPEIQLDEYIEEILEPVEFGRIGAQAAKQVIFQKIRDA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER++ +F ++ +++GT+KR+E GN I++ G + V+ RD+ I +ENLR GDRV++Y
Sbjct: 124 EREQILNDFLERKEYMVTGTIKRMERGNAIIESGRVEAVLPRDQMIPKENLRVGDRVRAY 183
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
++ + R RGPQ++LSR P+F++KLF +EVPEI G++++K +RDPGSRAK+AV S+D
Sbjct: 184 LHRIDRTTRGPQLILSRIVPEFLIKLFELEVPEIEEGLLEIKVAARDPGSRAKIAVKSND 243
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DP+G CVGMRGSRVQAV EL E++DI++WS D ATFVINAL PA ++ +++DE+
Sbjct: 244 QRVDPIGTCVGMRGSRVQAVTGELAGERVDIILWSDDPATFVINALAPAEISSILVDEEK 303
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
++++V + L+ AIGR GQNVRLAS+LTGW ++I+T EE +++F+ FM+
Sbjct: 304 HSMDIVVDEGNLAQAIGRGGQNVRLASELTGWELNIMTMEESQAKNEEEFSVLRHLFMEK 363
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425
++VDE +A +L EGF +EE+A V +SE+ IE FDE+T E++ RAR L I +
Sbjct: 364 LDVDEEVADILAQEGFTTLEEVAYVPLSEMMEIEAFDEQTVNELRNRARNALLTEAIVSE 423
Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485
+K+ ++E+L ++ G+DS+ L G+ T EDLA +VDDL+ E
Sbjct: 424 EKVE--HIAEDLLALEGMDSQTARELAAKGVSTQEDLADLAVDDLVEMVE---------- 471
Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518
++ +I+ AR W A
Sbjct: 472 -------MDTERARQLIMAARAP--WFAPADRA 495
>gi|307546728|ref|YP_003899207.1| transcription elongation factor NusA [Halomonas elongata DSM 2581]
gi|307218752|emb|CBV44022.1| transcription elongation factor NusA [Halomonas elongata DSM 2581]
Length = 497
Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats.
Identities = 205/513 (39%), Positives = 316/513 (61%), Gaps = 23/513 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66
E+L + DA++ EK + R+V+ + ++ A+R + + +RV I+ TGD FR
Sbjct: 4 EILAVVDAISNEKGVPREVIFEAVEAALASASRKRFEDEEASVRVHIDRNTGDYETFRRW 63
Query: 67 EVVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
EVVE+ + QI L A RDP + +G VV + + FGR+A Q+AKQVI+QKVRE
Sbjct: 64 EVVEDDDFDGPDAQIKLSFAERRDPPLGLGDVVEERIENAVFGRIAAQTAKQVIVQKVRE 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVK 183
AER + ++ GE+++G VK+ +I+DLG++ + + R E I E R +RV+
Sbjct: 124 AERAEVVSLYAEREGELVAGIVKKTTRDGLIIDLGDNAEAFLPRSEMIPGERYRMNERVR 183
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+ + V E RG Q++LSRT P+ +++LF +EVPEI ++++K +RDPGSRAK+AV +
Sbjct: 184 ALLTKVDPEARGAQLILSRTCPELIIELFKIEVPEIAEQLIEIKGAARDPGSRAKIAVKT 243
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
+D IDPVGACVGMRGSRVQAV TEL++E++DIV+W + A VINA+ PA V +++DE
Sbjct: 244 NDRRIDPVGACVGMRGSRVQAVSTELQNERVDIVLWDDNPAQLVINAMAPADVASILVDE 303
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
D ++V V ++ L+ AIGR GQNVRLAS+LTGW ++++TE E R ++ + + F+
Sbjct: 304 DAHAMDVAVGEDNLAQAIGRSGQNVRLASELTGWRLNVMTEAEAETKRDQEIDSLVEHFI 363
Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423
Q ++VD+ +A LLV EGF +EE+A V + E+ IE DEE E++ RA++ L + I
Sbjct: 364 QHLDVDDDVARLLVEEGFTSLEEVAYVPVEEMLEIEELDEELIEELRARAKDELLNLAIA 423
Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483
++++ +++L ++ G++ + L GI TMEDLA SVDDL E
Sbjct: 424 SEEELDGAQPADDLLAMDGMERHLAFILASRGIVTMEDLAEQSVDDLTDIEE-------- 475
Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
++ S+I+ AR W E E+
Sbjct: 476 ---------LDDERAASLIMTARAP--WFESEQ 497
>gi|254361245|ref|ZP_04977388.1| N utilization substance A [Mannheimia haemolytica PHL213]
gi|261492531|ref|ZP_05989084.1| N utilization substance A [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|261496806|ref|ZP_05993180.1| N utilization substance A [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|153092741|gb|EDN73784.1| N utilization substance A [Mannheimia haemolytica PHL213]
gi|261307553|gb|EEY08882.1| N utilization substance A [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261311690|gb|EEY12840.1| N utilization substance A [Mannheimia haemolytica serotype A2 str.
BOVINE]
Length = 498
Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats.
Identities = 188/513 (36%), Positives = 308/513 (60%), Gaps = 25/513 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L A+AV+ EK + ++ + + ++ A + D+RV ++ +TGD FR
Sbjct: 4 EILLAAEAVSNEKQLPKEAIFEALETALTIATKKSRDLDIDVRVVVDRKTGDFQTFRRWA 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVE V N T +ISL+ A+ DP++ +G + D + ++FGRVA+Q+ QV+ K+REAE+
Sbjct: 64 VVENVNNMTREISLEAAQFEDPNVQLGDFIEDEVESIEFGRVAIQTFGQVVKTKIREAEK 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDETISRENLRPGDR 181
+ EF+ +G+II TVK+V N+ ++L + VI R++ I REN RPGDR
Sbjct: 124 TKIIDEFRSDLGKIILATVKKVTRDNIFLELQGKSEDIKGEAVIVREDMIPRENFRPGDR 183
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V+ +Y+++ E +GPQ+ ++R P + +LF +EVPEI G++++K +RD GSRAK+AV
Sbjct: 184 VRGVLYEIKPESKGPQLFVTRAKPVMLEELFKLEVPEIGEGVIEIKGSARDVGSRAKIAV 243
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
+ D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+
Sbjct: 244 KTHDKRIDPVGACVGMRGARVQAISNELGGERVDIVLWDENPAQFVINAMAPADVSSIVI 303
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
+++ +++ V + L+ AIGR GQNVRLA+QLTGW ++++T EE + +++ +
Sbjct: 304 NDETHSMDIAVEAKNLAQAIGRNGQNVRLATQLTGWALNVMTVEELTKKSEEEDGKVINL 363
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGI 420
A+ +DE A +L+ EGF +E +A V + + +I+G DE+ E+Q RA+ +
Sbjct: 364 LTSALEIDEEFAQVLIEEGFTSLEAIAYVPVDTLTAIDGLEDEDLVEELQSRAKNAITKK 423
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ +K ++ + E+L ++ G+D I L E I T+E+LA VDDL E
Sbjct: 424 ALEEEKLLKSAQIEEKLLTLEGMDRHIAFKLAEKQITTLEELAEQGVDDLADIEE----- 478
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
+++ +I+ AR ++ W
Sbjct: 479 ------------LSEEKAGELIMAAR-QICWFN 498
>gi|325526251|gb|EGD03870.1| transcription elongation factor NusA [Burkholderia sp. TJI49]
Length = 491
Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats.
Identities = 213/508 (41%), Positives = 337/508 (66%), Gaps = 24/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR
Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ +I L AR++ P +++G + +P+P ++FGR+ Q+AKQVI+QKVR+
Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPDVEVGEFIEEPVPSIEFGRIGAQAAKQVILQKVRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++
Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V +
Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVIAY 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+
Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E ++ + ++ + FM
Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESALKQGEERDRLRALFMA 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I
Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +L S+ G+ ++ L E+G+ T +DLA +VD+L+ +
Sbjct: 424 EEKVENAAL--DLKSLDGVTPELLAKLAEHGVATRDDLAELAVDELVDMT---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512
G +D +++I+ AR W
Sbjct: 472 -------GMEEDAAKALIMKAREH--WF 490
>gi|326794269|ref|YP_004312089.1| NusA antitermination factor [Marinomonas mediterranea MMB-1]
gi|326545033|gb|ADZ90253.1| NusA antitermination factor [Marinomonas mediterranea MMB-1]
Length = 496
Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats.
Identities = 194/512 (37%), Positives = 320/512 (62%), Gaps = 22/512 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L +A+AV+ EK + + V+ + ++ AA+ + IRV I+ TGD + FR
Sbjct: 4 EILLVAEAVSNEKDVPKQVIFEAVETALASAAKRRFEEDVKIRVSIDQRTGDYNTFRQWN 63
Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+V E+ ++++ + ++ + IG + + +P +FGR+A Q+AKQVI+QKVREA
Sbjct: 64 IVADEDYSYPDSELTIDDSVEQSLGLAIGEIYEEEIPSEEFGRIAAQTAKQVIVQKVREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER + + +KVG+++ G VK+V ++IVDLG + + + +D+ I+RE R DR+++
Sbjct: 124 ERAKVVARYSEKVGKLVHGQVKKVTRDSLIVDLGENAEAALPKDQLINREMFRMNDRIRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ ++R + RGPQ++LSR P+FM++LF +EVPEI +++++ SRDPG RAK+AV ++
Sbjct: 184 LLSEIREDGRGPQLVLSRNVPEFMIELFKLEVPEIAEEVIEIRGASRDPGLRAKIAVKTN 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+GACVGMRG+RVQAV E+ E++DIV+W + A VINA+ PA V +V+DED
Sbjct: 244 DRRIDPIGACVGMRGARVQAVSNEMNGERVDIVLWDDNPAQLVINAMAPAEVDSIVIDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V V + L+ AIGR GQNVRLA+ LTGW ++++T EE +Q++ + F+
Sbjct: 304 AHSMDVAVKSDNLAQAIGRNGQNVRLATSLTGWALNVMTSEEAQSKQQEESQKLIDVFVN 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++++D+ +A LV EGF +EE+A V + E+ I+GFDE+ E++ RA+E L +
Sbjct: 364 SLDIDDDLALQLVDEGFETLEEVAYVPMEEMLDIDGFDEDLVNELRSRAKESLLNQALQA 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +E+L ++ G+DS + + GI TMEDLA SVD+LL
Sbjct: 424 EEKLDDAKPAEDLLTMEGMDSHLALVFASKGIITMEDLAEQSVDELLEIE---------- 473
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
G +++ S+I+ AR W + +
Sbjct: 474 -------GITEERAASLILTARAP--WFAESE 496
>gi|221134838|ref|ZP_03561141.1| transcription elongation factor NusA [Glaciecola sp. HTCC2999]
Length = 494
Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats.
Identities = 206/512 (40%), Positives = 316/512 (61%), Gaps = 25/512 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L +A+AV+ EK + ++ + + ++ A + ++RV I+ TGD FR
Sbjct: 4 EILLVAEAVSNEKQVPKEKIFEALEFALSTATKKKNEGEIEVRVAIDRATGDFDTFRQWL 63
Query: 68 VVEEV---ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
V+ + EN ++++ A+ +P I IG V + + + F R+ Q+AKQVI QKVRE
Sbjct: 64 VIPDDQVQENPYAEMTISAAQIDEPEIQIGDFVEEQIESIKFDRITTQTAKQVIFQKVRE 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVK 183
AER + E++D+VGE+++GTVK+V NVI+DLGN+ +GVI RD+ + REN RPGDRV+
Sbjct: 124 AERAQMIAEYEDRVGELVTGTVKKVNRDNVIIDLGNNAEGVIYRDDMLPRENFRPGDRVR 183
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+Y +R E RG Q+ +SRTHP +V+LF +EVPEI +++K+ +RDPGSRAK+AV +
Sbjct: 184 GLLYVIRPEARGAQLFISRTHPDMIVELFRLEVPEIAEETLEIKSAARDPGSRAKIAVKT 243
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
+D +DPVGACVGMRGSRVQAV +EL E++DIV+W ++ FVINA+ PA V +V DE
Sbjct: 244 NDKRLDPVGACVGMRGSRVQAVSSELGGERVDIVLWDEEAPQFVINAMAPAEVASIVADE 303
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
D ++V V + L+ AIG+ GQNVRLASQLTGW ++++T E+ +Q + + F+
Sbjct: 304 DTMTMDVAVEPDNLAQAIGKSGQNVRLASQLTGWELNVMTIEDLEKKQQDESAQIIDVFV 363
Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423
+++DE A +L +EGF +EE+A V +SE+ IEG DE+ E++ RAR YL +
Sbjct: 364 TGLDIDEEFAGVLASEGFTSLEEIAYVPVSELLEIEGLDEDIIEELRNRARAYLTTKALA 423
Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483
++ L EEL ++ G+ ++I VAL + G+ +E+LA D++
Sbjct: 424 DEES---LEPKEELLNLAGMTNEIAVALAKQGVTDLEELAEQGTDEICDIE--------- 471
Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G + I+ AR + W +E
Sbjct: 472 --------GLDEKSAGDFIMAAR-NIKWFNEE 494
>gi|167582087|ref|ZP_02374961.1| transcription elongation factor NusA [Burkholderia thailandensis
TXDOH]
Length = 491
Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats.
Identities = 211/508 (41%), Positives = 336/508 (66%), Gaps = 24/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR
Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ +I L AR++ P +++G + +P+P ++FGR+ Q+AKQVI+QKVR+
Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPGVEVGDYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++
Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V +
Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+
Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ + FM
Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNEERDALRGLFMA 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L + I
Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTMAIAN 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +L S+ G+ ++ L E G++T +DLA +VD+L+ +
Sbjct: 424 EEKVETAAL--DLKSLDGVTPELLAKLAEQGVQTRDDLAELAVDELVDMT---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512
G ++ +++I+ AR W
Sbjct: 472 -------GMEEEAAKALIMKAREH--WF 490
>gi|291613948|ref|YP_003524105.1| NusA antitermination factor [Sideroxydans lithotrophicus ES-1]
gi|291584060|gb|ADE11718.1| NusA antitermination factor [Sideroxydans lithotrophicus ES-1]
Length = 491
Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats.
Identities = 203/508 (39%), Positives = 320/508 (62%), Gaps = 24/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66
E+L + DA+A EK++D+++V + ++ A + + +D+RV I+ ++G+ FR
Sbjct: 4 EVLLLVDALAREKNVDKEIVFGALESALASATKKRFSDEEADVRVSIDRQSGEYESFRRW 63
Query: 67 EVVEEV--ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
+V+++ E I L+ A+ RDP I + + +PL +DFGR+ Q+AKQVI QK+R+
Sbjct: 64 QVMDDETFETPELHIKLEEAQKRDPHIQLEEFIEEPLENIDFGRIGAQAAKQVIFQKIRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ +F ++ ++SGT+KR+E GN IV+ G + ++ RD+ I +ENLR GDRV++
Sbjct: 124 AEREQILADFMERNEHLVSGTIKRIERGNAIVEFGKIEALLPRDQMIPKENLRVGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
Y+ V R RGPQ++LSR +F+ KLF +EVPEI G++++ + +RDPGSRAK+AV S
Sbjct: 184 YLLRVDRTVRGPQIILSRITTEFLSKLFELEVPEIEEGLLEIVSAARDPGSRAKIAVRSH 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D +DP+G CVGMRGSRVQAV EL E++DI++WS + AT+VINAL PA VT +V+DE+
Sbjct: 244 DQRLDPIGTCVGMRGSRVQAVTNELAGERVDIILWSEEPATYVINALAPAEVTSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V +E L+ AIGR GQNVRLAS +TGW I+++T E+ + +++F++ F+
Sbjct: 304 KHSMDVVVEEENLAQAIGRGGQNVRLASDMTGWEINLMTVEQSAEKNEQEFSKIRDLFVA 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +LV EGF +EE+A V + E+ +IE FDE T E++ RAR L I
Sbjct: 364 KLDVDEEVADILVQEGFNTLEEVAYVPLEEMQAIESFDEATVNELRSRARNALLTAAIVN 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++++ E+L I G+D + L G+ T E LA D+L+ +
Sbjct: 424 EEQVE--HNIEDLLKIAGMDEETARTLAGKGVGTQEQLADLDGDELVEMT---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512
G ++ +I+ AR W
Sbjct: 472 -------GMDAERANQLIMTARAP--WF 490
>gi|134295573|ref|YP_001119308.1| transcription elongation factor NusA [Burkholderia vietnamiensis
G4]
gi|134138730|gb|ABO54473.1| NusA antitermination factor [Burkholderia vietnamiensis G4]
Length = 491
Score = 448 bits (1152), Expect = e-123, Method: Composition-based stats.
Identities = 214/508 (42%), Positives = 337/508 (66%), Gaps = 24/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR
Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ +I L AR++ P +++G + +P+P ++FGR+ Q+AKQVI+QKVR+
Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPDVEVGEFIEEPVPSIEFGRIGAQAAKQVILQKVRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++
Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V +
Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVIAY 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+
Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E ++ + ++ FM
Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESALKQGEERERLRALFMA 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I
Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +L S+ GI ++ L E+G++T +DLA +VD+L+ +
Sbjct: 424 EEKVENAAL--DLKSLDGITPELLTKLAEHGVQTRDDLAELAVDELVDMT---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512
G +D +++I+ AR W
Sbjct: 472 -------GVEEDAAKALIMKAREH--WF 490
>gi|254468012|ref|ZP_05081418.1| transcription termination factor NusA [beta proteobacterium KB13]
gi|207086822|gb|EDZ64105.1| transcription termination factor NusA [beta proteobacterium KB13]
Length = 485
Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats.
Identities = 202/506 (39%), Positives = 329/506 (65%), Gaps = 21/506 (4%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+L + DA+A+EK++ +++V + + ++ A + Y +DIRV+I+PE+G FR V
Sbjct: 1 MLILVDALAHEKNVSKEIVFNALELALASATKKKYPHGTDIRVKIDPESGAYESFRCWTV 60
Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
VEE + + + DR IG V+ + +P +FGR+ Q+AKQVI+QKVREAER+
Sbjct: 61 VEEENLENEEAEILLIDDRAKDKQIGDVIEESIPSEEFGRIGAQAAKQVILQKVREAERE 120
Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
+ EF + +++ G ++R+E GN I+++G + ++ RD+ I +ENLR GDR+++ +
Sbjct: 121 QVLNEFLARDEKLVMGQIRRMERGNAIIEIGKLEAILPRDQMIPKENLRVGDRIRAALLK 180
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
+ RGPQ++LSRT P+F++KLF +EVPEI G++++ + SRDPGSR+K+AV ++D +
Sbjct: 181 IETSMRGPQLILSRTSPEFIIKLFEIEVPEIEEGLLEIMSASRDPGSRSKIAVKANDQRL 240
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308
DPVG CVGMRGSRVQAV TEL E++DIV+WS + A FVIN++ PA V+ +V+DE+ +
Sbjct: 241 DPVGTCVGMRGSRVQAVTTELSGERVDIVLWSIEPAQFVINSMAPAEVSSIVVDEEKRSM 300
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368
+++V ++QL+LAIGR GQN+RLASQLTGW ++I+TEEE +++++ +Q F++ ++V
Sbjct: 301 DIVVDEDQLALAIGRNGQNIRLASQLTGWELNIMTEEESEKKHEEEYSTVSQLFIEKLDV 360
Query: 369 DEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKI 428
DE +A +LV EGF +EE+A V E+ ++ FDE+T E++ RA+ + I ++K+
Sbjct: 361 DEEVADILVKEGFTSLEEIAYVPTEELNQMDIFDEDTIEELRSRAKAAILTAAIANEEKV 420
Query: 429 RELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFL 488
E E+L ++ G+D L GI +MEDLA +VD+LL
Sbjct: 421 PEA--QEDLLTMEGMDQNTANLLASKGIVSMEDLAELAVDELLDI--------------- 463
Query: 489 SSLGTPKDQVESMIIHARYKMGWIEK 514
+ +++ + +I+ AR W +
Sbjct: 464 --IKIDEEKAKELIMTARAP--WFTE 485
>gi|171463768|ref|YP_001797881.1| NusA antitermination factor [Polynucleobacter necessarius subsp.
necessarius STIR1]
gi|171193306|gb|ACB44267.1| NusA antitermination factor [Polynucleobacter necessarius subsp.
necessarius STIR1]
Length = 493
Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats.
Identities = 198/510 (38%), Positives = 325/510 (63%), Gaps = 25/510 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66
E+L +ADA+A EK++ + +V + ++ A + Y DIRV I+ ETG+ FR
Sbjct: 4 EVLMLADALAREKNVGQAIVFEALEMALASATKKCYATEDVDIRVSIDRETGEYETFRRW 63
Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
VV ++ +I A+++ +++G + + + + FGR+ Q+AKQVI+Q++R
Sbjct: 64 LVVPNEAGLQEPDKEILQFEAQEQLADMEVGDYIEEQIESLAFGRIGAQAAKQVILQRIR 123
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183
+AER++ + ++ ++++GTVKR + VI++ G + ++RRD+ I +ENLR GDRV+
Sbjct: 124 DAEREQILNDHLERGEKVMTGTVKRADKNGVIIESGRVEALLRRDQMIPKENLRSGDRVR 183
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+YI V RE RGPQ+ LSRT P F++KLF EVPE+ G++++K +RDPG RAK+AV +
Sbjct: 184 AYILKVDREARGPQIELSRTCPDFLIKLFENEVPEMEQGLLEIKGAARDPGIRAKIAVIT 243
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V+ +V+DE
Sbjct: 244 YDKRIDPIGTCVGVRGTRVTAVRNEVAGEAVDIVLWSEDPAQFVIGALAPAQVSSIVVDE 303
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
+ ++V+V +E L++AIGR GQNVRLAS LTGW I+I+T EE + +K+ + Q FM
Sbjct: 304 ERHAMDVVVDEENLAIAIGRSGQNVRLASDLTGWQINIMTPEESAEKTEKEASSVRQLFM 363
Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423
++VD+ +A +L+ EGF +EE+A V +SE+ I+ FD++T E++ RAR+ L +++
Sbjct: 364 DKLDVDQEVADILIEEGFNTLEEVAYVPLSEMLEIDSFDKDTVNELRTRARDSLLTMELA 423
Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483
+++I E VS++L S+ G+ +++ L +N + T +DLA +VD+L+ ++
Sbjct: 424 KEERIGE--VSQDLRSLEGMTTELIAKLADNQVHTRDDLAELAVDELVEATQ-------- 473
Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
++ +++I+ AR W
Sbjct: 474 ---------IDEETAKTLIMKAREH--WFT 492
>gi|171317091|ref|ZP_02906294.1| NusA antitermination factor [Burkholderia ambifaria MEX-5]
gi|171097725|gb|EDT42552.1| NusA antitermination factor [Burkholderia ambifaria MEX-5]
Length = 491
Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats.
Identities = 213/508 (41%), Positives = 337/508 (66%), Gaps = 24/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR
Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ +I L AR+++P +++G V +P+P ++FGR+ Q+AKQVI+QKVR+
Sbjct: 64 VVPDEAGLQEPDREILLFEAREQNPDVEVGEFVEEPVPSIEFGRIGAQAAKQVILQKVRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++
Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V +
Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVIAY 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+
Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V + +L++AIGR GQNVRLA +LTGW I+I+T +E ++ + ++ + FM
Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLAGELTGWQINIMTPDESALKQGEERDRLRALFMA 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I
Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +L + GI ++ L E+G++T +DLA +VD+L+ +
Sbjct: 424 EEKVENAAL--DLKGLDGITPELLAKLAEHGMQTRDDLAELAVDELVDMT---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512
G +D +++I+ AR W
Sbjct: 472 -------GMEEDAAKALIMKAREH--WF 490
>gi|115351434|ref|YP_773273.1| transcription elongation factor NusA [Burkholderia ambifaria AMMD]
gi|170700023|ref|ZP_02891048.1| NusA antitermination factor [Burkholderia ambifaria IOP40-10]
gi|172060473|ref|YP_001808125.1| transcription elongation factor NusA [Burkholderia ambifaria
MC40-6]
gi|115281422|gb|ABI86939.1| NusA antitermination factor [Burkholderia ambifaria AMMD]
gi|170135082|gb|EDT03385.1| NusA antitermination factor [Burkholderia ambifaria IOP40-10]
gi|171992990|gb|ACB63909.1| NusA antitermination factor [Burkholderia ambifaria MC40-6]
Length = 491
Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats.
Identities = 212/508 (41%), Positives = 337/508 (66%), Gaps = 24/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR
Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ +I L AR+++P +++G V +P+P ++FGR+ Q+AKQVI+QKVR+
Sbjct: 64 VVPDEAGLQEPDREILLFEAREQNPDVEVGEFVEEPVPSIEFGRIGAQAAKQVILQKVRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++
Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V +
Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVIAY 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+
Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V + +L++AIGR GQNVRLA +LTGW I+I+T +E ++ + ++ + FM
Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLAGELTGWQINIMTPDESALKQGEERDRLRALFMA 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I
Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +L + G+ ++ L E+G++T +DLA +VD+L+ +
Sbjct: 424 EEKVENAAL--DLKGLDGVTPELLAKLAEHGMQTRDDLAELAVDELVDMT---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512
G +D +++I+ AR W
Sbjct: 472 -------GMEEDAAKALIMKAREH--WF 490
>gi|160871616|ref|ZP_02061748.1| NusA antitermination factor [Rickettsiella grylli]
gi|159120415|gb|EDP45753.1| NusA antitermination factor [Rickettsiella grylli]
Length = 512
Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats.
Identities = 209/529 (39%), Positives = 316/529 (59%), Gaps = 37/529 (6%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+ E+L +A+ V+ EK +D++++ + ++ A + G D+R+ I+ TGD FR
Sbjct: 2 KKEILLVAETVSNEKDVDKELIFKAIEAALAMATKKKAGEDIDVRIAIDRRTGDYETFRT 61
Query: 66 LEVVEEV------------ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQS 113
VV + + I L A+ R P+ IG ++ + +P ++FGR+A Q+
Sbjct: 62 WTVVADEAEFNHSDEIPVSFDPLKHIQLSEAKKRHPNSQIGDIIEERMPSVEFGRIAAQT 121
Query: 114 AKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETIS 172
AKQVIIQKVREAER + + ++VGE++SG VKRV +IVDLG + + + R+E I
Sbjct: 122 AKQVIIQKVREAERAKIAEAYTNRVGELLSGIVKRVTREGLIVDLGASVEAFVPREEMIP 181
Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRD 232
RE +R DR++ Y+Y V + RGPQ+L+SRT P+ +++LF +EVPEI ++++K+ +RD
Sbjct: 182 REEIRSEDRLRGYLYAVNPQVRGPQLLMSRTRPEMLIELFKIEVPEIGEELIEIKSAARD 241
Query: 233 PGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALR 292
PGSRAK+AV ++D IDP+GACVGMRG+RVQAV +EL E+IDIV+W + VINA+
Sbjct: 242 PGSRAKIAVKTNDGRIDPIGACVGMRGARVQAVSSELAGERIDIVLWDDNPVQLVINAMA 301
Query: 293 PAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
PA V +V+DED ++V V ++QLS AIGR GQNVRLAS+LTGW I++IT EE +
Sbjct: 302 PAEVASIVVDEDTKVMDVAVQEDQLSQAIGRNGQNVRLASELTGWIINVITVEEAAKKIV 361
Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412
K+ F++ + +DE +A +LV EGF +EE+A V E+ +IEGFD +Q R
Sbjct: 362 KESENLQNLFIEQLTIDEALAEMLVREGFTSLEEIAYVSAQELLAIEGFDSILVEMLQTR 421
Query: 413 AREYLEGIDITLQ-----KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSV 467
A+E L T Q + + L +L S+ G+ +I L + G+ + E LA +V
Sbjct: 422 AKEVLALQAPTKQKSSTTEHEKFLEPHRDLLSLEGMTEEIATTLAKRGVSSREALAELAV 481
Query: 468 DDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
DDLL E +++ +I+ AR W +EK
Sbjct: 482 DDLLDIIE-----------------LDREKAGKLIMSARAP--WFVEEK 511
>gi|167562940|ref|ZP_02355856.1| transcription elongation factor NusA [Burkholderia oklahomensis
EO147]
Length = 491
Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats.
Identities = 211/508 (41%), Positives = 338/508 (66%), Gaps = 24/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR
Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ +I L AR++ P +++G + +P+P ++FGR+ Q+AKQVI+QKVR+
Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPDVEVGDYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++
Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V +
Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+
Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E ++ + ++ + F+
Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESALKQNEERDALRGLFIA 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L + I
Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTMAIAN 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +L S+ G+ S++ L E G++T +DLA +VD+L+ +
Sbjct: 424 EEKVETAAL--DLKSLDGVTSELLAKLAEQGVQTRDDLAELAVDELVDMT---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512
G ++ +++I+ AR W
Sbjct: 472 -------GMDEESAKALIMKAREH--WF 490
>gi|92115190|ref|YP_575118.1| NusA antitermination factor [Chromohalobacter salexigens DSM 3043]
gi|91798280|gb|ABE60419.1| NusA antitermination factor [Chromohalobacter salexigens DSM 3043]
Length = 497
Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats.
Identities = 201/513 (39%), Positives = 310/513 (60%), Gaps = 23/513 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66
E+L + DA++ EK + R+V+ + ++ A+R + G RV+I+ TGD FR
Sbjct: 4 EILLVVDAISNEKGVPREVIFEAVESALASASRKRFDGQEVSTRVKIDRATGDYDTFRRW 63
Query: 67 EVVEEV--ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VVE+ EN +I L A RDP + +G VV + + + FGR+A Q+AKQVI+QKVRE
Sbjct: 64 TVVEDEAFENPDSEIPLSEAERRDPPLALGDVVEEQVESVAFGRIAAQTAKQVIVQKVRE 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVK 183
AER ++ ++ GE+++G VK+ +IVDLG + + + R E I E R +RV+
Sbjct: 124 AERAEVVRQYAEREGELVAGIVKKTTREGLIVDLGENAEAFLPRSEMIPGERYRMNERVR 183
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+ ++ V E RG Q++L+RT P +V+LF +EVPEI ++++K +RDPG+RAK+AV +
Sbjct: 184 ALLWKVDAEARGSQLILTRTRPDMIVELFKIEVPEIAEQLIEIKGAARDPGARAKIAVKT 243
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
+D IDPVGACVGMRGSRVQAV ELR+E++DI++W + A VINA+ PA V +++DE
Sbjct: 244 NDKRIDPVGACVGMRGSRVQAVSNELRNERVDIIMWDDNPAQLVINAMAPAEVGSILVDE 303
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
D ++V V ++ L+ AIGR GQNVRLAS+LTGWT++++TEEE R+++ + ++F+
Sbjct: 304 DAHSMDVAVAEDNLAQAIGRSGQNVRLASELTGWTLNVMTEEEAEGKREQEIDSLIEYFI 363
Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423
+ VDE +A LLV EGF +EELA V + E+ IE DE ++ RA++ L + I
Sbjct: 364 NHLEVDEELARLLVEEGFTSLEELAYVPLEELLEIEELDEALIETLRARAKDELLTLAIA 423
Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483
++ + ++L + G+D + L GI T EDLA S+
Sbjct: 424 SEEALDGAQPDDDLLEMEGMDRHLAFTLASRGIVTREDLAEQSI---------------- 467
Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
D +++ ++I+ AR W E E+
Sbjct: 468 -DDLKDIDDVDEERAAALIMTARAP--WFESEQ 497
>gi|186476488|ref|YP_001857958.1| transcription elongation factor NusA [Burkholderia phymatum STM815]
gi|184192947|gb|ACC70912.1| NusA antitermination factor [Burkholderia phymatum STM815]
Length = 491
Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats.
Identities = 215/508 (42%), Positives = 335/508 (65%), Gaps = 24/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++D+DVV + + ++ A++ L+ +DIRV I+ E+G+ FR +
Sbjct: 4 EVLMLVDALAREKNVDKDVVFAALEAALASASKKLFDEDADIRVHIDRESGEHETFRRWK 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ +I L AR++ I + +P+P ++FGR+ Q+AKQVI+QKVR+
Sbjct: 64 VVPDEAGLQEPDQEILLFEAREQKADAQIDDFLEEPVPSIEFGRIGAQAAKQVILQKVRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ +F ++ I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++
Sbjct: 124 AEREQILNDFLERGESIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V +
Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVG+RGSRVQAV EL E +DIV+WS D A FVI AL PA V +V+DE+
Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENVDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ FM
Sbjct: 304 KHSMDVVVDESELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNQERGVLRDLFMA 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I
Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ GV+ +L S+ G+D+++ L E+ I+T +DLA +VD+L+ +
Sbjct: 424 EEKVE--GVALDLKSLDGMDAELLAKLAEHQIQTRDDLAELAVDELVEMT---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512
G +D +++I+ AR W
Sbjct: 472 -------GVTEDAAKALIMKAREH--WF 490
>gi|53719533|ref|YP_108519.1| transcription elongation factor NusA [Burkholderia pseudomallei
K96243]
gi|53724824|ref|YP_102761.1| transcription elongation factor NusA [Burkholderia mallei ATCC
23344]
gi|76808602|ref|YP_333313.1| transcription elongation factor NusA [Burkholderia pseudomallei
1710b]
gi|121598320|ref|YP_992838.1| transcription elongation factor NusA [Burkholderia mallei SAVP1]
gi|124384704|ref|YP_001026181.1| transcription elongation factor NusA [Burkholderia mallei NCTC
10229]
gi|126439048|ref|YP_001058778.1| transcription elongation factor NusA [Burkholderia pseudomallei
668]
gi|126449841|ref|YP_001080549.1| transcription elongation factor NusA [Burkholderia mallei NCTC
10247]
gi|126455004|ref|YP_001066030.1| transcription elongation factor NusA [Burkholderia pseudomallei
1106a]
gi|134282331|ref|ZP_01769036.1| transcription termination factor NusA [Burkholderia pseudomallei
305]
gi|167004351|ref|ZP_02270109.1| transcription termination factor NusA [Burkholderia mallei PRL-20]
gi|167719819|ref|ZP_02403055.1| transcription elongation factor NusA [Burkholderia pseudomallei
DM98]
gi|167738820|ref|ZP_02411594.1| transcription elongation factor NusA [Burkholderia pseudomallei 14]
gi|167816041|ref|ZP_02447721.1| transcription elongation factor NusA [Burkholderia pseudomallei 91]
gi|167824417|ref|ZP_02455888.1| transcription elongation factor NusA [Burkholderia pseudomallei 9]
gi|167845949|ref|ZP_02471457.1| transcription elongation factor NusA [Burkholderia pseudomallei
B7210]
gi|167894526|ref|ZP_02481928.1| transcription elongation factor NusA [Burkholderia pseudomallei
7894]
gi|167902931|ref|ZP_02490136.1| transcription elongation factor NusA [Burkholderia pseudomallei
NCTC 13177]
gi|167911167|ref|ZP_02498258.1| transcription elongation factor NusA [Burkholderia pseudomallei
112]
gi|167919191|ref|ZP_02506282.1| transcription elongation factor NusA [Burkholderia pseudomallei
BCC215]
gi|217423351|ref|ZP_03454852.1| transcription termination factor NusA [Burkholderia pseudomallei
576]
gi|226199712|ref|ZP_03795265.1| transcription termination factor NusA [Burkholderia pseudomallei
Pakistan 9]
gi|237812041|ref|YP_002896492.1| transcription elongation factor NusA [Burkholderia pseudomallei
MSHR346]
gi|238562584|ref|ZP_00440122.2| transcription termination factor NusA [Burkholderia mallei GB8
horse 4]
gi|242314941|ref|ZP_04813957.1| transcription termination factor NusA [Burkholderia pseudomallei
1106b]
gi|254178511|ref|ZP_04885166.1| transcription termination factor NusA [Burkholderia mallei ATCC
10399]
gi|254179981|ref|ZP_04886580.1| transcription termination factor NusA [Burkholderia pseudomallei
1655]
gi|254188607|ref|ZP_04895118.1| transcription termination factor NusA [Burkholderia pseudomallei
Pasteur 52237]
gi|254198017|ref|ZP_04904439.1| transcription termination factor NusA [Burkholderia pseudomallei
S13]
gi|254206031|ref|ZP_04912383.1| transcription termination factor NusA [Burkholderia mallei JHU]
gi|254260843|ref|ZP_04951897.1| transcription termination factor NusA [Burkholderia pseudomallei
1710a]
gi|254358405|ref|ZP_04974678.1| transcription termination factor NusA [Burkholderia mallei
2002721280]
gi|52209947|emb|CAH35919.1| N utilization substance protein A [Burkholderia pseudomallei
K96243]
gi|52428247|gb|AAU48840.1| N utilization substance protein A [Burkholderia mallei ATCC 23344]
gi|76578055|gb|ABA47530.1| N utilization substance protein A [Burkholderia pseudomallei 1710b]
gi|121227130|gb|ABM49648.1| transcription termination factor NusA [Burkholderia mallei SAVP1]
gi|124292724|gb|ABN01993.1| N utilization substance protein A [Burkholderia mallei NCTC 10229]
gi|126218541|gb|ABN82047.1| transcription termination factor NusA [Burkholderia pseudomallei
668]
gi|126228646|gb|ABN92186.1| transcription termination factor NusA [Burkholderia pseudomallei
1106a]
gi|126242711|gb|ABO05804.1| transcription termination factor NusA [Burkholderia mallei NCTC
10247]
gi|134246369|gb|EBA46458.1| transcription termination factor NusA [Burkholderia pseudomallei
305]
gi|147753474|gb|EDK60539.1| transcription termination factor NusA [Burkholderia mallei JHU]
gi|148027532|gb|EDK85553.1| transcription termination factor NusA [Burkholderia mallei
2002721280]
gi|157936286|gb|EDO91956.1| transcription termination factor NusA [Burkholderia pseudomallei
Pasteur 52237]
gi|160699550|gb|EDP89520.1| transcription termination factor NusA [Burkholderia mallei ATCC
10399]
gi|169654758|gb|EDS87451.1| transcription termination factor NusA [Burkholderia pseudomallei
S13]
gi|184210521|gb|EDU07564.1| transcription termination factor NusA [Burkholderia pseudomallei
1655]
gi|217393209|gb|EEC33230.1| transcription termination factor NusA [Burkholderia pseudomallei
576]
gi|225928298|gb|EEH24332.1| transcription termination factor NusA [Burkholderia pseudomallei
Pakistan 9]
gi|237503145|gb|ACQ95463.1| transcription elongation factor NusA [Burkholderia pseudomallei
MSHR346]
gi|238522259|gb|EEP85704.1| transcription termination factor NusA [Burkholderia mallei GB8
horse 4]
gi|242138180|gb|EES24582.1| transcription termination factor NusA [Burkholderia pseudomallei
1106b]
gi|243060319|gb|EES42505.1| transcription termination factor NusA [Burkholderia mallei PRL-20]
gi|254219532|gb|EET08916.1| transcription termination factor NusA [Burkholderia pseudomallei
1710a]
Length = 491
Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats.
Identities = 210/508 (41%), Positives = 335/508 (65%), Gaps = 24/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR
Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ +I L AR++ P +++G + + +P ++FGR+ Q+AKQVI+QKVR+
Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPDVEVGDYIEESVPSIEFGRIGAQAAKQVILQKVRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++
Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V +
Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+
Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ + FM
Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNEERDALRGLFMA 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L + I
Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTMAIAN 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +L S+ G+ ++ L E G++T +DLA +VD+L+ +
Sbjct: 424 EEKVETAAL--DLKSLDGVTPELLAKLAEQGVQTRDDLAELAVDELVDMT---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512
G ++ +++I+ AR W
Sbjct: 472 -------GMEEEAAKALIMKAREH--WF 490
>gi|21672641|ref|NP_660708.1| transcription elongation factor NusA [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
gi|25090841|sp|Q8K9H0|NUSA_BUCAP RecName: Full=Transcription elongation protein nusA
gi|21623276|gb|AAM67919.1| N utilization substance protein A [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 495
Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats.
Identities = 187/509 (36%), Positives = 304/509 (59%), Gaps = 19/509 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV IN +TG+ S FR
Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALEIALATATKKKYEQEIDVRVSINRKTGNFSTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV+ V + T +I+L+ A + I V D + ++F R+ Q+AKQVI+QKVREA
Sbjct: 62 WMVVDIVVHPTKEITLEAACFEGEQVKINDYVEDKIESVNFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F+ +G+II+G VK++ N+ +DLGN+ + +I R+ + REN RPGDR++
Sbjct: 122 ERAMLVDQFRKHIGQIITGIVKKISRDNLTLDLGNNAEALILREGMLPRENFRPGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y V E RG Q+ LSR+ + +++LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 ILYGVYPEARGAQLFLSRSKTEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+GACVGMRG+RVQAV +EL E+IDI++W + A FVINA+ PA V +++DED
Sbjct: 242 DKRIDPIGACVGMRGARVQAVSSELCGERIDIILWDDNPAQFVINAMAPADVVSIIVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V L+ AIGR GQNVRLASQ++GW ++++T E+ +++ F +
Sbjct: 302 HHTMDIAVDSSNLAQAIGRNGQNVRLASQISGWELNVMTTEDLRSKHKEEAYAAFNIFKK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+NV E + LV EGF+ +EELA + ++E+ I E ++ A+ L +++
Sbjct: 362 NLNVSEKVIKTLVKEGFSSLEELAYIPLNELLEINNLTEREVQLVREGAKNGLLLLELDQ 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
+ +I+ + + L ++ G++ + + L E I T+E+LA +DDL+
Sbjct: 422 KNQIKNKKIEQALLNVNGMNELLALKLAEKNIFTVEELANQGIDDLIDIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513
+Q +I+ AR + W
Sbjct: 472 -------NLNSEQAGLLIMAAR-NICWFS 492
>gi|221067737|ref|ZP_03543842.1| NusA antitermination factor [Comamonas testosteroni KF-1]
gi|220712760|gb|EED68128.1| NusA antitermination factor [Comamonas testosteroni KF-1]
Length = 495
Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats.
Identities = 203/512 (39%), Positives = 319/512 (62%), Gaps = 24/512 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
ELL + +A++ EK+++RDVV + ++ +A + LY DIRV I+ E+GD FR
Sbjct: 2 NRELLMLVEAISREKNVERDVVFGAVESALAQATKKLYQGEVDIRVSIDRESGDYDTFRR 61
Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
VV + ++N + L A DR P I IG + + + + GR+ +AKQVI+QK+
Sbjct: 62 WVVVSDDAGLQNPDAEEMLMDAEDRVPGIQIGEFIEEQIESLPIGRIGAMAAKQVILQKI 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182
R+AER+ EF + +I +GTVKR++ G++IV+ G +G ++R E I +ENLR GDRV
Sbjct: 122 RDAEREMLLNEFLARGDKIFTGTVKRMDKGDIIVESGRVEGRLKRGEMIPKENLRNGDRV 181
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
++ I +V RG +LLSR+ P+FMV+LF EVPEI G++++K+ +RD GSRAK+AV
Sbjct: 182 RAMIMEVDATLRGAPILLSRSAPEFMVELFRNEVPEIEQGLLEIKSCARDAGSRAKIAVL 241
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA V+ +V+D
Sbjct: 242 SHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVVD 301
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
E+ ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+ E + + + + F
Sbjct: 302 EEKHAMDVVVDEENLAIAIGRGGQNVRLASELTGWKINIMDAAESAQKQADESAVSRKLF 361
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
M+ ++VDE IA++L+ EGF +EE+A V + E+ IE FDEET E++ RA++ L +I
Sbjct: 362 MEKLDVDEEIANILIEEGFETLEEVAYVPLQEMLEIESFDEETVNELRSRAKDALLSQEI 421
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482
++ + + SE+L S+ G+ +++ L + + T +DLA ++D+L +
Sbjct: 422 AREENVSKA--SEDLVSLDGMTAELLDKLAQADVHTRDDLADLAIDELTDITGQ------ 473
Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
++ +++I+ AR W
Sbjct: 474 -----------TAEEAKALIMKAREH--WFAD 492
>gi|87119792|ref|ZP_01075689.1| transcription elongation factor NusA [Marinomonas sp. MED121]
gi|86165268|gb|EAQ66536.1| transcription elongation factor NusA [Marinomonas sp. MED121]
Length = 496
Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats.
Identities = 190/512 (37%), Positives = 320/512 (62%), Gaps = 22/512 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
++L + +AV+ EK + + V+ + ++ AA+ + + IRV I+ TGD + +R +
Sbjct: 4 DILLVVEAVSNEKDVPKQVIFEAVEIALASAAKRRFEEEAKIRVSIDQRTGDYTTYRQWD 63
Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+V E+ ++++ + +++ + IG + + + FGR+A Q+AKQVI+QKVREA
Sbjct: 64 IVADEDYAQPAHELTIDDSVEQNLGLAIGEIFEEEVESEAFGRIAAQTAKQVIVQKVREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER + + +KVG+ + G VK+V ++IVDLG + + V+ +D+ I+RE R DR+++
Sbjct: 124 ERAKVVARYSEKVGKPVHGQVKKVTRDSLIVDLGENAEAVLPKDQLIARETFRMNDRIRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ ++R + RG Q++LSR P FMV+LF +EVPEI +++++ +RDPG RAK+AV ++
Sbjct: 184 LLLEIRDDSRGAQLILSRNDPAFMVELFRLEVPEIAEEMIEIRGAARDPGLRAKIAVKTN 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+GACVGMRG+RVQAV EL E++DIV+W + A VINA+ PA V +V+DED
Sbjct: 244 DRRIDPIGACVGMRGARVQAVSNELNGERVDIVLWDDNPAQLVINAMSPAEVDSIVIDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V V + L+ AIGR GQNVRLAS LTGW ++++T E+ +Q++ ++ F+
Sbjct: 304 THSMQVAVNADNLAQAIGRNGQNVRLASNLTGWQLNVMTSEDAVAKQQEESDKLINLFVN 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++++D+ +A L EGFA +EE+A V + E+ I+ FDE+ E++ RA+E L + +
Sbjct: 364 SLDIDDDLAGQLADEGFATLEEIAYVPMEEMLDIDDFDEDLVNELRSRAKEALLNLALQA 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++++ E +E+L ++ G+D+ + + L GI TMEDLA SVDDL+ E
Sbjct: 424 EEQLEEATPAEDLLTMEGMDNHLALVLASKGICTMEDLAEQSVDDLIDIEE--------- 474
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
+++ S+I+ AR W + +
Sbjct: 475 --------INEERAASLIMTARAP--WFAESE 496
>gi|167570129|ref|ZP_02363003.1| transcription elongation factor NusA [Burkholderia oklahomensis
C6786]
Length = 491
Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats.
Identities = 211/508 (41%), Positives = 338/508 (66%), Gaps = 24/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR
Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ +I L AR++ P ++IG + +P+P ++FGR+ Q+AKQVI+QKVR+
Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPDVEIGDYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ + +ENLR GDRV++
Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLVPKENLRVGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V +
Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+
Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E ++ + ++ + F+
Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESALKQNEERDALRGLFIA 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L + I
Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTMAIAN 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +L S+ G+ S++ L E G++T +DLA +VD+L+ +
Sbjct: 424 EEKVETAAL--DLKSLDGVTSELLAKLAEQGVQTRDDLAELAVDELVDMT---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512
G ++ +++I+ AR W
Sbjct: 472 -------GMDEESAKALIMKAREH--WF 490
>gi|167856225|ref|ZP_02478960.1| translation initiation factor IF-2 [Haemophilus parasuis 29755]
gi|167852645|gb|EDS23924.1| translation initiation factor IF-2 [Haemophilus parasuis 29755]
Length = 510
Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats.
Identities = 198/525 (37%), Positives = 319/525 (60%), Gaps = 37/525 (7%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL-----------YGTMSDIRVEINPE 56
E+L A+AV+ EK + +D + + ++ + + G D+RV I+ +
Sbjct: 4 EILLAAEAVSNEKLLPKDAIFEALETALAISTKKKAAAEREDRKTGNGIDIDVRVVIDRK 63
Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116
TG + +R VVE+V ++T +I+L+ A+ DP+I +G V D + + F R+ +Q+A+Q
Sbjct: 64 TGAFTTYRRWLVVEKVHHHTREITLEAAQFEDPNIQLGDYVEDEIESIAFDRITMQTARQ 123
Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-------NSDGVIRRDE 169
VI K+REAER++ +F+ + G+I+ GTVK+V ++I++L ++ VI R++
Sbjct: 124 VITMKIREAERNKVIEQFRSEEGKIVIGTVKKVSRESIILELAGKKDDTTKAEAVIVRED 183
Query: 170 TISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAV 229
+ REN RPGDRV+ +Y ++ E +GPQ+ ++R P + +LF +EVPEI ++++K
Sbjct: 184 MLPRENFRPGDRVRGVLYAIKPESKGPQLFVTRAKPVMLQELFKLEVPEIGEEVIEIKGA 243
Query: 230 SRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN 289
SRDPGSRAK+AV S+D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A F+IN
Sbjct: 244 SRDPGSRAKIAVKSNDKRIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQFLIN 303
Query: 290 ALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
A+ PA V+ +V+DED +++ V L+ AIGR GQNVRLA+QLTGWT++++T +E
Sbjct: 304 AMAPADVSSIVVDEDNHSMDIAVEANALAQAIGRNGQNVRLATQLTGWTLNVMTTDELEK 363
Query: 350 NRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVE 408
Q + N+ FM A+ +DE AHLL+ EGF +EE+A V + E+ +I+G DE+ E
Sbjct: 364 KHQAEDNKVINLFMDALEIDEEFAHLLIEEGFTSLEEIAYVPVKELTAIDGLEDEDLVEE 423
Query: 409 IQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVD 468
+Q RA+ + + ++ +++ + ++L ++ G+D I L E I T+EDLA SVD
Sbjct: 424 LQVRAKNAITAKALAEEEALKQAHIEDKLLNLEGMDRHIAFKLAEKQITTLEDLAEQSVD 483
Query: 469 DLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
DL E ++ +I+ AR ++ W
Sbjct: 484 DLADIEE-----------------LTAEKAAELIMAAR-QICWFS 510
>gi|167836822|ref|ZP_02463705.1| transcription elongation factor NusA [Burkholderia thailandensis
MSMB43]
Length = 491
Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats.
Identities = 212/508 (41%), Positives = 337/508 (66%), Gaps = 24/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR
Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ +I L AR++ P +++G + +P+P ++FGR+ Q+AKQVI+QKVR+
Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPEVEVGDYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++
Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V +
Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+
Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ + FM
Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNEERDALRGLFMA 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +LV EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L + I
Sbjct: 364 RLDVDEEVADILVDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTMAIAN 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +L S+ G+ +++ L E G++T +DLA +VD+L+ +
Sbjct: 424 EEKVETAAL--DLKSLDGVTAELLTKLAEQGVQTRDDLAELAVDELVDMT---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512
G ++ +++I+ AR W
Sbjct: 472 -------GMEEEAAKALIMKAREH--WF 490
>gi|114331633|ref|YP_747855.1| transcription elongation factor NusA [Nitrosomonas eutropha C91]
gi|114308647|gb|ABI59890.1| NusA antitermination factor [Nitrosomonas eutropha C91]
Length = 490
Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats.
Identities = 208/508 (40%), Positives = 320/508 (62%), Gaps = 23/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + +A+A+EK++D+++V + + ++ AA+ D+RV I+ +TG+ FR
Sbjct: 4 EILLLVNALAHEKNVDKNIVFTALEMALASAAKKHARDDIDVRVSIDRDTGEFQCFRRWL 63
Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+V + VE+ QI+L A ++P G + + + F R+ Q+AKQVI QK+R+A
Sbjct: 64 IVADDVVEHPERQIALVEAVKQNPQSVPGEYTEELMEDVTFDRIGAQAAKQVIFQKIRDA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER++ +F ++ ++SG +KR++ GN I++ G + V+ RD+ IS ENLR GDRV++Y
Sbjct: 124 EREQNLNDFLERGEYLVSGVIKRMDRGNAIIEFGKIEAVLPRDQMISHENLRMGDRVRAY 183
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ + R RGPQ++LSRT F+VKLF +EVPEI GI++++A +RDPGSRAK+AV S+D
Sbjct: 184 LLKIDRAVRGPQLVLSRTSADFLVKLFELEVPEIEEGILEIRAAARDPGSRAKIAVKSND 243
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+ +DP+G CVGMRGSRVQAV EL E++DI+ WS D ATFV+NAL PA+++ +V+DED
Sbjct: 244 ARVDPIGTCVGMRGSRVQAVTGELAGERVDIIQWSDDQATFVVNALAPAVISSIVMDEDK 303
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
++V+V +E L+ AIGR GQNVRLAS+LTGW ++I+T EE +++ + FM+
Sbjct: 304 HSMDVVVDEENLAQAIGRGGQNVRLASELTGWQLNIMTVEESHEKSEEEAASICELFMEK 363
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425
++VDE + +LV EGF+ +EE+A + I E+ I+ FD ET E++ RAR L I +
Sbjct: 364 LDVDEEVGRILVDEGFSTLEEIAYIPIEEMLEIQEFDHETIEELRNRARNVLLTAAIVTE 423
Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485
+KI SE L ++ G+D + L GI T E+LA + DDL+ +
Sbjct: 424 EKIG--HASEALLALEGMDIDLVRELAAKGISTQEELADLAADDLVELT----------- 470
Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIE 513
G D+ +II AR W
Sbjct: 471 ------GVDLDRASKIIIKAREP--WFT 490
>gi|206559872|ref|YP_002230636.1| transcription elongation factor NusA [Burkholderia cenocepacia
J2315]
gi|198035913|emb|CAR51805.1| N utilization substance protein A [Burkholderia cenocepacia J2315]
Length = 491
Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats.
Identities = 213/508 (41%), Positives = 336/508 (66%), Gaps = 24/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR
Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ +I L AR++ P +++G V +P+P ++FGR+ Q+AKQVI+QKVR+
Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPDVEVGEYVEEPVPSIEFGRIGAQAAKQVILQKVRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++
Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V +
Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVIAY 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+
Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V + +L++AIGR GQNVRLA +LTGW I+I+T +E ++ + ++ + FM
Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLAGELTGWQINIMTPDESALKQGEERDRLRALFMA 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I
Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +L S+ GI ++ L E+ ++T +DLA +VD+L+ +
Sbjct: 424 EEKVENAAL--DLKSLDGITPELLAKLAEHAVQTRDDLAELAVDELVDMT---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512
G +D +++I+ AR W
Sbjct: 472 -------GMEEDAAKALIMKAREH--WF 490
>gi|264677930|ref|YP_003277837.1| NusA antitermination factor [Comamonas testosteroni CNB-2]
gi|299530199|ref|ZP_07043625.1| NusA antitermination factor [Comamonas testosteroni S44]
gi|262208443|gb|ACY32541.1| NusA antitermination factor [Comamonas testosteroni CNB-2]
gi|298721856|gb|EFI62787.1| NusA antitermination factor [Comamonas testosteroni S44]
Length = 495
Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats.
Identities = 203/512 (39%), Positives = 319/512 (62%), Gaps = 24/512 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
ELL + +A++ EK+++RDVV + ++ +A + LY DIRV I+ E+GD FR
Sbjct: 2 NRELLMLVEAISREKNVERDVVFGAVESALAQATKKLYQGEVDIRVSIDRESGDYDTFRR 61
Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
VV + ++N + L A DR P I IG + + + + GR+ +AKQVI+QK+
Sbjct: 62 WVVVSDDAGLQNPDAEEMLMDAEDRVPGIQIGEFIEEQIESLPIGRIGAMAAKQVILQKI 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182
R+AER+ EF + +I +GTVKR++ G++IV+ G +G ++R E I +ENLR GDRV
Sbjct: 122 RDAEREMLLNEFLARGEKIFTGTVKRMDKGDIIVESGRVEGRLKRGEMIPKENLRNGDRV 181
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
++ I +V RG +LLSR+ P+FMV+LF EVPEI G++++K+ +RD GSRAK+AV
Sbjct: 182 RAMIMEVDATLRGAPILLSRSAPEFMVELFRNEVPEIEQGLLEIKSCARDAGSRAKIAVL 241
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA V+ +V+D
Sbjct: 242 SHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVVD 301
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
E+ ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+ E + + + + F
Sbjct: 302 EEKHAMDVVVDEENLAIAIGRGGQNVRLASELTGWKINIMDAAESAQKQADESAVSRKLF 361
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
M+ ++VDE IA++L+ EGF +EE+A V + E+ IE FDEET E++ RA++ L +I
Sbjct: 362 MEKLDVDEEIANILIEEGFETLEEVAYVPLQEMLEIESFDEETVNELRSRAKDALLSQEI 421
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482
++ + + SE+L S+ G+ +++ L + + T +DLA ++D+L +
Sbjct: 422 AREENVSKA--SEDLVSLDGMTAELLDKLAQADVHTRDDLADLAIDELTEITGQ------ 473
Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
++ +++I+ AR W
Sbjct: 474 -----------TAEEAKALIMKAREH--WFTD 492
>gi|330722350|gb|EGH00207.1| Transcription termination protein NusA [gamma proteobacterium
IMCC2047]
Length = 503
Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats.
Identities = 207/519 (39%), Positives = 326/519 (62%), Gaps = 27/519 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS--DIRVEINPETGDISLFRL 65
E+L +A+AV+ EK + V++ + ++ A R YG DIRV I+ TGD +R
Sbjct: 4 EVLLVAEAVSNEKGVPESVIIEALELALATATRKRYGEDEQVDIRVTIDRRTGDYESYRR 63
Query: 66 LEVVEEVENY-----TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
V+ + + T ++ A+ +D S+++G V + + ++FGR+A Q+AKQVI+Q
Sbjct: 64 WTVISDDDMDIEFHDTMHLTPAEAKKKDASLEVGDVWEEQIENVEFGRIAAQTAKQVIVQ 123
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPG 179
KVREAER + ++D+VGE+++GTVK+V VI+DLGN+ + + RD I +E R
Sbjct: 124 KVREAERAKVVEAYRDRVGEVLNGTVKKVTRDQVIIDLGNNAEAQLTRDHLIPKEIFRMN 183
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
DR+++ + V E RGPQ+++SRT P+F+++LF +EVPEI +V+++A +RD G+RAK+
Sbjct: 184 DRLRALLVSVGEETRGPQLVVSRTAPEFLIELFKIEVPEIAEQVVEIRAAARDAGTRAKI 243
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV ++D IDPVGACVGMRGSRVQAV EL E+IDIV+W + A VINAL PA V +
Sbjct: 244 AVKTNDGRIDPVGACVGMRGSRVQAVSNELAGERIDIVLWDDNPAQMVINALAPAEVESI 303
Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
++DE+ ++V V + L++AIGR GQNVRLAS+LTGWTI+++T E+ ++++
Sbjct: 304 IMDEESNTMDVAVSGDNLAIAIGRSGQNVRLASELTGWTINVMTAEDAEAKQEEEMVAII 363
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+ FM+ ++V+E +A LLV EGF +EE+A V I E+ I+GFDEE ++ RA++ L
Sbjct: 364 ERFMERLDVEEDLAVLLVEEGFTSLEEIAYVPIEEMLEIDGFDEEIVEALRLRAKDVLLT 423
Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479
I ++++ +++L + G+D + L G+ TMEDLA +VDDLLG
Sbjct: 424 QAIASEEELEGTEPAQDLLEMDGMDKHLAYVLASKGVITMEDLAEQAVDDLLGIE----- 478
Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518
G +++ ++I+ AR W +E+ +
Sbjct: 479 ------------GLDEERAANLIMTARAP--WFAEEQES 503
>gi|167587339|ref|ZP_02379727.1| NusA antitermination factor [Burkholderia ubonensis Bu]
Length = 491
Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats.
Identities = 212/508 (41%), Positives = 334/508 (65%), Gaps = 24/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR
Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ +I L AR++ +++G + + +P ++FGR+ Q+AKQVI+QKVR+
Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKGDVEVGDYIEESVPSIEFGRIGAQAAKQVILQKVRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++
Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V +
Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+
Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ + FM
Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQGEERDRLRALFMA 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I
Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +L S+ GI ++ L E+G+ T +DLA +VD+L+ +
Sbjct: 424 EEKVENAAL--DLKSLDGITPELLSKLAEHGVATRDDLAELAVDELVDMT---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512
G +D +++I+ AR W
Sbjct: 472 -------GVEEDAAKALIMKAREH--WF 490
>gi|254297816|ref|ZP_04965269.1| transcription termination factor NusA [Burkholderia pseudomallei
406e]
gi|157807196|gb|EDO84366.1| transcription termination factor NusA [Burkholderia pseudomallei
406e]
Length = 487
Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats.
Identities = 209/507 (41%), Positives = 334/507 (65%), Gaps = 24/507 (4%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR V
Sbjct: 1 MLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWLV 60
Query: 69 VEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
V + ++ +I L AR++ P +++G + + +P ++FGR+ Q+AKQVI+QKVR+A
Sbjct: 61 VPDEAGLQEPDREILLFEAREQKPDVEVGDYIEESVPSIEFGRIGAQAAKQVILQKVRDA 120
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++Y
Sbjct: 121 EREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRAY 180
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + D
Sbjct: 181 IAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAYD 240
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+
Sbjct: 241 KRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEEK 300
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ + FM
Sbjct: 301 HSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNEERDALRGLFMAR 360
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425
++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L + I +
Sbjct: 361 LDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTMAIANE 420
Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485
+K+ + +L S+ G+ ++ L E G++T +DLA +VD+L+ +
Sbjct: 421 EKVETAAL--DLKSLDGVTPELLAKLAEQGVQTRDDLAELAVDELVDMT----------- 467
Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWI 512
G ++ +++I+ AR W
Sbjct: 468 ------GMEEEAAKALIMKAREH--WF 486
>gi|219870469|ref|YP_002474844.1| transcription elongation factor NusA [Haemophilus parasuis SH0165]
gi|219690673|gb|ACL31896.1| transcription elongation factor NusA [Haemophilus parasuis SH0165]
Length = 510
Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats.
Identities = 197/525 (37%), Positives = 318/525 (60%), Gaps = 37/525 (7%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL-----------YGTMSDIRVEINPE 56
E+L A+AV+ EK + +D + + ++ + + G D+RV I+ +
Sbjct: 4 EILLAAEAVSNEKLLPKDAIFEALETALAISTKKKAAAEREDRKTGNGIDIDVRVVIDRK 63
Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116
TG + +R VVE+V ++T +I+L+ A+ DP+I +G V D + + F R+ +Q+A+Q
Sbjct: 64 TGAFTTYRRWLVVEKVHHHTREITLEAAQFEDPNIQLGDYVEDEIESIAFDRITMQTARQ 123
Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-------NSDGVIRRDE 169
VI K+REAER++ +F+ + G+I+ GTVK+V ++I++L ++ VI R++
Sbjct: 124 VITMKIREAERNKVIEQFRSEEGKIVIGTVKKVSRESIILELAGKKDDTTKAEAVIVRED 183
Query: 170 TISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAV 229
+ REN RPGDRV+ +Y ++ E +GPQ+ ++R P + +LF +EVPEI ++++K
Sbjct: 184 MLPRENFRPGDRVRGVLYAIKPESKGPQLFVTRAKPVMLQELFKLEVPEIGEEVIEIKGA 243
Query: 230 SRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN 289
SRDPGSRAK+AV S+D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A F+IN
Sbjct: 244 SRDPGSRAKIAVKSNDKRIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQFLIN 303
Query: 290 ALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
A+ PA V+ +V+DED +++ V L+ AIGR GQNVRLA+QLTGWT++++T +E
Sbjct: 304 AMAPADVSSIVVDEDNHSMDIAVEANALAQAIGRNGQNVRLATQLTGWTLNVMTTDELEK 363
Query: 350 NRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVE 408
Q + N+ FM A+ +DE AHLL+ EGF +EE+A V + E+ +I+G DE+ E
Sbjct: 364 KHQAEDNKVINLFMDALEIDEEFAHLLIEEGFTSLEEIAYVPVKELTAIDGLEDEDLVEE 423
Query: 409 IQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVD 468
+Q RA+ + + ++ +++ + ++L ++ G+D I L E I T+EDLA VD
Sbjct: 424 LQVRAKNAITAKALAEEEALKQAHIEDKLLNLEGMDRHIAFKLAEKQITTLEDLAEQGVD 483
Query: 469 DLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
DL E ++ +I+ AR ++ W
Sbjct: 484 DLADIEE-----------------LTAEKAAELIMAAR-QICWFS 510
>gi|83719213|ref|YP_443082.1| transcription elongation factor NusA [Burkholderia thailandensis
E264]
gi|167620248|ref|ZP_02388879.1| transcription elongation factor NusA [Burkholderia thailandensis
Bt4]
gi|257139311|ref|ZP_05587573.1| transcription elongation factor NusA [Burkholderia thailandensis
E264]
gi|83653038|gb|ABC37101.1| N utilization substance protein A [Burkholderia thailandensis E264]
Length = 491
Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats.
Identities = 210/508 (41%), Positives = 335/508 (65%), Gaps = 24/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR
Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ +I L AR++ P +++G + +P+P ++FGR+ Q+AKQVI+QKVR+
Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPGVEVGDYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++
Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V +
Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+
Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ + FM
Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNEERDALRGLFMA 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L + I
Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTMAIAN 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +L S+ G+ ++ L E ++T +DLA +VD+L+ +
Sbjct: 424 EEKVETAAL--DLKSLDGVTPELLAKLAEQSVQTRDDLAELAVDELVDMT---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512
G ++ +++I+ AR W
Sbjct: 472 -------GMEEEAAKALIMKAREH--WF 490
>gi|304414228|ref|ZP_07395596.1| transcription termination/antitermination L factor [Candidatus
Regiella insecticola LSR1]
gi|304283442|gb|EFL91838.1| transcription termination/antitermination L factor [Candidatus
Regiella insecticola LSR1]
Length = 506
Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats.
Identities = 187/521 (35%), Positives = 307/521 (58%), Gaps = 30/521 (5%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EKS+ R+ + + ++ A + + ++RV I+ +TGD FR
Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALEIALATATKKKHEQEIEVRVNIDRKTGDFETFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSI-----------DIGGVVSDPLPPMDFGRVAVQSA 114
+VV EV T +I+L+ A++ +I + D + + F R+ Q+A
Sbjct: 62 WKVVSEVVMPTREITLEAAQEISKEEAQQNTPISTESEIPTYIEDQIKSVVFDRITTQTA 121
Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISR 173
KQVI+QKVREAER +F+++ G+I++ TVK+V ++I+DLGN+ +G+I +++ + R
Sbjct: 122 KQVIVQKVREAERAVVIEQFREQEGKIVTATVKKVSRESIILDLGNNAEGIIGQEDMLPR 181
Query: 174 ENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDP 233
EN+RPGDR++ +Y++R E RGPQ+ +SR+ P+ +++LF +EVPEI ++++KA RDP
Sbjct: 182 ENIRPGDRIRGILYEIRPEARGPQLFISRSRPEMLIELFRIEVPEIDEELIEIKAAIRDP 241
Query: 234 GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP 293
SRAK+AV ++D IDP+GACVGMRG+RVQAV EL E+IDIV+W + A FV+NA+ P
Sbjct: 242 ASRAKIAVKTNDKRIDPIGACVGMRGARVQAVSNELGGERIDIVLWDDNPAQFVLNAMAP 301
Query: 294 AIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353
A V +V+DED + + V + + AIGR GQNVRL SQL+GW ++++T E Q
Sbjct: 302 AEVASIVVDEDAKTMNIAVEEGNSAQAIGRNGQNVRLVSQLSGWELNVMTINELKEKCQA 361
Query: 354 DFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413
+ F++ + +DE A +LV F+ +EELA V SE+ I+ FD++ E++ RA
Sbjct: 362 ETRTAIDMFIEHLEIDEECATVLVEAEFSSLEELAYVPESELPEIDSFDKKRLQELRDRA 421
Query: 414 REYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473
+ L + + ++ + +++L ++ +D + L G+ T+EDLA V DL
Sbjct: 422 QNVLTTLALKKEESFGDNKPADDLLNLASLDRDMAFKLAACGVCTLEDLAEQGVSDLADI 481
Query: 474 SENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
E ++ +I+ AR + W
Sbjct: 482 EE-----------------LDDEKAGKLIMAAR-NICWFGD 504
>gi|300113656|ref|YP_003760231.1| transcription termination factor NusA [Nitrosococcus watsonii
C-113]
gi|299539593|gb|ADJ27910.1| transcription termination factor NusA [Nitrosococcus watsonii
C-113]
Length = 506
Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats.
Identities = 215/524 (41%), Positives = 329/524 (62%), Gaps = 23/524 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + DAV+ EK ++++V+ + ++ A R Y ++V I+ TGD FR
Sbjct: 2 NKEILMVVDAVSNEKGVNKEVIFQAIEAALAMATRKRYQEDIAVQVVIDRTTGDYQSFRS 61
Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
EV+E+ +E Q+ L A RD S ++GGVV +P+ + FGR+A Q+AKQVI+QKV
Sbjct: 62 WEVIEDEAELEAPERQMCLSEACKRDSSAEVGGVVKEPMESIAFGRIAAQTAKQVIVQKV 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
REAER + ++ +V E++ G VKR++ GN+I+DLG++ +G+I ++E I RE +RPGDR
Sbjct: 122 REAERAKVAAAYQGRVKEMVMGVVKRMDRGNIILDLGDNAEGIIPQEEMIPREAVRPGDR 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++ Y+ +VR E RGPQ+++SRT P+ +++LF +EVPEI ++VK +RDPG RAK+AV
Sbjct: 182 LRGYLKEVRAEGRGPQLVISRTAPELLIELFKLEVPEINENRIEVKGAARDPGLRAKIAV 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
++++ IDPVGACVGMRGSRVQAV EL E++DIV+W D A FVINA+ PA +V+
Sbjct: 242 KTNETRIDPVGACVGMRGSRVQAVSNELAGERVDIVLWDEDPARFVINAMAPAEAVSIVV 301
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DE+ ++V V + LS AIGR GQN+RLASQLTGW ++++TE+E + + Q
Sbjct: 302 DEERHSMDVAVAEGNLSQAIGRGGQNIRLASQLTGWELNVMTEQEAEEKGESEAKSLQQM 361
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM+ ++VDE +A +LV EGF+ +EE+A V EI +IE FD + E++ RAR+ L
Sbjct: 362 FMEQLDVDEEVAAILVHEGFSSIEEMAYVPEQEILAIEEFDSQIVQELRNRARDVLLTRA 421
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
I ++ I + + +EL + +D + AL GI T E+LA +VD+L+
Sbjct: 422 IANEETIETVQLDQELLDMEEVDHGLASALASKGITTKENLAEQAVDELMEIE------- 474
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525
G +++ +I+ AR W E+ +DE +
Sbjct: 475 ----------GMKREKAARLIMAARES--WFADEEQSDETEERQ 506
>gi|91774422|ref|YP_544178.1| transcription elongation factor NusA [Methylobacillus flagellatus
KT]
gi|91708409|gb|ABE48337.1| NusA antitermination factor [Methylobacillus flagellatus KT]
Length = 488
Score = 445 bits (1144), Expect = e-123, Method: Composition-based stats.
Identities = 208/508 (40%), Positives = 325/508 (63%), Gaps = 25/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A+EK++ + V+ + + ++ A + + +D+RVEI+ ++G+ FR +
Sbjct: 4 EILLLVDALAHEKNVAKTVIFTALELALASATKKRFTEDADVRVEIDRDSGEYRSFRRWQ 63
Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVE +EN QI++ AR +G + +PL ++FGR+ Q+AKQVI+QKVREA
Sbjct: 64 VVEADALENPAAQIAVDDARA--EGFAVGDYIEEPLESVEFGRIGAQAAKQVILQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER++ +F + +++G +KR+E GN I+++G + V+ R++ I +ENLR GDRV++Y
Sbjct: 122 EREQILDDFLARKEHLVTGVIKRMEKGNAIIEVGRLESVLPREQMIPKENLRVGDRVRAY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ + R RGPQ++LSR P+F++KLF +EVPEI G++++K+ +RDPG R+K+AV S+D
Sbjct: 182 LSRIERSGRGPQLILSRVAPEFLIKLFELEVPEIEEGLLEIKSAARDPGLRSKIAVKSND 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DPVG CVGMRGSRVQAV EL E++DIV+WS D A FVINA+ PA V+ +V+DED
Sbjct: 242 QRLDPVGTCVGMRGSRVQAVTGELAGERVDIVLWSMDPAQFVINAMAPAEVSGIVVDEDA 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
++VIV +EQL+ AIGR GQNVRLAS+LTGWT++I+TEEE + +++ + Q F++
Sbjct: 302 HSMDVIVDEEQLAQAIGRNGQNVRLASELTGWTLNILTEEEAAKKSEEEHSSILQLFVEK 361
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425
++VDE +A +LV EGF+ +EE+A V ++E++ IE FDE+T E++ RAR L I +
Sbjct: 362 LDVDEEVADILVQEGFSTLEEIAYVPLAEMSEIEAFDEDTINELRKRARAALLTEAIAKE 421
Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485
+K E SE+L + G+D L G+ TM D
Sbjct: 422 EKAGEA--SEDLLHMEGMDEATARTLAGKGVATM-----------------DDLADLAVD 462
Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIE 513
+ G ++ + +I+ AR W
Sbjct: 463 DLVELTGMDVERAKQLIMTARAP--WFA 488
>gi|238027585|ref|YP_002911816.1| transcription elongation factor NusA [Burkholderia glumae BGR1]
gi|237876779|gb|ACR29112.1| Transcription elongation factor NusA [Burkholderia glumae BGR1]
Length = 491
Score = 444 bits (1143), Expect = e-122, Method: Composition-based stats.
Identities = 214/508 (42%), Positives = 338/508 (66%), Gaps = 24/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV+I+ E+G+ FR
Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVQIDRESGEHETFRRWL 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ +I L AR++ P +D+G + + +P ++FGR+ Q+AKQVI+QKVR+
Sbjct: 64 VVPDEAGLQEPDREILLFEAREQQPGVDVGDYIEESVPSIEFGRIGAQAAKQVILQKVRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR DRV++
Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVSDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V +
Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+
Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E ++ + ++ + FM
Sbjct: 304 KHSMDVVVDESELAVAIGRSGQNVRLASELTGWQINIMTPDESALKQNEERDRLRGLFMA 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +L+ EGF +EE+A V ++E+ IE FDEET E++ RAR+ L + I
Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEETVHELRNRARDALLTMAIAN 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +L S+ G+ S++ L ENG++T +DLA +VD+L+ +
Sbjct: 424 EEKVENAAL--DLKSLEGMTSELLAKLAENGVQTRDDLAELAVDELVEMT---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512
G ++ +++I+ AR W
Sbjct: 472 -------GVEEEAAKALIMKAREH--WF 490
>gi|118594129|ref|ZP_01551476.1| NusA antitermination factor [Methylophilales bacterium HTCC2181]
gi|118439907|gb|EAV46534.1| NusA antitermination factor [Methylophilales bacterium HTCC2181]
Length = 488
Score = 444 bits (1143), Expect = e-122, Method: Composition-based stats.
Identities = 202/506 (39%), Positives = 328/506 (64%), Gaps = 21/506 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A+EK++ RD++ + + ++ A + + DIRVEI+ E+G+ FR
Sbjct: 4 EILLLVDALAHEKNVARDIIFTALELALASATKKKFEADVDIRVEIDKESGEYESFRCWT 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
+VE+ + L DR +++G V+ + + ++FGR+ Q+AKQVI+QKVREAER
Sbjct: 64 IVEDELLEIPEAELSPTDDRAKDLEVGDVIKEAIDSVEFGRIGAQAAKQVILQKVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
++ +F + +++SG ++R+E GN I+++G D V+ RD I +ENLR GDRV++ +
Sbjct: 124 EQILNDFLARDEKLVSGQIRRMERGNAIIEVGRLDAVLPRDHMIPKENLRVGDRVRAILS 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
+ RGPQ++LSRT P+F+++LF +EVPEI G++++ + SRDPG R+K+AV ++D
Sbjct: 184 KIETGMRGPQLILSRTAPEFLIRLFELEVPEIEEGLLEIMSASRDPGLRSKIAVKANDQR 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVG CVGMRGSRVQAV EL E++DIV+WS + A FVINA+ PA V+ +V+DED
Sbjct: 244 LDPVGTCVGMRGSRVQAVTGELAGERVDIVLWSIEPAQFVINAMAPAEVSSIVVDEDKHS 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
++++V ++QL+ AIGR GQN+RLAS+LTGW ++I+TEEE ++++ +Q F++ ++
Sbjct: 304 MDLVVVEDQLAQAIGRNGQNIRLASELTGWELNILTEEESDQKNKEEYTSASQLFIEKLD 363
Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427
VDE +A +LV EGF+ +EE+A V + E+ IE FDE+T E++ RA + I ++
Sbjct: 364 VDEDVADILVQEGFSSIEEVAYVPLEEMVQIEAFDEDTVNELRSRASAAILTAAIAKEES 423
Query: 428 IRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGF 487
+ + +E+L S+ G+D + + GI TMEDLA SVD+LL
Sbjct: 424 VVD--PAEDLKSMDGMDIDMAKLMASKGIVTMEDLAELSVDELLEL-------------- 467
Query: 488 LSSLGTPKDQVESMIIHARYKMGWIE 513
+ +++ +++I+ AR W
Sbjct: 468 ---VKIDEEKAKTLIMTARAP--WFA 488
>gi|152978792|ref|YP_001344421.1| transcription elongation factor NusA [Actinobacillus succinogenes
130Z]
gi|150840515|gb|ABR74486.1| NusA antitermination factor [Actinobacillus succinogenes 130Z]
Length = 511
Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats.
Identities = 202/526 (38%), Positives = 317/526 (60%), Gaps = 37/526 (7%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-----------GTMSDIRVEINPE 56
E+L A+AV+ EK++ ++V+ + +I + + + + D+RV I+P+
Sbjct: 4 EILLAAEAVSNEKALPKEVIFEALEAAIALSTKKKHAQKQERLGVDKPSEIDVRVAIDPK 63
Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116
TG+ FR VVEEV N T +I+L+ AR DP+I +G VV D + + F R+ +Q+A+Q
Sbjct: 64 TGEFDTFRRWTVVEEVVNPTREITLEAARLDDPAIQLGDVVEDQIESVAFDRITMQTARQ 123
Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-------GNSDGVIRRDE 169
VI K+R+AER + +F + G+I+ GTVK+V +++++L ++ VI R++
Sbjct: 124 VISTKIRDAERSKVVEQFLSEEGKIVIGTVKKVNRESIVLELLGNKEDPAKAEAVIARED 183
Query: 170 TISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAV 229
I REN RPGDRV+ +Y V E +G Q+ ++R+ P + +LF +EVPEI I+++K
Sbjct: 184 MIPRENFRPGDRVRGVLYKVSPESKGAQLFVTRSKPIMLEELFRLEVPEIGEQIIEIKGS 243
Query: 230 SRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN 289
+RD GSRAK+AV SSD IDPVGACVGMRGSRVQ++ EL E++DIV+W + A +VIN
Sbjct: 244 ARDAGSRAKIAVKSSDKRIDPVGACVGMRGSRVQSITNELGGERVDIVLWDENPAQYVIN 303
Query: 290 ALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
A+ PA V+ +V+DED +++ V L+ AIGR GQNVRLA+QLTGWT++++T EE +
Sbjct: 304 AMAPADVSSIVVDEDNHSMDIAVEASNLAQAIGRNGQNVRLATQLTGWTLNVMTTEELAQ 363
Query: 350 NRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVE 408
Q + N+ FM A+ +DE A +LV EGF +EELA V +SE+ +I+G DE+ E
Sbjct: 364 KHQAEDNKILNLFMTALEIDEDFAQILVDEGFTKLEELAYVSVSELTAIDGLEDEDLVEE 423
Query: 409 IQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVD 468
+Q RA++ + + +K + + + L ++ G++ + L E I T+E+LA VD
Sbjct: 424 LQTRAKDAITAAALAEEKALENAQIEDRLLNLEGMERHLAFKLAEKQITTLEELAEQGVD 483
Query: 469 DLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
DL E ++ +I+ AR + W +
Sbjct: 484 DLADIEE-----------------LSAEKAADLIMAAR-NICWFGE 511
>gi|77165586|ref|YP_344111.1| transcription elongation factor NusA [Nitrosococcus oceani ATCC
19707]
gi|76883900|gb|ABA58581.1| NusA antitermination factor [Nitrosococcus oceani ATCC 19707]
Length = 506
Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats.
Identities = 212/524 (40%), Positives = 328/524 (62%), Gaps = 23/524 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + DAV+ EK ++++V+ + ++ A R Y ++V I+ TGD FR
Sbjct: 2 NKEILMVVDAVSNEKGVNKEVIFQAIEAALAMATRKRYQEDIAVQVVIDRTTGDYQSFRS 61
Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
EV+E+ ++ Q+ L A RDP+ ++ G V +P+ + FGR+A Q+AKQVI+QKV
Sbjct: 62 WEVIEDEAELDAPERQMHLSEACKRDPNAEVSGFVKEPMESIAFGRIAAQTAKQVIVQKV 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
REAER + ++ ++ E++ G VKR++ GN+I+DLG++ +G++ ++E I RE +RPGDR
Sbjct: 122 REAERAKVVAAYRGRIKEMVMGVVKRMDRGNIILDLGDNAEGIVPQEEMIPREAVRPGDR 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++ Y+ +VR E RGPQ+++SRT P+ +++LF +EVPEI ++VK +RDPG RAK+AV
Sbjct: 182 LRGYLKEVRAEGRGPQLVISRTAPELLIELFKLEVPEINENRIEVKGAARDPGLRAKIAV 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
++++ IDPVGACVGMRGSRVQAV EL E++DIV+W D A FVINA+ PA V +V+
Sbjct: 242 KTNETRIDPVGACVGMRGSRVQAVSNELAGERVDIVLWDEDPARFVINAMAPAEVASIVV 301
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DE+ ++V V + LS AIGR GQN+RLASQLTGW ++++TE+E + + Q
Sbjct: 302 DEERHSMDVAVAEGNLSQAIGRGGQNIRLASQLTGWELNVMTEQEAEEKGESEAKSLQQM 361
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM+ ++VDE +A +LV EGF+ +EE+A V EI +IE FD + E++ RAR+ L
Sbjct: 362 FMEQLDVDEEVAAILVHEGFSSIEEMAYVPEQEILAIEEFDSQIVQELRNRARDVLLTRA 421
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
I ++ I + + +EL + ID + AL GI T E+LA +VD+L+
Sbjct: 422 IANEETIETVQLDQELLDMEEIDHGLASALASKGIVTKENLAEQAVDELMEIE------- 474
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525
G +++ +I+ AR W EK +E +
Sbjct: 475 ----------GMNREKAARLIMAARES--WFVSEKQDEETEERQ 506
>gi|312796186|ref|YP_004029108.1| N utilization substance protein A [Burkholderia rhizoxinica HKI
454]
gi|312167961|emb|CBW74964.1| N utilization substance protein A [Burkholderia rhizoxinica HKI
454]
Length = 491
Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats.
Identities = 209/508 (41%), Positives = 333/508 (65%), Gaps = 24/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++++DVV + + ++ A + L+ DIRV I+ E+G+ FR
Sbjct: 4 EVLMLVDALAREKNVNKDVVFAALEAALASATKKLFDEDVDIRVSIDRESGEHETFRRWR 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
+V + ++ +I L AR++DP + G + +P+P ++FGR+ Q+AKQVI+QKVR+
Sbjct: 64 IVPDEAGLQQPDQEILLFEAREQDPDAQLDGYIEEPIPSIEFGRIGAQAAKQVILQKVRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ +F ++ +I++G+VKR++ GN++V+ G + ++RRD+ I +ENLR GDRV++
Sbjct: 124 AEREQILNDFLERGEKIMTGSVKRLDKGNLVVESGRVEALLRRDQLIPKENLRIGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI V R RGPQ+ LSRT P+F++KLF EVPEI G++++K+ +RDPG RAK+AV +
Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEFEVPEIEQGLLEIKSAARDPGVRAKIAVVAY 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVG+RGSRVQAV EL E +DIV+WS D A FVI AL PA V +V+DE+
Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENVDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ FM+
Sbjct: 304 KHAMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAEKQSQERKVLRDLFME 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I
Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + L S+ G+D ++ L E+ I T +DLA +VD+L+ +
Sbjct: 424 EEKVENASLE--LKSLEGMDRELLAKLAEHEIHTRDDLAELAVDELVEMT---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512
G ++ +++I+ AR W
Sbjct: 472 -------GIDEEAAKALIMKAREH--WF 490
>gi|15836839|ref|NP_297527.1| transcription elongation factor NusA [Xylella fastidiosa 9a5c]
gi|9105045|gb|AAF83047.1|AE003877_2 N utilization substance protein A [Xylella fastidiosa 9a5c]
Length = 503
Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats.
Identities = 199/506 (39%), Positives = 321/506 (63%), Gaps = 22/506 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI--RVEINPETGDISLFRL 65
ELL + D VA EK + R ++ + ++ AA+ Y DI RV I+ ++G+ +R
Sbjct: 4 ELLLVVDVVANEKGVPRQIIFDAIEVALASAAKKRY-QDRDILTRVTIDQKSGNYETYRR 62
Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
EVV + +E+ QI L A D +++G + + + DFGR++ Q+AKQVI+Q+V
Sbjct: 63 WEVVADDVVMESPERQIRLMDALDEADGVEVGDYIEEQIENPDFGRISAQAAKQVIVQRV 122
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDR 181
REAER + +K++VGE+++G VKRVE GN+ VDLG ++ I +D+ I R+ +RPGDR
Sbjct: 123 REAERQQVVDAWKNRVGELVTGVVKRVERGNIYVDLGGGTEAFIPKDKGIPRDVIRPGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V+ Y+ +VR E RGPQ+ +SR+ P+FM++LF +EVPE+ G+V++K +RDPG RAK+AV
Sbjct: 183 VRGYLAEVRSESRGPQLFISRSAPEFMIELFKLEVPEVGQGLVEIKGCARDPGDRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
+ D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++
Sbjct: 243 IAHDNRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSIIV 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DE+ +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T E+ + + + +
Sbjct: 303 DEEKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTAEQVAAKSEAEQVAARRL 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM+ + VDE IA +LV EGF +EE+A V + E+ ++EGFDE+ E++ RAR+ L
Sbjct: 363 FMERLEVDEEIASILVMEGFNTIEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNAA 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ ++ + G + +L + G+D AL +G++T EDL+ + D+++ +
Sbjct: 423 LAEEEGLEHSGPAPDLLELNGMDEITAHALAAHGVRTSEDLSDLAADEIVEFDIQ----- 477
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARY 507
G + +I+ AR
Sbjct: 478 ----------GMTVQRAAVLILAARA 493
>gi|28198121|ref|NP_778435.1| transcription elongation factor NusA [Xylella fastidiosa Temecula1]
gi|71898654|ref|ZP_00680824.1| Transcription termination factor NusA:Transcription termination
factor NusA, C-terminal duplication [Xylella fastidiosa
Ann-1]
gi|182680749|ref|YP_001828909.1| transcription elongation factor NusA [Xylella fastidiosa M23]
gi|28056181|gb|AAO28084.1| N utilization substance protein A [Xylella fastidiosa Temecula1]
gi|71731601|gb|EAO33662.1| Transcription termination factor NusA:Transcription termination
factor NusA, C-terminal duplication [Xylella fastidiosa
Ann-1]
gi|182630859|gb|ACB91635.1| NusA antitermination factor [Xylella fastidiosa M23]
gi|307579213|gb|ADN63182.1| transcription elongation factor NusA [Xylella fastidiosa subsp.
fastidiosa GB514]
Length = 503
Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats.
Identities = 199/506 (39%), Positives = 319/506 (63%), Gaps = 22/506 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI--RVEINPETGDISLFRL 65
ELL + D VA EK + R ++ + ++ AA+ Y DI RV I+ + G+ +R
Sbjct: 4 ELLLVVDVVANEKGVPRQIIFDAIEVALASAAKKRY-QDRDILTRVTIDQKNGNYETYRR 62
Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
EVV + +E+ QI L A D +++G + + + DFGR++ Q+AKQVI+Q+V
Sbjct: 63 WEVVADDVVMESPERQIRLMDALDEADGVEVGDYIEEQIENPDFGRISAQAAKQVIVQRV 122
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDR 181
REAER + +K++VGE+++G VKRVE GN+ VDLG ++ I +D+ I R+ +RPGDR
Sbjct: 123 REAERQQVVDAWKNRVGELVTGVVKRVERGNIYVDLGGGTEAFIPKDKGIPRDVIRPGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V+ Y+ +VR E RGPQ+ +SR+ P+FM++LF +EVPE+ G+V++K +RDPG RAK+AV
Sbjct: 183 VRGYLAEVRSESRGPQLFISRSAPEFMIELFKLEVPEVGQGLVEIKGCARDPGDRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
+ D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++
Sbjct: 243 IAHDNRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSIIV 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DE+ +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T E+ + + + +
Sbjct: 303 DEERHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTAEQVAAKSEAEQLAARRL 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM + VDE IA +LV EGF +EE+A V + E+ ++EGFDE+ E++ RAR+ L
Sbjct: 363 FMDRLEVDEEIASILVMEGFNTIEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNAA 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ ++ + G + +L + G+D AL +G++T EDL+ + D+++ +
Sbjct: 423 LAEEEVLEHSGPAPDLLELNGMDEITAHALAAHGVRTSEDLSDLAADEIVEFDIQ----- 477
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARY 507
G + +I+ AR
Sbjct: 478 ----------GMTVQRAAVLILAARA 493
>gi|78485466|ref|YP_391391.1| NusA antitermination factor [Thiomicrospira crunogena XCL-2]
gi|78363752|gb|ABB41717.1| NusA antitermination factor [Thiomicrospira crunogena XCL-2]
Length = 495
Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats.
Identities = 197/511 (38%), Positives = 308/511 (60%), Gaps = 24/511 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + + ++ EK ++++++ + ++ A R + D RV I+ TGD FR E
Sbjct: 4 EVLAVVEIMSNEKGVEKEIIFEAIEAALATATRKSHNDEIDARVSIDRHTGDYETFRRWE 63
Query: 68 VVEEVENYTCQ----ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
V+E+ I A D +P I+ G + +P+ ++FGR+ Q+AKQVIIQKVR
Sbjct: 64 VIEDDVEIEDHVGWYIRHMDAVDIEPHIEPGEFIEEPMESIEFGRIGAQTAKQVIIQKVR 123
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182
EAER + E+ ++GEI++G VKR++ G+VI+DLG++ D VI R E I+REN + GDRV
Sbjct: 124 EAERKKVVEEYSKRIGEILTGQVKRIDRGDVILDLGDNVDAVIPRSELINRENFKMGDRV 183
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
++Y+ DV RGPQ+ +SR + +++LF +EVPEI + ++ + + +RD G RAK+AV
Sbjct: 184 RAYVQDVSFRPRGPQIFMSRACKEMLMELFKIEVPEIGDDLIDIMSAARDVGLRAKVAVR 243
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
++D +DP+GACVGMRG RVQAV EL E+IDI++W + A FVINA+ PA VT +++D
Sbjct: 244 ANDPRLDPIGACVGMRGGRVQAVTNELNGERIDIILWDSNDAQFVINAMAPAEVTSIMVD 303
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
ED +++ V EQLS AIG+ GQN+RLA++LTGW +++++E + + + + + F
Sbjct: 304 EDKHTMDLAVDDEQLSQAIGKNGQNIRLATELTGWELNVMSETDMAAKHETESKGQMDLF 363
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
+ + VDE +A +LVAEGF +EE+A V +E+ IEGFDEE ++ RA++ L I
Sbjct: 364 VNGLEVDEELAEVLVAEGFTTLEEVAYVPAAEMLEIEGFDEEIVAALKERAKDALLTQAI 423
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482
++K +++L + G+ ++ L GI T EDLA D+LL E
Sbjct: 424 ANEEKTAMAEPAQDLLDLEGMTEEMAKTLASKGIITQEDLAELGTDELLEIVE------- 476
Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
D +I+ AR W E
Sbjct: 477 ----------MDADAASELILKARAP--WFE 495
>gi|71276363|ref|ZP_00652640.1| Transcription termination factor NusA:Transcription termination
factor NusA, C-terminal duplication [Xylella fastidiosa
Dixon]
gi|71901435|ref|ZP_00683525.1| Transcription termination factor NusA:Transcription termination
factor NusA, C-terminal duplication [Xylella fastidiosa
Ann-1]
gi|170729432|ref|YP_001774865.1| transcription elongation factor NusA [Xylella fastidiosa M12]
gi|71162825|gb|EAO12550.1| Transcription termination factor NusA:Transcription termination
factor NusA, C-terminal duplication [Xylella fastidiosa
Dixon]
gi|71728806|gb|EAO30947.1| Transcription termination factor NusA:Transcription termination
factor NusA, C-terminal duplication [Xylella fastidiosa
Ann-1]
gi|167964225|gb|ACA11235.1| N utilization substance protein A [Xylella fastidiosa M12]
Length = 503
Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats.
Identities = 199/506 (39%), Positives = 319/506 (63%), Gaps = 22/506 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI--RVEINPETGDISLFRL 65
ELL + D VA EK + R ++ + ++ AA+ Y DI RV I+ + G+ +R
Sbjct: 4 ELLLVVDVVANEKGVPRQIIFDAIEVALASAAKKRY-QDRDILTRVTIDQKNGNYETYRR 62
Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
EVV + +E+ QI L A D +++G + + + DFGR++ Q+AKQVI+Q+V
Sbjct: 63 WEVVADDVVMESPERQIRLMDALDEADGVEVGDYIEEQIENPDFGRISAQAAKQVIVQRV 122
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDR 181
REAER + +K++VGE+++G VKRVE GN+ VDLG ++ I +D+ I R+ +RPGDR
Sbjct: 123 REAERQQVVDAWKNRVGELVTGVVKRVERGNIYVDLGGGTEAFIPKDKGIPRDVIRPGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V+ Y+ +VR E RGPQ+ +SR+ P+FM++LF +EVPE+ G+V++K +RDPG RAK+AV
Sbjct: 183 VRGYLAEVRSESRGPQLFISRSAPEFMIELFKLEVPEVGQGLVEIKGCARDPGDRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
+ D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++
Sbjct: 243 IAHDNRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSIIV 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DE+ +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T E+ + + + +
Sbjct: 303 DEERHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTAEQVAAKSEAEQVAARRL 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM + VDE IA +LV EGF +EE+A V + E+ ++EGFDE+ E++ RAR+ L
Sbjct: 363 FMDRLEVDEEIASILVMEGFNTIEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNAA 422
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ ++ + G + +L + G+D AL +G++T EDL+ + D+++ +
Sbjct: 423 LAEEEVLEHSGPAPDLLELNGMDEITAHALAAHGVRTSEDLSDLAADEIVEFDIQ----- 477
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARY 507
G + +I+ AR
Sbjct: 478 ----------GMTVQRAAVLILAARA 493
>gi|323525724|ref|YP_004227877.1| NusA antitermination factor [Burkholderia sp. CCGE1001]
gi|323382726|gb|ADX54817.1| NusA antitermination factor [Burkholderia sp. CCGE1001]
Length = 491
Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats.
Identities = 214/508 (42%), Positives = 335/508 (65%), Gaps = 24/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++D+DVV + + ++ A++ L+ +DIRV I+ E+G+ FR +
Sbjct: 4 EVLMLVDALAREKNVDKDVVFAALEAALASASKKLFEEDADIRVHIDRESGEHETFRRWK 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ +I L AR++ P I I + +P+P ++FGR+ Q+AKQVI+QKVR+
Sbjct: 64 VVPDEAGLQEPDQEILLFEAREQKPEIQIDDYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ +F ++ I++G+VKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++
Sbjct: 124 AEREQILNDFLERGEHIMTGSVKRLDKGNFIVETGRVEALLRRDQLIPKENLRVGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V +
Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVG+RGSRVQAV EL E +DIV+WS D A FVI AL PA V +V+DE+
Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENVDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ FM
Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNQERGVLRDLFMA 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I
Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ V+ +L S+ G+D+ + L E+ I+T ++LA +VD+L+ +
Sbjct: 424 EEKVE--NVALDLKSLDGMDADLLAKLAEHQIQTRDELAELAVDELVEMT---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512
G +D +++I+ AR W
Sbjct: 472 -------GMEEDAAKALIMKAREH--WF 490
>gi|219682291|ref|YP_002468675.1| transcription elongation factor NusA [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|219622024|gb|ACL30180.1| transcription elongation factor NusA [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|311086115|gb|ADP66197.1| transcription elongation factor NusA [Buchnera aphidicola str. LL01
(Acyrthosiphon pisum)]
gi|311086688|gb|ADP66769.1| transcription elongation factor NusA [Buchnera aphidicola str.
TLW03 (Acyrthosiphon pisum)]
Length = 496
Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats.
Identities = 191/510 (37%), Positives = 306/510 (60%), Gaps = 20/510 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EKS+ R+ + + ++ A + + DIRV IN +TG + FR
Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALEMALATATKKKHEQEIDIRVSINRKTGGFTTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVE V T +I+L+ A + + + + + +DF R+ Q+AKQVI+QKVREA
Sbjct: 62 WMVVETVTQPTREITLEAACFDGEKVYLNDYIEEQIESVDFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F+ G+II+G VK++ N+++DLGN+ + +I R+ + REN RPGDR++
Sbjct: 122 ERAMLVEQFRKYTGQIITGIVKKINRDNIMLDLGNNAEALILREGMLPRENFRPGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y V E RG Q+ +SR+ + + +LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 ILYGVYPEARGAQLFISRSKTEMLTELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDI++W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELCGERIDIILWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V L+ AIGR GQNVRLASQ++GW ++++T E+ +++ + FF +
Sbjct: 302 CHTMDIAVDVNNLAQAIGRNGQNVRLASQISGWELNVMTTEDLHSKHKEEAHTAFNFFKK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+N++E I +LV EGF+ +EELA + +E+ ++ E+ A +++ A+ L ++
Sbjct: 362 NLNINENIIKILVKEGFSSLEELAYIPFNELLEVKNLTEDQAKKVREGAKSKLLLMESDK 421
Query: 425 QK-KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483
K I+E +EL I G+++ + + L E I T+E+LA +DDL
Sbjct: 422 NKMIIQERKTEKELLKINGMNAVLALQLAEKNIFTIEELADQGIDDLTDIK--------- 472
Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
+Q +I+ AR + W
Sbjct: 473 --------NLNSEQAGLLIMTAR-NICWFS 493
>gi|325981567|ref|YP_004293969.1| NusA antitermination factor [Nitrosomonas sp. AL212]
gi|325531086|gb|ADZ25807.1| NusA antitermination factor [Nitrosomonas sp. AL212]
Length = 490
Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats.
Identities = 213/508 (41%), Positives = 321/508 (63%), Gaps = 23/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EKS+++++V + + ++ A + + + R+ I+ ETGD FR
Sbjct: 4 EILLLVDALAREKSVEKEIVFTALELALSSATKKRFQEDIETRISIDRETGDHQSFRRWL 63
Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV + VE+ Q++L A D +I +G + PL P++FGR+ Q+AKQVI QK+REA
Sbjct: 64 VVNDDSVEDSARQVALSDAIKIDANIQVGDHLEKPLEPIEFGRIGAQAAKQVIFQKIREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER++ +F ++ +I+GT+KR+E GN I++ G + ++RD+ I +ENLR GDRV++Y
Sbjct: 124 EREQTLNDFLEREDYLINGTIKRMERGNAIIESGKIEAELQRDQMIPKENLRVGDRVRAY 183
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+Y V R RGPQ+ LSR P+F++KLF +EVPEI G++++KA +RDPGSRAK+AV S+D
Sbjct: 184 LYKVDRAARGPQLKLSRISPEFLMKLFELEVPEIEEGLLEIKAAARDPGSRAKIAVKSND 243
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
IDP+G CVGMRGSRVQAV++EL E++DIV+WS D ATF+INAL PA ++ +++DE+
Sbjct: 244 QRIDPIGTCVGMRGSRVQAVISELAGERVDIVLWSDDPATFIINALAPAEISSIMVDEEK 303
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
++++V + L+ AIGR GQNVRLAS+LTGW ++I+T EE +++ ++ Q FMQ
Sbjct: 304 HSMDIVVDDDNLAQAIGRGGQNVRLASELTGWELNIMTIEESKTKHEQETSQICQLFMQK 363
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425
++VDE IA +L+ EGF +EE+A + ++E+ IE DEET EI+ RAR L I +
Sbjct: 364 LDVDEEIAEILMQEGFVSLEEVAYIPLNEMLEIESLDEETVNEIRNRARNVLLTDAIANE 423
Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485
+K+ V+E+L SI G+D I L GI T D
Sbjct: 424 EKVE--HVAEDLLSIEGMDINIIRELAAKGIIT-----------------QSDLADLAAD 464
Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIE 513
+ G + +II AR W
Sbjct: 465 DLVEMTGIDIELANQLIIKARAP--WFT 490
>gi|170696460|ref|ZP_02887586.1| NusA antitermination factor [Burkholderia graminis C4D1M]
gi|170138613|gb|EDT06815.1| NusA antitermination factor [Burkholderia graminis C4D1M]
Length = 491
Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats.
Identities = 213/508 (41%), Positives = 335/508 (65%), Gaps = 24/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++D+DVV + + ++ A++ L+ +DIRV I+ E+G+ FR +
Sbjct: 4 EVLMLVDALAREKNVDKDVVFAALEAALASASKKLFEEDADIRVHIDRESGEHETFRRWK 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ +I L AR++ P I I + +P+P ++FGR+ Q+AKQVI+QKVR+
Sbjct: 64 VVPDEAGLQEPDQEILLFEAREQKPEIQIDDYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ +F ++ I++G+VKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++
Sbjct: 124 AEREQILNDFLERGEHIMTGSVKRLDKGNFIVETGRVEALLRRDQLIPKENLRVGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V +
Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVG+RGSRVQAV EL E +DIV+WS D A FVI AL PA V +V+DE+
Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENVDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ FM
Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNQERGVLRDLFMA 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L + I
Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTMAIAN 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ V+ +L S+ G+D+ + L E+ I+T ++LA +VD+L+ +
Sbjct: 424 EEKVE--NVALDLKSLDGMDADLLAKLAEHQIQTRDELAELAVDELVEMT---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512
G +D +++I+ AR W
Sbjct: 472 -------GMEEDAAKALIMKAREH--WF 490
>gi|209520195|ref|ZP_03268966.1| NusA antitermination factor [Burkholderia sp. H160]
gi|209499354|gb|EDZ99438.1| NusA antitermination factor [Burkholderia sp. H160]
Length = 491
Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats.
Identities = 212/508 (41%), Positives = 335/508 (65%), Gaps = 24/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++D+DVV + + ++ A++ L+ +DIRV I+ E+G+ FR +
Sbjct: 4 EVLMLVDALAREKNVDKDVVFAALEAALASASKKLFEEDADIRVHIDRESGEHETFRRWK 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ +I L AR++ P I + + +P+P ++FGR+ Q+AKQVI+QKVR+
Sbjct: 64 VVPDEAGLQEPDQEILLFEAREQQPDIQLDEYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ +F ++ I++G+VKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++
Sbjct: 124 AEREQILSDFLERGEHIMTGSVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V +
Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVG+RGSRVQAV EL E +DIV+WS D A FVI AL PA V +V+DE+
Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENVDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ FM
Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNQERGVLRDLFMA 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L + I
Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTLAIAN 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ V+ +L S+ G+D+ + L E+ I+T ++LA +VD+L+ +
Sbjct: 424 EEKVE--NVALDLKSLDGMDADLLAKLAEHQIQTRDELAELAVDELVEMT---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512
G +D +++I+ AR W
Sbjct: 472 -------GMGEDAAKALIMKAREH--WF 490
>gi|237746613|ref|ZP_04577093.1| transcription pausing [Oxalobacter formigenes HOxBLS]
gi|229377964|gb|EEO28055.1| transcription pausing [Oxalobacter formigenes HOxBLS]
Length = 518
Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats.
Identities = 205/494 (41%), Positives = 317/494 (64%), Gaps = 6/494 (1%)
Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66
LE+LQ+ DA+A EK++D+++VL + ++ A + Y DIRV I+ ++G++ FR
Sbjct: 3 LEILQLVDALAREKNVDKEIVLGALEHALALATKKRYPGDVDIRVAIDRQSGEVETFRRW 62
Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
VV + ++ ++ A+++ P I++G + D + +D GR Q KQ+++Q++R
Sbjct: 63 HVVPDEAGLQQPDQEMLFFEAKEQFPDIEVGDYIEDHVESVDLGRRFAQDTKQIVLQRIR 122
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183
+AER++ +F D+ +++GTVKR+E G+ IV+ G + + R++ I +ENLR GDRV+
Sbjct: 123 DAEREQILQDFLDRGDSLVTGTVKRMERGDAIVESGKVEARLPREQMIPKENLRIGDRVR 182
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+YI V R RGPQV+LSRT P+F+VKLF +EVPEI G++++K+ +RDPG RAK+AV++
Sbjct: 183 AYILRVERGARGPQVILSRTAPEFIVKLFELEVPEIEQGLLEIKSAARDPGVRAKIAVYT 242
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
+D IDP+G CVGMRGSRVQAV EL E++DIV+WS D A FVI AL PA V+ +V+DE
Sbjct: 243 ADKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIVVDE 302
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
D ++VIV +E L++AIGR GQNVRLA++LTGW I+I+T EE + + E + FM
Sbjct: 303 DKHAMDVIVDEENLAIAIGRSGQNVRLATELTGWKINIMTAEESADKTALEKAELQKLFM 362
Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423
+ ++VD +A +L+ EGF +EE+A V I+E+ IE FDEET EI+ RAR+ L I
Sbjct: 363 EKLDVDSEVADILIEEGFTSLEEIAYVPINEMLDIEAFDEETVNEIRQRARDALITEAIV 422
Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483
++ + G+ E L + G+ + LG G+KT+E AG + D+ G +
Sbjct: 423 SEEGM--AGMEEALSGLEGMSRSVAGKLGLAGVKTLERFAGLAYDEF-GAILALPVERAR 479
Query: 484 FDGFLSSLGTPKDQ 497
++
Sbjct: 480 QLLENEFADVTDEE 493
>gi|307730029|ref|YP_003907253.1| transcription termination factor NusA [Burkholderia sp. CCGE1003]
gi|307584564|gb|ADN57962.1| transcription termination factor NusA [Burkholderia sp. CCGE1003]
Length = 491
Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats.
Identities = 214/508 (42%), Positives = 335/508 (65%), Gaps = 24/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++D+DVV + + ++ A++ L+ +DIRV I+ E+G+ FR +
Sbjct: 4 EVLMLVDALAREKNVDKDVVFAALEAALASASKKLFEEDADIRVHIDRESGEHETFRRWK 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ +I L AR++ P I I + +P+P ++FGR+ Q+AKQVI+QKVR+
Sbjct: 64 VVPDEAGLQEPDQEILLFEAREQKPEIQIDEYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ +F ++ I++G+VKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++
Sbjct: 124 AEREQILNDFLERGEHIMTGSVKRLDKGNFIVETGRVEALLRRDQLIPKENLRVGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V +
Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVG+RGSRVQAV EL E +DIV+WS D A FVI AL PA V +V+DE+
Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENVDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ FM
Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNQERGVLRDLFMA 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I
Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ V+ +L S+ G+D+ + L E+ I+T ++LA +VD+L+ +
Sbjct: 424 EEKVE--NVALDLKSLDGMDADLLAKLAEHQIQTRDELAELAVDELVEMT---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512
G +D +++I+ AR W
Sbjct: 472 -------GMEEDAAKALIMKAREH--WF 490
>gi|295676260|ref|YP_003604784.1| transcription termination factor NusA [Burkholderia sp. CCGE1002]
gi|295436103|gb|ADG15273.1| transcription termination factor NusA [Burkholderia sp. CCGE1002]
Length = 491
Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats.
Identities = 212/508 (41%), Positives = 336/508 (66%), Gaps = 24/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++D+DVV + + ++ A++ L+ +DIRV I+ E+G+ FR +
Sbjct: 4 EVLMLVDALAREKNVDKDVVFAALEAALASASKKLFEEDADIRVHIDRESGEHETFRRWK 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ +I L AR++ P+I + + +P+P ++FGR+ Q+AKQVI+QKVR+
Sbjct: 64 VVPDEAGLQEPDQEILLFEAREQQPNIQLDEFIEEPVPSIEFGRIGAQAAKQVILQKVRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ +F ++ I++G+VKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++
Sbjct: 124 AEREQILNDFLERGEHIMTGSVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V +
Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVG+RGSRVQAV EL E +DIV+WS D A FVI AL PA V +V+DE+
Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENVDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ FM
Sbjct: 304 RHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNQERGVLRDLFMA 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L + I
Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTMAIAN 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ V+ +L S+ G+D+ + L E+ I+T ++LA +VD+L+ +
Sbjct: 424 EEKVE--NVALDLKSLDGMDADLLAKLAEHQIQTRDELAELAVDELVEMT---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512
G +D +++I+ AR W
Sbjct: 472 -------GMGEDAAKALIMKAREH--WF 490
>gi|15616983|ref|NP_240196.1| transcription elongation factor NusA [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219681736|ref|YP_002468122.1| transcription elongation factor NusA [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|257471436|ref|ZP_05635435.1| transcription elongation factor NusA [Buchnera aphidicola str. LSR1
(Acyrthosiphon pisum)]
gi|11386974|sp|P57459|NUSA_BUCAI RecName: Full=Transcription elongation protein nusA
gi|25299780|pir||B84974 N utilization substance protein A [imported] - Buchnera sp.
(strain APS)
gi|10039048|dbj|BAB13082.1| N utilization substance protein A [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219624579|gb|ACL30734.1| transcription elongation factor NusA [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|311087273|gb|ADP67353.1| transcription elongation factor NusA [Buchnera aphidicola str. JF99
(Acyrthosiphon pisum)]
Length = 496
Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats.
Identities = 191/510 (37%), Positives = 306/510 (60%), Gaps = 20/510 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EKS+ R+ + + ++ A + + DIRV IN +TG + FR
Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALEMALATATKKKHEQEIDIRVSINRKTGGFTTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVE V T +I+L+ A + + + + + +DF R+ Q+AKQVI+QKVREA
Sbjct: 62 WMVVETVTQPTREITLEAACFDGEKVYLNDYIEEQIESVDFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F+ G+II+G VK++ N+++DLGN+ + +I R+ + REN RPGDR++
Sbjct: 122 ERAMLVEQFRKYTGQIITGIVKKINRDNIMLDLGNNAEALILREGMLPRENFRPGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y V E RG Q+ +SR+ + + +LF +EVPEI ++++KA +RDPGSRAK+AV ++
Sbjct: 182 ILYGVYPEARGAQLFISRSKTEMLTELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV +EL E+IDI++W + A FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELCGERIDIILWDDNPAQFVINAMAPADVASIVVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V L+ AIGR GQNVRLASQ++GW ++++T E+ +++ + FF +
Sbjct: 302 CHTMDIAVDINNLAQAIGRNGQNVRLASQISGWELNVMTTEDLHSKHKEEAHTAFNFFKK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+N++E I +LV EGF+ +EELA + +E+ ++ E+ A +++ A+ L ++
Sbjct: 362 NLNINENIIKILVKEGFSSLEELAYIPFNELLEVKNLTEDQAKKVREGAKSKLLLMESDK 421
Query: 425 QK-KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483
K I+E +EL I G+++ + + L E I T+E+LA +DDL
Sbjct: 422 NKMIIQERKTEKELLKINGMNAVLALQLAEKNIFTIEELADQGIDDLTDIK--------- 472
Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
+Q +I+ AR + W
Sbjct: 473 --------NLNSEQAGLLIMTAR-NICWFS 493
>gi|330816693|ref|YP_004360398.1| NusA antitermination factor [Burkholderia gladioli BSR3]
gi|327369086|gb|AEA60442.1| NusA antitermination factor [Burkholderia gladioli BSR3]
Length = 491
Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats.
Identities = 210/508 (41%), Positives = 334/508 (65%), Gaps = 24/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++D+D+VL + ++ A++ L+ ++IRV I+ E+G+ +R
Sbjct: 4 EVLMLVDALAREKNVDKDIVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETYRRWL 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ +I L AR++ I++G + + +P ++FGR+ Q+AKQVI+QKVR+
Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKAEIEVGDYIEESVPSIEFGRIGAQAAKQVILQKVRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++
Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V +
Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+
Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSDDPAQFVIGALAPAAVQSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E ++ + ++ + FM
Sbjct: 304 KHSMDVVVDESELAVAIGRSGQNVRLASELTGWQINIMTPDESALKQGEERDRLRSLFMA 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +L+ EGF +EE+A V ++E+ IE FDEET E++ RAR+ L + I
Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEETVHELRNRARDALLTMAIAN 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ + +L S+ GI ++ L E+ + T +DLA +VD+L+ +
Sbjct: 424 EEKVENAAL--DLKSLDGITPELLAKLAEHSVATRDDLAELAVDELVEMT---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512
G ++ +++I+ AR W
Sbjct: 472 -------GVEEEAAKALIMKAREH--WF 490
>gi|161572974|ref|YP_208351.2| transcription elongation factor NusA [Neisseria gonorrhoeae FA
1090]
gi|240014533|ref|ZP_04721446.1| transcription elongation factor NusA [Neisseria gonorrhoeae DGI18]
gi|240121055|ref|ZP_04734017.1| transcription elongation factor NusA [Neisseria gonorrhoeae
PID24-1]
Length = 500
Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats.
Identities = 208/518 (40%), Positives = 325/518 (62%), Gaps = 30/518 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66
E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR
Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63
Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++
Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPDTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180
R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD
Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 183
Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
R+++ V Q++LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK
Sbjct: 184 RIRALFLRVEEIGNTGRKQIILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 243
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++
Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
+V+DED ++VIV +++L+LAIGR GQNVRLAS LTGW ++I+T E +
Sbjct: 304 IVIDEDKHAVDVIVAEDRLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
+ FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ +
Sbjct: 364 RRLFMNHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ I ++K+ E VS+++ ++ G+D+ + ++L E GI T +DLA +VD+L+ +
Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGVDADMLLSLAEAGITTRDDLAELAVDELIEIT---- 477
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
G ++ +++I+ AR W ++K
Sbjct: 478 -------------GVNEETAKAVILTAREH--WFTEDK 500
>gi|297180949|gb|ADI17152.1| transcription elongation factor [uncultured gamma proteobacterium
HF0070_08D07]
Length = 506
Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats.
Identities = 205/519 (39%), Positives = 309/519 (59%), Gaps = 30/519 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + D+V+ EK + ++ + + ++ A R YG D RV I+ G FR
Sbjct: 4 EILMVVDSVSNEKGVPKETLFEAVELALAVATRKRYGETFDFRVAIDRNDGSYETFRRWT 63
Query: 68 VVEEV-----------ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116
VV+E N ++L A+ +D G V + + + FGR+A Q+AKQ
Sbjct: 64 VVDEENMVDEEGEEKEFNPDAHLNLSQAQIKDSESSFGSVFEEQVESVGFGRIAAQTAKQ 123
Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISREN 175
VI+QKVREAERD+ + K+ I+SGTVK++ +VIVDLGN+ +G++ R+ I RE
Sbjct: 124 VIVQKVREAERDQIAAAYDGKINSIVSGTVKKLGRDSVIVDLGNNAEGILTREHLIPREI 183
Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235
R GDR+++ + +++ + RGPQ++LSRT Q +V+LF +EVPEI ++Q+ +RDPGS
Sbjct: 184 FRVGDRLRAMLVEIKSDNRGPQLMLSRTSRQMLVELFKIEVPEISEDVIQILGAARDPGS 243
Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295
RAK+AV ++D IDPVGACVGMRGSRVQAV EL E+IDIV+W + A INA+ PA
Sbjct: 244 RAKIAVKTNDGRIDPVGACVGMRGSRVQAVSGELAGERIDIVLWDDNPAQLTINAMAPAE 303
Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355
V +VLDE+ ++V V +E L+ AIGR GQNVRLAS L+GW+++I+TE+E + + +
Sbjct: 304 VASIVLDEESHSMDVAVTEENLAQAIGRGGQNVRLASDLSGWSLNIMTEQEAAQKQDDEA 363
Query: 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415
F++ ++VDE +A LV EGF +EE+A V I E++SIEGFDEE E++ RA++
Sbjct: 364 KSFIDDFIKYLSVDEDVAGALVEEGFTTLEEVAYVPIEELSSIEGFDEEIVSELRDRAKD 423
Query: 416 YLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSE 475
L I ++ G +E+L + G+ ++ L N + +MEDLA SV +L+
Sbjct: 424 SLLTKAIADEEANNLAGPNEDLLQMEGMTVELAKILSRNSVSSMEDLAELSVSELIEIEP 483
Query: 476 NKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
+ + +I+ AR W E+
Sbjct: 484 ----------------SIDESEGARLIMKAREP--WFEE 504
>gi|119504358|ref|ZP_01626438.1| transcription elongation factor NusA [marine gamma proteobacterium
HTCC2080]
gi|119459866|gb|EAW40961.1| transcription elongation factor NusA [marine gamma proteobacterium
HTCC2080]
Length = 490
Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats.
Identities = 201/509 (39%), Positives = 318/509 (62%), Gaps = 23/509 (4%)
Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70
+A+AV+ EK + D++ + ++ AA+ Y +DI V I+ +G+ R VV
Sbjct: 1 MVAEAVSAEKGVSEDIIFEAIELALATAAKKRYEEEADIEVVIDRVSGEYQTRRRWLVVP 60
Query: 71 EVEN--YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
+ E Q + + A + D ++ IG V + + DFGR+A Q+AKQVI+Q+VR+AER
Sbjct: 61 DTELALLGTQFTTEEAAEADANLQIGDVHEEIIENADFGRIAAQTAKQVIVQRVRDAERA 120
Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYIY 187
+ ++D++GE+++G VK+V NVIVDLGN+ +G++ R E + RE R DRV++ +
Sbjct: 121 QIVDLYRDRIGELLAGIVKKVTRDNVIVDLGNNAEGLLPRGELVGRETFRINDRVRAILS 180
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
++ E RGPQ+++SR + + +LF +EVPEI G++Q++A +RDPGSRAK+AV + D
Sbjct: 181 EINTESRGPQLVMSRACREMLTELFKIEVPEISEGVIQIRAAARDPGSRAKIAVKTGDQR 240
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
IDPVGACVGMRGSRVQAV EL +E++DI++W + A VINA+ PA V +V+DED
Sbjct: 241 IDPVGACVGMRGSRVQAVSNELDNERVDIILWDDNPAQLVINAMSPAEVESIVVDEDSNT 300
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
+EV V ++ L+ AIGR GQNVRLAS LTGWTI++++ +E ++ + E + FM A++
Sbjct: 301 MEVAVAEDNLAQAIGRGGQNVRLASDLTGWTINVMSTDEAVERQEAEAVEIIETFMNALD 360
Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427
VDE +A +LV EGF ++E+A V + E+ IEGFDE + E++ RA++ L + I ++K
Sbjct: 361 VDEDVAVVLVEEGFTTLDEVAYVPLEEMMGIEGFDEAISEELRARAKDALLTMAIATEEK 420
Query: 428 IRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGF 487
+ ++ +E+L ++ G++ + GI TMEDLA VDDL+
Sbjct: 421 L-DVEPAEDLLTMDGMERHLAFVFASRGIVTMEDLAEQGVDDLMDIE------------- 466
Query: 488 LSSLGTPKDQVESMIIHARYKMGWIEKEK 516
+++ +I+ AR W +E+
Sbjct: 467 ----DMTEERAGELIMTARAP--WFAEEE 489
>gi|152995057|ref|YP_001339892.1| NusA antitermination factor [Marinomonas sp. MWYL1]
gi|150835981|gb|ABR69957.1| NusA antitermination factor [Marinomonas sp. MWYL1]
Length = 496
Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats.
Identities = 183/512 (35%), Positives = 317/512 (61%), Gaps = 22/512 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + +AV+ EK + + V+ + ++ AA+ + + IRV I+ TGD +R
Sbjct: 4 EILLVVEAVSNEKDVPKQVIFEAVEIALASAAKRRFEEDALIRVSIDQRTGDYKTYRQWH 63
Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+V E+ ++++ + +++ + IG + + + FGR+A Q+AKQVI+QKVREA
Sbjct: 64 IVADEDYSAPAFELTIDDSEEQNLGVPIGEIYEEEVESEVFGRIAAQTAKQVIVQKVREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER + + +KVG+++ G VK+V ++I+DLG + + + +D+ I+RE+ R DR+++
Sbjct: 124 ERAKMVALYTEKVGKLVHGQVKKVTRDSLIIDLGENAEASLPKDQLIARESFRMNDRIRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ ++R + RG Q++LSR P FM++LF +EVPEI +++++ +RDPG RAK+AV ++
Sbjct: 184 LLLEIRDDSRGAQLILSRNAPAFMIELFRLEVPEISEEVIEIRGAARDPGLRAKIAVKTN 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+GACVGMRG+RVQAV E+ E++DIV+W + A VINA+ PA V +V+DED
Sbjct: 244 DRRIDPIGACVGMRGARVQAVSNEMNGERVDIVLWDDNPAQLVINAMAPAEVDSIVIDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V V + L+ AIGR GQNVRLAS LTGW+++++T E+ +Q++ + F+
Sbjct: 304 AHSMDVAVKSDNLAQAIGRNGQNVRLASTLTGWSLNVMTSEDAEAKQQEESQKLIDIFVN 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++D+ +A +V EGF +EE+A + + E+ I+GFDE+ E++ RA+E L +
Sbjct: 364 GLDIDDDLAIQMVDEGFTSLEEVAYIPMEEMLDIDGFDEDLVNELRSRAKEALLNQALQA 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++++ + + +L ++ G+D+ + + L G+ TMEDLA SVD+L
Sbjct: 424 EEQLDDAKPAADLLAMEGMDNHLALVLASMGVITMEDLAEQSVDEL-------------- 469
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
LS G +++ +I+ AR W + +
Sbjct: 470 ---LSVEGMTEERAGRLILTARAP--WFTESE 496
>gi|293398726|ref|ZP_06642902.1| N utilization substance protein A [Neisseria gonorrhoeae F62]
gi|59718534|gb|AAW89939.1| putative N utilisation substance protein A [Neisseria gonorrhoeae
FA 1090]
gi|291610866|gb|EFF39965.1| N utilization substance protein A [Neisseria gonorrhoeae F62]
Length = 505
Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats.
Identities = 208/518 (40%), Positives = 325/518 (62%), Gaps = 30/518 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66
E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR
Sbjct: 9 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 68
Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++
Sbjct: 69 LIVADEDYTYPDVEKTIEEIQEEIPDTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 128
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180
R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD
Sbjct: 129 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 188
Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
R+++ V Q++LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK
Sbjct: 189 RIRALFLRVEEIGNTGRKQIILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 248
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++
Sbjct: 249 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 308
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
+V+DED ++VIV +++L+LAIGR GQNVRLAS LTGW ++I+T E +
Sbjct: 309 IVIDEDKHAVDVIVAEDRLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 368
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
+ FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ +
Sbjct: 369 RRLFMNHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 428
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ I ++K+ E VS+++ ++ G+D+ + ++L E GI T +DLA +VD+L+ +
Sbjct: 429 TMAIAAEEKLGE--VSDDMRNLEGVDADMLLSLAEAGITTRDDLAELAVDELIEIT---- 482
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
G ++ +++I+ AR W ++K
Sbjct: 483 -------------GVNEETAKAVILTAREH--WFTEDK 505
>gi|268597521|ref|ZP_06131688.1| transcription elongation factor NusA [Neisseria gonorrhoeae FA19]
gi|268601718|ref|ZP_06135885.1| transcription elongation factor NusA [Neisseria gonorrhoeae PID18]
gi|268604051|ref|ZP_06138218.1| transcription elongation factor NusA [Neisseria gonorrhoeae PID1]
gi|268682510|ref|ZP_06149372.1| transcription elongation factor NusA [Neisseria gonorrhoeae PID332]
gi|268686952|ref|ZP_06153814.1| transcription elongation factor NusA [Neisseria gonorrhoeae
SK-93-1035]
gi|268551309|gb|EEZ46328.1| transcription elongation factor NusA [Neisseria gonorrhoeae FA19]
gi|268585849|gb|EEZ50525.1| transcription elongation factor NusA [Neisseria gonorrhoeae PID18]
gi|268588182|gb|EEZ52858.1| transcription elongation factor NusA [Neisseria gonorrhoeae PID1]
gi|268622794|gb|EEZ55194.1| transcription elongation factor NusA [Neisseria gonorrhoeae PID332]
gi|268627236|gb|EEZ59636.1| transcription elongation factor NusA [Neisseria gonorrhoeae
SK-93-1035]
Length = 503
Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats.
Identities = 208/518 (40%), Positives = 324/518 (62%), Gaps = 30/518 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66
E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR
Sbjct: 7 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 66
Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++
Sbjct: 67 LIVADEDYTYPDVEKTIEEIQEEIPDTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 126
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180
R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD
Sbjct: 127 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 186
Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
R+++ V Q++LSRT F+VKL+ EVPEI G+++++AV+RDPG RAK
Sbjct: 187 RIRALFLRVEEIGNTGRKQIILSRTSGDFLVKLYANEVPEIAGGMLEIRAVARDPGQRAK 246
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++
Sbjct: 247 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 306
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
+V+DED ++VIV +++L+LAIGR GQNVRLAS LTGW ++I+T E +
Sbjct: 307 IVIDEDKHAVDVIVAEDRLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 366
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
+ FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ +
Sbjct: 367 RRLFMNHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 426
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ I ++K+ E VS+++ ++ G+D+ + ++L E GI T +DLA +VD+L+ +
Sbjct: 427 TMAIAAEEKLGE--VSDDMRNLEGVDADMLLSLAEAGITTRDDLAELAVDELIEIT---- 480
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
G ++ +++I+ AR W ++K
Sbjct: 481 -------------GVNEETAKAVILTAREH--WFTEDK 503
>gi|91782988|ref|YP_558194.1| transcription elongation factor NusA [Burkholderia xenovorans
LB400]
gi|296158771|ref|ZP_06841600.1| NusA antitermination factor [Burkholderia sp. Ch1-1]
gi|91686942|gb|ABE30142.1| NusA antitermination factor [Burkholderia xenovorans LB400]
gi|295890976|gb|EFG70765.1| NusA antitermination factor [Burkholderia sp. Ch1-1]
Length = 491
Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats.
Identities = 212/508 (41%), Positives = 335/508 (65%), Gaps = 24/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++D+DVV + + ++ A++ L+ +DIRV I+ E+G+ FR +
Sbjct: 4 EVLMLVDALAREKNVDKDVVFAALEAALASASKKLFEEDADIRVHIDRESGEHETFRRWK 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ +I L AR++ P I + + +P+P ++FGR+ Q+AKQVI+QKVR+
Sbjct: 64 VVPDEAGLQEPDQEILLFEAREQKPEIQLDEYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ +F ++ I++G+VKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++
Sbjct: 124 AEREQILNDFLERGEHIMTGSVKRLDKGNFIVETGRVEALLRRDQLIPKENLRVGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V +
Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVG+RGSRVQAV EL E +DIV+WS D A FVI AL PA V +V+DE+
Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENVDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ FM
Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNQERGVLRDLFMA 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L + I
Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTLAIAN 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ V+ +L S+ G+D+ + L E+ I+T ++LA +VD+L+ +
Sbjct: 424 EEKVE--NVALDLKSLDGMDADLLAKLAEHQIQTRDELAELAVDELVEMT---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512
G +D +++I+ AR W
Sbjct: 472 -------GMEEDAAKALIMKAREH--WF 490
>gi|34496916|ref|NP_901131.1| transcription elongation factor NusA [Chromobacterium violaceum
ATCC 12472]
gi|34102772|gb|AAQ59136.1| N utilization substance transcription regulator protein
[Chromobacterium violaceum ATCC 12472]
Length = 492
Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats.
Identities = 212/510 (41%), Positives = 325/510 (63%), Gaps = 24/510 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66
E+L + DA+A EK++ +DVV S + ++ A + + D+RVEI+ TG FR
Sbjct: 4 EILLLVDALASEKNVSKDVVFSALEMALASATKKKFTDDEMDVRVEIDRHTGQYQTFRRW 63
Query: 67 EVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VVE+ +E+ + +I L ARDRDP I++G + +P+ ++FGR+ Q+AKQVI+Q++R+
Sbjct: 64 LVVEDELLESESKEIGLIDARDRDPRIELGAFIEEPMEAVEFGRIGAQTAKQVILQRIRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ EF + ++ GT+KR+E GN IV+ G + V+ RD+ I +ENLR GDRVK+
Sbjct: 124 AEREQLLNEFLQRREHLVIGTIKRIERGNAIVECGKLEAVLPRDQMIPKENLRVGDRVKA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
Y+ + R+ RGPQ++LSRT P+F+VKLF +EVPEI G+++++A RDPG RAK+AV ++
Sbjct: 184 YLLRIDRQGRGPQLILSRTAPEFLVKLFELEVPEIEEGMLEIRAAVRDPGMRAKIAVKAN 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D+ IDP G C+GMRGSRVQAV EL E++DIV+W+P+ A FVINAL PA V+++++DED
Sbjct: 244 DARIDPQGTCIGMRGSRVQAVTQELAGERVDIVLWAPEPAQFVINALSPAEVSRIMVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++VIV +EQL+LAIGR GQNV+LA++LTGW ++I+T E Q + Q F+
Sbjct: 304 NHSMDVIVEEEQLALAIGRSGQNVKLAAELTGWYLNIMTVAEAEEKHQAEDAALRQLFVS 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
A++VDE A LV EGFA +EE+A V + E+ IEGF+EE E++ RAR+ L I
Sbjct: 364 ALSVDEDTAAKLVEEGFAALEEVAYVPLEEMLEIEGFNEELVGELRSRARDALLTQAIAS 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++++ V+++L + G+D+++ L G+ T
Sbjct: 424 EEQVE--NVADDLKDVEGLDAELVRKLAAGGVTTR-----------------DDLADLAV 464
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
D + G + ++I+ AR W +
Sbjct: 465 DDLVDMTGMEAEAARAIIMKAREH--WFNQ 492
>gi|194099046|ref|YP_002002127.1| transcription elongation factor NusA [Neisseria gonorrhoeae
NCCP11945]
gi|254494079|ref|ZP_05107250.1| transcription elongation factor NusA [Neisseria gonorrhoeae 1291]
gi|268595172|ref|ZP_06129339.1| transcription elongation factor NusA [Neisseria gonorrhoeae 35/02]
gi|268599676|ref|ZP_06133843.1| transcription elongation factor NusA [Neisseria gonorrhoeae MS11]
gi|268684674|ref|ZP_06151536.1| transcription elongation factor NusA [Neisseria gonorrhoeae
SK-92-679]
gi|193934336|gb|ACF30160.1| transcription elongation factor NusA [Neisseria gonorrhoeae
NCCP11945]
gi|226513119|gb|EEH62464.1| transcription elongation factor NusA [Neisseria gonorrhoeae 1291]
gi|268548561|gb|EEZ43979.1| transcription elongation factor NusA [Neisseria gonorrhoeae 35/02]
gi|268583807|gb|EEZ48483.1| transcription elongation factor NusA [Neisseria gonorrhoeae MS11]
gi|268624958|gb|EEZ57358.1| transcription elongation factor NusA [Neisseria gonorrhoeae
SK-92-679]
gi|317164606|gb|ADV08147.1| transcription elongation factor NusA [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 503
Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats.
Identities = 209/518 (40%), Positives = 324/518 (62%), Gaps = 30/518 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66
E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR
Sbjct: 7 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 66
Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++
Sbjct: 67 LIVADEDYTYPDVEKTIEEIQEEIPDTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 126
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180
R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD
Sbjct: 127 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 186
Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
R+++ V QV+LSRT F+VKL+ EVPEI G+++++AV+RDPG RAK
Sbjct: 187 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIAGGMLEIRAVARDPGQRAK 246
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++
Sbjct: 247 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 306
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
+V+DED ++VIV +++L+LAIGR GQNVRLAS LTGW ++I+T E +
Sbjct: 307 IVIDEDKHAVDVIVAEDRLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 366
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
+ FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ +
Sbjct: 367 RRLFMNHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 426
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ I ++K+ E VS+++ ++ G+D+ + ++L E GI T +DLA +VD+L+ +
Sbjct: 427 TMAIAAEEKLGE--VSDDMRNLEGVDADMLLSLAEAGITTRDDLAELAVDELIEIT---- 480
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
G ++ +++I+ AR W ++K
Sbjct: 481 -------------GVNEETAKAVILTAREH--WFTEDK 503
>gi|304386889|ref|ZP_07369151.1| transcription termination/antitermination protein NusA [Neisseria
meningitidis ATCC 13091]
gi|304339048|gb|EFM05140.1| transcription termination/antitermination protein NusA [Neisseria
meningitidis ATCC 13091]
Length = 503
Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats.
Identities = 212/518 (40%), Positives = 324/518 (62%), Gaps = 30/518 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66
E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR
Sbjct: 7 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 66
Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++
Sbjct: 67 LIVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 126
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180
R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD
Sbjct: 127 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 186
Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK
Sbjct: 187 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 246
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++
Sbjct: 247 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 306
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
+V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E +
Sbjct: 307 IVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 366
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
+ FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ +
Sbjct: 367 RRLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 426
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA SVD+L+ +
Sbjct: 427 TMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELSVDELIEIT---- 480
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
G ++ +++I+ AR W ++K
Sbjct: 481 -------------GVNEETAKAVILTAREH--WFTEDK 503
>gi|153207276|ref|ZP_01946040.1| transcription termination factor NusA [Coxiella burnetii 'MSU Goat
Q177']
gi|154706434|ref|YP_001423972.1| transcription elongation factor NusA [Coxiella burnetii Dugway
5J108-111]
gi|165918786|ref|ZP_02218872.1| transcription termination factor NusA [Coxiella burnetii RSA 334]
gi|212212197|ref|YP_002303133.1| transcription elongation factor NusA [Coxiella burnetii CbuG_Q212]
gi|212218228|ref|YP_002305015.1| transcription elongation factor NusA [Coxiella burnetii CbuK_Q154]
gi|120576764|gb|EAX33388.1| transcription termination factor NusA [Coxiella burnetii 'MSU Goat
Q177']
gi|154355720|gb|ABS77182.1| N utilization substance protein A [Coxiella burnetii Dugway
5J108-111]
gi|165917510|gb|EDR36114.1| transcription termination factor NusA [Coxiella burnetii RSA 334]
gi|212010607|gb|ACJ17988.1| N utilization substance protein A [Coxiella burnetii CbuG_Q212]
gi|212012490|gb|ACJ19870.1| N utilization substance protein A [Coxiella burnetii CbuK_Q154]
Length = 503
Score = 438 bits (1127), Expect = e-120, Method: Composition-based stats.
Identities = 207/520 (39%), Positives = 327/520 (62%), Gaps = 27/520 (5%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS-DIRVEINPETGDISLFR 64
++L I D+++ E+ + ++V+ + ++ Y IRV I+ +TGD FR
Sbjct: 2 NKDILLIVDSMSNERGVSKEVIFEAIEAALAAVTAKRYEEDDVKIRVAIDQKTGDYESFR 61
Query: 65 LLEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
VVE+ +E +++LK AR+ D +++G V+ +P+ + FGR+A Q AKQVI+Q
Sbjct: 62 CWTVVEDTNESLEFPNQEMTLKQAREIDSDLEVGDVIEEPVESVKFGRIAAQQAKQVIVQ 121
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPG 179
KVREAER + +++ +VGE++ G VKRV ++I+D+G + + ++ R+E I RE R
Sbjct: 122 KVREAERAKIIRQYEKRVGELVIGVVKRVTRESIILDMGENAEALLLREEMIPREAFRIN 181
Query: 180 DRVKSYIYD-VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
DR+++Y+Y + ++RGPQ+L+SRT P+F+V+LF +EVPEI ++++K +RDPGSRAK
Sbjct: 182 DRLRAYLYSVCQDKKRGPQLLVSRTRPEFLVELFKIEVPEIGEEVIEIKGAARDPGSRAK 241
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++D IDP+GACVGMRGSRVQAV EL E+IDIV+W + A VINA+ PA V
Sbjct: 242 IAVKTNDGRIDPIGACVGMRGSRVQAVSNELGGERIDIVLWDDNPAQLVINAMAPAEVAS 301
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
+V+DED +++ V K+QLS AIGR GQNVRLAS+LTGWT+++++E E + +K+ +
Sbjct: 302 IVVDEDSHTMDIAVNKDQLSQAIGRSGQNVRLASELTGWTLNVMSEAEMAQKHEKEAGKI 361
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
FM+ ++VDE +A LV GF ++EE+A V E+ +EGFDE+ + E+Q RA + L
Sbjct: 362 KTAFMEKLDVDEEVADALVQAGFMNLEEVAYVPKEELQGVEGFDEDISAELQRRAGDVLL 421
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+I Q+ + E +E+L ++PG+ +++ L EN + T +DLA SV DL E
Sbjct: 422 TQEIAKQE-LDEKKPAEDLLTLPGMTTELARQLVENEVLTRDDLAEKSVLDLKEIIE--- 477
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518
+ ++I+ AR W +E+
Sbjct: 478 --------------IDDEAAANLIMAARAH--WFAEEESE 501
>gi|134095611|ref|YP_001100686.1| transcription pausing; L factor [Herminiimonas arsenicoxydans]
gi|133739514|emb|CAL62565.1| Transcription elongation protein nusA (N utilization substance
protein A) (L factor) [Herminiimonas arsenicoxydans]
Length = 519
Score = 438 bits (1127), Expect = e-120, Method: Composition-based stats.
Identities = 203/493 (41%), Positives = 317/493 (64%), Gaps = 6/493 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+LQ+ DA+A EK++D D+V + ++ +A + Y DIRV I+ +TG+ FR
Sbjct: 4 EILQLVDALAREKNVDPDIVFGALEHALAQATKKRYEGDVDIRVSIDRDTGEFESFRRWH 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ +I A+++ I++ + +P+ ++FGR Q KQV++Q++R+
Sbjct: 64 VVPDDAGLQLPDQEILHFEAKEQIGDIEVDDHIEEPIESVEFGRRFAQDTKQVVLQRIRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ +F ++ +++GT+KR+E G+ IV+ G + + RD+TI +ENLR GDRV++
Sbjct: 124 AEREQILADFLERGDSLVTGTIKRMERGDAIVESGRIEARLPRDQTIPKENLRIGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI + R RGPQV+LSRT P+F++KLF +EVPEI G++++K+ +RD G RAK+AVF+S
Sbjct: 184 YILRIDRNARGPQVILSRTAPEFIMKLFELEVPEIEQGLLEIKSAARDAGVRAKIAVFTS 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVGMRGSRVQAV EL E++DIV+WS D A FVI AL PA V+ +V+DE+
Sbjct: 244 DKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T EE + Q + FM+
Sbjct: 304 KHAMDVVVDEENLAIAIGRGGQNVRLASELTGWQINIMTAEESADKSQLETAATRILFME 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VD+ +A +LV EGFA +EE+A V I E+ IE FDE+T E++ RAR+ L I
Sbjct: 364 KLDVDQEVADILVDEGFASLEEIAYVPIGEMLDIESFDEDTVNELRNRARDALVTEAIAS 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + G+ E L ++ G+D + LG G+KT++ AG + D+ G + +
Sbjct: 424 EEGME--GMDEALANLEGMDRIVAGKLGLAGVKTLDAFAGLAYDEF-GAILALPTDRARH 480
Query: 485 DGFLSSLGTPKDQ 497
++
Sbjct: 481 LIENEFKDVTDEE 493
>gi|240016979|ref|ZP_04723519.1| transcription elongation factor NusA [Neisseria gonorrhoeae FA6140]
gi|240081421|ref|ZP_04725964.1| transcription elongation factor NusA [Neisseria gonorrhoeae FA19]
gi|240116051|ref|ZP_04730113.1| transcription elongation factor NusA [Neisseria gonorrhoeae PID18]
gi|240118338|ref|ZP_04732400.1| transcription elongation factor NusA [Neisseria gonorrhoeae PID1]
gi|240123886|ref|ZP_04736842.1| transcription elongation factor NusA [Neisseria gonorrhoeae PID332]
gi|240128559|ref|ZP_04741220.1| transcription elongation factor NusA [Neisseria gonorrhoeae
SK-93-1035]
gi|260440135|ref|ZP_05793951.1| transcription elongation factor NusA [Neisseria gonorrhoeae DGI2]
Length = 500
Score = 438 bits (1127), Expect = e-120, Method: Composition-based stats.
Identities = 208/518 (40%), Positives = 324/518 (62%), Gaps = 30/518 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66
E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR
Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63
Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++
Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPDTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180
R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD
Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 183
Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
R+++ V Q++LSRT F+VKL+ EVPEI G+++++AV+RDPG RAK
Sbjct: 184 RIRALFLRVEEIGNTGRKQIILSRTSGDFLVKLYANEVPEIAGGMLEIRAVARDPGQRAK 243
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++
Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
+V+DED ++VIV +++L+LAIGR GQNVRLAS LTGW ++I+T E +
Sbjct: 304 IVIDEDKHAVDVIVAEDRLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
+ FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ +
Sbjct: 364 RRLFMNHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ I ++K+ E VS+++ ++ G+D+ + ++L E GI T +DLA +VD+L+ +
Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGVDADMLLSLAEAGITTRDDLAELAVDELIEIT---- 477
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
G ++ +++I+ AR W ++K
Sbjct: 478 -------------GVNEETAKAVILTAREH--WFTEDK 500
>gi|239999349|ref|ZP_04719273.1| transcription elongation factor NusA [Neisseria gonorrhoeae 35/02]
gi|240113616|ref|ZP_04728106.1| transcription elongation factor NusA [Neisseria gonorrhoeae MS11]
gi|240126085|ref|ZP_04738971.1| transcription elongation factor NusA [Neisseria gonorrhoeae
SK-92-679]
Length = 500
Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats.
Identities = 209/518 (40%), Positives = 324/518 (62%), Gaps = 30/518 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66
E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR
Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63
Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++
Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPDTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180
R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD
Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 183
Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
R+++ V QV+LSRT F+VKL+ EVPEI G+++++AV+RDPG RAK
Sbjct: 184 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIAGGMLEIRAVARDPGQRAK 243
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++
Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
+V+DED ++VIV +++L+LAIGR GQNVRLAS LTGW ++I+T E +
Sbjct: 304 IVIDEDKHAVDVIVAEDRLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
+ FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ +
Sbjct: 364 RRLFMNHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ I ++K+ E VS+++ ++ G+D+ + ++L E GI T +DLA +VD+L+ +
Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGVDADMLLSLAEAGITTRDDLAELAVDELIEIT---- 477
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
G ++ +++I+ AR W ++K
Sbjct: 478 -------------GVNEETAKAVILTAREH--WFTEDK 500
>gi|325204603|gb|ADZ00057.1| transcription termination/antitermination protein nusA [Neisseria
meningitidis M01-240355]
Length = 500
Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats.
Identities = 212/518 (40%), Positives = 324/518 (62%), Gaps = 30/518 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66
E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR
Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63
Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++
Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180
R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD
Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 183
Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK
Sbjct: 184 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 243
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++
Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
+V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E +
Sbjct: 304 IVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
+ FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ +
Sbjct: 364 RRLFMDYLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA SVD+L+ +
Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELSVDELIEIT---- 477
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
G ++ +++I+ AR W ++K
Sbjct: 478 -------------GVNEETAKAVILTAREH--WFTEDK 500
>gi|187923623|ref|YP_001895265.1| transcription elongation factor NusA [Burkholderia phytofirmans
PsJN]
gi|187714817|gb|ACD16041.1| NusA antitermination factor [Burkholderia phytofirmans PsJN]
Length = 491
Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats.
Identities = 212/508 (41%), Positives = 335/508 (65%), Gaps = 24/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++D+DVV + + ++ A++ L+ +DIRV+I+ E+G+ FR +
Sbjct: 4 EVLMLVDALAREKNVDKDVVFAALEAALASASKKLFEEDADIRVQIDRESGEHETFRRWK 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ +I L AR++ P I + + +P+P ++FGR+ Q+AKQVI+QKVR+
Sbjct: 64 VVPDEAGLQEPDQEILLFEAREQKPEIQLDEFIEEPVPSIEFGRIGAQAAKQVILQKVRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ +F ++ I++G+VKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++
Sbjct: 124 AEREQILNDFLERGEHIMTGSVKRLDKGNFIVETGRVEALLRRDQLIPKENLRVGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V +
Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVG+RGSRVQAV EL E +DIV+WS D A FVI AL PA V +V+DE+
Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENVDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ FM
Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNQERGVLRDLFMA 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L I
Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTQAIAN 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K+ V+ +L S+ G+D+ + L E+ I+T ++LA +VD+L+ +
Sbjct: 424 EEKVE--NVALDLKSLDGMDADLLAKLAEHQIQTRDELAELAVDELVEMT---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512
G +D +++I+ AR W
Sbjct: 472 -------GMEEDAAKALIMKAREH--WF 490
>gi|325205639|gb|ADZ01092.1| transcription termination/antitermination protein nusA [Neisseria
meningitidis M04-240196]
Length = 500
Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats.
Identities = 210/518 (40%), Positives = 325/518 (62%), Gaps = 30/518 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66
E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR
Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63
Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++
Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180
R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD
Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 183
Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK
Sbjct: 184 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 243
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++
Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
+V+DED ++VIV ++QL+LAIGR GQNVRLAS+LTGW ++I+T E +
Sbjct: 304 IVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASELTGWQLNIMTSAEADERNAAEDAAI 363
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
+ FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ +
Sbjct: 364 RRLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ I ++K+ E VS+++ ++ G+D+ + +L E GI T +DLA +VD+L+ +
Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGVDADMLRSLAEAGITTRDDLAELAVDELIEIT---- 477
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
G ++ +++I+ AR W ++K
Sbjct: 478 -------------GVNEETAKAVILTAREH--WFTEDK 500
>gi|325136708|gb|EGC59308.1| transcription termination/antitermination protein nusA [Neisseria
meningitidis M0579]
Length = 500
Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats.
Identities = 212/518 (40%), Positives = 324/518 (62%), Gaps = 30/518 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66
E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR
Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63
Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++
Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTAIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180
R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD
Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 183
Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK
Sbjct: 184 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 243
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++
Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
+V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E +
Sbjct: 304 IVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
+ FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ +
Sbjct: 364 RRLFMDYLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA SVD+L+ +
Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELSVDELIEIT---- 477
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
G ++ +++I+ AR W ++K
Sbjct: 478 -------------GVNEETAKAVILTAREH--WFTEDK 500
>gi|15677491|ref|NP_274647.1| transcription elongation factor NusA [Neisseria meningitidis MC58]
gi|7226892|gb|AAF41991.1| N utilization substance protein A [Neisseria meningitidis MC58]
gi|319410895|emb|CBY91289.1| transcription elongation protein nusA (N utilization substance
protein A; L factor) [Neisseria meningitidis WUE 2594]
gi|325140713|gb|EGC63227.1| transcription termination/antitermination protein nusA [Neisseria
meningitidis CU385]
gi|325144892|gb|EGC67179.1| transcription termination/antitermination protein nusA [Neisseria
meningitidis M01-240013]
gi|325199764|gb|ADY95219.1| transcription termination/antitermination protein nusA [Neisseria
meningitidis H44/76]
Length = 500
Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats.
Identities = 211/518 (40%), Positives = 324/518 (62%), Gaps = 30/518 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66
E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR
Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63
Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++
Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180
R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD
Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 183
Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK
Sbjct: 184 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 243
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++
Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
+V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E +
Sbjct: 304 IVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
+ FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ +
Sbjct: 364 RRLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ +
Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELIEIT---- 477
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
G ++ +++I+ AR W ++K
Sbjct: 478 -------------GVNEETAKAVILTAREH--WFTEDK 500
>gi|160898430|ref|YP_001564012.1| NusA antitermination factor [Delftia acidovorans SPH-1]
gi|160364014|gb|ABX35627.1| NusA antitermination factor [Delftia acidovorans SPH-1]
Length = 495
Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats.
Identities = 201/512 (39%), Positives = 320/512 (62%), Gaps = 24/512 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
ELL + +A++ EK+++RD+V + ++ +A + LY DIRV I+ ++G+ FR
Sbjct: 2 NRELLMLVEAISREKNVERDLVFGAVESALAQATKKLYQGEVDIRVAIDRDSGNYDTFRR 61
Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
VV + ++N + L A+DR P I G + + + + GR+ +AKQVI+QK+
Sbjct: 62 WLVVPDDAGLQNPDAEEMLMDAQDRVPGISEGEYIEEEIESVPIGRIGAMAAKQVILQKI 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182
R+AER+ EF + I +GTVKR++ G++IV+ G +G +RR+E I +ENLR GDRV
Sbjct: 122 RDAEREMLLNEFLSRGDRIFTGTVKRMDKGDIIVEAGRVEGRLRRNEMIPKENLRNGDRV 181
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
++ I +V RG ++LSR+ P+FMV+LF EVPEI G++++K+ +RD GSRAK+AV
Sbjct: 182 RAMIMEVDATLRGAPIILSRSAPEFMVELFRNEVPEIEQGLLEIKSCARDSGSRAKIAVL 241
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA V+ +V+D
Sbjct: 242 SHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVVD 301
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
E+ ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+ E + + + Q F
Sbjct: 302 EEKHAMDVVVDEENLAIAIGRGGQNVRLASELTGWKINIMDAAESAQKQADESAVARQLF 361
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
M+ ++VDE IA++L+ EGF +EE+A V + E+ IE FDEET E++ RA++ L +I
Sbjct: 362 MEKLDVDEEIANILIEEGFETLEEVAYVPLQEMLEIEAFDEETVNELRTRAKDALLTQEI 421
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482
++ + VS++L ++ G+ +I L E + T +DLA ++D+L +
Sbjct: 422 AHEENVG--KVSQDLLTLEGMTPEIVDKLAEADVHTRDDLADLAIDELTELTGQ------ 473
Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
+++ +++I+ AR W +
Sbjct: 474 -----------TEEEAKALIMKAREH--WFTE 492
>gi|291043424|ref|ZP_06569145.1| transcription elongation factor NusA [Neisseria gonorrhoeae DGI2]
gi|291012660|gb|EFE04645.1| transcription elongation factor NusA [Neisseria gonorrhoeae DGI2]
Length = 505
Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats.
Identities = 208/518 (40%), Positives = 324/518 (62%), Gaps = 30/518 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66
E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR
Sbjct: 9 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 68
Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++
Sbjct: 69 LIVADEDYTYPDVEKTIEEIQEEIPDTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 128
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180
R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD
Sbjct: 129 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 188
Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
R+++ V Q++LSRT F+VKL+ EVPEI G+++++AV+RDPG RAK
Sbjct: 189 RIRALFLRVEEIGNTGRKQIILSRTSGDFLVKLYANEVPEIAGGMLEIRAVARDPGQRAK 248
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++
Sbjct: 249 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 308
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
+V+DED ++VIV +++L+LAIGR GQNVRLAS LTGW ++I+T E +
Sbjct: 309 IVIDEDKHAVDVIVAEDRLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 368
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
+ FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ +
Sbjct: 369 RRLFMNHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 428
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ I ++K+ E VS+++ ++ G+D+ + ++L E GI T +DLA +VD+L+ +
Sbjct: 429 TMAIAAEEKLGE--VSDDMRNLEGVDADMLLSLAEAGITTRDDLAELAVDELIEIT---- 482
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
G ++ +++I+ AR W ++K
Sbjct: 483 -------------GVNEETAKAVILTAREH--WFTEDK 505
>gi|29654724|ref|NP_820416.1| transcription elongation factor NusA [Coxiella burnetii RSA 493]
gi|81628742|sp|Q83BS0|NUSA_COXBU RecName: Full=Transcription elongation protein nusA
gi|29541992|gb|AAO90930.1| N utilization substance protein A [Coxiella burnetii RSA 493]
Length = 503
Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats.
Identities = 208/520 (40%), Positives = 328/520 (63%), Gaps = 27/520 (5%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS-DIRVEINPETGDISLFR 64
++L I D+++ E+ + ++V+ + ++ Y IRV I+ +TGD FR
Sbjct: 2 NKDILLIVDSMSNERGVSKEVIFEAIEAALAAVTAKRYEEDDVKIRVAIDQKTGDYESFR 61
Query: 65 LLEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
VVE+ +E +++LK AR+ D +++G V+ +P+ + FGR+AVQ AKQVI+Q
Sbjct: 62 CWTVVEDTNESLEFPNQEMTLKQAREIDSDLEVGDVIEEPVESVKFGRIAVQQAKQVIVQ 121
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPG 179
KVREAER + +++ +VGE++ G VKRV ++I+D+G + + ++ R+E I RE R
Sbjct: 122 KVREAERAKIIRQYEKRVGELVIGVVKRVTRESIILDMGENAEALLLREEMIPREAFRIN 181
Query: 180 DRVKSYIYD-VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
DR+++Y+Y + ++RGPQ+L+SRT P+F+V+LF +EVPEI ++++K +RDPGSRAK
Sbjct: 182 DRLRAYLYSVCQDKKRGPQLLVSRTRPEFLVELFKIEVPEIGEEVIEIKGAARDPGSRAK 241
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++D IDP+GACVGMRGSRVQAV EL E+IDIV+W + A VINA+ PA V
Sbjct: 242 IAVKTNDGRIDPIGACVGMRGSRVQAVSNELGGERIDIVLWDDNPAQLVINAMAPAEVAS 301
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
+V+DED +++ V K+QLS AIGR GQNVRLAS+LTGWT+++++E E + +K+ +
Sbjct: 302 IVVDEDSHTMDIAVNKDQLSQAIGRSGQNVRLASELTGWTLNVMSEAEMAQKHEKEAGKI 361
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
FM+ ++VDE +A LV GF ++EE+A V E+ +EGFDE+ + E+Q RA + L
Sbjct: 362 KTAFMEKLDVDEEVADALVQAGFMNLEEVAYVPKEELQGVEGFDEDISAELQRRAGDVLL 421
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+I Q+ + E +E+L ++PG+ +++ L EN + T +DLA SV DL E
Sbjct: 422 TQEIAKQE-LDEKKPAEDLLTLPGMTTELARQLVENEVLTRDDLAEKSVLDLKEIIE--- 477
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518
+ ++I+ AR W +E+
Sbjct: 478 --------------IDDEAAANLIMAARAH--WFAEEESE 501
>gi|261400895|ref|ZP_05987020.1| transcription termination/antitermination protein NusA [Neisseria
lactamica ATCC 23970]
gi|269209254|gb|EEZ75709.1| transcription termination/antitermination protein NusA [Neisseria
lactamica ATCC 23970]
Length = 500
Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats.
Identities = 208/518 (40%), Positives = 324/518 (62%), Gaps = 30/518 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66
E+LQ+A+A+A EK++D +VV + ++ AA+ G D+RV+I+ +TG+ FR
Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKAGREHMDVRVQIDRDTGEYQTFRRW 63
Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++
Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTAIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180
R+AER++ EF +I++GTVKRVE +IV++ G D +I RD++I REN R GD
Sbjct: 124 RDAEREQNLNEFLATREDIVAGTVKRVERHGIIVEVVAGKLDALIPRDQSIPRENFRSGD 183
Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
R+++ V QV+LSRT F+ KL+ EVPEI +G++++++V+RDPG RAK
Sbjct: 184 RIRALFQRVEEIGNTGRKQVILSRTSADFLAKLYANEVPEISDGLLEIRSVARDPGQRAK 243
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++
Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
+V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E +
Sbjct: 304 IVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
+ FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ +
Sbjct: 364 RRLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ I ++K+ E VS+++ ++ G+D+ + L E GI T +DLA SVD+L+ +
Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGVDADMLRNLAEAGITTRDDLAELSVDELIEIT---- 477
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
G ++ +++I+ AR W ++K
Sbjct: 478 -------------GIDEETAKAVILTAREH--WFTEDK 500
>gi|261392135|emb|CAX49635.1| transcription elongation protein nusA (N utilization substance
protein A; L factor) [Neisseria meningitidis 8013]
gi|325134692|gb|EGC57331.1| transcription termination/antitermination protein nusA [Neisseria
meningitidis M13399]
Length = 500
Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats.
Identities = 211/518 (40%), Positives = 324/518 (62%), Gaps = 30/518 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66
E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR
Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63
Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++
Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTAIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180
R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD
Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 183
Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK
Sbjct: 184 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 243
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++
Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
+V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E +
Sbjct: 304 IVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
+ FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ +
Sbjct: 364 RRLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ +
Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELIEIT---- 477
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
G ++ +++I+ AR W ++K
Sbjct: 478 -------------GVNEETAKAVILTAREH--WFTEDK 500
>gi|27904831|ref|NP_777957.1| transcription elongation factor NusA [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
gi|31340243|sp|Q89AF4|NUSA_BUCBP RecName: Full=Transcription elongation protein nusA
gi|27904229|gb|AAO27062.1| N utilization substance protein A [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
Length = 497
Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats.
Identities = 185/508 (36%), Positives = 313/508 (61%), Gaps = 19/508 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV+IN + G+ FR
Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALECALAIATKKKYDQEIDVRVKINRKNGNFETFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV +V T +I+L+ A+ D ++ + + D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLVVNQVLQPTKEITLEAAKFEDVTVKVNDYIEDKMISVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F+ G+I++G VK++ ++ +DLGN+ + +I +++ + REN R GDRV+
Sbjct: 122 ERAMIVEQFRKYFGKILTGIVKKINRESITLDLGNNAEALILKEDMLPRENFRLGDRVRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y + E RG Q+ ++R+ P+ +++LF +EVPEI I+++K+ +RDPGSRAK+AV S+
Sbjct: 182 VLYAIYPESRGAQLFVTRSKPEMLIELFKIEVPEIGEEIIEIKSAARDPGSRAKIAVKSN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D +D VGACVGMRG+RVQAV +EL E+IDIV+W +SA F+IN++ PA V+ +VLDED
Sbjct: 242 DKRVDAVGACVGMRGARVQAVSSELCGERIDIVLWDKNSAQFIINSMAPAEVSSIVLDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
I++ V L+ AIGR GQNVRLASQL+GW I+++T ++ + Q++ ++ F +
Sbjct: 302 RHTIDIAVDSNNLAQAIGRNGQNVRLASQLSGWEINVMTVDDLKLKHQEEKDKILNIFTK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+ +D+ I+++L+ EGF+ +EEL + +E+ +I +E A I+ A++ L I++
Sbjct: 362 YLKIDQKISNILIDEGFSSIEELVYIPFNELLNINSITQELAYSIRESAKKALCAIELEN 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
+K I E + ++L ++ G++ K+ L + I ++EDLA +DDL+
Sbjct: 422 KKVINERKLHKDLLNLKGMNQKLAFKLAKKNIFSLEDLAEQGIDDLIDIE---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512
+ +I+ AR + W
Sbjct: 472 -------NLNSNTAGMLIMAAR-NICWF 491
>gi|110833189|ref|YP_692048.1| transcription elongation factor [Alcanivorax borkumensis SK2]
gi|110646300|emb|CAL15776.1| transcription elongation factor [Alcanivorax borkumensis SK2]
Length = 525
Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats.
Identities = 204/520 (39%), Positives = 324/520 (62%), Gaps = 24/520 (4%)
Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISL 62
A E+L +A+ V+ EK + RDV+ + ++ A + + +IRV+I+ E+G+
Sbjct: 23 AMNKEILLVAETVSNEKGVSRDVIFEAIELALAAATKKRFKQEDVEIRVDIDRESGNARS 82
Query: 63 FRLLEVVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
FR+ VV + E + Q++L A ++D S+ IG + + + FGR+A Q+AKQVI+Q
Sbjct: 83 FRVWHVVPDEELFEFGKQLTLDEAHEQDTSLQIGDIWEEEVESEAFGRIAAQTAKQVIVQ 142
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPG 179
KVREAER + E++D++G+++SGTVK+ ++++DLG + + +I R+ I RE +R
Sbjct: 143 KVREAERRQIVEEYRDRIGDLVSGTVKKASRDSIVLDLGGNAEALITREHMIPREAVRQN 202
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
DRV++Y+ V E RGPQ+ SR P +V+LF +EVPEI ++++K +RDPGSRAK+
Sbjct: 203 DRVRAYLLGVNEENRGPQLFASRACPDMLVELFKIEVPEIGEELIEIKGAARDPGSRAKI 262
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV ++D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A VINA++PA V +
Sbjct: 263 AVKTNDQRIDPVGACVGMRGARVQAVSNELAGERIDIVLWDDNPAQLVINAMQPAEVASI 322
Query: 300 VLDEDVGRIEVIVPKEQ-LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
V+DE+ +++ V E L+ AIGR GQN+RLAS+LTGW ++++T ++ ++++ +
Sbjct: 323 VMDEESHSMDIAVEDESALAQAIGRSGQNIRLASELTGWELNVMTIDDAESKQEQEAEQA 382
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
Q F+ + VDE +A +LV EGF+ +EE+A V E+ +I+GFDEE ++ RA++ L
Sbjct: 383 LQTFINELEVDEDVAGVLVDEGFSTLEEVAYVPEEEMLAIDGFDEEIVELLRQRAKDALL 442
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ ++K + +E+L ++ G+D ++ V L I TMEDLA +VDDLL
Sbjct: 443 TKALVSEEKFDQAEPAEDLLNMEGMDRELAVELASRDIVTMEDLAEQAVDDLLEIE---- 498
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518
G +++ +I+ AR W E E A
Sbjct: 499 -------------GLSEERAAELIMTARAP--WFEGEDEA 523
>gi|261856064|ref|YP_003263347.1| NusA antitermination factor [Halothiobacillus neapolitanus c2]
gi|261836533|gb|ACX96300.1| NusA antitermination factor [Halothiobacillus neapolitanus c2]
Length = 491
Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats.
Identities = 218/509 (42%), Positives = 321/509 (63%), Gaps = 24/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L +ADAV+ EK +DR+V+ + ++ +AAR +G D RV+I+ ETGD FR +
Sbjct: 4 EILFVADAVSNEKGVDREVIFEAIEAALAQAARKRHGGDIDTRVQIDHETGDYRTFRRWQ 63
Query: 68 VVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVE E ++ L+ A+ DP I +G V + + ++FGR+A Q+AKQVI+QKVREA
Sbjct: 64 VVEGDSSEFPEREMILEAAQMDDPDIKVGEFVEEEIESVEFGRIAAQAAKQVIVQKVREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER + + D+ G +I G +KR++ GNVI+DLG + + +I RDE I RE +RPGDR++
Sbjct: 124 ERRQIVDAYIDRKGSLIMGLIKRIDRGNVILDLGGNVEALIPRDEMIGREAVRPGDRLRG 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
Y+ DVR E RGPQ+ +SRT PQF+++LF +EVPEI G++++K +RDPG RAK+AV S
Sbjct: 184 YLADVRHEPRGPQLFVSRTAPQFLIELFKLEVPEIEQGLIEIKGAARDPGLRAKIAVESR 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
DS IDPVG CVGMRGSRVQ+V EL E++DI++W + A FVINA+ PA V +V+DED
Sbjct: 244 DSRIDPVGTCVGMRGSRVQSVTNELNGERVDIIIWDSNPAQFVINAMSPAEVVSIVVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V V +E+LS AIGR GQNVRLASQLTGW ++++ EEE + + T+ FM+
Sbjct: 304 RHSMDVAVTEEKLSQAIGRGGQNVRLASQLTGWHLNVMGEEEAVAKVETETRRATEAFMR 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VDE +A +LV GF+ +EE+A V +E+ +EGFDE E++ RAR+ L I+
Sbjct: 364 DLDVDEDVAAVLVEAGFSSLEEIAYVPTAELLDVEGFDEGIVEELRNRARDALLVQAISD 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
E ++ + G+ ++ L G+ T +DLA SVD++ +
Sbjct: 424 DA--GESTEELDIAQLEGMTPELLTILNAAGVHTSDDLAELSVDEMTAFD---------- 471
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513
G + + +I+ AR W
Sbjct: 472 -------GVDEALAQQLIMAARAP--WFA 491
>gi|325130689|gb|EGC53429.1| transcription termination/antitermination protein nusA [Neisseria
meningitidis OX99.30304]
Length = 500
Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats.
Identities = 211/518 (40%), Positives = 324/518 (62%), Gaps = 30/518 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66
E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR
Sbjct: 4 EMLQLAEALAGEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63
Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++
Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180
R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD
Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 183
Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK
Sbjct: 184 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 243
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++
Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
+V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E +
Sbjct: 304 IVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
+ FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ +
Sbjct: 364 RRLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ +
Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELIEIT---- 477
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
G ++ +++I+ AR W ++K
Sbjct: 478 -------------GVNEETAKAVILTAREH--WFTEDK 500
>gi|218768664|ref|YP_002343176.1| transcription elongation factor NusA [Neisseria meningitidis Z2491]
gi|121052672|emb|CAM09013.1| N utilisation substance protein A [Neisseria meningitidis Z2491]
Length = 505
Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats.
Identities = 211/518 (40%), Positives = 324/518 (62%), Gaps = 30/518 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66
E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR
Sbjct: 9 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 68
Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++
Sbjct: 69 LIVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 128
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180
R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD
Sbjct: 129 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 188
Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK
Sbjct: 189 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 248
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++
Sbjct: 249 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 308
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
+V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E +
Sbjct: 309 IVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 368
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
+ FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ +
Sbjct: 369 RRLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 428
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ +
Sbjct: 429 TMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELIEIT---- 482
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
G ++ +++I+ AR W ++K
Sbjct: 483 -------------GVNEETAKAVILTAREH--WFTEDK 505
>gi|313667982|ref|YP_004048266.1| N utilisation substance protein A [Neisseria lactamica ST-640]
gi|313005444|emb|CBN86879.1| N utilisation substance protein A [Neisseria lactamica 020-06]
Length = 500
Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats.
Identities = 209/518 (40%), Positives = 324/518 (62%), Gaps = 30/518 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66
E+LQ+A+A+A EK++D +VV + ++ AA+ G D+RV+I+ +TG+ FR
Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKAGREHMDVRVQIDRDTGEYQTFRRW 63
Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++
Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTAIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180
R+AER++ EF +I++GTVKRVE +IV++ G D +I RD++I REN R GD
Sbjct: 124 RDAEREQNLNEFLATREDIVAGTVKRVERHGIIVEVVAGKLDALIPRDQSIPRENFRSGD 183
Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
R+++ V QV+LSRT F+ KL+ EVPEI +G++++++V+RDPG RAK
Sbjct: 184 RIRALFQRVEEIGNTGRKQVILSRTSADFLAKLYANEVPEISDGLLEIRSVARDPGQRAK 243
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++
Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
+V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E +
Sbjct: 304 IVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
+ FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ +
Sbjct: 364 RRLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ I ++K+ E VSE++ ++ G+D+ + L E GI T +DLA SVD+L+ +
Sbjct: 424 TMAIAAEEKLGE--VSEDMRNLEGVDADMLRNLAEAGITTRDDLAELSVDELIEIT---- 477
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
G ++ +++I+ AR W ++K
Sbjct: 478 -------------GIDEETAKAVILTAREH--WFTEDK 500
>gi|309378387|emb|CBX22988.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 496
Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats.
Identities = 208/517 (40%), Positives = 322/517 (62%), Gaps = 30/517 (5%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLLE 67
+LQ+A+A+A EK++D +VV + ++ AA+ G D+RV+I+ +TG+ FR
Sbjct: 1 MLQLAEALASEKNVDAEVVFQALEFALSTAAKKKAGREHMDVRVQIDRDTGEYQTFRRWL 60
Query: 68 VV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++R
Sbjct: 61 IVADEDYTYPDIEKTIEEIQEEIPGTAIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRIR 120
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGDR 181
+AER++ EF +I++GTVKRVE +IV++ G D +I RD++I REN R GDR
Sbjct: 121 DAEREQNLNEFLATREDIVTGTVKRVERHGIIVEVVAGKLDALIPRDQSIPRENFRSGDR 180
Query: 182 VKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
+++ V QV+LSRT F+ KL+ EVPEI +G+++++AV+RDPG RAK+
Sbjct: 181 IRALFQRVEEIGNTGRKQVILSRTSADFLAKLYANEVPEISDGLLEIRAVARDPGQRAKV 240
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP A FV++AL PA V+++
Sbjct: 241 AVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPKPAQFVMSALSPAEVSRI 300
Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E +
Sbjct: 301 VIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAIR 360
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+ FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ +
Sbjct: 361 RLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAILT 420
Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479
+ I ++K+ E VS+++ ++ G+D+ + L E GI T +DLA SVD+L+ +
Sbjct: 421 MAIAAEEKLGE--VSDDMRNLEGVDADMLRNLAEAGITTRDDLAELSVDELIEIT----- 473
Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
G ++ +++I+ AR W ++K
Sbjct: 474 ------------GIDEETAKAVILTAREH--WFTEDK 496
>gi|237748745|ref|ZP_04579225.1| transcription elongation protein [Oxalobacter formigenes OXCC13]
gi|229380107|gb|EEO30198.1| transcription elongation protein [Oxalobacter formigenes OXCC13]
Length = 519
Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats.
Identities = 205/494 (41%), Positives = 316/494 (63%), Gaps = 6/494 (1%)
Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66
LE+LQ+ DA+A EK++D+++VL + ++ A + Y +DIRV I+ TG++ FR
Sbjct: 3 LEILQLVDALAREKNVDKEIVLGALEHALALATKKRYPGDADIRVSIDRTTGEVETFRRW 62
Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
VV + ++ ++ A+++ P I++ + D + +D GR Q KQ+++Q++R
Sbjct: 63 HVVPDEAGLQQPDQEMLYFEAKEQFPDIEVDDYIEDHIESIDLGRRFAQDTKQIVLQRIR 122
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183
+AER++ +F D+ +++GTVKR+E G+ IV+ G + + R++ I +ENLR GDRV+
Sbjct: 123 DAEREQVLQDFLDRGDSLVTGTVKRMERGDAIVESGKVEARLPREQMIPKENLRVGDRVR 182
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+YI V R RGPQV+LSRT P+F+VKLF +EVPEI G++++K+ +RDPG RAK+AVF+
Sbjct: 183 AYILRVERGARGPQVILSRTAPEFIVKLFELEVPEIEQGLLEIKSAARDPGVRAKIAVFT 242
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
SD IDP+G CVGMRGSRVQAV EL E++DIV+WS D A FVI AL PA VT +V+DE
Sbjct: 243 SDKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDE 302
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
D ++VIV +E L++AIGR GQNVRLA++LTGW I+I+T EE + + E + FM
Sbjct: 303 DKHAMDVIVDEENLAIAIGRSGQNVRLATELTGWKINIMTAEESADKSALEKAELQKLFM 362
Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423
+ ++VD+ +A +L+ EGF +EE+A V I E+ IE FDE+T EI+ RAR+ L I
Sbjct: 363 ERLDVDQEVADILIEEGFTALEEIAYVPIGEMLEIEAFDEDTVNEIRQRARDALITEAIA 422
Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483
++ + + L ++ G+D ++ LG G+KT++ A + D+ G +
Sbjct: 423 SEEGMAGMEEE--LVNLEGMDRQVAGKLGLAGVKTLQRFAELAYDEF-GAILALPVERAR 479
Query: 484 FDGFLSSLGTPKDQ 497
D+
Sbjct: 480 QLLENEFADVTDDE 493
>gi|325132774|gb|EGC55456.1| transcription termination/antitermination protein nusA [Neisseria
meningitidis M6190]
Length = 500
Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats.
Identities = 211/518 (40%), Positives = 323/518 (62%), Gaps = 30/518 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66
E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR
Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63
Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++
Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180
R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD
Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 183
Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK
Sbjct: 184 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 243
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++
Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
+V+DED ++VIV + QL+LAIGR GQNVRLAS LTGW ++I+T E +
Sbjct: 304 IVIDEDKHAVDVIVDENQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
+ FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ +
Sbjct: 364 RRLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ +
Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELIEIT---- 477
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
G ++ +++I+ AR W ++K
Sbjct: 478 -------------GVNEETAKAVILTAREH--WFTEDK 500
>gi|325198741|gb|ADY94197.1| transcription termination/antitermination protein nusA [Neisseria
meningitidis G2136]
Length = 500
Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats.
Identities = 211/518 (40%), Positives = 324/518 (62%), Gaps = 30/518 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66
E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR
Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63
Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++
Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTAIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180
R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD
Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 183
Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK
Sbjct: 184 RIRALFLRVEEIGNIGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 243
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++
Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
+V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E +
Sbjct: 304 IVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
+ FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ +
Sbjct: 364 RRLFMDYLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ +
Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELIEIT---- 477
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
G ++ +++I+ AR W ++K
Sbjct: 478 -------------GVNEETAKAVILTAREH--WFTEDK 500
>gi|161830897|ref|YP_001597277.1| transcription elongation factor NusA [Coxiella burnetii RSA 331]
gi|161762764|gb|ABX78406.1| transcription termination factor NusA [Coxiella burnetii RSA 331]
Length = 503
Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats.
Identities = 208/520 (40%), Positives = 329/520 (63%), Gaps = 27/520 (5%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS-DIRVEINPETGDISLFR 64
++L I D+++ E+ + ++V+ + ++ Y IRV I+ +TGD FR
Sbjct: 2 NKDILLIVDSMSNERGVSKEVIFEAIEAALAAVTAKRYEEDDVKIRVAIDQKTGDYESFR 61
Query: 65 LLEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
VVE+ +E +++LK AR+ D +++G V+ +P+ + FGR+AVQ AKQVI+Q
Sbjct: 62 CWTVVEDTNESLEFPNQEMTLKQAREIDSDLEVGDVIEEPVESVKFGRIAVQQAKQVIVQ 121
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPG 179
KVREAER + +++ +VGE++ G VKRV ++I+D+G + + ++ R+E I RE R
Sbjct: 122 KVREAERAKIIRQYEKRVGELVIGVVKRVTRESIILDMGENAEALLLREEMIPREAFRIN 181
Query: 180 DRVKSYIYD-VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
DR+++Y+Y + ++RGPQ+L+SRT P+F+V+LF +EVPEI ++++K +RDPGSRAK
Sbjct: 182 DRLRAYLYSVCQDKKRGPQLLVSRTRPEFLVELFKIEVPEIGEEVIEIKGAARDPGSRAK 241
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++D IDP+GACVGMRGSRVQAV EL E+IDIV+W + A VINA+ PA V
Sbjct: 242 IAVKTNDGRIDPIGACVGMRGSRVQAVSNELGGERIDIVLWDDNPAQLVINAMAPAEVAS 301
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
+V+DED +++ V K+QLS AIGR GQNVRLAS+LTGWT+++++E E + +K+ ++
Sbjct: 302 IVVDEDSHTMDIAVNKDQLSQAIGRSGQNVRLASELTGWTLNVMSEAEMAQKHEKEADKI 361
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
FM+ ++VDE +A LV GF ++EE+A V E+ +EGFDE+ + E+Q RA + L
Sbjct: 362 KTAFMEKLDVDEEVADALVQAGFMNLEEVAYVPKEELQGVEGFDEDISAELQRRAGDVLL 421
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+I Q+ + E +E+L ++PG+ +++ L EN + T +DLA SV DL E
Sbjct: 422 TQEIAKQE-LDEKKPAEDLLTLPGMTTELARQLVENEVLTRDDLAEKSVLDLKEIIE--- 477
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518
+ ++I+ AR W +E+
Sbjct: 478 --------------IDDEAAANLIMAARAH--WFAEEESE 501
>gi|152980158|ref|YP_001354186.1| N utilization substance protein A [Janthinobacterium sp. Marseille]
gi|151280235|gb|ABR88645.1| N utilization substance protein A [Janthinobacterium sp. Marseille]
Length = 519
Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats.
Identities = 204/492 (41%), Positives = 315/492 (64%), Gaps = 5/492 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++D+D+V + ++ +A + Y DIRV I+ ETG+ FR
Sbjct: 4 EILLLVDALAREKNVDKDIVFGALEHALAQATKKRYEGDVDIRVSIDRETGEFESFRRWH 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ +I A+++ I++ + +P+ +DFGR Q KQV++Q++R+
Sbjct: 64 VVPDEAGLQLPDQEILHFEAKEQIGDIEVDDYIEEPIESVDFGRRFAQDTKQVVLQRIRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ +F ++ +++GT+KR+E G+ IV+ G + + RD+TI +ENLR GDRV++
Sbjct: 124 AEREQILADFLERGDSLVTGTIKRMERGDAIVESGRIEARLPRDQTIPKENLRIGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI + R RGPQV+LSRT P+F++KLF +EVPEI G++++K+ +RD G RAK+AVF+S
Sbjct: 184 YILRIDRNARGPQVILSRTAPEFIMKLFELEVPEIEQGLLEIKSAARDAGVRAKIAVFTS 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVGMRGSRVQAV EL E++DIV+WS D A FVI AL PA V+ +V+DE+
Sbjct: 244 DKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T EE + Q + FM+
Sbjct: 304 KHAMDVVVDEENLAIAIGRGGQNVRLASELTGWQINIMTAEESADKSQLETAAIRTLFME 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VD+ +A +LV EGFA +EE+A V ISE+ IE FDE+T E++ RAR+ L I
Sbjct: 364 KLDVDQEVADILVDEGFASLEEIAYVPISEMLDIESFDEDTVNELRNRARDALVTEAIAS 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + G+ E L ++ G+D + LG GIKT+ + + D+ +
Sbjct: 424 EEGLE--GMEEALANLEGMDRVMAGKLGLAGIKTLAAFSALAYDEFGAILALPADRARQL 481
Query: 485 DGFLSSLGTPKD 496
T ++
Sbjct: 482 IEDEFKDVTDEE 493
>gi|325128688|gb|EGC51554.1| transcription termination/antitermination protein nusA [Neisseria
meningitidis N1568]
Length = 500
Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats.
Identities = 211/518 (40%), Positives = 323/518 (62%), Gaps = 30/518 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66
E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR
Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63
Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++
Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180
R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD
Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRCGD 183
Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK
Sbjct: 184 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 243
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++
Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
+V+DED ++VIV + QL+LAIGR GQNVRLAS LTGW ++I+T E +
Sbjct: 304 IVIDEDKHAVDVIVDENQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
+ FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ +
Sbjct: 364 RRLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ +
Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELIEIT---- 477
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
G ++ +++I+ AR W ++K
Sbjct: 478 -------------GVNEETAKAVILTAREH--WFTEDK 500
>gi|325142812|gb|EGC65183.1| transcription termination/antitermination protein nusA [Neisseria
meningitidis 961-5945]
gi|325201699|gb|ADY97153.1| transcription termination/antitermination protein nusA [Neisseria
meningitidis M01-240149]
gi|325208565|gb|ADZ04017.1| transcription termination/antitermination protein nusA [Neisseria
meningitidis NZ-05/33]
Length = 500
Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats.
Identities = 211/518 (40%), Positives = 323/518 (62%), Gaps = 30/518 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66
E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR
Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63
Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++
Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTAIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180
R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD
Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 183
Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK
Sbjct: 184 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 243
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++
Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
+V+DED ++VIV + QL+LAIGR GQNVRLAS LTGW ++I+T E +
Sbjct: 304 IVIDEDKHAVDVIVDENQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
+ FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ +
Sbjct: 364 RRLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ +
Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELIEIT---- 477
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
G ++ +++I+ AR W ++K
Sbjct: 478 -------------GVNEETAKAVILTAREH--WFTEDK 500
>gi|254805397|ref|YP_003083618.1| N utilization substance protein A [Neisseria meningitidis alpha14]
gi|254668939|emb|CBA07185.1| N utilization substance protein A [Neisseria meningitidis alpha14]
Length = 500
Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats.
Identities = 211/518 (40%), Positives = 323/518 (62%), Gaps = 30/518 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66
E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR
Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63
Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++
Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTAIQIGEYYEEQLPNESFGRQAAQTAKQIILQRI 123
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180
R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD
Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 183
Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK
Sbjct: 184 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 243
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++
Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
+V+DED ++VIV + QL+LAIGR GQNVRLAS LTGW ++I+T E +
Sbjct: 304 IVIDEDKHAVDVIVDENQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
+ FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ +
Sbjct: 364 RRLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ +
Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELIEIT---- 477
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
G ++ +++I+ AR W ++K
Sbjct: 478 -------------GVNEETAKAVILTAREH--WFTEDK 500
>gi|316984984|gb|EFV63938.1| transcription elongation protein nusA [Neisseria meningitidis
H44/76]
Length = 496
Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats.
Identities = 210/517 (40%), Positives = 323/517 (62%), Gaps = 30/517 (5%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLLE 67
+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR
Sbjct: 1 MLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRWL 60
Query: 68 VV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++R
Sbjct: 61 IVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRIR 120
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGDR 181
+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GDR
Sbjct: 121 DAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGDR 180
Query: 182 VKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK+
Sbjct: 181 IRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAKV 240
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V+++
Sbjct: 241 AVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSRI 300
Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E +
Sbjct: 301 VIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAIR 360
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+ FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ +
Sbjct: 361 RLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAILT 420
Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479
+ I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ +
Sbjct: 421 MAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELIEIT----- 473
Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
G ++ +++I+ AR W ++K
Sbjct: 474 ------------GVNEETAKAVILTAREH--WFTEDK 496
>gi|121635282|ref|YP_975527.1| transcription elongation factor NusA [Neisseria meningitidis FAM18]
gi|120866988|emb|CAM10751.1| N utilisation substance protein A [Neisseria meningitidis FAM18]
Length = 505
Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats.
Identities = 211/518 (40%), Positives = 323/518 (62%), Gaps = 30/518 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66
E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR
Sbjct: 9 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 68
Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++
Sbjct: 69 LIVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 128
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180
R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD
Sbjct: 129 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 188
Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK
Sbjct: 189 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 248
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++
Sbjct: 249 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 308
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
+V+DED ++VIV + QL+LAIGR GQNVRLAS LTGW ++I+T E +
Sbjct: 309 IVIDEDKHAVDVIVDENQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 368
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
+ FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ +
Sbjct: 369 RRLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 428
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ +
Sbjct: 429 TMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELIEIT---- 482
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
G ++ +++I+ AR W ++K
Sbjct: 483 -------------GVNEETAKAVILTAREH--WFTEDK 505
>gi|161870486|ref|YP_001599658.1| transcription elongation factor NusA [Neisseria meningitidis
053442]
gi|161596039|gb|ABX73699.1| N utilisation substance protein A [Neisseria meningitidis 053442]
Length = 496
Score = 435 bits (1118), Expect = e-119, Method: Composition-based stats.
Identities = 210/517 (40%), Positives = 324/517 (62%), Gaps = 30/517 (5%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLLE 67
+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR
Sbjct: 1 MLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRWL 60
Query: 68 VV--EEVENYTCQISLKVARDRDPSI--DIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++R
Sbjct: 61 IVADEDYTYPDVEKTIEEIQEEIPGIAIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRIR 120
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGDR 181
+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GDR
Sbjct: 121 DAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGDR 180
Query: 182 VKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK+
Sbjct: 181 IRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAKV 240
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V+++
Sbjct: 241 AVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSRI 300
Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
V+DED ++VIV ++QL+LAIGR GQNVRLAS+LTGW ++I+T E +
Sbjct: 301 VIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASELTGWQLNIMTSAEADERNAAEDAAIR 360
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+ FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ +
Sbjct: 361 RLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAILT 420
Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479
+ I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ +
Sbjct: 421 MAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELIEIT----- 473
Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
G ++ +++I+ AR W ++K
Sbjct: 474 ------------GVNEETAKAVILTAREH--WFTEDK 496
>gi|289825801|ref|ZP_06544969.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
Length = 472
Score = 434 bits (1116), Expect = e-119, Method: Composition-based stats.
Identities = 192/482 (39%), Positives = 297/482 (61%), Gaps = 24/482 (4%)
Query: 40 RSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSD 99
+ Y D+RVEI+ ++GD FR +VEEV T +I+L+ AR D S+++G V D
Sbjct: 8 KKKYEQEIDVRVEIDRKSGDFDTFRRWLIVEEVTMPTKEITLEAARFEDESLNVGDYVED 67
Query: 100 PLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL- 158
+ + F R+ Q+AKQVI+QKVREAER +F+D+ GEI++G VK+V N+ +++
Sbjct: 68 QIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIK 127
Query: 159 -----GNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFH 213
GN++ VI R++ + REN RPGDR++ +Y VR E RG Q+ ++R+ P+ +++LF
Sbjct: 128 SEGMAGNAEAVILREDMLPRENFRPGDRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFR 187
Query: 214 MEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEK 273
+EVPEI ++++KA +RDPGSRAK+AV ++D IDPVGACVGMRG+RVQAV TEL E+
Sbjct: 188 IEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGER 247
Query: 274 IDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQ 333
IDIV+W + A FVINA+ PA V +V+DED +++ V L+ AIGR GQNV LASQ
Sbjct: 248 IDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVHLASQ 307
Query: 334 LTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKIS 393
L+GW ++++T ++ Q + + + F + +++DE A +LV EGF+ +EELA V +
Sbjct: 308 LSGWELNVMTVDDLQAKHQAEAHAAIEIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMK 367
Query: 394 EIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGE 453
E+ I+G DE T ++ RA+ L + + + + +++L ++ G+D + L
Sbjct: 368 ELLEIDGLDEPTVEALRERAKNALATLAQDQEASLGDNKPADDLLNLEGLDRDMAFKLAA 427
Query: 454 NGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
G+ T+EDLA +DDL G ++ +I+ AR + W
Sbjct: 428 RGVCTLEDLADQGIDDLADIE-----------------GLTDEKAGELIMAAR-NICWFG 469
Query: 514 KE 515
E
Sbjct: 470 DE 471
>gi|261379110|ref|ZP_05983683.1| L Factor [Neisseria cinerea ATCC 14685]
gi|269144431|gb|EEZ70849.1| L Factor [Neisseria cinerea ATCC 14685]
Length = 500
Score = 434 bits (1115), Expect = e-119, Method: Composition-based stats.
Identities = 208/518 (40%), Positives = 320/518 (61%), Gaps = 30/518 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66
E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR
Sbjct: 4 EILQLAEALASEKNVDAEVVFQALEFALSSAAKKKADREHMDVRVQINRDTGEYQTFRRW 63
Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++
Sbjct: 64 LIVADEDYTYPDIEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180
R+AER++ EF +I++GTVKRVE +IV++ G D +I RD+ I REN R GD
Sbjct: 124 RDAEREQNLNEFLAVKEDIVTGTVKRVERHGIIVEIIAGKLDALIPRDQAIPRENFRSGD 183
Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
R+++ V QV+LSRT F+ KL+ EVPEI +G+++++AV+RDPG RAK
Sbjct: 184 RIRALFLRVDEIGNTGRKQVILSRTSGDFLAKLYANEVPEISDGMLEIRAVARDPGQRAK 243
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV+ AL PA V++
Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMGALSPAEVSR 303
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
+V+DE+ ++VIV ++QL+LAIGR GQNVRLAS+LTGW ++I+T E +
Sbjct: 304 IVIDEEKHAVDVIVSEDQLALAIGRGGQNVRLASELTGWQLNIMTSAEADKRNAAEDAAI 363
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
F+ +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ +
Sbjct: 364 RTLFVSHLNVDEETADILVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
I I ++K+ E VS+++ S+ G+D+ + + L E I T +DLA SVD+L+ +
Sbjct: 424 TIAIAAEEKLGE--VSDDMRSLEGVDADMLLKLAEADITTRDDLAELSVDELIEIT---- 477
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
G ++ +++I+ AR W + K
Sbjct: 478 -------------GVNEETAKAVILTAREH--WFTENK 500
>gi|288940250|ref|YP_003442490.1| NusA antitermination factor [Allochromatium vinosum DSM 180]
gi|288895622|gb|ADC61458.1| NusA antitermination factor [Allochromatium vinosum DSM 180]
Length = 499
Score = 434 bits (1115), Expect = e-119, Method: Composition-based stats.
Identities = 193/508 (37%), Positives = 306/508 (60%), Gaps = 25/508 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + +AV+ EK + V+ + ++ A R +G D+RV I+ +TG FR E
Sbjct: 4 EILNVVEAVSNEKDVPEGVIFEAIEAALASATRKKHGGEIDVRVTIDRKTGSYRTFRRWE 63
Query: 68 VVEEVEN-----YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+V + E+ QI+ A +P + IG + + + FGR+A Q+AKQVI+QKV
Sbjct: 64 IVSDPESGMLEAPARQITASAAAILEPELSIGDFMEEEIESELFGRIAAQTAKQVIVQKV 123
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
R+AER + F + G++++G VK+ E G +++DLGN+ + ++ RD I RE++RPGDR
Sbjct: 124 RDAERAKIVDAFASRQGQLVTGIVKKAERGTILLDLGNNAEALVPRDHVIPRESVRPGDR 183
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++ Y+YDVR EQ+GPQ+ +SRT P+ +++LF +EVPE+ G++++ +RDPG RAK+AV
Sbjct: 184 LRGYLYDVRSEQKGPQLFVSRTAPELLIELFKLEVPEVGEGLIEILGAARDPGVRAKIAV 243
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
+ D IDPVGACVGMRGSRVQAV EL E++DI++W + A FVINA+ PA V +V+
Sbjct: 244 RTRDPRIDPVGACVGMRGSRVQAVSNELNGERVDIILWDENPAQFVINAMSPADVVSIVI 303
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DE+ ++V V +E L+ AIGR GQNVRLA+QL+GW ++++ E++ + +++ Q
Sbjct: 304 DEEARSMDVAVKEENLAQAIGRFGQNVRLATQLSGWELNVMNEKDAAAKSEQEARRSAQV 363
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
FM + +DE +A LLV EGF+ V+E+A V + E+ +I+ D+ET ++ RA + L
Sbjct: 364 FMDQLGIDEGLATLLVEEGFSSVDEVAYVPLDEMRAIDELDDETIELLRERANDVLVTRA 423
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
I ++ G+S L ++ G+D + L E GI T
Sbjct: 424 IATEEVDEVGGMS--LSALEGMDEALVEVLAERGIAT-----------------LDDLAD 464
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKM 509
D + G +++ +I+ AR M
Sbjct: 465 LAVDDLMEIEGMDEERAARLIMKAREPM 492
>gi|157825875|ref|YP_001493595.1| transcription elongation factor NusA [Rickettsia akari str.
Hartford]
gi|157799833|gb|ABV75087.1| transcription elongation factor NusA [Rickettsia akari str.
Hartford]
Length = 503
Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats.
Identities = 243/511 (47%), Positives = 358/511 (70%), Gaps = 17/511 (3%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
M + +E+LQI D+VA EK I +++++S + ++Q A R YG +I+ +IN +TG+I
Sbjct: 1 MSNIGNVEILQIIDSVAREKGISKEILVSTVEQAVQVAGRKKYGNEYNIKAQINRKTGEI 60
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
+L R+L++VE+V++Y QISL A ++P IG + + LPP+D RV+ Q+AKQVI Q
Sbjct: 61 NLLRILKIVEDVQDYLTQISLAEALRKNPEAKIGDEIYEYLPPIDHARVSAQAAKQVITQ 120
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
+V EAER++QY +FKD+ GEII+G VKR+EYG++IVDL ++ +I++D+ I+ EN +P D
Sbjct: 121 RVIEAEREKQYHDFKDRKGEIINGIVKRIEYGDIIVDLSRAEAIIKKDQLINGENFKPND 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
R+K+Y+ DVR+E +GPQ+ LSR Q +VKLF +EVPEI I+Q+K+V+RDPGSRAK+A
Sbjct: 181 RIKAYVQDVRQETKGPQIFLSRVDNQMLVKLFKIEVPEILEDIIQIKSVARDPGSRAKIA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA---LRPAIVT 297
VF+SDSSIDPVG+CVG+RG+RV+AV EL EKIDIV+WS D A F++NA L P +T
Sbjct: 241 VFASDSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNALAPLAPGEIT 300
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
K+++DED ++EV+V +E S+AIGRRGQNVRLAS+LTGW IDI+TEE++S R ++F
Sbjct: 301 KILIDEDRHKVEVVVSQENQSIAIGRRGQNVRLASKLTGWNIDIMTEEQESKRRNEEFVT 360
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
TQ FM+A++V+E+I LL GF VE++A ++S + IEGF+EE AVEI+ RA Y+
Sbjct: 361 STQLFMEALDVEEVIGQLLSVTGFNSVEQIASSEVSTLTRIEGFEEELAVEIKNRAVNYV 420
Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477
+ + + KK+ +LGV +EL I + ++ + E GIKT+EDL SV++
Sbjct: 421 DLKNEKIIKKLEDLGVEQELIDILALPLELILKFAEYGIKTIEDLGEMSVNE-------- 472
Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYK 508
F + + ++ +I AR
Sbjct: 473 ------FKNLAPNSNITDENIKLLIKTARRH 497
>gi|319944110|ref|ZP_08018388.1| N utilization substance A [Lautropia mirabilis ATCC 51599]
gi|319742604|gb|EFV95013.1| N utilization substance A [Lautropia mirabilis ATCC 51599]
Length = 496
Score = 430 bits (1107), Expect = e-118, Method: Composition-based stats.
Identities = 207/510 (40%), Positives = 329/510 (64%), Gaps = 23/510 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + DA+A EK++ RDVV + + ++ A + Y DIRV I+ E G FR +
Sbjct: 5 ELLLMVDALAREKNVPRDVVFAALESALASAMKKRYKDEVDIRVAISREDGSYRGFRRWQ 64
Query: 68 VVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV + E ++ QI L AR +DP I + + + L ++FGR+ Q+AKQVI+QK+R+A
Sbjct: 65 VVPDGELDDHDLQIILSEARKQDPDIQLEEFIEEELEEIEFGRIGAQAAKQVILQKIRDA 124
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER++ +F + ++SGT+KRV+ I++ G + + RD+ I +ENLR GDRV+++
Sbjct: 125 EREQIINDFLSRGDSLLSGTIKRVDREGAIIESGRIEARLPRDQMIPKENLRNGDRVRAW 184
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ + RE RGPQ+ LSRT P+F++KLF +EVPEI G++Q++A +RDPG RAK+AV ++D
Sbjct: 185 VSRINREGRGPQLFLSRTAPEFIMKLFELEVPEIEQGLLQIRAAARDPGVRAKIAVHATD 244
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
S +DP+G CVG+RGSRVQAV EL E++DIV+WS D A FVI AL PA V+ +++DE+
Sbjct: 245 SRVDPIGTCVGVRGSRVQAVTQELAGERVDIVLWSEDPAQFVIGALAPANVSSILVDEER 304
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
++V+V ++ L+LAIG G+NVRLAS+LTGW I++++ EE ++ + FM+
Sbjct: 305 HVMDVVVDEDNLALAIGTGGRNVRLASELTGWQINLMSAEESEKKQEDERAAIRGVFMER 364
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425
++VD +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR L I +
Sbjct: 365 LDVDAEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVNELRERARNALLTQAIATE 424
Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485
+K+ E +++L S+ G+D ++ V L E ++T +DLA +VD+L+ +E
Sbjct: 425 EKLNET--ADDLLSLEGMDRELAVKLAEANVRTRDDLAELAVDELIEITE---------- 472
Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
+++ +++I+ AR W +E
Sbjct: 473 -------LDEERAKALILKAREH--WFVEE 493
>gi|261364309|ref|ZP_05977192.1| transcription termination/antitermination protein NusA [Neisseria
mucosa ATCC 25996]
gi|288567563|gb|EFC89123.1| transcription termination/antitermination protein NusA [Neisseria
mucosa ATCC 25996]
Length = 500
Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats.
Identities = 205/518 (39%), Positives = 319/518 (61%), Gaps = 30/518 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66
E+LQ+A+A+A EK+++ +VV + ++ AA+ D+RVEI+ +TG+ FR
Sbjct: 4 EMLQLAEALASEKNVEAEVVFQALEFALSTAAKKKADREHMDVRVEIDRDTGEYHTFRRW 63
Query: 67 EVV--EEVENYTCQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++
Sbjct: 64 LIVADEDYTYPDLEKTIEEIQEEIPGTDIQIGDYYEETLPNEGFGRQAAQTAKQIILQRI 123
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180
R+AER++ EF +I+SGTVKRVE +IV++ G D +I R++ I REN R GD
Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVPGKLDALIPREQMIPRENFRGGD 183
Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
R+++ V QV+LSRT F+ KL+ MEVPEI +G+++++ V+RDPG RAK
Sbjct: 184 RIRALFLRVDEIGNTGRKQVILSRTSGDFLAKLYEMEVPEIADGLLEIREVARDPGQRAK 243
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WS ++A FV+NAL PA V++
Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELAGERIDVVLWSSETAEFVMNALSPAEVSR 303
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
+V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T EE +
Sbjct: 304 IVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTVEEADERTAAEDAAI 363
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
F +N+D+ A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ +
Sbjct: 364 RDLFTAHLNIDDETADILVEEGFATLEEVAYVPAAELLAIEGFDEEIVETLRNRARDAIL 423
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ I ++K+ E VS+++ ++ G+DS + L E G+ T +DLA +VD+L+ +
Sbjct: 424 TMAIASEEKLEE--VSDDMRNLDGVDSDMLRKLAEAGVTTRDDLAELAVDELIEIT---- 477
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
G ++ + +I+ AR W +E
Sbjct: 478 -------------GVDEEAAKKVILAAREH--WFTEEN 500
>gi|329915249|ref|ZP_08276237.1| Transcription termination protein NusA [Oxalobacteraceae bacterium
IMCC9480]
gi|327544954|gb|EGF30295.1| Transcription termination protein NusA [Oxalobacteraceae bacterium
IMCC9480]
Length = 519
Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats.
Identities = 198/492 (40%), Positives = 308/492 (62%), Gaps = 5/492 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++D+D+V + ++ +A + Y DIRV I+ +TG FR
Sbjct: 4 EVLLLVDALAREKNVDKDIVFGALEHALSQATKKRYEGDVDIRVTIDRDTGLFESFRRWH 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ +I A ++ I++ + +P+ +DFGR Q KQV++Q++R+
Sbjct: 64 VVPDEAGLQLPDQEILHFEALEQISDIEVDDHIEEPIESVDFGRRFAQDTKQVVLQRIRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ +F ++ +++GT+KR+E G+ IV+ G + + RD+ I +ENLR GDRV++
Sbjct: 124 AEREQILQDFLERGDSMVTGTIKRMERGDAIVESGKIEARLPRDQMIPKENLRIGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+I V R RGPQV+LSRT P+F++KLF +EVPEI G++ +K+ +RD G RAK+AVF+S
Sbjct: 184 FILRVDRNARGPQVILSRTSPEFIMKLFELEVPEIEQGLLIIKSAARDAGVRAKIAVFTS 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVGMRGSRVQAV EL E++DIV+WS D A FVI AL PA V+ +V+DE+
Sbjct: 244 DKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V +E L++AIGR GQNVRLA++LT W I+I+T EE + + FM
Sbjct: 304 KHAMDVVVDEENLAIAIGRGGQNVRLAAELTNWQINIMTAEESASKSANETAAIRALFMA 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VD+ +A +LV EGFA +EE+A V ISE+ IE FDE+T E++ RAR+ L I
Sbjct: 364 KLDVDQEVADILVDEGFASLEEIAYVPISEMLEIESFDEDTVNELRTRARDALVTEAIAS 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++ + G+ + L ++ G+D LG G+KT+ +G + D+ +
Sbjct: 424 EEGLE--GMDDALATMEGMDRVTAGKLGLAGVKTLAAFSGLAYDEFGAILALPADRARQL 481
Query: 485 DGFLSSLGTPKD 496
T ++
Sbjct: 482 IDDEFKDVTDEE 493
>gi|255066627|ref|ZP_05318482.1| transcription termination/antitermination protein NusA [Neisseria
sicca ATCC 29256]
gi|255049211|gb|EET44675.1| transcription termination/antitermination protein NusA [Neisseria
sicca ATCC 29256]
Length = 500
Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats.
Identities = 203/518 (39%), Positives = 319/518 (61%), Gaps = 30/518 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66
E+LQ+A+A+A EK+++ +VV + ++ AA+ D+RVEI+ +TG+ +R
Sbjct: 4 EMLQLAEALASEKNVEAEVVFQALEFALSTAAKKKADREHMDVRVEIDRDTGEYHTYRRW 63
Query: 67 EVV--EEVENYTCQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++
Sbjct: 64 LIVADEDYTYPDLEKTIEEIQEEIPGTDIQIGDYYEETLPNEGFGRQAAQTAKQIILQRI 123
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180
R+AER++ EF +I+SGTVKRVE +IV++ G D +I R++ I REN R GD
Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVPGKLDALIPREQMIPRENFRGGD 183
Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
R+++ V QV+LSRT F+ KL+ MEVPEI +G+++++ V+RDPG RAK
Sbjct: 184 RIRALFLRVDEIGNTGRKQVILSRTSGDFLAKLYEMEVPEIADGLLEIREVARDPGQRAK 243
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WS ++A FV+NAL PA V++
Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELAGERIDVVLWSSETAEFVMNALSPAEVSR 303
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
+V+D+D ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T EE +
Sbjct: 304 IVIDDDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTVEEADERTAAEDAAI 363
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
F +N+D+ A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ +
Sbjct: 364 RDLFTAHLNIDDETADILVEEGFATLEEVAYVPAAELFAIEGFDEEIVETLRNRARDAIL 423
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ I ++K+ E VS+++ ++ G+DS + L E G+ T +DLA +VD+L+ +
Sbjct: 424 TMAIASEEKLEE--VSDDMRNLDGVDSDMLRKLAEAGVTTRDDLAELAVDELIEIT---- 477
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
G ++ + +I+ AR W +E
Sbjct: 478 -------------GVDEEAAKKVILAAREH--WFTEEN 500
>gi|254428350|ref|ZP_05042057.1| NusA N-terminal domain family [Alcanivorax sp. DG881]
gi|196194519|gb|EDX89478.1| NusA N-terminal domain family [Alcanivorax sp. DG881]
Length = 502
Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats.
Identities = 202/518 (38%), Positives = 324/518 (62%), Gaps = 24/518 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFR 64
E+L +A+ V+ EK + RDV+ + ++ A + + +IRV+I+ +G+ FR
Sbjct: 2 NKEILLVAETVSNEKGVSRDVIFEAIELALAAATKKRFKQEDVEIRVDIDRVSGNAKSFR 61
Query: 65 LLEVVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+ VV + E + Q++L A ++D S+ IG + + + FGR+A Q+AKQVI+QKV
Sbjct: 62 VWHVVPDEELYEFGKQLTLDEAHEQDTSLQIGDIWEEEVESEAFGRIAAQTAKQVIVQKV 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
REAER + E++D++G+++SGTVK+ ++I+DLG + + +I R+ I RE +R DR
Sbjct: 122 REAERRQIVEEYRDRIGDLVSGTVKKASRDSIILDLGGNAEALITREHMIPREAVRQNDR 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+++Y+ V E RGPQ+ SR P +++LF +EVPEI ++++K +RDPGSRAK+AV
Sbjct: 182 IRAYLLGVNEENRGPQLFASRACPDMLIELFKIEVPEIGEELIEIKGAARDPGSRAKIAV 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
++D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A VINA++PA V +V+
Sbjct: 242 KTNDQRIDPVGACVGMRGARVQAVSNELAGERIDIVLWDDNPAQLVINAMQPAEVASIVM 301
Query: 302 DEDVGRIEVIVPKEQ-LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
DE+ +++ V E L+ AIGR GQN+RLAS+LTGW ++++T ++ ++++ + Q
Sbjct: 302 DEESHSMDIAVEDESALAQAIGRSGQNIRLASELTGWELNVMTIDDAETKQEEEAEQALQ 361
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
F+ ++VDE +A +LV EGF+ +EE+A V E+ +I+GFDEE ++ RA++ L
Sbjct: 362 TFINELDVDEDVAGVLVDEGFSTLEEVAYVPEEEMLAIDGFDEEIVELLRQRAKDALLTK 421
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ ++K + +E+L ++ G+D ++ V L GI TMEDLA +VDDLL
Sbjct: 422 ALVSEEKFEQAEPAEDLLNMEGMDRELAVELASRGIVTMEDLAEQAVDDLLEIE------ 475
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518
G +++ +I+ AR W E E A
Sbjct: 476 -----------GLSEERAAELIMTARAP--WFEGEDEA 500
>gi|300312899|ref|YP_003776991.1| transcription elongation factor protein [Herbaspirillum seropedicae
SmR1]
gi|300075684|gb|ADJ65083.1| transcription elongation factor protein [Herbaspirillum seropedicae
SmR1]
Length = 519
Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats.
Identities = 196/465 (42%), Positives = 306/465 (65%), Gaps = 5/465 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + DA+A EK++D++VV + ++ +A + Y DIRV I+ E+G+ FR
Sbjct: 4 EILLLVDALAREKNVDKEVVFGALEHALAQATKKRYEGEVDIRVSIDRESGEFESFRRWH 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ ++ L A+++ P I++ + DP+ ++FGR Q KQV++Q++R+
Sbjct: 64 VVPDEAGLQLPDQEVLLFEAKEQFPDIEVDEYIEDPIESVEFGRRFAQDTKQVVLQRIRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER++ +F + +++GT+KR+E G+ I++ G + + RD+ I +ENLR GDRV++
Sbjct: 124 AEREQILADFLARGDALVTGTIKRMERGDAIIESGKIEARLPRDQMIPKENLRIGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI V R RGPQV+LSRT P+F++KLF +EVPEI G +++K+ +RDPG RAK+AV+++
Sbjct: 184 YILRVDRSARGPQVILSRTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAVYTA 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVGMRGSRVQAV EL E++DIV+WS D A FVI AL PA VT +V+DE+
Sbjct: 244 DKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V +E L++AIGR GQNVRLA++LT W I+I+T EE + + FM+
Sbjct: 304 KHAMDVVVDEENLAIAIGRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTLFME 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
++VD+ +A +LV EGF+ +EE+A V I+E+ IE FDEET E++ RAR+ L I
Sbjct: 364 KLDVDQEVADILVEEGFSTLEEIAYVPINEMLEIESFDEETVNELRNRARDALVTEAIAS 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDD 469
++ + + + G+D + LG G+KT+ AG + D+
Sbjct: 424 EEGLEGMEEEL--INFEGLDRVLAGKLGLAGVKTLPAFAGLAYDE 466
>gi|308389761|gb|ADO32081.1| N utilization substance protein A [Neisseria meningitidis alpha710]
Length = 500
Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats.
Identities = 210/518 (40%), Positives = 323/518 (62%), Gaps = 30/518 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66
E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR
Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63
Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++
Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTAIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180
R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD
Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 183
Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK
Sbjct: 184 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 243
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++
Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
+V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E +
Sbjct: 304 IVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
+ FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ +
Sbjct: 364 RRLFMDYLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ +
Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELIEIT---- 477
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
G ++ +++I+ AR ++K
Sbjct: 478 -------------GVNEEPAKAVILTARDTG--FTEDK 500
>gi|238650318|ref|YP_002916170.1| transcription elongation factor NusA [Rickettsia peacockii str.
Rustic]
gi|238624416|gb|ACR47122.1| transcription elongation factor NusA [Rickettsia peacockii str.
Rustic]
Length = 503
Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats.
Identities = 244/511 (47%), Positives = 357/511 (69%), Gaps = 17/511 (3%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
M + +E+LQI D+VA EK I +++++S + ++Q A R YG +I+ +IN +TG+I
Sbjct: 1 MSNIGNVEILQIIDSVAREKGISKEILISTVEQAVQAAGRKKYGNEYNIKAQINRKTGEI 60
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
+L R+L++VE+VE+Y QISL+ A ++P IG + + LPP+D RV+ Q+AKQVI Q
Sbjct: 61 NLLRILKIVEDVEDYLTQISLEEALIKNPEAKIGDEIYEYLPPIDHARVSAQTAKQVITQ 120
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
+V EAER++QY +FKD+ GEII+G VKR+EYG++IVDL ++ +I++D+ I EN +P D
Sbjct: 121 RVIEAEREKQYHDFKDRKGEIINGIVKRIEYGDIIVDLSRAEAIIKKDQLIKGENFKPND 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
R+K+Y+ DVR+E +GPQ+ LSR Q +VKLF +EVPEI I+Q+K+V+RDPGS+AK+A
Sbjct: 181 RIKAYVQDVRQETKGPQIFLSRVDNQMLVKLFKLEVPEILESIIQIKSVARDPGSKAKIA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA---LRPAIVT 297
VF+SDSSIDPVG+CVG+RG+RV+AV EL EKIDIV+WS D A F++NA L P +T
Sbjct: 241 VFASDSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNALAPLAPGEIT 300
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
K+++DED ++EV+V +E S+AIGRRGQNVRLASQLTGW IDI+TEE++S R ++F
Sbjct: 301 KILIDEDRHKVEVVVSQENQSIAIGRRGQNVRLASQLTGWNIDIMTEEQESKRRNEEFLT 360
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
T FM+A++V+E+I LL GF VE++A +IS + IEGF+EE AVEI+ RA Y+
Sbjct: 361 STALFMEALDVEEVIGQLLSVTGFNSVEQIASSEISTLTRIEGFEEELAVEIKNRAINYV 420
Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477
+ + + KK+ +LGV +EL I + ++ + E GIKT+EDL SV++
Sbjct: 421 DLKNEKIIKKLEDLGVEQELIDILELSLELILQFAEYGIKTIEDLGEMSVNE-------- 472
Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYK 508
F + + ++ +I AR
Sbjct: 473 ------FKNLAPNSNITDENIKLLIKTARQH 497
>gi|319760247|ref|YP_004124185.1| transcription elongation protein nusA [Candidatus Blochmannia vafer
str. BVAF]
gi|318038961|gb|ADV33511.1| transcription elongation protein nusA [Candidatus Blochmannia vafer
str. BVAF]
Length = 507
Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats.
Identities = 187/520 (35%), Positives = 304/520 (58%), Gaps = 30/520 (5%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EKS+ ++ + + ++ A + Y DIRV I+ ++G I FR
Sbjct: 2 NKEILFVVEAVSNEKSVPKEKIFLALESALITATKKQYQQDIDIRVTIDRKSGKICTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV++V + T +I+L+ AR + I I + D + + F R+ Q+AKQVIIQK+REA
Sbjct: 62 WIVVDQVVHPTKEITLEAARLENSKISINDYIEDIVESVGFDRITTQTAKQVIIQKLREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F ++ G II+G +K++ + VDLGN+ +G+I+R++ + REN R GDR++
Sbjct: 122 ERMIIIEQFLNRQGSIITGVIKKINRNAIHVDLGNNAEGIIKREDMLPRENFRLGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ V+ E +G Q+ +SRT + +++LF +EVPEI ++ VK+ +RDPGSR+K+AV ++
Sbjct: 182 ILCLVKPESKGHQLFISRTCTEMLIELFRIEVPEIGEEVITVKSAARDPGSRSKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+GACVGMRG+RVQAV +EL E+ID+++W + FVINA+ PA V +++DED
Sbjct: 242 DKRIDPIGACVGMRGARVQAVSSELGGERIDVILWDDNPVQFVINAMSPADVVSIIVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V + L+ AIGR GQN+RL SQL+GW ++++T E RQ + F+
Sbjct: 302 KHSMDISVDESNLAQAIGRNGQNIRLVSQLSGWALNVMTTHELEKKRQSELYNTINIFVH 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEG-FDEETAVEIQGRAREYLEGIDI- 422
+N+DE A +L+ GF+ +EELA V I+E+ SI G FD +T ++ +A++ L
Sbjct: 362 VLNIDEKSARVLIDSGFSSLEELAYVPITELLSIGGVFDIKTVELLRSKAKQALTNFTES 421
Query: 423 ---------TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473
+ Q + EL + G+ +I + L E+GI T++DLA + L
Sbjct: 422 GGSIGSMHKSNQDNCDSVNAVSELLKLSGLKYEIALKLVEHGIYTLQDLAEQDILSLSEI 481
Query: 474 SENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
E ++ +I+ AR + W
Sbjct: 482 KE-----------------LTTKEIGDLIMEAR-NICWFN 503
>gi|225075066|ref|ZP_03718265.1| hypothetical protein NEIFLAOT_00065 [Neisseria flavescens
NRL30031/H210]
gi|224953550|gb|EEG34759.1| hypothetical protein NEIFLAOT_00065 [Neisseria flavescens
NRL30031/H210]
Length = 501
Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats.
Identities = 209/519 (40%), Positives = 317/519 (61%), Gaps = 30/519 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66
E+LQ+A+A+A EK+++ +VV + ++ AA+ D+RVEI+ +TG+ FR
Sbjct: 4 EMLQLAEALASEKNVETEVVFKALEFALSTAAKKKADREHMDVRVEIDRDTGEYQTFRRW 63
Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++
Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180
R+AER++ EF +I+SGTVKRVE +IV++ G D +I R+E I REN R GD
Sbjct: 124 RDAEREQNLNEFLASKEDIVSGTVKRVERHGIIVEVVAGKLDALIPREEMIPRENFRSGD 183
Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
R+++ V QV+LSRT F+ KL+ EVPEI +G+++++ V+RDPG RAK
Sbjct: 184 RIRALFLRVDEIGNTGRKQVILSRTSGDFLAKLYANEVPEIADGLLEIREVARDPGQRAK 243
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++D IDP G C+G+RGSRV AV EL E+IDIV+WSP+ A FV+NAL PA V++
Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDIVLWSPEPAQFVMNALSPAEVSR 303
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
+V+DED ++VIV + QL+LAIGR GQNVRLAS LTGW ++I+T EE +
Sbjct: 304 IVIDEDKHAVDVIVDENQLALAIGRGGQNVRLASILTGWQLNIMTVEEADERNAAEDAVI 363
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
F +N+D+ A +LV EGFA +EE+A V +E+ SI+GFDEE ++ RAR+ +
Sbjct: 364 RNLFTTHLNIDDETADILVEEGFATLEEVAYVPAAELLSIDGFDEEIVETLRNRARDAIL 423
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
I I ++K+ E VSE++ ++ G+DS + L E G+ +DLA SVD+L+ +
Sbjct: 424 TITIAAEEKLGE--VSEDMRNLDGVDSDMLRKLAEAGVTQRDDLAELSVDELVEIT---- 477
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517
G +++ + +I+ AR W +E
Sbjct: 478 -------------GVDEEEAKKVILAAREH--WFTEENN 501
>gi|241760381|ref|ZP_04758476.1| transcription elongation factor NusA [Neisseria flavescens SK114]
gi|241319259|gb|EER55737.1| transcription elongation factor NusA [Neisseria flavescens SK114]
Length = 501
Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats.
Identities = 209/519 (40%), Positives = 317/519 (61%), Gaps = 30/519 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66
E+LQ+A+A+A EK+++ +VV + ++ AA+ D+RVEI+ +TG+ FR
Sbjct: 4 EMLQLAEALASEKNVETEVVFKALEFALSTAAKKKADREHMDVRVEIDRDTGEYQTFRRW 63
Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++
Sbjct: 64 LIVADEDYTYPEVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180
R+AER++ EF +I+SGTVKRVE +IV++ G D +I R+E I REN R GD
Sbjct: 124 RDAEREQNLNEFLASKEDIVSGTVKRVERHGIIVEVVAGKLDALIPREEMIPRENFRSGD 183
Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
R+++ V QV+LSRT F+ KL+ EVPEI +G+++++ V+RDPG RAK
Sbjct: 184 RIRALFLRVDEIGNTGRKQVILSRTSGDFLAKLYANEVPEIADGLLEIREVARDPGQRAK 243
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++D IDP G C+G+RGSRV AV EL E+IDIV+WSP+ A FV+NAL PA V++
Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDIVLWSPEPAQFVMNALSPAEVSR 303
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
+V+DED ++VIV + QL+LAIGR GQNVRLAS LTGW ++I+T EE +
Sbjct: 304 IVIDEDKHAVDVIVDENQLALAIGRGGQNVRLASILTGWQLNIMTVEEADERNAAEDAVI 363
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
F +N+D+ A +LV EGFA +EE+A V +E+ SI+GFDEE ++ RAR+ +
Sbjct: 364 RNLFTTHLNIDDETADILVEEGFATLEEVAYVPAAELLSIDGFDEEIVETLRNRARDAIL 423
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
I I ++K+ E VSE++ ++ G+DS + L E G+ +DLA SVD+L+ +
Sbjct: 424 TITIAAEEKLGE--VSEDMRNLDGVDSDMLRKLAEAGVTQRDDLAELSVDELVEIT---- 477
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517
G +++ + +I+ AR W +E
Sbjct: 478 -------------GVDEEEAKKVILAAREH--WFTEENN 501
>gi|157828686|ref|YP_001494928.1| transcription elongation factor NusA [Rickettsia rickettsii str.
'Sheila Smith']
gi|165933405|ref|YP_001650194.1| transcription elongation factor NusA [Rickettsia rickettsii str.
Iowa]
gi|157801167|gb|ABV76420.1| transcription elongation factor NusA [Rickettsia rickettsii str.
'Sheila Smith']
gi|165908492|gb|ABY72788.1| N utilization substance protein A [Rickettsia rickettsii str. Iowa]
Length = 503
Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats.
Identities = 244/511 (47%), Positives = 357/511 (69%), Gaps = 17/511 (3%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
M + +E+LQI D+VA EK I +++++S + ++Q A R YG +I+ +IN +TG+I
Sbjct: 1 MSNVGNVEILQIIDSVAREKGISKEILISTVEQAVQAAGRKKYGNEYNIKAQINRKTGEI 60
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
+L R+L++VE+VE+Y QISL+ A ++P IG + + LPP+D RV+ Q+AKQVI Q
Sbjct: 61 NLLRILKIVEDVEDYLTQISLEEALIKNPEAKIGDEIYEYLPPIDHARVSAQAAKQVITQ 120
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
+V EAER++QY +FKD+ GEII+G VKR+EYG++IVDL ++ +I++D+ I EN +P D
Sbjct: 121 RVIEAEREKQYHDFKDRKGEIINGIVKRIEYGDIIVDLSRAEAIIKKDQLIKGENFKPND 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
R+K+Y+ DVR+E +GPQ+ LSR Q +VKLF +EVPEI I+Q+K+V+RDPGS+AK+A
Sbjct: 181 RIKAYVQDVRQETKGPQIFLSRVDNQMLVKLFKLEVPEILESIIQIKSVARDPGSKAKIA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA---LRPAIVT 297
VF+SDSSIDPVG+CVG+RG+RV+AV EL EKIDIV+WS D A F++NA L P +T
Sbjct: 241 VFASDSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNALAPLAPGEIT 300
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
K+++DED ++EV+V +E S+AIGRRGQNVRLASQLTGW IDI+TEE++S R ++F
Sbjct: 301 KILIDEDRHKVEVVVSQENQSIAIGRRGQNVRLASQLTGWNIDIMTEEQESKRRNEEFLT 360
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
T FM+A++V+E+I LL GF VE++A +IS + IEGF+EE AVEI+ RA Y+
Sbjct: 361 STALFMEALDVEEVIGQLLSVTGFNSVEQIASSEISTLTRIEGFEEELAVEIKNRAINYV 420
Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477
+ + + KK+ +LGV +EL I + ++ + E GIKT+EDL SV++
Sbjct: 421 DLKNEKIIKKLEDLGVEQELIDILELSLELILQFAEYGIKTIEDLGEMSVNE-------- 472
Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYK 508
F + + ++ +I AR
Sbjct: 473 ------FKNLAPNSNITDENIKLLIKTARQH 497
>gi|94501385|ref|ZP_01307905.1| N utilization substance protein A [Oceanobacter sp. RED65]
gi|94426498|gb|EAT11486.1| N utilization substance protein A [Oceanobacter sp. RED65]
Length = 497
Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats.
Identities = 204/513 (39%), Positives = 326/513 (63%), Gaps = 23/513 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66
E+L +A+AV+ EK ++++V+ + ++ AA+ Y DIRV I+ +G+ +R
Sbjct: 4 EILLVAEAVSNEKGVEKEVIFEAIELALAAAAKKRYEDEEPDIRVAIDRRSGEYETYRHW 63
Query: 67 EVVEEVENYT--CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
+V +++++ A D D ++ G + + +FGR+A Q+AKQ+I+QKVRE
Sbjct: 64 TIVSNEVVPALGSELNMQEAADIDTNLKEGDSYEEQIENPEFGRIAAQAAKQIIMQKVRE 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVK 183
AER + ++D++GE++ GTVK+V N+IVDLGN+ +G++ R++ ++RE R GDR++
Sbjct: 124 AERAKITAAYEDRIGELVHGTVKKVTRDNIIVDLGNNAEGLLPREQLVAREVFRIGDRLR 183
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+ + V E RGPQ++LSR +++LF +EVPEI ++++KA +RDPGSRAK+AV S
Sbjct: 184 AVLTSVNPENRGPQLILSRAAGSMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKS 243
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
+D IDPVGACVGMRG+RVQAV EL +E++DIV+W + A VINAL PA V +V+DE
Sbjct: 244 NDQRIDPVGACVGMRGARVQAVSNELGNERVDIVLWDDNPAQLVINALAPAEVESIVMDE 303
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
+ ++V V ++QL++AIGR GQNV+LAS+LTGW I+++TEEE +Q++ Q M
Sbjct: 304 ETNSMDVAVAEDQLAIAIGRGGQNVKLASELTGWVINVMTEEEAGEKQQQEQGSLVQKLM 363
Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423
A+++DE +A +LV EGF ++E+A V E+ I+GFDEE E+Q RA++ L I
Sbjct: 364 DALDIDEDMAAVLVGEGFTGLDEVAYVPREEMLEIDGFDEEVVDELQARAKDVLLTQAIA 423
Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483
++K+ + +E+L ++ G+D + + L +GI TMEDLA VDD+
Sbjct: 424 SEEKLEDAQPAEDLLNMEGMDQHLALVLASHGIVTMEDLAEQGVDDISSLE--------- 474
Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
G +++ +I+ AR W E+ +
Sbjct: 475 --------GLDEEKAAQLIMTARKP--WFEESE 497
>gi|51473734|ref|YP_067491.1| transcription elongation factor NusA [Rickettsia typhi str.
Wilmington]
gi|51460046|gb|AAU04009.1| transcription elongation protein NusA (N utilization substance
protein A) [Rickettsia typhi str. Wilmington]
Length = 503
Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats.
Identities = 243/511 (47%), Positives = 363/511 (71%), Gaps = 17/511 (3%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
M + +E+LQI D+VA EK I ++++++ + +IQ A R YG +I+ +IN +TG+I
Sbjct: 1 MSNIYNVEILQIIDSVAREKGISKEILIATVEQAIQVAGRKKYGNEYNIKAQINRKTGEI 60
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
+L R+L++VE+VE+Y QISL+ A ++P IG + + LPP+D+ RV+ Q+AKQVI Q
Sbjct: 61 NLLRILKIVEDVEDYLTQISLEDALVKNPEAKIGDEIYEYLPPIDYARVSAQAAKQVITQ 120
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
+V EAER++QY +FKD+ G+II+G VKR+EYG++IVDLG ++ +I++D+ I E+ +P D
Sbjct: 121 RVIEAEREKQYNDFKDRKGDIINGIVKRIEYGDIIVDLGRAEAIIKKDQLIKGEHFKPND 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
R+K+Y+ DVR+E +GPQ+ LSR + +VKLF +EVPEI I+QVK+V+RDPGS+AK+A
Sbjct: 181 RIKAYVQDVRQETKGPQIFLSRVDNKMLVKLFKLEVPEILEDIIQVKSVARDPGSKAKIA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA---LRPAIVT 297
VF+SDSSIDPVG+CVG+RG+RV+AV EL EKIDIV+WS D A F++N+ L P+ +T
Sbjct: 241 VFASDSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNSLVPLAPSEIT 300
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
K+++DED ++EV+V +E S+AIGRRGQNVRLAS+LTGW IDI+TEE++S R ++F+
Sbjct: 301 KILIDEDSHKVEVVVSQENQSIAIGRRGQNVRLASKLTGWNIDIMTEEQESKRRNEEFST 360
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
T+ FM+A++V+E+I LL GF VE++A +IS + IEGF+EE AVEI+ RA Y+
Sbjct: 361 STELFMEALDVEEVIGQLLSVTGFNSVEQIASSEISTLTRIEGFEEELAVEIKNRAIRYV 420
Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477
+ + + KK+ ELGV +EL I + ++ + E GIKT+EDL SV++
Sbjct: 421 DLKNEQIIKKLEELGVEQELIDILELPLELILKFAEYGIKTIEDLGEMSVNE-------- 472
Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYK 508
F + D ++ +I AR+
Sbjct: 473 ------FKNLAPNSNITDDNIKLLIKTARHH 497
>gi|229586874|ref|YP_002845375.1| transcription elongation factor NusA [Rickettsia africae ESF-5]
gi|228021924|gb|ACP53632.1| N utilization substance protein A, transcription termination factor
NusA [Rickettsia africae ESF-5]
Length = 503
Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats.
Identities = 244/511 (47%), Positives = 357/511 (69%), Gaps = 17/511 (3%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
M + +E+LQI D+VA EK I +++++S + ++Q A R YG +I+ +IN +TG+I
Sbjct: 1 MSNIGNVEILQIIDSVAREKGISKEILISTVEQAVQAAGRKKYGNEYNIKAQINRKTGEI 60
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
+L R+L++VE+VE+Y QISL+ A ++P IG + + LPP+D RV+ Q+AKQVI Q
Sbjct: 61 NLLRILKIVEDVEDYLTQISLEEALIKNPEAKIGDEIYEYLPPIDHARVSAQAAKQVITQ 120
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
+V EAER++QY +FKD+ GEII+G VKR+EYG++IVDL ++ +I++D+ I EN +P D
Sbjct: 121 RVIEAEREKQYHDFKDRKGEIINGIVKRIEYGDIIVDLSRAEAIIKKDQLIKGENFKPND 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
R+K+Y+ DVR+E +GPQ+ LSR Q +VKLF +EVPEI I+Q+K+V+RDPGS+AK+A
Sbjct: 181 RIKAYVQDVRQETKGPQIFLSRVDNQMLVKLFKLEVPEILESIIQIKSVARDPGSKAKIA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA---LRPAIVT 297
VF+SDSSIDPVG+CVG+RG+RV+AV EL EKIDIV+WS D A F++NA L P +T
Sbjct: 241 VFASDSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNALAPLAPGEIT 300
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
K+++DED ++EV+V +E S+AIGRRGQNVRLASQLTGW IDI+TEE++S R ++F
Sbjct: 301 KILIDEDRHKVEVVVSQENQSIAIGRRGQNVRLASQLTGWNIDIMTEEQESKRRNEEFLT 360
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
T FM+A++V+E+I LL GF VE++A +IS + IEGF+EE AVEI+ RA Y+
Sbjct: 361 STALFMEALDVEEVIGQLLSVTGFNSVEQIASSEISTLTRIEGFEEELAVEIKNRAINYV 420
Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477
+ + + KK+ +LGV +EL I + ++ + E GIKT+EDL SV++
Sbjct: 421 DLKNEKIIKKLEDLGVEQELIDILELSLELILQFAEYGIKTIEDLGEMSVNE-------- 472
Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYK 508
F + + ++ +I AR
Sbjct: 473 ------FKNLAPNSNITDENIKLLIKTARQH 497
>gi|213580130|ref|ZP_03361956.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
Length = 464
Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats.
Identities = 191/481 (39%), Positives = 295/481 (61%), Gaps = 24/481 (4%)
Query: 41 SLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDP 100
D+RVEI+ ++GD FR +VEEV T +I+L+ AR D S+++G V D
Sbjct: 1 KNNEQEIDVRVEIDRKSGDFDTFRRWLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQ 60
Query: 101 LPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-- 158
+ + F R+ Q+AKQVI+QKVREAER +F+D+ GEI++G VK+V N+ +++
Sbjct: 61 IESVTFDRITTQTAKQVIVQKVREAERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKS 120
Query: 159 ----GNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHM 214
GN++ VI R++ + REN RPGDR++ +Y VR E RG Q+ ++R+ P+ +++LF +
Sbjct: 121 EGMAGNAEAVILREDMLPRENFRPGDRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRI 180
Query: 215 EVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKI 274
EVPEI ++++KA +RDPGSRAK+AV ++D IDPVGACVGMRG+RVQAV TEL E+I
Sbjct: 181 EVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERI 240
Query: 275 DIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQL 334
DIV+W + A FVINA+ PA V +V+DED +++ V L+ AIGR GQNV LASQL
Sbjct: 241 DIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVHLASQL 300
Query: 335 TGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISE 394
+GW ++++T ++ Q + + + F + +++DE A +LV EGF+ +EELA V + E
Sbjct: 301 SGWELNVMTVDDLQAKHQAEAHAAIEIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKE 360
Query: 395 IASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGEN 454
+ I+G DE T ++ RA+ L + + + + +++L ++ G+D + L
Sbjct: 361 LLEIDGLDEPTVEALRERAKNALATLAQDQEASLGDNKPADDLLNLEGLDRDMAFKLAAR 420
Query: 455 GIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
G+ T+EDLA +DDL G ++ +I+ AR + W
Sbjct: 421 GVCTLEDLADQGIDDLADIE-----------------GLTDEKAGELIMAAR-NICWFGD 462
Query: 515 E 515
E
Sbjct: 463 E 463
>gi|319637701|ref|ZP_07992467.1| N utilization substance protein A [Neisseria mucosa C102]
gi|317400856|gb|EFV81511.1| N utilization substance protein A [Neisseria mucosa C102]
Length = 497
Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats.
Identities = 207/518 (39%), Positives = 316/518 (61%), Gaps = 30/518 (5%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLLE 67
+LQ+A+A+A EK+++ +VV + ++ AA+ D+RVEI+ +TG+ FR
Sbjct: 1 MLQLAEALASEKNVETEVVFKALEFALSTAAKKKADREHMDVRVEIDRDTGEYQTFRRWL 60
Query: 68 VV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++R
Sbjct: 61 IVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRIR 120
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGDR 181
+AER++ EF +I+SGTVKRVE +IV++ G D +I R+E I REN R GDR
Sbjct: 121 DAEREQNLNEFLASKEDIVSGTVKRVERHGIIVEVVAGKLDALIPREEMIPRENFRSGDR 180
Query: 182 VKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
+++ V QV+LSRT F+ KL+ EVPEI +G+++++ V+RDPG RAK+
Sbjct: 181 IRALFLRVDEIGNTGRKQVILSRTSGDFLAKLYANEVPEIADGLLEIREVARDPGQRAKV 240
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV ++D IDP G C+G+RGSRV AV EL E+IDIV+WSP+ A FV+NAL PA V+++
Sbjct: 241 AVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDIVLWSPEPAQFVMNALSPAEVSRI 300
Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
V+DED ++VIV + QL+LAIGR GQNVRLAS LTGW ++I+T EE +
Sbjct: 301 VIDEDKHAVDVIVDENQLALAIGRGGQNVRLASILTGWQLNIMTVEEADERNAAEDAVIR 360
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
F +N+D+ A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ +
Sbjct: 361 NLFTTHLNIDDETADILVEEGFATLEEVAYVPAAELLAIEGFDEEIVETLRNRARDAILT 420
Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479
+ I ++K+ E VSE++ ++ G+DS + L E G+ +DLA SVD+L+ +
Sbjct: 421 MTIAAEEKLGE--VSEDMRNLDGVDSDMLRKLAEAGVTQRDDLAELSVDELVEIT----- 473
Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517
G +++ + +I+ AR W +E
Sbjct: 474 ------------GVDEEEAKKVILAAREH--WFTEENN 497
>gi|34581537|ref|ZP_00143017.1| N utilization substance protein A [Rickettsia sibirica 246]
gi|28262922|gb|EAA26426.1| N utilization substance protein A [Rickettsia sibirica 246]
Length = 503
Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats.
Identities = 243/511 (47%), Positives = 357/511 (69%), Gaps = 17/511 (3%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
M + +E+LQI D+VA EK I +++++S + ++Q A R YG +I+ +IN +TG+I
Sbjct: 1 MSNIGNVEILQIIDSVAREKGISKEILISTVEQAVQAAGRKKYGNEYNIKAQINRKTGEI 60
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
+L R+L++VE+VE+Y QISL+ A ++P IG + + LPP+D RV+ Q+AKQVI Q
Sbjct: 61 NLLRILKIVEDVEDYLTQISLEEALIKNPEAKIGDEIYEYLPPIDHARVSAQAAKQVITQ 120
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
+V EAER++QY +FKD+ GEII+G VKR+EYG++IVDL ++ +I++D+ I EN +P D
Sbjct: 121 RVIEAEREKQYHDFKDRKGEIINGIVKRIEYGDIIVDLSRAEAIIKKDQLIKGENFKPND 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
R+K+Y+ DVR+E +GPQ+ LSR Q ++KLF +EVPEI I+Q+K+V+RDPGS+AK+A
Sbjct: 181 RIKAYVQDVRQETKGPQIFLSRVDNQMLIKLFKLEVPEILESIIQIKSVARDPGSKAKIA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA---LRPAIVT 297
VF+SDSSIDPVG+CVG+RG+RV+AV EL EKIDIV+WS D A F++NA L P +T
Sbjct: 241 VFASDSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNALAPLAPGEIT 300
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
K+++DED ++EV+V +E S+AIGRRGQNVRLASQLTGW IDI+TEE++S R ++F
Sbjct: 301 KILIDEDRHKVEVVVSQENQSIAIGRRGQNVRLASQLTGWNIDIMTEEQESKRRNEEFLT 360
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
T FM+A++V+E+I LL GF VE++A +IS + IEGF+EE AVEI+ RA Y+
Sbjct: 361 STALFMEALDVEEVIGQLLSVTGFNSVEQIASSEISTLTRIEGFEEELAVEIKNRAINYV 420
Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477
+ + + KK+ +LGV +EL I + ++ + E GIKT+EDL SV++
Sbjct: 421 DLKNEKIIKKLEDLGVEQELIDILELSLELILQFAEYGIKTIEDLGEMSVNE-------- 472
Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYK 508
F + + ++ +I AR
Sbjct: 473 ------FKNLAPNSNITDENIKLLIKTARQH 497
>gi|294085149|ref|YP_003551909.1| NusA antitermination factor [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292664724|gb|ADE39825.1| NusA antitermination factor [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 531
Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats.
Identities = 260/511 (50%), Positives = 353/511 (69%), Gaps = 17/511 (3%)
Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62
S +EL+Q+AD VA EKSIDR+ V+ M ++IQKA R+ YG DIR I+ ++G I L
Sbjct: 5 SIPGMELIQVADVVAREKSIDREEVMLAMEEAIQKAGRAKYGLERDIRAMIDRKSGAIRL 64
Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
R +EVVEEVE+ QIS+ P++ +G LPP++FGR+A Q+AKQVI QKV
Sbjct: 65 ERWMEVVEEVEDDETQISVDEGAKLTPAVGLGEFSKQSLPPIEFGRIAAQTAKQVISQKV 124
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182
R+AER RQ+ E+KD+VGEI+ GT+KR E ++ VDLG ++ VIRR+E I RENLR GDRV
Sbjct: 125 RDAERARQFEEYKDRVGEIVVGTIKRAESYSITVDLGRAEAVIRREEMIPRENLRQGDRV 184
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
++YI DVR EQRGPQ+ LSR +FM KLF EVPEIY+GI+++K V+R+ GSRAK++V
Sbjct: 185 RAYIIDVREEQRGPQIFLSRACNEFMAKLFTQEVPEIYDGIIEIKGVAREAGSRAKISVL 244
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
S+D IDPVGACVGMRGSRVQAVV EL+ EK++I+ ++ D A FV+NAL PA V KVV+D
Sbjct: 245 SNDPGIDPVGACVGMRGSRVQAVVGELQGEKVEIIPFNDDPAAFVVNALAPAEVAKVVMD 304
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
E GR+EV+VP +QLSLAIGRRGQNVRLASQL+GW IDI+TE E+S RQ++F R+ F
Sbjct: 305 EVAGRMEVVVPDDQLSLAIGRRGQNVRLASQLSGWYIDILTEAEESERRQEEFRTRSTGF 364
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
++A+N+D++IAHLLVAEGF EE+A I E+A+I+GFDE+ A E+Q RA +Y+E
Sbjct: 365 IEALNIDDVIAHLLVAEGFVLPEEIAESTIEELANIQGFDEDIATELQNRAVDYVERETT 424
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482
+ + + +L V+++L + I + ++L EN I L + + E
Sbjct: 425 RINEALDKLKVADDLRAFEYISLAMLLSLAENNI--------------LTLDDLADLDNE 470
Query: 483 KFDGFLSSLGTPKD-QVESMIIHARYKMGWI 512
+ L G D + +I+ AR W
Sbjct: 471 ELVSLLGEHGLSDDAEAGDIIMAARAH--WF 499
>gi|319787428|ref|YP_004146903.1| NusA antitermination factor [Pseudoxanthomonas suwonensis 11-1]
gi|317465940|gb|ADV27672.1| NusA antitermination factor [Pseudoxanthomonas suwonensis 11-1]
Length = 503
Score = 425 bits (1094), Expect = e-117, Method: Composition-based stats.
Identities = 202/479 (42%), Positives = 319/479 (66%), Gaps = 5/479 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66
ELL + DAVA EK + R+V+ + ++ AA+ Y RV I+ + G FR
Sbjct: 4 ELLLVVDAVANEKGVPREVIFEALEAALASAAKKRYVDQDVVTRVAIDRKDGSYETFRRW 63
Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
EVV + +E+ QI L A D +++G + + + +FGR+A Q+AKQVI+Q+VR
Sbjct: 64 EVVADDVVMESPDRQIRLMDAVDEADGVEVGDYIEEQIENPEFGRIAAQAAKQVIVQRVR 123
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182
EAER + +KD+VGE+++G VKRVE GN+ VDLG + + I +D+ I R+ LR GDRV
Sbjct: 124 EAERQQVVDAWKDRVGELVTGVVKRVERGNIYVDLGGNAEAFIPKDKGIPRDVLRAGDRV 183
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
+ Y+Y+VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+AV
Sbjct: 184 RGYLYEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIAVI 243
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
+ D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++D
Sbjct: 244 AHDNRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSIIVD 303
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
E+ +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T+++ + + + Q F
Sbjct: 304 EEKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTQDQVAAKSEAEQAVARQLF 363
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
M + VDE IA +LV+EGF+ VEE+A V + E+ ++EGFDE+ E++ RAR+ L +
Sbjct: 364 MDKLEVDEEIAGILVSEGFSTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNDAL 423
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+++++ E G +E+L ++ G+D AL +G++T EDL+ + D+++ +
Sbjct: 424 AVEEQMGEEGPAEDLLALEGMDEDTAFALAAHGVRTSEDLSDLAADEVVEFGIEGLDET 482
>gi|15892740|ref|NP_360454.1| transcription elongation factor NusA [Rickettsia conorii str.
Malish 7]
gi|20139038|sp|Q92HF4|NUSA_RICCN RecName: Full=Transcription elongation protein nusA
gi|15619917|gb|AAL03355.1| N utilization substance protein A [Rickettsia conorii str. Malish
7]
Length = 503
Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats.
Identities = 244/511 (47%), Positives = 357/511 (69%), Gaps = 17/511 (3%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
M + +E+LQI D+VA EK I +++++S + ++Q A R YG DI+ +IN +TG+I
Sbjct: 1 MSNIGNVEILQIIDSVAREKGISKEILISTVEQAVQAAGRKKYGNEYDIKAQINRKTGEI 60
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
+L R+L++VE+VE+Y QISL+ A ++P IG + + LPP+D RV+ Q+AKQVI Q
Sbjct: 61 NLLRILKIVEDVEDYLTQISLEEALIKNPEAKIGDEIYEYLPPIDHARVSAQAAKQVITQ 120
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
+V EAER++QY +FKD+ GEII+G VKR+EYG++IVDL ++ +I++D+ I EN +P D
Sbjct: 121 RVIEAEREKQYHDFKDRKGEIINGIVKRIEYGDIIVDLSRAEAIIKKDQLIKGENFKPND 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
R+K+Y+ DVR+E +GPQ+ LSR Q +VKLF +EVPEI I+Q+K+V+RDPGS+AK+A
Sbjct: 181 RIKAYVQDVRQETKGPQIFLSRVDNQMLVKLFKLEVPEILESIIQIKSVARDPGSKAKIA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA---LRPAIVT 297
VF++DSSIDPVG+CVG+RG+RV+AV EL EKIDIV+WS D A F++NA L P +T
Sbjct: 241 VFAADSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNALAPLAPGEIT 300
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
K+++DED ++EV+V +E S+AIGRRGQNVRLASQLTGW IDI+TEE++S R ++F
Sbjct: 301 KILIDEDRHKVEVVVSQENQSIAIGRRGQNVRLASQLTGWNIDIMTEEQESKRRNEEFLT 360
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
T FM+A++V+E+I LL GF VE++A +IS + IEGF+EE AVEI+ RA Y+
Sbjct: 361 STALFMEALDVEEVIGQLLSVTGFNSVEQIASSEISTLTRIEGFEEELAVEIKNRAINYV 420
Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477
+ + + KK+ +LGV +EL I + ++ + E GIKT+EDL SV++
Sbjct: 421 DLKNEKIIKKLEDLGVEQELIDILELSLELILQFAEYGIKTIEDLGEMSVNE-------- 472
Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYK 508
F + + ++ +I AR
Sbjct: 473 ------FKNLAPNSNITDENIKLLIKTARQH 497
>gi|67459264|ref|YP_246888.1| transcription elongation factor NusA [Rickettsia felis URRWXCal2]
gi|67004797|gb|AAY61723.1| N utilization substance protein A, transcription termination factor
NusA [Rickettsia felis URRWXCal2]
Length = 503
Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats.
Identities = 241/511 (47%), Positives = 357/511 (69%), Gaps = 17/511 (3%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
M + +E+LQI D+VA EK I +++++S + ++Q A R YG +I+ +IN +TG+I
Sbjct: 1 MSNIGNVEILQIIDSVAREKGISKEILISTVEQAVQVAGRKKYGNEYNIKAQINRKTGEI 60
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
+L R+L++VE+VE+Y QISL+ A ++P IG + + LPP+D RV+ Q+AKQVI Q
Sbjct: 61 NLLRILKIVEDVEDYLTQISLEEALIKNPEAKIGDEIYEYLPPIDHARVSAQAAKQVITQ 120
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
+V EAER++QY +FKD+ GEII+G VKR+EYG++IVDL ++ +I++D+ I EN +P D
Sbjct: 121 RVIEAEREKQYHDFKDRKGEIINGIVKRIEYGDIIVDLSRAEAIIKKDQLIKGENFKPND 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
R+K Y+ DVR+E +GPQ+ LSR Q +VKLF +EVPEI I+Q+K+V+RDPGS+AK+A
Sbjct: 181 RIKVYVQDVRQETKGPQIFLSRVDNQMLVKLFKLEVPEILEDIIQIKSVARDPGSKAKIA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA---LRPAIVT 297
VF+SDSSIDPVG+CVG+RG+RV+A+ EL EKIDIV+WS D A F++NA L P +T
Sbjct: 241 VFASDSSIDPVGSCVGIRGNRVKAITNELNGEKIDIVLWSNDLAQFIVNALAPLAPGEIT 300
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
K+++DED ++EV+V +E S+AIGRRGQNVRLAS+LTGW IDI+TEE++S R ++F
Sbjct: 301 KILIDEDRHKVEVVVSQENQSIAIGRRGQNVRLASKLTGWNIDIMTEEQESKRRNEEFLT 360
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
T+ FM+A++V+E+I LL GF VE++A ++S + IEGF+EE AVEI+ RA Y+
Sbjct: 361 STELFMEALDVEEVIGQLLSVTGFNSVEQIATSEVSALTRIEGFEEELAVEIKNRAINYV 420
Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477
+ + + KK+ +LGV +EL I + ++ + E GIKT+EDL SV++
Sbjct: 421 DLKNEKIIKKLEDLGVEQELIDILELPLELILKFAEYGIKTIEDLGEMSVNE-------- 472
Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYK 508
F + + ++ +I AR
Sbjct: 473 ------FKNLAPNSNITDENIKLLIKTARQH 497
>gi|261379745|ref|ZP_05984318.1| L factor [Neisseria subflava NJ9703]
gi|284797423|gb|EFC52770.1| L factor [Neisseria subflava NJ9703]
Length = 501
Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats.
Identities = 208/519 (40%), Positives = 318/519 (61%), Gaps = 30/519 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66
E+LQ+A+A+A EK+++ +VV + ++ AA+ D+RVEI+ +TG+ FR
Sbjct: 4 EMLQLAEALASEKNVETEVVFKALEFALSTAAKKKADREHMDVRVEIDRDTGEYQTFRRW 63
Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++
Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180
R+AER++ EF +I+SGTVKRVE +IV++ G D +I R+E I REN R GD
Sbjct: 124 RDAEREQNLNEFLASKEDIVSGTVKRVERHGIIVEVVAGKLDALIPREEMIPRENFRSGD 183
Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
R+++ V QV+LSRT F+ KL+ EVPEI +G+++++ V+RDPG RAK
Sbjct: 184 RIRALFLRVDEIGNTGRKQVILSRTSGDFLAKLYANEVPEIADGLLEIREVARDPGQRAK 243
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++D IDP G C+G+RGSRV AV EL E+IDIV+WSP++A FV+NAL PA V++
Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDIVLWSPETAQFVMNALSPAEVSR 303
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
+V+DED ++VIV + QL+LAIGR GQNVRLAS LTGW ++I+T EE +
Sbjct: 304 IVIDEDKHAVDVIVDENQLALAIGRGGQNVRLASILTGWQLNIMTVEEADERNAAEDAVI 363
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
F +N+D+ A +LV EGFA +EE+A V +E+ +I+GFDEE ++ RAR+ +
Sbjct: 364 RNLFTTHLNIDDETADILVEEGFATLEEVAYVPAAELLAIDGFDEEIVETLRNRARDAIL 423
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
I I ++K+ E VSE++ ++ G+DS + L E G+ +DLA SVD+L+ +
Sbjct: 424 TITIAAEEKLGE--VSEDMRNLDGVDSDMLRKLAEAGVTQRDDLAELSVDELVEIT---- 477
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517
G +++ + +I+ AR W +E
Sbjct: 478 -------------GVDEEEAKKVILAAREH--WFTEENN 501
>gi|330981089|gb|EGH79192.1| transcription elongation factor NusA [Pseudomonas syringae pv.
aptata str. DSM 50252]
Length = 453
Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats.
Identities = 191/448 (42%), Positives = 304/448 (67%), Gaps = 3/448 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR
Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRRWT 63
Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVREA
Sbjct: 64 VVEDEDLDDPAYELAVDQAQAKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER + +++++GEIISGTVK+V NVIVDLGN+ + ++ R++ ISRE R G RV++
Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S
Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED
Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F++
Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFIE 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+ VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I
Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAIAT 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALG 452
++K+ + +E+L S+ G+D + + L
Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELA 451
>gi|15604408|ref|NP_220925.1| transcription elongation factor NusA [Rickettsia prowazekii str.
Madrid E]
gi|20139314|sp|Q9ZCZ7|NUSA_RICPR RecName: Full=Transcription elongation protein nusA
gi|3861102|emb|CAA15002.1| N UTILIZATION SUBSTANCE PROTEIN A (nusA) [Rickettsia prowazekii]
gi|292572170|gb|ADE30085.1| N utilization substanceprotein A,transcription termination factor
NusA [Rickettsia prowazekii Rp22]
Length = 503
Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats.
Identities = 241/511 (47%), Positives = 361/511 (70%), Gaps = 17/511 (3%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
M + +E+LQI D+VA EK I +++++S + ++Q A R YG +I+ +IN +TG+I
Sbjct: 1 MSNIYNIEILQIIDSVAREKGISKEILISTVEQAVQVAGRKKYGNEYNIKAQINRKTGEI 60
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
+L R+L++VE+VE+Y QISL+ A ++P IG + + LPP+D RV+ Q+AKQVI Q
Sbjct: 61 NLLRILKIVEDVEDYLTQISLEDALVKNPEAKIGDEIYEYLPPIDHARVSAQAAKQVITQ 120
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
+V EAER++QY +FKD+ G+II+G VKR+EYG++IVDL ++ +I++D+ I E+ +P D
Sbjct: 121 RVIEAEREKQYHDFKDRKGDIINGIVKRIEYGDIIVDLSRAEAIIKKDQLIKGEHFKPND 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
R+K+Y+ DVR+E +GPQ+ LSR Q +VKLF +EVPEI I+Q+K+V+RDPGS+AK+A
Sbjct: 181 RIKAYVQDVRQETKGPQIFLSRVDNQMLVKLFKLEVPEILEDIIQIKSVARDPGSKAKIA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA---LRPAIVT 297
VF+SDSSIDPVG+CVG+RG+RV+AV EL EKIDIV+WS D A F++N+ L P+ +T
Sbjct: 241 VFASDSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNSLIPLAPSEIT 300
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
K+++DED ++EV+V +E S+AIGRRGQNVRLAS+LTGW IDI+TEE++S R ++F+
Sbjct: 301 KILIDEDSHKVEVVVSQEHQSIAIGRRGQNVRLASKLTGWNIDIMTEEQESKRRNEEFST 360
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
T+ FM+A++V+E+I LL GF VE++A +IS + IEGF+EE AVEI+ RA Y+
Sbjct: 361 STELFMEALDVEEVIGQLLSVTGFNSVEQIASSEISTLTRIEGFEEELAVEIKNRAIHYV 420
Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477
+ + + KK+ ELGV +EL I + ++ + E GIKT+EDL SV++
Sbjct: 421 DLKNEKIIKKLEELGVEQELIDILELPLELILKFAEYGIKTIEDLGEMSVNE-------- 472
Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYK 508
F + + ++ +I AR+
Sbjct: 473 ------FKNLAPNSNITDENIKLLIKTARHH 497
>gi|157964683|ref|YP_001499507.1| transcription elongation factor NusA [Rickettsia massiliae MTU5]
gi|157844459|gb|ABV84960.1| N utilization substance protein A, transcription termination factor
NusA [Rickettsia massiliae MTU5]
Length = 503
Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats.
Identities = 243/511 (47%), Positives = 358/511 (70%), Gaps = 17/511 (3%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
M + +E+LQI D+VA EK I +++++S + ++Q A R YG +I+ +IN +TG+I
Sbjct: 1 MSNIGNVEILQIIDSVAREKGISKEILISTVEQAVQAAGRKKYGNEYNIKAQINRKTGEI 60
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
+L R+L++VE+VE+Y QISL+ A ++P IG + + LPP+D RV+ Q+AKQVI Q
Sbjct: 61 NLLRILKIVEDVEDYLTQISLEEALIKNPEAKIGDEIYEYLPPIDHARVSAQAAKQVITQ 120
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
+V EAER++QY +FKD+ GEII+G VKR+EYG++IVDL ++ +I++D+ I EN +P D
Sbjct: 121 RVIEAEREKQYHDFKDRKGEIINGIVKRIEYGDIIVDLSRAEAIIKKDQLIKGENFKPND 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
R+K+Y+ DVR+E +GPQ+ LSR Q +VKLF +EVPEI I+Q+K+V+RDPGS+AK+A
Sbjct: 181 RIKAYVQDVRQETKGPQIFLSRVDNQMLVKLFKLEVPEILEAIIQIKSVARDPGSKAKIA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA---LRPAIVT 297
VF+SDSSIDPVG+CVG+RG+RV+AV EL EKIDIV+WS D A F++NA L P +T
Sbjct: 241 VFASDSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNALAPLAPGEIT 300
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
K+++DED ++EV+V +E S+AIGRRGQNVRLASQLTGW IDI+TEE++S R ++F
Sbjct: 301 KILIDEDRHKVEVVVSQENQSIAIGRRGQNVRLASQLTGWNIDIMTEEQESKRRNEEFLT 360
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
T+ FM+A++V+E+I LL GF VE++A +IS + IEGF+EE AVEI+ RA Y+
Sbjct: 361 STELFMEALDVEEVIGQLLSVTGFNSVEQIASSEISTLTRIEGFEEELAVEIKNRAINYV 420
Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477
+ + + KK+ +LGV +EL I + ++ + E GIKT+EDL SV++
Sbjct: 421 DLKNEKIIKKLEDLGVEQELIDILELSLELILKFAEYGIKTIEDLGEMSVNE-------- 472
Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYK 508
F + + ++ +I A+
Sbjct: 473 ------FKNLAPNSNITDENIKLLIKTAKQH 497
>gi|285017807|ref|YP_003375518.1| transcription elongation protein nusa [Xanthomonas albilineans GPE
PC73]
gi|283473025|emb|CBA15530.1| probable transcription elongation protein nusa [Xanthomonas
albilineans]
Length = 503
Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats.
Identities = 207/505 (40%), Positives = 317/505 (62%), Gaps = 20/505 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66
ELL + DAVA EK + R+V+ + ++ AA+ Y RV I+ + G FR
Sbjct: 4 ELLLVVDAVANEKGVPREVIFDAIEAALASAAKKRYPDQDVLTRVTIDHKEGSYETFRRW 63
Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
EVV + +E+ QI L A D +D+G + + + DFGR+A Q+AKQVI+Q+VR
Sbjct: 64 EVVADDVVMESPDRQIRLMDAVDEAEGVDVGDYIEEQIENPDFGRIAAQAAKQVIVQRVR 123
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182
EAER + +KD+VGE+++G VKR E GN+ VDLG + + I +D+ I R+ LR GDRV
Sbjct: 124 EAERQQVVDAWKDRVGELVTGVVKRAERGNIYVDLGGNAEAFIPKDKGIPRDVLRAGDRV 183
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
+ Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+AV
Sbjct: 184 RGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIAVL 243
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
+ D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++D
Sbjct: 244 AHDTRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNDNPANFVINAMAPAEVQSIIVD 303
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
E+ +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T E+ + + + Q F
Sbjct: 304 EEKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTAEQVAAKSEAEQAVARQLF 363
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
M + VDE IA +LVAEGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L +
Sbjct: 364 MDKLEVDEEIAAILVAEGFNSVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNEAL 423
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482
++ + +L S+PG+D AL +G++T EDL+ + D++L +
Sbjct: 424 AAEESDDGGVPAADLLSLPGMDEATAYALAGHGVRTSEDLSDLAADEILEFGIE------ 477
Query: 483 KFDGFLSSLGTPKDQVESMIIHARY 507
++ +I+ AR
Sbjct: 478 ---------DMDHERAAVLILAARA 493
>gi|239946885|ref|ZP_04698638.1| transcription elongation factor NusA [Rickettsia endosymbiont of
Ixodes scapularis]
gi|239921161|gb|EER21185.1| transcription elongation factor NusA [Rickettsia endosymbiont of
Ixodes scapularis]
Length = 503
Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats.
Identities = 242/511 (47%), Positives = 357/511 (69%), Gaps = 17/511 (3%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
M + +E+LQI D+VA EK I +++++S + ++Q A R YG +I+ +IN +TG+I
Sbjct: 1 MSNIGNVEILQIIDSVAREKGISKEILISTVEQAVQVAGRKKYGNEYNIKAQINRKTGEI 60
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
+L R+L++VE VE+Y QISL+ A ++P IG + + LPP+D RV+ Q+AKQVI Q
Sbjct: 61 NLLRILKIVENVEDYLTQISLEEALIKNPEAKIGDEIYEYLPPIDHARVSAQAAKQVITQ 120
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
+V EAER++QY +FKD+ GEII+G VKR+EYG++IVDL ++ +I++D+ I EN +P D
Sbjct: 121 RVIEAEREKQYHDFKDRKGEIINGIVKRIEYGDIIVDLSRAEAIIKKDQLIKGENFKPND 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
R+K+Y+ DVR+E +GPQ+ LSR Q +VKLF +EVPEI I+Q+K+++RDPGS+AK+A
Sbjct: 181 RIKAYVQDVRQETKGPQIFLSRVDNQMLVKLFKLEVPEILEDIIQIKSIARDPGSKAKIA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA---LRPAIVT 297
VF+SDSSIDPVG+CVG+RG+RV+AV EL EKIDIV+WS D A F++NA L P +T
Sbjct: 241 VFASDSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNALAPLAPGEIT 300
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
K+++DED ++EV+V +E S+AIGRRGQNVRLAS+LTGW IDI+TEE++S R ++F
Sbjct: 301 KILIDEDRHKVEVVVSQENQSIAIGRRGQNVRLASKLTGWNIDIMTEEQESKRRNEEFLT 360
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
T+ FM+A++V+E+I LL GF VE++A +IS + IEGF+EE AVEI+ RA Y+
Sbjct: 361 STELFMEALDVEEVIGQLLSVTGFNSVEQIASSEISTLTRIEGFEEELAVEIKNRAINYV 420
Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477
+ + + KK+ +LGV +EL I + ++ + E GIKT+EDL SV++
Sbjct: 421 DLKNEKIIKKLEDLGVEQELIDILELPLELILKFAEYGIKTIEDLGEMSVNE-------- 472
Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYK 508
F + + ++ +I AR
Sbjct: 473 ------FKNLAPNSNITDENIKLLIKTARQH 497
>gi|254521780|ref|ZP_05133835.1| N utilization substance protein A [Stenotrophomonas sp. SKA14]
gi|219719371|gb|EED37896.1| N utilization substance protein A [Stenotrophomonas sp. SKA14]
Length = 503
Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats.
Identities = 202/471 (42%), Positives = 314/471 (66%), Gaps = 5/471 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66
ELL + DAVA EK + R+V+ + ++ AA+ Y RV I+ + G +R
Sbjct: 4 ELLLVVDAVANEKGVPREVIFDAIEAALASAAKKRYPDEEVLTRVVIDHKDGSYETYRRW 63
Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
EVV + +E+ QI L A D +D+G + + + DFGR+A Q+AKQVI+Q+VR
Sbjct: 64 EVVADDVVMESPDRQIRLMDAVDEAEGVDVGDYIEEQIENPDFGRIAAQAAKQVIVQRVR 123
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182
EAER + +KD+VGE+I+G VKR E GN+ VDLG + +G I +D+ I R+ LR GDRV
Sbjct: 124 EAERQQVVDAWKDRVGELITGVVKRAERGNIYVDLGGNAEGFIPKDKGIPRDVLRAGDRV 183
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
+ Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+AV
Sbjct: 184 RGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIAVL 243
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
+ D DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++D
Sbjct: 244 AHDQRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNDNPANFVINAMAPAEVQSIIVD 303
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
ED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T+++ + + + Q F
Sbjct: 304 EDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTQDQVTAKSEAEQASARQLF 363
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
M + VDE IA +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L +
Sbjct: 364 MDKLEVDEEIAGILVSEGFGTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNEAL 423
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473
+++ + + +++L S+ G+D AL +G++T EDL+ + D+++ +
Sbjct: 424 AVEEGLEDGQPAQDLLSLKGMDEATAYALAGHGVRTSEDLSDLAADEVMDF 474
>gi|21243417|ref|NP_642999.1| transcription elongation factor NusA [Xanthomonas axonopodis pv.
citri str. 306]
gi|21108968|gb|AAM37535.1| N utilization substance protein A [Xanthomonas axonopodis pv. citri
str. 306]
Length = 503
Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats.
Identities = 200/471 (42%), Positives = 314/471 (66%), Gaps = 5/471 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66
ELL + DAVA EK + R+V+ + ++ AA+ Y RV I+ + G +R
Sbjct: 4 ELLLVVDAVANEKGVPREVIFEAIEAALASAAKKRYPDQDVLARVTIDHKDGTYETYRRW 63
Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
EVV + +E+ Q+ L A D +++G + + + DFGR+A Q+AKQVI+Q+VR
Sbjct: 64 EVVADDVVMESPDRQVRLMDAIDEADGVEVGDYIEEQIENPDFGRIAAQAAKQVIVQRVR 123
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182
EAER + +KD+VGE+I+G VKR E GN+ VDLG + + I +D+ I R+ LRPGDRV
Sbjct: 124 EAERQQVVDAWKDRVGELITGVVKRAERGNIFVDLGGNAEAFIPKDKGIPRDVLRPGDRV 183
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
+ Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+AV
Sbjct: 184 RGYLAEVRSEPRGPQLFVSRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIAVI 243
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
+ D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++D
Sbjct: 244 AHDARTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSIIVD 303
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
ED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T ++ + + + Q F
Sbjct: 304 EDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTADQVAAKSEAEQAAARQLF 363
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
M + VDE I+ +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L +
Sbjct: 364 MDRLEVDEEISAILVSEGFNTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNAAL 423
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473
++ + +E+L ++ G+D + AL E+G++T EDL+ + D+++ +
Sbjct: 424 AEEEGLEGTQPTEDLLALEGMDEETAFALAEHGVRTSEDLSDLAADEIVDF 474
>gi|190575263|ref|YP_001973108.1| transcription elongation factor NusA [Stenotrophomonas maltophilia
K279a]
gi|190013185|emb|CAQ46818.1| putative N utilization substance protein A [Stenotrophomonas
maltophilia K279a]
Length = 503
Score = 421 bits (1083), Expect = e-115, Method: Composition-based stats.
Identities = 203/471 (43%), Positives = 314/471 (66%), Gaps = 5/471 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66
ELL + DAVA EK + R+V+ + ++ AA+ Y RV I+ + G FR
Sbjct: 4 ELLLVVDAVANEKGVPREVIFDAIEAALASAAKKRYPDEEVLTRVVIDHKDGSYETFRRW 63
Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
EVV + +E+ QI L A D +D+G + + + DFGR+A Q+AKQVI+Q+VR
Sbjct: 64 EVVADDVVMESPDRQIRLMDAVDEAEGVDVGDYIEEQIENPDFGRIAAQAAKQVIVQRVR 123
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182
EAER + +KD+VGE+I+G VKR E GN+ VDLG + +G I +D+ I R+ LR GDRV
Sbjct: 124 EAERQQVVDAWKDRVGELITGVVKRAERGNIYVDLGGNAEGFIPKDKGIPRDVLRAGDRV 183
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
+ Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+AV
Sbjct: 184 RGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIAVL 243
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
+ D DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++D
Sbjct: 244 AQDQRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNDNPANFVINAMAPAEVQSIIVD 303
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
ED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T+++ + + + Q F
Sbjct: 304 EDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTQDQVTAKSEAEQASARQLF 363
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
M + VDE IA +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L +
Sbjct: 364 MDKLEVDEEIAGILVSEGFGTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNEAL 423
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473
+++ + + +++L S+ G+D AL +G++T EDL+ + D+++ +
Sbjct: 424 AVEEGLEDGQPAQDLLSLKGMDEATAYALAGHGVRTSEDLSDLAADEVMDF 474
>gi|78048394|ref|YP_364569.1| transcription elongation factor NusA [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|294666762|ref|ZP_06731996.1| transcription elongation factor NusA [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|325924690|ref|ZP_08186128.1| transcription termination factor NusA [Xanthomonas perforans
91-118]
gi|78036824|emb|CAJ24517.1| N utilization substance (transcription elongation) protein A
[Xanthomonas campestris pv. vesicatoria str. 85-10]
gi|292603423|gb|EFF46840.1| transcription elongation factor NusA [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|325544896|gb|EGD16241.1| transcription termination factor NusA [Xanthomonas perforans
91-118]
Length = 503
Score = 421 bits (1083), Expect = e-115, Method: Composition-based stats.
Identities = 200/471 (42%), Positives = 314/471 (66%), Gaps = 5/471 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66
ELL + DAVA EK + R+V+ + ++ AA+ Y RV I+ + G +R
Sbjct: 4 ELLLVVDAVANEKGVPREVIFEAIEAALASAAKKRYPDQDVLARVTIDHKDGTYETYRRW 63
Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
EVV + +E+ Q+ L A D +++G + + + DFGR+A Q+AKQVI+Q+VR
Sbjct: 64 EVVADDVVMESPDRQVRLMDAIDEADGVEVGDYIEEQIENPDFGRIAAQAAKQVIVQRVR 123
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182
EAER + +KD+VGE+I+G VKR E GN+ VDLG + + I +D+ I R+ LRPGDRV
Sbjct: 124 EAERQQVVDAWKDRVGELITGVVKRAERGNIFVDLGGNAEAFIPKDKGIPRDVLRPGDRV 183
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
+ Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+AV
Sbjct: 184 RGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIAVI 243
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
+ D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++D
Sbjct: 244 AHDARTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSIIVD 303
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
ED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T ++ + + + Q F
Sbjct: 304 EDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTADQVAAKSEAEQAAARQLF 363
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
M + VDE I+ +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L +
Sbjct: 364 MDRLEVDEEISAILVSEGFNTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNAAL 423
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473
++ + +E+L ++ G+D + AL E+G++T EDL+ + D+++ +
Sbjct: 424 AEEEGLEGTQPTEDLLALEGMDEETAFALAEHGVRTSEDLSDLAADEIVDF 474
>gi|325921396|ref|ZP_08183253.1| transcription termination factor NusA [Xanthomonas gardneri ATCC
19865]
gi|325548154|gb|EGD19151.1| transcription termination factor NusA [Xanthomonas gardneri ATCC
19865]
Length = 503
Score = 421 bits (1083), Expect = e-115, Method: Composition-based stats.
Identities = 202/471 (42%), Positives = 314/471 (66%), Gaps = 5/471 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66
ELL + DAVA EK + R+V+ + ++ AA+ Y RV I+ + G+ +R
Sbjct: 4 ELLLVVDAVANEKGVPREVIFDAIEAALASAAKKRYPDQDVLARVTIDHKDGNYETYRRW 63
Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
EVV + +E+ Q+ L A D +D+G + + + DFGR+A Q+AKQVI+Q+VR
Sbjct: 64 EVVADDVVMESPDRQVRLMDAIDEADGVDVGDYIEEQIENPDFGRIAAQAAKQVIVQRVR 123
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182
EAER + +KD+VGE+I+G VKR E GN+ VDLG + + I +D+ I R+ LRPGDRV
Sbjct: 124 EAERQQVVDAWKDRVGELITGVVKRAERGNIFVDLGGNAEAFIPKDKGIPRDVLRPGDRV 183
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
+ Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+AV
Sbjct: 184 RGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIAVI 243
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
+ D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++D
Sbjct: 244 AHDTRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSIIVD 303
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
ED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T ++ + + + Q F
Sbjct: 304 EDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTADQVAAKSEAEQTSARQLF 363
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
M + VDE IA +LV EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L +
Sbjct: 364 MDRLEVDEEIAAILVTEGFNTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNAAL 423
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473
++ + +E+L ++ G+D + AL E+G++T EDL+ + D+++ +
Sbjct: 424 AEEEGLEGTQPTEDLLALEGMDEETAFALAEHGVRTSEDLSDLAADEIVDF 474
>gi|325915554|ref|ZP_08177865.1| transcription termination factor NusA [Xanthomonas vesicatoria ATCC
35937]
gi|325538270|gb|EGD09955.1| transcription termination factor NusA [Xanthomonas vesicatoria ATCC
35937]
Length = 503
Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats.
Identities = 201/471 (42%), Positives = 315/471 (66%), Gaps = 5/471 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66
ELL + DAVA EK + R+V+ + ++ AA+ Y RV I+ + G+ FR
Sbjct: 4 ELLLVVDAVANEKGVPREVIFDAIEAALASAAKKRYPDQDVLTRVTIDHKDGNYETFRRW 63
Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
EVV + +E+ Q+ L A D +++G + + + DFGR+A Q+AKQVI+Q+VR
Sbjct: 64 EVVADDVVMESPDRQVRLMDAIDEADGVEVGDYIEEQIENPDFGRIAAQAAKQVIVQRVR 123
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182
EAER + +KD+VGE+I+G VKR E GN+ VDLG + + I +D+ I R+ LRPGDRV
Sbjct: 124 EAERQQVVDAWKDRVGELITGVVKRAERGNIFVDLGGNAEAFIPKDKGIPRDVLRPGDRV 183
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
+ Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+AV
Sbjct: 184 RGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIAVI 243
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
+ D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++D
Sbjct: 244 AHDTRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSIIVD 303
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
ED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T ++ + + + Q F
Sbjct: 304 EDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTADQVAAKSEAEQASARQLF 363
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
M + VDE I+ +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L +
Sbjct: 364 MDRLEVDEEISAILVSEGFNTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNAAL 423
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473
++ + +E+L ++ G+D + AL E+G++T EDL+ + D+++ +
Sbjct: 424 AEEEGLEGTQPTEDLLALEGMDEETAFALAEHGVRTSEDLSDLAADEIVDF 474
>gi|289665188|ref|ZP_06486769.1| transcription elongation factor NusA [Xanthomonas campestris pv.
vasculorum NCPPB702]
gi|289667364|ref|ZP_06488439.1| transcription elongation factor NusA [Xanthomonas campestris pv.
musacearum NCPPB4381]
Length = 503
Score = 420 bits (1081), Expect = e-115, Method: Composition-based stats.
Identities = 201/471 (42%), Positives = 314/471 (66%), Gaps = 5/471 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66
ELL + DAVA EK + R+V+ + ++ AA+ Y RV I+ + G +R
Sbjct: 4 ELLLVVDAVANEKGVPREVIFDAIEAALASAAKKRYPDQDVLARVTIDHKDGTYETYRRW 63
Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
EVV + +E+ Q+ L A D +D+G + + + DFGR+A Q+AKQVI+Q+VR
Sbjct: 64 EVVADDVVMESPDRQVRLMDAIDEADGVDVGDYIEEQIENPDFGRIAAQAAKQVIVQRVR 123
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182
EAER + +KD+VGE+I+G VKR E GN+ VDLG + + I +D+ I R+ LRPGDRV
Sbjct: 124 EAERQQVVDAWKDRVGELITGVVKRAERGNIFVDLGGNAEAFIPKDKGIPRDVLRPGDRV 183
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
+ Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+AV
Sbjct: 184 RGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIAVI 243
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
+ D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++D
Sbjct: 244 AHDTRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSIIVD 303
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
ED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T ++ + + + Q F
Sbjct: 304 EDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTADQVAAKSEAEQAAARQLF 363
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
M + VDE I+ +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L +
Sbjct: 364 MDRLEVDEEISAILVSEGFNTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNAAL 423
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473
++ + +E+L ++ G+D + AL E+G++T EDL+ + D+++ +
Sbjct: 424 AEEEGLEGTQPTEDLLALEGMDEETAFALAEHGVRTSEDLSDLAADEIVDF 474
>gi|166712599|ref|ZP_02243806.1| transcription elongation factor NusA [Xanthomonas oryzae pv.
oryzicola BLS256]
Length = 503
Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats.
Identities = 201/471 (42%), Positives = 315/471 (66%), Gaps = 5/471 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66
ELL + DAVA EK + R+V+ + ++ AA+ Y RV I+ + G +R
Sbjct: 4 ELLLVVDAVANEKGVPREVIFDAIEAALASAAKKRYPDQDVLARVTIDHKDGTYETYRRW 63
Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
EVV + +E+ Q+ L A D +D+G + + + DFGR+A Q+AKQVI+Q+VR
Sbjct: 64 EVVADDVVMESPDRQVRLMDAIDEADGVDVGDYIEEQIENPDFGRIAAQAAKQVIVQRVR 123
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182
EAER + +KD+VGE+I+G VKR E GN+ VDLG + + I +D+ I R+ LRPGDRV
Sbjct: 124 EAERQQVVDAWKDRVGELITGVVKRAERGNIFVDLGGNAEAFIPKDKGIPRDVLRPGDRV 183
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
+ Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+AV
Sbjct: 184 RGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIAVI 243
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
+ D+ DP+GAC+GMRGSRVQA+ EL E++DIV+W+ + A FVINA+ PA V +++D
Sbjct: 244 AHDARTDPIGACIGMRGSRVQAISNELNGERVDIVLWNENPANFVINAMAPAEVQSIIVD 303
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
ED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T ++ + + + Q F
Sbjct: 304 EDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTADQVAAKSEAEQAAARQLF 363
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
M + VDE I+ +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L +
Sbjct: 364 MDRLEVDEEISAILVSEGFNTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNAAL 423
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473
++ + +E+L ++ G+D + VAL E+G++T EDL+ + D+++ +
Sbjct: 424 AEEEGLEGTQPTEDLLALEGMDEETAVALAEHGVRTSEDLSDLAADEIVDF 474
>gi|58582842|ref|YP_201858.1| transcription elongation factor NusA [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|84624709|ref|YP_452081.1| transcription elongation factor NusA [Xanthomonas oryzae pv. oryzae
MAFF 311018]
gi|58427436|gb|AAW76473.1| N utilization substance protein A [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|84368649|dbj|BAE69807.1| N utilization substance protein A [Xanthomonas oryzae pv. oryzae
MAFF 311018]
Length = 503
Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats.
Identities = 200/471 (42%), Positives = 314/471 (66%), Gaps = 5/471 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66
ELL + DAVA EK + R+V+ + ++ AA+ Y RV I+ + G +R
Sbjct: 4 ELLLVVDAVANEKGVPREVIFDAIEAALASAAKKRYPDQDVLARVTIDHKDGTYETYRRW 63
Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
EVV + +E+ Q+ L A D +D+G + + + DFGR+A Q+AKQVI+Q+VR
Sbjct: 64 EVVADDVVMESPDRQVRLMDAIDEADGVDVGDYIEEQIENPDFGRIAAQAAKQVIVQRVR 123
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182
EAER + +KD+VGE+I+G VKR E GN+ VDLG + + I +D+ I R+ LRPGDRV
Sbjct: 124 EAERQQVVDAWKDRVGELITGVVKRAERGNIFVDLGGNAEAFIPKDKGIPRDVLRPGDRV 183
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
+ Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++ A +RDPG RAK+AV
Sbjct: 184 RGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEINACARDPGDRAKIAVI 243
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
+ D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++D
Sbjct: 244 AHDARTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSIIVD 303
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
ED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T ++ + + + + F
Sbjct: 304 EDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTADQVAAKSEAEQAAARKLF 363
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
M + VDE I+ +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L +
Sbjct: 364 MDRLEVDEEISAILVSEGFNTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNAAL 423
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473
++ + +E+L ++ G+D + VAL E+G++T EDL+ + D+++ +
Sbjct: 424 AEEEGLEGTQPTEDLLALEGMDEETAVALAEHGVRTSEDLSDLAADEIVDF 474
>gi|21231945|ref|NP_637862.1| transcription elongation factor NusA [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|188991044|ref|YP_001903054.1| transcription elongation factor NusA [Xanthomonas campestris pv.
campestris str. B100]
gi|21113674|gb|AAM41786.1| N utilization substance protein A [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|167732804|emb|CAP50998.1| N utilization substance (transcription elongation) protein A
[Xanthomonas campestris pv. campestris]
Length = 503
Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats.
Identities = 202/471 (42%), Positives = 315/471 (66%), Gaps = 5/471 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66
ELL + DAVA EK + R+V+ + ++ AA+ Y RV I+ + G+ FR
Sbjct: 4 ELLLVVDAVANEKGVPREVIFDAIEAALASAAKKRYPDQDVLTRVTIDHKDGNYETFRRW 63
Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
EVV + +E+ Q+ L A + +D+G V + + DFGR+A Q+AKQVI+Q+VR
Sbjct: 64 EVVADDVVMESPDRQVRLMDAIEEADGVDVGDYVEEQIENPDFGRIAAQAAKQVIVQRVR 123
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182
EAER + +KD+VGE+I+G VKR E GN+ VDLG + + I +D+ I R+ LRPGDRV
Sbjct: 124 EAERQQVVDAWKDRVGELITGVVKRAERGNIFVDLGGNAEAFIPKDKGIPRDVLRPGDRV 183
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
+ Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+AV
Sbjct: 184 RGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIAVI 243
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
+ D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++D
Sbjct: 244 AHDTRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSIIVD 303
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
ED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T ++ + + + Q F
Sbjct: 304 EDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTADQVAAKSEAEQASARQLF 363
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
M + VDE I+ +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L +
Sbjct: 364 MDRLEVDEEISAILVSEGFNTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNAAL 423
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473
++ + +E+L ++ G+D + AL E+G++T EDL+ + D+++ +
Sbjct: 424 AEEEGLEGTQPTEDLLALEGMDEETAFALAEHGVRTSEDLSDLAADEIVDF 474
>gi|194366589|ref|YP_002029199.1| transcription elongation factor NusA [Stenotrophomonas maltophilia
R551-3]
gi|194349393|gb|ACF52516.1| NusA antitermination factor [Stenotrophomonas maltophilia R551-3]
Length = 503
Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats.
Identities = 202/471 (42%), Positives = 314/471 (66%), Gaps = 5/471 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66
ELL + DAVA EK + R+V+ + ++ AA+ Y RV I+ + G FR
Sbjct: 4 ELLLVVDAVANEKGVPREVIFDAIEAALASAAKKRYPDEEVLTRVVIDHKDGSYETFRRW 63
Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
EVV + +E+ QI L A D +D+G + + + DFGR+A Q+AKQVI+Q+VR
Sbjct: 64 EVVADDVVMESPDRQIRLMDAVDEAEGVDVGDYIEEQIENPDFGRIAAQAAKQVIVQRVR 123
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182
EAER + +KD+VGE+I+G VKR E GN+ VDLG + +G I +D+ I R+ LR GDRV
Sbjct: 124 EAERQQVVDAWKDRVGELITGVVKRAERGNIYVDLGGNAEGFIPKDKGIPRDVLRAGDRV 183
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
+ Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+AV
Sbjct: 184 RGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIAVL 243
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
+ D DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++D
Sbjct: 244 AHDQRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNDNPANFVINAMAPAEVQSIIVD 303
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
ED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T+++ + + + Q F
Sbjct: 304 EDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTQDQVTAKSEAEQASARQLF 363
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
M + VDE IA +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L +
Sbjct: 364 MDKLEVDEEIAGILVSEGFGTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNEAL 423
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473
+++ + + +++L S+ G+D AL +G++T E+L+ + D+++ +
Sbjct: 424 AVEEGLEDGQPAQDLLSLKGMDEATAYALAGHGVRTSEELSDLAADEVMDF 474
>gi|66767928|ref|YP_242690.1| transcription elongation factor NusA [Xanthomonas campestris pv.
campestris str. 8004]
gi|66573260|gb|AAY48670.1| N utilization substance protein A [Xanthomonas campestris pv.
campestris str. 8004]
Length = 503
Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats.
Identities = 202/471 (42%), Positives = 315/471 (66%), Gaps = 5/471 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66
ELL + DAVA EK + R+V+ + ++ AA+ Y RV I+ + G+ FR
Sbjct: 4 ELLLVVDAVANEKGVPREVIFDAIEAALASAAKKRYPDQDVLTRVTIDHKDGNYETFRRW 63
Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
EVV + +E+ Q+ L A + +D+G V + + DFGR+A Q+AKQVI+Q+VR
Sbjct: 64 EVVADDVVMESPDRQVRLMDAIEEADGVDVGDYVEEQIENPDFGRIAAQAAKQVIVQRVR 123
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182
EAER + +KD+VGE+I+G VKR E GN+ VDLG + + I +D+ I R+ LRPGDRV
Sbjct: 124 EAERQQVVDAWKDRVGELITGVVKRAERGNIFVDLGGNAEAFIPKDKGIPRDVLRPGDRV 183
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
+ Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+AV
Sbjct: 184 RGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIAVI 243
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
+ D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++D
Sbjct: 244 AHDTRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSIIVD 303
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
ED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T ++ + + + Q F
Sbjct: 304 EDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTADQVAAKSEAEQASARQLF 363
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
M + VDE I+ +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L +
Sbjct: 364 MDRLEVDEEISAILVSEGFNTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALVNAAL 423
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473
++ + +E+L ++ G+D + AL E+G++T EDL+ + D+++ +
Sbjct: 424 AEEEGLEGTQPTEDLLALEGMDEETAFALAEHGVRTSEDLSDLAADEIVDF 474
>gi|298369368|ref|ZP_06980686.1| transcription termination/antitermination protein NusA [Neisseria
sp. oral taxon 014 str. F0314]
gi|298283371|gb|EFI24858.1| transcription termination/antitermination protein NusA [Neisseria
sp. oral taxon 014 str. F0314]
Length = 500
Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats.
Identities = 204/516 (39%), Positives = 322/516 (62%), Gaps = 30/516 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66
E+LQ+A+A+A EK++D +VV + ++ AA+ D+RVEI+ +TG+ FR
Sbjct: 4 EMLQLAEALASEKNVDTEVVFQALEFALSTAAKKKANREHMDVRVEIDRDTGEYRTFRRW 63
Query: 67 EVV--EEVENYTCQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+V E+ + +++ ++ P I IG + L FGR A Q+AKQ+I+Q++
Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTEIQIGEYYEEQLENEGFGRQAAQTAKQIILQRI 123
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180
R+AER++ EF + +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD
Sbjct: 124 RDAEREQILNEFLARKEDIVSGTVKRVERHGIIVEVVSGKLDALIPRDQMIPRENFRSGD 183
Query: 181 RVKSYIYDVRREQ--RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
R+++ + V QV+LSRT F+ KL+ MEVPEI +G ++++AV+RDPG RAK
Sbjct: 184 RIRALLLRVDEIGSTGRKQVILSRTDKNFLAKLYAMEVPEIEDGSLEIRAVARDPGQRAK 243
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP++A FVINAL PA VT+
Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPETAQFVINALSPAEVTR 303
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
+V+DED ++V+V ++QL+LAIGR GQNVRLAS LT W ++I+T E + +
Sbjct: 304 IVIDEDKHAVDVVVAEDQLALAIGRGGQNVRLASDLTEWQLNIMTVAEADERNEAEDEAI 363
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
+ F + +N+DE A +L+ EGFA +EE+A V +E+ I+GFDEE ++ RAR+ +
Sbjct: 364 RKLFTEHLNIDEETADILLQEGFATLEEVAYVPAAELLEIDGFDEEIVEVLRNRARDAIL 423
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ I ++K+ + V+++L S+ G+D+++ L + GI T +DLA +VD+L+ +
Sbjct: 424 TLAIASEEKLED--VADDLRSLEGLDTEMLRDLAQAGIITRDDLAELAVDELIEIT---- 477
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
G +++ + +I+ AR W +
Sbjct: 478 -------------GVTEEEAKKVILAAREH--WFTE 498
>gi|157827030|ref|YP_001496094.1| transcription elongation factor NusA [Rickettsia bellii OSU 85-389]
gi|157802334|gb|ABV79057.1| transcription elongation factor NusA [Rickettsia bellii OSU 85-389]
Length = 500
Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats.
Identities = 233/508 (45%), Positives = 350/508 (68%), Gaps = 14/508 (2%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
M + +E+LQI D+VA EK I ++V++S + ++Q A R YG +I+ +IN +TG+I
Sbjct: 1 MSNIGNIEILQIIDSVAREKGISKEVLISTVEQAVQVAGRKKYGNEYNIKAQINRKTGEI 60
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
+L R+L+VVE VE+Y QIS+ A +DP I G + + LP +D RVA Q+AKQVI Q
Sbjct: 61 NLLRVLKVVENVEDYLTQISITEALQKDPEAKIDGEIYEYLPSIDHARVAAQAAKQVITQ 120
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
++ EAER++QY +FKD+ GE+I+G VKR+EYG++IVDL ++ +I+R++ I EN + GD
Sbjct: 121 RIIEAEREKQYHDFKDRKGEVINGVVKRIEYGDIIVDLNRAEAIIKREQQIKGENFKVGD 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
RVK+Y+ DVR E +GPQ+ LSR + + KLF +EV EIY G +++KAV+RDPGS+AK+A
Sbjct: 181 RVKAYVQDVRHETKGPQIFLSRADDRMLAKLFELEVTEIYEGGIEIKAVARDPGSKAKIA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
VF+S++ IDP+G+CVG++G+RV+A+ EL EKIDI++W+ D A F+INAL PA + K++
Sbjct: 241 VFASENGIDPIGSCVGIKGNRVRAITNELNGEKIDIILWNRDVAQFIINALAPAEILKIL 300
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DED ++EV+V +E SLAIGRRGQNVRLA++LTGW IDI+TEE++S R ++F T+
Sbjct: 301 IDEDKRKVEVVVSQENQSLAIGRRGQNVRLAAKLTGWNIDIMTEEQESKRRNEEFVTSTE 360
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
FM+A++V+E+I LL GF VE++ I+ + +IEGF+EE AVEI+ RA Y+
Sbjct: 361 LFMEALDVEEVIGQLLSVSGFNTVEQIVNSDINALMNIEGFEEELAVEIRNRAINYVNLR 420
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ + K++ ELGV +EL I I ++ + E GIKT+EDL SV++
Sbjct: 421 NEKIVKELEELGVEQELIDILEIQPELILKFAEYGIKTIEDLGEMSVNE----------- 469
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYK 508
F + + ++ +I A+
Sbjct: 470 ---FKNLAPNSNITDENIKLLIKTAKQH 494
>gi|116515165|ref|YP_802794.1| NusA [Buchnera aphidicola str. Cc (Cinara cedri)]
gi|116257019|gb|ABJ90701.1| transcription pausing L factor [Buchnera aphidicola str. Cc (Cinara
cedri)]
Length = 495
Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats.
Identities = 187/510 (36%), Positives = 287/510 (56%), Gaps = 19/510 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + DAV++EKSI R+ + + +++ A + Y +IRV IN TG + +R
Sbjct: 2 NKEILSVVDAVSHEKSIPREKIFQALESALEIATKKKYNQDINIRVCINRSTGSFNTYRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV V N T +I+L+ AR + I + + D + + F R+A Q AKQVIIQKVREA
Sbjct: 62 WLVVNNVFNPTKEITLEAARFENKKIQLCDYIEDCIDSVTFDRIATQIAKQVIIQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
E++ +F K G+II G VK++ +I+D+GN+ +G+I R++ + REN R DRV+
Sbjct: 122 EKEIILNKFDKKKGQIIIGIVKKISRDYIILDVGNNIEGIIMREDMLPRENFRINDRVRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y++ E++G Q+ +SR+ +++LF +EVPEI +++KA++RDPG R+K+AV +
Sbjct: 182 ILYNISYEKQGAQLFISRSKSDMLIELFRIEVPEIREKFIEIKAIARDPGLRSKIAVTTY 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRGSRVQAV EL E+IDI++W + FVIN++ PA V+ + LD
Sbjct: 242 DERIDPVGACVGMRGSRVQAVSNELCGERIDIILWDNNPKKFVINSMAPADVSSIFLDNT 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
I + V L+ AIGR GQNVRLASQLTGW ++IIT ++ N
Sbjct: 302 NHVINIEVKLCNLAQAIGRNGQNVRLASQLTGWELNIITSNPIIKIKKSKKNNFFDILKN 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
N E L++ GF+ ++ +A I+++ SI+G + + +Q +A LE
Sbjct: 362 KFNFTENDILLVIHSGFSSIKSIAYASINQLLSIKGIKTDVVLNMQKKAIFILENDKKKS 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
K ++ ++ E ++ I+ I L E I T+E LA S+DDL S
Sbjct: 422 IKIYKKKYLNSEFANLKNINKFIIQQLIEKKICTLEHLAEQSIDDLHDISFLFFRTSW-- 479
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
S+I+ AR + W +
Sbjct: 480 ---------------SLIMEAR-NICWFNE 493
>gi|225023298|ref|ZP_03712490.1| hypothetical protein EIKCOROL_00151 [Eikenella corrodens ATCC
23834]
gi|224943943|gb|EEG25152.1| hypothetical protein EIKCOROL_00151 [Eikenella corrodens ATCC
23834]
Length = 498
Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats.
Identities = 201/517 (38%), Positives = 316/517 (61%), Gaps = 29/517 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66
E+LQ+A+A+A EK+++ +VV + ++ AA+ D+RV I+ TG+ FR
Sbjct: 4 EMLQLAEALASEKNVESEVVFEALEFALSVAAKKKADREHMDVRVSIDRNTGEYHTFRRW 63
Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+V E+ Q +++ ++ P + IG + L + FGR A Q+AKQ+I+Q++
Sbjct: 64 LIVADEDYTYPDTQKTIEEIQEEFPDSPLQIGEYYEEELENVAFGRQAAQTAKQIILQRI 123
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182
R+AER++ EF + +++ GTVKRVE +IV++G D +I RD+ I REN R GDR+
Sbjct: 124 RDAEREQILQEFLARREDVVMGTVKRVERHGIIVEIGRLDALIPRDQCIPRENFRSGDRI 183
Query: 183 KSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
++ V + QV+LSRT +F+VKLF EVPEI +G++++K +RDPG RAK+A
Sbjct: 184 RALFLRVDEQGNSGRKQVILSRTSREFLVKLFEQEVPEIEDGLLEIKEAARDPGQRAKIA 243
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S+D+ IDP G C+G+RGSRV AV EL E++D+V+WSP++A FVINAL PA V++++
Sbjct: 244 VKSNDARIDPQGTCIGVRGSRVNAVSNELAGERVDVVLWSPETAQFVINALSPAEVSRIL 303
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DED ++VIV ++QL+ AIGR GQNVRLA+ LTGW ++I+T +E + + +
Sbjct: 304 IDEDNHSVDVIVAEDQLAPAIGRGGQNVRLAADLTGWQLNIMTVQEAEERHEAEDAQIRS 363
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
FMQ +NVDE A LL+ EGFA +EE+A V +E+ I GFDE T ++ RAR+ +
Sbjct: 364 LFMQHLNVDEQTADLLIEEGFAALEEVAYVPAAELVEI-GFDEATVETLRNRARDAILT- 421
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ + + + V EEL ++ GID + L + GI T + LA S D+L+ +
Sbjct: 422 -LAIMSEEKLDEVEEELKTLNGIDQDMLRDLAQAGITTRDSLAELSTDELIEIT------ 474
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517
G +++ +++I+ AR W + +
Sbjct: 475 -----------GVSEEEAKTVILAAREH--WFAETQE 498
>gi|91205427|ref|YP_537782.1| transcription elongation factor NusA [Rickettsia bellii RML369-C]
gi|91068971|gb|ABE04693.1| N utilization substance protein A, transcription termination factor
NusA [Rickettsia bellii RML369-C]
Length = 500
Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats.
Identities = 234/508 (46%), Positives = 351/508 (69%), Gaps = 14/508 (2%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
M + +E+LQI D+VA EK I ++V++S + ++Q A R YG +I+ +IN +TG+I
Sbjct: 1 MSNIGNIEILQIIDSVAREKGISKEVLISTVEQAVQVAVRKKYGNEYNIKAQINRKTGEI 60
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
+L R+L+VVE VE+Y QIS+ A +DP I G + + LP +D RVA Q+AKQVI Q
Sbjct: 61 NLLRVLKVVENVEDYLTQISITEALQKDPEAKIDGEIYEYLPSIDHARVAAQAAKQVITQ 120
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
++ EAER++QY +FKD+ GE+I+G VKR+EYG++IVDL ++ +I+R++ I EN + GD
Sbjct: 121 RIIEAEREKQYHDFKDRKGEVINGVVKRIEYGDIIVDLNRAEAIIKREQQIKGENFKVGD 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
RVK+Y+ DVR E +GPQ+ LSR + + KLF +EV EIY G +++KAV+RDPGS+AK+A
Sbjct: 181 RVKAYVQDVRHETKGPQIFLSRADDRMLAKLFELEVTEIYEGGIEIKAVARDPGSKAKIA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
VF+S++ IDP+G+CVG++G+RV+A+ EL EKIDI++W+ D A F+INAL PA + K++
Sbjct: 241 VFASENGIDPIGSCVGIKGNRVRAITNELNGEKIDIILWNRDVAQFIINALAPAEILKIL 300
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DED ++EV+V +E SLAIGRRGQNVRLA++LTGW IDI+TEE++S R ++F T+
Sbjct: 301 IDEDKRKVEVVVSQENQSLAIGRRGQNVRLAAKLTGWNIDIMTEEQESKRRNEEFVTSTE 360
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
FM+A++V+E+I LL GF VE++ I+ + +IEGF+EE AVEI+ RA Y+
Sbjct: 361 LFMEALDVEEVIGQLLSVSGFNTVEQIVNSDINALMNIEGFEEELAVEIRNRAINYVNLR 420
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ + K++ ELGV +EL I I ++ + E GIKT+EDL SV++
Sbjct: 421 NEKIVKELEELGVEQELIDILEIQPELILKFAEYGIKTIEDLGEMSVNE----------- 469
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYK 508
F S+ + ++ +I A+
Sbjct: 470 ---FKNLASNSNITDENIKLLIKTAKQH 494
>gi|319778227|ref|YP_004129140.1| Transcription termination protein NusA [Taylorella equigenitalis
MCE9]
gi|317108251|gb|ADU90997.1| Transcription termination protein NusA [Taylorella equigenitalis
MCE9]
Length = 490
Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats.
Identities = 192/509 (37%), Positives = 302/509 (59%), Gaps = 25/509 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E++ DA+A+EK++ + + + + ++ A + + +D+ V I+ +TG+ R E
Sbjct: 4 EIIHFIDAMAHEKNLPVEEIFAAIEGALASAMKKQFKEGADVVVRIDRDTGNYVGVRRWE 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV + ++ + A + P I +G + +PL P +FGR+ Q A+QVI+QK+R+
Sbjct: 64 VVPDEHGIQEPEREEIYSDAVEDHPDIKVGDFIEEPLEPQEFGRIGAQIARQVILQKMRD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
+ER + EF + +I+SG VKR++ G+V+V++G + + + E I +E+ R GDRV++
Sbjct: 124 SERKQWIDEFVAQNDKIVSGVVKRIDKGDVVVEVGKLEARLPKAEMIPKESFRIGDRVRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
Y+ + +E +G + LSR P+F+ +LF EVPEI G++++KA +RDPG RAK+AV +
Sbjct: 184 YVQKIDKEAKGQIIQLSRIDPEFLRELFEYEVPEIEQGLLEIKAAARDPGIRAKIAVQAY 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+G CVGMRGSRV AV EL E+IDIV+WS + A FVI+AL PA V+ +++DE+
Sbjct: 244 DKRIDPIGTCVGMRGSRVGAVRHELNGEQIDIVLWSDEPAEFVISALSPAHVSSIIVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++V+V E L+ AIG RGQNVRLAS LTGW I+I+T EE +Q++ + F
Sbjct: 304 KHVMDVVVDDENLAKAIGTRGQNVRLASDLTGWQINIMTPEESQARQQEEDQSIMKLFTD 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+++DE IA +L+ EGF +EE+A V E+ IEGFDEE E++ RAR L
Sbjct: 364 KLDIDEEIATVLIEEGFTGLEEIAYVPEQELLEIEGFDEELVHELRNRARHSLSVAAAER 423
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
+++ S+ L I G+ +++ L EN I T +DLA + D+LL
Sbjct: 424 DERVAS---SKGLIDIDGLTTEMVSKLVENNISTRDDLAELATDELLEI----------- 469
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513
L + +I+ AR W E
Sbjct: 470 ------LDVDEATAYDIILKARAH--WFE 490
>gi|329120394|ref|ZP_08249061.1| N utilization substance A [Neisseria bacilliformis ATCC BAA-1200]
gi|327462349|gb|EGF08675.1| N utilization substance A [Neisseria bacilliformis ATCC BAA-1200]
Length = 502
Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats.
Identities = 200/523 (38%), Positives = 313/523 (59%), Gaps = 31/523 (5%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLLE 67
+LQ+A+A+A EK++D DVV + ++ AAR G ++RVEI+ +TG+ +R
Sbjct: 1 MLQLAEALASEKNVDADVVFDALEVALSTAARKKSGREHMNVRVEIDRDTGEHRTYRRWL 60
Query: 68 VV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+V E+ + +++ ++ PS I IG + + FGR A +AKQ+I+Q++R
Sbjct: 61 IVADEDYTYPDEEKTIEEIQEEIPSTQIQIGEYYEEQIENESFGRQAAMTAKQIILQRIR 120
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGDR 181
+AER++ +F + +II+GTVKR E ++V+L G D +I RD+ I REN R GDR
Sbjct: 121 DAEREKVLNDFLENRDDIITGTVKRTERHGIVVELIPGKLDALIPRDQCIPRENFRSGDR 180
Query: 182 VKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
+++ V + QV+LSR +F+ KLF EVPEI +G+++++ +RDPG RAK+
Sbjct: 181 IRALFLRVEEIGQSGRKQVILSRASREFLAKLFEQEVPEIADGLLEIREAARDPGHRAKI 240
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV ++D IDP G C+G+RGSRV AV E+ E+ID+V+WSPD+A FVINAL PA V+++
Sbjct: 241 AVKANDQRIDPQGTCIGVRGSRVNAVTNEIGGERIDVVLWSPDTAQFVINALSPAEVSRI 300
Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
V+DED ++VIV ++QL+ AIGR GQNVRLA+ LTGW ++I+T +E +
Sbjct: 301 VIDEDNHAVDVIVAEDQLAPAIGRGGQNVRLAADLTGWQLNIMTVKEAEERHAAEDAAIR 360
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
F + +NVDE A +LV EGF +EE+A V E+ I GFDE T ++GRAR+ +
Sbjct: 361 SLFTEHLNVDEETATVLVEEGFTSLEEIAYVPSEELVEI-GFDEATVDALRGRARDAILS 419
Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479
+ + ++K++E ++E+L ++ G D + L + GI + LA SVD+L+ + + G
Sbjct: 420 LAMAKEEKLQE--IAEDLRTLDGTDEDMLRDLAQAGITDRDALAELSVDELIEITGVETG 477
Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEV 522
+ E +I+ AR W E+ E
Sbjct: 478 -----------------EAEKIILAARAH--WFEENNQEQGEA 501
>gi|307256660|ref|ZP_07538439.1| Transcription termination factor NusA [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306864708|gb|EFM96612.1| Transcription termination factor NusA [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
Length = 453
Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats.
Identities = 194/470 (41%), Positives = 299/470 (63%), Gaps = 20/470 (4%)
Query: 46 MSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMD 105
D+RV I+ +TGD FR VVE+V N T +ISL+ A+ +PS+ +G +V D + +
Sbjct: 2 DIDVRVVIDRKTGDFQTFRRWIVVEQVHNMTREISLEAAQYENPSVQLGDIVEDEVDSIP 61
Query: 106 FGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGV 164
F R+ +Q+A+QVI K+REAER++ +F+ ++ II+ TVK+V +I+DLGN ++ V
Sbjct: 62 FDRITMQTARQVISTKIREAERNKVIEQFRSQLNTIITATVKKVNREQIILDLGNQAEAV 121
Query: 165 IRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224
I R++ + REN RPGDRV+ +Y ++ E +GPQ+ L+R P + +LF +EVPEI ++
Sbjct: 122 IVREDMLPRENFRPGDRVRGVLYAIKPESKGPQLFLTRAKPVMLEELFKLEVPEIGEDVI 181
Query: 225 QVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSA 284
++K SRDPGSRAK+AV S D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A
Sbjct: 182 EIKGASRDPGSRAKIAVKSHDKRIDPVGACVGMRGARVQAISNELGGERVDIVLWDDNPA 241
Query: 285 TFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344
FVINA+ PA V+ +V+DED +++ V + L+ AIGR GQNVRLA+QLTGWT++++T
Sbjct: 242 QFVINAMAPAEVSAIVVDEDKHAMDIAVEGKNLAQAIGRNGQNVRLATQLTGWTLNVMTT 301
Query: 345 EEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DE 403
E+ Q + N+ F+ A+ +D+ A LLV EGF+ +EE+A + +SE+ +I+G DE
Sbjct: 302 EDLDKKHQAEDNKVISLFVSALEIDDEFAQLLVDEGFSSLEEIAFIPVSELTAIDGIEDE 361
Query: 404 ETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLA 463
A E+Q RA+ + + ++ +++ + + L ++ G+D I L E GI T+E+LA
Sbjct: 362 NLAEELQTRAKNAITAKALAEEEALKQAHIEDRLLNLEGLDRHIAFKLAEKGITTLEELA 421
Query: 464 GCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
+ DDL E D+ +I+ AR ++ W
Sbjct: 422 EQATDDLSDIEE-----------------LSADKASELIMAAR-QICWFS 453
>gi|71891890|ref|YP_277620.1| transcription elongation factor NusA [Candidatus Blochmannia
pennsylvanicus str. BPEN]
gi|71795996|gb|AAZ40747.1| L factor [Candidatus Blochmannia pennsylvanicus str. BPEN]
Length = 505
Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats.
Identities = 197/520 (37%), Positives = 315/520 (60%), Gaps = 27/520 (5%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ ++ + + ++ A + Y ++RV I+ ++G I+ FR
Sbjct: 2 NKEILAVIEAVSNEKAVPQEKIFEALETALAAATKKKYEQDVEVRVVIDRKSGQINTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVE+V T +I+L AR +P + I V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WVVVEQVTQPTKEITLDAARFENPKVQICDYVEDVIESISFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F ++ G+I++G VK++ ++ +DLGN+ +G+I R+E + REN R GDR++
Sbjct: 122 ERAIIIEQFLNRQGDIVTGIVKKINRDSISIDLGNNAEGMINREEMLPRENFRLGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y VR + +GPQ+L+SRT + +++LF +EVPEI ++ +KA +RDPGSRAK+AV ++
Sbjct: 182 ILYLVRPDFKGPQLLISRTRTEMLIELFRIEVPEIGEELITIKAAARDPGSRAKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV EL E++D+++W + FVINA+ PA V +V+DED
Sbjct: 242 DKRIDPVGACVGMRGARVQAVSGELGGERVDVILWDDNPVQFVINAMSPADVASIVIDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V + L AIGR GQN+RL SQL+GW ++I+T +E RQ + T F+
Sbjct: 302 KHTMDISVEETNLPQAIGRNGQNIRLVSQLSGWELNIMTVDELEKKRQVEICTITNIFIH 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID-IT 423
++N+ E A +L+ GF+ +EELA V ++E+ SI+ FD +T I+ RA+ L+ I
Sbjct: 362 SLNISEQFAKILIDSGFSSLEELAYVPMTELLSIKEFDRKTVEIIRDRAKSALKNFSVIH 421
Query: 424 LQKKIRE-------LGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSEN 476
+K I+E + L +P I+ K+ + L E GI T+E+LA + DL
Sbjct: 422 NEKNIKEDNYTAAVIHPVTGLLRLPNIEYKLALTLVERGISTLEELAEQDISDLSDIE-- 479
Query: 477 KGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
G K+++ +I+ AR + W +
Sbjct: 480 ---------------GLTKEKIGELIMEAR-NICWFNNDN 503
>gi|325267087|ref|ZP_08133756.1| N utilization substance A [Kingella denitrificans ATCC 33394]
gi|324981440|gb|EGC17083.1| N utilization substance A [Kingella denitrificans ATCC 33394]
Length = 499
Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats.
Identities = 185/515 (35%), Positives = 305/515 (59%), Gaps = 28/515 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66
E+L + +A+A EK+++ DVV + ++ AA+ ++ V IN +TG+ R
Sbjct: 4 EILALVEALASEKNVEPDVVFEALEVALGIAAKKKADREHMNLEVRINRDTGEYRTVRKW 63
Query: 67 EVVEEVEN--YTCQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+VE+++ + +++ ++ P I++G + +P FGR A Q+AKQ+I+Q++
Sbjct: 64 LIVEDLDYTYPELEKTIEQIQEEIPGIDINVGDYFEEDIPNEAFGRQAAQTAKQIILQRI 123
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDR 181
R+AER++ F +I+ GTVKRVE ++V+L D +I RD+ + REN R GD+
Sbjct: 124 RDAEREQILNAFLATREDIVVGTVKRVERHGIVVELAPKLDALIPRDQMLPRENYRGGDK 183
Query: 182 VKSYIYDVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
+++ V Q+LLSRT +F+ KLF EVPEI +G++ ++ V+RDPG RAK+A
Sbjct: 184 IRALFLRVEEFNGGRKQILLSRTSGEFLRKLFEQEVPEIADGLLDIREVARDPGQRAKIA 243
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S+D IDP G C+G+RGSRV AV EL E+ID+V+WS D+A FVINAL PA V+++V
Sbjct: 244 VKSNDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSDDTADFVINALSPAQVSRIV 303
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DE+ ++VIV ++QL+LAIGR GQNVRLA++LTG ++I+T +E +++ +
Sbjct: 304 IDEEKNAVDVIVTEDQLALAIGRGGQNVRLAAELTGLQLNIMTVQEAEQRSEEEAAALRE 363
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
F + DE +A LV F +EE+A V +S++ IE D+E A ++ +AR+ L
Sbjct: 364 LFTSQLGADETVAQALVDAEFTSIEEVAFVPMSDLTDIEEIDDELAETLRAKARDVLLQT 423
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
++ ++K+ V+++L + G+D + L + I EDLA S+D+L+ +
Sbjct: 424 ELAAEEKLN--SVADDLRELEGVDDDMLRDLVDANITNREDLAELSIDELIEIT------ 475
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ E +I+ AR W ++
Sbjct: 476 -----------GVSHEEAEQVIMAARAH--WFAQD 497
>gi|157803622|ref|YP_001492171.1| transcription elongation factor NusA [Rickettsia canadensis str.
McKiel]
gi|157784885|gb|ABV73386.1| transcription elongation factor NusA [Rickettsia canadensis str.
McKiel]
Length = 503
Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats.
Identities = 240/511 (46%), Positives = 353/511 (69%), Gaps = 17/511 (3%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
M + +E+LQI ++VA EK I +++++S + ++Q A R YG +I+ +IN +TG+I
Sbjct: 1 MSNIGNVEILQIINSVAREKGISKEILISTVEQAVQVAGRKKYGNEYNIKAQINRKTGEI 60
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
+L R+L++VE VE+Y QIS + A ++P+ IG + + LPP+D RV+ Q+AKQVI Q
Sbjct: 61 NLLRILKIVENVEDYLTQISFEEALIKNPAAKIGDEIYEYLPPIDHARVSAQAAKQVITQ 120
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
+V EAER +QY +FKD+ GEII+G VKR+EYG++IVDL ++ +I++D+ I EN +P D
Sbjct: 121 RVIEAERAKQYHDFKDRKGEIINGIVKRIEYGDIIVDLSRAEAIIKKDQLIKGENFKPND 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
R+K+Y+ DVR+E +GPQ+ LSR Q +V LF +EVPEI+ I+Q+K+V+RDPGS+AK+A
Sbjct: 181 RIKAYVQDVRQETKGPQIFLSRVDNQMLVNLFKLEVPEIFEDIIQIKSVARDPGSKAKIA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN---ALRPAIVT 297
VF+SDSSIDPVG+CVG+RG+RV+AV EL EKIDIV+WS D A F++N L A +T
Sbjct: 241 VFASDSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNALAPLAAAAIT 300
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
K+++DED ++EV+V +E S+AIGRRGQNVRLAS+LTGW IDI+TEE++S R ++F
Sbjct: 301 KILIDEDSHKVEVVVSQENQSIAIGRRGQNVRLASKLTGWNIDIMTEEQESKRRNEEFLT 360
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
T FM+A++V+E+I LL GF VE++A +IS + IEGF+EE AVEI+ RA Y+
Sbjct: 361 STGLFMEALDVEEVIGQLLSVTGFNSVEQIANSEISTLTRIEGFEEELAVEIKNRAINYV 420
Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477
+ + KK+ ELGV +E+ I + ++ + E GIKT+EDL SV++
Sbjct: 421 NLKNEKIIKKLEELGVEQEVIDILELPLELILKFAEYGIKTIEDLGEMSVNE-------- 472
Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYK 508
F S + ++ +I AR
Sbjct: 473 ------FKNLAPSANITDENIKLLIKTARQH 497
>gi|148651972|ref|YP_001279065.1| transcription elongation factor NusA [Psychrobacter sp. PRwf-1]
gi|148571056|gb|ABQ93115.1| NusA antitermination factor [Psychrobacter sp. PRwf-1]
Length = 495
Score = 412 bits (1058), Expect = e-113, Method: Composition-based stats.
Identities = 183/515 (35%), Positives = 296/515 (57%), Gaps = 30/515 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY---GTMSDIRVEINPETGDISLFR 64
E+L + + V+ EK ++ + + + +++ + + +RVEI+ +TGD +R
Sbjct: 4 EILTVVETVSNEKGLNPEDIFEAIEEALVVSTKKRVYTEQPEVAVRVEIDRDTGDYDTYR 63
Query: 65 LLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
VV E+ E CQ+++ + IG + + + ++FGR+A AKQVIIQK+
Sbjct: 64 YWTVVADEDHEMPACQLAISDLDEN--EWSIGDIKEEQIESIEFGRIAATQAKQVIIQKI 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
REAER F+ ++GE++ G VK+ I+DLG++ +G + RD+ + RE LR R
Sbjct: 122 REAERALTADAFEPRIGEMMYGEVKKQTRDGYIIDLGDNAEGYLSRDQMLPREQLRVKSR 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+ + +Y V R+ RG Q+LLSRT P +V L + EVPEI I++++ V+R PG RAK++V
Sbjct: 182 INAILYHVNRDNRGAQLLLSRTSPDMLVALMNKEVPEINEQIIEIRDVARQPGVRAKISV 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
++D IDPVGAC+GMRG+R+QAV +EL E+ID++VWS D A ++I+AL PA V+ ++L
Sbjct: 242 KTNDHRIDPVGACIGMRGTRIQAVQSELDGERIDVIVWSDDPAQYIISALEPADVSSIIL 301
Query: 302 DEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
DED ++I +QL+ AIG +GQNVRLAS+LTG+ ++++ E E +Q + +
Sbjct: 302 DEDAKTADIIFTANDQLARAIGAQGQNVRLASELTGYKLNMMLEAEYLERQQNETKAYLE 361
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
F + VDE +A LV GF +EE+A V + IEG D++ IQ RA+E +
Sbjct: 362 LFYNRLEVDEDLAQALVDVGFTSIEEVAYVPVETFYDIEGLDDDAIEMIQERAKEVVIAD 421
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
++ Q+ ++E S+EL ++ G+ + L + I T++DLA +V DL
Sbjct: 422 ELVKQQNMKE--PSKELLTMDGMTTDWAYKLAQRDIITLDDLAEQAVFDLEDIE------ 473
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G + +I+ AR W +E
Sbjct: 474 -----------GLDEKTAGELIMKARES--WFNEE 495
>gi|319941974|ref|ZP_08016295.1| N utilization substance protein A [Sutterella wadsworthensis
3_1_45B]
gi|319804627|gb|EFW01497.1| N utilization substance protein A [Sutterella wadsworthensis
3_1_45B]
Length = 514
Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats.
Identities = 205/531 (38%), Positives = 321/531 (60%), Gaps = 29/531 (5%)
Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARS--LYGTMSDIRVEINPETGDIS 61
N ++L++ D +A EK++ +DVV V+ ++ A + G +DI V ++ TG+ S
Sbjct: 1 MNSRDMLELVDVLASEKNVAKDVVFGVLELALASAVKRARFPGEDADIVVRVDRTTGEFS 60
Query: 62 LFRLLEVVEEVE---NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDF---GRVAVQSAK 115
R VV + E Q D P + G + PL +D GR Q AK
Sbjct: 61 AVRRWLVVPDEEGLQEPDHQEMYSDIHDEFPDLQPGDYIERPLENVDVDSAGRRFAQDAK 120
Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISREN 175
QVI+Q++R+AER++ EF ++ I++GT+KR++ G+ IV++G + + R++ I REN
Sbjct: 121 QVILQRLRDAEREQILAEFLERHETIVTGTIKRMDKGDAIVEVGRLEARLPRNQMIPREN 180
Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235
+R GDRV++Y+ V +G V+LSRT P+F+ KLF +EVPEI GI+++KA +RDPG+
Sbjct: 181 MRTGDRVRAYVDHVGDTPKGRTVILSRTSPEFIKKLFELEVPEIEEGIIEIKAAARDPGA 240
Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295
RAK+AV S D +DP+G C+GMRGSRV AV TEL E+IDIVVW+ D A FV+ AL PA
Sbjct: 241 RAKIAVASHDQRVDPIGTCIGMRGSRVNAVTTELSGERIDIVVWNADPAQFVVGALEPAK 300
Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355
V +V+ ED +EV+V ++ L++AIGR GQNVRLAS+LTGW I+I+T +E S R +
Sbjct: 301 VRSIVMLEDSHTMEVVVDEDNLAVAIGRGGQNVRLASELTGWQINILTAQEASEKRAAEV 360
Query: 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415
N + FM+++++DE A++L+ EGF+ VEE+A V E+ SIE FD ET E++ RAR
Sbjct: 361 NRIREEFMKSLDIDEAAANVLIDEGFSSVEEIAYVPEKELFSIEAFDHETIEELRQRARN 420
Query: 416 YLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSE 475
L IT ++ +R+ + ++ G+D+ + L G+KT++DL +V++L+ +
Sbjct: 421 KLLADAITREENLRKADPK--MLALEGMDNDLANKLVARGVKTLDDLGDLAVEELVEMT- 477
Query: 476 NKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDAS 526
G +++ + +I+ AR W + AD+ + +
Sbjct: 478 ----------------GLDEERAKKLIMGARAH--WFGDGESADQPAETKA 510
>gi|332976700|gb|EGK13538.1| N utilization substance A [Psychrobacter sp. 1501(2011)]
Length = 495
Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats.
Identities = 182/515 (35%), Positives = 296/515 (57%), Gaps = 30/515 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY---GTMSDIRVEINPETGDISLFR 64
E+L + + V+ EK ++ + + + +++ + + +RVEI+ +TGD +R
Sbjct: 4 EILTVVETVSNEKGLNPEDIFEAIEEALVVSTKKRVYTEQPEVAVRVEIDRDTGDYDTYR 63
Query: 65 LLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
VV E+ E CQ+++ + IG + + + ++FGR+A AKQVIIQK+
Sbjct: 64 YWTVVADEDHEMPACQLAISDLDEN--EWSIGDIKEEQIESIEFGRIAATQAKQVIIQKI 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
REAER F+ ++GE++ G VK+ I+DLG++ +G + RD+ + RE LR R
Sbjct: 122 REAERALTADAFEPRIGEMMYGEVKKQTRDGYIIDLGDNAEGYLSRDQMLPREQLRVKSR 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+ + +Y V R+ RG Q+LLSRT P ++ L + EVPEI I++++ V+R PG RAK++V
Sbjct: 182 INAILYHVNRDNRGAQLLLSRTSPDMLIALMNKEVPEISEQIIEIRDVARQPGVRAKISV 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
++D IDPVGAC+GMRG+R+QAV +EL E+ID++VWS D A ++I+AL PA V+ ++L
Sbjct: 242 KTNDHRIDPVGACIGMRGTRIQAVQSELDGERIDVIVWSDDPAQYIISALEPADVSSIIL 301
Query: 302 DEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
DED ++I +QL+ AIG +GQNVRLAS+LTG+ ++++ E E +Q + +
Sbjct: 302 DEDAKTADIIFTANDQLARAIGAQGQNVRLASELTGYKLNMMLEAEYLERQQNETKAYLE 361
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
F + VDE +A LV GF +EE+A V + IEG D++ IQ RA+E +
Sbjct: 362 LFYNRLEVDEDLAQALVDVGFTSIEEVAYVPVETFYDIEGLDDDAIEMIQERAKEVVIAD 421
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
++ Q+ ++E S+EL ++ G+ + L + I T++DLA +V DL
Sbjct: 422 ELVKQQNMKE--PSKELLTMDGMTTDWAYKLAQRDIITLDDLAEQAVFDLEDIE------ 473
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G + +I+ AR W +E
Sbjct: 474 -----------GLDEKTAGELIMKARES--WFNEE 495
>gi|188577681|ref|YP_001914610.1| transcription elongation factor NusA [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|188522133|gb|ACD60078.1| N utilization substance protein A [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 495
Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats.
Identities = 198/465 (42%), Positives = 310/465 (66%), Gaps = 5/465 (1%)
Query: 14 DAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLLEVVEE- 71
DAVA EK + R+V+ + ++ AA+ Y RV I+ + G +R EVV +
Sbjct: 2 DAVANEKGVPREVIFDAIEAALASAAKKRYPDQDVLARVTIDHKDGTYETYRRWEVVADD 61
Query: 72 --VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
+E+ Q+ L A D +D+G + + + DFGR+A Q+AKQVI+Q+VREAER +
Sbjct: 62 VVMESPDRQVRLMDAIDEADGVDVGDYIEEQIENPDFGRIAAQAAKQVIVQRVREAERQQ 121
Query: 130 QYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYIYD 188
+KD+VGE+I+G VKR E GN+ VDLG + + I +D+ I R+ LRPGDRV+ Y+ +
Sbjct: 122 VVDAWKDRVGELITGVVKRAERGNIFVDLGGNAEAFIPKDKGIPRDVLRPGDRVRGYLAE 181
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++ A +RDPG RAK+AV + D+
Sbjct: 182 VRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEINACARDPGDRAKIAVIAHDART 241
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308
DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++DED +
Sbjct: 242 DPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSIIVDEDKHSM 301
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368
++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T ++ + + + Q FM + V
Sbjct: 302 DLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTADQVAAKSEAEQAAARQLFMDRLEV 361
Query: 369 DEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKI 428
DE I+ +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L + ++ +
Sbjct: 362 DEEISAILVSEGFNTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNAALAEEEGL 421
Query: 429 RELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473
+E+L ++ G+D + VAL E+G++T EDL+ + D+++ +
Sbjct: 422 EGTQPTEDLLALEGMDEETAVALAEHGVRTSEDLSDLAADEIVDF 466
>gi|294788742|ref|ZP_06753983.1| transcription termination/antitermination protein NusA [Simonsiella
muelleri ATCC 29453]
gi|294483224|gb|EFG30910.1| transcription termination/antitermination protein NusA [Simonsiella
muelleri ATCC 29453]
Length = 500
Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats.
Identities = 186/518 (35%), Positives = 305/518 (58%), Gaps = 28/518 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66
E+L +A+A+A EK+++ +VV + ++ AA+ D+ V I+ +TG+ R
Sbjct: 4 EILALAEALASEKNVEPNVVFEALETALGIAAKKKADREHMDLEVRIHRDTGEYRTVRKW 63
Query: 67 EVVEEVEN--YTCQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+VE+++ + +++ ++ P I +G + +P FGR A Q+AKQ+I+QK+
Sbjct: 64 LIVEDLDYTYPELEKTIEQIQEEIPGIDIQVGDYYEEDIPNEAFGRQAAQTAKQIILQKI 123
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDR 181
R+AER++ F +I+ GTVKRVE ++V++ D +I R++ + REN R GD+
Sbjct: 124 RDAEREQILNAFLATREDIVVGTVKRVERHGIVVEIAPKLDALIPREQALPRENYRSGDK 183
Query: 182 VKSYIYDVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
+++ + V QV+LSR+ +F+ KLF EVPEI +G+++++ VSRDPG RAK+A
Sbjct: 184 IRALFWKVEELNGGRKQVMLSRSSGEFLRKLFEQEVPEIADGLLEIREVSRDPGQRAKIA 243
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S+D IDP G C+G+RGSRV AV E+ E+ID+V+WS D+ F+INAL PA V +++
Sbjct: 244 VKSNDQRIDPQGTCIGVRGSRVNAVSNEIGGERIDVVLWSDDAGDFIINALSPANVGRII 303
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DE+ +VIV ++QL+LAIGR GQNVRLA+ LTGW ++I+T +E + +
Sbjct: 304 IDEEKHACDVIVEEDQLALAIGRGGQNVRLAADLTGWQLNIMTVKEAEERNAAEDAAIRE 363
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
FM +N+ E IA++LV EGF +EE+A V I E+ IE + +I+ +AR+ +
Sbjct: 364 IFMSQMNLSEDIANILVQEGFTSIEEVAYVAIDELQEIEDLSADDVDDIRTKARDAVLKA 423
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ ++K+ + ++L ++ G+D + L E I +DLA S+D+L+ +
Sbjct: 424 ALEAEEKLN--QIDQDLKNLDGMDEDMLRDLAEANITHRDDLAELSLDELIEIT------ 475
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518
G KD+ E +I+ AR W E A
Sbjct: 476 -----------GVSKDEAEKVIMAARAH--WFADETNA 500
>gi|32490976|ref|NP_871230.1| transcription elongation factor NusA [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|25166182|dbj|BAC24373.1| nusA [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 494
Score = 408 bits (1050), Expect = e-112, Method: Composition-based stats.
Identities = 182/510 (35%), Positives = 308/510 (60%), Gaps = 20/510 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + + D+R+ I+ ++G FR
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALEKALAAATKKKHEKDIDVRISIDRKSGSFGTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+V+EV T +I+L+ A+ +P + + D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WMIVDEVTQPTKEITLEAAKIENPEAKLKEYIEDKIKSVLFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184
ER +FK++ GEII+G VK++ V +DLG +++ VI +++ + +E RPGDRV+
Sbjct: 122 ERSMIVNKFKERKGEIITGIVKKLNRDGVSLDLGSHAEAVINKEDMLPKEYFRPGDRVRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y + E +G Q+ +SR+ + +++LF +EVPEI ++ +KA +RDPG R+K+AV ++
Sbjct: 182 VLYYINPESKGAQLFISRSKKEMLIELFRIEVPEIGEEVINIKATARDPGLRSKIAVQTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+GACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA VT +V+DED
Sbjct: 242 DKRIDPIGACVGMRGARVQAVSRELGGERIDIVLWDENPAQFVINAMSPADVTSIVIDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V E L+ AIG+ GQN+RLASQL+GW ++++TE++ + + F++
Sbjct: 302 NHTMDIAVNSENLAQAIGKNGQNIRLASQLSGWELNVMTEKDLKNKNKAEEENSMNLFLE 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+N+++ +A LV EGF+ +E++A + I+E+ SI+ +E+TA ++ +A+ L I +
Sbjct: 362 HLNINQELAKNLVKEGFSKIEDIAYIPINELLSIDILNEKTAKLLKEQAQYALTKIALMK 421
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++K + E+L + G++S I E GI T+EDLA +DD+
Sbjct: 422 EEK-ELTSLDEKLIKLSGVNSNIAYKFAEKGIFTLEDLAEQGIDDISDIK---------- 470
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
+ +I+ AR + W
Sbjct: 471 -------DLSNKKAGELIMAAR-NICWFNN 492
>gi|257453568|ref|ZP_05618858.1| transcription elongation factor NusA [Enhydrobacter aerosaccus
SK60]
gi|257449026|gb|EEV23979.1| transcription elongation factor NusA [Enhydrobacter aerosaccus
SK60]
Length = 493
Score = 408 bits (1050), Expect = e-112, Method: Composition-based stats.
Identities = 179/515 (34%), Positives = 289/515 (56%), Gaps = 30/515 (5%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY---GTMSDIRVEINPETGDISL 62
E+L + + V+ EK ++ + + + ++ + + +RV IN +TGD
Sbjct: 2 NREILTVVETVSNEKGLNPEDIFEAIEQALVVSTKKKVYSEQPEVAVRVHINRKTGDYDT 61
Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
+R VV E+ E CQ+++ + IG V + + ++FGR+A AKQVIIQ
Sbjct: 62 YRYWTVVADEDHEMPACQLAISDLDEN--EWKIGDVKEEQIESIEFGRIAATQAKQVIIQ 119
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPG 179
K+REAER F+ ++GE+I+G VK+ I+DLG++ +G + RD+ + RE LR
Sbjct: 120 KIREAERSLVADAFEHRIGEMITGEVKKPARDGYIIDLGDNVEGYLPRDKMLPREQLRIK 179
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
R+ + + V R+ RG Q++LSRT PQ + L EVPEI I++++ V+R PG RAK+
Sbjct: 180 GRINAILEQVNRDNRGAQLVLSRTSPQMLTALMQKEVPEIAEQIIEIRDVARQPGLRAKI 239
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
+V ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D+ ++I+AL PA V ++
Sbjct: 240 SVKTNDHRIDPVGACIGMRGTRIQAVQQELEGERIDVVVWSDDAVQYIISALEPADVDRI 299
Query: 300 VLDEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
+LDED ++I +QL+ AIG +GQNVRLAS+LTG+ ++++ E+E + ++ +
Sbjct: 300 ILDEDTKTADIIFATNDQLARAIGSQGQNVRLASELTGYRLNMMLEDEYNAQQESETKVY 359
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
F + VDE +A LV GF +EE+A V I+G D++ IQ RA+E +
Sbjct: 360 RDLFYTRLEVDEDLAQALVDIGFTSLEEVAYVPAETFYDIDGLDDDAIDAIQERAKEAVI 419
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
++ Q+ I+E S+EL ++ G+ L E + T++DLA ++ D+
Sbjct: 420 ADELVKQQNIKE--PSQELLNLEGMTQAWAYKLAERDVITVDDLAEQAIFDIQDIE---- 473
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
G + +I+ AR W
Sbjct: 474 -------------GLDEKTAGELIMKARES--WFN 493
>gi|323144579|ref|ZP_08079168.1| transcription termination factor NusA [Succinatimonas hippei YIT
12066]
gi|322415655|gb|EFY06400.1| transcription termination factor NusA [Succinatimonas hippei YIT
12066]
Length = 493
Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats.
Identities = 198/513 (38%), Positives = 311/513 (60%), Gaps = 27/513 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E++ IA+A++ E++I RD + + ++ A + Y +RV I+ + G +R
Sbjct: 4 EIIAIAEALSNERAIPRDKIFEALETALATATKKKYPVDIAVRVAIDRKDGSYRTYRRWN 63
Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
V++ +EN ++SL A++ I G VV + +P + F R+ +Q+AKQV+ QKV++
Sbjct: 64 VIDTDGPLENPASEVSLAAAKEDHQGIQAGDVVEEEIPSVKFDRITIQTAKQVLSQKVKD 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVK 183
AER++ E ++ +G +++ TVK+ +I+DLGN+ + V+RRD+ I E GDR+K
Sbjct: 124 AEREQIIAEQREHLGHVVNATVKKQGRDFLILDLGNNAEAVLRRDQIIPHETFGRGDRIK 183
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+ ++R + +GPQ++ SRT +F+ +LF +EVPEI I+++ +V+RDPGSRAK++V S
Sbjct: 184 VLLSEIRADGKGPQIICSRTANEFLSELFRIEVPEIGEDIIEIMSVARDPGSRAKISVRS 243
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
D IDP GAC+GMRG+RV AV EL EKID+V+W + A +V NA+ PA V+K++++E
Sbjct: 244 KDRRIDPRGACIGMRGARVMAVSNELAGEKIDVVLWDENLAQYVNNAMEPAEVSKIIINE 303
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
D I+V V E L+LAIGR GQNVRLASQ+ GW + ++TE E + + + + F+
Sbjct: 304 DSHTIDVAVADENLALAIGRNGQNVRLASQILGWNLKVMTESEMEEGLKAEEGKVIKTFV 363
Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423
A+N+D+ A L + GF +EE+A V I E SIEG D ETA+ +Q AR+ L
Sbjct: 364 DALNIDDEFAEALSSVGFTTLEEIAYVPIEEFESIEGIDRETAIILQENARKALA----E 419
Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483
++K++E G SE L + GIDS + + L GIK E+LA +VDDLL
Sbjct: 420 REEKLKESG-SESLTKLEGIDSDLAMKLVAVGIKDPEELAEQAVDDLLDIE--------- 469
Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
G +++ +I+ AR W + EK
Sbjct: 470 --------GMTEEKAGQIIMAAR-NECWFKDEK 493
>gi|238020478|ref|ZP_04600904.1| hypothetical protein GCWU000324_00360 [Kingella oralis ATCC 51147]
gi|237867458|gb|EEP68464.1| hypothetical protein GCWU000324_00360 [Kingella oralis ATCC 51147]
Length = 500
Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats.
Identities = 192/518 (37%), Positives = 306/518 (59%), Gaps = 28/518 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS-DIRVEINPETGDISLFRLL 66
E+L +A+A+A EK++ ++V + ++ AA+ D+ + I+ ETGD R
Sbjct: 4 EILLLAEALASEKNVSNEIVFEALEVALGIAAKKKADREQMDLEIRIDRETGDYKTIRKW 63
Query: 67 EVVEEVEN--YTCQISLKVARDRDPSIDI--GGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+VE+++ + +++ ++ P I I G + LP FGR A Q+AKQ+I+Q++
Sbjct: 64 LIVEDLDYTYPELEKTIEQIQEEQPEIQISVGDYYEEELPNEAFGRQAAQTAKQIILQRI 123
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDR 181
R+AER++ F + I++GTVKR+E ++V+L D +I R++ + REN R GDR
Sbjct: 124 RDAEREQILNHFLETHENIVTGTVKRMERHGIVVELAPKLDALIPREQMLPRENYRGGDR 183
Query: 182 VKSYIYDVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
+++ + + QVLLSRT P F+ +LF EVPEI +G++++K V+RDPG RAK+A
Sbjct: 184 IRALFWKLEEFNGGRKQVLLSRTAPDFVRELFAQEVPEIADGLLEIKEVARDPGQRAKIA 243
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V + D IDP G C+G+RGSRV AV E+ E+ID+V+WS D+A FVINAL PA V+++V
Sbjct: 244 VLARDQRIDPQGTCIGVRGSRVNAVSNEIGGERIDVVLWSDDTAQFVINALSPAQVSRIV 303
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+D+++ ++VIV ++QL+LAIGR GQNVRLA++LTG ++I+T +E +
Sbjct: 304 IDDELNSVDVIVAEDQLALAIGRGGQNVRLAAELTGLQLNIMTLQEAEERNAAESAAARN 363
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
F++ + V E IA LV EGF VEE+A V SE+ +EGFD E A ++ +ARE +
Sbjct: 364 LFVEQLEVSEEIADALVNEGFESVEEVAYVPASELLEVEGFDAELAESLRAKAREVVLKA 423
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ K+ E + E+L ++ G+D + L E I + +DLA S+ +L+ +
Sbjct: 424 AEEAEAKLNE--IDEDLRTLDGVDEDMLRDLAEANITSRDDLAELSIAELIEIT------ 475
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518
G ++ E I+ AR W +E A
Sbjct: 476 -----------GVSHEEAEKAILAARAH--WFAEEDNA 500
>gi|93004904|ref|YP_579341.1| transcription elongation factor NusA [Psychrobacter cryohalolentis
K5]
gi|92392582|gb|ABE73857.1| NusA antitermination factor [Psychrobacter cryohalolentis K5]
Length = 494
Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats.
Identities = 185/514 (35%), Positives = 292/514 (56%), Gaps = 30/514 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY---GTMSDIRVEINPETGDISLFR 64
E+L + + V+ EK ++ + + + D++ + + ++RV I+ TGD +R
Sbjct: 4 EILTVVETVSNEKGLNPEDIFEAIEDALVVSTKKKVYTDQPEVEVRVSIDRTTGDYDTYR 63
Query: 65 LLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
VV E+ E CQ+++ IG + + + ++FGR+A AKQVIIQK+
Sbjct: 64 YWTVVADEDHEMPACQLAITD--LDQEEWSIGDIKEEQIESIEFGRIAATQAKQVIIQKI 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
REAER+ F+ +VGE++ G VK+ I+DLG++ +G + RD+ + RE LR R
Sbjct: 122 REAERNLVADAFEPRVGEMMYGEVKKQTRDGYIIDLGDNAEGYLSRDQMLPREQLRAKSR 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+ + +Y V RE RG Q+LLSRTHP+ + L EVPEI I++++ V+R PG+RAK+AV
Sbjct: 182 INAILYHVNRENRGAQLLLSRTHPEMLSALMQKEVPEIAEQIIEIRNVARLPGTRAKIAV 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A F+I+AL PA V+ ++L
Sbjct: 242 KTNDHRIDPVGACIGMRGTRIQAVQQELDGERIDVVVWSDDPAQFIISALEPADVSSIIL 301
Query: 302 DEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
DED ++I +QL+ AIG +GQNVRLAS+LTG+ ++++ EEE + + +
Sbjct: 302 DEDTQTADIIFSTNDQLARAIGSQGQNVRLASELTGYKLNMMLEEEYQQRQANESKAFIE 361
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
F + + VD+ +A LV GF +EE+A V + IEG D+E IQ RA+E +
Sbjct: 362 LFYERLEVDKDLAQALVDIGFTSIEEVAYVPVETFYDIEGLDDEAIDMIQERAKEVVIAD 421
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
++ Q+ ++E S+EL + G+ + + I T++DLA +V DL
Sbjct: 422 ELVKQQNMKE--PSQELQDLEGMTVSWAYKMAQKDIITVDDLAEQAVFDLEDIE------ 473
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
+ +I+ AR W +
Sbjct: 474 -----------DLDTETAGKLIMKARES--WFNE 494
>gi|332968911|gb|EGK07958.1| N utilization substance A [Kingella kingae ATCC 23330]
Length = 499
Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats.
Identities = 182/515 (35%), Positives = 309/515 (60%), Gaps = 28/515 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66
E+L +A+A+A EK++D +VV + ++ AA+ ++ V I+ ETG+ R
Sbjct: 4 EILALAEALASEKNVDPNVVFEALETALGIAAKKKADREHMNLEVRIHRETGEYKTVRKW 63
Query: 67 EVVEEVEN--YTCQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+VE+++ + +++ ++ P I++G + +P FGR A Q+AKQ+I+QK+
Sbjct: 64 LIVEDLDYTYPELEKTIEQIQEEQPGIEIEVGDYYEEEIPNEAFGRQAAQTAKQIILQKI 123
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDR 181
R+AER++ F +++ GTVKRVE ++V++ D +I R+ + REN R GD+
Sbjct: 124 RDAEREQILNGFLANREDVVVGTVKRVERHGIVVEIAPKLDALIPREHMLPRENYRGGDK 183
Query: 182 VKSYIYDVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
+++ V QV+LSR +F+ KLF EVPEI +GI++++ V+RDPG RAK+A
Sbjct: 184 IRALFLKVEEFNGGRKQVMLSRASTEFLRKLFEQEVPEIRDGILEIREVARDPGQRAKIA 243
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V ++D IDP G C+G+RGSRV AV E+ E+ID+V+WS D+A FVINAL PA V+++V
Sbjct: 244 VHTNDQRIDPQGTCIGVRGSRVNAVSNEIGGERIDVVLWSDDTAQFVINALSPAQVSRIV 303
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+++++ ++VIV ++QL+LAIGR GQNVRLA++LTG ++I+TE+E ++
Sbjct: 304 INDEMQSVDVIVAEDQLALAIGRGGQNVRLAAELTGLQLNIMTEQEAEQRNAEEELALRD 363
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
FM + DE +A LVA F +EE+A V +S++ ++G D+ TA ++ +ARE L
Sbjct: 364 LFMSQLGADESVALALVAAEFTSIEEVAFVPMSDLTDLDGVDDATAENLRNKAREVLLQT 423
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
++ ++K+ ++++L ++ G+D + L + I +DLA S+D+L+ +
Sbjct: 424 ELEAEEKLN--SIADDLRNLDGLDDDMLRDLVDANITNRDDLAELSIDELIEIT------ 475
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G K++ E +I+ AR W +
Sbjct: 476 -----------GVSKEEAEQVILTARAH--WFADD 497
>gi|71064649|ref|YP_263376.1| transcription elongation factor NusA [Psychrobacter arcticus 273-4]
gi|71037634|gb|AAZ17942.1| NusA antitermination factor [Psychrobacter arcticus 273-4]
Length = 494
Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats.
Identities = 184/514 (35%), Positives = 292/514 (56%), Gaps = 30/514 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY---GTMSDIRVEINPETGDISLFR 64
E+L + + V+ EK ++ + + + D++ + + ++RV I+ TGD +R
Sbjct: 4 EILTVVETVSNEKGLNPEDIFEAIEDALVVSTKKKVYTDQPEVEVRVSIDRATGDYDTYR 63
Query: 65 LLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
VV E+ E CQ+++ IG V + + ++FGR+A AKQVIIQK+
Sbjct: 64 YWTVVADEDHEMPACQLAITD--LDQDEWSIGDVKEEQIESIEFGRIAATQAKQVIIQKI 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
REAER+ F+ +VGE++ G VK+ I+DLG++ +G + RD+ + RE LR R
Sbjct: 122 REAERNLVADAFEPRVGEMMYGEVKKQTRDGYIIDLGDNAEGYLSRDQMLPREQLRAKSR 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+ + +Y V RE RG Q+LLSRTHP+ + L EVPEI I++++ V+R PG+RAK+AV
Sbjct: 182 INAILYHVNRENRGAQLLLSRTHPEMLSALMQKEVPEIAEQIIEIRNVARLPGTRAKIAV 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A F+I++L PA V+ ++L
Sbjct: 242 KTNDHRIDPVGACIGMRGTRIQAVQQELDGERIDVVVWSDDPAQFIISSLEPADVSSIIL 301
Query: 302 DEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
DED ++I +QL+ AIG +GQNVRLAS+LTG+ ++++ EEE + + +
Sbjct: 302 DEDTQSADIIFSTNDQLARAIGSQGQNVRLASELTGYKLNMMLEEEYQQRQANESKAFIE 361
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
F + + VD+ +A LV GF +EE+A V + IEG D++ IQ RA+E +
Sbjct: 362 LFYERLEVDKDLAQALVDIGFTSIEEVAYVPVETFYDIEGLDDDAIDMIQERAKEVVIAD 421
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
++ Q+ ++E S+EL + G+ + + I T++DLA +V DL
Sbjct: 422 ELVKQQNMKE--PSQELQDLEGMTVSWAYKMAQKDIITVDDLAEQAVFDLEDIE------ 473
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
+ +I+ AR W +
Sbjct: 474 -----------DLDTETAGKLIMKARES--WFNE 494
>gi|118602111|ref|YP_903326.1| NusA antitermination factor [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
gi|118567050|gb|ABL01855.1| NusA antitermination factor [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
Length = 491
Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats.
Identities = 187/516 (36%), Positives = 291/516 (56%), Gaps = 32/516 (6%)
Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
+ EL + +A++ EK+I ++ VL + +++ A + D VEIN +TG+ F
Sbjct: 1 MDGKELFLMVEAISNEKNISKEEVLESLEEALAIATKKR--NNIDAYVEINRQTGEFLTF 58
Query: 64 RLLEVVEE----VENYTCQIS--LKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117
R VV + V++ + L V + + V P+ FGR+A Q KQV
Sbjct: 59 RQWMVVADGETFVDDDGTEFDSELHVYAKDASGVAVDDYVRKPIETQKFGRIAAQIVKQV 118
Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENL 176
I+QKVREAER+ ++ ++GE++ TVKRV+ GNV VD G DG+I + + I E++
Sbjct: 119 IVQKVREAEREVIVNDYSSRIGEVVMVTVKRVDRGNVYVDTGGGVDGMIPKFDLIPNESV 178
Query: 177 RPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236
R DR+++YI +V+ RG Q+ LSR+ P+ M++LF MEVPEI G++++ SRDPG R
Sbjct: 179 RKNDRLRAYIKEVKPSVRGAQIFLSRSMPEMMIELFKMEVPEISEGVIEIMGGSRDPGLR 238
Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296
+KLAV + D IDP+G+C+GMRG+RVQAV EL E++DI++W D A FVINA+ PA V
Sbjct: 239 SKLAVRAKDRRIDPIGSCIGMRGARVQAVSNELNAERVDIILWDEDHAQFVINAMAPAQV 298
Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356
+ +++DED +++ V +QL+LAIGR GQN++LAS+LTGW +++++ + + ++
Sbjct: 299 SSIIVDEDKHSMDIAVEDDQLALAIGRGGQNIKLASRLTGWRLNVMSTTQADEKQAQETL 358
Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416
+ + + VD +A +L+ EGF V EL + +IE FD E+Q RA +
Sbjct: 359 KISDKLADQLGVDSEVAGVLIEEGFGSVGELVDADAQVLENIEEFDASMVEELQERASDA 418
Query: 417 LEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSEN 476
+ + SE L S+ G+ + AL E I T++DLA S+DDLL
Sbjct: 419 QLVQA------LGDAEASELLMSVEGVGEDLASALIEADIVTVDDLAELSIDDLLDIQ-- 470
Query: 477 KGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512
+ S+I+ AR GW
Sbjct: 471 ---------------NMDTEIASSVIMIARENEGWF 491
>gi|260550521|ref|ZP_05824731.1| transcription termination/antitermination L factor [Acinetobacter
sp. RUH2624]
gi|260406436|gb|EEW99918.1| transcription termination/antitermination L factor [Acinetobacter
sp. RUH2624]
Length = 494
Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats.
Identities = 194/516 (37%), Positives = 294/516 (56%), Gaps = 35/516 (6%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-----GTMSDIRVEINPETGDISL 62
E+L + + V+ EK + R+ + + ++ A + + + +RVEI+ +TGD
Sbjct: 4 EILTVVETVSNEKGVSREAIFEALEQALVAATKKRFYEGTHAEEAQLRVEIDRKTGDYRT 63
Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPS-IDIGGVVSDPLPPMDFGRVAVQSAKQVII 119
FR VV E+ E CQ ++ DPS IG V + ++FGR+A Q AKQVI+
Sbjct: 64 FRQWTVVADEDHEMPACQDAISD---VDPSKWSIGDVRELEVESIEFGRIAAQIAKQVIV 120
Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRP 178
QK+REAER ++ KVGE+I G VK+ I+DLG++ + + R+E I +E LRP
Sbjct: 121 QKIREAERALVADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREEMIPKEILRP 180
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
RV + +Y+V RE RG Q+LLSR P+ ++ L E+PEI I+++KA +R PG RAK
Sbjct: 181 KQRVNAILYNVNREGRGAQLLLSRAKPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAK 240
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+
Sbjct: 241 IAVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSG 300
Query: 299 VVLDEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
+VLDED ++I +QL+ AIG +GQNVRLAS LTG+ +D++ EEE +Q + +
Sbjct: 301 IVLDEDARSADIIFATSDQLARAIGSQGQNVRLASDLTGYKLDMMLEEEYRARQQNEAQQ 360
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
F+ ++++E +A LV GF +EE+A V IE D E +Q RA+E
Sbjct: 361 YLDMFVSRLDIEEDLAMALVEMGFTSLEEIAYVPAETFDEIE-LDAELVELLQSRAKEAA 419
Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477
+ Q+ I+E S +L ++ G+ S+I +L GI T++DLA + DD+
Sbjct: 420 LTDALKQQENIQE--PSADLLTMEGMTSEIAYSLAARGIITVDDLADQATDDISDIE--- 474
Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
G ++ +I+ AR W
Sbjct: 475 --------------GLDHEKAGQLIMKARES--WFN 494
>gi|262280758|ref|ZP_06058541.1| transcription termination/antitermination L factor [Acinetobacter
calcoaceticus RUH2202]
gi|299771783|ref|YP_003733809.1| transcription elongation factor NusA [Acinetobacter sp. DR1]
gi|262257658|gb|EEY76393.1| transcription termination/antitermination L factor [Acinetobacter
calcoaceticus RUH2202]
gi|298701871|gb|ADI92436.1| transcription elongation factor NusA [Acinetobacter sp. DR1]
Length = 494
Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats.
Identities = 194/516 (37%), Positives = 295/516 (57%), Gaps = 35/516 (6%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-----GTMSDIRVEINPETGDISL 62
E+L + + V+ EK + R+ + + ++ A + + + +RVEI+ +TGD S
Sbjct: 4 EILTVVETVSNEKGVSREAIFEALEQALVAATKKRFYEGTHAEEAQLRVEIDRKTGDYST 63
Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPS-IDIGGVVSDPLPPMDFGRVAVQSAKQVII 119
FR VV E+ E CQ ++ DPS IG V + ++FGR+A Q AKQVI+
Sbjct: 64 FRQWTVVADEDHEMPACQDAISD---LDPSKWSIGDVRELEVESIEFGRIAAQIAKQVIV 120
Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRP 178
QK+REAER ++ KVGE+I G VK+ I+DLG++ + + R+E I +E LRP
Sbjct: 121 QKIREAERALVADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREEMIPKEILRP 180
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
R+ + +Y+V RE RG Q+LLSR P+ ++ L E+PEI I+++KA +R PG RAK
Sbjct: 181 KQRMNAILYNVNREGRGAQLLLSRAKPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAK 240
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+
Sbjct: 241 IAVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSG 300
Query: 299 VVLDEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
+VLDED ++I +QL+ AIG +GQNVRLAS LTG+ +D++ EEE +Q + +
Sbjct: 301 IVLDEDARSADIIFATSDQLARAIGSQGQNVRLASDLTGYKLDMMLEEEYRARQQNEAQQ 360
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
F+ ++++E +A LV GF +EE+A V IE D E +Q RA+E
Sbjct: 361 YLDMFVSRLDIEEDLAMALVEMGFTSLEEIAYVPAETFDEIE-LDAELVELLQSRAKEAA 419
Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477
+ Q+ I+E S +L ++ G+ S+I +L GI T++DLA + DD+
Sbjct: 420 LTDALKQQENIQE--PSADLLTMEGMTSEIAYSLAARGIITVDDLADQATDDISDIE--- 474
Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
G ++ +I+ AR W
Sbjct: 475 --------------GLDHEKAGQLIMKARES--WFN 494
>gi|148244225|ref|YP_001218919.1| transcription termination factor NusA [Candidatus Vesicomyosocius
okutanii HA]
gi|146326052|dbj|BAF61195.1| transcription termination factor NusA [Candidatus Vesicomyosocius
okutanii HA]
Length = 491
Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats.
Identities = 183/516 (35%), Positives = 294/516 (56%), Gaps = 31/516 (6%)
Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
+ EL + +A++ EK+I ++ VL + ++ A + D VEIN +TG+ F
Sbjct: 1 MDGKELFLMVEAISNEKNISKEEVLESLEKALAIATKKR--NNIDAYVEINRQTGEFLTF 58
Query: 64 RLLEVVEE----VENYTCQISLK--VARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117
R VV + V++ + L+ + + + + P+ +FGR+A Q KQV
Sbjct: 59 RQWMVVADGELFVDDDGTEFDLELHIYEKDTDGLVVDDYMRKPIETQEFGRIAAQIVKQV 118
Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR 177
IIQKVREAER+ ++ ++GE+I TVKRV+ GN+ VD+G DG+I + + I E++R
Sbjct: 119 IIQKVREAEREVIVNDYSSRIGEVIMVTVKRVDRGNIYVDMGGVDGMIPKFDLIPNESVR 178
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
DR+++YI +V+ RG Q+ LSR+ + M++LF MEVPEI G++++ SRDPG R+
Sbjct: 179 KNDRLRAYIKEVKSSIRGVQIFLSRSVSEMMIELFKMEVPEISAGVIEIMGGSRDPGLRS 238
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
KLAV + D IDP+G+C+GMRG+RVQAV EL E++DI++W D A FVINA+ PA V+
Sbjct: 239 KLAVRAKDKRIDPIGSCIGMRGARVQAVSNELNAERVDIILWDEDPAQFVINAMAPAEVS 298
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
+++DE+ +++ V EQL+LAIGR GQN++LAS+LTGW +++++ + + ++ +
Sbjct: 299 SIIVDENKHSMDIAVEDEQLALAIGRGGQNIKLASRLTGWKLNVMSTIQADEEQVQEMQK 358
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
+ + VD +A +L+ EGF V+EL + +IE FD E+Q RA +
Sbjct: 359 ISDKLADQLGVDSEVAGVLIEEGFDSVDELVDADTQVLGNIEEFDASMVEELQERASDAQ 418
Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477
+ + SE L S+ G++ + L E I T++DLA S+D+LL
Sbjct: 419 LVQA------LGDAEASEILMSVEGVNEDLASVLIEVDIFTVDDLAELSIDELLDIQ--- 469
Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
+ S+I+ AR GW +
Sbjct: 470 --------------DMDIEIASSIIMTARENEGWFD 491
>gi|293610134|ref|ZP_06692435.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292827366|gb|EFF85730.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|325124307|gb|ADY83830.1| nusA; transcription elongation factor NusA [Acinetobacter
calcoaceticus PHEA-2]
Length = 494
Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats.
Identities = 191/515 (37%), Positives = 291/515 (56%), Gaps = 33/515 (6%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-----GTMSDIRVEINPETGDISL 62
E+L + + V+ EK + R+ + + ++ A + + + +RVEI+ +TGD
Sbjct: 4 EILTVVETVSNEKGVSREAIFEALEQALVAATKKRFYEGTHAEEAQLRVEIDRKTGDYRT 63
Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
FR VV E+ E CQ ++ IG V + ++FGR+A Q AKQVI+Q
Sbjct: 64 FRQWTVVADEDHEMPACQDAISDV--DPAKWSIGDVRELEVESIEFGRIAAQIAKQVIVQ 121
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPG 179
K+REAER ++ KVGE+I G VK+ I+DLG++ + + R+E I +E LRP
Sbjct: 122 KIREAERALVADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREEMIPKEILRPK 181
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
RV + +Y+V RE RG Q+LLSR P+ ++ L E+PEI I+++KA +R PG RAK+
Sbjct: 182 QRVNAILYNVNREGRGAQLLLSRAKPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAKI 241
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ +
Sbjct: 242 AVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSGI 301
Query: 300 VLDEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VLDED ++I +QL+ AIG +GQNVRLAS LTG+ +D++ EEE +Q + +
Sbjct: 302 VLDEDARSADIIFATSDQLARAIGSQGQNVRLASDLTGYKLDMMLEEEYRARQQNEAQQY 361
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
F+ ++++E +A LV GF +EE+A V IE D E +Q RA+E
Sbjct: 362 LDMFVSRLDIEEDLAMALVEMGFTSLEEIAYVPAETFDEIE-LDAELVELLQSRAKEAAL 420
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ Q+ I+E S +L ++ G+ S+I +L GI T++DLA + DD+
Sbjct: 421 TDALKQQENIQE--PSADLLTMEGMTSEIAYSLAARGIITVDDLADQATDDISDIE---- 474
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
G ++ +I+ AR W
Sbjct: 475 -------------GLGHEKAGQLIMKARES--WFN 494
>gi|184156669|ref|YP_001845008.1| transcription elongation factor NusA [Acinetobacter baumannii
ACICU]
gi|332873077|ref|ZP_08441034.1| transcription termination factor NusA [Acinetobacter baumannii
6014059]
gi|183208263|gb|ACC55661.1| Transcription elongation factor [Acinetobacter baumannii ACICU]
gi|322506556|gb|ADX02010.1| nusA [Acinetobacter baumannii 1656-2]
gi|323516435|gb|ADX90816.1| transcription elongation factor NusA [Acinetobacter baumannii
TCDC-AB0715]
gi|332738589|gb|EGJ69459.1| transcription termination factor NusA [Acinetobacter baumannii
6014059]
Length = 494
Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats.
Identities = 192/515 (37%), Positives = 289/515 (56%), Gaps = 33/515 (6%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-----GTMSDIRVEINPETGDISL 62
E+L + + V+ EK + R+ + + ++ A + + + +RVEI+ TGD
Sbjct: 4 EILTVVETVSNEKGVSREAIFEALEQALVAATKKKFYEGTNSEEAQLRVEIDRRTGDYRT 63
Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
FR VV E+ E CQ ++ IG V + ++FGR+A Q AKQVI+Q
Sbjct: 64 FRQWTVVADEDHEMPACQDAISDV--DPAKWSIGDVRELEVESIEFGRIAAQIAKQVIVQ 121
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPG 179
K+REAER ++ KVGE+I G VK+ I+DLG++ + + R+E I +E LRP
Sbjct: 122 KIREAERALVADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREEMIPKEILRPK 181
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
RV + +Y V RE RG Q+LLSR P+ ++ L E+PEI I+++KA +R PG RAK+
Sbjct: 182 QRVNAILYSVNREGRGAQLLLSRAKPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAKI 241
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ +
Sbjct: 242 AVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSGI 301
Query: 300 VLDEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VLDED ++I +QL+ AIG +GQNVRLAS LTG+ +D++ EEE +Q + +
Sbjct: 302 VLDEDAKSADIIFATNDQLARAIGSQGQNVRLASDLTGYKLDMMLEEEYRARQQNEAQQY 361
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
F+ ++++E +A LV GF +EE+A V IE D E +Q RA+E
Sbjct: 362 LDMFVSRLDIEEDLAMALVEMGFTSLEEIAYVPAETFDEIE-LDAELVELLQSRAKEAAL 420
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ Q+ I+E S +L ++ G+ S+I +L GI T++DLA + DD+
Sbjct: 421 TDALKQQENIQE--PSADLLNMEGMTSEIAYSLAARGIITVDDLADQATDDISDIE---- 474
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
G D+ +I+ AR W
Sbjct: 475 -------------GLGHDKAGQLIMKARES--WFN 494
>gi|169634554|ref|YP_001708290.1| transcription elongation factor NusA [Acinetobacter baumannii SDF]
gi|169153346|emb|CAP02459.1| transcription termination/antitermination, L factor (N utilization
substance protein A) [Acinetobacter baumannii]
Length = 494
Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats.
Identities = 190/515 (36%), Positives = 289/515 (56%), Gaps = 33/515 (6%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-----GTMSDIRVEINPETGDISL 62
E+L + + V+ EK + R+ + + ++ A + + + +RVEI+ TGD
Sbjct: 4 EILTVVETVSNEKGVSREAIFEALEQALVAATKKKFYEGTNSEEAQLRVEIDRRTGDYRT 63
Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
FR VV ++ E CQ ++ IG V + ++FGR+A Q AKQVI+Q
Sbjct: 64 FRQWTVVADDDHEMPACQDAISDV--DPAKWSIGDVRELEVESIEFGRIAAQIAKQVIVQ 121
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPG 179
K+REAER ++ KVGE+I G VK+ I+DLG++ + + R+E I +E LRP
Sbjct: 122 KIREAERALVADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREEMIPKEILRPK 181
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
RV + +Y V RE RG Q+LLSR P+ ++ L E+PEI I+++KA +R PG RAK+
Sbjct: 182 QRVNAILYSVNREGRGAQLLLSRAKPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAKI 241
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ +
Sbjct: 242 AVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSGI 301
Query: 300 VLDEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VLDED ++I +QL+ AIG +GQNVRLAS LTG+ +D++ EEE +Q + +
Sbjct: 302 VLDEDAKSADIIFATNDQLARAIGSQGQNVRLASDLTGYKLDMMLEEEYRARQQNEAQQY 361
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
F+ ++++E +A LV GF +EE+A V IE D E +Q RA+E
Sbjct: 362 LDMFVSRLDIEEDLAMALVEMGFTSLEEIAYVPAETFDEIE-LDAELVELLQSRAKEAAL 420
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ Q+ I+E S +L ++ G+ S+I +L GI T++DLA + DD+
Sbjct: 421 TDALKQQENIQE--PSADLLNMEGMTSEIAYSLAARGIITVDDLADQATDDISDIE---- 474
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
G ++ +I+ AR W
Sbjct: 475 -------------GLGHEKAGQLIMKARES--WFN 494
>gi|169797408|ref|YP_001715201.1| transcription elongation factor NusA [Acinetobacter baumannii AYE]
gi|213155778|ref|YP_002317823.1| transcription elongation factor NusA [Acinetobacter baumannii
AB0057]
gi|215484847|ref|YP_002327084.1| Transcription elongation protein nusA [Acinetobacter baumannii
AB307-0294]
gi|239500931|ref|ZP_04660241.1| transcription elongation factor NusA [Acinetobacter baumannii
AB900]
gi|260556300|ref|ZP_05828519.1| transcription termination factor NusA [Acinetobacter baumannii ATCC
19606]
gi|301346315|ref|ZP_07227056.1| transcription elongation factor NusA [Acinetobacter baumannii
AB056]
gi|301513268|ref|ZP_07238505.1| transcription elongation factor NusA [Acinetobacter baumannii
AB058]
gi|301596448|ref|ZP_07241456.1| transcription elongation factor NusA [Acinetobacter baumannii
AB059]
gi|332855373|ref|ZP_08435838.1| transcription termination factor NusA [Acinetobacter baumannii
6013150]
gi|332867631|ref|ZP_08437763.1| transcription termination factor NusA [Acinetobacter baumannii
6013113]
gi|169150335|emb|CAM88232.1| transcription termination/antitermination, L factor (N utilization
substance protein A) [Acinetobacter baumannii AYE]
gi|193076182|gb|ABO10797.2| transcription termination/antitermination L factor [Acinetobacter
baumannii ATCC 17978]
gi|213054938|gb|ACJ39840.1| transcription elongation factor NusA [Acinetobacter baumannii
AB0057]
gi|213986270|gb|ACJ56569.1| Transcription elongation protein nusA [Acinetobacter baumannii
AB307-0294]
gi|260410355|gb|EEX03654.1| transcription termination factor NusA [Acinetobacter baumannii ATCC
19606]
gi|332727505|gb|EGJ58931.1| transcription termination factor NusA [Acinetobacter baumannii
6013150]
gi|332733825|gb|EGJ64972.1| transcription termination factor NusA [Acinetobacter baumannii
6013113]
Length = 494
Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats.
Identities = 191/515 (37%), Positives = 289/515 (56%), Gaps = 33/515 (6%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-----GTMSDIRVEINPETGDISL 62
E+L + + V+ EK + R+ + + ++ A + + + +RVEI+ TGD
Sbjct: 4 EILTVVETVSNEKGVSREAIFEALEQALVAATKKKFYEGTNSEEAQLRVEIDRRTGDYRT 63
Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
FR VV E+ E CQ ++ IG V + ++FGR+A Q AKQVI+Q
Sbjct: 64 FRQWTVVADEDHEMPACQDAISDV--DPAKWSIGDVRELEVESIEFGRIAAQIAKQVIVQ 121
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPG 179
K+REAER ++ KVGE+I G VK+ I+DLG++ + + R+E I +E LRP
Sbjct: 122 KIREAERALVADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREEMIPKEILRPK 181
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
RV + +Y V RE RG Q+LLSR P+ ++ L E+PEI I+++KA +R PG RAK+
Sbjct: 182 QRVNAILYSVNREGRGAQLLLSRAKPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAKI 241
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ +
Sbjct: 242 AVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSGI 301
Query: 300 VLDEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VLDED ++I +QL+ AIG +GQNVRLAS LTG+ +D++ EEE +Q + +
Sbjct: 302 VLDEDAKSADIIFATNDQLARAIGSQGQNVRLASDLTGYKLDMMLEEEYRARQQNEAQQY 361
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
F+ ++++E +A LV GF +EE+A V IE D E +Q RA+E
Sbjct: 362 LDMFVSRLDIEEDLAMALVEMGFTSLEEIAYVPAETFDEIE-LDAELVELLQSRAKEAAL 420
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ Q+ I+E S +L ++ G+ S+I +L GI T++DLA + DD+
Sbjct: 421 TDALKQQENIQE--PSADLLNMEGMTSEIAYSLAARGIITVDDLADQATDDISDIE---- 474
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
G ++ +I+ AR W
Sbjct: 475 -------------GLGHEKAGQLIMKARES--WFN 494
>gi|254700792|ref|ZP_05162620.1| transcription elongation factor NusA [Brucella suis bv. 5 str. 513]
gi|261751301|ref|ZP_05995010.1| transcription elongation protein nusA [Brucella suis bv. 5 str.
513]
gi|261741054|gb|EEY28980.1| transcription elongation protein nusA [Brucella suis bv. 5 str.
513]
Length = 356
Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats.
Identities = 259/354 (73%), Positives = 309/354 (87%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I
Sbjct: 3 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RLLEVVE VE+Y QISL +ARDR+P +G ++D LPPMDFGR+A QSAKQVI+QK
Sbjct: 63 LQRLLEVVENVEDYATQISLFMARDRNPDAQVGDFIADQLPPMDFGRIAAQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR
Sbjct: 123 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV
Sbjct: 183 IRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL
Sbjct: 243 VSRDASIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVL 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355
DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F
Sbjct: 303 DEDAERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEF 356
>gi|119713529|gb|ABL97582.1| transcription elongation factor NusA [uncultured marine bacterium
EB0_35D03]
Length = 491
Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats.
Identities = 189/516 (36%), Positives = 309/516 (59%), Gaps = 31/516 (6%)
Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
+ EL + +A++ EK+I +D V+ + +++ A + D+RVE++ +G+ + F
Sbjct: 1 MDGKELFLMIEAISNEKNITKDDVIESLEEALAVATKKR--NNIDVRVEVDRHSGEFNTF 58
Query: 64 RLLEVVEEVENY------TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117
R +V+E+ E + T L + + +++ V +P+ M+FGR+A Q AKQV
Sbjct: 59 RRWQVIEDGEQFVDDDGNTFDSELHIYQAESGGLEVDAYVEEPMESMEFGRIAAQVAKQV 118
Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR 177
IIQKVREAER F +VGE++ TVKRV+ GNV VD+G DG+I + + I E++R
Sbjct: 119 IIQKVREAERTVVVDNFTQRVGEVVMATVKRVDRGNVFVDMGGIDGMISKYDLIPNESIR 178
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
DR+++YI +V+ RG Q+ LSRT M++LF MEVPEI G++++KA +RDPG R+
Sbjct: 179 KNDRLRAYIKEVKSTPRGAQIFLSRTVNDMMIELFEMEVPEISEGVIEIKAGARDPGLRS 238
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
KLAV + D IDP+G+C+GMRG+RVQAV EL E++DI++W D A FVINA+ PA V+
Sbjct: 239 KLAVKAKDKRIDPIGSCIGMRGARVQAVSNELNGERVDIILWDEDPAQFVINAMAPAEVS 298
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
+V+DE+ G +++ V ++QL+LAIGR GQN++LAS+LTGW +++++ + + K+ +
Sbjct: 299 SIVVDEEKGSMDIAVEEDQLALAIGRGGQNIKLASKLTGWKLNVMSLADADDMQAKELQK 358
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
+ + + VD +A +L+ EG+ ++E+A + ++ IE FD E E+Q RA++
Sbjct: 359 TGEKLAEKLGVDAEVAGVLIDEGYTSLDEIADAESDVLSKIEEFDSEMVGELQERAQDA- 417
Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477
L K + + +E L + G+D + +L + I T+E LA ++ +LL
Sbjct: 418 -----QLVKALNDSEATEILLGVEGVDDALANSLVDAEITTVEALAELAIVELLEIQ--- 469
Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
D ++I+ AR K GW +
Sbjct: 470 --------------DVGNDNASAIIMAAREKEGWFD 491
>gi|262374026|ref|ZP_06067303.1| transcription termination factor NusA [Acinetobacter junii SH205]
gi|262311037|gb|EEY92124.1| transcription termination factor NusA [Acinetobacter junii SH205]
Length = 494
Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats.
Identities = 195/516 (37%), Positives = 296/516 (57%), Gaps = 35/516 (6%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-----GTMSDIRVEINPETGDISL 62
E+L +A+ V+ EK + R+ + + ++ A + + + +RVEI+ +TGD
Sbjct: 4 EILTVAETVSNEKGVSREAIFQALEQALVAATKKKFYEGTHSEEAQLRVEIDRKTGDYRT 63
Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPS-IDIGGVVSDPLPPMDFGRVAVQSAKQVII 119
FR VV E+ E CQ ++ DPS IG V + ++FGR+A Q AKQVI+
Sbjct: 64 FRQWTVVADEDHEMPACQDAISD---VDPSKWSIGDVRELEVESIEFGRIAAQIAKQVIV 120
Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRP 178
QK+REAER ++ KVGE+I G VK+ I+DLG++ + + R+ETI +E LRP
Sbjct: 121 QKIREAERALVADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREETIHKEILRP 180
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
R+ + +Y V RE RG Q+LLSR+ P+ ++ L E+PEI I+++KA +R PG RAK
Sbjct: 181 KQRINAILYSVNREGRGAQLLLSRSRPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAK 240
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+
Sbjct: 241 IAVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSG 300
Query: 299 VVLDEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
+VLDED ++I +QL+ AIG +GQNVRLAS+LTG+ +D++ EEE +Q + +
Sbjct: 301 IVLDEDARSADIIFATNDQLARAIGSQGQNVRLASELTGYKLDMMLEEEYRARQQNEAQQ 360
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
F+ +++DE +A LV GF +EE+A V IE + + +Q RA+E
Sbjct: 361 YLDMFVSRLDIDEDLAMALVEMGFTSLEEIAYVPAETFDEIE-LEADLVELLQSRAKEAA 419
Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477
+ Q+ I+E S EL + G+ ++I AL G+ T++DLA + DD+
Sbjct: 420 LTDALKQQENIQE--PSAELLGMEGMTTEIAYALAARGVITIDDLADQATDDISDIE--- 474
Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
G D+ +I+ AR W
Sbjct: 475 --------------GLGHDKAGQLIMKARES--WFN 494
>gi|255319713|ref|ZP_05360921.1| transcription termination/antitermination, L factor [Acinetobacter
radioresistens SK82]
gi|262380005|ref|ZP_06073160.1| transcription termination factor NusA [Acinetobacter radioresistens
SH164]
gi|255303242|gb|EET82451.1| transcription termination/antitermination, L factor [Acinetobacter
radioresistens SK82]
gi|262298199|gb|EEY86113.1| transcription termination factor NusA [Acinetobacter radioresistens
SH164]
Length = 494
Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats.
Identities = 188/515 (36%), Positives = 291/515 (56%), Gaps = 33/515 (6%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-----GTMSDIRVEINPETGDISL 62
E+L + + V+ EK + R+ + + ++ A + + + +RVEI+ +TGD
Sbjct: 4 EILTVVETVSNEKGVSREAIFEALEQALVAATKKKFYEGTTAEEARLRVEIDRKTGDYRT 63
Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
FR EVV E+ E CQ ++ IG + + ++FGR+A Q AKQVI+Q
Sbjct: 64 FRQWEVVADEDHEMPACQDAISDV--DPAKWSIGDIRELEVESIEFGRIAAQIAKQVIVQ 121
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPG 179
K+REAER ++ KVGE+I G VK+ I+DLG++ + + R+E I++E LRP
Sbjct: 122 KIREAERALIADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREEMIAKEILRPK 181
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
R+ + +Y V RE RG Q+LLSR P+ ++ L E+PEI I+++KA +R PG RAK+
Sbjct: 182 QRINAILYSVNREGRGAQLLLSRAKPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAKI 241
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ +
Sbjct: 242 AVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSGI 301
Query: 300 VLDEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VLDED ++I +QL+ AIG +GQNVRLAS+LTG+ +D++ E+E +Q + +
Sbjct: 302 VLDEDTHSADIIFATSDQLARAIGSQGQNVRLASELTGYKLDMMLEDEYRARQQNEAQQY 361
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
F+ ++++E +A LV GF +EE+A V IE D E +Q RA+E
Sbjct: 362 LDMFVSRLDIEEDLAMALVEMGFTSLEEVAYVPAETFDEIE-LDTELVELLQSRAKEAAL 420
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ Q+ I++ SEEL ++ G+ +I +L G+ T++DLA + DD+
Sbjct: 421 ADALKQQENIQD--PSEELLNMEGMTREIAYSLAARGVVTVDDLADQATDDIADIE---- 474
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
G +I+ AR W
Sbjct: 475 -------------GLDAASAGQLIMKARES--WFN 494
>gi|294649082|ref|ZP_06726525.1| transcription elongation factor NusA [Acinetobacter haemolyticus
ATCC 19194]
gi|292825028|gb|EFF83788.1| transcription elongation factor NusA [Acinetobacter haemolyticus
ATCC 19194]
Length = 494
Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats.
Identities = 192/515 (37%), Positives = 293/515 (56%), Gaps = 33/515 (6%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-----GTMSDIRVEINPETGDISL 62
E+L +A+ V+ EK + R+ + + ++ A + + + +RVEI+ +TGD
Sbjct: 4 EILTVAETVSNEKGVSREAIFQALEQALVAATKKKFYENTHAEEAQLRVEIDRKTGDYRT 63
Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
FR VV E+ E CQ ++ IG V + ++FGR+A Q AKQVI+Q
Sbjct: 64 FRQWTVVADEDHEMPACQDAISDV--DPAQWSIGDVRELEVESIEFGRIAAQIAKQVIVQ 121
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPG 179
K+REAER ++ KVGE+I G VK+ I+DLG++ + + R+ETI +E LRP
Sbjct: 122 KIREAERALVADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREETIHKEILRPK 181
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
R+ + +Y+V RE RG Q+LLSR P+ ++ L E+PEI I+++KA +R PG RAK+
Sbjct: 182 QRINAILYNVNREGRGAQLLLSRARPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAKI 241
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ +
Sbjct: 242 AVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSGI 301
Query: 300 VLDEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VLDED ++I +QL+ AIG +GQNVRLAS+LTG+ +D++ EEE +Q + +
Sbjct: 302 VLDEDARSADIIFATNDQLARAIGSQGQNVRLASELTGYKLDMMLEEEYRARQQNEAQQY 361
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
F+ ++++E +A LV GF +EE+A V IE D + +Q RA+E
Sbjct: 362 LDMFVSRLDIEEDLAMALVEMGFTSLEEIAYVPAETFDEIE-LDADLVELLQSRAKEAAL 420
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ Q+ I+E S EL + G+ ++I AL G+ T++DLA + DD+
Sbjct: 421 TDALKQQENIQE--PSAELLGMDGMTTEIAYALAARGVITVDDLADQATDDISDIE---- 474
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
G D+ +I+ AR W
Sbjct: 475 -------------GLGHDKAGQLIMKARES--WFN 494
>gi|50083628|ref|YP_045138.1| transcription elongation factor NusA [Acinetobacter sp. ADP1]
gi|49529604|emb|CAG67316.1| transcription termination/antitermination, L factor (N utilization
substance protein A) [Acinetobacter sp. ADP1]
Length = 494
Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats.
Identities = 186/515 (36%), Positives = 292/515 (56%), Gaps = 33/515 (6%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-----GTMSDIRVEINPETGDISL 62
E+L + + V+ EK + R+ + + ++ A + + + +RVEI+ +TGD
Sbjct: 4 EILTVVETVSNEKGVSREAIFEALEQALVAATKKKFYEGTNAEEAQLRVEIDRKTGDYRT 63
Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
FR +V E+ E CQ ++ IG V + ++FGR+A Q AKQVI+Q
Sbjct: 64 FRQWTLVADEDHEMPACQDAISDV--DASKWSIGDVRELEVESIEFGRIAAQIAKQVIVQ 121
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPG 179
K+REAER ++ KVGE+I G VK+ I+DLG++ + + R+E I++E LRP
Sbjct: 122 KIREAERALIADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREEMIAKEILRPK 181
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
R+ + +Y V RE RG Q+LLSR P+ ++ L E+PEI I+++KA +R PG RAK+
Sbjct: 182 QRMNAILYSVNREGRGAQLLLSRARPEMLMALMKKEIPEISEEIIEIKAAARQPGVRAKI 241
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ +
Sbjct: 242 AVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSGI 301
Query: 300 VLDEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VLDED ++I +QL+ AIG +GQNVRLAS+LTG+ +D++ EEE +Q + +
Sbjct: 302 VLDEDTRSADIIFATNDQLARAIGSQGQNVRLASELTGYKLDMMLEEEYRARQQNEAQQY 361
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
F+ ++++E +A LV GF +EE+A V IE D+E +Q RA+E
Sbjct: 362 LDMFVTRLDIEEDLAMALVEMGFTSLEEIAYVPPETFDEIE-LDQELVELLQSRAKEAAL 420
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ Q+ ++E V L ++ G+ ++ AL G+ T++DLA + DD+
Sbjct: 421 TDALKQQENVQEPSVE--LLAMAGMTQELAYALAARGVVTVDDLADQATDDISDIE---- 474
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
G +++ +I+ AR W
Sbjct: 475 -------------GLSEEKAGQLIMKARES--WFN 494
>gi|226951828|ref|ZP_03822292.1| transcription elongation factor [Acinetobacter sp. ATCC 27244]
gi|226837368|gb|EEH69751.1| transcription elongation factor [Acinetobacter sp. ATCC 27244]
Length = 494
Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats.
Identities = 193/515 (37%), Positives = 293/515 (56%), Gaps = 33/515 (6%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-----GTMSDIRVEINPETGDISL 62
E+L +A+ V+ EK + R+ + + ++ A + + + +RVEI+ +TGD
Sbjct: 4 EILTVAETVSNEKGVSREAIFQALEQALVAATKKKFYENTHAEEAQLRVEIDRKTGDYRT 63
Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
FR VV E+ E CQ ++ IG V + ++FGR+A Q AKQVI+Q
Sbjct: 64 FRQWTVVADEDHEMPACQDAISDV--DPAQWSIGDVRELEVESIEFGRIAAQIAKQVIVQ 121
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPG 179
K+REAER ++ KVGE+I G VK+ I+DLG++ + + R+ETI +E LRP
Sbjct: 122 KIREAERALVADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREETIHKEILRPK 181
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
R+ + +Y+V RE RG Q+LLSR P+ ++ L E+PEI I+++KA +R PG RAK+
Sbjct: 182 QRINAILYNVNREGRGAQLLLSRARPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAKI 241
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ +
Sbjct: 242 AVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSGI 301
Query: 300 VLDEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
VLDED ++I +QL+ AIG +GQNVRLAS+LTG+ +D++ EEE +Q + E
Sbjct: 302 VLDEDARSADIIFATNDQLARAIGSQGQNVRLASELTGYKLDMMLEEEYRARQQNEAQEY 361
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
F+ ++++E +A LV GF +EE+A V IE D + +Q RA+E
Sbjct: 362 LDMFVSRLDIEEDLAMALVEMGFTSLEEIAYVPAETFDEIE-LDADLVELLQSRAKEAAL 420
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ Q+ I+E S EL + G+ ++I AL G+ T++DLA + DD+
Sbjct: 421 TDALKQQENIQE--PSAELLGMDGMTTEIAYALAARGVITVDDLADQATDDISDIE---- 474
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
G D+ +I+ AR W
Sbjct: 475 -------------GLGHDKAGQLIMKARES--WFN 494
>gi|262370081|ref|ZP_06063408.1| transcription termination/antitermination protein [Acinetobacter
johnsonii SH046]
gi|262315120|gb|EEY96160.1| transcription termination/antitermination protein [Acinetobacter
johnsonii SH046]
Length = 494
Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats.
Identities = 185/515 (35%), Positives = 293/515 (56%), Gaps = 33/515 (6%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-----GTMSDIRVEINPETGDISL 62
E+L + + V+ EK + R+ + + ++ A + + + +RVEI+ +TG+ S
Sbjct: 4 EILTVVETVSNEKGVPREAIFEALEQALVAATKKKFYEGTNSEEAQLRVEIDRKTGEYST 63
Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
FR EVV E+ E CQ ++ IG + +P +DFGR+A Q AKQVI+Q
Sbjct: 64 FRQWEVVADEDHEMPACQDAISDV--DPAQWSIGDIRELEVPSIDFGRIAAQIAKQVIVQ 121
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPG 179
K+REAER ++ KVGE+I G VK+ I+DLG++ + + R+E I++E LRP
Sbjct: 122 KIREAERALIADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREEMIAKEILRPK 181
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
RV + +++V RE RG Q+ LSR P+ ++ L E+PEI I+++KA +R PG RAK+
Sbjct: 182 QRVNAILFNVNREGRGAQLQLSRAKPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAKI 241
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ +
Sbjct: 242 AVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSGI 301
Query: 300 VLDEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
V+DE+ ++I +QL+ AIG +GQNVRLAS+LTG+ ++++ E+E +Q + +
Sbjct: 302 VIDEEERTADIIFATSDQLARAIGSQGQNVRLASELTGYKLNMMLEDEYHARQQNEAQQY 361
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
F+ ++++E +A LV GF +EE+A V IE D E +Q RA+E
Sbjct: 362 LDLFVSRLDIEEDLAMALVEMGFTSLEEIAYVPAETFDEIE-LDAEVVELLQSRAKEVAL 420
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ Q+ I++ S EL ++ G+ +I AL G+ T++DLA + DD+
Sbjct: 421 ADALQQQENIQD--PSAELVAMEGMTQEIAYALAARGVITIDDLADQATDDIADIE---- 474
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
++ +I+ AR W
Sbjct: 475 -------------SLGTEKAGQLIMKARES--WFN 494
>gi|262377017|ref|ZP_06070243.1| transcription termination factor NusA [Acinetobacter lwoffii SH145]
gi|262308055|gb|EEY89192.1| transcription termination factor NusA [Acinetobacter lwoffii SH145]
Length = 494
Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats.
Identities = 189/515 (36%), Positives = 289/515 (56%), Gaps = 33/515 (6%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-----GTMSDIRVEINPETGDISL 62
E+L + + V+ EK + R+ + + ++ A + + + +RVEI+ +TGD
Sbjct: 4 EILTVVETVSNEKGVPREAIFEALEQALVAATKKKFYEGTHSEEARLRVEIDRKTGDYRT 63
Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
FR EVV E+ E CQ ++ IG + + +DFGR+A Q AKQVI+Q
Sbjct: 64 FRQWEVVADEDHEMPACQDAISDV--DPAKWSIGDIRELEVESIDFGRIAAQIAKQVIVQ 121
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPG 179
K+REAER ++ KVGE+I G VK+ I+DLG++ + + R+E I +E LRP
Sbjct: 122 KIREAERALVADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREEMIPKEILRPK 181
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
RV + +++V RE RG Q+ LSR P ++ L E+PEI I+++KA +R PG RAK+
Sbjct: 182 QRVNAILFNVNREGRGAQLQLSRAKPDMLIALMKKEIPEISEEIIEIKAAARQPGVRAKI 241
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ +
Sbjct: 242 AVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSSI 301
Query: 300 VLDEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
V+DED ++I +QL+ AIG +GQNVRLAS+LTG+ +D++ EEE +Q + +
Sbjct: 302 VIDEDARTADIIFATSDQLARAIGSQGQNVRLASELTGYKLDMMLEEEYYARQQNEAQQY 361
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
F+ +++ E +A LV GF +EE+A V IE D E +Q RA+E
Sbjct: 362 LDMFVTRLDIAEDLAMALVEMGFTSLEEIAYVPAETFDEIE-LDAELVELLQSRAKEIAL 420
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ Q+ I+ SEEL ++ G+ +I AL G+ T++DLA + DD+
Sbjct: 421 ADALQQQENIQA--PSEELVAMEGMTVEIAQALAARGVVTVDDLADQATDDIEDIE---- 474
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
G ++ +I+ AR W
Sbjct: 475 -------------GLGAEKAGQLIMKARES--WFN 494
>gi|33519578|ref|NP_878410.1| transcription elongation factor NusA [Candidatus Blochmannia
floridanus]
gi|33517241|emb|CAD83624.1| transcription pausing; L factor [Candidatus Blochmannia floridanus]
Length = 501
Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats.
Identities = 178/513 (34%), Positives = 301/513 (58%), Gaps = 19/513 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + + V+ EK++ ++ + + ++ A R Y DIRV I+ ++G IS FR
Sbjct: 2 NKEILAVVEVVSNEKAVPKEKIFLALEMALAAATRKKYSQDIDIRVSIDRKSGKISTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV +V T +++L+ A+ + I I V D + + F R+ Q+AKQVIIQK+REA
Sbjct: 62 WVVVNQVIQPTREMTLEAAQLENLEIKINDYVEDIVESVTFDRITTQTAKQVIIQKIREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER +F + GEI++G +K++ +V VDLGN+ +G+I+R+E + REN R GDR++
Sbjct: 122 ERMIIIEQFLSRQGEIVTGIIKKISRYSVSVDLGNNAEGIIKREEMLPRENFRVGDRIRG 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+Y V+ + +G + +SRT + +++LF +EVPEI ++ ++A +RDPGSR+K+AV ++
Sbjct: 182 ILYLVKTDSKGSNLFISRTCTEMLIELFRIEVPEIGEELITIQAAARDPGSRSKIAVKTN 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDP+GACVGMRG+RVQAV +EL E++D+++W + FV+NA+ PA + +++DED
Sbjct: 242 DKRIDPIGACVGMRGARVQAVSSELGGERVDVILWDDNPVQFVVNAMIPADIVSMIVDED 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+++ V + L+ IGR GQN+RL SQL W ++++T E RQ + FM+
Sbjct: 302 KHTMDIAVEESNLAQIIGRNGQNIRLISQLIDWELNVMTVVELEKKRQSEDRNILDIFMR 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+N++E A +L+ GF+ +EELA + ISE+ SI FD+E ++ +A++ L+ +
Sbjct: 362 VLNINEESAKVLIDSGFSSLEELAYIPISELLSIGVFDKEEIDLLRFKAKDALKDLSNKD 421
Query: 425 QKKIRELGVS--EELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482
++ EL + + +I + L GI +EDLA + L G
Sbjct: 422 NNDDNSTIMNSVSELLKLSSLKYEIALKLINYGIYKLEDLAEQDIVSLSGI--------- 472
Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
L ++++ +I+ AR + W +
Sbjct: 473 ------KDLNLTEEEIGELIMEAR-NICWFNHD 498
>gi|148284846|ref|YP_001248936.1| transcription elongation factor NusA [Orientia tsutsugamushi str.
Boryong]
gi|146740285|emb|CAM80660.1| N utilization substance protein A, transcription termination factor
[Orientia tsutsugamushi str. Boryong]
Length = 500
Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats.
Identities = 209/509 (41%), Positives = 324/509 (63%), Gaps = 14/509 (2%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
MV+ E+L++ + +A +K I +D ++S++ + IQ ++ YG +I+VEIN ++G+
Sbjct: 1 MVNPINAEVLRVVNYIARDKDISQDALISIVEEMIQLISKKKYGAEHNIKVEINKKSGEC 60
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
L+R+L+VVEE E+ QISL A + +I +G + + LPP++ GRV+ Q+A+ I Q
Sbjct: 61 KLYRVLDVVEETEDMCSQISLNDALQLNANIKVGEQIFETLPPINLGRVSAQTARYFIAQ 120
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
K+ E ER +QYLE KD+VGEII+ V R++ GN+I + G + +I RD+ I E + D
Sbjct: 121 KIAEIERRKQYLEVKDRVGEIITVIVSRIDAGNIIGEFGGVEVIIPRDQLIKSEAYKKND 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
R+K+Y+ V E +GP + LSRT Q +VKL MEVPEIY G + +KAV+RDPGSRAK+A
Sbjct: 181 RIKAYVQRVNEELKGPLMFLSRTDNQMLVKLLEMEVPEIYEGTISIKAVARDPGSRAKVA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
VFS DSSID VG+C+GMRG+R++ + EL E+I+++ W+ D A F INA+ P +TKV+
Sbjct: 241 VFSPDSSIDAVGSCIGMRGNRIKNISNELSGERINVIKWNQDIAGFAINAMSPVQITKVI 300
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DE IE+IV QLS++IGRRGQNVRL S+L GW IDIITEE++S R +F T
Sbjct: 301 IDESRHLIELIVSANQLSISIGRRGQNVRLVSKLLGWNIDIITEEQESSRRTDEFTSATD 360
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
F + + +DE++A LLVAEG +E++A ++ + SI+ + E +E+Q +A +Y+
Sbjct: 361 LFTKNLGIDEMLAQLLVAEGLISIEQIAHADLNVLTSIDRLNSELVLELQQKAIDYVNNQ 420
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ + K+ ELGV +EL I + + L ENGIK +EDL + +
Sbjct: 421 NKLILTKLEELGVEQELLETLEIPLESFITLAENGIKNLEDLEELTFSE----------- 469
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKM 509
F+ + + +++ +I+ + +
Sbjct: 470 ---FNTLVPNNCLSEEEFNYIILTNKKHL 495
>gi|258545583|ref|ZP_05705817.1| N utilization substance A [Cardiobacterium hominis ATCC 15826]
gi|258519283|gb|EEV88142.1| N utilization substance A [Cardiobacterium hominis ATCC 15826]
Length = 496
Score = 392 bits (1006), Expect = e-106, Method: Composition-based stats.
Identities = 205/511 (40%), Positives = 301/511 (58%), Gaps = 26/511 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66
+LL I +AVA EK +DR V++ + ++ A R Y +V INP TG+ FRL
Sbjct: 4 DLLNIIEAVANEKEVDRSVIIEALEAALAAATRKRYPDEEIGAKVVINPRTGEYKSFRLW 63
Query: 67 EVVEE---VENYTCQISLKVARDRDPSI--DIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
VV++ +EN ++ VA P +G V P+ FGR++ Q AKQ+IIQK
Sbjct: 64 TVVDDEAILENPDAEMRESVAAIEFPEAHLQVGDVHEVPIENEPFGRISAQQAKQIIIQK 123
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
+REAER + Y +F + G ++ G V+R E GNVIVD+ ++ I RD I RE+LR GDR
Sbjct: 124 LREAERRKVYDQFIAEEGTLVHGIVRRHERGNVIVDINGAEATILRDGMIPRESLRIGDR 183
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++ Y+ V E RGPQ+ +SR P+ + +LF +EVPEI +GI+++ V+RDPG RAK+AV
Sbjct: 184 IRGYLAKVNLEMRGPQLEVSRVAPEMLKQLFTLEVPEIGSGIIEIMGVARDPGLRAKIAV 243
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
+ D IDPVGACVG+RGSRVQ V+ EL E+IDIV+W D T+V A+ PA +T
Sbjct: 244 RTFDPRIDPVGACVGIRGSRVQGVMNELAGERIDIVLWDEDPETYVRKAMAPAQITNAAA 303
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DE +++ VP+ +L A+GR GQNVRLAS+LTGWTI++++E E ++ + + Q
Sbjct: 304 DEARRVMDIAVPENKLPQAVGRGGQNVRLASELTGWTINVLSEAEFEARQEAVQDAQEQA 363
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
+A++VD+ IA +L+ G+ E +A + E+ IE FDEET + RA +YL
Sbjct: 364 LAEALDVDDEIADILIDAGYTAPEMVAYAERDELLGIEAFDEETVDALMARAADYLLQQA 423
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
+ + E + L ++ GID AL ENG+ T EDLA +VD+L+ ++
Sbjct: 424 FVAEVEPEE-EMQLPLENVEGIDEATIAALQENGLHTQEDLAELAVDELVAYT------- 475
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512
G K+Q ++I+ AR W
Sbjct: 476 ----------GLDKEQASALILKAREP--WF 494
>gi|146329748|ref|YP_001208968.1| transcription termination factor [Dichelobacter nodosus VCS1703A]
gi|146233218|gb|ABQ14196.1| transcription termination factor [Dichelobacter nodosus VCS1703A]
Length = 495
Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats.
Identities = 193/511 (37%), Positives = 300/511 (58%), Gaps = 26/511 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGT-MSDIRVEINPETGDISLFRLL 66
ELL I +AVA EK +DR+V+ + ++ A R +G + RV I+ ++G+ FR+
Sbjct: 4 ELLAIVEAVANEKDVDRNVIFEALEAALAAATRKRHGDKEIETRVSIDRKSGEYETFRVW 63
Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDI--GGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
++V++ +EN +I VA P D+ G + + + FGR++ Q AKQ+IIQK
Sbjct: 64 KIVDDDAILENTDIEIRETVAHIDFPDADLVAGDIYEEKIENEPFGRISAQMAKQIIIQK 123
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
+REAER++ Y +F ++ G ++ G V+R E GN IVDLG +G I R++ I RE LR GDR
Sbjct: 124 LREAEREKIYQQFIEQEGTLVHGIVRRHERGNAIVDLGGVEGTILRNDMIPREPLRSGDR 183
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+ Y+ V RE RGPQ+ +SR P+ +++LF EVPEI +G++++ +RDPG RAK++V
Sbjct: 184 ILGYLEKVNRELRGPQLQISRIAPELLIQLFQKEVPEISSGMIEIMGAARDPGLRAKISV 243
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
+ D IDPVGACVG+RGSRVQ VV EL E+IDIV+W D+ T+V A+ PA+++ +
Sbjct: 244 RTFDPRIDPVGACVGIRGSRVQGVVNELAGERIDIVLWDDDAETYVRKAMAPAVISDTCV 303
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
+E I++ VP+E+L A+GR GQNVRLAS+LTGWTI++++E E + Q + + Q
Sbjct: 304 NEATKTIDIAVPEEKLPQAVGRGGQNVRLASELTGWTINVLSESEFAEKIQATQSAQEQS 363
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
++VDE +A L+A G E +A E+ +I+ FD E ++ RA Y+
Sbjct: 364 LSTILDVDETVATQLIAHGITTPEAVAYTGRDELLTIDAFDAELVDDLLERAANYVMVEA 423
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
++ E + + + G+DS + L GI T EDLA SV++L+
Sbjct: 424 FK-EEDTPEEEMQTSVSVMEGVDSVLAAKLQAAGIHTQEDLAELSVEELITIGNT----- 477
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512
+++ ++I+ AR W
Sbjct: 478 ------------TQNEAAALILKAREP--WF 494
>gi|189183523|ref|YP_001937308.1| transcription elongation factor NusA [Orientia tsutsugamushi str.
Ikeda]
gi|189180294|dbj|BAG40074.1| N utilization substance protein A [Orientia tsutsugamushi str.
Ikeda]
Length = 500
Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats.
Identities = 213/509 (41%), Positives = 327/509 (64%), Gaps = 14/509 (2%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
MV+ E+L++ + +A +K I +D ++S++ + IQ ++ +YG +I+VEIN ++G+
Sbjct: 1 MVNPINAEVLRVVNYIARDKDISQDALISIVEEMIQLISKKIYGAEHNIKVEINKKSGEC 60
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
L+R+L+VVEE E+ QISL A + +I +G + + LPP++ GRV+ Q+A+ I Q
Sbjct: 61 KLYRVLDVVEETEDMYSQISLNDALQLNANIKVGEQIFETLPPINLGRVSAQTARHFIAQ 120
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
K+ E ER +QYLE KD+VGEII+ V R++ GN+I + G + +I RD+ I E + D
Sbjct: 121 KIAEIERRKQYLEVKDRVGEIITVIVSRIDAGNIIGEFGGVEVIIPRDQLIKSEAYKKND 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
RVK+Y+ V E +GP + LSRT Q +VKL MEVPEIY G + +KAV+RDPGSRAK+A
Sbjct: 181 RVKAYVQRVNEELKGPLMFLSRTDNQMLVKLLEMEVPEIYEGTIIIKAVARDPGSRAKVA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
VFS DSSID VG+C+GMRG+R++ + EL E+I+++ WS D A F INA+ P +TKV+
Sbjct: 241 VFSPDSSIDAVGSCIGMRGNRIKNISHELAGERINVIKWSQDIAGFAINAMSPVQITKVI 300
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DE IE+IV QLS+AIGRRGQNVRL S+L GW IDIITEE++S R +F T
Sbjct: 301 IDESRRLIELIVSANQLSIAIGRRGQNVRLVSKLLGWNIDIITEEQESSRRTDEFTSATD 360
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
F + + +DE++A LLVAEGF +E++A ++ + SI+ + E +E+Q +A +Y+
Sbjct: 361 LFTKNLGIDEMLAQLLVAEGFISIEQIAHADLNALTSIDKLNSELVLELQQKAIDYVNNQ 420
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ + K+ ELGV +EL I + + L ENGIK +EDL + +
Sbjct: 421 NKLILTKLEELGVEQELLETLEIPLESFITLAENGIKNLEDLEELTFSE----------- 469
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKM 509
F+ + + +++ +I+ + ++
Sbjct: 470 ---FNTLVQNNCLSEEEFNYIILTNKKRL 495
>gi|296113981|ref|YP_003627919.1| transcription termination/antitermination protein NusA [Moraxella
catarrhalis RH4]
gi|295921675|gb|ADG62026.1| transcription termination/antitermination protein NusA [Moraxella
catarrhalis RH4]
gi|326559307|gb|EGE09734.1| transcription elongation factor NusA [Moraxella catarrhalis 7169]
gi|326564317|gb|EGE14547.1| transcription elongation factor NusA [Moraxella catarrhalis
103P14B1]
gi|326565082|gb|EGE15275.1| transcription elongation factor NusA [Moraxella catarrhalis
46P47B1]
gi|326567250|gb|EGE17370.1| transcription elongation factor NusA [Moraxella catarrhalis
12P80B1]
gi|326568244|gb|EGE18326.1| transcription elongation factor NusA [Moraxella catarrhalis BC8]
gi|326569945|gb|EGE19992.1| transcription elongation factor NusA [Moraxella catarrhalis BC1]
gi|326570023|gb|EGE20069.1| transcription elongation factor NusA [Moraxella catarrhalis BC7]
gi|326572881|gb|EGE22866.1| transcription elongation factor NusA [Moraxella catarrhalis CO72]
gi|326573671|gb|EGE23629.1| transcription elongation factor NusA [Moraxella catarrhalis O35E]
gi|326574706|gb|EGE24642.1| transcription elongation factor NusA [Moraxella catarrhalis
101P30B1]
Length = 493
Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats.
Identities = 185/513 (36%), Positives = 287/513 (55%), Gaps = 30/513 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY---GTMSDIRVEINPETGDISLFR 64
E+L + + V+ EK ++ + + + ++ + + IRV I+ +TG+ FR
Sbjct: 4 EILTVVETVSNEKGLNPEDIFEAIEQALVVSTKKKVYTEQPEVAIRVHIDRKTGNYDTFR 63
Query: 65 LLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
VV E+ E CQ+++ + IG V + + ++FGR+A AKQVIIQK+
Sbjct: 64 YWTVVADEDHEMPACQLAISDLDEN--EWQIGDVKEEQIESIEFGRIAATQAKQVIIQKI 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181
REAER F+ ++G++ISG +K+ IVDLG +G + +D+T+ RE LR R
Sbjct: 122 REAERALVADAFESRIGDLISGEIKKQSRDAYIVDLGEGGEGYLAKDQTLPRETLRVKSR 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V + + V R+ R PQ++LSRT + ++ L + EVPEI I++++ V+R PG RAK++V
Sbjct: 182 VSAILSQVNRDGRSPQLMLSRTSNEMLIALMNKEVPEISEQIIEIRDVARLPGLRAKISV 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
++D IDPVGAC+GMRG+R+QAV EL E+ID++VW+ D A ++I+AL PA V +VL
Sbjct: 242 KTNDHRIDPVGACIGMRGTRIQAVQQELDGERIDVIVWNEDPAQYIISALEPADVIGLVL 301
Query: 302 DEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
DED EVI +QL+ AIG +GQNVRLAS+LTG+ +++I E E S + +
Sbjct: 302 DEDAKTAEVIFATNDQLARAIGSQGQNVRLASELTGYKLNMILESEYSERQASENQAVID 361
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
F + + +D +A +L GFAD+E +A + E I+G D+ET IQ RA+E +
Sbjct: 362 LFYERLELDRDLAEVLAEVGFADIETVAYAPVEEFYEIDGLDDETITAIQERAKEVIISD 421
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+I Q+ I+E S EL ++ + I L E I T++DLA ++ D+
Sbjct: 422 EIAKQQNIKE--PSAELLALEDMTPAIAYKLAERDIITLDDLAEQAIFDIEDIE------ 473
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
G I+ AR W E
Sbjct: 474 -----------GLNSQSAGKFIMAARQS--WFE 493
>gi|88657698|ref|YP_507374.1| transcription elongation factor NusA [Ehrlichia chaffeensis str.
Arkansas]
gi|88599155|gb|ABD44624.1| N utilization substance protein A [Ehrlichia chaffeensis str.
Arkansas]
Length = 517
Score = 388 bits (997), Expect = e-105, Method: Composition-based stats.
Identities = 211/524 (40%), Positives = 340/524 (64%), Gaps = 32/524 (6%)
Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64
+ LEL+++A +A +K ++ DV++ + ++IQ +RS YG I+V ++ +TG ++ +R
Sbjct: 8 DNLELIRVAKDIADQKGLNLDVIIRAIEEAIQLTSRSRYG-NCKIKVTVDKKTGVVATYR 66
Query: 65 LLEVVEE------VENYTCQI-----------SLKVARDRDPSIDIGGVVSDPLPPMDFG 107
+ V+ E +I +L A+ D ++++G ++ +PLP +D
Sbjct: 67 QVLVINNNGDISVPEGKENEIDFSDVSKYKLITLAEAKQIDKNVEVGDIMLEPLPVIDLD 126
Query: 108 RVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRR 167
+ + AKQ I Q + ER +QY +FKD+VG+I+ GT KR+EY NVIVDL ++G +
Sbjct: 127 YSSAKIAKQKIAQVIISEERKKQYEDFKDRVGDIVYGTAKRIEYNNVIVDLNGNEGYLSA 186
Query: 168 DETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227
I E R GDRVK++I DVR+E GPQ+ LSR + FM +LF E+PEIY+GIV +K
Sbjct: 187 SNLIKGEVFRVGDRVKAHIEDVRKENSGPQIFLSRINKGFMEQLFKQEIPEIYDGIVTIK 246
Query: 228 AVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFV 287
A++RDPGSR+K+AVFSSD +IDPVGACVG RG R+Q +++EL EKID++++SP+ A F+
Sbjct: 247 AIARDPGSRSKVAVFSSDKNIDPVGACVGARGVRIQGIISELHGEKIDVILYSPELAKFI 306
Query: 288 INALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347
+NA+ PA V KV++DED ++E+I+P+ QLSLAIGR GQN+RLAS+L GW I++I +E +
Sbjct: 307 VNAIAPAEVLKVIIDEDKEKVELIIPENQLSLAIGRYGQNIRLASELVGWKINVIGDETE 366
Query: 348 SINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV 407
S + K+ + ++ F++ ++V+EII LL EGF +E++ +S+I++I+GF+EE A
Sbjct: 367 SSRKAKELSAGSKIFVEGLDVEEIIGQLLFTEGFVSIEDIDQASVSDISAIDGFNEEIAE 426
Query: 408 EIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSV 467
E++ RA +YL D +++ + L V +++ +P + +AL +NGI ++ED+AG
Sbjct: 427 ELKSRAADYLVRKDAEMKQILDNLSVDKDVTMLPFLRPSDIIALSKNGINSLEDIAGLCT 486
Query: 468 DDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGW 511
D+ + + KDQV+S+I+ +R K+GW
Sbjct: 487 DEFFDI--------------IPDIALTKDQVDSVILESRKKIGW 516
>gi|269958718|ref|YP_003328505.1| transcription elongation factor [Anaplasma centrale str. Israel]
gi|269848547|gb|ACZ49191.1| transcription elongation factor [Anaplasma centrale str. Israel]
Length = 524
Score = 388 bits (996), Expect = e-105, Method: Composition-based stats.
Identities = 215/523 (41%), Positives = 336/523 (64%), Gaps = 30/523 (5%)
Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64
+ LEL+++A VA +K ++ ++V+ + +++ +RS YG I+ I+ +TG IS+ R
Sbjct: 17 DNLELIRVARDVAEQKGLNLEMVVDAIEQALELVSRSKYG-DCKIKASIDRKTGVISISR 75
Query: 65 LLEVVEEVENYTCQ--------------ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVA 110
VV + ++ + I + A + +G ++ +PLPP+D +
Sbjct: 76 QALVVNDDMSFDGEQYGIPSGEVNKYKLIKISDAVADGKDVKVGDILLEPLPPVDVDYNS 135
Query: 111 VQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDET 170
+ AKQ + Q + ER RQY EFKD+VG+++ G VKRVEY NV+VDL S+G + T
Sbjct: 136 AKVAKQKVAQLILIQERKRQYEEFKDRVGDLVYGVVKRVEYNNVVVDLNGSEGYLPVYNT 195
Query: 171 ISRENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAV 229
I E RP DRVK+++ +VR+E+ GPQ+ LSR +FM LF E+PE+Y+GIV +KA+
Sbjct: 196 IRGEVFRPNDRVKAHVEEVRQEELSGPQIFLSRVSKRFMELLFKQEIPEVYDGIVSIKAL 255
Query: 230 SRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN 289
+RDPGSR+K+AVFSSD ++DPVGAC+G RG R+Q +V+EL EKID+V++S D A FV++
Sbjct: 256 ARDPGSRSKVAVFSSDKNVDPVGACIGARGVRIQNIVSELHGEKIDVVLYSSDLAKFVVS 315
Query: 290 ALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
A+ PA V KV++DEDV +IE++VP+ Q+SLAIGR GQN+RLAS+L GW ID+I +E +S
Sbjct: 316 AIAPAEVVKVIIDEDVEKIELVVPENQVSLAIGRYGQNIRLASELVGWEIDVIGDETEST 375
Query: 350 NRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409
+ K+ + + F+ ++V+EII LLV+EGF+ +E+L V ++EI +I+GF+EE AVE+
Sbjct: 376 RKAKELSSGAKVFVDGLDVEEIIGQLLVSEGFSTIEDLDKVDVAEITAIDGFNEEIAVEL 435
Query: 410 QGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDD 469
+ RA EYL + ++ + VSEE+ +P ++ + V L E GI+ +ED+A D+
Sbjct: 436 KKRAAEYLVRRREEALEILKSMSVSEEVLELPYLEIEDVVKLCEGGIRNVEDIASMCTDE 495
Query: 470 LLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512
+ K+QV+S+I+ +R +MGW+
Sbjct: 496 FYD--------------TVPKARLSKEQVDSIILESRRRMGWV 524
>gi|260893511|ref|YP_003239608.1| NusA antitermination factor [Ammonifex degensii KC4]
gi|260865652|gb|ACX52758.1| NusA antitermination factor [Ammonifex degensii KC4]
Length = 365
Score = 387 bits (995), Expect = e-105, Method: Composition-based stats.
Identities = 164/354 (46%), Positives = 234/354 (66%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E LQ + E+ + +V+LSV+ ++ A R +GT + RVEI+ TG+ +
Sbjct: 2 NAEFLQALRDLERERGLKTEVLLSVIEAALLSAYRRNFGTAQNARVEIDRTTGECRVLAQ 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVEEV++ +ISL AR+ DP +G VV + P DFGR+A Q+AKQV++Q+++EA
Sbjct: 62 RTVVEEVKDPRTEISLAEAREIDPRYQVGDVVEIEVTPRDFGRIAAQTAKQVVMQRIKEA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER+ Y F + G+I++GTV R + NV +DLG ++ ++ E I E R GDRV++Y
Sbjct: 122 ERNMIYEAFAGREGDIVTGTVHRADKQNVYLDLGKTEAILPAAEQIPGERYRQGDRVRAY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I +VRR +GPQ++LSRTHP F+ +L +EVPE+ G V++K + R+PGSR+K+AV+S D
Sbjct: 182 ILEVRRTPKGPQIILSRTHPGFLRRLLELEVPELQEGTVELKNLVREPGSRSKVAVYSRD 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DPVGACVG RGSR+QAVV ELR EKID+V W PD + F+ AL PA VT V + E+
Sbjct: 242 PHVDPVGACVGPRGSRIQAVVNELRGEKIDVVRWDPDPSRFIAEALSPAKVTAVEIWEEE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
VIVP QLSLAIG+ GQN RLA++LTGW IDI +E + + +++
Sbjct: 302 KIARVIVPDNQLSLAIGKEGQNARLAAKLTGWKIDIKSESQMAEIYAREYASYY 355
>gi|167630355|ref|YP_001680854.1| transcription termination factor nusa [Heliobacterium modesticaldum
Ice1]
gi|167593095|gb|ABZ84843.1| transcription termination factor nusa [Heliobacterium modesticaldum
Ice1]
Length = 442
Score = 387 bits (995), Expect = e-105, Method: Composition-based stats.
Identities = 161/430 (37%), Positives = 254/430 (59%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+E L + EK I ++++L + ++ A + +G++ ++RV I+ TG+ ++
Sbjct: 2 NVEFLTALKDLEREKGISKEILLEAIEAALISAYKKNFGSLQNVRVHIDRSTGEFKVYSR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+VEE+ + ++ L A+ DP+ + V+ + P +FGR+A Q+AKQV++Q++REA
Sbjct: 62 KLIVEELTDPRVEVLLADAQRIDPNYQVNDVIETEVTPREFGRIAAQTAKQVVVQRIREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y EF ++ G+I++G V+R E NV VDLG + ++ E ++ E R DR+K+Y
Sbjct: 122 ERGMIYEEFSNREGDIVTGIVQRTENKNVFVDLGKVEALLAPSEQMNGETYRHNDRIKAY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I +V++ +GPQVL+SRTHP + +LF +EVPEI++G V++KA SR+ G+R+K+AV+S D
Sbjct: 182 IVEVKKTTKGPQVLISRTHPGLLKRLFELEVPEIHDGTVELKAASREAGARSKIAVYSKD 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
++DPVGACVG +G RVQAVV EL+ EKIDIV W+PD A FV NAL PA V V + E+
Sbjct: 242 ENVDPVGACVGPKGMRVQAVVNELKGEKIDIVKWNPDPAKFVANALSPAKVVSVDIIEEE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + + + + +
Sbjct: 302 KVARVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQVKTAKAAFIDHDENYDAEY 361
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425
+ DE + +E A + + +D + E D +
Sbjct: 362 EDFDEQVGEDYNEAYDDAYDEEAYDDAYDGTYDDNYDCYEEYPEEYEDGYEEEADDAKIP 421
Query: 426 KKIRELGVSE 435
+ EL +
Sbjct: 422 QDFPELTNDK 431
>gi|222475232|ref|YP_002563648.1| transcription termination factor nusA (nusA) [Anaplasma marginale
str. Florida]
gi|255003215|ref|ZP_05278179.1| transcription elongation factor NusA [Anaplasma marginale str.
Puerto Rico]
gi|255004343|ref|ZP_05279144.1| transcription elongation factor NusA [Anaplasma marginale str.
Virginia]
gi|222419369|gb|ACM49392.1| transcription termination factor nusA (nusA) [Anaplasma marginale
str. Florida]
Length = 515
Score = 386 bits (992), Expect = e-105, Method: Composition-based stats.
Identities = 213/523 (40%), Positives = 337/523 (64%), Gaps = 30/523 (5%)
Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64
+ LEL+++A VA +K ++ ++V+ + +++ +RS YG I+ I+ +TG +S+ R
Sbjct: 8 DNLELIRVARDVAEQKGLNLEMVVDAIEQALELVSRSKYG-DCKIKASIDRKTGVVSISR 66
Query: 65 LLEVVEEVENYTCQ--------------ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVA 110
VV + ++ + + + A + +G ++ +PLPP+D +
Sbjct: 67 QALVVNDDMSFDSEQYGIPPGEVSKYKLVKVSDAVADGKDVKVGDILFEPLPPVDVDYNS 126
Query: 111 VQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDET 170
+ A+Q + Q + ER RQY EFKD+VG+++ G VKRVEY NV+VDL S+G + T
Sbjct: 127 AKVARQKVAQLIMIQERKRQYEEFKDRVGDLVYGVVKRVEYNNVVVDLNGSEGYLPVYNT 186
Query: 171 ISRENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAV 229
I E RP DRVK+++ +VR+E+ GPQ+ LSR +FM LF E+PE+Y+GIV +KA+
Sbjct: 187 IRGEVFRPNDRVKAHVEEVRQEELSGPQIFLSRVSKRFMELLFKQEIPEVYDGIVSIKAL 246
Query: 230 SRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN 289
+RDPGSR+K+AVFSSD ++DPVGAC+G RG R+Q +V+EL EKID+V++S D A FV++
Sbjct: 247 ARDPGSRSKVAVFSSDKNVDPVGACIGARGVRIQNIVSELHGEKIDVVLYSSDLAKFVVS 306
Query: 290 ALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
A+ PA V KV++DEDV +IE++VP+ Q+SLAIGR GQN+RLAS+L GW ID+I +E +S
Sbjct: 307 AIAPAEVVKVIIDEDVEKIELVVPENQVSLAIGRYGQNIRLASELVGWEIDVIGDETEST 366
Query: 350 NRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409
+ K+ + + F+ ++V+EII LLV+EGF+ +E+L V ++EI +I+GF+EE AVE+
Sbjct: 367 RKAKELSSGAKVFVDGLDVEEIIGQLLVSEGFSTIEDLDKVDVAEITAIDGFNEEIAVEL 426
Query: 410 QGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDD 469
+ RA EYL + ++ + VSEE+ +P ++ + V L E GI+++ED+A D+
Sbjct: 427 KKRAAEYLTRRREEALETLKNMSVSEEVLELPYLEIEDVVKLCEGGIRSVEDIASMCTDE 486
Query: 470 LLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512
+ K+QV+S+I+ +R +MGWI
Sbjct: 487 FYDM--------------VPKARLSKEQVDSIILESRKRMGWI 515
>gi|56416867|ref|YP_153941.1| transcription elongation factor NusA [Anaplasma marginale str. St.
Maries]
gi|56388099|gb|AAV86686.1| transcription termination factor A [Anaplasma marginale str. St.
Maries]
Length = 515
Score = 386 bits (992), Expect = e-105, Method: Composition-based stats.
Identities = 212/523 (40%), Positives = 337/523 (64%), Gaps = 30/523 (5%)
Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64
+ LEL+++A VA +K ++ ++V+ + +++ +RS YG I+ I+ +TG +S+ R
Sbjct: 8 DNLELIRVARDVAEQKGLNLEMVVDAIEQALELVSRSKYG-DCKIKASIDRKTGVVSISR 66
Query: 65 LLEVVEEVENYTCQ--------------ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVA 110
VV + ++ + + + A + +G ++ +PLPP+D +
Sbjct: 67 QALVVNDDMSFDSEQYGIPPGEVSKYKLVKVSDAVADGKDVKVGDILFEPLPPVDVDYNS 126
Query: 111 VQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDET 170
+ A+Q + Q + ER RQY EFKD+VG+++ G VKRVEY NV+VDL S+G + T
Sbjct: 127 AKVARQKVAQLIMIQERKRQYEEFKDRVGDLVYGVVKRVEYNNVVVDLNGSEGYLPVYNT 186
Query: 171 ISRENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAV 229
I E RP DRVK+++ +VR+E+ GPQ+ LSR +FM LF E+PE+Y+GIV +KA+
Sbjct: 187 IRGEVFRPNDRVKAHVEEVRQEELSGPQIFLSRVSKRFMELLFKQEIPEVYDGIVSIKAL 246
Query: 230 SRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN 289
+RDPGSR+K+AVFSSD ++DPVGAC+G RG R+Q +V+EL EKID+V++S D A FV++
Sbjct: 247 ARDPGSRSKVAVFSSDKNVDPVGACIGARGVRIQNIVSELHGEKIDVVLYSSDLAKFVVS 306
Query: 290 ALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
A+ PA V KV++DEDV +IE++VP+ Q+SLAIGR GQN+RLAS+L GW ID+I +E +S
Sbjct: 307 AIAPAEVVKVIIDEDVEKIELVVPENQVSLAIGRYGQNIRLASELVGWEIDVIGDETEST 366
Query: 350 NRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409
+ K+ + + F+ ++V+EII LLV+EGF+ +E+L V ++EI +I+GF+EE AVE+
Sbjct: 367 RKAKELSSGAKVFVDGLDVEEIIGQLLVSEGFSTIEDLDKVDVAEITAIDGFNEEIAVEL 426
Query: 410 QGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDD 469
+ RA EYL + ++ + VSEE+ +P ++ + V L E GI+++ED+A D+
Sbjct: 427 KKRAAEYLTRRREEALETLKNMSVSEEVLELPYLEIEDVVKLCEGGIRSVEDIASMCTDE 486
Query: 470 LLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512
+ K+QV+S+I+ +R ++GWI
Sbjct: 487 FYDM--------------VPKARLSKEQVDSIILESRKRVGWI 515
>gi|213425433|ref|ZP_03358183.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
Length = 431
Score = 385 bits (990), Expect = e-105, Method: Composition-based stats.
Identities = 179/447 (40%), Positives = 278/447 (62%), Gaps = 24/447 (5%)
Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134
T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREAER +F
Sbjct: 2 PTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQF 61
Query: 135 KDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPGDRVKSYIYD 188
+D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPGDR++ +Y
Sbjct: 62 RDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPGDRIRGVLYA 121
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++D I
Sbjct: 122 VRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRI 181
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308
DPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED +
Sbjct: 182 DPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTM 241
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368
++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + + F + +++
Sbjct: 242 DIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIEIFTKYLDI 301
Query: 369 DEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKI 428
DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L + + +
Sbjct: 302 DEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALATLAQDQEASL 361
Query: 429 RELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFL 488
+ +++L ++ G+D + L G+ T+EDLA +DDL
Sbjct: 362 GDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIE-------------- 407
Query: 489 SSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ +I+ AR + W E
Sbjct: 408 ---GLTDEKAGELIMAAR-NICWFGDE 430
>gi|304316865|ref|YP_003852010.1| NusA antitermination factor [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778367|gb|ADL68926.1| NusA antitermination factor [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 345
Score = 385 bits (988), Expect = e-104, Method: Composition-based stats.
Identities = 154/344 (44%), Positives = 227/344 (65%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E ++ D + +K I +D + + ++ A + YGT +++V+++ ETGD+ ++
Sbjct: 2 NSEFIEALDQICKDKGIPKDTMFEAIEAALVSAYKKNYGTAQNVKVKMDRETGDVKVYAQ 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVE V N +ISL+ A+ +G VV + P FGR+A Q+AKQV++Q++REA
Sbjct: 62 KTVVENVYNDLFEISLEDAQKLSKKYQVGDVVDIEVTPKSFGRIAAQNAKQVVVQRIREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y +F K EI++G V+R+E NV+VDLG ++ + +E I E GDR+K Y
Sbjct: 122 ERGIVYEDFLSKESEIVTGIVERIERKNVLVDLGKAEATLTPNEQIPNETYNHGDRIKVY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I +V++ +GPQ+L+SR+HP + +LF MEVPE+ GIV+++++SR+PGSR K+AV++ D
Sbjct: 182 IVEVKKTTKGPQILISRSHPGLVKRLFEMEVPELQQGIVEIRSISREPGSRTKMAVYTKD 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
++DPVG+CVG +G+RVQAVV EL+ EKIDIV WS FV NAL PA V + +DE
Sbjct: 242 ENVDPVGSCVGYKGARVQAVVNELKGEKIDIVKWSSKPQEFVTNALSPAKVLSIDIDEKE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
V+VP QLSLAIG+ GQNVRLA++LTGW IDI +E
Sbjct: 302 KIARVVVPDYQLSLAIGKEGQNVRLAAKLTGWKIDITSESASKS 345
>gi|56419795|ref|YP_147113.1| transcription elongation factor NusA [Geobacillus kaustophilus
HTA426]
gi|56379637|dbj|BAD75545.1| transcription termination-antitermination factor [Geobacillus
kaustophilus HTA426]
Length = 383
Score = 384 bits (987), Expect = e-104, Method: Composition-based stats.
Identities = 161/370 (43%), Positives = 233/370 (62%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+LL+ + EK I ++VV+ + +I A + +G ++RV++N +TG I +F
Sbjct: 2 NTQLLEALADLMREKGISKEVVMEAIEAAIVSAYKRNFGQAQNVRVDLNMDTGTIRVFAR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+VVEEV + +ISL+ A+ +P+ IG VV + P DFGR+A Q+AKQV+ Q+VREA
Sbjct: 62 KDVVEEVADPRLEISLEDAQRINPNYQIGDVVELEVTPRDFGRIAAQTAKQVVTQRVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y EF D+ +I++G V+RV+ V V LG ++ ++ +E + E +P DR+K Y
Sbjct: 122 ERSIIYAEFVDREEDIMTGIVQRVDPRFVYVSLGKAEALLPANEQMPNETYKPHDRLKVY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+++R+ G R+K++V S +
Sbjct: 182 ITKVEKTTKGPQIFVSRTHPGLLKRLFELEVPEIYDGTVEIKSIAREAGDRSKISVHSDN 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DPVGACVG RG RVQA+V EL EKIDIV WS D FV NAL PA V +V+++E+
Sbjct: 242 PEVDPVGACVGPRGQRVQAIVDELNGEKIDIVRWSADPVEFVANALSPAKVLRVIVNEEQ 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
VIVP QLSLAIG+RGQN RLA++LTGW IDI +E E T
Sbjct: 302 KATTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESEAREMGIDPHAPSTSLDFSD 361
Query: 366 INVDEIIAHL 375
D +
Sbjct: 362 AAADNENSEE 371
>gi|78042921|ref|YP_360589.1| transcription elongation factor NusA [Carboxydothermus
hydrogenoformans Z-2901]
gi|77995036|gb|ABB13935.1| transcription termination factor NusA [Carboxydothermus
hydrogenoformans Z-2901]
Length = 346
Score = 384 bits (986), Expect = e-104, Method: Composition-based stats.
Identities = 154/341 (45%), Positives = 237/341 (69%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E LQ + +K I +V+L ++ A + YG + RV I+ TG++ ++ L
Sbjct: 2 NTEFLQAVQEIEKQKGIPAEVLLEATEQALLSAYKKNYGINQNARVHIDRVTGEVKVYAL 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVEEV++ +ISL+ AR++DP +++G V+ + P +FGR+A Q+AKQV+IQ++REA
Sbjct: 62 KTVVEEVKDPRLEISLEEAREKDPRLNLGDVLEIEVTPRNFGRIAAQNAKQVVIQRIREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER++ Y EF + G+II+G ++RV+ NV VDLG ++ ++ E I EN + GDR+K+Y
Sbjct: 122 ERNQIYEEFSSREGDIITGIIRRVDQKNVYVDLGKTEAILPPQEQIPGENYKFGDRIKAY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ +V++ +GP ++LSRTHP + +L +E+PE+Y+G V++K+++R+ GSR+K+AV+S D
Sbjct: 182 LVEVKKTSKGPNIILSRTHPGLLKRLLELEIPELYDGTVELKSIAREAGSRSKIAVYSKD 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
++DP+GACVG +G R++ +V EL EKID+V WSPD A F+ NAL PA VT V + ED
Sbjct: 242 ENVDPIGACVGNKGLRIKNIVEELNGEKIDVVKWSPDPAKFIANALSPAKVTSVEVFEDE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346
V+VP QLSLAIG+ GQN RLA++LTGW IDI +E +
Sbjct: 302 KVARVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQ 342
>gi|301063436|ref|ZP_07203968.1| transcription termination factor NusA [delta proteobacterium
NaphS2]
gi|300442375|gb|EFK06608.1| transcription termination factor NusA [delta proteobacterium
NaphS2]
Length = 474
Score = 384 bits (986), Expect = e-104, Method: Composition-based stats.
Identities = 192/429 (44%), Positives = 273/429 (63%), Gaps = 4/429 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
+L ++ D V+ EK +D+ V++ + ++++ AAR YG D+ V N E G++ F E
Sbjct: 4 DLRKVIDQVSREKGVDQAVLIGALEEAVKAAARKKYGNEYDLEVIYNEEMGEVEAFEFKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEE EN QISLK A + DP +IG + + P FGR+A QSAKQVI+Q+++EAER
Sbjct: 64 VVEETENPNLQISLKEALELDPETEIGDSLGIKMDPDTFGRIAAQSAKQVIMQRLKEAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
D Y +F D+ GEI++G V+R + G++IV+LG ++ + E I RE+ + GDRV++YI
Sbjct: 124 DIVYDDFIDRRGEIVNGIVQRFDRGSIIVNLGRAEAELPHKEQIPRESYKQGDRVRAYIL 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
DVR+ RGPQ++LSRTHP + LF EVPEI GIVQ+ V+R+PG RAK+AV S D
Sbjct: 184 DVRKISRGPQIILSRTHPNIVAILFENEVPEISEGIVQIIQVAREPGGRAKIAVSSKDPD 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVGACVGM+G RVQAVV ELR EKIDIV W PDSA F+ NAL PA +T+V++DED
Sbjct: 244 VDPVGACVGMKGRRVQAVVQELRGEKIDIVTWDPDSAKFICNALAPAEITRVIVDEDNHS 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
+EV+VP +QLSLAIG+RGQNVRLA++LTGW +D++ E + + + F
Sbjct: 304 MEVVVPDDQLSLAIGKRGQNVRLAAKLTGWRLDVVGETKYNETLKDGFRSLLDLN----G 359
Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427
V E IA L F ++A + ++ ++G +E A + A YL ++
Sbjct: 360 VGEKIATELYDADFRSARDIAGSTVEDLMVVKGISQEKAEALIAEANAYLLAKSQETKED 419
Query: 428 IRELGVSEE 436
++
Sbjct: 420 APGETDPDD 428
>gi|261419460|ref|YP_003253142.1| transcription elongation factor NusA [Geobacillus sp. Y412MC61]
gi|297530565|ref|YP_003671840.1| transcription termination factor NusA [Geobacillus sp. C56-T3]
gi|319766275|ref|YP_004131776.1| NusA antitermination factor [Geobacillus sp. Y412MC52]
gi|261375917|gb|ACX78660.1| NusA antitermination factor [Geobacillus sp. Y412MC61]
gi|297253817|gb|ADI27263.1| transcription termination factor NusA [Geobacillus sp. C56-T3]
gi|317111141|gb|ADU93633.1| NusA antitermination factor [Geobacillus sp. Y412MC52]
Length = 383
Score = 383 bits (985), Expect = e-104, Method: Composition-based stats.
Identities = 161/370 (43%), Positives = 233/370 (62%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+LL+ + EK I ++VV+ + +I A + +G ++RV++N +TG I +F
Sbjct: 2 NTQLLEALADLMREKGISKEVVMEAIEAAIVSAYKRNFGQAQNVRVDLNMDTGTIRVFTR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+VVEEV + +ISL+ A+ +P+ IG VV + P DFGR+A Q+AKQV+ Q+VREA
Sbjct: 62 KDVVEEVADPRLEISLEDAQRINPNYQIGDVVELEVTPRDFGRIAAQTAKQVVTQRVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y EF D+ +I++G V+RV+ V V LG ++ ++ +E + E +P DR+K Y
Sbjct: 122 ERSIIYAEFVDREEDIMTGIVQRVDPRFVYVSLGKAEALLPANEQMPNETYKPHDRLKVY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+++R+ G R+K++V S +
Sbjct: 182 ITKVEKTTKGPQIFVSRTHPGLLKRLFELEVPEIYDGTVEIKSIAREAGDRSKISVHSDN 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DPVGACVG RG RVQA+V EL EKIDIV WS D FV NAL PA V +V+++E+
Sbjct: 242 PEVDPVGACVGPRGQRVQAIVDELNGEKIDIVRWSADPVEFVANALSPAKVLRVIVNEEQ 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
VIVP QLSLAIG+RGQN RLA++LTGW IDI +E E T
Sbjct: 302 KATTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESEAREMGIDPHAPSTSLDFSD 361
Query: 366 INVDEIIAHL 375
D +
Sbjct: 362 AAADNENSEE 371
>gi|138894780|ref|YP_001125233.1| transcription elongation factor NusA [Geobacillus
thermodenitrificans NG80-2]
gi|196247596|ref|ZP_03146298.1| NusA antitermination factor [Geobacillus sp. G11MC16]
gi|134266293|gb|ABO66488.1| N utilization substance protein A [Geobacillus thermodenitrificans
NG80-2]
gi|196212380|gb|EDY07137.1| NusA antitermination factor [Geobacillus sp. G11MC16]
Length = 383
Score = 383 bits (984), Expect = e-104, Method: Composition-based stats.
Identities = 156/370 (42%), Positives = 233/370 (62%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+LL+ + EK I ++V++ + ++ A + +G ++RV++N +TG I +
Sbjct: 2 NTQLLEALADLMREKGISKEVIMEAIEAALVSAYKRNFGQAQNVRVDLNMDTGTIRVLAR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+VVEEV + +ISL+ A+ +P+ IG VV + P DFGR+A Q+AKQV+ Q+VREA
Sbjct: 62 KDVVEEVTDPRLEISLEEAQRLNPNYQIGDVVELEVTPRDFGRIAAQTAKQVVTQRVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y EF D+ +I++G V+R++ V V LG ++ ++ +E + E +P DR+K Y
Sbjct: 122 ERSIIYAEFVDREEDIMTGIVQRIDPRFVYVSLGKAEALLPANEQMPNETYKPHDRLKVY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+++R+ G R+K++V S +
Sbjct: 182 ITKVEKTTKGPQIFVSRTHPGLLKRLFELEVPEIYDGTVEIKSIAREAGDRSKISVHSDN 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DPVGACVG +G RVQA+V EL EKIDIV WS D FV NAL PA V +V+++E+
Sbjct: 242 PEVDPVGACVGPKGQRVQAIVDELHGEKIDIVRWSADPVEFVANALSPAKVLRVIVNEEQ 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
VIVP QLSLAIG+RGQN RLA++LTGW IDI +E E T
Sbjct: 302 KATTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESEAREMGIDPHAPSTSLDFDG 361
Query: 366 INVDEIIAHL 375
+ D +
Sbjct: 362 VTADNENSDE 371
>gi|88607683|ref|YP_505048.1| transcription elongation factor NusA [Anaplasma phagocytophilum HZ]
gi|88598746|gb|ABD44216.1| N utilization substance protein A [Anaplasma phagocytophilum HZ]
Length = 514
Score = 383 bits (984), Expect = e-104, Method: Composition-based stats.
Identities = 207/522 (39%), Positives = 331/522 (63%), Gaps = 29/522 (5%)
Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64
+ LEL+++A VA ++ +D V++ + +++ + YG S I+V I+ +TG IS+ R
Sbjct: 8 DNLELIRVARDVAEQRGLDLGVIVEAIEQALEVVSHVKYG-DSKIKVSIDRKTGVISVAR 66
Query: 65 LLEVVEEVENYTCQ--------------ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVA 110
+ VV++ + + + + A +++G ++ +PLPP+D +
Sbjct: 67 QVLVVKDDFTFDSEECGIAAEEVNKYKLVRISDALADGEQVEVGDILLEPLPPIDIDYNS 126
Query: 111 VQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDET 170
+ AKQ + Q + ER RQY EFKD+VG+++ G VKRVEY N+IVDL S+G + T
Sbjct: 127 AKLAKQKVAQLIMMQERKRQYEEFKDRVGDLVYGVVKRVEYNNIIVDLNGSEGYLPVYNT 186
Query: 171 ISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVS 230
I E RP RVK+++ DVRRE GPQ+ LSR +FM LF E+ E+Y+GIV +KA++
Sbjct: 187 IRGEVFRPNARVKAHVEDVRREATGPQIFLSRVSKRFMELLFKQEISEVYDGIVTIKALA 246
Query: 231 RDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA 290
RD GSR+K+AV+SSD ++DPVGAC+G RG R+Q +V EL EKID++ +SPD A FV++A
Sbjct: 247 RDAGSRSKVAVYSSDKNVDPVGACIGARGVRIQNIVAELNGEKIDVIPYSPDLAKFVVSA 306
Query: 291 LRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350
+ PA V KV++DEDV +IE++VP+ Q+SLAIGR GQN+RLAS+L GW+ID+I +E +S
Sbjct: 307 IAPAEVVKVIIDEDVEKIELVVPESQVSLAIGRYGQNIRLASELVGWSIDVIGDETESTR 366
Query: 351 RQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410
+ K+ + + F++ ++V+EII LLV+EGF+ +E+L ++ +IA+++GF+EE A E++
Sbjct: 367 KAKELSSGAKVFVEDLDVEEIIGQLLVSEGFSSIEDLDRAEVGDIAAVDGFNEEIARELK 426
Query: 411 GRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470
RA E L + + + VSEE+ +P + + V L ENG++++ED+A D+
Sbjct: 427 TRAAECLARKRKEAIEMLESMSVSEEVMQLPFLQVEDIVKLSENGVRSVEDIASLCTDEF 486
Query: 471 LGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512
K+QV+S+I+ +R ++GW+
Sbjct: 487 YDIVPRAK--------------LSKEQVDSVILESRKRVGWV 514
>gi|218782565|ref|YP_002433883.1| transcription elongation factor NusA [Desulfatibacillum
alkenivorans AK-01]
gi|218763949|gb|ACL06415.1| NusA antitermination factor [Desulfatibacillum alkenivorans AK-01]
Length = 488
Score = 382 bits (981), Expect = e-104, Method: Composition-based stats.
Identities = 194/430 (45%), Positives = 283/430 (65%), Gaps = 5/430 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
++ ++ D V+ +K ID++V+++ + +++Q AAR G +DI V+ N E G++ +F+ E
Sbjct: 5 DIGRVIDQVSRDKGIDKNVLIATLEEALQAAARKKLGPRADIEVQYNEEAGELEVFQFRE 64
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV ++S++ R+ DP ++G + + FGR+A QSAKQVIIQK+++AER
Sbjct: 65 VVEEVTEPDLEMSMEDGRELDPDCELGDSLGSKMDTATFGRIAAQSAKQVIIQKLKDAER 124
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
D Y F D+ GEII+G ++R++ G++IV+LG ++GV+ E + RE GDR++++I
Sbjct: 125 DAVYSSFMDRKGEIINGIMQRMDRGDIIVNLGQTEGVLPSREQVPRETYHRGDRIRAFIL 184
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
DV E RGPQ++LSRTHP F+ LF MEVPEI G+V V A +R+PG RAK+AV SSDS
Sbjct: 185 DVVLEGRGPQIILSRTHPNFLTSLFKMEVPEIGEGVVSVMAGAREPGVRAKIAVASSDSD 244
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
ID VGACVGM+GSRVQ VV ELR EKIDIV W DSA FV NAL PA +++V++DE+
Sbjct: 245 IDAVGACVGMKGSRVQNVVHELRGEKIDIVPWHADSAKFVCNALAPAQISRVIIDEENHA 304
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
+EVIVP E LS+AIG++GQNVRLAS+LTGW +D+ +E S + M+
Sbjct: 305 MEVIVPDEFLSVAIGKKGQNVRLASKLTGWHLDVKSETRYSR----TMQDGYNSLMELAE 360
Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427
+DE IA L +GF VEEL+ ++ I+G D A + A+E + + + Q
Sbjct: 361 LDENIADALYEKGFYSVEELSAADPDDLVQIKGIDLTLADTLIIAAQEAMASMAMEKQAS 420
Query: 428 I-RELGVSEE 436
+E +E+
Sbjct: 421 APQEAEAAED 430
>gi|255658253|ref|ZP_05403662.1| transcription termination factor NusA [Mitsuokella multacida DSM
20544]
gi|260849564|gb|EEX69571.1| transcription termination factor NusA [Mitsuokella multacida DSM
20544]
Length = 378
Score = 381 bits (978), Expect = e-103, Method: Composition-based stats.
Identities = 154/356 (43%), Positives = 232/356 (65%)
Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64
N E L + EK ID +V+ + ++ A + +G+ ++RV ++ ETG ++
Sbjct: 11 NGQEFLTTLKELGKEKGIDEEVLFEAIEAALISAYKRNFGSAQNVRVTLSRETGHYHVYA 70
Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
+ VVE+ E+ +ISL AR P ++G V+ + P +FGR+A Q+AKQV++Q++RE
Sbjct: 71 IKTVVEDPEDEITEISLAQARTIKPDYEVGDVIEIEVTPANFGRIAAQTAKQVVVQRIRE 130
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER Y EF + G+I++G V+RVE NV +DLG ++ V+ E I E GDR+K+
Sbjct: 131 AERGIIYEEFMSREGDILTGLVERVENHNVYIDLGKTEAVLTPAEQIPTETYAHGDRIKA 190
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
Y+ +V++ +GPQ+++SRTHP + +LF +EVPEI GIV++K+V+R+PG+R+K+AV+S
Sbjct: 191 YVVEVKKTNKGPQIVVSRTHPGLLKRLFELEVPEIQEGIVEIKSVAREPGNRSKIAVYSK 250
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D ++DPVG+CVG RG RVQ++V EL EKIDIV WS + A F+ NAL PA V V ++E
Sbjct: 251 DENVDPVGSCVGHRGLRVQSIVDELGSEKIDIVKWSDNPAKFIANALSPAKVVSVAVNET 310
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + + +
Sbjct: 311 EKVSRVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQAADEELDANMNEVE 366
>gi|323705403|ref|ZP_08116978.1| transcription termination factor NusA [Thermoanaerobacterium
xylanolyticum LX-11]
gi|323535305|gb|EGB25081.1| transcription termination factor NusA [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 345
Score = 380 bits (977), Expect = e-103, Method: Composition-based stats.
Identities = 151/344 (43%), Positives = 227/344 (65%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E ++ + + +K I ++ + + ++ A + YGT +++V+++ ETGD+ ++
Sbjct: 2 NTEFIEALEQICKDKGIPKETMFEAIEAALVSAYKKNYGTAQNVKVKMDRETGDVKVYAQ 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVE V N +ISL+ A+ +G V + P FGR+A Q+AKQV++Q++REA
Sbjct: 62 KTVVENVYNDLLEISLEEAQKLSKKYLVGDTVDIEVTPKSFGRIAAQNAKQVVVQRIREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y +F K EI++G V+R+E NV+VDLG ++ + +E I E + GDR+K Y
Sbjct: 122 ERGIVYEDFLSKESEIVTGIVERIEKKNVLVDLGKTEATLTPNEQIPNETYKHGDRIKVY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I +V++ +GPQ+L+SR+HP + +LF MEVPE+ GIV+++++SR+PGSR K+AV++ D
Sbjct: 182 IVEVKKTTKGPQILISRSHPGLVKRLFEMEVPELQQGIVEIRSISREPGSRTKMAVYAKD 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
++DPVG+CVG +G+RVQAVV EL+ EKIDIV WS FV NAL PA V + +DE
Sbjct: 242 ENVDPVGSCVGYKGARVQAVVNELKGEKIDIVKWSSKPQEFVTNALSPAKVLSIDIDEKE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
V+VP QLSLAIG+ GQNVRLA++LTGW IDI +E
Sbjct: 302 KIARVVVPDYQLSLAIGKEGQNVRLAAKLTGWKIDITSESTAKS 345
>gi|313901626|ref|ZP_07835063.1| NusA antitermination factor [Thermaerobacter subterraneus DSM
13965]
gi|313468107|gb|EFR63584.1| NusA antitermination factor [Thermaerobacter subterraneus DSM
13965]
Length = 473
Score = 380 bits (977), Expect = e-103, Method: Composition-based stats.
Identities = 166/344 (48%), Positives = 236/344 (68%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E ++ + + +K ID+D +L + ++ A R +GT ++ V I+ ETG+I +
Sbjct: 2 NAEFIEALEDLERQKGIDKDTLLEAIEAALVAAFRRHFGTAQNVAVRIDRETGEIRVVAR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+VVEEVE+ + QIS+ AR+ DP G VV + P DFGR+A Q+AKQV++Q++REA
Sbjct: 62 RDVVEEVEDPSTQISVAEAREIDPRYKPGDVVEQEVTPRDFGRIAAQTAKQVVLQRIREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ERD Y EF + G+I++G V+RV+ NV VDLG ++ V+ E I E RPGDR+K Y
Sbjct: 122 ERDLIYEEFIAREGDIVTGVVQRVQGRNVFVDLGRTETVLFPSEQIPGERYRPGDRIKVY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I +VR+ +GPQ+L+SR+HP + +LF +EVPEI++GIV++K R+PG RAK+AV + D
Sbjct: 182 IVEVRKTPKGPQILISRSHPNLIKRLFELEVPEIHDGIVEIKEAVREPGVRAKVAVDTRD 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DPVGACVG RG+RVQAVV ELR E+ID++ W+ + FV NAL PA VT+V+L+ +
Sbjct: 242 ERVDPVGACVGPRGARVQAVVAELRGERIDVIRWAEEPEQFVANALSPAKVTRVILEPET 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
VIVP QLSLAIG+ GQN RLA++LTGW IDI E + +
Sbjct: 302 RVARVIVPDHQLSLAIGKEGQNARLAARLTGWKIDIHAESQAAE 345
>gi|57239198|ref|YP_180334.1| transcription elongation factor NusA [Ehrlichia ruminantium str.
Welgevonden]
gi|58579156|ref|YP_197368.1| transcription elongation factor NusA [Ehrlichia ruminantium str.
Welgevonden]
gi|58617209|ref|YP_196408.1| transcription elongation factor NusA [Ehrlichia ruminantium str.
Gardel]
gi|57161277|emb|CAH58198.1| putative N utilization substance protein A [Ehrlichia ruminantium
str. Welgevonden]
gi|58416821|emb|CAI27934.1| Transcription elongation protein nusA [Ehrlichia ruminantium str.
Gardel]
gi|58417782|emb|CAI26986.1| Transcription elongation protein nusA [Ehrlichia ruminantium str.
Welgevonden]
Length = 517
Score = 380 bits (976), Expect = e-103, Method: Composition-based stats.
Identities = 211/524 (40%), Positives = 336/524 (64%), Gaps = 32/524 (6%)
Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64
+ LEL+++A +A +K ++ DV++ + ++IQ +RS YG I+V ++ +TG IS +R
Sbjct: 8 DNLELIRVAKDIADQKGLNLDVIIRAIEEAIQLTSRSRYG-NCKIKVTVDKKTGLISTYR 66
Query: 65 LLEVVEEV---------ENYTCQ--------ISLKVARDRDPSIDIGGVVSDPLPPMDFG 107
+ V+ + EN I+L A+ D + +G ++ +PLP +D
Sbjct: 67 QVLVISDNGEVVIPEGKENEIDHADVNKYKLITLTEAKQIDENAKLGDIMLEPLPVIDLD 126
Query: 108 RVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRR 167
+ + AKQ I Q + ER +QY FKD++G+I+ GT KR+EY NVIVDL ++G +
Sbjct: 127 YSSAKIAKQKIAQVIVSEERKKQYESFKDRIGDIVYGTAKRIEYNNVIVDLNGNEGYLSA 186
Query: 168 DETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227
I E R GDRVK++I DVR+E GPQ+ LSR + FM +LF E+PEIY+GIV +K
Sbjct: 187 SNLIKGEVFRVGDRVKAHIEDVRKENSGPQIFLSRVNKGFMEQLFKQEIPEIYDGIVTIK 246
Query: 228 AVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFV 287
A++RDPGSR+K+AVFSSD +IDPVGACVG RG R+Q+++ EL EKID+V++SP+ F+
Sbjct: 247 AIARDPGSRSKVAVFSSDKNIDPVGACVGARGVRIQSIIAELHGEKIDVVLYSPELPKFI 306
Query: 288 INALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347
+NA+ PA V KV++DED ++E+I+P+ QLSLAIGR GQN+RLAS+L W ID+I +E +
Sbjct: 307 VNAIAPAEVLKVIIDEDKEKVELIIPENQLSLAIGRYGQNIRLASELVNWKIDVIGDETE 366
Query: 348 SINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV 407
S + K+ ++ F++ ++V+EII LL EGF +E++ +S+I++I+GF+EE A+
Sbjct: 367 STRKAKELTVGSRIFVEGLDVEEIIGQLLFTEGFVSIEDIDQASVSDISAIDGFNEEIAI 426
Query: 408 EIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSV 467
E++ RA +YL D +++ + L + +++ +P + +AL E+GI +ED+AG
Sbjct: 427 ELKNRASDYLTRKDAEIKQILESLPIDKDVAVLPFLKPSDIIALSESGINNLEDIAGLCT 486
Query: 468 DDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGW 511
D+ + ++ KDQ++S+I+ +R K+GW
Sbjct: 487 DEFYEI--------------VPNVALTKDQIDSIILESRRKIGW 516
>gi|212639524|ref|YP_002316044.1| transcription elongation factor NusA [Anoxybacillus flavithermus
WK1]
gi|212561004|gb|ACJ34059.1| Transcription elongation factor [Anoxybacillus flavithermus WK1]
Length = 367
Score = 380 bits (976), Expect = e-103, Method: Composition-based stats.
Identities = 152/344 (44%), Positives = 223/344 (64%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
ELL A+ +K I ++V++ + +I A + + ++RV+ N ETG I +F
Sbjct: 2 NTELLDALTALERDKGISKEVLIEAIEAAIVSAYKRNFNQAQNVRVDFNQETGTIRVFAR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
EVV+EV + +ISL A+ +P+ +G VV + P +FGR+A Q+AKQV+ Q+VREA
Sbjct: 62 KEVVDEVYDSRLEISLDEAKRINPNYQVGDVVEIEVTPKNFGRIAAQTAKQVVTQRVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y EF D+ +I++G V+R + + V LG + ++ E + E +P DR+K Y
Sbjct: 122 ERGVIYAEFVDREEDIMTGIVQRTDSKFIYVSLGKIEALLPVSEQMPNETYKPHDRIKVY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V S +
Sbjct: 182 ITKVEKTTKGPQIYVSRTHPGLLKRLFELEVPEIYDGTVEIKSVAREAGDRSKISVHSDN 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DPVGACVG +G RVQA+V EL+ EKIDIV WS D FV NAL P+ V V+++E+
Sbjct: 242 PEVDPVGACVGPKGQRVQAIVNELKGEKIDIVRWSSDPVEFVANALSPSKVLDVIVNEEE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
VIVP QLSLAIG+RGQN RLA++LT W IDI ++ E
Sbjct: 302 KATTVIVPDYQLSLAIGKRGQNARLAAKLTNWKIDIKSQSEAEQ 345
>gi|239826654|ref|YP_002949278.1| transcription elongation factor NusA [Geobacillus sp. WCH70]
gi|239806947|gb|ACS24012.1| NusA antitermination factor [Geobacillus sp. WCH70]
Length = 382
Score = 379 bits (973), Expect = e-103, Method: Composition-based stats.
Identities = 160/368 (43%), Positives = 234/368 (63%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+LL + EK I ++VV+ + +I A + +G ++RV++N ETG I +F
Sbjct: 2 NTQLLDALADIIREKGISKEVVMEAIEAAIISAYKRNFGQAQNVRVDLNTETGTIRVFAR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
EVV+EV + +ISL+ A+ +P+ IG V+ + P DFGR+A Q+AKQV+ Q+VREA
Sbjct: 62 KEVVDEVNDPRLEISLEEAQRINPNYQIGDVLELEVTPKDFGRIAAQTAKQVVTQRVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y EF D+ +I++G V+RV+ V V LG ++ ++ E + E +P DR+K Y
Sbjct: 122 ERSVIYAEFVDREEDIMTGIVQRVDPRFVYVSLGKTEALLPASEQMPNETYKPHDRIKVY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+++R+ G R+K++V S +
Sbjct: 182 ITKVEKTTKGPQIFVSRTHPGLLKRLFELEVPEIYDGTVEIKSIAREAGDRSKISVHSDN 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DPVGACVG +G RVQAVV EL EKIDIV WS D FV NAL PA V +V+++E+
Sbjct: 242 PEVDPVGACVGPKGQRVQAVVEELNGEKIDIVRWSADPVEFVANALSPAKVLRVIVNEEQ 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
VIVP QLSLAIG+RGQN RLA++LT W IDI +E E + + T +
Sbjct: 302 KATTVIVPDYQLSLAIGKRGQNARLAAKLTNWKIDIKSESEARELGIDPYAQSTFLDSEE 361
Query: 366 INVDEIIA 373
+V+
Sbjct: 362 TSVNNEND 369
>gi|295399850|ref|ZP_06809831.1| transcription termination factor NusA [Geobacillus
thermoglucosidasius C56-YS93]
gi|312111638|ref|YP_003989954.1| NusA antitermination factor [Geobacillus sp. Y4.1MC1]
gi|294978253|gb|EFG53850.1| transcription termination factor NusA [Geobacillus
thermoglucosidasius C56-YS93]
gi|311216739|gb|ADP75343.1| NusA antitermination factor [Geobacillus sp. Y4.1MC1]
Length = 382
Score = 379 bits (973), Expect = e-103, Method: Composition-based stats.
Identities = 161/368 (43%), Positives = 233/368 (63%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+LL + EK I ++VV+ + +I A + +G ++RV++N ETG I +F
Sbjct: 2 NTQLLDALADIIREKGISKEVVMEAIEAAIISAYKRNFGQAQNVRVDLNMETGTIRVFAR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
EVVEEV + QISL+ A+ DP+ G VV + P DFGR+A Q+AKQV+ Q+VREA
Sbjct: 62 KEVVEEVTDPRLQISLEEAQRIDPNYQSGDVVELEVTPRDFGRIAAQTAKQVVTQRVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y EF D+ +I++G V+R++ V V LG ++G++ E + E +P DR+K Y
Sbjct: 122 ERSVIYAEFVDREEDIMTGIVQRIDPRFVYVSLGKTEGLLPASEQMPNETYKPHDRIKVY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+++R+ G R+K++V S +
Sbjct: 182 ITKVEKTTKGPQIFVSRTHPGLLKRLFELEVPEIYDGTVEIKSIAREAGDRSKISVHSDN 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DPVGACVG +G RVQAVV EL EKIDIV WS D FV NAL PA V +V+++E+
Sbjct: 242 PEVDPVGACVGPKGQRVQAVVEELNGEKIDIVRWSADPVEFVANALSPAKVLRVIVNEEQ 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
VIVP QLSLAIG+RGQN RLA++LT W IDI +E E + + + +
Sbjct: 302 KATTVIVPDYQLSLAIGKRGQNARLAAKLTNWKIDIKSESEARELGIDPYAQSSFLDPEE 361
Query: 366 INVDEIIA 373
++
Sbjct: 362 TPINNEND 369
>gi|229544433|ref|ZP_04433491.1| NusA antitermination factor [Bacillus coagulans 36D1]
gi|229324918|gb|EEN90595.1| NusA antitermination factor [Bacillus coagulans 36D1]
Length = 399
Score = 378 bits (971), Expect = e-102, Method: Composition-based stats.
Identities = 156/350 (44%), Positives = 225/350 (64%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
EL+ + EK I RDV++ + ++ A R + ++R ++N G I +F +
Sbjct: 4 ELVDALTILEKEKGISRDVLVEAIEAALVSAYRRNFNQAQNVRTDLNLANGTIRVFARKD 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + +ISL+ A+ +PS +IG VV + P DFGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 VVEEVFDPRLEISLEDAQKINPSYEIGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y +F D+ E+++G V+R + V LG ++ ++ E E P DR+K YI
Sbjct: 124 GIIYNQFIDREDEVMTGIVQRKDPRFTYVSLGKTEALLPPGEQSPNETYNPHDRIKVYIT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V R +GPQ+ +SRTHP + +LF +EVPEIY+GIV++++++R+ G R+K++V++
Sbjct: 184 KVERTTKGPQIFVSRTHPGLLKRLFELEVPEIYDGIVEIRSIAREAGDRSKISVYTDRPE 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVGACVG +G RVQA+V EL EKIDIV WS D A FV NAL PA V V++DE+
Sbjct: 244 VDPVGACVGPKGQRVQAIVNELHGEKIDIVKWSDDPAKFVANALSPAKVLDVLVDENNKA 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + + +E
Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDARESGIYPRSE 353
>gi|323701863|ref|ZP_08113533.1| transcription termination factor NusA [Desulfotomaculum nigrificans
DSM 574]
gi|323533167|gb|EGB23036.1| transcription termination factor NusA [Desulfotomaculum nigrificans
DSM 574]
Length = 386
Score = 378 bits (970), Expect = e-102, Method: Composition-based stats.
Identities = 155/362 (42%), Positives = 237/362 (65%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E L+ + EK I DV+L + ++ A + +G++ + RV I+ TGD ++
Sbjct: 2 NSEFLEALKDLEKEKGIAVDVLLEAIEAALLSAYKRNFGSLQNARVHIDRNTGDFKVYSQ 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVEEVE+ +ISL+ AR DP ++G VV + + P +FGR+A Q+AKQV++Q++REA
Sbjct: 62 RTVVEEVEDDRLEISLEDARKIDPRFNLGDVVENEVTPRNFGRIAAQTAKQVVVQRIREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER+ + EF ++ G+I++G V+R+E NV ++LG ++ ++ E + E RPGDR+K+Y
Sbjct: 122 ERNIIFEEFANREGDILTGIVQRIENKNVFIELGKTEAILTPSEQMPGEEYRPGDRLKTY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I +VR+ +GPQ+L+SRTHP + +L MEVPE+Y G++++K+++R+ G R+K+AV+S D
Sbjct: 182 IVEVRKTTKGPQILVSRTHPGLLKRLLEMEVPELYEGVIELKSIAREAGYRSKIAVYSKD 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
++DPVGACVG +G RVQ +V+EL EKIDIV W D + FV ++L PA V V + ED
Sbjct: 242 ENVDPVGACVGPKGMRVQNIVSELNGEKIDIVKWDQDPSKFVASSLSPAKVVAVEVWEDE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
VIVP QLSLAIG+ GQN RLA++LTGW IDI +E + + +
Sbjct: 302 KVARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQMAEIYPEYNQYEENPEDGD 361
Query: 366 IN 367
+
Sbjct: 362 LE 363
>gi|251772259|gb|EES52829.1| transcription termination factor (NusA) [Leptospirillum
ferrodiazotrophum]
Length = 443
Score = 378 bits (970), Expect = e-102, Method: Composition-based stats.
Identities = 179/426 (42%), Positives = 255/426 (59%), Gaps = 14/426 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
ELL + D + EK I ++ ++ + +I AA+ YG + +VEI+P TG+I + L
Sbjct: 3 NQELLSVIDQLHREKGIPQETLIEALQSAILTAAKKRYGGGDNFQVEIDPRTGEIQVLHL 62
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+VE V + ++SL A++ DP ++G + L DFGRVA Q+AKQVI QKVREA
Sbjct: 63 RRIVEHVVSPMEEVSLAEAKESDPEAEVGDEIGAYLEIDDFGRVAAQAAKQVIFQKVREA 122
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
E EF + G +++G E N I+DLG ++ V+ E I RE+ GDRVK+
Sbjct: 123 EWSVVAKEFGGRKGNVVAGVYIGQEKRNFIIDLGKTEAVLPFKEQIPRESFHRGDRVKAL 182
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ D+R RGPQ++LSRTHP F+ +LF EVPEI G++++K V RDPG RAK+AV S D
Sbjct: 183 LLDIRTTTRGPQLILSRTHPDFLARLFEKEVPEISEGLIEIKGVVRDPGERAKVAVLSRD 242
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DE 303
+IDPVG+CVG++GSRVQA+V E+ EKIDI+ WSPD TF+ AL PA V +V E
Sbjct: 243 PNIDPVGSCVGVKGSRVQAIVREIHGEKIDIIDWSPDPGTFIARALSPAKVLRVATRDSE 302
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
V+V +QLSL+IGRRGQNVRLA++LTGW IDI +E++ +RQ
Sbjct: 303 FDKVATVVVANQQLSLSIGRRGQNVRLAAKLTGWKIDIFSEQQYEADRQARAGGDGAEEE 362
Query: 364 QA------------INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411
+ + +A L A G+ VE++A I +IA + +TA ++
Sbjct: 363 HSDAAPLLLGIEDLPGMGGNVADALKAAGYDTVEKIAEANIDDIAILPRLGPKTAAKLVE 422
Query: 412 RAREYL 417
AR++L
Sbjct: 423 TARDFL 428
>gi|308173623|ref|YP_003920328.1| transcription translation coupling factor involved in Rho-dependent
transcription termination [Bacillus amyloliquefaciens
DSM 7]
gi|307606487|emb|CBI42858.1| transcription translation coupling factor involved in Rho-dependent
transcription termination [Bacillus amyloliquefaciens
DSM 7]
gi|328553445|gb|AEB23937.1| transcription elongation factor NusA [Bacillus amyloliquefaciens
TA208]
gi|328911764|gb|AEB63360.1| transcription translation coupling factor involved in Rho-dependent
transcription termination [Bacillus amyloliquefaciens
LL3]
Length = 373
Score = 378 bits (970), Expect = e-102, Method: Composition-based stats.
Identities = 151/368 (41%), Positives = 232/368 (63%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + EK I +D+++ + ++ A + + ++RV++N ETG I +F +
Sbjct: 4 ELLDALTILEKEKGISKDIIIEAIEAALISAYKRNFNQAQNVRVDLNRETGTIRVFARKD 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISL A+ P+ +G VV + P DFGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 VVDEVYDSRLEISLDDAQHIHPNYLVGDVVEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF D+ +I++G V+R++ + V LG + ++ +E + E+ +P DR+K +I
Sbjct: 124 GVIYSEFIDREEDIMTGIVQRLDSKFIYVSLGKIEALLPVNEQMPNESYKPHDRIKVFIT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V + D
Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEIEVPEIYDGTVELKSVAREAGDRSKISVRTDDPD 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVG+CVG +G RVQA+V EL+ EKIDIV WS D FV NAL P+ V V+++E+
Sbjct: 244 VDPVGSCVGPKGQRVQAIVNELKGEKIDIVNWSDDPVEFVANALSPSKVLDVIVNEEEKA 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + ++ +
Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDARDIGIFPREHEEDDDLEPLF 363
Query: 368 VDEIIAHL 375
++ A
Sbjct: 364 MEPETAES 371
>gi|303256975|ref|ZP_07342989.1| transcription termination factor NusA [Burkholderiales bacterium
1_1_47]
gi|330999163|ref|ZP_08322882.1| transcription termination factor NusA [Parasutterella
excrementihominis YIT 11859]
gi|302860466|gb|EFL83543.1| transcription termination factor NusA [Burkholderiales bacterium
1_1_47]
gi|329575363|gb|EGG56907.1| transcription termination factor NusA [Parasutterella
excrementihominis YIT 11859]
Length = 499
Score = 378 bits (970), Expect = e-102, Method: Composition-based stats.
Identities = 174/512 (33%), Positives = 299/512 (58%), Gaps = 31/512 (6%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARS--LYGTMSDIRVEINPETGDISLFRL 65
+LL + + +A+EK++D+ VVL+ + ++ A + G +DI V+++P TGD ++R
Sbjct: 4 DLLTMVEVLAHEKNVDQSVVLAALESALASAVKKAEFPGEDADIVVKVDPTTGDQKVWRQ 63
Query: 66 LEVVEE---VENYTCQISLKVARDRDPS---IDIGGVVSDPLPPMDF-GRVAVQSAKQVI 118
VV + ++ QI A++ +++G V PLP ++ GR AKQVI
Sbjct: 64 WLVVPDEQGLQEPDRQILQWEAKEDYSDQGEMNVGDYVRKPLPDVNVTGRRFATDAKQVI 123
Query: 119 IQKVREAERDRQYLEFKDKVGEI--ISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENL 176
IQ++REAER++ EF ++ ++ ++G VKR + + I+++G D + R + I ENL
Sbjct: 124 IQRLREAERNQLLNEFLERYKDVKVVTGQVKRFDKSDAIIEIGRIDARLPRHQMIPMENL 183
Query: 177 RPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236
RPGDRV++Y+ + R Q+ LSRT +F+ +L VPEI G++++K ++RDPG R
Sbjct: 184 RPGDRVRAYVLKIDPTSRQQQITLSRTCNEFLGELMRQVVPEINEGLLEIKGIARDPGIR 243
Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296
AK+AV D IDP+G+C+G++GSR+Q+V EL +E+IDI+ W+ A +V++AL PA +
Sbjct: 244 AKVAVQVKDKRIDPIGSCIGVKGSRIQSVSGELMNERIDIIRWADQPAEYVMSALSPATI 303
Query: 297 TKVVLDEDVGRIEVIVPK-EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355
+ +++ ED ++EV+ P + +AIG G N RLAS+LTGW I+++ +++ + R+ +
Sbjct: 304 SSIIVHEDEHKVEVVTPDLDNSKIAIGSNGVNKRLASELTGWEIEVMDDDQAAKKREDEI 363
Query: 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415
R Q +++DE +A +L+ G +EE+A + E+ SIE FDE+T E++ RAR
Sbjct: 364 APRRQELCDRLDIDEEVAQVLIENGIETLEEVAYLPEEELLSIEQFDEDTVKELRSRART 423
Query: 416 YLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSE 475
L + ++ ++ + L +PG+ +I L GIKT++ LA S D+L+ +
Sbjct: 424 ALLTSALEREELLK--WADKSLVDLPGMTHEIANKLKPAGIKTLDQLADLSTDELVEMT- 480
Query: 476 NKGGNIEKFDGFLSSLGTPKDQVESMIIHARY 507
G D+ ++I AR
Sbjct: 481 ----------------GIDHDKAAALITKARE 496
>gi|154686077|ref|YP_001421238.1| transcription elongation factor NusA [Bacillus amyloliquefaciens
FZB42]
gi|154351928|gb|ABS74007.1| NusA [Bacillus amyloliquefaciens FZB42]
Length = 373
Score = 377 bits (969), Expect = e-102, Method: Composition-based stats.
Identities = 151/368 (41%), Positives = 231/368 (62%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + EK I +D+++ + ++ A + + ++RV++N ETG I +F +
Sbjct: 4 ELLDALTILEKEKGISKDIIIEAIEAALISAYKRNFNQAQNVRVDLNRETGTIRVFARKD 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISL A+ P+ +G VV + P DFGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 VVDEVYDSRLEISLDDAQHIHPNYLVGDVVEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF D+ +I++G V+R++ + V LG + ++ +E + E+ +P DR+K +I
Sbjct: 124 GVIYSEFIDREEDIMTGIVQRLDSKFIYVSLGKIEALLPVNEQMPNESYKPHDRIKVFIT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V + D
Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEIEVPEIYDGTVELKSVAREAGDRSKISVRTDDPD 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVG+CVG +G RVQA+V EL+ EKIDIV WS D FV NAL P+ V V++ E+
Sbjct: 244 VDPVGSCVGPKGQRVQAIVNELKGEKIDIVNWSDDPVEFVANALSPSKVLDVIVSEEEKA 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + ++ +
Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDARDLGIYPREHEEDDDLEPLF 363
Query: 368 VDEIIAHL 375
++ A
Sbjct: 364 MEPETAES 371
>gi|227499045|ref|ZP_03929182.1| NusA antitermination factor [Acidaminococcus sp. D21]
gi|226904494|gb|EEH90412.1| NusA antitermination factor [Acidaminococcus sp. D21]
Length = 359
Score = 377 bits (969), Expect = e-102, Method: Composition-based stats.
Identities = 145/341 (42%), Positives = 222/341 (65%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+ ++ +A EK I DV+ S + +++ A + +G+ ++RV +N E G+I ++
Sbjct: 2 NADFVRAIAQLAKEKHISPDVLYSAVEEALITAYKKNFGSTQNVRVSMNKENGEIHVYAQ 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+V EVEN +ISL A +P G VV + + P +FGR+A Q+AKQVI+Q++REA
Sbjct: 62 KNIVTEVENPLTEISLDEAFKLNPRYQAGDVVEEEVTPKNFGRIAAQNAKQVIVQRIREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y ++ D+ +I++GT++R+E N+ VDLG ++G + +E I E R+K Y
Sbjct: 122 ERGMVYEKYSDRENDIVTGTIQRIEGRNIFVDLGTAEGTLLPNEQIPGETYEYHQRIKCY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ +V++ +GPQ++LSRTHP + +LF +EV EI +G V + +V+R+PG R+K+AV S++
Sbjct: 182 VVEVKKTTKGPQIILSRTHPGLLKRLFELEVAEIQDGTVIIDSVAREPGMRSKIAVHSTN 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
S+DPVGACVG +G RVQ VV EL EKIDIV +S + +V +AL P+ V D +
Sbjct: 242 PSVDPVGACVGPKGMRVQTVVDELGGEKIDIVKYSDNPEEYVASALSPSKVVSAAADAEH 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346
V+VP QLSLAIG+ GQN RLA++LTGW IDI +E +
Sbjct: 302 KICRVVVPDFQLSLAIGKEGQNARLAAKLTGWKIDIKSETQ 342
>gi|295696156|ref|YP_003589394.1| transcription termination factor NusA [Bacillus tusciae DSM 2912]
gi|295411758|gb|ADG06250.1| transcription termination factor NusA [Bacillus tusciae DSM 2912]
Length = 383
Score = 377 bits (968), Expect = e-102, Method: Composition-based stats.
Identities = 157/345 (45%), Positives = 222/345 (64%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+ ++ D + EK I +DV++ + ++ + + + +++RV++N ETGD+ +F
Sbjct: 2 NQDFIEALDQLEREKGISKDVLIEAIEAALISGYKRNFNSAANVRVDVNRETGDVRVFAR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVEE + +ISL+ A P +G +V + P DFGR+A Q+AKQV+ Q++REA
Sbjct: 62 KTVVEETADPRMEISLEAAEQISPHYTVGDIVEIEVTPKDFGRIAAQTAKQVVTQRIREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y E+ D+ +I++G V+R + VDLG + ++ E I E L+ GDRVK++
Sbjct: 122 ERGLIYHEYLDREEDIVTGLVQRQDARYTYVDLGKVEALLPFHEQIPGEKLKQGDRVKAF 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I V + +GPQVLLSRTHP + +LF +EVPEIY G+V++K+V+R+ G R+K+AVFS
Sbjct: 182 ITKVEKTTKGPQVLLSRTHPGLLKRLFELEVPEIYEGVVEIKSVAREAGHRSKIAVFSRK 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DPVGACVG RG RVQ VV EL EK+DIV WS D FV NAL PA V V + ED
Sbjct: 242 PEVDPVGACVGPRGMRVQHVVAELHGEKVDIVKWSEDPEEFVKNALSPAKVVSVEIAEDE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350
VIVP QLSLAIG+ GQN RLA++LTGW IDI +E + N
Sbjct: 302 RVARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQVEAN 346
>gi|121535260|ref|ZP_01667074.1| NusA antitermination factor [Thermosinus carboxydivorans Nor1]
gi|121306145|gb|EAX47073.1| NusA antitermination factor [Thermosinus carboxydivorans Nor1]
Length = 348
Score = 377 bits (967), Expect = e-102, Method: Composition-based stats.
Identities = 150/346 (43%), Positives = 231/346 (66%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E +Q + + EK I +++ + ++ A + +G+ ++RV ++ TG+I ++
Sbjct: 3 NAEFMQAFEQLGKEKGIAPEILFDAIEAALISAYKRNFGSAQNVRVSLDRTTGEIHVYAR 62
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVE V++ ++SL+ AR D ++ VV + P DFGR+A Q+AKQV++Q++REA
Sbjct: 63 KTVVEVVKDPRLEMSLEEARAIDVRYELDDVVEIEVTPKDFGRIAAQTAKQVVVQRIREA 122
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y EF ++ +I++G V+R+E NV +DLG ++ ++ E I E + GDR+K+Y
Sbjct: 123 ERGIIYEEFSNRESDIVTGIVQRIEQKNVYIDLGKAEAILTPSEQIPGEVYKHGDRLKTY 182
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I +V++ +GPQ+L+SRTHP + +LF +EVPEI++G+V++K+V+R+PG R+K+AV S D
Sbjct: 183 IIEVKKTTKGPQILVSRTHPGLLKRLFELEVPEIHDGVVELKSVAREPGMRSKIAVHSRD 242
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
++D VGACVG +G RVQ +V ELR EKIDIV WS D A F+ NAL PA V V ++E
Sbjct: 243 ENVDAVGACVGHKGMRVQTIVNELRGEKIDIVKWSSDPAKFIANALSPAKVISVEVNETE 302
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351
+V+VP QLSLAIG+ GQN RLA++LTGW IDI +E +
Sbjct: 303 KVSKVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQVQSTT 348
>gi|332976856|gb|EGK13681.1| N utilization substance protein A [Desmospora sp. 8437]
Length = 377
Score = 376 bits (966), Expect = e-102, Method: Composition-based stats.
Identities = 150/343 (43%), Positives = 223/343 (65%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E + + + EK I ++V++ + ++ + + + ++RV+I+ +TG + +F
Sbjct: 2 NAEFIDALNQLEKEKGISKEVLIEAIEAALISGYKRNFHSAQNVRVDIDRDTGRVRVFAR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVEEV + +ISL+ A + +PS ++ +V + P DFGR+A Q+AKQV+ Q++REA
Sbjct: 62 KTVVEEVTDPRLEISLEAATEINPSFELDDIVEIEVTPADFGRIAAQTAKQVVTQRIREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y EF D+ +I++G V+R + + +DLG + ++ ET+ E + DRVK+Y
Sbjct: 122 ERSIIYEEFVDREADIVTGVVQRADSRHYYIDLGRVEALLPFAETMPGERFKHNDRVKAY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I V + +GPQV +SRTHP + +LF +EVPEIY GIV++++V+R+ G R+K+AV S D
Sbjct: 182 ITRVEKSTKGPQVFVSRTHPGLLKRLFELEVPEIYEGIVEIRSVAREAGHRSKIAVISRD 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DPVGACVG RG RVQ VV ELR EKIDIV WS + FV NAL P+ V +V + E
Sbjct: 242 EQVDPVGACVGHRGMRVQTVVNELRGEKIDIVRWSDEPVEFVSNALSPSKVVRVDIREAE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
+V+VP QLSLAIG+ GQN RLA++LTGW IDI +E E
Sbjct: 302 KVAQVVVPDHQLSLAIGKEGQNARLAAKLTGWKIDIKSESESD 344
>gi|332999998|gb|EGK19581.1| transcription elongation protein nusA [Shigella flexneri K-218]
Length = 407
Score = 376 bits (965), Expect = e-102, Method: Composition-based stats.
Identities = 177/423 (41%), Positives = 265/423 (62%), Gaps = 19/423 (4%)
Query: 94 GGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN 153
G V D + + F R+ Q+AKQVI+QKVREAER +F++ GEII+G VK+V N
Sbjct: 2 GDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDN 61
Query: 154 VIVDLGNS-DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLF 212
+ +DLGN+ + VI R++ + REN RPGDRV+ +Y VR E RG Q+ ++R+ P+ +++LF
Sbjct: 62 ISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELF 121
Query: 213 HMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDE 272
+EVPEI ++++KA +RDPGSRAK+AV ++D IDPVGACVGMRG+RVQAV TEL E
Sbjct: 122 RIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGE 181
Query: 273 KIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLAS 332
+IDIV+W + A FVINA+ PA V +V+DED +++ V L+ AIGR GQNVRLAS
Sbjct: 182 RIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLAS 241
Query: 333 QLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKI 392
QL+GW ++++T ++ Q + + F + +++DE A +LV EGF+ +EELA V +
Sbjct: 242 QLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPM 301
Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALG 452
E+ IEG DE T ++ RA+ L I ++ + + +++L ++ G+D + L
Sbjct: 302 KELLEIEGLDEPTVEALRERAKNALATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLA 361
Query: 453 ENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512
G+ T+EDLA +DDL G ++ ++I+ AR + W
Sbjct: 362 ARGVCTLEDLAEQGIDDLADIE-----------------GLTDEKAGALIMAAR-NICWF 403
Query: 513 EKE 515
E
Sbjct: 404 GDE 406
>gi|83589895|ref|YP_429904.1| NusA antitermination factor [Moorella thermoacetica ATCC 39073]
gi|83572809|gb|ABC19361.1| NusA antitermination factor [Moorella thermoacetica ATCC 39073]
Length = 362
Score = 376 bits (965), Expect = e-102, Method: Composition-based stats.
Identities = 154/341 (45%), Positives = 234/341 (68%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E +Q + EK I+ D++L + ++ A + +G++ ++RV+I +TG+I +
Sbjct: 2 NSEFIQALRDLEREKGINADILLEAIEAALISAYKKNFGSLQNVRVDIQRDTGEIKVLAQ 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+VVEEV + +ISL+ AR + ++G +V + P DFGR+A Q+AKQV++Q++REA
Sbjct: 62 RQVVEEVTDPRQEISLEEARAINSKYELGDIVEKEVTPRDFGRIAAQTAKQVVVQRIREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y EF + ++++G V+R E N+I+DLG ++ ++ E E R G+R+K Y
Sbjct: 122 ERGLIYEEFIGRENDLVTGVVQRQEGKNIILDLGRAEAILLPSEQSPGETYRQGERLKVY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ +VR+ +GPQ+L+SRTHP + +LF +EVPEI++GIV++K V+R+PG+R+K+AV S D
Sbjct: 182 VLEVRKTNKGPQILVSRTHPGLIKRLFELEVPEIHDGIVEIKGVAREPGARSKIAVHSRD 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DPVG+CVG +G+RVQAVV ELR EK+DI+ WS D A +V N+L PA V V +DE+
Sbjct: 242 EKVDPVGSCVGPKGARVQAVVQELRGEKVDIIKWSDDPAVYVANSLSPARVLDVTVDEEN 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346
+VIVP QLSLAIG+ GQN RLA+++TGW IDI E E
Sbjct: 302 KVSQVIVPDNQLSLAIGKEGQNARLAARITGWKIDIKPESE 342
>gi|20807843|ref|NP_623014.1| transcription elongation factor NusA [Thermoanaerobacter
tengcongensis MB4]
gi|20516405|gb|AAM24618.1| Transcription terminator [Thermoanaerobacter tengcongensis MB4]
Length = 346
Score = 376 bits (965), Expect = e-102, Method: Composition-based stats.
Identities = 153/345 (44%), Positives = 227/345 (65%), Gaps = 1/345 (0%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E ++ +++ EK I ++ + + ++ A R YGT ++++ ++ ETGD+ ++
Sbjct: 2 NAEFIEALNSICEEKGIPKETMFEAIEAALVSAYRKNYGTAQNVKIVMDRETGDVKVYAQ 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVEEV+N +ISL+ AR + IG +V + P +FGR+A Q+AKQV+IQ++REA
Sbjct: 62 KTVVEEVKNDLLEISLEDARKINKKYQIGDIVDIEVTPKNFGRIAAQNAKQVVIQRIREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER+ Y EF K E+++G V R NV+++LG + ++ E I E PGDR+K Y
Sbjct: 122 ERNVIYEEFLAKETEVVTGIVTRAAKNNVLINLGRVEAILTPSEQIPGETFSPGDRIKVY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I +V++ +GPQ+++SR+HP + +LF +E PEI GIV++++++R+PGSR K+AVFS D
Sbjct: 182 IVEVKKTTKGPQIIISRSHPGLVKRLFELESPEIQQGIVEIRSIAREPGSRTKMAVFSRD 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304
++DP+GACVG +GSRVQAVV EL+ EKIDIV WS F++NAL PA V + DE
Sbjct: 242 PNVDPIGACVGYKGSRVQAVVNELKGEKIDIVKWSSKPQEFIMNALSPAKAISVEIVDEK 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
VIVP QLSLAIG+ GQN RLA++LTGW IDI +E
Sbjct: 302 EKVARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESMVKS 346
>gi|284048695|ref|YP_003399034.1| transcription termination factor NusA [Acidaminococcus fermentans
DSM 20731]
gi|283952916|gb|ADB47719.1| transcription termination factor NusA [Acidaminococcus fermentans
DSM 20731]
Length = 362
Score = 375 bits (963), Expect = e-102, Method: Composition-based stats.
Identities = 147/340 (43%), Positives = 226/340 (66%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+ ++ +A EKSI DV+ S + +++ A + YG+ ++RV ++ ETG+I ++
Sbjct: 2 NADFVKAIALLAKEKSISPDVLYSAVEEALITAYKKNYGSAQNVRVSMHKETGEIHVYAR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+VEEV + T +ISL+ A+ + G ++ + P +FGR+A Q+AKQVI+Q++REA
Sbjct: 62 KNIVEEVTDPTTEISLEDAQKMNAHYQAGDILETEVTPKNFGRIAAQNAKQVIVQRIREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y + D+ +I++GTV+R+E NV +DLG ++G++ +E I E R+K Y
Sbjct: 122 ERGMVYERYSDRENDIVTGTVQRIEGRNVFIDLGTAEGLLLPNEQIPHETYDYHQRLKCY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ +V++ +GPQ++LSRTHP + +LF +EV EI +G V + +V+R+PG R+K+AV S++
Sbjct: 182 VVEVKKTTKGPQIILSRTHPGLLKRLFELEVSEIQDGTVIIDSVAREPGMRSKIAVHSTN 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
S+DPVGACVG +G RV+ +V ELR EKIDIV +S D +V NAL P+ V D+D
Sbjct: 242 PSVDPVGACVGPKGMRVRTIVDELRGEKIDIVKYSEDPEEYVANALSPSKVVSARADKDE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345
V+VP QLSLAIG+ GQN RLA++LTGW IDI +E
Sbjct: 302 KICRVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSES 341
>gi|325290363|ref|YP_004266544.1| NusA antitermination factor [Syntrophobotulus glycolicus DSM 8271]
gi|324965764|gb|ADY56543.1| NusA antitermination factor [Syntrophobotulus glycolicus DSM 8271]
Length = 429
Score = 375 bits (963), Expect = e-101, Method: Composition-based stats.
Identities = 152/341 (44%), Positives = 231/341 (67%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+E ++ + EK I + + + ++ A + Y ++ ++R +++ TG+I ++
Sbjct: 2 NIEFIEAVGELEKEKGISSEKLFEAIEAALVSAYKKNYSSLQNVRPQVDRNTGEIKVYAR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVEEV++ QISL+ A+ DP+ D+ +V + P +FGR+A Q+AKQV++Q++REA
Sbjct: 62 KNVVEEVDDSRQQISLEEAKKIDPNYDLNDIVEFEVTPREFGRIAAQTAKQVVVQRIREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER+ Y E+ ++ G+I++G V+R E NVIVDLG + V+ E I E +P +R+K+Y
Sbjct: 122 ERELIYGEYINREGDIVTGVVQRYEQRNVIVDLGKVEAVLPPSEQIPGETYQPFERIKTY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ +V++ +GPQVLLSRTHP + +LF +EVPEI++G V++KAV+R+ G+R+K+AV+S D
Sbjct: 182 VVEVKKTPKGPQVLLSRTHPGLIKRLFELEVPEIHDGFVEIKAVAREAGARSKIAVYSKD 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
++DPVGACVG +GSRVQ +V EL+ EK+DI+ WS D FV NAL PA V V +
Sbjct: 242 ENVDPVGACVGPKGSRVQNIVNELKGEKMDIITWSQDPVEFVSNALSPAKVLGVFPRFED 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346
VIVP QLSLAIG+ GQN RLA++LTGW IDI E +
Sbjct: 302 KVTLVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKNETQ 342
>gi|73667087|ref|YP_303103.1| transcription elongation factor NusA [Ehrlichia canis str. Jake]
gi|72394228|gb|AAZ68505.1| Transcription termination factor NusA C-terminal duplication
[Ehrlichia canis str. Jake]
Length = 517
Score = 375 bits (962), Expect = e-101, Method: Composition-based stats.
Identities = 214/524 (40%), Positives = 343/524 (65%), Gaps = 32/524 (6%)
Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64
+ LEL+++A +A +K ++ D+++ + ++IQ +RS YG I+V ++ +TG +S +R
Sbjct: 8 DNLELIRVAKDIADQKGLNLDIIIRAIEEAIQLTSRSKYG-NCKIKVTVDRKTGVVSTYR 66
Query: 65 LLEVVEE------VENYTCQI-----------SLKVARDRDPSIDIGGVVSDPLPPMDFG 107
+ V+ + EN +I +L A+ D + ++G ++ + LP +D
Sbjct: 67 QVLVINDNGEIVIPENKKSEIDSSDISKYKLITLTEAKQIDENAEVGDIMLEHLPVIDLD 126
Query: 108 RVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRR 167
+ + AKQ I Q + ER +QY +FKD++G+I+ GT KR+EY NVIVDL ++G +
Sbjct: 127 YSSAKIAKQKIAQVIISEERKKQYEDFKDRIGDIVYGTAKRIEYNNVIVDLNGNEGYLSA 186
Query: 168 DETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227
I E R GDRVK++I DVR+E GPQ+ LSR FM +LF E+PEIY+GIV +K
Sbjct: 187 ANLIKGEVFRVGDRVKAHIEDVRKENSGPQIFLSRISKGFMEQLFKQEIPEIYDGIVTIK 246
Query: 228 AVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFV 287
A++RDPGSR+K+AVFSSD +IDPVGACVG RG R+Q+++ EL EKID++++SP+ A F+
Sbjct: 247 AIARDPGSRSKVAVFSSDKNIDPVGACVGARGVRIQSIIYELHGEKIDVILYSPELAKFI 306
Query: 288 INALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347
+NA+ PA V KV++DED ++E+I+P+ QLSLAIGR GQN+RLAS+L GW ID+I +E +
Sbjct: 307 VNAIAPAEVLKVIIDEDKEKVELIIPENQLSLAIGRYGQNIRLASELIGWKIDVIGDETE 366
Query: 348 SINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV 407
S + K+ +E ++ F++ ++V+EII LL EGF +E++ +S+IA+I+GF+EE A
Sbjct: 367 SSRKAKELSEGSKIFVEGLDVEEIIGQLLFTEGFVSIEDIDQASVSDIAAIDGFNEEIAE 426
Query: 408 EIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSV 467
E++ RA +YL D +++ + L V +++ ++P + +AL ENGIK++ED+AG
Sbjct: 427 ELKSRAADYLTRKDAEIKQILDNLSVDKDVTTLPFLKPSDIIALSENGIKSLEDIAGLCT 486
Query: 468 DDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGW 511
D+ + ++ KDQ++S+I+ +R K+GW
Sbjct: 487 DEFFDI--------------VPNIALTKDQIDSVILESRKKIGW 516
>gi|311068183|ref|YP_003973106.1| transcription elongation factor NusA [Bacillus atrophaeus 1942]
gi|310868700|gb|ADP32175.1| transcription elongation factor NusA [Bacillus atrophaeus 1942]
Length = 372
Score = 374 bits (961), Expect = e-101, Method: Composition-based stats.
Identities = 150/363 (41%), Positives = 226/363 (62%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + EK I +D+++ + ++ A + + ++RV++N ETG I +F +
Sbjct: 4 ELLDALTILEKEKGISKDIIIEAIEAALISAYKRNFNQAQNVRVDLNRETGTIRVFARKD 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +IS+ A DP+ +G VV + P DFGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 VVDEVYDPRLEISIDDAHAIDPNYVVGDVVEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF D+ +I++G V+R++ + V LG + ++ +E + E+ +P DR+K +I
Sbjct: 124 GVIYTEFIDREEDIMTGIVQRLDNKFIYVSLGKIEALLPVNEQMPNESYKPHDRIKVFIT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V + D
Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEIEVPEIYDGTVELKSVAREAGDRSKISVRTDDPD 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVG+CVG +G RVQA+V EL+ EKIDIV WS D FV NAL P+ V V+++E+
Sbjct: 244 VDPVGSCVGPKGQRVQAIVNELKGEKIDIVNWSNDPVEFVANALSPSKVLDVIVNEEEKA 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
VIVP QLSLAIG+RGQN RLA++LT W IDI +E +
Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTSWKIDIKSETDARELGIYPRELEEDLDEPLFT 363
Query: 368 VDE 370
E
Sbjct: 364 EPE 366
>gi|294670565|ref|ZP_06735444.1| hypothetical protein NEIELOOT_02287 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291307690|gb|EFE48933.1| hypothetical protein NEIELOOT_02287 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 457
Score = 374 bits (960), Expect = e-101, Method: Composition-based stats.
Identities = 187/479 (39%), Positives = 285/479 (59%), Gaps = 30/479 (6%)
Query: 47 SDIRVEINPETGDISLFRLLEVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLP 102
D RVEI+ TG+ FR +V E+ + +++ ++ P I IG + +
Sbjct: 1 MDARVEIDRNTGEHRTFRRWLIVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQIE 60
Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GN 160
FGR A +AKQ+I+Q++R+AER++ +F +I+ GTVKRVE +IV+L G
Sbjct: 61 NEGFGRQAAMTAKQIILQRIRDAEREKVLNDFLATREDIVIGTVKRVERHGIIVELVPGK 120
Query: 161 SDGVIRRDETISRENLRPGDRVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPE 218
D +I RD++I REN R GDR+++ V + QV+LSRT +F+ KLF EVPE
Sbjct: 121 LDALIPRDQSIPRENFRSGDRIRALFLRVEEIGQSGRKQVILSRTSREFLAKLFEQEVPE 180
Query: 219 IYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVV 278
I +G+++++ +RDPG RAK+AV ++D IDP G C+G+RGSRV AV E+ E+ID+V+
Sbjct: 181 IADGLLEIREAARDPGHRAKIAVKANDQRIDPQGTCIGVRGSRVNAVTNEIGGERIDVVL 240
Query: 279 WSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338
WSPD+A FVINAL PA V+++V+DED ++VIV ++QL+LAIGR GQNVRLA+ LTGW
Sbjct: 241 WSPDTAQFVINALSPAEVSRIVIDEDHHAVDVIVAEDQLALAIGRGGQNVRLAADLTGWQ 300
Query: 339 IDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASI 398
++I+T E + F + ++VDE A +LV EGFA +EE+A V E+ I
Sbjct: 301 LNIMTITEAEERHAAEDAALRSLFTEHLDVDEETADVLVQEGFASLEEIAYVPSEELEEI 360
Query: 399 EGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKT 458
GFD T ++ RAR+ + + ++K+ E ++E+L ++ GID + L + GI T
Sbjct: 361 -GFDAATVDTLRNRARDAILTQAMAQEEKLEE--IAEDLRTLDGIDEDLLRDLAQAGITT 417
Query: 459 MEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517
+ LA S+D+L + + G + E +I+ AR W E ++
Sbjct: 418 RDGLAELSIDELREITGVEPG-----------------EAEKIILAARAH--WFETDEQ 457
>gi|317121853|ref|YP_004101856.1| NusA antitermination factor [Thermaerobacter marianensis DSM 12885]
gi|315591833|gb|ADU51129.1| NusA antitermination factor [Thermaerobacter marianensis DSM 12885]
Length = 486
Score = 373 bits (959), Expect = e-101, Method: Composition-based stats.
Identities = 166/344 (48%), Positives = 236/344 (68%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+E ++ + + +K ID+D +L + ++ A R +GT ++ V I+ E+G+I +
Sbjct: 2 NVEFIEALEDLERQKGIDKDTLLEAIEAALVAAFRRHFGTAQNVAVRIDRESGEIRVVAR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+VVEEV++ + QISL AR+ DP +G VV + P DFGR+A Q+AKQV++Q++REA
Sbjct: 62 RDVVEEVQDPSTQISLAEAREIDPRYQVGDVVEQEVTPRDFGRIAAQTAKQVVLQRIREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ERD Y EF + G+II+G V+RV+ NV VDLG ++ V+ E I E RPGDR+K Y
Sbjct: 122 ERDLIYEEFIAREGDIITGVVQRVQGRNVFVDLGRTETVLFPSEQIPGERYRPGDRIKVY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I +VR+ +GPQ+L+SR+HP + +LF +EVPEI++GIV++K R+PG RAK+AV + D
Sbjct: 182 IVEVRKTPKGPQILISRSHPNLIKRLFELEVPEIHDGIVEIKEAVREPGVRAKVAVDTRD 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DPVGACVG RG RVQAVV ELR E+ID++ W+ + FV NAL PA VT+V+L+ +
Sbjct: 242 ERVDPVGACVGPRGVRVQAVVAELRGERIDVIRWAEEPEQFVANALSPAKVTRVILEPET 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
VIVP QLSLAIG+ GQN RLA++LTGW IDI E +
Sbjct: 302 RVARVIVPDHQLSLAIGKEGQNARLAARLTGWKIDIHAESQAQE 345
>gi|224367580|ref|YP_002601743.1| transcription elongation factor NusA [Desulfobacterium
autotrophicum HRM2]
gi|223690296|gb|ACN13579.1| NusA [Desulfobacterium autotrophicum HRM2]
Length = 482
Score = 373 bits (958), Expect = e-101, Method: Composition-based stats.
Identities = 178/431 (41%), Positives = 278/431 (64%), Gaps = 8/431 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
++ ++ + V+ EK I+ +V++S + ++++ AA+ GT +DI V ++G++ +F+ E
Sbjct: 5 DIKRVIEQVSREKGINIEVLISTIKEAVESAAKKKLGTRADIEVHYEEKSGEVEVFQFKE 64
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV EV + +++LK + DP+ +IG + + +FGR+A QSAKQVIIQK++EAER
Sbjct: 65 VVLEVNDPDIELTLKDGQQYDPACEIGDSLGIKVDTSEFGRIAAQSAKQVIIQKMKEAER 124
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y F K GEII+G V+R++ GN+IV+LG ++ V+ E + RE+ R GDR+++YI
Sbjct: 125 NAVYENFIHKKGEIINGIVQRIDRGNIIVNLGQAEAVLTSREQMPRESYRRGDRIRAYIL 184
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
DV E RG QV+LSRTHP+F+ KLF EVPEI GIV ++ +R+ G R+K+AV S+DS
Sbjct: 185 DVLEEARGSQVILSRTHPEFVAKLFATEVPEIAEGIVTIRGTAREAGVRSKIAVSSTDSD 244
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVGACVGM+G+RVQ++V ELR EK+DIV W+PD A FV NAL PA + +V++DED
Sbjct: 245 VDPVGACVGMKGNRVQSIVQELRGEKVDIVPWNPDVAKFVCNALAPAEIARVIIDEDNRS 304
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
+EVIVP + LS+AIG+ GQNVRLA +LTGW +++++E+E S + + M
Sbjct: 305 MEVIVPDDFLSIAIGKNGQNVRLACRLTGWHLEVMSEDEYSS----ELKQGYDSLMSIPG 360
Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG----IDIT 423
V +A L GF+ ++++ ++ S+ E + RA++ LE
Sbjct: 361 VSLALAEKLFKGGFSSFKDVSLANPGDLISVTDLSESDVEALVLRAKKMLEADHTSQVED 420
Query: 424 LQKKIRELGVS 434
+++E
Sbjct: 421 GDSEVQENEPE 431
>gi|302342324|ref|YP_003806853.1| transcription termination factor NusA [Desulfarculus baarsii DSM
2075]
gi|301638937|gb|ADK84259.1| transcription termination factor NusA [Desulfarculus baarsii DSM
2075]
Length = 436
Score = 373 bits (958), Expect = e-101, Method: Composition-based stats.
Identities = 191/421 (45%), Positives = 279/421 (66%), Gaps = 4/421 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
EL ++ D VA EK +DR++++S + +++Q AAR G+ ++ V N E G++ +F E
Sbjct: 3 ELRRMIDHVAREKGLDREILISTLEEAMQSAARRKLGSKVEVDVAYNDEIGEVEVFEFKE 62
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEE+ + QI + AR DP ++G + + DFGR+A QSAKQVIIQ++++AER
Sbjct: 63 VVEELTDPDTQIGFEDARRLDPDCELGDELGIKVETADFGRIAAQSAKQVIIQRMKDAER 122
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
D + +FKD+ GEII+G V+R + G+++V+LG ++ ++ E + RE RPGDRV++Y+
Sbjct: 123 DIIFEDFKDRKGEIINGIVQRFDKGSIVVNLGRTEAILLAREQVPREGYRPGDRVRAYVL 182
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
DV+R RGPQ++LSRTHP F+ LF +EVPEI GIV ++ V+R+ GSR KL V SSD
Sbjct: 183 DVKRVSRGPQIILSRTHPGFVEALFELEVPEIAEGIVTIEGVAREAGSRTKLGVSSSDRD 242
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVGACVGM+GSRVQAVV ELR EKIDI+ + D A +V+NAL PA +++VV+DE
Sbjct: 243 VDPVGACVGMKGSRVQAVVQELRGEKIDIIAYDSDPARYVVNALAPAEISRVVVDESNNT 302
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
+EVIV E LSLAIGRRGQNVRLAS+LTGW ID+ +E + S + + + +
Sbjct: 303 MEVIVADEMLSLAIGRRGQNVRLASKLTGWKIDVKSESKYSESLRDGYRSLLD----VVG 358
Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427
V +I A L G+A + LA +++A++ G D+E A + AR+Y++
Sbjct: 359 VSDIGADTLFQAGYASADALAYANAADLAALPGIDDERAQRLIDDARDYIQRRRQASDAA 418
Query: 428 I 428
Sbjct: 419 R 419
>gi|52080267|ref|YP_079058.1| transcription elongation factor NusA [Bacillus licheniformis ATCC
14580]
gi|52785644|ref|YP_091473.1| transcription elongation factor NusA [Bacillus licheniformis ATCC
14580]
gi|319645953|ref|ZP_08000183.1| transcription elongation protein nusA [Bacillus sp. BT1B_CT2]
gi|52003478|gb|AAU23420.1| NusA [Bacillus licheniformis ATCC 14580]
gi|52348146|gb|AAU40780.1| NusA [Bacillus licheniformis ATCC 14580]
gi|317391703|gb|EFV72500.1| transcription elongation protein nusA [Bacillus sp. BT1B_CT2]
Length = 372
Score = 373 bits (958), Expect = e-101, Method: Composition-based stats.
Identities = 147/342 (42%), Positives = 225/342 (65%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + EK I +D+++ + ++ A + + ++RV++N +TG I +F +
Sbjct: 4 ELLDALTVLEKEKGISKDIIIEAIEAALISAYKRNFNQAQNVRVDLNRDTGSIRVFARKD 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +IS++ A + +P+ +G VV + P DFGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 VVDEVYDPRLEISIEDAVNINPNYIVGDVVEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF D+ +I++G V+R++ + V LG + ++ E + E +P DR+K +I
Sbjct: 124 GVIYSEFIDREEDIMTGIVQRIDNKFIYVSLGKIEALLPVAEQMPNEVYKPHDRIKVFIT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V + +
Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEIEVPEIYDGTVELKSVAREAGDRSKISVRTDNPD 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
IDPVGACVG +G RVQA+V EL+ EKIDIV WS D FV NAL P+ V V+++E+
Sbjct: 244 IDPVGACVGPKGQRVQAIVNELKGEKIDIVHWSNDPVEFVANALSPSKVLDVIVNEEDKA 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
V+VP QLSLAIG+RGQN RLA++LT W IDI +E +
Sbjct: 304 TTVVVPDYQLSLAIGKRGQNARLAAKLTSWKIDIKSETDARE 345
>gi|332184778|gb|AEE27032.1| Transcription termination protein NusA [Francisella cf. novicida
3523]
Length = 489
Score = 373 bits (957), Expect = e-101, Method: Composition-based stats.
Identities = 163/515 (31%), Positives = 296/515 (57%), Gaps = 38/515 (7%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + + VA EK I +D++ M +++ + +I V+I+ TGD R+
Sbjct: 4 ELLLVLETVANEKDISKDLLFEAMEEALAIITKKELDEHMNIEVKIDRVTGDFKADRVWH 63
Query: 68 VV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
+V E++ +Y+ ++ VA+++ ++ G V+ +P+ ++GR+A AKQ++++K++
Sbjct: 64 IVSENEDLIDYSKELYEDVAQEKGYNVKAGDVIREPVEVKEYGRIAATMAKQILMKKIKN 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVK 183
ER++ +++K+G+I+ G +KR Y +IVDLGN+ +G++ + + I+RE R GD+++
Sbjct: 124 FEREKTARFYQNKIGDIVYGEIKRATYEILIVDLGNNAEGILPKKDLIARERYRVGDKIR 183
Query: 184 SYIY--DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+ + + + V+LSR+ + LF +EVPE+ ++ + V R+PG R+K+ V
Sbjct: 184 ACVESVECDDSGKPNTVMLSRSSNTMLKALFKLEVPEVEEELINIVNVVREPGFRSKVTV 243
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP---AIVTK 298
S+D IDP GACVG+RGSR+ ++++EL EK+D+++W+ D + IN+L P A + +
Sbjct: 244 KSNDQRIDPCGACVGVRGSRIHSIMSELNGEKVDVILWNEDMVQYAINSLSPVDAADILE 303
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
V +DE+ ++++V +E LS AIG+ G NVRLAS L GW I+++++ E +
Sbjct: 304 VNVDEETNSMDIVVKQESLSKAIGKNGVNVRLASTLIGWKINVLSDAEQEEKQ----MSI 359
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
+ F++A+++D A +L+ EG +E+LA + +E+ IEGFDEE E+Q RA+ +
Sbjct: 360 VEKFVEALDIDHDFALVLIEEGIETLEDLAYLDRAELLEIEGFDEEIVDELQERAKAVIL 419
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ +++L + G+ + L +N I TMEDLA SVD+LL
Sbjct: 420 SQA------LGGKKPAQDLLDMQGMSLDLAEQLAQNNIVTMEDLAELSVDELLDI----- 468
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
+ ++Q ++I+ AR W E
Sbjct: 469 ------------VDMDEEQATNLIMQARAP--WFE 489
>gi|258516334|ref|YP_003192556.1| transcription elongation factor NusA [Desulfotomaculum acetoxidans
DSM 771]
gi|257780039|gb|ACV63933.1| NusA antitermination factor [Desulfotomaculum acetoxidans DSM 771]
Length = 381
Score = 372 bits (954), Expect = e-100, Method: Composition-based stats.
Identities = 149/362 (41%), Positives = 235/362 (64%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E L + EK I DV++ + ++ A + +G++ + RV I+ ETGD ++
Sbjct: 2 NTEFLDALRELEREKGIAVDVLIDAIEAALLSAYKRNFGSLQNARVHIDRETGDFKVYSQ 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
V EEV++ +I+L A+ DP ++G VV + + P +FGR+A Q+AKQV++Q++REA
Sbjct: 62 RTVTEEVQDDRLEITLADAQKIDPRFELGDVVENEVTPRNFGRIAAQTAKQVVVQRIREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER+ Y F + +II+G V+R+E N+ ++LG ++ ++ E + E + GDR+K+Y
Sbjct: 122 ERNIIYETFSSRESDIITGVVQRIEQKNIYIELGKTEAILTPSEQMPNETYKHGDRIKAY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I +VR+ +GPQ+ +SRTHP + +LF +EVPE+ GIV++K+V+R+ G+R+K+AV+S D
Sbjct: 182 IVEVRKTTKGPQIYVSRTHPGLLKRLFELEVPELEEGIVELKSVAREAGARSKIAVYSKD 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
++DPVGACVG +G+RVQ +V EL EKIDI+ W PD++ +V ++L PA V V + ED
Sbjct: 242 ENVDPVGACVGPKGARVQNIVNELNGEKIDIIKWDPDASKYVASSLSPAKVVAVEIWEDE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
V+VP QLSLAIG+ GQN RLA++LTG IDI +E + + + + E A
Sbjct: 302 KVARVVVPDYQLSLAIGKEGQNARLAAKLTGCKIDIKSESQMAALYPEGYGEAYDEESHA 361
Query: 366 IN 367
N
Sbjct: 362 HN 363
>gi|302389798|ref|YP_003825619.1| transcription termination factor NusA [Thermosediminibacter oceani
DSM 16646]
gi|302200426|gb|ADL07996.1| transcription termination factor NusA [Thermosediminibacter oceani
DSM 16646]
Length = 351
Score = 372 bits (954), Expect = e-100, Method: Composition-based stats.
Identities = 146/349 (41%), Positives = 239/349 (68%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+E ++ D + EK I ++++L + ++ A + YGT ++++ I+ ETG++ ++
Sbjct: 2 NIEFIEALDQIEKEKGISKEILLEAIEAALVSAYKKNYGTSQNVKINIDRETGEVKVYSQ 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
V E+V++ +ISL A+ +P + IG ++S + P FGR+A Q+AKQV++Q+++EA
Sbjct: 62 KTVKEDVKDPLLEISLLDAKKINPLVKIGDIISVEVTPKKFGRIAAQTAKQVVMQRIKEA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER+ Y EF + ++++G V+R + NVI+DLG ++ ++ +E I E PG+R+K Y
Sbjct: 122 ERNIIYEEFAGRETDLVTGVVQRFDKKNVIIDLGKTEVILPPNEQIPNETYTPGERIKVY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I +V++ +GP +++SR+HP + +LF +EVPEIY GIV++K+++R+ GSR K+AV+S D
Sbjct: 182 ILEVKKTTKGPVIIVSRSHPGLVKRLFELEVPEIYEGIVEIKSIAREAGSRTKVAVYSKD 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
++DPVGACVG +G+RVQAVV EL+ EKIDI+ WS + ++ NAL PA V V ++ED
Sbjct: 242 ENVDPVGACVGPKGTRVQAVVEELKGEKIDIIKWSKNVTEYISNALSPAKVISVDVEEDS 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354
V+V +QLSLAIG+ GQN RLA++LTGW IDI + + DS + +
Sbjct: 302 KIARVLVSDQQLSLAIGKEGQNARLAAKLTGWKIDIKSSKTDSRGDENE 350
>gi|308272453|emb|CBX29057.1| Transcription elongation protein nusA [uncultured Desulfobacterium
sp.]
Length = 432
Score = 371 bits (953), Expect = e-100, Method: Composition-based stats.
Identities = 179/429 (41%), Positives = 275/429 (64%), Gaps = 5/429 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+ ++ D V+ ++ ID++V++ + ++++ AAR YG DI ++ N E+GDI F+ +
Sbjct: 5 EIKRVVDQVSRDRGIDKNVLIKAIEEALKSAARKKYGNKIDIEIQYNEESGDIEAFQFKK 64
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVE V + QISL+ + DP +IG + + FGR+A QSAKQVIIQK+++AER
Sbjct: 65 VVETVTDSMTQISLEEGQTLDPECEIGDSLGTKMDTTAFGRIAAQSAKQVIIQKMKDAER 124
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
+ Y F ++ GEII+G V+R+E+ ++IV+LG ++G++ +E IS+E + GDR+++ +
Sbjct: 125 NAVYSSFIERKGEIINGIVQRIEHSGDIIVNLGQTEGILPINEQISKETYKRGDRIRALL 184
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
+V ++ RGPQ++LSRTH F+ LF EVPEI GIV++ R+PG RAK+AV S+DS
Sbjct: 185 LEVLQDSRGPQIVLSRTHSNFLANLFKTEVPEISEGIVKIMGAVREPGVRAKIAVSSNDS 244
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
I PVGACVGM+GSRVQ VV ELR EKIDI+ W DSA +V NAL PA + +V++DED
Sbjct: 245 DIHPVGACVGMKGSRVQNVVQELRGEKIDIIPWHVDSAKYVCNALAPAEIIRVIIDEDNH 304
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+EVIVP E LS+AIG+RGQNVRLAS+LTGW +D+ +E + +
Sbjct: 305 AMEVIVPDESLSIAIGKRGQNVRLASKLTGWNLDVQSESHYNE----VLKNGYDSLVSLP 360
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426
V + + L+ +GF V+E++ S++ I+G +E A ++ A E + + +
Sbjct: 361 GVGINLVNSLIEKGFTSVDEISNASASDLMQIKGIAKEKAEKLINSATEAISKDEDKVSA 420
Query: 427 KIRELGVSE 435
+ +
Sbjct: 421 EEENPDIEN 429
>gi|167037624|ref|YP_001665202.1| transcription elongation factor NusA [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|307264912|ref|ZP_07546474.1| transcription termination factor NusA [Thermoanaerobacter wiegelii
Rt8.B1]
gi|320116039|ref|YP_004186198.1| transcription termination factor NusA [Thermoanaerobacter brockii
subsp. finnii Ako-1]
gi|326389438|ref|ZP_08211005.1| NusA antitermination factor [Thermoanaerobacter ethanolicus JW 200]
gi|166856458|gb|ABY94866.1| NusA antitermination factor [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|306920170|gb|EFN50382.1| transcription termination factor NusA [Thermoanaerobacter wiegelii
Rt8.B1]
gi|319929130|gb|ADV79815.1| transcription termination factor NusA [Thermoanaerobacter brockii
subsp. finnii Ako-1]
gi|325994443|gb|EGD52868.1| NusA antitermination factor [Thermoanaerobacter ethanolicus JW 200]
Length = 346
Score = 371 bits (952), Expect = e-100, Method: Composition-based stats.
Identities = 154/345 (44%), Positives = 227/345 (65%), Gaps = 1/345 (0%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E ++ +++ EK I +D + + ++ A + YGT ++++ ++ ETGD+ ++
Sbjct: 2 NAEFIEALNSICEEKGIPKDTMFEAIEAALVSAYKKNYGTSQNVKIVMDRETGDVKVYAQ 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVEEV N +ISL+ AR + IG +V + P +FGR+A Q+AKQV+IQ++REA
Sbjct: 62 KTVVEEVYNDLLEISLEEARKINKKYQIGDIVDIEVTPKNFGRIAAQNAKQVVIQRIREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER+ Y EF K E+++G V RV+ NV+++LG + ++ E I E PGDRVK Y
Sbjct: 122 ERNVIYEEFLAKETEVVTGIVTRVDKKNVLINLGRVEAILGPSEQIPGETFAPGDRVKVY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I +V++ +GPQ+L+SR+HP + +LF +E PEI GIV++++++R+ GSR K+AVFS D
Sbjct: 182 IVEVKKTTKGPQILISRSHPGLVKRLFELESPEIQQGIVEIRSIAREAGSRTKMAVFSRD 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304
++DPVGACVG +G+RVQAVV EL+ EKIDIV WS F++NAL PA + + DE
Sbjct: 242 ENVDPVGACVGYKGARVQAVVNELKGEKIDIVKWSSKPQEFIMNALSPAKALSIEILDEK 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
VIVP QLSLAIG+ GQN RLA++LTGW IDI +E
Sbjct: 302 EKVARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESMVKS 346
>gi|289578389|ref|YP_003477016.1| transcription termination factor NusA [Thermoanaerobacter italicus
Ab9]
gi|297544665|ref|YP_003676967.1| transcription termination factor NusA [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|289528102|gb|ADD02454.1| transcription termination factor NusA [Thermoanaerobacter italicus
Ab9]
gi|296842440|gb|ADH60956.1| transcription termination factor NusA [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 346
Score = 370 bits (949), Expect = e-100, Method: Composition-based stats.
Identities = 154/345 (44%), Positives = 225/345 (65%), Gaps = 1/345 (0%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E ++ +++ EK I +D + + ++ A + YG+ + ++ ++ ETGD+ ++
Sbjct: 2 NTEFIEALNSICEEKGIPKDTMFEAIEAALVSAYKKNYGSSQNAKIVMDRETGDVKVYAQ 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVEEV N +ISL+ AR + IG +V + P +FGR+A Q+AKQV+IQ++REA
Sbjct: 62 KTVVEEVYNDLLEISLEEARKINKKYQIGDIVDIEVTPKNFGRIAAQTAKQVVIQRIREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER+ Y EF K E+I+G V R + NV+++LG + ++ E I E PGDRVK Y
Sbjct: 122 ERNVIYEEFLSKETEVITGIVTRADKKNVLINLGRVEAILGPAEQIPGETFAPGDRVKVY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I +V++ +GPQ+L+SR+HP + +LF +E PEI GIV++++++R+ GSR K+AVFS D
Sbjct: 182 IVEVKKTTKGPQILISRSHPGLVKRLFELESPEIQQGIVEIRSIAREAGSRTKMAVFSRD 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304
++DPVGACVG +G+RVQAVV EL+ EKIDIV WS F+INAL PA + + DE
Sbjct: 242 ENVDPVGACVGYKGARVQAVVNELKGEKIDIVKWSSKPQEFIINALSPARALSIEILDEK 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
VIVP QLSLAIG+ GQN RLA++LTGW IDI +E
Sbjct: 302 EKVARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESMVKS 346
>gi|254375031|ref|ZP_04990511.1| transcription elongation factor [Francisella novicida GA99-3548]
gi|151572749|gb|EDN38403.1| transcription elongation factor [Francisella novicida GA99-3548]
Length = 489
Score = 370 bits (949), Expect = e-100, Method: Composition-based stats.
Identities = 161/515 (31%), Positives = 296/515 (57%), Gaps = 38/515 (7%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + + VA EK I +D++ M +++ + +I V+I+ TGD R+
Sbjct: 4 ELLLVLETVANEKDISKDLLFEAMEEALAIITKKELDEHMNIEVKIDRVTGDFKADRVWH 63
Query: 68 VV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
+V E++ +Y+ ++ VA+++ ++ G V+ +P+ ++GR+A AKQ++++K++
Sbjct: 64 IVSEDEDLIDYSKELYEDVAQEKGYNVKAGDVIREPVEVKEYGRIAATMAKQILMKKIKN 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVK 183
ER++ +++K+G+I+ G +KR Y ++VDLGN+ +G++ + + I+RE R GD+++
Sbjct: 124 FEREKSARFYQNKIGDIVYGEIKRATYEILVVDLGNNAEGILPKKDLIARERYRVGDKIR 183
Query: 184 SYIY--DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+ + + + ++LSR+ + LF +EVPE+ ++ + V R+PG R+K+ V
Sbjct: 184 ACVEAVESDESGKLSTIMLSRSSNTMLKALFKLEVPEVEEELINIVNVVREPGFRSKVTV 243
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP---AIVTK 298
S+D IDP GACVG+RGSR+ ++++EL EK+D+++W+ D + IN+L P A + +
Sbjct: 244 KSNDQRIDPCGACVGVRGSRIHSIMSELNGEKVDVILWNEDMVQYAINSLSPVDAADILE 303
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
V +DE+ ++++V +E LS AIG+ G NVRLAS L GW I+++++ E +
Sbjct: 304 VNVDEETNSMDIVVKQESLSKAIGKNGVNVRLASSLIGWKINVLSDAEQEEKQ----MSI 359
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
+ F++A+++D A +L+ EG +E+LA + +E+ IEGFDEE E+Q RA+ +
Sbjct: 360 VEKFVEALDIDHDFALVLIEEGIETLEDLAYLDRAELLEIEGFDEEIVDELQERAKAVIL 419
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ +++L + G+ + L +N I TMEDLA SVD+LL
Sbjct: 420 SQA------LGGKKPAQDLLDMQGMSLDLAEQLAQNNIVTMEDLAELSVDELLDI----- 468
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
+ ++Q ++I+ AR W E
Sbjct: 469 ------------VDMDEEQATNLIMQARAP--WFE 489
>gi|118498223|ref|YP_899273.1| transcription elongation factor NusA [Francisella tularensis subsp.
novicida U112]
gi|194324407|ref|ZP_03058180.1| transcription termination factor NusA [Francisella tularensis
subsp. novicida FTE]
gi|208780250|ref|ZP_03247592.1| transcription termination factor NusA [Francisella novicida FTG]
gi|118424129|gb|ABK90519.1| transcription elongation factor [Francisella novicida U112]
gi|194321472|gb|EDX18957.1| transcription termination factor NusA [Francisella tularensis
subsp. novicida FTE]
gi|208743899|gb|EDZ90201.1| transcription termination factor NusA [Francisella novicida FTG]
gi|332678959|gb|AEE88088.1| Transcription termination protein NusA [Francisella cf. novicida
Fx1]
Length = 489
Score = 370 bits (949), Expect = e-100, Method: Composition-based stats.
Identities = 161/515 (31%), Positives = 296/515 (57%), Gaps = 38/515 (7%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + + VA EK I +D++ M +++ + +I V+I+ TGD R+
Sbjct: 4 ELLLVLETVANEKDISKDLLFEAMEEALAIITKKELDEHMNIEVKIDRVTGDFKADRVWH 63
Query: 68 VV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
+V E++ +Y+ ++ VA+++ ++ G V+ +P+ ++GR+A AKQ++++K++
Sbjct: 64 IVSEDEDLIDYSKELYEDVAQEKGYNVKAGDVIREPVEVKEYGRIAATMAKQILMKKIKN 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVK 183
ER++ +++K+G+I+ G +KR Y ++VDLGN+ +G++ + + I+RE R GD+++
Sbjct: 124 FEREKSARFYQNKIGDIVYGEIKRATYEILVVDLGNNAEGILPKKDLIARERYRVGDKIR 183
Query: 184 SYIY--DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+ + + + ++LSR+ + LF +EVPE+ ++ + V R+PG R+K+ V
Sbjct: 184 ACVEAVESDESGKPNTIMLSRSSNTMLKALFKLEVPEVEEELINIVNVVREPGFRSKVTV 243
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP---AIVTK 298
S+D IDP GACVG+RGSR+ ++++EL EK+D+++W+ D + IN+L P A + +
Sbjct: 244 KSNDQRIDPCGACVGVRGSRIHSIMSELNGEKVDVILWNEDMVQYAINSLSPVDAADILE 303
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
V +DE+ ++++V +E LS AIG+ G NVRLAS L GW I+++++ E +
Sbjct: 304 VNVDEETNSMDIVVKQESLSKAIGKNGVNVRLASSLIGWKINVLSDAEQEEKQ----MSI 359
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
+ F++A+++D A +L+ EG +E+LA + +E+ IEGFDEE E+Q RA+ +
Sbjct: 360 VEKFVEALDIDHDFALVLIEEGIETLEDLAYLDRAELLEIEGFDEEIVDELQERAKAVIL 419
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ +++L + G+ + L +N I TMEDLA SVD+LL
Sbjct: 420 SQA------LGGKKPAQDLLDMQGMSLDLAEQLAQNNIVTMEDLAELSVDELLDI----- 468
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
+ ++Q ++I+ AR W E
Sbjct: 469 ------------VDMDEEQATNLIMQARAP--WFE 489
>gi|134299807|ref|YP_001113303.1| transcription elongation factor NusA [Desulfotomaculum reducens
MI-1]
gi|134052507|gb|ABO50478.1| NusA antitermination factor [Desulfotomaculum reducens MI-1]
Length = 384
Score = 370 bits (949), Expect = e-100, Method: Composition-based stats.
Identities = 159/370 (42%), Positives = 241/370 (65%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E L+ + EK I DV+L + ++ A + +G++ + RV I+ +TGD ++
Sbjct: 2 NSEFLEALRDLEKEKGIAVDVLLEAIEAALLSAYKRNFGSLQNARVHIDRDTGDYKVYSQ 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVEEVE+ +ISL+ AR DP ++ VV D + P +FGR+A Q+AKQV++Q++REA
Sbjct: 62 RAVVEEVEDDRVEISLEDARKIDPRFNLEDVVEDEVTPRNFGRIAAQTAKQVVVQRIREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER+ + EF ++ G+I++G V+R+E NV ++LG ++ ++ E I E+ R GDR+K+Y
Sbjct: 122 ERNIIFEEFSNREGDILTGIVQRIENKNVFIELGKTEAILTPSEQIPNEDYRHGDRLKTY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I +VR+ +GPQ+L+SRTHP + +LF +EVPE+ G+V++K+++R+ G R+K+AV+S D
Sbjct: 182 IVEVRKTTKGPQILVSRTHPGLLKRLFELEVPELQEGVVELKSIAREAGYRSKIAVYSKD 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+IDPVGACVG +G RVQ +VTEL EKIDI+ W+ D + +V ++L PA V V + ED
Sbjct: 242 ENIDPVGACVGPKGMRVQNIVTELNGEKIDIIKWNQDPSKYVASSLSPAKVVAVEVWEDE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
VIVP QLSLAIG+ GQN RLA++LTGW IDI +E + + + E F
Sbjct: 302 KVARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQMTDIYPEYDAEENDGFSTD 361
Query: 366 INVDEIIAHL 375
N E
Sbjct: 362 DNYLETFEDE 371
>gi|115372730|ref|ZP_01460036.1| NusA protein [Stigmatella aurantiaca DW4/3-1]
gi|310823422|ref|YP_003955780.1| transcription termination factor NusA [Stigmatella aurantiaca
DW4/3-1]
gi|115370211|gb|EAU69140.1| NusA protein [Stigmatella aurantiaca DW4/3-1]
gi|309396494|gb|ADO73953.1| Transcription termination factor NusA [Stigmatella aurantiaca
DW4/3-1]
Length = 565
Score = 369 bits (947), Expect = e-100, Method: Composition-based stats.
Identities = 195/496 (39%), Positives = 286/496 (57%), Gaps = 47/496 (9%)
Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70
+ D VA +K I+R V+++ + D+++ AA+ +G ++ + + E G + LF+ + VVE
Sbjct: 13 LVLDQVAKDKGIERSVLIATLEDAMKTAAKKHFGQDRNLEAKYDVEKGVVELFQAITVVE 72
Query: 71 EVENYT---CQISLKVARDRDPSIDIGGVVSDPLPPMD---------------------- 105
E+ + QI++ A + ++ G + + D
Sbjct: 73 EIVDPVQAVNQITMAEAHKKGMEVEPGDELVFQIMYRDEDAAEAKAQDDQYGDILRLKTF 132
Query: 106 ---FGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSD 162
FGR+A Q+AKQVI+Q+ R+AER+ + E+KD+ EI++G +R E GN+IVDLG ++
Sbjct: 133 RRGFGRIAAQTAKQVILQRTRDAERENVFNEYKDRKNEIVTGIARRFERGNIIVDLGRAE 192
Query: 163 GVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNG 222
V+ E + RE RPGDRV++Y+ DV RE +GPQ++LSR + KLF MEVPEI G
Sbjct: 193 AVLPVREQVPRETYRPGDRVQAYVLDVLRESKGPQIVLSRASVNLLTKLFEMEVPEIAEG 252
Query: 223 IVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPD 282
IV ++A +R+PG RAK+AV S DS +DPVGACVGM+GSRVQAVV ELR EKIDIV + D
Sbjct: 253 IVVIEAAAREPGGRAKIAVSSRDSDVDPVGACVGMKGSRVQAVVQELRGEKIDIVPFDED 312
Query: 283 SATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342
A+FV +AL PA V++V++DE +E+IVP +QLSLAIGRRGQNVRLA+QLTGW +DI
Sbjct: 313 PASFVCSALAPAEVSRVIIDEANHAMELIVPDDQLSLAIGRRGQNVRLAAQLTGWKLDIN 372
Query: 343 TEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD 402
+E R+ V+E++ L A GF +++A ++ I G D
Sbjct: 373 SESRVREMREFANRSLGSLP----GVNEMLIETLYAHGFRQAKDVAEASPEVLSQIPGLD 428
Query: 403 EETAVEIQGRAREY------------LEGIDITLQKKIR---ELGVSEELCSIPGIDSKI 447
+Q AR+ E + + R EL SE + + G+ K
Sbjct: 429 PTRLPAMQESARKQMVDDAAELSRMDHEREAARIAEARRHPDELSQSERMARVRGLGEKT 488
Query: 448 KVALGENGIKTMEDLA 463
AL +G KT+ED+A
Sbjct: 489 IEALIVSGYKTVEDIA 504
>gi|328953957|ref|YP_004371291.1| NusA antitermination factor [Desulfobacca acetoxidans DSM 11109]
gi|328454281|gb|AEB10110.1| NusA antitermination factor [Desulfobacca acetoxidans DSM 11109]
Length = 442
Score = 368 bits (946), Expect = e-100, Method: Composition-based stats.
Identities = 182/419 (43%), Positives = 282/419 (67%), Gaps = 5/419 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-IRVEINPETGDISLFRLL 66
+L ++ + V+ +K ID+D++L+ + ++++ AA+ YG D I V + +TG+I +F+
Sbjct: 4 DLRRLIEQVSRDKGIDKDLLLNTVMEAVRSAAKKRYGAKQDNIEVGFSEDTGEIEVFQFK 63
Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
EVV+EV + QI+L AR DP D+G + L FGR+A QSAKQVIIQ +R+AE
Sbjct: 64 EVVDEVIDSDRQITLPEARQLDPECDLGDSLGIKLDAGSFGRIAAQSAKQVIIQGMRDAE 123
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
RD + ++KD+ GEII+G V+R + +IV+LG ++ ++ E + RE R GDR+++Y+
Sbjct: 124 RDIVFEDYKDRKGEIINGIVQRQDKSGIIVNLGRTEALLPITEQVPRELYRQGDRIRAYV 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
DV+R+ +GPQ++LSR F++ LF EVPEI GIV++ AV+R+PGSR+K+AV S D+
Sbjct: 184 VDVKRQTKGPQIILSRVDENFLIMLFEAEVPEIQEGIVKIMAVAREPGSRSKIAVASRDA 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
+DPVGACVGM+GSRVQ +V ELR EKIDI+ W+PD A FV AL PA V+++++DED
Sbjct: 244 DVDPVGACVGMKGSRVQNIVQELRGEKIDIIPWNPDPAKFVTQALAPAEVSRIIIDEDSQ 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+E+IVP +QL LAIG+RGQNVRLA++LTGW ID+ +E + S + ++ + +
Sbjct: 304 NMEIIVPDDQLFLAIGKRGQNVRLAAKLTGWKIDVKSESKYSKSMKEGYLSLLKIP---- 359
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425
V E+ A L GF +E+A ++E+ + G +E+ A +I G A+ ++ + +
Sbjct: 360 GVGEMTASALYEAGFTSAKEVAEANLAELMQVPGINEKKATQILGAAQTLMKASEDNPE 418
>gi|116748667|ref|YP_845354.1| transcription elongation factor NusA [Syntrophobacter fumaroxidans
MPOB]
gi|116697731|gb|ABK16919.1| NusA antitermination factor [Syntrophobacter fumaroxidans MPOB]
Length = 449
Score = 368 bits (946), Expect = e-100, Method: Composition-based stats.
Identities = 179/429 (41%), Positives = 264/429 (61%), Gaps = 4/429 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
EL ++ D V+ EK IDR ++ + ++I+ A + YGT D+ V N E G++ F+ E
Sbjct: 4 ELKRLIDQVSREKGIDRQTLIHTLEEAIKSAIKKKYGTRQDLDVTYNEEYGELEAFQFKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVE V + Q+SL A DP +IG + + GR+A QSAKQVIIQK+++AER
Sbjct: 64 VVETVTDPDKQVSLAEAIKLDPESEIGDELGIRMDTETLGRIAAQSAKQVIIQKMKDAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y EFK + GEI G V+RV+ ++V++G ++ ++ E I RE R GDRV++Y+
Sbjct: 124 EVVYEEFKSRKGEIAHGVVQRVDKSGIVVNMGQAEAILPPKEQIPREVFRQGDRVRAYVL 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
DV++ +GPQ++LSRTHP F+++LFH EVPEI GIV + + +R+PGSRAK+AV S +
Sbjct: 184 DVKKISKGPQIVLSRTHPHFLIQLFHGEVPEIVEGIVSIISAAREPGSRAKIAVISKATD 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVGACVGM+G+RVQ VV ELR EKIDIV W+ D A FV+NAL PAI++KV++D+
Sbjct: 244 VDPVGACVGMKGTRVQNVVQELRGEKIDIVPWNMDPAKFVVNALAPAIISKVIIDQANRS 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
+EVIVP +QLSLAIG++GQNVRLAS+LT W ID+ E ++ Q ++
Sbjct: 304 MEVIVPDDQLSLAIGKKGQNVRLASRLTNWRIDVKNESR----HERQKQTGYQSMLRING 359
Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427
+ +A L G ++E SE+ + E++ A + + T +
Sbjct: 360 LTAQLADRLYEAGITSLQEFIDASGSELEELTQLAGPVIEEMKAEAGRLVLENETTAEAA 419
Query: 428 IRELGVSEE 436
++
Sbjct: 420 SEGNETQQD 428
>gi|147677601|ref|YP_001211816.1| transcription elongation factor NusA [Pelotomaculum
thermopropionicum SI]
gi|146273698|dbj|BAF59447.1| transcription elongation factor [Pelotomaculum thermopropionicum
SI]
Length = 360
Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats.
Identities = 155/359 (43%), Positives = 236/359 (65%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E L+ + EK I DV+L + ++ A + +G++ + RV I+ ETG+ ++
Sbjct: 2 NTEFLEALKDLEREKGIAVDVLLEAIEAALLSAYKRNFGSLQNARVHIDRETGEFKVYTQ 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
V E VE+ +I +K AR +P+ G +V + P DFGR+A Q+AKQV++Q++REA
Sbjct: 62 RTVSEHVEDPRQEIDIKEARAINPNYAPGDIVESEVTPRDFGRIAAQTAKQVVVQRIREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER+ Y EF ++ G+I++G V+RVE NV ++LG ++ ++ E I E R GDR+K+Y
Sbjct: 122 ERNIIYEEFANREGDIVTGIVQRVEQKNVYIELGKTEAILAPSEQIPGEEYRQGDRIKTY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I +VR+ +GPQ+L+SRTHP + +L MEVPE+ GIV++K ++R+ G+R+K+AV+S D
Sbjct: 182 IVEVRKTTKGPQILVSRTHPGLLKRLLEMEVPELQEGIVELKGIAREAGARSKIAVYSKD 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
++DPVGACVG +G RVQ +V+EL EKIDI+ W+PD + FV ++L PA V V + E+
Sbjct: 242 ENVDPVGACVGPKGMRVQNIVSELNGEKIDIIKWNPDPSKFVASSLSPAKVIAVEIWEEE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
VIVP QLSLAIG+ GQN RLA++LTGW IDI +E + +++NE +
Sbjct: 302 KVARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSETQMREIYPEEYNELFSDEYE 360
>gi|167040285|ref|YP_001663270.1| transcription elongation factor NusA [Thermoanaerobacter sp. X514]
gi|300914369|ref|ZP_07131685.1| transcription termination factor NusA [Thermoanaerobacter sp. X561]
gi|307724395|ref|YP_003904146.1| transcription termination factor NusA [Thermoanaerobacter sp. X513]
gi|166854525|gb|ABY92934.1| NusA antitermination factor [Thermoanaerobacter sp. X514]
gi|300889304|gb|EFK84450.1| transcription termination factor NusA [Thermoanaerobacter sp. X561]
gi|307581456|gb|ADN54855.1| transcription termination factor NusA [Thermoanaerobacter sp. X513]
Length = 346
Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats.
Identities = 153/345 (44%), Positives = 227/345 (65%), Gaps = 1/345 (0%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E ++ +++ EK I +D + + ++ A + YGT ++++ ++ ETGD+ ++
Sbjct: 2 NAEFIEALNSICEEKGIPKDTMFEAIEAALVSAYKKNYGTSQNVKIVMDRETGDVKVYAQ 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVEEV N +ISL+ AR + IG +V + P +FGR+A Q+AKQV+IQ++REA
Sbjct: 62 KTVVEEVYNDLLEISLEEARKINKKYQIGDIVDIEVTPKNFGRIAAQNAKQVVIQRIREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER+ Y EF K E+++G V +V+ NV+++LG + ++ E I E PGDRVK Y
Sbjct: 122 ERNVIYEEFLAKETEVVTGIVTKVDKKNVLINLGRVEAILSPAEQIPGETFAPGDRVKVY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I +V++ +GPQ+L+SR+HP + +LF +E PEI GIV++++++R+ GSR K+AVFS D
Sbjct: 182 IVEVKKTTKGPQILISRSHPGLVKRLFELESPEIQQGIVEIRSIAREAGSRTKMAVFSRD 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304
++DPVGACVG +G+RVQAVV EL+ EKIDIV WS F++NAL PA + + DE
Sbjct: 242 ENVDPVGACVGYKGARVQAVVNELKGEKIDIVKWSSKPQEFIMNALSPAKALSIEILDEK 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
VIVP QLSLAIG+ GQN RLA++LTGW IDI +E
Sbjct: 302 EKVARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESMVKS 346
>gi|297569836|ref|YP_003691180.1| transcription termination factor NusA [Desulfurivibrio alkaliphilus
AHT2]
gi|296925751|gb|ADH86561.1| transcription termination factor NusA [Desulfurivibrio alkaliphilus
AHT2]
Length = 449
Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats.
Identities = 187/407 (45%), Positives = 270/407 (66%), Gaps = 5/407 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
EL +I D ++ +K I+RD+++ + +++ AA+ YG +I N E G+I LF+
Sbjct: 4 ELKRIIDQISRDKGINRDLLIEAIEEAVMSAAKKKYGHRREIEARYNDEYGEIELFQFRT 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM-DFGRVAVQSAKQVIIQKVREAE 126
VV+EV + +ISL A++ DP +++G + + D GR+A QSAKQVIIQK++EAE
Sbjct: 64 VVDEVTDEQTEISLAEAKELDPEVEMGDELGSKMDSAADLGRIAAQSAKQVIIQKMKEAE 123
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
D Y FK++ G+I++G V+R E GN+IV+LG +D ++ E + R++ R GDR+++Y+
Sbjct: 124 SDVVYDLFKERKGDIVNGIVQRFERGNMIVNLGRTDAILPSREQMPRKSYRQGDRIRAYL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
DVR+ + PQ++LSRT +F+ KLF MEVPEI GIV+V V+R+PGSRAK+AV S++S
Sbjct: 184 LDVRQSSKEPQLVLSRTCNEFLTKLFTMEVPEIAEGIVKVMGVAREPGSRAKIAVSSTES 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
+DPVGACVGM+GSRVQ VV EL+ EKIDIV WSPD A +V NAL PA V+ VV+DE+
Sbjct: 244 DVDPVGACVGMKGSRVQNVVQELQGEKIDIVPWSPDPARYVSNALAPAQVSMVVVDEENN 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+ V+VP +QLSLAIGR+GQNVRLAS L GW ID+ +E S + ++ F Q +
Sbjct: 304 TLLVVVPDDQLSLAIGRQGQNVRLASALLGWRIDVKSETRYSRSIEEGF----QSLLDVA 359
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413
+ E A L G + ELA +E+A+ G +E A + A
Sbjct: 360 GISEKQAEKLYDGGISSAAELAAADPAEVATTLGLEEPEAQALVSAA 406
>gi|94272101|ref|ZP_01292067.1| Transcription termination factor NusA [delta proteobacterium
MLMS-1]
gi|93450237|gb|EAT01518.1| Transcription termination factor NusA [delta proteobacterium
MLMS-1]
Length = 476
Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats.
Identities = 185/410 (45%), Positives = 270/410 (65%), Gaps = 7/410 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
EL +I D + +K IDR++++ + +++ AA+ YG ++ N E G++ LF+
Sbjct: 4 ELKRIIDQICRDKGIDRELLIEAIEEAVMSAAKKRYGMRREVEARFNDELGEVELFQFRA 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM-DFGRVAVQSAKQVIIQKVREAE 126
VV+EVE+ QIS A+ DP +++G + + + D GR+A QSAKQVIIQK++EAE
Sbjct: 64 VVDEVEDEQTQISYADAKALDPEVEMGDELGSKMESVADLGRIAAQSAKQVIIQKMKEAE 123
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
D + FKD+ G+I++G V+R E GN+IV+LG +D ++ E + R++ R GDR+++Y+
Sbjct: 124 SDVVFDMFKDRKGDIVNGIVQRFERGNMIVNLGRTDAILPSREQMPRKSYRQGDRIRAYL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
DVR+ + PQ++LSRT +F++KLF +EVPE+ GIV + V+R+PGSRAK+AV S+++
Sbjct: 184 LDVRQSSKDPQLILSRTCNEFLIKLFALEVPEVAEGIVNILGVAREPGSRAKIAVSSTET 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
+DPVGACVGM+GSRVQ VV EL+ EKIDIV WSPD A FV NAL PA V+ VV+DE+
Sbjct: 244 DVDPVGACVGMKGSRVQNVVQELQGEKIDIVPWSPDPARFVSNALSPAQVSLVVVDEESK 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+ V+VP +QLSLAIGR+GQNVRLAS L W ID+ +E + + + Q ++
Sbjct: 304 TLLVVVPDDQLSLAIGRQGQNVRLASALLDWRIDVKSESRYARFIE----DGFQSLLELA 359
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD--EETAVEIQGRAR 414
+ E A LL G+ V ELA E+ I+GFD EE + AR
Sbjct: 360 GMTEKRAELLAENGYGSVTELAAASAEELQEIDGFDLGEEDTEALLVVAR 409
Score = 38.8 bits (89), Expect = 2.4, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 15/72 (20%)
Query: 435 EELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTP 494
+ L + G+ K L ENG ++ +LA S ++L
Sbjct: 353 QSLLELAGMTEKRAELLAENGYGSVTELAAASAEELQEID---------------GFDLG 397
Query: 495 KDQVESMIIHAR 506
++ E++++ AR
Sbjct: 398 EEDTEALLVVAR 409
>gi|256750788|ref|ZP_05491673.1| NusA antitermination factor [Thermoanaerobacter ethanolicus CCSD1]
gi|256750371|gb|EEU63390.1| NusA antitermination factor [Thermoanaerobacter ethanolicus CCSD1]
Length = 346
Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats.
Identities = 151/345 (43%), Positives = 226/345 (65%), Gaps = 1/345 (0%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E ++ +++ EK I +D + + ++ A + YG+ + ++ ++ ETGD+ ++
Sbjct: 2 NTEFIEALNSICEEKGIPKDTMFEAIEAALVSAYKKNYGSSQNAKIVMDRETGDVKVYAQ 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVEEV N +ISL+ AR + IG +V + P +FGR+A Q+AKQV+IQ++R+A
Sbjct: 62 KTVVEEVYNDLLEISLEEARKINKKYQIGDIVDIEVTPKNFGRIAAQTAKQVVIQRIRKA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER+ Y EF K E+++G V +V+ NV+++LG + ++ E I E PGDRVK Y
Sbjct: 122 ERNVIYEEFLSKETEVVTGIVTKVDKKNVLINLGRVEAILSPAEQIPGETFAPGDRVKVY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I +V++ +GPQ+L+SR+HP + +LF +E PEI GIV++++++R+ GSR K+AVFS D
Sbjct: 182 IVEVKKTTKGPQILISRSHPGLVKRLFELESPEIQQGIVEIRSIAREAGSRTKMAVFSRD 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304
++DPVGACVG +G+RVQAVV EL+ EKIDIV WS F++NAL PA + + DE
Sbjct: 242 ENVDPVGACVGYKGARVQAVVNELKGEKIDIVKWSSKPQEFIMNALSPAKALSIEILDEK 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
VIVP QLSLAIG+ GQN RLA++LTGW IDI +E
Sbjct: 302 EKVARVIVPDYQLSLAIGKEGQNARLAAKLTGWRIDIKSESMVKS 346
>gi|304437178|ref|ZP_07397139.1| transcription termination factor NusA [Selenomonas sp. oral taxon
149 str. 67H29BP]
gi|304369840|gb|EFM23504.1| transcription termination factor NusA [Selenomonas sp. oral taxon
149 str. 67H29BP]
Length = 379
Score = 367 bits (943), Expect = 2e-99, Method: Composition-based stats.
Identities = 158/363 (43%), Positives = 232/363 (63%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E LQ +AYEK ID +++ + ++ A R +G ++R+ ++ ETG +F +
Sbjct: 16 EFLQTLKELAYEKGIDEELLFETIEAALISAYRRNFGAAQNVRISLSRETGAFHVFAIKT 75
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EVE+ +I L AR +P +G VV + P +FGR+A Q+AKQV++Q++REAER
Sbjct: 76 VVDEVESDVTEIGLAQARAINPDYVVGDVVEIEMTPANFGRIAAQTAKQVVMQRLREAER 135
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y E+ ++ EI++G V+RVE NV VD+G ++ V+ E + E GD V++YI
Sbjct: 136 GIVYEEYMNRSSEIVTGIVQRVEGHNVFVDIGRAEAVLMATEQLPNETYNYGDTVRAYII 195
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
+V+R RGPQ++LSRTHP + KLF ++VPEI G+V++++++R+ GSR+K+AV+SS+
Sbjct: 196 EVKRTSRGPQIMLSRTHPGLLKKLFELQVPEIQEGVVEIRSIAREAGSRSKVAVWSSEER 255
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DP+GACVG RVQAVV EL EKIDIV WS D AT++ N+L PA V V ++E
Sbjct: 256 VDPIGACVGPHYMRVQAVVDELAGEKIDIVKWSDDPATYIANSLNPAKVISVAVNEAEKI 315
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + Q D
Sbjct: 316 SRVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSETQARETEQADGAPTDAPSEDQAT 375
Query: 368 VDE 370
+E
Sbjct: 376 PEE 378
>gi|238927232|ref|ZP_04658992.1| transcription elongation factor NusA [Selenomonas flueggei ATCC
43531]
gi|238884907|gb|EEQ48545.1| transcription elongation factor NusA [Selenomonas flueggei ATCC
43531]
Length = 379
Score = 367 bits (942), Expect = 3e-99, Method: Composition-based stats.
Identities = 159/366 (43%), Positives = 233/366 (63%)
Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64
N E LQ +AYEK ID +++ + ++ A R +G ++R+ ++ ETG +F
Sbjct: 13 NGKEFLQTLKELAYEKGIDEELLFETIEAALISAYRRNFGAAQNVRISLSRETGAFHVFA 72
Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
+ VV+EVE+ +ISL AR +P +G VV + P +FGR+A Q+AKQV++Q++RE
Sbjct: 73 IKTVVDEVESDVTEISLARARAINPDYTVGDVVEIEMTPANFGRIAAQTAKQVVMQRLRE 132
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER Y E+ ++ EI++G V+R+E NV VD+G ++ V+ E + E GD V++
Sbjct: 133 AERGIVYEEYMNRSSEIVTGIVQRIEGHNVFVDIGRAEAVLMATEQLPTETYNYGDTVRA 192
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI +V+R RGPQ++LSRTHP + KLF ++VPEI G+V++++++R+ GSR+K+AV+SS
Sbjct: 193 YIIEVKRTSRGPQIMLSRTHPGLLKKLFELQVPEIQEGVVEIRSIAREAGSRSKVAVWSS 252
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
+ +DP+GACVG RVQAVV EL EKIDIV WS D AT++ N+L PA V V ++E
Sbjct: 253 EERVDPIGACVGPHYMRVQAVVDELAGEKIDIVKWSDDPATYIANSLNPAKVISVAVNEA 312
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + Q D
Sbjct: 313 EKISRVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSETQAREEEQADGATTDAPSED 372
Query: 365 AINVDE 370
E
Sbjct: 373 QAAAGE 378
>gi|94263057|ref|ZP_01286876.1| Transcription termination factor NusA [delta proteobacterium
MLMS-1]
gi|93456600|gb|EAT06708.1| Transcription termination factor NusA [delta proteobacterium
MLMS-1]
Length = 472
Score = 366 bits (940), Expect = 5e-99, Method: Composition-based stats.
Identities = 184/410 (44%), Positives = 269/410 (65%), Gaps = 7/410 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
EL +I D + +K IDR++++ + +++ AA+ YG ++ N E G++ LF+
Sbjct: 4 ELKRIIDQICRDKGIDRELLIEAIEEAVMSAAKKRYGMRREVEARFNDELGEVELFQFRA 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM-DFGRVAVQSAKQVIIQKVREAE 126
VV+EV + QIS A+ DP +++G + + + D GR+A QSAKQVIIQK++EAE
Sbjct: 64 VVDEVADEQTQISYADAKALDPEVEMGDELGSKMESVADLGRIAAQSAKQVIIQKMKEAE 123
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
D + FKD+ G+I++G V+R E GN+IV+LG +D ++ E + R++ R GDR+++Y+
Sbjct: 124 SDVVFDMFKDRKGDIVNGIVQRFERGNMIVNLGRTDAILPSREQMPRKSYRQGDRIRAYL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
DVR+ + PQ++LSRT +F++KLF +EVPE+ GIV + V+R+PGSRAK+AV S+++
Sbjct: 184 LDVRQSSKDPQLILSRTCNEFLIKLFALEVPEVAEGIVNILGVAREPGSRAKIAVSSTET 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
+DPVGACVGM+GSRVQ VV EL+ EKIDIV WSPD A FV NAL PA V+ VV+DE+
Sbjct: 244 DVDPVGACVGMKGSRVQNVVQELQGEKIDIVPWSPDPARFVSNALSPAQVSLVVVDEESK 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+ V+VP +QLSLAIGR+GQNVRLAS L W ID+ +E + + + Q ++
Sbjct: 304 TLLVVVPDDQLSLAIGRQGQNVRLASALLDWRIDVKSESRYARFIE----DGFQSLLELA 359
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD--EETAVEIQGRAR 414
+ E A LL G+ V ELA E+ I+GFD EE + AR
Sbjct: 360 GMTEKRAELLAENGYGSVTELAAASAEELQEIDGFDLGEEDTEALLVVAR 409
Score = 38.8 bits (89), Expect = 2.3, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 15/72 (20%)
Query: 435 EELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTP 494
+ L + G+ K L ENG ++ +LA S ++L
Sbjct: 353 QSLLELAGMTEKRAELLAENGYGSVTELAAASAEELQEID---------------GFDLG 397
Query: 495 KDQVESMIIHAR 506
++ E++++ AR
Sbjct: 398 EEDTEALLVVAR 409
>gi|158523046|ref|YP_001530916.1| transcription elongation factor NusA [Desulfococcus oleovorans
Hxd3]
gi|158511872|gb|ABW68839.1| NusA antitermination factor [Desulfococcus oleovorans Hxd3]
Length = 475
Score = 366 bits (940), Expect = 5e-99, Method: Composition-based stats.
Identities = 184/432 (42%), Positives = 273/432 (63%), Gaps = 6/432 (1%)
Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66
++ ++ + V+ +K IDRD ++ + ++I+ AAR YG DI + +TG+I +F+
Sbjct: 4 QDVKRVVEQVSRDKGIDRDTLVKALEEAIKSAARKRYGAAIDIETMYDEDTGEIEIFQFK 63
Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
EVVE V++ QI+ R DP ++G + + FGR+A QSAKQVIIQK+REAE
Sbjct: 64 EVVETVQDPDLQITFVEGRALDPECELGDSLGVKMDTQSFGRIAAQSAKQVIIQKMREAE 123
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
R Y F +K GEII+G V R+E GNVIV++G ++ ++ E I E R GDRV++ +
Sbjct: 124 RSAVYKNFVEKEGEIINGIVSRMERGNVIVNIGEAEAILNSREQIPGEGYRRGDRVRANV 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
V E GPQ++LSR HP F+V LF EVPEI GI+ +KA++R+ G R K+AV S+D
Sbjct: 184 MKVLEETAGPQIILSRAHPDFVVNLFKTEVPEISEGIITIKAIAREAGGRTKIAVVSNDM 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVG+RG+R+Q VV EL+ EKIDIV W+PD A FV NAL PA + +V++DED
Sbjct: 244 DIDPVGACVGVRGNRIQNVVKELKGEKIDIVPWNPDPAKFVCNALSPAEIARVIIDEDNA 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+E+IVP E SLAIGRRGQNVRLAS+LTGW +D+ +E + ++ ++ Q
Sbjct: 304 AMEIIVPDESHSLAIGRRGQNVRLASKLTGWHLDVQSESIYTQAMERGYDTLLQIP---- 359
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE--GIDITL 424
VD +A+ L GF ++++ + ++ +EG DE +A + A + E + +
Sbjct: 360 GVDGSLANALCEVGFFSADDISGAAVDDLIELEGIDEASAKALIRDAVKVAEQAAREQAI 419
Query: 425 QKKIRELGVSEE 436
++K + ++E
Sbjct: 420 REKAAKEQAAKE 431
>gi|58584795|ref|YP_198368.1| transcription elongation factor NusA [Wolbachia endosymbiont strain
TRS of Brugia malayi]
gi|58419111|gb|AAW71126.1| Transcription elongation factor, NusA [Wolbachia endosymbiont
strain TRS of Brugia malayi]
Length = 520
Score = 366 bits (940), Expect = 5e-99, Method: Composition-based stats.
Identities = 191/510 (37%), Positives = 317/510 (62%), Gaps = 17/510 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
L++++ A ++ +K +D +V++ + +I+ A YG+ S + V I+ TG++ +R
Sbjct: 21 NLDIIKTAGEISLQKGLDFEVIMKALESAIEAVAYQKYGSKSKVVVNIDRSTGEVISYRE 80
Query: 66 LEVVEEVENYTCQ-----ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
L+VV++ N I+L A+ +G ++ L ++ + + A+Q I Q
Sbjct: 81 LKVVDDEPNGEEHNGYGSITLTQAKLIKEDAKVGDTIN-ELLSLNTDLASARIAQQRIAQ 139
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
++ E +QY EFKDKVGEI G VK+VEY ++I+D+ + + I E R GD
Sbjct: 140 VIKYEELKKQYEEFKDKVGEIRYGIVKQVEYSDLIIDINGTRAYLPLRNLIGGELFREGD 199
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
++K+YI V+R G Q++LSR F+ L E+PEI +G+V VK ++RD GSR+K+A
Sbjct: 200 KIKAYIQTVKRSDDGRQIILSRASEGFLEALLSQEIPEIADGLVTVKGIARDAGSRSKVA 259
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
VFS D +IDPVGACVG++G R++A++ EL EKID+V + D FVI A+ PA V+KV+
Sbjct: 260 VFSPDKNIDPVGACVGVKGERIKAIIHELNGEKIDVVHYFSDLGQFVIKAITPAEVSKVI 319
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DE +E+IV ++QLSLAIG++GQNVRLAS+L GW I+I++ +++S R ++ ++ +
Sbjct: 320 IDESENCVELIVAEDQLSLAIGKKGQNVRLASELIGWKIEILSTQQESERRNRELSQCSA 379
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
F +A+N++EI+ LLV EGF+ VE+++ I E+ASIEGF+E+ A E++ RA YL+
Sbjct: 380 LFAEALNLEEIMGQLLVTEGFSSVEDISNASIKELASIEGFNEDIASELRNRANRYLKAE 439
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ ++++ LG+ ++ ++P + K+AL E+GIKT+E++A S + + +
Sbjct: 440 NDRKIEELKSLGMESDVINLP-LSIDDKIALSEHGIKTLENIADLSSYEFCSILSSSASD 498
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMG 510
E K+ V S+I+ AR K+G
Sbjct: 499 KENL----------KNTVNSIIMEARKKLG 518
>gi|225677161|ref|ZP_03788159.1| transcription elongation factor NusA [Wolbachia endosymbiont of
Muscidifurax uniraptor]
gi|225590785|gb|EEH12014.1| transcription elongation factor NusA [Wolbachia endosymbiont of
Muscidifurax uniraptor]
Length = 523
Score = 366 bits (939), Expect = 5e-99, Method: Composition-based stats.
Identities = 199/511 (38%), Positives = 323/511 (63%), Gaps = 14/511 (2%)
Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66
L++++ A ++ +K +D DVV+ + +I+ A YG+ S I V I+ TG ++ +R L
Sbjct: 22 LDVIKTAGELSLQKGLDFDVVIKALESAIEAVAYQKYGSKSKIVVNIDRNTGKVTSYRKL 81
Query: 67 EVVEEVEN-----YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
+V+++ N I+L A+ IG VS L ++ + + A+Q I Q
Sbjct: 82 KVIDDESNREENTEYESITLTQAKLIKEDAKIGDTVS-ELLSLNTDLASARIAQQKIAQI 140
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
+++ E +QY EFKDKVGEI G VK+VEY ++I+D+ + + E+ R GD+
Sbjct: 141 IKDEESKKQYEEFKDKVGEIRYGIVKQVEYSDLIIDINGTKAYLPLRNLTGGESFREGDK 200
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
VK+YI V+R G Q++LSRTH F+ L + E+PEI +G+V +K ++RD GSR+K+AV
Sbjct: 201 VKTYIQTVKRSDDGRQIILSRTHEGFLEALLNQEIPEIADGLVTIKGIARDAGSRSKVAV 260
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
FS D +IDPVGACVG++G R++ ++ EL EKID++ +S D FVI A+ PA V+KV++
Sbjct: 261 FSPDKNIDPVGACVGVKGDRIKTIIHELNGEKIDVINYSSDLGQFVIKAITPAEVSKVII 320
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DE+ IE+IV ++QLSLAIG++GQNVRLAS+L GW I+I++ +++S R K+ ++ +
Sbjct: 321 DENENCIELIVAEDQLSLAIGKKGQNVRLASELVGWKIEILSTQQESERRSKELSQCSAL 380
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F +A+N++EI+ LLV EGF+ VE+++ I E+ASIEGF+E+ A E+ RA +YL+ +
Sbjct: 381 FAEALNLEEIMGQLLVTEGFSSVEDISSASIKELASIEGFNEDIANELHNRANKYLKAEN 440
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
++++ LG+ +++ ++ + K+AL ++ IKT+ED+A S + + N
Sbjct: 441 DRKIEELKSLGMEDDVINLT-LSIDNKIALSKHDIKTLEDIADLSSYEFCSILSSSADNK 499
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512
+ KD V+S+II AR K+G I
Sbjct: 500 MNSENL-------KDTVDSIIIEARKKLGLI 523
>gi|187931005|ref|YP_001890989.1| transcription elongation factor NusA [Francisella tularensis subsp.
mediasiatica FSC147]
gi|187711914|gb|ACD30211.1| transcription termination factor NusA [Francisella tularensis
subsp. mediasiatica FSC147]
Length = 489
Score = 366 bits (939), Expect = 6e-99, Method: Composition-based stats.
Identities = 160/515 (31%), Positives = 295/515 (57%), Gaps = 38/515 (7%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + + VA EK I +D++ M +++ + +I V+I+ TGD R+
Sbjct: 4 ELLLVLETVANEKDISKDLLFEAMEEALAIITKKELDEHMNIEVKIDRVTGDFKADRVWH 63
Query: 68 VV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
+V E++ +Y+ ++ V +++ ++ G V+ +P+ ++GR+A AKQ++++K++
Sbjct: 64 IVSEDEDLIDYSKELYEDVVQEKGYNVKAGDVMREPVEVKEYGRIAATMAKQILMKKIKN 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVK 183
ER++ +++K+G+I+ G +KR Y ++VDLGN+ +G++ + + I+RE R GD+++
Sbjct: 124 FEREKSARFYQNKIGDIVYGEIKRATYEILVVDLGNNAEGILPKKDLIARERYRVGDKIR 183
Query: 184 SYIY--DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+ + + + ++LSR+ + LF +EVPE+ ++ + V R+PG R+K+ V
Sbjct: 184 ACVEAVESDESGKPNTIMLSRSSNTMLKALFKLEVPEVEEELINIVNVVREPGFRSKVTV 243
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP---AIVTK 298
S+D IDP GACVG+RGSR+ ++++EL EK+D+++W+ D + IN+L P A + +
Sbjct: 244 KSNDQRIDPCGACVGVRGSRIHSIMSELNGEKVDVILWNEDMVQYAINSLSPVDAADILE 303
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
V +DE+ ++++V +E LS AIG+ G NVRLAS L GW I+++++ E +
Sbjct: 304 VNVDEETNSMDIVVKQESLSKAIGKNGVNVRLASSLIGWKINVLSDAEQEEKQ----MSI 359
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
+ F++A+++D A +L+ EG +E+LA + +E+ IEGFDEE E+Q RA+ +
Sbjct: 360 VEKFVEALDIDHDFALVLIEEGIETLEDLAYLDRAELLEIEGFDEEIVDELQERAKAVIL 419
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ +++L + G+ + L +N I TMEDLA SVD+LL
Sbjct: 420 SQA------LGGKKPAQDLLDMQGMSLDLAEQLAQNNIVTMEDLAELSVDELLDI----- 468
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
+ ++Q ++I+ AR W E
Sbjct: 469 ------------VDIDEEQATNLIMQARAP--WFE 489
>gi|218288337|ref|ZP_03492636.1| NusA antitermination factor [Alicyclobacillus acidocaldarius LAA1]
gi|258511413|ref|YP_003184847.1| NusA antitermination factor [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|218241696|gb|EED08869.1| NusA antitermination factor [Alicyclobacillus acidocaldarius LAA1]
gi|257478139|gb|ACV58458.1| NusA antitermination factor [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 373
Score = 365 bits (938), Expect = 7e-99, Method: Composition-based stats.
Identities = 162/363 (44%), Positives = 240/363 (66%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
++ L+ D +A EK ID++V+L + ++ + R + + +++RVE+ +TG++ ++
Sbjct: 2 NVDFLEALDQLAREKGIDKEVLLEAIEAALIASYRRNFHSAANVRVEVKRDTGEVHVYAR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVEE ++ +ISL ARD +PS IG VV + P DFGR+A Q+AKQV++Q+V+EA
Sbjct: 62 KTVVEEPKDTRLEISLDAARDINPSYQIGDVVEIEVTPRDFGRIAAQAAKQVVMQRVKEA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y +F D+ E++SG V R+E +DLG+++ ++ + E ++ + L+ G R+K +
Sbjct: 122 ERSVIYSKFADREEEVVSGIVSRLEPRVAYIDLGDTEAILPQSEQMASDKLQVGKRLKVF 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I V R +GPQ+++SRTHP + +LF +EVPEIY GIV++KAV+R+ GSR+K+AV S +
Sbjct: 182 IARVERTSKGPQIVVSRTHPGLLRRLFELEVPEIYEGIVEIKAVAREAGSRSKIAVHSRN 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DP+GACVG RGSRVQA+V EL EK+DIV WS D ATFV NAL PA V V + ED
Sbjct: 242 PEVDPIGACVGARGSRVQAIVNELNGEKVDIVEWSEDPATFVANALSPAKVIDVHIYEDE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
+VP QLSLAIG+ GQN RLA++LTGW IDI +E + + + D E T
Sbjct: 302 RVARTVVPDYQLSLAIGKEGQNARLAARLTGWKIDIKSESQMASHSLLDQLEDTNEEEPE 361
Query: 366 INV 368
Sbjct: 362 FAT 364
>gi|15614979|ref|NP_243282.1| transcription elongation factor NusA [Bacillus halodurans C-125]
gi|20139215|sp|Q9KA74|NUSA_BACHD RecName: Full=Transcription elongation protein nusA
gi|10175036|dbj|BAB06135.1| transcriptional terminator [Bacillus halodurans C-125]
Length = 382
Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats.
Identities = 150/373 (40%), Positives = 229/373 (61%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E + + EK I ++V++ + ++ + + ++RV++N E G I +F
Sbjct: 2 NSEFMDALTTLEKEKGISKEVIIEAIEAALISGYKRNFNQAQNVRVDVNRENGSIRVFAR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
EVVEEV + +ISL A+ +P+ ++ VV + P DFGR+A Q+AKQV+ Q+VREA
Sbjct: 62 KEVVEEVFDARLEISLDEAKGINPNYEVDDVVEIEVTPKDFGRIAAQTAKQVVTQRVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y +F D+ +I++G V+R + + VDLG + ++ E + E+ R DR+K+Y
Sbjct: 122 ERGIIYADFIDREEDIMTGIVQRQDNRFIYVDLGKVEALLPLSEQMPNESYRHNDRIKAY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I V + +GPQ+++SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V + +
Sbjct: 182 ITKVEKTTKGPQIMISRTHPGLLKRLFELEVPEIYDGTVELKSVAREAGDRSKISVHAEN 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DPVGACVG +GSRVQ +V EL+ EKIDIV WS D +V NAL P+ V KV ++E+
Sbjct: 242 PEVDPVGACVGPKGSRVQTIVNELKGEKIDIVRWSEDPVEYVANALSPSKVVKVNVNEEE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
+VIVP QLSLAIG+RGQN RLA++LTGW IDI +E E + + +
Sbjct: 302 KTTQVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESEAQELGLLEDEAASHETLAL 361
Query: 366 INVDEIIAHLLVA 378
V
Sbjct: 362 DQETADQPEATVE 374
>gi|56707228|ref|YP_169124.1| transcription elongation factor NusA [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110669698|ref|YP_666255.1| transcription elongation factor NusA [Francisella tularensis subsp.
tularensis FSC198]
gi|134301263|ref|YP_001121231.1| transcription elongation factor NusA [Francisella tularensis subsp.
tularensis WY96-3418]
gi|224456289|ref|ZP_03664762.1| transcription elongation factor NusA [Francisella tularensis subsp.
tularensis MA00-2987]
gi|254369913|ref|ZP_04985921.1| hypothetical protein [Francisella tularensis subsp. tularensis
FSC033]
gi|254874067|ref|ZP_05246777.1| transcription factor nusA [Francisella tularensis subsp. tularensis
MA00-2987]
gi|56603720|emb|CAG44682.1| N utilization substance protein A [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110320031|emb|CAL08065.1| N utilization substance protein A [Francisella tularensis subsp.
tularensis FSC198]
gi|134049040|gb|ABO46111.1| transcription factor NusA [Francisella tularensis subsp. tularensis
WY96-3418]
gi|151568159|gb|EDN33813.1| hypothetical protein FTBG_01505 [Francisella tularensis subsp.
tularensis FSC033]
gi|254840066|gb|EET18502.1| transcription factor nusA [Francisella tularensis subsp. tularensis
MA00-2987]
gi|282158336|gb|ADA77727.1| transcription elongation factor NusA [Francisella tularensis subsp.
tularensis NE061598]
Length = 489
Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats.
Identities = 161/515 (31%), Positives = 295/515 (57%), Gaps = 38/515 (7%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + + VA EK I +D++ M +++ + +I V+I+ TGD R+
Sbjct: 4 ELLLVLETVANEKDISKDLLFEAMEEALAIITKKELDEHMNIEVKIDRVTGDFKADRVWH 63
Query: 68 VV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
+V E++ +Y+ ++ V +++ ++ G V+ +P+ ++GR+A AKQ++++K++
Sbjct: 64 IVSEDEDLIDYSKELYEDVVQEKGYNVKAGDVMREPVEVKEYGRIAATMAKQILMKKIKN 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVK 183
ER++ +++K+G+I+ G +KR Y ++VDLGN+ +G++ + + I+RE R GD+++
Sbjct: 124 FEREKSARFYQNKIGDIVYGEIKRATYEILVVDLGNNAEGILPKKDLIARERYRVGDKIR 183
Query: 184 SYIY--DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+ + + + ++LSR+ + LF +EVPE+ ++ + V R+PG R+K+ V
Sbjct: 184 ACVEAVESDESGKPNTIMLSRSSNTMLKALFKLEVPEVEEELINIVNVVREPGFRSKVTV 243
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP---AIVTK 298
S+D IDP GACVG+RGSR+ ++++EL EK+D+++W+ D + IN+L P A + +
Sbjct: 244 KSNDQRIDPCGACVGVRGSRIHSIMSELNGEKVDVILWNEDMVQYAINSLSPVDAADILE 303
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
V +DE+ I+++V +E LS AIG+ G NVRLAS L GW I+++++ E +
Sbjct: 304 VNVDEETNSIDIVVKQESLSKAIGKNGVNVRLASSLIGWKINVLSDAEQEEKQ----MSI 359
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
+ F++A+++D A +L+ EG +E+LA + +E+ IEGFDEE E+Q RA+ +
Sbjct: 360 VEKFVEALDIDHDFALVLIEEGIETLEDLAYLDRAELLEIEGFDEEIVDELQERAKAVIL 419
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ +++L + G+ + L +N I TMEDLA SVD+LL
Sbjct: 420 SQA------LGGKKPAQDLLDMQGMSLDLAEQLAQNNIVTMEDLAELSVDELLDI----- 468
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
+ ++Q ++I+ AR W E
Sbjct: 469 ------------VDIDEEQATNLIMQARAP--WFE 489
>gi|228966761|ref|ZP_04127805.1| Transcription elongation protein nusA [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228792860|gb|EEM40418.1| Transcription elongation protein nusA [Bacillus thuringiensis
serovar sotto str. T04001]
Length = 368
Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats.
Identities = 150/365 (41%), Positives = 224/365 (61%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + EK I +D+++ + ++ A + + ++RV NPE G I + +
Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKD 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I
Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V + +
Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVHAENID 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVG+CVG +G RVQ VV EL+ EKIDIV WS D +V NAL P+ V KV++DED
Sbjct: 244 VDPVGSCVGPKGQRVQRVVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEDEKA 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + + F
Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDSVIAFGFDSV 363
Query: 368 VDEII 372
DEI
Sbjct: 364 EDEIQ 368
>gi|253573564|ref|ZP_04850907.1| transcription termination factor NusA [Paenibacillus sp. oral taxon
786 str. D14]
gi|251847092|gb|EES75097.1| transcription termination factor NusA [Paenibacillus sp. oral taxon
786 str. D14]
Length = 365
Score = 365 bits (936), Expect = 1e-98, Method: Composition-based stats.
Identities = 146/363 (40%), Positives = 237/363 (65%)
Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66
++ ++ + + EK I +D++ + ++ + + + T ++RV++N TG+I ++
Sbjct: 3 MDFIEALNELEREKGISKDILFEAIEAALISSYKRNFNTAQNVRVDMNRHTGEIKVYARK 62
Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
VVEEV + +ISL+ AR+ +P+ + + + P DFGR+A Q+AKQV+ Q++REAE
Sbjct: 63 LVVEEVLDPRTEISLQAAREINPNYHLDDITEIEVTPRDFGRIAAQTAKQVVTQRIREAE 122
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
R Y F +K +I++G V+R + N+ VDLG + + +E + E + GDR+K+YI
Sbjct: 123 RGLIYNAFVEKEEDIVTGIVQRQDLRNIYVDLGKVEAHLPLNELMPNEKFKHGDRIKAYI 182
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
V +GPQ+LLSRTHP + +LF +EVPEI++G+V++++V+R+ G R+K+AV+S +S
Sbjct: 183 TKVENTTKGPQILLSRTHPGLLKRLFELEVPEIFDGVVEIRSVAREAGFRSKIAVYSRNS 242
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
+DPVG+CVG +G+RVQ +V ELR EKIDIV +S + +V NAL P+ V +V + E
Sbjct: 243 EVDPVGSCVGPKGTRVQTIVNELRGEKIDIVRYSENVEEYVANALSPSKVLEVQVFEAEK 302
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
VIVP QLSLAIG +GQN RLA++LTGW IDI +E + ++ ++ + +I
Sbjct: 303 MARVIVPDYQLSLAIGIKGQNARLAAKLTGWKIDIKSETQAEEEFGREKTDQGEMPQDSI 362
Query: 367 NVD 369
+VD
Sbjct: 363 SVD 365
>gi|319649523|ref|ZP_08003679.1| transcription elongation factor NusA [Bacillus sp. 2_A_57_CT2]
gi|317398685|gb|EFV79367.1| transcription elongation factor NusA [Bacillus sp. 2_A_57_CT2]
Length = 385
Score = 365 bits (936), Expect = 1e-98, Method: Composition-based stats.
Identities = 152/364 (41%), Positives = 229/364 (62%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + EK I RDV++ + ++ A R + ++R+++N G + +F E
Sbjct: 4 ELLDALTLLEKEKGISRDVIIEAIEAALVSAYRRNFNQAQNVRIDLNLGNGTMRVFARKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +IS++ A+ +P+ + VV + P DFGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 VVDEVFDPRLEISVEDAQKINPNYQVEDVVEMEVTPKDFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF D+ +I++G V+R + + V LG + ++ +E + E +P DR+K +I
Sbjct: 124 GIIYSEFIDREEDIMTGIVQRTDPKFIYVSLGKIEAILPANEQMPNERYQPHDRIKVFIT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V S +
Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEIEVPEIYDGTVEIKSVAREAGDRSKISVHSDNEE 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVG+CVG +G+RVQAVV EL+ EKIDIV WS D FV NAL P+ V V+++ED
Sbjct: 244 VDPVGSCVGPKGTRVQAVVNELKGEKIDIVKWSSDPVVFVANALSPSKVLDVIVNEDDKA 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + +E F
Sbjct: 304 TTVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPRDETLLNFDNDGY 363
Query: 368 VDEI 371
+E
Sbjct: 364 ENED 367
>gi|317129165|ref|YP_004095447.1| NusA antitermination factor [Bacillus cellulosilyticus DSM 2522]
gi|315474113|gb|ADU30716.1| NusA antitermination factor [Bacillus cellulosilyticus DSM 2522]
Length = 374
Score = 365 bits (936), Expect = 1e-98, Method: Composition-based stats.
Identities = 151/365 (41%), Positives = 234/365 (64%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E + + +K ID++++L + ++ + + + ++RV+I+ TG I +F
Sbjct: 2 NSEFMDALTTIEKDKGIDKEIILEAIEQALITGYKRNFNSAQNVRVDIDRNTGSIRVFAR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
EVVEEV + +ISL+ A++ P D+ VV + P DFGR+A Q+AKQV+ Q+VREA
Sbjct: 62 KEVVEEVFDSRLEISLEAAKNIHPQYDVDDVVEIEVTPRDFGRIAAQTAKQVVTQRVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y +F D+ +I++G V+R ++ + VDLG + ++ E + E + DR+K+Y
Sbjct: 122 ERGIIYSDFIDREEDIMTGIVQRQDHRFIYVDLGKVEALMPVSEQMPNETYKHNDRIKAY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I V + +GPQ+++SRTHP + +LF +EVPEIY+G V++K+VSR+ G R+K+AV + D
Sbjct: 182 ITKVEKTTKGPQIMISRTHPGLLKRLFELEVPEIYDGTVEIKSVSREAGDRSKIAVHAED 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V +V ++E+
Sbjct: 242 PEVDPVGSCVGPKGQRVQTIVNELKGEKIDIVRWSEDPKVYVANALSPSNVVQVTVNEEE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
+VIVP QLSLAIG++GQN RLA++LTGW IDI ++ E + N T+
Sbjct: 302 KMTQVIVPDYQLSLAIGKKGQNARLAAKLTGWKIDIKSQSEAEELGLYNSNTDTEQDWTD 361
Query: 366 INVDE 370
+V+E
Sbjct: 362 EDVEE 366
>gi|259046783|ref|ZP_05737184.1| N utilization substance protein A [Granulicatella adiacens ATCC
49175]
gi|259036551|gb|EEW37806.1| N utilization substance protein A [Granulicatella adiacens ATCC
49175]
Length = 366
Score = 365 bits (936), Expect = 1e-98, Method: Composition-based stats.
Identities = 139/343 (40%), Positives = 216/343 (62%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + EK I +DVV++ + ++ A + YG ++ VE + + G++ ++ + E
Sbjct: 4 EMLRALTVLEEEKGISKDVVITALEAALVSAYKKNYGQAQNVEVEFDQKKGNMHVYAVKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVE V + T ++SL+ A ++ + ++G + + P DFGR+A Q+AKQVI+Q++R+AER
Sbjct: 64 VVEYVFDSTLEVSLEEAHEKHKAYEVGDKIRFEVTPKDFGRIAAQTAKQVIMQRLRDAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF EI++G V R ++ V V+LG + + + I E P R+K +
Sbjct: 124 TNIYNEFIQYENEIMTGVVDRQDFRYVYVNLGRIVAGMAKQDQIPTEEYLPDQRIKVLVS 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +GPQ+ +SRTHP + +LF EVPEIY+G+V++ +++R+ G RAK+AV ++D++
Sbjct: 184 KVDNTTKGPQIFVSRTHPDLLKRLFEQEVPEIYDGVVEIVSIAREAGDRAKVAVRTNDAN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVG CVG RG RV +V EL E +DIV W+ D A ++ NAL PA V KV + D
Sbjct: 244 LDPVGTCVGPRGQRVHNIVEELNGENMDIVEWNEDPAIYIKNALNPAQVLKVEFNSDNNG 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350
V+VP QLSLAIG+RGQN RLA++LTG+ IDI +E
Sbjct: 304 CIVVVPDHQLSLAIGKRGQNARLAAKLTGYRIDIKSETAYEEY 346
>gi|206972659|ref|ZP_03233600.1| N utilization substance protein A [Bacillus cereus AH1134]
gi|218235265|ref|YP_002368617.1| transcription elongation factor NusA [Bacillus cereus B4264]
gi|228922570|ref|ZP_04085870.1| Transcription elongation protein nusA [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228954092|ref|ZP_04116121.1| Transcription elongation protein nusA [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228960032|ref|ZP_04121696.1| Transcription elongation protein nusA [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|229047502|ref|ZP_04193092.1| Transcription elongation protein nusA [Bacillus cereus AH676]
gi|229071314|ref|ZP_04204537.1| Transcription elongation protein nusA [Bacillus cereus F65185]
gi|229081071|ref|ZP_04213581.1| Transcription elongation protein nusA [Bacillus cereus Rock4-2]
gi|229111287|ref|ZP_04240840.1| Transcription elongation protein nusA [Bacillus cereus Rock1-15]
gi|229146387|ref|ZP_04274758.1| Transcription elongation protein nusA [Bacillus cereus BDRD-ST24]
gi|229152015|ref|ZP_04280210.1| Transcription elongation protein nusA [Bacillus cereus m1550]
gi|229180092|ref|ZP_04307436.1| Transcription elongation protein nusA [Bacillus cereus 172560W]
gi|296504311|ref|YP_003666011.1| transcription elongation factor NusA [Bacillus thuringiensis
BMB171]
gi|206732416|gb|EDZ49597.1| N utilization substance protein A [Bacillus cereus AH1134]
gi|218163222|gb|ACK63214.1| N utilization substance protein A [Bacillus cereus B4264]
gi|228603301|gb|EEK60778.1| Transcription elongation protein nusA [Bacillus cereus 172560W]
gi|228631364|gb|EEK87998.1| Transcription elongation protein nusA [Bacillus cereus m1550]
gi|228637020|gb|EEK93479.1| Transcription elongation protein nusA [Bacillus cereus BDRD-ST24]
gi|228672063|gb|EEL27354.1| Transcription elongation protein nusA [Bacillus cereus Rock1-15]
gi|228702115|gb|EEL54591.1| Transcription elongation protein nusA [Bacillus cereus Rock4-2]
gi|228711768|gb|EEL63720.1| Transcription elongation protein nusA [Bacillus cereus F65185]
gi|228723749|gb|EEL75104.1| Transcription elongation protein nusA [Bacillus cereus AH676]
gi|228799548|gb|EEM46501.1| Transcription elongation protein nusA [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228805658|gb|EEM52248.1| Transcription elongation protein nusA [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228836999|gb|EEM82340.1| Transcription elongation protein nusA [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|296325363|gb|ADH08291.1| transcription elongation factor NusA [Bacillus thuringiensis
BMB171]
Length = 368
Score = 364 bits (935), Expect = 2e-98, Method: Composition-based stats.
Identities = 147/363 (40%), Positives = 225/363 (61%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + EK I +D+++ + ++ A + + ++RV NPE G I + +
Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKD 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I
Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V++ ++
Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVYAENTD 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V KV++DE+
Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEEEKA 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + + F
Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDSVIAFGFDSV 363
Query: 368 VDE 370
DE
Sbjct: 364 EDE 366
>gi|229191985|ref|ZP_04318955.1| Transcription elongation protein nusA [Bacillus cereus ATCC 10876]
gi|228591536|gb|EEK49385.1| Transcription elongation protein nusA [Bacillus cereus ATCC 10876]
Length = 368
Score = 364 bits (935), Expect = 2e-98, Method: Composition-based stats.
Identities = 148/363 (40%), Positives = 226/363 (62%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + EK I +D+++ + ++ A + + ++RV NPE G I + +
Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKD 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I
Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V++ ++
Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVYAENTD 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V KV++DE+
Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEEEKA 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + +R F
Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDRVIAFGFDSV 363
Query: 368 VDE 370
DE
Sbjct: 364 EDE 366
>gi|323141193|ref|ZP_08076094.1| transcription termination factor NusA [Phascolarctobacterium sp.
YIT 12067]
gi|322414336|gb|EFY05154.1| transcription termination factor NusA [Phascolarctobacterium sp.
YIT 12067]
Length = 357
Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats.
Identities = 145/341 (42%), Positives = 231/341 (67%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+ + + EK ID +++ + D++ A + GT ++RVE+N ETG+I ++
Sbjct: 2 NADFISAIQELGKEKGIDPELLFQAVDDALVAAYKKNTGTNQNVRVEMNKETGEIHVYAQ 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVE + +++L+ A+ +P G +V + P +FGR+A Q+AKQ ++Q++REA
Sbjct: 62 RTVVEGEADGINEMTLEDAQAINPQYLAGDIVEVEVTPKNFGRIAAQNAKQFVVQRIREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER + Y F+ + +I++G ++R+E NV +DLG + V+ +E I E + +R+K+Y
Sbjct: 122 ERGQVYERFQSRANDIVTGIIERMENQNVYIDLGKVEAVLTPNEQIPGEIYQYHERMKTY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I +V+R +GPQ+++SRTHP + +LF +EVPEI++G+V++K+V+R+PG R+K++V+++D
Sbjct: 182 IVEVKRTNKGPQIMVSRTHPGLLKRLFELEVPEIHDGVVEIKSVAREPGMRSKISVYTAD 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
S++DPVGACVG +G RVQ +V ELR EKIDIV +S D A +V NAL PA V K ++E
Sbjct: 242 SNVDPVGACVGHKGMRVQTIVNELRGEKIDIVKYSEDPAQYVANALSPAKVVKTNVNEAD 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346
V+VP QLSLAIG+ GQN RLA++LTGW IDI +E +
Sbjct: 302 KICRVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSETQ 342
>gi|220931626|ref|YP_002508534.1| NusA antitermination factor [Halothermothrix orenii H 168]
gi|219992936|gb|ACL69539.1| NusA antitermination factor [Halothermothrix orenii H 168]
Length = 377
Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats.
Identities = 155/371 (41%), Positives = 240/371 (64%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+E L D + EK I ++V++ + ++ A + +G+ ++RV I P++G++ ++
Sbjct: 2 NIEFLHALDDIEKEKGISKEVLIEAIETALLSAYKKEFGSKENVRVHIVPDSGEVHVYSQ 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+VV+EV N +ISL+ A+ + + + G +V + P +FGR+A Q+AKQV++Q++REA
Sbjct: 62 KKVVDEVNNERKEISLEEAQKLNKNYEPGDIVEKEVTPANFGRIAAQTAKQVVMQRIREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ERD Y E+K K GEII+GTV+R NV++DLG ++ ++ E I E G R+K Y
Sbjct: 122 ERDVIYEEYKQKEGEIITGTVQRFHNNNVLIDLGRTEALLPPSEQIPGELYEMGRRIKVY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ +V +GP++L+SR+HP + +LF +EVPEI++GIV++KAV+R+ G R+K+AV S D
Sbjct: 182 VVEVASTTKGPRILVSRSHPGLLKRLFEVEVPEIFDGIVEIKAVAREAGYRSKMAVSSYD 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
++DPVG+CVG +G RVQAVV +L EKIDI+ WS D A V NAL PA V V LDE+
Sbjct: 242 ENVDPVGSCVGPKGMRVQAVVDQLNGEKIDIIEWSEDPAILVANALNPAKVINVSLDEEE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
EV+VP QLSLAIG+ GQN RLA++LTGW +DI +E + + + +
Sbjct: 302 KVAEVVVPDFQLSLAIGKEGQNARLAAKLTGWKVDIKSESQFEKETGEVEKKIPADDGEK 361
Query: 366 INVDEIIAHLL 376
++ + L
Sbjct: 362 VDEVGVEDDSL 372
>gi|125973509|ref|YP_001037419.1| NusA antitermination factor [Clostridium thermocellum ATCC 27405]
gi|256003327|ref|ZP_05428318.1| NusA antitermination factor [Clostridium thermocellum DSM 2360]
gi|281417712|ref|ZP_06248732.1| NusA antitermination factor [Clostridium thermocellum JW20]
gi|125713734|gb|ABN52226.1| NusA antitermination factor [Clostridium thermocellum ATCC 27405]
gi|255992617|gb|EEU02708.1| NusA antitermination factor [Clostridium thermocellum DSM 2360]
gi|281409114|gb|EFB39372.1| NusA antitermination factor [Clostridium thermocellum JW20]
gi|316940252|gb|ADU74286.1| NusA antitermination factor [Clostridium thermocellum DSM 1313]
Length = 404
Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats.
Identities = 154/391 (39%), Positives = 245/391 (62%)
Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66
+L+ + + EK ID+D ++ + ++ A + +G+ +++V I+ ETGD ++ L
Sbjct: 3 ADLIHALEQLEKEKGIDKDTLIEAIEAALISAYKRSFGSSQNVKVSIDRETGDFKVYALK 62
Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
+V +N +IS++ A+ +P + +V + P FGR+A Q+AKQV++Q++REAE
Sbjct: 63 KVTANPQNELLEISIENAKKINPDFEENDIVEIEVTPRKFGRIAAQTAKQVVVQRIREAE 122
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
R Y EF +K GEI++G V+R+E NVI+DLG ++ ++ E I E + DR+K+YI
Sbjct: 123 RGIIYNEFSNKEGEIVTGVVQRIERKNVIIDLGKAEAILAPSEQIPGEEYKFNDRIKTYI 182
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
+V++ +GPQ+L+SRTHP + +LF +EVPEIY GIV++K+++R+PGSR K+AV+S D
Sbjct: 183 IEVKKTTKGPQILVSRTHPGIIKRLFELEVPEIYEGIVEIKSIAREPGSRTKIAVYSKDE 242
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
++DPVGACVG +G+RVQAVV ELR EKIDI+ WS + ++ ++L PA V +V ++E+
Sbjct: 243 NVDPVGACVGQKGTRVQAVVDELRGEKIDIIKWSSNPEEYISSSLSPAKVIRVDINEEEK 302
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+V VP QLSLAIG+ GQN RLA++LTGW IDI +E + ++ +
Sbjct: 303 SAKVTVPDFQLSLAIGKEGQNARLAAKLTGWKIDIKSESQLRAAIEQQLLNFNGSYSTEK 362
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIAS 397
I L + +E A+
Sbjct: 363 QDTPITPDQLFKTNVEESSNDTVDDNAENAA 393
>gi|311030088|ref|ZP_07708178.1| transcription elongation factor NusA [Bacillus sp. m3-13]
Length = 374
Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats.
Identities = 146/358 (40%), Positives = 227/358 (63%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
EL + EK I +DV++ + ++ A + + ++RV++N ETG + +F +
Sbjct: 4 ELFDALTLMEKEKGISKDVIIEAIEAALISAYKRNFNQAQNVRVDMNLETGTMRVFARKD 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +IS++ AR DP+ VV + P DFGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 VVDEVFDSRLEISIQEARQIDPNYQENDVVEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y E+ ++ +I++G V+R++ + V LG + ++ +E + E+ +P DR+K ++
Sbjct: 124 GVIYSEYIEREEDIMTGIVQRLDSKFIYVSLGKIEALLPVNEQMPNEHYKPHDRIKVFLT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SR+HP + +LF +EVPEIY+G V++K+V+R+ G R+K++V +
Sbjct: 184 KVEKTTKGPQIFVSRSHPGLLKRLFELEVPEIYDGTVEIKSVAREAGDRSKISVHCDNPE 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVGACVG +G RVQA+V EL+ EKIDIV WS D FV NAL P+ V +V ++E+
Sbjct: 244 VDPVGACVGPKGQRVQAIVNELKGEKIDIVRWSKDPVEFVANALSPSKVLEVQVNEEEKA 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
VIVP QLSLAIG+RGQN RLA++LTGW IDI +E E ++ +
Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESEAEELGIYPSLSLSKNDTEN 361
>gi|169831086|ref|YP_001717068.1| transcription elongation factor NusA [Candidatus Desulforudis
audaxviator MP104C]
gi|169637930|gb|ACA59436.1| NusA antitermination factor [Candidatus Desulforudis audaxviator
MP104C]
Length = 359
Score = 364 bits (934), Expect = 3e-98, Method: Composition-based stats.
Identities = 159/358 (44%), Positives = 240/358 (67%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E L + E+SI +V+L + ++ A R +GT + RV+++ TGD ++
Sbjct: 2 NSEFLAALRDLEKERSISVEVLLEAIEAALLSAYRRNFGTSHNARVQVDRHTGDCKVYAR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV+EVE+ QISL+ AR +P + V + P +FGR+A Q+AKQV++Q++REA
Sbjct: 62 RTVVQEVEDPQDQISLEEARAINPGYQLEDTVESEITPRNFGRIAAQTAKQVVVQRIREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER+ + EF + G+I++G V+R+E NV ++LG ++ V+ E I REN RPG R+K+Y
Sbjct: 122 ERNMVFEEFASREGDIVTGVVQRIEQRNVYIELGKTEAVLPPAEQIPRENYRPGQRLKTY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I +V++ +GP +L+SRTHP + +LF +EVPE++ G+V++KAV+R+ G R+K+AV+S+D
Sbjct: 182 IVEVKKTTKGPLILVSRTHPGLLKRLFEIEVPELHQGLVELKAVAREAGIRSKIAVYSND 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
IDPVGACVG +G+RVQA+V EL EKID+V WSPDS+ FV ++L PA V V + ED
Sbjct: 242 EGIDPVGACVGPKGARVQAIVQELNGEKIDVVKWSPDSSKFVSSSLSPAKVIAVEVWEDE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
VIVP QLSLAIG+ GQN RLA++LTGW IDI +E + + ++ ++ +
Sbjct: 302 KIARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQMAEIYREYLEQQGYEQV 359
>gi|225181381|ref|ZP_03734825.1| NusA antitermination factor [Dethiobacter alkaliphilus AHT 1]
gi|225167962|gb|EEG76769.1| NusA antitermination factor [Dethiobacter alkaliphilus AHT 1]
Length = 396
Score = 364 bits (934), Expect = 3e-98, Method: Composition-based stats.
Identities = 157/364 (43%), Positives = 243/364 (66%), Gaps = 1/364 (0%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E L DA+ EK + ++V+ + ++ A + + +++RV++N E+G+I ++
Sbjct: 2 NEEFLAAMDAIEKEKGVKKEVLFEAIEAALVSAYKRNFNAAANVRVQLNRESGEIKVYTR 61
Query: 66 LEVVEEV-ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
LEVVEE + +ISL+ A+ D + G +V + P +FGR+A Q+AKQV+IQ++RE
Sbjct: 62 LEVVEEESNDPQLEISLQDAQKIDSRYEPGEIVEKEVTPKNFGRIAAQTAKQVVIQRIRE 121
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER+ + E+ D+ +II+G V+R+E NVI+DLG ++ V+ E + ++ R +RVK+
Sbjct: 122 AEREIVFDEYIDREEDIITGIVQRMEQKNVIMDLGKTEAVLLPTEQMPGDDYRQSERVKA 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI +V++ +GPQ+ +SRTHP + +LF +EVPEI++G V++K+V+R+ G R+KLAV+S
Sbjct: 182 YITEVKKTSKGPQIFVSRTHPGLLKRLFELEVPEIFDGTVEIKSVAREAGYRSKLAVYSK 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
+ +DPVGACVG +G+RVQA+VTELR EKIDIV W D FV N+L PA V V L ++
Sbjct: 242 NKDVDPVGACVGPKGARVQAIVTELRGEKIDIVKWDEDPVIFVANSLSPAKVMSVSLHQE 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + + + ER++ F
Sbjct: 302 QKVASVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDITSESQAAERQGLPVEERSELFGN 361
Query: 365 AINV 368
+V
Sbjct: 362 DEDV 365
>gi|218898968|ref|YP_002447379.1| N utilization substance protein A [Bacillus cereus G9842]
gi|228909640|ref|ZP_04073463.1| Transcription elongation protein nusA [Bacillus thuringiensis IBL
200]
gi|228940904|ref|ZP_04103463.1| Transcription elongation protein nusA [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228973833|ref|ZP_04134409.1| Transcription elongation protein nusA [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228980422|ref|ZP_04140732.1| Transcription elongation protein nusA [Bacillus thuringiensis
Bt407]
gi|218542029|gb|ACK94423.1| N utilization substance protein A [Bacillus cereus G9842]
gi|228779242|gb|EEM27499.1| Transcription elongation protein nusA [Bacillus thuringiensis
Bt407]
gi|228785858|gb|EEM33861.1| Transcription elongation protein nusA [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228818740|gb|EEM64806.1| Transcription elongation protein nusA [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228849929|gb|EEM94760.1| Transcription elongation protein nusA [Bacillus thuringiensis IBL
200]
gi|326941582|gb|AEA17478.1| transcription elongation factor NusA [Bacillus thuringiensis
serovar chinensis CT-43]
Length = 368
Score = 363 bits (933), Expect = 3e-98, Method: Composition-based stats.
Identities = 149/363 (41%), Positives = 223/363 (61%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + EK I +D+++ + ++ A + + ++RV NPE G I + +
Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKD 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I
Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V + +
Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVHAENID 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVG+CVG +G RVQ VV EL+ EKIDIV WS D +V NAL P+ V KV++DED
Sbjct: 244 VDPVGSCVGPKGQRVQRVVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEDEKA 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + + F
Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDSVIAFGFDSV 363
Query: 368 VDE 370
DE
Sbjct: 364 EDE 366
>gi|323489587|ref|ZP_08094814.1| transcription elongation factor NusA [Planococcus donghaensis
MPA1U2]
gi|323396718|gb|EGA89537.1| transcription elongation factor NusA [Planococcus donghaensis
MPA1U2]
Length = 375
Score = 363 bits (933), Expect = 3e-98, Method: Composition-based stats.
Identities = 154/368 (41%), Positives = 235/368 (63%), Gaps = 3/368 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + + +K I R+V++ + ++ A + + ++RV++N TG + ++ +
Sbjct: 4 ELLDAFEVLEKQKGISREVLIEAIEAALVTAYKRNFNQAQNVRVDLNLNTGTMLVYSRKD 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEVE+ QISL+ A+ +P+ ++G VV + + P +FGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 VVEEVEDERLQISLEDAKVINPAYELGDVVEEEVTPRNFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ EF D+ +I++G V+R++ N+ V LG + V+ + E + E+ +P DR+K YI
Sbjct: 124 GLIFEEFVDRADDIVNGIVERMDARNLYVGLGKVEAVLPQTEQMPNEHYKPHDRIKVYIT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V R RGPQV +SRTHP + +LF EVPEIY+GIV++K+++R+ G R+K++VF+
Sbjct: 184 KVERTTRGPQVFVSRTHPGLLRRLFENEVPEIYDGIVEIKSIAREAGDRSKISVFAHRDD 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
IDPVG+CVG +G RVQ +V EL EKIDIV WS + FV NAL P+ V V ++E+
Sbjct: 244 IDPVGSCVGSKGGRVQTIVNELSGEKIDIVEWSEEPVIFVANALSPSKVLDVQVNEEAKS 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
V+VP QLSLAIG+RGQN RLA++LTGW IDI +E R+ ++ +
Sbjct: 304 TTVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSET---DARELGIYPNENSNIELLE 360
Query: 368 VDEIIAHL 375
E +
Sbjct: 361 SGEELDDF 368
>gi|296132885|ref|YP_003640132.1| transcription termination factor NusA [Thermincola sp. JR]
gi|296031463|gb|ADG82231.1| transcription termination factor NusA [Thermincola potens JR]
Length = 535
Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats.
Identities = 169/398 (42%), Positives = 253/398 (63%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E ++ + + EK I DV+L + ++ A + +G+ ++RV+I+ ETG+I +F
Sbjct: 2 NTEFIEALEELEREKGIAIDVLLEALEAALISAYKRNFGSAQNVRVDIDRETGEIKVFAR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVE+VE+ +ISL+ A+ RDP ++ +V + P DFGR+A Q+AKQV++Q++REA
Sbjct: 62 KTVVEKVEDDRLEISLEEAQKRDPRYELSDIVEIEVTPRDFGRIAAQTAKQVVVQRIREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y EF ++ G+I++G V+R + NV VDLG ++ ++ E I+ E R GDR+K+Y
Sbjct: 122 ERGIIYEEFSNREGDIVTGIVQRQDPKNVYVDLGKTEAILAPSEQIAGEEYRHGDRIKTY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I +V++ +GPQ+L+SRTHP + +LF +EVPEI++G+V++K+V+R+ G+R+K+AV+S D
Sbjct: 182 IVEVKKTTKGPQILVSRTHPGLLKRLFELEVPEIHDGVVELKSVAREAGARSKIAVYSKD 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
++DPVGACVG +G RVQ +V EL+ EKIDIV WSPD A FV NAL PA V V ++E
Sbjct: 242 ENVDPVGACVGPKGMRVQTIVNELKGEKIDIVKWSPDPARFVANALSPAKVLDVKVNEAE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
VIVP QLSLAIG+ GQN RLA++LTGW IDI +E + + D +
Sbjct: 302 KIARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQMAEMADNDDLFEENDDITL 361
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403
N D E + E E G++E
Sbjct: 362 DNQDYAGEEYYEDEYNGEYAEGEYDYDQEDGEYLGYEE 399
>gi|241667733|ref|ZP_04755311.1| transcription elongation factor NusA [Francisella philomiragia
subsp. philomiragia ATCC 25015]
gi|254876277|ref|ZP_05248987.1| transcription elongation factor nusA [Francisella philomiragia
subsp. philomiragia ATCC 25015]
gi|254842298|gb|EET20712.1| transcription elongation factor nusA [Francisella philomiragia
subsp. philomiragia ATCC 25015]
Length = 489
Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats.
Identities = 164/515 (31%), Positives = 292/515 (56%), Gaps = 38/515 (7%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + + VA EK I +D++ M +++ + +I V+I+ TGD R+
Sbjct: 4 ELLLVLETVANEKDISKDLLFEAMEEALAIITKKELDEHMNIEVKIDRVTGDFKADRVWH 63
Query: 68 VV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
+V E++ +Y+ ++ VA+++ ++ G V+ + + ++GR+A AKQ++++K++
Sbjct: 64 IVSEDEDLIDYSKELYEDVAQEKGYNVKAGDVIRESVEVKEYGRIAATMAKQILMKKIKN 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVK 183
ER++ ++ K+G+I+ G VKR Y +++DLGN+ +G++ + + ISRE R GD+++
Sbjct: 124 FEREKTARFYQGKIGDIVYGEVKRATYEILVIDLGNNAEGILPKKDLISRERFRVGDKIR 183
Query: 184 SYIY--DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
S + +V + V+LSR + LF +EVPE+ ++ V V R+PG R+K+ V
Sbjct: 184 SCVESVEVDEFGKPSTVMLSRASNMMLKALFKLEVPEVEEELINVVNVVREPGFRSKVTV 243
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP---AIVTK 298
S+D IDP GACVG+RGSR+ ++++EL EK+D+++W D + IN+L P + +
Sbjct: 244 KSNDQRIDPCGACVGVRGSRIHSIMSELNGEKVDVILWDEDMVQYAINSLSPVDSEDILE 303
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
V +DE+ ++++V +E LS AIG+ G NVRLAS L GW I+++++ E +
Sbjct: 304 VNVDEETNSMDIVVKQESLSKAIGKNGVNVRLASALIGWKINVLSDTEQEEKQ----MSI 359
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
+ F++A+++D A +L+ EG +E+LA + E+ IEGFDEE E+Q RA+ +
Sbjct: 360 VEKFVEALDIDHDFALVLIEEGIETLEDLAYLDRDELLEIEGFDEEIVDELQERAKAVIL 419
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ +E+L ++ G++ ++ L +N I TME+LA SVD+LL
Sbjct: 420 SQA------LGGKKPAEDLLNMQGMNQELADKLAQNNIVTMENLAELSVDELLDI----- 468
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
+ + Q +I+ AR W E
Sbjct: 469 ------------VAIDEKQATDLIMQARAP--WFE 489
>gi|30263819|ref|NP_846196.1| transcription elongation factor NusA [Bacillus anthracis str. Ames]
gi|42782904|ref|NP_980151.1| transcription elongation factor NusA [Bacillus cereus ATCC 10987]
gi|47529243|ref|YP_020592.1| transcription elongation factor NusA [Bacillus anthracis str. 'Ames
Ancestor']
gi|47569093|ref|ZP_00239782.1| transcription termination factor nusA [Bacillus cereus G9241]
gi|49186666|ref|YP_029918.1| transcription elongation factor NusA [Bacillus anthracis str.
Sterne]
gi|49479412|ref|YP_037877.1| transcription elongation factor NusA [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|52141674|ref|YP_085157.1| transcription elongation factor NusA [Bacillus cereus E33L]
gi|65321143|ref|ZP_00394102.1| COG0195: Transcription elongation factor [Bacillus anthracis str.
A2012]
gi|118479036|ref|YP_896187.1| transcription elongation factor NusA [Bacillus thuringiensis str.
Al Hakam]
gi|165872619|ref|ZP_02217250.1| N utilization substance protein A [Bacillus anthracis str. A0488]
gi|167639787|ref|ZP_02398056.1| N utilization substance protein A [Bacillus anthracis str. A0193]
gi|170706870|ref|ZP_02897328.1| N utilization substance protein A [Bacillus anthracis str. A0389]
gi|177652046|ref|ZP_02934592.1| N utilization substance protein A [Bacillus anthracis str. A0174]
gi|190568469|ref|ZP_03021376.1| N utilization substance protein A [Bacillus anthracis
Tsiankovskii-I]
gi|196042176|ref|ZP_03109459.1| N utilization substance protein A [Bacillus cereus NVH0597-99]
gi|196044653|ref|ZP_03111888.1| N utilization substance protein A [Bacillus cereus 03BB108]
gi|206978435|ref|ZP_03239302.1| N utilization substance protein A [Bacillus cereus H3081.97]
gi|217961236|ref|YP_002339804.1| transcription elongation factor NusA [Bacillus cereus AH187]
gi|218904944|ref|YP_002452778.1| N utilization substance protein A [Bacillus cereus AH820]
gi|222097260|ref|YP_002531317.1| transcription elongation factor nusa [Bacillus cereus Q1]
gi|225865795|ref|YP_002751173.1| N utilization substance protein A [Bacillus cereus 03BB102]
gi|227813276|ref|YP_002813285.1| N utilization substance protein A [Bacillus anthracis str. CDC 684]
gi|228916453|ref|ZP_04080019.1| Transcription elongation protein nusA [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228928864|ref|ZP_04091896.1| Transcription elongation protein nusA [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228947535|ref|ZP_04109825.1| Transcription elongation protein nusA [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228986959|ref|ZP_04147085.1| Transcription elongation protein nusA [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229092856|ref|ZP_04223990.1| Transcription elongation protein nusA [Bacillus cereus Rock3-42]
gi|229123329|ref|ZP_04252533.1| Transcription elongation protein nusA [Bacillus cereus 95/8201]
gi|229140457|ref|ZP_04269012.1| Transcription elongation protein nusA [Bacillus cereus BDRD-ST26]
gi|229186053|ref|ZP_04313223.1| Transcription elongation protein nusA [Bacillus cereus BGSC 6E1]
gi|229197926|ref|ZP_04324642.1| Transcription elongation protein nusA [Bacillus cereus m1293]
gi|229602496|ref|YP_002868054.1| N utilization substance protein A [Bacillus anthracis str. A0248]
gi|254721998|ref|ZP_05183787.1| transcription elongation factor NusA [Bacillus anthracis str.
A1055]
gi|254735854|ref|ZP_05193560.1| transcription elongation factor NusA [Bacillus anthracis str.
Western North America USA6153]
gi|254756007|ref|ZP_05208038.1| transcription elongation factor NusA [Bacillus anthracis str.
Vollum]
gi|254759332|ref|ZP_05211357.1| transcription elongation factor NusA [Bacillus anthracis str.
Australia 94]
gi|301055306|ref|YP_003793517.1| transcription elongation factor NusA [Bacillus anthracis CI]
gi|30258463|gb|AAP27682.1| N utilization substance protein A [Bacillus anthracis str. Ames]
gi|42738831|gb|AAS42759.1| N utilization substance protein A [Bacillus cereus ATCC 10987]
gi|47504391|gb|AAT33067.1| N utilization substance protein A [Bacillus anthracis str. 'Ames
Ancestor']
gi|47554255|gb|EAL12617.1| transcription termination factor nusA [Bacillus cereus G9241]
gi|49180593|gb|AAT55969.1| N utilization substance protein A [Bacillus anthracis str. Sterne]
gi|49330968|gb|AAT61614.1| N utilization substance protein A [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|51975143|gb|AAU16693.1| N utilization substance protein A [Bacillus cereus E33L]
gi|118418261|gb|ABK86680.1| N utilization substance protein A [Bacillus thuringiensis str. Al
Hakam]
gi|164711651|gb|EDR17197.1| N utilization substance protein A [Bacillus anthracis str. A0488]
gi|167512188|gb|EDR87565.1| N utilization substance protein A [Bacillus anthracis str. A0193]
gi|170128288|gb|EDS97157.1| N utilization substance protein A [Bacillus anthracis str. A0389]
gi|172082415|gb|EDT67480.1| N utilization substance protein A [Bacillus anthracis str. A0174]
gi|190560473|gb|EDV14451.1| N utilization substance protein A [Bacillus anthracis
Tsiankovskii-I]
gi|196024688|gb|EDX63360.1| N utilization substance protein A [Bacillus cereus 03BB108]
gi|196027028|gb|EDX65652.1| N utilization substance protein A [Bacillus cereus NVH0597-99]
gi|206743350|gb|EDZ54790.1| N utilization substance protein A [Bacillus cereus H3081.97]
gi|217063696|gb|ACJ77946.1| N utilization substance protein A [Bacillus cereus AH187]
gi|218538022|gb|ACK90420.1| N utilization substance protein A [Bacillus cereus AH820]
gi|221241318|gb|ACM14028.1| N utilization substance protein A [Bacillus cereus Q1]
gi|225790987|gb|ACO31204.1| N utilization substance protein A [Bacillus cereus 03BB102]
gi|227004195|gb|ACP13938.1| N utilization substance protein A [Bacillus anthracis str. CDC 684]
gi|228585644|gb|EEK43746.1| Transcription elongation protein nusA [Bacillus cereus m1293]
gi|228597472|gb|EEK55122.1| Transcription elongation protein nusA [Bacillus cereus BGSC 6E1]
gi|228643018|gb|EEK99294.1| Transcription elongation protein nusA [Bacillus cereus BDRD-ST26]
gi|228660105|gb|EEL15741.1| Transcription elongation protein nusA [Bacillus cereus 95/8201]
gi|228690478|gb|EEL44261.1| Transcription elongation protein nusA [Bacillus cereus Rock3-42]
gi|228772737|gb|EEM21177.1| Transcription elongation protein nusA [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228812055|gb|EEM58386.1| Transcription elongation protein nusA [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228830671|gb|EEM76276.1| Transcription elongation protein nusA [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228843032|gb|EEM88114.1| Transcription elongation protein nusA [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|229266904|gb|ACQ48541.1| N utilization substance protein A [Bacillus anthracis str. A0248]
gi|300377475|gb|ADK06379.1| transcription elongation factor NusA [Bacillus cereus biovar
anthracis str. CI]
gi|324327710|gb|ADY22970.1| transcription elongation factor NusA [Bacillus thuringiensis
serovar finitimus YBT-020]
Length = 368
Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats.
Identities = 146/363 (40%), Positives = 223/363 (61%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + EK I +D+++ + ++ A + + ++RV NP+ G I + +
Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPQVGTIQVLARKD 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I
Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V + +
Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVHAENID 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V KV++DE+
Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEEEKA 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + + F
Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDSVVAFGFDSV 363
Query: 368 VDE 370
DE
Sbjct: 364 EDE 366
>gi|150390438|ref|YP_001320487.1| NusA antitermination factor [Alkaliphilus metalliredigens QYMF]
gi|149950300|gb|ABR48828.1| NusA antitermination factor [Alkaliphilus metalliredigens QYMF]
Length = 346
Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats.
Identities = 148/344 (43%), Positives = 233/344 (67%)
Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66
LE ++ + + +K I RDV+ + ++ + + +G+ ++RVE+ +TGD+ ++
Sbjct: 3 LEFIEALEQIEKDKGISRDVLFDALEAALISSYKRNFGSAVNVRVEMLRDTGDVHVYSQK 62
Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
+VVE VE+ +I++ A++ DP+ + +V + P +FGR+A Q+AKQV++Q++REAE
Sbjct: 63 KVVEVVEDDLLEINIDEAKEIDPNYALDDIVEKQVTPRNFGRIAAQTAKQVVVQRIREAE 122
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
R Y EF ++ EII+GTV RV GNV ++LG ++ ++ +E I E DR+K+YI
Sbjct: 123 RGIVYEEFINRESEIITGTVSRVAKGNVYINLGKTEAILGPNEQIPNEVYNHADRIKTYI 182
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
+V+ +GPQ+ +SRTHP + +LF +EVPEI++G+V+VK++SR+ GSR K+AVFS D
Sbjct: 183 VEVKNTTKGPQIHVSRTHPGLVKRLFELEVPEIHDGVVEVKSISREAGSRTKIAVFSIDE 242
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
++DPVGACVG +GSRVQ +V EL+ EKIDI+ +S + F+ N+L PA V ++ +
Sbjct: 243 NVDPVGACVGPKGSRVQMIVDELKGEKIDIIKYSEEPKEFISNSLSPAKVLNARVNPEDK 302
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350
VIVP QLSLAIG+ GQN RLA++LTGW IDI +E + +
Sbjct: 303 TARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQVKTD 346
>gi|167627171|ref|YP_001677671.1| transcription elongation factor NusA [Francisella philomiragia
subsp. philomiragia ATCC 25017]
gi|167597172|gb|ABZ87170.1| transcription elongation factor [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 489
Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats.
Identities = 164/515 (31%), Positives = 292/515 (56%), Gaps = 38/515 (7%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + + VA EK I +D++ M +++ + +I V+I+ TGD R+
Sbjct: 4 ELLLVLETVANEKDISKDLLFEAMEEALAIITKKELDEHMNIEVKIDRVTGDFKADRVWH 63
Query: 68 VV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
+V E++ +Y+ ++ VA+++ ++ G V+ + + ++GR+A AKQ++++K++
Sbjct: 64 IVSEDEDLIDYSKELYEDVAQEKGYNVKAGDVIRESVEVKEYGRIAATMAKQILMKKIKN 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVK 183
ER++ ++ K+G+I+ G VKR Y +++DLGN+ +G++ + + ISRE R GD+++
Sbjct: 124 FEREKTARFYQSKIGDIVYGEVKRATYEILVIDLGNNAEGILPKKDLISRERFRVGDKIR 183
Query: 184 SYIY--DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
S + +V + V+LSR + LF +EVPE+ ++ V V R+PG R+K+ V
Sbjct: 184 SCVESVEVDEFGKPSTVMLSRASNMMLKALFKLEVPEVEEELINVVNVVREPGFRSKVTV 243
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP---AIVTK 298
S+D IDP GACVG+RGSR+ ++++EL EK+D+++W D + IN+L P + +
Sbjct: 244 KSNDQRIDPCGACVGVRGSRIHSIMSELNGEKVDVILWDEDMVQYAINSLSPVDSEDILE 303
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
V +DE+ ++++V +E LS AIG+ G NVRLAS L GW I+++++ E +
Sbjct: 304 VNVDEETNSMDIVVKQESLSKAIGKNGVNVRLASALIGWKINVLSDTEQEEKQ----MSI 359
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
+ F++A+++D A +L+ EG +E+LA + E+ IEGFDEE E+Q RA+ +
Sbjct: 360 VEKFVEALDIDHDFALVLIEEGIETLEDLAYLDRDELLEIEGFDEEIVDELQERAKAVIL 419
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ +E+L ++ G++ ++ L +N I TME+LA SVD+LL
Sbjct: 420 SQA------LGGKKPAEDLLNMQGMNQELADKLAQNNIVTMENLAELSVDELLDI----- 468
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
+ + Q +I+ AR W E
Sbjct: 469 ------------VAIDEKQATDLIMQARAP--WFE 489
>gi|163941553|ref|YP_001646437.1| transcription elongation factor NusA [Bacillus weihenstephanensis
KBAB4]
gi|229061419|ref|ZP_04198764.1| Transcription elongation protein nusA [Bacillus cereus AH603]
gi|229134623|ref|ZP_04263433.1| Transcription elongation protein nusA [Bacillus cereus BDRD-ST196]
gi|229168555|ref|ZP_04296278.1| Transcription elongation protein nusA [Bacillus cereus AH621]
gi|163863750|gb|ABY44809.1| NusA antitermination factor [Bacillus weihenstephanensis KBAB4]
gi|228614961|gb|EEK72063.1| Transcription elongation protein nusA [Bacillus cereus AH621]
gi|228648884|gb|EEL04909.1| Transcription elongation protein nusA [Bacillus cereus BDRD-ST196]
gi|228717842|gb|EEL69490.1| Transcription elongation protein nusA [Bacillus cereus AH603]
Length = 368
Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats.
Identities = 148/363 (40%), Positives = 223/363 (61%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + EK I +D+++ + ++ A + + ++RV NPE G I + +
Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKD 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I
Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V++ +
Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVYAENID 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVG+CVG +G RVQ VV EL+ EKIDIV WS D +V NAL P+ V KV++DE
Sbjct: 244 VDPVGSCVGPKGQRVQRVVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEAEKA 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + + F
Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDSVIAFGFDSA 363
Query: 368 VDE 370
DE
Sbjct: 364 EDE 366
>gi|228935130|ref|ZP_04097957.1| Transcription elongation protein nusA [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228824495|gb|EEM70300.1| Transcription elongation protein nusA [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
Length = 368
Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats.
Identities = 146/363 (40%), Positives = 223/363 (61%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + EK I +D+++ + ++ A + + ++RV NP+ G I + +
Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPQVGTIQVLARKD 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I
Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V + +
Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVHAENID 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V KV++DE+
Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIDIVRWSNDPVEYVANALSPSQVLKVLVDEEEKA 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + + F
Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDSVVAFGFDSV 363
Query: 368 VDE 370
DE
Sbjct: 364 EDE 366
>gi|108759193|ref|YP_630295.1| transcription termination factor NusA [Myxococcus xanthus DK 1622]
gi|108463073|gb|ABF88258.1| transcription termination factor NusA [Myxococcus xanthus DK 1622]
Length = 566
Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats.
Identities = 192/496 (38%), Positives = 281/496 (56%), Gaps = 47/496 (9%)
Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70
+ D VA +K IDR V+++ + D+++ AA+ +G ++ + +P+ G + LF+ + VVE
Sbjct: 14 LVLDQVAKDKGIDRAVLIATLEDAMKTAAKKHFGQDRELEAKYDPDKGVVELFQAITVVE 73
Query: 71 EVENYT---CQISLKVARDRDPSIDIGGVVSDPLPPMD---------------------- 105
E+ + QISL A + ++ G + + D
Sbjct: 74 EIVDPVQAVNQISLVEAHKKGMEVEPGDELVFQIFYRDEDAAEAKAQDDQYGDILRLKTF 133
Query: 106 ---FGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSD 162
FGR+A Q+AKQVI+Q+ R+AER+ + E++D+ EI++G +R E GN+IVDLG ++
Sbjct: 134 RRGFGRIAAQTAKQVILQRTRDAERENVFNEYRDRKNEIVTGIARRFERGNIIVDLGRAE 193
Query: 163 GVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNG 222
V+ E + RE RPGDRV++Y+ DV RE +GPQ++LSR + KLF MEVPEI G
Sbjct: 194 AVLPVREQVPRETYRPGDRVQAYVLDVLRESKGPQIVLSRASVNLLTKLFEMEVPEIAEG 253
Query: 223 IVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPD 282
IV ++A +R+PG RAK+AV S DS +DPVGACVGM+GSRVQAVV ELR EKIDIV + D
Sbjct: 254 IVVIEAAAREPGGRAKIAVSSRDSDVDPVGACVGMKGSRVQAVVQELRGEKIDIVPFDED 313
Query: 283 SATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342
A FV +AL PA V++V++DE +E+IVP +QLSLAIGRRGQNVRLA+QLTGW +DI
Sbjct: 314 PARFVCSALAPAEVSRVIIDEANHAMELIVPDDQLSLAIGRRGQNVRLAAQLTGWKLDIN 373
Query: 343 TEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD 402
+E R+ V+E++ L A GF ++A +A + G D
Sbjct: 374 SESRVRELREFANRSLGSLP----GVNEMLVETLYAHGFRQARDIAEANAELLAQLPGID 429
Query: 403 EETAVEIQGRAR-------------EYLEGIDITLQKKI--RELGVSEELCSIPGIDSKI 447
+Q AR +Y + + EL E + + G+ K
Sbjct: 430 PARIPSMQEAARTRMVEDQAELSRMDYEREQARIAEARRHPDELSQPERMARVRGVGEKT 489
Query: 448 KVALGENGIKTMEDLA 463
L G +++ED+A
Sbjct: 490 IEQLILAGYRSVEDIA 505
>gi|229019010|ref|ZP_04175852.1| Transcription elongation protein nusA [Bacillus cereus AH1273]
gi|229162752|ref|ZP_04290709.1| Transcription elongation protein nusA [Bacillus cereus R309803]
gi|228620634|gb|EEK77503.1| Transcription elongation protein nusA [Bacillus cereus R309803]
gi|228742338|gb|EEL92496.1| Transcription elongation protein nusA [Bacillus cereus AH1273]
Length = 368
Score = 363 bits (931), Expect = 5e-98, Method: Composition-based stats.
Identities = 147/363 (40%), Positives = 224/363 (61%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + EK I +D+++ + ++ A + + ++RV NPE G I + +
Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKD 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I
Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V++ +
Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVYAENID 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V KV++DE+
Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEEEKA 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + + F
Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDSVIAFGFDSV 363
Query: 368 VDE 370
DE
Sbjct: 364 EDE 366
>gi|206602206|gb|EDZ38688.1| Transcription termination factor (NusA) [Leptospirillum sp. Group
II '5-way CG']
Length = 452
Score = 363 bits (931), Expect = 5e-98, Method: Composition-based stats.
Identities = 172/431 (39%), Positives = 257/431 (59%), Gaps = 19/431 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
ELL + D + EK I ++ ++ + ++ AAR YG + +VEINP TG++ + ++
Sbjct: 3 NQELLSVIDQLHREKGISQETLIVALESALLAAARKRYGGGDNFQVEINPRTGEVQVLQI 62
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+VE+VE+ + +ISL A + DP ++G + L DFGR+A Q+AKQV+ QKVREA
Sbjct: 63 RRIVEQVESPSEEISLAEALESDPEAEVGDEIGSYLEIDDFGRIAAQAAKQVMFQKVREA 122
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
E D EF + G+I++G + E N IVDLG ++ V+ E + RE+ R GDR+K+
Sbjct: 123 EWDVVTKEFGGRQGDIVNGVIIGHERKNYIVDLGKTEAVLPLREQMPRESFRRGDRIKAL 182
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ D+R RGPQ++LSRTHP F+ +LF EVPEI GI++V+ V R+PG RAK+AV+S D
Sbjct: 183 LLDMRTTSRGPQLVLSRTHPDFVSRLFEKEVPEIAEGILEVRNVVREPGERAKIAVYSRD 242
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED- 304
++DPVG+CVG++G RVQAVV EL EK+DI+ WSPD +TF+ AL PA +V + +
Sbjct: 243 PNVDPVGSCVGVKGVRVQAVVRELHGEKVDIIEWSPDPSTFIARALSPAKAVRVSIKDMG 302
Query: 305 -VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ--- 360
V+V QLSLAIGRRG NVRLA++LTGW +DI +E + D
Sbjct: 303 TEKVATVVVQDSQLSLAIGRRGHNVRLAAKLTGWKVDIFSETQMQSEAGLDERAERVASL 362
Query: 361 --------------FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406
V +A +L GF ++ +A + I+++ F +TA
Sbjct: 363 AETLGSQSGDTSLLRIEDLPGVGGNMAEILRDAGFDTLQAIAHASVEAISALPKFGPKTA 422
Query: 407 VEIQGRAREYL 417
++ A+++L
Sbjct: 423 AKLIQTAQDFL 433
>gi|229031446|ref|ZP_04187446.1| Transcription elongation protein nusA [Bacillus cereus AH1271]
gi|229098285|ref|ZP_04229232.1| Transcription elongation protein nusA [Bacillus cereus Rock3-29]
gi|229104378|ref|ZP_04235047.1| Transcription elongation protein nusA [Bacillus cereus Rock3-28]
gi|229117302|ref|ZP_04246680.1| Transcription elongation protein nusA [Bacillus cereus Rock1-3]
gi|229174482|ref|ZP_04302014.1| Transcription elongation protein nusA [Bacillus cereus MM3]
gi|228609042|gb|EEK66332.1| Transcription elongation protein nusA [Bacillus cereus MM3]
gi|228666202|gb|EEL21666.1| Transcription elongation protein nusA [Bacillus cereus Rock1-3]
gi|228679076|gb|EEL33284.1| Transcription elongation protein nusA [Bacillus cereus Rock3-28]
gi|228685183|gb|EEL39114.1| Transcription elongation protein nusA [Bacillus cereus Rock3-29]
gi|228729735|gb|EEL80715.1| Transcription elongation protein nusA [Bacillus cereus AH1271]
Length = 368
Score = 363 bits (931), Expect = 5e-98, Method: Composition-based stats.
Identities = 147/363 (40%), Positives = 223/363 (61%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + EK I +D+++ + ++ A + + ++RV NPE G I + +
Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKD 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I
Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V + +
Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVHAENID 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V KV++DE+
Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEEEKA 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + + F
Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDSVIAFGFDSV 363
Query: 368 VDE 370
DE
Sbjct: 364 EDE 366
>gi|23099050|ref|NP_692516.1| transcription elongation factor NusA [Oceanobacillus iheyensis
HTE831]
gi|22777278|dbj|BAC13551.1| transcriptional termination-antitermination factor [Oceanobacillus
iheyensis HTE831]
Length = 364
Score = 363 bits (931), Expect = 5e-98, Method: Composition-based stats.
Identities = 148/360 (41%), Positives = 232/360 (64%)
Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66
++L + +A EK ID+D+++ + ++ A + + + S++RVE+N ETG ++++
Sbjct: 3 MQLFDAIENLAKEKGIDKDILMEALEAALISAYKKNFKSASNVRVELNEETGKMAVYARK 62
Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
VV+E+E+ +I L A+ DP+ ++ V+ + P DFGR+A Q+AKQV+ Q+VREAE
Sbjct: 63 TVVDEIEDVQQEIPLDEAKKIDPNYEVDDVIEVEVTPKDFGRIAAQAAKQVVTQRVREAE 122
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
R + E+ D+ ++++G ++R + V V+LG + + E + E+ DR+K ++
Sbjct: 123 RGVIFSEYVDREEDVMTGIIQRKDPRFVYVNLGKIEAKLAESEQMPTEDYHVHDRLKVFV 182
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
V +GPQ+ +SR+HP + +LF MEVPEIY+G V++K+V+R+ G R+K++V++ D
Sbjct: 183 TKVENTSKGPQIFISRSHPGLLKRLFEMEVPEIYDGTVEIKSVAREAGDRSKISVYAPDP 242
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVG+CVG RG RVQA+VTEL+ EKIDIV WS D +V NAL P+ V KV ++E+
Sbjct: 243 EIDPVGSCVGQRGQRVQAIVTELKGEKIDIVQWSEDPVVYVSNALSPSKVVKVSVNEEEK 302
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
V+VP QLSLAIG+RGQN RLA++LTGW IDI +E E D E +
Sbjct: 303 STTVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESEAREEGLLDDGESYSDNENDL 362
>gi|89257073|ref|YP_514435.1| transcription elongation factor NusA [Francisella tularensis subsp.
holarctica LVS]
gi|115315429|ref|YP_764152.1| transcription elongation factor NusA [Francisella tularensis subsp.
holarctica OSU18]
gi|156503283|ref|YP_001429348.1| transcription elongation factor NusA [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|167009460|ref|ZP_02274391.1| transcription termination factor NusA [Francisella tularensis
subsp. holarctica FSC200]
gi|290954351|ref|ZP_06558972.1| transcription elongation factor NusA [Francisella tularensis subsp.
holarctica URFT1]
gi|295312215|ref|ZP_06803015.1| transcription elongation factor NusA [Francisella tularensis subsp.
holarctica URFT1]
gi|89144904|emb|CAJ80249.1| N utilization substance protein A [Francisella tularensis subsp.
holarctica LVS]
gi|115130328|gb|ABI83515.1| N utilization substance protein A [Francisella tularensis subsp.
holarctica OSU18]
gi|156253886|gb|ABU62392.1| transcription termination factor NusA [Francisella tularensis
subsp. holarctica FTNF002-00]
Length = 489
Score = 363 bits (931), Expect = 6e-98, Method: Composition-based stats.
Identities = 159/515 (30%), Positives = 294/515 (57%), Gaps = 38/515 (7%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + + VA EK I +D++ M +++ + +I V+I+ TGD R+
Sbjct: 4 ELLLVLETVANEKDISKDLLFEAMEEALAIITKKELDEHMNIEVKIDRVTGDFKADRVWH 63
Query: 68 VV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
+V E++ +Y+ ++ V +++ ++ G V+ +P+ ++GR+A AKQ++++K++
Sbjct: 64 IVSEDEDLIDYSKELYEDVVQEKGYNVKAGDVMREPVEIKEYGRIAATMAKQILMKKIKN 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVK 183
ER++ +++K+G+I+ G +KR Y ++VDLGN+ +G++ + + I+RE R GD+++
Sbjct: 124 FEREKSARFYQNKIGDIVYGEIKRATYEILVVDLGNNAEGILPKKDLIARERYRVGDKIR 183
Query: 184 SYIY--DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+ + + + ++LSR+ + LF +EVPE+ ++ + V R+ G R+K+ V
Sbjct: 184 ACVEAVESDESGKPNTIMLSRSSNTMLKALFKLEVPEVEEELINIVNVVREHGFRSKVTV 243
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP---AIVTK 298
S+D IDP GACVG+RGSR+ ++++EL EK+D+++W+ D + IN+L P A + +
Sbjct: 244 KSNDQRIDPCGACVGVRGSRIHSIMSELNGEKVDVILWNEDMVQYAINSLSPVDAADILE 303
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
V +DE+ ++++V +E LS AIG+ G NVRLAS L GW I+++++ E +
Sbjct: 304 VNVDEETNSMDIVVKQESLSKAIGKNGVNVRLASSLIGWKINVLSDAEQEEKQ----MSI 359
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
+ F++A+++D A +L+ EG +E+LA + +E+ IEGFDEE E+Q RA+ +
Sbjct: 360 VEKFVEALDIDHNFALVLIEEGIETLEDLAYLDRAELLEIEGFDEEIVDELQERAKAVIL 419
Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478
+ +++L + G+ + L +N I TMEDLA SVD+LL
Sbjct: 420 SQA------LGGKKPAQDLLDMQGMSLDLAEQLAQNNIVTMEDLAELSVDELLDI----- 468
Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
+ ++Q ++I+ AR W E
Sbjct: 469 ------------VDIDEEQATNLIMQARAP--WFE 489
>gi|30021905|ref|NP_833536.1| transcription elongation factor NusA [Bacillus cereus ATCC 14579]
gi|229129092|ref|ZP_04258065.1| Transcription elongation protein nusA [Bacillus cereus BDRD-Cer4]
gi|29897461|gb|AAP10737.1| N utilization substance protein A [Bacillus cereus ATCC 14579]
gi|228654329|gb|EEL10194.1| Transcription elongation protein nusA [Bacillus cereus BDRD-Cer4]
Length = 368
Score = 363 bits (931), Expect = 6e-98, Method: Composition-based stats.
Identities = 146/363 (40%), Positives = 224/363 (61%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + EK I +D+++ + ++ A + + ++RV NPE G I + +
Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKD 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I
Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V++ ++
Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVYAENTD 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVG+CVG +G RVQ +V EL+ EKI IV WS D +V NAL P+ V KV++DE+
Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIAIVRWSNDPVEYVANALSPSQVVKVLVDEEEKA 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + + F
Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDSVIAFGFDSV 363
Query: 368 VDE 370
DE
Sbjct: 364 EDE 366
>gi|51892657|ref|YP_075348.1| transcription elongation factor NusA [Symbiobacterium thermophilum
IAM 14863]
gi|51856346|dbj|BAD40504.1| transcriptional termination-antitermination factor [Symbiobacterium
thermophilum IAM 14863]
Length = 360
Score = 362 bits (930), Expect = 6e-98, Method: Composition-based stats.
Identities = 150/346 (43%), Positives = 228/346 (65%), Gaps = 3/346 (0%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+ E+L+ D + E+ I R+V++ + ++ A R +G+ ++RV + +TG+ ++
Sbjct: 2 KAEILEALDDLVRERGISREVLIEAIEAALISAYRRNFGSAQNVRVFFDDKTGEYRVYAQ 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
E+VEEV + Q+SL+ AR ++PS+ +G V + P DFGR+A Q+AKQV++Q++REA
Sbjct: 62 KEIVEEVTDPRLQVSLEEARMKNPSLQLGDVFEVEVTPRDFGRIAAQTAKQVVVQRIREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG---NSDGVIRRDETISRENLRPGDRV 182
ER Y E+ + GEI++G V+R + V L + V+ +E I E R+
Sbjct: 122 ERGMIYEEYSSREGEIVTGLVQRQDPKTRTVYLELARGVEAVLTANEQIPGERYVENQRI 181
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
K+Y+ +V+R +GP + +SRTHP + +LF +EVPEI++G V++K ++R+ GSR+K+AV
Sbjct: 182 KAYVIEVKRTTKGPAIAVSRTHPGLLKRLFELEVPEIHDGTVEIKGIAREAGSRSKIAVM 241
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
+ D ++DPVGACVG +G RVQ +V EL+ EKID+V WSPD FV AL PA VT+VV D
Sbjct: 242 ARDPNVDPVGACVGQKGQRVQNIVDELQGEKIDVVEWSPDPEVFVAKALSPAKVTQVVCD 301
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
E+ VIVP QLSLAIG+ GQN RLA++LTGW IDI +E +
Sbjct: 302 EESRIARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQAE 347
>gi|229157392|ref|ZP_04285470.1| Transcription elongation protein nusA [Bacillus cereus ATCC 4342]
gi|228626119|gb|EEK82868.1| Transcription elongation protein nusA [Bacillus cereus ATCC 4342]
Length = 368
Score = 362 bits (930), Expect = 7e-98, Method: Composition-based stats.
Identities = 146/363 (40%), Positives = 223/363 (61%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + EK I +D+++ + ++ A + + ++RV NP+ G I + +
Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPQVGTIQVLARKD 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I
Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V + +
Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVHAENID 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V KV++DE+
Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEEEKA 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + + F
Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDSVVAFGFDSI 363
Query: 368 VDE 370
DE
Sbjct: 364 EDE 366
>gi|42521112|ref|NP_967027.1| transcription elongation factor NusA [Wolbachia endosymbiont of
Drosophila melanogaster]
gi|42410853|gb|AAS14961.1| N utilization substance protein A [Wolbachia endosymbiont of
Drosophila melanogaster]
Length = 520
Score = 362 bits (929), Expect = 8e-98, Method: Composition-based stats.
Identities = 197/511 (38%), Positives = 324/511 (63%), Gaps = 17/511 (3%)
Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66
L++++ A ++ +K +D DVV+ + +I+ A YG+ S I V+I+ TG ++ +R L
Sbjct: 22 LDVIKTAGELSLQKGLDFDVVIKALESAIEAVAHQKYGSKSKIVVDIDRNTGKVTSYRKL 81
Query: 67 EVVEEV--ENYTCQ---ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
+V+++ E + I+L A+ +G VS L ++ + + A+Q I Q
Sbjct: 82 KVIDDESNEKENTECESITLTQAKLIKGDAKVGDTVS-ELLSLNTDLASARIAQQKIAQV 140
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
+++ E +QY EFKDKVGEI G VK+VEY ++I+D+ + + E+ R GD+
Sbjct: 141 IKDEESKKQYEEFKDKVGEIRYGIVKQVEYSDLIIDINGTRAYLPLRNLTGGESFREGDK 200
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
VK+YI V+ G Q++LSRTH F+ L + E+PEI +G+V +K ++RD GSR+K+AV
Sbjct: 201 VKAYIQTVKHSDDGRQIILSRTHEGFLEALLNQEIPEIADGLVTIKGIARDAGSRSKVAV 260
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
FS D +IDPVGACVG++G R++ ++ EL EKID++ +S D FVI A+ PA V+KV++
Sbjct: 261 FSPDKNIDPVGACVGVKGDRIKTIIHELNGEKIDVINYSSDLGQFVIKAITPAEVSKVII 320
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DE+ IE+IV ++QLSLAIG++GQNVRLAS+L GW I+I++ +++S R K+ ++ +
Sbjct: 321 DENENCIELIVAEDQLSLAIGKKGQNVRLASELVGWKIEILSTQQESERRSKELSQCSAL 380
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F +A+N++EI+ LLV EGF+ VE+++ I E+ASIEGF+E+ A E+ RA +YL+ +
Sbjct: 381 FAEALNLEEIMGQLLVTEGFSSVEDISSASIKELASIEGFNEDIANELHNRANKYLKAEN 440
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
++++ LG+ +++ ++ + K+AL ++ IKT+ED+A S + + +
Sbjct: 441 DRKIEELKSLGMEDDVINLT-LSIDNKIALSKHDIKTLEDIADLSSYEFCSILSSSSDSK 499
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512
E KD V+S+II AR K+G I
Sbjct: 500 EDL----------KDTVDSIIIEARKKLGLI 520
>gi|262197038|ref|YP_003268247.1| NusA antitermination factor [Haliangium ochraceum DSM 14365]
gi|262080385|gb|ACY16354.1| NusA antitermination factor [Haliangium ochraceum DSM 14365]
Length = 538
Score = 362 bits (929), Expect = 9e-98, Method: Composition-based stats.
Identities = 190/488 (38%), Positives = 283/488 (57%), Gaps = 39/488 (7%)
Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70
+ D V +K+I+RDV++ + +I AA+ +G ++ + N +TG + LF ++ VVE
Sbjct: 7 MVIDQVGRDKNIERDVLVQALEQAILTAAKKTFGASRELEAQYNEDTGVVDLFLIVNVVE 66
Query: 71 EVEN--YTCQISLKVARDRDPSIDIGGVVSDPL-------------------------PP 103
+ E+ Y +I+ A +IG + +
Sbjct: 67 DEEDAIYGREITAPDAETHGLEAEIGDELLFQVFYRAEDNERASEQDAKFGDLIDLKNAH 126
Query: 104 MDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG 163
FGR+A Q+AKQVI Q+VREAERD Y E+KD+ GE+I+G V+R E G+++VDLG ++
Sbjct: 127 KRFGRIAAQTAKQVIYQRVREAERDNVYNEYKDRKGELITGIVRRFERGSIVVDLGRAEA 186
Query: 164 VIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGI 223
++ + + RE+ R GD +K+Y+ D+ R RGPQ++LSRTH + KLF EVPEIY I
Sbjct: 187 ILPTRDQVPRESYRVGDSIKAYVLDIDRNARGPQIILSRTHKGLLEKLFEQEVPEIYEKI 246
Query: 224 VQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283
V++++ +R+PG+RAK+AV S D +DPVGACVGM+GSRVQAVV ELR EKIDIV + D
Sbjct: 247 VRIESSAREPGARAKIAVSSRDRDVDPVGACVGMKGSRVQAVVQELRGEKIDIVPYDEDP 306
Query: 284 ATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343
A FV NA+ PA V++V++D D R+E++VP ++LSLAIG++GQNVRLASQLTGW IDI +
Sbjct: 307 ARFVCNAIAPAEVSRVLIDADGHRMELVVPDDKLSLAIGKKGQNVRLASQLTGWRIDIHS 366
Query: 344 EEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403
E + + + +D+ +A + G+ V EL+ E+A + G D
Sbjct: 367 ESKIQDLER----RAKEQLAAVEGMDDDLADTVFRLGWRSVGELSRAAPEELAGVPGIDG 422
Query: 404 -ETAVEIQGRAREYLEGIDITLQKKIRE------LGVSEELCSIPGIDSKIKVALG-ENG 455
E ++ AR +LE + + RE L E L + + I L E
Sbjct: 423 VEVGRQVVAGARAFLEEEKLRQEHARREADRRNSLSDRERLLEVRDMSEAIADQLAEEAQ 482
Query: 456 IKTMEDLA 463
+ +EDLA
Sbjct: 483 VMRVEDLA 490
>gi|58696914|ref|ZP_00372417.1| N utilization substance protein A [Wolbachia endosymbiont of
Drosophila simulans]
gi|58698399|ref|ZP_00373311.1| N utilization substance protein A, putative [Wolbachia endosymbiont
of Drosophila ananassae]
gi|225631019|ref|YP_002727810.1| transcription elongation factor NusA [Wolbachia sp. wRi]
gi|13569584|gb|AAK31158.1|AF348330_4 N utilization substance protein A [Wolbachia sp. wRi]
gi|58535081|gb|EAL59168.1| N utilization substance protein A, putative [Wolbachia endosymbiont
of Drosophila ananassae]
gi|58536861|gb|EAL60065.1| N utilization substance protein A [Wolbachia endosymbiont of
Drosophila simulans]
gi|225593000|gb|ACN96019.1| transcription elongation factor NusA [Wolbachia sp. wRi]
Length = 520
Score = 362 bits (929), Expect = 9e-98, Method: Composition-based stats.
Identities = 195/511 (38%), Positives = 323/511 (63%), Gaps = 17/511 (3%)
Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66
L++++ A ++ +K +D DVV+ + +I+ A YG+ S I V+I+ TG ++ +R L
Sbjct: 22 LDVIKTAGELSLQKGLDFDVVIKALESAIEAVAHQKYGSKSKIVVDIDRNTGKVTSYRKL 81
Query: 67 EVVEEV--ENYTCQ---ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
+V+++ E + I+L A+ +G VS L ++ + + A+Q I Q
Sbjct: 82 KVIDDESNEKENTECESITLTQAKLIKGDAKVGDTVS-ELLSLNTDLASARIAQQTIAQI 140
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
+++ E +QY EFKDKVGEI G VK+VEY ++I+D+ + + E+ R GD+
Sbjct: 141 IKDEESKKQYEEFKDKVGEIRYGIVKQVEYSDLIIDINGTRAYLPLRNLTGGESFREGDK 200
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
VK+YI V+R G Q++LSRTH F+ L + E+PEI +G+V +K ++RD GSR+K+AV
Sbjct: 201 VKAYIQTVKRSDDGRQIILSRTHEGFLEALLNQEIPEIADGLVTIKGIARDAGSRSKVAV 260
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
FS D +IDPVGACVG++G R++ ++ EL EKID++ +S D FVI A+ PA V+KV++
Sbjct: 261 FSPDKNIDPVGACVGVKGDRIKTIIHELNGEKIDVINYSSDLGQFVIKAITPAEVSKVII 320
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DE+ IE+IV ++QLSLAIG++GQNVRLAS+L GW I+I++ +++S R K+ ++ +
Sbjct: 321 DENENCIELIVAEDQLSLAIGKKGQNVRLASELVGWKIEILSTQQESERRSKELSQCSAL 380
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F +A+N++EI+ LLV EGF+ VE+++ I E+ASIEGF+E+ A E+ RA +YL+ +
Sbjct: 381 FAEALNLEEIMGQLLVTEGFSSVEDISSASIKELASIEGFNEDIANELHNRANKYLKAEN 440
Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481
++++ LG+ +++ ++ + K+AL ++ IKT+ED+A S + + +
Sbjct: 441 DRKIEELKSLGMEDDVINLT-LSIDNKIALSKHDIKTLEDIADLSSYEFCSILSSSSDSK 499
Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512
E + +S+II AR K+G I
Sbjct: 500 EDLKDIV----------DSIIIEARKKLGLI 520
>gi|126652571|ref|ZP_01724736.1| transcription elongation factor NusA [Bacillus sp. B14905]
gi|126590699|gb|EAZ84815.1| transcription elongation factor NusA [Bacillus sp. B14905]
Length = 379
Score = 362 bits (929), Expect = 9e-98, Method: Composition-based stats.
Identities = 154/365 (42%), Positives = 231/365 (63%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
+LL +A+ +K I RDV++ + ++ A + + ++RV++N + G I +F +
Sbjct: 4 DLLDALNALEEQKGISRDVLIEAIEAALVTAYKRNFNQAQNVRVDLNLDKGSIRVFSRKD 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEVE+ QISL+ A+ +P+ + +V + P +FGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 VVEEVEDDRLQISLEDAKVINPAYQLEDIVEQEVTPRNFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y ++ D+ +I++G V+R++ N+ V LG + + +E I E RP DR+K YI
Sbjct: 124 GLIYEQYVDREDDIVTGVVERLDARNIYVGLGKVEAALPVNEQIQGETYRPHDRIKVYIT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V R RGPQV++SRTHP + +LF MEVPEIY GIV++K+++R+ G R+K++V++ +
Sbjct: 184 KVERTTRGPQVIVSRTHPGLLRRLFEMEVPEIYEGIVEIKSIAREAGDRSKISVYAHNEE 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVG+CVG +G+RVQ +V EL EKIDIV WS D FV NAL P+ V V ++E+
Sbjct: 244 VDPVGSCVGAKGARVQTIVNELNGEKIDIVEWSEDPVVFVANALSPSKVLDVQVNEEEKS 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + T +
Sbjct: 304 TTVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDARELGIYPSATSTFVPAEDEE 363
Query: 368 VDEII 372
D
Sbjct: 364 SDFDE 368
>gi|294500900|ref|YP_003564600.1| transcription termination factor NusA [Bacillus megaterium QM
B1551]
gi|295706246|ref|YP_003599321.1| transcription termination factor NusA [Bacillus megaterium DSM 319]
gi|294350837|gb|ADE71166.1| transcription termination factor NusA [Bacillus megaterium QM
B1551]
gi|294803905|gb|ADF40971.1| transcription termination factor NusA [Bacillus megaterium DSM 319]
Length = 370
Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats.
Identities = 151/367 (41%), Positives = 225/367 (61%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
EL + EK I +DV++ + ++ A + + ++RV++N E G + +F +
Sbjct: 4 ELFDALVILEKEKGISKDVIIEAIEAALISAYKRNFNQAQNVRVDLNLERGSMRVFARKD 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +IS++ A+ +P+ + VV + P DFGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 VVDEVYDPRLEISVEEAQTINPNFQLDDVVEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF D+ +I++G V+R + + V LG + ++ + E + E +P DR+K YI
Sbjct: 124 GVIYSEFSDREEDIMTGIVQRQDSRFIYVSLGKIEALLPQSEQMPNEQYKPHDRIKVYIT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SRTHP + +LF EVPEIY+G V++K+V+R+ G R+K++V S +
Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEKEVPEIYDGTVELKSVAREAGDRSKISVHSEYAE 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVG+CVG +G RVQAVV EL+ EKIDIV WS D FV NAL P+ V V++DE+
Sbjct: 244 VDPVGSCVGPKGQRVQAVVNELKGEKIDIVRWSNDPVEFVANALSPSKVVDVIVDENEKA 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
VIVP QLSLAIG+RGQN RLA++LTGW IDI ++ E N Q
Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSQSEAEQEGMVVKNSDDMLVSQHAF 363
Query: 368 VDEIIAH 374
+
Sbjct: 364 DSDEDME 370
>gi|85860522|ref|YP_462724.1| transcription elongation factor NusA [Syntrophus aciditrophicus SB]
gi|85723613|gb|ABC78556.1| transcription elongation factor [Syntrophus aciditrophicus SB]
Length = 420
Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats.
Identities = 177/419 (42%), Positives = 269/419 (64%), Gaps = 5/419 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
EL ++ + + ++ +D+ V++ + ++ AAR G DI N E G+I +F+
Sbjct: 4 ELKRLIEQMGKDRGLDKSVIIEALETAMLTAARKKLGAHVDIEAHYNDELGEIEVFQFKT 63
Query: 68 VVEEVENYTCQISLKVA-RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
VVE+V + QIS++ A RD D + G + + FGR+AVQ+AKQ+I+Q+V++AE
Sbjct: 64 VVEKVVDPDMQISIEAAHRDLDEEAEPGDSLGMKIDASTFGRIAVQTAKQIIVQRVKDAE 123
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
RD Y E+KD+ GE+++G V+R E G++IV+LG ++GVI E I RE + GDR++SYI
Sbjct: 124 RDNVYDEYKDRKGELVNGFVQRFEAGSIIVNLGRAEGVIPVSEQIHREVYKRGDRIRSYI 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
+V++ +GPQ++LSRTHP F+ LF +EVPEI G+++V V+R+PG RAK+AV + D
Sbjct: 184 CEVKKVSKGPQIILSRTHPNFLKALFEVEVPEIAEGLIEVLGVAREPGKRAKIAVRTKDK 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
IDPVGACVGMRG+RVQ+VV ELR EKIDI+ +S D + +VI+AL PA V+ V + E+
Sbjct: 244 DIDPVGACVGMRGARVQSVVQELRGEKIDIIPYSEDPSQYVISALSPAKVSHVTVYENEH 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+EV+VP +QLSLAIG+ GQNVRLA +LTGW ID+ +E D+ + D+ +
Sbjct: 304 AMEVVVPDDQLSLAIGKNGQNVRLAVKLTGWKIDVKSESVDAGSENADYRTLLKIP---- 359
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425
++E +A L +G V +A +++I G +E TA A ++ D +
Sbjct: 360 GMEEAMAERLFNKGLKSVAMVAAADPEMLSAIPGVEERTATLWIEEAGRIIDEEDAASK 418
>gi|169827165|ref|YP_001697323.1| transcription elongation factor NusA [Lysinibacillus sphaericus
C3-41]
gi|168991653|gb|ACA39193.1| Transcription elongation protein [Lysinibacillus sphaericus C3-41]
Length = 379
Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats.
Identities = 153/365 (41%), Positives = 229/365 (62%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
+LL +A+ +K I RDV++ + ++ A + + ++RV++N + G I +F +
Sbjct: 4 DLLDALNALEEQKGISRDVLIEAIEAALVTAYKRNFNQAQNVRVDLNLDKGSIRVFSRKD 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEVE+ QISL+ A+ +P+ + +V + P +FGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 VVEEVEDDRLQISLEDAKVINPAYQLEDIVEQEVTPRNFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y ++ D+ +I++G V+R++ N+ V LG + + +E I E P DR+K YI
Sbjct: 124 GLIYEQYVDREDDIVTGVVERLDARNIYVGLGKVEAALPVNEQIQGETYHPHDRIKVYIT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V R RGPQV++SRTHP + +LF MEVPEIY GIV++K+++R+ G R+K++V++ +
Sbjct: 184 KVERTTRGPQVIVSRTHPGLLRRLFEMEVPEIYEGIVEIKSIAREAGDRSKISVYAHNEE 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVG+CVG +G+RVQ +V EL EKIDIV WS D FV NAL P+ V V ++E+
Sbjct: 244 VDPVGSCVGAKGARVQTIVNELNGEKIDIVEWSEDPVVFVANALSPSKVLDVQVNEEEKS 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + T
Sbjct: 304 TTVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDARELGIYPSATSTFVPAVDEE 363
Query: 368 VDEII 372
D
Sbjct: 364 SDFEE 368
>gi|299534743|ref|ZP_07048073.1| transcription elongation factor NusA [Lysinibacillus fusiformis
ZC1]
gi|298729831|gb|EFI70376.1| transcription elongation factor NusA [Lysinibacillus fusiformis
ZC1]
Length = 379
Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats.
Identities = 154/365 (42%), Positives = 230/365 (63%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
+LL +A+ +K I RDV++ + ++ A + + ++RV++N + G I +F +
Sbjct: 4 DLLDALNALEEQKGISRDVLIEAIEAALVTAYKRNFNQAQNVRVDLNLDKGSIRVFSRKD 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEVE+ QISL+ A+ +P+ + +V + P +FGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 VVEEVEDDRLQISLEDAKVINPAYQLEDIVEQEVTPRNFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y ++ D+ +I++G V+R++ N+ V LG + + +E I E+ P DR+K YI
Sbjct: 124 GLIYEQYVDREDDIVTGVVERLDARNIYVGLGKVEAALPVNEQIQGESYHPHDRIKVYIT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V R RGPQV++SRTHP + +LF MEVPEIY GIV++K+++R+ G R+K++VF+ +
Sbjct: 184 KVERTTRGPQVIVSRTHPGLLRRLFEMEVPEIYEGIVEIKSIAREAGDRSKISVFAHNEE 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVG+CVG +G+RVQ +V EL EKIDIV WS D FV NAL P+ V V ++E+
Sbjct: 244 VDPVGSCVGAKGARVQTIVNELNGEKIDIVEWSEDPVIFVANALSPSKVLDVQVNEEEKS 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + T
Sbjct: 304 TTVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDARELGIYPSATSTFIPADDEE 363
Query: 368 VDEII 372
D
Sbjct: 364 SDFDD 368
>gi|167635811|ref|ZP_02394120.1| N utilization substance protein A [Bacillus anthracis str. A0442]
gi|170687901|ref|ZP_02879115.1| N utilization substance protein A [Bacillus anthracis str. A0465]
gi|254683477|ref|ZP_05147337.1| transcription elongation factor NusA [Bacillus anthracis str.
CNEVA-9066]
gi|254739620|ref|ZP_05197314.1| transcription elongation factor NusA [Bacillus anthracis str.
Kruger B]
gi|167528768|gb|EDR91526.1| N utilization substance protein A [Bacillus anthracis str. A0442]
gi|170668217|gb|EDT18966.1| N utilization substance protein A [Bacillus anthracis str. A0465]
Length = 368
Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats.
Identities = 146/363 (40%), Positives = 223/363 (61%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + EK I +D+++ + ++ A + + ++RV NP+ G I + +
Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPQVGIIQVLARKD 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I
Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V + +
Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVHAENID 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V KV++DE+
Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEEEKA 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + + F
Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDSVVAFGFDSV 363
Query: 368 VDE 370
DE
Sbjct: 364 EDE 366
>gi|288556945|ref|YP_003428880.1| transcription elongation factor NusA [Bacillus pseudofirmus OF4]
gi|288548105|gb|ADC51988.1| transcription elongation factor NusA [Bacillus pseudofirmus OF4]
Length = 378
Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats.
Identities = 147/365 (40%), Positives = 230/365 (63%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E + + EK I ++V++ + ++ + + ++RV++N + G I +F
Sbjct: 2 NSEFMDALTTLEKEKGISKEVIIEAIEAALISGYKRNFSQAQNVRVDVNRDNGSIRVFAR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+VEEV + +ISL A+ +P+ ++ VV + P DFGR+A Q+AKQV+ Q+VREA
Sbjct: 62 KTIVEEVFDARLEISLDEAKSINPNYEVDDVVEIEVTPKDFGRIAAQTAKQVVTQRVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y +F D+ +I++G V+R ++ + VDLG + ++ +E + E + DR+K++
Sbjct: 122 ERGIIYSDFIDREEDIMTGIVQRQDHRFIYVDLGKVEALLPLNEQMPNETYKHNDRIKAF 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I V + +GPQ+L+SRTHP + +LF +EVPEIY+G V++K+VSR+ G R+K+AV + +
Sbjct: 182 ITKVEKTTKGPQILISRTHPGLLKRLFELEVPEIYDGTVEIKSVSREAGDRSKIAVHAEN 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DPVG+CVG RG RVQ +V EL+ EKIDIV WS D +V NAL P+ V KV ++E+
Sbjct: 242 PEVDPVGSCVGPRGQRVQTIVDELKGEKIDIVRWSEDPVEYVANALSPSKVVKVNVNEEE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
+VIVP QLSLAIG+RGQN RLA++LTGW IDI +E E + + + +
Sbjct: 302 KMTQVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESEARELGLLNEEDSSASEYED 361
Query: 366 INVDE 370
+E
Sbjct: 362 PASEE 366
>gi|325138675|gb|EGC61230.1| Transcription elongation protein nusA [Neisseria meningitidis
ES14902]
Length = 413
Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats.
Identities = 186/430 (43%), Positives = 275/430 (63%), Gaps = 25/430 (5%)
Query: 91 IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVE 150
I IG + LP FGR A Q+AKQ+I+Q++R+AER++ EF +I+SGTVKRVE
Sbjct: 5 IQIGEYYEEQLPNEGFGRQAAQTAKQIILQRIRDAEREQNLNEFLAVKEDIVSGTVKRVE 64
Query: 151 YGNVIVDL--GNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR--GPQVLLSRTHPQ 206
+IV++ G D +I RD+ I REN R GDR+++ V QV+LSRT
Sbjct: 65 RHGIIVEVVAGKLDALIPRDQMIPRENFRSGDRIRALFLRVEEIGNTGRKQVILSRTSGD 124
Query: 207 FMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVV 266
F+VKL+ EVPEI +G+++++AV+RDPG RAK+AV ++D IDP G C+G+RGSRV AV
Sbjct: 125 FLVKLYANEVPEIADGMLEIRAVARDPGQRAKVAVKANDQRIDPQGTCIGVRGSRVNAVS 184
Query: 267 TELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQ 326
EL E+ID+V+WSP+ A FV++AL PA V+++V+DED ++VIV + QL+LAIGR GQ
Sbjct: 185 NELSGERIDVVLWSPEPAQFVMSALSPAEVSRIVIDEDKHAVDVIVDENQLALAIGRGGQ 244
Query: 327 NVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEE 386
NVRLAS LTGW ++I+T E + + FM +NVDE A +LV EGFA +EE
Sbjct: 245 NVRLASDLTGWQLNIMTSAEADERNAAEDAAIRRLFMDHLNVDEETADVLVQEGFATLEE 304
Query: 387 LACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSK 446
+A V +E+ +IEGFDEE ++ RAR+ + + I ++K+ E VS+++ ++ GID+
Sbjct: 305 VAYVPAAELLAIEGFDEEIVDMLRNRARDAILTMAIAAEEKLGE--VSDDMRNLEGIDAD 362
Query: 447 IKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHAR 506
+ +L E GI T +DLA +VD+L+ + G ++ +++I+ AR
Sbjct: 363 MLRSLAEAGITTRDDLAELAVDELIEIT-----------------GVNEETAKAVILTAR 405
Query: 507 YKMGWIEKEK 516
W ++K
Sbjct: 406 EH--WFTEDK 413
>gi|190571750|ref|YP_001976108.1| N utilization substance protein A [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|213019234|ref|ZP_03335041.1| N utilization substance protein A [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|190358022|emb|CAQ55491.1| N utilization substance protein A [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|212995343|gb|EEB55984.1| N utilization substance protein A [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 517
Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats.
Identities = 194/508 (38%), Positives = 323/508 (63%), Gaps = 14/508 (2%)
Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66
L++++ A ++ +K +D +++++ + +I+ A+ YG+ S I V I+ TG ++ +R L
Sbjct: 22 LDVIKTAGELSLQKGLDFNIIINALKSAIEAVAQQKYGSKSKIVVNIDRNTGKVTSYRQL 81
Query: 67 EVVEEV--ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
+V+ + EN I L A+ +G +S L ++ V+ + A+Q I + ++
Sbjct: 82 KVINDESNENECDLIKLTQAKLIKEDAKVGDTIS-ELISLNTDLVSARIAQQKISEIIKN 140
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
E +QY EFKDKVGE+ G VK+VEY ++I+D+ + I E+ R GD+VK+
Sbjct: 141 EELKKQYEEFKDKVGEMRYGIVKQVEYSDLIIDINGIGAYLPLRNLIGGESFREGDKVKA 200
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI V+R G Q++LSRTH F+ L + EVPEI +G++ +K ++RD GSR+K+AVFSS
Sbjct: 201 YIQAVKRSDDGRQIILSRTHEGFLEALLNQEVPEIADGLITIKGIARDAGSRSKIAVFSS 260
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D +IDPVGACVG++G R++ ++ EL EKID++ +S D F+I A+ PA V+KV++DE+
Sbjct: 261 DRNIDPVGACVGVKGDRIKTIIHELNGEKIDVIHYSSDLGQFIIKAITPAEVSKVIIDEN 320
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
IE+IV ++QLSLAIG++GQNVRLAS+L GW I+I++ +++S R K+F++ + F +
Sbjct: 321 ENCIELIVAEDQLSLAIGKKGQNVRLASELVGWKIEILSTQQESERRNKEFSQCSVLFAE 380
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
A+N++EI+ LLV EGF+ VE+++ I E+ASIEGF+E+ A E+ RA YL+ +
Sbjct: 381 ALNLEEIMGQLLVTEGFSSVEDISNTSIKELASIEGFNEDIANELHNRANNYLKAENDRK 440
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
++++ LG+ +++ ++ + K+AL ++ IKT+ED+A S + + N +
Sbjct: 441 IEELKNLGMEDDVINLA-LSIDNKIALSKHNIKTLEDIADLSNYEFCSILSSSTNNKDNL 499
Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512
KD + +II AR K+G I
Sbjct: 500 ----------KDTADLIIIEARKKLGLI 517
>gi|152976182|ref|YP_001375699.1| transcription elongation factor NusA [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152024934|gb|ABS22704.1| NusA antitermination factor [Bacillus cytotoxicus NVH 391-98]
Length = 366
Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats.
Identities = 143/342 (41%), Positives = 219/342 (64%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + EK I +D+++ + ++ A + + ++RV NPE G I + +
Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKD 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQNGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I
Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V++ +
Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVYAENID 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V V+++E+
Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIDIVRWSNDPVEYVANALSPSQVVSVLVNEEEKA 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
VIVP QLSLAIG+RGQN RLA++LTGW IDI +E +
Sbjct: 304 TTVIVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQ 345
>gi|75760860|ref|ZP_00740874.1| N utilization substance protein A [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228902319|ref|ZP_04066476.1| Transcription elongation protein nusA [Bacillus thuringiensis IBL
4222]
gi|74491644|gb|EAO54846.1| N utilization substance protein A [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228857288|gb|EEN01791.1| Transcription elongation protein nusA [Bacillus thuringiensis IBL
4222]
Length = 368
Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats.
Identities = 148/363 (40%), Positives = 222/363 (61%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + EK I +D+++ + ++ A + + ++RV N E G I + +
Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNTEVGTIQVLARKD 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I
Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V + +
Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVHAENID 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVG+CVG +G RVQ VV EL+ EKIDIV WS D +V NAL P+ V KV++DED
Sbjct: 244 VDPVGSCVGPKGQRVQRVVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEDEKA 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + + F
Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDSVIAFGFDSV 363
Query: 368 VDE 370
DE
Sbjct: 364 EDE 366
>gi|69246862|ref|ZP_00604154.1| Transcription termination factor NusA [Enterococcus faecium DO]
gi|257882944|ref|ZP_05662597.1| transcription termination factor NusA [Enterococcus faecium
1,231,502]
gi|257884342|ref|ZP_05663995.1| transcription termination factor NusA [Enterococcus faecium
1,231,501]
gi|257889277|ref|ZP_05668930.1| transcription termination factor NusA [Enterococcus faecium
1,231,410]
gi|260560111|ref|ZP_05832289.1| transcription termination factor NusA [Enterococcus faecium C68]
gi|261207401|ref|ZP_05922087.1| transcription termination factor NusA [Enterococcus faecium TC 6]
gi|289566677|ref|ZP_06447094.1| transcription termination factor NusA [Enterococcus faecium
D344SRF]
gi|293560200|ref|ZP_06676702.1| transcription termination factor NusA [Enterococcus faecium E1162]
gi|293567723|ref|ZP_06679065.1| transcription termination factor NusA [Enterococcus faecium E1071]
gi|294613937|ref|ZP_06693872.1| transcription termination factor NusA [Enterococcus faecium E1636]
gi|294620763|ref|ZP_06699970.1| transcription termination factor NusA [Enterococcus faecium U0317]
gi|314937505|ref|ZP_07844838.1| transcription termination factor NusA [Enterococcus faecium
TX0133a04]
gi|314942164|ref|ZP_07849018.1| transcription termination factor NusA [Enterococcus faecium
TX0133C]
gi|314947496|ref|ZP_07850911.1| transcription termination factor NusA [Enterococcus faecium TX0082]
gi|314951483|ref|ZP_07854532.1| transcription termination factor NusA [Enterococcus faecium
TX0133A]
gi|314992573|ref|ZP_07857991.1| transcription termination factor NusA [Enterococcus faecium
TX0133B]
gi|314995492|ref|ZP_07860592.1| transcription termination factor NusA [Enterococcus faecium
TX0133a01]
gi|68195043|gb|EAN09506.1| Transcription termination factor NusA [Enterococcus faecium DO]
gi|257818602|gb|EEV45930.1| transcription termination factor NusA [Enterococcus faecium
1,231,502]
gi|257820180|gb|EEV47328.1| transcription termination factor NusA [Enterococcus faecium
1,231,501]
gi|257825637|gb|EEV52263.1| transcription termination factor NusA [Enterococcus faecium
1,231,410]
gi|260073946|gb|EEW62270.1| transcription termination factor NusA [Enterococcus faecium C68]
gi|260078292|gb|EEW65997.1| transcription termination factor NusA [Enterococcus faecium TC 6]
gi|289161536|gb|EFD09419.1| transcription termination factor NusA [Enterococcus faecium
D344SRF]
gi|291589566|gb|EFF21372.1| transcription termination factor NusA [Enterococcus faecium E1071]
gi|291593212|gb|EFF24786.1| transcription termination factor NusA [Enterococcus faecium E1636]
gi|291599743|gb|EFF30753.1| transcription termination factor NusA [Enterococcus faecium U0317]
gi|291605872|gb|EFF35304.1| transcription termination factor NusA [Enterococcus faecium E1162]
gi|313590326|gb|EFR69171.1| transcription termination factor NusA [Enterococcus faecium
TX0133a01]
gi|313592865|gb|EFR71710.1| transcription termination factor NusA [Enterococcus faecium
TX0133B]
gi|313596323|gb|EFR75168.1| transcription termination factor NusA [Enterococcus faecium
TX0133A]
gi|313599087|gb|EFR77932.1| transcription termination factor NusA [Enterococcus faecium
TX0133C]
gi|313643146|gb|EFS07726.1| transcription termination factor NusA [Enterococcus faecium
TX0133a04]
gi|313646046|gb|EFS10626.1| transcription termination factor NusA [Enterococcus faecium TX0082]
Length = 391
Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats.
Identities = 153/402 (38%), Positives = 233/402 (57%), Gaps = 19/402 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L DA+ EK I +++V+ + ++ A + YG ++ VE + + G I ++ + E
Sbjct: 4 EMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQKKGKIHVYAVKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
V EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREAER
Sbjct: 64 VTEEVMDSQLEVSLKDALLINPAYEIGDTIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y+
Sbjct: 124 TIIYNEFSAYEKDIMQGIVERQDKRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVYVS 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +GPQV +SR+HP + +LF EVPE+Y+GIV++ +++R+ G R+K+AV S+D +
Sbjct: 184 RVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGIVEIVSIAREAGDRSKVAVRSNDPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV-G 306
ID VG CVG +G RVQA+V EL+ E +DIV W+ D A F+ NAL PA V V+ DE
Sbjct: 244 IDAVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAVFIANALNPAQVMDVIFDETNPK 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
V+VP QLSLAIG+RGQN RLA++LT IDI +E + + E + Q
Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTNHKIDIKSESDMT--------EFYENQEQQK 355
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408
+E+ +V + F+ ET E
Sbjct: 356 ETEELHDEAIVQSDLT----------DDEYETIAFNNETVEE 387
>gi|89098596|ref|ZP_01171478.1| transcription elongation factor NusA [Bacillus sp. NRRL B-14911]
gi|89086558|gb|EAR65677.1| transcription elongation factor NusA [Bacillus sp. NRRL B-14911]
Length = 394
Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats.
Identities = 153/350 (43%), Positives = 228/350 (65%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + EK I RD+++ + ++ A R + ++R+++N +G + +F E
Sbjct: 4 ELLDALTLLEKEKGISRDIIIEAIEAALISAYRRNFNQAQNVRIDLNLGSGTMRVFARKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVE+V + +ISL A+ +P+ + VV + P DFGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 VVEQVFDPRLEISLDEAKGINPNYQVEDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF D+ +I++G V+R + + V LG + ++ +E + E +P DR+K +I
Sbjct: 124 GIIYSEFIDREEDIMTGIVQRQDPKFIYVSLGKIEAILPANEQMPNEQYKPHDRIKVFIT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+VSR+ G R+K++V + +S
Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEIEVPEIYDGTVEIKSVSREAGDRSKISVHADNSE 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVG+CVG +G+RVQAVV EL+ EKIDIV WSPD FV NAL P+ V V+++E+
Sbjct: 244 VDPVGSCVGPKGTRVQAVVNELKGEKIDIVKWSPDPVVFVANALSPSKVLDVIVNEEDKA 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
VIVP QLSLAIG+RGQN RLA++LTGW IDI +E E + E
Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETEARESGIFPREE 353
>gi|167465394|ref|ZP_02330483.1| transcription elongation factor NusA [Paenibacillus larvae subsp.
larvae BRL-230010]
gi|322382349|ref|ZP_08056256.1| transcription elongation factor NusA-like protein [Paenibacillus
larvae subsp. larvae B-3650]
gi|321153702|gb|EFX46077.1| transcription elongation factor NusA-like protein [Paenibacillus
larvae subsp. larvae B-3650]
Length = 365
Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats.
Identities = 149/364 (40%), Positives = 230/364 (63%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E ++ + EK I +D+++ + ++ + + + T ++RV+IN +TG I +F
Sbjct: 2 NSEFIEALSEIEREKGISKDLLIDAIEAAMISSYKRNFNTAQNVRVDINRQTGVIRVFAR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVE+V + +ISL AR+ + + +G +V + P DFGR+A Q+AKQV+ Q++REA
Sbjct: 62 KTVVEDVLDPRLEISLTAAREINQNYQLGDIVEIEVTPRDFGRIAAQTAKQVVTQRIREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y F DK +I++G V+R + + VDLG + V+ +E + E + GDRVK+Y
Sbjct: 122 ERGLIYNAFIDKEEDIVTGIVQRQDQRSYYVDLGKVEAVLPLNEVMPTEKFKHGDRVKAY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I V +GPQ++LSRTHP + +LF +EVPEI++G+V++++V+R+ G R+K+AV S +
Sbjct: 182 ITKVENTTKGPQIILSRTHPGLLKRLFELEVPEIFDGVVEIRSVAREAGFRSKIAVDSRN 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DPVG+CVG +G RVQ +V ELR EKIDIV W + +V NAL P+ V +V + ED
Sbjct: 242 EEVDPVGSCVGPKGLRVQTIVNELRGEKIDIVRWMESTEEYVANALSPSKVLEVNIFEDE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
VIVP QLSLAIG +GQN RLA++LTGW IDI +E + + + +
Sbjct: 302 KMARVIVPDYQLSLAIGIKGQNARLAAKLTGWKIDIKSETQAEQEFGRPRTSTEEMHQDS 361
Query: 366 INVD 369
I++D
Sbjct: 362 ISID 365
>gi|124515701|gb|EAY57210.1| transcription termination factor (NusA) [Leptospirillum rubarum]
Length = 452
Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats.
Identities = 171/431 (39%), Positives = 255/431 (59%), Gaps = 19/431 (4%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
ELL + D + EK I ++ ++ + ++ AAR YG + +VEINP TG++ + ++
Sbjct: 3 NQELLSVIDQLHREKGISQETLIVALESALLAAARKRYGGGDNFQVEINPRTGEVQVLQI 62
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+VE VE+ + +ISL A + DP ++G + L DFGR+A Q+AKQV+ QKVREA
Sbjct: 63 RRIVERVESPSEEISLAEALESDPEAEVGDEIGSYLEIDDFGRIAAQAAKQVMFQKVREA 122
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
E D EF + G+I++G + E N IVDLG ++ V+ E + RE+ R GDR+K+
Sbjct: 123 EWDVVTKEFGGRQGDIVNGVIIGHERKNYIVDLGKTEAVLPLREQMPRESFRRGDRIKAL 182
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ D+R RGPQ++LSRTHP F+ +LF EVPEI GI++V+ V R+PG RAK+AV+S D
Sbjct: 183 LLDMRTTSRGPQLVLSRTHPDFVSRLFEKEVPEIAEGILEVRNVVREPGERAKIAVYSRD 242
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED- 304
++DPVG+CVG++G RVQAVV EL EK+DI+ W+ D ATF+ AL PA +V + +
Sbjct: 243 PNVDPVGSCVGVKGVRVQAVVRELHGEKVDIIEWNSDPATFIARALSPAKAVRVSIKDMG 302
Query: 305 -VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ--- 360
V+V QLSLAIGRRG NVRLA++LTGW +DI +E + D
Sbjct: 303 SEKVATVVVQDSQLSLAIGRRGHNVRLAAKLTGWKVDIFSETQMQSEAGLDERAERVASL 362
Query: 361 --------------FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406
V +A +L GF ++ +A + I+++ F +TA
Sbjct: 363 AETLGSQSGDTSLLRIEDLPGVGGNMAEILRDAGFDTLQAIAHASVEAISALPKFGPKTA 422
Query: 407 VEIQGRAREYL 417
++ A+++L
Sbjct: 423 AKLIQTAQDFL 433
>gi|310641593|ref|YP_003946351.1| transcription elongation factor-like protein [Paenibacillus
polymyxa SC2]
gi|309246543|gb|ADO56110.1| Transcription elongation factor-like protein [Paenibacillus
polymyxa SC2]
Length = 365
Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats.
Identities = 144/363 (39%), Positives = 231/363 (63%)
Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66
++ ++ + + EK I +DV+ + ++ + + + T ++RV++N +G I ++
Sbjct: 3 MDFIEAMNELEREKGISKDVLFEAIEAALISSYKRNFNTAQNVRVDMNRNSGVIKVYARK 62
Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
+VEEV + +ISL AR+ +P + V + P DFGR+A Q+AKQV+ Q++REAE
Sbjct: 63 LIVEEVLDPRTEISLPAAREINPHFQLEDVAEIEVTPRDFGRIAAQTAKQVVTQRIREAE 122
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
R Y +F DK +I++GTV+R + N+ +DLG + V+ E + E DR+K+YI
Sbjct: 123 RGLIYNKFVDKEEDIVTGTVQRQDPRNIYIDLGKVEAVLPLSELMPNEKFNHLDRIKAYI 182
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
V +GPQ++LSR+HP + +LF +EVPEI++G+V++++V+R+ G R+K+AV S ++
Sbjct: 183 TKVENTTKGPQIMLSRSHPGLLKRLFELEVPEIFDGVVEIRSVAREAGFRSKIAVHSRNA 242
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
+DPVG+CVG RG+RVQ +V ELR EKIDIV +S + +V NAL P+ V +V + E+
Sbjct: 243 EVDPVGSCVGPRGTRVQTIVNELRGEKIDIVRYSDNVDEYVANALSPSKVLEVQVFEEEK 302
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
VIVP QLSLAIG +GQN RLA++LTGW IDI +E + + + ++
Sbjct: 303 MARVIVPDYQLSLAIGIKGQNARLAAKLTGWKIDIKSETQAEEELGRPRTSTDEMHQDSV 362
Query: 367 NVD 369
+VD
Sbjct: 363 SVD 365
>gi|297617185|ref|YP_003702344.1| transcription termination factor NusA [Syntrophothermus lipocalidus
DSM 12680]
gi|297145022|gb|ADI01779.1| transcription termination factor NusA [Syntrophothermus lipocalidus
DSM 12680]
Length = 350
Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats.
Identities = 147/344 (42%), Positives = 233/344 (67%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
EL+Q + E+ I ++V++ + +++ A + +G++ ++ V+++ E+G++ ++
Sbjct: 4 ELIQALGEIEKERGIPKEVLVEAIESALRTAYKKNFGSLQNVTVQMDMESGEVKVYAKKT 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
V E V++ ++ L AR+ P ++IG + + P DFGR+A Q+AKQV+IQ++REAER
Sbjct: 64 VAETVKDERLEVRLAEAREIYPEVEIGDEIDVEVTPADFGRIAAQTAKQVVIQRLREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ EF ++ GEI++GTV+RVE VI++LG ++ ++ + I E PG R+K+YI
Sbjct: 124 SIVFNEFSNRAGEIVTGTVQRVEQKTVIINLGRTEALMGSQDQIPNEAYEPGQRIKAYIS 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
+V+R +GPQ+ LSRTHP F+ +LF +EVPEIY G+V++K+++R+ GSR+K++V+S +
Sbjct: 184 EVKRSAKGPQIFLSRTHPNFLKRLFELEVPEIYEGLVEIKSIAREAGSRSKISVYSRNEK 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVGACVG +G RVQ +V EL EKIDI+ WSPD ++ NAL P+ V V E
Sbjct: 244 VDPVGACVGPKGLRVQNIVRELNGEKIDIIKWSPDIEQYIANALSPSKVVSVEASESEKM 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351
V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + R
Sbjct: 304 ARVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQVEAVR 347
>gi|261407939|ref|YP_003244180.1| NusA antitermination factor [Paenibacillus sp. Y412MC10]
gi|329929345|ref|ZP_08283098.1| transcription termination factor NusA [Paenibacillus sp. HGF5]
gi|261284402|gb|ACX66373.1| NusA antitermination factor [Paenibacillus sp. Y412MC10]
gi|328936714|gb|EGG33157.1| transcription termination factor NusA [Paenibacillus sp. HGF5]
Length = 365
Score = 360 bits (925), Expect = 3e-97, Method: Composition-based stats.
Identities = 145/363 (39%), Positives = 231/363 (63%)
Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66
++ ++ + + EK I +DV+ + ++ + + + T ++RV++N TG I +F
Sbjct: 3 MDFIEAMNELEREKGISKDVLFEAIEAALISSYKRNFNTAQNVRVDMNRNTGVIKVFARK 62
Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
+V+EV + +ISL AR+ +P I + + P DFGR+A Q+AKQV+ Q++REAE
Sbjct: 63 LIVDEVLDPRTEISLHAAREINPHFQIEDIAEIEVTPRDFGRIAAQTAKQVVTQRIREAE 122
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
R Y F DK +I++GT++R + N+ +DLG + + E + E + GDR+K+YI
Sbjct: 123 RGLIYSAFIDKEDDIVTGTLQRQDLRNIYIDLGKIEAALPLTELMPNEKFKHGDRIKAYI 182
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
V +GPQ++LSRTHP + +LF +EVPEI++G+V++++V+R+ G R+K+AV+S +
Sbjct: 183 TKVENTTKGPQIMLSRTHPGLLKRLFELEVPEIFDGVVEIRSVAREAGFRSKIAVYSRND 242
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
+DPVG+CVG +G RVQ +V ELR EKIDIV +S +V NAL P+ V +V + ED
Sbjct: 243 EVDPVGSCVGPKGLRVQTIVNELRGEKIDIVRYSDQVEEYVANALSPSKVLEVQVFEDEK 302
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
VIVP QLSLAIG +GQN RLA++LTGW IDI +E + + ++ + ++
Sbjct: 303 MARVIVPDYQLSLAIGIKGQNARLAAKLTGWKIDIKSESQAEQEFGRPKSQSGEMHQDSV 362
Query: 367 NVD 369
+VD
Sbjct: 363 SVD 365
>gi|293556649|ref|ZP_06675214.1| transcription termination factor NusA [Enterococcus faecium E1039]
gi|291601184|gb|EFF31471.1| transcription termination factor NusA [Enterococcus faecium E1039]
Length = 391
Score = 360 bits (925), Expect = 3e-97, Method: Composition-based stats.
Identities = 153/402 (38%), Positives = 233/402 (57%), Gaps = 19/402 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L DA+ EK I +++V+ + ++ A + YG ++ VE + + G I ++ + E
Sbjct: 4 EMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQKKGKIHVYAVKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
V EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREAER
Sbjct: 64 VTEEVMDSQLEVSLKDALLINPAYEIGDTIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y+
Sbjct: 124 TIIYNEFSAYEKDIMQGIVERQDKRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVYVS 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +GPQV +SR+HP + +LF EVPE+Y+GIV++ +++R+ G R+K+AV S+D +
Sbjct: 184 RVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGIVEIVSIAREAGDRSKVAVRSNDPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV-G 306
ID VG CVG +G RVQA+V EL+ E +DIV W+ D A F+ NAL PA V V+ DE
Sbjct: 244 IDAVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAVFIANALNPAQVMDVIFDETNPK 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
V+VP QLSLAIG+RGQN RLA++LT IDI +E + + E + Q
Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTNHKIDIKSESDMT--------EFYENQEQQK 355
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408
+E+ +V + F+ ET E
Sbjct: 356 EAEELHDEAIVQSDLT----------DDEYETIAFNNETVEE 387
>gi|257878526|ref|ZP_05658179.1| transcription termination factor NusA [Enterococcus faecium
1,230,933]
gi|257894715|ref|ZP_05674368.1| transcription termination factor NusA [Enterococcus faecium
1,231,408]
gi|294618723|ref|ZP_06698255.1| transcription termination factor NusA [Enterococcus faecium E1679]
gi|257812754|gb|EEV41512.1| transcription termination factor NusA [Enterococcus faecium
1,230,933]
gi|257831094|gb|EEV57701.1| transcription termination factor NusA [Enterococcus faecium
1,231,408]
gi|291595036|gb|EFF26381.1| transcription termination factor NusA [Enterococcus faecium E1679]
Length = 391
Score = 360 bits (925), Expect = 3e-97, Method: Composition-based stats.
Identities = 153/402 (38%), Positives = 234/402 (58%), Gaps = 19/402 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L DA+ EK I +++V+ + ++ A + YG ++ VE + + G I ++ + E
Sbjct: 4 EMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQKKGKIHVYAVKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
V EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREAER
Sbjct: 64 VTEEVMDSQLEVSLKDALLINPAYEIGDTIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y+
Sbjct: 124 TIIYNEFSAYEKDIMQGIVERQDKRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVYVS 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +GPQV +SR+HP + +LF EVPE+Y+GIV++ +++R+ G R+K+AV S+D +
Sbjct: 184 RVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGIVEIVSIAREAGDRSKVAVRSNDPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE-DVG 306
ID VG CVG +G RVQA+V EL+ E +DIV W+ D A F+ NAL PA V V+ DE +
Sbjct: 244 IDAVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAVFIANALNPAQVMDVIFDETNSK 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
V+VP QLSLAIG+RGQN RLA++LT IDI +E + + E + Q
Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTNHKIDIKSESDMT--------EFYENQEQQK 355
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408
+E+ +V + F+ ET E
Sbjct: 356 ETEELHDEAIVQSDLT----------DDEYETIAFNNETVEE 387
>gi|329577093|gb|EGG58566.1| transcription termination factor NusA [Enterococcus faecalis
TX1467]
Length = 399
Score = 360 bits (924), Expect = 3e-97, Method: Composition-based stats.
Identities = 147/361 (40%), Positives = 228/361 (63%), Gaps = 1/361 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L D + EK I +D V+ + ++ A + YG S++ VE P+ G+I ++ + E
Sbjct: 4 EMLNALDVLEAEKGIPKDTVIEALQAALVSAYKRHYGQASNVEVEFEPKKGNIHVYAVKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
V EEV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+VREAER
Sbjct: 64 VTEEVFDSQLEVSLKDAVALNGAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF + +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y+
Sbjct: 124 TIIYNEFSEYENDIMQGIVERQDRRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVYVS 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +GPQV +SR+HP + +LF E+PE+Y+GIV++ +V+R+ G R+K+AV S+D +
Sbjct: 184 RVENTSKGPQVFVSRSHPDLLKRLFEQEIPEVYDGIVEIVSVAREAGDRSKVAVRSTDPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV-G 306
IDPVG CVG +G RVQA+V EL+ E +DIV W+ D A ++ NAL PA V V+ D +
Sbjct: 244 IDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAIYISNALNPAQVLDVIFDPENSK 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
V+VP QLSLAIG+RGQN RLA++LTG IDI +E + + ++ N+ + +
Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTGHKIDIKSESDMAEFYEQQANQEVAEVAEEM 363
Query: 367 N 367
+
Sbjct: 364 D 364
>gi|229012999|ref|ZP_04170164.1| Transcription elongation protein nusA [Bacillus mycoides DSM 2048]
gi|228748253|gb|EEL98113.1| Transcription elongation protein nusA [Bacillus mycoides DSM 2048]
Length = 364
Score = 360 bits (924), Expect = 3e-97, Method: Composition-based stats.
Identities = 146/362 (40%), Positives = 222/362 (61%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+L + EK I +D+++ + ++ A + + ++RV NPE G I + +V
Sbjct: 1 MLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKDV 60
Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
V+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER
Sbjct: 61 VDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAERG 120
Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I
Sbjct: 121 VIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFITK 180
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V++ + +
Sbjct: 181 VEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVYAENIDV 240
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308
DPVG+CVG +G RVQ VV EL+ EKIDIV WS D +V NAL P+ V KV++DE
Sbjct: 241 DPVGSCVGPKGQRVQRVVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEAEKAT 300
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368
V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + + F
Sbjct: 301 TVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDSVIAFGFDSAE 360
Query: 369 DE 370
DE
Sbjct: 361 DE 362
>gi|298528714|ref|ZP_07016118.1| NusA antitermination factor [Desulfonatronospira thiodismutans
ASO3-1]
gi|298512366|gb|EFI36268.1| NusA antitermination factor [Desulfonatronospira thiodismutans
ASO3-1]
Length = 432
Score = 360 bits (924), Expect = 4e-97, Method: Composition-based stats.
Identities = 162/404 (40%), Positives = 259/404 (64%), Gaps = 5/404 (1%)
Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66
LEL +I D ++ +K IDRD+++ + ++++ + YG+ DI V N + G+I +++
Sbjct: 3 LELKKIIDQISKDKGIDRDMLVDTLEEAVRSSVYKKYGSNLDIEVNFNEDNGEIEVYQFK 62
Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
VV+E+ + +I L+ A++ DP++ + + L D GR+A QSAKQV++QK+R+AE
Sbjct: 63 VVVDEIGDPNNEILLEDAKEHDPNVQLEDELGFTLDVKDLGRIAAQSAKQVLMQKMRDAE 122
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
++ Y E+KD++GEIISG ++R + I++LG ++ ++ RDE I +E GDRV++YI
Sbjct: 123 QEIIYEEYKDRIGEIISGIIQRRDRAGWIINLGRTEALLPRDEQIPKERFHRGDRVEAYI 182
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
DVRRE R PQ+++SR+HP++++ LF EVPEI +G +++ V RDPG RAK+ V + D
Sbjct: 183 IDVRRESRTPQIIVSRSHPEYLISLFKREVPEISDGTIKIMNVVRDPGKRAKVGVMTKDM 242
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
+DPVGACVG++GSR+ +V EL+ E+IDIV+WSPD AT+ NAL PA +T++ +DED
Sbjct: 243 DVDPVGACVGVKGSRIHNIVQELKGERIDIVIWSPDIATYAANALSPARITRITVDEDEK 302
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+EV+VP +QL+ AIG++GQNV+LAS L GW ID+ TE + + I
Sbjct: 303 SLEVVVPDDQLTPAIGQKGQNVKLASSLLGWKIDVYTESRYNEVYEHHQVMEQLASAAGI 362
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410
++ E EGF ++ L E+ +E ++
Sbjct: 363 SISEFN-----REGFDSLDSLVQSTDEELKQKLDLSDENLESLK 401
>gi|229086368|ref|ZP_04218545.1| Transcription elongation protein nusA [Bacillus cereus Rock3-44]
gi|228696980|gb|EEL49788.1| Transcription elongation protein nusA [Bacillus cereus Rock3-44]
Length = 366
Score = 360 bits (923), Expect = 4e-97, Method: Composition-based stats.
Identities = 144/342 (42%), Positives = 220/342 (64%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + EK I +D+++ + ++ A + + ++RV NPE G I + +
Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKD 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 VVSNVFDPRLEISVEEARQMNPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I
Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++++V+R+ G R+K++V++ ++
Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEIEVPEIYDGTVEIRSVAREAGDRSKISVYAENTD 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V KV++DED
Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEDEKA 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
V+VP QLSLAIG+RGQN RLA++LTGW IDI +E +
Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQ 345
>gi|196229760|ref|ZP_03128624.1| NusA antitermination factor [Chthoniobacter flavus Ellin428]
gi|196226086|gb|EDY20592.1| NusA antitermination factor [Chthoniobacter flavus Ellin428]
Length = 421
Score = 359 bits (922), Expect = 6e-97, Method: Composition-based stats.
Identities = 168/416 (40%), Positives = 265/416 (63%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L D +K I R+V+L + +++ AAR G D+RV+I+P++G++ ++
Sbjct: 3 NSEILAGLDFFERDKGIKREVLLEAINNAVLAAARKAVGPAKDLRVDIDPKSGEMKVYAK 62
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
L VVE+VEN +I L +A+ + +G + P+ P DFGR+A Q+AKQ ++Q++R+A
Sbjct: 63 LIVVEKVENKHDEIKLDLAKKFKNDVQLGEELEVPVTPRDFGRIAAQTAKQAMMQRIRQA 122
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
E++ Y EFKD+ GEI+SGTV+R E +V+VDLG + V+ E + E+ GDR+++Y
Sbjct: 123 EKEMIYDEFKDRAGEIVSGTVRRFERLDVVVDLGKFEAVMPNKERVQTEDYNVGDRIRAY 182
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ V+ RGP++++SR+HP F+ +LF EV EI + V++K ++R+ G R K+AV+S++
Sbjct: 183 VVAVQNGARGPEIIISRSHPNFVRRLFETEVSEIADRTVEIKGIAREAGHRTKIAVWSAN 242
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DPVGACVGMRG+RV+ +V EL +EK+DI+ WS D+ FV+ AL+PA V V LDE
Sbjct: 243 DKVDPVGACVGMRGARVKNIVRELNNEKVDIIRWSSDTKEFVLEALKPAKVKSVTLDESK 302
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
I + V ++QLSLAIG+RGQN RL S+LTGW I+I ++ + + + + A
Sbjct: 303 KNILIKVDEDQLSLAIGKRGQNARLTSRLTGWDINIEQDKSVIEDFNERVGKAAKTLADA 362
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
+ +D+ +A LV G + +E L V+ +IA G E A EIQ A+ +
Sbjct: 363 LGIDQAVAVSLVKGGLSTLETLTEVEPQDIADTVGIPLEKATEIQTAAKRASGSLA 418
>gi|327441013|dbj|BAK17378.1| transcription elongation factor [Solibacillus silvestris StLB046]
Length = 375
Score = 359 bits (921), Expect = 7e-97, Method: Composition-based stats.
Identities = 148/361 (40%), Positives = 230/361 (63%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL A+ +K I RDV++ + ++ A + + ++RV++N +TG + ++ +
Sbjct: 4 ELLDALTALEEQKGISRDVLIEAIEAALVTAYKRNFNQAQNVRVDLNLQTGSMVVYSRKD 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEVE+ +I+L+ A+ + + +IG VV + + P +FGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 VVEEVEDDRLEIALEDAKFINAAYEIGDVVEEEVTPRNFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y E+ D+ +I++G ++R + N+ V +G + + +E I E +P R++ YI
Sbjct: 124 GLIYEEYVDREDDIVTGVIERQDARNIYVSIGKVEAALPVNEQIQGEVYKPTSRIRVYIT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V R RGPQV++SRTHP + +LF MEVPEIY+G V++K+++R+ G R+K++V++ +
Sbjct: 184 KVERTTRGPQVIVSRTHPGLLRRLFEMEVPEIYDGTVEIKSIAREAGDRSKISVYAHNEE 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVG+CVG +G+RVQ +V EL EKIDIV WS D FV NAL P+ V V ++E+
Sbjct: 244 VDPVGSCVGAKGARVQTIVNELNGEKIDIVEWSEDPVVFVANALSPSKVLDVQVNEEEKS 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + T +
Sbjct: 304 TTVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDARELGIYPSETSTFVPREDAE 363
Query: 368 V 368
Sbjct: 364 E 364
>gi|308068697|ref|YP_003870302.1| transcription elongation protein nusA [Paenibacillus polymyxa E681]
gi|305857976|gb|ADM69764.1| Transcription elongation protein nusA [Paenibacillus polymyxa E681]
Length = 365
Score = 359 bits (921), Expect = 7e-97, Method: Composition-based stats.
Identities = 143/363 (39%), Positives = 231/363 (63%)
Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66
++ ++ + + EK I +DV+ + ++ + + + T ++RV++N +G I ++
Sbjct: 3 MDFIEAMNELEREKGISKDVLFEAIEAALISSYKRNFNTAQNVRVDMNRNSGVIKVYARK 62
Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
+VEEV + +ISL AR+ +P + + + P DFGR+A Q+AKQV+ Q++REAE
Sbjct: 63 LIVEEVLDPRTEISLPAAREINPHFQLEDIAEIEVTPRDFGRIAAQTAKQVVTQRIREAE 122
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
R Y +F DK +I++GTV+R + N+ +DLG + V+ E + E DR+K+YI
Sbjct: 123 RGLIYNKFVDKEEDIVTGTVQRQDPRNIYIDLGKVEAVLPLGELMPNEKFSHLDRIKAYI 182
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
V +GPQ++LSR+HP + +LF +EVPEI++G+V++++V+R+ G R+K+AV S ++
Sbjct: 183 TKVENTTKGPQIMLSRSHPGLLKRLFELEVPEIFDGVVEIRSVAREAGFRSKIAVHSRNA 242
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
+DPVG+CVG RG+RVQ +V ELR EKIDIV +S + +V NAL P+ V +V + E+
Sbjct: 243 EVDPVGSCVGPRGTRVQTIVNELRGEKIDIVRYSDNVDEYVANALSPSKVLEVQVFEEEK 302
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
VIVP QLSLAIG +GQN RLA++LTGW IDI +E + + + ++
Sbjct: 303 MARVIVPDYQLSLAIGIKGQNARLAAKLTGWKIDIKSETQAEEELGRPRTSTDEMHQDSV 362
Query: 367 NVD 369
+VD
Sbjct: 363 SVD 365
>gi|315648098|ref|ZP_07901199.1| NusA antitermination factor [Paenibacillus vortex V453]
gi|315276744|gb|EFU40087.1| NusA antitermination factor [Paenibacillus vortex V453]
Length = 365
Score = 359 bits (921), Expect = 7e-97, Method: Composition-based stats.
Identities = 145/363 (39%), Positives = 232/363 (63%)
Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66
++ ++ + + EK I +DV+ + ++ + + + T ++RV++N TG I +F
Sbjct: 3 MDFIEAMNELEREKGISKDVLFEAIEAALISSYKRNFNTAQNVRVDMNRNTGVIKVFARK 62
Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
+V+EV + +ISL AR+ +P I + + P DFGR+A Q+AKQV+ Q++REAE
Sbjct: 63 LIVDEVLDPRTEISLHAAREINPHFQIEDIAEIEVTPRDFGRIAAQTAKQVVTQRIREAE 122
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
R Y F DK +I++GT++R + N+ +DLG + + E + E + GDR+K+YI
Sbjct: 123 RGLIYSAFIDKEDDIVTGTLQRQDMRNIYIDLGKIEAALPLTELMPNEKFKHGDRIKAYI 182
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
V +GPQ++LSRTHP + +LF +EVPEI++G+V++++V+R+ G R+K+AV+S +
Sbjct: 183 TKVENTTKGPQIMLSRTHPGLLKRLFELEVPEIFDGVVEIRSVAREAGFRSKIAVYSRND 242
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
+DPVG+CVG +G RVQ +V ELR EKIDIV +S + +V NAL P+ V +V + ED
Sbjct: 243 EVDPVGSCVGPKGMRVQTIVNELRGEKIDIVRYSEEVEEYVANALSPSKVLEVQVFEDEK 302
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
VIVP QLSLAIG +GQN RLA++LTGW IDI +E + + ++ + ++
Sbjct: 303 MARVIVPDYQLSLAIGIKGQNARLAAKLTGWKIDIKSESQAEQEFGRPKSQSGEMHQDSV 362
Query: 367 NVD 369
+VD
Sbjct: 363 SVD 365
>gi|227551756|ref|ZP_03981805.1| transcription termination factor NusA [Enterococcus faecium TX1330]
gi|257895648|ref|ZP_05675301.1| transcription termination factor NusA [Enterococcus faecium Com12]
gi|293377741|ref|ZP_06623930.1| transcription termination factor NusA [Enterococcus faecium PC4.1]
gi|227179061|gb|EEI60033.1| transcription termination factor NusA [Enterococcus faecium TX1330]
gi|257832213|gb|EEV58634.1| transcription termination factor NusA [Enterococcus faecium Com12]
gi|292643741|gb|EFF61862.1| transcription termination factor NusA [Enterococcus faecium PC4.1]
Length = 391
Score = 359 bits (921), Expect = 7e-97, Method: Composition-based stats.
Identities = 152/391 (38%), Positives = 231/391 (59%), Gaps = 9/391 (2%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L DA+ EK I +++V+ + ++ A + YG ++ VE + + G I ++ + E
Sbjct: 4 EMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQKKGKIHVYAVKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
V EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREAER
Sbjct: 64 VTEEVMDSQLEVSLKDALLINPAYEIGDTIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y+
Sbjct: 124 TIIYNEFSAYEKDIMQGIVERQDKRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVYVS 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +GPQV +SR+HP + +LF EVPE+Y+GIV++ +++R+ G R+K+AV S+D +
Sbjct: 184 RVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGIVEIVSIAREAGDRSKVAVRSNDQN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV-G 306
ID VG CVG +G RVQA+V EL+ E +DIV W+ D A F+ NAL PA V V+ DE
Sbjct: 244 IDAVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAVFIANALNPAQVMDVIFDETNPK 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
V+VP QLSLAIG+RGQN RLA++LT IDI +E + + E +
Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTNHKIDIKSESDMA--------EFYEKQEHQN 355
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIAS 397
+E+ +V D E A +E
Sbjct: 356 ETEELHDEAIVQSDLTDDEYEAIAFNNETVE 386
>gi|312898335|ref|ZP_07757725.1| transcription termination factor NusA [Megasphaera micronuciformis
F0359]
gi|310620254|gb|EFQ03824.1| transcription termination factor NusA [Megasphaera micronuciformis
F0359]
Length = 375
Score = 359 bits (921), Expect = 7e-97, Method: Composition-based stats.
Identities = 148/346 (42%), Positives = 217/346 (62%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
ELL + ++ EK + DV+ + + A + Y + V ++ TGD S+
Sbjct: 2 NKELLSAIEYLSKEKGVTADVICDSLEAVLITAYKKEYDGNPNATVRLDRLTGDYSIVSP 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV EV + +ISL+ AR D + G + + P +FGR+A Q+AKQV+IQ++REA
Sbjct: 62 KTVVAEVADEENEISLEDARAIDKGYEEGDEILVDVTPKNFGRIAAQAAKQVMIQRLREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER+ Y EF + +II+G ++R+E NV +DLG ++ V+ E I E G R+K Y
Sbjct: 122 ERNIVYDEFYGRTDDIITGIIQRIEQKNVYIDLGKAEAVLPYSEQIPTEEYTVGQRIKCY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ +VR +G Q+ LSRTHP + +LF +EVPEIY+G+V++ +V+R+PG R+K+AV+S D
Sbjct: 182 VVEVRNSPKGAQIQLSRTHPGLLKRLFELEVPEIYDGVVELHSVAREPGKRSKIAVYSRD 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
++D VGACVG +G+RVQ +V EL++EKIDIV W D A ++ NAL PA V V +DE
Sbjct: 242 PNVDCVGACVGPKGARVQNIVMELQNEKIDIVKWDEDPAVYIANALSPAQVVSVTIDEGA 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351
V+VP QLSLAIG+ GQN RLA++LT W IDI +E +
Sbjct: 302 KSSVVVVPDYQLSLAIGKAGQNARLAAKLTNWKIDIKSESQAEDGD 347
>gi|228992544|ref|ZP_04152471.1| Transcription elongation protein nusA [Bacillus pseudomycoides DSM
12442]
gi|228998592|ref|ZP_04158179.1| Transcription elongation protein nusA [Bacillus mycoides Rock3-17]
gi|229006092|ref|ZP_04163780.1| Transcription elongation protein nusA [Bacillus mycoides Rock1-4]
gi|228755168|gb|EEM04525.1| Transcription elongation protein nusA [Bacillus mycoides Rock1-4]
gi|228761060|gb|EEM10019.1| Transcription elongation protein nusA [Bacillus mycoides Rock3-17]
gi|228767178|gb|EEM15814.1| Transcription elongation protein nusA [Bacillus pseudomycoides DSM
12442]
Length = 366
Score = 359 bits (921), Expect = 7e-97, Method: Composition-based stats.
Identities = 142/342 (41%), Positives = 220/342 (64%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + EK I +D+++ + ++ A + + ++RV NPE G I + +
Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKD 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I
Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++++V+R+ G R+K++V++ +
Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEIEVPEIYDGTVEIRSVAREAGDRSKISVYAENID 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V KV+++E+
Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIDIVRWSNDPIEYVANALSPSQVVKVLVNEEEKA 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
V+VP QLSLAIG+RGQN RLA++LTGW IDI +E +
Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQ 345
>gi|219669697|ref|YP_002460132.1| NusA antitermination factor [Desulfitobacterium hafniense DCB-2]
gi|219539957|gb|ACL21696.1| NusA antitermination factor [Desulfitobacterium hafniense DCB-2]
Length = 493
Score = 359 bits (921), Expect = 8e-97, Method: Composition-based stats.
Identities = 156/431 (36%), Positives = 252/431 (58%), Gaps = 1/431 (0%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+E ++ + ++ I D++ + ++ A + + ++ ++RV I+ TG+ +F
Sbjct: 2 NMEFIEALHELEKDRGISADILFEAIEAALISAYKKNFASLQNVRVHIDRMTGEFKVFAR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVEEVE+ Q+S++ A+ DP+ I VV + P +FGR+A Q+AKQV++Q++REA
Sbjct: 62 KNVVEEVEDSRTQVSMEEAQKIDPNYAIDDVVEYEVTPREFGRIAAQTAKQVVVQRIREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y E+ ++ G+I++G V+R + NVIVDLG + ++ E I E +P +R+K++
Sbjct: 122 ERGMIYDEYINREGDIVTGIVQRYDQKNVIVDLGKVEAILTAQEQIPGETYQPFERIKTF 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ +V++ +GPQV+LSRTHP + +LF +EVPEI++G+V++K VSR+ G+R+K+AV+S D
Sbjct: 182 VVEVKKTTKGPQVMLSRTHPGLIKRLFELEVPEIHDGLVEIKGVSREAGARSKIAVYSRD 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+++DPVGACVG +GSRVQ +VTEL+ EKIDIV +S D FV NAL PA V V +
Sbjct: 242 ANVDPVGACVGPKGSRVQTIVTELKGEKIDIVNYSTDPEEFVANALSPAKVVGVYPKPNE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
V+VP QLSLAIG+ GQN RLA++LT W IDI +E + Q +
Sbjct: 302 KVALVVVPDYQLSLAIGKEGQNARLAAKLTNWKIDIKSESQALAQNLIPDKNEVQGEYEE 361
Query: 366 INVDEIIAHLLVAEGFADVEEL-ACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+ A + + D E + + + E E+ + E D
Sbjct: 362 YDEFADYAEYENYDEYEDYSEYDDYEENEDYDENATYGENYDDELVYDENDQYEEFDAYQ 421
Query: 425 QKKIRELGVSE 435
+++ +
Sbjct: 422 NEELPYEESED 432
>gi|89895266|ref|YP_518753.1| hypothetical protein DSY2520 [Desulfitobacterium hafniense Y51]
gi|89334714|dbj|BAE84309.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 493
Score = 358 bits (920), Expect = 9e-97, Method: Composition-based stats.
Identities = 158/431 (36%), Positives = 252/431 (58%), Gaps = 1/431 (0%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+E ++ + ++ I D++ + ++ A + + ++ ++RV I+ TG+ +F
Sbjct: 2 NMEFIEALHELEKDRGISADILFEAIEAALISAYKKNFASLQNVRVHIDRMTGEFKVFAR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVEEVE+ Q+S++ AR DP+ I VV + P +FGR+A Q+AKQV++Q++REA
Sbjct: 62 KNVVEEVEDARTQVSMEEARKIDPNYAIDDVVEYEVTPREFGRIAAQTAKQVVVQRIREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y E+ ++ G+I++G V+R + NVIVDLG + ++ E I E +P +R+K++
Sbjct: 122 ERGMIYDEYINREGDIVTGIVQRYDQKNVIVDLGKVEAILTAQEQIPGETYQPFERIKTF 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ +V++ +GPQV+LSRTHP + +LF +EVPEI++G+V++K VSR+ G+R+K+AV+S D
Sbjct: 182 VVEVKKTTKGPQVMLSRTHPGLIKRLFELEVPEIHDGLVEIKGVSREAGARSKIAVYSRD 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
S++DPVGACVG +GSRVQ +VTEL+ EKIDIV +S D FV NAL PA V V +
Sbjct: 242 SNVDPVGACVGPKGSRVQTIVTELKGEKIDIVNYSTDPEEFVANALSPAKVVGVYPKPNE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
V+VP QLSLAIG+ GQN RLA++LT W IDI +E + Q +
Sbjct: 302 KVALVVVPDYQLSLAIGKEGQNARLAAKLTNWKIDIKSESQALAQNLIPDKNEVQGEYEE 361
Query: 366 INVDEIIAHLLVAEGFADVEEL-ACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+ A + + D E + + + E E+ + E D
Sbjct: 362 YDEFADYAEYENYDEYEDYSEYDDYEENEDYDENATYGENYDDELVYDENDQYEEFDAYQ 421
Query: 425 QKKIRELGVSE 435
+++ +
Sbjct: 422 NEELPYEESED 432
>gi|332799221|ref|YP_004460720.1| NusA antitermination factor [Tepidanaerobacter sp. Re1]
gi|332696956|gb|AEE91413.1| NusA antitermination factor [Tepidanaerobacter sp. Re1]
Length = 357
Score = 358 bits (920), Expect = 1e-96, Method: Composition-based stats.
Identities = 146/342 (42%), Positives = 230/342 (67%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+E ++ + EK I +D++L + S+ A + YG+ ++ V I+ +TG++ +F
Sbjct: 2 NIEFIEALAQIEKEKGISKDILLDALEASLISAYKKNYGSSQNVSVSIDRDTGEVKVFSK 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
V +EV++ +I + A +P+ IG V+S + P FGR+A Q+AKQV++Q++REA
Sbjct: 62 KVVTDEVKDTLLEIDINEAYTFNPTAKIGDVISIEVTPKKFGRIAAQTAKQVVMQRIREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ERD + E+ + +I++G V+R + NVI+DLG ++ ++ E IS E G+R+K Y
Sbjct: 122 ERDLIFEEYSGRETDIVTGIVQRFDKKNVIIDLGKTEAILPTGEQISSEEYVQGNRIKVY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I +V++ +GPQ+ +SR+HP + +LF +EVPEIY GIV++K ++R+ GSR K+AV+S +
Sbjct: 182 ILEVKKTTKGPQITVSRSHPGLVKRLFELEVPEIYEGIVEIKGIAREAGSRTKIAVYSKN 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+IDPVGACVG +GSRVQ++V EL EKIDI+ W D A F+ NAL PA V V+++E+
Sbjct: 242 ENIDPVGACVGPKGSRVQSIVDELNGEKIDIIKWDKDVAEFISNALSPAKVLNVIVEENT 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347
V V + QLSLAIG+ GQN RLA++LTGW IDI +++ +
Sbjct: 302 KTARVTVSESQLSLAIGKEGQNARLAARLTGWKIDIKSKDGN 343
>gi|291523276|emb|CBK81569.1| transcription termination factor NusA [Coprococcus catus GD/7]
Length = 348
Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats.
Identities = 151/339 (44%), Positives = 226/339 (66%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
EL++ D + EK I +D++L + +S+ A ++ YG +IRV +N ETG++ +F
Sbjct: 6 ELIKALDDIEKEKGISKDILLEAIENSLVAACKNEYGKADNIRVTMNRETGEVKVFADKT 65
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEVE+ +IS+ AR ++ D G +V + P +FGR+A Q AKQV++QK+RE ER
Sbjct: 66 VVEEVEDPEMEISVADARLKNKFYDPGDIVHVEIVPKNFGRIAAQKAKQVVVQKIREEER 125
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y E+ + +I++G V+R N+ V+LG D V+ +E + E +P DR+K YI
Sbjct: 126 KSLYNEYYGREKDIVTGVVQRYNGKNISVNLGKVDAVLTENEQVKGEVFKPTDRIKLYIV 185
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
+V+ +GP+V +SRTHP+ + +LF EV E+ +G V++K+++R+ GSR K+AV S++ +
Sbjct: 186 EVKNTTKGPKVTVSRTHPELVKRLFEAEVTEVRDGTVEIKSIAREAGSRTKIAVSSNNPN 245
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVGACVGM G+RV A+V ELR EKIDI+ WS D A + NAL PA V V +D +
Sbjct: 246 VDPVGACVGMNGARVNAIVDELRGEKIDIINWSEDPAVLIENALSPAKVVSVDVDPEEKS 305
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346
V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E +
Sbjct: 306 AAVVVPDYQLSLAIGKEGQNARLAAKLTGYKIDIKSESQ 344
>gi|293570613|ref|ZP_06681664.1| transcription termination factor NusA [Enterococcus faecium E980]
gi|291609284|gb|EFF38555.1| transcription termination factor NusA [Enterococcus faecium E980]
Length = 391
Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats.
Identities = 153/402 (38%), Positives = 233/402 (57%), Gaps = 19/402 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L DA+ EK I +++V+ + ++ A + YG ++ VE + + G I ++ + E
Sbjct: 4 EMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQKKGKIHVYAVKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
V EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREAER
Sbjct: 64 VTEEVMDSQLEVSLKDALLINPAYEIGDTIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y+
Sbjct: 124 TIIYNEFSAYEKDIMQGIVERQDKRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVYVS 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +GPQV +SR+HP + +LF EVPE+Y+GIV++ +++R+ G R+K+AV S+D +
Sbjct: 184 RVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGIVEIVSIAREAGDRSKVAVRSNDQN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV-G 306
ID VG CVG +G RVQA+V EL+ E +DIV W+ D A F+ NAL PA V V+ DE
Sbjct: 244 IDAVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAVFIANALNPAQVMDVIFDETNPK 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
V+VP QLSLAIG+RGQN RLA++LT IDI +E + + E + Q
Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTNHKIDIKSESDMA--------EFYEKQEQQN 355
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408
+E+ +V + F+ ET E
Sbjct: 356 ETEELHDEAIVQSDLT----------DDEYETIAFNNETVEE 387
>gi|257887083|ref|ZP_05666736.1| transcription termination factor NusA [Enterococcus faecium
1,141,733]
gi|257823137|gb|EEV50069.1| transcription termination factor NusA [Enterococcus faecium
1,141,733]
Length = 391
Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats.
Identities = 153/391 (39%), Positives = 232/391 (59%), Gaps = 9/391 (2%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L DA+ EK I +++V+ + ++ A + YG ++ VE + + G I ++ + E
Sbjct: 4 EMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQKKGKIHVYAVKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
V EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREAER
Sbjct: 64 VTEEVMDSQLEVSLKDALLINPAYEIGDTIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y+
Sbjct: 124 TIIYNEFSAYEKDIMQGIVERQDKRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVYVS 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +GPQV +SR+HP + +LF EVPE+Y+GIV++ +++R+ G R+K+AV S+D +
Sbjct: 184 RVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGIVEIVSIAREAGDRSKVAVRSNDQN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV-G 306
ID VG CVG +G RVQA+V EL+ E +DIV W+ D A F+ NAL PA V V+ DE
Sbjct: 244 IDAVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAVFIANALNPAQVMDVIFDETNPK 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
V+VP QLSLAIG+RGQN RLA++LT IDI +E + + E + Q
Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTNHKIDIKSESDMA--------EFYEKQEQQN 355
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIAS 397
+E+ +V D E A +E
Sbjct: 356 ETEELHDEAIVQSDLTDDEYEAIAFNNETVE 386
>gi|320354998|ref|YP_004196337.1| NusA antitermination factor [Desulfobulbus propionicus DSM 2032]
gi|320123500|gb|ADW19046.1| NusA antitermination factor [Desulfobulbus propionicus DSM 2032]
Length = 451
Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats.
Identities = 179/452 (39%), Positives = 281/452 (62%), Gaps = 16/452 (3%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
MV A L +I D + +K IDR +++ + ++++ A R YGT +I V+ N + G++
Sbjct: 1 MVGAEN--LKRIVDQICRDKGIDRALLIDAIEEAVRSAVRKKYGTRREIEVQFNEDLGEV 58
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM-DFGRVAVQSAKQVII 119
+F+ VV+EV + +ISL+ AR DP I++ + + + + D GR+A QSAKQVII
Sbjct: 59 EVFQYRTVVDEVYDEETEISLEEARRLDPEIELDDDLGEKMDNIADLGRIAAQSAKQVII 118
Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG 179
++R+AERD Y F+D+ G I++G V+R E G++I++LG +D V+ R+ I + + + G
Sbjct: 119 HRMRDAERDVIYEMFRDREGTIVNGIVQRFERGDMIINLGRTDAVLPREGQIPKRSYKQG 178
Query: 180 DRVKSYIYDVRREQR-----GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234
DR+++Y+ +VRR+ R Q++LSRT +F++KLF MEVPEI GIV++ SR+PG
Sbjct: 179 DRIRAYLQEVRRDTREGKFRDSQLILSRTCNEFLIKLFEMEVPEIAEGIVKIMGASREPG 238
Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294
RAK+AV S +S +DPVGACVG++GSRVQ VV EL+ E+IDIV WSPD A +V NAL PA
Sbjct: 239 FRAKIAVSSIESDVDPVGACVGLKGSRVQNVVQELQGERIDIVPWSPDPARYVCNALAPA 298
Query: 295 IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354
V+ V+++++ + V+VP +QLSLAIGR+GQNVRLAS+L GW ID+ ++ + +
Sbjct: 299 EVSMVIVEDERKALLVVVPDDQLSLAIGRQGQNVRLASRLLGWKIDVKSQSRYANMDNTE 358
Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414
+ VDE +A L A G LA + I ++ ++ D++ A +Q A
Sbjct: 359 YRSLLAVD----GVDENLADRLFAAGITSAPLLAAMDIEQLMALARIDQDKAQGMQKAAA 414
Query: 415 EYLEGIDITLQKKIRELGVSEELCSIPGIDSK 446
+ + +K + +EL + +
Sbjct: 415 A----MQPSKEKTAQPAPDVQELTDQEPVTPQ 442
>gi|258591348|emb|CBE67647.1| Transcription elongation protein nusA (N utilization substance
protein A) (L factor) [NC10 bacterium 'Dutch sediment']
Length = 433
Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats.
Identities = 172/431 (39%), Positives = 258/431 (59%), Gaps = 14/431 (3%)
Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66
++LLQ+ + V EK ID V++ ++ +I A+R G D+RVE + + L+ +
Sbjct: 3 IDLLQVIEQVGREKEIDSAVLIEAVSAAILSASRKTLGAALDLRVEFDQRSRCFMLYAVR 62
Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
+VVE+V N +I++ A+ +P +G L +FGR+A Q+AKQVIIQ+V+EAE
Sbjct: 63 KVVEQVVNPHVEIAIDEAQQLNPEAQLGDETKTELKAKEFGRIAAQTAKQVIIQRVKEAE 122
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
R+ + FK +VGE++ G V+RV GNVIV+LG ++ ++ E + RE+ R GDR+++Y+
Sbjct: 123 RESVFQAFKARVGELVGGVVQRVAKGNVIVNLGKAEAILPPREQLPREDYRVGDRIRAYV 182
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
DV++ RG Q++LSRTHP + KL +EVPEIY GIV++KAVSRD G RAK+AV S DS
Sbjct: 183 LDVKKLPRGSQIVLSRTHPGLLAKLLEIEVPEIYEGIVEIKAVSRDAGERAKVAVASRDS 242
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
++DPVGACVG RGSR+QA+V EL EKID++ W D A+FV +AL PA + V + ++
Sbjct: 243 NVDPVGACVGYRGSRIQAIVRELMGEKIDVIAWKDDPASFVKSALAPADIESVEVVQETH 302
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+ V+V QLSLAIG+RGQN RLA++L GW +D+ E ++ + +
Sbjct: 303 TLHVLVADGQLSLAIGKRGQNARLAAKLLGWKVDVRGRGEIQKASEERLQPEFEPVASTV 362
Query: 367 --------------NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412
V E +A L+ G +LA + +EG +TA ++
Sbjct: 363 EGRAGTDLRLAEVPGVGEKLADRLIEAGVDSCRKLADASDEALVQVEGIGPKTAQKLIEA 422
Query: 413 AREYLEGIDIT 423
A+ L D
Sbjct: 423 AKAALALRDAE 433
>gi|256618850|ref|ZP_05475696.1| transcription termination factor NusA [Enterococcus faecalis ATCC
4200]
gi|256598377|gb|EEU17553.1| transcription termination factor NusA [Enterococcus faecalis ATCC
4200]
Length = 399
Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats.
Identities = 149/377 (39%), Positives = 229/377 (60%), Gaps = 7/377 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L D + EK I +D V+ + ++ A + YG S++ VE P+ G+I ++ + E
Sbjct: 4 EMLNALDVLEAEKGIPKDTVIEALQAALVSAYKRHYGQASNVEVEFEPKKGNIHVYAVKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
V EEV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+VREAER
Sbjct: 64 VTEEVFDSQLEVSLKDAVALNGAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y+
Sbjct: 124 TIIYNEFSKYENDIMQGIVERQDRRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVYVS 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +GPQV +SR+HP + +LF E+PE+Y+GIV++ +V+R+ G R+K+AV S+D +
Sbjct: 184 RVENTSKGPQVFVSRSHPDLLKRLFEQEIPEVYDGIVEIVSVAREAGDRSKVAVRSTDPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV-G 306
IDPVG CVG +G RVQA+V EL+ E +DIV W+ D A ++ NAL PA V V+ D +
Sbjct: 244 IDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAIYISNALNPAQVLDVIFDPENSK 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
V+VP QLSLAIG+RGQN RLA++LTG IDI +E + + ++ Q +
Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTGHKIDIKSESDMAEFYEQ------QANQEVA 357
Query: 367 NVDEIIAHLLVAEGFAD 383
V E + ++
Sbjct: 358 EVAEEMDEAIIHSDMTA 374
>gi|255976057|ref|ZP_05426643.1| transcription termination factor NusA [Enterococcus faecalis T2]
gi|307279086|ref|ZP_07560144.1| transcription termination factor NusA [Enterococcus faecalis
TX0860]
gi|255968929|gb|EET99551.1| transcription termination factor NusA [Enterococcus faecalis T2]
gi|306504211|gb|EFM73423.1| transcription termination factor NusA [Enterococcus faecalis
TX0860]
Length = 399
Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats.
Identities = 151/397 (38%), Positives = 235/397 (59%), Gaps = 7/397 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L D + EK I +D V+ + ++ A + YG S++ VE P+ G+I ++ + E
Sbjct: 4 EMLNALDVLEAEKGIPKDTVIEALQAALVSAYKRHYGQASNVEVEFEPKKGNIHVYAVKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
V EEV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+VREAER
Sbjct: 64 VTEEVFDSQLEVSLKDAVALNGAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF + +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y+
Sbjct: 124 TIIYNEFSEYENDIMQGIVERQDRRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVYVS 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +GPQV +SR+HP + +LF E+PE+Y+GIV++ +V+R+ G R+K+AV S+D +
Sbjct: 184 RVENTSKGPQVFVSRSHPDLLKRLFEQEIPEVYDGIVEIVSVAREAGDRSKVAVRSTDPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV-G 306
IDPVG CVG +G RVQA+V EL+ E +DIV W+ D A ++ NAL PA V V+ D +
Sbjct: 244 IDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAIYISNALNPAQVLDVIFDPENSK 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
V+VP QLSLAIG+RGQN RLA++LTG IDI +E + + ++ Q +
Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTGHKIDIKSESDMAEFYEQ------QANQEVA 357
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403
V E + ++ + + E +E
Sbjct: 358 EVAEEMDEAIIHSDMTADDYENLATEEAVVEAEITEE 394
>gi|313896800|ref|ZP_07830348.1| transcription termination factor NusA [Selenomonas sp. oral taxon
137 str. F0430]
gi|312974717|gb|EFR40184.1| transcription termination factor NusA [Selenomonas sp. oral taxon
137 str. F0430]
Length = 379
Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats.
Identities = 153/354 (43%), Positives = 226/354 (63%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E LQ +AYEK ID +++ + ++ A R +G+ ++R+ ++ ETG +F +
Sbjct: 14 EFLQTLKELAYEKGIDEELLFETIEAALISAYRRNFGSAQNVRIALSRETGAFHVFAIKT 73
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEE E+ ISL A +P +G VV + P +FGR+A Q+AKQV++Q++REAER
Sbjct: 74 VVEEAESGVTDISLAQAHAINPDYQVGDVVEIEMTPANFGRIAAQTAKQVVMQRLREAER 133
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y + ++ +I++G V+R+E +V VD+G ++ V+ E I E GD +++YI
Sbjct: 134 GIVYEAYMNRSADIVTGIVQRIEGRSVYVDIGKAEAVLMPTEQIPGETYNYGDTIRAYII 193
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
+V+R RGPQ++LSRTHP + KLF ++VPE+ GIV++KA++R+ GSR+K+AV S++
Sbjct: 194 EVKRSPRGPQIMLSRTHPGLLKKLFELQVPEMQEGIVEIKAIAREAGSRSKVAVHSTEER 253
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DP+GACVG RVQAVV EL EKIDIV WS D AT++ N+L PA V V + E
Sbjct: 254 VDPIGACVGPHFMRVQAVVDELAGEKIDIVKWSEDPATYIANSLNPAKVISVAVSETEKL 313
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + + E
Sbjct: 314 SRVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQAAQEENGGVPEPVDD 367
>gi|257085469|ref|ZP_05579830.1| transcription termination factor NusA [Enterococcus faecalis Fly1]
gi|256993499|gb|EEU80801.1| transcription termination factor NusA [Enterococcus faecalis Fly1]
Length = 403
Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats.
Identities = 148/369 (40%), Positives = 231/369 (62%), Gaps = 1/369 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L D + EK I +D V+ + ++ A + YG S++ VE P+ G+I ++ + E
Sbjct: 4 EMLNALDVLEAEKGIPKDTVIEALQAALVSAYKRHYGQASNVEVEFEPKKGNIHVYAVKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
V EEV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+VREAER
Sbjct: 64 VTEEVFDSQLEVSLKDAVALNGAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF + +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y+
Sbjct: 124 TIIYNEFSEYENDIMQGIVERQDRRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVYVS 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +GPQV +SR+HP + +LF E+PE+Y+GIV++ +V+R+ G R+K+AV S+D +
Sbjct: 184 RVENTSKGPQVFVSRSHPDLLKRLFEQEIPEVYDGIVEIVSVAREAGDRSKVAVRSTDPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV-G 306
IDPVG CVG +G RVQA+V EL+ E +DIV W+ D A ++ NAL PA V V+ D +
Sbjct: 244 IDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAIYISNALNPAQVLDVIFDPENSK 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
V+VP QLSLAIG+RGQN RLA++LTG IDI +E + + ++ N+ + +
Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTGHKIDIKSESDMAEFYEQQANQEVAEVAEEM 363
Query: 367 NVDEIIAHL 375
+ I + +
Sbjct: 364 DEAIIHSDM 372
>gi|29375840|ref|NP_814994.1| transcription elongation factor NusA [Enterococcus faecalis V583]
gi|227518531|ref|ZP_03948580.1| transcription elongation factor NusA [Enterococcus faecalis TX0104]
gi|227553057|ref|ZP_03983106.1| transcription elongation factor NusA [Enterococcus faecalis HH22]
gi|229546052|ref|ZP_04434777.1| transcription elongation factor NusA [Enterococcus faecalis TX1322]
gi|229550242|ref|ZP_04438967.1| transcription elongation factor NusA [Enterococcus faecalis ATCC
29200]
gi|255973018|ref|ZP_05423604.1| transcription termination factor NusA [Enterococcus faecalis T1]
gi|256762268|ref|ZP_05502848.1| transcription termination factor NusA [Enterococcus faecalis T3]
gi|256852913|ref|ZP_05558283.1| transcription elongation factor NusA [Enterococcus faecalis T8]
gi|256958759|ref|ZP_05562930.1| transcription termination factor NusA [Enterococcus faecalis DS5]
gi|256962135|ref|ZP_05566306.1| transcription termination factor NusA [Enterococcus faecalis
Merz96]
gi|256965334|ref|ZP_05569505.1| transcription termination factor NusA [Enterococcus faecalis
HIP11704]
gi|257078788|ref|ZP_05573149.1| transcription termination factor NusA [Enterococcus faecalis JH1]
gi|257082768|ref|ZP_05577129.1| transcription termination factor NusA [Enterococcus faecalis E1Sol]
gi|257086618|ref|ZP_05580979.1| transcription termination factor NusA [Enterococcus faecalis D6]
gi|257089675|ref|ZP_05584036.1| transcriptional termination factor nusA [Enterococcus faecalis
CH188]
gi|257415889|ref|ZP_05592883.1| transcription termination factor NusA [Enterococcus faecalis
AR01/DG]
gi|257419091|ref|ZP_05596085.1| transcription termination factor nusA [Enterococcus faecalis T11]
gi|257422841|ref|ZP_05599831.1| transcription elongation factor nusA [Enterococcus faecalis X98]
gi|293383160|ref|ZP_06629077.1| transcription termination factor NusA [Enterococcus faecalis R712]
gi|293387686|ref|ZP_06632231.1| transcription termination factor NusA [Enterococcus faecalis S613]
gi|294780121|ref|ZP_06745494.1| transcription termination factor NusA [Enterococcus faecalis PC1.1]
gi|300859670|ref|ZP_07105758.1| transcription termination factor NusA [Enterococcus faecalis TUSoD
Ef11]
gi|307268540|ref|ZP_07549913.1| transcription termination factor NusA [Enterococcus faecalis
TX4248]
gi|307273441|ref|ZP_07554686.1| transcription termination factor NusA [Enterococcus faecalis
TX0855]
gi|307277604|ref|ZP_07558696.1| transcription termination factor NusA [Enterococcus faecalis
TX2134]
gi|307288429|ref|ZP_07568417.1| transcription termination factor NusA [Enterococcus faecalis
TX0109]
gi|307291252|ref|ZP_07571136.1| transcription termination factor NusA [Enterococcus faecalis
TX0411]
gi|312899340|ref|ZP_07758673.1| transcription termination factor NusA [Enterococcus faecalis
TX0470]
gi|312904021|ref|ZP_07763189.1| transcription termination factor NusA [Enterococcus faecalis
TX0635]
gi|312907251|ref|ZP_07766242.1| transcription termination factor NusA [Enterococcus faecalis DAPTO
512]
gi|312909869|ref|ZP_07768717.1| transcription termination factor NusA [Enterococcus faecalis DAPTO
516]
gi|312952268|ref|ZP_07771143.1| transcription termination factor NusA [Enterococcus faecalis
TX0102]
gi|29343302|gb|AAO81064.1| N utilization substance protein A [Enterococcus faecalis V583]
gi|227074013|gb|EEI11976.1| transcription elongation factor NusA [Enterococcus faecalis TX0104]
gi|227177800|gb|EEI58772.1| transcription elongation factor NusA [Enterococcus faecalis HH22]
gi|229304680|gb|EEN70676.1| transcription elongation factor NusA [Enterococcus faecalis ATCC
29200]
gi|229308825|gb|EEN74812.1| transcription elongation factor NusA [Enterococcus faecalis TX1322]
gi|255964036|gb|EET96512.1| transcription termination factor NusA [Enterococcus faecalis T1]
gi|256683519|gb|EEU23214.1| transcription termination factor NusA [Enterococcus faecalis T3]
gi|256711372|gb|EEU26410.1| transcription elongation factor NusA [Enterococcus faecalis T8]
gi|256949255|gb|EEU65887.1| transcription termination factor NusA [Enterococcus faecalis DS5]
gi|256952631|gb|EEU69263.1| transcription termination factor NusA [Enterococcus faecalis
Merz96]
gi|256955830|gb|EEU72462.1| transcription termination factor NusA [Enterococcus faecalis
HIP11704]
gi|256986818|gb|EEU74120.1| transcription termination factor NusA [Enterococcus faecalis JH1]
gi|256990798|gb|EEU78100.1| transcription termination factor NusA [Enterococcus faecalis E1Sol]
gi|256994648|gb|EEU81950.1| transcription termination factor NusA [Enterococcus faecalis D6]
gi|256998487|gb|EEU85007.1| transcriptional termination factor nusA [Enterococcus faecalis
CH188]
gi|257157717|gb|EEU87677.1| transcription termination factor NusA [Enterococcus faecalis
ARO1/DG]
gi|257160919|gb|EEU90879.1| transcription termination factor nusA [Enterococcus faecalis T11]
gi|257164665|gb|EEU94625.1| transcription elongation factor nusA [Enterococcus faecalis X98]
gi|291079499|gb|EFE16863.1| transcription termination factor NusA [Enterococcus faecalis R712]
gi|291082875|gb|EFE19838.1| transcription termination factor NusA [Enterococcus faecalis S613]
gi|294452796|gb|EFG21225.1| transcription termination factor NusA [Enterococcus faecalis PC1.1]
gi|295112810|emb|CBL31447.1| transcription termination factor NusA [Enterococcus sp. 7L76]
gi|300850488|gb|EFK78237.1| transcription termination factor NusA [Enterococcus faecalis TUSoD
Ef11]
gi|306497483|gb|EFM67016.1| transcription termination factor NusA [Enterococcus faecalis
TX0411]
gi|306500600|gb|EFM69929.1| transcription termination factor NusA [Enterococcus faecalis
TX0109]
gi|306505869|gb|EFM75047.1| transcription termination factor NusA [Enterococcus faecalis
TX2134]
gi|306509968|gb|EFM78993.1| transcription termination factor NusA [Enterococcus faecalis
TX0855]
gi|306515136|gb|EFM83678.1| transcription termination factor NusA [Enterococcus faecalis
TX4248]
gi|310626279|gb|EFQ09562.1| transcription termination factor NusA [Enterococcus faecalis DAPTO
512]
gi|310629652|gb|EFQ12935.1| transcription termination factor NusA [Enterococcus faecalis
TX0102]
gi|310632497|gb|EFQ15780.1| transcription termination factor NusA [Enterococcus faecalis
TX0635]
gi|311289827|gb|EFQ68383.1| transcription termination factor NusA [Enterococcus faecalis DAPTO
516]
gi|311293491|gb|EFQ72047.1| transcription termination factor NusA [Enterococcus faecalis
TX0470]
gi|315027493|gb|EFT39425.1| transcription termination factor NusA [Enterococcus faecalis
TX2137]
gi|315030928|gb|EFT42860.1| transcription termination factor NusA [Enterococcus faecalis
TX4000]
gi|315034084|gb|EFT46016.1| transcription termination factor NusA [Enterococcus faecalis
TX0017]
gi|315036752|gb|EFT48684.1| transcription termination factor NusA [Enterococcus faecalis
TX0027]
gi|315145578|gb|EFT89594.1| transcription termination factor NusA [Enterococcus faecalis
TX2141]
gi|315147751|gb|EFT91767.1| transcription termination factor NusA [Enterococcus faecalis
TX4244]
gi|315151452|gb|EFT95468.1| transcription termination factor NusA [Enterococcus faecalis
TX0012]
gi|315153231|gb|EFT97247.1| transcription termination factor NusA [Enterococcus faecalis
TX0031]
gi|315155990|gb|EFU00007.1| transcription termination factor NusA [Enterococcus faecalis
TX0043]
gi|315157838|gb|EFU01855.1| transcription termination factor NusA [Enterococcus faecalis
TX0312]
gi|315160336|gb|EFU04353.1| transcription termination factor NusA [Enterococcus faecalis
TX0645]
gi|315165485|gb|EFU09502.1| transcription termination factor NusA [Enterococcus faecalis
TX1302]
gi|315166759|gb|EFU10776.1| transcription termination factor NusA [Enterococcus faecalis
TX1341]
gi|315169950|gb|EFU13967.1| transcription termination factor NusA [Enterococcus faecalis
TX1342]
gi|315575674|gb|EFU87865.1| transcription termination factor NusA [Enterococcus faecalis
TX0309B]
gi|315578368|gb|EFU90559.1| transcription termination factor NusA [Enterococcus faecalis
TX0630]
gi|315579882|gb|EFU92073.1| transcription termination factor NusA [Enterococcus faecalis
TX0309A]
gi|323480502|gb|ADX79941.1| transcription elongation protein nusA [Enterococcus faecalis 62]
gi|327534893|gb|AEA93727.1| transcription termination factor NusA [Enterococcus faecalis OG1RF]
Length = 399
Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats.
Identities = 148/369 (40%), Positives = 231/369 (62%), Gaps = 1/369 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L D + EK I +D V+ + ++ A + YG S++ VE P+ G+I ++ + E
Sbjct: 4 EMLNALDVLEAEKGIPKDTVIEALQAALVSAYKRHYGQASNVEVEFEPKKGNIHVYAVKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
V EEV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+VREAER
Sbjct: 64 VTEEVFDSQLEVSLKDAVALNGAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF + +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y+
Sbjct: 124 TIIYNEFSEYENDIMQGIVERQDRRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVYVS 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +GPQV +SR+HP + +LF E+PE+Y+GIV++ +V+R+ G R+K+AV S+D +
Sbjct: 184 RVENTSKGPQVFVSRSHPDLLKRLFEQEIPEVYDGIVEIVSVAREAGDRSKVAVRSTDPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV-G 306
IDPVG CVG +G RVQA+V EL+ E +DIV W+ D A ++ NAL PA V V+ D +
Sbjct: 244 IDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAIYISNALNPAQVLDVIFDPENSK 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
V+VP QLSLAIG+RGQN RLA++LTG IDI +E + + ++ N+ + +
Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTGHKIDIKSESDMAEFYEQQANQEVAEVAEEM 363
Query: 367 NVDEIIAHL 375
+ I + +
Sbjct: 364 DEAIIHSDM 372
>gi|256830179|ref|YP_003158907.1| NusA antitermination factor [Desulfomicrobium baculatum DSM 4028]
gi|256579355|gb|ACU90491.1| NusA antitermination factor [Desulfomicrobium baculatum DSM 4028]
Length = 441
Score = 357 bits (917), Expect = 2e-96, Method: Composition-based stats.
Identities = 160/405 (39%), Positives = 261/405 (64%), Gaps = 5/405 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
LEL + D ++ +K IDR++++ + ++I+ + YG DI V N ETG+I +++
Sbjct: 2 NLELKKAIDQISKDKGIDREMLIDTLEEAIRASVTKKYGDKMDIEVTFNEETGEIEVYQF 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVEE+E+ +I + A DP++++ + L D GR+A QSAKQVIIQ++R+A
Sbjct: 62 KIVVEEIEDPDTEILMVDALKHDPNVELDDAIGFRLQVEDLGRIAAQSAKQVIIQRMRDA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
E++ + E+K++ GEI+SG ++R + I++LG ++ ++ +D+ I RE R GDRV+
Sbjct: 122 EQEIIFEEYKNRKGEIVSGIIQRRDRSGWIINLGRTEALLPKDKQIPRERFRQGDRVEGL 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I +VR+E RGPQ++++R+ P++M LF EVPE+ +G V + V+RDPG RAK+ V S D
Sbjct: 182 IIEVRKEGRGPQIIITRSDPEYMTALFRREVPEVADGTVNIMGVARDPGLRAKVTVLSQD 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
S++DPVGACVG+RGSR+ ++V ELR E+IDIV+WSPD AT+ NAL PA ++K+ +D++
Sbjct: 242 SNVDPVGACVGIRGSRIHSIVQELRGERIDIVLWSPDIATYAANALSPARISKIAIDDEE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
+EV+VP++QL+ AIG++GQNV+LA++L GW IDI T + +
Sbjct: 302 KSLEVVVPEDQLTPAIGKKGQNVKLAAKLLGWKIDIFTNTRFNKVHKDRHLLEQLASAAQ 361
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410
+++ + GF +E +A ++ I+G EE ++
Sbjct: 362 VSIAD-----FAEAGFDSLEAMAACTNEQLLDIQGISEENIGALR 401
>gi|292669518|ref|ZP_06602944.1| transcription termination factor NusA [Selenomonas noxia ATCC
43541]
gi|292648841|gb|EFF66813.1| transcription termination factor NusA [Selenomonas noxia ATCC
43541]
Length = 377
Score = 357 bits (917), Expect = 2e-96, Method: Composition-based stats.
Identities = 158/363 (43%), Positives = 232/363 (63%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E LQ +AYEK ID +++ + ++ A R +G+ ++R+ ++ ETG +F +
Sbjct: 14 EFLQTLKELAYEKGIDEELLFETIEAALISAYRRNFGSAQNVRIALSRETGAFHVFAIKT 73
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEE EN ISL AR +P +G V+ + P +FGR+A Q+AKQV++Q++REAER
Sbjct: 74 VVEEAENDITDISLAQARAINPDYAVGDVIEIEMTPANFGRIAAQTAKQVVMQRLREAER 133
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y E+ ++ +I++G V+RVE NV VD+G ++ V+ E + E GD +++YI
Sbjct: 134 GIVYEEYMNRSADIVTGIVQRVEGRNVFVDIGRAEAVLMATEQMPTETYNYGDTLRAYII 193
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
+V+R RGPQ++LSRTHP + KLF ++VPE+ G+V++K+++R+ GSR+K+AV SS+
Sbjct: 194 EVKRTSRGPQIMLSRTHPGLLKKLFELQVPEMQEGVVEIKSIAREAGSRSKIAVASSEER 253
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DP+GACVG RVQAVV EL EKIDIV WS D AT++ N+L PA V V ++E
Sbjct: 254 VDPIGACVGPHYMRVQAVVDELAGEKIDIVKWSEDPATYIANSLNPAKVISVAVNEAEKV 313
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
VIVP QLSLAIG+ GQN RLA++LTGW IDI +E + E A+
Sbjct: 314 SRVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQAQELESGSEEEADMPVAPALT 373
Query: 368 VDE 370
+E
Sbjct: 374 AEE 376
>gi|320530108|ref|ZP_08031178.1| transcription termination factor NusA [Selenomonas artemidis F0399]
gi|320137541|gb|EFW29453.1| transcription termination factor NusA [Selenomonas artemidis F0399]
Length = 379
Score = 357 bits (917), Expect = 2e-96, Method: Composition-based stats.
Identities = 154/354 (43%), Positives = 226/354 (63%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E LQ +AYEK ID +++ + ++ A R +G+ ++R+ ++ ETG +F +
Sbjct: 14 EFLQTLKELAYEKGIDEELLFETIEAALISAYRRNFGSAQNVRIALSRETGAFHVFAIKT 73
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEE E+ ISL A +P +G VV + P +FGR+A Q+AKQV++Q++REAER
Sbjct: 74 VVEEAESGVTDISLAQAHAINPDYQVGDVVEIEMTPANFGRIAAQTAKQVVMQRLREAER 133
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y + ++ +I++G V+R+E +V VD+G ++ V+ E I E GD +++YI
Sbjct: 134 GIVYEAYMNRSADIVTGIVQRIEGRSVYVDIGKAEAVLMPTEQIPGETYNYGDTIRAYII 193
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
+V+R RGPQ++LSRTHP + KLF ++VPEI GIV++KA++R+ GSR+K+AV S++
Sbjct: 194 EVKRSPRGPQIMLSRTHPGLLKKLFELQVPEIQEGIVEIKAIAREAGSRSKVAVHSTEER 253
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DP+GACVG RVQAVV EL EKIDIV WS D AT++ N+L PA V V + E
Sbjct: 254 VDPIGACVGPHFMRVQAVVDELAGEKIDIVKWSEDPATYIANSLNPAKVISVAVSETEKL 313
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + + E
Sbjct: 314 SRVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQAAQEENGGVPEPVDD 367
>gi|315174358|gb|EFU18375.1| transcription termination factor NusA [Enterococcus faecalis
TX1346]
Length = 399
Score = 357 bits (916), Expect = 3e-96, Method: Composition-based stats.
Identities = 147/369 (39%), Positives = 231/369 (62%), Gaps = 1/369 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + + EK I +D V+ + ++ A + YG S++ VE P+ G+I ++ + E
Sbjct: 4 EMLNALEVLEAEKGIPKDTVIEALQAALVSAYKRHYGQASNVEVEFEPKKGNIHVYAVKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
V EEV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+VREAER
Sbjct: 64 VTEEVFDSQLEVSLKDAVALNGAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF + +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y+
Sbjct: 124 TIIYNEFSEYENDIMQGIVERQDRRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVYVS 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +GPQV +SR+HP + +LF E+PE+Y+GIV++ +V+R+ G R+K+AV S+D +
Sbjct: 184 RVENTSKGPQVFVSRSHPDLLKRLFEQEIPEVYDGIVEIVSVAREAGDRSKVAVRSTDPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV-G 306
IDPVG CVG +G RVQA+V EL+ E +DIV W+ D A ++ NAL PA V V+ D +
Sbjct: 244 IDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAIYISNALNPAQVLDVIFDPENSK 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
V+VP QLSLAIG+RGQN RLA++LTG IDI +E + + ++ N+ + +
Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTGHKIDIKSESDMAEFYEQQANQEVAEVAEEM 363
Query: 367 NVDEIIAHL 375
+ I + +
Sbjct: 364 DEAIIHSDM 372
>gi|297584078|ref|YP_003699858.1| NusA antitermination factor [Bacillus selenitireducens MLS10]
gi|297142535|gb|ADH99292.1| NusA antitermination factor [Bacillus selenitireducens MLS10]
Length = 396
Score = 357 bits (916), Expect = 3e-96, Method: Composition-based stats.
Identities = 149/373 (39%), Positives = 233/373 (62%), Gaps = 1/373 (0%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E + ++ +K ID++++L + ++ + + + ++RV+I+ E+G I +F
Sbjct: 2 NSEFMDALASIEKDKGIDKEIILEAIEQALITGYKRNFNSAQNVRVDIDRESGQIRVFAR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVEEV + +IS + A+ +P ++ +V + P DFGR+A Q+AKQV+ Q+VREA
Sbjct: 62 KTVVEEVFDARLEISQEEAKGINPHYEVDDIVEIEVTPRDFGRIAAQTAKQVVTQRVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y +F D+ +I++G V+R ++ + VDLG + ++ +E + E R DR+K++
Sbjct: 122 ERGIIYSDFIDREEDIMTGIVQRQDHRFIYVDLGKVEALMPLNEQMPNETYRHNDRIKAF 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I V + +GPQ+++SR+HP + +LF +EVPEIY+G V+VK+VSR+ G R+K++V + D
Sbjct: 182 ITKVEKTTKGPQIMISRSHPGLLKRLFELEVPEIYDGTVEVKSVSREAGERSKISVHAED 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
IDPVG+CVG RG RVQ +V EL+ EKIDIV WS D +V NAL P+ V V+++E+
Sbjct: 242 EDIDPVGSCVGQRGQRVQTIVDELKGEKIDIVRWSEDPKVYVSNALSPSKVVDVLVNEEQ 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
VIVP QLSLAIG+RGQN RLA++LTGW IDI +E E + + + F
Sbjct: 302 KMTTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESEAEESGIYPVADNDEPF-DD 360
Query: 366 INVDEIIAHLLVA 378
DE +
Sbjct: 361 EETDEDLPQSFAE 373
>gi|326803576|ref|YP_004321394.1| transcription termination factor NusA [Aerococcus urinae
ACS-120-V-Col10a]
gi|326651243|gb|AEA01426.1| transcription termination factor NusA [Aerococcus urinae
ACS-120-V-Col10a]
Length = 455
Score = 357 bits (916), Expect = 3e-96, Method: Composition-based stats.
Identities = 152/437 (34%), Positives = 247/437 (56%), Gaps = 2/437 (0%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
L+Q + + EK I +D ++ + ++ A + + ++ V + + G ++ + EV
Sbjct: 5 LIQAFEMLEQEKGISKDTIIDAVQSALVFAYKRNFDQAQNVEVVFDDKKGSFHVYSVKEV 64
Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
VE V + ++SL+ A + + +IG + + P DFGR+A Q+AKQVI Q++REAER+
Sbjct: 65 VETVMDSNLEVSLEDALEINRGYEIGDKIRCEVTPEDFGRIAAQTAKQVITQRLREAERE 124
Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
Y EF D ++++GTV+R + + V+LG + V+ + I E +P DR++ Y+
Sbjct: 125 IIYEEFIDYEDDLLTGTVERQDRRYIYVNLGKIEAVLTPEGQIPGEYFQPHDRIQVYVER 184
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V +GPQ+ +SRTHP + +LF EVPEIY+G V++++++R+ G R+KLAV+S+D ++
Sbjct: 185 VENTTKGPQIYVSRTHPNMLKRLFEQEVPEIYDGTVEIRSIAREAGDRSKLAVYSNDPNV 244
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308
DPVG CVG RGSRVQ VV EL+ E +DI+ W D A + NAL PA V V +
Sbjct: 245 DPVGTCVGPRGSRVQTVVNELKGENMDIIEWDEDPAVLIANALNPADVLAVHFVPNEQAC 304
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368
V+VP LSLAIG+RGQN RLA++LTG+ IDI +E E + + + T Q +
Sbjct: 305 VVVVPDNHLSLAIGKRGQNARLAAKLTGYKIDIKSETEYEDYQDSEEYKETFLQDQNLEA 364
Query: 369 DEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKI 428
+ L+ + +VEE + +AS EET + + + G + ++ I
Sbjct: 365 ESEEVESLLND--VNVEEELMSDPAALASDSLVSEETDPLLSEVSADDQAGFENYDEENI 422
Query: 429 RELGVSEELCSIPGIDS 445
+ E + + D
Sbjct: 423 HPDDMEEIVSDVEESDE 439
>gi|328957408|ref|YP_004374794.1| transcription elongation factor NusA [Carnobacterium sp. 17-4]
gi|328673732|gb|AEB29778.1| transcription elongation factor NusA [Carnobacterium sp. 17-4]
Length = 425
Score = 356 bits (915), Expect = 4e-96, Method: Composition-based stats.
Identities = 148/396 (37%), Positives = 233/396 (58%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L +A+ EK I ++ V+ + ++ A + Y ++ VE + + G+I ++ + E
Sbjct: 4 EMLNALEALEQEKGISKEFVIEALEVALVSAYKRNYDQAQNVEVEFDLKKGNIHVYSVKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+ V + ++ ++ A + + + ++G + + P DFGR+A Q+AKQVI+Q+VREAER
Sbjct: 64 VVDVVYDSRLEVGIEEALEINKAYELGDKIRFEVTPKDFGRIAAQTAKQVIMQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y EF +I+ G V+R ++ + V+LG + V+ + E I E +P DR+K Y+
Sbjct: 124 NIIYNEFIAYENDIMQGIVERQDHRYIYVNLGKIEAVLSKQEQIPNEVYKPHDRIKVYVT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +GPQ+ +SR+HP + +LF EVPEIY+G+V++ +++R+ G RAK+AV S +
Sbjct: 184 KVENTSKGPQIFVSRSHPDLLKRLFEQEVPEIYDGVVEIVSIAREAGDRAKVAVRSREEH 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
IDPVG CVG +G RVQA+V EL+ E +DIV W D AT++ NAL PA V V +E G
Sbjct: 244 IDPVGTCVGPKGQRVQAIVNELKGENMDIVEWDADPATYIGNALNPAQVVSVTFNESNGS 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
V+VP QLSLAIG+RGQN RLA++LTG+ IDI +E + + +
Sbjct: 304 CLVVVPDYQLSLAIGKRGQNARLAAKLTGYKIDIKSETDMEAINLAKEETGLEKDAKYAE 363
Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403
V E I + ++ E SE I D+
Sbjct: 364 VIETIENQEQEMNEEEIIESVEDLDSEFDEITIADD 399
>gi|223936317|ref|ZP_03628229.1| NusA antitermination factor [bacterium Ellin514]
gi|223894835|gb|EEF61284.1| NusA antitermination factor [bacterium Ellin514]
Length = 425
Score = 356 bits (913), Expect = 6e-96, Method: Composition-based stats.
Identities = 152/399 (38%), Positives = 242/399 (60%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+ L + + EK I R V++S + +S+ AA+ G ++R I+P++GDI F
Sbjct: 2 NADFLTVLEFWEREKGISRQVLISAVEESLLSAAKKAVGPARELRCIIDPKSGDIKAFAK 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
L V E+V + ISL A+ P +G V + P FGR+A Q AKQ ++Q +R A
Sbjct: 62 LIVSEKVVSKHDHISLPDAKKIKPDAQLGEEVEVEVTPAGFGRIASQYAKQSLMQHIRRA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
E+ + EFKD+VG+IISG V+R + +V VDLG + ++ E + E + G+R++ Y
Sbjct: 122 EKQLIFTEFKDRVGDIISGVVRRFDRSDVSVDLGKYEALLPNRERVPTEEYQIGERIRCY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ V GP+++LSR P+F++KLF +EV EI +G +++K ++R+PG R KLAV++ D
Sbjct: 182 VKAVENGPHGPEIILSRADPRFVIKLFQLEVSEINDGTIEIKGIAREPGFRTKLAVYTRD 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DPVGACVG+RG RV+ +V EL +EK+DI+ W P+ F+ NAL PA + +DE
Sbjct: 242 EKVDPVGACVGLRGQRVKNIVRELNNEKVDIIRWEPNIKGFLTNALAPAQLKTFEVDEAN 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
R++++V ++QLSLAIG+RGQN RL+S+LTGW +DI E + ++ E +
Sbjct: 302 KRVKIVVGEDQLSLAIGKRGQNARLSSKLTGWQVDIEPEVVHRMGFEEKVAEAVKTLAAI 361
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404
+ + A LV +G +E+L IS+++ I ++
Sbjct: 362 PGITQEQADTLVHQGLTRLEDLLQADISDLSGIPQIGDQ 400
>gi|254995056|ref|ZP_05277246.1| transcription elongation factor NusA [Anaplasma marginale str.
Mississippi]
Length = 512
Score = 356 bits (913), Expect = 7e-96, Method: Composition-based stats.
Identities = 203/522 (38%), Positives = 319/522 (61%), Gaps = 31/522 (5%)
Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64
+ LEL+++A VA +K ++ ++V+ + +++ +RS YG I+ I+ +TG +S+ R
Sbjct: 8 DNLELIRVARDVAEQKGLNLEMVVDAIEQALELVSRSKYG-DCKIKASIDRKTGVVSISR 66
Query: 65 LLEVVEEVENYTCQ--------------ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVA 110
VV + ++ + + + A + +G ++ +PLPP+D +
Sbjct: 67 QALVVNDDMSFDSEQYGIPLGEVSKYKLVKVSDAVADGKDVKVGDILFEPLPPVDVDYNS 126
Query: 111 VQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDET 170
+ A++ + Q + ER RQY EFKD+VG+++ G VKRVEY NV+VDL S+G + T
Sbjct: 127 AKVARRKVAQLIMIQERKRQYEEFKDRVGDLVYGVVKRVEYNNVVVDLNGSEGYLPVYNT 186
Query: 171 ISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVS 230
I E RP DRVK + E GPQ+ LSR +FM LF E+PE+Y+GIV +KA++
Sbjct: 187 IRGEVFRPNDRVKDVEEVRQEELSGPQIFLSRVSKRFMELLFKQEIPEVYDGIVSIKALA 246
Query: 231 RDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA 290
RDPGSR+K+AVFSSD ++DPVGAC+G RG R+Q +V+ELR E VV+ V +
Sbjct: 247 RDPGSRSKVAVFSSDKNVDPVGACIGARGVRIQNIVSELRGEDRRCVVF-IRPRE-VCSE 304
Query: 291 LRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350
A V KV++DEDV +IE++VP+ Q+SLAIGR GQN+RLAS+L GW ID+I +E +S
Sbjct: 305 RDSAEVVKVIIDEDVEKIELVVPENQVSLAIGRYGQNIRLASELVGWEIDVIGDETESTR 364
Query: 351 RQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410
+ K+ + + F+ ++V+EII LLV+EGF+ +E+L V ++EI +I+GF+EE AVE++
Sbjct: 365 KAKELSSGAKVFVDGLDVEEIIGQLLVSEGFSTIEDLDKVDVAEITAIDGFNEEIAVELK 424
Query: 411 GRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470
RA EYL + ++ + VSEE+ +P ++ + V L E GI+++ED+A D+
Sbjct: 425 KRAAEYLTRRREEALETLKNMSVSEEVLELPYLEIEDVVKLCEGGIRSVEDIASMCTDEF 484
Query: 471 LGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512
+ K+QV+S+I+ +R +MGWI
Sbjct: 485 YDM--------------VPKARLSKEQVDSIILESRKRMGWI 512
>gi|257869192|ref|ZP_05648845.1| transcription termination factor NusA [Enterococcus gallinarum EG2]
gi|257803356|gb|EEV32178.1| transcription termination factor NusA [Enterococcus gallinarum EG2]
Length = 398
Score = 355 bits (912), Expect = 7e-96, Method: Composition-based stats.
Identities = 149/394 (37%), Positives = 231/394 (58%), Gaps = 1/394 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L DA+ EK I +++V+ + ++ A + YG ++ VE + + G+I ++ + E
Sbjct: 4 EMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQKKGNIHVYAVKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
V EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREAER
Sbjct: 64 VTEEVMDSQLEVSLKEAMTINPAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K ++
Sbjct: 124 TIIYNEFSAYEKDILQGIVERQDNRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVFVS 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +GPQV +SR+HP + +LF EVPE+Y+G V++ +++R+ G R+K+AV S D++
Sbjct: 184 RVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGTVEIVSIAREAGDRSKVAVRSFDAN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV-G 306
+DPVG CVG +G RVQA+V EL+ E +DIV W+ D A F+ NAL PA VT V+ D D
Sbjct: 244 VDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNDDPAVFIANALNPAEVTDVIFDVDNPK 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
V+VP QLSLAIG+RGQN RLA++LTG+ IDI +E + K +A+
Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTGFKIDIKSESDMEEFYAKLEEGAYIDEGEAV 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEG 400
E + + E +
Sbjct: 364 ESQESTIEDNESHDEMIIASDMTADDYENMDFDE 397
>gi|299823034|ref|ZP_07054920.1| transcription termination factor NusA [Listeria grayi DSM 20601]
gi|299816563|gb|EFI83801.1| transcription termination factor NusA [Listeria grayi DSM 20601]
Length = 367
Score = 355 bits (912), Expect = 9e-96, Method: Composition-based stats.
Identities = 147/338 (43%), Positives = 226/338 (66%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
EL++ + +K I R+V++ + ++ A + + ++RV++N E G I + +
Sbjct: 4 ELMEALYVLENDKGISREVLVDAIEAALVSAYKRNFDKAENVRVDLNMENGSIRVLARKD 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV++V + +IS + A+ +P ++G VV + P DFGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 VVDQVFDSRLEISPEEAQKINPVYNVGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF D+ +I++G V+R + + V+LG + ++ ++E + E R DR+K Y+
Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYRAHDRIKVYLT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SRTHP + +LF MEVPEIY G V++K+V+R+ G R+K++V++++
Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYEGSVEIKSVAREAGDRSKISVYTANKE 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
IDPVGACVG +G+RVQA+V EL+ EKIDIV WS D TFV NAL P+ V V+++E
Sbjct: 244 IDPVGACVGPKGARVQAIVDELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345
V+VP QLSLAIG+RGQN RLA++LTGW IDI +E
Sbjct: 304 TTVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSET 341
>gi|42523053|ref|NP_968433.1| transcription elongation factor NusA [Bdellovibrio bacteriovorus
HD100]
gi|39575258|emb|CAE79426.1| N utilization substance protein A [Bdellovibrio bacteriovorus
HD100]
Length = 462
Score = 355 bits (912), Expect = 9e-96, Method: Composition-based stats.
Identities = 173/419 (41%), Positives = 263/419 (62%), Gaps = 7/419 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
+L ++ D V +K ID+ VV+ + + AAR YGT +I N +TG++ LF E
Sbjct: 8 DLSKVIDQVGKDKGIDKQVVIDAITQGMLVAARKKYGTYREIEAAYNEDTGEVELFEFKE 67
Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV E+ + +I L A+ DP++ + + + D GR+A Q+AKQ+I+QKVR+A
Sbjct: 68 VVPREKYIDEEVEIPLDEAQKLDPNVQLDDSIGIKMEASDLGRIAAQTAKQIIMQKVRDA 127
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER+ + EF+++ GEI SG +RVE G ++VDLG ++ I E I E +PGDR++ Y
Sbjct: 128 ERNIIFNEFEERKGEIASGIARRVEKGAIVVDLGRTEAYIPPREQIPGEQYKPGDRIQGY 187
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ +VR+ RGPQ+++SR ++++KLF MEVPEIY+G+V++ A +R+PG RAK+AV S D
Sbjct: 188 LSEVRQTTRGPQIIMSRADERYLMKLFEMEVPEIYDGVVEIMAAAREPGQRAKIAVRSKD 247
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+S+DPVGACVGM+GSRVQ +V ELR EKIDIV W D F NAL PA +++V LD+
Sbjct: 248 NSVDPVGACVGMKGSRVQNIVQELRGEKIDIVPWDEDITRFACNALAPAEISRVFLDDAN 307
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
+E++VP QLSLAIG+RGQNVRLA++LT W +DII+E + + M
Sbjct: 308 REMEIVVPDSQLSLAIGKRGQNVRLAAKLTTWKLDIISESSAASRTAESIFN----LMLI 363
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE-ETAVEIQGRAREYLEGIDIT 423
+ E +A + GF + +A + E+ +I G+D+ + A ++ A+ + +
Sbjct: 364 PGMSETMAQNIFQSGFGSFQAVATAAVEELMTIPGYDDPDKAEKLSKEAKGLVAKYESE 422
>gi|257898238|ref|ZP_05677891.1| transcription termination factor NusA [Enterococcus faecium Com15]
gi|257836150|gb|EEV61224.1| transcription termination factor NusA [Enterococcus faecium Com15]
Length = 391
Score = 355 bits (912), Expect = 9e-96, Method: Composition-based stats.
Identities = 153/391 (39%), Positives = 231/391 (59%), Gaps = 9/391 (2%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L DA+ EK I +++V+ + ++ A + YG ++ VE + G I ++ + E
Sbjct: 4 EMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQIKGKIHVYAVKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
V EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREAER
Sbjct: 64 VTEEVMDSQLEVSLKDALLINPAYEIGDTIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y+
Sbjct: 124 TIIYNEFSAYEKDIMQGIVERQDKRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVYVS 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +GPQV +SR+HP + +LF EVPE+Y+GIV++ +++R+ G R+K+AV S+D +
Sbjct: 184 RVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGIVEIVSIAREAGDRSKVAVRSNDQN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV-G 306
ID VG CVG +G RVQA+V EL+ E +DIV W+ D A F+ NAL PA V V+ DE
Sbjct: 244 IDAVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAVFIANALNPAQVMDVIFDETNPK 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
V+VP QLSLAIG+RGQN RLA++LT IDI +E + + E + Q
Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTNHKIDIKSESDMA--------EFYEKQEQQN 355
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIAS 397
+E+ +V D E A +E
Sbjct: 356 ETEELHDEAIVQSDLTDDEYEAIAFNNETVE 386
>gi|257865909|ref|ZP_05645562.1| transcription termination factor NusA [Enterococcus casseliflavus
EC30]
gi|257872242|ref|ZP_05651895.1| transcription termination factor NusA [Enterococcus casseliflavus
EC10]
gi|257799843|gb|EEV28895.1| transcription termination factor NusA [Enterococcus casseliflavus
EC30]
gi|257806406|gb|EEV35228.1| transcription termination factor NusA [Enterococcus casseliflavus
EC10]
Length = 404
Score = 355 bits (912), Expect = 9e-96, Method: Composition-based stats.
Identities = 153/398 (38%), Positives = 236/398 (59%), Gaps = 7/398 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L DA+ EK I +++V+ + ++ A + YG ++ VE + + G+I ++ + E
Sbjct: 4 EMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQKKGNIHVYAVKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
V EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREAER
Sbjct: 64 VTEEVMDSQLEVSLKEAMTINPAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K ++
Sbjct: 124 NIIYNEFSAYEKDILQGIVERQDNRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVFVS 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +GPQV +SR+HP + +LF EVPE+Y+G V++ +++R+ G RAK+AV S D++
Sbjct: 184 RVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGTVEIVSIAREAGDRAKVAVRSFDAN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV-G 306
+DPVG CVG +G RVQA+V EL+ E +DIV W+ D A F+ NAL PA V+ V+ D D
Sbjct: 244 VDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAIFIANALNPAEVSDVIFDVDNPK 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
V+VP QLSLAIG+RGQN RLA++LTG+ IDI +E + K A
Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTGFKIDIKSETDMEEFYAKLDEGDYIDEYDAT 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404
+ E +V E A I S + ++
Sbjct: 364 ASEA------ADESSTEVTESAETVDEAILSSDMTADD 395
>gi|296330875|ref|ZP_06873350.1| transcription elongation factor NusA [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305674393|ref|YP_003866065.1| transcription translation coupling factor involved in Rho-dependent
transcription termination [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296151880|gb|EFG92754.1| transcription elongation factor NusA [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305412637|gb|ADM37756.1| transcription translation coupling factor involved in Rho-dependent
transcription termination [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 372
Score = 355 bits (911), Expect = 1e-95, Method: Composition-based stats.
Identities = 150/364 (41%), Positives = 228/364 (62%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + EK I +++++ + ++ A + + ++RV++N ETG I +F +
Sbjct: 4 ELLDALTILEKEKGISKEIIIEAIEAALISAYKRNFNQAQNVRVDLNRETGSIRVFARKD 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +IS++ A+ P +G VV + P DFGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 VVDEVYDQRLEISIEEAQGIHPEYMVGDVVEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF D+ +I++G V+R++ + V LG + ++ +E + E+ +P DR+K YI
Sbjct: 124 GVIYSEFIDREEDIMTGIVQRLDNKFIYVSLGKIEALLPVNEQMPNESYKPHDRIKVYIT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V + D
Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEIEVPEIYDGTVELKSVAREAGDRSKISVRTDDPD 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVG+CVG +G RVQA+V EL+ EKIDIV WS D FV NAL P+ V V+++E+
Sbjct: 244 VDPVGSCVGPKGQRVQAIVNELKGEKIDIVNWSSDPVEFVANALSPSKVLDVIVNEEEKA 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + +
Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDARELGIYPRELEEEDDEPLFT 363
Query: 368 VDEI 371
E
Sbjct: 364 EPET 367
>gi|221632782|ref|YP_002522004.1| transcription termination factor NusA [Thermomicrobium roseum DSM
5159]
gi|221155810|gb|ACM04937.1| transcription termination factor NusA [Thermomicrobium roseum DSM
5159]
Length = 439
Score = 355 bits (911), Expect = 1e-95, Method: Composition-based stats.
Identities = 150/346 (43%), Positives = 224/346 (64%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+ +L VA E+ I R+ V+ + +++ + G+ ++ +EI+ TG I +F
Sbjct: 2 KSDLYTAIAQVAAERGIPREAVMESVQQALRTVYKKATGSDEEVEIEIDVNTGKIRIFAP 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVE+V + +IS++ AR DP +G +V P +FGR+A Q+AKQVI+Q++R+
Sbjct: 62 KRVVEKVNDPLSEISIEEARKIDPRAIVGDIVRIERQPSNFGRIAAQTAKQVILQRIRDF 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ERD Y EF D+VGE+++GTV+RV+ VI+ G ++ ++ E I E RPG R+K Y
Sbjct: 122 ERDTIYNEFIDRVGEVLTGTVQRVDARAVILSFGKAEAILPAREQIPGERYRPGQRLKVY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ DV ++ +GPQ+L+SRTHP + +L +EVPE+ +G V+V A++R+PG R+K+AV +
Sbjct: 182 LVDVTKDAKGPQLLVSRTHPNLIKRLLELEVPEVASGAVEVMAIAREPGQRSKVAVAARQ 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DPVGACVG+RG R+Q++VTEL EKID++ WS D TF+ NAL PA V+L+ED
Sbjct: 242 DKVDPVGACVGVRGVRIQSIVTELSGEKIDVIEWSSDIRTFIANALSPAKPITVILNEDE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351
V+VP EQ+S AIG+ GQN RLA +LTGW IDI E
Sbjct: 302 KVARVVVPPEQMSQAIGKDGQNARLAYKLTGWRIDIKDPESLKGEE 347
>gi|81428862|ref|YP_395862.1| transcription elongation factor NusA [Lactobacillus sakei subsp.
sakei 23K]
gi|78610504|emb|CAI55555.1| Transcription elongation protein NusA (Transcription
termination-antitermination factor NusA) [Lactobacillus
sakei subsp. sakei 23K]
Length = 405
Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats.
Identities = 145/402 (36%), Positives = 223/402 (55%), Gaps = 1/402 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L DA+ EK + +++V+ + ++ A + YG ++ VE + + G+I ++ + E
Sbjct: 4 EMLGALDALEQEKGVKKEIVIEALEAALVSAYKRNYGQAQNVEVEFDQKKGNIHVYAVKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
V +EV + ++S + A + + + ++G + + P DFGR+A Q+AKQVI+Q+VREAER
Sbjct: 64 VTDEVFDSRLEVSYQDALEINKAYEVGDTIRFEVTPKDFGRIAAQTAKQVIMQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y E+ EI+ G V+R + + V+LG + V+ + + I E DR+K Y+
Sbjct: 124 SIIYNEYSQYENEIMQGIVERRDNKFIYVNLGKIEAVLSKQDQIPNEVYNAHDRIKVYVS 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +GPQV +SRTHP + +LF EVPEIY+G V++ +++R+ G R K+AV S+D +
Sbjct: 184 KVENTTKGPQVFVSRTHPDLVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVRSTDPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE-DVG 306
+DPVG CVG +G RVQ VV EL E +DIV W D + ++ NAL PA V V ++ +
Sbjct: 244 VDPVGTCVGPKGQRVQLVVNELHGENMDIVKWEEDPSDYIANALNPAEVIAVQFNDGNEH 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
VIVP QLSLAIG++GQN RLA++LTG+ IDI E E D + +
Sbjct: 304 TCTVIVPDYQLSLAIGKKGQNARLAAKLTGYKIDIKPESEVEFVDGDDSEDESAVVEGFE 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408
A I + A EE E
Sbjct: 364 EETITPETTEETVAVAPETAEVAEDIEQPAETVVDSEEQPQE 405
>gi|315282175|ref|ZP_07870640.1| transcription termination factor NusA [Listeria marthii FSL S4-120]
gi|313614179|gb|EFR87858.1| transcription termination factor NusA [Listeria marthii FSL S4-120]
Length = 372
Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats.
Identities = 147/338 (43%), Positives = 223/338 (65%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E
Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 AVEQVFDSRLEISMEEAHKLNPVYQPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+
Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++
Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E
Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSDDPFTFVANALSPSKVLDVIVNEADQA 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345
VIVP QLSLAIG+RGQN RLA++LTGW IDI +E
Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSET 341
>gi|325569920|ref|ZP_08145914.1| transcription elongation factor NusA [Enterococcus casseliflavus
ATCC 12755]
gi|325157043|gb|EGC69211.1| transcription elongation factor NusA [Enterococcus casseliflavus
ATCC 12755]
Length = 404
Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats.
Identities = 151/391 (38%), Positives = 233/391 (59%), Gaps = 1/391 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L DA+ EK I +++V+ + ++ A + YG ++ VE + + G+I ++ + E
Sbjct: 4 EMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQKKGNIHVYAVKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
V EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREAER
Sbjct: 64 VTEEVMDSQLEVSLKEAMTINPAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K ++
Sbjct: 124 NIIYNEFSAYEKDILQGIVERQDNRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVFVS 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +GPQV +SR+HP + +LF EVPE+Y+G V++ +++R+ G RAK+AV S D++
Sbjct: 184 RVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGTVEIVSIAREAGDRAKVAVRSFDAN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV-G 306
+DPVG CVG +G RVQA+V EL+ E +DIV W+ D A F+ NAL PA V+ V+ D D
Sbjct: 244 VDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAIFIANALNPAEVSNVIFDVDNPK 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
V+VP QLSLAIG+RGQN RLA++LTG+ IDI +E + K A
Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTGFKIDIKSETDMEEFYAKLDEGDYIDEYDAN 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIAS 397
+ A A+ + A + A
Sbjct: 364 ASEAAEEISTEATESAETVDEAILPSDMTAD 394
>gi|260583738|ref|ZP_05851486.1| transcription termination factor NusA [Granulicatella elegans ATCC
700633]
gi|260158364|gb|EEW93432.1| transcription termination factor NusA [Granulicatella elegans ATCC
700633]
Length = 369
Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats.
Identities = 137/343 (39%), Positives = 213/343 (62%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+++ + + EK I ++VV++ + ++ A + YG ++ VE + + G + ++ + E
Sbjct: 4 EMIKALNILEEEKGISKEVVITALEAALVSAYKKNYGQAQNVEVEFDAKKGKMHVYAVKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVE V + T ++S+ A + + ++G + + P DFGR+A Q+AKQVI+Q++R+AER
Sbjct: 64 VVEYVFDSTLEVSIDEAHELHKAYEVGDKIRFEVTPKDFGRIAAQTAKQVIMQRLRDAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF + EI++G V R ++ V V+LG + + + I E P R+K +
Sbjct: 124 TNIYNEFIEYENEIMTGVVDRQDFRYVYVNLGKIVAGMTKQDQIPTEEYLPDQRIKVLVS 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +GP + +SRTHP + +LF EVPEIY G+V++ +++R+ G RAK+AV S D++
Sbjct: 184 KVDNTTKGPLIFVSRTHPDLLKRLFEQEVPEIYEGVVEIVSIAREAGDRAKVAVRSRDTN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVG CVG RG RVQ +V EL E +DIV W+ D + ++ NAL PA V KV D D
Sbjct: 244 LDPVGTCVGPRGQRVQNIVNELNGENMDIVEWNEDPSVYIANALNPAQVVKVDFDSDRNS 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350
V+VP QLSLAIG+RGQN RLA++LTG+ IDI +E
Sbjct: 304 CIVVVPDHQLSLAIGKRGQNARLAAKLTGFRIDIKSESAYQEY 346
>gi|56963996|ref|YP_175727.1| transcription elongation factor NusA [Bacillus clausii KSM-K16]
gi|56910239|dbj|BAD64766.1| transcriptional elongation protein [Bacillus clausii KSM-K16]
Length = 368
Score = 355 bits (910), Expect = 2e-95, Method: Composition-based stats.
Identities = 150/367 (40%), Positives = 224/367 (61%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E ++ + +K I ++V++ + ++ + +G ++RV++N + G I +F
Sbjct: 2 NSEFMEALSTLEADKGIKKEVIIEAIEAALISGYKRNFGQAQNVRVDVNRDNGSIRVFAR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVEEV + +IS A+ +P ++ +V + P DFGR+A Q+AKQV+ Q+VREA
Sbjct: 62 KVVVEEVFDKRLEISEAEAQRINPHYEVDDIVEIEVTPKDFGRIAAQTAKQVVTQRVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y +F D+ +I++G V+R ++ + VDLG + ++ E + E + DR+K+Y
Sbjct: 122 ERGIIYSDFIDREEDIMNGIVQRQDHRFIYVDLGKVEALLPLSEQMPNETYKHNDRIKAY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I V + +GPQ+L+SRTHP + +LF +EVPEIY+G V++K+VSR+ G R+K+AV S +
Sbjct: 182 ITKVEKTTKGPQILISRTHPGLLKRLFELEVPEIYDGTVEIKSVSREAGDRSKIAVHSDN 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+D VGACVG RG RVQ +V EL+ EKIDIV WS D +V NAL PA V KV + E
Sbjct: 242 PEVDSVGACVGQRGQRVQTIVDELKGEKIDIVEWSEDPVVYVANALSPAKVMKVNVLEGE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
+VIVP QLSLAIG+RGQN RLA++LTGW IDI +E E D +
Sbjct: 302 KMTQVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESEARELGLLDEENENDELEEF 361
Query: 366 INVDEII 372
N +
Sbjct: 362 TNEENER 368
>gi|238019442|ref|ZP_04599868.1| hypothetical protein VEIDISOL_01311 [Veillonella dispar ATCC 17748]
gi|237864141|gb|EEP65431.1| hypothetical protein VEIDISOL_01311 [Veillonella dispar ATCC 17748]
Length = 358
Score = 355 bits (910), Expect = 2e-95, Method: Composition-based stats.
Identities = 152/354 (42%), Positives = 223/354 (62%)
Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66
EL+Q + +K +V+ + ++ +A R + D V I+ ETGD +
Sbjct: 3 QELIQAVMVLTKQKGFAPEVIFESLEAALLQAYRKEPTSNPDAYVVIDRETGDYKVMAKK 62
Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
+VVE VE +ISL AR D +IG VV + P +FGR A +AKQ++IQ+++EAE
Sbjct: 63 QVVETVELPETEISLLEARKIDKRFEIGDVVEVDVTPANFGRSAAHTAKQMLIQRLKEAE 122
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
R Y E+ + G+II+G + RVE NV ++LG ++ ++ E I+ E R GDR+K YI
Sbjct: 123 RSVVYEEYYSREGDIITGVITRVEGKNVFINLGKTEAILPPTEQIATETYREGDRIKCYI 182
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
+V++ +GPQ+++SRTHP + +LF +EVPEIY G+V++K+V+R+PG R+K+AV+S D
Sbjct: 183 VEVKKTTKGPQIMISRTHPGLLKRLFELEVPEIYEGVVELKSVAREPGMRSKIAVYSRDE 242
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
++DPVGACVG +G RVQ +V EL DEKIDIV W D A ++ N+L PA V V + E+
Sbjct: 243 NVDPVGACVGPKGQRVQHIVDELHDEKIDIVKWDEDPAIYIANSLSPAKVVSVDVSEEEK 302
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
V+VP QLSLAIG+ GQN RLA++LT W IDI +E + + F
Sbjct: 303 SSYVVVPDYQLSLAIGKAGQNARLAAKLTNWKIDIKSETQAAEEPFTGFGNAED 356
>gi|258404630|ref|YP_003197372.1| transcription elongation factor NusA [Desulfohalobium retbaense DSM
5692]
gi|257796857|gb|ACV67794.1| NusA antitermination factor [Desulfohalobium retbaense DSM 5692]
Length = 440
Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats.
Identities = 167/406 (41%), Positives = 260/406 (64%), Gaps = 5/406 (1%)
Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66
+EL + D ++ ++ IDRD+++ + ++++ + + DI V + E GDI +++
Sbjct: 3 MELKKAIDQISKDRGIDRDLLIDTLEEAVRSSVNKKFKNKLDIEVSFDEEAGDIEVYQFK 62
Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
VVEEV++ +ISL AR DP++ + + + D GR+A QSAKQVIIQ++R+AE
Sbjct: 63 VVVEEVDDPNTEISLDEARIEDPNVQLEDELGFRMEISDLGRIAAQSAKQVIIQRMRDAE 122
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
++ Y E+KD+ GEIISG ++R + I++LG ++ ++ + E I RE R GDRV+ YI
Sbjct: 123 QEIIYEEYKDRRGEIISGIIQRRDRAGWIINLGRTEAILPKQEQIPRERFRRGDRVQGYI 182
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
DVR+E RGPQ+++SR+HP +M LF EVPE+ +G V + V+RDPG RAK+AV S DS
Sbjct: 183 IDVRKEGRGPQIVVSRSHPDYMAALFKREVPEVGDGTVTIMGVARDPGKRAKVAVLSQDS 242
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
+DPVGACVG+RGSR+Q +V E + E+IDIVVW+ D AT+ +NAL PA ++++ +D+
Sbjct: 243 DVDPVGACVGVRGSRIQNIVQEFKGERIDIVVWNHDVATYAMNALSPAKISRMTVDDVEK 302
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+EV+VP +QL+LAIGR+GQNV+LAS+L GW IDIITE + + + I
Sbjct: 303 TLEVVVPDDQLTLAIGRKGQNVKLASKLLGWKIDIITESRYGADPSDQADLEQAEHVTGI 362
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412
D V G ++ L ++A+++G D +++
Sbjct: 363 PTD-----HFVQAGLGSLDALREASDEQLAAVDGMDTSKMADLRAA 403
>gi|332686768|ref|YP_004456542.1| transcription termination protein NusA [Melissococcus plutonius
ATCC 35311]
gi|332370777|dbj|BAK21733.1| transcription termination protein NusA [Melissococcus plutonius
ATCC 35311]
Length = 396
Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats.
Identities = 145/391 (37%), Positives = 229/391 (58%), Gaps = 1/391 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L +A+ EK I +++V+ + ++ A + YG ++ VE N + GDI ++ + E
Sbjct: 4 EILNALNALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFNNKKGDIHVYAVKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
V EEV + +I+L+ A + + +IG V+ + P DFGR+A Q+AKQVI+Q+VREAER
Sbjct: 64 VTEEVMDSQLEIALEDALAINGAYEIGDVIHFEVTPKDFGRIAAQTAKQVILQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF + +I+ G V+R + + V+LG + V+ + + + E + DR+K Y+
Sbjct: 124 TIIYNEFSEYENDIMQGIVERQDRRYIYVNLGKIEAVLSKQDQMPNEFYQAHDRIKVYVS 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +GPQV +SR+HP + +LF E+PE+Y+GIV++ +++R+ G R+K+AV S D +
Sbjct: 184 KVENTSKGPQVFVSRSHPDLLKRLFEQEIPEVYDGIVEIVSIAREAGDRSKIAVRSIDPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
IDPVG CVG +G RVQA+V EL+ E +DIV W+ D ++ NAL PA V V+ D + +
Sbjct: 244 IDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPVVYISNALNPAQVVDVIFDPENNK 303
Query: 308 -IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
++VP QLSLAIG+RGQN RLA++LTG+ IDI E + ++ E +
Sbjct: 304 VCTIVVPDHQLSLAIGKRGQNARLAAKLTGFKIDIKAESNMADYYEQKQEEIEDEEIVHS 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIAS 397
+ L+ E E
Sbjct: 364 EMTSDDYELIKHTNDEQESEQEQAIEHESEE 394
>gi|315641143|ref|ZP_07896222.1| transcription elongation factor NusA [Enterococcus italicus DSM
15952]
gi|315483151|gb|EFU73668.1| transcription elongation factor NusA [Enterococcus italicus DSM
15952]
Length = 376
Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats.
Identities = 148/359 (41%), Positives = 225/359 (62%), Gaps = 1/359 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L DA+ EK I +D+V+ + ++ A + YG ++ VE + + G+I ++ + E
Sbjct: 4 EMLNALDALEAEKGISKDIVIDALEAALISAYKRHYGQSQNVEVEFDRKKGNIHVYAVKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
V EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREAER
Sbjct: 64 VTEEVMDSQLEVSLKEAMTINPAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF +I+ G V+R + + V+LG + V+ + + ++ E +P DR+K Y+
Sbjct: 124 SIIYNEFSAYEKDIMQGIVERQDSRYIYVNLGKIEAVLSKQDQMANEFYQPHDRIKVYVS 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +GPQV +SR+HP + +LF EVPE+Y+G V++ +++R+ G R+K+AV S D +
Sbjct: 184 RVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGTVEIVSIAREAGDRSKIAVRSHDEN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV-G 306
IDPVG CVG +G RVQA+V EL+ E +DIV W D A F+ NAL PA VT V+ D
Sbjct: 244 IDPVGTCVGPKGQRVQALVNELKGENMDIVEWDEDPAIFIANALNPAEVTDVLFDTTNPK 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
V+VP QLSLAIG+RGQN RLA++LTG IDI +E + + ++ + Q +
Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTGHKIDIKSESDMAEFYEELDRQEAQADVSE 362
>gi|160880908|ref|YP_001559876.1| NusA antitermination factor [Clostridium phytofermentans ISDg]
gi|160429574|gb|ABX43137.1| NusA antitermination factor [Clostridium phytofermentans ISDg]
Length = 354
Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats.
Identities = 147/343 (42%), Positives = 224/343 (65%), Gaps = 2/343 (0%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
EL++ + + EK I ++V+L M +S+ A ++ +G +I+V I+ TG +S+F
Sbjct: 4 NKELIEALNQIEKEKDISKEVLLDAMENSLVAACKNHFGKADNIKVYIDRTTGAVSVFAE 63
Query: 66 LEVVEEVENYTCQISLKVA--RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
VVE+V++ +ISL A + ++G +V + P +FGR+A Q AKQV++QK+R
Sbjct: 64 RVVVEQVQDPVLEISLAEATMKFPKGKYELGDIVQVEVTPKNFGRIAAQKAKQVVVQKIR 123
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183
E ER + ++ + +I++G V+R NV ++LG D V+ +E I E+ RP DR+K
Sbjct: 124 EEERKVLFNQYYGREKDIVTGIVQRYVGNNVSINLGKVDAVLMENEQIKGEHFRPTDRIK 183
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
Y+ +V+ +GP++ +SRTHP+ + +LF EV E+ GIV++K++SR+ G R K+AV S
Sbjct: 184 LYVLEVKDTTKGPKITVSRTHPELVKRLFEAEVTEVKEGIVEIKSISREAGDRTKMAVSS 243
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
+D ++DPVGACVG+ G+RV A+V EL EKIDIV WS D A + NAL PA V V + E
Sbjct: 244 NDPNVDPVGACVGLNGARVNAIVNELGGEKIDIVNWSDDPAELIENALSPAKVVSVDVSE 303
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346
+VIVP QLSLAIGR+GQN RLA++LTG+ IDI +E +
Sbjct: 304 GEMSAKVIVPDYQLSLAIGRQGQNARLAARLTGYKIDIKSESQ 346
>gi|16803362|ref|NP_464847.1| transcription elongation factor NusA [Listeria monocytogenes EGD-e]
gi|224501735|ref|ZP_03670042.1| transcription elongation factor NusA [Listeria monocytogenes FSL
R2-561]
gi|16410738|emb|CAC99400.1| nusA [Listeria monocytogenes EGD-e]
Length = 372
Score = 354 bits (908), Expect = 3e-95, Method: Composition-based stats.
Identities = 147/338 (43%), Positives = 223/338 (65%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E
Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 AVEQVFDSRLEISMEEAHKLNPVYQPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+
Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++
Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E
Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345
VIVP QLSLAIG+RGQN RLA++LTGW IDI +E
Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSET 341
>gi|293374143|ref|ZP_06620477.1| transcription termination factor NusA [Turicibacter sanguinis
PC909]
gi|325837442|ref|ZP_08166424.1| transcription termination factor NusA [Turicibacter sp. HGF1]
gi|292647246|gb|EFF65222.1| transcription termination factor NusA [Turicibacter sanguinis
PC909]
gi|325490974|gb|EGC93272.1| transcription termination factor NusA [Turicibacter sp. HGF1]
Length = 351
Score = 353 bits (907), Expect = 3e-95, Method: Composition-based stats.
Identities = 150/346 (43%), Positives = 217/346 (62%)
Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
N E + + EK I +D+++ ++ A + + ++++VEIN TG + L+
Sbjct: 1 MNTKEFFAALELLEKEKGISKDIIIEAFEHALISAYKKNFNQATNVKVEINEVTGTVKLY 60
Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+ VVEEV QISL A +P G +++ + P DFGR+A Q+AKQV+ Q++R
Sbjct: 61 QQKTVVEEVTRPQEQISLDEAMRLNPHYQEGDIINFEVTPKDFGRIATQTAKQVVKQRIR 120
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183
+AERD + EFKD+ GEI++G V + + +V VDLG + ++ E ++ + ++P R+K
Sbjct: 121 QAERDNLFQEFKDREGEIVTGIVVKDDGKHVFVDLGKIEALLPIREIMNPDEIKPNSRIK 180
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
YI + + +GP V +SR P + +LF +EVPEIY+G V++ +V+RD G R K+ V S
Sbjct: 181 VYISKIESKNKGPVVYVSRKDPNLIKRLFELEVPEIYDGTVEIMSVARDAGDRTKICVAS 240
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
D ++DPVGACVG G RVQ +V EL EKIDI+ +S D A V NAL PA V+KVV+DE
Sbjct: 241 EDENVDPVGACVGPSGQRVQNIVDELNGEKIDIIQFSKDPAVLVANALSPAQVSKVVVDE 300
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
V+VP QLSLAIG+RGQN RLA+QLTGW IDI E E
Sbjct: 301 AKKATVVLVPDNQLSLAIGKRGQNARLAAQLTGWKIDIKPESEADN 346
>gi|251797400|ref|YP_003012131.1| NusA antitermination factor [Paenibacillus sp. JDR-2]
gi|247545026|gb|ACT02045.1| NusA antitermination factor [Paenibacillus sp. JDR-2]
Length = 365
Score = 353 bits (907), Expect = 3e-95, Method: Composition-based stats.
Identities = 141/363 (38%), Positives = 227/363 (62%)
Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66
++ ++ + +K I ++V+L + ++ + + + ++RV+IN +G I ++
Sbjct: 3 MDFIEALSEIERDKGIAKEVLLEAIEAALISSYKRNFNAAQNVRVDINRHSGVIKVYARK 62
Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
VV+EV + +I++ +R+ +P + + + P DFGR+A Q+AKQV+ Q++REAE
Sbjct: 63 TVVDEVLDPRLEITVDASREINPHYQLDDIADIEVTPRDFGRIAAQTAKQVVTQRIREAE 122
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
R Y F DK +I++G V+R + N+ VDLG + V+ E + + + GDRVKSYI
Sbjct: 123 RGLIYNAFIDKEEDIVNGIVQRQDTRNLFVDLGKVEAVLPLTELMPTDKFKHGDRVKSYI 182
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
V +GPQ++LSRTHP + +LF +EVPEIY+G+V++++V+R+ G R+K+AV+S +
Sbjct: 183 TKVENTTKGPQIILSRTHPGLLKRLFELEVPEIYDGVVEIRSVAREAGFRSKIAVYSRNE 242
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
+DPVG+CVG +G RVQ +V EL EKIDIV WS +V NAL P+ V +V++ E
Sbjct: 243 EVDPVGSCVGPKGMRVQTIVNELTGEKIDIVRWSESVEEYVANALSPSKVLEVIVFEQEK 302
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
VIVP QLSLAIG +GQN RLA++LTGW IDI +E + + + ++
Sbjct: 303 MARVIVPDYQLSLAIGIKGQNARLAAKLTGWKIDIKSETQAEQEYGRPKTTASTMHQDSV 362
Query: 367 NVD 369
++D
Sbjct: 363 SID 365
>gi|310828067|ref|YP_003960424.1| hypothetical protein ELI_2479 [Eubacterium limosum KIST612]
gi|308739801|gb|ADO37461.1| hypothetical protein ELI_2479 [Eubacterium limosum KIST612]
Length = 411
Score = 353 bits (907), Expect = 3e-95, Method: Composition-based stats.
Identities = 160/418 (38%), Positives = 255/418 (61%), Gaps = 15/418 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E ++ DA+ EK+ID++ ++ + SI+ A + YG + D+ V+++ +TG+I+++
Sbjct: 2 NAEFMRALDALEAEKNIDKEELIDAIEVSIESAYKKNYGNVQDVDVKLDRDTGEITVYAT 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
++VE+VEN QISL+ AR+ DP+ ++G V + P DFGR+A Q+AKQ+I+Q+++EA
Sbjct: 62 RDIVEDVENLETQISLEEAREIDPTYEVGDVYRKVITPRDFGRIAAQNAKQLIVQRIKEA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER+ Y E+ ++ E+++G + R+E GNV VD+GNS+G + E + E PG R+K Y
Sbjct: 122 ERNMVYNEYLERQEEVMTGIINRIERGNVFVDIGNSEGCMPPMEQVPGEKYYPGQRLKVY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ VR+ +GPQ+ LSRTHP + +LF EVPEIY+GIV + ++SR+ GSR K+AV ++D
Sbjct: 182 LLMVRKTTKGPQLRLSRTHPGLVKRLFETEVPEIYDGIVDIVSISREAGSRTKIAVKAND 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
SS+DPVGACVG +G RVQ ++ EL EKIDI+ +S D ++ NAL PA + +++ ++
Sbjct: 242 SSVDPVGACVGQKGIRVQNIINELNGEKIDIIKYSDDVREYLSNALSPAKIYRILPNKTE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
+V QLSLAIG+ GQNVRLA++L W IDI ++ + R N
Sbjct: 302 KTAIAVVDDFQLSLAIGKEGQNVRLAAKLASWKIDIKSKSDYE--RMLAENPDFDADYTN 359
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423
+E I L E + E+ I DE+ A + + + ++
Sbjct: 360 AGEEEDILDELKNE------------LDEVLDI-QIDEDNAESLDNVLDDLVMTDELE 404
>gi|51246466|ref|YP_066350.1| transcription elongation factor NusA [Desulfotalea psychrophila
LSv54]
gi|50877503|emb|CAG37343.1| related to transcription termination factor (NusA) [Desulfotalea
psychrophila LSv54]
Length = 466
Score = 353 bits (907), Expect = 3e-95, Method: Composition-based stats.
Identities = 179/452 (39%), Positives = 280/452 (61%), Gaps = 17/452 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
+L +I D ++ ++ ID+ +++S + ++++ AA+ +G+ DI V N E G++ +F+
Sbjct: 4 DLKRIIDQISRDRGIDKGILVSAIEEAVESAAKKKFGSRRDIEVRYNEEYGEVDVFQFRT 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM-DFGRVAVQSAKQVIIQKVREAE 126
VVEE+E+ +I+L+ AR DP++ +G + + + + D GR+A QSAKQVII ++++AE
Sbjct: 64 VVEEIEDEQTEIALEDARILDPAVQLGDDLGEKMSNITDLGRIAAQSAKQVIINRMKDAE 123
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
RD Y +KD+VGE++SG V+R E GN++V+LG +D ++ ++ I + + GDR+++Y+
Sbjct: 124 RDVIYDMYKDRVGEVVSGIVQRFERGNMVVNLGRTDAILPKEHQIPKRTFKQGDRIRAYL 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
+VR+ R Q++LSRT +F+ KLF MEVPE+ GIV+V VSR+PG RAK+AV SS+S
Sbjct: 184 LEVRQTSRDCQLILSRTCDEFLEKLFQMEVPEMSEGIVRVLGVSREPGFRAKIAVSSSES 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
+DPVGACVGM+GSRVQ VV EL+ E+IDIV WSPD A +V NAL PA V+ V DE+
Sbjct: 244 DVDPVGACVGMKGSRVQNVVQELQGERIDIVTWSPDIAKYVYNALAPAHVSMVRNDEERN 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+ V+VP +QLSLAIGR+GQNVRLAS+L G ID+ +E+ + + + +
Sbjct: 304 SLLVVVPNDQLSLAIGRQGQNVRLASRLLGCRIDVKSEQRYANLQDPGYQSLLKIH---- 359
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE----------- 415
+DE +A L A G LA +I+++ + +EE A + A+
Sbjct: 360 GIDEGLADQLWARGIVSTAVLAQTEIADLTVLRAINEEFAAALVKDAQANPFVAEETEIS 419
Query: 416 -YLEGIDITLQKKIRELGVSEELCSIPGIDSK 446
+ + SEE + I
Sbjct: 420 SVEASEAENINADTVDAESSEEAVVVEEITDN 451
>gi|303229675|ref|ZP_07316463.1| transcription termination factor NusA [Veillonella atypica
ACS-134-V-Col7a]
gi|303232179|ref|ZP_07318882.1| transcription termination factor NusA [Veillonella atypica
ACS-049-V-Sch6]
gi|302513285|gb|EFL55324.1| transcription termination factor NusA [Veillonella atypica
ACS-049-V-Sch6]
gi|302515800|gb|EFL57754.1| transcription termination factor NusA [Veillonella atypica
ACS-134-V-Col7a]
Length = 361
Score = 353 bits (905), Expect = 5e-95, Method: Composition-based stats.
Identities = 153/351 (43%), Positives = 222/351 (63%)
Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66
EL+Q + +K +V+ + ++ +A R + D VE+N ETG +
Sbjct: 3 QELIQAVMVLTKQKGFAPEVIFESLEAALLQAYRKEPHSNPDAYVELNRETGAYKVMAKK 62
Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
+VVE VE +ISL AR D +IG +V + P +FGR A +AKQ++IQ+++EAE
Sbjct: 63 QVVETVEFPETEISLLDARKIDKRYEIGDIVEADVTPANFGRSAAHTAKQMLIQRLKEAE 122
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
R Y E+ + G+II+G + RVE NV ++LG ++ ++ E I E GDR+K YI
Sbjct: 123 RSVVYEEYYSREGDIITGVITRVEGKNVYINLGKTEAILPPTEQIGTETYHEGDRIKCYI 182
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
+V++ +GPQ+++SRTHP + +LF +EVPEIY G+V++K+V+R+PG R+K+AV+S D
Sbjct: 183 VEVKKTTKGPQIMISRTHPGLLKRLFELEVPEIYEGVVELKSVAREPGMRSKIAVYSRDE 242
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
SIDPVGACVG +G RVQ +V EL DEKIDIV W D A ++ N+L PA V V + E+
Sbjct: 243 SIDPVGACVGPKGQRVQHIVDELHDEKIDIVKWDEDPAIYIANSLSPAKVISVDVSEEEK 302
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
V+VP QLSLAIG+ GQN RLA++LT W IDI +E + + N F
Sbjct: 303 SSYVVVPDYQLSLAIGKAGQNARLAAKLTNWKIDIKSETQAAENPFTGFTS 353
>gi|158320557|ref|YP_001513064.1| NusA antitermination factor [Alkaliphilus oremlandii OhILAs]
gi|158140756|gb|ABW19068.1| NusA antitermination factor [Alkaliphilus oremlandii OhILAs]
Length = 345
Score = 353 bits (905), Expect = 6e-95, Method: Composition-based stats.
Identities = 139/344 (40%), Positives = 226/344 (65%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E + + + +K I +D+++ + ++ + + +G+ ++RVEIN + G++ ++
Sbjct: 2 NAEFTEALEQIEKDKGISKDILIDAVEAALISSYKRNFGSSQNVRVEINRDNGEVHVYAQ 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
++ ++V + +I + A+ +P +G + P +FGR+A Q+AKQV++Q++REA
Sbjct: 62 KKITDDVIDDLLEIHIDDAKIVNPKYSVGDTFESEVTPKNFGRIAAQTAKQVVVQRIREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y EF ++ EII+G V RV GNV + LG ++ ++ E I E GDR+K Y
Sbjct: 122 ERGIVYDEFINRESEIITGEVSRVAKGNVYISLGRTEAILGPGEQIPNEVYEHGDRIKCY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I +V++ +GPQ+LLSRTHP + +LF +EVPEI++G V++K++SR+ GSRAK+AV S D
Sbjct: 182 IVEVKKTTKGPQILLSRTHPGLVKRLFELEVPEIHDGTVEIKSISREAGSRAKIAVDSKD 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
++D VGACVG +G+RVQ +V EL+ EKIDI+ +S D+ F+ ++L PA V ++ D
Sbjct: 242 PNVDAVGACVGPKGARVQTIVDELKGEKIDIIKYSEDAKEFIASSLSPAKVLLCDINNDA 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
+V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + +
Sbjct: 302 KTAKVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQINE 345
>gi|47095907|ref|ZP_00233510.1| N utilization substance protein A [Listeria monocytogenes str. 1/2a
F6854]
gi|224499904|ref|ZP_03668253.1| transcription elongation factor NusA [Listeria monocytogenes
Finland 1988]
gi|254828682|ref|ZP_05233369.1| transcription elongation factor NusA [Listeria monocytogenes FSL
N3-165]
gi|254829921|ref|ZP_05234576.1| transcription elongation factor NusA [Listeria monocytogenes
10403S]
gi|254898513|ref|ZP_05258437.1| transcription elongation factor NusA [Listeria monocytogenes J0161]
gi|254911996|ref|ZP_05262008.1| N utilization substance protein A [Listeria monocytogenes J2818]
gi|254936323|ref|ZP_05268020.1| transcription elongation factor NusA [Listeria monocytogenes F6900]
gi|284801707|ref|YP_003413572.1| transcription elongation factor NusA [Listeria monocytogenes
08-5578]
gi|284994849|ref|YP_003416617.1| transcription elongation factor NusA [Listeria monocytogenes
08-5923]
gi|47015653|gb|EAL06583.1| N utilization substance protein A [Listeria monocytogenes str. 1/2a
F6854]
gi|258601086|gb|EEW14411.1| transcription elongation factor NusA [Listeria monocytogenes FSL
N3-165]
gi|258608913|gb|EEW21521.1| transcription elongation factor NusA [Listeria monocytogenes F6900]
gi|284057269|gb|ADB68210.1| transcription elongation factor NusA [Listeria monocytogenes
08-5578]
gi|284060316|gb|ADB71255.1| transcription elongation factor NusA [Listeria monocytogenes
08-5923]
gi|293589960|gb|EFF98294.1| N utilization substance protein A [Listeria monocytogenes J2818]
gi|313623922|gb|EFR94030.1| transcription termination factor NusA [Listeria innocua FSL J1-023]
Length = 372
Score = 352 bits (904), Expect = 7e-95, Method: Composition-based stats.
Identities = 148/350 (42%), Positives = 226/350 (64%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E
Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 AVEQVFDSRLEISMEEAHKLNPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+
Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++
Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E
Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + N+
Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETVATELGIYPRND 353
>gi|323173571|gb|EFZ59200.1| transcription elongation protein nusA [Escherichia coli LT-68]
Length = 381
Score = 352 bits (904), Expect = 8e-95, Method: Composition-based stats.
Identities = 167/398 (41%), Positives = 250/398 (62%), Gaps = 19/398 (4%)
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLR 177
+QKVREAER +F++ GEII+G VK+V N+ +DLGN+ + VI R++ + REN R
Sbjct: 1 MQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFR 60
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
PGDRV+ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRA
Sbjct: 61 PGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRA 120
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V
Sbjct: 121 KIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVA 180
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
+V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + +
Sbjct: 181 SIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHA 240
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
F + +++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L
Sbjct: 241 AIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNAL 300
Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477
I ++ + + +++L ++ GID + L G+ T+EDLA +DDL
Sbjct: 301 ATIAQAQEESLGDNKPADDLLNLEGIDRDLAFKLAARGVCTLEDLAEQGIDDLADIE--- 357
Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ ++I+ AR + W E
Sbjct: 358 --------------GLTDEKAGALIMAAR-NICWFGDE 380
>gi|225390157|ref|ZP_03759881.1| hypothetical protein CLOSTASPAR_03907 [Clostridium asparagiforme
DSM 15981]
gi|225043751|gb|EEG53997.1| hypothetical protein CLOSTASPAR_03907 [Clostridium asparagiforme
DSM 15981]
Length = 393
Score = 352 bits (904), Expect = 8e-95, Method: Composition-based stats.
Identities = 156/389 (40%), Positives = 241/389 (61%), Gaps = 5/389 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
ELL+ + + EK+I ++ +L + +S+ A ++ +G ++RV INP+T D +++
Sbjct: 8 NKELLEAMEVLEKEKNISKETLLEAIENSLLTACKNHFGKADNVRVNINPDTCDFAVYME 67
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
EVVE E+ QISL A+ +P ++G V PL FGR+A Q+AK VI+QK+RE
Sbjct: 68 KEVVETPEDDQLQISLVDAKMMNPKYEVGDTVQIPLDSKKFGRIATQNAKNVILQKIREE 127
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y E+ K ++++G V+R+ NV ++LG D ++ E + E RP +RVK Y
Sbjct: 128 ERSSLYKEYYMKEKDVMTGIVQRMLGKNVSINLGRVDAILNESEQVKGETFRPTERVKVY 187
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I +V+ +GP++ +SRTHP + +LF EV E+ +G V++KA++R+ GSR+K+AV S+D
Sbjct: 188 ILEVKDTPKGPRISVSRTHPDLVKRLFESEVAEVRDGTVEIKAIAREAGSRSKIAVMSND 247
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
++DPVGACVG+ GSRV ++V ELR EKIDI+ W + A + NAL PA V VV DE+
Sbjct: 248 PNVDPVGACVGLNGSRVNSIVNELRGEKIDIINWDENPAYLIENALSPAKVICVVADEEE 307
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
+VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + ++ Q +Q
Sbjct: 308 REAQVIVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSET-----QAREMGLFEQMGLQY 362
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISE 394
+ E + E + D + A + ++
Sbjct: 363 GDAPEDTYEEEIQEDYQDYDSEAGQEDAD 391
>gi|227534931|ref|ZP_03964980.1| transcription elongation factor NusA [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
gi|227187687|gb|EEI67754.1| transcription elongation factor NusA [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
Length = 417
Score = 352 bits (903), Expect = 1e-94, Method: Composition-based stats.
Identities = 140/343 (40%), Positives = 212/343 (61%), Gaps = 2/343 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E++Q DA+ EK + ++VV+ + ++ A + Y ++ VE +P+ GDI ++ + E
Sbjct: 4 EMIQALDALEQEKGVKKEVVIEALEAALVSAYKRNYNQAQNVDVEFDPKQGDIHIYAVKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
V +EV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+VREAER
Sbjct: 64 VTDEVFDSRLEVSLKEALAINKAYEIGDQIKFEVTPKDFGRIAAQTAKQVIMQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y E+ EI+ G V+R + + V+LG + V+ R + + E DR+K Y+
Sbjct: 124 SIVYDEYSQYEDEILQGVVERRDNRFIYVNLGKIEAVLGRQDQMPNEKYEAHDRIKVYVT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +GPQV +SRTHP + +LF EVPEI++G V++ ++R+ G R K+AV S++ +
Sbjct: 184 KVENTSKGPQVFVSRTHPGLVKRLFEQEVPEIFDGTVEIVNIAREAGDRTKIAVRSTNDA 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED--V 305
+D VG VG RG+RVQAVV EL E +D+V W D A ++ NAL PA V V +++
Sbjct: 244 VDAVGTTVGPRGARVQAVVNELSGENMDVVQWEEDPADYIANALNPAQVIAVQFNDEAND 303
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
VIVP QLSLAIG++GQN RLA++LTG+ I I E E
Sbjct: 304 RSATVIVPDYQLSLAIGKKGQNARLAAKLTGYKIHIKPESEVE 346
>gi|304404290|ref|ZP_07385952.1| transcription termination factor NusA [Paenibacillus
curdlanolyticus YK9]
gi|304347268|gb|EFM13100.1| transcription termination factor NusA [Paenibacillus
curdlanolyticus YK9]
Length = 366
Score = 351 bits (902), Expect = 1e-94, Method: Composition-based stats.
Identities = 142/359 (39%), Positives = 228/359 (63%)
Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66
+E ++ + EK I +D+++ + ++ + + + T ++RV++N TG I ++
Sbjct: 3 MEFIEALQEIEREKGISKDILIDAIEAALISSYKRNFNTAQNVRVDVNRFTGVIKVYARK 62
Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
VV+EV + +I+++ AR+ +P + + + P DFGR+A Q+AKQV+ Q++REAE
Sbjct: 63 TVVDEVLDSRMEITVEAAREINPHYQLDDIADIEVTPRDFGRIAAQTAKQVVTQRIREAE 122
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
R Y F DK +I++G V+R + N+ VDLG + V+ E + + + GDRVKS+I
Sbjct: 123 RGLIYNAFIDKEEDIVNGIVQRQDTRNLFVDLGKVEAVLPLTELMPTDKFKHGDRVKSFI 182
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
V +GPQ+++SRTHP + +LF +EVPEIY+G+V++++V+R+ G R+K+AV S +
Sbjct: 183 TKVENTTKGPQIIMSRTHPGLLKRLFELEVPEIYDGVVEIRSVAREAGFRSKIAVHSRNV 242
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
+DPVG+CVG +G RVQ +V EL+ EKIDIV WS + +V NAL P+ V +V++ E
Sbjct: 243 EVDPVGSCVGPKGMRVQTIVNELKGEKIDIVRWSENIDEYVANALSPSKVLEVIVFEQEK 302
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
VIVP QLSLAIG +GQN RLA++LTGW IDI +E + + ++ + Q
Sbjct: 303 MARVIVPDYQLSLAIGIKGQNARLAAKLTGWKIDIKSETQAEQEFGRPRSDESDTMHQD 361
>gi|313893742|ref|ZP_07827309.1| transcription termination factor NusA [Veillonella sp. oral taxon
158 str. F0412]
gi|313441756|gb|EFR60181.1| transcription termination factor NusA [Veillonella sp. oral taxon
158 str. F0412]
Length = 358
Score = 351 bits (902), Expect = 1e-94, Method: Composition-based stats.
Identities = 151/354 (42%), Positives = 223/354 (62%)
Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66
EL+Q + +K +V+ + ++ +A R + D V I+ ETG +
Sbjct: 3 QELIQAVMVLTKQKGFAPEVIFESLEAALLQAYRKEPTSNPDAYVVIDRETGVYKVMAKK 62
Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
+VVE VE +ISL AR +D +IG VV + P +FGR A +AKQ++IQ+++EAE
Sbjct: 63 QVVETVELPETEISLLDARKKDKRFEIGDVVEVDVTPANFGRSAAHTAKQMLIQRLKEAE 122
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
R Y E+ + G+II+G + RVE NV +DLG ++ ++ E I+ E R GDR+K YI
Sbjct: 123 RSVVYEEYYSREGDIITGVITRVEGKNVFIDLGKTEAILPPTEQIATETYREGDRIKCYI 182
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
+V++ +GPQ+++SRTHP + +LF +EVPEI+ G+V++K+V+R+PG R+K+AV+S D
Sbjct: 183 VEVKKTTKGPQIMISRTHPGLLKRLFELEVPEIFEGVVELKSVAREPGMRSKIAVYSRDE 242
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
++DPVGACVG +G RVQ +V EL DEKIDIV W D A ++ N+L PA V V + E+
Sbjct: 243 NVDPVGACVGPKGQRVQHIVDELHDEKIDIVKWDEDPAIYIANSLSPAKVISVDVSEEEK 302
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
V+VP QLSLAIG+ GQN RLA++LT W IDI +E + + F
Sbjct: 303 SSYVVVPDYQLSLAIGKAGQNARLAAKLTNWKIDIKSETQAAEEPFTGFGNAED 356
>gi|289434603|ref|YP_003464475.1| transcription termination factor [Listeria seeligeri serovar 1/2b
str. SLCC3954]
gi|289170847|emb|CBH27389.1| transcription termination factor [Listeria seeligeri serovar 1/2b
str. SLCC3954]
gi|313638097|gb|EFS03364.1| transcription termination factor NusA [Listeria seeligeri FSL
S4-171]
Length = 372
Score = 351 bits (902), Expect = 1e-94, Method: Composition-based stats.
Identities = 149/368 (40%), Positives = 228/368 (61%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E
Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 AVEQVFDSRLEISMEEAHKINPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+
Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++S+
Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTSNEE 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E
Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + N ++
Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETVATELGIYPRNNEDAAPVEEAE 363
Query: 368 VDEIIAHL 375
+
Sbjct: 364 SETFTEDE 371
>gi|16078723|ref|NP_389542.1| transcription elongation factor NusA [Bacillus subtilis subsp.
subtilis str. 168]
gi|221309538|ref|ZP_03591385.1| transcription elongation factor NusA [Bacillus subtilis subsp.
subtilis str. 168]
gi|221313862|ref|ZP_03595667.1| transcription elongation factor NusA [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221318785|ref|ZP_03600079.1| transcription elongation factor NusA [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221323057|ref|ZP_03604351.1| transcription elongation factor NusA [Bacillus subtilis subsp.
subtilis str. SMY]
gi|321315427|ref|YP_004207714.1| transcription elongation factor NusA [Bacillus subtilis BSn5]
gi|7404400|sp|P32727|NUSA_BACSU RecName: Full=Transcription elongation protein nusA
gi|2634032|emb|CAB13533.1| transcription translation coupling factor involved in Rho-dependent
transcription termination [Bacillus subtilis subsp.
subtilis str. 168]
gi|291484215|dbj|BAI85290.1| transcription elongation factor NusA [Bacillus subtilis subsp.
natto BEST195]
gi|320021701|gb|ADV96687.1| transcription elongation factor NusA [Bacillus subtilis BSn5]
Length = 371
Score = 351 bits (902), Expect = 1e-94, Method: Composition-based stats.
Identities = 149/368 (40%), Positives = 228/368 (61%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + EK I +++++ + ++ A + + ++RV++N ETG I +F +
Sbjct: 4 ELLDALTILEKEKGISKEIIIEAIEAALISAYKRNFNQAQNVRVDLNRETGSIRVFARKD 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +IS++ A+ P +G VV + P DFGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 VVDEVYDQRLEISIEEAQGIHPEYMVGDVVEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF D+ +I++G V+R++ + V LG + ++ +E + E+ +P DR+K YI
Sbjct: 124 GVIYSEFIDREEDIMTGIVQRLDNKFIYVSLGKIEALLPVNEQMPNESYKPHDRIKVYIT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V + D
Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEIEVPEIYDGTVELKSVAREAGDRSKISVRTDDPD 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVG+CVG +G RVQA+V EL+ EKIDIV WS D FV NAL P+ V V+++E+
Sbjct: 244 VDPVGSCVGPKGQRVQAIVNELKGEKIDIVNWSSDPVEFVANALSPSKVLDVIVNEEEKA 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
VIVP QLSLAIG+RGQN RLA++LTGW IDI +E +
Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDARELGIYPRELEEDDEPLFTE 363
Query: 368 VDEIIAHL 375
+ +
Sbjct: 364 PETAESDE 371
>gi|317153847|ref|YP_004121895.1| transcription termination factor NusA [Desulfovibrio aespoeensis
Aspo-2]
gi|316944098|gb|ADU63149.1| transcription termination factor NusA [Desulfovibrio aespoeensis
Aspo-2]
Length = 466
Score = 351 bits (902), Expect = 1e-94, Method: Composition-based stats.
Identities = 171/403 (42%), Positives = 265/403 (65%), Gaps = 5/403 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
EL + D ++ ++ IDRD+++ + ++++ A +G DI V N ++G+I +F
Sbjct: 3 ELKKAIDQISKDRGIDRDLLIDTLEEAVRSAVARKHGETMDIEVAFNEDSGEIEVFEFKV 62
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV EV + +ISL+ AR+ DP+ + + P+ D GR+A QSAKQVIIQ++R+AE+
Sbjct: 63 VVAEVHDPISEISLENAREHDPNAQLDDEMGFPVRIEDLGRIAAQSAKQVIIQRMRDAEQ 122
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ + E+KD++GEI SG V+R + I++LG ++ ++ +DE I RE + GDRV++YI
Sbjct: 123 EIIFEEYKDRLGEITSGIVQRRDRTGWIINLGRTEALLPKDEQIPRERYKRGDRVQAYII 182
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
DV +E RGPQV++SR+HP +M++LF EVPE+ +G V++ V+RDPG RAK+AV S D
Sbjct: 183 DVLKESRGPQVVVSRSHPDYMIELFKREVPEVADGTVKIMGVARDPGLRAKVAVMSRDRD 242
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVGACVG+RGSR+Q VV E++ E+IDIVVWSPD A + +AL PA++T++ +D++
Sbjct: 243 VDPVGACVGIRGSRIQNVVQEMKGERIDIVVWSPDIAMYAQHALSPAVITRITVDDEEEA 302
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
+EV+ P +QL+LAIGR+GQNV+LA++L GW IDI TE R + N + Q +
Sbjct: 303 LEVVCPDDQLTLAIGRKGQNVKLAAKLLGWKIDIFTES-----RYGELNASRKGMDQVAS 357
Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410
V EI GF +E + E+ +I G + +I+
Sbjct: 358 VAEIPMESFFNAGFESLESIVRATNEELLAINGLTKSKIGDIR 400
>gi|269797844|ref|YP_003311744.1| NusA antitermination factor [Veillonella parvula DSM 2008]
gi|269094473|gb|ACZ24464.1| NusA antitermination factor [Veillonella parvula DSM 2008]
Length = 358
Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats.
Identities = 151/354 (42%), Positives = 222/354 (62%)
Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66
EL+Q + +K +V+ + ++ +A R + D V I+ ETG +
Sbjct: 3 QELIQAVMVLTKQKGFAPEVIFESLEAALLQAYRKEPTSNPDAYVVIDRETGVYKVMAKK 62
Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
+VVE VE +ISL AR +D +IG VV + P +FGR A +AKQ++IQ+++EAE
Sbjct: 63 QVVETVELPETEISLLDARKKDKRFEIGDVVEVDVTPANFGRSAAHTAKQMLIQRLKEAE 122
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
R Y E+ + G+II+G + RVE NV ++LG ++ ++ E I E R GDR+K YI
Sbjct: 123 RSVVYEEYYSREGDIITGVITRVEGKNVFINLGKTEAILPPTEQIVTETYREGDRIKCYI 182
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
+V++ +GPQ+++SRTHP + +LF +EVPEI+ G+V++K+V+R+PG R+K+AV+S D
Sbjct: 183 VEVKKTTKGPQIMISRTHPGLLKRLFELEVPEIFEGVVELKSVAREPGMRSKIAVYSRDE 242
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
+IDPVGACVG +G RVQ +V EL DEKIDIV W D A ++ N+L PA V V + E+
Sbjct: 243 NIDPVGACVGPKGQRVQHIVDELHDEKIDIVKWDEDPAIYIANSLSPAKVVSVDVSEEEK 302
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
V+VP QLSLAIG+ GQN RLA++LT W IDI +E + + F
Sbjct: 303 SSYVVVPDYQLSLAIGKAGQNARLAAKLTNWKIDIKSETQAAEEPFTGFGNAED 356
>gi|222151100|ref|YP_002560254.1| transcription termination-antitermination factor [Macrococcus
caseolyticus JCSC5402]
gi|222120223|dbj|BAH17558.1| transcription termination-antitermination factor [Macrococcus
caseolyticus JCSC5402]
Length = 353
Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats.
Identities = 152/344 (44%), Positives = 226/344 (65%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
ELL D + EKSI R+V++ + ++ A + Y + +++RVE+N + G ++
Sbjct: 3 NNELLNAIDFLEKEKSIPREVLIETIEAALITAYKKNYNSANNVRVELNMDNGAYRVYSR 62
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVEEV N ++SL+ A +P+ +IG + + + P DFGRV+ Q+AKQ ++Q++R+A
Sbjct: 63 KNVVEEVMNSREEVSLETALLSNPAYEIGDIYEEDVTPKDFGRVSAQAAKQAVLQRLRDA 122
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y EF DK +I++G + RV++ V V LG ++ V+ E E RP +R+K Y
Sbjct: 123 ERGILYNEFIDKEDDIMTGIIDRVDHRYVYVTLGKTEAVLSEAERSPNEVYRPTERIKVY 182
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ V + +GPQ+ +SR+HP + +LF EVPEI++G V VK+V+R+ G R+K++V+S +
Sbjct: 183 VNKVEQTTKGPQIFVSRSHPGLLKRLFEQEVPEIFDGTVVVKSVAREAGDRSKISVYSDN 242
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
ID VGACVG +G+RV+AVV EL EKIDIV WS D+ TFV NAL P+ V V++DE
Sbjct: 243 PDIDAVGACVGAKGARVEAVVEELGGEKIDIVEWSADTKTFVKNALSPSQVVDVLVDEAN 302
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
VIVP QLSLAIG++GQN RLA++LTGW IDI +E +
Sbjct: 303 QSTTVIVPDYQLSLAIGKKGQNARLAAKLTGWKIDIKSETDAKE 346
>gi|257875536|ref|ZP_05655189.1| transcription termination factor NusA [Enterococcus casseliflavus
EC20]
gi|257809702|gb|EEV38522.1| transcription termination factor NusA [Enterococcus casseliflavus
EC20]
Length = 404
Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats.
Identities = 153/398 (38%), Positives = 236/398 (59%), Gaps = 7/398 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L DA+ EK I +++V+ + ++ A + YG ++ VE + + G+I ++ + E
Sbjct: 4 EMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQKKGNIHVYAVKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
V EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREAER
Sbjct: 64 VTEEVMDSQLEVSLKEAMTINPAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K ++
Sbjct: 124 NIIYNEFSAYEKDILQGIVERQDNRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVFVS 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +GPQV +SR+HP + +LF EVPE+Y+G V++ +++R+ G RAK+AV S D++
Sbjct: 184 RVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGTVEIVSIAREAGDRAKVAVRSFDAN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV-G 306
+DPVG CVG +G RVQA+V EL+ E +DIV W+ DSA F+ NAL PA V+ V+ D D
Sbjct: 244 VDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDSAIFIANALNPAEVSDVIFDVDNPK 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
V+VP QLSLAIG+RGQN RLA++LTG+ IDI +E + K A
Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTGFKIDIKSETDMEEFYAKLDEGDYIDEYDAT 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404
+ E + E A I S + ++
Sbjct: 364 ASEA------AEESSTEATESAETVDEAILSSDMTADD 395
>gi|254556874|ref|YP_003063291.1| transcription elongation factor NusA [Lactobacillus plantarum JDM1]
gi|300768187|ref|ZP_07078092.1| transcription termination factor NusA [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
gi|308180815|ref|YP_003924943.1| transcription elongation factor NusA [Lactobacillus plantarum
subsp. plantarum ST-III]
gi|254045801|gb|ACT62594.1| transcription elongation factor NusA [Lactobacillus plantarum JDM1]
gi|300494251|gb|EFK29414.1| transcription termination factor NusA [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
gi|308046306|gb|ADN98849.1| transcription elongation factor NusA [Lactobacillus plantarum
subsp. plantarum ST-III]
Length = 405
Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats.
Identities = 145/365 (39%), Positives = 222/365 (60%), Gaps = 1/365 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL D + EK I ++VV+ + ++ A + YG ++ V+ + G+I ++ + E
Sbjct: 4 ELLGALDTLESEKGIKKEVVIEALEAALVSAYKRNYGQAQNVEVDFDQIKGNIHVYAVKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVE+V + ++SL+ A + + +IG + + P +FGR+A Q+AKQVI+Q+VREAER
Sbjct: 64 VVEDVFDSRLEVSLQDALAINRAYEIGDDIRFEVTPKNFGRIAAQTAKQVIMQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y E+ EI++G V+R + V V LG + V+ R + + E R D++K Y+
Sbjct: 124 GIIYDEYSQYENEIVTGEVERQDNRFVYVSLGKVEAVMGRSDQLPGEVYRIHDKIKVYVS 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +GPQV +SRT P + +LF EVPEI++GIV++ +++R+ G RAK+AV S++ +
Sbjct: 184 KVENATKGPQVFVSRTAPDLLKRLFEQEVPEIFDGIVEIVSIAREAGDRAKVAVRSNNPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVG CVG +G RVQ +V EL E +DIV W+ D A F+ NAL PA V V+ D + R
Sbjct: 244 VDPVGTCVGPKGQRVQTIVNELHGENMDIVEWTDDQAVFIANALNPAEVLDVIFDPENER 303
Query: 308 -IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
V+VP QLSLAIG+RGQN RLA++LTG+ IDI +E E S + ++ +
Sbjct: 304 GCTVVVPDYQLSLAIGKRGQNARLAAKLTGFKIDIKSETEASDIMDANPDDVAVAETETT 363
Query: 367 NVDEI 371
Sbjct: 364 EAASD 368
>gi|313633405|gb|EFS00241.1| transcription termination factor NusA [Listeria seeligeri FSL
N1-067]
Length = 372
Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats.
Identities = 148/368 (40%), Positives = 228/368 (61%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E
Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 AVEQVFDSRLEISMEEAHKINPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+
Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++
Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E
Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + N ++
Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETVATELGIYPRNNEDAAPVEEAE 363
Query: 368 VDEIIAHL 375
+
Sbjct: 364 SETFTEDE 371
>gi|28378676|ref|NP_785568.1| transcription elongation factor NusA [Lactobacillus plantarum
WCFS1]
gi|28271512|emb|CAD64417.1| transcription termination-antitermination factor NusA
[Lactobacillus plantarum WCFS1]
Length = 405
Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats.
Identities = 145/351 (41%), Positives = 221/351 (62%), Gaps = 1/351 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL D + EK I ++VV+ + ++ A + YG ++ V+ + G+I ++ + E
Sbjct: 4 ELLGALDTLESEKGIKKEVVIEALEAALVSAYKRNYGQAQNVEVDFDQIKGNIHVYAVKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVE+V + ++SL+ A + + +IG + + P +FGR+A Q+AKQVI+Q+VREAER
Sbjct: 64 VVEDVFDSRLEVSLQDALAINRAYEIGDDIRFEVTPKNFGRIAAQTAKQVIMQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y E+ EI++G V+R + V V LG + V+ R + + E R D++K Y+
Sbjct: 124 GIIYDEYSQYENEIVTGEVERQDNRFVYVSLGKVEAVMGRSDQLPGEVYRIHDKIKVYVS 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +GPQV +SRT P + +LF EVPEI++GIV++ +++R+ G RAK+AV S++ +
Sbjct: 184 KVENATKGPQVFVSRTAPDLLKRLFEQEVPEIFDGIVEIVSIAREAGDRAKVAVRSNNPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVG CVG +G RVQ +V EL E +DIV W+ D A F+ NAL PA V V+ D + R
Sbjct: 244 VDPVGTCVGPKGQRVQTIVNELHGENMDIVEWTYDQAVFIANALNPAEVLDVIFDPENER 303
Query: 308 -IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
V+VP QLSLAIG+RGQN RLA++LTG+ IDI +E E S + ++
Sbjct: 304 GCTVVVPDYQLSLAIGKRGQNARLAAKLTGFKIDIKSETEASDIMDANPDD 354
>gi|282848827|ref|ZP_06258220.1| transcription termination factor NusA [Veillonella parvula ATCC
17745]
gi|294791739|ref|ZP_06756887.1| transcription termination factor NusA [Veillonella sp. 6_1_27]
gi|294793600|ref|ZP_06758737.1| transcription termination factor NusA [Veillonella sp. 3_1_44]
gi|282581481|gb|EFB86871.1| transcription termination factor NusA [Veillonella parvula ATCC
17745]
gi|294455170|gb|EFG23542.1| transcription termination factor NusA [Veillonella sp. 3_1_44]
gi|294456969|gb|EFG25331.1| transcription termination factor NusA [Veillonella sp. 6_1_27]
Length = 358
Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats.
Identities = 152/354 (42%), Positives = 223/354 (62%)
Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66
EL+Q + +K +V+ + ++ +A R + D V I+ ETG +
Sbjct: 3 QELIQAVMVLTKQKGFAPEVIFESLEAALLQAYRKEPTSNPDAYVVIDRETGVYKVMAKK 62
Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
+VVE VE +ISL AR +D +IG VV + P +FGR A +AKQ++IQ+++EAE
Sbjct: 63 QVVETVELPETEISLLDARKKDKRFEIGDVVEVDVTPANFGRSAAHTAKQMLIQRLKEAE 122
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
R Y E+ + G+II+G + RVE NV +DLG ++ ++ E I+ E R GDR+K YI
Sbjct: 123 RSVVYEEYYSREGDIITGVITRVEGKNVFIDLGKTEAILPPTEQIATETYREGDRIKCYI 182
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
+V++ +GPQ+++SRTHP + +LF +EVPEI+ G+V++K+V+R+PG R+K+AV+S D
Sbjct: 183 VEVKKTTKGPQIMISRTHPGLLKRLFELEVPEIFEGVVELKSVAREPGMRSKIAVYSRDE 242
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
+IDPVGACVG +G RVQ +V EL DEKIDIV W D A ++ N+L PA V V + E+
Sbjct: 243 NIDPVGACVGPKGQRVQHIVDELHDEKIDIVKWDEDPAIYIANSLSPAKVVSVDVSEEEK 302
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
V+VP QLSLAIG+ GQN RLA++LT W IDI +E + + F
Sbjct: 303 ASYVVVPDYQLSLAIGKAGQNARLAAKLTNWKIDIKSETQAAEEPFTGFGNAED 356
>gi|239626256|ref|ZP_04669287.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239520486|gb|EEQ60352.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 401
Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats.
Identities = 152/389 (39%), Positives = 233/389 (59%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
ELL+ + + EK+I +D ++ + +S+ A ++ +G +++V +NP T D +++
Sbjct: 8 NKELLEAMEVLEKEKNIAKDTLIEAIENSLLTACKNHFGKADNVKVTVNPNTCDFAVYAE 67
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVE+VE+ +ISL A+ P D+G V PL FGR+A Q+AK VI+QK+RE
Sbjct: 68 KTVVEQVEDDIMEISLADAKMLSPKYDLGDTVQIPLDSKKFGRIATQNAKNVILQKIREE 127
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y E+ K ++++G V+R NV ++LG D ++ E + E RP +R+K Y
Sbjct: 128 ERKVLYNEYYTKEKDVMTGIVQRYLGRNVSINLGRVDAILNESEQVKGETFRPTERIKVY 187
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ +V+ +GP+V +SRTHP + +LF EV E+ +G V++KA++R+ GSR K+AV S+D
Sbjct: 188 VLEVKDTPKGPRVSVSRTHPDLVKRLFESEVAEVRDGTVEIKAIAREAGSRTKIAVKSND 247
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
S++DPVGACVG+ G+RV A+V+ELR EKIDI+ W + A + NAL PA V VV DE+
Sbjct: 248 SNVDPVGACVGLNGARVNAIVSELRGEKIDIINWDDNPAYLIENALSPAKVICVVADEEE 307
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
+VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + + A
Sbjct: 308 REAQVIVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSETQAREMGLFEQMGLQYGDAPA 367
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISE 394
+ +E E + E +
Sbjct: 368 PSFEEDSFEEDSLEETENYPEYEEGYQED 396
>gi|323697469|ref|ZP_08109381.1| transcription termination factor NusA [Desulfovibrio sp. ND132]
gi|323457401|gb|EGB13266.1| transcription termination factor NusA [Desulfovibrio desulfuricans
ND132]
Length = 459
Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats.
Identities = 175/425 (41%), Positives = 269/425 (63%), Gaps = 5/425 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
EL + D ++ ++ IDRD+++ + ++++ A YG DI V N E G+I +F
Sbjct: 3 ELKRAIDQISKDRGIDRDLLIDTLEEAVRSAVARKYGETMDIEVAFNEERGEIEVFEFKV 62
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISL+ AR DP+ + + P+ D GR+A QSAKQVIIQ++R+AE+
Sbjct: 63 VVDEVHDPISEISLEDARTHDPNAQLDDEMGFPVKVEDLGRIAAQSAKQVIIQRMRDAEQ 122
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y E+KD+V EI SG ++R + I++LG ++ ++ ++E I RE + GDRV++YI
Sbjct: 123 EIIYEEYKDRVSEIASGIIQRRDRTGWIINLGRTEALLPKEEQIPRERYKRGDRVQAYII 182
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
DV +E RGPQV++SR+HP +MV+LF EVPE+ +G V++ V+RDPG RAK+AV S D
Sbjct: 183 DVLKESRGPQVIVSRSHPDYMVELFKREVPEVADGTVKIMGVARDPGLRAKVAVMSRDRD 242
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVGACVG+RGSR+Q VV EL+ E+IDIVVWSPD A + +AL PA++T++ +D++
Sbjct: 243 VDPVGACVGIRGSRIQNVVQELKGERIDIVVWSPDIAMYAQHALSPAVITRITVDDEEEA 302
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
+EV+ P +QL+LAIGR+GQNV+LA++L GW IDI TE R + N + Q +
Sbjct: 303 LEVVCPDDQLTLAIGRKGQNVKLAAKLLGWKIDIFTES-----RYGELNAARKGMDQIAS 357
Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427
V E+ + GF +E + E+ +I+G E +++ ++ T
Sbjct: 358 VAEVPMENFFSAGFESIESIVQASDEELLAIKGMTESKIGDMRLAINMLAPDLEATAPAD 417
Query: 428 IRELG 432
E
Sbjct: 418 AHEAE 422
>gi|116495058|ref|YP_806792.1| transcription elongation factor NusA [Lactobacillus casei ATCC 334]
gi|191638561|ref|YP_001987727.1| transcription elongation factor NusA [Lactobacillus casei BL23]
gi|239631347|ref|ZP_04674378.1| transcription elongation factor NusA [Lactobacillus paracasei
subsp. paracasei 8700:2]
gi|301066621|ref|YP_003788644.1| transcription elongation factor [Lactobacillus casei str. Zhang]
gi|116105208|gb|ABJ70350.1| Transcription elongation factor [Lactobacillus casei ATCC 334]
gi|190712863|emb|CAQ66869.1| Transcription elongation protein NusA (Transcription
termination-antitermination factor NusA) [Lactobacillus
casei BL23]
gi|239525812|gb|EEQ64813.1| transcription elongation factor NusA [Lactobacillus paracasei
subsp. paracasei 8700:2]
gi|300439028|gb|ADK18794.1| Transcription elongation factor [Lactobacillus casei str. Zhang]
gi|327382599|gb|AEA54075.1| N utilization substance protein A [Lactobacillus casei LC2W]
gi|327385797|gb|AEA57271.1| N utilization substance protein A [Lactobacillus casei BD-II]
Length = 417
Score = 350 bits (899), Expect = 3e-94, Method: Composition-based stats.
Identities = 141/343 (41%), Positives = 213/343 (62%), Gaps = 2/343 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E++Q DA+ EK + ++VV+ + ++ A + Y ++ VE +P+ GDI ++ + E
Sbjct: 4 EMIQALDALEQEKGVKKEVVIEALEAALVSAYKRNYNQAQNVDVEFDPKQGDIHIYAVKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
V +EV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+VREAER
Sbjct: 64 VTDEVFDSRLEVSLKEALAINKAYEIGDQIKFEVTPKDFGRIAAQTAKQVIMQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y E+ EI+ G V+R + + V+LG + V+ R + + E DR+K Y+
Sbjct: 124 SIVYDEYSQYEDEILQGVVERRDNRFIYVNLGKIEAVLGRQDQMPNEKYEAHDRIKVYVT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +GPQV +SRTHP + +LF EVPEI++G V++ ++R+ G R K+AV S++ +
Sbjct: 184 KVENTSKGPQVFVSRTHPGLVKRLFEQEVPEIFDGTVEIVNIAREAGDRTKIAVRSTNDA 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED--V 305
+D VG VG RG+RVQAVV EL E +D+V W D A ++ NAL PA V V +++
Sbjct: 244 VDAVGTTVGPRGARVQAVVNELSGENMDVVQWEEDPADYIANALNPAQVIAVQFNDEAND 303
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
VIVP QLSLAIG++GQN RLA++LTG+ IDI E E
Sbjct: 304 RSATVIVPDYQLSLAIGKKGQNARLAAKLTGYKIDIKPESEVE 346
>gi|303240818|ref|ZP_07327331.1| transcription termination factor NusA [Acetivibrio cellulolyticus
CD2]
gi|302591706|gb|EFL61441.1| transcription termination factor NusA [Acetivibrio cellulolyticus
CD2]
Length = 371
Score = 350 bits (898), Expect = 3e-94, Method: Composition-based stats.
Identities = 147/368 (39%), Positives = 237/368 (64%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
+L+ + + EK I++D+++ + ++ A + +G+ ++RV ++ +TGD ++ L
Sbjct: 4 DLIHALEQLEKEKGIEKDIIIEAIEAALISAYKRNFGSSQNVRVSVDRQTGDFKVYALKR 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
V + +N IS++ A+ + +D + + P FGR+A Q+AKQV++Q++REAER
Sbjct: 64 VTSDPQNEYMDISVENAKKINAELDEEDMAEVEVTPKKFGRIAAQTAKQVVVQRLREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ EF +K EI++G V+R E NVI+DLG ++ V+ E IS E + DR+K Y+
Sbjct: 124 GIIFDEFSNKEAEIVTGIVQRTEKKNVIIDLGKTEAVLAPTEQISGEEYKFNDRIKVYVI 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
+V+R +GPQ+++SRTHP + +LF +EVPEI+ G+V++K++SR+PGSR K+AV+S D +
Sbjct: 184 EVKRTTKGPQIMVSRTHPGLIKRLFELEVPEIHEGVVEIKSISREPGSRTKIAVYSKDDN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVGACVG +G+RVQ +V ELR EKIDI+ WS + ++ ++L PA V +V + E+
Sbjct: 244 VDPVGACVGQKGTRVQTIVDELRGEKIDIIKWSSNPQEYISSSLSPAKVVRVDISEEEKS 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
+V VP QLSLAIG+ GQN RLA++LTGW IDI +E + ++ F A +
Sbjct: 304 AKVTVPDFQLSLAIGKEGQNARLAAKLTGWKIDIKSESQLRATIEQQLLNFDGGFQSAFS 363
Query: 368 VDEIIAHL 375
DE
Sbjct: 364 EDEPDEDE 371
>gi|16800427|ref|NP_470695.1| transcription elongation factor NusA [Listeria innocua Clip11262]
gi|16413832|emb|CAC96590.1| nusA [Listeria innocua Clip11262]
Length = 372
Score = 350 bits (898), Expect = 3e-94, Method: Composition-based stats.
Identities = 148/368 (40%), Positives = 229/368 (62%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E
Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 AVEQVFDSRLEISMEEAHKLNPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+
Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++
Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E
Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + N+ ++
Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETVATELGIYPRNDVEAPVVEEAE 363
Query: 368 VDEIIAHL 375
+
Sbjct: 364 SETFTEDE 371
>gi|317484449|ref|ZP_07943362.1| transcription termination factor NusA [Bilophila wadsworthia 3_1_6]
gi|316924309|gb|EFV45482.1| transcription termination factor NusA [Bilophila wadsworthia 3_1_6]
Length = 434
Score = 350 bits (898), Expect = 4e-94, Method: Composition-based stats.
Identities = 169/407 (41%), Positives = 267/407 (65%), Gaps = 5/407 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
LEL + D ++ +K +DRD+++ + D+++ + YG D+ V N +TG+I + +
Sbjct: 2 NLELKKAIDQISKDKGLDRDMLVDTLEDAVRTSVIRKYGENIDVEVSYNDDTGEIQVHQF 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV++V + +I ++ AR+ DPS+ + + PL D GR+A QSAKQVIIQ++R+A
Sbjct: 62 KIVVDDVADPDTEIDIEKARELDPSVQLDDEIGFPLKVTDLGRIAAQSAKQVIIQRMRDA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
E++ Y EFKD+VGEI SG ++R + G I++LG ++ ++ ++E I RE+ + GDRV++
Sbjct: 122 EQELIYEEFKDRVGEICSGIIQRRDKGGWIINLGRTEAILPKEEQIPREHYKRGDRVQAL 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I +V++E RGPQ+++SR+H + LF EVPE+ +G VQ+ V+RDPGSRAK+AV S +
Sbjct: 182 IIEVKKEGRGPQIVISRSHRDYTAALFRREVPEVDDGTVQIMGVARDPGSRAKVAVLSRE 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DPVGACVG+RGSR+Q +V EL E+IDIVVWSP+ +T+ NAL PA+++++V+DE
Sbjct: 242 RDVDPVGACVGVRGSRIQNIVQELHGERIDIVVWSPEISTYARNALAPAVISRIVVDEAE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
+EV VP +QL+ AIGR+GQNV+LA++L GW IDI TE R + N + Q
Sbjct: 302 NLLEVTVPDDQLTSAIGRKGQNVKLAAKLLGWKIDIFTET-----RYNETNAIGRGLEQV 356
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412
+V E+ LV+ GF +E+L E++ + +++
Sbjct: 357 ASVAEVSVDSLVSAGFTTLEQLQDATDEELSEKLSLSDSRIGDLRAA 403
>gi|226313023|ref|YP_002772917.1| transcription elongation factor NusA [Brevibacillus brevis NBRC
100599]
gi|226095971|dbj|BAH44413.1| transcription elongation protein NusA [Brevibacillus brevis NBRC
100599]
Length = 363
Score = 350 bits (898), Expect = 4e-94, Method: Composition-based stats.
Identities = 147/352 (41%), Positives = 230/352 (65%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+ ++ +A+ EK I +DV++ + ++ + + + ++RV++N +G + ++
Sbjct: 2 NGDFIEALEAIEREKGITKDVLIEAIEAALISGYKRNFNSAQNVRVDVNRHSGMVRVYAR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVEEV + +IS + A++ DP+ + +V + P DFGR+A Q+AKQV+ Q++REA
Sbjct: 62 KSVVEEVLDPRLEISQEAAQEIDPNFRLEDIVEIEVTPRDFGRIAAQTAKQVVTQRIREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y EF ++ +I++G V+R++ N +DLG ++ V+ E + E+ + DRVK+Y
Sbjct: 122 ERGLIYSEFIEREDDIVTGVVQRMDARNYYIDLGKAEAVMPITEKMPSEDFKSQDRVKAY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I V + +GPQ+++SRTHP + +LF +EVPEIY+G+V++K+V+R+ G R+K+AV S +
Sbjct: 182 IIKVEKTTKGPQIVVSRTHPGLLKRLFELEVPEIYDGVVEIKSVAREAGDRSKIAVHSIN 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+ +DPVGACVG +G RVQ +VTEL+ EKIDIV WS D A +V NAL PA V V ++
Sbjct: 242 ADVDPVGACVGPKGMRVQTIVTELKGEKIDIVRWSEDPAEYVANALSPAKVLHVEVNVAE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + E
Sbjct: 302 KVTRVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESQADQEGIAYPKE 353
>gi|238924307|ref|YP_002937823.1| transcription elongation factor NusA [Eubacterium rectale ATCC
33656]
gi|238875982|gb|ACR75689.1| transcription elongation factor NusA [Eubacterium rectale ATCC
33656]
gi|291525077|emb|CBK90664.1| transcription termination factor NusA [Eubacterium rectale DSM
17629]
gi|291529172|emb|CBK94758.1| transcription termination factor NusA [Eubacterium rectale M104/1]
Length = 414
Score = 350 bits (897), Expect = 4e-94, Method: Composition-based stats.
Identities = 154/413 (37%), Positives = 241/413 (58%), Gaps = 2/413 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL+ + + EK+I ++ +L + +S+ A ++ +G +++VEI+PET S ++
Sbjct: 4 ELLEALNILEQEKNISKETLLEAIENSLVTACKNHFGKSDNVKVEIDPETCAFSCYQEKT 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+ VE+ +ISL A + + +G +V + +FGR+A Q+AK VI+QK+RE ER
Sbjct: 64 VVDTVEDPVEEISLADAHKVNGNYQLGDIVRVEVKSKEFGRIATQNAKNVILQKIREEER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ E+ K ++++G V+R NV ++LG +D ++ E I E +P +R+K YI
Sbjct: 124 KVIFDEYNSKEKDVVTGVVQRYIGKNVSINLGKADALLTESEQIKGEVFKPTERIKVYIL 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
+V+ +GP++L+SRTHP+ + +LF EV E+ GIV++KA+SR+ GSR K+AV+S+D +
Sbjct: 184 EVKSTSKGPKILVSRTHPELVKRLFESEVTEVKEGIVEIKAISREAGSRTKIAVWSNDPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVGACVGM G+RV A+V ELR EKIDI+ W + A + NAL PA V V+ D D
Sbjct: 244 VDPVGACVGMNGARVNAIVNELRGEKIDIITWDENPAILIQNALSPAKVISVIADADEKS 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
+V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + + E +
Sbjct: 304 AKVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSETQARESGDFMDYENDYEEDDYDD 363
Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
+ L E A V+ DE A + A + +
Sbjct: 364 DYDYSDDELAENERLADTEQADVQAEAFD--TEADENEAAGTENDAADSGDEQ 414
>gi|217964531|ref|YP_002350209.1| transcription termination factor NusA [Listeria monocytogenes
HCC23]
gi|290893567|ref|ZP_06556550.1| N utilization substance protein A [Listeria monocytogenes FSL
J2-071]
gi|217333801|gb|ACK39595.1| transcription termination factor NusA [Listeria monocytogenes
HCC23]
gi|290556912|gb|EFD90443.1| N utilization substance protein A [Listeria monocytogenes FSL
J2-071]
gi|307570903|emb|CAR84082.1| transcription termination factor [Listeria monocytogenes L99]
gi|313619131|gb|EFR90921.1| transcription termination factor NusA [Listeria innocua FSL S4-378]
Length = 372
Score = 350 bits (897), Expect = 5e-94, Method: Composition-based stats.
Identities = 148/368 (40%), Positives = 229/368 (62%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E
Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 AVEQVFDSRLEISMEEAHKLNPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+
Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++
Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E
Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + N+ ++
Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETVATELGIYPRNDVEAPEVEDAE 363
Query: 368 VDEIIAHL 375
+
Sbjct: 364 SETFTEDE 371
>gi|160940464|ref|ZP_02087809.1| hypothetical protein CLOBOL_05354 [Clostridium bolteae ATCC
BAA-613]
gi|158437044|gb|EDP14811.1| hypothetical protein CLOBOL_05354 [Clostridium bolteae ATCC
BAA-613]
Length = 394
Score = 350 bits (897), Expect = 5e-94, Method: Composition-based stats.
Identities = 146/358 (40%), Positives = 225/358 (62%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
ELL+ + + EK+I +D ++ + +S+ A ++ +G +++V +NP T D +++
Sbjct: 8 NKELLEAMEVLEKEKNISKDTLIEAIENSLLTACKNHFGKADNVKVTVNPNTCDFAVYAE 67
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVE VE+ ++SL A+ +P +IG V PL FGR+A Q+AK VI+QK+RE
Sbjct: 68 KAVVENVEDDCLEMSLADAKMLNPKYEIGDTVQIPLDSKKFGRIATQNAKNVILQKIREE 127
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y E+ K ++++G V+R NV ++LG D ++ E + E RP +RVK Y
Sbjct: 128 ERKALYNEYYMKEKDVMTGVVQRYLGRNVSINLGRVDAILNESEQVKGETFRPTERVKVY 187
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ +V+ +GP+V +SRTHP + +LF EV E+ +G V++KA++R+ GSR K+AV S+D
Sbjct: 188 VIEVKDTPKGPRVSVSRTHPDLVKRLFESEVAEVRDGTVEIKAIAREAGSRTKIAVKSND 247
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+++DPVGACVG+ GSRV ++V+EL+ EKIDI+ W + A + NAL PA V VV DE+
Sbjct: 248 ANVDPVGACVGLNGSRVNSIVSELKGEKIDIINWDDNPAYLIENALSPAKVICVVADEEE 307
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
+VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + +
Sbjct: 308 REAQVIVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSETQAREMGLFEQMGLQYGDT 365
>gi|148263956|ref|YP_001230662.1| transcription elongation factor NusA [Geobacter uraniireducens Rf4]
gi|146397456|gb|ABQ26089.1| NusA antitermination factor [Geobacter uraniireducens Rf4]
Length = 383
Score = 350 bits (897), Expect = 5e-94, Method: Composition-based stats.
Identities = 176/353 (49%), Positives = 239/353 (67%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
L D + EK ID+DVVL + ++ AA + D+ NPE G++ LF
Sbjct: 4 NFNLKHTIDQIVKEKGIDKDVVLEALEQAVLTAANKKFRNTRDLEAHYNPEIGEVELFEF 63
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+ VVEEV++ +I L AR+ DP +++G + + F R+A Q+AKQVIIQKVREA
Sbjct: 64 VTVVEEVQDSYKEIDLDEAREIDPDVEVGDSLGMKMDASGFSRIAAQTAKQVIIQKVREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER+ + EF+++ GE+I+G V+R E G+++VDLG ++ ++ E RE R GDRVK+
Sbjct: 124 ERETIFNEFQERHGEVINGVVRRFEKGDLVVDLGRAEALLPHKEQAPREVYRQGDRVKAL 183
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I ++R +GPQ+LLSRTHP + KLF EVPEI GIV++K+V R+PGSRAK+AV+S D
Sbjct: 184 ITEIRMTTKGPQILLSRTHPMMLAKLFEAEVPEIAEGIVEIKSVVREPGSRAKIAVYSHD 243
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
S +DPVGACVGMRGSRVQ VV+ELR EKIDI+ WS D A F NAL PA+V+KV +DED
Sbjct: 244 SDVDPVGACVGMRGSRVQNVVSELRGEKIDIIPWSEDVARFACNALAPAVVSKVYVDEDN 303
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
+E++V +QLSLAIG+RGQNVRLA++LTGW IDI +E + F
Sbjct: 304 RSMEIVVADDQLSLAIGKRGQNVRLAAKLTGWRIDIKSETRVAEAELLQFASF 356
>gi|78358201|ref|YP_389650.1| transcription elongation factor NusA [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
gi|78220606|gb|ABB39955.1| NusA antitermination factor [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
Length = 429
Score = 350 bits (897), Expect = 5e-94, Method: Composition-based stats.
Identities = 178/406 (43%), Positives = 270/406 (66%), Gaps = 5/406 (1%)
Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66
+EL + D ++ ++ +DR +++ + ++++ + YG D+ V N ETG+I +++
Sbjct: 3 MELKKAIDQISKDRGLDRALLIETLEEAVRTSVIRKYGDELDLEVNFNEETGEIEVYQFK 62
Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
V EEVE+ QISL+ AR DPS+ + + L D GR+A QSAKQVIIQ++R+AE
Sbjct: 63 IVTEEVEDEASQISLEDARAHDPSVQLDDEMGFRLKIEDLGRIAAQSAKQVIIQRMRDAE 122
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
++ Y EFKD++ E+ SG ++R + I++LG ++ ++ +DE I RE+ + GDRV++ I
Sbjct: 123 QEIIYEEFKDRLNEVASGIIQRRDKTGWIINLGRTEALLPKDEQIPREHYKRGDRVQAII 182
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
+VR+E RGPQV++SR+HP +M LF EVPE+ + VQV V+RDPGSRAK+AV S D
Sbjct: 183 IEVRKEGRGPQVVVSRSHPDYMAALFKREVPEVDDETVQVMGVARDPGSRAKVAVTSRDR 242
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
+DPVGACVG+RGSR+Q +V ELR E+IDIVVWSPD AT+ NAL PA+++++++DE+
Sbjct: 243 DVDPVGACVGIRGSRIQNIVQELRGERIDIVVWSPDIATYARNALSPAVISRIIVDEEEN 302
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+EV+VP +QL+ AIGR+GQNV+LAS+L GW IDI TE R + N + Q
Sbjct: 303 MLEVVVPDDQLTNAIGRKGQNVKLASKLLGWKIDIYTET-----RYNEANAIGRGLEQLA 357
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412
+V E+ VA GF+ +EEL E+ ++EG +++
Sbjct: 358 SVAEVPIEQFVAAGFSSIEELRDATDEELMAVEGLTPGKISDLRAA 403
>gi|116872753|ref|YP_849534.1| transcription elongation factor NusA [Listeria welshimeri serovar
6b str. SLCC5334]
gi|116741631|emb|CAK20755.1| N utilization substance protein A, transcription factor [Listeria
welshimeri serovar 6b str. SLCC5334]
Length = 372
Score = 349 bits (896), Expect = 6e-94, Method: Composition-based stats.
Identities = 148/368 (40%), Positives = 229/368 (62%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E
Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 AVEQVFDSRLEISMEEAHKINPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+
Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++
Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E
Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + N ++
Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETVATELGIYPRNGIEAPEVEEAE 363
Query: 368 VDEIIAHL 375
+ +
Sbjct: 364 SETLTEDE 371
>gi|254824619|ref|ZP_05229620.1| transcription elongation factor NusA [Listeria monocytogenes FSL
J1-194]
gi|254852628|ref|ZP_05241976.1| transcription elongation factor NusA [Listeria monocytogenes FSL
R2-503]
gi|254932363|ref|ZP_05265722.1| transcription elongation factor NusA [Listeria monocytogenes
HPB2262]
gi|255521785|ref|ZP_05389022.1| transcription elongation factor NusA [Listeria monocytogenes FSL
J1-175]
gi|300765438|ref|ZP_07075420.1| N utilization substance protein A [Listeria monocytogenes FSL
N1-017]
gi|258605943|gb|EEW18551.1| transcription elongation factor NusA [Listeria monocytogenes FSL
R2-503]
gi|293583919|gb|EFF95951.1| transcription elongation factor NusA [Listeria monocytogenes
HPB2262]
gi|293593857|gb|EFG01618.1| transcription elongation factor NusA [Listeria monocytogenes FSL
J1-194]
gi|300513875|gb|EFK40940.1| N utilization substance protein A [Listeria monocytogenes FSL
N1-017]
gi|328468605|gb|EGF39605.1| transcription elongation factor NusA [Listeria monocytogenes 1816]
gi|328475044|gb|EGF45832.1| transcription elongation factor NusA [Listeria monocytogenes 220]
gi|332311765|gb|EGJ24860.1| Transcription elongation protein nusA [Listeria monocytogenes str.
Scott A]
Length = 372
Score = 349 bits (895), Expect = 7e-94, Method: Composition-based stats.
Identities = 148/368 (40%), Positives = 229/368 (62%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E
Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 AVEQVFDSRLEISMEEAHKLNPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+
Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++
Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E
Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + N+ ++
Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETVATELGIYPRNDVEAPEVEDAE 363
Query: 368 VDEIIAHL 375
+
Sbjct: 364 SETYTEDE 371
>gi|282882060|ref|ZP_06290701.1| transcription termination factor NusA [Peptoniphilus lacrimalis
315-B]
gi|300813713|ref|ZP_07094033.1| transcription termination factor NusA [Peptoniphilus sp. oral taxon
836 str. F0141]
gi|281298090|gb|EFA90545.1| transcription termination factor NusA [Peptoniphilus lacrimalis
315-B]
gi|300512170|gb|EFK39350.1| transcription termination factor NusA [Peptoniphilus sp. oral taxon
836 str. F0141]
Length = 430
Score = 349 bits (895), Expect = 7e-94, Method: Composition-based stats.
Identities = 159/431 (36%), Positives = 256/431 (59%), Gaps = 4/431 (0%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E ++ + + EK I +D++ + ++ + + YGT ++ V+++ ETG+I LF
Sbjct: 2 NQEFIEALNEIEKEKGISKDIIFDALEQALVSSYKKNYGTSQNVIVKMDRETGEIKLFAY 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+VEEVEN +ISL+ A+ D + +G + + P +FGR+A Q+AKQV+IQ++++A
Sbjct: 62 KNIVEEVENPEIEISLEDAKKIDINFKLGDNYTKEIHPKNFGRIAAQTAKQVVIQRIKDA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ERD + +F K E+++G V+R +GNV VDLG ++G++ +E I E+ + GDR K
Sbjct: 122 ERDVIFEDFTKKERELLTGLVQRSNHGNVYVDLGKTEGILLPNEQIKGESYKHGDRYKML 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ +V++ +GPQV+LSR+HP + +LF +EVPEI GIV++ ++SR+ GSR K+AVFS D
Sbjct: 182 LLEVKKSSKGPQVILSRSHPDLIKRLFELEVPEINEGIVEIYSISREAGSRTKIAVFSLD 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DP+GACVG +G RV A+V EL +EKIDIV++ D F+ N+L P+ V KV ++ED
Sbjct: 242 PEVDPLGACVGYKGQRVNAIVDELSNEKIDIVIYQKDPQEFIANSLSPSKVEKVFINEDD 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
IVP QLSLAIG+ GQNVRLA++LTGW IDI + + +++ + +
Sbjct: 302 KSALAIVPDYQLSLAIGKEGQNVRLAAKLTGWKIDIKSMSQYEEYLEEENITEEELEKR- 360
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425
E L D + + + SE +E +E+T + I+ +
Sbjct: 361 --FSEKKESDLSESDSLDSYDNSNEENSEDLEVEK-NEDTLKSNENIEEVSDNNINNEIT 417
Query: 426 KKIRELGVSEE 436
+ S +
Sbjct: 418 EDFENDIESND 428
>gi|46907548|ref|YP_013937.1| transcription elongation factor NusA [Listeria monocytogenes
serotype 4b str. F2365]
gi|46880816|gb|AAT04114.1| N utilization substance protein A [Listeria monocytogenes serotype
4b str. F2365]
Length = 372
Score = 349 bits (895), Expect = 7e-94, Method: Composition-based stats.
Identities = 148/368 (40%), Positives = 229/368 (62%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E
Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 AVEQVFDSRLEISMEEAHKLNPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+
Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++
Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E
Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + N+ ++
Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETVATELGIYPRNDVEAPEVEDAE 363
Query: 368 VDEIIAHL 375
+
Sbjct: 364 SETYSEDE 371
>gi|225572728|ref|ZP_03781483.1| hypothetical protein RUMHYD_00917 [Blautia hydrogenotrophica DSM
10507]
gi|225039901|gb|EEG50147.1| hypothetical protein RUMHYD_00917 [Blautia hydrogenotrophica DSM
10507]
Length = 405
Score = 349 bits (895), Expect = 9e-94, Method: Composition-based stats.
Identities = 146/344 (42%), Positives = 226/344 (65%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
ELL + + EK+I +D +L + S+ +A ++ YG +++V I+P+T D S++
Sbjct: 2 NTELLGALEILEKEKNISKDTLLDAIEQSLIQACKNHYGKADNVKVSIDPQTCDFSVYAE 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVE+VE+ +ISL+ A ++G V+ P+ +FGR+A Q+AK VI+QK+RE
Sbjct: 62 RTVVEQVEDPVMEISLENALKISARAEVGDVIKVPINSKEFGRIATQNAKNVILQKIREE 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y ++ K ++++G V+R NV ++LG +D ++ +E + E P +R+K Y
Sbjct: 122 ERKVLYNQYYGKEKDVVTGIVQRNLGKNVSINLGKADALLNENEQVKTEVFHPTERIKVY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I +V+ +GP++L+SRTHP+ + +LF EV E+ GIV++K+++R+ GSR K+AV+S+D
Sbjct: 182 ILEVKDTPKGPRILVSRTHPELVKRLFESEVAEVREGIVEIKSIAREAGSRTKIAVWSND 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DPVGACVGM G+RV A+V+ELR EKIDI+ WS + A + NAL PA V V+ D D
Sbjct: 242 PDVDPVGACVGMNGARVNAIVSELRGEKIDIINWSENPAILIENALSPAKVIAVMADPDE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E +
Sbjct: 302 KTALVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSETQAKE 345
>gi|163791587|ref|ZP_02185988.1| transcription elongation factor NusA [Carnobacterium sp. AT7]
gi|159873136|gb|EDP67239.1| transcription elongation factor NusA [Carnobacterium sp. AT7]
Length = 425
Score = 348 bits (894), Expect = 9e-94, Method: Composition-based stats.
Identities = 149/400 (37%), Positives = 236/400 (59%), Gaps = 4/400 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L +A+ EK I ++ V+ + ++ A + Y ++ VE + + G+I ++ + E
Sbjct: 4 EMLNALNALEQEKGIPKEFVIEALEVALISAYKRNYDQAQNVEVEFDLKKGNIHVYSVKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
V + V + ++ L+ A + + + ++G + + P DFGR+A Q+AKQVI+Q+VREAER
Sbjct: 64 VADVVYDSRLEVGLEEALELNKAYELGDKIRFEVTPKDFGRIAAQTAKQVIMQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y EF +I+ G V+R ++ + V+LG + V+ + E I E +P DR+K Y+
Sbjct: 124 NIIYNEFIAYENDIMQGIVERQDHRYIYVNLGKIEAVLSKQEQIPNEVYKPHDRIKVYVT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +GPQ+ +SR+HP + +LF EVPEIY+G+V++ +++R+ G RAK+AV S + +
Sbjct: 184 KVENTSKGPQIFVSRSHPDLLKRLFEQEVPEIYDGVVEIVSIAREAGDRAKVAVRSREEN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
IDPVG CVG +G RVQA+V EL+ E +DIV W D AT++ NAL PA V V +E G
Sbjct: 244 IDPVGTCVGPKGQRVQAIVNELKGENMDIVEWDADPATYIGNALNPAQVVSVTFNEAAGS 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE---RTQFFMQ 364
V+VP QLSLAIG+RGQN RLA++LTG+ IDI +E + + + + + +
Sbjct: 304 CLVVVPDYQLSLAIGKRGQNARLAAKLTGYKIDIKSETDMAAIQLAKEEAGLVKDAEYAE 363
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404
I E + E E + EI I+ EE
Sbjct: 364 VIETIESQEQEMNEEEIIQTVEDLDTEFDEIT-IDADIEE 402
>gi|226223923|ref|YP_002758030.1| N utilization substance protein A (NusA protein) [Listeria
monocytogenes Clip81459]
gi|225876385|emb|CAS05094.1| Putative N utilization substance protein A (NusA protein) [Listeria
monocytogenes serotype 4b str. CLIP 80459]
Length = 372
Score = 348 bits (894), Expect = 1e-93, Method: Composition-based stats.
Identities = 148/368 (40%), Positives = 229/368 (62%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E
Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 AVEQVFDSRLEISMEEAHKVNPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+
Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++
Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E
Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + N+ ++
Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETVATELGIYPRNDVEAPEVEDAE 363
Query: 368 VDEIIAHL 375
+
Sbjct: 364 SETYTEDE 371
>gi|37926540|pdb|1L2F|A Chain A, Crystal Structure Of Nusa From Thermotoga Maritima: A
Structure-Based Role Of The N-Terminal Domain
Length = 369
Score = 348 bits (894), Expect = 1e-93, Method: Composition-based stats.
Identities = 140/336 (41%), Positives = 223/336 (66%), Gaps = 1/336 (0%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
LL+ D + EK I ++ V+ ++ ++ A R +G ++ V I+ TG+I +++LLEV
Sbjct: 30 LLEALDQLEEEKGISKEEVIPILEKALVSAYRKNFGNSKNVEVVIDRNTGNIKVYQLLEV 89
Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
VEEVE+ QISL+ A+ DP ++G +V L +FGR+A Q+AKQV+IQ++RE E++
Sbjct: 90 VEEVEDPATQISLEEAKKIDPLAEVGSIVKKELNVKNFGRIAAQTAKQVLIQRIRELEKE 149
Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
+Q+ ++ + G + + V RV + +G + + + E I E ++ GD VK YI D
Sbjct: 150 KQFEKYSELKGTVTTAEVIRVXGEWADIRIGKLETRLPKKEWIPGEEIKAGDLVKVYIID 209
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V + +GP++L+SR P+F++ L +E+PE+ NGIV++KA++R+PG R K+AV S+D ++
Sbjct: 210 VVKTTKGPKILVSRRVPEFVIGLXKLEIPEVENGIVEIKAIAREPGVRTKVAVASNDPNV 269
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307
DP+GAC+G GSR+ A++ EL+ EK+D++ WS D + NAL PA V +V + D++
Sbjct: 270 DPIGACIGEGGSRIAAILKELKGEKLDVLKWSDDPKQLIANALAPATVIEVEILDKENKA 329
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343
V+VP QLSLAIG+ GQN RLA++LTGW IDI
Sbjct: 330 ARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 365
>gi|295110274|emb|CBL24227.1| transcription termination factor NusA [Ruminococcus obeum A2-162]
Length = 389
Score = 348 bits (893), Expect = 1e-93, Method: Composition-based stats.
Identities = 147/344 (42%), Positives = 225/344 (65%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
EL++ D + EK+I +D +L + S+ +A ++ +G ++ V INPET D S++
Sbjct: 2 NKELMEALDILEKEKNISKDTLLGAIEQSLIQACKNHFGKADNVHVTINPETCDFSVYAE 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
EV E VE+ +ISL A+ + + ++G ++ + +FGR+A Q+AK VI+QK+RE
Sbjct: 62 REVKEFVEDPAMEISLVEAQKLNTNAELGDIIKVEIHSKEFGRIATQNAKNVILQKIREE 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y ++ E+++G V+RV NV V+LG +DGV+ +E + E +P +R+K Y
Sbjct: 122 ERKVLYDQYYGMEKEVVTGIVQRVMGKNVSVNLGKADGVLSENEQVKGEEFKPTERIKVY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I +V+ +GP++LLSRTHP + +LF EV E+ +G V++K+++R+ GSR K+AV+S+D
Sbjct: 182 ILEVKDTPKGPRILLSRTHPGLVKRLFESEVAEVKDGTVEIKSIAREAGSRTKIAVWSND 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DPVGACVGM G+RV ++V ELR EKIDI+ W + A + NAL PA V V+ D D
Sbjct: 242 PDVDPVGACVGMNGARVNSIVEELRGEKIDIINWDENPAILIENALSPAKVIAVMADPDE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E +
Sbjct: 302 KTALVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSETQARE 345
>gi|229824126|ref|ZP_04450195.1| hypothetical protein GCWU000282_01430 [Catonella morbi ATCC 51271]
gi|229786480|gb|EEP22594.1| hypothetical protein GCWU000282_01430 [Catonella morbi ATCC 51271]
Length = 397
Score = 348 bits (893), Expect = 1e-93, Method: Composition-based stats.
Identities = 142/343 (41%), Positives = 213/343 (62%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
EL++ + EK I R V+ + ++ A + Y ++ V+ + G I ++ + E
Sbjct: 4 ELVKAMQVLEEEKGISRQVIKEALESALALAYKKNYDQAQNVEVQFDENKGTIKVYSVKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVE + T +ISL+ A + + +IG + + P DFGR+A Q+AK VI+Q++REAER
Sbjct: 64 VVETNYDSTLEISLEEALKINRAYEIGDKIKFEVTPKDFGRIATQTAKHVIMQRIREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ + EF V EI++GTV+R ++ + V++G + ++ E I E P R+K Y+
Sbjct: 124 ENIFEEFSQYVDEIMTGTVERQDHRFIYVNIGRVEAIMPLGEQIPSEQFEPDQRIKVYVA 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+++SR H F+ +LF EVPEIY+G V+V A++R+ G RAK+AV S D +
Sbjct: 184 KVDKTSKGPQIVVSRAHNDFLRRLFEQEVPEIYDGTVEVMAIAREAGDRAKVAVRSRDKN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
IDPVG CVG RG RVQA+V EL E +DI+ W+ D F+ NAL PA V KV +E+
Sbjct: 244 IDPVGTCVGPRGQRVQAIVNELNGENMDIIEWNEDPVVFIQNALSPAQVIKVDFNEEAHA 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350
V+VP QLSLAIG+RGQN RLA++LT + IDI +E +
Sbjct: 304 CIVVVPDNQLSLAIGKRGQNARLAARLTTYKIDIKSESSYADY 346
>gi|291550231|emb|CBL26493.1| transcription termination factor NusA [Ruminococcus torques L2-14]
Length = 395
Score = 348 bits (893), Expect = 1e-93, Method: Composition-based stats.
Identities = 150/358 (41%), Positives = 232/358 (64%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
ELL+ D + EK+I +DV+L + +S+ A ++ +GT +I++ ++ T D S++
Sbjct: 2 NTELLEALDILEKEKNISKDVMLEAIENSLLSACKNHFGTSDNIKIVMDRNTCDYSVYAE 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
EVVEEV + +ISL+ A +P++ IG + L +FGR+A Q+AK +I+QK+RE
Sbjct: 62 REVVEEVFDPAIEISLEDAEKINPALHIGDIAQVELHSKEFGRIATQNAKNLILQKIREE 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER + ++ +K +I++G V+R N+ V+LG +D ++ +E + E+ P +R+K Y
Sbjct: 122 ERKAVFDQYFEKEKDIVTGIVQRYIGKNISVNLGKADAILTENEQVKGEHFEPTERIKLY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I +V+ +GP++L+SRTHP+ + +LF EV E+ +G V++K+++R+ GSR K+AV+S+D
Sbjct: 182 IVEVKNTPKGPKILVSRTHPELVKRLFESEVAEVKDGTVEIKSIAREAGSRTKMAVWSND 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
++DPVGACVGM G+RV AVV ELR EKIDI+ W + A + NAL PA V V+ D D
Sbjct: 242 PNVDPVGACVGMNGARVNAVVKELRGEKIDIINWDENPALLIENALSPAKVISVMADPDE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + N Q M
Sbjct: 302 KIAGVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQAIECGDLPENYMEQMGM 359
>gi|290969147|ref|ZP_06560672.1| transcription termination factor NusA [Megasphaera genomosp. type_1
str. 28L]
gi|290780653|gb|EFD93256.1| transcription termination factor NusA [Megasphaera genomosp. type_1
str. 28L]
Length = 372
Score = 348 bits (892), Expect = 2e-93, Method: Composition-based stats.
Identities = 157/355 (44%), Positives = 224/355 (63%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
ELL ++ EK + DV+ + + A + VE+N ETGD +
Sbjct: 2 NKELLNAIAFLSKEKGVSPDVICDSLEAVLITAYKKEPEANPMADVELNRETGDYRIVAA 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV EV N +I L AR ++ + +IG +V + P +FGR+A Q+AKQV+IQ++REA
Sbjct: 62 KTVVAEVTNENEEIVLAEARKQNAAYEIGDMVKVDVTPHNFGRIAAQAAKQVMIQRLREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y EF ++ +II+G V+R+E V VDLG ++ V+ E I+ E G R+K Y
Sbjct: 122 ERSIVYDEFYNRTDDIITGLVQRIENKIVYVDLGKAEAVLPVSEQIAEEQYYVGQRLKCY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ +VR+ +G Q+L+SRTHP + +LF +EVPEIY+G+V++K+V+R+PG R+K+AVFS D
Sbjct: 182 VVEVRKTTKGAQILVSRTHPGLLKRLFELEVPEIYDGVVELKSVAREPGRRSKIAVFSRD 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+++D VGACVG +G RVQ +VTEL++EKIDIV W D A ++ NAL PA V V +DE+
Sbjct: 242 TNVDCVGACVGPKGVRVQNIVTELQNEKIDIVKWDEDPAVYIANALSPAQVVSVTIDEEN 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
VIVP QLSLAIG+ GQN RLA++LT W IDI +E + KD
Sbjct: 302 KMSAVIVPDYQLSLAIGKAGQNARLAAKLTNWKIDIKSESQAKDGNSKDNEGEPD 356
>gi|302387320|ref|YP_003823142.1| transcription termination factor NusA [Clostridium saccharolyticum
WM1]
gi|302197948|gb|ADL05519.1| transcription termination factor NusA [Clostridium saccharolyticum
WM1]
Length = 400
Score = 348 bits (892), Expect = 2e-93, Method: Composition-based stats.
Identities = 144/344 (41%), Positives = 221/344 (64%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
ELL+ + + E +I +D +L + +S+ A ++ +G +I+V IN ET D ++F
Sbjct: 2 NKELLEALNILEKENNISKDTLLEAIENSLLTACKNHFGKADNIKVSINRETCDFNVFAE 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
EVVE VE+ QISL A+ DP D+G V+ P+ FGR+A Q+AK VI+QK+RE
Sbjct: 62 KEVVETVEDPLLQISLAEAKMTDPKYDVGDVIHCPIDSKKFGRIATQNAKNVILQKIREE 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
R + ++ + E+++G V+R NV ++LG D ++ E + E + +R+K +
Sbjct: 122 GRKSLFNDWYCQEREVVTGIVQRYLGRNVSINLGKVDAILNETEMVKGEVFKATERIKVF 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ +V+ +GP++ +SRTHP + +LF EV E+ +G V++KA++R+ GSR K+AV S+D
Sbjct: 182 VLEVKDTPKGPRISVSRTHPDLVKRLFESEVAEVKDGTVEIKAIAREAGSRTKIAVKSND 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+++DPVGACVG+ G+RV ++V ELR EKIDI+ W + A + NAL PA V VV DE
Sbjct: 242 ANVDPVGACVGLNGARVNSIVNELRGEKIDIINWDDNPAYLIENALSPAKVICVVADEVS 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
+VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E +
Sbjct: 302 KEAQVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQARE 345
>gi|157692343|ref|YP_001486805.1| transcription elongation factor NusA [Bacillus pumilus SAFR-032]
gi|157681101|gb|ABV62245.1| transcription elongation factor NusA [Bacillus pumilus SAFR-032]
Length = 371
Score = 348 bits (892), Expect = 2e-93, Method: Composition-based stats.
Identities = 148/353 (41%), Positives = 229/353 (64%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + EK I +++++ + ++ A + + ++RV++N ETG I +F +
Sbjct: 4 ELLDALTVLEKEKGISKEIIIEAIEAALISAYKRNFNQAQNVRVDLNRETGTIRVFARKD 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +IS+ A + +P+ +G VV + P DFGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 VVDEVYDSRLEISVDDAANINPNYMVGDVVEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF D+ +I++G V+R++ + V LG + ++ +E + E+ +P DR+K +I
Sbjct: 124 GVIYTEFIDREEDIMTGIVQRIDSKFIYVSLGKIEALLPVNEQMPNEDYKPHDRIKVFIT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V + D
Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEIEVPEIYDGTVELKSVAREAGDRSKISVRTDDPD 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVG+CVG +G RVQA+V EL+ EKIDIV WS D FV NAL P+ V V+++E+
Sbjct: 244 VDPVGSCVGPKGQRVQAIVNELKGEKIDIVHWSNDPVEFVANALSPSKVLDVIVNEEDKA 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
VIVP QLSLAIG+RGQN RLA++LT W IDI +E + E ++
Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTSWKIDIKSETDARELGIFPRTEDSE 356
>gi|291546819|emb|CBL19927.1| transcription termination factor NusA [Ruminococcus sp. SR1/5]
Length = 397
Score = 347 bits (891), Expect = 2e-93, Method: Composition-based stats.
Identities = 145/349 (41%), Positives = 222/349 (63%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
+L D + EK+I +D +L + S+ +A ++ +G ++ V I+PET D S++
Sbjct: 4 DLRDALDVLEKEKNISKDTLLEAIEQSLIQACKNHFGKADNVHVMIDPETCDFSVYADRT 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVE VE+ +ISL A+ + + +IG V+ + +FGR+A Q+AK VI+QK+RE ER
Sbjct: 64 VVEHVEDPALEISLVDAQKTNTNAEIGDVMKVEIQSKEFGRIATQNAKNVILQKIREEER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y ++ E+++G V+RV NV ++LG +D V+ +E + E +P +RVK YI
Sbjct: 124 KVLYDQYYGIEKEVVTGIVQRVMGKNVSINLGKADAVLTENEQVKGETFQPTERVKVYIL 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
+V+ +GP++L+SRTHP + +LF EV E+ +G V++K+++R+ GSR K+AV+S+D
Sbjct: 184 EVKDTPKGPRILVSRTHPGLVKRLFESEVAEVRDGTVEIKSIAREAGSRTKIAVWSNDPD 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+D VGACVGM G+RV AVV EL EKIDI+ W + A + NAL PA V V+ D D
Sbjct: 244 VDAVGACVGMNGARVGAVVNELHGEKIDIINWDENPAILIENALSPAKVIAVMADPDEKT 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356
V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + + +
Sbjct: 304 ALVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSETQARESGDFYDD 352
>gi|78222794|ref|YP_384541.1| transcription elongation factor NusA [Geobacter metallireducens
GS-15]
gi|78194049|gb|ABB31816.1| NusA antitermination factor [Geobacter metallireducens GS-15]
Length = 381
Score = 347 bits (891), Expect = 2e-93, Method: Composition-based stats.
Identities = 176/366 (48%), Positives = 246/366 (67%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
L I D + EK IDRD+V+ + ++ AA Y D+ NPE G++ LF + V
Sbjct: 7 LKHIIDQIVKEKGIDRDIVVEALEQAVLSAANKKYRNTRDLEAHYNPEVGEVELFEFVTV 66
Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
V+EV + +I L+ AR+ DP +++G + + F R+A Q+AKQVIIQKVREAER+
Sbjct: 67 VDEVMDSYKEIDLEEAREIDPDVEVGDSLGMKMDASGFTRIAAQTAKQVIIQKVREAERE 126
Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
+ EFKD++GE+I+G V+R E G+++VDLG ++ ++ E RE R GDR+K+ I D
Sbjct: 127 TIFNEFKDRIGELINGVVRRFEKGDLVVDLGRAEALLSNKEQAPREVYRQGDRIKALIMD 186
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
+R +GPQ++LSRTHP + KLF EVPEI GIV++K+V R+PGSR+K+AV+S DS +
Sbjct: 187 IRMTPKGPQIILSRTHPGVLAKLFEAEVPEIAEGIVEIKSVVREPGSRSKIAVYSHDSDV 246
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308
DPVGACVGMRGSRVQ VV+ELR EKIDI+ WS D A F NAL+PA V+KV +DE+ +
Sbjct: 247 DPVGACVGMRGSRVQNVVSELRGEKIDIIPWSEDPARFACNALQPAAVSKVYIDEENKAL 306
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368
E+IV +QLSLAIG++GQNVRLA++LTGW IDI +E + +F+ +A
Sbjct: 307 EIIVADDQLSLAIGKKGQNVRLAAKLTGWRIDIKSETRAAEAELLEFSSYDGATEEAPQE 366
Query: 369 DEIIAH 374
+
Sbjct: 367 PVEESE 372
>gi|197121571|ref|YP_002133522.1| NusA antitermination factor [Anaeromyxobacter sp. K]
gi|220916334|ref|YP_002491638.1| NusA antitermination factor [Anaeromyxobacter dehalogenans 2CP-1]
gi|196171420|gb|ACG72393.1| NusA antitermination factor [Anaeromyxobacter sp. K]
gi|219954188|gb|ACL64572.1| NusA antitermination factor [Anaeromyxobacter dehalogenans 2CP-1]
Length = 557
Score = 347 bits (891), Expect = 2e-93, Method: Composition-based stats.
Identities = 189/496 (38%), Positives = 274/496 (55%), Gaps = 51/496 (10%)
Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70
I D VA +K IDR ++ ++ ++I AA+ +G +++ + E G + LF++L +V
Sbjct: 9 LILDQVAKDKGIDRAKLIEILEEAIGSAAKRHFGLERNLKARYDEEKGQVDLFQVLTIVP 68
Query: 71 EVE------NYTCQISLKVARDRDPSIDIGGVVSDPLPPM-------------------- 104
+ + + + VA ++ ++ G + P+
Sbjct: 69 DPTEEAPLADPVNMVPVAVAHEKGIDVEPGDELDFPIYYRVEDEAEARAQDEQWGDLLKL 128
Query: 105 -----DFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG 159
FGR+A Q+AKQV+IQ R AER+ + E+KD+ GE+I+G V+R E GNVIVDLG
Sbjct: 129 KTYRRSFGRIAAQTAKQVMIQGTRNAERENVFNEYKDRKGEVITGIVRRFERGNVIVDLG 188
Query: 160 NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEI 219
++ V+ E + RE+ R GDR+++++ DV RE +GPQ++LSR + + KLF MEVPEI
Sbjct: 189 RAEAVLPVREQVPRESYRAGDRIQAFVMDVLRESKGPQIILSRASVELLKKLFEMEVPEI 248
Query: 220 YNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVW 279
G+V ++A +R+PG RAK+AV S DS +DPVGACVGM+GSRVQAVV ELR EKIDIV W
Sbjct: 249 AEGVVVIEAAAREPGGRAKIAVSSRDSDVDPVGACVGMKGSRVQAVVQELRGEKIDIVPW 308
Query: 280 SPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
D A FV NAL PA V++V+LDE +E+IVP +QLSLAIGRRGQNVRLASQ+TGW +
Sbjct: 309 DEDPARFVCNALAPAEVSRVLLDEQNRAMEIIVPDDQLSLAIGRRGQNVRLASQVTGWKL 368
Query: 340 DIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIE 399
DI +E R+ AI + E +L A GF +++A +
Sbjct: 369 DINSESRVKEMREFATESF-----GAIGIPEQTQEMLYAHGFRKAQDVANAAPEMLTQFP 423
Query: 400 GFDEETAVEIQGRAREYLEGIDITLQKKIRE---------------LGVSEELCSIPGID 444
GF + ++Q RARE + +E L E + G+
Sbjct: 424 GFTMDMIPDLQKRAREQSIEDAEKEMRLEQEREAARIAEARRHPDSLTQEERFARVRGVG 483
Query: 445 SKIKVALGENGIKTME 460
K + G T+E
Sbjct: 484 EKTIEQMKLAGYPTVE 499
>gi|322418688|ref|YP_004197911.1| NusA antitermination factor [Geobacter sp. M18]
gi|320125075|gb|ADW12635.1| NusA antitermination factor [Geobacter sp. M18]
Length = 397
Score = 347 bits (891), Expect = 2e-93, Method: Composition-based stats.
Identities = 172/350 (49%), Positives = 236/350 (67%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
L D + EK ID+ +V+ + ++ AA + D+ NPE G++ LF + V
Sbjct: 7 LKHTIDQIVKEKGIDKGIVVEALEQAVLTAANKKFRNTRDLEAHYNPEIGEVELFEFVTV 66
Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
V+EV++ +I L AR+ DP ++IG + + F R+A Q+AKQVIIQ+VREAER+
Sbjct: 67 VDEVQDSYREIELDEAREEDPDVEIGDSIGMKMDASGFSRIAAQTAKQVIIQRVREAERE 126
Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
+ EF ++ GEI++G V+R E G++IVDLG ++ ++ E RE R GDRVK+ I +
Sbjct: 127 TIFNEFMERQGEIVNGVVRRFEKGDLIVDLGRAEALLPHKEQAPREVYRQGDRVKALITE 186
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
+R +GPQ++LSRTHP + KLF EVPEI GIV++K+V R+PG RAK+AV+S D +
Sbjct: 187 IRMTTKGPQIMLSRTHPTMLAKLFEAEVPEIAEGIVEIKSVVREPGGRAKIAVYSHDGDV 246
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308
DPVGACVGMRGSRVQ VV+ELR EKIDI+ WS D A F NAL PA+VTKV +DE+ +
Sbjct: 247 DPVGACVGMRGSRVQNVVSELRGEKIDIIPWSDDIARFACNALAPAVVTKVYVDEEDYAM 306
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
EVIV +QLSLAIG+RGQNVRLA++LTGW IDI +E + + F
Sbjct: 307 EVIVADDQLSLAIGKRGQNVRLAAKLTGWKIDIKSETRMAEAELQQFASY 356
>gi|86157527|ref|YP_464312.1| NusA antitermination factor [Anaeromyxobacter dehalogenans 2CP-C]
gi|85774038|gb|ABC80875.1| NusA antitermination factor [Anaeromyxobacter dehalogenans 2CP-C]
Length = 557
Score = 347 bits (890), Expect = 3e-93, Method: Composition-based stats.
Identities = 189/496 (38%), Positives = 274/496 (55%), Gaps = 51/496 (10%)
Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70
I D VA +K IDR ++ ++ ++I AA+ +G +++ + E G + LF++L +V
Sbjct: 9 LILDQVAKDKGIDRAKLIEILEEAIGSAAKRHFGLERNLKARYDEEKGQVDLFQVLTIVP 68
Query: 71 EVE------NYTCQISLKVARDRDPSIDIGGVVSDPLPPM-------------------- 104
+ + + + VA ++ ++ G + P+
Sbjct: 69 DPTEEAPLADPVNMVPVAVAHEKGIDVEPGDELDFPIYYRAEDEAEARAQDEQWGDLLKL 128
Query: 105 -----DFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG 159
FGR+A Q+AKQV+IQ R AER+ + E+KD+ GE+I+G V+R E GNVIVDLG
Sbjct: 129 KTYRRSFGRIAAQTAKQVMIQGTRNAERENVFNEYKDRKGEVITGIVRRFERGNVIVDLG 188
Query: 160 NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEI 219
++ V+ E + RE+ R GDR+++++ DV RE +GPQ++LSR + + KLF MEVPEI
Sbjct: 189 RAEAVLPVREQVPRESYRAGDRIQAFVMDVLRESKGPQIILSRASVELLKKLFEMEVPEI 248
Query: 220 YNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVW 279
G+V ++A +R+PG RAK+AV S DS +DPVGACVGM+GSRVQAVV ELR EKIDIV W
Sbjct: 249 AEGVVVIEAAAREPGGRAKIAVSSRDSDVDPVGACVGMKGSRVQAVVQELRGEKIDIVPW 308
Query: 280 SPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
D A FV NAL PA V++V+LDE +E+IVP +QLSLAIGRRGQNVRLASQ+TGW +
Sbjct: 309 DEDPARFVCNALAPAEVSRVLLDEQNRAMEIIVPDDQLSLAIGRRGQNVRLASQVTGWKL 368
Query: 340 DIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIE 399
DI +E R+ AI + E +L A GF +++A +
Sbjct: 369 DINSESRVKEMREFATESF-----GAIGIPEQTQEMLYAHGFRKSQDVANAAPEMLTQFP 423
Query: 400 GFDEETAVEIQGRAREYLEGIDITLQKKIRE---------------LGVSEELCSIPGID 444
GF + ++Q RARE + +E L E + G+
Sbjct: 424 GFTMDMIPDLQKRAREQSIEDAEKEMRLEQEREAARIAEARRHPDTLTQEERFARVRGVG 483
Query: 445 SKIKVALGENGIKTME 460
K + G T+E
Sbjct: 484 EKTIEQMKLAGYPTVE 499
>gi|49316|emb|CAA79231.1| ORF2 [Bacillus subtilis subsp. subtilis str. 168]
Length = 371
Score = 347 bits (890), Expect = 3e-93, Method: Composition-based stats.
Identities = 147/368 (39%), Positives = 227/368 (61%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + EK I +++++ + ++ A + + ++RV++N ETG I +F +
Sbjct: 4 ELLDALTILEKEKGISKEIIIEAIEAALISAYKRNFNQAQNVRVDLNRETGSIRVFARKD 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +IS++ A+ P +G VV + P DFGR+A Q+A +V+ Q+VREAER
Sbjct: 64 VVDEVYDQRLEISIEEAQGIHPEYMVGDVVEIEVTPKDFGRIAAQTANEVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF D+ +I++G V+R++ + V LG + ++ +E + E+ +P DR+K YI
Sbjct: 124 GVIYSEFIDREEDIMTGIVQRLDNKFIYVSLGKIEALLPVNEQMPNESYKPHDRIKVYIT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V + D
Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEIEVPEIYDGTVELKSVAREAGDRSKISVRTDDPD 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVG+CVG +G RVQA+V EL+ EKIDIV WS D FV NAL P+ V V+++E+
Sbjct: 244 VDPVGSCVGPKGQRVQAIVNELKGEKIDIVNWSSDPVEFVANALSPSKVLDVIVNEEEKA 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
VIVP QLSLAIG+RGQN RLA++LTGW IDI +E +
Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDARELGIYPRELEEDDEPLFTE 363
Query: 368 VDEIIAHL 375
+ +
Sbjct: 364 PETAESDE 371
>gi|229552419|ref|ZP_04441144.1| transcription termination factor NusA [Lactobacillus rhamnosus
LMS2-1]
gi|229314156|gb|EEN80129.1| transcription termination factor NusA [Lactobacillus rhamnosus
LMS2-1]
Length = 404
Score = 347 bits (890), Expect = 3e-93, Method: Composition-based stats.
Identities = 146/401 (36%), Positives = 228/401 (56%), Gaps = 2/401 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E++Q DA+ EK + ++VV+ + ++ A + Y ++ V+ +P+ GDI ++ + E
Sbjct: 4 EMIQALDALEQEKGVKKEVVIEALEAALVSAYKRNYNQAQNVDVKFDPKQGDIHVYAVKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
V +EV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+VREAER
Sbjct: 64 VTDEVFDSRLEVSLKDALAINKAYEIGDQIKFEVTPKDFGRIAAQTAKQVIMQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y E+ EI+ G V+R + + V+LG + V+ R + + E DR+K Y+
Sbjct: 124 SIVYDEYSQYEDEILQGVVERRDNRFIYVNLGKIEAVLGRQDQMPNEKYEAHDRIKVYVT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +GPQV +SRTHP + +LF EVPEI++G V++ ++R+ G R K+AV +++ +
Sbjct: 184 KVENTSKGPQVFVSRTHPGLVKRLFEQEVPEIFDGTVEIVNIAREAGDRTKIAVRATNDA 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED--V 305
+D VG VG RG+RVQAVV EL E +D+V W D A ++ NAL PA V V +++
Sbjct: 244 VDAVGTTVGPRGARVQAVVNELSGENMDVVQWEEDPADYIANALNPAQVIAVQFNDEDND 303
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
VIVP QLSLAIG++GQN RLA++LTG+ IDI E E + +E A
Sbjct: 304 RSATVIVPDYQLSLAIGKKGQNARLAAKLTGYKIDIKPESEVEFVDDDELSEAEVEAAAA 363
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406
D+ A+V++ + D+ A
Sbjct: 364 AAADDQDNASQAPSDSAEVDQANDEADETPVTPSTHDQPQA 404
>gi|260887250|ref|ZP_05898513.1| transcription termination factor NusA [Selenomonas sputigena ATCC
35185]
gi|330838993|ref|YP_004413573.1| NusA antitermination factor [Selenomonas sputigena ATCC 35185]
gi|260863312|gb|EEX77812.1| transcription termination factor NusA [Selenomonas sputigena ATCC
35185]
gi|329746757|gb|AEC00114.1| NusA antitermination factor [Selenomonas sputigena ATCC 35185]
Length = 380
Score = 347 bits (890), Expect = 3e-93, Method: Composition-based stats.
Identities = 154/356 (43%), Positives = 233/356 (65%)
Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64
N + L+ A+ E+ ++ +V+ + + ++ A + T +RV ++ TG ++
Sbjct: 13 NDGDFLEAVHALGKERGLEAEVLFAAIEAALSSAYLKDFKTAEQVRVALDRMTGKYHVYA 72
Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VVEEVE+ QISL AR +P+ ++ + + P FGR+A Q+AKQV++Q +RE
Sbjct: 73 TKTVVEEVEDDARQISLADARAVNPNYEVDDKIELEVTPATFGRIAAQTAKQVVVQHIRE 132
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER Y EF ++ G+I++G V+RVE NV +DLG ++ V+ E I E GDR+K+
Sbjct: 133 AERGIVYEEFSNRDGDIVTGRVQRVEAKNVFIDLGKTEAVLTATEQIPGEEYHHGDRIKA 192
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI +V + +GP+VL+SRTHP + +LF +EVPEI G+V++K+V+R+PG R+K+AV+S
Sbjct: 193 YIIEVCKTVKGPRVLVSRTHPGLLKRLFELEVPEIQEGVVEIKSVAREPGMRSKIAVYSK 252
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D ++DPVG+ VG +G RVQA+V ELR+EKIDIV W+P+ A F+ NAL PA V V ++E+
Sbjct: 253 DENVDPVGSSVGHKGMRVQAIVDELRNEKIDIVKWNPEPAKFIANALSPAKVISVAINEE 312
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
V+VP QLSLAIG+ GQNVRLA++LTGW IDI EE+ + + +
Sbjct: 313 AKESRVVVPDYQLSLAIGKEGQNVRLAAKLTGWKIDIKNEEQAAAETLDESMSVIE 368
>gi|258539789|ref|YP_003174288.1| transcription elongation factor NusA [Lactobacillus rhamnosus Lc
705]
gi|257151465|emb|CAR90437.1| Transcription elongation factor NusA [Lactobacillus rhamnosus Lc
705]
Length = 404
Score = 347 bits (890), Expect = 3e-93, Method: Composition-based stats.
Identities = 147/401 (36%), Positives = 228/401 (56%), Gaps = 2/401 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E++Q DA+ EK + ++VV+ + ++ A + Y ++ VE +P+ GDI ++ + E
Sbjct: 4 EMIQALDALEQEKGVKKEVVIEALEAALVSAYKRNYNQAQNVDVEFDPKQGDIHVYAVKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
V +EV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+VREAER
Sbjct: 64 VTDEVFDSRLEVSLKDALAINKAYEIGDQIKFEVTPKDFGRIAAQTAKQVIMQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y E+ EI+ G V+R + + V+LG + V+ R + + E DR+K Y+
Sbjct: 124 SIVYDEYSQYEDEILQGVVERRDNRFIYVNLGKIEAVLGRQDQMPNEKYEAHDRIKVYVT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +GPQV +SRTHP + +LF EVPEI++G V++ ++R+ G R K+AV +++ +
Sbjct: 184 KVENTSKGPQVFVSRTHPGLVKRLFEQEVPEIFDGTVEIVNIAREAGDRTKIAVRATNDA 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED--V 305
+D VG VG RG+RVQAVV EL E +D+V W D A ++ NAL PA V V +++
Sbjct: 244 VDAVGTTVGPRGARVQAVVNELSGENMDVVQWEEDPADYIANALNPAQVIAVQFNDEDND 303
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
VIVP QLSLAIG++GQN RLA++LTG+ IDI E E + +E A
Sbjct: 304 RSATVIVPDYQLSLAIGKKGQNARLAAKLTGYKIDIKPESEVEFVDDDELSEAEVEAAAA 363
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406
D+ A+V++ + D+ A
Sbjct: 364 AAADDQDNASQAPSDSAEVDQANDEADETPVTPSTHDQPQA 404
>gi|194014307|ref|ZP_03052924.1| transcription termination factor NusA [Bacillus pumilus ATCC 7061]
gi|194013333|gb|EDW22898.1| transcription termination factor NusA [Bacillus pumilus ATCC 7061]
Length = 371
Score = 347 bits (890), Expect = 3e-93, Method: Composition-based stats.
Identities = 148/353 (41%), Positives = 229/353 (64%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + EK I +++++ + ++ A + + ++RV++N ETG I +F +
Sbjct: 4 ELLDALTVLEKEKGISKEIIIEAIEAALISAYKRNFNQAQNVRVDLNRETGTIRVFARKD 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +IS+ A + +P+ +G VV + P DFGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 VVDEVYDSRLEISVDDAANMNPNYMVGDVVEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF D+ +I++G V+R++ + V LG + ++ +E + E+ +P DR+K +I
Sbjct: 124 GVIYTEFIDREEDIMTGIVQRIDSKFIYVSLGKIEALLPVNEQMPNEDYKPHDRIKVFIT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V + D
Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEIEVPEIYDGTVELKSVAREAGDRSKISVRTDDPD 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVG+CVG +G RVQA+V EL+ EKIDIV WS D FV NAL P+ V V+++E+
Sbjct: 244 VDPVGSCVGPKGQRVQAIVNELKGEKIDIVHWSNDPVEFVANALSPSKVLDVIVNEEDKA 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
VIVP QLSLAIG+RGQN RLA++LT W IDI +E + E ++
Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTSWKIDIKSETDARELGIFPRTEDSE 356
>gi|199597100|ref|ZP_03210532.1| transcription elongation factor NusA [Lactobacillus rhamnosus
HN001]
gi|258508610|ref|YP_003171361.1| transcription elongation factor NusA [Lactobacillus rhamnosus GG]
gi|199591904|gb|EDY99978.1| transcription elongation factor NusA [Lactobacillus rhamnosus
HN001]
gi|257148537|emb|CAR87510.1| Transcription elongation factor NusA [Lactobacillus rhamnosus GG]
gi|259649917|dbj|BAI42079.1| transcription elongation factor NusA [Lactobacillus rhamnosus GG]
Length = 402
Score = 346 bits (889), Expect = 3e-93, Method: Composition-based stats.
Identities = 140/343 (40%), Positives = 213/343 (62%), Gaps = 2/343 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E++Q DA+ EK + ++VV+ + ++ A + Y ++ VE +P+ GDI ++ + E
Sbjct: 4 EMIQALDALEQEKGVKKEVVIEALEAALVSAYKRNYNQAQNVDVEFDPKQGDIHVYAVKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
V +EV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+VREAER
Sbjct: 64 VTDEVFDSRLEVSLKDALAINKAYEIGDQIKFEVTPKDFGRIAAQTAKQVIMQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y E+ EI+ G V+R + + V+LG + V+ R + + E DR+K Y+
Sbjct: 124 SIVYDEYSQYEDEILQGVVERRDNRFIYVNLGKIEAVLGRQDQMPNEKYEAHDRIKVYVT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +GPQV +SRTHP + +LF EVPEI++G V++ ++R+ G R K+AV +++ +
Sbjct: 184 KVENTSKGPQVFVSRTHPGLVKRLFEQEVPEIFDGTVEIVNIAREAGDRTKIAVRATNDA 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED--V 305
+D VG VG RG+RVQAVV EL E +D+V W D A ++ NAL PA V V +++
Sbjct: 244 VDAVGTTVGPRGARVQAVVNELSGENMDVVQWEEDPADYIANALNPAQVIAVQFNDEDND 303
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
VIVP QLSLAIG++GQN RLA++LTG+ IDI E E
Sbjct: 304 RSATVIVPDYQLSLAIGKKGQNARLAAKLTGYKIDIKPESEVE 346
>gi|197303044|ref|ZP_03168092.1| hypothetical protein RUMLAC_01771 [Ruminococcus lactaris ATCC
29176]
gi|197297899|gb|EDY32451.1| hypothetical protein RUMLAC_01771 [Ruminococcus lactaris ATCC
29176]
Length = 397
Score = 346 bits (889), Expect = 4e-93, Method: Composition-based stats.
Identities = 153/400 (38%), Positives = 249/400 (62%), Gaps = 5/400 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
ELL+ + EK+I +DV++ + +S+ A ++ +GT +I++ ++ ET D S+F
Sbjct: 2 NTELLEALTILEKEKNISKDVMMEAIENSLLSACKNHFGTSDNIKIVMDRETCDYSVFAE 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
EVVEEV + +ISL+ A +PS+ IG + P+ +FGR+A Q+AK +I+QK+RE
Sbjct: 62 KEVVEEVFDPAIEISLEDAEKINPSLHIGDIAQVPVYSKEFGRIATQNAKNLILQKIREE 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER + ++ +K +I++G V+R N+ ++LG +D ++ +E + E+ P +R+K Y
Sbjct: 122 ERKVVFDQYFEKEKDIVTGIVQRYVGKNISINLGRADAMLTENEQVKGEHFEPTERIKLY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I +V+ +GP++L+SRTHP+ + +LF EV E+ +G V++K+++R+ GSR K+AV+S+D
Sbjct: 182 IVEVKNTTKGPKILVSRTHPELVKRLFEAEVAEVKDGTVEIKSIAREAGSRTKMAVWSND 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
++DPVGACVGM G+RV AVV ELR EKIDI+ W + A + NAL PA V V+ D D
Sbjct: 242 PNVDPVGACVGMNGARVNAVVQELRGEKIDIINWDENPALLIENALSPAKVISVMADPDA 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + + E + +M+
Sbjct: 302 KVASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSET-----QAIESGELPENYMEQ 356
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEET 405
+ + + + + A V ++ IE + +
Sbjct: 357 MGMVGEEGYTVGEYDEEEENTEAAVDETDSDEIEFVETDV 396
>gi|302039405|ref|YP_003799727.1| transcription termination factor NusA [Candidatus Nitrospira
defluvii]
gi|300607469|emb|CBK43802.1| Transcription termination factor NusA [Candidatus Nitrospira
defluvii]
Length = 379
Score = 346 bits (889), Expect = 4e-93, Method: Composition-based stats.
Identities = 156/364 (42%), Positives = 233/364 (64%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
EL+ + D + +K ID+ V+ + ++Q AA+ +G +I+VEI+P+TG+IS+
Sbjct: 2 NRELIAVIDEIGRQKGIDKARVIGAIESALQTAAKKRFGQAENIQVEIDPKTGEISVVSK 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+V+ V N +ISLK AR+ D ++G + + + GR+A Q+AKQVI QKVREA
Sbjct: 62 KIIVDTVANPKAEISLKEAREYDEGAEVGDEIGSLIEMDELGRIAAQTAKQVIFQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
E + E+ + G++++G + +E N +VDLG ++ ++ E I RE R GDRVK+
Sbjct: 122 EWEAVQKEYSTRQGDLVNGIILGMERRNFLVDLGKTEAILPIQEQIPRETYRRGDRVKAL 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ +VRR + QV+LSR+HPQF+ K+F +EVPE+ IV++K++ R+PG R K+AV S D
Sbjct: 182 LLEVRRTPKDVQVILSRSHPQFVAKMFELEVPEVGEKIVEIKSIVREPGDRTKIAVSSRD 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
++DPVGACVG++GSRVQAVV ELR EKIDI+ W+ D F+ AL PA + KV +DE+
Sbjct: 242 KAVDPVGACVGIKGSRVQAVVRELRGEKIDIITWTQDPRVFIAEALNPATIEKVGIDEEK 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
V+V QLSLAIG+ GQNVRLA++LTGW IDII+ E + + + +
Sbjct: 302 KSALVVVADSQLSLAIGKNGQNVRLAARLTGWKIDIISATEYEKEKAERDRDIKAALAEE 361
Query: 366 INVD 369
Sbjct: 362 TEAQ 365
>gi|116333944|ref|YP_795471.1| transcription elongation factor NusA [Lactobacillus brevis ATCC
367]
gi|116099291|gb|ABJ64440.1| Transcription elongation factor [Lactobacillus brevis ATCC 367]
Length = 401
Score = 346 bits (889), Expect = 4e-93, Method: Composition-based stats.
Identities = 153/401 (38%), Positives = 228/401 (56%), Gaps = 4/401 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL D + EK ID+ VV+ + ++ A + Y ++ VE + GDI ++ + +
Sbjct: 4 ELLGALDVLETEKGIDKQVVIDALEAALVSAYKRNYDQAQNVEVEFDQRKGDIHVYAVKK 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV++V + ++ L A + ++G + + P +FGR+A Q+AKQVI+Q+VREAER
Sbjct: 64 VVDQVYDSRLEVGLDEALTINKGYELGDDIKFEVTPKNFGRIAAQTAKQVILQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y ++ EI++G V+R + V V LG + V+ R + + E R DRVK Y+
Sbjct: 124 NIIYNQYSQYENEIVTGEVERQDSRFVYVSLGKVEAVMGRQDQMPNETYRIHDRVKVYVT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +GPQV +SRTH + +LF EVPEIY+G V++ A++R+ G RAK+AV S++
Sbjct: 184 RVENATKGPQVFVSRTHADLLKRLFEQEVPEIYDGTVEIMAIAREAGDRAKVAVRSNNPD 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE-DVG 306
IDPVG VG RG RVQ +V EL E +DIV W+ D A F+ NAL PA V V+ D +
Sbjct: 244 IDPVGTSVGPRGQRVQTIVNELGGENMDIVEWTDDEAKFIANALNPAEVLDVIFDPNNER 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
EVIVP QLSLAIG+RGQN RLA++LTG+ IDI +E E S + D +
Sbjct: 304 ACEVIVPDYQLSLAIGKRGQNARLAAKLTGYKIDIKSESEASAIMEADQAADEATTGATV 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV 407
+ D+ A + + A+ + +E+A
Sbjct: 364 SEDDATEP---AAETVADDTTSEETPVNDATTDVASDESAE 401
>gi|255284074|ref|ZP_05348629.1| transcription termination factor NusA [Bryantella formatexigens DSM
14469]
gi|255265419|gb|EET58624.1| transcription termination factor NusA [Bryantella formatexigens DSM
14469]
Length = 427
Score = 346 bits (888), Expect = 5e-93, Method: Composition-based stats.
Identities = 154/427 (36%), Positives = 243/427 (56%), Gaps = 1/427 (0%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
EL++ D + EK+I ++V+L + S+ +A ++ +G +++V+INP+T + S+
Sbjct: 2 NNELMEALDVLEKEKNISKEVLLEAIEQSLLQACKNHFGKADNVKVDINPDTCEFSVHAE 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVEEVE+ +ISL A+ +D ++G VV+ + +FGR+A Q+AK VI+QK+RE
Sbjct: 62 KTVVEEVEDPVTEISLVDAKMKDSRYEVGDVVNVEIKSKEFGRIATQNAKNVILQKIREE 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y E+ K E+++G V+R NV ++LG D ++ +E + E RP +R+K Y
Sbjct: 122 ERKVLYNEYYSKEREVVTGIVQRYLGRNVSINLGKVDAILNENEMVKGETFRPTERIKVY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ +V+ +GP+VL+SRTHP+ + +LF EV E+ +G V++K ++R+ G+R K+AV+S+D
Sbjct: 182 VLEVKDTPKGPKVLVSRTHPELVKRLFESEVTEVRDGTVEIKCIAREAGNRTKMAVWSND 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+D VGACVG+ GSRV +V ELR EKIDI+ W + A + NAL PA V V D D
Sbjct: 242 PDVDAVGACVGINGSRVNTIVEELRGEKIDIINWDENPALLIENALSPAKVIYVAADNDE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
+V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + D E +++
Sbjct: 302 KTAKVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSETQAIEAGDFDEMEEEEYYEDD 361
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425
+ + + + E E +E E+ A E D
Sbjct: 362 YDEYSDTYADDYSGQYEEGELYEEEPEMTEV-PEDMEEPELTEVPEDAEEAETTGDSESP 420
Query: 426 KKIRELG 432
Sbjct: 421 ADPETEE 427
>gi|153004006|ref|YP_001378331.1| NusA antitermination factor [Anaeromyxobacter sp. Fw109-5]
gi|152027579|gb|ABS25347.1| NusA antitermination factor [Anaeromyxobacter sp. Fw109-5]
Length = 556
Score = 346 bits (888), Expect = 5e-93, Method: Composition-based stats.
Identities = 194/496 (39%), Positives = 277/496 (55%), Gaps = 51/496 (10%)
Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70
I D VA +K IDR ++ ++ ++I AA+ +G +++ + E G + LF++L +V
Sbjct: 9 LILDQVAKDKGIDRTRLVEILEEAIGSAAKRHFGMERNLKARYDEEKGQVDLFQVLTIVT 68
Query: 71 EVE------NYTCQISLKVARDRDPSIDIGGVVSDPLPPM-------------------- 104
+ + I + VA ++ ++ G + P+
Sbjct: 69 DPTEETPLADPVNMIPVSVAHEKGIEVEPGDELDFPIYYRTEDEAEARAQDEQWGDLLKL 128
Query: 105 -----DFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG 159
FGR+A Q+AKQV+IQ R AER+ + E+KD+ GE+I+G V+R E GNVIVDLG
Sbjct: 129 KTYRRSFGRIAAQTAKQVMIQGTRNAERENVFNEYKDRKGEVITGIVRRFERGNVIVDLG 188
Query: 160 NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEI 219
++ V+ E + RE+ R GDR+++Y+ DV RE +GPQ++LSR + KLF MEVPEI
Sbjct: 189 RAEAVLPVREQVPRESYRAGDRIQAYVMDVLRESKGPQIILSRASVDLLRKLFEMEVPEI 248
Query: 220 YNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVW 279
G+V ++A +R+PG RAK+AV S DS +DPVGACVGM+GSRVQAVV ELR EKIDIV W
Sbjct: 249 AEGVVVIEAAAREPGGRAKIAVSSRDSDVDPVGACVGMKGSRVQAVVQELRGEKIDIVPW 308
Query: 280 SPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
D A FV NAL PA V++V+LDE +E+IVP +QLSLAIGRRGQNVRLASQLTGW +
Sbjct: 309 DDDYARFVCNALAPAEVSRVLLDEQNKAMEIIVPDDQLSLAIGRRGQNVRLASQLTGWKL 368
Query: 340 DIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIE 399
DI +E R+ AI + E +L A GF +++A +
Sbjct: 369 DINSESRVKEMREFATESF-----GAIGIPEATQEMLYAHGFRKAQDVANAASEMLTQFP 423
Query: 400 GFDEETAVEIQGRARE---YLEGIDITLQKKIR------------ELGVSEELCSIPGID 444
GF + E+Q RARE ++ L+++ EL E + G+
Sbjct: 424 GFTMDMIPELQKRAREQSIVDAEKEMRLEQEREAARIAEARRHPDELTQEERFARVRGVG 483
Query: 445 SKIKVALGENGIKTME 460
K L G ++E
Sbjct: 484 EKTIEQLKVAGYGSVE 499
>gi|171913143|ref|ZP_02928613.1| transcription elongation factor NusA [Verrucomicrobium spinosum DSM
4136]
Length = 417
Score = 346 bits (888), Expect = 5e-93, Method: Composition-based stats.
Identities = 157/409 (38%), Positives = 246/409 (60%), Gaps = 1/409 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
EL + + EK IDR ++ + ++ A++ G ++R+EI+P+ G I F L
Sbjct: 4 ELKALFEYYEKEKGIDRSKMVDALQSALLAASKKSIGPARELRIEIDPDKGSIRAFARLL 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
V + VEN Q+S+K AR G V + P DFGR+A Q+AKQ +Q++REAE+
Sbjct: 64 VSDTVENPFEQLSVKHARKLKADAQPGDEVDIEVTPKDFGRIAAQTAKQTWMQRLREAEK 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EFKD+ G+++SGT++R + +V+VDLG +G++ E + E+ GDR++ Y+
Sbjct: 124 ANLYDEFKDRTGDVVSGTIRRFDKSDVVVDLGKFEGIMTSRERVPTEDYTSGDRMRFYVK 183
Query: 188 DVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
V + RGP+++LSR+HP F+ +LF EV EI + V++ +++R+ G R K+AV S+D
Sbjct: 184 AVEKSTSRGPEIILSRSHPNFVRRLFEFEVSEIADRTVEIVSIAREAGYRTKVAVHSADD 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
+DPVGACVG+RG+RV+ +V EL +EK+DI+ WS D A F AL+P + + +DED
Sbjct: 244 KVDPVGACVGLRGARVKNIVRELNNEKVDIIRWSKDVAEFTKEALKPIKILSIKVDEDHK 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
R+ + V +E+LS AIGR+GQN RL S+L G+ + I +E + + E +
Sbjct: 304 RVLLTVSEEELSKAIGRKGQNARLTSRLIGYDLVIEKDEHAAKVFESHVEEAVHRIAADL 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415
++D IA LV EG +D+ A + +IASI D E A +I +
Sbjct: 364 DIDRNIARKLVGEGLSDLSNFADADVDDIASIVDGDTELAQQIVDKVAA 412
>gi|222099941|ref|YP_002534509.1| N utilization substance protein A [Thermotoga neapolitana DSM 4359]
gi|221572331|gb|ACM23143.1| N utilization substance protein A [Thermotoga neapolitana DSM 4359]
Length = 344
Score = 346 bits (887), Expect = 7e-93, Method: Composition-based stats.
Identities = 141/336 (41%), Positives = 226/336 (67%), Gaps = 1/336 (0%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
LL+ D + EK I ++ V+ ++ ++ A R +G+ ++ V I+ TG+I +++LLEV
Sbjct: 5 LLEALDQLEEEKGISKEEVIPILEKALVSAYRKNFGSSKNVEVVIDRNTGNIKVYQLLEV 64
Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
VE VE+ T QISL+ A+ DP+ +IG ++ L +FGR+A Q+AKQV+IQ++RE E++
Sbjct: 65 VENVEDSTTQISLEEAKKLDPTAEIGSIIKKELDVKNFGRIAAQTAKQVLIQRIRELEKE 124
Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
+Q+ ++ + G + + V RV + +G + + + E I E ++PGD VK YI D
Sbjct: 125 KQFEKYSELKGTVTTAEVIRVTSDWADIRIGKLETRLPKKEWIPGEEIKPGDLVKVYIID 184
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V + +GP++L+SR P+F++ L +E+PEI NGIV++KA++R+PG R K+AV S++ ++
Sbjct: 185 VVKTTKGPKILVSRRVPEFVIGLMKLEIPEIENGIVEIKAIAREPGVRTKVAVTSNNPNV 244
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307
DP+GAC+G GSR+ A++ EL+ EK+D++ WS D + NAL PA V +V + D++
Sbjct: 245 DPIGACIGEGGSRIAAILRELKGEKLDVLKWSDDPKQLIANALAPATVIEVEILDKENRA 304
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343
V+VP QLSLAIG+ GQN RLA++LTGW IDI
Sbjct: 305 ARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340
>gi|94986976|ref|YP_594909.1| transcription elongation factor NusA [Lawsonia intracellularis
PHE/MN1-00]
gi|94731225|emb|CAJ54588.1| transcription elongation factor [Lawsonia intracellularis
PHE/MN1-00]
Length = 440
Score = 345 bits (886), Expect = 7e-93, Method: Composition-based stats.
Identities = 172/430 (40%), Positives = 265/430 (61%), Gaps = 5/430 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
LEL + D ++ +K +DRD+++ + D+++ + YG D+ V N +TG+I +++
Sbjct: 2 NLELKKALDQISKDKGLDRDMLVDTLEDAVRTSVIRRYGDNLDVEVSYNDDTGEIEVYQF 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVEEV + Q+S+ A+ DPS + + L D GR+A QSAKQVIIQ++R+A
Sbjct: 62 KIVVEEVTDPITQLSITEAKTHDPSAQLDDEMGFRLKVEDLGRIAAQSAKQVIIQRMRDA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
E++ Y E+KD++GEI+SG V+R + G I++LG ++ ++ +DE I +E+ + GDRV+
Sbjct: 122 EQEIIYEEYKDRIGEIVSGIVQRRDKGGWIINLGRTEALLPKDEQIPKEHYKRGDRVQGL 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I DVR+E RGPQV++SR H +M LF EVPE+ +G VQ+ V+RDPGSRAK+ V S +
Sbjct: 182 IIDVRKEGRGPQVIISRAHRDYMAALFRREVPEVDDGTVQIMGVARDPGSRAKVTVLSRE 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DPVGACVG+RGSR+Q +V EL E+IDIV+WSP+ T+ NAL PAI++++ +DE
Sbjct: 242 RDVDPVGACVGVRGSRIQNIVQELHGERIDIVIWSPEITTYARNALAPAIISRITVDETE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
+EV VP +QL+ AIGR+GQNV+LA++L GW IDI TE + + Q
Sbjct: 302 NLLEVTVPDDQLTSAIGRKGQNVKLAAKLLGWKIDIFTETRYNESNAVGR-----GLEQV 356
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425
+V EI L+ G +E++ E+ G E +++ +
Sbjct: 357 ASVAEISIETLLHSGLNTLEQINETSDEELIEKLGISESQVNDLRAAVNFLSTTATVDSN 416
Query: 426 KKIRELGVSE 435
KK +E+ +
Sbjct: 417 KKKKEVEAEQ 426
>gi|331090930|ref|ZP_08339772.1| transcription termination factor NusA [Lachnospiraceae bacterium
2_1_46FAA]
gi|330405152|gb|EGG84688.1| transcription termination factor NusA [Lachnospiraceae bacterium
2_1_46FAA]
Length = 368
Score = 345 bits (886), Expect = 8e-93, Method: Composition-based stats.
Identities = 146/341 (42%), Positives = 225/341 (65%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
ELL+ + EK I ++ +L + +S+ A ++ +G +I+V +N ET D S+F
Sbjct: 2 NTELLEALTILEQEKDISKETLLDAIENSLINACKNHFGKADNIKVIMNRETCDYSVFAE 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVE VE+ +ISL A+ D ++G +V P+ +FGR+A Q+AK +I+QK+RE
Sbjct: 62 KTVVENVEDDVMEISLANAKMIDSKFELGDIVQIPVESKEFGRIATQNAKNLILQKIREE 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y ++ +K +I++G V+R NV ++LG +D ++ +E + E +P +R+K Y
Sbjct: 122 ERKVVYDQYFEKEKDIVTGIVQRYVGKNVSINLGKADAMLTENEQVKGEVFKPTERIKLY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ +V+ +GP++L+SRTHP+ + +LF EV E+ +G V++K+++R+ GSR+K+AV+S+D
Sbjct: 182 VVEVKNTTKGPKILVSRTHPELVKRLFESEVAEVKDGTVEIKSIAREAGSRSKIAVWSND 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DPVGACVGM G+RV A+V ELR EKIDI+ WS + A + NAL PA V V+ D D
Sbjct: 242 PDVDPVGACVGMNGARVNAIVNELRGEKIDIINWSENPAILIENALSPAKVISVMADPDE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346
VIVP QLSLAIG+ GQN RLA++LTG+ IDI E +
Sbjct: 302 KTASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKNETQ 342
>gi|257413921|ref|ZP_04744677.2| transcription termination factor NusA [Roseburia intestinalis
L1-82]
gi|257201821|gb|EEV00106.1| transcription termination factor NusA [Roseburia intestinalis
L1-82]
Length = 425
Score = 345 bits (886), Expect = 9e-93, Method: Composition-based stats.
Identities = 155/413 (37%), Positives = 245/413 (59%), Gaps = 11/413 (2%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
++S N ELL+ + + EK+I +D +L + +S+ A ++ +G+ +++V I+PET +
Sbjct: 18 IMSNN--ELLEALNILEQEKNISKDTLLEAIENSLVTACKNHFGSSDNVKVSIDPETCEF 75
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
+F+ VVE VE+ QISL A+ + +IG VV+ + +FGR+A Q+AK VI+Q
Sbjct: 76 HVFQEKTVVETVEDPVEQISLVNAKMINSKYEIGDVVNIEVQSKEFGRIATQNAKNVILQ 135
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
K+RE ER Y ++ ++++G V+R NV ++LG D ++ +E + E +P +
Sbjct: 136 KIREEERKVLYDQYYSMEKDVVTGVVQRYVGRNVSINLGRVDAILTENEQVKGEVFQPTE 195
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
R+K YI +V+ +GP+VL+SRTHP+ + +LF EV E+ GIV++KA++R+ GSR K+A
Sbjct: 196 RIKVYILEVKATSKGPKVLVSRTHPELVKRLFESEVAEVREGIVEIKAIAREAGSRTKIA 255
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V+S+D +DPVGACVGM G+RV A+V ELR EKIDI+ W+ + A + NAL PA V V+
Sbjct: 256 VWSNDPDVDPVGACVGMNGARVNAIVGELRGEKIDIITWNENPAMMIENALSPAKVISVI 315
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
D + +V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + + E
Sbjct: 316 ADAEEKSAKVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSETQARESGDFLDYENDY 375
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413
+ + D E E + ++ + A E A
Sbjct: 376 EEDEYYDEDGGSYEE---------YEDGSAPAEEGYEEDSYETDGAEENNAEA 419
>gi|260589530|ref|ZP_05855443.1| transcription termination factor NusA [Blautia hansenii DSM 20583]
gi|260540098|gb|EEX20667.1| transcription termination factor NusA [Blautia hansenii DSM 20583]
Length = 384
Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats.
Identities = 144/344 (41%), Positives = 222/344 (64%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
ELL+ + + EKSI +D +L + S+ +A ++ +G +I+V INPET D +
Sbjct: 2 NTELLEALNILEKEKSISKDTLLEAIEQSLIQACKNHFGKADNIKVNINPETCDFGVLAE 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVEEV + +ISL A+ + +G +V+ + +FGR+A Q+AK VI+QK+RE
Sbjct: 62 KTVVEEVYDPVTEISLADAKMMNSQYGLGDIVNVEIKSKEFGRIATQNAKNVILQKIREE 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER + ++ K ++++G V+R N ++LG +D ++ +E + E +P +R+K Y
Sbjct: 122 ERKVIFDQYYGKEKDVVTGIVQRSLGRNYSINLGKADAILTENEQVKTEVFKPTERIKVY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I +V+ +GP++++SRTHP+ + +LF EV EI +G V+VK+++R+ GSR K+AV+S+D
Sbjct: 182 ILEVKDAPKGPKIMVSRTHPELVKRLFEAEVTEIKDGTVEVKSIAREAGSRTKIAVWSND 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DPVGACVG+ G+RV +VV ELR EKIDI+ WS + A + NAL PA V V D +
Sbjct: 242 PDVDPVGACVGINGARVNSVVEELRGEKIDIINWSDNPALLIENALSPAKVISVTADPEE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E +
Sbjct: 302 KSATVIVPDFQLSLAIGKEGQNARLAARLTGFKIDIKSETQARE 345
>gi|313608989|gb|EFR84731.1| transcription termination factor NusA [Listeria monocytogenes FSL
F2-208]
Length = 330
Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats.
Identities = 140/327 (42%), Positives = 215/327 (65%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E
Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 AVEQVFDSRLEISMEEAHKLNPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+
Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++
Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E
Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQL 334
VIVP QLSLAIG+RGQN RLA++L
Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKL 330
>gi|222055779|ref|YP_002538141.1| NusA antitermination factor [Geobacter sp. FRC-32]
gi|221565068|gb|ACM21040.1| NusA antitermination factor [Geobacter sp. FRC-32]
Length = 380
Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats.
Identities = 176/353 (49%), Positives = 238/353 (67%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
L D + EK ID+DVVL + ++ AA + D+ NPE G++ LF
Sbjct: 4 NFNLKHTIDQIVKEKGIDKDVVLEALEQAVLTAANKKFRNTRDLEAHYNPEIGEVELFEF 63
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+ VV+EV++ +I L AR+ DP +++G + + F R+A Q+AKQVIIQKVREA
Sbjct: 64 VTVVDEVQDSYKEIDLDEAREIDPEVEVGDSLGMKMDASGFSRIAAQTAKQVIIQKVREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER+ + EF+++ GE+I+G V+R E G+++VDLG ++ ++ E RE R GDRVK+
Sbjct: 124 ERETIFNEFQERQGEVINGVVRRFEKGDLVVDLGRAEALLSHKEQAPREVYRQGDRVKAL 183
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I ++R +GPQ+LLSRTHP + KLF EVPEI GIV+VK V R+PGSRAK+AV+S D
Sbjct: 184 ITEIRMTTKGPQILLSRTHPMMLAKLFEAEVPEIAEGIVEVKNVVREPGSRAKIAVYSHD 243
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
S +DPVGACVGMRGSRVQ VV+ELR EKIDI+ WS D A F NAL PA+V+KV +DED
Sbjct: 244 SDVDPVGACVGMRGSRVQNVVSELRGEKIDIIPWSEDVARFACNALAPAVVSKVYVDEDN 303
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
+E++V +QLSLAIG+RGQNVRLA++LTGW IDI +E + F
Sbjct: 304 RAMEIVVADDQLSLAIGKRGQNVRLAAKLTGWRIDIKSETRVAEAELLQFASY 356
>gi|95929628|ref|ZP_01312370.1| NusA antitermination factor [Desulfuromonas acetoxidans DSM 684]
gi|95134325|gb|EAT15982.1| NusA antitermination factor [Desulfuromonas acetoxidans DSM 684]
Length = 388
Score = 345 bits (884), Expect = 1e-92, Method: Composition-based stats.
Identities = 166/345 (48%), Positives = 240/345 (69%)
Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71
+ D V +K +DRD+++ + ++ AA Y ++ N E G++ LF + VV+E
Sbjct: 8 VIDQVVKDKGVDRDILVEALESAVLSAANKKYRNTRELEAHYNTEQGEVELFEFVTVVDE 67
Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131
V++ +I L+ AR+ DP ++ G + + F R+A Q+AKQVIIQKVREAER+ Y
Sbjct: 68 VQDSYKEIDLEEAREIDPDVECGDSLGMKMDSGSFSRIAAQTAKQVIIQKVREAEREGVY 127
Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRR 191
EFKD+VGE+++G V+R E G++IVDLG ++ ++ E + REN R DRV++YI +V+
Sbjct: 128 NEFKDRVGELVNGIVRRYERGDLIVDLGRAEALLPHREQVPRENYRQADRVRAYIAEVKM 187
Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPV 251
+GPQ++LSRTHP +++LF EVPEI GIV++ + SR+PGSRAK+AV S D +DPV
Sbjct: 188 SPKGPQIILSRTHPSLVIELFKTEVPEISEGIVEIVSCSREPGSRAKIAVVSHDPDVDPV 247
Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVI 311
GACVGMRGSRVQ VV+ELR EKIDI+ W+PD A F +AL PA V++V +D + +E+I
Sbjct: 248 GACVGMRGSRVQNVVSELRGEKIDIIPWTPDMARFACSALAPADVSRVYVDNEEQAMEII 307
Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356
VP +QLSLAIG++GQNVRLA++L GW IDI +E + Q++
Sbjct: 308 VPDDQLSLAIGKKGQNVRLAARLIGWKIDIKSETRAAEIEQEENR 352
>gi|310658997|ref|YP_003936718.1| transcription translation coupling factor [Clostridium sticklandii
DSM 519]
gi|308825775|emb|CBH21813.1| transcription translation coupling factor involved in Rho-dependent
transcription termination [Clostridium sticklandii]
Length = 357
Score = 345 bits (884), Expect = 1e-92, Method: Composition-based stats.
Identities = 143/355 (40%), Positives = 230/355 (64%), Gaps = 12/355 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E + + + EK I ++++ + ++ A + +GT S++RVE++ + G++ +F
Sbjct: 2 NAEFIAALEQIETEKGISKEILFEALESALLNAYKKNFGTSSNVRVEMDKDKGEVKVFSR 61
Query: 66 LEVVEEVENY--TCQISLKVARDRD-PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
VV + E +IS++ A++R P+ G V+ + + P +FGR+A Q+A+Q++IQK+
Sbjct: 62 KSVVNKYEYDLGEGEISVEEAQERYGPNYGDGDVIEEEVTPKNFGRIAAQAARQMVIQKI 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG---------NSDGVIRRDETISR 173
+EAERD Y EF ++ EII+G V R GNV V+L +++ V+ E I
Sbjct: 122 KEAERDIVYEEFLNRESEIITGEVSRQGKGNVYVNLSIIGSKDITISAEAVLPPSEQIPF 181
Query: 174 ENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDP 233
EN PG RVK Y+ +V++ PQ+L+SR+HP + +LF EVPEI++G+VQ+K++SR+
Sbjct: 182 ENYMPGARVKVYVLEVKKNNNVPQILVSRSHPGLVKRLFESEVPEIFDGVVQIKSISREA 241
Query: 234 GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP 293
GSR K+AV S D ++DP+GACVG +G RV+ +V EL+ EKIDI+++S D F+ +L P
Sbjct: 242 GSRTKMAVHSVDENVDPIGACVGPKGQRVKNIVDELKGEKIDIIIYSEDPKEFISASLSP 301
Query: 294 AIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
+ V V ++ED +V+VP ++LSLAIG+ GQN RLA++LTGW IDI +E +
Sbjct: 302 SKVISVDVNEDDKSAKVVVPDDKLSLAIGKEGQNARLAAKLTGWKIDIKSESQAE 356
>gi|39996686|ref|NP_952637.1| transcription elongation factor NusA [Geobacter sulfurreducens PCA]
gi|39983567|gb|AAR34960.1| N utilization substance protein A [Geobacter sulfurreducens PCA]
gi|298505697|gb|ADI84420.1| transcription elongation factor NusA [Geobacter sulfurreducens
KN400]
Length = 385
Score = 345 bits (884), Expect = 1e-92, Method: Composition-based stats.
Identities = 173/350 (49%), Positives = 244/350 (69%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
L I D + EK IDR +V+ + ++ AA + D+ NPE G++ LF + V
Sbjct: 7 LKHIIDQIVKEKGIDRHIVVEALEQAVLTAANKKFRNTRDLEAHYNPEVGEVELFEFVTV 66
Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
V+EV++ +I ++ AR+ DP +++G + L F R+A Q+AKQVIIQKVREAER+
Sbjct: 67 VDEVQDSYKEIDMEEAREIDPDVEVGDSLGMKLDASGFTRIAAQTAKQVIIQKVREAERE 126
Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
+ EFKD++GE+++G V+R E G++++DLG ++ V+ E RE R GDRVK+ I D
Sbjct: 127 TIFNEFKDRIGELVTGVVRRFEKGDLVIDLGRAEAVLSHKEQAPREVYRQGDRVKTLITD 186
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
+R +GPQ++LSRTHP + KLF EVPEI GIV++KAV R+PGSRAK+AV+S DS +
Sbjct: 187 IRMTPKGPQIVLSRTHPGVLAKLFEAEVPEIAEGIVEIKAVVREPGSRAKIAVYSHDSDV 246
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308
DPVGACVGMRGSRVQ VV+ELR EKIDI+ WS D+A F NAL+PA+V+KV +D++ +
Sbjct: 247 DPVGACVGMRGSRVQNVVSELRGEKIDIIPWSDDAARFACNALQPAVVSKVYIDDENRSM 306
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
E+IV +QLSLAIG++GQNVRLA++LTGW IDI +E + ++
Sbjct: 307 EIIVADDQLSLAIGKKGQNVRLAAKLTGWRIDIKSETTAAEAELLQYSSY 356
>gi|302670327|ref|YP_003830287.1| transcription termination factor NusA [Butyrivibrio proteoclasticus
B316]
gi|302394800|gb|ADL33705.1| transcription termination factor NusA [Butyrivibrio proteoclasticus
B316]
Length = 384
Score = 345 bits (884), Expect = 1e-92, Method: Composition-based stats.
Identities = 134/351 (38%), Positives = 215/351 (61%), Gaps = 3/351 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
EL+ D + EK+I +D + + +S+ A ++ +G +IRVE++ D + E
Sbjct: 4 ELMDALDLLEKEKNISKDSLFDAIENSLITACKNNFGKADNIRVEVDRNNCDFKCYADKE 63
Query: 68 VVE---EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VVE +V + +ISL A+ +G +V+ L +FGR+A Q+AK VI+QK+RE
Sbjct: 64 VVETADDVMDPQIEISLDDAKKISKKAKVGDIVAVSLNSKEFGRIATQNAKNVILQKIRE 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
ER Y E+ +K +I++G V+R N+ ++LG +D ++ +E + E RP R++
Sbjct: 124 EERGAIYNEYFEKEHDIVTGVVQRFIGKNISINLGRADAILNENEQVKGEVYRPTQRLRV 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
Y+ +V+ +GP++L+SRTHP + +LF EV EI +G V++K+++R+ GSR K+AV+S+
Sbjct: 184 YVLEVKNGSKGPRILVSRTHPDLVKRLFEQEVAEIQDGTVEIKSIAREAGSRTKIAVYST 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
+ ++D VGACVG+ G+RV +V EL EKID++ W + + NAL PA + V D D
Sbjct: 244 NPNVDAVGACVGVNGARVNLIVDELGGEKIDVINWDENPGNLIQNALSPAKIVAVFADPD 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355
+V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E +
Sbjct: 304 EKSAKVVVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQAKDAPGFRM 354
>gi|253701581|ref|YP_003022770.1| transcription elongation factor NusA [Geobacter sp. M21]
gi|251776431|gb|ACT19012.1| NusA antitermination factor [Geobacter sp. M21]
Length = 382
Score = 345 bits (884), Expect = 1e-92, Method: Composition-based stats.
Identities = 174/350 (49%), Positives = 237/350 (67%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
L D + EK ID+ +V+ + ++ AA + D+ NPE G++ LF + V
Sbjct: 7 LKHTIDQIVKEKGIDKSIVVEALEQAVLTAANKKFRNTRDLEAHYNPEEGEVELFEFVTV 66
Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
VEEV++ +I L AR+ DP ++IG + + F R+A Q+AKQVIIQ+VREAER+
Sbjct: 67 VEEVQDSYREIELDEAREEDPEVEIGDSIGMKMDASGFSRIAAQTAKQVIIQRVREAERE 126
Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
+ EF ++ GEI++G V+R E G++IVDLG ++ ++ E RE R GDRVK+ I +
Sbjct: 127 TIFNEFMERQGEIVNGVVRRFEKGDLIVDLGRAEALLPHKEQAPREVYRQGDRVKALITE 186
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
+R +GPQ++LSRTHP + KLF EVPEI GIV++K+V R+PG RAK+AV+S DS +
Sbjct: 187 IRMTTKGPQIMLSRTHPTMLAKLFEAEVPEIAEGIVEIKSVVREPGGRAKIAVYSHDSDV 246
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308
DPVGACVGMRGSRVQ VV+ELR EKIDI+ WS D A F NAL PA+VTKV +DE+ +
Sbjct: 247 DPVGACVGMRGSRVQNVVSELRGEKIDIIPWSEDIARFACNALAPAVVTKVYVDEEEYAM 306
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
EVIV +QLSLAIG+RGQNVRLA++LTGW IDI +E + + F
Sbjct: 307 EVIVADDQLSLAIGKRGQNVRLAAKLTGWKIDIKSETRMAEAELQQFASY 356
>gi|323485570|ref|ZP_08090915.1| hypothetical protein HMPREF9474_02666 [Clostridium symbiosum
WAL-14163]
gi|323692918|ref|ZP_08107141.1| transcription termination factor NusA [Clostridium symbiosum
WAL-14673]
gi|323401109|gb|EGA93462.1| hypothetical protein HMPREF9474_02666 [Clostridium symbiosum
WAL-14163]
gi|323503025|gb|EGB18864.1| transcription termination factor NusA [Clostridium symbiosum
WAL-14673]
Length = 412
Score = 345 bits (884), Expect = 2e-92, Method: Composition-based stats.
Identities = 155/412 (37%), Positives = 242/412 (58%), Gaps = 14/412 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
EL++ + + E +I +D++L + +S+ A ++ +G +++V IN ETGD S++
Sbjct: 2 NKELIEALNVLEKENNISKDILLEAIENSLLTACKNHFGKADNVKVTINRETGDFSVYAE 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
EVVE VE+ QISL A+ + D+G +V + +FGR+A Q+AK VI+QK+RE
Sbjct: 62 KEVVESVEDPMLQISLAEAKMMNGRYDLGDIVHVQINSKEFGRIATQNAKNVILQKIREE 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER + ++ K ++++G V+R N+ +DLG D ++ E + E +P +R+K Y
Sbjct: 122 ERKALFNDWYCKEKDVVTGIVQRYVNRNICIDLGKIDAILNESEQVKGEVFKPTERIKLY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ +V+ +GP++ +SRTHP + +LF EV E+ +G V++KA++R+ GSR K+AV+S++
Sbjct: 182 VLEVKDTNKGPRITVSRTHPDLVKRLFESEVAEVKDGTVEIKAIAREAGSRTKIAVYSNN 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DPVGACVG+ G+RV A+V+ELR EKIDI+ W + A + NAL PA V V DED
Sbjct: 242 PDVDPVGACVGLNGARVNAIVSELRGEKIDIINWDENPAYLIENALSPAKVIFVAADEDA 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE-------------DSINRQ 352
+VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + +
Sbjct: 302 REAQVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQARESGLLDDLELGYEQGFE 361
Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404
E F + DE A F DV + A + E E + E+
Sbjct: 362 GYAEEPFDSFSEEAGADENHAEEDGTAAFGDV-DFAGNEAEEGLGEENYQEQ 412
>gi|210612465|ref|ZP_03289323.1| hypothetical protein CLONEX_01524 [Clostridium nexile DSM 1787]
gi|210151573|gb|EEA82580.1| hypothetical protein CLONEX_01524 [Clostridium nexile DSM 1787]
Length = 373
Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats.
Identities = 156/372 (41%), Positives = 235/372 (63%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
ELL+ + EK I ++ +L + +S+ A ++ +G +I+V +N ET D S+F
Sbjct: 2 NTELLEALTILEQEKDISKETLLDAIENSLINACKNHFGKADNIKVVMNRETCDYSVFAE 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVEEVE+ +ISL A+ D ++G +V P+ +FGR+A Q+AK +I+QK+RE
Sbjct: 62 KTVVEEVEDDVMEISLANAKMIDSKFELGDIVQIPVESKEFGRIATQNAKNLILQKIREE 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y ++ +K +I++G V+R NV ++LG +D ++ +E + E +P +R+K Y
Sbjct: 122 ERKVVYDQYFEKEKDIVTGIVQRYVGKNVSINLGKADAMLTENEQVKGEVFKPTERIKLY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I +V+ +GP++L+SRTHP+ + +LF EV E+ GIV++K++SR+ GSR K+AV+S+D
Sbjct: 182 IVEVKNTTKGPKILVSRTHPELVKRLFESEVAEVKEGIVEIKSISREAGSRTKIAVWSND 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DPVGACVGM G+RV A+V+ELR EKIDI+ WS + A + NAL PA V V+ D D
Sbjct: 242 PDVDPVGACVGMNGARVNAIVSELRGEKIDIINWSDNPAILIENALSPAKVISVMADPDE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + + N +
Sbjct: 302 KTASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQAIEAGELPENYMNLSTEVS 361
Query: 366 INVDEIIAHLLV 377
DE I LV
Sbjct: 362 EEADEEIPDELV 373
>gi|295396943|ref|ZP_06807065.1| transcription termination factor NusA [Aerococcus viridans ATCC
11563]
gi|294974796|gb|EFG50501.1| transcription termination factor NusA [Aerococcus viridans ATCC
11563]
Length = 447
Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats.
Identities = 156/443 (35%), Positives = 248/443 (55%), Gaps = 4/443 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ +A+ EK I ++V+L + ++ A + Y ++ V + + G I ++ + E
Sbjct: 4 EMLRAFEALEDEKGISKEVILEALEAALVSAYKRNYQQAQNVEVNFDVKKGSIEVYAVKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+ V + ++SL+ A + + +IG + + P DFGR+A Q+AKQVI+Q+VREAER
Sbjct: 64 VVDLVMDSQLEVSLEDAHHLNSAYEIGDKIKFEVTPKDFGRIAAQTAKQVIMQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y E+ D +I++G V+R + V V LG + VI + I E +P +RV+ Y+
Sbjct: 124 SIIYNEYIDYEDDILTGIVERQDRRYVYVSLGKIEAVIPPEGQIPNETFQPHERVQVYVE 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +GPQV +SR+HP + +LF EVPEI++G V++KA++R+ G R+K+AV S+D++
Sbjct: 184 RVENTTKGPQVYVSRSHPSLLKRLFEQEVPEIFDGTVEIKAIAREAGDRSKVAVVSNDAN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
ID VG CVG RGSRVQ +V EL+ E +DIV WS D ATF+ NAL PA V V
Sbjct: 244 IDAVGTCVGPRGSRVQRIVDELKGENMDIVQWSDDMATFISNALNPADVLSVHFVPGETS 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN--ERTQFFMQA 365
V+VP+ LSLAIG+RGQN RLA++LT IDI +E + Q + + +
Sbjct: 304 CVVVVPENHLSLAIGKRGQNARLAAKLTNHKIDIKSEADFEAYIQTEEYAERFAEKVLVD 363
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425
+VD I+A + + +V I E + D E + ++ ++
Sbjct: 364 EDVDPILAGDIESAEEYEVVTEGSTSIDEEDLLAMDDLEEGNVGPEAIEDQIDDVEGEDN 423
Query: 426 KKIRELGV--SEELCSIPGIDSK 446
I + + E+L ++ +
Sbjct: 424 DIIDDEALIGEEDLDQQERLNQE 446
>gi|291536069|emb|CBL09181.1| transcription termination factor NusA [Roseburia intestinalis
M50/1]
Length = 402
Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats.
Identities = 153/403 (37%), Positives = 239/403 (59%), Gaps = 9/403 (2%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
ELL+ + + EK+I +D +L + +S+ A ++ +G+ +++V I+PET + +F+
Sbjct: 3 NNELLEALNILEQEKNISKDTLLEAIENSLVTACKNHFGSSDNVKVSIDPETCEFHVFQE 62
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVE VE+ QISL A+ + +IG VV+ + +FGR+A Q+AK VI+QK+RE
Sbjct: 63 KTVVETVEDPVEQISLVNAKMINSKYEIGDVVNIEVQSKEFGRIATQNAKNVILQKIREE 122
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y ++ ++++G V+R NV ++LG D ++ +E + E +P +R+K Y
Sbjct: 123 ERKVLYDQYYSMEKDVVTGVVQRYVGRNVSINLGRVDAILTENEQVKGEVFQPTERIKVY 182
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I +V+ +GP+VL+SRTHP+ + +LF EV E+ GIV++KA++R+ GSR K+AV+S+D
Sbjct: 183 ILEVKATSKGPKVLVSRTHPELVKRLFESEVAEVREGIVEIKAIAREAGSRTKIAVWSND 242
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DPVGACVGM G+RV A+V ELR EKIDI+ W+ + A + NAL PA V V+ D +
Sbjct: 243 PDVDPVGACVGMNGARVNAIVGELRGEKIDIITWNENPAMMIENALSPAKVISVIADAEE 302
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
+V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + + E +
Sbjct: 303 KSAKVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSETQARESGDFLDYENDYEEDEY 362
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408
+ D E E +G +E A
Sbjct: 363 YDEDGGSYEE---------YEDGSAPAEESYETDGAEENNAEA 396
>gi|242278479|ref|YP_002990608.1| transcription elongation factor NusA [Desulfovibrio salexigens DSM
2638]
gi|242121373|gb|ACS79069.1| NusA antitermination factor [Desulfovibrio salexigens DSM 2638]
Length = 456
Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats.
Identities = 170/434 (39%), Positives = 269/434 (61%), Gaps = 5/434 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
EL + D ++ ++ IDRD+++ + ++++ + YG DI V N + G+I +++
Sbjct: 4 ELKKAIDQISKDRGIDRDLLIDTLEEAVRSSVARKYGDAMDIEVNFNEDAGEIEVYQFKV 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
V EEVE+ +I+L+ A++ DP++ I + L D GR+A QSAKQVIIQ++R+AE+
Sbjct: 64 VAEEVEDEISEITLEEAKEHDPNVQIDDEMGFKLKVEDLGRIAAQSAKQVIIQRMRDAEQ 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y EFK+++ EI+SG ++R + I++LG ++ V+ + E I RE + GDRV+++I
Sbjct: 124 EIIYDEFKNRMHEIVSGIIQRRDRTGWIINLGRTEAVLPKGEQIPRERYKRGDRVQAFII 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
DV++E RGPQ+ +SR+HP +M LF EVPE+ + V++ V+RDPG RAK+AV S D
Sbjct: 184 DVQKESRGPQITVSRSHPDYMTALFKREVPEVDDATVKIMGVARDPGLRAKVAVNSLDRD 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVGACVG+RGSR+Q +V ELR E+IDIVVWS D A + NAL PA++T++ +DE+
Sbjct: 244 VDPVGACVGIRGSRIQNIVQELRGERIDIVVWSQDIAMYAQNALSPAVITRIAVDEEEKT 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
+EV+VP +QL++AIGR+GQNV+LAS+L GW ID+ TE R + N ++ Q +
Sbjct: 304 LEVVVPDDQLTVAIGRKGQNVKLASRLLGWKIDVFTES-----RYGEMNAASKGLDQLAS 358
Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427
V EI ++ GF V ++A + SI G +++ G ++
Sbjct: 359 VAEIPVDNFLSAGFETVSQVANASEEILMSISGMTPSKVSDMKSAIMLLGIGDAEDAVEE 418
Query: 428 IRELGVSEELCSIP 441
E +
Sbjct: 419 TETEAPVEAEAQVE 432
>gi|197117688|ref|YP_002138115.1| transcription elongation factor NusA [Geobacter bemidjiensis Bem]
gi|197087048|gb|ACH38319.1| transcription termination factor NusA [Geobacter bemidjiensis Bem]
Length = 383
Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats.
Identities = 174/350 (49%), Positives = 237/350 (67%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
L D + EK ID+ +V+ + ++ AA + D+ NPE G++ LF + V
Sbjct: 7 LKHTIDQIVKEKGIDKSIVVEALEQAVLTAANKKFRNTRDLEAHYNPEEGEVELFEFVTV 66
Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
VEEV++ +I L AR+ DP ++IG + + F R+A Q+AKQVIIQ+VREAER+
Sbjct: 67 VEEVQDSYREIELDEAREEDPEVEIGDSIGMKMDASGFSRIAAQTAKQVIIQRVREAERE 126
Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
+ EF ++ GEI++G V+R E G++IVDLG ++ ++ E RE R GDRVK+ I +
Sbjct: 127 TIFNEFMERQGEIVNGVVRRFEKGDLIVDLGRAEALLPHKEQAPREVYRQGDRVKALITE 186
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
+R +GPQ++LSRTHP + KLF EVPEI GIV++K+V R+PG RAK+AV+S DS +
Sbjct: 187 IRMTTKGPQIMLSRTHPTMLAKLFEAEVPEIAEGIVEIKSVVREPGGRAKIAVYSHDSDV 246
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308
DPVGACVGMRGSRVQ VV+ELR EKIDI+ WS D A F NAL PA+VTKV +DE+ +
Sbjct: 247 DPVGACVGMRGSRVQNVVSELRGEKIDIIPWSEDIARFACNALAPAVVTKVYVDEEEYAM 306
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
EVIV +QLSLAIG+RGQNVRLA++LTGW IDI +E + + F
Sbjct: 307 EVIVADDQLSLAIGKRGQNVRLAAKLTGWKIDIKSETRMAEAELQQFASY 356
>gi|188586067|ref|YP_001917612.1| NusA antitermination factor [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179350754|gb|ACB85024.1| NusA antitermination factor [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 380
Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats.
Identities = 142/356 (39%), Positives = 230/356 (64%), Gaps = 1/356 (0%)
Query: 18 YEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTC 77
+K I++D++ + ++ A + + + ++RV + ETGD+ ++ +VVEEVEN
Sbjct: 14 RDKGINKDILFEAIEAALISAYKRNFDSDKNVRVHMERETGDVRVYHQKQVVEEVENPKE 73
Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137
QISL+ AR P ++ +V + + P +FGR+A Q+AKQV+IQ++REAER+ Y E+ DK
Sbjct: 74 QISLEEARKISPGYEVDDLVEEEVTPKNFGRIAAQTAKQVVIQRIREAERELIYEEYVDK 133
Query: 138 VGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197
+II+G V+R+E NVI+DLG + ++ E + + GDR+K+Y+ +V++ + PQ
Sbjct: 134 QDDIINGIVQRIEQKNVIIDLGKVEAILPPQEQMDTDEYNQGDRIKAYVVEVKKTTKEPQ 193
Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGM 257
++LSRTHP + +L +EVPEIY+G V++K ++R+ G R+K+AV+S +DPVG+CVG
Sbjct: 194 IILSRTHPGLIKRLLELEVPEIYDGTVEIKGIAREAGYRSKVAVYSRHEEVDPVGSCVGN 253
Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQ 316
+GSR+Q++V EL+ E ID++ WS D F+ N+L P+ V +V + DE + V+VP Q
Sbjct: 254 KGSRIQSIVDELKGENIDVITWSSDPVVFISNSLSPSKVLEVKVLDEQDQKARVVVPDHQ 313
Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEII 372
LSLAIG+ GQN RLA++LT W IDI++E + + + A +
Sbjct: 314 LSLAIGKEGQNARLAAKLTNWKIDILSESQLAEKGESSVEVEDFVEESASPEEPDN 369
>gi|170288839|ref|YP_001739077.1| NusA antitermination factor [Thermotoga sp. RQ2]
gi|281412459|ref|YP_003346538.1| NusA antitermination factor [Thermotoga naphthophila RKU-10]
gi|170176342|gb|ACB09394.1| NusA antitermination factor [Thermotoga sp. RQ2]
gi|281373562|gb|ADA67124.1| NusA antitermination factor [Thermotoga naphthophila RKU-10]
Length = 344
Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats.
Identities = 140/336 (41%), Positives = 223/336 (66%), Gaps = 1/336 (0%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
LL+ D + EK I ++ V+ ++ ++ A R +G ++ V I+ TG+I +++LLEV
Sbjct: 5 LLEALDQLEEEKGISKEEVIPILEKALVSAYRKNFGNSKNVEVVIDRNTGNIRVYQLLEV 64
Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
VEEVE+ QISL+ A+ DP ++G +V L +FGR+A Q+AKQV+IQ++RE E++
Sbjct: 65 VEEVEDPATQISLEEAKKIDPLAEVGSIVKKELNVKNFGRIAAQTAKQVLIQRIRELEKE 124
Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
+Q+ ++ + G + + V RV + +G + + + E I E ++ GD VK YI D
Sbjct: 125 KQFEKYSELKGTVTTAEVIRVTSEWADIRIGKLETRLPKKEWIPGEEIKAGDLVKVYIID 184
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V + +GP++L+SR P+F++ L +E+PE+ NGIV++KA++R+PG R K+AV S+D ++
Sbjct: 185 VVKTTKGPKILVSRRVPEFVIGLMKLEIPEVENGIVEIKAIAREPGVRTKVAVASNDPNV 244
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307
DP+GAC+G GSR+ A++ EL+ EK+D++ WS D + NAL PA V +V + D++
Sbjct: 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKWSDDPKQLIANALAPATVIEVEILDKENKA 304
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343
V+VP QLSLAIG+ GQN RLA++LTGW IDI
Sbjct: 305 ARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340
>gi|15644522|ref|NP_229574.1| transcription elongation factor NusA [Thermotoga maritima MSB8]
gi|16975175|pdb|1HH2|P Chain P, Crystal Structure Of Nusa From Thermotoga Maritima
gi|4982355|gb|AAD36840.1|AE001815_14 N utilization substance protein A [Thermotoga maritima MSB8]
Length = 344
Score = 344 bits (882), Expect = 3e-92, Method: Composition-based stats.
Identities = 140/336 (41%), Positives = 223/336 (66%), Gaps = 1/336 (0%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
LL+ D + EK I ++ V+ ++ ++ A R +G ++ V I+ TG+I +++LLEV
Sbjct: 5 LLEALDQLEEEKGISKEEVIPILEKALVSAYRKNFGNSKNVEVVIDRNTGNIKVYQLLEV 64
Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
VEEVE+ QISL+ A+ DP ++G +V L +FGR+A Q+AKQV+IQ++RE E++
Sbjct: 65 VEEVEDPATQISLEEAKKIDPLAEVGSIVKKELNVKNFGRIAAQTAKQVLIQRIRELEKE 124
Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
+Q+ ++ + G + + V RV + +G + + + E I E ++ GD VK YI D
Sbjct: 125 KQFEKYSELKGTVTTAEVIRVMGEWADIRIGKLETRLPKKEWIPGEEIKAGDLVKVYIID 184
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V + +GP++L+SR P+F++ L +E+PE+ NGIV++KA++R+PG R K+AV S+D ++
Sbjct: 185 VVKTTKGPKILVSRRVPEFVIGLMKLEIPEVENGIVEIKAIAREPGVRTKVAVASNDPNV 244
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307
DP+GAC+G GSR+ A++ EL+ EK+D++ WS D + NAL PA V +V + D++
Sbjct: 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKWSDDPKQLIANALAPATVIEVEILDKENKA 304
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343
V+VP QLSLAIG+ GQN RLA++LTGW IDI
Sbjct: 305 ARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340
>gi|189219874|ref|YP_001940515.1| transcription elongation factor [Methylacidiphilum infernorum V4]
gi|189186732|gb|ACD83917.1| Transcription elongation factor [Methylacidiphilum infernorum V4]
Length = 441
Score = 344 bits (882), Expect = 3e-92, Method: Composition-based stats.
Identities = 161/412 (39%), Positives = 259/412 (62%), Gaps = 2/412 (0%)
Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
A E+L I + + EK I+R V + M ++ AA+ G D+RVEI+P+TG I++
Sbjct: 23 AMNQEVLAIMEYMEKEKGINRQVFIEAMQSALLAAAKKSIGPARDLRVEIHPKTGRINVR 82
Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
LEVVE+V+N QISLK AR+ DP+++IG +V + P DFGR+A Q KQ I Q ++
Sbjct: 83 AKLEVVEKVQNSHDQISLKRAREIDPNVNIGDLVEVEVTPKDFGRIAAQVFKQTINQALK 142
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183
ER EFKD++ I+SGT++R+E ++I+DLG +G++ E + E G+R+K
Sbjct: 143 GIERKMVLSEFKDRINNIVSGTIRRIERSDIIIDLGRYEGIMPFKERVPTEEYVVGERIK 202
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+Y+ V GP ++LSR+HP F+++L +EV E+ + IV+VKA++R+PG R K+AV+S
Sbjct: 203 AYVLSVDDTPHGPMIILSRSHPNFILRLLELEVSEVADKIVEVKAIAREPGFRTKIAVWS 262
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
S+ IDPVG+CVG+RG+RV+ +V EL EKID+ WSP+ I AL+PA V KV +D+
Sbjct: 263 SNPKIDPVGSCVGVRGARVKNIVRELHSEKIDLFKWSPNVEELAIEALKPAKVKKVEVDQ 322
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
R++V V +E S+A+G++G+N LAS++ GW IDI+ E ++ + M
Sbjct: 323 QNHRVKVTVDEENYSIALGKKGKNAWLASKIVGWDIDIVKEPSFVVDNFTQKITKAAEEM 382
Query: 364 -QAINVDEIIAHLLVAEGFADVEELACVKISE-IASIEGFDEETAVEIQGRA 413
++ +D+ +A +V GF + E +A + + ++++ D + ++ A
Sbjct: 383 ASSLAIDQSVAEQIVRAGFINPEAVAESEEEDLMSALPELDPQLIHRLKEAA 434
>gi|317500433|ref|ZP_07958657.1| transcription termination factor NusA [Lachnospiraceae bacterium
8_1_57FAA]
gi|331089560|ref|ZP_08338459.1| transcription termination factor NusA [Lachnospiraceae bacterium
3_1_46FAA]
gi|316898188|gb|EFV20235.1| transcription termination factor NusA [Lachnospiraceae bacterium
8_1_57FAA]
gi|330404928|gb|EGG84466.1| transcription termination factor NusA [Lachnospiraceae bacterium
3_1_46FAA]
Length = 404
Score = 344 bits (882), Expect = 3e-92, Method: Composition-based stats.
Identities = 140/356 (39%), Positives = 233/356 (65%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
EL++ + EK+I +DV++ + +S+ A ++ +GT +I+V ++ +T D +++
Sbjct: 2 NTELMEALTILEKEKNISKDVMMDAIENSLISACKNHFGTSDNIKVIMDRDTCDYAVYAE 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVEEVE+ +ISL+ A D ++ +G + P+ +FGR+A Q+AK +I+QK+RE
Sbjct: 62 KNVVEEVEDPALEISLEEAEKLDSALQVGDIAQIPVHSKEFGRIATQNAKNLILQKIREE 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER + ++ +K +I++G V+R N+ ++LG +D ++ +E + E+ +P +R+K Y
Sbjct: 122 ERKVVFDQYFEKEKDIVTGVVQRYVGKNISINLGRADAMLTENEQVKGEHFKPTERIKLY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ +V+ +GP++L+SRTHP+ + +LF EV E+ +G V++K+++R+ GSR K+AV+S+D
Sbjct: 182 VVEVKNTPKGPKILVSRTHPELVKRLFEAEVAEVRDGTVEIKSIAREAGSRTKMAVWSND 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
++DPVGACVGM G+RV AVV ELR EKIDI+ W + A + N+L PA V V+ D +
Sbjct: 242 PNVDPVGACVGMNGARVNAVVQELRGEKIDIINWDENPALLIENSLSPAKVISVMADPEE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + + N +
Sbjct: 302 KIASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQAIEAGELPENYMEEM 357
>gi|302392348|ref|YP_003828168.1| NusA antitermination factor [Acetohalobium arabaticum DSM 5501]
gi|302204425|gb|ADL13103.1| NusA antitermination factor [Acetohalobium arabaticum DSM 5501]
Length = 376
Score = 343 bits (881), Expect = 3e-92, Method: Composition-based stats.
Identities = 162/369 (43%), Positives = 248/369 (67%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+EL+Q + + +K+I ++++L + +++ A + +G+ ++ +EI+ E G+++++
Sbjct: 2 NIELIQALEDIEKDKNIPKEMLLDALKAALESAYKKNFGSKQNVEIEIDEENGEVNVYSN 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
EVV+EV+N ++SL+ AR+ DP+ + G VVS + P +FGR+A Q+AKQV+IQ++REA
Sbjct: 62 REVVKEVDNPNLEMSLEEAREIDPNYEAGDVVSVEVTPANFGRIAAQTAKQVVIQRIREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ERD Y EF D EII+G ++R NVIVDLG ++ ++ E I EN P +R+K Y
Sbjct: 122 ERDIIYEEFADMEDEIITGIIQRNHKKNVIVDLGRTEAILIPPEQIPNENYEPSERIKIY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I +V++ +GP +L+SRTHP + +LF +EVPEI++G+V++KAV+R+ G R+K+AV S++
Sbjct: 182 IVEVKQTTKGPNILVSRTHPGLLKRLFELEVPEIHDGVVKIKAVAREAGFRSKIAVDSTE 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+ +DP+G+CVG G RVQAVV EL EKIDIV WS D A F+ NAL PA VT V +DE+
Sbjct: 242 AEVDPIGSCVGPNGMRVQAVVDELNGEKIDIVNWSEDPAEFIANALSPAEVTGVEVDEEE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
V+VP QLSLAIG+ GQN RLA++LTGW IDI +E E + ++ +
Sbjct: 302 QVAVVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESEVDEEILESMDDVETDGEEG 361
Query: 366 INVDEIIAH 374
N D
Sbjct: 362 SNFDFTEVD 370
>gi|238854742|ref|ZP_04645072.1| transcription termination factor NusA [Lactobacillus jensenii
269-3]
gi|260663974|ref|ZP_05864827.1| transcription termination factor NusA [Lactobacillus jensenii
SJ-7A-US]
gi|282932867|ref|ZP_06338264.1| transcription termination factor NusA [Lactobacillus jensenii
208-1]
gi|313472265|ref|ZP_07812757.1| transcription termination factor NusA [Lactobacillus jensenii 1153]
gi|238832532|gb|EEQ24839.1| transcription termination factor NusA [Lactobacillus jensenii
269-3]
gi|239529661|gb|EEQ68662.1| transcription termination factor NusA [Lactobacillus jensenii 1153]
gi|260561860|gb|EEX27829.1| transcription termination factor NusA [Lactobacillus jensenii
SJ-7A-US]
gi|281302902|gb|EFA95107.1| transcription termination factor NusA [Lactobacillus jensenii
208-1]
Length = 368
Score = 343 bits (881), Expect = 3e-92, Method: Composition-based stats.
Identities = 134/365 (36%), Positives = 217/365 (59%), Gaps = 2/365 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + EK I +++++ + ++ A + Y ++ V+ + G+ + +
Sbjct: 4 EMLEAFATLENEKGIKQEIIVDAIKAALVAAYKKNYNQAQNVEVDFDERKGNFKVMAIKT 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV++ ++SLK A + + + ++G + + P DFGR++ Q+AKQVI+Q++REAER
Sbjct: 64 VVDEVQDARLEVSLKEALEINKAYEVGDEIKFEVTPKDFGRISAQTAKQVIMQRLREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ E+ E+++G V+R + V V + + V+ R + + E P D+++ +
Sbjct: 124 NHIVSEYSQYQDELVTGVVERHDNRFVYVMIDKVEAVMPRGDQMPNEVYNPQDKIRVLVT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +G Q+++SRT P + +LF EVPE+Y+G VQ+ +V+R+ G R K+AV S D +
Sbjct: 184 KVGNDTKGAQIVVSRTAPDMVKRLFEQEVPEVYDGTVQIVSVAREAGDRTKIAVKSDDPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT--KVVLDEDV 305
IDPVG CVG +G+RVQ VV EL E IDIV + D A F+ NAL PA V + DED
Sbjct: 244 IDPVGTCVGPKGARVQNVVNELGGENIDIVKYEDDPADFIANALNPAEVIAAQFGEDEDE 303
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
VIVP QLSLAIG++GQNVRLA++LTG+ IDI E + + + N+
Sbjct: 304 KSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESQVEFVDEDNGNDENVGDENP 363
Query: 366 INVDE 370
N +E
Sbjct: 364 TNNEE 368
>gi|153814921|ref|ZP_01967589.1| hypothetical protein RUMTOR_01136 [Ruminococcus torques ATCC 27756]
gi|145847952|gb|EDK24870.1| hypothetical protein RUMTOR_01136 [Ruminococcus torques ATCC 27756]
Length = 404
Score = 343 bits (881), Expect = 4e-92, Method: Composition-based stats.
Identities = 140/356 (39%), Positives = 234/356 (65%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+EL++ + EK+I +DV++ + +S+ A ++ +GT +I+V ++ +T D +++
Sbjct: 2 NIELMEALTILEKEKNISKDVMMDAIENSLISACKNHFGTSDNIKVIMDRDTCDYAVYAE 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVEEVE+ +ISL+ A D ++ +G + P+ +FGR+A Q+AK +I+QK+RE
Sbjct: 62 KNVVEEVEDPALEISLEEAEKLDSALQVGDIAQIPVHSKEFGRIATQNAKNLILQKIREE 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER + ++ +K +I++G V+R N+ ++LG +D ++ +E + E+ +P +R+K Y
Sbjct: 122 ERKVVFDQYFEKEKDIVTGVVQRYVGKNISINLGRADAMLTENEQVKGEHFKPTERIKLY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ +V+ +GP++L+SRTHP+ + +LF EV E+ +G V++K+++R+ GSR K+AV+S+D
Sbjct: 182 VVEVKNTPKGPKILVSRTHPELVKRLFEAEVAEVRDGTVEIKSIAREAGSRTKMAVWSND 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
++DPVGACVGM G+RV AVV ELR EKIDI+ W + A + N+L PA V V+ D +
Sbjct: 242 PNVDPVGACVGMNGARVNAVVQELRGEKIDIINWDENPALLIENSLSPAKVISVMADPEE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + + N +
Sbjct: 302 KIASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQAIEAGELPENYMEEM 357
>gi|325265380|ref|ZP_08132104.1| transcription termination factor NusA [Clostridium sp. D5]
gi|324029381|gb|EGB90672.1| transcription termination factor NusA [Clostridium sp. D5]
Length = 407
Score = 343 bits (880), Expect = 4e-92, Method: Composition-based stats.
Identities = 147/364 (40%), Positives = 235/364 (64%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
ELL+ + + EK+I +D ++ + +S+ A ++ +GT +I+V ++ ET D +++
Sbjct: 2 NTELLEALNILEQEKNISKDTMMDAIENSLISACKNHFGTAENIKVIMDRETCDYAVYAE 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
EVVEEV + +ISL+ A D ++ IG + P+ FGR+A Q+AK +I+QK+RE
Sbjct: 62 KEVVEEVFDPALEISLEDAEQIDSALQIGDIAQIPIESKSFGRIATQNAKNLILQKIREE 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y ++ +K +I++G V+R N+ ++LG +D ++ +E + E +P +R+K Y
Sbjct: 122 ERKVVYDQYFEKEKDIVTGIVQRYVGRNISINLGRADAMLTENEQVKGEVFKPTERIKLY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ +V+ +GP++L+SRTHP+ + +LF EV E+ +G V++K+++R+ GSR K+AV+S+D
Sbjct: 182 VVEVKNTPKGPKILVSRTHPELVKRLFEAEVAEVKDGTVEIKSIAREAGSRTKMAVWSND 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
++DPVGACVGM G+RV AVV ELR EKIDI+ WS + A + NAL PA V V+ D D
Sbjct: 242 ENVDPVGACVGMNGARVNAVVNELRGEKIDIINWSDNPALLIENALSPAKVISVMADPDE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + + + + Q M
Sbjct: 302 KAASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQAIESGELPEDYMEQMAMME 361
Query: 366 INVD 369
+
Sbjct: 362 DGYE 365
>gi|218887601|ref|YP_002436922.1| transcription elongation factor NusA [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218758555|gb|ACL09454.1| NusA antitermination factor [Desulfovibrio vulgaris str. 'Miyazaki
F']
Length = 443
Score = 343 bits (880), Expect = 5e-92, Method: Composition-based stats.
Identities = 181/428 (42%), Positives = 271/428 (63%), Gaps = 6/428 (1%)
Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66
LEL + D ++ +K +DRD+++ + ++++ + +G D V N ETG+I +++
Sbjct: 3 LELKKAIDQISKDKGLDRDMLIDTLEEAVRTSVARKFGDEMDAEVSYNDETGEIDVYQFK 62
Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
VV++VEN +ISL+ AR DPS+ + + + D GR+A QSAKQVIIQ++R+AE
Sbjct: 63 IVVKKVENPNSEISLEDARTHDPSVQLDDEMGFRVKIEDLGRIAAQSAKQVIIQRMRDAE 122
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
++ Y E+KD+ GEI+SG ++R + I++LG ++ ++ ++E I RE+ + GDRV++ +
Sbjct: 123 QEIIYEEYKDRRGEIVSGIIQRRDKAGWIINLGRTEALLPKEEQIPREHYKRGDRVQAIL 182
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
DVR+E RGPQV++SR H +M LF EVPE+ +G VQ+ VSRDPGSRAK AV S D
Sbjct: 183 IDVRKEGRGPQVIVSRAHRDYMAALFRREVPEVDDGTVQIMGVSRDPGSRAKAAVMSRDR 242
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
+DPVGACVG+RGSR+Q +V E+R E+IDIVVWSPD AT+ NAL PA+++++V+DE+
Sbjct: 243 DVDPVGACVGIRGSRIQNIVQEMRGERIDIVVWSPDIATYARNALSPAVISRIVVDEEEN 302
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+EVIVP +QL+ AIGR+GQNV+LA++L GW IDI TE R + N + Q
Sbjct: 303 LLEVIVPDDQLTNAIGRKGQNVKLAAKLLGWKIDIYTET-----RYNEANAIGRGLEQIA 357
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426
+V EI +A GF +E L E+AS G +++ A +L
Sbjct: 358 SVAEISIEQFIAAGFQSIERLREADDEELASALGLAPGKIADLRA-AINFLAPQAQDDAD 416
Query: 427 KIRELGVS 434
E
Sbjct: 417 ATAEPDAE 424
>gi|313888283|ref|ZP_07821954.1| transcription termination factor NusA [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312845686|gb|EFR33076.1| transcription termination factor NusA [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 411
Score = 343 bits (880), Expect = 5e-92, Method: Composition-based stats.
Identities = 153/417 (36%), Positives = 242/417 (58%), Gaps = 8/417 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E + + EK I +++V + ++ + R YGT ++ V ++ ETG+I LF
Sbjct: 2 NQEFIDALSEIEKEKGISKEIVFEALESALVSSYRKNYGTSENVIVNMDRETGEIKLFAS 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
++VE+VE+ +ISL A+ +P+ +IG V + + P +FGR+A Q+AKQV+IQ++++A
Sbjct: 62 KDIVEKVEDPQLEISLDEAKKINPNYEIGDVYNQEIHPKNFGRIAAQTAKQVVIQRIKDA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ERD + E+ ++ EII+G V+R Y NV VDLG+++ ++ E IS E+ GDR K
Sbjct: 122 ERDIVFDEYVEREKEIITGLVQRKSYNNVYVDLGSTEAILPYSEQISGESYNHGDRYKML 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I V + +GPQ++LSR+HP + +LF +E+PE+ GIV++ ++SR+ GSR K+AVFS D
Sbjct: 182 ILSVEKSTKGPQIVLSRSHPDLIKRLFELEIPEVSEGIVEIYSISREAGSRTKIAVFSRD 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DP+GACVG +G RV A+V E+ +EKIDIV++ + F+ N+L P+ V KV ++E
Sbjct: 242 PEVDPLGACVGYKGQRVNAIVDEIDNEKIDIVIYEKEIDKFIANSLSPSKVEKVFVNEAE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
IVP QLSLAIG+ GQNVRLA++LTGW IDI + + ++
Sbjct: 302 KSALAIVPDYQLSLAIGKEGQNVRLAAKLTGWKIDIKSNLQFEEYLEERNITEEDLI--- 358
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
V E +V E + I+ ++E ++ E
Sbjct: 359 -----EEYENAVKENVEEVSEDLNNPEEQDIKIDDIEDEVCGNLENADEESSVEETE 410
>gi|154506276|ref|ZP_02043014.1| hypothetical protein RUMGNA_03818 [Ruminococcus gnavus ATCC 29149]
gi|153793415|gb|EDN75835.1| hypothetical protein RUMGNA_03818 [Ruminococcus gnavus ATCC 29149]
Length = 397
Score = 343 bits (879), Expect = 5e-92, Method: Composition-based stats.
Identities = 151/373 (40%), Positives = 236/373 (63%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
EL++ + EK+I RD ++ + +S+ A ++ +GT +I+V +N ET D +++
Sbjct: 2 NTELMEALTILEKEKNISRDTMMDAIENSLISACKNHFGTSDNIKVIMNRETCDYAVYAE 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
EVVEEV + +I+L+ A + D ++ IG V P+ +FGR+A +AK +I+QK+RE
Sbjct: 62 KEVVEEVFDPAIEITLEDAEEIDSALQIGDVCQVPVQSKEFGRIATMNAKNLILQKIREE 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y ++ +K +I++G V+R N+ V+LG +D ++ +E + E +P DR+K Y
Sbjct: 122 ERKVVYDQYFEKEKDIVTGIVQRYVGKNISVNLGKADAMLTENEQVKGEVFKPTDRIKLY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I +V+ +GP++L+SRTHP+ + +LF EV E+ +G V++K+++R+ GSR K+AV+S+D
Sbjct: 182 IVEVKNTPKGPKILVSRTHPELVKRLFEAEVAEVKDGTVEIKSIAREAGSRTKMAVWSND 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
++DPVGACVGM G+RV AVV ELR EKIDI+ WS + A + NAL PA V V+ D D
Sbjct: 242 ENVDPVGACVGMNGARVNAVVEELRGEKIDIINWSDNPALLIENALSPAKVISVMADPDE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + + + + Q M
Sbjct: 302 KVASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQAIESGELPEDYMDQMNMME 361
Query: 366 INVDEIIAHLLVA 378
+ V
Sbjct: 362 EDGYAEDYEETVN 374
>gi|114566431|ref|YP_753585.1| transcription elongation factor NusA [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
gi|114337366|gb|ABI68214.1| NusA antitermination factor [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 378
Score = 342 bits (878), Expect = 7e-92, Method: Composition-based stats.
Identities = 145/373 (38%), Positives = 233/373 (62%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
+L+Q + + E+ I + ++ + ++ A + +G ++ VE N G++ +F +
Sbjct: 4 DLVQALNDIEKERGIPKRALIEAIKSALSTAYKKNFGIAQNVSVEFNEINGEVKVFSQKK 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
+ +EV++ ++SL+ A++ P + +V P DFGR+A Q+AKQV+IQK+REAER
Sbjct: 64 ISDEVKDPRLEMSLEEAQELYPDCKVEDLVYVEATPSDFGRIAAQTAKQVVIQKLREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF ++ GEII+GT++R+E V + LG ++G++ + I E G R+K+YIY
Sbjct: 124 SLIYEEFLEREGEIITGTIQRLESKTVYISLGRTEGIMMASDQIFGERYEVGQRIKAYIY 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
+V+ +GP + +SR+HP F+ +LF MEVPEIY+G+V++K+++R+ G+R+K+AV+S D
Sbjct: 184 EVKNTSKGPNIFVSRSHPYFLRRLFEMEVPEIYDGVVEIKSIAREAGARSKIAVYSLDDK 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
ID VGACVG RG RVQ +V+EL EKIDI+ + D ++ NAL P+ V V ++E
Sbjct: 244 IDSVGACVGPRGLRVQNIVSELGGEKIDIIKYDKDPERYISNALSPSRVVAVNINETDKI 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
VIVP QLSLAIG+ GQN RLA++LTGW +DI +E + S + E ++
Sbjct: 304 ARVIVPDYQLSLAIGKEGQNARLAAKLTGWKVDIRSESQMSDYYNEIDAEMDDEVLEQDW 363
Query: 368 VDEIIAHLLVAEG 380
+E + E
Sbjct: 364 AEENTGETKIDEQ 376
>gi|227510252|ref|ZP_03940301.1| transcription elongation factor NusA [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
gi|227189904|gb|EEI69971.1| transcription elongation factor NusA [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
Length = 444
Score = 342 bits (877), Expect = 8e-92, Method: Composition-based stats.
Identities = 148/429 (34%), Positives = 230/429 (53%), Gaps = 1/429 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL A+ EK I ++VV+ M ++ A + YG ++ V + G++ ++ +
Sbjct: 4 ELLGALSALEEEKGIKKEVVIEAMQAALVSAYKRNYGQAQNVEVSFDGTKGEMHVYSVKT 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVE V + Q+SL A + +IG + + P +FGR+A Q+AKQVI+Q+VREAER
Sbjct: 64 VVETVTDDQMQVSLDDALQINKGYEIGDDIKFEVTPKNFGRIAAQTAKQVIMQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ + E+ ++++GTV+R + V ++L + V+ + + E RP +R+K Y+
Sbjct: 124 ENIFDEYSKYEDDLVTGTVERQDTRFVYINLDKVEAVMGPRDQMPNEVYRPQERIKVYVT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +GPQV +SRT P + +LF EVPEIY+G V++ +++R+ G RAK+AV S++S
Sbjct: 184 RVENATKGPQVFVSRTDPGMLKRLFEQEVPEIYDGTVEIVSIAREAGDRAKVAVRSNNSD 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV-G 306
IDPVG VG +G RVQ +V EL E +DIV W D A ++ NAL PA V V+ D+D
Sbjct: 244 IDPVGTAVGPKGQRVQTIVNELHGENMDIVEWDEDDARYIANALNPAEVIDVIFDDDNDR 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
VIVP QLSLAIG+RGQN RLA++LTG+ IDI +E E + + Q +
Sbjct: 304 ACTVIVPDYQLSLAIGKRGQNARLAAKLTGFKIDIKSETEAKEFLAERKQKAQQVENEDE 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426
+ + +D V DE+ + Q + +E +
Sbjct: 364 GTTDESETAEPDQETSDDTLGESVDTDSQEVQTESDEDVEADAQDDQSDNVEKQSEHIDD 423
Query: 427 KIRELGVSE 435
+
Sbjct: 424 ADSSDHTED 432
>gi|256851259|ref|ZP_05556648.1| transcription termination factor NusA [Lactobacillus jensenii
27-2-CHN]
gi|260660683|ref|ZP_05861598.1| transcription termination factor NusA [Lactobacillus jensenii
115-3-CHN]
gi|282934727|ref|ZP_06339970.1| transcription termination factor NusA [Lactobacillus jensenii
208-1]
gi|297206126|ref|ZP_06923521.1| transcription termination factor NusA [Lactobacillus jensenii
JV-V16]
gi|256616321|gb|EEU21509.1| transcription termination factor NusA [Lactobacillus jensenii
27-2-CHN]
gi|260548405|gb|EEX24380.1| transcription termination factor NusA [Lactobacillus jensenii
115-3-CHN]
gi|281301302|gb|EFA93603.1| transcription termination factor NusA [Lactobacillus jensenii
208-1]
gi|297149252|gb|EFH29550.1| transcription termination factor NusA [Lactobacillus jensenii
JV-V16]
Length = 368
Score = 342 bits (877), Expect = 9e-92, Method: Composition-based stats.
Identities = 133/365 (36%), Positives = 218/365 (59%), Gaps = 2/365 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + EK I +++++ + ++ A + Y ++ V+++ G+ + +
Sbjct: 4 EMLEAFATLETEKGIKQEIIVDAIKAALVAAYKKNYNQAQNVEVDLDERKGNFKVMAIKT 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV++ ++SLK A + + + ++G + + P DFGR++ Q+AKQVI+Q++REAER
Sbjct: 64 VVDEVQDDRLEVSLKDALEINKAYEVGDEIKFEVTPKDFGRISAQTAKQVIMQRLREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ E+ E+++G V+R + V V + + V+ R + + E P D+++ +
Sbjct: 124 NHIVSEYSQYQDELVTGVVERHDNRFVYVMIDKVEAVMPRGDQMPNEVYNPQDKIRVLVT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +G Q+++SRT P + +LF EVPE+Y+G VQ+ +V+R+ G R K+AV S D +
Sbjct: 184 KVGNDTKGAQIVVSRTAPDMVKRLFEQEVPEVYDGTVQIVSVAREAGDRTKIAVKSDDPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT--KVVLDEDV 305
IDPVG CVG +G+RVQ VV EL E IDIV + D A F+ NAL PA V + DED
Sbjct: 244 IDPVGTCVGPKGARVQNVVNELGGENIDIVKYEDDPADFIANALNPAEVIAAQFGEDEDE 303
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
VIVP QLSLAIG++GQNVRLA++LTG+ IDI E + + + N +
Sbjct: 304 KSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESQVEFVDEDNGNSENAGEEKP 363
Query: 366 INVDE 370
+ +E
Sbjct: 364 ADNEE 368
>gi|269926028|ref|YP_003322651.1| NusA antitermination factor [Thermobaculum terrenum ATCC BAA-798]
gi|269789688|gb|ACZ41829.1| NusA antitermination factor [Thermobaculum terrenum ATCC BAA-798]
Length = 372
Score = 342 bits (877), Expect = 9e-92, Method: Composition-based stats.
Identities = 159/356 (44%), Positives = 230/356 (64%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
R E ++ E+ I RDV++ + ++++ R Y DI V+I+P TG +++R+
Sbjct: 2 RGEFYAAISQLSLERGIPRDVLIKSVEEAVKAVYRKNYDASGDIEVKIDPNTGQATVYRV 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
L+VVE V++ QISL A+ D IG VV + P FGR+A Q KQV++QK+REA
Sbjct: 62 LQVVENVKDPKTQISLADAKKIDKEARIGSVVHQDVTPDTFGRIAAQMTKQVMLQKIREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
E + Y EF D+ GE+++G V+RVE G VIV LG ++ ++ + E + EN +PG R+K
Sbjct: 122 EHETIYKEFGDREGELVTGVVQRVENGLVIVQLGKAEAIMPKAEQVESENYKPGQRLKVL 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ V + RGPQ+++SR + +LF +EVPEIYNG V++KA++R PG R+K+AV +
Sbjct: 182 LLKVVKTPRGPQLIVSRRDKNLLKRLFEIEVPEIYNGSVEIKAIARIPGVRSKIAVAARQ 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
IDPVG+CVG+RG+RVQ VV EL+ EKIDI+ WS D ATF+ AL PA V +V+LD++
Sbjct: 242 PGIDPVGSCVGVRGTRVQNVVDELQGEKIDIIQWSDDPATFIARALSPAQVNEVILDKET 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
VIVP++QLSLAIG+ GQN RLA+ LTGW IDI + E + +
Sbjct: 302 KTATVIVPEKQLSLAIGKDGQNARLAANLTGWRIDIRSPENVEHFSSSSTSVSEEQ 357
>gi|291519298|emb|CBK74519.1| transcription termination factor NusA [Butyrivibrio fibrisolvens
16/4]
Length = 393
Score = 342 bits (877), Expect = 1e-91, Method: Composition-based stats.
Identities = 145/348 (41%), Positives = 218/348 (62%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
++AN + + +A EK+I DV++ + +S+ A ++ YG + +VEI+ TG+
Sbjct: 1 MAANTNDFWEALTDLAKEKNISMDVLIETIENSLLIACKNNYGKADNAKVEIDKNTGEYH 60
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
++ VV+EV + +ISL A+D +G +V + DFGR+A +AK I QK
Sbjct: 61 VYLSKTVVDEVMDPVEEISLSDAQDISGKHQVGDIVQIEVKSKDFGRIAATAAKNTITQK 120
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
+RE ER Y E+ + ++++G V R N+ V+LG +G + E + E +P DR
Sbjct: 121 IREEERKVLYEEYYELQHKVVTGVVTRFSGNNIHVNLGKLEGFLSETEQVKGEYYKPQDR 180
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K YI +V+ +GP++L+SRTHP+ + KLF EV E+ +GIV++K++SR+ GSR K+AV
Sbjct: 181 IKVYIVEVKTSNKGPRILVSRTHPELVKKLFEEEVSEVRDGIVEIKSISREAGSRTKIAV 240
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
+S+D +DPVGACVG G+RV A+V ELR EKIDIV W + A + NAL PA V V+
Sbjct: 241 WSNDEDVDPVGACVGQNGARVNAIVNELRGEKIDIVEWDENPAYLIENALSPAKVVAVIA 300
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
D D V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E +
Sbjct: 301 DADEKTARVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSETQAKE 348
>gi|284108775|ref|ZP_06386440.1| transcription elongation factor NusA [Candidatus Poribacteria sp.
WGA-A3]
gi|283829849|gb|EFC34140.1| transcription elongation factor NusA [Candidatus Poribacteria sp.
WGA-A3]
Length = 404
Score = 342 bits (877), Expect = 1e-91, Method: Composition-based stats.
Identities = 156/368 (42%), Positives = 231/368 (62%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+ EL+ + + V EK ID+ VL+ + ++ AA+ YG +I+V+I+PETG+IS+ L
Sbjct: 2 KHELMAVIEQVGREKGIDKHRVLAAVESALLTAAKKRYGNNENIQVQIDPETGEISIVSL 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+ +++ + QISL AR D ++G + + +FGR+A Q+AKQVI QKVREA
Sbjct: 62 KTIADQITDVNAQISLDEARAIDGEAELGDEIGSLIDVEEFGRIAAQAAKQVICQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
+ E+ + G+++ G + E N +V++G ++ V+ E I RE R GDRV++
Sbjct: 122 TWEAVEREYSKREGDLVHGIILGQERRNYLVEIGKTEAVLPVHEQIPREVHRRGDRVRAL 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ +VRR + QV+LSR HPQF+VKLF +EVPE+ I+++K V R+PG R K+AVFS D
Sbjct: 182 LLEVRRTPKDVQVILSRAHPQFVVKLFQLEVPEVTEKILEIKGVVREPGDRTKIAVFSKD 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
++DPVGACVG++GSRVQA+V EL+ EKIDI+ W+ D F+ AL PA + KV +DE+
Sbjct: 242 KAVDPVGACVGIKGSRVQAIVRELKGEKIDIIPWTTDPRVFIGEALNPASIEKVGIDEEK 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
V+V QLSLAIG+ GQNVRLA++LTGW IDII+ E + + E +
Sbjct: 302 KAALVVVADSQLSLAIGKNGQNVRLAAKLTGWKIDIISVSEYEKEKLEREREIKAALAEE 361
Query: 366 INVDEIIA 373
Sbjct: 362 TAAQREQE 369
>gi|301300268|ref|ZP_07206477.1| transcription termination factor NusA [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|300214374|gb|ADJ78790.1| N utilization substance protein A [Lactobacillus salivarius CECT
5713]
gi|300852109|gb|EFK79784.1| transcription termination factor NusA [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 375
Score = 341 bits (876), Expect = 1e-91, Method: Composition-based stats.
Identities = 145/367 (39%), Positives = 226/367 (61%), Gaps = 1/367 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL +A+ EK + +++V+ + ++ A + YG ++ VE + G+I ++ + E
Sbjct: 4 ELLNALNALEVEKGVKKEIVIEALEAALVSAYKRNYGQAQNVEVEFDKIAGNIHVYAVKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV EV + +ISLK A + + + +IG + + + P DFGR+A Q+AKQVI+Q+VR+ ER
Sbjct: 64 VVNEVYDSQLEISLKSALEINRAYEIGDTIREEVTPKDFGRIAAQTAKQVIMQRVRKEER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y E+ EI++G V+R + V V+LG + V+ R + I E + D++K YIY
Sbjct: 124 EVIYNEYVQYEQEIVTGEVERRDNKFVYVNLGRIEAVLSRQDQIPGEEYKSHDKIKVYIY 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +GPQV +SR+HP + +LF E+PEI++G V++ ++SR+ G RAK+AV S++
Sbjct: 184 KVENTSKGPQVFVSRSHPDLLRRLFEQEIPEIFDGTVEIVSISREAGDRAKVAVRSNEDG 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED-VG 306
+DPVG CVG RG RVQA+V EL+ E +DIV W D A ++ NAL PA V V D++
Sbjct: 244 VDPVGTCVGPRGERVQAIVNELKGENMDIVEWREDPAEYIANALNPAKVLDVRFDDENEH 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
V+VP +QLSLAIG+RGQN RLA++LTG+ IDI +E + + + + +
Sbjct: 304 ACTVVVPDDQLSLAIGKRGQNARLAARLTGYKIDIKSESDAADLNNVEADNNDIDDEDQL 363
Query: 367 NVDEIIA 373
D
Sbjct: 364 MSDSSSN 370
>gi|90961545|ref|YP_535461.1| transcription elongation factor NusA [Lactobacillus salivarius
UCC118]
gi|227890633|ref|ZP_04008438.1| transcription elongation factor NusA [Lactobacillus salivarius ATCC
11741]
gi|90820739|gb|ABD99378.1| N utilization substance protein A [Lactobacillus salivarius UCC118]
gi|227867571|gb|EEJ74992.1| transcription elongation factor NusA [Lactobacillus salivarius ATCC
11741]
Length = 375
Score = 341 bits (876), Expect = 1e-91, Method: Composition-based stats.
Identities = 145/367 (39%), Positives = 226/367 (61%), Gaps = 1/367 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL +A+ EK + +++V+ + ++ A + YG ++ VE + G+I ++ + E
Sbjct: 4 ELLNALNALEVEKGVKKEIVIEALEAALVSAYKRNYGQAQNVEVEFDKIAGNIHVYAVKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV EV + +ISLK A + + + +IG + + + P DFGR+A Q+AKQVI+Q+VR+ ER
Sbjct: 64 VVNEVYDSQLEISLKSALEINRAYEIGDTIREEVTPKDFGRIAAQTAKQVIMQRVRKEER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y E+ EI++G V+R + V V+LG + V+ R + I E + D++K YIY
Sbjct: 124 EVIYNEYVQYEQEIVTGEVERRDNKFVYVNLGRIEAVLSRQDQIPGEEYKSHDKIKVYIY 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +GPQV +SR+HP + +LF E+PEI++G V++ ++SR+ G RAK+AV S++
Sbjct: 184 KVENTSKGPQVFVSRSHPDLLRRLFEQEIPEIFDGTVEIVSISREAGDRAKVAVRSNEDG 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED-VG 306
+DPVG CVG RG RVQA+V EL+ E +DIV W D A ++ NAL PA V V D++
Sbjct: 244 VDPVGTCVGPRGERVQAIVNELKGENMDIVEWREDPAEYIANALNPAKVLDVRFDDENEH 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
V+VP +QLSLAIG+RGQN RLA++LTG+ IDI +E + + + + +
Sbjct: 304 ACTVVVPDDQLSLAIGKRGQNARLAARLTGYKIDIKSESDAADLNNVEADNNDIDDEDQL 363
Query: 367 NVDEIIA 373
D
Sbjct: 364 MSDSSSN 370
>gi|283797337|ref|ZP_06346490.1| transcription termination factor NusA [Clostridium sp. M62/1]
gi|291075009|gb|EFE12373.1| transcription termination factor NusA [Clostridium sp. M62/1]
gi|295090489|emb|CBK76596.1| transcription termination factor NusA [Clostridium cf.
saccharolyticum K10]
Length = 408
Score = 341 bits (876), Expect = 1e-91, Method: Composition-based stats.
Identities = 146/393 (37%), Positives = 231/393 (58%), Gaps = 4/393 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
EL + + + E +I ++V+ + +S+ A ++ +G +I+V I+ E D +++ E
Sbjct: 4 ELFEALNVLEKENNISKEVLFEAIENSLLTACKNHFGRADNIKVYIDREKCDFAVYAEKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVE VE+ Q+SL A+ DP G +V + +FGR+A Q+AK VI+QK+RE ER
Sbjct: 64 VVENVEDPLTQVSLAEAKLMDPRHVYGDIVRVNINSKEFGRIATQNAKNVILQKIREEER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ + + ++++G V+R +V +DLG D V++ E + E +P +K +I
Sbjct: 124 TALFDHWYCREKDVVTGIVQRYVGHDVYIDLGKIDAVLKESEQVKGEEFKPTQHIKLFIL 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
+V+ ++GP++ +SRTHP + +LF EV E+ +G V++KA++R+ GSR K+AV S+D +
Sbjct: 184 EVKNTKKGPRITVSRTHPDLVKRLFESEVAEVKDGTVEIKAIAREAGSRTKIAVASNDPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVGACVG+ G+RV +VV+EL EKIDI+ W + A + NAL PA V V DE+
Sbjct: 244 VDPVGACVGLNGARVNSVVSELNGEKIDIINWDDNPALLIENALSPAKVIFVAADEEARE 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
+VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + + D E
Sbjct: 304 AQVIVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSETQARESGLFDEMEMGYEQGFEEG 363
Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEG 400
+ E A+ F+D E + S E
Sbjct: 364 LPESTQ----ADDFSDYTEPQDAEDSMEEQAEE 392
>gi|291538564|emb|CBL11675.1| transcription termination factor NusA [Roseburia intestinalis
XB6B4]
Length = 407
Score = 341 bits (876), Expect = 1e-91, Method: Composition-based stats.
Identities = 152/408 (37%), Positives = 240/408 (58%), Gaps = 9/408 (2%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
ELL+ + + EK+I +D +L + +S+ A ++ +G+ +++V I+PET + +F+
Sbjct: 3 NNELLEALNILEQEKNISKDTLLEAIENSLVTACKNHFGSSDNVKVSIDPETCEFHVFQE 62
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVE VE+ QISL A+ + +IG V + + +FGR+A Q+AK VI+QK+RE
Sbjct: 63 KTVVETVEDPVEQISLVNAKMINSKYEIGDVANIEVQSKEFGRIATQNAKNVILQKIREE 122
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y ++ ++++G V+R NV ++LG D ++ +E + E +P +R+K Y
Sbjct: 123 ERKVLYDQYYSMEKDVVTGVVQRYVGRNVSINLGRVDAILTENEQVKGEVFQPTERIKVY 182
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I +V+ +GP+VL+SRTHP+ + +LF EV E+ GIV++KA++R+ GSR K+AV+S+D
Sbjct: 183 ILEVKATSKGPKVLVSRTHPELVKRLFESEVAEVREGIVEIKAIAREAGSRTKIAVWSND 242
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DPVGACVGM G+RV A+V ELR EKIDI+ W+ + A + NAL PA V V+ D +
Sbjct: 243 PDVDPVGACVGMNGARVNAIVGELRGEKIDIITWNENPAMMIENALSPAKVISVIADAEE 302
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
+V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + + E +
Sbjct: 303 KSAKVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSETQARESGDFLDYENDYEEDEY 362
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413
+ D E E + ++ + A E A
Sbjct: 363 YDEDGGSYEE---------YEDGSAPAEEGYEEDSYETDGAEENNAEA 401
>gi|254974853|ref|ZP_05271325.1| transcription elongation protein [Clostridium difficile QCD-66c26]
gi|255092240|ref|ZP_05321718.1| transcription elongation protein [Clostridium difficile CIP 107932]
gi|255313980|ref|ZP_05355563.1| transcription elongation protein [Clostridium difficile QCD-76w55]
gi|255516660|ref|ZP_05384336.1| transcription elongation protein [Clostridium difficile QCD-97b34]
gi|255649759|ref|ZP_05396661.1| transcription elongation protein [Clostridium difficile QCD-37x79]
gi|260682915|ref|YP_003214200.1| transcription elongation protein [Clostridium difficile CD196]
gi|260686513|ref|YP_003217646.1| transcription elongation protein [Clostridium difficile R20291]
gi|306519864|ref|ZP_07406211.1| transcription elongation protein [Clostridium difficile QCD-32g58]
gi|260209078|emb|CBA62223.1| transcription elongation protein [Clostridium difficile CD196]
gi|260212529|emb|CBE03480.1| transcription elongation protein [Clostridium difficile R20291]
Length = 384
Score = 341 bits (876), Expect = 1e-91, Method: Composition-based stats.
Identities = 148/348 (42%), Positives = 229/348 (65%), Gaps = 2/348 (0%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E ++ D + ++ ID+++++ + ++ A + +G+ ++RVE + + GDI +F
Sbjct: 2 NHEFMEALDELVVDRGIDKEILIDTIEQALLTAYKKNFGSAQNVRVEFDRDKGDIKVFSQ 61
Query: 66 LEVVEEVENYTC--QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
VV+E + Y +I L AR+ +P+ ++G ++ + P +FGR+A Q+AKQV++Q++R
Sbjct: 62 RVVVDESDLYDTFLEIELADAREINPNYELGDIIEHEVTPKNFGRIAAQTAKQVVVQRIR 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183
EAER+ Y EF +K EI++G V R V V+LG +G++ + E I EN + G ++K
Sbjct: 122 EAEREIVYNEFIEKENEIVTGEVARANKNVVYVNLGRIEGIMTQSEQIPFENYKAGQKIK 181
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
YI +V++ +GPQ+++SR+HP + +LF EVPEIY GIVQ+K+V+R+ GSR K+AV S
Sbjct: 182 FYILEVKKTNKGPQIVVSRSHPGLVKRLFEEEVPEIYEGIVQIKSVAREAGSRTKMAVKS 241
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
D IDP+GACVG +G RV+ +V EL DEKIDI+ +S D A F+ AL P+ V +V +DE
Sbjct: 242 IDEKIDPIGACVGPKGLRVKNIVDELGDEKIDIIKYSEDPAEFISAALSPSKVVRVDIDE 301
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351
D VIVP QLSLAIG+ GQN RLA++LT W IDI +E +
Sbjct: 302 DEKSALVIVPDYQLSLAIGKEGQNARLAAKLTNWKIDIKSESQAEQEM 349
>gi|225570594|ref|ZP_03779619.1| hypothetical protein CLOHYLEM_06696 [Clostridium hylemonae DSM
15053]
gi|225160607|gb|EEG73226.1| hypothetical protein CLOHYLEM_06696 [Clostridium hylemonae DSM
15053]
Length = 397
Score = 341 bits (875), Expect = 2e-91, Method: Composition-based stats.
Identities = 147/396 (37%), Positives = 238/396 (60%), Gaps = 1/396 (0%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
ELL+ + + EK I ++ +L + +S+ A ++ +G +I+V ++ ET D +F
Sbjct: 2 NTELLEALNILEKEKDISKETLLDAIENSLLNACKNHFGKADNIKVIMDRETCDYKVFAE 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VEEVE+ QISL+ AR+ D + ++G +V P+ FGR+A Q+AK +I+QK+RE
Sbjct: 62 KTAVEEVEDDLEQISLEDAREIDSTFELGDIVQIPIESKSFGRIATQNAKNLILQKIREE 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y ++ +K +I++G V+R N+ ++LG +D ++ +E + E +P +R+K Y
Sbjct: 122 ERKVVYDQYFEKEKDIVTGIVQRYVGKNISINLGKADAMLTENEQVKGEVFKPTERIKLY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ +V+ +GP++L+SRTHP+ + +LF EV E+ +G V++K+++R+ GSR K+AV+S+D
Sbjct: 182 VVEVKNTTKGPKILVSRTHPELVKRLFESEVTEVKDGTVEIKSIAREAGSRTKIAVWSND 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DPVGACVGM G+RV +V ELR EKIDI+ WS + A + NAL PA V V+ D D
Sbjct: 242 PDVDPVGACVGMNGARVNTIVNELRGEKIDIINWSDNPAILIENALSPAKVISVMADPDE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE-DSINRQKDFNERTQFFMQ 364
VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + + +
Sbjct: 302 KAASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQAIESGELPENYMELSEGVY 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEG 400
+ E E + + + + ++ E
Sbjct: 362 EEEMYEDDFDGEYTEEYPEDYDDGAAEDIDVTDTEE 397
>gi|255655319|ref|ZP_05400728.1| transcription elongation protein [Clostridium difficile QCD-23m63]
gi|296451304|ref|ZP_06893044.1| transcription termination factor NusA [Clostridium difficile NAP08]
gi|296880344|ref|ZP_06904307.1| transcription termination factor NusA [Clostridium difficile NAP07]
gi|296259910|gb|EFH06765.1| transcription termination factor NusA [Clostridium difficile NAP08]
gi|296428585|gb|EFH14469.1| transcription termination factor NusA [Clostridium difficile NAP07]
Length = 384
Score = 341 bits (875), Expect = 2e-91, Method: Composition-based stats.
Identities = 148/348 (42%), Positives = 229/348 (65%), Gaps = 2/348 (0%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E ++ D + ++ ID+++++ + ++ A + +G+ ++RVE + + GDI +F
Sbjct: 2 NHEFMEALDELVVDRGIDKEILIDTIEQALLTAYKKNFGSAQNVRVEFDRDKGDIKVFSQ 61
Query: 66 LEVVEEVENYTC--QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
VV+E + Y +I L AR+ +P+ ++G ++ + P +FGR+A Q+AKQV++Q++R
Sbjct: 62 RVVVDESDLYDTFLEIELADAREINPNYELGDIIEHEVTPKNFGRIAAQTAKQVVVQRIR 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183
EAER+ Y EF +K EI++G V R V V+LG +G++ + E I EN + G ++K
Sbjct: 122 EAEREIVYNEFIEKENEIVTGEVARANKNVVYVNLGRIEGIMTQSEQIPFENYKAGQKIK 181
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
YI +V++ +GPQ+++SR+HP + +LF EVPEIY GIVQ+K+V+R+ GSR K+AV S
Sbjct: 182 FYILEVKKTNKGPQIVVSRSHPGLVKRLFEEEVPEIYEGIVQIKSVAREAGSRTKMAVRS 241
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
D IDP+GACVG +G RV+ +V EL DEKIDI+ +S D A F+ AL P+ V +V +DE
Sbjct: 242 IDEKIDPIGACVGPKGLRVKNIVDELGDEKIDIIKYSEDPAEFISAALSPSKVVRVDIDE 301
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351
D VIVP QLSLAIG+ GQN RLA++LT W IDI +E +
Sbjct: 302 DEKSALVIVPDYQLSLAIGKEGQNARLAAKLTNWKIDIKSESQAEQEM 349
>gi|323464620|gb|ADX76773.1| transcription termination factor NusA [Staphylococcus
pseudintermedius ED99]
Length = 392
Score = 341 bits (875), Expect = 2e-91, Method: Composition-based stats.
Identities = 155/388 (39%), Positives = 234/388 (60%), Gaps = 1/388 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + + EK I R+V++ + ++ A + Y + ++RVE+N ++G + E
Sbjct: 5 ELLLATEYLEKEKKIPREVLVDAIEAALITAYKKNYDSARNVRVELNLDSGTFRVISRKE 64
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV ++ +I L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER
Sbjct: 65 VVEEVFDHREEIDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y EF DK +I++G + RV++ V V+LG ++ V+ E E P +R+K Y+
Sbjct: 125 EILYEEFIDKEDDIMTGVIDRVDHRYVYVNLGRTEAVLSEAERSPNETYLPNERIKVYVN 184
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SR+HP + +LF EVPEI+ G V+VK+V+R+ G R+K++V+S +
Sbjct: 185 KVEQTTKGPQIFVSRSHPGLLKRLFEQEVPEIFEGTVEVKSVAREAGDRSKISVYSENPD 244
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
ID VGACVG +G+RV+AVV EL EKIDIV WS D FV NAL P+ V V++DE+
Sbjct: 245 IDAVGACVGAKGARVEAVVAELGGEKIDIVQWSEDPKVFVRNALSPSQVIDVIVDEENQS 304
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ-AI 366
VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + + T A+
Sbjct: 305 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAKALGIGEKETTTVETEPVAM 364
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISE 394
+E+ E D L
Sbjct: 365 TAEELDLEATTDEHIEDNASLEDESKEN 392
>gi|164688521|ref|ZP_02212549.1| hypothetical protein CLOBAR_02166 [Clostridium bartlettii DSM
16795]
gi|164602934|gb|EDQ96399.1| hypothetical protein CLOBAR_02166 [Clostridium bartlettii DSM
16795]
Length = 384
Score = 341 bits (875), Expect = 2e-91, Method: Composition-based stats.
Identities = 144/383 (37%), Positives = 236/383 (61%), Gaps = 2/383 (0%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E ++ D + ++ ID+++++ + ++ A + +G+ ++RV ++ E G++ ++
Sbjct: 2 NHEFMEALDELEKDRGIDKEIIIDTIEQALLTAYKKNFGSAQNVRVSVDREGGEVRVYSQ 61
Query: 66 LEVVEEVENYTC--QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
VV+E + Y +I L A DPS ++G ++ + + P +FGR+A Q+AKQV++Q++R
Sbjct: 62 RRVVDESDLYDTFLEIELADAIKIDPSYELGDIIENEVTPKEFGRIAAQTAKQVVVQRIR 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183
EAER+ Y EF +K EI++G + R V V++G + + +E I E + G ++K
Sbjct: 122 EAEREIVYNEFIEKESEIVTGEIARATSKTVYVNVGKIEASMPENEQIPGEVYKAGQKIK 181
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
YI +V++ +GPQ+++SR+HP + +LF M+V EI+ GIVQ+K+VSR+ GSR K+AV S
Sbjct: 182 VYILEVKKTNKGPQIVVSRSHPGLVKRLFEMQVVEIFEGIVQIKSVSREAGSRTKIAVQS 241
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
D IDP+GACVG +GSRV+AVV EL EKIDI+ +S D A F+ AL P+ V KV ++E
Sbjct: 242 IDEKIDPIGACVGPKGSRVKAVVDELGGEKIDIINYSEDPAEFISAALSPSKVEKVEINE 301
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
+ V+VP QLSLAIG+ GQN RLA++LT W IDI + + + N + F+
Sbjct: 302 EEKTALVVVPDYQLSLAIGKSGQNARLAAKLTNWKIDIKSVSQMQAEMEAIKNVQDVDFV 361
Query: 364 QAINVDEIIAHLLVAEGFADVEE 386
+ + + +E E
Sbjct: 362 EEDIELQAQDVDMDSENIDLDAE 384
>gi|269837284|ref|YP_003319512.1| NusA antitermination factor [Sphaerobacter thermophilus DSM 20745]
gi|269786547|gb|ACZ38690.1| NusA antitermination factor [Sphaerobacter thermophilus DSM 20745]
Length = 443
Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats.
Identities = 153/383 (39%), Positives = 234/383 (61%), Gaps = 6/383 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINP----ETGDIS 61
+ + +A E++I R+ VLS + +++ + + GT ++ V+I+P G I
Sbjct: 2 KSDFYTAIATIAAERNIPREAVLSSVEHALRTVYKKMAGTEEEVEVQIDPTLDPNKGGIR 61
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
+F + VVEEVE+ +IS++ AR P +G V+ P +FGR+A Q+AKQV++Q+
Sbjct: 62 IFVVKRVVEEVEDPNTEISVEEARKTHPDAVVGDVIRFDRTPQNFGRIAAQTAKQVVLQR 121
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
+R+ ERD Y E+ D+VGE+++G V+R + VIVDLG ++ V+ E + E R G R
Sbjct: 122 IRDYERDSVYAEYIDRVGEVLNGIVQRADPKAVIVDLGKAEAVMPAREQVPNERYRVGQR 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K Y+ +V ++ RGPQ+++SRTH + +LF +EVPEIY+G V++ AV+R+PG R+K+AV
Sbjct: 182 LKVYLLEVNKDTRGPQLIVSRTHANLIRRLFELEVPEIYSGAVEIMAVAREPGLRSKVAV 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
+ +DPVG+CVG+RG R+Q +V EL EKID++ WSPD+ TF+ NAL PA V L
Sbjct: 242 AARQEKVDPVGSCVGVRGVRIQNIVNELYGEKIDVIEWSPDTPTFIANALSPAKPISVQL 301
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
+E VIVP EQ+SLAIG+ GQN RLA +LTGW IDI E + +
Sbjct: 302 NEAEKVARVIVPTEQMSLAIGKDGQNARLAYKLTGWRIDIKGPEALRGSDDDILRQARAA 361
Query: 362 FMQAIN--VDEIIAHLLVAEGFA 382
+ + + + LV
Sbjct: 362 LAEVPDDLMTQGRQPRLVRADGT 384
>gi|225374838|ref|ZP_03752059.1| hypothetical protein ROSEINA2194_00459 [Roseburia inulinivorans DSM
16841]
gi|225213299|gb|EEG95653.1| hypothetical protein ROSEINA2194_00459 [Roseburia inulinivorans DSM
16841]
Length = 390
Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats.
Identities = 144/346 (41%), Positives = 229/346 (66%)
Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
A ELL+ + + EK+I ++ +L + +S+ A ++ +G +++V I+PET + +F
Sbjct: 7 AKNNELLEALNILEQEKNISKETLLEAIENSLITACKNHFGKSENVKVNIDPETCEYHVF 66
Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+ +VVE+VE+ +ISL A+ D ++ +V+ + +FGR+A Q+AK VI+QK+R
Sbjct: 67 QEKKVVEKVEDPVEEISLVNAKMIDSKYELDDIVNVEVKSKEFGRIATQNAKNVILQKIR 126
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183
E ER + E+ K +I++G V+R NV ++LG D ++ +E + E +P +R+K
Sbjct: 127 EEERKVLFDEYYSKEKDIVTGIVQRYVGKNVSINLGKVDAILTENEQVKGEVFQPTERIK 186
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
YI +V+ +GP+VL+SRTHP+ + +LF EV E+ +G V++KA++R+ GSR K+AV+S
Sbjct: 187 VYILEVKSTSKGPRVLVSRTHPELVKRLFESEVAEVKDGTVEIKAIAREAGSRTKIAVWS 246
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
+D +DPVGACVGM G+RV A+V ELR EKIDI+ W+ + A + NAL PA V V+ D
Sbjct: 247 NDPDVDPVGACVGMNGARVNAIVNELRGEKIDIITWNENPAMLIENALSPAKVISVIADA 306
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
+ +V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E +
Sbjct: 307 EEKAAKVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSETQARE 352
>gi|253580823|ref|ZP_04858086.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251847893|gb|EES75860.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 406
Score = 340 bits (873), Expect = 3e-91, Method: Composition-based stats.
Identities = 149/349 (42%), Positives = 222/349 (63%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
EL + D + EKSI +D +L + S+ +A ++ +G ++ V I+PET D S++
Sbjct: 4 ELREALDILEKEKSISKDTLLEAIEQSLIQACKNHFGKADNVHVTIDPETCDFSVYADRS 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
+VE VE+ +ISL A +IGG++ P+ +FGR+A Q+AK VI+QK+RE ER
Sbjct: 64 IVEYVEDPAMEISLADALKITSRAEIGGMIQVPIQSKEFGRIATQNAKNVILQKIREEER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y E+ K E+++G V+RV NV ++LG +D V+ +E + E +P +R+K YI
Sbjct: 124 KVLYDEYYGKEKEVVTGIVQRVMGKNVSINLGKADAVLSENEQVKGETFQPTERIKVYIL 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
+V+ +GP++L+SRTHP + +LF EV E+ +G V++K+++R+ GSR K+AV+S+D
Sbjct: 184 EVKDTPKGPRILVSRTHPGLVKRLFESEVAEVKDGTVEIKSIAREAGSRTKIAVWSNDPD 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+D VGACVGM G+RV AVV ELR EKIDI+ W + A + NAL PA V V+ D D
Sbjct: 244 VDAVGACVGMNGARVNAVVEELRGEKIDIINWDENPAILIENALSPAKVIAVMADPDEKT 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356
V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E +
Sbjct: 304 ALVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSETQAKEAGDFYDY 352
>gi|116492653|ref|YP_804388.1| transcription elongation factor [Pediococcus pentosaceus ATCC
25745]
gi|116102803|gb|ABJ67946.1| Transcription elongation factor [Pediococcus pentosaceus ATCC
25745]
Length = 362
Score = 340 bits (873), Expect = 3e-91, Method: Composition-based stats.
Identities = 137/340 (40%), Positives = 207/340 (60%), Gaps = 1/340 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E++ D + EK I ++V++ + ++ A + YG ++ VE N GDI ++ + +
Sbjct: 4 EMITALDILEKEKGIKKEVIVEALEAALVSAFKRNYGQAQNVEVEFNDRKGDIHVYAVKK 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEVE+ ++SL A + + ++ + + P +FGR+A Q+AKQVI+Q+VREAER
Sbjct: 64 VVEEVEDDQLEVSLADALMINRAYELDDEIRFEVTPKNFGRIAAQTAKQVIMQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y ++ EI++G V + V VDLG + V+ + + I E P D +K YI
Sbjct: 124 GVIYEKYGQYEDEIVTGEVSHRDNRYVYVDLGGVEAVMAKSDQIPGEQYEPHDHIKVYIT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +GPQ+ SRT + +LF EVPE+Y+G V++ +++R+ G RAK+AV S+D
Sbjct: 184 KVENNGKGPQIFASRTDSGLLKRLFEQEVPEVYDGTVEIMSIAREAGDRAKIAVRSNDPD 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD-EDVG 306
ID VG CVG +G RVQ +V EL E +DI+ W D A ++ NAL+P+ V V+ + ED
Sbjct: 244 IDAVGTCVGAKGQRVQTIVNELHGENMDIIEWKEDPAEYIANALKPSEVIDVLFNEEDEN 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346
VIVP QLSLAIGRRGQN RLA++L + IDI +E +
Sbjct: 304 YCMVIVPDYQLSLAIGRRGQNARLAAKLVNFKIDIKSETD 343
>gi|116624262|ref|YP_826418.1| NusA antitermination factor [Candidatus Solibacter usitatus
Ellin6076]
gi|116227424|gb|ABJ86133.1| NusA antitermination factor [Candidatus Solibacter usitatus
Ellin6076]
Length = 542
Score = 340 bits (873), Expect = 3e-91, Method: Composition-based stats.
Identities = 162/426 (38%), Positives = 247/426 (57%), Gaps = 6/426 (1%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ Q + ++ EK ID +VL + D++ AAR Y + D +++P+TG I L+ + +V
Sbjct: 26 IFQSIEILSKEKGIDPQIVLDAVKDAMLIAARKHYRSTEDYVADMDPKTGAIKLYAVKKV 85
Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
VE VE+ + +++L AR D + ++GG V P GR++ Q+AKQVI QKVREAER+
Sbjct: 86 VEAVEDPSHEMTLAEARRIDSTAEVGGEVRIPKNTDALGRISAQTAKQVIFQKVREAERE 145
Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
+ E+ + GE+++ T+KRVE + I+DLG ++ + + E E GDRV+ I
Sbjct: 146 TVFNEYSGRTGELVNCTIKRVEGPDYILDLGKTEAKLPKKEQSRLEGYSVGDRVRCIIKL 205
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V + +GP VL+SR P+ +++LF EVPEIY+G V ++ +R+ G R K+AV S D +
Sbjct: 206 VDKSSKGPGVLVSRAAPELVMRLFEQEVPEIYDGTVAIRGCAREAGERTKIAVQSRDRDV 265
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307
D VGACVGM+G RVQ+++ ELR EKIDI+ +S DS F +AL PA V+++ +D
Sbjct: 266 DSVGACVGMKGMRVQSIIRELRGEKIDIIEYSEDSVVFATHALSPAKVSRITVIDPLEKH 325
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ--- 364
+EVIV QLSLAIG++GQNVRLA++L GW IDI +EEE +
Sbjct: 326 MEVIVDDSQLSLAIGKKGQNVRLAAKLLGWKIDIKSEEEKRQEVESQMAALVAPGAPVSV 385
Query: 365 --AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
+ E +A L+ G A +E+L + E+ + G E+ IQ Y +
Sbjct: 386 LIDYGMAEEMAVKLLENGVATIEKLGAMTPEELEVLPGIGPESVEGIQTAVVAYYSQFED 445
Query: 423 TLQKKI 428
+
Sbjct: 446 PASENA 451
>gi|260438329|ref|ZP_05792145.1| transcription termination factor NusA [Butyrivibrio crossotus DSM
2876]
gi|292808916|gb|EFF68121.1| transcription termination factor NusA [Butyrivibrio crossotus DSM
2876]
Length = 366
Score = 340 bits (872), Expect = 3e-91, Method: Composition-based stats.
Identities = 141/365 (38%), Positives = 224/365 (61%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
EL+ D + EK I + V++ + +S+ A ++ +G + +++ +TGD +
Sbjct: 2 NTELITALDILEKEKKISKKVLIEAIENSLLAACKNHFGKNENFTAKVDTKTGDFKVTAA 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
EVVE VE+ QISL A+ P +IG ++ + +FGR+AVQ++K I+QK+RE
Sbjct: 62 KEVVETVEDSVTQISLADAQMISPKYNIGDTINVEIKSAEFGRIAVQNSKSAILQKIREE 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y E+ K +I++G V R N++++LG +D ++ + + E +P DR+K Y
Sbjct: 122 ERQAVYNEYHAKEKDIVTGIVSRYAGNNLVINLGRADAILSEADMVKGEKYKPNDRIKVY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ +V+ E++G ++ +SR HP+F+ +LF EV E+ +G V++++++R+ GSR K+AV+S +
Sbjct: 182 VTEVKTEKKGLKIAVSRCHPEFVKRLFEAEVAELRDGTVEIRSIAREAGSRTKMAVWSKN 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
++DPVG+CVG+ GSRV AVV+EL EKIDI+ WS + A + NAL PA V V D +
Sbjct: 242 PNVDPVGSCVGVNGSRVNAVVSELNGEKIDIINWSKNPANLIENALSPAKVVYVAADAEE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
+VIVP QLSLAIGR GQN RLA++LTG+ IDI +E + D E
Sbjct: 302 KTAQVIVPDYQLSLAIGREGQNARLAARLTGFKIDIKSESQARDLGLLDEVESYADETAE 361
Query: 366 INVDE 370
+ E
Sbjct: 362 SDDAE 366
>gi|162454076|ref|YP_001616443.1| N utilization substance protein A [Sorangium cellulosum 'So ce 56']
gi|161164658|emb|CAN95963.1| N utilization substance protein A [Sorangium cellulosum 'So ce 56']
Length = 547
Score = 340 bits (872), Expect = 3e-91, Method: Composition-based stats.
Identities = 200/481 (41%), Positives = 291/481 (60%), Gaps = 35/481 (7%)
Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71
I D VA EK ID+ +++ + +I KAA+S++G ++ N +TG I LF+ + VVE
Sbjct: 17 ILDQVAKEKGIDKKILVETIEAAILKAAQSVFGPTRELEARFNEDTGQIDLFQYMTVVEA 76
Query: 72 VENYTCQISLKVA-------------------------RDRDPSIDIGGVVSDPLPPMDF 106
V +IS+ + RD + G ++ F
Sbjct: 77 VTEPEREISITDVDKLKLDATLGEELGFQVFWRPEDAEKARDQDKEYGDILKLKHGRTTF 136
Query: 107 GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVI 165
GR+A Q+AKQV++Q+VR+AERD + E+KD+ GE+I G V+R E N+IVD+G ++GV+
Sbjct: 137 GRIAAQTAKQVLLQRVRDAERDLIFNEYKDRKGELIRGIVRRFEKGNNIIVDIGRTEGVL 196
Query: 166 RRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225
E RE RPGDR+ +Y+ D+ RE RGPQV+LSR+ P+ + KLF EVPEIY GIV+
Sbjct: 197 TFREQTPRETYRPGDRIVAYVKDIDREARGPQVILSRSDPRLVEKLFEAEVPEIYEGIVR 256
Query: 226 VKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSAT 285
+ +V+R+PG+R+K+AV S D+ +DPVGACVGM+GSRVQAVV ELR EKIDIV + D A
Sbjct: 257 IVSVAREPGARSKIAVTSRDADVDPVGACVGMKGSRVQAVVQELRGEKIDIVPFDRDPAR 316
Query: 286 FVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345
+VI A++PA V KV++DE GR+E++VP E+LSLAIGR+GQNVRLA+QLT W +DII+E
Sbjct: 317 YVIAAIQPAEVHKVIVDEADGRMELVVPDEKLSLAIGRKGQNVRLAAQLTNWKLDIISET 376
Query: 346 EDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE-E 404
+ ++ + Q + V E IA + GF +EE++ + E+A+I G E
Sbjct: 377 KFKQMEEEAISALQQMDV----VTEQIAKSMYRLGFRALEEVSEASVEELAAIPGLGGVE 432
Query: 405 TAVEIQGRAREYLEGIDIT----LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTME 460
A I+ +A +E + + L E L I G+ + V L E G +++E
Sbjct: 433 AADRIKSQADTTMERLRQERIRSASSRTEPLTDRERLMFIRGVGDRTVVLLEEAGYRSVE 492
Query: 461 D 461
D
Sbjct: 493 D 493
>gi|227890227|ref|ZP_04008032.1| transcription elongation factor NusA [Lactobacillus johnsonii ATCC
33200]
gi|227849229|gb|EEJ59315.1| transcription elongation factor NusA [Lactobacillus johnsonii ATCC
33200]
Length = 416
Score = 340 bits (872), Expect = 4e-91, Method: Composition-based stats.
Identities = 140/403 (34%), Positives = 226/403 (56%), Gaps = 2/403 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+++ + EK I ++V++ + ++ A + Y ++ V + + G+ + +
Sbjct: 14 EMVEAFATLEKEKGIKQEVIVDAIKAALVAAYKKNYNQAQNVEVVFDEKKGNFKVNAIKT 73
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV++ ++SLK A + + + ++G + + P DFGR+A Q+AKQVI+Q++REAER
Sbjct: 74 VVDEVQDSRLEVSLKDALEINRAYEVGDEIRFEVTPKDFGRLAAQTAKQVIMQRLREAER 133
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ E+ EI++GTV+R + V V +GN + V+ ++ + E P D+V+ +
Sbjct: 134 EHIISEYSQYKDEIVTGTVERRDNRFVYVKIGNVEAVMPHNDQLPGETYNPQDKVRVLVT 193
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +G Q+ +SRT P + +LF EVPE+Y+G V++ +++R+ G R K+AV S+DS
Sbjct: 194 RVGSDSKGAQITVSRTAPALVKRLFEQEVPEVYDGTVEIVSIAREAGDRTKIAVKSNDSD 253
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305
IDPVG VG +G+RVQ +V EL E ID+V + + + F+ NAL PA V V DED
Sbjct: 254 IDPVGTLVGPKGARVQNIVNELGGENIDVVKYEDNPSDFIANALNPAEVIAVQFSGDEDD 313
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
VIVP QLSLAIG+RGQNVRLA++LTG+ IDI E + + +
Sbjct: 314 KNALVIVPDYQLSLAIGKRGQNVRLAARLTGYKIDIKPESQVEFVDSEGDDVEADQETTN 373
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408
NV +AE D ++ S D + E
Sbjct: 374 DNVSNEETPESIAEQIEDDPSDTFPNGEDVNSALNDDADKDEE 416
>gi|148657848|ref|YP_001278053.1| NusA antitermination factor [Roseiflexus sp. RS-1]
gi|148569958|gb|ABQ92103.1| NusA antitermination factor [Roseiflexus sp. RS-1]
Length = 442
Score = 340 bits (872), Expect = 4e-91, Method: Composition-based stats.
Identities = 144/339 (42%), Positives = 219/339 (64%), Gaps = 3/339 (0%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS---DIRVEINPETGDISL 62
+ + +A E+ I ++ ++ VM ++ A R G +I V ++P TG +
Sbjct: 2 KSDFYAAISQIASERGIPKEAIVEVMEKALATAYRRTLGPNPPPMEISVRLDPVTGMARV 61
Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+ +VV++V + +I L+ AR P +++G V P DFGR+A Q+AKQVI+Q +
Sbjct: 62 YAEKQVVDDVFDERFEIDLESARKIKPDVELGESVVVEATPRDFGRIAAQTAKQVILQGI 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182
+E ER+ Y E+ D+ GE+++ TV+R+ GNVI+++G ++ ++ E + + G R+
Sbjct: 122 KEVEREHIYGEYMDREGELVTATVQRIAKGNVILEMGKAEAILPPKEQVETDRYYHGQRL 181
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
K Y+ ++RRE RGP+++ SR H + +LF MEVPEIYNG V++K+++R+PG R K+AV
Sbjct: 182 KVYLMEIRREDRGPKLIASRAHKNLITRLFEMEVPEIYNGAVEIKSIAREPGIRTKVAVA 241
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
+ IDPVG+CVGMRG R+Q +V EL EKID+V WS + F+ NAL PA V +V L
Sbjct: 242 ARQEGIDPVGSCVGMRGIRIQNIVNELNGEKIDVVQWSSNPKEFIANALSPAQVVEVQLR 301
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
+D VIVP +QLSLAIG+ GQNVRLA++LTGW IDI
Sbjct: 302 DDEHAATVIVPDKQLSLAIGKEGQNVRLAAKLTGWRIDI 340
>gi|331082958|ref|ZP_08332078.1| transcription termination factor NusA [Lachnospiraceae bacterium
6_1_63FAA]
gi|330399953|gb|EGG79611.1| transcription termination factor NusA [Lachnospiraceae bacterium
6_1_63FAA]
Length = 384
Score = 340 bits (872), Expect = 4e-91, Method: Composition-based stats.
Identities = 144/344 (41%), Positives = 222/344 (64%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
ELL+ + + EKSI +D +L + S+ +A ++ +G +I+V INPET D +
Sbjct: 2 NTELLEALNILEKEKSISKDTLLEAIEQSLIQACKNHFGKADNIKVNINPETCDFGVLAE 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVEEV + +ISL A+ + +G +V+ + +FGR+A Q+AK VI+QK+RE
Sbjct: 62 KTVVEEVYDPVTEISLADAKMMNSQYGLGDIVNVEIKSKEFGRIATQNAKNVILQKIREE 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER + ++ K ++++G V+R N ++LG +D ++ +E + E +P +R+K Y
Sbjct: 122 ERKVIFDQYYGKEKDVVTGIVQRSLGRNYSINLGKADAILTENEQVKTEVFKPTERIKVY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I +V+ +GP++++SRTHP+ + +LF EV EI +G V+VK+++R+ GSR K+AV+S+D
Sbjct: 182 ILEVKDAPKGPKIMVSRTHPELVKRLFEAEVTEIKDGTVEVKSIAREAGSRTKIAVWSND 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DPVGACVG+ G+RV +VV ELR EKIDI+ WS + A + NAL PA V V D +
Sbjct: 242 PDVDPVGACVGINGARVNSVVEELRGEKIDIINWSDNPALLIENALSPAKVISVTADPEE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E +
Sbjct: 302 KSATVIVPDFQLSLAIGKEGQNARLAARLTGFKIDIKSETQARE 345
>gi|220927907|ref|YP_002504816.1| NusA antitermination factor [Clostridium cellulolyticum H10]
gi|219998235|gb|ACL74836.1| NusA antitermination factor [Clostridium cellulolyticum H10]
Length = 382
Score = 340 bits (871), Expect = 4e-91, Method: Composition-based stats.
Identities = 155/368 (42%), Positives = 242/368 (65%)
Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66
EL+ + + EK I +++++ + ++ A + +G+ +++V I+ TGD+ +F L
Sbjct: 3 AELILALEQLEKEKGIKKEIIIEAIEAALISAYKKNFGSAMNVKVNIDRVTGDVKVFALR 62
Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
+V E+ + IS+ A +P++DIG V + P FGR+A Q+AKQV++QK+REAE
Sbjct: 63 KVAEDPDVEAMDISIGEAAKLNPTLDIGDYVESEVTPRSFGRIAAQTAKQVVVQKLREAE 122
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
R Y EF +K +I++G ++R+E NVIVDLG ++ V+ E E R +R+KSYI
Sbjct: 123 RGIIYDEFYNKESDIVTGIIQRIEKRNVIVDLGKTEAVLGSTEQTPGEEYRFNERLKSYI 182
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
+V++ +GPQ++LSRTHP + +LF +EVPEI++G V++K++SR+PGSR KLAV+S D
Sbjct: 183 VEVKKTTKGPQIMLSRTHPGLVKRLFELEVPEIHDGTVEIKSISREPGSRTKLAVYSKDE 242
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
++DPVGACVG +G+RVQA+V ELR EKIDI+ WS D ++ ++L PA V +V +DE+
Sbjct: 243 NVDPVGACVGQKGTRVQAIVDELRGEKIDIIKWSNDPKDYISSSLSPAKVVRVDVDEEEK 302
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + + +K + +
Sbjct: 303 SAKVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQLRQSIEKQLFDDSLNNGYLD 362
Query: 367 NVDEIIAH 374
D +
Sbjct: 363 ETDTDSMN 370
>gi|332704826|ref|ZP_08424914.1| NusA antitermination factor [Desulfovibrio africanus str. Walvis
Bay]
gi|332554975|gb|EGJ52019.1| NusA antitermination factor [Desulfovibrio africanus str. Walvis
Bay]
Length = 494
Score = 340 bits (871), Expect = 4e-91, Method: Composition-based stats.
Identities = 177/430 (41%), Positives = 272/430 (63%), Gaps = 6/430 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
EL + D ++ ++ IDRD+++ + ++++ + YG DI V + +TG+I +F
Sbjct: 4 ELRKAIDQISKDRGIDRDLLVDTLEEAVRSSVVRKYGDELDIEVNFSEDTGEIEVFHYKV 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EVE+ +IS++ AR DP + + + L D GR+A QSAKQVIIQ++R+AE+
Sbjct: 64 VVDEVEDPNTEISMEDARQHDPGVQMDDDIGFKLNIEDLGRIAAQSAKQVIIQRMRDAEQ 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ + E+KD++GEI+SG ++R + I++LG ++ ++ R+E I +E + GDRV+ YI
Sbjct: 124 EIIFEEYKDRMGEIVSGIIQRRDRSGWIINLGRTEALLPREEQIPKERYKRGDRVQGYII 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
+V +E RGPQV+LSR+HP++M LF EVPE+ + +V++ V+RDPGSRAK+AV S D
Sbjct: 184 NVLKEGRGPQVILSRSHPEYMSALFRREVPEVADSVVKIMGVARDPGSRAKVAVMSRDRD 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVGACVG+RGSR+Q +V E R E+IDIVVW PD A + NAL PA++T++ +DE+
Sbjct: 244 VDPVGACVGIRGSRIQNIVQEFRGERIDIVVWKPDIADYARNALSPALITRITVDEEETL 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
+EV+VP +QL+LAIGR+GQNV+LAS+L GW IDI TE Q Q N
Sbjct: 304 LEVVVPDDQLTLAIGRKGQNVKLASKLLGWKIDIFTESRYGELHAAR-----QTLEQVAN 358
Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427
V EI + GF +EE+A + ++ I G E ++ A + L
Sbjct: 359 VVEINIERFLEAGFDSLEEVARAEDEDLLKIRGMSESKINDLHA-AIKLLAPSAYATPAD 417
Query: 428 IRELGVSEEL 437
+ E + E++
Sbjct: 418 MTEGEIGEDV 427
>gi|329667119|gb|AEB93067.1| N utilization substance protein A-like protein [Lactobacillus
johnsonii DPC 6026]
Length = 406
Score = 340 bits (871), Expect = 5e-91, Method: Composition-based stats.
Identities = 140/403 (34%), Positives = 226/403 (56%), Gaps = 2/403 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+++ + EK I ++V++ + ++ A + Y ++ V + + G+ + +
Sbjct: 4 EMVEAFATLEKEKGIKQEVIVDAIKAALVAAYKKNYNQAQNVEVVFDEKKGNFKVNAIKT 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV++ ++SLK A + + + ++G + + P DFGR+A Q+AKQVI+Q++REAER
Sbjct: 64 VVDEVQDSRLEVSLKDALEINRAYEVGDEIRFEVTPKDFGRLAAQTAKQVIMQRLREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ E+ EI++GTV+R + V V +GN + V+ ++ + E P D+V+ +
Sbjct: 124 EHIISEYSQYKDEIVTGTVERRDNRFVYVKIGNVEAVMPHNDQLPGETYNPQDKVRVLVT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +G Q+ +SRT P + +LF EVPE+Y+G V++ +++R+ G R K+AV S+DS
Sbjct: 184 RVGSDSKGAQITVSRTAPDLVKRLFEQEVPEVYDGTVEIVSIAREAGDRTKIAVKSNDSD 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305
IDPVG VG +G+RVQ +V EL E ID+V + + + F+ NAL PA V V DED
Sbjct: 244 IDPVGTLVGPKGARVQNIVNELGGENIDVVKYEDNPSDFIANALNPAEVIAVQFSGDEDD 303
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
VIVP QLSLAIG+RGQNVRLA++LTG+ IDI E + + +
Sbjct: 304 KNALVIVPDYQLSLAIGKRGQNVRLAARLTGYKIDIKPESQVEFVDSEGDDVEADQETTN 363
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408
NV +AE D ++ S D + E
Sbjct: 364 DNVSNEETPESIAEQIEDDPSDKFPNGEDVNSALNDDADKDEE 406
>gi|126698905|ref|YP_001087802.1| transcription elongation protein [Clostridium difficile 630]
gi|255100326|ref|ZP_05329303.1| transcription elongation protein [Clostridium difficile QCD-63q42]
gi|255306264|ref|ZP_05350436.1| transcription elongation protein [Clostridium difficile ATCC 43255]
gi|115250342|emb|CAJ68164.1| Transcription elongation protein [Clostridium difficile]
Length = 384
Score = 339 bits (870), Expect = 5e-91, Method: Composition-based stats.
Identities = 148/348 (42%), Positives = 229/348 (65%), Gaps = 2/348 (0%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E ++ D + ++ ID+++++ + ++ A + +G+ ++RVE + + GDI +F
Sbjct: 2 NHEFMEALDELVVDRGIDKEILIDTIEQALLTAYKKNFGSAQNVRVEFDRDKGDIKVFSQ 61
Query: 66 LEVVEEVENYTC--QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
VV+E + Y +I L AR+ +P+ ++G ++ + P +FGR+A Q+AKQV++Q++R
Sbjct: 62 RVVVDESDLYDTFLEIELADAREINPNYELGDIIEHEVTPKNFGRIAAQTAKQVVVQRIR 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183
EAER+ Y EF +K EI++G V R V V+LG +G++ + E I EN + G ++K
Sbjct: 122 EAEREIVYNEFIEKENEIVTGEVARANKNVVYVNLGRIEGIMTQSEQIPFENYKAGQKIK 181
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
YI +V++ +GPQ+++SR+HP + +LF EVPEIY GIVQ+K+V+R+ GSR K+AV S
Sbjct: 182 FYILEVKKTNKGPQIVVSRSHPGLVKRLFEEEVPEIYEGIVQIKSVAREAGSRTKMAVRS 241
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
D IDP+GACVG +G RV+ +V EL DEKIDI+ +S D A F+ AL P+ V +V +DE
Sbjct: 242 IDEKIDPIGACVGPKGLRVKNIVDELGDEKIDIIKYSEDPAEFISAALSPSKVVRVDIDE 301
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351
D VIVP QLSLAIG+ GQN RLA++LT W IDI +E +
Sbjct: 302 DEKSALVIVPDYQLSLAIGKEGQNARLAAKLTNWKIDIKSESQAEQEM 349
>gi|291279908|ref|YP_003496743.1| N utilization substance protein A [Deferribacter desulfuricans
SSM1]
gi|290754610|dbj|BAI80987.1| N utilization substance protein A [Deferribacter desulfuricans
SSM1]
Length = 443
Score = 339 bits (870), Expect = 5e-91, Method: Composition-based stats.
Identities = 170/429 (39%), Positives = 267/429 (62%), Gaps = 9/429 (2%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
EL ++AD + EK + ++++ + DSI+ A YG ++D V ++ E G I +
Sbjct: 1 MKELAKVADEIGKEKGLSKELLKEALEDSIKAAVIRKYGRLTDPEVTVDIERGKIDIKVP 60
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
EVVE VEN +I L+ A+ P ++G V+ P+ + GR A AKQ +++K+REA
Sbjct: 61 KEVVESVENKKYEILLEDAKKIKPDAELGDVIMVPISFQELGRQAATVAKQRMVEKIREA 120
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
E+ Y EF++K+G+I++G V + + ++IV +G ++ + + E I + GD V++
Sbjct: 121 EKQVVYDEFQNKIGQIVTGVVLKSDKDSMIVSIGKTEAFMPKREIIPGDYYDRGDYVRAL 180
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ ++R + PQ++LSRTHP F+ KLF +E+PE++ GI++VKAV+R+PG RAK+AV+S +
Sbjct: 181 LLEIRVIRGWPQLILSRTHPDFLKKLFEVEIPEVFEGIIEVKAVAREPGDRAKVAVYSKN 240
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
S+IDPVGAC+G++G+R+ A+ ELR EKID++ WSPD FV NAL PA V + ED
Sbjct: 241 SNIDPVGACIGLKGTRINAISNELRGEKIDVIEWSPDPVKFVCNALSPADVILTNIFEDE 300
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
IEV+VP +QLSLAIG+RGQNVRLA+ LTGW +D++ E E +I R++ E+ + +
Sbjct: 301 KTIEVVVPDDQLSLAIGKRGQNVRLAAMLTGWRLDVLKESEYNIIRKERLQEQEEELKEF 360
Query: 366 INV---------DEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416
+ DE + L+ G DVE+L+ + E+ G +E+ AV I A +Y
Sbjct: 361 YEIYNLENIDVLDENMISKLIEHGIDDVEKLSTASVDEVVMALGVNEDQAVVIINSAIDY 420
Query: 417 LEGIDITLQ 425
L L
Sbjct: 421 LTEKLEELD 429
>gi|212704654|ref|ZP_03312782.1| hypothetical protein DESPIG_02717 [Desulfovibrio piger ATCC 29098]
gi|212671888|gb|EEB32371.1| hypothetical protein DESPIG_02717 [Desulfovibrio piger ATCC 29098]
Length = 438
Score = 339 bits (870), Expect = 6e-91, Method: Composition-based stats.
Identities = 173/427 (40%), Positives = 267/427 (62%), Gaps = 7/427 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
LEL + D ++ +K +DRD+++ + D+++ + + + D+ V N TGDI +++
Sbjct: 2 NLELKKAIDQISKDKGLDRDMLIKTLEDAVRTSVQRRFSEDMDVEVRYNDNTGDIEVYQF 61
Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
VVE+ VEN I + AR DPS+ I V + D GR+A QSAKQVIIQ++R
Sbjct: 62 KIVVEDGEVENEDTHIGITEARTHDPSVQIDDEVGFRVKVEDLGRIAAQSAKQVIIQRMR 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183
+AE++ Y E+KD++GEI+SG V+R + G +V+LG ++ ++ R+E I RE+ + DRV+
Sbjct: 122 DAEQEIIYDEYKDRMGEIVSGIVQRRDKGGWVVNLGRTEAILPREEQIPREHYKRNDRVQ 181
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+ I DVR+E RGPQV++SR H +M LF EVPE+ +G+VQ+ V+RDPGSRAK+AV S
Sbjct: 182 AIIIDVRKEGRGPQVVISRAHRDYMAALFRREVPEVDDGVVQIMGVARDPGSRAKVAVLS 241
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
+ +DPVGACVG+RGSR+Q +V ELR E+IDIVVWSPD AT+ NAL PA+V+++V+DE
Sbjct: 242 RERDVDPVGACVGVRGSRIQNIVQELRGERIDIVVWSPDIATYARNALAPAMVSRIVVDE 301
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
+ +EVIVP +QL+ AIGR+GQNV+LA++L GW +DI TE +
Sbjct: 302 EENLLEVIVPDDQLTNAIGRKGQNVKLAARLLGWKVDIFTETRYNEANAIGH-----GLE 356
Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423
Q +V E+ + L+ G+ ++ L E++ + +++ +
Sbjct: 357 QVASVAEVSMNQLLEAGYTSLDLLRQATDEELSDKLAISDSRIADLRSAINFLAPVAEPE 416
Query: 424 LQKKIRE 430
+ +
Sbjct: 417 PRAAEED 423
>gi|220903347|ref|YP_002478659.1| transcription elongation factor NusA [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
gi|219867646|gb|ACL47981.1| NusA antitermination factor [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 449
Score = 339 bits (870), Expect = 6e-91, Method: Composition-based stats.
Identities = 173/429 (40%), Positives = 270/429 (62%), Gaps = 7/429 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
LEL + D ++ +K +DR++++ + D+++ + + D+ V N ETGDI +++
Sbjct: 2 NLELKKAIDQISKDKGLDRNMLIDTLEDAVRTSVLRRFSEDMDVEVSYNDETGDIEVYQF 61
Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
V+ + V N QI L AR+ DPS+ + + + D GR+A QSAKQVIIQ++R
Sbjct: 62 KIVMADGDVANPDTQIELAEAREHDPSVQVDDEMGFRVKVEDLGRIAAQSAKQVIIQRMR 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183
+AE++ Y E+KD+VGEI+SG V+R + G +V+LG ++ ++ R+E I RE+ + GDRV+
Sbjct: 122 DAEQEIIYEEYKDRVGEIVSGIVQRRDKGGWVVNLGRTEAILPREEQIPREHYKRGDRVQ 181
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+ I +VR+E RGPQV++SR H +M LF EVPE+ +G+VQ+ V+RDPGSRAK+AV S
Sbjct: 182 ALIIEVRQEGRGPQVVISRAHRDYMAALFRREVPEVDDGVVQIMGVARDPGSRAKVAVLS 241
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
+ +DPVGACVG+RGSR+Q +V EL E+IDIVVWS D AT+ NAL PA+V+++V+DE
Sbjct: 242 RERDVDPVGACVGVRGSRIQNIVQELHGERIDIVVWSADIATYARNALAPALVSRIVVDE 301
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
+ +EVIVP +QL+ AIGR+GQNV+LA++L GW +DI TE +
Sbjct: 302 EENLLEVIVPDDQLTNAIGRKGQNVKLAARLLGWKVDIFTETRYNEANAIGH-----GLE 356
Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423
Q +V E+ L+ G++ +++L E++ +++ ++ T
Sbjct: 357 QVASVAEVSIEALLGAGYSSLDQLRQATDQELSDKLTISASRIADLRSAINFLAPVVEET 416
Query: 424 LQKKIRELG 432
+ ELG
Sbjct: 417 PESSAVELG 425
>gi|332981612|ref|YP_004463053.1| NusA antitermination factor [Mahella australiensis 50-1 BON]
gi|332699290|gb|AEE96231.1| NusA antitermination factor [Mahella australiensis 50-1 BON]
Length = 349
Score = 339 bits (870), Expect = 7e-91, Method: Composition-based stats.
Identities = 142/348 (40%), Positives = 231/348 (66%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E +Q + EK + +DV+L + ++ A + YGT +++ V+IN +GDI ++
Sbjct: 2 NDEFMQALYKIEKEKHLPKDVLLQAIQSALLSAYKKDYGTANNVSVDINANSGDIKVYAA 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+VVE+V+N +I L ARD P + +G +++ + P DF R+A ++A+ +++QK+ E
Sbjct: 62 KKVVEDVKNSAVEIDLYKARDIRPDVQLGDIINIEVTPKDFRRIAAKAARDIVLQKIHEV 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
E+D E+ +K GEI++ TV R++ NV +DLG +G++ +ET+ E + DR+K Y
Sbjct: 122 EKDIILDEYSEKEGEILTATVARLDRKNVYLDLGKIEGIMPMNETVPSEIYKVNDRLKVY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I + ++ + P V++SR+HP + +LF +E+PEI++GIV ++A++R+ G R+K+AV+S
Sbjct: 182 ILEAKKGGKSPNVIVSRSHPGLVKRLFELEIPEIHDGIVDIRAIAREAGHRSKVAVYSKY 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
IDP+G+C+G +G+R+Q ++ ELR E+IDIV WS F+ NAL PA V +V+L+E
Sbjct: 242 DKIDPIGSCIGPKGTRIQTIMNELRGERIDIVEWSLMPERFIANALSPAKVLEVILNEKE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353
VIVPK QLSLAIG+ GQN RLA++LTGW IDI T ++ +N K
Sbjct: 302 KSARVIVPKNQLSLAIGKEGQNARLAAKLTGWKIDIKTPDQQEVNETK 349
>gi|268319261|ref|YP_003292917.1| transcription elongation factor NusA [Lactobacillus johnsonii
FI9785]
gi|262397636|emb|CAX66650.1| transcription elongation factor NusA [Lactobacillus johnsonii
FI9785]
Length = 394
Score = 339 bits (869), Expect = 8e-91, Method: Composition-based stats.
Identities = 137/390 (35%), Positives = 222/390 (56%), Gaps = 2/390 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+++ + EK I ++V++ + ++ A + Y ++ V + + G+ + +
Sbjct: 4 EMVEAFATLEKEKGIKQEVIVDAIKAALVAAYKKNYNQAQNVEVVFDEKKGNFKVNAIKT 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV++ ++SLK A + + + ++G + + P DFGR+A Q+AKQVI+Q++REAER
Sbjct: 64 VVDEVQDSRLEVSLKDALEINRAYEVGDEIRFEVTPKDFGRLAAQTAKQVIMQRLREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ E+ EI++GTV+R + V V +GN + V+ ++ + E P D+V+ +
Sbjct: 124 EHIISEYSQYKDEIVTGTVERRDNRFVYVKIGNVEAVMPHNDQLPGETYNPQDKVRVLVT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +G Q+ +SRT P + +LF EVPE+Y+G V++ +++R+ G R K+AV S+DS
Sbjct: 184 RVGSDSKGAQITVSRTAPDLVKRLFEQEVPEVYDGTVEIVSIAREAGDRTKIAVKSNDSD 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305
IDPVG VG +G+RVQ +V EL E ID+V + + + F+ NAL PA V V DED
Sbjct: 244 IDPVGTLVGPKGARVQNIVNELGGENIDVVKYEDNPSDFIANALNPAEVIAVQFSGDEDD 303
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
VIVP QLSLAIG+RGQNVRLA++LTG+ IDI E + + +
Sbjct: 304 KNALVIVPDYQLSLAIGKRGQNVRLAARLTGYKIDIKPESQVEFVDSEGDDVEADQETTN 363
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEI 395
NV +AE D ++
Sbjct: 364 DNVSNEETPEAIAEQIEDDPSDKFPNGEDV 393
>gi|118579397|ref|YP_900647.1| transcription elongation factor NusA [Pelobacter propionicus DSM
2379]
gi|118502107|gb|ABK98589.1| NusA antitermination factor [Pelobacter propionicus DSM 2379]
Length = 401
Score = 339 bits (869), Expect = 8e-91, Method: Composition-based stats.
Identities = 173/353 (49%), Positives = 238/353 (67%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+ L + + EK IDR VVL M ++ AA Y D+ N +TG++ LF
Sbjct: 4 NISLKHAIEQIVKEKGIDRQVVLEAMEQAVLTAANKKYRNTRDLEARYNSDTGEVELFEF 63
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+ VVEEVE+ +ISL AR+ DP +++G + + + F R+A Q+AKQVIIQKVREA
Sbjct: 64 VIVVEEVEDSYKEISLDEAREIDPDVEVGDSLGEKIDSSGFTRIAAQTAKQVIIQKVREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER+ + E+ D+ E+I+G V+R E G++++DLG ++ V+ E + RE RPGDR+++
Sbjct: 124 ERETIFNEYSDRQWEVITGMVRRFEKGDLLIDLGRAEAVLPSKEQMPREVYRPGDRIRAI 183
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I D+R +GPQ++LSRTHP + KLF EVPE+ GIV++ A+ RDPGSRAKLAV S+D
Sbjct: 184 ITDIRVTPKGPQIILSRTHPSMLAKLFEAEVPEVAEGIVEINAIVRDPGSRAKLAVSSND 243
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DPVGACVGMRGSRVQ VV+ELR EKIDI+ WS D A F NAL PA V+KV +DED
Sbjct: 244 PDVDPVGACVGMRGSRVQNVVSELRGEKIDIIPWSEDIARFACNALSPAQVSKVFVDEDN 303
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
+EV+V +QLSLAIG+RGQNV LA++LTG IDI +E + + + +
Sbjct: 304 RALEVVVADDQLSLAIGKRGQNVSLAARLTGCRIDIKSEAKAAEAELQAYASY 356
>gi|319892283|ref|YP_004149158.1| Transcription termination protein NusA [Staphylococcus
pseudintermedius HKU10-03]
gi|317161979|gb|ADV05522.1| Transcription termination protein NusA [Staphylococcus
pseudintermedius HKU10-03]
Length = 392
Score = 339 bits (869), Expect = 9e-91, Method: Composition-based stats.
Identities = 154/388 (39%), Positives = 236/388 (60%), Gaps = 1/388 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + + EK I R+V++ + ++ A + Y + ++RVE+N ++G + E
Sbjct: 5 ELLLATEYLEKEKKIPREVLVDAIEAALITAYKKNYDSARNVRVELNLDSGTFRVISRKE 64
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV ++ +I L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER
Sbjct: 65 VVEEVFDHREEIDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y EF DK +I++G + RV++ V V+LG ++ V+ E E P +R+K Y+
Sbjct: 125 EILYEEFIDKEDDIMTGVIDRVDHRYVYVNLGRTEAVLSEAERSPNETYLPNERIKVYVN 184
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SR+HP + +LF EVPEI+ G V+VK+V+R+ G R+K++V+S +
Sbjct: 185 KVEQTTKGPQIFVSRSHPGLLKRLFEQEVPEIFEGTVEVKSVAREAGDRSKISVYSENPD 244
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
ID VGACVG +G+RV+AVV EL EKIDIV WS D FV NAL P+ V V++DE+
Sbjct: 245 IDAVGACVGAKGARVEAVVAELGGEKIDIVQWSEDPKVFVRNALSPSQVIDVIVDEENQS 304
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE-DSINRQKDFNERTQFFMQAI 366
VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + ++ + + A+
Sbjct: 305 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAKALGIGEKEATTVETEPVAM 364
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISE 394
+E+ E D L
Sbjct: 365 TAEELDLEATTDEHIEDNASLEDESKEN 392
>gi|42519362|ref|NP_965292.1| transcription elongation factor NusA [Lactobacillus johnsonii NCC
533]
gi|41583650|gb|AAS09258.1| N utilization substance protein A-like protein [Lactobacillus
johnsonii NCC 533]
Length = 406
Score = 338 bits (868), Expect = 1e-90, Method: Composition-based stats.
Identities = 140/403 (34%), Positives = 226/403 (56%), Gaps = 2/403 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+++ + EK I ++V++ + ++ A + Y ++ V + + G+ + +
Sbjct: 4 EMVEAFATLEKEKGIKQEVIVDAIKAALVAAYKKNYNQAQNVEVVFDEKKGNFKVNAIKT 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV++ ++SLK A + + + ++G + + P DFGR+A Q+AKQVI+Q++REAER
Sbjct: 64 VVDEVQDSRLEVSLKDALEINRAYEVGDEIRFEVTPKDFGRLAAQTAKQVIMQRLREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ E+ EI++GTV+R + V V +GN + V+ ++ + E P D+V+ +
Sbjct: 124 EHIISEYSQYKDEIVTGTVERRDNRFVYVKIGNVEAVMPHNDQLPGETYNPQDKVRVLVT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +G Q+ +SRT P + +LF EVPE+Y+G V++ +++R+ G R K+AV S+DS
Sbjct: 184 RVGSDSKGAQITVSRTAPDLVKRLFEQEVPEVYDGTVEIVSIAREAGDRTKIAVKSNDSD 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305
IDPVG VG +G+RVQ +V EL E ID+V + + + F+ NAL PA V V DED
Sbjct: 244 IDPVGTLVGPKGARVQNIVNELGGENIDVVKYEDNPSDFIANALNPAEVIAVQFSGDEDD 303
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
VIVP QLSLAIG+RGQNVRLA++LTG+ IDI E + + +
Sbjct: 304 KNALVIVPDYQLSLAIGKRGQNVRLAARLTGYKIDIKPESQVEFVDSEGDDVEADQETTN 363
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408
NV +AE D ++ S D + E
Sbjct: 364 DNVSNEETPESIAEQIEDEPSDKFPNGEDVNSALNDDADKDEE 406
>gi|166030876|ref|ZP_02233705.1| hypothetical protein DORFOR_00556 [Dorea formicigenerans ATCC
27755]
gi|166029143|gb|EDR47900.1| hypothetical protein DORFOR_00556 [Dorea formicigenerans ATCC
27755]
Length = 401
Score = 338 bits (867), Expect = 1e-90, Method: Composition-based stats.
Identities = 153/399 (38%), Positives = 237/399 (59%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
ELL+ + + EK I ++ +L + +S+ A ++ +G +I+V ++ +T D LF
Sbjct: 2 NTELLEALNILEKEKEISKETLLDAIENSLLNACKNHFGKADNIKVIMDHDTCDYQLFAE 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVE VE+ QISL A D D+G +V P+ FGR+A Q+AK +I+QK+RE
Sbjct: 62 KTVVETVEDPLEQISLDEASQLDGHYDLGDIVRVPIESKSFGRIATQNAKNLILQKIREE 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y ++ +K +I++G V+R NV ++LG +D ++ +E + E +P +R+K Y
Sbjct: 122 ERKVVYDQYFEKEKDIVTGIVQRYVGKNVSINLGKADAMLTENEQVKGEVFKPTERIKLY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ +V+ +GP++L+SRTHP+ + +LF EV E+ +GIV++K+++R+ GSR K+AV+S+D
Sbjct: 182 VVEVKNTTKGPKILVSRTHPELVKRLFESEVTEVRDGIVEIKSIAREAGSRTKIAVWSND 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DPVGACVGM G+RV A+V ELR EKIDI+ WS + A + NAL PA V V+ D D
Sbjct: 242 PDVDPVGACVGMNGARVNAIVNELRGEKIDIINWSDNPAILIENALSPAKVISVMADPDE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
+ VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + + + N
Sbjct: 302 KKASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQAIESGELPENYMELGEGVY 361
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404
+ +V+ A + E EE
Sbjct: 362 EEDVYDENEEYPEDADVEVDTEAENETEANVQPEEDGEE 400
>gi|227892601|ref|ZP_04010406.1| transcription elongation factor NusA [Lactobacillus ultunensis DSM
16047]
gi|227865586|gb|EEJ73007.1| transcription elongation factor NusA [Lactobacillus ultunensis DSM
16047]
Length = 413
Score = 338 bits (867), Expect = 1e-90, Method: Composition-based stats.
Identities = 144/399 (36%), Positives = 227/399 (56%), Gaps = 6/399 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + K I +DV++ + ++ A + Y ++ V+ + G+ + +
Sbjct: 19 EMLEAFATLEKTKGIKQDVIIDAIKAALVAAYKKNYNQAQNVEVDFDERKGNFKVMAVKT 78
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REAER
Sbjct: 79 VVDEVQDDRLEVSLKDALAINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREAER 138
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ E+ E+++GTV+R + V V +GN + V+ + +S E P D+++ +
Sbjct: 139 NHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAVMPHRDQMSNEVYNPQDQIRVLVT 198
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +G Q+ +SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D +
Sbjct: 199 HVGSDSKGAQITVSRTAPDMVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSNDPN 258
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT--KVVLDEDV 305
IDPVG CVG +G+RVQ VV EL E IDIV + D + F+ NAL PA V + DED
Sbjct: 259 IDPVGTCVGQKGTRVQNVVNELGGENIDIVKYEDDPSDFIANALNPAEVIAVQFGEDEDE 318
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E +K + T+ A
Sbjct: 319 KSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDEKSTDNTTETDNNA 378
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404
N E + + I E S + EE
Sbjct: 379 NNEAENTK----NSDSEEASDKTSSDIDENTSADDNTEE 413
>gi|148270198|ref|YP_001244658.1| transcription elongation factor NusA [Thermotoga petrophila RKU-1]
gi|147735742|gb|ABQ47082.1| NusA antitermination factor [Thermotoga petrophila RKU-1]
Length = 344
Score = 338 bits (867), Expect = 1e-90, Method: Composition-based stats.
Identities = 141/336 (41%), Positives = 222/336 (66%), Gaps = 1/336 (0%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
LL+ D + EK I ++ V+ ++ ++ A R +G ++ V I+ TG+I +++LLEV
Sbjct: 5 LLEALDQLEEEKGISKEEVIPILEKALVSAYRKNFGNSKNVEVVIDRNTGNIKVYQLLEV 64
Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
VEEVE+ QIS++ A+ DP ++G VV L +FGR+A Q+AKQV+IQ++RE E++
Sbjct: 65 VEEVEDPATQISIEEAKKVDPLAEVGSVVKKELNVKNFGRIAAQTAKQVLIQRIRELEKE 124
Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
+Q+ ++ + G + + V RV + +G + + + E I E + GD VK YI D
Sbjct: 125 KQFEKYSELKGTVTTAEVIRVTGEWADIRIGKLETRLPKKEWIPDEEIEAGDLVKVYIID 184
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V + +GP++L+SR P+F++ L +E+PE+ NGIV++KA++R+PG R K+AV S+D ++
Sbjct: 185 VVKTTKGPKILVSRRVPEFVIGLMKLEIPEVENGIVEIKAIAREPGVRTKVAVSSNDPNV 244
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307
DP+GAC+G GSR+ A++ EL+ EK+D++ WS D + NAL PA V +V + D++
Sbjct: 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKWSDDPKQLIANALAPATVIEVEILDKENKA 304
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343
VIVP QLSLAIG+ GQN RLA++LTGW IDI
Sbjct: 305 ARVIVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340
>gi|153855238|ref|ZP_01996404.1| hypothetical protein DORLON_02418 [Dorea longicatena DSM 13814]
gi|149752237|gb|EDM62168.1| hypothetical protein DORLON_02418 [Dorea longicatena DSM 13814]
Length = 399
Score = 338 bits (867), Expect = 1e-90, Method: Composition-based stats.
Identities = 147/341 (43%), Positives = 227/341 (66%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
ELL+ + + EK I ++ +L + +S+ A ++ +G +I++ +N ET + L+
Sbjct: 2 NTELLEALNILEKEKDISKETLLDAIENSLMNACKNHFGKTDNIKLIMNKETCEYQLYAE 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVEEVE+ QISL+ A++ D ++G +V P+ FGR+A Q+AK +I+QK+RE
Sbjct: 62 KTVVEEVEDKLEQISLEDAKEIDSKFELGDIVHIPIESKSFGRIATQNAKNLILQKIREE 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y ++ +K +I++G V+R NV ++LG +D ++ +E + E +P +R+K Y
Sbjct: 122 ERKVVYDQYFEKEKDIVTGIVQRYVGKNVSINLGKADAMLTENEQVKGEVFKPTERIKLY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I +V+ +GP++L+SRTHP+ + +LF EV E+ +GIV++K+++R+ GSR K+AV+S+D
Sbjct: 182 IVEVKNTTKGPKILVSRTHPELVKRLFESEVTEVKDGIVEIKSIAREAGSRTKIAVWSND 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DPVGACVGM G+RV A+V ELR EKIDI+ WS + A + NAL PA V V+ D D
Sbjct: 242 PDVDPVGACVGMNGARVNAIVNELRGEKIDIINWSDNPAILIENALSPAKVISVMADPDE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346
VIVP QLSLAIG+ GQN RLA++LTG+ IDI E +
Sbjct: 302 KTASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKNETQ 342
>gi|269469301|gb|EEZ80807.1| transcription elongation factor [uncultured SUP05 cluster
bacterium]
Length = 390
Score = 338 bits (867), Expect = 1e-90, Method: Composition-based stats.
Identities = 171/413 (41%), Positives = 253/413 (61%), Gaps = 23/413 (5%)
Query: 101 LPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN 160
+ +FGR+A Q KQVIIQKVREAER+ ++ +VGE+I TVKRV+ GNV VD+G
Sbjct: 1 METEEFGRIAAQIFKQVIIQKVREAEREVIVDDYTKRVGEVIIVTVKRVDRGNVYVDMGG 60
Query: 161 SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIY 220
DG+I + + I E+ R DR+++YI DV+ RG Q+ LSRT P+ M++LF MEVPEI
Sbjct: 61 VDGMISKFDLIPNESTRKNDRLRAYIKDVKSTPRGAQIFLSRTAPEMMIQLFEMEVPEIS 120
Query: 221 NGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280
G++++ +RDPG R+KLAV S D +DP+G+C+GMRGSRVQAV EL E++DI++W
Sbjct: 121 EGVIEIMGGARDPGLRSKLAVKSKDKRLDPIGSCIGMRGSRVQAVSNELNGERVDIILWD 180
Query: 281 PDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340
D A FVINA+ PA V+ +V+DED +++ V +QL+LAIGR GQN++LAS+LTGW ++
Sbjct: 181 EDPAQFVINAMAPAEVSSIVVDEDKNSMDIAVEDDQLALAIGRGGQNIKLASRLTGWKLN 240
Query: 341 IITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEG 400
+++ E + ++ + + + + VD +A +L+ EGF ++E+A + SIE
Sbjct: 241 VMSINESEDKQAEENQKVSGKLAEQLGVDSEVAGVLIEEGFGSIDEVADADADALESIEE 300
Query: 401 FDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTME 460
FD E+Q RA + + + SE L + G+D + AL E I T++
Sbjct: 301 FDVSMVEELQERASDAQLVQA------LGDAESSEVLMGVEGMDEDLVQALIEAEIATVD 354
Query: 461 DLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
DLA S+D+LL E K++ SMI+ AR GW +
Sbjct: 355 DLAELSIDELLDIQE-----------------MDKEKASSMIMTARENEGWFD 390
>gi|149925033|ref|ZP_01913351.1| transcription termination factor NusA [Plesiocystis pacifica SIR-1]
gi|149814097|gb|EDM73723.1| transcription termination factor NusA [Plesiocystis pacifica SIR-1]
Length = 461
Score = 338 bits (867), Expect = 1e-90, Method: Composition-based stats.
Identities = 178/433 (41%), Positives = 269/433 (62%), Gaps = 32/433 (7%)
Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71
+ DAV EK+I RDV++ + ++ AA+ ++ +I + ETG+++LF++L VVE
Sbjct: 10 VIDAVCQEKNISRDVLVDTVEQAVATAAKRVF-ADREIEASFDLETGNVNLFQVLYVVET 68
Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMD-------------------------F 106
VE ++S+ AR +IG + + ++ F
Sbjct: 69 VELPMREMSIDQARRSGLEAEIGDELLFQIFYLEDDRKQAEDQAKQYPEIPALQKVNTAF 128
Query: 107 GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGV 164
GR+A Q+AKQVIIQ+VREAER+ Y +KDK GE+++G V+R E G+++V++ G ++ +
Sbjct: 129 GRIAAQTAKQVIIQRVREAERENLYDRYKDKKGELMTGIVRRFERGSIVVEVDNGRAEAI 188
Query: 165 IRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224
+ + + RE+LRPGDR+ +++ DV + RGPQ++LSRTH + KLF EVPEI+ GIV
Sbjct: 189 LPSRDQVPRESLRPGDRIVAFVKDVDKSARGPQIILSRTHKGLVEKLFEHEVPEIFEGIV 248
Query: 225 QVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSA 284
+++A +R+PG+R+K+AV S D +DPVGACVGMRGSRVQAVV ELR EKIDIV + D A
Sbjct: 249 RIEACAREPGARSKIAVSSRDRDVDPVGACVGMRGSRVQAVVQELRGEKIDIVPFDEDPA 308
Query: 285 TFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344
FV NA++PA V++V++D + +E++VP ++LSLAIG+RGQNVRLAS+LTGW IDI +
Sbjct: 309 RFVCNAIQPAQVSRVLIDAERHTMELVVPDDKLSLAIGKRGQNVRLASRLTGWRIDIHSR 368
Query: 345 EEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404
+ ++ E V +A L G+ + +LA + E+AS+ G D +
Sbjct: 369 SKIRQMERRSQAEIAAIP----GVGHELAAQLFDLGWRTLRDLAVANMEELASVIGGDLD 424
Query: 405 TAVEIQGRAREYL 417
A I A E
Sbjct: 425 AADAIIDTANEAA 437
>gi|323340011|ref|ZP_08080277.1| transcription termination factor NusA [Lactobacillus ruminis ATCC
25644]
gi|323092517|gb|EFZ35123.1| transcription termination factor NusA [Lactobacillus ruminis ATCC
25644]
Length = 401
Score = 338 bits (866), Expect = 2e-90, Method: Composition-based stats.
Identities = 151/398 (37%), Positives = 227/398 (57%), Gaps = 19/398 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL DA+ EK I ++V++ + ++ A + YG +++V + GDI +F + E
Sbjct: 4 ELLNALDALETEKGIKKEVIIDALEQALVSAYKKNYGQAQNVKVTFDARRGDIKVFAVKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV EV + ++SL A + + + +IG + + P DFGR+A Q+AKQVI+Q+VRE ER
Sbjct: 64 VVNEVLDSCLEVSLSDALEINRAYEIGDTIDFEVTPRDFGRIAAQTAKQVIMQRVREEER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y ++ EI++G V+R + V V+LGN + V+ + + + E DR+K Y+Y
Sbjct: 124 QMIYNQYSRYENEIMTGEVERRDSRYVYVNLGNVEAVLSKRDQVPGEVYNSHDRIKVYVY 183
Query: 188 DV------------------RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAV 229
V +R RGPQV +SR+HP + ++F EVPEI++G V++K++
Sbjct: 184 KVVDPNENQNAEQNEEEGKKKRRNRGPQVYVSRSHPDLLKRMFENEVPEIFDGTVEIKSI 243
Query: 230 SRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN 289
+R+ G RAK+AV S IDP+G CVG RG RV+A+V EL EK+DIV WS D + ++
Sbjct: 244 AREAGDRAKIAVCSDQEGIDPIGTCVGPRGERVKAIVEELNGEKMDIVEWSEDPSEYIKA 303
Query: 290 ALRPAIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
AL+PA + +V D ED V+VP QLSLAIG+RGQN RLA+ LTG+ IDI +E
Sbjct: 304 ALKPAEILEVRFDREDDHACTVVVPDTQLSLAIGKRGQNARLAAHLTGYKIDIKSESNME 363
Query: 349 INRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEE 386
++ E + F D + E E
Sbjct: 364 ELDRQSEEEPEENFELPETEDVETEDAISIEDIEADNE 401
>gi|163815206|ref|ZP_02206583.1| hypothetical protein COPEUT_01364 [Coprococcus eutactus ATCC 27759]
gi|158449401|gb|EDP26396.1| hypothetical protein COPEUT_01364 [Coprococcus eutactus ATCC 27759]
Length = 398
Score = 338 bits (866), Expect = 2e-90, Method: Composition-based stats.
Identities = 142/389 (36%), Positives = 229/389 (58%), Gaps = 1/389 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+++ + + E++I +DV+L + S++ A + + T +I V ++ ETG+ ++ E
Sbjct: 3 EIIEALNQLEKERNISKDVLLEAIERSLKTACKKDFNTDENITVSLDRETGECHVYAAKE 62
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EVEN + QISL A+ + +IG V+ + +FGR+A Q A+ VI+Q + E ER
Sbjct: 63 VVDEVENPSFQISLSQAKMLNRRYEIGDTVNVEITTKNFGRIAAQRARNVIVQAINENER 122
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186
Y F K ++++G V+R +V V L ++ +++ E I E GDR+K Y+
Sbjct: 123 AAIYDHFHMKEKDVVTGIVERQVGDSVNVSLDDKTEALLKPSEMIEGETYERGDRIKLYV 182
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
+V++ +GP++++SRTHP+ + +LF EV EI +G+V++K+ R+ GSR+K+AV+S+D
Sbjct: 183 TEVKKTNKGPKIVVSRTHPELVKRLFEKEVTEIADGVVEIKSFCREAGSRSKIAVWSNDE 242
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
++D VGACVG+ G RV AVV +L EKIDI+ WS + A F+ NAL P+ V V +D D
Sbjct: 243 NVDAVGACVGVNGDRVNAVVADLNGEKIDIIPWSENPAEFIYNALSPSDVEDVSVDLDEK 302
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
V+VP QLSLAIG++GQN RLA++LTG+ IDI + + D + +
Sbjct: 303 SAFVVVPDTQLSLAIGKKGQNARLAAKLTGYKIDIKSHSKAEEMGYFDDQAPDGGYDKDF 362
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEI 395
+ + A V I E
Sbjct: 363 DPYGSDDDYYDEVDDDKDAKSASVDIDET 391
>gi|326204063|ref|ZP_08193924.1| NusA antitermination factor [Clostridium papyrosolvens DSM 2782]
gi|325985830|gb|EGD46665.1| NusA antitermination factor [Clostridium papyrosolvens DSM 2782]
Length = 382
Score = 338 bits (866), Expect = 2e-90, Method: Composition-based stats.
Identities = 152/368 (41%), Positives = 242/368 (65%)
Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66
EL+ + + EK I +++++ + ++ A + +G+ +++V I+ TGD+ ++ L
Sbjct: 3 AELILALEQLEKEKGIKKEIIIEAIEAALISAYKKNFGSAMNVKVNIDRVTGDVKVYALR 62
Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
+V E+ + IS+ A +P+++IG V + P FGR+A Q+AKQV++QK+REAE
Sbjct: 63 KVAEDPDMEAMDISVGEAAILNPTLEIGDYVESEVTPRSFGRIAAQTAKQVVVQKLREAE 122
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
R Y EF +K +I++G ++R+E NVIVDLG ++ V+ E E R +R+KSYI
Sbjct: 123 RGIIYDEFYNKESDIVTGIIQRIEKRNVIVDLGKTEAVLGPTEQTPGEEYRFNERLKSYI 182
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
+V++ +GPQ+++SRTHP + +LF +EVPEI++G V++K++SR+PGSR K+AV+S D
Sbjct: 183 VEVKKTTKGPQIMISRTHPGLVKRLFELEVPEIHDGTVEIKSISREPGSRTKIAVYSKDE 242
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
++DPVGACVG +G+RVQA+V ELR EKIDI+ WS D ++ ++L PA V +V +DED
Sbjct: 243 NVDPVGACVGQKGTRVQAIVDELRGEKIDIIKWSNDPRDYISSSLSPAKVVRVDVDEDEK 302
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + + +K + +
Sbjct: 303 SAKVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQLRQSIEKQLFDDSIGSGFLD 362
Query: 367 NVDEIIAH 374
D +
Sbjct: 363 ETDPDDIN 370
>gi|222526490|ref|YP_002570961.1| NusA antitermination factor [Chloroflexus sp. Y-400-fl]
gi|222450369|gb|ACM54635.1| NusA antitermination factor [Chloroflexus sp. Y-400-fl]
Length = 442
Score = 338 bits (866), Expect = 2e-90, Method: Composition-based stats.
Identities = 144/341 (42%), Positives = 222/341 (65%), Gaps = 5/341 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM---SDIRVEINPETGDISL 62
+ + +A E+ I ++ ++ VM ++ A R L G D+ V+++P +G +
Sbjct: 2 KSDFYAAITQIASERGIPKEAIIDVMERALVSAYRRLLGPNPPAIDVVVKLDPVSGVARV 61
Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+ +VV+EV + +I L+ AR P IG V P DFGR+A Q+AKQV++Q +
Sbjct: 62 YAEKQVVDEVYDERFEIDLEAARRIKPDAQIGEAVLVESTPRDFGRIAAQTAKQVVLQGI 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVE--YGNVIVDLGNSDGVIRRDETISRENLRPGD 180
++ ER+ Y EF+D+ GE+++ TV+R GNVI++LG ++ +I E ++ + G
Sbjct: 122 KDIERNYIYSEFEDREGELLTATVQRNNGPRGNVILELGKAEAIIPPKEQVANDRYYHGQ 181
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
R+K Y+ +V++++RGP+++ SR H +++LF MEVPEIYNG V++K+++R+PG R K+A
Sbjct: 182 RLKVYLMEVKKDERGPRLIASRAHKNLILRLFEMEVPEIYNGAVEIKSIAREPGLRTKVA 241
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V + IDPVG+CVGMRG R+Q +V EL EKID+V WS D ++ NAL PA V +V
Sbjct: 242 VAARQEGIDPVGSCVGMRGIRIQNIVNELNGEKIDVVQWSSDPREYIANALSPAQVVEVH 301
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
L++ VIVP +QLSLAIG+ GQNVRLA++LTGW IDI
Sbjct: 302 LNDHEHTALVIVPDKQLSLAIGKEGQNVRLAAKLTGWRIDI 342
>gi|242373557|ref|ZP_04819131.1| transcription elongation factor NusA [Staphylococcus epidermidis
M23864:W1]
gi|242348920|gb|EES40522.1| transcription elongation factor NusA [Staphylococcus epidermidis
M23864:W1]
Length = 403
Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats.
Identities = 149/368 (40%), Positives = 229/368 (62%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E
Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGSFRVIARKE 64
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + ++ L A ++P+ ++G + + + P DFGRV Q+AKQ ++Q++R+AER
Sbjct: 65 VVEEVFDDREEVDLSTALVKNPAYEVGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y EF DK +I++G + RV++ V V+LG + V+ E E+ P +R+K Y+
Sbjct: 125 EILYDEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNESYIPNERIKVYVN 184
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S +
Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSENPD 244
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DED
Sbjct: 245 IDAVGACVGSKGARVEAVVEELGGEKIDIVQWNEDPKVFVRNALSPSQVLEVIVDEDNQS 304
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + E + + +N
Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPIIESEEVADEIVN 364
Query: 368 VDEIIAHL 375
+
Sbjct: 365 TGDEDVEF 372
>gi|303326256|ref|ZP_07356699.1| transcription termination factor NusA [Desulfovibrio sp. 3_1_syn3]
gi|302864172|gb|EFL87103.1| transcription termination factor NusA [Desulfovibrio sp. 3_1_syn3]
Length = 464
Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats.
Identities = 176/429 (41%), Positives = 273/429 (63%), Gaps = 7/429 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
LEL + D ++ +K +DRD+++ + D+++ + + D+ V N +TGDI +++
Sbjct: 2 NLELKKAIDQISKDKGLDRDMLIDTLEDAVRTSVLRRFSEDMDVEVTYNDDTGDIEVYQF 61
Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
VVE+ V N QI+L AR+ DPS+ + + + D GR+A QSAKQVIIQ++R
Sbjct: 62 KIVVEDDDVANEDTQIALADAREHDPSVQLDDEMGFRVKVEDLGRIAAQSAKQVIIQRMR 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183
+AE++ Y E+KD+VGEI+SG ++R + G +V+LG ++ ++ R+E I RE+ + GDRV+
Sbjct: 122 DAEQEIIYEEYKDRVGEIVSGIIQRRDKGGWVVNLGRTEAILPREEQIPREHYKRGDRVQ 181
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+ I +VR+E RGPQV++SR H +M LF EVPE+ +G+VQ+ V+RDPGSRAK+AV S
Sbjct: 182 ALIIEVRKEGRGPQVVISRAHRDYMAALFRREVPEVDDGVVQIMGVARDPGSRAKVAVLS 241
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
+ +DPVGACVG+RGSR+Q +V ELR E+IDIVVWSP+ AT+ NAL PA+V+++V+DE
Sbjct: 242 RERDVDPVGACVGVRGSRIQNIVQELRGERIDIVVWSPEIATYARNALAPALVSRIVVDE 301
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
+ +EVIVP +QL+ AIGR+GQNV+LA++L GW +DI TE +
Sbjct: 302 EENLLEVIVPDDQLTNAIGRKGQNVKLAARLLGWKVDIFTETRYNEANAIGH-----GLE 356
Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423
Q +V E+ L+ G++ ++ L E+A +++ ++ T
Sbjct: 357 QVASVAEVSIEALLEAGYSSLDALREASDEELADKLTISASRISDLRSAINFLAPVVEST 416
Query: 424 LQKKIRELG 432
+ ELG
Sbjct: 417 PESSAVELG 425
>gi|260101365|ref|ZP_05751602.1| N utilization substance protein A [Lactobacillus helveticus DSM
20075]
gi|260084817|gb|EEW68937.1| N utilization substance protein A [Lactobacillus helveticus DSM
20075]
Length = 364
Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats.
Identities = 130/343 (37%), Positives = 209/343 (60%), Gaps = 2/343 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + K I +DV++ + ++ A + Y ++ V+ + G+ + +
Sbjct: 14 EMLEAFATLEKTKGIKQDVIVDAIKAALVAAYKKNYNQAQNVEVDFDERRGNFKVMAVKT 73
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV++ ++SLK A + ++G + + P +FGR+A Q+AKQVI+Q++REAER
Sbjct: 74 VVDEVQDDRLEVSLKDALAINRGYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREAER 133
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
E+ E+++G V+R + V V +GN + ++ + + + E P D+++ +
Sbjct: 134 SHIIDEYSQYEDELVTGPVERRDNRFVYVKIGNVEAIMPQCDQMPNEVYNPQDQIRVLVT 193
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +G Q+++SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D +
Sbjct: 194 HVGSDSKGAQIVVSRTAPDVVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSNDPN 253
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305
IDPVG CVG +G+RVQ VV EL E ID+V + D + F+ NAL PA V V DE+
Sbjct: 254 IDPVGTCVGQKGARVQNVVNELGGENIDVVKYEEDPSDFIANALNPAEVIAVQFGDDEEE 313
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E
Sbjct: 314 KSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVE 356
>gi|315038575|ref|YP_004032143.1| transcription elongation factor NusA [Lactobacillus amylovorus GRL
1112]
gi|312276708|gb|ADQ59348.1| transcription elongation factor NusA [Lactobacillus amylovorus GRL
1112]
Length = 395
Score = 337 bits (865), Expect = 3e-90, Method: Composition-based stats.
Identities = 136/370 (36%), Positives = 215/370 (58%), Gaps = 2/370 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + K I +DV++ + ++ A + Y ++ V+ + GD + +
Sbjct: 4 EMLEAFATLEKTKGIKQDVIVDAIKAALVAAYKKNYNQAQNVEVDFDERKGDFKVMAVKT 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REAER
Sbjct: 64 VVDEVQDDRLEVSLKDALAINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ E+ E+++GTV+R + V V +GN + V+ + + E P D+++ +
Sbjct: 124 NHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAVMPHHDQMPNEVYNPQDQIRVLVT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +G Q+ +SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D +
Sbjct: 184 HVGSDSKGAQITVSRTAPDMVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSNDPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305
IDPVG CVG +G+RVQ VV EL E IDIV + D + F+ NAL PA V V DED
Sbjct: 244 IDPVGTCVGQKGARVQNVVNELGGENIDIVKYEEDPSDFIANALNPAEVIAVQFGDDEDE 303
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E +K + ++
Sbjct: 304 KSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDEKSSDSDSEDAADE 363
Query: 366 INVDEIIAHL 375
Sbjct: 364 SQEPATNEET 373
>gi|154485019|ref|ZP_02027467.1| hypothetical protein EUBVEN_02737 [Eubacterium ventriosum ATCC
27560]
gi|149733972|gb|EDM50091.1| hypothetical protein EUBVEN_02737 [Eubacterium ventriosum ATCC
27560]
Length = 408
Score = 337 bits (865), Expect = 3e-90, Method: Composition-based stats.
Identities = 143/349 (40%), Positives = 223/349 (63%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
EL++ + + EK I ++ + + +++ A ++ + ++ V ++ ETGD ++
Sbjct: 2 NKELIEALNILEKEKDISKESLFEAIENNLVVAYKNNFNKADNVTVTMDRETGDFHIYSQ 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
EVVEEV + +ISL+ AR + ++G +V+ + DFGR+A QSAK I+QK+RE
Sbjct: 62 KEVVEEVMDPVTEISLEDARSIKGTYELGDIVNIEIQSKDFGRIATQSAKNGILQKIREE 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y ++ +K +I++G V+R+ N+ V+LG D V+ E E+ RP +R+K Y
Sbjct: 122 ERKSLYEQYFEKQDDIVTGIVQRINGKNISVNLGKVDTVLMEKEQAKGEHFRPTERIKLY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I +V+ RGP++++SRTHP + +LF EV EI +G V++K+++R+ GSR K+AV+S++
Sbjct: 182 ITEVKDNGRGPRIVVSRTHPGLVKRLFEQEVTEIQDGTVEIKSIAREAGSRTKMAVWSNN 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+D VGACVG+ G+RV AVV ELRDEKIDIV WS + A + NAL P+ V V+ D D
Sbjct: 242 EDVDAVGACVGVNGARVNAVVDELRDEKIDIVNWSENPAILIENALSPSKVVAVLADPDN 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354
V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + +
Sbjct: 302 KEALVVVPDFQLSLAIGKEGQNARLAAKLTGFKIDIKSESQAKEEGIQY 350
>gi|254445533|ref|ZP_05059009.1| transcription termination factor NusA [Verrucomicrobiae bacterium
DG1235]
gi|198259841|gb|EDY84149.1| transcription termination factor NusA [Verrucomicrobiae bacterium
DG1235]
Length = 419
Score = 337 bits (864), Expect = 3e-90, Method: Composition-based stats.
Identities = 155/415 (37%), Positives = 259/415 (62%), Gaps = 1/415 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + + + EK I R+ ++S + +I+ AA ++++ I+P G ++ + LL+
Sbjct: 4 EILSVLEYMEKEKGIGREDMISAIVTAIKNAAAKGVNAGQELKITIDPRHGKMNAWALLD 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+ V + +ISL+ AR D ++IG V + P GR+A Q+A+Q I+Q++R+ E+
Sbjct: 64 VVDSVSDPKTEISLEKARQIDDELNIGDVFEKEIDPAYLGRIAAQTARQAIMQRLRQFEK 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+R Y +FKD+VG+I+SG V+R E G++IVDLG ++ ++ + + E+ PG+R++ +
Sbjct: 124 ERIYDDFKDQVGDIVSGIVRRRERGDLIVDLGKAEAMMPSRDQVPGEDYSPGERIRCLLL 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
+ RGP+++L+R++P+F+++LF +EV EI +G V+++A SR+PG R K+AV SSD
Sbjct: 184 KIEATNRGPELILTRSNPKFVLRLFDLEVTEIADGTVKIEAFSREPGYRTKIAVTSSDPK 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVGACVG RG+RV+++V EL EKIDI+ + D + AL+PAI V++DE R
Sbjct: 244 VDPVGACVGARGARVKSIVRELGGEKIDIIRYFEDPKEMALEALKPAIPRNVIMDERSRR 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
I + V ++ L++AIGR+GQN RL S+L GW IDI+ EE ++ + E Q Q
Sbjct: 304 ISIEVSEDDLAIAIGRKGQNARLTSKLVGWKIDIMKEEVKVVSMETKQAEAAQGLNQIEG 363
Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
+D A LV G E V+ ++ + GF E A +I + +++ +I
Sbjct: 364 IDSATAERLVNNGLISPELFLDVEEDDLVEM-GFSAEEAADIIAKVTTFIQSQNI 417
>gi|327183772|gb|AEA32219.1| transcription elongation factor NusA [Lactobacillus amylovorus GRL
1118]
Length = 395
Score = 337 bits (864), Expect = 3e-90, Method: Composition-based stats.
Identities = 135/370 (36%), Positives = 214/370 (57%), Gaps = 2/370 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + K I +DV++ + ++ A + Y ++ V+ + GD + +
Sbjct: 4 EMLEAFATLEKTKGIKQDVIVDAIKAALVAAYKKNYNQAQNVEVDFDERKGDFKVMAVKT 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REAER
Sbjct: 64 VVDEVQDDRLEVSLKDALAINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ E+ E+++GTV+R + V V +GN + V+ + + E P D+++ +
Sbjct: 124 NHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAVMPHHDQMPNEVYNPQDQIRVLVT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +G Q+ +SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D +
Sbjct: 184 HVGSDSKGAQITVSRTAPDMVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSNDPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305
IDPVG CVG +G+RVQ VV EL E IDIV + D + F+ NAL PA V V DED
Sbjct: 244 IDPVGTCVGQKGARVQNVVNELGGENIDIVKYEEDPSDFIANALNPAEVIAVQFGDDEDE 303
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E + + ++
Sbjct: 304 KSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDENSSDSDSEDAADE 363
Query: 366 INVDEIIAHL 375
Sbjct: 364 SQESATNEET 373
>gi|156741122|ref|YP_001431251.1| NusA antitermination factor [Roseiflexus castenholzii DSM 13941]
gi|156232450|gb|ABU57233.1| NusA antitermination factor [Roseiflexus castenholzii DSM 13941]
Length = 442
Score = 336 bits (863), Expect = 4e-90, Method: Composition-based stats.
Identities = 145/339 (42%), Positives = 220/339 (64%), Gaps = 3/339 (0%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS---DIRVEINPETGDISL 62
+ + +A E+ I ++ ++ VM ++ A R G +I V ++P TG +
Sbjct: 2 KSDFYAAISQIASERGIPKEAIVEVMEKALATAYRRTLGPNPPPMEISVRLDPLTGAARV 61
Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+ +VV++V + +I L+ AR P +++G V P DFGR+A Q+AKQVI+Q +
Sbjct: 62 YSEKQVVDDVYDERFEIDLESARKIKPDVELGESVVVETTPKDFGRIAAQTAKQVILQGI 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182
+E ER+ Y E+ D+ GE+++ TV+R+ GNVI+++G ++ V+ E + + G R+
Sbjct: 122 KEVEREHIYGEYMDREGELVTATVQRMAKGNVILEMGKAEAVLPPKEQVETDRYYHGQRL 181
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
K Y+ ++RRE+RGP+++ SR H + +LF MEVPEIYNG V++K+++R+PG R K+AV
Sbjct: 182 KVYLMEIRREERGPKLIASRAHKNLITRLFEMEVPEIYNGAVEIKSIAREPGIRTKVAVA 241
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
+ IDPVG+CVGMRG R+Q +V EL EKID+V WS + F+ NAL PA V +V L
Sbjct: 242 ARQEGIDPVGSCVGMRGIRIQNIVNELNGEKIDVVQWSSNPKEFIANALSPAQVVEVQLR 301
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
+D VIVP +QLSLAIG+ GQNVRLA++LTGW IDI
Sbjct: 302 DDEHAATVIVPDKQLSLAIGKEGQNVRLAAKLTGWRIDI 340
>gi|163848555|ref|YP_001636599.1| transcription termination factor NusA [Chloroflexus aurantiacus
J-10-fl]
gi|163669844|gb|ABY36210.1| transcription termination factor NusA [Chloroflexus aurantiacus
J-10-fl]
Length = 442
Score = 336 bits (863), Expect = 4e-90, Method: Composition-based stats.
Identities = 144/341 (42%), Positives = 221/341 (64%), Gaps = 5/341 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM---SDIRVEINPETGDISL 62
+ + +A E+ I ++ ++ VM ++ A R L G D+ V+++P +G +
Sbjct: 2 KSDFYAAITQIASERGIPKEAIIDVMERALVSAYRRLLGPNPPAIDVVVKLDPVSGVARV 61
Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+ +VV+EV + +I L+ AR P IG V P DFGR+A Q+AKQV++Q +
Sbjct: 62 YAEKQVVDEVYDERFEIDLEAARRIKPDAQIGEAVLVESTPRDFGRIAAQTAKQVVLQGI 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVE--YGNVIVDLGNSDGVIRRDETISRENLRPGD 180
++ ER+ Y EF+D+ GE+++ TV+R GNVI++LG ++ +I E ++ + G
Sbjct: 122 KDIERNYIYSEFEDREGELLTATVQRNNGPRGNVILELGKAEAIIPPKEQVANDRYYHGQ 181
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
R+K Y+ +V++++RGP+++ SR H +++LF MEVPEIYNG V++K+++R+PG R K+A
Sbjct: 182 RLKVYLMEVKKDERGPRLIASRAHKNLILRLFEMEVPEIYNGAVEIKSIAREPGLRTKVA 241
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V + IDPVG+CVGMRG R+Q +V EL EKID+V WS D ++ NAL PA V +V
Sbjct: 242 VAARQEGIDPVGSCVGMRGIRIQNIVNELNGEKIDVVQWSSDPREYIANALSPAQVVEVH 301
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
L++ VIVP +QLSLAIG+ GQNVRLA +LTGW IDI
Sbjct: 302 LNDHEHTALVIVPDKQLSLAIGKEGQNVRLAEKLTGWRIDI 342
>gi|300087631|ref|YP_003758153.1| transcription termination factor NusA [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299527364|gb|ADJ25832.1| transcription termination factor NusA [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 500
Score = 336 bits (863), Expect = 4e-90, Method: Composition-based stats.
Identities = 162/456 (35%), Positives = 259/456 (56%), Gaps = 9/456 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL-YGTMSDIRVEINPETGDISLFR 64
+ + L ++ EK++ ++VVL+ + ++ A R + +I+ E++ TG I ++
Sbjct: 2 KSDFLLAITQLSAEKNLSKEVVLAAVEAALVSAYRKESFTPNQNIQAELDTMTGKIKVWA 61
Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
+VVE+V + +++L AR +PSI +G V P D GR+A Q+AKQVI+Q++ E
Sbjct: 62 EKKVVEKVTDRRIEVTLDEARKVNPSIQLGEPVLIEDTPHDAGRIAAQTAKQVILQRLHE 121
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AE E+ K G+I+SG ++RVE VI+DLG ++ V+ E + E RPG R+K
Sbjct: 122 AENTAIVDEYAGKAGDIVSGVIQRVEPKQVIIDLGRAEAVMPPSEQVYTERYRPGQRLKV 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
++ +V +G V++SR+HP + +LF ME+PEIY+G+V++KAV+R+ G+R+K+AV +
Sbjct: 182 FLVEVATTIKGATVIVSRSHPGLLRRLFEMEIPEIYSGMVEIKAVAREGGARSKVAVSAR 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
S IDPVG CVG+RG R+Q +V+EL EKID++ WS D A + NAL PA V +V+++E
Sbjct: 242 QSGIDPVGCCVGLRGIRIQNIVSELNGEKIDVIPWSEDPALLITNALSPAQVVRVIINEA 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN----RQKDFNERTQ 360
+ ++P Q SLAIG+ GQNVRLA +LTGW IDI + + E +
Sbjct: 302 LKSATAVIPDRQQSLAIGKEGQNVRLAVKLTGWRIDIKSVSDYEAELPAVAPAPAVETEK 361
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
+ V + V + D E A VK A E E +E+ A E
Sbjct: 362 PEDKTAQVAKEKPAKPVEKQAEDAREKATVKAE--AKPEEKPVEVLLELPPEALEPALAT 419
Query: 421 DITLQKKIRELG--VSEELCSIPGIDSKIKVALGEN 454
+ + ++ E G +S ++ P I ++ V E+
Sbjct: 420 APSAEPEVEEGGTKLSLDMAERPDIKNESGVRFAED 455
>gi|227513181|ref|ZP_03943230.1| transcription elongation factor NusA [Lactobacillus buchneri ATCC
11577]
gi|227083562|gb|EEI18874.1| transcription elongation factor NusA [Lactobacillus buchneri ATCC
11577]
Length = 440
Score = 336 bits (863), Expect = 4e-90, Method: Composition-based stats.
Identities = 149/430 (34%), Positives = 233/430 (54%), Gaps = 1/430 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL A+ EK I ++VV+ M ++ A + YG ++ V + G++ ++ +
Sbjct: 4 ELLGALSALEEEKGIKKEVVIEAMQAALVSAYKRNYGQAQNVEVSFDGTKGEMHVYSVKT 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVE V + Q+SL A + +IG + + P +FGR+A Q+AKQVI+Q+VREAER
Sbjct: 64 VVETVTDDQMQVSLDDALQINKGYEIGDDIKFEVTPKNFGRIAAQTAKQVIMQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ + E+ ++++GTV+R + V ++L + V+ + + E RP +R+K Y+
Sbjct: 124 ENIFDEYSKYEDDLVTGTVERQDTRFVYINLDKVEAVMGPRDQMPNEVYRPQERIKVYVT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +GPQV +SRT P + +LF EVPEIY+G V++ +++R+ G RAK+AV S++S
Sbjct: 184 RVENATKGPQVFVSRTDPGMLKRLFEQEVPEIYDGTVEIVSIAREAGDRAKVAVRSNNSD 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVG 306
IDPVG VG +G RVQ +V EL E +DIV W D A ++ NAL PA V V+ D++
Sbjct: 244 IDPVGTAVGPKGQRVQTIVNELHGENMDIVEWDEDDARYIANALNPAEVIDVIFEDDNDR 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
VIVP QLSLAIG+RGQN RLA++LTG+ IDI +E E + + Q +
Sbjct: 304 ACTVIVPDYQLSLAIGKRGQNARLAAKLTGFKIDIKSETEAKEFLAERKQKAQQAENEDE 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426
E + + + + S E + + + + + ID
Sbjct: 364 GTTEESETAEPDQETSGEAVDTDSQEVQTESDEDVEADAQDDQSDNVEKPSDHIDDADSS 423
Query: 427 KIRELGVSEE 436
E S+E
Sbjct: 424 DHTEDTSSDE 433
>gi|217967593|ref|YP_002353099.1| NusA antitermination factor [Dictyoglomus turgidum DSM 6724]
gi|217336692|gb|ACK42485.1| NusA antitermination factor [Dictyoglomus turgidum DSM 6724]
Length = 360
Score = 336 bits (862), Expect = 5e-90, Method: Composition-based stats.
Identities = 145/337 (43%), Positives = 220/337 (65%)
Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71
+ + + EK +D++VVL + ++ A + YGT RVEIN +I+++ + ++VE+
Sbjct: 10 VLEQIITEKKLDKNVVLEALRKALLSAFKKAYGTSKGARVEINFNKQEINIYVVKKIVEK 69
Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131
V + +ISL+ A+ P IG + + P +FGR+AVQ AKQVI+Q ++EAER Y
Sbjct: 70 VNDNISEISLEEAKSLKPDAKIGDEIEIEIEPQEFGRIAVQVAKQVIMQSLKEAERKILY 129
Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRR 191
++K K GE+++GTV RVE GNV V + + ++ E I E G R+++Y+ +VR+
Sbjct: 130 EKYKAKEGELVNGTVVRVEKGNVYVRFPDIEAILPVKEQIPGEEYWIGRRLRAYLLEVRK 189
Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPV 251
+ P V+LSR+HP F+ +LF +EVPEI G V++ +++R+PG R+K+AV+S +DP+
Sbjct: 190 TTKDPLVILSRSHPGFLKRLFELEVPEIREGTVEIVSIAREPGMRSKVAVYSHLPEVDPI 249
Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVI 311
GACVG +G R+Q ++ EL EKIDIV+WS D A FV +L PA V + ED + VI
Sbjct: 250 GACVGYKGVRIQNIINELNGEKIDIVLWSKDPAEFVARSLSPAKPLSVEIREDEHKAIVI 309
Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
VP +Q SLAIG+ GQNVRLA +LT W ID+ T E+ +
Sbjct: 310 VPPDQFSLAIGKDGQNVRLAVKLTSWRIDVRTPEQYA 346
>gi|73662811|ref|YP_301592.1| transcription elongation factor NusA [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
gi|72495326|dbj|BAE18647.1| transcription termination-antitermination factor [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
Length = 397
Score = 336 bits (862), Expect = 5e-90, Method: Composition-based stats.
Identities = 157/399 (39%), Positives = 238/399 (59%), Gaps = 7/399 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + + EK I R+V++ + ++ A + Y + +RVE+N + G + E
Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARTVRVELNMDQGSFKVIARKE 64
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEE + +ISL A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER
Sbjct: 65 VVEESMDDREEISLDTALVKNPAYEIGDIYEEDVTPSDFGRVGAQAAKQAVMQRLRDAER 124
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y EF DK +I++G + RV++ V V+LG ++ V+ E E+ P +R++ Y+
Sbjct: 125 EILYDEFIDKEDDIVTGLIDRVDHRYVYVNLGRTEAVLSEAERSPNESYIPNERIRVYVN 184
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SR+HP + +LF EVPEI++G V VK+V+R+ G R+K++V S +
Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIFDGTVIVKSVAREAGDRSKISVHSDNPD 244
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DE
Sbjct: 245 IDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLQVIVDEPNQS 304
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + E
Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDARAAGVYPAEEALN------E 358
Query: 368 VDEIIAHLLV-AEGFADVEELACVKISEIASIEGFDEET 405
DE+ +V +E E+ + +E IE D E
Sbjct: 359 EDEMQLDDVVSSENIEVEEDTTESQPTETVEIEDEDAEK 397
>gi|227524396|ref|ZP_03954445.1| transcription elongation factor NusA [Lactobacillus hilgardii ATCC
8290]
gi|227088627|gb|EEI23939.1| transcription elongation factor NusA [Lactobacillus hilgardii ATCC
8290]
Length = 440
Score = 336 bits (862), Expect = 5e-90, Method: Composition-based stats.
Identities = 149/430 (34%), Positives = 233/430 (54%), Gaps = 1/430 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL A+ EK I ++VV+ M ++ A + YG ++ V + G++ ++ +
Sbjct: 4 ELLGALSALEEEKGIKKEVVIEAMQAALVSAYKRNYGQAQNVEVSFDGTKGEMHVYSVKT 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVE V + Q+SL A + +IG + + P +FGR+A Q+AKQVI+Q+VREAER
Sbjct: 64 VVETVTDDQMQVSLDDALQINKGYEIGDDIKFEVTPKNFGRIAAQTAKQVIMQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ + E+ ++++GTV+R + V ++L + V+ + + E RP +R+K Y+
Sbjct: 124 ENIFDEYSKYEDDLVTGTVERQDTRFVYINLDKVEAVMGPRDQMPNEVYRPQERIKVYVT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +GPQV +SRT P + +LF EVPEIY+G V++ +++R+ G RAK+AV S++S
Sbjct: 184 RVENATKGPQVFVSRTDPGMLKRLFEQEVPEIYDGTVEIVSIAREAGDRAKVAVRSNNSD 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVG 306
IDPVG VG +G RVQ +V EL E +DIV W D A ++ NAL PA V V+ D++
Sbjct: 244 IDPVGTAVGPKGQRVQTIVNELHGENMDIVEWDEDDARYIANALNPAEVIDVIFEDDNDR 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
VIVP QLSLAIG+RGQN RLA++LTG+ IDI +E E + + Q +
Sbjct: 304 ACTVIVPDYQLSLAIGKRGQNARLAAKLTGFKIDIKSETEAKEFLAERKQKAQQAENEDE 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426
E + + + + S E + + + + + ID
Sbjct: 364 GTTEESETAEPDQETSGEVVDTDSQEVQTESDEDVEADAQDDQSDNVEKPSDHIDDADSS 423
Query: 427 KIRELGVSEE 436
E S+E
Sbjct: 424 DHTEDTSSDE 433
>gi|189424726|ref|YP_001951903.1| transcription elongation factor NusA [Geobacter lovleyi SZ]
gi|189420985|gb|ACD95383.1| NusA antitermination factor [Geobacter lovleyi SZ]
Length = 385
Score = 336 bits (862), Expect = 5e-90, Method: Composition-based stats.
Identities = 176/367 (47%), Positives = 242/367 (65%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
L Q + + EK IDR VV+ M ++ AA Y ++ N +TG++ LF + V
Sbjct: 7 LKQAIEQIVKEKGIDRQVVIEAMEQAVLSAANKKYRNTRNLEAHYNNDTGEVELFEYVVV 66
Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
VEEV++ +ISL AR+ DP ++G + + + DFGR+A Q+AKQVIIQKVREAER+
Sbjct: 67 VEEVQDSYTEISLDEAREMDPECEVGDELGEKIDSGDFGRIAAQTAKQVIIQKVREAERE 126
Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
+ E+KD+ EI++G V+R E G++++DLG ++ ++ E + RE RPGDR+++ I D
Sbjct: 127 TVFNEYKDRQWEIVTGQVRRFERGDLLIDLGRAEAILSGKEQMPREVYRPGDRIRAIITD 186
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
+ +GPQ++LSRTHPQ + KLF EVPEI G+V++ V RDPGSRAK+AV S D I
Sbjct: 187 IAMTTKGPQIILSRTHPQMLAKLFEAEVPEIGEGLVEIVNVVRDPGSRAKIAVASHDRDI 246
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308
DPVGACVGMRGSRVQ VV+ELR EKIDI+ WS D A FV NAL PA V KV +DE+ +
Sbjct: 247 DPVGACVGMRGSRVQNVVSELRGEKIDIIPWSADIARFVCNALSPAQVVKVFMDEEQRTL 306
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368
EVIVP +QLSLAIG+RGQNV LA++LTG IDI E + ++F ++
Sbjct: 307 EVIVPDDQLSLAIGKRGQNVSLAARLTGCRIDIKGEGKVEEGDLEEFASFDGTHVEEEPE 366
Query: 369 DEIIAHL 375
+ +
Sbjct: 367 EMAVDEE 373
>gi|325957049|ref|YP_004292461.1| transcription elongation factor NusA [Lactobacillus acidophilus
30SC]
gi|325333614|gb|ADZ07522.1| transcription elongation factor NusA [Lactobacillus acidophilus
30SC]
Length = 395
Score = 336 bits (862), Expect = 5e-90, Method: Composition-based stats.
Identities = 135/370 (36%), Positives = 214/370 (57%), Gaps = 2/370 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + K I +DV++ + ++ A + Y ++ V+ + GD + +
Sbjct: 4 EMLEAFATLEKTKGIKQDVIVDAIKAALVAAYKKNYKQAQNVEVDFDERKGDFKVMAVKT 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REAER
Sbjct: 64 VVDEVQDDRLEVSLKDALAINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ E+ E+++GTV+R + V V +GN + V+ + + E P D+++ +
Sbjct: 124 NHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAVMPHHDQMPNEVYNPQDQIRVLVT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +G Q+ +SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D +
Sbjct: 184 HVGSDSKGAQITVSRTAPDMVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSNDPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305
IDPVG CVG +G+RVQ VV EL E IDIV + D + F+ NAL PA V V DED
Sbjct: 244 IDPVGTCVGQKGARVQNVVNELGGENIDIVKYEEDPSDFIANALNPAEVIAVQFGDDEDE 303
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E + + ++
Sbjct: 304 KSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDENSSDSDSEDAADE 363
Query: 366 INVDEIIAHL 375
Sbjct: 364 SQESATNEET 373
>gi|227904178|ref|ZP_04021983.1| transcription elongation factor NusA [Lactobacillus acidophilus
ATCC 4796]
gi|227868197|gb|EEJ75618.1| transcription elongation factor NusA [Lactobacillus acidophilus
ATCC 4796]
Length = 400
Score = 336 bits (862), Expect = 6e-90, Method: Composition-based stats.
Identities = 140/394 (35%), Positives = 227/394 (57%), Gaps = 13/394 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + K I++DV++ + ++ A + Y ++ V+ + G+ + +
Sbjct: 14 EMLEAFATLEKNKGIEQDVIVDAIKAALVAAYKKNYNQAQNVEVDFDERKGNFKVMAVKT 73
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REAER
Sbjct: 74 VVDEVQDDRLEVSLKDALAINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREAER 133
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ E+ E+++GTV+R + V V +GN + V+ + + E P D+++ +
Sbjct: 134 NHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAVMPHRDQMPNEVYNPQDQIRVLVT 193
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +G Q+ +SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D +
Sbjct: 194 HVGSDSKGAQITVSRTAPDMVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSNDPN 253
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT--KVVLDEDV 305
IDPVG CVG +G+RVQ VV EL E IDIV + D + ++ NAL PA V + DE+
Sbjct: 254 IDPVGTCVGQKGARVQNVVNELGGENIDIVKYEEDPSDYIANALNPAEVIAVQFGEDEEE 313
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E +K + ++
Sbjct: 314 KSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDEKSTDSVSK----- 368
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIE 399
D + +V+ E A V E A I
Sbjct: 369 --EDTDSSEDVVSTE----ESTADVTTEEKAKIT 396
>gi|167758065|ref|ZP_02430192.1| hypothetical protein CLOSCI_00403 [Clostridium scindens ATCC 35704]
gi|167663962|gb|EDS08092.1| hypothetical protein CLOSCI_00403 [Clostridium scindens ATCC 35704]
Length = 398
Score = 336 bits (861), Expect = 6e-90, Method: Composition-based stats.
Identities = 144/341 (42%), Positives = 226/341 (66%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
ELL+ + + EK I ++ +L + +S+ A ++ +G +I++ ++ T D LF
Sbjct: 2 NTELLEALNILEEEKDISKETLLDAIENSLLNACKNHFGKADNIKLIMDRTTCDYQLFAE 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVE+VE+ QISL+ A++ D ++G +V P+ FGR+A Q+AK +I+QK+RE
Sbjct: 62 KTVVEDVEDKLEQISLEDAKEIDSQYELGDIVQIPIESKSFGRIATQNAKNLILQKIREE 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y ++ +K +I++G V+R N+ ++LG +D ++ +E + E +P +R+K Y
Sbjct: 122 ERKVVYDQYFEKEKDIVTGIVQRYVGKNISINLGKADAMLTENEQVKGEVFKPTERIKLY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ +V+ +GP++L+SRTHP+ + +LF EV E+ GIV++K+++R+ GSR K+AV+S+D
Sbjct: 182 VVEVKNTTKGPKILVSRTHPELVKRLFESEVIEVKEGIVEIKSIAREAGSRTKIAVWSND 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DPVGACVGM G+RV A+V ELR EKIDI+ WS + A + NAL PA V V+ D D
Sbjct: 242 PDVDPVGACVGMNGARVNAIVNELRGEKIDIINWSDNPAILIENALSPAKVISVMADPDE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346
VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E +
Sbjct: 302 KAASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQ 342
>gi|331007796|ref|ZP_08330909.1| Transcription termination protein NusA [gamma proteobacterium
IMCC1989]
gi|330418395|gb|EGG92948.1| Transcription termination protein NusA [gamma proteobacterium
IMCC1989]
Length = 336
Score = 336 bits (861), Expect = 6e-90, Method: Composition-based stats.
Identities = 159/333 (47%), Positives = 237/333 (71%), Gaps = 3/333 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L +A+AV+ EK +D +V+ + ++ A + Y S I V I+ TGD FR E
Sbjct: 4 EILLVAEAVSNEKGVDAEVIFEALELALATATKKRYDEDSTIDVSIDRRTGDYETFRSWE 63
Query: 68 VVEEVEN--YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV++ Q + + A +++ + G + + + +DFGR+A Q+AKQVI+QKVREA
Sbjct: 64 VVDDETLALLGTQFTTEEAIEQNADLVPGDIHREQVENVDFGRIAAQTAKQVIVQKVREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184
ER++ E++DK+GE+ISG+VK+V N+IVDLGN+ +G++ R+E + RE R GDR+++
Sbjct: 124 EREQVVEEYRDKIGELISGSVKKVTRDNIIVDLGNNAEGLLPREELVGREIYRMGDRIRA 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ +VR E RGPQ+ LSR P+ +V+LF +EVPEI I+++KA +RDPGSRAK+AV ++
Sbjct: 184 MLMEVRSEMRGPQLYLSRACPEMLVELFRIEVPEIAEEIIELKAAARDPGSRAKIAVKTN 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGMRG+RVQAV EL +E+IDI++W ++A FVINA+ PA + +V+DE+
Sbjct: 244 DGRIDPVGACVGMRGARVQAVSNELANERIDIILWDDNAAQFVINAMAPAEIESIVVDEE 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337
++V V ++ L++AIGR GQNVRLAS+LTGW
Sbjct: 304 TASMDVAVAEDNLAMAIGRGGQNVRLASELTGW 336
>gi|331701346|ref|YP_004398305.1| NusA antitermination factor [Lactobacillus buchneri NRRL B-30929]
gi|329128689|gb|AEB73242.1| NusA antitermination factor [Lactobacillus buchneri NRRL B-30929]
Length = 398
Score = 336 bits (861), Expect = 6e-90, Method: Composition-based stats.
Identities = 143/391 (36%), Positives = 220/391 (56%), Gaps = 1/391 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL A+ EK I ++VV+ + ++ A + YG ++ V + + G++ ++ +
Sbjct: 4 ELLGALSALEEEKGIKKEVVIEALEAALVSAYKRNYGQAQNVEVSFDDKKGEMHVYAVKT 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV++V + Q+SL A + + ++G + + P +FGR+A Q+AKQVI+Q+VREAER
Sbjct: 64 VVDDVVDDQLQVSLDEALEINKGYELGDEIKFEVTPKNFGRIAAQTAKQVIMQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ + E+ E+++GTV+R + V V+LG + V+ + + E RP DR+K Y+
Sbjct: 124 ENVFDEYSKYEDELVTGTVERQDTRFVYVNLGKVEAVMGSKDQMPNEVYRPQDRIKVYVT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +GPQV +SRT + +LF EVPEIY+G V++ +++R+ G RAK+AV S++S
Sbjct: 184 KVENATKGPQVFVSRTATGMLKRLFEQEVPEIYDGTVEIVSIAREAGDRAKVAVRSNNSD 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED-VG 306
IDPVG VG RG RVQ +V EL E +DIV W D A+++ N+L PA V V+ D+D
Sbjct: 244 IDPVGTAVGPRGQRVQTIVNELHGENMDIVEWDEDDASYIANSLNPAEVIDVIFDDDNER 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
VIVP QLSLAIG++GQN RLA++LTG+ IDI +E E +
Sbjct: 304 ACTVIVPDYQLSLAIGKKGQNARLAAKLTGFKIDIKSETEAKEILADKAAAASDDTEADE 363
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIAS 397
D+ E E
Sbjct: 364 ASDQGDQTEDSTEDAPTDGADVNTNPDESNE 394
>gi|167772658|ref|ZP_02444711.1| hypothetical protein ANACOL_04039 [Anaerotruncus colihominis DSM
17241]
gi|167665136|gb|EDS09266.1| hypothetical protein ANACOL_04039 [Anaerotruncus colihominis DSM
17241]
Length = 358
Score = 336 bits (861), Expect = 6e-90, Method: Composition-based stats.
Identities = 145/349 (41%), Positives = 213/349 (61%), Gaps = 3/349 (0%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
++ + E + + EK I R ++ +A +I A R G D V+INP+TG
Sbjct: 7 MNTSNTEFFEALALMEKEKGIPRSLLAEKIATAIGNAIRRDMGASEDSVVDINPDTGRFY 66
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
+ VV+++ + +I + A D +G +V PL FGR+A Q+AK VI Q
Sbjct: 67 VAMRKTVVDDLLDPAQEILPEEAVKYDSGATLGDIVEIPLDTKQFGRIAAQTAKHVIRQG 126
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVE--YGNVIVDLGNSDGVIRRDETISRENLRPG 179
+REAER + + EF + +I++ TV R + GNV ++LG S+ V+ + E + E G
Sbjct: 127 IREAERGQLFAEFSSRQHDIVTATVLRTDQVRGNVTLELGKSEAVLPKGEQVPGEEYADG 186
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
R+K Y+ DV ++GP++++SRTHP + +LF MEVPEI++G ++VK++SR+ GSR K+
Sbjct: 187 ARIKVYVVDVVNGEKGPRIMISRTHPGLVKRLFEMEVPEIFDGTIEVKSISREAGSRTKI 246
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV+S+D ++DPVGAC+G +G RV A+V EL EKID+V +S D A F+ AL PA V V
Sbjct: 247 AVWSNDENVDPVGACIGPKGQRVSAIVEELGGEKIDVVRYSADPAEFIAAALSPADVVSV 306
Query: 300 VLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347
+D D V VP QLSLAIG +GQN RLA++LTGW IDI E
Sbjct: 307 EVDPDGAKSCRVSVPDHQLSLAIGNKGQNARLAAKLTGWKIDIKPESGF 355
>gi|77919153|ref|YP_356968.1| transcription elongation factor NusA [Pelobacter carbinolicus DSM
2380]
gi|77545236|gb|ABA88798.1| NusA antitermination factor [Pelobacter carbinolicus DSM 2380]
Length = 406
Score = 336 bits (861), Expect = 7e-90, Method: Composition-based stats.
Identities = 178/397 (44%), Positives = 256/397 (64%), Gaps = 2/397 (0%)
Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71
I + V EK IDR V++ + ++ AA Y D+ N G++ LF + VV+E
Sbjct: 8 IIEQVVKEKGIDRGVLVEALESAVLSAANKKYRNTRDLEAHFNDGLGEVELFEFVTVVDE 67
Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131
V + +I L+ AR+ D +++G + + +F R+A Q+AKQVIIQKVREAER++ Y
Sbjct: 68 VVDSYKEIDLEEAREIDEEVEVGDSLGMKIESGNFSRIAAQTAKQVIIQKVREAEREKIY 127
Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRR 191
EFKD+VGE+++G V+R E G++IVDLG ++G++ E + REN R GDR + I +V+
Sbjct: 128 NEFKDRVGELVNGIVRRYERGDLIVDLGLAEGLLPHREQVPRENYRQGDRARVLISEVKI 187
Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPV 251
+GPQ++LSRTHP + LF EVPEI GIV++KAV+R+ GSR K+AV S D +DPV
Sbjct: 188 STKGPQIILSRTHPGLVASLFQFEVPEIAEGIVEIKAVAREAGSRTKIAVASYDPDVDPV 247
Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVI 311
GACVGMRGSRVQ VV+ELR EKIDIV WSPD FV +L PA VT++ LD D +EVI
Sbjct: 248 GACVGMRGSRVQNVVSELRGEKIDIVPWSPDVGRFVCASLAPAEVTRIYLDNDEQALEVI 307
Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEI 371
VP +QLSLAIG++GQNVRLA++LTGW IDI +E + ++ E ++ + +++
Sbjct: 308 VPDDQLSLAIGKKGQNVRLAARLTGWNIDIKSETRAAEAAKEALGESVA--VEDASSEDV 365
Query: 372 IAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408
+ + V+ + E+ + +EE +VE
Sbjct: 366 ASEDATVQESPSVDAVLDDASDEVTEVSDSNEEGSVE 402
>gi|238852618|ref|ZP_04643028.1| transcription termination factor NusA [Lactobacillus gasseri 202-4]
gi|238834764|gb|EEQ26991.1| transcription termination factor NusA [Lactobacillus gasseri 202-4]
Length = 406
Score = 336 bits (861), Expect = 8e-90, Method: Composition-based stats.
Identities = 139/403 (34%), Positives = 228/403 (56%), Gaps = 2/403 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+++ + EK I +++++ + ++ A + Y ++ V + + G+ + +
Sbjct: 4 EMVEAFATLEKEKGIKQEIIVDAIKAALVAAYKKNYNQAQNVEVVFDEKKGNFKVNAIKT 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV++ ++SLK A + + + ++G + + P DFGR+A Q+AKQVI+Q++REAER
Sbjct: 64 VVDEVQDSRLEVSLKDALEINRAYEVGDEIRFEVTPKDFGRLAAQTAKQVIMQRLREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ E+ EI++GTV+R + V V +GN + V+ ++ + EN P D+V+ +
Sbjct: 124 EHIISEYSQYKDEIVTGTVERRDNRFVYVKIGNVEAVMPHNDQLPGENYNPQDKVRVLVT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +G Q+ +SRT P + +LF EVPE+Y+G V++ +++R+ G R K+AV S+D
Sbjct: 184 RVGSDSKGAQITVSRTAPDLVKRLFEQEVPEVYDGTVEIVSIAREAGDRTKIAVKSNDPD 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305
IDPVG VG +G+RVQ +V EL E ID+V + + + F+ NAL PA V V D+D
Sbjct: 244 IDPVGTLVGPKGTRVQNIVNELGGENIDVVKYEENPSDFIANALNPAEVIAVQFSGDDDD 303
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
VIVP QLSLAIG+RGQNVRLA++LTG+ IDI E + + + T +
Sbjct: 304 KNALVIVPDYQLSLAIGKRGQNVRLAARLTGYKIDIKPESQVEFVDSEGDDVETDQDIDD 363
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408
NV A AE + ++ S D + E
Sbjct: 364 SNVSNEEATESTAEQLEEDSSEDFPNGEDVNSALDDDADKDEE 406
>gi|319401444|gb|EFV89654.1| transcription elongation protein nusA [Staphylococcus epidermidis
FRI909]
Length = 407
Score = 335 bits (860), Expect = 9e-90, Method: Composition-based stats.
Identities = 152/400 (38%), Positives = 233/400 (58%), Gaps = 4/400 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E
Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGSFRVIARKE 64
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + ++ L A ++P+ ++G + + P DFGRV Q+AKQ ++Q++R+AER
Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEVGDIYEQDVTPKDFGRVGAQAAKQAVMQRLRDAER 124
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+
Sbjct: 125 EILYDEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S +
Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSDNPD 244
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
ID VGACVG +G+RV+AVV EL EKIDIV W D FV NAL P+ V +V++DE+
Sbjct: 245 IDAVGACVGSKGARVEAVVEELGGEKIDIVQWDEDPKVFVRNALSPSQVLEVIVDEENQS 304
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
V+VP QLSLAIG+RGQN RLA++LT W IDI +E + E + + +N
Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTSWKIDIKSESDAREAGIYPVIETEEVADEIVN 364
Query: 368 VDEIIAH----LLVAEGFADVEELACVKISEIASIEGFDE 403
+ L E A + A E ++
Sbjct: 365 SGDEDVEFDNVNLEETNLTSTELAAETDKEKTAKTEEDND 404
>gi|187251076|ref|YP_001875558.1| transcription termination factor [Elusimicrobium minutum Pei191]
gi|186971236|gb|ACC98221.1| Transcription termination factor [Elusimicrobium minutum Pei191]
Length = 463
Score = 335 bits (860), Expect = 9e-90, Method: Composition-based stats.
Identities = 166/458 (36%), Positives = 269/458 (58%), Gaps = 29/458 (6%)
Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64
N EL+ +++ EK+I RD ++ + D++ A R G + I +INPE GDI F+
Sbjct: 4 NPKELMMALESLEREKNIKRDDIIKTIEDALVSALRKNLGKTAQISAKINPEEGDIKAFQ 63
Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
+L +VE V N +ISL+ A+ D ++GG +++ L DF R+A Q AKQV+IQKVR
Sbjct: 64 VLNIVEIVANPEMEISLEQAKAMDDRSEVGGTITNVLEVEDFSRIAAQIAKQVLIQKVRG 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
ER+ Y EFK + GE+I+G+V+R +++VDLG + ++ E I RE G R+K+
Sbjct: 124 IERENTYKEFKPREGEVITGSVRRFSDRDIVVDLGKVEAILPYSEQIKRERYSNGSRIKA 183
Query: 185 YI-------------------------YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEI 219
I + + + QRGP V+LSRT P F+ LF +EVPEI
Sbjct: 184 IITKVLSQQDLLTIGEDPVLGRYKSAAFKMDKGQRGPYVILSRTSPAFLEDLFKVEVPEI 243
Query: 220 YNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVW 279
GIV++KA+ RDPG RAK+ V S D+ +DP+G CVGMRG R++A++ EL E+ID++ +
Sbjct: 244 GEGIVEIKAIQRDPGFRAKVVVRSYDNKVDPIGTCVGMRGIRIRAIMNELSGERIDLIPY 303
Query: 280 SPDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338
S D T ++N++ PA V + + + +IVP +QL++AIG+ QN++LAS+LTGW
Sbjct: 304 SEDVTTMIMNSIAPARANSVKIISAEEKKALIIVPDDQLAIAIGKDWQNIKLASKLTGWE 363
Query: 339 IDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASI 398
+++ +E + Q + + A LV GF+ VE++A ++ +A++
Sbjct: 364 LEVKSESQKLQEGQATVDNLESLLASVEGIGPKTAETLVKAGFSSVEKIAALEPEHLATV 423
Query: 399 EGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE 436
+G E++A +I A++YLE ++ ++E V+++
Sbjct: 424 QGIGEKSAAKIIEGAKKYLETQG---EEVLQEEAVNDD 458
>gi|323466337|gb|ADX70024.1| transcription elongation factor NusA [Lactobacillus helveticus H10]
Length = 410
Score = 335 bits (860), Expect = 1e-89, Method: Composition-based stats.
Identities = 136/389 (34%), Positives = 221/389 (56%), Gaps = 2/389 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + K I +DV++ + ++ A + Y ++ V+ + G+ + +
Sbjct: 21 EMLEAFATLEKTKGIKQDVIVDAIKAALVAAYKKNYNQAQNVEVDFDERRGNFKVMAVKT 80
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REAER
Sbjct: 81 VVDEVQDDRLEVSLKDALAINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREAER 140
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
E+ E+++GTV+R + V V +GN + ++ + + + E P D+++ +
Sbjct: 141 SHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAIMPQRDQMPNEVYNPQDQIRVLVT 200
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +G Q+++SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D +
Sbjct: 201 HVGSDSKGVQIVVSRTAPNVVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSNDPN 260
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305
IDPVG CVG +G+RVQ VV EL E ID+V + D + F+ NAL PA V V DE+
Sbjct: 261 IDPVGTCVGQKGARVQNVVNELGGENIDVVKYEEDPSDFIANALNPAEVIAVQFGDDEEE 320
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E +K + A
Sbjct: 321 KSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDEKSDDSAKSTETTA 380
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISE 394
+ EE + +E
Sbjct: 381 EEDSSADTDTADEDTTVQAEEKSSEDNTE 409
>gi|15895075|ref|NP_348424.1| transcription elongation factor NusA [Clostridium acetobutylicum
ATCC 824]
gi|15024772|gb|AAK79764.1|AE007689_2 Transcription terminator NusA [Clostridium acetobutylicum ATCC 824]
gi|325509213|gb|ADZ20849.1| transcription elongation factor NusA [Clostridium acetobutylicum EA
2018]
Length = 353
Score = 335 bits (859), Expect = 1e-89, Method: Composition-based stats.
Identities = 149/352 (42%), Positives = 224/352 (63%), Gaps = 4/352 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDIS 61
E +Q + EK I +++ S + D++ A + Y + ++RV +N E G+I
Sbjct: 2 NQEFIQALKEIVEEKGISEELLFSTIEDALVAAYKKNYAKLTENVHNVRVSMNRENGEIH 61
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
++ +VV+E+E+ C+ISL A+ DP + +V + P FGRVA Q+AKQV+IQ+
Sbjct: 62 VYSQKKVVQEIEDSICEISLDDAKSIDPKYQLDDIVDIEITPKSFGRVAAQAAKQVVIQR 121
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
++EAER Y EF +K +II+GTV R + GN+++DLG + ++ E I E+ +
Sbjct: 122 IKEAERSLLYDEFSEKEFDIITGTVLRKDKGNILIDLGRIEAILGPSEQIPGEDYIYNSK 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K YI +V+ +G QV++SRTHP + +LF +EVPEIYNGIV++K +SR+ GSR K+AV
Sbjct: 182 IKLYIVEVKNTTKGAQVVISRTHPGLVKRLFELEVPEIYNGIVEIKGISREAGSRTKIAV 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
+S D ++D +GACVG +G RVQ +V EL++EKIDI+ WS F+ N+L PA V V +
Sbjct: 242 YSHDENVDAMGACVGPKGMRVQNIVNELKNEKIDIIKWSKLPEEFISNSLSPAKVLDVYI 301
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353
DED IV QLSLAIG+ GQNVRLA++LT W IDI ++ + +
Sbjct: 302 DEDTKSARAIVEDNQLSLAIGKEGQNVRLAAKLTEWKIDIKSKSQYDSEVHE 353
>gi|228475002|ref|ZP_04059730.1| transcription termination factor NusA [Staphylococcus hominis
SK119]
gi|228270987|gb|EEK12375.1| transcription termination factor NusA [Staphylococcus hominis
SK119]
Length = 408
Score = 335 bits (859), Expect = 1e-89, Method: Composition-based stats.
Identities = 153/415 (36%), Positives = 237/415 (57%), Gaps = 12/415 (2%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E
Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGTFKVIARKE 64
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER
Sbjct: 65 VVEEVFDDREEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+
Sbjct: 125 EILYSEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNETYVPNERIKVYVN 184
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S +
Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSENPD 244
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
ID VGACVG +GSRV+AVV EL EKIDIV W D FV NAL P+ V +V++DED
Sbjct: 245 IDAVGACVGAKGSRVEAVVEELGGEKIDIVQWDEDPNVFVRNALSPSQVLEVIVDEDNQS 304
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + E + + +
Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPIIESEEKADEIVF 364
Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
++ + + + E E A++ + +
Sbjct: 365 SEDKDIE------------IDDINLEETNLTTTELSAEVDETSNEAQDASDNKEE 407
>gi|311110885|ref|ZP_07712282.1| transcription termination factor NusA [Lactobacillus gasseri MV-22]
gi|311066039|gb|EFQ46379.1| transcription termination factor NusA [Lactobacillus gasseri MV-22]
Length = 406
Score = 335 bits (858), Expect = 1e-89, Method: Composition-based stats.
Identities = 139/403 (34%), Positives = 228/403 (56%), Gaps = 2/403 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+++ + EK I +++++ + ++ A + Y ++ V + + G+ + +
Sbjct: 4 EMVEAFATLEKEKGIKQEIIVDAIKAALVAAYKKNYNQAQNVEVVFDEKKGNFKVNAIKT 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV++ ++SLK A + + + ++G + + P DFGR+A Q+AKQVI+Q++REAER
Sbjct: 64 VVDEVQDSRLEVSLKDALEINRAYEVGDEIRFEVTPKDFGRLAAQTAKQVIMQRLREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ E+ EI++GTV+R + V V +GN + V+ ++ + EN P D+V+ +
Sbjct: 124 EHIISEYSQYKDEIVTGTVERRDNRFVYVKIGNVEAVMPHNDQLPGENYNPQDKVRVLVT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +G Q+ +SRT P + +LF EVPE+Y+G V++ +++R+ G R K+AV S+D
Sbjct: 184 RVGSDSKGAQITVSRTAPDLVKRLFEQEVPEVYDGTVEIVSIAREAGDRTKIAVKSNDPD 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305
IDPVG VG +G+RVQ +V EL E ID+V + + + F+ NAL PA V V D+D
Sbjct: 244 IDPVGTLVGPKGTRVQNIVNELGGENIDVVKYEENPSDFIANALNPAEVIAVQFSGDDDD 303
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
VIVP QLSLAIG+RGQNVRLA++LTG+ IDI E + + + T +
Sbjct: 304 KNALVIVPDYQLSLAIGKRGQNVRLAARLTGYKIDIKPESQVEFVDSEGDDVETDQDIDD 363
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408
NV A AE + ++ S D + E
Sbjct: 364 SNVSNEEATESTAEQLEEDSSEDFPNGEDVDSALDDDADKDEE 406
>gi|242242549|ref|ZP_04796994.1| transcription elongation factor NusA [Staphylococcus epidermidis
W23144]
gi|242233976|gb|EES36288.1| transcription elongation factor NusA [Staphylococcus epidermidis
W23144]
Length = 407
Score = 335 bits (858), Expect = 1e-89, Method: Composition-based stats.
Identities = 152/400 (38%), Positives = 233/400 (58%), Gaps = 4/400 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E
Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGSFRVIARKE 64
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + ++ L A ++P+ ++G + + P DFGRV Q+AKQ ++Q++R+AER
Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEVGDIYEQDVTPKDFGRVGAQAAKQAVMQRLRDAER 124
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+
Sbjct: 125 EILYDEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S +
Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSDNPD 244
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
ID VGACVG +G+RV+AVV EL EKIDIV W D FV NAL P+ V +V++DE+
Sbjct: 245 IDAVGACVGSKGARVEAVVEELGGEKIDIVQWDEDPKVFVRNALSPSQVLEVIVDEENQS 304
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
V+VP QLSLAIG+RGQN RLA++LT W IDI +E + E + + +N
Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTSWKIDIKSESDAREAGIYPVIETEEVADEIVN 364
Query: 368 VDEIIAH----LLVAEGFADVEELACVKISEIASIEGFDE 403
+ L E A + A E ++
Sbjct: 365 SGDEDVEFDNVNLEETNLTSTELAAETDEEKTAKTEEDND 404
>gi|229829176|ref|ZP_04455245.1| hypothetical protein GCWU000342_01261 [Shuttleworthia satelles DSM
14600]
gi|229792339|gb|EEP28453.1| hypothetical protein GCWU000342_01261 [Shuttleworthia satelles DSM
14600]
Length = 406
Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats.
Identities = 136/349 (38%), Positives = 215/349 (61%), Gaps = 3/349 (0%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY---GTMSDIRVEINPETGDISL 62
+LL+ DA+ E+ I ++ +L + S+ A + Y +++R ++ ETGD +
Sbjct: 3 NTDLLEALDALETERGISKEHILEAIEKSLVAACKVTYKFSDNATNLRAVVDRETGDFHV 62
Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
F VV+EV N ++SL+ A D D S+++G + L DF R+A +AK ++ Q +
Sbjct: 63 FVKKTVVDEVTNPQSEMSLEEAHDIDGSLNVGDTAEEELQSHDFSRIAASTAKNIMKQMI 122
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182
E ER E+ +I++G V+R N+ V+LG D + E + E+ DR+
Sbjct: 123 LEEERKILLDEYIKIEHDIVTGVVQRFIGRNISVNLGKVDAFLPESEQVKGEHYHQSDRI 182
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
+ Y+ +V+ +GP++ +SRTHP+ + +LF EV E+ +GIV++KA++R+ GSR K+AV+
Sbjct: 183 RVYVLEVKDAAKGPRIRVSRTHPELVKRLFEEEVTEVKDGIVEIKAIAREAGSRTKMAVW 242
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
S+D +DP+GACVG+ GSRV A+V EL +EKIDI+ W+ + A + NAL PA V V+ D
Sbjct: 243 SNDPDVDPLGACVGVNGSRVNAIVNELHNEKIDIINWNENPAMLIENALSPAKVIAVLAD 302
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351
ED +V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E +
Sbjct: 303 EDAREAKVVVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQAQEAE 351
>gi|270290314|ref|ZP_06196539.1| transcription termination factor NusA [Pediococcus acidilactici
7_4]
gi|270281095|gb|EFA26928.1| transcription termination factor NusA [Pediococcus acidilactici
7_4]
Length = 388
Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats.
Identities = 145/376 (38%), Positives = 221/376 (58%), Gaps = 3/376 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E++ + EK I + VV+ + ++ A + YG ++ VE N GDI ++ + +
Sbjct: 4 EMVTALANLEKEKGIKQSVVIEALEAALVSAYKRNYGQAQNVEVEFNERKGDIHVYAVKK 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEVE+ Q+SL A + + ++ + + P +FGR+A Q+AKQVI+Q+VREAER
Sbjct: 64 VVEEVEDDQLQVSLADALQINRAYELDDEIRFEVTPKNFGRIAAQTAKQVIMQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y ++ + E+++G V R + V VDLG + V+ + + I E P D +K Y+
Sbjct: 124 EVIYEKYSQYLDEMVTGEVVRRDNRYVYVDLGGVEAVMSKQDQIPGEQYEPHDHIKVYVT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RGPQ+ +SR+H + +LF E+PEIY+G V++ +V+R+ G RAK+AV S++
Sbjct: 184 KVEYSGRGPQIFVSRSHEGLLKRLFEQEIPEIYDGTVEIMSVAREAGDRAKVAVRSNNPD 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD-EDVG 306
ID VG CVG RG R+Q +V EL E +D++ W D A F+ NAL PA V V+ + E+
Sbjct: 244 IDAVGTCVGPRGQRIQTIVNELHGENMDVIEWEDDDAEFISNALNPAEVIDVLFNEEEEN 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
VIVP QLSLAIG+RGQN RLA++LT + IDI +E + + ++D +E I
Sbjct: 304 SCIVIVPDYQLSLAIGKRGQNARLAAKLTNYKIDIKSETDAAEFVEEDDDEEVADSATEI 363
Query: 367 N--VDEIIAHLLVAEG 380
DE V E
Sbjct: 364 ESSADESTVDENVLES 379
>gi|218133589|ref|ZP_03462393.1| hypothetical protein BACPEC_01458 [Bacteroides pectinophilus ATCC
43243]
gi|217990964|gb|EEC56970.1| hypothetical protein BACPEC_01458 [Bacteroides pectinophilus ATCC
43243]
Length = 393
Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats.
Identities = 142/380 (37%), Positives = 219/380 (57%), Gaps = 3/380 (0%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD--IRVEINPETGDISLF 63
EL+ DA+ EK I +D+++ + +S+ + +G D I V I+ TGD +F
Sbjct: 2 NKELIGALDALEKEKGISKDILIEAIENSLITGCKQHFGITKDDGIVVRIDRNTGDFRVF 61
Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
VVE VE+ QISL+ A + IG ++ + DF R+A Q AK +I+Q++R
Sbjct: 62 ITKRVVEHVEDPVEQISLEDAVKINSKAQIGNGINVEIKSEDFSRIAAQKAKGIILQRIR 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183
E ER Y E+ K +I++G V+R+ + ++LG D V+ E + E P +R+K
Sbjct: 122 EEERKSVYSEYAMKEKDIVTGIVQRINGDKISINLGKMDAVLLPKEQVKGEVFVPTERIK 181
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
Y+ V +G V +SR+HP + +LF EV E+ +G V++K ++R+ GSR K+AV+S
Sbjct: 182 LYVVSVTDTAKGVIVKVSRSHPDLVKRLFESEVTEVKDGTVEIKGIAREAGSRTKMAVWS 241
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
++ +DPVGACVG+ G+RV A+V ELR EKIDI+ WS + A + NAL PA V V+ D+
Sbjct: 242 NNPDVDPVGACVGLNGARVNAIVNELRGEKIDIINWSENPAILIENALSPAKVVSVIADD 301
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
+ +V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + + + + +
Sbjct: 302 EEKTAQVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSESQAREAGEYEGYN-EESYD 360
Query: 364 QAINVDEIIAHLLVAEGFAD 383
E + L E D
Sbjct: 361 DDAEYSENMNDALPDEDIQD 380
>gi|304384867|ref|ZP_07367213.1| transcription termination factor NusA [Pediococcus acidilactici DSM
20284]
gi|304329061|gb|EFL96281.1| transcription termination factor NusA [Pediococcus acidilactici DSM
20284]
Length = 388
Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats.
Identities = 145/376 (38%), Positives = 221/376 (58%), Gaps = 3/376 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E++ + EK I + VV+ + ++ A + YG ++ VE N GDI ++ + +
Sbjct: 4 EMVTALANLEKEKGIKQSVVIEALEAALVSAYKRNYGQAQNVEVEFNERKGDIHVYAVKK 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEVE+ Q+SL A + + ++ + + P +FGR+A Q+AKQVI+Q+VREAER
Sbjct: 64 VVEEVEDDQLQVSLADALQINRAYELDDEIRFEVTPKNFGRIAAQTAKQVIMQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y ++ + E+++G V R + V VDLG + V+ + + I E P D +K Y+
Sbjct: 124 EVIYEKYSQYLDEMVTGEVARRDNRYVYVDLGGVEAVMSKQDQIPGEQYEPHDHIKVYVT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RGPQ+ +SR+H + +LF E+PEIY+G V++ +V+R+ G RAK+AV S++
Sbjct: 184 KVEYSGRGPQIFVSRSHEGLLKRLFEQEIPEIYDGTVEIMSVAREAGDRAKVAVRSNNPD 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD-EDVG 306
ID VG CVG RG R+Q +V EL E +D++ W D A F+ NAL PA V V+ + E+
Sbjct: 244 IDAVGTCVGPRGQRIQTIVNELHGENMDVIEWEDDDAEFISNALNPAEVIDVLFNEEEEN 303
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
VIVP QLSLAIG+RGQN RLA++LT + IDI +E + + ++D +E I
Sbjct: 304 SCIVIVPDYQLSLAIGKRGQNARLAAKLTNYKIDIKSETDAAEFVEEDDDEEVADSATEI 363
Query: 367 N--VDEIIAHLLVAEG 380
DE V E
Sbjct: 364 ESSADESTVDENVLES 379
>gi|116629468|ref|YP_814640.1| transcription elongation factor NusA [Lactobacillus gasseri ATCC
33323]
gi|116095050|gb|ABJ60202.1| Transcription elongation factor [Lactobacillus gasseri ATCC 33323]
Length = 423
Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats.
Identities = 139/403 (34%), Positives = 228/403 (56%), Gaps = 2/403 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+++ + EK I +++++ + ++ A + Y ++ V + + G+ + +
Sbjct: 21 EMVEAFATLEKEKGIKQEIIVDAIKAALVAAYKKNYNQAQNVEVVFDEKKGNFKVNAIKT 80
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV++ ++SLK A + + + ++G + + P DFGR+A Q+AKQVI+Q++REAER
Sbjct: 81 VVDEVQDSRLEVSLKDALEINRAYEVGDEIRFEVTPKDFGRLAAQTAKQVIMQRLREAER 140
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ E+ EI++GTV+R + V V +GN + V+ ++ + EN P D+V+ +
Sbjct: 141 EHIISEYSQYKDEIVTGTVERRDNRFVYVKIGNVEAVMTHNDQLPGENYNPQDKVRVLVT 200
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +G Q+ +SRT P + +LF EVPE+Y+G V++ +++R+ G R K+AV S+D
Sbjct: 201 RVGSDSKGAQITVSRTAPDLVKRLFEQEVPEVYDGTVEIVSIAREAGDRTKIAVKSNDPD 260
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305
IDPVG VG +G+RVQ +V EL E ID+V + + + F+ NAL PA V V D+D
Sbjct: 261 IDPVGTLVGPKGTRVQNIVNELGGENIDVVKYEENPSDFIANALNPAEVIAVQFSGDDDD 320
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
VIVP QLSLAIG+RGQNVRLA++LTG+ IDI E + + + T +
Sbjct: 321 KNALVIVPDYQLSLAIGKRGQNVRLAARLTGYKIDIKPESQVEFVDSEGDDVETDQDIDD 380
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408
NV A AE + ++ S D + E
Sbjct: 381 SNVSNEEATESTAEQLEEDSSEDFPNGEDVDSALDDDADKDEE 423
>gi|314936573|ref|ZP_07843920.1| transcription termination factor NusA [Staphylococcus hominis
subsp. hominis C80]
gi|313655192|gb|EFS18937.1| transcription termination factor NusA [Staphylococcus hominis
subsp. hominis C80]
Length = 408
Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats.
Identities = 153/415 (36%), Positives = 237/415 (57%), Gaps = 12/415 (2%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E
Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGTFKVIARKE 64
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER
Sbjct: 65 VVEEVFDDREEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+
Sbjct: 125 EILYSEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNETYVPNERIKVYVN 184
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S +
Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSENPD 244
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
ID VGACVG +GSRV+AVV EL EKIDIV W D FV NAL P+ V +V++DED
Sbjct: 245 IDAVGACVGAKGSRVEAVVEELGGEKIDIVQWDEDPNVFVRNALSPSQVLEVIVDEDNQS 304
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + E + + +
Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPIIESEEKADEIVF 364
Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
++ + + + E E A++ + +
Sbjct: 365 SEDKDIE------------IDDINLEETNLTTAELSAEVDETSNEAQDASDNKEE 407
>gi|289450259|ref|YP_003474585.1| transcription termination factor NusA [Clostridiales genomosp.
BVAB3 str. UPII9-5]
gi|289184806|gb|ADC91231.1| transcription termination factor NusA [Clostridiales genomosp.
BVAB3 str. UPII9-5]
Length = 372
Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats.
Identities = 147/367 (40%), Positives = 225/367 (61%), Gaps = 2/367 (0%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG--TMSDIRVEINPETGDISLF 63
+EL++ + E+ ID +++ + +++ A + + + +IR E++ ETGD+ +F
Sbjct: 2 NVELIEAIKLLEKERGIDAEILFQSIEEALVSAYKREFDVKSSDNIRAEVDRETGDMQVF 61
Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
EVVEEV + + Q+SL+ AR P DIG V+ L P DFGR+A +AK VI QK+
Sbjct: 62 LEKEVVEEVADSSLQVSLEEARKFSPDFDIGDVLEYQLSPQDFGRLAAATAKNVINQKLC 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183
AER+R EF ++ E+ +G V+R + +VIVD+G ++ ++ +E + EN +++
Sbjct: 122 NAERERIQNEFSSRINELANGVVQRRDRRDVIVDIGRAEAILPGNEQVRGENYDFNKQMR 181
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
YI V + P V +SR+HP + KLF EVPEI +G V++ AVSR+ GSR+K+AV S
Sbjct: 182 LYILRVNEKMGRPVVYVSRSHPNLVRKLFEHEVPEIKDGTVEIMAVSREAGSRSKIAVRS 241
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
++ ++DP+GACVG RG RVQAV+ EL E+IDI+ WSP+ F+ NAL PA V V +
Sbjct: 242 NNENVDPLGACVGQRGMRVQAVMDELNGERIDIIQWSPNPEEFIANALSPAKVVSVEVAP 301
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
+ V+VP QL+LAIG+ GQN LA++LTGW IDI +E + N +++ R
Sbjct: 302 ESKMAAVVVPDNQLALAIGKEGQNAHLAARLTGWKIDIKSESQVRQNLEQELIHRFDRAA 361
Query: 364 QAINVDE 370
D
Sbjct: 362 SEYEADN 368
>gi|70726649|ref|YP_253563.1| transcription elongation factor NusA [Staphylococcus haemolyticus
JCSC1435]
gi|68447373|dbj|BAE04957.1| transcription termination-antitermination factor [Staphylococcus
haemolyticus JCSC1435]
Length = 410
Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats.
Identities = 154/404 (38%), Positives = 235/404 (58%), Gaps = 6/404 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E
Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGTFKVIARKE 64
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + ++ L A ++P+ ++G + + + P DFGRV Q+AKQ ++Q++R+AER
Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEVGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+
Sbjct: 125 EILYTEFIDKEDDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S +
Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSDNPD 244
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DED
Sbjct: 245 IDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVRNALSPSQVLEVIVDEDNQS 304
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + E + +
Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDARDAGIYPVIESEELAEDIVL 364
Query: 368 VDEIIAH------LLVAEGFADVEELACVKISEIASIEGFDEET 405
+ L E A + + + E EE
Sbjct: 365 SESDDEDIEIDDVNLEESNLTTAELAADIDETSENNEEADSEEK 408
>gi|229918666|ref|YP_002887312.1| NusA antitermination factor [Exiguobacterium sp. AT1b]
gi|229470095|gb|ACQ71867.1| NusA antitermination factor [Exiguobacterium sp. AT1b]
Length = 387
Score = 334 bits (856), Expect = 3e-89, Method: Composition-based stats.
Identities = 156/370 (42%), Positives = 221/370 (59%), Gaps = 6/370 (1%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLLE 67
LL D +A EK ID+++++ + ++ A R ++VE + TGDI ++ LLE
Sbjct: 5 LLTTIDQIAKEKGIDKNIIIDALEQALISAYRRNVANPNEHVKVEFDQVTGDIRVYALLE 64
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVE + Q+SL+ A + DP+ ++G + + P DFGRVA +AKQV+ QK+REAER
Sbjct: 65 VVERLTQPDQQLSLEEAHEIDPNYELGDFHKEEVTPSDFGRVAAMTAKQVVTQKMREAER 124
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186
+R Y F DK EI++G V+R + N+ + L N+ + V+ +E + E+ + DR+K Y+
Sbjct: 125 ERIYNHFADKEDEIMTGIVERFDPRNLYIGLENNIEAVLTPNEQMPNESYQIHDRIKVYV 184
Query: 187 YDVRREQRGP--QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
V +G + +SRTHP + +LF +EVPEI NG V V +VSR+ G R+K+AV S
Sbjct: 185 TKVDSTTKGSGAAIQVSRTHPGLLRRLFELEVPEISNGTVDVMSVSREAGDRSKIAVHS- 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
+DPVGACVG +G RVQ +V EL EKIDIV WS D FV NAL PA V V ++E
Sbjct: 244 -DIVDPVGACVGPKGQRVQTIVDELNGEKIDIVRWSEDPKEFVRNALSPAQVVAVYVNEP 302
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + D
Sbjct: 303 AKSTTVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAEALDLFDTFAEKVESEP 362
Query: 365 AINVDEIIAH 374
I +E+
Sbjct: 363 KIVQNEVEQD 372
>gi|167766535|ref|ZP_02438588.1| hypothetical protein CLOSS21_01041 [Clostridium sp. SS2/1]
gi|317498935|ref|ZP_07957218.1| transcription termination factor NusA [Lachnospiraceae bacterium
5_1_63FAA]
gi|167711658|gb|EDS22237.1| hypothetical protein CLOSS21_01041 [Clostridium sp. SS2/1]
gi|291558575|emb|CBL37375.1| transcription termination factor NusA [butyrate-producing bacterium
SSC/2]
gi|316893768|gb|EFV15967.1| transcription termination factor NusA [Lachnospiraceae bacterium
5_1_63FAA]
Length = 395
Score = 334 bits (856), Expect = 3e-89, Method: Composition-based stats.
Identities = 156/402 (38%), Positives = 239/402 (59%), Gaps = 10/402 (2%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
EL+ + + EK ID+DV++ + +S+ A + +G+ ++ V ++ ETGDI ++ + E
Sbjct: 3 ELIAALNQLEKEKGIDKDVIMEAIENSLLAACKRDFGSADNVVVNMDRETGDIYVYAIKE 62
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISL A+ D ++++G V + P DFGR+A A+ VI+QK++E ER
Sbjct: 63 VVDEVYDPALEISLGKAKAIDQNLNLGDTVRIEITPKDFGRIAAMHARSVIVQKIKEEER 122
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186
Y F K +I++G V+R NV V L +D ++ + E I E +P +R+K YI
Sbjct: 123 RVVYDHFYCKEKDIVTGVVQRYVGENVSVSLDDKTDALLMKSEQIRGEVFKPTERIKLYI 182
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
+V+ RGP++L+SRTHP + +LF EV EI +G V++K + R+ GSR K+AV+S+D
Sbjct: 183 VEVKETNRGPRILVSRTHPDLVKRLFEKEVAEIQDGTVEIKNIVREAGSRTKMAVWSNDK 242
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
++DPVGACVG+ G+RV A+V +L+ EKIDI+ W+ D F+ NAL P+ V V +D +
Sbjct: 243 NVDPVGACVGLNGARVNAIVNDLKGEKIDIINWNEDPCVFIENALSPSKVVSVAVDVEEK 302
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
EV+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + + K E
Sbjct: 303 SAEVVVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSESQAAEEAAKVSEEPEAD----- 357
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408
+ I L E D E ++E FD E E
Sbjct: 358 --EFEIEEDLFNEEINDDFVEDAENTEE--AVEDFDAEDIEE 395
>gi|258645576|ref|ZP_05733045.1| transcription termination factor NusA [Dialister invisus DSM 15470]
gi|260402934|gb|EEW96481.1| transcription termination factor NusA [Dialister invisus DSM 15470]
Length = 377
Score = 333 bits (855), Expect = 3e-89, Method: Composition-based stats.
Identities = 154/367 (41%), Positives = 226/367 (61%), Gaps = 4/367 (1%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
LLQ + + +K ++ DVV + + A + G+ + + ++ TG+ ++ V
Sbjct: 5 LLQAVNFLVDKKKVEADVVFDALEMVLLTAYKKEMGSNAKTSISLDRTTGEYKIYEEKTV 64
Query: 69 VE----EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VE E EN +I+++ A+ + G ++ + P DFGRVA Q+AKQV+IQK+RE
Sbjct: 65 VEVIDPESENAINEITVENAKKISKDYEAGDMLRVDVTPKDFGRVAAQAAKQVLIQKLRE 124
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER Y EF + G+II+GTVK E V VDLG +G++ E I E +P D++K
Sbjct: 125 AERGSIYEEFSGREGDIITGTVKWSESRTVFVDLGRVEGILPFAEQIEGETFQPNDKIKC 184
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
Y+ +VR+ +GP+++LSRTHP + +LF MEVPEIY+G V++K+V R+ GSRAK+AV++
Sbjct: 185 YVQEVRKTTKGPEIILSRTHPGLLKRLFEMEVPEIYSGTVEIKSVVREAGSRAKIAVYAM 244
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D ++DPVGACVG +G RVQ +V EL DEKIDIV W D A ++ NAL PA V V + ++
Sbjct: 245 DPNVDPVGACVGPKGQRVQNIVNELHDEKIDIVRWDEDPAIYIANALSPAKVVSVSVWDE 304
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
VIVP QLSLAIG+ GQN RLA++LT W IDI +E + + + E +
Sbjct: 305 ERSSYVIVPDYQLSLAIGKAGQNARLANKLTNWKIDIKSESQAAEEGFGEEIEEDDDILS 364
Query: 365 AINVDEI 371
I +
Sbjct: 365 DIETADT 371
>gi|295693137|ref|YP_003601747.1| transcription termination-antitermination factor nusa
[Lactobacillus crispatus ST1]
gi|295031243|emb|CBL50722.1| Transcription termination-antitermination factor NusA
[Lactobacillus crispatus ST1]
Length = 397
Score = 333 bits (855), Expect = 3e-89, Method: Composition-based stats.
Identities = 136/389 (34%), Positives = 218/389 (56%), Gaps = 2/389 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + K I +DV++ + ++ A + Y ++ V+ + G+ + +
Sbjct: 4 EMLEAFATLENTKGIKQDVIVDAIKAALVAAYKKNYNQAQNVEVDFDERKGNFKVMAVKT 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REAER
Sbjct: 64 VVDEVQDDRLEVSLKDALTINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ E+ E+++GTV+R + V V +GN + V+ + + E P D+++ +
Sbjct: 124 NHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAVMPHRDQMPNEVYNPQDQIRVLVT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +G Q+ +SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D +
Sbjct: 184 HVGSDSKGAQITVSRTAPDMVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSNDPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305
IDPVG CVG +G+RVQ VV EL E IDIV + D + F+ NAL PA V V DE+
Sbjct: 244 IDPVGTCVGQKGARVQNVVNELGGENIDIVKYEEDPSDFIANALNPAEVIAVQFGDDEEE 303
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E +K +
Sbjct: 304 KSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDEKTNDTADAADSSE 363
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISE 394
+ + +D E
Sbjct: 364 TSENVESTDDAADVESSDDTTTVEDSSKE 392
>gi|219850522|ref|YP_002464955.1| NusA antitermination factor [Chloroflexus aggregans DSM 9485]
gi|219544781|gb|ACL26519.1| NusA antitermination factor [Chloroflexus aggregans DSM 9485]
Length = 442
Score = 333 bits (855), Expect = 4e-89, Method: Composition-based stats.
Identities = 146/385 (37%), Positives = 230/385 (59%), Gaps = 5/385 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS---DIRVEINPETGDISL 62
+ + +A E+ I ++ ++ VM ++ A + L G ++ V+++P +G +
Sbjct: 2 KSDFYAAITQIASERGIPKEAIIDVMERALVSAYKRLLGPNPPAVEVTVKLDPVSGMARV 61
Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+ +VV+EV + +I L AR P + IG V P DFGR+A Q+AKQV++Q +
Sbjct: 62 YAEKQVVDEVYDERFEIDLNSARQIKPDVQIGETVLVESTPRDFGRIAAQTAKQVVLQGI 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVE--YGNVIVDLGNSDGVIRRDETISRENLRPGD 180
+E ER Y EF+D+ GE+++ TV+R GNVI+++G ++ +I E ++ + G
Sbjct: 122 KEIERSYIYSEFEDREGELVTATVQRNNGPRGNVILEIGKAEAIIPPKEQVANDRYYHGQ 181
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
R+K + +V+++ RGP+++ SR H + +LF MEVPEIYNG V++K+V+R+PG R K+A
Sbjct: 182 RLKVLLLEVKKDDRGPRLIASRAHKNLINRLFEMEVPEIYNGSVEIKSVAREPGLRTKVA 241
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V + IDPVG+CVGMRG R+Q +V EL EKID+V WS D ++ NAL PA V +V
Sbjct: 242 VAARQEGIDPVGSCVGMRGIRIQNIVNELNGEKIDVVQWSSDPREYIANALSPAQVVEVH 301
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
L + VIVP +QLSLAIG+ GQNVRLA++LTGW IDI + + R +
Sbjct: 302 LHDHDHTALVIVPDKQLSLAIGKEGQNVRLAAKLTGWRIDIKSASALLEEERAAAEARAE 361
Query: 361 FFMQAINVDEIIAHLLVAEGFADVE 385
+ + + +AH V + +
Sbjct: 362 AEAEQMVIAAELAHAPVEQRIVQAD 386
>gi|307243330|ref|ZP_07525494.1| transcription termination factor NusA [Peptostreptococcus stomatis
DSM 17678]
gi|306493277|gb|EFM65266.1| transcription termination factor NusA [Peptostreptococcus stomatis
DSM 17678]
Length = 423
Score = 333 bits (854), Expect = 4e-89, Method: Composition-based stats.
Identities = 158/391 (40%), Positives = 240/391 (61%), Gaps = 9/391 (2%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E +Q D + ++ ID+DV+L + ++ A + +G+ ++R+++N ETGDI ++
Sbjct: 2 NTEFIQALDELVRDRGIDKDVLLETIEQALTSAYKKNFGSAQNVRIDMNRETGDIKVYSQ 61
Query: 66 LEVVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
VV+E + + +I L AR+ +P+ ++G ++ + P DFGR+A Q+AKQ+++QK+R
Sbjct: 62 RVVVDESDLYDNFLEIELSEAREINPNYELGDIIEHEVTPKDFGRIAAQTAKQIVVQKIR 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRPG 179
EAER+ Y EF +K E+++G + R + V V +G +GV+ + E I E+ + G
Sbjct: 122 EAEREMTYNEFLEKQDELVTGEISRTSSRDGKQIVFVQIGKGEGVLLQSEQIRNEDYKIG 181
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
+K Y+ +V R + PQ+LLSRT+ + +LF MEVPEI GIV +K++SR+ GSR K+
Sbjct: 182 SNMKFYVLEVNRTNKNPQILLSRTNAGLVKRLFEMEVPEIQEGIVHIKSISREAGSRTKM 241
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV S D +IDP+GACVG +G+RV+ +V EL DEKIDIV +S D ATF+ AL P+ VT+V
Sbjct: 242 AVKSIDENIDPIGACVGTQGARVRNIVDELGDEKIDIVKYSDDPATFIEAALSPSKVTRV 301
Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
+DE VIVP QLSLAIG+ GQN RLA++LT W IDI E S ++
Sbjct: 302 FIDEANKSAIVIVPDYQLSLAIGKEGQNARLAARLTNWKIDIKPE---SEFGPEEEAALL 358
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACV 390
+ + E A LV E E A +
Sbjct: 359 EEIEKNKIAAEEEAKRLVEEAELKAHEEAEI 389
>gi|224476389|ref|YP_002633995.1| transcription elongation factor NusA [Staphylococcus carnosus
subsp. carnosus TM300]
gi|222420996|emb|CAL27810.1| putative transcription elongation protein NusA [Staphylococcus
carnosus subsp. carnosus TM300]
Length = 437
Score = 333 bits (854), Expect = 4e-89, Method: Composition-based stats.
Identities = 149/386 (38%), Positives = 233/386 (60%), Gaps = 3/386 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + + EK I R+V++ + ++ A + Y ++RVE+N + G + E
Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYEAARNVRVELNMDEGTFHVIARKE 64
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV++V + ++ + A +++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER
Sbjct: 65 VVDDVFDDREEVDISTALEKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y EF DK +I++G + RV++ V V+LG ++ V+ E E+ P +R+K Y+
Sbjct: 125 EILYDEFIDKEEDIVTGIIDRVDHRYVYVNLGRTEAVLSEAERSPNESYIPNERIKVYVN 184
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SR+HP + +LF EVPEIY+G V +K+V+R+ G R+K++V+S +
Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVVIKSVAREAGDRSKISVYSDNPD 244
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
ID VGACVG +G RV+A+V EL EKIDIV W+ D FV NAL P+ V +V++DE
Sbjct: 245 IDAVGACVGSKGVRVEAIVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLEVIVDEANQS 304
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
VIVP QLSLAIG+RGQN RLA++LTGW IDI +E S R+ +
Sbjct: 305 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE---SDAREAGIYPVPEVEETDDE 361
Query: 368 VDEIIAHLLVAEGFADVEELACVKIS 393
V E + +V + E+
Sbjct: 362 VTEDLTEEVVVGQVDEEPEVDVEAEE 387
>gi|328465727|gb|EGF36931.1| transcription elongation factor NusA [Lactobacillus helveticus MTCC
5463]
Length = 405
Score = 333 bits (854), Expect = 5e-89, Method: Composition-based stats.
Identities = 136/389 (34%), Positives = 220/389 (56%), Gaps = 2/389 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + K I +DV++ + ++ A + Y ++ V+ + G+ + +
Sbjct: 16 EMLEAFATLEKTKGIKQDVIVDAIKAALVAAYKKNYNQAQNVEVDFDERRGNFKVMAVKT 75
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV++ ++SLK A + ++G + + P +FGR+A Q+AKQVI+Q++REAER
Sbjct: 76 VVDEVQDDRLEVSLKDALAINRGYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREAER 135
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
E+ E+++GTV+R + V V +GN + ++ + + + E P D+++ +
Sbjct: 136 SHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAIMPQCDQMPNEVYNPQDQIRVLVT 195
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +G Q+++SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D +
Sbjct: 196 HVGSDSKGAQIVVSRTAPDVVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSNDPN 255
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305
IDPVG CVG +G+RVQ VV EL E ID+V + D + F+ NAL PA V V DE+
Sbjct: 256 IDPVGTCVGQKGARVQNVVNELGGENIDVVKYEEDPSDFIANALNPAEVIAVQFGDDEEE 315
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E +K + A
Sbjct: 316 KSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDEKSDDSAKSTETTA 375
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISE 394
+ EE + +E
Sbjct: 376 EEDSSADIDTADEDTTVQAEEKSSEDNTE 404
>gi|293366770|ref|ZP_06613446.1| transcription elongation factor NusA [Staphylococcus epidermidis
M23864:W2(grey)]
gi|291319071|gb|EFE59441.1| transcription elongation factor NusA [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329736653|gb|EGG72919.1| transcription termination factor NusA [Staphylococcus epidermidis
VCU045]
Length = 407
Score = 333 bits (853), Expect = 5e-89, Method: Composition-based stats.
Identities = 150/402 (37%), Positives = 235/402 (58%), Gaps = 1/402 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E
Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGSFRVIARKE 64
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + ++ L A ++P+ ++G + + P DFGRV Q+AKQ ++Q++R+AER
Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEVGDIYEQDVTPKDFGRVGAQAAKQAVMQRLRDAER 124
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+
Sbjct: 125 EILYDEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S +
Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSDNPD 244
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
ID VGACVG +G+RV+AVV EL EKIDIV W D FV NAL P+ V +V++DE+
Sbjct: 245 IDAVGACVGSKGARVEAVVEELGGEKIDIVQWDEDPKVFVRNALSPSQVLEVIVDEENQS 304
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
V+VP QLSLAIG+RGQN RLA++LT W IDI +E + E + + +N
Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTSWKIDIKSESDAREAGIYPVIESEEVADEIVN 364
Query: 368 VDEIIAHL-LVAEGFADVEELACVKISEIASIEGFDEETAVE 408
+ V ++ ++ + +E+ E
Sbjct: 365 SGDEDVEFDNVNLEETNLTSTELAAENDEDKKDKTEEDNDTE 406
>gi|329736283|gb|EGG72555.1| transcription termination factor NusA [Staphylococcus epidermidis
VCU028]
Length = 404
Score = 333 bits (853), Expect = 5e-89, Method: Composition-based stats.
Identities = 152/399 (38%), Positives = 233/399 (58%), Gaps = 2/399 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E
Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGSFRVIARKE 64
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + ++ L A ++P+ ++G + + P DFGRV Q+AKQ ++Q++R+AER
Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEVGDIYEQDVTPKDFGRVGAQAAKQAVMQRLRDAER 124
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+
Sbjct: 125 EILYDEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S +
Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSDNPD 244
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
ID VGACVG +G+RV+AVV EL EKIDIV W D FV NAL P+ V +V++DE+
Sbjct: 245 IDAVGACVGSKGARVEAVVEELGGEKIDIVQWDEDPKVFVRNALSPSQVLEVIVDEENQS 304
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
V+VP QLSLAIG+RGQN RLA++LT W IDI +E + E + + +N
Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTSWKIDIKSESDAREAGIYPVIESEEVADEIVN 364
Query: 368 VDEII--AHLLVAEGFADVEELACVKISEIASIEGFDEE 404
+ + E + E + E D E
Sbjct: 365 SGDEDVEFDNVNLEETNLTSTELAAENDEDKTEEDNDTE 403
>gi|291460012|ref|ZP_06599402.1| transcription termination factor NusA [Oribacterium sp. oral taxon
078 str. F0262]
gi|291417353|gb|EFE91072.1| transcription termination factor NusA [Oribacterium sp. oral taxon
078 str. F0262]
Length = 444
Score = 333 bits (853), Expect = 5e-89, Method: Composition-based stats.
Identities = 155/388 (39%), Positives = 224/388 (57%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
EL + + EK I + ++ + S+Q A R+ +G+ ++RV ++PE+ D S+
Sbjct: 2 NTELRDALELLEKEKGIPKQALIEAIELSLQTACRNHFGSADNVRVNVDPESCDFSVIAD 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVE V N +I L A+ DP ++G +V P+ FGR+A Q+AK VI+QK+RE
Sbjct: 62 KTVVETVSNPIAEIGLSEAKLVDPKYELGDIVQVPVDSRSFGRIATQNAKGVIVQKIREE 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y E+ E++SG V+R ++IV+LG DG + +E + E L P DR+K Y
Sbjct: 122 ERRVLYREYYSMAREVVSGVVERDTGRSIIVNLGRVDGYLSENEQVKGEVLNPTDRIKVY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ +VR +GP+VLLSRTHP+ + KLF E PEI GIV+++A++R+ GSR K+AV S+D
Sbjct: 182 VVEVRDSPKGPRVLLSRTHPELVKKLFEEEAPEIREGIVEIRAIAREAGSRTKMAVLSND 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DPVG+CVG+ G+RV AVV ELR EKIDI+ + + A + NAL PA V V+ D D
Sbjct: 242 PDVDPVGSCVGLDGTRVNAVVEELRGEKIDIINYDENPAYLIENALSPAKVIAVIADPDN 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
VIVP QLSLAIG+ GQN RL+++LTG+ IDI +E + D
Sbjct: 302 KDAMVIVPDTQLSLAIGKEGQNARLSAKLTGYKIDIKSESQAQEQGIFDEMGIDYRGEGE 361
Query: 366 INVDEIIAHLLVAEGFADVEELACVKIS 393
++ E F E
Sbjct: 362 EGEEDYDFPEDDGEEFTGESEQEDFSED 389
>gi|46446396|ref|YP_007761.1| transcription elongation factor NusA [Candidatus Protochlamydia
amoebophila UWE25]
gi|46400037|emb|CAF23486.1| putative transcription termination-antitermination factor nusA
[Candidatus Protochlamydia amoebophila UWE25]
Length = 424
Score = 333 bits (853), Expect = 5e-89, Method: Composition-based stats.
Identities = 150/420 (35%), Positives = 247/420 (58%), Gaps = 10/420 (2%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+L+ I + + EK I R++V+S + +S+Q AAR S++ V I+P+TG+I ++
Sbjct: 2 NKDLIAIFEYLEREKGIKRELVISAIEESLQAAARKSVSGASNVTVTIHPKTGNIDVYCE 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
E+V++VE + +ISL AR+ DP +IG + + P DFGR+A Q A+Q+I QK+R A
Sbjct: 62 KEIVDDVEVPSQEISLLAAREIDPDAEIGQFIDIVVTPKDFGRIAAQKARQIITQKLRGA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
ERD Y E++ ++ E+ISGT+KR N+I+DLG + ++ E E + G++V +
Sbjct: 122 ERDVIYEEYRHRINELISGTIKRFVRGSNLIIDLGKVEAILPTREYPKTEKYQVGEKVLA 181
Query: 185 YIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+ +V E G +V+LSR+HP+F+ +L EVPE+ +G + + + RD G R KL V S
Sbjct: 182 LVLEVKDTENGGAEVILSRSHPEFVKQLLVQEVPEVSDGTIIIDKIVRDAGYRTKLTVRS 241
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
+D +DPVGACVGMRG+RV+ +V EL +EKIDI+ +S D + NAL P + K+ L+E
Sbjct: 242 TDLKVDPVGACVGMRGNRVKNIVRELHNEKIDIIPFSNDPIELLQNALSPIEIRKINLNE 301
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
+ G I ++V + + IG++G N RL S+L G+ +++ + + + NE
Sbjct: 302 EDGIISIVVEDDDFAAVIGKKGMNARLNSRLIGYDLEVQRMTDYNRAMAIERNELAATDD 361
Query: 364 QAI--------NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415
+ ++ +I LV G+ ++ L E+A+I G E A +I + R+
Sbjct: 362 PTLDQPLVGIEGINSLIFDHLVDAGYHTLKSLLTATPKELAAIPGISLEMADKILEQIRK 421
>gi|329724329|gb|EGG60841.1| transcription termination factor NusA [Staphylococcus epidermidis
VCU144]
Length = 407
Score = 333 bits (853), Expect = 6e-89, Method: Composition-based stats.
Identities = 151/402 (37%), Positives = 235/402 (58%), Gaps = 1/402 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E
Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGSFRVIARKE 64
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + ++ L A ++P+ ++G + + P DFGRV Q+AKQ ++Q++R+AER
Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEVGDIYEQDVTPKDFGRVGAQAAKQAVMQRLRDAER 124
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+
Sbjct: 125 EILYDEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S +
Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSDNPD 244
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
ID VGACVG +G+RV+AVV EL EKIDIV W D FV NAL P+ V +V++DE+
Sbjct: 245 IDAVGACVGSKGARVEAVVEELGGEKIDIVQWDEDPKVFVRNALSPSQVLEVIVDEENQS 304
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
V+VP QLSLAIG+RGQN RLA++LT W IDI +E + E + + +N
Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTSWKIDIKSESDAREAGIYPVIETEEVADEIVN 364
Query: 368 VDEIIAHL-LVAEGFADVEELACVKISEIASIEGFDEETAVE 408
+ V ++ ++ E +E+ E
Sbjct: 365 SGDEDVEFDNVNLEETNLTSTELAAETDEDKKEKTEEDNDTE 406
>gi|255524231|ref|ZP_05391190.1| NusA antitermination factor [Clostridium carboxidivorans P7]
gi|296185352|ref|ZP_06853762.1| transcription termination factor NusA [Clostridium carboxidivorans
P7]
gi|255512056|gb|EET88337.1| NusA antitermination factor [Clostridium carboxidivorans P7]
gi|296050186|gb|EFG89610.1| transcription termination factor NusA [Clostridium carboxidivorans
P7]
Length = 368
Score = 333 bits (853), Expect = 6e-89, Method: Composition-based stats.
Identities = 145/367 (39%), Positives = 233/367 (63%), Gaps = 4/367 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDIS 61
E ++ + EK I D++ + + D++ A + Y G +++V +N E G+I
Sbjct: 2 NQEFIEALKEIVKEKGISEDLLFTTIEDALVAAYKKNYINQGGNNQNVKVTMNRENGEIH 61
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
++ V++EV + +ISL+ A+ DP+ DI VVS + P FGRVA Q+AKQV+IQ+
Sbjct: 62 VYSQKTVIDEVFDEINEISLEEAKSIDPNYDIDDVVSIEVTPKKFGRVAAQAAKQVVIQR 121
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
++E ER Y +F +K +II+G V R + NV+VDLG ++ V+ +E + E D+
Sbjct: 122 IKEEERRIVYNDFIEKEDDIITGAVIRKDKNNVLVDLGKTEAVLGPNEQMPGEKYNFNDK 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K YI +V+ +G Q+++SRTHP + +LF +EVPEI++G V++K+++R+ GSR K+AV
Sbjct: 182 IKLYIVEVKNTTKGAQIVISRTHPGLVKRLFELEVPEIFDGTVEIKSIAREAGSRTKIAV 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+D ++DP+GACVG +G RVQ +V EL++EKIDI+ WS ++ NAL PA V V L
Sbjct: 242 NSNDENVDPMGACVGPKGIRVQNIVNELKNEKIDIIKWSKLPEEYIANALSPAKVIDVTL 301
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DE+ +++V QLSLAIG+ GQNVRLA++LTGW IDI ++ + + + + +
Sbjct: 302 DEENKFAQIVVDDNQLSLAIGKEGQNVRLAAKLTGWKIDIKSKSQVETVPEVETVSQAED 361
Query: 362 FMQAINV 368
++
Sbjct: 362 ISDEEDI 368
>gi|27467860|ref|NP_764497.1| transcription elongation factor NusA [Staphylococcus epidermidis
ATCC 12228]
gi|251810697|ref|ZP_04825170.1| transcription elongation factor NusA [Staphylococcus epidermidis
BCM-HMP0060]
gi|282876302|ref|ZP_06285169.1| transcription termination factor NusA [Staphylococcus epidermidis
SK135]
gi|27315405|gb|AAO04539.1|AE016747_36 transcription termination-antitermination factor [Staphylococcus
epidermidis ATCC 12228]
gi|251805857|gb|EES58514.1| transcription elongation factor NusA [Staphylococcus epidermidis
BCM-HMP0060]
gi|281295327|gb|EFA87854.1| transcription termination factor NusA [Staphylococcus epidermidis
SK135]
Length = 407
Score = 332 bits (852), Expect = 7e-89, Method: Composition-based stats.
Identities = 153/401 (38%), Positives = 236/401 (58%), Gaps = 3/401 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E
Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGSFRVIARKE 64
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + ++ L A ++P+ ++G + + P DFGRV Q+AKQ ++Q++R+AER
Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEVGDIYEQDVTPKDFGRVGAQAAKQAVMQRLRDAER 124
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+
Sbjct: 125 EILYDEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S +
Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSDNPD 244
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
ID VGACVG +G+RV+AVV EL EKIDIV W D FV NAL P+ V +V++DE+
Sbjct: 245 IDAVGACVGSKGARVEAVVEELGGEKIDIVQWDEDPKVFVRNALSPSQVLEVIVDEENQS 304
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ---FFMQ 364
V+VP QLSLAIG+RGQN RLA++LT W IDI +E + E + +
Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTSWKIDIKSESDAREAGIYPVIESEEVADEIVN 364
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEET 405
+ + D ++ + E ELA + D +T
Sbjct: 365 SGDEDVEFDNVNLEETNLTSTELAAETDEDKKDKTEEDNDT 405
>gi|58337537|ref|YP_194122.1| transcription elongation factor NusA [Lactobacillus acidophilus
NCFM]
gi|58254854|gb|AAV43091.1| transcription termination-antitermination factor [Lactobacillus
acidophilus NCFM]
Length = 389
Score = 332 bits (852), Expect = 8e-89, Method: Composition-based stats.
Identities = 132/360 (36%), Positives = 217/360 (60%), Gaps = 2/360 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + K I++DV++ + ++ A + Y ++ V+ + G+ + +
Sbjct: 4 EMLEAFATLEKNKGIEQDVIVDAIKAALVAAYKKNYNQAQNVEVDFDERKGNFKVMAVKT 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REAER
Sbjct: 64 VVDEVQDDRLEVSLKDALAINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ E+ E+++GTV+R + V V +GN + V+ + + E P D+++ +
Sbjct: 124 NHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAVMPHRDQMPNEVYNPQDQIRVLVT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +G Q+ +SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D +
Sbjct: 184 HVGSDSKGAQITVSRTAPDMVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSNDPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT--KVVLDEDV 305
IDPVG CVG +G+RVQ VV EL E IDIV + D + ++ NAL PA V + DE+
Sbjct: 244 IDPVGTCVGQKGARVQNVVNELGGENIDIVKYEEDPSDYIANALNPAEVIAVQFGEDEEE 303
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E +K + ++ +
Sbjct: 304 KSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDEKSTDSVSKEDTDS 363
>gi|210622610|ref|ZP_03293270.1| hypothetical protein CLOHIR_01218 [Clostridium hiranonis DSM 13275]
gi|210154111|gb|EEA85117.1| hypothetical protein CLOHIR_01218 [Clostridium hiranonis DSM 13275]
Length = 390
Score = 332 bits (852), Expect = 8e-89, Method: Composition-based stats.
Identities = 145/364 (39%), Positives = 228/364 (62%), Gaps = 2/364 (0%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E L + + K ID++V++ + ++ A + +G ++ VE + + GDI ++
Sbjct: 2 NQEFLNALNEIVETKGIDKEVLIDTIEQALLTAYKKNFGQARNVEVEFDRDNGDIKVYST 61
Query: 66 LEVVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
VV+E + + +I L AR PS +IG V+ + + P +FGR+A Q+AKQV++Q++R
Sbjct: 62 RTVVDESDYYDSFLEIELSEARKISPSYEIGDVIRNEVTPSNFGRIAAQTAKQVVVQRLR 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183
EAER+ Y EF ++ EI+ G + R V VDLG +GV+ R E I E + G R+K
Sbjct: 122 EAEREIVYNEFMERESEIVDGEITRATPSVVYVDLGKIEGVMPRSEKIDNETYKEGQRIK 181
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
Y+ +V++ +GPQ+++SR++ + +LF +EVPEI GIVQ+K+++R+ GSR K+AV S
Sbjct: 182 VYVVEVKKGSKGPQIIVSRSNKGLVGRLFELEVPEIEQGIVQIKSIAREAGSRTKMAVKS 241
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
D IDP+GACVG +GSRV+ +V EL DEKIDI+ +S D A ++ +L P+ V KV ++E
Sbjct: 242 LDDKIDPIGACVGPKGSRVKNIVDELGDEKIDIIKYSDDFAEYISASLSPSKVVKVEVNE 301
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
+ V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + + ++ +
Sbjct: 302 EEKSALVVVPDYQLSLAIGKDGQNARLAAKLTGWKIDIKSESQYEEDLANGVYDKKEESE 361
Query: 364 QAIN 367
N
Sbjct: 362 LEFN 365
>gi|161507684|ref|YP_001577638.1| transcription elongation factor NusA [Lactobacillus helveticus DPC
4571]
gi|160348673|gb|ABX27347.1| transcription termination-antitermination factor [Lactobacillus
helveticus DPC 4571]
Length = 393
Score = 332 bits (852), Expect = 8e-89, Method: Composition-based stats.
Identities = 136/389 (34%), Positives = 221/389 (56%), Gaps = 2/389 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + K I +DV++ + ++ A + Y ++ V+ + G+ + +
Sbjct: 4 EMLEAFATLEKTKGIKQDVIVDAIKAALVAAYKKNYNQAQNVEVDFDERRGNFKVMAVKT 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REAER
Sbjct: 64 VVDEVQDDRLEVSLKDALAINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
E+ E+++GTV+R + V V +GN + ++ + + + E P D+++ +
Sbjct: 124 SHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAIMPQCDQMPNEVYNPQDQIRVLVT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +G Q+++SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D +
Sbjct: 184 HVGSDSKGAQIVVSRTAPDVVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSNDPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305
IDPVG CVG +G+RVQ VV EL E ID+V + D + F+ NAL PA V V DE+
Sbjct: 244 IDPVGTCVGQKGARVQNVVNELGGENIDVVKYEEDPSDFIANALNPAEVIAVQFGDDEEE 303
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E +K + A
Sbjct: 304 KSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDEKSDDSAKSTETTA 363
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISE 394
+ EE + +E
Sbjct: 364 EEDSSADTDTADEDTTVQAEEKSSEDNTE 392
>gi|309389230|gb|ADO77110.1| NusA antitermination factor [Halanaerobium praevalens DSM 2228]
Length = 408
Score = 332 bits (851), Expect = 1e-88, Method: Composition-based stats.
Identities = 153/403 (37%), Positives = 247/403 (61%), Gaps = 4/403 (0%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+E +Q D + +K I ++V+L + ++ A + +G+ ++R+EI+ E G++ +F
Sbjct: 2 NIEFIQALDDIEKDKGISKEVLLDAIETALVSAYKKDFGSKDNVRIEISAEAGEVKVFSR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
EVVEEVEN +ISL A + D IG +V + P +FGR+A Q+AKQV++Q++REA
Sbjct: 62 KEVVEEVENKNSEISLIEAENIDSKYTIGDIVEIEVTPANFGRIAAQTAKQVVMQRIREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ERD + ++K+K E+I+GT++R N+++D+G ++ ++ E I+ E G+R+K Y
Sbjct: 122 ERDVIFDQYKEKEDELITGTIQRFHNDNILIDMGKTEALLPPSEQIAGERYEIGERIKLY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ +V +GP++L+SRTHP + +LF +EVPEI+ G+V++K V+R+ G R+K+AV S++
Sbjct: 182 VVEVSTTNKGPRILVSRTHPGLLKRLFEIEVPEIFQGLVEIKEVAREAGQRSKMAVSSTE 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DPVG+CVG +G RVQAVV +L +EKIDIV W D FV NAL PA V V +++
Sbjct: 242 KQVDPVGSCVGPKGMRVQAVVDQLNNEKIDIVKWDEDPEVFVANALNPAEVISVDINKSE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
V+VP QLSLAIG+ GQN RLA++LTGW +DI E E +K ++ +
Sbjct: 302 KIARVVVPDFQLSLAIGKEGQNARLAAKLTGWKVDIKKESEIEAEIEK---KKIEKNASE 358
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408
+ + A K++E I+ + + +
Sbjct: 359 LAKSLDKFEENIEAEMETDNLEAAEKVNENL-IDKMENDLDEQ 400
>gi|329769654|ref|ZP_08261058.1| transcription termination factor NusA [Gemella sanguinis M325]
gi|328838409|gb|EGF88018.1| transcription termination factor NusA [Gemella sanguinis M325]
Length = 343
Score = 332 bits (851), Expect = 1e-88, Method: Composition-based stats.
Identities = 142/336 (42%), Positives = 213/336 (63%), Gaps = 2/336 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
+LL+ + EK I D+++ + ++ A + + ++RV+ N TGD +
Sbjct: 4 DLLKAIKLIEQEKGIAEDILVEAIELALLSAYKKNFNAAKNVRVDFNRATGDYKFIIRKD 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + + +L+ A +P+ ++G + + P DFGRV Q+AKQ ++Q++REAE+
Sbjct: 64 VVEEVYDDRIEFALEDALKINPAYEVGDIYEEEDLPSDFGRVGAQAAKQALLQRLREAEK 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ + E+ + GEI+SGTV R++ V V LG + ++ +E + E P +K YI
Sbjct: 124 EILFKEYSEYEGEILSGTVDRIDTRYVYVKLGKIEAILGENERVPGEEYVPQTPIKVYIA 183
Query: 188 DVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
V R P VL SR+HP+F+ +LF +EVPEIYNG+V++K+VSR+ G R K+AV+S D
Sbjct: 184 KVDNPSRGSKPHVLASRSHPEFIRRLFEIEVPEIYNGVVEIKSVSREAGDRTKIAVYSED 243
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+IDPVGACVG +G RV +V+EL EKIDI+ W D F+ NAL PA V ++ +DE+
Sbjct: 244 KNIDPVGACVGNKGERVNRIVSELNGEKIDIITWDADPVKFITNALAPAKVEEISIDEEE 303
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
V V +QLSLAIG++GQNVRLA++LTGW IDI
Sbjct: 304 KIANVKVKDDQLSLAIGKKGQNVRLAAKLTGWKIDI 339
>gi|88608874|ref|YP_506405.1| N utilization substance protein A [Neorickettsia sennetsu str.
Miyayama]
gi|88601043|gb|ABD46511.1| N utilization substance protein A [Neorickettsia sennetsu str.
Miyayama]
Length = 537
Score = 332 bits (851), Expect = 1e-88, Method: Composition-based stats.
Identities = 186/549 (33%), Positives = 299/549 (54%), Gaps = 56/549 (10%)
Query: 3 SANRLELLQIADAV----AYEKSIDRDVVLSVMADSIQK-AARSLYGTMSDIRVEINPET 57
S N L LQI +++ E + D + + + + YG I VEI+ ++
Sbjct: 4 SNNGLSNLQIVESINSVAEKE-GLSPDTLFRAIGIELAHEIGKRQYG-DHRIFVEIDKKS 61
Query: 58 GDISLFRLLEVVEEVE----------------------------NYTCQISLKVARDRDP 89
G+I + + L VVE+ + +Y I L AR + P
Sbjct: 62 GEILVSKRLLVVEDSDKARMLEQMEVTTEESDDLPSSFRAEEKVHYDGVIDLSTARLKYP 121
Query: 90 SID--IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV- 146
SI+ G ++++ LP G + + K + + + R++QY +K +VGEI++G V
Sbjct: 122 SIEHKAGDIITEHLPSFSSGYIIARVMKAKLERLITSLVREKQYHCYKGRVGEIVTGIVK 181
Query: 147 ----KRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202
+ ++IVD+ +G++ + E+ RPG+RVK I V PQ+LLSR
Sbjct: 182 KSIDFKTGSRSIIVDIAGVEGLLPYSSLVKGESFRPGERVKCVIQKVEYSVVKPQILLSR 241
Query: 203 THPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRV 262
+ F+ +LF +VPEIY+ +V+++ V+RD GSR+K+AVFSSD +IDPVGAC+GM GSR+
Sbjct: 242 SSGSFVAQLFSQQVPEIYDRVVEIRKVARDAGSRSKVAVFSSDRNIDPVGACIGMGGSRI 301
Query: 263 QAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIG 322
AVV EL EKIDIV +S D+ATF+ NAL+P K+ ++E+ +IE++VP E +SL IG
Sbjct: 302 NAVVNELHGEKIDIVEYSNDTATFLANALKPIRPVKITVNEETKKIELVVPDESVSLVIG 361
Query: 323 RRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFA 382
R GQNV L S L G+ ++++++ E S + ++F T F++A+NV+E+IA LLV EGF+
Sbjct: 362 RGGQNVYLLSSLLGYRVEVLSDAEFSKKKMEEFISGTARFVEALNVEEVIAQLLVTEGFS 421
Query: 383 DVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPG 442
VEE+A S +A IEGFD++ A EI+ RA EY+ ++ + + + ++
Sbjct: 422 TVEEIADCNTSRLAFIEGFDKDIAEEIRSRAVEYVNEQPKRVRALAEKYKANPNMLALSS 481
Query: 443 IDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMI 502
D+ + L +G+ +E +A S D+L + G + E +I
Sbjct: 482 FDTGLLEVLFSSGLTDLEKVAELSCDELREVIGDNGFGVPLL--------------EQLI 527
Query: 503 IHARYKMGW 511
I +R +GW
Sbjct: 528 IRSRKTLGW 536
>gi|300854498|ref|YP_003779482.1| transcription elongation protein [Clostridium ljungdahlii DSM
13528]
gi|300434613|gb|ADK14380.1| transcription elongation protein [Clostridium ljungdahlii DSM
13528]
Length = 354
Score = 331 bits (850), Expect = 1e-88, Method: Composition-based stats.
Identities = 141/353 (39%), Positives = 229/353 (64%), Gaps = 4/353 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM----SDIRVEINPETGDIS 61
E ++ + EK I D++ + + D++ A + Y +++V +N E G+I
Sbjct: 2 NQEFIEALKEIVKEKGISEDLLFTTIEDALVAAYKKNYMGHGAGSQNVKVTMNRENGEIH 61
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
++ VVEEV + +IS++ A+ D S ++G + + + P FGRVA Q+AKQV+IQ+
Sbjct: 62 VYSQKNVVEEVCDKFGEISVEDAKSMDSSYEVGDIANIEVTPRKFGRVAAQAAKQVVIQR 121
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
++E ER Y +F +K +II+GTV R + NV++DLG ++ V+ +E I E D+
Sbjct: 122 IKEEERRIIYSDFAEKEDDIITGTVIRKDKNNVLIDLGKTEAVLGPNEQIPGEKYNFNDK 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K YI +V+ +G Q+++SRTHP + +LF +EVPEI++G V +K+++R+ GSR K+AV
Sbjct: 182 LKLYIIEVKNTTKGAQIVISRTHPGLIKRLFELEVPEIFDGTVDIKSIAREAGSRTKIAV 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+D ++DP+GACVG +G RVQ +V EL++EKIDI+ WS ++ N+L PA V V L
Sbjct: 242 HSNDENVDPMGACVGPKGVRVQNIVNELKNEKIDIIKWSKLPEEYIANSLSPAKVLDVDL 301
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354
+ED+ +++V QLSLAIG+ GQNVRLA++LTGW IDI ++ + +++
Sbjct: 302 NEDIKFAQIVVDDNQLSLAIGKEGQNVRLAAKLTGWKIDIKSKSQVETQNEEN 354
>gi|57866748|ref|YP_188415.1| transcription elongation factor NusA [Staphylococcus epidermidis
RP62A]
gi|57637406|gb|AAW54194.1| N utilization substance protein A, putative [Staphylococcus
epidermidis RP62A]
Length = 407
Score = 331 bits (850), Expect = 1e-88, Method: Composition-based stats.
Identities = 152/401 (37%), Positives = 235/401 (58%), Gaps = 3/401 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E
Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGSFRVIARKE 64
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + ++ L A ++P+ ++G + + P DFGRV Q+AKQ ++Q++R+AER
Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEVGDIYEQDVTPKDFGRVGAQAAKQAVMQRLRDAER 124
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y EF DK +I++G + RV++ V V+ G + V+ E E P +R+K Y+
Sbjct: 125 EILYDEFIDKEEDILTGVIDRVDHRYVYVNFGRIEAVLSEAERSPNEKYIPNERIKVYVN 184
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S +
Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSDNPD 244
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
ID VGACVG +G+RV+AVV EL EKIDIV W D FV NAL P+ V +V++DE+
Sbjct: 245 IDAVGACVGSKGARVEAVVEELGGEKIDIVQWDEDPKVFVRNALSPSQVLEVIVDEENQS 304
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ---FFMQ 364
V+VP QLSLAIG+RGQN RLA++LT W IDI +E + E + +
Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTSWKIDIKSESDAREAGIYPVIESEEVADEIVN 364
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEET 405
+ + D ++ + E ELA + D +T
Sbjct: 365 SGDEDVEFDNVNLEETNLTSTELAAETDEDKKDKTEEDNDT 405
>gi|227878819|ref|ZP_03996726.1| transcription elongation factor NusA [Lactobacillus crispatus
JV-V01]
gi|227861567|gb|EEJ69179.1| transcription elongation factor NusA [Lactobacillus crispatus
JV-V01]
Length = 407
Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats.
Identities = 135/389 (34%), Positives = 216/389 (55%), Gaps = 2/389 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + K I +DV++ + ++ A + Y ++ V+ + G+ + +
Sbjct: 14 EMLEAFATLENTKGIKQDVIVDAIKAALVAAYKKNYNQAQNVEVDFDERKGNFKVMAVKT 73
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REAER
Sbjct: 74 VVDEVQDDRLEVSLKDALTINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREAER 133
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
E+ E+++GTV+R + V V +GN + V+ + + E P D+++ +
Sbjct: 134 KHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAVMPHRDQMPNEVYNPQDQIRVLVT 193
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +G Q+ +SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D +
Sbjct: 194 HVGSDSKGAQITVSRTAPDMVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSNDPN 253
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305
IDPVG CVG +G+RVQ VV EL E IDIV + D + F+ NAL PA V V DE+
Sbjct: 254 IDPVGTCVGQKGARVQNVVNELGGENIDIVKYEEDPSDFIANALNPAEVIAVQFGDDEEE 313
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
VIVP QLSLAIG++GQNVRLA++LT + IDI E E +K +
Sbjct: 314 KSALVIVPDYQLSLAIGKKGQNVRLAARLTSYKIDIRPESEVEFVDEKTNDTADAADSSE 373
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISE 394
+ + +D E
Sbjct: 374 TSENVESTDDAADVESSDDTTTVEDSSKE 402
>gi|302874660|ref|YP_003843293.1| NusA antitermination factor [Clostridium cellulovorans 743B]
gi|307690726|ref|ZP_07633172.1| transcription elongation factor NusA [Clostridium cellulovorans
743B]
gi|302577517|gb|ADL51529.1| NusA antitermination factor [Clostridium cellulovorans 743B]
Length = 356
Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats.
Identities = 145/345 (42%), Positives = 223/345 (64%), Gaps = 4/345 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDIS 61
+ L + EK I D + + D++ A + Y T + +V +N ETGDI
Sbjct: 2 NADFLLALKEIVKEKGISEDQLFETIEDAMVAAYKKNYSKGSETNQNFKVTMNRETGDIK 61
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
+F ++VE V N +I+L+ A++ DP +IG +V + P DFGRVA Q+AKQ++IQ+
Sbjct: 62 VFSRKDIVENVLNPVNEITLEEAKNYDPRYEIGEIVDIEVTPKDFGRVAAQAAKQLVIQR 121
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
++EAER+ Y EF +K +II+GTV R + NV+V++G + V+ E I E ++
Sbjct: 122 IKEAERNLIYEEFAEKEFDIINGTVIRKDKKNVLVNIGRIETVLNESEQIPGEQYNFNEK 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K Y+ +V++ +GP +++SRTHP + +LF +EVPEIY GIV++K+++R+ GSR K+AV
Sbjct: 182 LKLYVVEVKKTSKGPSIVVSRTHPNLVKRLFEIEVPEIYEGIVEIKSIAREAGSRTKIAV 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
+S+D +D +GACVG +G RVQ +V EL +EKIDI+ W+ ++ N+L PA V +
Sbjct: 242 YSNDEDVDAMGACVGSKGLRVQNIVNELGNEKIDIIKWNKLPEEYIANSLSPAKTLDVSI 301
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346
DE +VIV QLSLAIG+ GQNVRLA++LTGW IDI ++ +
Sbjct: 302 DEQNKCAKVIVDDNQLSLAIGKEGQNVRLAAKLTGWKIDIKSKSQ 346
>gi|314933445|ref|ZP_07840810.1| transcription termination factor NusA [Staphylococcus caprae C87]
gi|313653595|gb|EFS17352.1| transcription termination factor NusA [Staphylococcus caprae C87]
Length = 407
Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats.
Identities = 152/397 (38%), Positives = 233/397 (58%), Gaps = 4/397 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E
Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGSFRVIARKE 64
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER
Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y EF DK +I++G + RV++ V V+ G + V+ E E+ P +R+K Y+
Sbjct: 125 EILYDEFIDKEEDILTGVIDRVDHRYVYVNFGRIEAVLSEAERSPNESYIPNERIKVYVN 184
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S
Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSEKPD 244
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DE+
Sbjct: 245 IDAVGACVGSKGARVEAVVEELGGEKIDIVQWNEDPKVFVRNALSPSQVLEVIVDEENQS 304
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + E + + +N
Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAREAGVYPVIESEEVADEIVN 364
Query: 368 VDEIIAH----LLVAEGFADVEELACVKISEIASIEG 400
+ L E A + + E
Sbjct: 365 TGDEDVEFDDVNLEESNLTTAELAAETDEEKESDAEE 401
>gi|223044244|ref|ZP_03614281.1| transcription termination factor NusA [Staphylococcus capitis SK14]
gi|222442394|gb|EEE48502.1| transcription termination factor NusA [Staphylococcus capitis SK14]
Length = 407
Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats.
Identities = 153/397 (38%), Positives = 236/397 (59%), Gaps = 4/397 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E
Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGSFRVIARKE 64
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER
Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y EF DK +I++G + RV++ V V+LG + V+ E E+ P +R+K Y+
Sbjct: 125 EILYDEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNESYIPNERIKVYVN 184
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S ++
Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSDNAD 244
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DE+
Sbjct: 245 IDAVGACVGSKGARVEAVVEELGGEKIDIVQWNEDPKVFVRNALSPSQVLEVIVDEENQS 304
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + E + + +N
Sbjct: 305 TIVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAREAGVYPVIESEEVADEIVN 364
Query: 368 VDEIIAH----LLVAEGFADVEELACVKISEIASIEG 400
+ L E A + + E
Sbjct: 365 TGDEDVEFDDVNLEESNLTTAELAAETDEEKDSDAEE 401
>gi|254519187|ref|ZP_05131243.1| transcription elongation factor NusA [Clostridium sp. 7_2_43FAA]
gi|226912936|gb|EEH98137.1| transcription elongation factor NusA [Clostridium sp. 7_2_43FAA]
Length = 360
Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats.
Identities = 147/359 (40%), Positives = 232/359 (64%), Gaps = 4/359 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGT----MSDIRVEINPETGDIS 61
E + + +K I D++ S + D++ A + Y + +++V IN ETG+I
Sbjct: 2 NQEFIGALKEIVKDKGISEDLIFSTIEDALVAAYKKNYASPTTSAQNVKVSINRETGEIH 61
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
++ VVE+V + +ISL+ A++ P D+ +V + P +FGRVA Q AK V+ Q+
Sbjct: 62 VYAQKVVVEDVYDDVTEISLEEAKEVSPRYDLDDIVDLEVTPKNFGRVAAQLAKGVVTQR 121
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
+REAER+ Y E+K+ +II+GTV R + GNV V+LG + I +E I RE + ++
Sbjct: 122 IREAERNIVYSEYKELEYDIITGTVLRKDKGNVFVNLGRIETSIGPNEQIPREEYKFNEK 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
VK Y+ +V+ +G Q+L+SRTHP + +LF +EVPEIY G+V++K++SR+ GSR+K+AV
Sbjct: 182 VKLYVVEVKNGSKGAQILVSRTHPGLVKRLFELEVPEIYEGVVEIKSISREAGSRSKIAV 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
+S+D ++DP+GACVG +G+RVQ +V EL+ EKIDI+ WS + F+ +L PA V +VV
Sbjct: 242 YSNDENVDPMGACVGPKGTRVQNIVNELKGEKIDIIKWSKNPEEFIAASLSPAKVLEVVA 301
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
E+ +V+V QLSLAIG+ GQNVRLA++LT W IDI ++ + +++ E +
Sbjct: 302 CEETKSAKVVVDDNQLSLAIGKEGQNVRLAAKLTNWKIDIKSKSQSDALKEETVEETIE 360
>gi|160892797|ref|ZP_02073587.1| hypothetical protein CLOL250_00328 [Clostridium sp. L2-50]
gi|156865838|gb|EDO59269.1| hypothetical protein CLOL250_00328 [Clostridium sp. L2-50]
Length = 393
Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats.
Identities = 147/402 (36%), Positives = 232/402 (57%), Gaps = 15/402 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+++ + + EK+I +D++L + S++ A + + T +I V ++ ETG+ ++ E
Sbjct: 3 EIIEALNQLEKEKNISKDILLDAIERSLKAACKKDFDTDENIDVVMDRETGEFHVYAKKE 62
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEVE QISL+ A+ + D+G +++ + DFGR+A Q A+ VI+Q + E+ER
Sbjct: 63 VVEEVERPATQISLEKAKMMNSKYDLGDIINIEITTKDFGRIAAQRARNVIVQAINESER 122
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186
D Y F K +II+G V+R N+ V L ++ +++ E + E GDR+K Y+
Sbjct: 123 DAIYDHFYTKEKDIITGIVQRYVGNNINVSLDDKTEAILKESEMVPGEVYNRGDRIKLYV 182
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
+V++ RGP++ +SRTHP + +LF EV EI +G V++K+ R+ GSR+K+AV+S D
Sbjct: 183 TEVKKGSRGPKITVSRTHPDLVKRLFEKEVTEIADGTVEIKSSCREAGSRSKIAVYSHDE 242
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
++DPVGACVG+ GSRV VV +L EKIDI+ W + A F+ NAL P+ V V +D +
Sbjct: 243 NVDPVGACVGVNGSRVNNVVEDLNGEKIDIICWDENPAIFIKNALSPSEVIAVDVDLNEK 302
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
V+VP QLSLAIG++GQN RLA++LTG+ IDI +E + +
Sbjct: 303 SAFVVVPDYQLSLAIGKKGQNARLAAKLTGYKIDIKSESQAEEMGYFSEENDDYKEPEQ- 361
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408
E F +++++ E E D E E
Sbjct: 362 -----------EEAFDNIDDIVDGSYEESL--EQQDTEKVKE 390
>gi|256843341|ref|ZP_05548829.1| transcription termination factor NusA [Lactobacillus crispatus
125-2-CHN]
gi|256849840|ref|ZP_05555271.1| transcription termination-antitermination factor [Lactobacillus
crispatus MV-1A-US]
gi|262046914|ref|ZP_06019874.1| transcription termination factor NusA [Lactobacillus crispatus
MV-3A-US]
gi|256614761|gb|EEU19962.1| transcription termination factor NusA [Lactobacillus crispatus
125-2-CHN]
gi|256713329|gb|EEU28319.1| transcription termination-antitermination factor [Lactobacillus
crispatus MV-1A-US]
gi|260572896|gb|EEX29456.1| transcription termination factor NusA [Lactobacillus crispatus
MV-3A-US]
Length = 397
Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats.
Identities = 135/389 (34%), Positives = 216/389 (55%), Gaps = 2/389 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + K I +DV++ + ++ A + Y ++ V+ + G+ + +
Sbjct: 4 EMLEAFATLENTKGIKQDVIVDAIKAALVAAYKKNYNQAQNVEVDFDERKGNFKVMAVKT 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REAER
Sbjct: 64 VVDEVQDDRLEVSLKDALTINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
E+ E+++GTV+R + V V +GN + V+ + + E P D+++ +
Sbjct: 124 KHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAVMPHRDQMPNEVYNPQDQIRVLVT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +G Q+ +SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D +
Sbjct: 184 HVGSDSKGAQITVSRTAPDMVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSNDPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305
IDPVG CVG +G+RVQ VV EL E IDIV + D + F+ NAL PA V V DE+
Sbjct: 244 IDPVGTCVGQKGARVQNVVNELGGENIDIVKYEEDPSDFIANALNPAEVIAVQFGDDEEE 303
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
VIVP QLSLAIG++GQNVRLA++LT + IDI E E +K +
Sbjct: 304 KSALVIVPDYQLSLAIGKKGQNVRLAARLTSYKIDIRPESEVEFVDEKTNDTADAADSSE 363
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISE 394
+ + +D E
Sbjct: 364 TSENVESTDDAADVESSDDTTTVEDSSKE 392
>gi|293381214|ref|ZP_06627222.1| transcription termination factor NusA [Lactobacillus crispatus
214-1]
gi|290922254|gb|EFD99248.1| transcription termination factor NusA [Lactobacillus crispatus
214-1]
Length = 397
Score = 330 bits (847), Expect = 3e-88, Method: Composition-based stats.
Identities = 134/389 (34%), Positives = 216/389 (55%), Gaps = 2/389 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + K I +D+++ + ++ A + Y ++ V+ + G+ + +
Sbjct: 4 EMLEAFATLENTKGIKQDIIVDAIKAALVAAYKKNYNQAQNVEVDFDERKGNFKVMAVKT 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REAER
Sbjct: 64 VVDEVQDDRLEVSLKDALTINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
E+ E+++GTV+R + V V +GN + V+ + + E P D+++ +
Sbjct: 124 KHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAVMPHRDQMPNEVYNPQDQIRVLVT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +G Q+ +SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D +
Sbjct: 184 HVGSDSKGAQITVSRTAPDMVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSNDPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305
IDPVG CVG +G+RVQ VV EL E IDIV + D + F+ NAL PA V V DE+
Sbjct: 244 IDPVGTCVGQKGARVQNVVNELGGENIDIVKYEEDPSDFIANALNPAEVIAVQFGDDEEE 303
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
VIVP QLSLAIG++GQNVRLA++LT + IDI E E +K +
Sbjct: 304 KSALVIVPDYQLSLAIGKKGQNVRLAARLTSYKIDIRPESEVEFVDEKTNDTADAADSSE 363
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISE 394
+ + +D E
Sbjct: 364 TSENVESTDDAADVESSDDTTTVEDSSKE 392
>gi|301167102|emb|CBW26681.1| transcription pausing; L factor [Bacteriovorax marinus SJ]
Length = 467
Score = 330 bits (847), Expect = 3e-88, Method: Composition-based stats.
Identities = 171/427 (40%), Positives = 265/427 (62%), Gaps = 4/427 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
EL ++ + + E+ I++D+V+ + + AR YG + N DI +++
Sbjct: 4 ELGRVIETLGKERGIEKDIVVKAVEQAFLVTARKKYGIQGEYETRYNDGDDDIEIYQYKN 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +I+L A++ D ++IG + + +F RV VQ+A+Q+I QKVR+AER
Sbjct: 64 VVDEVRDPIVEITLADAKELDEEVEIGDQIGIKIENPNFSRVDVQTARQIIFQKVRDAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ + EFK K GE+++G +R E GN++VDLG +D V+ R E I EN +PGDR+++++
Sbjct: 124 EILFAEFKHKEGELVTGIARRYERGNIVVDLGKADAVLSRREVIPGENFKPGDRIQAFLT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
+V RGP++ LSRT P F+VKLF +EVPEI +G +++K+ +R+PG RAK+AV S D
Sbjct: 184 EVVMTNRGPEIRLSRTSPLFLVKLFELEVPEIQDGTIEIKSAAREPGQRAKIAVTSVDKD 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
IDPVGACVGM+GSRVQ VV EL+ EKIDIV W+ D TF AL P+ +T + +D +
Sbjct: 244 IDPVGACVGMKGSRVQNVVNELQGEKIDIVKWADDVDTFARAALAPSEITNIQIDHEDHT 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
++V+V ++QLSLAIGRRGQNVRLA+ L+G+ I+II++ + QK Q +
Sbjct: 304 MDVVVEEDQLSLAIGRRGQNVRLAAMLSGYKINIISKTKLQERIQKSVANLVQIS----S 359
Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427
+ + +A ++V G + ++A +E+A + D E A I ++ +I LQ
Sbjct: 360 ITDTLAQVMVQNGIQAIGDIAAADATELAELLEVDAEQATGIINDTIAAIDAGNIQLQAD 419
Query: 428 IRELGVS 434
E VS
Sbjct: 420 EEEELVS 426
>gi|257425320|ref|ZP_05601745.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus 55/2053]
gi|257427981|ref|ZP_05604379.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus 65-1322]
gi|257430614|ref|ZP_05606996.1| transcription termination-antitermination factor [Staphylococcus
aureus subsp. aureus 68-397]
gi|257433374|ref|ZP_05609732.1| transcription termination-antitermination factor [Staphylococcus
aureus subsp. aureus E1410]
gi|257436216|ref|ZP_05612263.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus M876]
gi|282914043|ref|ZP_06321830.1| N utilization substance protein A [Staphylococcus aureus subsp.
aureus M899]
gi|282924088|ref|ZP_06331764.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus C101]
gi|293501075|ref|ZP_06666926.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus 58-424]
gi|293510037|ref|ZP_06668745.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus M809]
gi|293526623|ref|ZP_06671308.1| N utilization substance protein A [Staphylococcus aureus subsp.
aureus M1015]
gi|257271777|gb|EEV03915.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus 55/2053]
gi|257274822|gb|EEV06309.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus 65-1322]
gi|257278742|gb|EEV09361.1| transcription termination-antitermination factor [Staphylococcus
aureus subsp. aureus 68-397]
gi|257281467|gb|EEV11604.1| transcription termination-antitermination factor [Staphylococcus
aureus subsp. aureus E1410]
gi|257284498|gb|EEV14618.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus M876]
gi|282314060|gb|EFB44452.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus C101]
gi|282322111|gb|EFB52435.1| N utilization substance protein A [Staphylococcus aureus subsp.
aureus M899]
gi|290920695|gb|EFD97758.1| N utilization substance protein A [Staphylococcus aureus subsp.
aureus M1015]
gi|291096080|gb|EFE26341.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus 58-424]
gi|291466981|gb|EFF09499.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus M809]
Length = 391
Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats.
Identities = 151/386 (39%), Positives = 233/386 (60%), Gaps = 1/386 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + + EK I R V++ + ++ A + Y + ++RVE+N + G + +
Sbjct: 5 ELLLATEYLEKEKKIPRAVLIDAIEAALITAYKKNYDSARNVRVELNMDQGTFKVIARKD 64
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER
Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ + EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+
Sbjct: 125 EILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++VFS ++
Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVFSENND 244
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DE
Sbjct: 245 IDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLEVIVDETNQS 304
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + E + + +
Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAHEAGIYPVVEAEKVTEEDVA 364
Query: 368 VDEIIAHLLVAEGFADVEELACVKIS 393
+++ E DV V+
Sbjct: 365 LEDADTTE-STEEVTDVSVETNVEKE 389
>gi|239636256|ref|ZP_04677258.1| transcription termination factor NusA [Staphylococcus warneri
L37603]
gi|239597611|gb|EEQ80106.1| transcription termination factor NusA [Staphylococcus warneri
L37603]
Length = 410
Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats.
Identities = 151/400 (37%), Positives = 237/400 (59%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E
Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGTFKVIARKE 64
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + ++ + A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER
Sbjct: 65 VVEEVFDDREEVDISTALVKNPAYEIGDIYEEDVTPQDFGRVGAQAAKQAVMQRLRDAER 124
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y EF DK +I++G + RV++ V V+LG + V+ E E+ P +R+K ++
Sbjct: 125 EILYDEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNESYIPNERIKVFVN 184
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SR+HP + +LF EVPEI++G V VK+V+R+ G R+K++V+S +
Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIFDGTVIVKSVAREAGDRSKISVYSDNPE 244
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DE+
Sbjct: 245 IDAVGACVGSKGARVEAVVEELGGEKIDIVQWNEDPKVFVRNALSPSQVLEVIVDEENQS 304
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + E + + +N
Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAREAGVYPVIESEEIADEVVN 364
Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV 407
+ A + ++E DE T
Sbjct: 365 TGDEDIEFEDVNLEESNLTTAELAAETDETLEDTDEVTTE 404
>gi|266625027|ref|ZP_06117962.1| transcription termination factor NusA [Clostridium hathewayi DSM
13479]
gi|288863082|gb|EFC95380.1| transcription termination factor NusA [Clostridium hathewayi DSM
13479]
Length = 401
Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats.
Identities = 146/345 (42%), Positives = 222/345 (64%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
ELL+ + + E +I +D +L + +S+ A ++ +G +++V +N ET D S++
Sbjct: 2 NKELLEALNILEKENNISKDTLLEAIENSLLTACKNHFGKADNVKVSMNHETCDFSVYAE 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
EVVEEVE+ QISL A+ DP DIG +V P+ FGR+A Q+AK VI+QK+RE
Sbjct: 62 KEVVEEVEDPLLQISLAEAKMTDPKYDIGDIVQCPIDSKKFGRIATQNAKNVILQKIREE 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
R Y ++ + E+++G V+R NV ++LG D ++ E + E + +R+K Y
Sbjct: 122 GRKALYNDWYCQEKEVVTGIVQRYLGKNVSINLGKVDAILNETEMVKGEVFKATERIKVY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ +V+ +GP++ +SRTHP + +LF EV E+ +G V++KA++R+ GSR K+AV S+D
Sbjct: 182 VLEVKDTPKGPRISVSRTHPDLVKRLFESEVAEVKDGTVEIKAIAREAGSRTKIAVKSND 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
++DPVGACVG+ G+RV ++V ELR EKIDI+ W + A + NAL PA V VV DE+
Sbjct: 242 QNVDPVGACVGLNGARVNSIVNELRGEKIDIINWDDNPAYLIENALSPAKVICVVADEES 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350
+VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E +
Sbjct: 302 REAQVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQAREM 346
>gi|295698482|ref|YP_003603137.1| transcription termination factor NusA [Candidatus Riesia
pediculicola USDA]
gi|291156972|gb|ADD79417.1| transcription termination factor NusA [Candidatus Riesia
pediculicola USDA]
Length = 390
Score = 330 bits (846), Expect = 4e-88, Method: Composition-based stats.
Identities = 145/331 (43%), Positives = 224/331 (67%), Gaps = 2/331 (0%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + + V+ EKSI R+ + + +I A + D+RV IN +TGD FR
Sbjct: 2 NKEILTVVELVSNEKSIPREKIFEALEIAIATATKKKSVQNIDVRVSINQKTGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV+EV T +I+L+ A+ +P +++G + + + F R+A Q+AKQVI QKVREA
Sbjct: 62 WLVVKEVVQPTLEITLEAAQFENPRVELGHYLEYRIRSIQFDRIATQTAKQVIFQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184
ERD +F ++ GE++SG VK+V + I D+G N + ++ +++ + REN R DR+K
Sbjct: 122 ERDIVVQQFSERSGEMLSGIVKKVNKDSTIFDIGQNIEAIVSKEDMLPRENFRINDRIKG 181
Query: 185 YIYDVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+YD+R++ R PQ+++SRT + +++LF +EVPEIY GIV++K + RDPG+R+K+AV +
Sbjct: 182 VLYDIRQDSRGRPQLIVSRTSKRMLIELFRLEVPEIYEGIVEIKIIVRDPGTRSKMAVIT 241
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
+D IDPVGACVGMRGSRVQ++ EL E+ID+++W+ + A F INA+ PA V+ +++DE
Sbjct: 242 NDKRIDPVGACVGMRGSRVQSISNELCGERIDVILWNENLARFTINAMAPAEVSSIIVDE 301
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQL 334
+++ V + L+ AIGR GQNVRLASQL
Sbjct: 302 KKHSVDIAVEERNLAQAIGRNGQNVRLASQL 332
>gi|315924374|ref|ZP_07920596.1| transcription termination factor NusA [Pseudoramibacter
alactolyticus ATCC 23263]
gi|315622253|gb|EFV02212.1| transcription termination factor NusA [Pseudoramibacter
alactolyticus ATCC 23263]
Length = 411
Score = 330 bits (845), Expect = 4e-88, Method: Composition-based stats.
Identities = 140/400 (35%), Positives = 235/400 (58%), Gaps = 6/400 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E L D + EK I+++ ++ + SI++A R YG+ ++ V + +G+I ++
Sbjct: 2 NAEFLAALDVLEKEKGINKEELIEAIESSIEQAYRKNYGSEQNVEVRFDRSSGEIQVYTT 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV+EV + + +L A D + +IG ++ + P FGR+A Q+AKQ+I QK++E
Sbjct: 62 WLVVDEVMDPDKEKTLAEALAIDEAAEIGQMIEKKIAPRHFGRIAAQNAKQMIYQKIKEQ 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y F ++ E+++G + V+ V VD+G++ G++ E I E+ + G R++ Y
Sbjct: 122 ERKNIYDTFIERQDEVVTGKIDHVDRRMVYVDIGDATGLMPLSEQIPTEHYKAGQRIRVY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I V+ +GP++++SRTH + +L EVPEIY+G+V V++++R+ GSR+K+AV S+D
Sbjct: 182 ITSVKETSKGPEIMVSRTHSGLLKRLLEEEVPEIYDGVVDVESIAREAGSRSKIAVKSND 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
S++DPVG+CVG RG+R+Q ++ EL EKID++ ++ D F+ NAL PA V +V+ +
Sbjct: 242 STVDPVGSCVGYRGTRIQNIIDELGGEKIDVIRYNEDIHEFIANALSPANVIEVLANPRD 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
+ +V Q SLAIG+ GQNVRLA +LTGW IDI + + ++ N R +F
Sbjct: 302 KQAYAVVDDFQFSLAIGKEGQNVRLAVRLTGWKIDIKSASDFQAMLDENPNLREEFS--- 358
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEET 405
E LV + +++E+ + D ET
Sbjct: 359 ---QEKETEKLVDDILQEMDEVLSDDAGAGLLDDDSDTET 395
>gi|153954053|ref|YP_001394818.1| transcription elongation factor NusA [Clostridium kluyveri DSM 555]
gi|219854666|ref|YP_002471788.1| hypothetical protein CKR_1323 [Clostridium kluyveri NBRC 12016]
gi|146346934|gb|EDK33470.1| NusA [Clostridium kluyveri DSM 555]
gi|219568390|dbj|BAH06374.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 355
Score = 330 bits (845), Expect = 5e-88, Method: Composition-based stats.
Identities = 139/352 (39%), Positives = 230/352 (65%), Gaps = 4/352 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDIS 61
E ++ + EK I D++ + + D++ A + Y + +++V +N E G+I
Sbjct: 2 NQEFIEALKEIVKEKGISEDLLFTTIEDALVAAYKKNYIGHGISNQNVKVTMNRENGEIH 61
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
++ +V+ V + +ISL+ A++ D + D+G +V+ + P FGRVA Q+AKQV+IQ+
Sbjct: 62 VYSQKSIVDNVVDDVSEISLEDAKEIDSNYDMGDIVNIEVTPRKFGRVAAQAAKQVVIQR 121
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
++E ER Y +F +K +II+GTV R + N++V+LG ++ ++ +E I E D+
Sbjct: 122 IKEEERRIIYNDFVEKEDDIITGTVIRKDKNNILVNLGKTEAILGPNEQIPGEKYNFNDK 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K YI +V+ +G Q+++SRTHP + +LF +EVPE+++G V +K+++R+ GSR K+AV
Sbjct: 182 LKLYIVEVKNTTKGAQIVISRTHPGLIKRLFELEVPEVFDGTVDIKSIAREAGSRTKIAV 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+D ++DP+GACVG +G RVQ +V EL+ EKIDI+ WS ++ NAL PA V V L
Sbjct: 242 HSNDENVDPMGACVGPKGVRVQNIVNELKSEKIDIIKWSKLPEEYIANALSPAKVLDVTL 301
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353
DE++ +++V QLSLAIG+ GQNVRLA++LTGW IDI ++ + + +K
Sbjct: 302 DEEIKFAQIVVDDSQLSLAIGKEGQNVRLAAKLTGWKIDIKSKSQSDVEDEK 353
>gi|283470481|emb|CAQ49692.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus ST398]
Length = 391
Score = 330 bits (845), Expect = 5e-88, Method: Composition-based stats.
Identities = 151/386 (39%), Positives = 234/386 (60%), Gaps = 1/386 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + + EK I R V++ + ++ A + Y + ++RVE+N + G + +
Sbjct: 5 ELLLATEYLEKEKKIPRAVLIDAIEAALITAYKKNYDSARNVRVELNMDQGTFKVIARKD 64
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER
Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ + EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+
Sbjct: 125 EILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++VFS ++
Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVFSENND 244
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DE
Sbjct: 245 IDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLEVIVDETNQS 304
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + E + + +
Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPVVEAEKVTEEDVA 364
Query: 368 VDEIIAHLLVAEGFADVEELACVKIS 393
++++ E DV V+
Sbjct: 365 LEDVDTTE-STEEVTDVSVETNVEKE 389
>gi|320144367|gb|EFW36133.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus MRSA177]
Length = 391
Score = 330 bits (845), Expect = 5e-88, Method: Composition-based stats.
Identities = 148/372 (39%), Positives = 229/372 (61%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + + EK I R V++ + ++ A + Y + ++RVE+N + G + +
Sbjct: 5 ELLLATEYLEKEKKIPRAVLIDAIEAALITAYKKNYDSARNVRVELNMDQGTFKVIARKD 64
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER
Sbjct: 65 VVEEVFDDRVEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ + EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+
Sbjct: 125 EILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++VFS ++
Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVFSENND 244
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DE
Sbjct: 245 IDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLEVIVDETNQS 304
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + E + + +
Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPVVEAEKVTEEDVA 364
Query: 368 VDEIIAHLLVAE 379
+++ E
Sbjct: 365 LEDADTTESTEE 376
>gi|49483429|ref|YP_040653.1| transcription elongation factor NusA [Staphylococcus aureus subsp.
aureus MRSA252]
gi|82750867|ref|YP_416608.1| transcription elongation factor NusA [Staphylococcus aureus RF122]
gi|258423893|ref|ZP_05686778.1| transcription termination factor NusA [Staphylococcus aureus A9635]
gi|282903821|ref|ZP_06311709.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus C160]
gi|282905584|ref|ZP_06313439.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus Btn1260]
gi|282908559|ref|ZP_06316389.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus WW2703/97]
gi|282910838|ref|ZP_06318641.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus WBG10049]
gi|282918965|ref|ZP_06326700.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus C427]
gi|283958009|ref|ZP_06375460.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus A017934/97]
gi|295427753|ref|ZP_06820385.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297591289|ref|ZP_06949927.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus MN8]
gi|49241558|emb|CAG40244.1| putative N utilization substance protein A [Staphylococcus aureus
subsp. aureus MRSA252]
gi|82656398|emb|CAI80817.1| transcription termination-antitermination factor [Staphylococcus
aureus RF122]
gi|257845922|gb|EEV69951.1| transcription termination factor NusA [Staphylococcus aureus A9635]
gi|282316775|gb|EFB47149.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus C427]
gi|282325443|gb|EFB55752.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus WBG10049]
gi|282327621|gb|EFB57904.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus WW2703/97]
gi|282330876|gb|EFB60390.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus Btn1260]
gi|282595439|gb|EFC00403.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus C160]
gi|283790158|gb|EFC28975.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus A017934/97]
gi|295128111|gb|EFG57745.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297576175|gb|EFH94891.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus MN8]
gi|302332872|gb|ADL23065.1| transcription termination-antitermination factor [Staphylococcus
aureus subsp. aureus JKD6159]
gi|312438354|gb|ADQ77425.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus TCH60]
gi|315194154|gb|EFU24547.1| transcription elongation factor NusA [Staphylococcus aureus subsp.
aureus CGS00]
gi|323441046|gb|EGA98753.1| transcription elongation factor NusA [Staphylococcus aureus O11]
gi|323443915|gb|EGB01526.1| transcription elongation factor NusA [Staphylococcus aureus O46]
Length = 391
Score = 330 bits (845), Expect = 5e-88, Method: Composition-based stats.
Identities = 151/386 (39%), Positives = 233/386 (60%), Gaps = 1/386 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + + EK I R V++ + ++ A + Y + ++RVE+N + G + +
Sbjct: 5 ELLLATEYLEKEKKIPRAVLIDAIEAALITAYKKNYDSARNVRVELNMDQGTFKVIARKD 64
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER
Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ + EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+
Sbjct: 125 EILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++VFS ++
Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVFSENND 244
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DE
Sbjct: 245 IDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLEVIVDETNQS 304
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + E + + +
Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPVVEAEKVTEEDVA 364
Query: 368 VDEIIAHLLVAEGFADVEELACVKIS 393
+++ E DV V+
Sbjct: 365 LEDADTTE-STEEVTDVSVETNVEKE 389
>gi|282916526|ref|ZP_06324284.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus D139]
gi|283770330|ref|ZP_06343222.1| N utilization substance protein A [Staphylococcus aureus subsp.
aureus H19]
gi|282319013|gb|EFB49365.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus D139]
gi|283460477|gb|EFC07567.1| N utilization substance protein A [Staphylococcus aureus subsp.
aureus H19]
Length = 391
Score = 329 bits (844), Expect = 6e-88, Method: Composition-based stats.
Identities = 151/386 (39%), Positives = 233/386 (60%), Gaps = 1/386 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + + EK I R V++ + ++ A + Y + ++RVE+N + G + +
Sbjct: 5 ELLLATEYLEKEKKIPRAVLIDAIEAALITAYKKNYDSARNVRVELNMDQGTFKVIARKD 64
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER
Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ + EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+
Sbjct: 125 EILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++VFS ++
Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVFSENND 244
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DE
Sbjct: 245 IDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLEVIVDETNQS 304
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + E + + +
Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPVVEAEKATEEDVA 364
Query: 368 VDEIIAHLLVAEGFADVEELACVKIS 393
+++ E DV V+
Sbjct: 365 LEDADTTE-STEEVTDVSVETNVEKE 389
>gi|282850815|ref|ZP_06260189.1| transcription termination factor NusA [Lactobacillus gasseri 224-1]
gi|282557767|gb|EFB63355.1| transcription termination factor NusA [Lactobacillus gasseri 224-1]
Length = 406
Score = 329 bits (844), Expect = 6e-88, Method: Composition-based stats.
Identities = 137/403 (33%), Positives = 226/403 (56%), Gaps = 2/403 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+++ + EK I +++++ + ++ A + Y ++ V + + G+ + +
Sbjct: 4 EMVEAFATLEKEKGIKQEIIVDAIKAALVAAYKKNYNQAQNVEVVFDEKKGNFKVNAIKT 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV++ ++SLK A + + + ++G + + P DFGR+A Q+AKQVI+Q++REAER
Sbjct: 64 VVDEVQDSRLEVSLKDALEINRAYEVGDEIRFEVTPKDFGRLAAQTAKQVIMQRLREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ E+ EI++GTV+R + V V +GN + V+ ++ + EN P D+V+ +
Sbjct: 124 EHIISEYSQYKDEIVTGTVERRDNRFVYVKIGNVEAVMPHNDQLPGENYNPQDKVRVLVT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +G Q+ +SRT P + +LF EVPE+Y+G V++ +++R+ G R K+AV S+D
Sbjct: 184 RVGSDSKGAQITVSRTAPDLVKRLFEQEVPEVYDGTVEIVSIAREAGDRTKIAVKSNDPD 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305
ID VG VG +G+RVQ +V EL E ID+V + + + F+ NAL PA V V D+D
Sbjct: 244 IDSVGTLVGPKGTRVQNIVNELGGENIDVVKYEENPSDFIANALNPAEVIAVQFSGDDDD 303
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
VIVP QLSLAIG+RGQNVRLA++L G+ IDI E + + + T +
Sbjct: 304 KNALVIVPDYQLSLAIGKRGQNVRLAARLAGYKIDIKPESQVEFVDSEGDDVETDQDIDD 363
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408
NV A AE + ++ S D + E
Sbjct: 364 SNVSNEEATESTAEQLEEDSSEDFPNGEDVDSALDDDADKDEE 406
>gi|253682577|ref|ZP_04863374.1| transcription termination factor NusA [Clostridium botulinum D str.
1873]
gi|253562289|gb|EES91741.1| transcription termination factor NusA [Clostridium botulinum D str.
1873]
Length = 348
Score = 329 bits (844), Expect = 6e-88, Method: Composition-based stats.
Identities = 144/347 (41%), Positives = 223/347 (64%), Gaps = 5/347 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDIS 61
E ++ + EK I+ ++ + D++ A + Y G +++V I+ E G+I
Sbjct: 2 NAEFIEALREIVKEKGIEEQLLFDTVEDALVSAYKKNYAKVGGNSQNVKVTIDRENGEIH 61
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
++ + E+ +ISL+ AR+ +P ++G +V + P FGR+A Q+AKQV+IQ+
Sbjct: 62 VYAQKRIEEDP-LTINEISLEEAREINPKYEMGDIVDLEVTPKSFGRIAAQTAKQVVIQR 120
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
++EAER Y EF K +II+GTV R + GNV VDL ++ V+ +E I E D+
Sbjct: 121 IKEAERKVIYNEFIAKEFDIITGTVIRKDKGNVFVDLEKTEAVLGPNEQIPSEEYNFNDK 180
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K YI +V+ +GPQV++SRTHP + +LF +EVPEIY G+V++K+++R+ GSR K+AV
Sbjct: 181 LKLYIVEVKNTTKGPQVVVSRTHPGLVKRLFELEVPEIYEGVVEIKSIAREAGSRTKIAV 240
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
+S+D ++D GACVG +G RVQ +V EL++EKIDI+ W D ++ NAL PA V V +
Sbjct: 241 YSNDENVDATGACVGPKGMRVQNIVNELKNEKIDIIKWDKDPEKYIANALSPARVVNVEI 300
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
DE+ +++V QLSLAIG+ GQNVRLA++LTGW IDI +E +
Sbjct: 301 DEENKSAKIVVEDGQLSLAIGKEGQNVRLAAKLTGWKIDIKSESQVE 347
>gi|302191441|ref|ZP_07267695.1| transcription elongation factor NusA [Lactobacillus iners AB-1]
Length = 362
Score = 329 bits (844), Expect = 6e-88, Method: Composition-based stats.
Identities = 132/343 (38%), Positives = 209/343 (60%), Gaps = 2/343 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
EL++ A+ +K I ++ ++ + ++ A + Y ++ V + G + +
Sbjct: 4 ELIKSFTALEEQKGIKQEEIVDAIKAALIAAYKKNYNQAQNVEVIFDENKGKFIVQAVKT 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV++ Q+SLK A + + + ++G + + P +FGR+A Q+AKQVI+Q++REAER
Sbjct: 64 VVDEVQDDRQQVSLKDALEINRAYEVGDEIRFEVTPQNFGRLAAQTAKQVIMQRLREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
E+ E+I+GTV+RV+ V + +GN + V+ ++ + E +P DR+K +
Sbjct: 124 AHIIEEYSQYQNELITGTVERVDNRFVYIKIGNVEAVMPHNDQMPGEVYKPQDRIKVLVT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +G Q+ +SRT P + +LF EVPE+YNG V++ +++R+ G R K+AV SSD +
Sbjct: 184 KVGSDAKGTQITVSRTAPGLVKRLFEQEVPEVYNGTVEIISIAREAGDRTKIAVKSSDPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE--DV 305
IDPVG VG +GSRVQ +V EL E ID+V + D + ++ NAL PA V V E D
Sbjct: 244 IDPVGTLVGPKGSRVQNIVNELSGENIDVVKYEEDPSDYIANALNPAEVIAVQFGEANDD 303
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
VIVP QLSLAIG++GQNVRLA++LT + IDI E +
Sbjct: 304 KSALVIVPDYQLSLAIGKKGQNVRLAARLTEYKIDIKPESQVE 346
>gi|289550942|ref|YP_003471846.1| Transcription termination protein NusA [Staphylococcus lugdunensis
HKU09-01]
gi|289180474|gb|ADC87719.1| Transcription termination protein NusA [Staphylococcus lugdunensis
HKU09-01]
Length = 387
Score = 329 bits (844), Expect = 6e-88, Method: Composition-based stats.
Identities = 148/369 (40%), Positives = 224/369 (60%), Gaps = 1/369 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G +
Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGTFKVVARKS 64
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV ++ ++ L A ++P+ ++G + + + P DFGRV Q+AKQ ++Q++R+AER
Sbjct: 65 VVEEVSDHRDEVDLSTALVKNPAYEVGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+
Sbjct: 125 EILYDEFVDKEDDILTGLIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S +
Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSENPD 244
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
ID VGACVG +G+RV+AVV EL EKIDIV W D FV NAL P+ V +V++DE
Sbjct: 245 IDAVGACVGAKGARVEAVVEELGGEKIDIVQWDEDPKVFVKNALSPSQVLEVIVDESNQS 304
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED-SINRQKDFNERTQFFMQAI 366
VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + I
Sbjct: 305 TVVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDACEAGIYPIVEAENHADEAEI 364
Query: 367 NVDEIIAHL 375
+D+
Sbjct: 365 EIDDESIET 373
>gi|46578925|ref|YP_009733.1| transcription elongation factor NusA [Desulfovibrio vulgaris str.
Hildenborough]
gi|120603474|ref|YP_967874.1| transcription elongation factor NusA [Desulfovibrio vulgaris DP4]
gi|46448337|gb|AAS94992.1| N utilization substance protein A [Desulfovibrio vulgaris str.
Hildenborough]
gi|120563703|gb|ABM29447.1| NusA antitermination factor [Desulfovibrio vulgaris DP4]
gi|311232783|gb|ADP85637.1| transcription termination factor NusA [Desulfovibrio vulgaris RCH1]
Length = 428
Score = 329 bits (844), Expect = 6e-88, Method: Composition-based stats.
Identities = 178/410 (43%), Positives = 269/410 (65%), Gaps = 9/410 (2%)
Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66
+EL + D ++ +K ++RD++++ + ++++ + YG D+ V N E+G+I +++
Sbjct: 3 MELKKAIDQISKDKGLERDMLVATLEEAVRTSVVRKYGDDIDVEVSYNDESGEIEVYQFK 62
Query: 67 EVV----EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
VV +E E+ I L+ AR DPS+ I + L D GR+A QSAKQVIIQ++
Sbjct: 63 IVVAELDDEDEDGNAHIVLEEARKHDPSVQIDDEMGFRLKVEDLGRIAAQSAKQVIIQRM 122
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182
R+AE++ Y EFKD+ GEIISG ++R + I++LG ++ ++ ++E I RE+ + GDRV
Sbjct: 123 RDAEQELIYDEFKDRRGEIISGIIQRRDKAGWIINLGRTEALLPKEEQIPREHYKRGDRV 182
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
++ I +VR+E RGPQV++SR+H +M LF EVPE+ +G VQ+ V+RDPGSRAK+AV
Sbjct: 183 QAIIIEVRKEGRGPQVIVSRSHRDYMAALFRREVPEVDDGTVQIMGVARDPGSRAKVAVL 242
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
S + +DPVGACVG+RGSR+Q VV ELR E+IDIVVWSP+ AT+ NAL PA+++++V+D
Sbjct: 243 SRERDVDPVGACVGIRGSRIQNVVQELRGERIDIVVWSPEIATYARNALSPAVISRIVVD 302
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
E+ +EVIVP +QL+ AIGR+GQNV+LA++L GW IDI TE R + N +
Sbjct: 303 EEENLLEVIVPDDQLTNAIGRKGQNVKLAAKLLGWKIDIYTET-----RYNEANAIGRGL 357
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412
Q +V EI V GF +E L E+AS G D+ +++
Sbjct: 358 EQIASVAEISIEQFVTAGFQSIERLREASDEELASGLGIDDNRIADLRAA 407
>gi|330685665|gb|EGG97306.1| transcription termination factor NusA [Staphylococcus epidermidis
VCU121]
Length = 410
Score = 329 bits (844), Expect = 7e-88, Method: Composition-based stats.
Identities = 150/400 (37%), Positives = 238/400 (59%), Gaps = 3/400 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E
Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGTFKVIARKE 64
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVE+V + ++ + A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER
Sbjct: 65 VVEKVFDDREEVDISTALVKNPAYEIGDIYEEDVTPQDFGRVGAQAAKQAVMQRLRDAER 124
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y EF DK +I++G + RV++ V V+LG + V+ E E+ P +R+K ++
Sbjct: 125 EILYDEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNESYIPNERIKVFVN 184
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SR+HP + +LF EVPEI++G V VK+V+R+ G R+K++V+S +
Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIFDGTVIVKSVAREAGDRSKISVYSENPE 244
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DE+
Sbjct: 245 IDAVGACVGSKGARVEAVVEELGGEKIDIVQWNEDPKVFVRNALSPSQVLEVIVDEENQS 304
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ---FFMQ 364
V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + E + +
Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESDARDAGVYPVIESEEIADEVVN 364
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404
+ + D + + E ELA + + E
Sbjct: 365 SGDEDIEFDDVNLEESNLTTAELAAETDESLEETDEVTTE 404
>gi|331269630|ref|YP_004396122.1| NusA antitermination factor [Clostridium botulinum BKT015925]
gi|329126180|gb|AEB76125.1| NusA antitermination factor [Clostridium botulinum BKT015925]
Length = 348
Score = 329 bits (844), Expect = 7e-88, Method: Composition-based stats.
Identities = 145/347 (41%), Positives = 224/347 (64%), Gaps = 5/347 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDIS 61
E ++ + EK I+ ++ + D++ A + Y G +++V I+ E G+I
Sbjct: 2 NAEFIEALREIVKEKGIEEQLLFDTVEDALVSAYKKNYAKVGGNSQNVKVTIDRENGEIH 61
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
++ + E+ +ISL+ AR+ +P ++G +V + P FGR+A Q+AKQV+IQ+
Sbjct: 62 VYAQKRIEEDP-LTINEISLEEAREFNPKYEMGDIVDLEVTPKSFGRIAAQTAKQVVIQR 120
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
++EAER Y EF K +II+GTV R + GNV VDL ++ V+ +E I E D+
Sbjct: 121 IKEAERKVIYNEFIAKEFDIITGTVIRKDKGNVFVDLEKTEAVLGPNEQIPSEEYNFNDK 180
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K YI +V+ +GPQV++SRTHP + +LF +EVPEIY G+V++K+++R+ GSR K+AV
Sbjct: 181 LKLYIVEVKNTTKGPQVVVSRTHPGLVKRLFELEVPEIYEGVVEIKSIAREAGSRTKIAV 240
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
+S+D ++D GACVG +G RVQ +VTEL++EKIDI+ W D ++ NAL PA V V +
Sbjct: 241 YSNDENVDATGACVGPKGMRVQNIVTELKNEKIDIIKWDKDPEKYIANALSPARVVSVEI 300
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
DE+ +++V QLSLAIG+ GQNVRLA++LTGW IDI +E +
Sbjct: 301 DEENKSAKIVVEDGQLSLAIGKEGQNVRLAAKLTGWKIDIKSESQVE 347
>gi|313680244|ref|YP_004057983.1| nusa antitermination factor [Oceanithermus profundus DSM 14977]
gi|313152959|gb|ADR36810.1| NusA antitermination factor [Oceanithermus profundus DSM 14977]
Length = 401
Score = 329 bits (844), Expect = 7e-88, Method: Composition-based stats.
Identities = 152/374 (40%), Positives = 224/374 (59%), Gaps = 10/374 (2%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD---------IRVEINPE 56
E ++ VA E+ + D ++ +++ KA G + V + P
Sbjct: 2 NREFVEALQHVALERGVSTDELIEAFEEALAKAYLRHKGFKPKEVEEGLGPLVEVHLEPS 61
Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116
TG+I + + VVEEVEN I L+ A+ DP + +G + P+ P +F R+AVQ+AKQ
Sbjct: 62 TGEIEVLEIRRVVEEVENPDRDIPLEEAKKYDPEVQVGEEMEFPVDPDEFSRIAVQAAKQ 121
Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISREN 175
++ Q+++EAER+R Y E+KD+ GEII+G V RV+ GNV VDLG + ++ E I E
Sbjct: 122 ILTQRLKEAERNRVYEEYKDREGEIITGQVTRVDNRGNVYVDLGRGEALMPPREQIPGER 181
Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235
PG RVK Y+ +VRR +GP +++SR H + + L EVPEI G V++K V+R+PGS
Sbjct: 182 YHPGQRVKVYLKEVRRSSKGPSLIVSRAHEELLKYLMRQEVPEIAEGTVEIKVVAREPGS 241
Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295
R+K+AV S + ++DP+GAC+G +G R+QAV EL EKID++ WS + F+ NAL PA
Sbjct: 242 RSKVAVVSHNPNVDPIGACIGHKGQRIQAVSAELGREKIDVIPWSSNPREFIRNALSPAT 301
Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355
V + +D + GR V V K+Q S+AIGR GQNVRLAS+LTG+ ID EE S +
Sbjct: 302 VGNIEIDTEAGRAVVSVGKDQHSVAIGRGGQNVRLASKLTGFEIDFKEAEEVSDLDEALL 361
Query: 356 NERTQFFMQAINVD 369
+ A++
Sbjct: 362 RASEKTEEVAVDAG 375
>gi|309804404|ref|ZP_07698478.1| transcription termination factor NusA [Lactobacillus iners LactinV
11V1-d]
gi|309807206|ref|ZP_07701180.1| transcription termination factor NusA [Lactobacillus iners LactinV
03V1-b]
gi|309808384|ref|ZP_07702285.1| transcription termination factor NusA [Lactobacillus iners LactinV
01V1-a]
gi|309809697|ref|ZP_07703552.1| transcription termination factor NusA [Lactobacillus iners SPIN
2503V10-D]
gi|312871846|ref|ZP_07731931.1| transcription termination factor NusA [Lactobacillus iners LEAF
3008A-a]
gi|312872033|ref|ZP_07732111.1| transcription termination factor NusA [Lactobacillus iners LEAF
2062A-h1]
gi|312873348|ref|ZP_07733401.1| transcription termination factor NusA [Lactobacillus iners LEAF
2052A-d]
gi|312875707|ref|ZP_07735704.1| transcription termination factor NusA [Lactobacillus iners LEAF
2053A-b]
gi|325912466|ref|ZP_08174859.1| transcription termination factor NusA [Lactobacillus iners UPII
143-D]
gi|325912547|ref|ZP_08174934.1| transcription termination factor NusA [Lactobacillus iners UPII
60-B]
gi|329919859|ref|ZP_08276797.1| transcription termination factor NusA [Lactobacillus iners SPIN
1401G]
gi|308163519|gb|EFO65792.1| transcription termination factor NusA [Lactobacillus iners LactinV
11V1-d]
gi|308166427|gb|EFO68632.1| transcription termination factor NusA [Lactobacillus iners LactinV
03V1-b]
gi|308168369|gb|EFO70486.1| transcription termination factor NusA [Lactobacillus iners LactinV
01V1-a]
gi|308169977|gb|EFO72015.1| transcription termination factor NusA [Lactobacillus iners SPIN
2503V10-D]
gi|311088772|gb|EFQ47219.1| transcription termination factor NusA [Lactobacillus iners LEAF
2053A-b]
gi|311091138|gb|EFQ49529.1| transcription termination factor NusA [Lactobacillus iners LEAF
2052A-d]
gi|311092446|gb|EFQ50812.1| transcription termination factor NusA [Lactobacillus iners LEAF
2062A-h1]
gi|311092627|gb|EFQ50986.1| transcription termination factor NusA [Lactobacillus iners LEAF
3008A-a]
gi|325475713|gb|EGC78886.1| transcription termination factor NusA [Lactobacillus iners UPII
143-D]
gi|325478156|gb|EGC81281.1| transcription termination factor NusA [Lactobacillus iners UPII
60-B]
gi|328936949|gb|EGG33379.1| transcription termination factor NusA [Lactobacillus iners SPIN
1401G]
Length = 362
Score = 329 bits (843), Expect = 8e-88, Method: Composition-based stats.
Identities = 132/343 (38%), Positives = 209/343 (60%), Gaps = 2/343 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
EL++ A+ +K I ++ ++ + ++ A + Y ++ V + G + +
Sbjct: 4 ELIKSFTALEEQKGIKQEEIVDAIKAALIAAYKKNYNQAQNVEVIFDENKGKFIVQAVKT 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV++ Q+SLK A + + + ++G + + P +FGR+A Q+AKQVI+Q++REAER
Sbjct: 64 VVDEVQDDRQQVSLKDALEINRAYEVGDEIRFEVTPQNFGRLAAQTAKQVIMQRLREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
E+ E+I+GTV+RV+ V + +GN + V+ ++ + E +P DR+K +
Sbjct: 124 AHIIEEYSQYQNELITGTVERVDNRFVYIKIGNVEAVMPHNDQMPGEVYKPQDRIKVLVT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +G Q+ +SRT P + +LF EVPE+YNG V++ +++R+ G R K+AV SSD +
Sbjct: 184 KVGSDAKGTQITVSRTAPGLVKRLFEQEVPEVYNGTVEIISIAREAGDRTKIAVKSSDPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE--DV 305
IDPVG VG +GSRVQ +V EL E ID+V + D + ++ NAL PA V V E D
Sbjct: 244 IDPVGTLVGPKGSRVQNIVNELSGENIDVVKYEEDPSDYIANALNPAEVIAVQFGEANDD 303
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
VIVP QLSLAIG++GQNVRLA++LT + IDI E +
Sbjct: 304 KSALVIVPDYQLSLAIGKKGQNVRLAARLTEYKIDIKPESQVE 346
>gi|57651836|ref|YP_186142.1| transcription elongation factor NusA [Staphylococcus aureus subsp.
aureus COL]
gi|87160356|ref|YP_493856.1| transcription elongation factor NusA [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|88194976|ref|YP_499776.1| transcription elongation factor NusA [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|151221388|ref|YP_001332210.1| transcription elongation factor NusA [Staphylococcus aureus subsp.
aureus str. Newman]
gi|161509432|ref|YP_001575091.1| transcription elongation factor NusA [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|221142500|ref|ZP_03566993.1| transcription elongation factor NusA [Staphylococcus aureus subsp.
aureus str. JKD6009]
gi|258452565|ref|ZP_05700571.1| transcription termination-antitermination factor [Staphylococcus
aureus A5948]
gi|262048158|ref|ZP_06021045.1| transcription elongation factor NusA [Staphylococcus aureus D30]
gi|262051328|ref|ZP_06023551.1| transcription elongation factor NusA [Staphylococcus aureus
930918-3]
gi|282920510|ref|ZP_06328231.1| transcription termination factor NusA [Staphylococcus aureus A9765]
gi|284024259|ref|ZP_06378657.1| transcription elongation factor NusA [Staphylococcus aureus subsp.
aureus 132]
gi|294848262|ref|ZP_06789009.1| transcription termination factor NusA [Staphylococcus aureus A9754]
gi|304381170|ref|ZP_07363823.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|57286022|gb|AAW38116.1| N utilization substance protein A, putative [Staphylococcus aureus
subsp. aureus COL]
gi|87126330|gb|ABD20844.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|87202534|gb|ABD30344.1| transcription termination-antitermination factor, putative
[Staphylococcus aureus subsp. aureus NCTC 8325]
gi|150374188|dbj|BAF67448.1| transcription termination-antitermination factor [Staphylococcus
aureus subsp. aureus str. Newman]
gi|160368241|gb|ABX29212.1| N utilization substance A [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|257859783|gb|EEV82625.1| transcription termination-antitermination factor [Staphylococcus
aureus A5948]
gi|259160703|gb|EEW45724.1| transcription elongation factor NusA [Staphylococcus aureus
930918-3]
gi|259163724|gb|EEW48279.1| transcription elongation factor NusA [Staphylococcus aureus D30]
gi|269940757|emb|CBI49139.1| putative N utilization substance protein A [Staphylococcus aureus
subsp. aureus TW20]
gi|282594172|gb|EFB99159.1| transcription termination factor NusA [Staphylococcus aureus A9765]
gi|294825062|gb|EFG41484.1| transcription termination factor NusA [Staphylococcus aureus A9754]
gi|302751089|gb|ADL65266.1| transcription termination-antitermination factor [Staphylococcus
aureus subsp. aureus str. JKD6008]
gi|304340153|gb|EFM06094.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|315198508|gb|EFU28837.1| transcription elongation factor NusA [Staphylococcus aureus subsp.
aureus CGS01]
gi|320140917|gb|EFW32764.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus MRSA131]
gi|329313936|gb|AEB88349.1| NusA antitermination factor [Staphylococcus aureus subsp. aureus
T0131]
gi|329727836|gb|EGG64287.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus 21189]
gi|329733550|gb|EGG69878.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus 21193]
Length = 391
Score = 329 bits (843), Expect = 8e-88, Method: Composition-based stats.
Identities = 148/372 (39%), Positives = 229/372 (61%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + + EK I R V++ + ++ A + Y + ++RVE+N + G + +
Sbjct: 5 ELLLATEYLEKEKKIPRAVLIDAIEAALITAYKKNYDSARNVRVELNMDQGTFKVIARKD 64
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER
Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ + EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+
Sbjct: 125 EILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++VFS ++
Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVFSENND 244
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DE
Sbjct: 245 IDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLEVIVDETNQS 304
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + E + + +
Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPVVEAEKVTEEDVA 364
Query: 368 VDEIIAHLLVAE 379
+++ E
Sbjct: 365 LEDADTTESTEE 376
>gi|315658444|ref|ZP_07911316.1| transcription termination factor NusA [Staphylococcus lugdunensis
M23590]
gi|315496773|gb|EFU85096.1| transcription termination factor NusA [Staphylococcus lugdunensis
M23590]
Length = 387
Score = 329 bits (843), Expect = 8e-88, Method: Composition-based stats.
Identities = 149/369 (40%), Positives = 225/369 (60%), Gaps = 1/369 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G +
Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGTFKVVARKS 64
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV ++ ++ L A ++P+ ++G + + + P DFGRV Q+AKQ ++Q++R+AER
Sbjct: 65 VVEEVSDHRDEVDLSTALVKNPAYEVGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+
Sbjct: 125 EILYDEFVDKEDDILTGLIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S +
Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSENPD 244
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
ID VGACVG +G+RV+AVV EL EKIDIV W D FV NAL P+ V +V++DE
Sbjct: 245 IDAVGACVGAKGARVEAVVEELGGEKIDIVQWDEDPKVFVKNALSPSQVLEVIVDESNQS 304
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF-FMQAI 366
VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + E I
Sbjct: 305 TVVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPIVEAENHADEAEI 364
Query: 367 NVDEIIAHL 375
+D+
Sbjct: 365 EIDDESIET 373
>gi|28210959|ref|NP_781903.1| transcription elongation factor NusA [Clostridium tetani E88]
gi|28203398|gb|AAO35840.1| N utilization substance protein A [Clostridium tetani E88]
Length = 361
Score = 329 bits (843), Expect = 9e-88, Method: Composition-based stats.
Identities = 146/340 (42%), Positives = 220/340 (64%), Gaps = 4/340 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDIS 61
E + + EK I +++ + + D++ A + Y T + V +N ETG+I
Sbjct: 2 NEEFIVALKEIVKEKGISAELLFNTIEDALVAAYKKNYSKQGATSQHVNVSMNRETGEIH 61
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
++ VVEEVE+ +I ++ A+ DP ++ +V + P FGRVA Q+AKQV++Q+
Sbjct: 62 VYSRKNVVEEVEDEFNEIFVEDAKTIDPRYELEDIVDIEVTPEKFGRVAAQAAKQVVVQR 121
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
++E ER Y EF +K +II+G V R + NV ++LG + V+ +E + E D+
Sbjct: 122 IKEEERRIVYNEFIEKECDIITGNVIRKDKTNVFINLGKIEAVLGPNEQMPGEEYNFNDK 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K YI +V+ +G QV++SRTHP + +LF +EVPEIYNGIV++K++SR+ GSR K+AV
Sbjct: 182 LKLYIVEVKNTTKGAQVVVSRTHPGLVKRLFELEVPEIYNGIVEIKSISREAGSRTKIAV 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+D ++D +GACVG +G+RVQ +V EL++EKIDI+ WS F+ NAL PA V KV +
Sbjct: 242 HSNDENVDSMGACVGPKGTRVQNIVNELKNEKIDIIKWSKLPDEFISNALSPARVLKVDV 301
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
DE+ +V+V QLSLAIG+ GQNVRLA++LTGW IDI
Sbjct: 302 DEESKSAKVLVEDNQLSLAIGKEGQNVRLAAKLTGWKIDI 341
>gi|157363142|ref|YP_001469909.1| transcription elongation factor NusA [Thermotoga lettingae TMO]
gi|157313746|gb|ABV32845.1| NusA antitermination factor [Thermotoga lettingae TMO]
Length = 344
Score = 329 bits (843), Expect = 9e-88, Method: Composition-based stats.
Identities = 139/339 (41%), Positives = 219/339 (64%), Gaps = 1/339 (0%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
L LL D + EK I +D ++ ++ ++ A + +GT ++ V+I+ TGDI LF++
Sbjct: 2 NLGLLDALDQLEEEKGISKDEIIEILEKALVSAYKKNFGTAKNVDVKIDRMTGDIQLFQV 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+VVEEVE+ Q+S++ AR DP + G + + +FGR+A Q+AKQV+IQ++RE
Sbjct: 62 FDVVEEVEDPLTQMSVEEARKADPLAESGKKIFKKISVKNFGRIAAQTAKQVLIQRIREL 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
E++RQY + G +I+ V RV + +G + + + E IS E++ G+ +K Y
Sbjct: 122 EKERQYEHYSTLAGSVITVEVIRVTSDWADIRVGKIETRLPKREWISGESISAGELIKVY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ V ++++GP++++SR P+F+ L +E+PEI N IVQ+KA+ R+PG R K+AV S++
Sbjct: 182 VQSVVKDKKGPKIMVSRAVPEFVAGLLKLEIPEIENDIVQIKAIVREPGVRTKVAVVSTN 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304
+DPVGAC+G GSR+ A++ EL+ EK+DI W+ D ++NAL PA VT V + D +
Sbjct: 242 PQVDPVGACIGEGGSRISAILRELKGEKVDIFRWTDDPRQLIVNALAPASVTSVEILDFE 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343
+ V+VP QLSLAIG+ GQN RLA++LTGW IDI
Sbjct: 302 RKAVRVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340
>gi|259501585|ref|ZP_05744487.1| N utilization substance protein A [Lactobacillus iners DSM 13335]
gi|259167103|gb|EEW51598.1| N utilization substance protein A [Lactobacillus iners DSM 13335]
Length = 374
Score = 328 bits (842), Expect = 1e-87, Method: Composition-based stats.
Identities = 132/343 (38%), Positives = 209/343 (60%), Gaps = 2/343 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
EL++ A+ +K I ++ ++ + ++ A + Y ++ V + G + +
Sbjct: 16 ELIKSFTALEEQKGIKQEEIVDAIKAALIAAYKKNYNQAQNVEVIFDENKGKFIVQAVKT 75
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV++ Q+SLK A + + + ++G + + P +FGR+A Q+AKQVI+Q++REAER
Sbjct: 76 VVDEVQDDRQQVSLKDALEINRAYEVGDEIRFEVTPQNFGRLAAQTAKQVIMQRLREAER 135
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
E+ E+I+GTV+RV+ V + +GN + V+ ++ + E +P DR+K +
Sbjct: 136 AHIIEEYSQYQNELITGTVERVDNRFVYIKIGNVEAVMPHNDQMPGEVYKPQDRIKVLVT 195
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +G Q+ +SRT P + +LF EVPE+YNG V++ +++R+ G R K+AV SSD +
Sbjct: 196 KVGSDAKGTQITVSRTAPGLVKRLFEQEVPEVYNGTVEIISIAREAGDRTKIAVKSSDPN 255
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE--DV 305
IDPVG VG +GSRVQ +V EL E ID+V + D + ++ NAL PA V V E D
Sbjct: 256 IDPVGTLVGPKGSRVQNIVNELSGENIDVVKYEEDPSDYIANALNPAEVIAVQFGEANDD 315
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
VIVP QLSLAIG++GQNVRLA++LT + IDI E +
Sbjct: 316 KSALVIVPDYQLSLAIGKKGQNVRLAARLTEYKIDIKPESQVE 358
>gi|297623578|ref|YP_003705012.1| transcription termination factor NusA [Truepera radiovictrix DSM
17093]
gi|297164758|gb|ADI14469.1| transcription termination factor NusA [Truepera radiovictrix DSM
17093]
Length = 397
Score = 328 bits (842), Expect = 1e-87, Method: Composition-based stats.
Identities = 141/400 (35%), Positives = 234/400 (58%), Gaps = 6/400 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+ + + +A+E+++D++ +L+ +++++A I V ++PE+G+I + +
Sbjct: 2 NKDFIDALNQLAHERNLDKEQLLASFEEALEQAYERNVEPGKQIEVHVDPESGEIDVLVV 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVE VE+ ++SL+ AR+ DP++++G + P+ P F R+AVQ+ KQVI QK+REA
Sbjct: 62 KRVVETVEDPGLEMSLEEARELDPTVEVGMEMELPVDPERFTRIAVQTTKQVITQKIREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
ER + E+KD+ G++I+ V R + NV VDLG + ++ E I E G R+K
Sbjct: 122 ERALVFNEYKDRAGDVITAVVSRTDNKRNVFVDLGRGEAIMPPKEQIPGERYMVGMRLKV 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
++ V RGP +L+SR P+ + L E+PEI + V++KAV+R+ G R+K+AV S
Sbjct: 182 FVMKVELGNRGPSILVSRAAPELLEYLMRQEIPEIADDTVEIKAVAREAGQRSKVAVVSR 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
+ ++DP+GAC+G RG+R+QAV EL+ E++DI++W P F+ NAL PA V + ++ +
Sbjct: 242 NPNVDPIGACIGHRGARIQAVTGELQRERVDIILWDPSPREFIRNALSPAKVGTIEVNSE 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
G +V V +QLSLAIG+ GQNVRLA++LTG+ ID++ E S ++
Sbjct: 302 TGEAKVTVSNDQLSLAIGKGGQNVRLAAKLTGFKIDLVASEHISDLDAALQAAASRVHDA 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404
I D+ F + A E + E +E
Sbjct: 362 PIATDDAK-----RAAFDALFSAAPSAAEEGDAAERVGDE 396
>gi|291562551|emb|CBL41367.1| transcription termination factor NusA [butyrate-producing bacterium
SS3/4]
Length = 388
Score = 328 bits (842), Expect = 1e-87, Method: Composition-based stats.
Identities = 147/352 (41%), Positives = 222/352 (63%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
EL++ + + E +I +D +L + +S+ A ++ +G +++V I+P+ D S++
Sbjct: 2 NKELMESMNILEKEYNISKDTLLEAIENSLLTACKNHFGKADNVKVIIDPDGCDYSVYME 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
EVVE VE+ QISL AR P +G +V P+ DFGR+A Q+AK VI+QK+RE
Sbjct: 62 KEVVETVEDPITQISLADARMIAPRHVLGDIVQIPIDSHDFGRIATQNAKNVILQKIREE 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
R Q E++ K E+++G V+R NV VDLG D ++ E + E + +R+K Y
Sbjct: 122 SRKSQLSEWQCKEKEVVTGIVQRYIGRNVSVDLGKIDAILPEAEQVKGEVFQRTERIKVY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I +V+ +GP++ +SRTHP + +LF E+ E+ +G V+++A++R+ GSR K+AV S+D
Sbjct: 182 ILEVKDSPKGPRISVSRTHPDLVRRLFEAEIAEVRDGTVEIRAIAREAGSRTKIAVSSTD 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
++DPVGACVG+ G+RV A+V ELR EKIDI+ W + A + NAL PA V VV DED
Sbjct: 242 PNVDPVGACVGLNGARVNAIVNELRGEKIDIINWDDNPAFLIENALSPAKVISVVADEDE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
+VIVP QLSLAIG+ GQN RLA++LT + IDI +E + D +
Sbjct: 302 KEAQVIVPDYQLSLAIGKEGQNARLAARLTTYKIDIKSETQARELGLFDDMD 353
>gi|15924256|ref|NP_371790.1| transcription elongation factor NusA [Staphylococcus aureus subsp.
aureus Mu50]
gi|15926849|ref|NP_374382.1| transcription elongation factor NusA [Staphylococcus aureus subsp.
aureus N315]
gi|148267756|ref|YP_001246699.1| transcription elongation factor NusA [Staphylococcus aureus subsp.
aureus JH9]
gi|150393815|ref|YP_001316490.1| transcription elongation factor NusA [Staphylococcus aureus subsp.
aureus JH1]
gi|156979587|ref|YP_001441846.1| transcription elongation factor NusA [Staphylococcus aureus subsp.
aureus Mu3]
gi|253315622|ref|ZP_04838835.1| transcription elongation factor NusA [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
gi|253733496|ref|ZP_04867661.1| transcription elongation factor NusA [Staphylococcus aureus subsp.
aureus TCH130]
gi|255006053|ref|ZP_05144654.2| transcription elongation factor NusA [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|257795678|ref|ZP_05644657.1| transcription termination factor NusA [Staphylococcus aureus A9781]
gi|258416081|ref|ZP_05682349.1| transcription termination-antitermination factor [Staphylococcus
aureus A9763]
gi|258421664|ref|ZP_05684588.1| transcription termination factor NusA [Staphylococcus aureus A9719]
gi|258444604|ref|ZP_05692933.1| transcription termination-antitermination factor [Staphylococcus
aureus A8115]
gi|258447563|ref|ZP_05695707.1| transcription termination-antitermination factor [Staphylococcus
aureus A6300]
gi|258449405|ref|ZP_05697508.1| transcription termination-antitermination factor [Staphylococcus
aureus A6224]
gi|258454784|ref|ZP_05702748.1| transcription termination-antitermination factor [Staphylococcus
aureus A5937]
gi|269202883|ref|YP_003282152.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus ED98]
gi|282892754|ref|ZP_06300989.1| transcription termination factor NusA [Staphylococcus aureus A8117]
gi|282927608|ref|ZP_06335224.1| transcription termination factor NusA [Staphylococcus aureus
A10102]
gi|295406203|ref|ZP_06816010.1| transcription termination factor NusA [Staphylococcus aureus A8819]
gi|296274824|ref|ZP_06857331.1| transcription elongation factor NusA [Staphylococcus aureus subsp.
aureus MR1]
gi|297244431|ref|ZP_06928314.1| transcription termination factor NusA [Staphylococcus aureus A8796]
gi|13701066|dbj|BAB42361.1| transcription termination-antitermination factor [Staphylococcus
aureus subsp. aureus N315]
gi|14247036|dbj|BAB57428.1| transcription termination-antitermination factor [Staphylococcus
aureus subsp. aureus Mu50]
gi|147740825|gb|ABQ49123.1| NusA antitermination factor [Staphylococcus aureus subsp. aureus
JH9]
gi|149946267|gb|ABR52203.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus JH1]
gi|156721722|dbj|BAF78139.1| transcription termination-antitermination factor [Staphylococcus
aureus subsp. aureus Mu3]
gi|253728550|gb|EES97279.1| transcription elongation factor NusA [Staphylococcus aureus subsp.
aureus TCH130]
gi|257789650|gb|EEV27990.1| transcription termination factor NusA [Staphylococcus aureus A9781]
gi|257839229|gb|EEV63705.1| transcription termination-antitermination factor [Staphylococcus
aureus A9763]
gi|257842350|gb|EEV66775.1| transcription termination factor NusA [Staphylococcus aureus A9719]
gi|257850097|gb|EEV74050.1| transcription termination-antitermination factor [Staphylococcus
aureus A8115]
gi|257853754|gb|EEV76713.1| transcription termination-antitermination factor [Staphylococcus
aureus A6300]
gi|257857393|gb|EEV80291.1| transcription termination-antitermination factor [Staphylococcus
aureus A6224]
gi|257863167|gb|EEV85931.1| transcription termination-antitermination factor [Staphylococcus
aureus A5937]
gi|262075173|gb|ACY11146.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus ED98]
gi|282590611|gb|EFB95688.1| transcription termination factor NusA [Staphylococcus aureus
A10102]
gi|282764751|gb|EFC04876.1| transcription termination factor NusA [Staphylococcus aureus A8117]
gi|285816948|gb|ADC37435.1| Transcription termination protein NusA [Staphylococcus aureus
04-02981]
gi|294968791|gb|EFG44813.1| transcription termination factor NusA [Staphylococcus aureus A8819]
gi|297178461|gb|EFH37707.1| transcription termination factor NusA [Staphylococcus aureus A8796]
gi|312829660|emb|CBX34502.1| transcription elongation protein nusA [Staphylococcus aureus subsp.
aureus ECT-R 2]
gi|315131060|gb|EFT87044.1| transcription elongation factor NusA [Staphylococcus aureus subsp.
aureus CGS03]
gi|329727637|gb|EGG64093.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus 21172]
Length = 391
Score = 328 bits (842), Expect = 1e-87, Method: Composition-based stats.
Identities = 149/372 (40%), Positives = 229/372 (61%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + + EK I R V++ + ++ A + Y + ++RVE+N + G + +
Sbjct: 5 ELLLATEYLEKEKKIPRAVLIDAIEAALITAYKKNYDSARNVRVELNMDQGTFKVIARKD 64
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER
Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ + EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+
Sbjct: 125 EILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++VFS ++
Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVFSENND 244
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DE
Sbjct: 245 IDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLEVIVDETNQS 304
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + E + + I
Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPVVEAEKVTEEDIA 364
Query: 368 VDEIIAHLLVAE 379
+++ E
Sbjct: 365 LEDADTTESTEE 376
>gi|21282878|ref|NP_645966.1| transcription elongation factor NusA [Staphylococcus aureus subsp.
aureus MW2]
gi|49486105|ref|YP_043326.1| transcription elongation factor NusA [Staphylococcus aureus subsp.
aureus MSSA476]
gi|253731885|ref|ZP_04866050.1| transcription elongation factor NusA [Staphylococcus aureus subsp.
aureus USA300_TCH959]
gi|297208088|ref|ZP_06924519.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|300912169|ref|ZP_07129612.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus TCH70]
gi|21204317|dbj|BAB95014.1| transcription termination-antitermination factor [Staphylococcus
aureus subsp. aureus MW2]
gi|49244548|emb|CAG42977.1| putative N utilization substance protein A [Staphylococcus aureus
subsp. aureus MSSA476]
gi|253724295|gb|EES93024.1| transcription elongation factor NusA [Staphylococcus aureus subsp.
aureus USA300_TCH959]
gi|296887331|gb|EFH26233.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|300886415|gb|EFK81617.1| transcription termination factor NusA [Staphylococcus aureus subsp.
aureus TCH70]
Length = 391
Score = 328 bits (842), Expect = 1e-87, Method: Composition-based stats.
Identities = 148/372 (39%), Positives = 229/372 (61%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + + EK I R V++ + ++ A + Y + ++RVE+N + G + +
Sbjct: 5 ELLLATEYLEKEKKIPRAVLIDAIEAALITAYKKNYDSARNVRVELNMDQGTFKVIARKD 64
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER
Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ + EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+
Sbjct: 125 EILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++VFS ++
Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVFSENND 244
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DE
Sbjct: 245 IDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLEVIVDETNQS 304
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + E + + +
Sbjct: 305 TIVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPVVEAEKVTEEDVA 364
Query: 368 VDEIIAHLLVAE 379
+++ E
Sbjct: 365 LEDADTTESTEE 376
>gi|315653432|ref|ZP_07906354.1| transcription elongation factor NusA [Lactobacillus iners ATCC
55195]
gi|315489357|gb|EFU78997.1| transcription elongation factor NusA [Lactobacillus iners ATCC
55195]
Length = 374
Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats.
Identities = 132/343 (38%), Positives = 208/343 (60%), Gaps = 2/343 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
EL++ A+ +K I ++ ++ + ++ A + Y ++ V + G + +
Sbjct: 16 ELIKSFTALEEQKGIKQEEIVDAIKAALIAAYKKNYNQAQNVEVIFDENKGKFIVQAVKT 75
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV++ Q+SLK A + + + ++G + + P +FGR+A Q+AKQVI+Q++REAER
Sbjct: 76 VVDEVQDDRQQVSLKDALEINRAYEVGDEIRFEVTPQNFGRLAAQTAKQVIMQRLREAER 135
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
E+ E+I+GTV+RV+ V + +GN + V+ ++ + E +P DR+K +
Sbjct: 136 AHIIEEYSQYQNELITGTVERVDNRFVYIKIGNVEAVMPHNDQMPGEVYKPQDRIKVLVT 195
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +G Q+ +SRT P + +LF EVPE+YNG V++ +++R+ G R K+AV SSD
Sbjct: 196 KVGSDAKGTQITVSRTAPGLVKRLFEQEVPEVYNGTVEIISIAREAGDRTKIAVKSSDPD 255
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE--DV 305
IDPVG VG +GSRVQ +V EL E ID+V + D + ++ NAL PA V V E D
Sbjct: 256 IDPVGTLVGPKGSRVQNIVNELSGENIDVVKYEEDPSDYIANALNPAEVIAVQFGEANDD 315
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
VIVP QLSLAIG++GQNVRLA++LT + IDI E +
Sbjct: 316 KSALVIVPDYQLSLAIGKKGQNVRLAARLTEYKIDIKPESQVE 358
>gi|303248242|ref|ZP_07334505.1| transcription termination factor NusA [Desulfovibrio fructosovorans
JJ]
gi|302490380|gb|EFL50291.1| transcription termination factor NusA [Desulfovibrio fructosovorans
JJ]
Length = 478
Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats.
Identities = 174/432 (40%), Positives = 270/432 (62%), Gaps = 7/432 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
EL + D ++ ++ IDRD+++ + ++++ + YG D+ V N E G+I +++
Sbjct: 1 MTELKKAIDQISKDRGIDRDLLIDTLEEAVRSSVIRKYGENLDVEVSYNDEQGEIEVYQF 60
Query: 66 LEVVEEVEN--YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
VVE+ + +I L AR DP++ + + L + GR+A QSAKQVIIQ++R
Sbjct: 61 KVVVEDDDVADPAAEICLSDARAIDPNVALDDEMGFKLTVENLGRIAAQSAKQVIIQRMR 120
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183
+AE++ Y E+KD+ GEIISG ++R + I++LG ++ ++ ++E I RE + GDRV+
Sbjct: 121 DAEQEIIYEEYKDRKGEIISGIIQRRDRTGWIINLGRTEALLPKEEQIPRERYKRGDRVQ 180
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+YI +V RGPQ+++SRTH +M LF EVPE+ +G V++ V+RDPGSRAK+AV S
Sbjct: 181 AYIIEVLPSGRGPQIIVSRTHADYMKALFAREVPEVSDGTVKIVGVARDPGSRAKVAVVS 240
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
D +DPVGACVG+RGSR+Q +V ELR E+IDIVVW+P+ AT+ NAL P+ VT++ +DE
Sbjct: 241 KDRDVDPVGACVGIRGSRIQNIVQELRGERIDIVVWNPEIATYAANALSPSRVTRISVDE 300
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
D +EV+V +QL+LAIGR+GQNV+LA++L GW IDI TE R ++ N +F
Sbjct: 301 DEKALEVVVSDDQLNLAIGRKGQNVKLAAKLLGWKIDIFTES-----RFREVNASKKFLE 355
Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423
Q +V EI ++A GF +E+LA I +I G +++ + +
Sbjct: 356 QLASVAEIPVDNILAAGFESMEQLAEAPDEAIDAISGMTPSKRDDLRAALKLMGAVAARS 415
Query: 424 LQKKIRELGVSE 435
+ E V+E
Sbjct: 416 EEADAEEDAVAE 427
>gi|329767072|ref|ZP_08258600.1| transcription termination factor NusA [Gemella haemolysans M341]
gi|328837797|gb|EGF87422.1| transcription termination factor NusA [Gemella haemolysans M341]
Length = 343
Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats.
Identities = 143/336 (42%), Positives = 210/336 (62%), Gaps = 2/336 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
+LL+ + EK I D+++ + ++ A + + ++RV+ N TGD +
Sbjct: 4 DLLKAIKLIEQEKGIAEDILVEAIELALLSAYKKNFNAAKNVRVDFNRATGDYKFIIRKD 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + + SL+ A +P+ ++G + P DFGRV Q+AKQ ++Q++REAE+
Sbjct: 64 VVEEVYDDRIEFSLEDALQINPAYEVGDIYEVVDLPSDFGRVGAQAAKQALLQRLREAEK 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y E+ + GEI+SGTV R++ V V LG + ++ +E + E P +K YI
Sbjct: 124 EILYKEYIEHEGEILSGTVDRIDSRYVYVKLGKIEAILGENERVKGETYIPQTPIKVYIA 183
Query: 188 DVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
V R P VL SR+HP+F+ +LF +EVPEIY+G V++K+VSR+ G R KLAV++ D
Sbjct: 184 KVDNPSRGSKPHVLASRSHPEFIRRLFEIEVPEIYSGTVEIKSVSREAGERTKLAVYAED 243
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+IDPVGACVG +G RV +V EL EKIDI+ W D F+ NAL PA V ++ +DE+
Sbjct: 244 KNIDPVGACVGNKGDRVNRIVEELNGEKIDIITWDADPVKFITNALAPAKVEEITIDEEE 303
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
V V +QLSLAIG++GQNVRLA++LTGW IDI
Sbjct: 304 KIANVKVKDDQLSLAIGKKGQNVRLAAKLTGWKIDI 339
>gi|206890467|ref|YP_002248539.1| transcription termination factor NusA [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|206742405|gb|ACI21462.1| transcription termination factor NusA [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 365
Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats.
Identities = 163/353 (46%), Positives = 244/353 (69%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
EL + + + EK I +D V+ ++ ++ A R YG S I+++I P+T DI++F + +
Sbjct: 4 ELKFLVEQIMREKGITKDAVIELLETALISAIRKKYGNKSSIKIKIEPQTFDINIFEIKK 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV++ +IS++ + + IG V PL DFGR+AVQ+AK V+ QK+RE ER
Sbjct: 64 VVEEVKDSASEISIEEVKQKYIDKGIGDTVEVPLSIQDFGRIAVQTAKHVLFQKIREIER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ + EFKDKVG I+SGTV R E GN + +G ++ ++ E + ++NL+ GD VK+YI+
Sbjct: 124 SQIFEEFKDKVGNIVSGTVLRKEKGNFYILVGKAEAILPDKEVLPQDNLKRGDIVKAYIF 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
+V++ + P + LSRTHP F+V LF +EVPEI +GIV++K ++RDPG R K+A S D S
Sbjct: 184 EVKQTPKEPIIKLSRTHPNFVVGLFTLEVPEIQDGIVEIKTIARDPGERTKIAASSKDPS 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVGACVGM+G+RVQAVV EL+ E+IDI+ +S D + F+ AL PA V KV ++E+
Sbjct: 244 VDPVGACVGMKGTRVQAVVRELKGERIDIIPYSDDMSFFIAKALTPATVLKVGINENEKT 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
V+V +QLSLAIG++GQNVRLAS+LTGW+ID+++E E + + K+ +
Sbjct: 304 AVVVVENDQLSLAIGKKGQNVRLASRLTGWSIDVLSESEYNQMKHKETERAFK 356
>gi|254796878|ref|YP_003081715.1| N utilization substance protein A [Neorickettsia risticii str.
Illinois]
gi|254590114|gb|ACT69476.1| N utilization substance protein A [Neorickettsia risticii str.
Illinois]
Length = 537
Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats.
Identities = 183/542 (33%), Positives = 304/542 (56%), Gaps = 51/542 (9%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQK-AARSLYGTMSDIRVEINPETGDISLFR 64
L++++ ++VA ++ ++ D + + + + YG I VEI+ ++G+I + +
Sbjct: 10 NLQIVESINSVAEKEGLNPDALFRAIGIELAHEIGKRQYG-DHRIFVEIDKKSGEIIVSK 68
Query: 65 LLEVVEE---------VENYTCQ-------------------ISLKVARDRDPSID--IG 94
L VVE+ +E T + I L A+ + P+++ G
Sbjct: 69 RLLVVEDSDKARMLEQLEVTTEEFPDSPSSFGVQEKIHHDDIIDLSTAKLKYPNVEHKAG 128
Query: 95 GVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV-----KRV 149
++++ LP G + + K + + + R++QY +K +VGEI++G V +
Sbjct: 129 DIITERLPSFSSGYIIARVMKAKLERLITSLVREKQYHCYKGRVGEIVTGIVKKSIDFKA 188
Query: 150 EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMV 209
++IVD+ +G++ + E+ RPG+RVK I V PQ+LLSR+ F+
Sbjct: 189 GSRSIIVDIAGVEGLLPYSSLVKGESFRPGERVKCVIQKVEYSVIKPQILLSRSSGSFVA 248
Query: 210 KLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTEL 269
+LF +VPEIY+ +V++K V+RD GSR+K+AVFSSD +IDPVGAC+GM GSR+ AVV+EL
Sbjct: 249 QLFSQQVPEIYDRVVEIKKVARDAGSRSKVAVFSSDRNIDPVGACIGMGGSRINAVVSEL 308
Query: 270 RDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVR 329
EKID+V +S D+ATF+ NAL+P K+ ++E+V +IE++VP E +SL IGR GQNV
Sbjct: 309 HGEKIDVVEYSSDTATFLANALKPIRPVKIAVNEEVKKIELVVPDESVSLVIGRGGQNVY 368
Query: 330 LASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELAC 389
L S L G+ ++++++ E S + ++F T F++A+NV+E+IA LLV EGF+ VEE+A
Sbjct: 369 LLSSLLGYRVEVLSDAEVSKKKMEEFISGTARFVEALNVEEVIAQLLVTEGFSTVEEIAD 428
Query: 390 VKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKV 449
S +A IEGFDE+ A EI+ RA EY+ Q + + + + ++ D+ +
Sbjct: 429 CNTSRLAFIEGFDEDVAEEIRSRAVEYVNEQPKRTQALVEKYKANPNMLALSSFDTGLLE 488
Query: 450 ALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKM 509
L +G+ +E +A S D+L + G + E +II +R +
Sbjct: 489 VLFSSGLTDLEKVAELSCDELREVIGDNGFAVPLL--------------EQLIIRSRETL 534
Query: 510 GW 511
GW
Sbjct: 535 GW 536
>gi|313906214|ref|ZP_07839560.1| transcription termination factor NusA [Eubacterium cellulosolvens
6]
gi|313468944|gb|EFR64300.1| transcription termination factor NusA [Eubacterium cellulosolvens
6]
Length = 415
Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats.
Identities = 140/345 (40%), Positives = 213/345 (61%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
ELL + + EK+I ++ +L + S+ +A ++ Y ++ V I+P+T D ++
Sbjct: 2 NSELLDALNILEKEKNISKETLLEAIQQSLLQAYKNQYDRSDNVVVSIDPDTCDFHIYAE 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVE VE+ +I+ A D + IG V + +FGR+A +AK VI+QK+RE
Sbjct: 62 KTVVETVEDPVTEIAQIDAFKYDSTAQIGETVRVEIQSKNFGRIATTNAKNVILQKIREE 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER + E+++K E+++GTV+R NV V+LG D ++ E + E R +RVK Y
Sbjct: 122 ERRALFNEYREKEHEVMTGTVQRYVGQNVNVNLGKVDALLTAKEMVKGEKFRLTERVKIY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ +VR +GP++L+SRTHP+ + +LF EV EI GI+++K+++R+ GSR K+AV+S+D
Sbjct: 182 VLEVRDTPKGPKILVSRTHPELVKRLFEEEVAEIREGIIEIKSIAREAGSRTKIAVWSND 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+D VGACVG+ GSRV A+V EL EKID++ W + A + +AL PA V V+ D D
Sbjct: 242 PDVDAVGACVGVNGSRVNAIVDELDGEKIDVIEWDENEAVLIEHALSPAKVISVLADPDE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350
VIVP QLSLAIG+ GQN RLA+ LT + IDI +E +
Sbjct: 302 KTALVIVPDYQLSLAIGKEGQNARLAAHLTQYKIDIKSESQAKEE 346
>gi|258434820|ref|ZP_05688894.1| transcription termination-antitermination factor [Staphylococcus
aureus A9299]
gi|257849181|gb|EEV73163.1| transcription termination-antitermination factor [Staphylococcus
aureus A9299]
Length = 391
Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats.
Identities = 149/372 (40%), Positives = 229/372 (61%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + + EK I R V++ + ++ A + Y + ++RVE+N + G + +
Sbjct: 5 ELLLATEYLEKEKKIPRAVLIDAIEAALITAYKKNYDSARNVRVELNMDQGTFKVIARKD 64
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER
Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPNDFGRVGAQAAKQAVMQRLRDAER 124
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ + EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+
Sbjct: 125 EILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++VFS ++
Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVFSENND 244
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DE
Sbjct: 245 IDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLEVIVDETNQS 304
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + E + + I
Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPVVEAEKVTEEDIA 364
Query: 368 VDEIIAHLLVAE 379
+++ E
Sbjct: 365 LEDADTTESTEE 376
>gi|320159637|ref|YP_004172861.1| transcription elongation protein NusA [Anaerolinea thermophila
UNI-1]
gi|319993490|dbj|BAJ62261.1| transcription elongation protein NusA [Anaerolinea thermophila
UNI-1]
Length = 633
Score = 328 bits (840), Expect = 2e-87, Method: Composition-based stats.
Identities = 167/465 (35%), Positives = 257/465 (55%), Gaps = 12/465 (2%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGT--MSDIRVEINPETGDISLF 63
+ E + + V EK + RDV+L + ++ A R + +++ +TG ++++
Sbjct: 2 KNEFVLAFNEVLEEKQLPRDVILKALESAMVSAYRRAVNASNAQQVEAKVDLDTGKVTIY 61
Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
EVVE+V ++SL+ AR +P + +G ++ P DFGRVA Q+A+QVI Q++R
Sbjct: 62 AEKEVVEQVREPLTEVSLEEARRYNPHVQLGDMIVVESTPRDFGRVAAQTARQVIQQRIR 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182
+AER Q + +VGEI+SG V+ V + + L ++G + R E I E R DRV
Sbjct: 122 DAERQMQLNHYAKQVGEIVSGVVQAVNAQGLTIGLEMRAEGTMPRKEMIPGERFRVHDRV 181
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
++ I +V+ RGPQ++LSRTH F+ +L EVPEIY+GIV++++++R+PG RAK+AV
Sbjct: 182 RALIAEVKDSPRGPQIILSRTHRNFLRRLLETEVPEIYHGIVEIRSIAREPGERAKVAVS 241
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
++ IDPVGACVG+RG R+QA+V EL DEKID++ W+ D A ++ AL PA VT V LD
Sbjct: 242 ATQPGIDPVGACVGIRGVRIQAIVRELHDEKIDVIEWNADPAVYIAKALSPARVTGVYLD 301
Query: 303 ED---VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
+ V+VP++QLSLAIGR GQN RLA++LTGW IDI + E +
Sbjct: 302 DKSSVNKTATVVVPEDQLSLAIGRDGQNARLAAKLTGWRIDIKSLPEAAAEALHRLQTDP 361
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
++ I E A V+ A E + E + F + RA E +
Sbjct: 362 EY--AQIAELEREAAEAVSGLLARKAEGRPLSAEEYDRMAQFVDRVQRRATRRAME-KKA 418
Query: 420 IDITLQKKIRELGVSEELCS---IPGIDSKIKVALGENGIKTMED 461
+ + +R +E + G+ + L E G T+ D
Sbjct: 419 EEDNRVQSVRASIPAEAFQTGILDSGLPEHVAYLLQEGGFSTVGD 463
>gi|150016083|ref|YP_001308337.1| transcription elongation factor NusA [Clostridium beijerinckii
NCIMB 8052]
gi|149902548|gb|ABR33381.1| NusA antitermination factor [Clostridium beijerinckii NCIMB 8052]
Length = 398
Score = 328 bits (840), Expect = 2e-87, Method: Composition-based stats.
Identities = 149/398 (37%), Positives = 243/398 (61%), Gaps = 8/398 (2%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM----SDIRVEINPETGDIS 61
E + + EK I D++ + + D++ A + Y +++V I+ ETG+I
Sbjct: 2 NEEFVGALKELVKEKGICEDLLFTTIQDAMVAAYKKNYANANTNAQNVKVNIDRETGEIH 61
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
++ VV+EV + +ISL+ A++ +P ++ ++S + P +FGRVA Q AKQV+ Q+
Sbjct: 62 VYAQKTVVDEVYDDVTEISLEEAKELNPKSEVDDIISLEVTPKNFGRVAAQLAKQVVTQR 121
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
++EAER Y E+K+K +II+GT+ R + G V V+LG +G+I +E I E + ++
Sbjct: 122 IKEAERTIIYDEYKEKEFDIITGTILRKDKGIVFVNLGKLEGIIGPNEQIPNEEYKFNEK 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K YI +V+ +GPQ+ +SRTHP + +LF +EVPEI+ G+V++K++SR+ GSR+K+AV
Sbjct: 182 LKLYIVEVKNGNKGPQIHVSRTHPGLVKRLFELEVPEIFEGVVEIKSISREAGSRSKIAV 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
+S+D +DP+GACVG +G RVQ++V EL++EKIDI+ WS + F+ N+L PA V V +
Sbjct: 242 YSNDEEVDPMGACVGPKGVRVQSIVNELKNEKIDIIKWSKNPEEFIANSLSPAKVLSVAV 301
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DE+ +V+V QLSLAIG+ GQNVRLA++LT W IDI ++ + ++D
Sbjct: 302 DENNKSAKVVVDDNQLSLAIGKEGQNVRLAAKLTNWKIDIKSKSQKEAQDEEDERI---- 357
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIE 399
+ ++ L D E+ E + E
Sbjct: 358 LNTEVEIENEQTTDLNELEIFDDIEVDDSIDEETSMEE 395
>gi|332653588|ref|ZP_08419333.1| transcription termination factor NusA [Ruminococcaceae bacterium
D16]
gi|332518734|gb|EGJ48337.1| transcription termination factor NusA [Ruminococcaceae bacterium
D16]
Length = 392
Score = 328 bits (840), Expect = 2e-87, Method: Composition-based stats.
Identities = 142/350 (40%), Positives = 213/350 (60%), Gaps = 7/350 (2%)
Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLF 63
+ E + EK I ++ + ++ A R + G ++ V+ NPET + +F
Sbjct: 15 DGQEFFAAIAQIEQEKGIKPGYMMEKITQALVSAYRRDHEGVGDNLIVDANPETNTVRMF 74
Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+VVE V+N +ISL+ A+ P ++G VV + P FGR+A Q+A+QVIIQ +R
Sbjct: 75 LKKDVVEVVDNPNTEISLQEAKAALPRAELGDVVRIEVKPKSFGRIAAQTARQVIIQGIR 134
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLR 177
EAE+ Y EF K E+++G V R++ N V L +D + +E + E+
Sbjct: 135 EAEQGMVYDEFSSKEHELLTGVVTRIDPRNGAVTLRISSGSEFTDAYLGANEQVKGESYV 194
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
G R+K Y+ +VR+ +GPQV++SRTHP + +LF +EVPEIY+G V++++++R+ GSR
Sbjct: 195 EGQRLKVYMVEVRKATKGPQVIISRTHPGLVKRLFELEVPEIYDGTVEIRSIAREAGSRT 254
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
KLAV+S+D ++DP+GACVG RG RV +V EL+ EK+DI+ +S D A ++ AL PA V
Sbjct: 255 KLAVWSADPNVDPIGACVGPRGQRVNTIVEELKGEKMDIIKYSDDPAEYIAAALSPADVV 314
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347
V D V+VP +QLSLAIG+ GQN RLA++LTGW IDI
Sbjct: 315 SVEPLPDGKSCRVVVPDDQLSLAIGKEGQNARLAAKLTGWKIDIKPASAP 364
>gi|283850804|ref|ZP_06368090.1| NusA antitermination factor [Desulfovibrio sp. FW1012B]
gi|283573727|gb|EFC21701.1| NusA antitermination factor [Desulfovibrio sp. FW1012B]
Length = 496
Score = 327 bits (839), Expect = 2e-87, Method: Composition-based stats.
Identities = 172/411 (41%), Positives = 264/411 (64%), Gaps = 7/411 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
EL + D ++ ++ IDRD+++ + ++++ + YG D+ V N E G+I +++
Sbjct: 1 MTELKKAIDQISKDRGIDRDLLVDTLEEAVRSSVIRKYGENLDVEVSYNDEQGEIEVYQF 60
Query: 66 LEVVEEVEN--YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
VVE+ + +I L AR DP++ + + L D GR+A QSAKQVIIQ++R
Sbjct: 61 KVVVEDDDVADPAAEICLADARAIDPNVALEDEMGFKLTVEDLGRIAAQSAKQVIIQRMR 120
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183
+AE++ Y E+KD+ GEIISG ++R + I++LG ++ ++ ++E I RE + GDRV+
Sbjct: 121 DAEQEIIYEEYKDRKGEIISGIIQRRDRSGWIINLGRTEALLPKEEQIPRERYKRGDRVQ 180
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+YI +V RGPQ+++SRTH +M LF EVPE+ +G V++ V+RDPGSRAK+AV S
Sbjct: 181 AYIIEVLPSGRGPQIIVSRTHADYMKALFAREVPEVSDGTVKIVGVARDPGSRAKVAVIS 240
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
D +DPVGACVG+RGSR+Q +V ELR E+IDIVVW+P+ AT+ NAL PA VT++ +DE
Sbjct: 241 KDRDVDPVGACVGIRGSRIQNIVQELRGERIDIVVWNPEIATYAANALSPARVTRISVDE 300
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
D +EV+V +QL+LAIGR+GQNV+LA++L GW IDI TE R ++ N +F
Sbjct: 301 DDKALEVVVTDDQLNLAIGRKGQNVKLAAKLLGWKIDIFTES-----RFREVNASKKFLE 355
Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414
Q +V EI +++ GF +E+LA I +I G +++ +
Sbjct: 356 QLASVAEIPVDNIISAGFESMEQLADAPDEAIDAISGMTPSKRNDLRAALK 406
>gi|168187910|ref|ZP_02622545.1| transcription termination factor NusA [Clostridium botulinum C str.
Eklund]
gi|169294236|gb|EDS76369.1| transcription termination factor NusA [Clostridium botulinum C str.
Eklund]
Length = 348
Score = 327 bits (838), Expect = 3e-87, Method: Composition-based stats.
Identities = 143/348 (41%), Positives = 223/348 (64%), Gaps = 5/348 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDIS 61
E ++ + EK I +++ + D++ A + Y G +++V I+ E G+I
Sbjct: 2 NAEFIEALREIVKEKGIGEELLFDTVEDALVSAYKKNYAKVGGNSQNVKVTIDRENGEIH 61
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
++ ++ EE + +ISL+ AR+ D +G +V + P FGR+A Q+AKQV+IQ+
Sbjct: 62 VYAQKKI-EEEPSGVNEISLEDAREIDSRYQMGDIVDLEVTPKSFGRIAAQTAKQVVIQR 120
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
++EAER Y EF K +II+GTV R + GNV VDL ++ V+ +E + E +
Sbjct: 121 IKEAERKVIYDEFIAKEFDIITGTVIRKDKGNVFVDLEKTEAVLGPNEQMPGEEYNFNQK 180
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K YI +V+ +GPQV++SRTHP + +LF +EVPEIY GIV++K+++R+ GSR K+AV
Sbjct: 181 LKLYIVEVKNTTKGPQVVVSRTHPGLVKRLFELEVPEIYAGIVEIKSIAREAGSRTKIAV 240
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
+S+D ++D GACVG +G RVQ +VTEL++EKIDI+ W + ++ NAL PA V V +
Sbjct: 241 YSNDENVDATGACVGPKGMRVQNIVTELKNEKIDIIKWDKEPEKYIANALSPARVLSVDI 300
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
D++ +++V QLSLAIG+ GQNVRLA++LTGW IDI +E +
Sbjct: 301 DDENKSAKIVVEDNQLSLAIGKEGQNVRLAAKLTGWKIDIKSESQVEE 348
>gi|225874866|ref|YP_002756325.1| transcription termination factor NusA [Acidobacterium capsulatum
ATCC 51196]
gi|225794228|gb|ACO34318.1| transcription termination factor NusA [Acidobacterium capsulatum
ATCC 51196]
Length = 548
Score = 327 bits (838), Expect = 3e-87, Method: Composition-based stats.
Identities = 174/418 (41%), Positives = 249/418 (59%), Gaps = 9/418 (2%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
L Q +A++ +K ID +VV+ + D+I A R Y T ++R E++ ETG+I + V
Sbjct: 5 LYQSIEALSRDKGIDPEVVVGAVEDAIALATRKYYKTQENMRAELDRETGEIRAYIYKAV 64
Query: 69 VEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VE +E+ QI+L+ AR P +++GG + P GR+A Q AKQVI QKVREA
Sbjct: 65 VETPELIEDPLNQITLEEARQLAPGVEVGGEIRFYKPTDVLGRIAAQMAKQVIFQKVREA 124
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ERD + E+ +VGE+++ TVKRVE +VI DLG ++ + + E E G+RV+
Sbjct: 125 ERDTVFNEYAHRVGEVLTATVKRVEMQDVIFDLGKAEARMPKREQSRLEQFSVGERVRVV 184
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ V R +GPQV++SR P+ + LF EVPEIY+ V ++A++R+ G R K+AV S D
Sbjct: 185 LLRVDRAAKGPQVIVSRAAPELVTSLFQGEVPEIYDNTVTIRAIAREAGERTKIAVMSRD 244
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304
+DPVGACVGM+G RVQ+++ ELR EKIDI+ +S + TF AL+PA V++V + D
Sbjct: 245 KDVDPVGACVGMKGMRVQSIIRELRGEKIDIIEFSEEVTTFAERALQPAKVSRVSIADLS 304
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+EVIV QLSLAIG++GQNVRLA++L GW IDI +EEE ++ Q
Sbjct: 305 EKHLEVIVDDTQLSLAIGKKGQNVRLAAKLLGWKIDIKSEEEKRQEVEQQMGGFAQGGTA 364
Query: 365 AI-----NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
+ E I LVA G VE LA + ++ I G E+T +I R Y
Sbjct: 365 TAIEEVKELGESIIQKLVAAGITTVESLADMTPEQLEEIPGIGEKTLEKISTAVRHYF 422
>gi|300361902|ref|ZP_07058079.1| transcription termination factor NusA [Lactobacillus gasseri
JV-V03]
gi|300354521|gb|EFJ70392.1| transcription termination factor NusA [Lactobacillus gasseri
JV-V03]
Length = 416
Score = 327 bits (838), Expect = 3e-87, Method: Composition-based stats.
Identities = 136/403 (33%), Positives = 225/403 (55%), Gaps = 2/403 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+++ + EK I +++++ + ++ A + Y ++ V + + G+ + +
Sbjct: 14 EMVEAFATLEKEKGIKQEIIVDAIKAALVAAYKKNYNQAQNVEVVFDEKKGNFKVNAIKT 73
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV++ ++SLK A + + + ++G + + P DFGR+A Q+AKQVI+Q++REAER
Sbjct: 74 VVDEVQDSRLEVSLKDALEINRAYEVGDEIRFEVTPKDFGRLAAQTAKQVIMQRLREAER 133
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ E+ EI++GTV+R + V V +GN + V+ ++ + EN P D+V+ +
Sbjct: 134 EHIISEYSQYKDEIVTGTVERRDNRFVYVKIGNVEAVMPHNDQLPGENYNPQDKVRVLVT 193
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +G Q+ +SRT P + +LF EVPE+Y+G V++ +++R+ G R K+AV S+D
Sbjct: 194 RVGSDSKGAQITVSRTAPDLVKRLFEQEVPEVYDGTVEIVSIAREAGDRTKIAVKSNDPD 253
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD-EDVG 306
IDPVG VG +G+RVQ +V EL E ID+V + + + F+ NAL PA V V +D
Sbjct: 254 IDPVGTLVGPKGARVQNIVNELGGENIDVVKYEENPSDFIANALNPAEVIAVQFSGDDDK 313
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
VIVP QLSLAIG+RGQNVRLA++LTG+ IDI E + + + T +
Sbjct: 314 NALVIVPDYQLSLAIGKRGQNVRLAARLTGYKIDIKPESQVEFVDSEGDDVETDQDIDDS 373
Query: 367 NV-DEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408
N AE + ++ S D + E
Sbjct: 374 NESSNEETTESTAEQLEEDSSDDFPNEEDVDSALDDDADKDEE 416
>gi|317495160|ref|ZP_07953530.1| transcription termination factor NusA [Gemella moribillum M424]
gi|316914582|gb|EFV36058.1| transcription termination factor NusA [Gemella moribillum M424]
Length = 343
Score = 327 bits (838), Expect = 4e-87, Method: Composition-based stats.
Identities = 144/336 (42%), Positives = 213/336 (63%), Gaps = 2/336 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
+LL+ + EK I D+++ + ++ A + + ++RV+ N TGD +
Sbjct: 4 DLLKAIKLIEQEKGIAEDILVEAIELALLSAYKKNFNAAKNVRVDFNRATGDYKFIIRKD 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + + +L+ A +P+ ++G + P DFGRV Q+AKQ ++Q++REAE+
Sbjct: 64 VVEEVYDDRIEFALEDALKINPAYEVGDIYEVVDLPDDFGRVGAQAAKQALLQRLREAEK 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ + E+ + GEI+SGTV R++ V V LG + ++ +E + EN P +K YI
Sbjct: 124 EILFKEYSEYEGEILSGTVDRIDTRYVYVKLGKIEAILGENERVPGENYVPQIPIKVYIA 183
Query: 188 DVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
V R P VL SR+HP+F+ +LF MEVPEIY+G V++K+VSR+ G R KLAVFS D
Sbjct: 184 KVDNPSRGSKPHVLASRSHPEFIRRLFEMEVPEIYSGTVEIKSVSREAGERTKLAVFSED 243
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
++DPVGACVG +G RV +V EL EKIDI+ W D F+ NAL PA V ++++DE+
Sbjct: 244 KNVDPVGACVGNKGDRVNRIVDELNGEKIDIITWDADPVKFITNALAPAKVEEIIIDEEE 303
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
V V ++QLSLAIG++GQNVRLA++LTGW IDI
Sbjct: 304 KIANVKVKEDQLSLAIGKKGQNVRLAARLTGWKIDI 339
>gi|312143666|ref|YP_003995112.1| NusA antitermination factor [Halanaerobium sp. 'sapolanicus']
gi|311904317|gb|ADQ14758.1| NusA antitermination factor [Halanaerobium sp. 'sapolanicus']
Length = 402
Score = 326 bits (837), Expect = 4e-87, Method: Composition-based stats.
Identities = 156/388 (40%), Positives = 241/388 (62%), Gaps = 1/388 (0%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+E +Q D + +K I ++V++ + ++ A + +G+ ++R++I+ + G++ ++
Sbjct: 2 NVEFIQALDDIEKDKGISKEVLIDAIETALVSAYKKDFGSKDNVRIDISTDAGEVKVYSR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
EVVEEVEN QISLK A D IG +V + P +FGR+A Q+AKQV++Q++REA
Sbjct: 62 KEVVEEVENENTQISLKEADKIDGKYKIGDIVEIEVTPGNFGRIAAQTAKQVVMQRIREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ERD + +FK+K E+I+GT++R N+++D+G ++ ++ E I+ E G R+K Y
Sbjct: 122 ERDVIFDQFKEKEDELITGTIQRFHNDNILIDMGKTEALLPPSEQIAGEKYEIGKRIKLY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ +V +GP++L+SRTHP + +LF +EVPEI+ G+V++KAV+R+ G R+K+AV S D
Sbjct: 182 VVEVSSTSKGPRILVSRTHPGLLKRLFEIEVPEIFQGLVEIKAVAREAGQRSKMAVASKD 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DPVGACVG +G RVQAVV +L EKIDIV W FV NAL PA V V +++
Sbjct: 242 KQVDPVGACVGPKGMRVQAVVEQLNREKIDIVKWDESPEVFVANALNPAEVIDVKINKSD 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
EV+VP QLSLAIG+ GQN RLA++LTGW +DI E E + K
Sbjct: 302 KIAEVVVPDFQLSLAIGKEGQNARLAAKLTGWKVDIKKESEIVKSPAKTKEIEKSAQELE 361
Query: 366 INVDE-IIAHLLVAEGFADVEELACVKI 392
++DE + + E +E V+
Sbjct: 362 KSLDEFEESSEMENEDLESKQEELEVQA 389
>gi|309791818|ref|ZP_07686305.1| NusA antitermination factor [Oscillochloris trichoides DG6]
gi|308226140|gb|EFO79881.1| NusA antitermination factor [Oscillochloris trichoides DG6]
Length = 442
Score = 326 bits (837), Expect = 4e-87, Method: Composition-based stats.
Identities = 148/377 (39%), Positives = 234/377 (62%), Gaps = 3/377 (0%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS---DIRVEINPETGDISL 62
+ + +A E+ I ++ ++ VM ++ A + G ++ V+++P+TG +
Sbjct: 2 KSDFYTAISQIAAERGIPKEAIIDVMEKALITAYKRTLGNNPPPMEVSVKLDPQTGAARV 61
Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+ +VV+EV + ++ L VAR P++ IG V P DFGR+A Q+AKQV++Q +
Sbjct: 62 YAEKQVVDEVYDERFEVELAVARKVQPNVQIGETVVIESTPNDFGRIAAQTAKQVVLQGI 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182
+E ER+ Y E+ D+ GE+I+ TV+R+ GNVI+++G ++ ++ E + + G R+
Sbjct: 122 KEVEREHIYGEYMDREGELITATVQRLAKGNVILEMGKAEAILPPKEQVESDRYYHGQRL 181
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
K Y+ ++R+E RGP+++ SRTH +V+LF MEVPEI+NG V++K+++R+PG R K+AV
Sbjct: 182 KVYLMEIRKEDRGPRLIASRTHKNLIVRLFEMEVPEIFNGTVEIKSIAREPGLRTKVAVA 241
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
+ IDPVG+CVGMRG R+Q +V EL EKID+V WSPD + NAL PA V +V L+
Sbjct: 242 ARQEGIDPVGSCVGMRGIRIQNIVNELNGEKIDVVQWSPDPKDLIANALSPAQVVEVHLN 301
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
ED VIVP +QLSLAIG+ GQNVRLA++L+GW IDI + + R
Sbjct: 302 EDDHVALVIVPDKQLSLAIGKEGQNVRLAAKLSGWRIDIKSATALLEEERAAAEVRGYAE 361
Query: 363 MQAINVDEIIAHLLVAE 379
+A+ + + + V
Sbjct: 362 AEAMATEVELTNAKVES 378
>gi|297621094|ref|YP_003709231.1| Transcription elongation protein nusA [Waddlia chondrophila WSU
86-1044]
gi|297376395|gb|ADI38225.1| Transcription elongation protein nusA [Waddlia chondrophila WSU
86-1044]
Length = 424
Score = 326 bits (837), Expect = 4e-87, Method: Composition-based stats.
Identities = 147/420 (35%), Positives = 240/420 (57%), Gaps = 10/420 (2%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+L+ I + + EK I R++V+ + +S+Q AAR S++ V+I+P+TG+I++F
Sbjct: 2 NKDLVAIFEYLEKEKGIQREIVIHAIEESLQAAARKSVSGASNVTVQIDPKTGNINVFSE 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
E+V+EVE +I L+ AR+ DP +IG + P DFGR+A Q A+Q+I QK+R A
Sbjct: 62 KEIVDEVEVPAQEILLEEAREIDPDCEIGQFIDILATPKDFGRIAAQKARQIISQKLRSA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
ERD Y E++ +V E++SGTVKR + N++VDLG + ++ + E + GDRV +
Sbjct: 122 ERDVIYEEYRHRVNEVVSGTVKRFVKGANLVVDLGKVEALMPMRQYPKTEKYKIGDRVLA 181
Query: 185 YIYDVR-REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+ +V + G +V+LSR+ P+F+ +L EVPEI GIV + + R+ G R KL V +
Sbjct: 182 LLMEVNDTDSGGAEVILSRSSPEFVRQLMIQEVPEIVEGIVVIDKIEREAGYRTKLTVRA 241
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
+D +DPVGACVGMRG+RV+ VV EL EKIDI+ +S D + NAL P + K+ + E
Sbjct: 242 TDQKVDPVGACVGMRGNRVKNVVRELNSEKIDIIPYSDDPIELLQNALSPIEIRKISISE 301
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
D I +++ + + IG++G N RL S+L G+ +++ + + E +
Sbjct: 302 DDRVISIVIDDDDYAAVIGKKGMNARLNSRLIGYELEVQRMTDYNKTMAIQRTELAESDD 361
Query: 364 QAINV--------DEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415
++ ++++ LVAEGF L ++++ E A I + R+
Sbjct: 362 PTLDHPLTGIEGVNKLVFEHLVAEGFNTPRTLLLASPEQLSNAASISLEMADHILEQVRK 421
>gi|241889783|ref|ZP_04777081.1| transcription termination factor NusA [Gemella haemolysans ATCC
10379]
gi|241863405|gb|EER67789.1| transcription termination factor NusA [Gemella haemolysans ATCC
10379]
Length = 343
Score = 326 bits (835), Expect = 7e-87, Method: Composition-based stats.
Identities = 141/336 (41%), Positives = 210/336 (62%), Gaps = 2/336 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
+LL+ + EK I D+++ + ++ A + + ++RV+ N TGD +
Sbjct: 4 DLLKAIKLIEQEKGIAEDILVEAIELALLSAYKKNFNVAKNVRVDFNRTTGDYKFIIRKD 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + + +L+ A +P+ ++G + P DFGRV Q+AKQ ++Q++REAE+
Sbjct: 64 VVEEVYDDRIEFALEDALKINPAYEVGDIYEVVDLPSDFGRVGAQAAKQALLQRLREAEK 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y E+ + GEI+SGT+ R++ V V LG + ++ +E + E P +K YI
Sbjct: 124 EILYKEYIEHEGEILSGTIDRIDSRYVYVKLGKIEAILGENERVKGETYVPQTPIKVYIA 183
Query: 188 DVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
V R P VL SR+HP+F+ +LF +EVPEIY+G V++K+VSR+ G R KLAV++ D
Sbjct: 184 KVDNPTRGSKPHVLASRSHPEFIRRLFEIEVPEIYSGTVEIKSVSREAGERTKLAVYAED 243
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+IDPVGACVG +G RV +V EL EKIDI+ W D F+ NAL PA V ++ +DE+
Sbjct: 244 KNIDPVGACVGNKGERVNRIVEELNGEKIDIITWDADPVKFITNALAPAKVEEINIDEEE 303
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
V V +QLSLAIG++GQNVRLA++LTGW IDI
Sbjct: 304 KIANVKVKDDQLSLAIGKKGQNVRLAAKLTGWKIDI 339
>gi|118443498|ref|YP_878211.1| transcription elongation factor NusA [Clostridium novyi NT]
gi|118133954|gb|ABK60998.1| transcription termination factor NusA [Clostridium novyi NT]
Length = 348
Score = 326 bits (835), Expect = 7e-87, Method: Composition-based stats.
Identities = 143/348 (41%), Positives = 222/348 (63%), Gaps = 5/348 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDIS 61
E ++ + EK I ++ + D++ A + Y G +++V I+ E G+I
Sbjct: 2 NAEFIEALREIVKEKGIGEQLLFDTVEDALVSAYKKNYAKVGGNSQNVKVTIDRENGEIH 61
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
++ ++ EE + +ISL+ AR+ D +G +V + P FGR+A Q+AKQV+IQ+
Sbjct: 62 VYAQKKI-EEEPSGVNEISLEDAREIDSRYQMGDIVDLEVTPKSFGRIAAQTAKQVVIQR 120
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
++EAER Y EF K +II+GTV R + GNV VDL ++ V+ +E + E +
Sbjct: 121 IKEAERKVVYDEFIAKEFDIITGTVIRKDKGNVFVDLEKTEAVLGPNEQMPGEEYNFNQK 180
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K YI +V+ +GPQV++SRTHP + +LF +EVPEIY G+V+VK+++R+ GSR K+AV
Sbjct: 181 LKLYIVEVKNTTKGPQVVVSRTHPGLVKRLFELEVPEIYAGVVEVKSIAREAGSRTKIAV 240
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
+S+D ++D GACVG +G RVQ +VTEL++EKIDI+ W + ++ NAL PA V V +
Sbjct: 241 YSNDENVDATGACVGPKGMRVQNIVTELKNEKIDIIKWDKEPEKYIANALSPARVLSVDI 300
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
D++ +++V QLSLAIG+ GQNVRLA++LTGW IDI +E +
Sbjct: 301 DDENKSAKIVVEDSQLSLAIGKEGQNVRLAAKLTGWKIDIKSESQVEE 348
>gi|289423074|ref|ZP_06424889.1| transcription termination factor NusA [Peptostreptococcus
anaerobius 653-L]
gi|289156405|gb|EFD05055.1| transcription termination factor NusA [Peptostreptococcus
anaerobius 653-L]
Length = 424
Score = 325 bits (834), Expect = 9e-87, Method: Composition-based stats.
Identities = 160/410 (39%), Positives = 250/410 (60%), Gaps = 7/410 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+E +Q + + ++ ID++V+L + ++ A + +G+ ++R+++N ETGDI ++
Sbjct: 2 NVEFMQALEELVKDRGIDKEVLLETIEQALTSAYKKNFGSAQNVRIDLNRETGDIKVYSQ 61
Query: 66 LEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
VV+ ++ + +I L AR+ P+ ++G ++ + PMDFGR+A Q+AKQ+++QK+R
Sbjct: 62 RVVVDEQDLYDNFLEIELSEAREISPNYELGDIIEHEVTPMDFGRIAAQTAKQIVVQKIR 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRPG 179
EAER+ Y EF +K E+I+G + R + V +G +GV+ E I E + G
Sbjct: 122 EAEREMTYNEFIEKQDELITGEISRTSQRDGKCIVFAQIGKGEGVLLASEQIRGEEYKIG 181
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
+K Y+ DV + + PQ+LLSR+H + +LF MEVPEI +G VQ+K++SR+ GSR K+
Sbjct: 182 TNMKFYVVDVNKTSKNPQILLSRSHTGLVKRLFEMEVPEIQDGTVQIKSISREAGSRTKM 241
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV S+D +IDP+GACVG +GSRV+ +V EL DEKIDIV +S D FV +L P+ VTKV
Sbjct: 242 AVLSTDENIDPIGACVGTQGSRVRNIVDELGDEKIDIVKYSDDIGQFVEASLSPSKVTKV 301
Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
++E VIVP QLSLAIG+ GQN RLA++LT W IDI E + + ++ E+
Sbjct: 302 FVNEKEKSAVVIVPDYQLSLAIGKEGQNARLAARLTNWKIDIKPESDFTEEDERALLEKI 361
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409
A+ +E + L E A+ + S ++E D E A EI
Sbjct: 362 ASDKLAVE-EEKASKELAEENPAEDMDKEVALESAQEAMEPADVEVAEEI 410
>gi|206901624|ref|YP_002250930.1| transcription termination factor NusA [Dictyoglomus thermophilum
H-6-12]
gi|206740727|gb|ACI19785.1| transcription termination factor NusA [Dictyoglomus thermophilum
H-6-12]
Length = 364
Score = 325 bits (833), Expect = 1e-86, Method: Composition-based stats.
Identities = 146/337 (43%), Positives = 220/337 (65%)
Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71
+ + + EK +D++VVL + ++ A + YGT RVEIN +IS+F + +VVE+
Sbjct: 10 VLEQIITEKKLDKNVVLEALRKALLSAFKKAYGTSKGARVEINFNKQEISIFVVKKVVEK 69
Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131
V + +ISL+ A+ P +G + + P +FGR+AVQ AKQVI+Q ++EAER Y
Sbjct: 70 VNDNISEISLEEAKSLKPDAKLGDEIEIEIEPQEFGRIAVQVAKQVIMQSLKEAERRILY 129
Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRR 191
++K K GE+++GTV R+E GNV V + + V+ E I E G R+++Y+ +VR+
Sbjct: 130 EKYKAKEGELVNGTVVRIEKGNVYVRFPDIEAVLPVKEQIPGEEYWIGRRLRAYLLEVRK 189
Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPV 251
+ P V+LSR+HP F+ +LF +EVPEI G V++ +++R+PG R+K+AV+S +DP+
Sbjct: 190 TTKDPLVILSRSHPGFLKRLFELEVPEIREGTVEIVSIAREPGMRSKVAVYSHLPEVDPI 249
Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVI 311
GACVG +G R+Q ++ EL EKIDIV+WS D A FV +L PA V + E+ + VI
Sbjct: 250 GACVGYKGVRIQNIINELNGEKIDIVLWSKDPAEFVARSLSPAKPISVEIREEEHKAIVI 309
Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
VP +Q SLAIG+ GQNVRLA +LT W ID+ T E+ +
Sbjct: 310 VPPDQFSLAIGKDGQNVRLAVKLTSWRIDVRTPEQYA 346
>gi|313885291|ref|ZP_07819042.1| transcription termination factor NusA [Eremococcus coleocola
ACS-139-V-Col8]
gi|312619397|gb|EFR30835.1| transcription termination factor NusA [Eremococcus coleocola
ACS-139-V-Col8]
Length = 415
Score = 325 bits (833), Expect = 1e-86, Method: Composition-based stats.
Identities = 146/406 (35%), Positives = 231/406 (56%), Gaps = 5/406 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
EL+Q + EK I DV+ + ++ A + Y ++ V N + G I +F++ +
Sbjct: 4 ELVQAMQVLEEEKGISADVIKDALESALVLAYKRNYDQSQNVEVVFNADKGTIKVFQVKK 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + +I+L A D + ++ + + P DFGR+A Q+AK VI+Q++REAER
Sbjct: 64 VVEEVNDPNEEIALSDALDIHKAYELDDTIKFEITPKDFGRIATQTAKHVILQRLREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y E+ EI++GTV+R + + ++LG + V+ E I E L RVK Y+
Sbjct: 124 NIVYDEYIQYEDEILNGTVERQDNRFIYINLGKIEAVMPVREQIPTEELTMDQRVKVYVS 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + RGPQ+++SR H F+ +LF EVPEI+NGIV++ +++R+ G R+K+AV S DS
Sbjct: 184 KVDKTNRGPQIIVSRAHANFLRRLFENEVPEIFNGIVEIMSIAREAGDRSKVAVRSQDSQ 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD--EDV 305
IDP+G CVG G RV +V EL E IDIV + D A F+ NA+ P+ V VV + E+
Sbjct: 244 IDPIGTCVGAGGERVNTIVAELNGENIDIVEYDDDPAQFIKNAMSPSQVIDVVFNDPENP 303
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
V+VP QLSLAIG++GQN RLA++LTG+ IDI +E + + +++ N+
Sbjct: 304 NHCIVVVPDYQLSLAIGKKGQNARLAARLTGYKIDIKSESDFQVYQEEMANQDLTSQEVD 363
Query: 366 INVDEII---AHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408
+ + + +V + + E+ + ++E A E
Sbjct: 364 MMEGQEVLAADASMVEDPVTESLEVVENMEENPDFEDIIEDEEATE 409
>gi|167746758|ref|ZP_02418885.1| hypothetical protein ANACAC_01470 [Anaerostipes caccae DSM 14662]
gi|317471572|ref|ZP_07930918.1| transcription termination factor NusA [Anaerostipes sp. 3_2_56FAA]
gi|167653718|gb|EDR97847.1| hypothetical protein ANACAC_01470 [Anaerostipes caccae DSM 14662]
gi|316900951|gb|EFV22919.1| transcription termination factor NusA [Anaerostipes sp. 3_2_56FAA]
Length = 391
Score = 325 bits (832), Expect = 1e-86, Method: Composition-based stats.
Identities = 147/358 (41%), Positives = 224/358 (62%), Gaps = 5/358 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
EL+ + + EK ID+DV++ + +S+ A + +G ++ V ++ ETGDI ++ E
Sbjct: 3 ELIDALNQLEKEKHIDKDVIMEAIENSLVAACKRDFGNADNVVVNMDRETGDIVVYAEKE 62
Query: 68 VVE----EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
VVE E + QISL A+ DP ++G +V + P DFGR+A A+ VI+QK++
Sbjct: 63 VVETADGEDFDPALQISLAKAKAMDPKYELGDIVRVEITPKDFGRIAAMHARSVIVQKIK 122
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182
E ER + F K +I++G V+R NV V L +D ++ + E I E +P +R+
Sbjct: 123 EEERRVVFDHFYCKEKDIVTGVVQRYVGENVSVSLDDKTDALLMKSEQIRGEVFQPTERI 182
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
K YI +V+ RGP++L+SRTHP + +LF EV EI +GIV++K + R+ GSR KLAV+
Sbjct: 183 KLYIVEVKDTNRGPRILVSRTHPDLVKRLFEKEVAEIQDGIVEIKNIVREAGSRTKLAVW 242
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
S+D ++DPVGACVGM G+RV A+V +L+ EKIDI+ W+ D ++ NAL P+ V V +D
Sbjct: 243 SNDPNVDPVGACVGMNGARVNAIVNDLKGEKIDIINWNEDPCVYIENALSPSKVVSVSVD 302
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+ +V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + + E +
Sbjct: 303 VEEKSAQVVVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSESQAEEEEELQGYEDYE 360
>gi|299144046|ref|ZP_07037126.1| transcription termination factor NusA [Peptoniphilus sp. oral taxon
386 str. F0131]
gi|298518531|gb|EFI42270.1| transcription termination factor NusA [Peptoniphilus sp. oral taxon
386 str. F0131]
Length = 379
Score = 324 bits (831), Expect = 2e-86, Method: Composition-based stats.
Identities = 148/347 (42%), Positives = 230/347 (66%), Gaps = 2/347 (0%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E + + + EK I ++V+ + ++ + R +GT +++V+IN ++G+I++F L
Sbjct: 2 NEEFIGALNELEKEKGISKEVIFEALESALVSSYRKNFGTSQNVQVDINKDSGEINVFAL 61
Query: 66 LEVVEEV--ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
++V +V E+ QI + A+D D ++G V S+ + P +FGR+A Q+AKQV+IQ+++
Sbjct: 62 KDIVADVDFEDENLQIPISKAKDIDAKFELGDVYSEKIKPANFGRIAAQTAKQVVIQRIK 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183
+AERD + +F D+ EII+G V+RV YGNV DLG ++ ++ E I E R GDR+K
Sbjct: 122 DAERDIIFEDFTDRENEIITGQVQRVSYGNVYFDLGKTEAILPVAEQIKGEVYRQGDRLK 181
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+ +V++ +GPQ++LSR+HP + +LF +EVPEI GIV+V ++SR+ GSR K+AVFS
Sbjct: 182 LLLLEVKKTTKGPQIILSRSHPNLVKRLFELEVPEISEGIVEVYSISREAGSRTKIAVFS 241
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
+ +DP+GACVG +GSRV+A+V EL DEK+DIV++ F+ NAL P+ V KV +E
Sbjct: 242 RNEDVDPLGACVGYKGSRVKAIVDELHDEKVDIVIYEKQIDKFIANALSPSKVEKVFANE 301
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350
V+VP QLSLAIG+ GQN RLA++LT W IDI + +
Sbjct: 302 KEKSALVVVPDYQLSLAIGKEGQNARLAAKLTNWKIDIKSVSQFEEY 348
>gi|159897005|ref|YP_001543252.1| NusA antitermination factor [Herpetosiphon aurantiacus ATCC 23779]
gi|159890044|gb|ABX03124.1| NusA antitermination factor [Herpetosiphon aurantiacus ATCC 23779]
Length = 444
Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats.
Identities = 150/340 (44%), Positives = 224/340 (65%), Gaps = 4/340 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS---DIRVEINPETGDISL 62
+ + +A E+ I R+ V V+ ++ A R G+ D+++E+ P TG I +
Sbjct: 2 KSDFYAAISQIAAERGIPRESVQDVVEQALISAYRRYLGSNPPPVDVKIELEPNTGRIRV 61
Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+ +VV+EV + +I ++ AR+ ++IG V P DFGR+A Q+AKQV++Q++
Sbjct: 62 YAEKQVVDEVMDDRFEIDIEDARNVRADVEIGETVYVESTPDDFGRIAAQTAKQVVLQRI 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182
+E ERD Y E+ D+ GEI++ TV+R GNVI+++G ++ ++ + E IS +N R G R+
Sbjct: 122 KEVERDHIYGEYFDREGEIVTATVQRTAKGNVILEVGRAEAILPQKEQISHDNYRHGQRL 181
Query: 183 KSYIYDVRRE-QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
K Y+ + RR+ RGP+++ SRTH + +LF MEVPEIYNG V++K+++R+PG R+K+AV
Sbjct: 182 KVYLMEARRDDPRGPRLVASRTHKDLIKRLFEMEVPEIYNGTVEIKSIAREPGLRSKVAV 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
+ IDPVG+CVGMRG R+Q +V EL EKID+V W D F+ NAL PA V +V L
Sbjct: 242 HARQEGIDPVGSCVGMRGIRIQNIVNELNGEKIDVVQWGADMRVFIANALSPAQVVEVHL 301
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
DE V+VP +QLSLAIG+ GQNVRLA++L GW IDI
Sbjct: 302 DEGEKTATVVVPDKQLSLAIGKEGQNVRLAAKLVGWRIDI 341
>gi|251778646|ref|ZP_04821566.1| transcription termination factor NusA [Clostridium botulinum E1
str. 'BoNT E Beluga']
gi|243082961|gb|EES48851.1| transcription termination factor NusA [Clostridium botulinum E1
str. 'BoNT E Beluga']
Length = 384
Score = 324 bits (830), Expect = 3e-86, Method: Composition-based stats.
Identities = 148/373 (39%), Positives = 235/373 (63%), Gaps = 4/373 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDIS 61
E + + EK I D++ + + D++ A + Y + ++++ IN E G+I
Sbjct: 2 NEEFVGALKEIVKEKGISEDLLFTTIEDAMVAAYKKNYANLNTSAQNVKISINRENGEIH 61
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
++ VV+EV + +ISL+ A+ +P ++ VV + P +FGRVA Q AKQV+ Q+
Sbjct: 62 VYAQKMVVDEVYDEVTEISLEEAKAINPKYEVDDVVDLEVTPKNFGRVAAQLAKQVVTQR 121
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
++EAER+ Y E+K+K +II+GT+ R + G V V LG +G+I +E +S E+ R +
Sbjct: 122 IKEAERNIIYSEYKEKEFDIITGTILRKDKGMVFVSLGKIEGIIGPNEQMSNEDYRFNEM 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K YI +V+ +G QV +SRTHP + +LF +EVPEI+NG+V++K++SR+ GSR+K+AV
Sbjct: 182 LKLYIVEVKNTSKGAQVHVSRTHPGLVKRLFELEVPEIFNGVVEIKSISREAGSRSKIAV 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
+S+D +D +GACVG +G RVQ +V EL++EKIDI+ WS D A F+ NAL PA V +
Sbjct: 242 YSNDEEVDAMGACVGPKGVRVQNIVNELKNEKIDIIKWSKDPAEFISNALSPAKVINAEV 301
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
+E+ +++V +QLSLAIG+ GQNVRLA++LT W IDI ++ + + Q
Sbjct: 302 NEESKSAKIVVADDQLSLAIGKEGQNVRLAAKLTNWKIDIKSKSQQEALEAEQEKAIDQD 361
Query: 362 FMQAINVDEIIAH 374
+ V E +A
Sbjct: 362 VDMSEEVTENVAE 374
>gi|188588167|ref|YP_001920615.1| transcription elongation factor NusA [Clostridium botulinum E3 str.
Alaska E43]
gi|188498448|gb|ACD51584.1| transcription termination factor NusA [Clostridium botulinum E3
str. Alaska E43]
Length = 384
Score = 324 bits (830), Expect = 3e-86, Method: Composition-based stats.
Identities = 147/373 (39%), Positives = 235/373 (63%), Gaps = 4/373 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDIS 61
E + + EK I D++ + + D++ A + Y + ++++ IN E G+I
Sbjct: 2 NEEFVGALKEIVKEKGISEDLLFTTIEDAMVAAYKKNYANLNTSAQNVKISINRENGEIH 61
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
++ VV+EV + +ISL+ A+ +P ++ +V + P +FGRVA Q AKQV+ Q+
Sbjct: 62 VYAQKMVVDEVYDEVTEISLEEAKAINPKYEVDDIVDLEVTPKNFGRVAAQLAKQVVTQR 121
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
++EAER+ Y E+K+K +II+GT+ R + G V V LG +G+I +E +S E+ R +
Sbjct: 122 IKEAERNIIYSEYKEKEFDIITGTILRKDKGMVFVSLGKIEGIIGPNEQMSNEDYRFNEM 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K YI +V+ +G QV +SRTHP + +LF +EVPEI+NG+V++K++SR+ GSR+K+AV
Sbjct: 182 LKLYIVEVKNTSKGAQVHVSRTHPGLVKRLFELEVPEIFNGVVEIKSISREAGSRSKIAV 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
+S+D +D +GACVG +G RVQ +V EL++EKIDI+ WS D A F+ NAL PA V +
Sbjct: 242 YSNDEEVDAMGACVGPKGVRVQNIVNELKNEKIDIIKWSKDPAEFISNALSPAKVINAEV 301
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
+E+ +++V +QLSLAIG+ GQNVRLA++LT W IDI ++ + + Q
Sbjct: 302 NEESKSAKIVVADDQLSLAIGKEGQNVRLAAKLTNWKIDIKSKSQQEALEAEQEKAIDQD 361
Query: 362 FMQAINVDEIIAH 374
+ V E +A
Sbjct: 362 VDMSEEVTENVAE 374
>gi|172057849|ref|YP_001814309.1| NusA antitermination factor [Exiguobacterium sibiricum 255-15]
gi|171990370|gb|ACB61292.1| NusA antitermination factor [Exiguobacterium sibiricum 255-15]
Length = 375
Score = 324 bits (830), Expect = 3e-86, Method: Composition-based stats.
Identities = 153/360 (42%), Positives = 224/360 (62%), Gaps = 5/360 (1%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-IRVEINPETGDISLFRLLE 67
LL+ + +A EK ID+++++ + ++ A R +G S+ ++VE + +TGDI +F L E
Sbjct: 5 LLEAIEQIAKEKEIDKNIIIDALEQALISAYRRNFGKESEAVKVEFDQQTGDIRVFALKE 64
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVE + Q+SL+ A + DP+ ++G + P DFGRVA Q+AKQ++ QK+REAER
Sbjct: 65 VVERLTQPEEQLSLEEAHEIDPTYELGDFHKVEVTPGDFGRVAAQTAKQIVTQKMREAER 124
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+R Y F D+ EI++G V+R + N+ V+L + V+ E + E + +K Y+
Sbjct: 125 ERIYNHFADREDEIMTGMVERQDARNLYVNLEGIEAVLTTHEQMPNERFGIREYIKVYVT 184
Query: 188 DVRREQRGP--QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
V +G +L+SRTHP + +LF +EVPEI +G V+VK+V+R+ G R+K+AV S
Sbjct: 185 KVDPMVKGSGASILVSRTHPGLLKRLFEIEVPEIASGEVEVKSVAREAGDRSKIAVAS-- 242
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
IDPVGACVG +G+RVQ +V EL EKIDIV +S D +V NAL PA V V ++E
Sbjct: 243 DEIDPVGACVGQKGARVQRIVNELNGEKIDIVRYSDDPKEYVANALSPAQVVAVYVNEPA 302
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
V+VP QLSLAIG+RGQN RLA++LTGW IDI +E E KD + +
Sbjct: 303 KATIVVVPDFQLSLAIGKRGQNARLAAKLTGWKIDIKSESEAESMELKDVFMKVEPATAE 362
>gi|187934771|ref|YP_001885468.1| transcription elongation factor NusA [Clostridium botulinum B str.
Eklund 17B]
gi|187722924|gb|ACD24145.1| transcription termination factor NusA [Clostridium botulinum B str.
Eklund 17B]
Length = 384
Score = 324 bits (830), Expect = 3e-86, Method: Composition-based stats.
Identities = 146/373 (39%), Positives = 237/373 (63%), Gaps = 4/373 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDIS 61
E + + EK I D++ + + D++ A + Y + ++++ IN E G+I
Sbjct: 2 NEEFVGALKEIVKEKGISEDLLFTTIEDAMVAAYKKNYANLNTSAQNVKISINRENGEIH 61
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
++ VV+EV + +ISL+ A+ +P ++ +V + P +FGRVA Q AKQV+ Q+
Sbjct: 62 VYAQKMVVDEVYDEVTEISLEEAKAINPKYEVDDIVDLEVTPKNFGRVAAQLAKQVVTQR 121
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
++EAER+ Y E+K+K +II+GT+ R + G V V LG +G+I +E +S E+ R ++
Sbjct: 122 IKEAERNIIYSEYKEKEFDIITGTILRKDKGMVFVSLGKIEGIIGPNEQMSNEDYRFNEK 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K YI +V+ +G QV +SRTHP + +LF +EVPEI+NG+V++K++SR+ GSR+K+AV
Sbjct: 182 LKLYIVEVKNTSKGAQVHVSRTHPGLVKRLFELEVPEIFNGVVEIKSISREAGSRSKIAV 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
+S+D +D +GACVG +G RVQ +V EL++EKIDI+ W+ D A F+ NAL PA V +
Sbjct: 242 YSNDEEVDAMGACVGPKGIRVQNIVNELKNEKIDIIKWNKDPAEFISNALSPAKVISAEV 301
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
+E+ +++V +QLSLAIG+ GQNVRLA++LT W IDI ++ + + Q
Sbjct: 302 NEESKSAKIVVADDQLSLAIGKEGQNVRLAAKLTNWKIDIKSKSQQEALEAEKEKAMDQN 361
Query: 362 FMQAINVDEIIAH 374
+ +V E +A
Sbjct: 362 ADISEDVTENVAE 374
>gi|297180246|gb|ADI16466.1| transcription elongation factor [uncultured bacterium HF770_11D24]
Length = 467
Score = 323 bits (829), Expect = 3e-86, Method: Composition-based stats.
Identities = 154/431 (35%), Positives = 244/431 (56%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E + + EK +DR++++S + D++ AA+ G ++R EI+ + GDI F
Sbjct: 2 NAEFIASMEYWEREKGLDREILISAVEDAMVSAAKRAVGPARELRCEIDRKDGDIRAFAT 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
L VVE V + +ISL A+ P + + + P +FGR+A Q+AKQ ++Q +R A
Sbjct: 62 LIVVETVTDKQNEISLDSAQRIKPDAQLEEELEVEVTPKNFGRIASQNAKQALMQAIRRA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
E+ Y EFKD+VG+I+SG V+ + +V+VDLG + ++ E + E + G+R++
Sbjct: 122 EKALIYTEFKDRVGDIVSGEVRGFDRSDVLVDLGKFEALLPNRERVPTEEYQRGERIRCL 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ V +++LSR F++KLF +EV EI +G +++KA++R+PG R KLAV S D
Sbjct: 182 VKAVEGSDSSSEIILSRRDSDFVIKLFQLEVSEINDGTIEIKAIAREPGFRTKLAVHSRD 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DPVGACVG+RG RV+ +V EL +EKIDI+ W D T+V N+L PA + ++ + +D
Sbjct: 242 EKVDPVGACVGLRGQRVKNIVRELNNEKIDIIRWDSDVETYVTNSLAPAQLKRLEIQQDR 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
R+ V+V +QLSLAIGRRGQN RL S LTGW IDI E+E + ++ +
Sbjct: 302 KRVHVLVDPDQLSLAIGRRGQNARLTSLLTGWQIDIDPEQEVRVGFEEQVADAVDALAAI 361
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425
+++ A LV G ++ L V+ S++A I G E + E +
Sbjct: 362 PGIEKEQADALVHAGLLTLDALNGVEASDLADIPGLAEHAESVLAAAHAEKVRRAGAGTN 421
Query: 426 KKIRELGVSEE 436
I + +
Sbjct: 422 PLINDAAPEAD 432
>gi|160932906|ref|ZP_02080295.1| hypothetical protein CLOLEP_01747 [Clostridium leptum DSM 753]
gi|156867980|gb|EDO61352.1| hypothetical protein CLOLEP_01747 [Clostridium leptum DSM 753]
Length = 361
Score = 323 bits (829), Expect = 4e-86, Method: Composition-based stats.
Identities = 146/358 (40%), Positives = 215/358 (60%), Gaps = 3/358 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+ + + E+ I D +L + +I A +S Y D + +NP+TG ++
Sbjct: 4 EVFEALSLLEKERGIPVDFMLDKIKKAILTACKSSYNGNDDAIINMNPDTGVFEVYLQKT 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEVE+ +ISL AR+ DP+ +G V L FGR+A Q+A+ +I Q +R+ ER
Sbjct: 64 VVEEVEDKGREISLLDAREIDPNTAVGEKVGVQLDTKQFGRIAAQTARNIIRQGIRDGER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGN--VIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
+ EF+ + E+++ TV+R++ + + +G ++ V+ + E + E LR GD VK Y
Sbjct: 124 GQMMQEFQSRHQELVTATVERIDPRSGAATLKIGKAEAVLPKSEQVGGEELREGDHVKVY 183
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ DV+ ++GP+ ++SRTHP + +LF EVPEIY+G V++K+VSR+ GSR KLAV+S D
Sbjct: 184 VVDVKETEKGPRAMISRTHPDLVKRLFETEVPEIYDGTVEIKSVSREAGSRTKLAVWSKD 243
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
++D VGAC+G RG+RV VV EL EKIDI+ +S D A F+ AL PA V V +D D
Sbjct: 244 PNVDAVGACIGARGARVGNVVNELGGEKIDIIEYSEDPAKFIAAALSPADVLSVEVDPDG 303
Query: 306 -GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
+V VP QLSLAIG +GQN RLA++LTGW IDI E E +
Sbjct: 304 MKACQVTVPDHQLSLAIGNKGQNARLAAKLTGWKIDIKPESGFYDPDAHKAAEAEEQE 361
>gi|94971244|ref|YP_593292.1| NusA antitermination factor [Candidatus Koribacter versatilis
Ellin345]
gi|94553294|gb|ABF43218.1| NusA antitermination factor [Candidatus Koribacter versatilis
Ellin345]
Length = 534
Score = 323 bits (828), Expect = 4e-86, Method: Composition-based stats.
Identities = 166/422 (39%), Positives = 251/422 (59%), Gaps = 8/422 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
EL + DA++ EK ID VV++ + D+I A R Y T + R ++ E+G I + + +
Sbjct: 4 ELYNVIDALSREKGIDPQVVVTAVEDAIVVATRKFYKTGENFRAVLDKESGQIRAYAVRQ 63
Query: 68 VV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV +E+E+ Q+ L+ AR+ DP+ ++GG + GR+A Q AKQVI QKVRE
Sbjct: 64 VVINEDELEDPATQVPLEEARELDPAAEVGGELLIEKKTDMLGRIAAQLAKQVIFQKVRE 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AERD Y E+ +VGEI++ T+KR E ++I D+G ++ + + E E+ G+RV+
Sbjct: 124 AERDTVYNEYIGRVGEIVNATMKRNEGPDLIWDIGKAEARMPKKEQSRLESFAIGERVRV 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
I V + +GPQV++SR P+ + LF EVPEIY+ V ++A++R+ G R K+AV S
Sbjct: 184 VITRVEKASKGPQVIVSRAAPELVSHLFQTEVPEIYDNTVVIRAIAREAGERTKIAVMSK 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D +D VGACVGM+G RVQ+++ ELR EKIDI+ + D+ TF AL+PA V++V + E
Sbjct: 244 DKDVDAVGACVGMKGMRVQSIIRELRGEKIDIIEYHEDAVTFAEKALQPAKVSRVTILES 303
Query: 305 -VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
+EVIV QLSLAIG++GQNVRLA++L GW IDI +EEE ++ + +
Sbjct: 304 GDKHLEVIVDDTQLSLAIGKKGQNVRLAAKLLGWKIDIKSEEEKRQEVEQQMSALVNPSI 363
Query: 364 QAI----NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+ ++ E I L A G VE LA + ++ + G +T +I Y
Sbjct: 364 TPLDKVPDLGEAIIEKLSAAGINSVEALADMTPEQLEEVPGIGPKTVDKIFVAVNAYFSA 423
Query: 420 ID 421
+D
Sbjct: 424 LD 425
>gi|126640415|ref|YP_001083399.1| transcription elongation factor NusA [Acinetobacter baumannii ATCC
17978]
Length = 418
Score = 322 bits (826), Expect = 9e-86, Method: Composition-based stats.
Identities = 169/423 (39%), Positives = 249/423 (58%), Gaps = 24/423 (5%)
Query: 93 IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG 152
IG V + ++FGR+A Q AKQVI+QK+REAER ++ KVGE+I G VK+
Sbjct: 18 IGDVRELEVESIEFGRIAAQIAKQVIVQKIREAERALVADAYESKVGELIYGEVKKQTKD 77
Query: 153 NVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKL 211
I+DLG++ + + R+E I +E LRP RV + +Y V RE RG Q+LLSR P+ ++ L
Sbjct: 78 GFIIDLGDNAEAYLAREEMIPKEILRPKQRVNAILYSVNREGRGAQLLLSRAKPEMLIAL 137
Query: 212 FHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRD 271
E+PEI I+++KA +R PG RAK+AV ++D IDPVGAC+GMRG+R+QAV EL
Sbjct: 138 MKKEIPEISEEIIEIKAAARQPGVRAKIAVKTNDHRIDPVGACIGMRGTRIQAVQQELNG 197
Query: 272 EKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIV-PKEQLSLAIGRRGQNVRL 330
E+ID+VVWS D A ++ +AL PA V+ +VLDED ++I +QL+ AIG +GQNVRL
Sbjct: 198 ERIDVVVWSDDPAQYIASALEPADVSGIVLDEDAKSADIIFATNDQLARAIGSQGQNVRL 257
Query: 331 ASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACV 390
AS LTG+ +D++ EEE +Q + + F+ ++++E +A LV GF +EE+A V
Sbjct: 258 ASDLTGYKLDMMLEEEYRARQQNEAQQYLDMFVSRLDIEEDLAMALVEMGFTSLEEIAYV 317
Query: 391 KISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVA 450
IE D E +Q RA+E + Q+ I+E S +L ++ G+ S+I +
Sbjct: 318 PAETFDEIE-LDAELVELLQSRAKEAALTDALKQQENIQE--PSADLLNMEGMTSEIAYS 374
Query: 451 LGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMG 510
L GI T++DLA + DD+ G ++ +I+ AR
Sbjct: 375 LAARGIITVDDLADQATDDISDIE-----------------GLGHEKAGQLIMKARES-- 415
Query: 511 WIE 513
W
Sbjct: 416 WFN 418
>gi|312972559|ref|ZP_07786732.1| transcription elongation protein nusA [Escherichia coli 1827-70]
gi|310332501|gb|EFP99714.1| transcription elongation protein nusA [Escherichia coli 1827-70]
Length = 335
Score = 322 bits (825), Expect = 9e-86, Method: Composition-based stats.
Identities = 143/352 (40%), Positives = 218/352 (61%), Gaps = 18/352 (5%)
Query: 164 VIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGI 223
+I R++ + REN RPGDRV+ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI +
Sbjct: 1 MILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEV 60
Query: 224 VQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283
+++KA +RDPGSRAK+AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W +
Sbjct: 61 IEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNP 120
Query: 284 ATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343
A FVINA+ PA V +V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T
Sbjct: 121 AQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMT 180
Query: 344 EEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403
++ Q + + F + +++DE A +LV EGF+ +EELA V + E+ IEG DE
Sbjct: 181 VDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDE 240
Query: 404 ETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLA 463
T ++ RA+ L I ++ + + +++L ++ G+D + L G+ T+EDLA
Sbjct: 241 PTVEALRERAKNALATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLA 300
Query: 464 GCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
+DDL G ++ ++I+ AR + W E
Sbjct: 301 EQGIDDLADIE-----------------GLTDEKAGALIMAAR-NICWFGDE 334
>gi|281355268|ref|ZP_06241762.1| NusA antitermination factor [Victivallis vadensis ATCC BAA-548]
gi|281318148|gb|EFB02168.1| NusA antitermination factor [Victivallis vadensis ATCC BAA-548]
Length = 414
Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats.
Identities = 157/410 (38%), Positives = 240/410 (58%), Gaps = 7/410 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL I + + E+ I RD ++ + +I AAR S+++V+I+P TG I + LE
Sbjct: 4 ELLTILEYIEQERGISRDSLIKALESAILTAARKSIHPASELKVKIDPVTGQIQAWATLE 63
Query: 68 VVEEVENYTC-QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
VVE EN TC Q+ + AR+R P + +G V + P +FGR+A Q+A+Q I+Q++R+AE
Sbjct: 64 VVE--ENPTCDQLVIARARERFPDVQLGEKVEWEVTPRNFGRIAAQTARQAIVQQLRKAE 121
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
++ EF D++G+IISGTV+R E GN+I+D ++G++ E I E PGD +++ +
Sbjct: 122 KENVQEEFADRIGQIISGTVRRFEAGNIIIDFQKAEGIMPSKEKIHDEQYMPGDIIRALL 181
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
V GP +++SR+ P+F+ +LF E+ EI++G+V++ ++R+ G R K++V S+D
Sbjct: 182 LRVDINTAGPSLIVSRSCPEFVTRLFEREIAEIHDGVVKIMGIAREAGKRTKISVMSTDP 241
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
+DPVGACVGMRG RV+ + EL +E+IDIV + D + NAL PA V V ++E
Sbjct: 242 RVDPVGACVGMRGQRVRNITNELGNERIDIVPYDADIRKYATNALLPAKVQSVEVNEAKH 301
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+ V V EQ LA G++ QNVRL S+L GW I+I EEE E+ + Q +
Sbjct: 302 ELIVRVTDEQSKLAFGKKAQNVRLCSKLIGWNINIRNEEERGAEAGHSIGEQLKIAAQKL 361
Query: 367 ----NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412
V E A LLV G+ V+ + + IEG D R
Sbjct: 362 AEAIGVSEATAGLLVNNGYVTVDGVKAADPEALLEIEGIDTAEMQNALER 411
>gi|170017453|ref|YP_001728372.1| transcription elongation factor [Leuconostoc citreum KM20]
gi|169804310|gb|ACA82928.1| Transcription elongation factor [Leuconostoc citreum KM20]
Length = 363
Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats.
Identities = 140/359 (38%), Positives = 221/359 (61%), Gaps = 4/359 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
EL+ DA+ E+ I+R +V+ + D+++ A + Y ++ + + G++++ ++
Sbjct: 4 ELVDALDALEAERGIERAIVIEALEDALKAAYKKQYNAEQNVEAVFDTKKGNVAIKQVKH 63
Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV E+ EN +ISL+ A + + + G + + P DFGR+A Q+AKQVI+QK+REA
Sbjct: 64 VVLDEDFENEDTEISLEDALAINRAYEPGDEIRFDVTPKDFGRMAAQAAKQVIMQKIREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVKS 184
R+ Y +F D EII+G V R + + + L GN + + ++ + E+ R GDR+K
Sbjct: 124 GREAIYNKFADYQDEIITGEVDRQDSRFLYMTLPGNQEAAMAPNDQMPNEHYRMGDRIKV 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ V +GPQ+ +SRT P + +LF EVPE+Y+G V++ ++SR+ G R+K+AV++
Sbjct: 184 LVNKVENNAKGPQIFVSRTAPDLVKRLFEQEVPEVYDGTVEIMSISREAGDRSKIAVYTH 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD-E 303
D +DPVGA VG RG RVQ+VV EL E +DIV W D A ++ NAL P+ VT V+ D E
Sbjct: 244 DPDLDPVGAMVGQRGGRVQSVVNELGGENMDIVEWVEDEAQYIANALNPSEVTDVIFDSE 303
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
+ + VIVP QLSLAIG++GQN RLA++LTG+ IDI +E E + + +
Sbjct: 304 NERAVTVIVPDNQLSLAIGKKGQNARLAARLTGFKIDIKSETEAAKDLGNQTVSSVEEN 362
>gi|239907795|ref|YP_002954536.1| transcription elongation protein NusA [Desulfovibrio magneticus
RS-1]
gi|239797661|dbj|BAH76650.1| transcription elongation protein NusA [Desulfovibrio magneticus
RS-1]
Length = 463
Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats.
Identities = 173/433 (39%), Positives = 272/433 (62%), Gaps = 8/433 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
EL + D ++ ++ IDRD+++ + ++++ + YG D+ V N E G+I +++
Sbjct: 1 MTELKKAIDQISKDRGIDRDLLVDTLEEAVRSSVIRKYGENLDVEVSYNDEQGEIEVYQF 60
Query: 66 LEVVEEVEN--YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
VVE+ + +I L A+ DP++ + + L D GR+A QSAKQVIIQ++R
Sbjct: 61 KVVVEDDDVADPAAEICLSDAKAIDPNVALEDEMGFKLAVEDLGRIAAQSAKQVIIQRMR 120
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183
+AE++ Y E+KD+ GEIISG ++R + I++LG ++ ++ ++E I RE + GDRV+
Sbjct: 121 DAEQEIIYEEYKDRKGEIISGIIQRRDRAGWIINLGRTEALLPKEEQIPRERYKRGDRVQ 180
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
++I +V RGPQ+++SRTH +M LF EVPE+ +G V++ AV+RDPGSRAK+AV S
Sbjct: 181 AFIIEVLPSGRGPQIIVSRTHGDYMKALFAREVPEVSDGTVKIVAVARDPGSRAKVAVIS 240
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
D +DPVGACVG+RGSR+Q +V ELR E+IDIVVW+P+ A++ NAL P+ VT++ +DE
Sbjct: 241 KDRDVDPVGACVGIRGSRIQNIVQELRGERIDIVVWNPEIASYAANALSPSRVTRISVDE 300
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
D +EV+V +QL+LAIGR+GQNV+LA++L GW IDI+TE R ++ N +F
Sbjct: 301 DEKSLEVVVTDDQLNLAIGRKGQNVKLAAKLLGWKIDIVTES-----RFREANASKKFLE 355
Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423
Q +V EI ++A GF +E+LA I +I G +++ A + + D
Sbjct: 356 QLASVAEIHVDNIIAAGFVSMEQLAEADDEAIDAIVGMTPSKRDDLRA-ALKLMGAFDKP 414
Query: 424 LQKKIRELGVSEE 436
+ E+
Sbjct: 415 APADDEDAPTDED 427
>gi|297588445|ref|ZP_06947088.1| transcription termination factor NusA [Finegoldia magna ATCC 53516]
gi|297573818|gb|EFH92539.1| transcription termination factor NusA [Finegoldia magna ATCC 53516]
Length = 424
Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats.
Identities = 145/348 (41%), Positives = 219/348 (62%), Gaps = 6/348 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG------TMSDIRVEINPETGD 59
+ ++ D + K I R+VV + ++ K+ + S + V IN + G
Sbjct: 2 NNDFIKALDELEKSKKIPREVVFDALEKALIKSYEKNFDYQDHENEESSVEVNINRDNGK 61
Query: 60 ISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119
++L+ + VVE VE+ +ISL+ A+ D+G V + P +FGR+A Q+A+ ++I
Sbjct: 62 VNLYAIKTVVENVEDKNTEISLEEAKTIKRKYDLGDKVKIEITPKNFGRIAAQTARNIVI 121
Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG 179
QK+++AERD Y EF D+ EII+GTV+RVE G V +DLG +G+I E I E P
Sbjct: 122 QKLKDAERDNIYNEFIDREKEIITGTVQRVERGIVYIDLGRVEGIIPVSEQIKSEEYTPN 181
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
R+K +I +V+ +G Q++LSRT + +LF +EVPEI +G V++ +V+R+PGSR K+
Sbjct: 182 KRLKLFIKEVKNTTKGAQIILSRTDNSLIKRLFELEVPEINDGTVEIFSVAREPGSRTKI 241
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AVFS+D ++DPVG+CVG G+RV+++V EL EK+DIV+WS D TF+ N+L P+ V
Sbjct: 242 AVFSNDENVDPVGSCVGFSGTRVKSIVDELNGEKLDIVIWSKDIKTFISNSLSPSEVIAT 301
Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347
+DE VIV ++QLSLAIG+ GQN RLA++LT W IDI +
Sbjct: 302 FIDEAQKICRVIVSEDQLSLAIGKEGQNARLAAKLTNWKIDIKGLNQY 349
>gi|226323231|ref|ZP_03798749.1| hypothetical protein COPCOM_01003 [Coprococcus comes ATCC 27758]
gi|225208421|gb|EEG90775.1| hypothetical protein COPCOM_01003 [Coprococcus comes ATCC 27758]
Length = 393
Score = 321 bits (824), Expect = 1e-85, Method: Composition-based stats.
Identities = 153/341 (44%), Positives = 226/341 (66%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
ELL+ + EK I RD ++ + +S+ A ++ +G +I+V ++ ET D +L +
Sbjct: 2 NTELLEALTILEEEKDISRDTLMDAIENSLINACKNHFGKADNIKVIMDKETCDYTLIQE 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVEEVE+ QISL A+ DPS +IG +V P+ FGR+A Q+AK +I+QK+RE
Sbjct: 62 KTVVEEVEDKVEQISLADAKMIDPSYEIGDIVQIPVESKSFGRIATQNAKNLILQKIREE 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y ++ +K +I++G V+R NV V+LG +D ++ +E + E P +R+K Y
Sbjct: 122 ERKVVYDQYFEKEKDIVTGVVQRYIGKNVSVNLGKADAILTENEQVKGEKFEPTERIKLY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ +V+ +GP++L+SRTHP+ + +LF EV E+ +GIV++K+++R+ GSR K+AV+S+D
Sbjct: 182 VVEVKNTTKGPKILVSRTHPELVKRLFEAEVTEVRDGIVEIKSIAREAGSRTKIAVWSND 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DPVGACVGM G+RV AVV ELR EKIDI+ WS + A + NAL PA V V+ D D
Sbjct: 242 PDVDPVGACVGMNGARVGAVVNELRGEKIDIINWSDNPAILIENALSPAKVISVMADPDE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346
VIVP QLSLAIG+ GQN RLA++LTG+ IDI E +
Sbjct: 302 RTASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKNETQ 342
>gi|182414628|ref|YP_001819694.1| NusA antitermination factor [Opitutus terrae PB90-1]
gi|177841842|gb|ACB76094.1| NusA antitermination factor [Opitutus terrae PB90-1]
Length = 408
Score = 321 bits (824), Expect = 1e-85, Method: Composition-based stats.
Identities = 143/406 (35%), Positives = 246/406 (60%), Gaps = 4/406 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + + + EK I R +++ +A++++ AA+ + ++++EIN + G + + LL+
Sbjct: 4 EILSVLEYMEKEKGIPRADMIATIANALKTAAQKGVNSGQELKIEINAKNGQLHAWCLLK 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+ V N +I ++ A+ P IG ++ + P GR+A Q+A+Q ++Q++R+ E+
Sbjct: 64 VVDSVSNPKTEIHVERAQALKPGAIIGEIIEKEIDPSTLGRIAAQTARQAVMQRLRQFEK 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
DR + +FKD+VG I++GTV+R E ++ +DLG ++ V+ E + E +PG+R++ +
Sbjct: 124 DRIFDDFKDQVGNIVTGTVRRRERNDLYIDLGKAEAVMPAKEQVPGEEYQPGERIRCLLL 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
++ RGP+++L+R P+F+ +LF +EV EI +G V+++A +R+PG R K+AV S+D
Sbjct: 184 NIESTPRGPEIILTRGSPKFVRRLFELEVTEIADGTVKIEAFAREPGYRTKIAVISTDPK 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVGACVG RG+RV+ +V EL EKIDI+ + +I A++PA+ ++ LDE R
Sbjct: 244 VDPVGACVGARGARVKTIVRELNGEKIDIIRYFASPREMIIEAMKPAVPREITLDEKNHR 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
I + V + L++AIGR+GQN RL S+L GW +DI EE ++A
Sbjct: 304 ILLKVATDDLAIAIGRKGQNARLTSRLIGWRLDI---EEFRAVGDDPRGNAIASLVKAFA 360
Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413
+D +A LV G V+ +++ GF E A +I GR
Sbjct: 361 LDATVAGRLVDMGINSPAAFEGVEANDLVD-AGFTEAEATDIIGRV 405
>gi|160947563|ref|ZP_02094730.1| hypothetical protein PEPMIC_01498 [Parvimonas micra ATCC 33270]
gi|158446697|gb|EDP23692.1| hypothetical protein PEPMIC_01498 [Parvimonas micra ATCC 33270]
Length = 378
Score = 321 bits (824), Expect = 1e-85, Method: Composition-based stats.
Identities = 140/359 (38%), Positives = 225/359 (62%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
+ L+ D + EK + ++++ + ++ K+ +G ++++ IN TG + LF +
Sbjct: 13 DFLRALDEIEREKGVSKEIIFDSLEKALLKSYEKNFGEYENVKININRTTGKVELFAIKT 72
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVE VE+ +ISL A+ +G VS L MDFGRVA Q+A+ ++IQK+++AER
Sbjct: 73 VVEVVEDNITEISLDDAKAISTKYSLGDEVSIKLKTMDFGRVAAQTARNIVIQKIKDAER 132
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y +F+DK E+ISG ++R++ N+ ++LG + ++ E I E R G+R+K Y+
Sbjct: 133 EVIYNDFQDKERELISGQIQRIDRNNLFINLGKLEAIVTPPEQIKSEVYRVGERLKFYVK 192
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
+V+ +G QVLLSR+ F++KLF +EVPEI +G V++++++R+PGSR K+AVFS +
Sbjct: 193 EVKNTPKGAQVLLSRSDVNFVLKLFELEVPEILDGTVEIQSIAREPGSRTKIAVFSKNDD 252
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVGACVG + SRV +++ EL+ EKIDI+V+S + ++ N+L P+ V V +E R
Sbjct: 253 VDPVGACVGYKRSRVSSIIKELKGEKIDIIVYSKNVKEYLSNSLSPSEVIAVFTNESENR 312
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
+IVP QLSLAIG+ GQN RLA++LT W IDI E+ + + E
Sbjct: 313 ARIIVPDSQLSLAIGKEGQNARLAAKLTNWRIDIKGLEKYKEDIENGLIEVGFDGEHEF 371
>gi|218509055|ref|ZP_03506933.1| transcription elongation factor NusA [Rhizobium etli Brasil 5]
Length = 266
Score = 321 bits (823), Expect = 2e-85, Method: Composition-based stats.
Identities = 201/264 (76%), Positives = 238/264 (90%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YGT S+IR +INP+TG+I
Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGTESNIRADINPKTGEIR 62
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
L RLLEVV++ E+Y+ QI L++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK
Sbjct: 63 LQRLLEVVDKAEDYSTQIPLELARDRNPDAALGDFIADPLPPMDFGRIAAQSAKQVIVQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAERDRQ+ EFKD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDR
Sbjct: 123 VREAERDRQFDEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENVRYGDR 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+QVK+V+RDPGSRAK+AV
Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQVKSVARDPGSRAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAV 265
S+DSSIDPVGACVGMRGSRVQAV
Sbjct: 243 ISNDSSIDPVGACVGMRGSRVQAV 266
>gi|313892549|ref|ZP_07826136.1| transcription termination factor NusA [Dialister microaerophilus
UPII 345-E]
gi|313118946|gb|EFR42151.1| transcription termination factor NusA [Dialister microaerophilus
UPII 345-E]
Length = 373
Score = 320 bits (821), Expect = 3e-85, Method: Composition-based stats.
Identities = 143/332 (43%), Positives = 216/332 (65%), Gaps = 4/332 (1%)
Query: 23 DRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV----ENYTCQ 78
D ++V + + + A + G+ + V N ETG+ ++ VVEE+ EN +
Sbjct: 19 DEEIVFNALEMVLLTAYKKETGSNAKSSVTFNRETGEYHIYAEKTVVEEIDPLSENAINE 78
Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138
+++ A+ D +++ G + + P +FGRVAVQ+AKQV+IQK+REAER Y EF +
Sbjct: 79 VTVAEAKKYDENLEAGDLFRIEVTPENFGRVAVQTAKQVMIQKLREAERGSIYDEFSGRE 138
Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQV 198
G+II+GTVK + V VDLG +G++ E I E+ P D++K YI +VR+ +GP++
Sbjct: 139 GDIITGTVKWSDDRTVYVDLGRVEGILPFSEQIEGEHFAPNDKIKCYISEVRKTTKGPEI 198
Query: 199 LLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMR 258
LSR P+ + +LF +EVPEIY+G++++KAV R+ GSR+K+AV++ D ++DP+GACVG
Sbjct: 199 FLSRKSPELLKRLFEVEVPEIYSGVIEIKAVVREAGSRSKIAVYTMDPTLDPIGACVGPE 258
Query: 259 GSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLS 318
G RV+ +V EL DEKIDIV W D A ++ NAL P+ V V + E+ V+VP QLS
Sbjct: 259 GQRVRNIVNELHDEKIDIVRWDEDPAVYIANALSPSKVISVSIWEEENSSYVVVPDYQLS 318
Query: 319 LAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350
LAIG+ GQN RLA++LT W IDI +E + + +
Sbjct: 319 LAIGKAGQNARLAAKLTNWKIDIKSESQAAED 350
>gi|304439999|ref|ZP_07399892.1| transcription termination factor NusA [Peptoniphilus duerdenii ATCC
BAA-1640]
gi|304371491|gb|EFM25104.1| transcription termination factor NusA [Peptoniphilus duerdenii ATCC
BAA-1640]
Length = 412
Score = 320 bits (821), Expect = 3e-85, Method: Composition-based stats.
Identities = 146/358 (40%), Positives = 233/358 (65%), Gaps = 1/358 (0%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFR 64
E + + + EK I +D+V + ++ + + +G + +I V+IN E G+I +F+
Sbjct: 2 NEEFILALNQLESEKGIKKDIVFEALEAALISSYKKNFGMSNQNIVVDINKENGNIKIFK 61
Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
+ VV+EVE+ +ISL+ A + +G +V + PM FGR+A Q+AKQV+IQK+++
Sbjct: 62 EMTVVDEVEDEDTEISLEDAEEISSKYKVGSIVRIEIDPMKFGRIAAQTAKQVVIQKIKD 121
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AE+D Y +F D+ GE+I+G V+R G V +DLG S+G++ +E I E+ G+R K
Sbjct: 122 AEKDIIYDDFIDREGELITGQVQRSSKGYVFIDLGKSEGILPPNEQIKGEDYSHGNRYKM 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
I +V++ +GPQ++LSR+HP + +LF +EVPEI++GIV+V +SR+ GSR K+AVFS
Sbjct: 182 IILEVKKTPKGPQIILSRSHPNLIKRLFELEVPEIHDGIVEVFNISREAGSRTKIAVFSK 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
+DP+GACVG +G+RV+A++ + +EKIDI++W D F+ NAL P+ V KV +D+
Sbjct: 242 SEDVDPLGACVGFKGARVKAILDSIGEEKIDIIIWDRDIDHFIANALSPSNVEKVFIDDS 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
+ V+VP QLSLAIG+ GQNVRLA++LT W IDI + + + + + +
Sbjct: 302 NKQALVVVPDYQLSLAIGKEGQNVRLAAKLTNWKIDIKSVSQFEEYLEAENMTEDELY 359
>gi|332638631|ref|ZP_08417494.1| transcription elongation factor NusA [Weissella cibaria KACC 11862]
Length = 379
Score = 320 bits (821), Expect = 3e-85, Method: Composition-based stats.
Identities = 146/375 (38%), Positives = 235/375 (62%), Gaps = 2/375 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
EL+ DA+ EK I +V++ + ++++KA Y ++ V+ + + G+I ++ +
Sbjct: 4 ELVNALDALEQEKGIKAEVLVEAIEEALKKAYEKNYDESENVEVQFDQKKGNIKVYSVKT 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEE++ QI+L+ A + + + +IG + + P DFGR+A Q+AKQ+I+QKVREAER
Sbjct: 64 VVEEIDEPYEQITLEEALELNKAYEIGDEIRFEVTPADFGRLAAQTAKQIIMQKVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVKSYI 186
Y +F E+I+G V+R + + + L GN + +++ + + E+ R GD++K +
Sbjct: 124 GVVYDKFIGYENEVITGEVERQDSRFLYIILPGNQEAAMKQGDQMPNESYRMGDKIKVLV 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
V+ EQ+GPQV +SRTHP+ + +LF EVPE+++G V++K+++R+ G R+K+AV+S +S
Sbjct: 184 SQVQNEQKGPQVFVSRTHPELVKRLFEAEVPEVFDGTVEIKSIAREAGDRSKIAVYSHNS 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE-DV 305
++D VG VG RG+RVQAVVTEL E +DIV W+ D A F+ NAL PA V V+ D +
Sbjct: 244 NLDAVGTMVGQRGARVQAVVTELSGENMDIVEWTEDPAQFIKNALNPAEVVDVIFDPTND 303
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
+ V+VP QLSLAIG+RGQN RLA++LTG+ IDI E E N+ +
Sbjct: 304 RAVTVLVPDYQLSLAIGKRGQNARLAARLTGFKIDIKPESERDAVVADMANKENESANAP 363
Query: 366 INVDEIIAHLLVAEG 380
+ ++ +E
Sbjct: 364 VIEADVADDFEASEE 378
>gi|329121255|ref|ZP_08249882.1| transcription termination factor NusA [Dialister micraerophilus DSM
19965]
gi|327470189|gb|EGF15652.1| transcription termination factor NusA [Dialister micraerophilus DSM
19965]
Length = 373
Score = 320 bits (820), Expect = 4e-85, Method: Composition-based stats.
Identities = 143/332 (43%), Positives = 216/332 (65%), Gaps = 4/332 (1%)
Query: 23 DRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV----ENYTCQ 78
D ++V + + + A + G+ + V N ETG+ ++ VVEE+ EN +
Sbjct: 19 DEEIVFNALEMVLLTAYKKETGSNAKSSVTFNRETGEYHIYAEKTVVEEIDPLSENAINE 78
Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138
+++ A+ D +++ G + + P +FGRVAVQ+AKQV+IQK+REAER Y EF +
Sbjct: 79 VTVAEAKKYDENLEAGDLFRIEVTPENFGRVAVQTAKQVMIQKLREAERGSIYDEFSGRE 138
Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQV 198
G+II+GTVK + V VDLG +G++ E I E+ P D++K YI +VR+ +GP++
Sbjct: 139 GDIITGTVKWSDDRTVYVDLGRVEGILPFSEQIEGEHFAPNDKIKCYISEVRKTTKGPEI 198
Query: 199 LLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMR 258
LSR P+ + +LF +EVPEIY+G++++KAV R+ GSR+K+AV++ D ++DP+GACVG
Sbjct: 199 FLSRKSPELLKRLFEVEVPEIYSGVIEIKAVVREAGSRSKIAVYTMDPTLDPIGACVGPE 258
Query: 259 GSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLS 318
G RV+ +V EL DEKIDIV W D A ++ NAL P+ V V + E+ V+VP QLS
Sbjct: 259 GQRVRNIVNELHDEKIDIVRWDEDPAVYIANALSPSKVISVSIWEEENSSYVVVPDYQLS 318
Query: 319 LAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350
LAIG+ GQN RLA++LT W IDI +E + + +
Sbjct: 319 LAIGKAGQNARLAAKLTNWKIDIKSESQAAED 350
>gi|328950381|ref|YP_004367716.1| NusA antitermination factor [Marinithermus hydrothermalis DSM
14884]
gi|328450705|gb|AEB11606.1| NusA antitermination factor [Marinithermus hydrothermalis DSM
14884]
Length = 397
Score = 320 bits (820), Expect = 4e-85, Method: Composition-based stats.
Identities = 147/374 (39%), Positives = 227/374 (60%), Gaps = 10/374 (2%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAA--RSLY-------GTMSDIRVEINPE 56
E ++ VA E+ + + ++ +++ KA + + G + V ++P+
Sbjct: 2 NKEFVEALQHVALERGVSPEELIQAFEEALAKAYVRQKGFRPKEVEEGKGPLVEVHLDPQ 61
Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116
G I + + VVE+VEN +I+L A DP + +G + P+ P +F R+AVQ+AKQ
Sbjct: 62 QGTIEVLEIKRVVEKVENPEREIALADALTYDPEVQVGEEMEFPVDPEEFSRIAVQTAKQ 121
Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISREN 175
++ Q+++EAER+R Y E+KDK GEI++G V RV+ GNV VDLG + ++ E I E
Sbjct: 122 ILTQRLKEAERNRVYEEYKDKKGEILTGQVTRVDNRGNVYVDLGRGEALMPPREQIPTER 181
Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235
PG R+K Y+ +V+R +GP +++SR H + + L EVPEI G+V+VKA++R+PGS
Sbjct: 182 YYPGQRIKVYLKEVQRSSKGPSLIVSRAHEELLRYLLKQEVPEIAEGVVEVKAIAREPGS 241
Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295
R+K+AV S + ++DP+GAC+G +G R+QAV EL E++DI+ WSP+ F+ NAL PA
Sbjct: 242 RSKVAVMSHNPNVDPIGACIGHKGQRIQAVSAELGRERVDIIQWSPNPREFIRNALSPAT 301
Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355
V + +D + G V V K+Q SLAIG+ GQNVRLAS+LTG+ ID E S +
Sbjct: 302 VGAIEIDPETGHAAVTVAKDQHSLAIGKAGQNVRLASKLTGYEIDFKEAEVVSDLDEALA 361
Query: 356 NERTQFFMQAINVD 369
+ I+ D
Sbjct: 362 KAAEKEEGVTISSD 375
>gi|319937395|ref|ZP_08011802.1| transcription termination-antitermination factor [Coprobacillus sp.
29_1]
gi|319807761|gb|EFW04354.1| transcription termination-antitermination factor [Coprobacillus sp.
29_1]
Length = 481
Score = 320 bits (819), Expect = 5e-85, Method: Composition-based stats.
Identities = 151/433 (34%), Positives = 251/433 (57%), Gaps = 10/433 (2%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLLE 67
+Q + + EK I+++VVL + ++++K+ + YG S IRV+IN G I L+ +
Sbjct: 6 FIQALELLESEKGIEKEVVLEALKEALEKSYKKNYGGPESIIRVDINENNGKIRLYEIKH 65
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV++V + ++SL+ A+ +P IG V + + P FGR+A KQ++ QK+REAE+
Sbjct: 66 VVDDVNDEDFELSLEEAQMINPKYQIGDDVVNEIDPEVFGRLAAVQTKQLLKQKIREAEK 125
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y EF DK +II+G V RVE I+++G + ++ ++ I E + G +K Y+
Sbjct: 126 ETLYNEFVDKKDDIITGIVDRVEERFAIINIGRTGALLPSNQQIPGETIYEGQHLKVYVS 185
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
DV R +G + +SRT P + +LF MEVPEIY+G V++K+VSR+ G R+K+AV++++ +
Sbjct: 186 DVERNTKGTHIGVSRTEPGLVKRLFEMEVPEIYDGTVEIKSVSREAGDRSKIAVYTTNEN 245
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DP+G+CVG +GSRV+ VV EL E IDIV W+ + F+ +AL P+ V V ++E+
Sbjct: 246 VDPIGSCVGPKGSRVRNVVNELNGEMIDIVEWNENPVIFISHALSPSEVVNVDINENDHS 305
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
VIVP QLSLAIG++GQN RLA +LTGW IDI + E + +
Sbjct: 306 ALVIVPDNQLSLAIGKKGQNARLAVRLTGWKIDIKSVSEAAREGIIYGQDAEFEKTFVEE 365
Query: 368 VDEII---AHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
+ + +++ E F ++E++ I+E +E E I + +E + +
Sbjct: 366 MTKDEPVIEDVMIEESFEELEDIIEEPITENIIVE---EPVVQPIVEEVKADVEVTEPEI 422
Query: 425 QKKIRELGVSEEL 437
+ + V ++
Sbjct: 423 ---LLDDEVENDM 432
>gi|254369910|ref|ZP_04985919.1| hypothetical protein FTAG_01671 [Francisella tularensis subsp.
holarctica FSC022]
gi|157122880|gb|EDO66997.1| hypothetical protein FTAG_01671 [Francisella tularensis subsp.
holarctica FSC022]
Length = 447
Score = 320 bits (819), Expect = 5e-85, Method: Composition-based stats.
Identities = 149/476 (31%), Positives = 275/476 (57%), Gaps = 38/476 (7%)
Query: 47 SDIRVEINPETGDISLFRLLEVV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPP 103
+I V+I+ TGD R+ +V E++ +Y+ ++ V +++ ++ G V+ +P+
Sbjct: 1 MNIEVKIDRVTGDFKADRVWHIVSEDEDLIDYSKELYEDVVQEKGYNVKAGDVMREPVEV 60
Query: 104 MDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-D 162
++GR+A AKQ++++K++ ER++ +++K+G+I+ G +KR Y ++VDLGN+ +
Sbjct: 61 KEYGRIAATMAKQILMKKIKNFEREKSARFYQNKIGDIVYGEIKRTTYEILVVDLGNNAE 120
Query: 163 GVIRRDETISRENLRPGDRVKSYIY--DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIY 220
G++ + + I+RE R GD++++ + + + ++LSR+ + LF +EVPE+
Sbjct: 121 GILPKKDLIARERYRVGDKIRACVEAVESDESGKPNTIMLSRSSNTMLKALFKLEVPEVE 180
Query: 221 NGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280
++ + V R+ G R+K+ V S+D IDP GACVG+RGSR+ ++++EL EK+D+++W+
Sbjct: 181 EELINIVNVVREHGFRSKVTVKSNDQRIDPCGACVGVRGSRIHSIMSELNGEKVDVILWN 240
Query: 281 PDSATFVINALRP---AIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337
D + IN+L P A + +V +DE+ ++++V +E LS AIG+ G NVRLAS L GW
Sbjct: 241 EDIVQYAINSLSPVDAADILEVNVDEETNSMDIVVKQESLSKAIGKNGVNVRLASSLIGW 300
Query: 338 TIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIAS 397
I+++++ E + + F++A+++D A +L+ EG +E+LA + +E+
Sbjct: 301 KINVLSDAEQEEKQ----MSIVEKFVEALDIDHNFALVLIEEGIETLEDLAYLDRAELLE 356
Query: 398 IEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIK 457
IEGFDEE E+Q RA+ + + +++L + G+ + L +N I
Sbjct: 357 IEGFDEEIVDELQERAKAVILSQA------LGGKKPAQDLLDMQGMSLDLAEQLAQNNIV 410
Query: 458 TMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
TMEDLA SVD+LL + ++Q ++I+ AR W E
Sbjct: 411 TMEDLAELSVDELLDI-----------------VDIDEEQATNLIMQARAP--WFE 447
>gi|296111951|ref|YP_003622333.1| transcription elongation factor NusA [Leuconostoc kimchii IMSNU
11154]
gi|295833483|gb|ADG41364.1| transcription elongation factor NusA [Leuconostoc kimchii IMSNU
11154]
Length = 363
Score = 320 bits (819), Expect = 5e-85, Method: Composition-based stats.
Identities = 140/359 (38%), Positives = 219/359 (61%), Gaps = 4/359 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
EL+ DA+ E+ I+R VV+ + D+++ A + Y ++ + + G++++ ++
Sbjct: 4 ELVDALDALEAERGIERTVVIEALEDALRAAYKKQYNAEQNVEAVFDTKKGNVAIKQVKS 63
Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV E+ EN +I+L+ A + + + G + + P DFGR+A Q+AKQVI+QK+REA
Sbjct: 64 VVLDEDFENEDTEIALQDALAINRAYEPGDEIRFDVTPKDFGRMAAQAAKQVIVQKMREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVKS 184
R+ Y +F D EII+G V R + + + L GN + + ++ + E+ R GDR+K
Sbjct: 124 GREAIYNKFADYQDEIITGEVDRQDARFLYLTLPGNQEAAMAPNDQMPNEHYRMGDRIKV 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ V +GPQ+ +SRT P + +LF EVPE+Y+G V++ +SR+ G R+K+AV++
Sbjct: 184 LVNKVENNAKGPQIFVSRTAPDLVKRLFEQEVPEVYDGTVEIMNISREAGDRSKIAVYTH 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D+ +DPVGA VG RG RVQAVV EL E +DIV W D A ++ NAL P+ V V+ D +
Sbjct: 244 DTDLDPVGAMVGQRGGRVQAVVNELGGENMDIVEWVEDEAQYIANALNPSEVADVIFDPE 303
Query: 305 -VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
+ VIVP QLSLAIG++GQN RLA++LTG+ IDI +E E + D +
Sbjct: 304 NERAVTVIVPDNQLSLAIGKKGQNARLAARLTGFKIDIKSESEAASALTNDVPTTDKTN 362
>gi|299139239|ref|ZP_07032415.1| transcription termination factor NusA [Acidobacterium sp. MP5ACTX8]
gi|298598919|gb|EFI55081.1| transcription termination factor NusA [Acidobacterium sp. MP5ACTX8]
Length = 544
Score = 319 bits (818), Expect = 6e-85, Method: Composition-based stats.
Identities = 170/438 (38%), Positives = 253/438 (57%), Gaps = 9/438 (2%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
L Q + ++ EK ID ++V+ + D+I A R Y T+ ++R E++ ETG+I + V
Sbjct: 5 LYQSIELLSREKGIDPEIVVGAVEDAIALATRKYYKTVENMRGEMDRETGEIRAYVFKTV 64
Query: 69 VEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VE VE+ Q++L+ AR+ P +++GG + GR+A Q AKQVI QKVREA
Sbjct: 65 VETPELVEDADNQLALEQARELAPEVEVGGELRFYKDTTPLGRIAAQMAKQVIFQKVREA 124
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ERD + E+ + GEI++ TVKR+E +VI DLG ++ + + E E +RV+
Sbjct: 125 ERDTVFNEYAHRAGEILTATVKRLEPMDVIFDLGKAEARMPKREQSRLEQFSVAERVRVV 184
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ V R +GPQV++SR P + LF EVPEIY+G V ++A++R+ G R K+AV S D
Sbjct: 185 LLRVDRAAKGPQVIVSRAAPALVQSLFQSEVPEIYDGTVSIRAIAREAGERTKIAVVSRD 244
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304
+DPVGACVGM+G RVQ+++ ELR EKIDI+ +S + TF AL+PA V++V + D
Sbjct: 245 KDVDPVGACVGMKGMRVQSIIRELRGEKIDIIEYSEEITTFAEKALQPAKVSRVSITDLA 304
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE----EEDSINRQKDFNERTQ 360
++EVIV QLSLAIG++GQNVRLA++L W IDI +E +E Q +
Sbjct: 305 EKQLEVIVDDTQLSLAIGKKGQNVRLAAKLLQWKIDIKSEEEKRQEVEQQMQAMTGGPST 364
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
Q + E + L+A G VE LA + E+ + G ++T +I R Y G
Sbjct: 365 PIEQVTELGESVMEKLIAAGITTVESLADMTAEELGEVPGIGDKTVEKIAVAVRHYF-GQ 423
Query: 421 DITLQKKIRELGVSEELC 438
+++ V L
Sbjct: 424 YEEGEERPVPAPVEPALL 441
>gi|187735458|ref|YP_001877570.1| NusA antitermination factor [Akkermansia muciniphila ATCC BAA-835]
gi|187425510|gb|ACD04789.1| NusA antitermination factor [Akkermansia muciniphila ATCC BAA-835]
Length = 431
Score = 319 bits (818), Expect = 6e-85, Method: Composition-based stats.
Identities = 154/428 (35%), Positives = 247/428 (57%), Gaps = 16/428 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY---GTMSDIRVEINPETGDISLFR 64
++ + D EK + R+ +L + + A R + G+++ +R EIN + G + +F
Sbjct: 4 DIKALIDYYEREKGLSREKILLALESAFLSAYRKMVPGSGSINYLRAEINVDKGKVRIFA 63
Query: 65 LLEVVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
LEVV + E + QI L +A D + + ++ + P FGR+AVQ+A+Q ++QK+
Sbjct: 64 DLEVVPDEEYSDKFNQIPLSLAVKLDKNAVLHDLLPTNITPKGFGRIAVQTARQTMLQKL 123
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182
+AE++ Y EFKD+ G++++GT++R E G++ VDLG +GV+ E + E+ GDR+
Sbjct: 124 LDAEKEMLYDEFKDRAGDLVTGTIRRFEKGDIFVDLGKFEGVMTSRERVPNEDYSVGDRM 183
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
+ Y+ +VR E RGP+V+LSR+HP + +LF EV EI + V++ ++R+ G R K+AV
Sbjct: 184 RFYVVEVRTEARGPEVILSRSHPNLVRRLFESEVVEIGDQTVEIHGIAREAGYRTKVAVI 243
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
S D +DPVGACVGMRG+RV+ +V EL +EK+DI+ W+ D TFV AL P ++ +D
Sbjct: 244 SHDDKVDPVGACVGMRGARVKNIVRELNNEKVDILEWTEDPVTFVREALSPVEPREITVD 303
Query: 303 EDVGRIEVIVPKE-QLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
E+ +I VIV + LS AIGRRGQN RL S+L GW + + + +++ +
Sbjct: 304 EEARKIFVIVQDDKDLSKAIGRRGQNARLTSRLMGWDVQVRVFDVQEAEKRQSQAAAEEV 363
Query: 362 FMQ----------AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411
Q + + E A LV G D+ L + S+IA G E A +I
Sbjct: 364 MRQCQAAAKTLSEQLEIPEETAMGLVTMGGTDLVALTGFEASDIAESMGIPAEEAAQILD 423
Query: 412 RAREYLEG 419
+AR+ +
Sbjct: 424 KARDLISQ 431
>gi|300173097|ref|YP_003772263.1| N utilization substance protein A [Leuconostoc gasicomitatum LMG
18811]
gi|299887476|emb|CBL91444.1| N utilization substance protein A [Leuconostoc gasicomitatum LMG
18811]
Length = 363
Score = 319 bits (818), Expect = 7e-85, Method: Composition-based stats.
Identities = 138/357 (38%), Positives = 222/357 (62%), Gaps = 4/357 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
EL+ DA+ E+ I+R++V++ + D+++ A + Y ++ + + G++++ ++
Sbjct: 4 ELVDALDALEAERGIEREIVVAALEDALRAAYKKQYNAEQNVEAVFDTKKGNVAIKQVKN 63
Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV ++ EN +ISL A + + + G + + P DFGR+A Q+AKQVI+QK+REA
Sbjct: 64 VVLDDDFENEDTEISLTDALVINRAYEAGDEIRFDVTPKDFGRMAAQAAKQVIVQKMREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVKS 184
R+ Y +F D EII+G V R + + + L GN + + ++ + E R GDR+K
Sbjct: 124 GREAIYNKFADYQDEIITGEVDRQDARFLYMTLPGNQEAAMAPNDQMPNERYRMGDRIKV 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ V +GPQ+ +SRT P + +LF EVPE+Y+G V++ +SR+ G R+K+AV++
Sbjct: 184 LVNKVENNAKGPQIFVSRTAPDLVKRLFEQEVPEVYDGTVEIMNISREAGDRSKIAVYTH 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D+ +DPVGA VG RG+RVQAVV EL E +DIV W D A ++ NAL P+ V V+ + +
Sbjct: 244 DTDLDPVGAMVGQRGARVQAVVNELGGENMDIVEWVEDEAQYIANALNPSEVADVIFNPE 303
Query: 305 -VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+ VIVP QLSLAIG++GQN RLA++LTG+ IDI +E E + + K + +
Sbjct: 304 NERAVTVIVPDNQLSLAIGKKGQNARLAARLTGFKIDIKSESEAANSLSKQSPLKAE 360
>gi|229824767|ref|ZP_04450836.1| hypothetical protein GCWU000182_00116 [Abiotrophia defectiva ATCC
49176]
gi|229791096|gb|EEP27210.1| hypothetical protein GCWU000182_00116 [Abiotrophia defectiva ATCC
49176]
Length = 360
Score = 319 bits (818), Expect = 7e-85, Method: Composition-based stats.
Identities = 145/342 (42%), Positives = 218/342 (63%)
Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64
N EL++ D + I ++++L + +S+ A + +G +I+V IN E G +S+
Sbjct: 15 NSKELIEALDQLEKTNDISKEIILEAVENSLLVACKDEFGKADNIKVTINRENGKVSVLS 74
Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VVE VE+ QISL A++ P+ G VV+ + P +FGR+A Q AKQV++QK+RE
Sbjct: 75 EKTVVETVEDPITQISLAEAKETFPNAVEGQVVNIVITPKNFGRIAAQKAKQVVVQKIRE 134
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
ER + ++ K +I++G V+R GN+ ++LG D ++ E + E DR+K
Sbjct: 135 EERKVLFNQYFAKEHDIVTGIVQRYTGGNISINLGKVDALLSESERVKTEKFSSTDRIKL 194
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
Y+ +V+ +GP++ +SRTHP + +LF EV EI +G V++K++SR+ GSR K+AV+S+
Sbjct: 195 YVVEVKDTSKGPRITVSRTHPDLVKRLFESEVTEIKDGTVEIKSISREAGSRTKIAVYSN 254
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
+ +D VGACVG+ SRV+AVV ELR EKIDIVVWS D F++NAL PA V D +
Sbjct: 255 NPEVDAVGACVGLNRSRVEAVVDELRGEKIDIVVWSEDPRVFIMNALSPARAISVEADPE 314
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346
+VIV QLSLAIG+ GQN RLA++LTG+ IDI +E +
Sbjct: 315 EKTAKVIVADSQLSLAIGKEGQNARLAARLTGYKIDIKSESQ 356
>gi|313673261|ref|YP_004051372.1| nusa antitermination factor [Calditerrivibrio nitroreducens DSM
19672]
gi|312940017|gb|ADR19209.1| NusA antitermination factor [Calditerrivibrio nitroreducens DSM
19672]
Length = 428
Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats.
Identities = 159/425 (37%), Positives = 252/425 (59%), Gaps = 9/425 (2%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L++AD + EK R ++ + + D+I A G + VEI+ E ++ E
Sbjct: 4 EILKVADEIVREKGFSRKIISNALRDAIYTALVKKLGKYGEPVVEIDLEKNIFNISVPKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVE+V++ +I L A D +G V+ P+ + GR + K + +K+R+AE+
Sbjct: 64 VVEDVDSVWHEILLDDALKIDKDAYLGKVIMVPVTIEEIGRQLATTVKTRLFEKLRDAEK 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
D Y EF+ KVGEII+G V + + V V +G ++ ++ + E I + GD +++ +
Sbjct: 124 DIVYSEFQGKVGEIITGIVLKSDKEGVTVSIGKTEAILPKKEMIPGDYYTRGDYIRALLL 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
+++ + PQ++LSRTHPQF+ KLF E+PE+++G+V+VK+V+R+PG RAK+AV+S+ S+
Sbjct: 184 EIKLIKGWPQLVLSRTHPQFLKKLFESEIPEVFDGLVEVKSVAREPGDRAKVAVYSTSSN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
IDPVGAC+G++G R+ A+ EL+ EKID++ WSPD FV ++ PA V + ED
Sbjct: 244 IDPVGACIGLKGVRINAISNELKGEKIDVIQWSPDPVKFVCASISPAEVLLTNIFEDEST 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA-- 365
IEV+VP +QLSLAIG+RGQNV+LAS LTGW +DI+ E E R++ E+ Q +
Sbjct: 304 IEVVVPDDQLSLAIGKRGQNVKLASILTGWKLDILKESEYKELRKQRLIEQEQEMKEFYM 363
Query: 366 -------INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
+ + + LVA G D+E+LA + I+ I E A+ I A +YL
Sbjct: 364 IYSLDNLTVLTDEMISKLVAAGVTDLEKLADTDVDRISEILNISHEDAINILNAALDYLA 423
Query: 419 GIDIT 423
+
Sbjct: 424 SVLEE 428
>gi|289522943|ref|ZP_06439797.1| transcription termination factor NusA [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289503486|gb|EFD24650.1| transcription termination factor NusA [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 375
Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats.
Identities = 144/368 (39%), Positives = 230/368 (62%), Gaps = 5/368 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
+ ++ + EK + +V++S + ++ A + GT S++ VE++ + G I ++ + E
Sbjct: 9 DFMRALKQIETEKGLPLEVIISSIEAALVSAYKKYKGTNSNVEVELDSDNGIIKIYEVKE 68
Query: 68 VVEEVENYTCQISLKVARDRD-PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
VV+ V N +IS++ A+ G ++ + P DFGR+AVQ+A+QVI Q++++AE
Sbjct: 69 VVDTVRNPAFEISVEEAKSMGLDDAKEGEMIKVEVSPRDFGRIAVQTARQVITQRLKDAE 128
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSY 185
R Y +F KVGEI++G V R E G +V +G D ++ R+E I E+ RPGDR K Y
Sbjct: 129 RQIIYNDFSGKVGEIVTGVVFRDEGGQALVRIGDKIDAMLPREERIPTESYRPGDRKKFY 188
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ DVR+ +GP+++LSR+HP + L +EVPEI G++ +K ++R+ G R+K+AV + D
Sbjct: 189 VLDVRKTSKGPRIVLSRSHPGLLKSLLELEVPEIKEGVIDIKNIAREAGVRSKVAVTTLD 248
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV--VLDE 303
++DPVGAC+G +G+R++A+ EL E+ID+++WS D ++ NAL PA V K+ LDE
Sbjct: 249 PNVDPVGACIGTKGNRIKAISDELAGERIDVIIWSNDPIAYIKNALSPAKVVKIEPRLDE 308
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
D + V V +QLSLAIG+ GQNVRLA++LTGW IDI E D + +D E
Sbjct: 309 D-KAVNVYVRPDQLSLAIGKGGQNVRLAAKLTGWKIDINVMEPDRLPTLQDLFEDIIKGE 367
Query: 364 QAINVDEI 371
++
Sbjct: 368 LPKEWEKE 375
>gi|325479444|gb|EGC82540.1| transcription termination factor NusA [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 425
Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats.
Identities = 141/352 (40%), Positives = 228/352 (64%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+ + D + EK +D+ +L + ++ K+ + Y ++ V I+ E+G I +F L
Sbjct: 2 NNDFMLALDELCKEKGLDKATILDALKKALIKSYQKNYDNQENVDVIIDEESGKIEVFAL 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVEEVE+ +IS+K A+ + + D+G VV L P +FGRVA Q+A+ ++IQK+R+A
Sbjct: 62 KNVVEEVEDSISEISIKDAKKVNSTYDLGDVVRIELTPKNFGRVAAQTARNIVIQKIRDA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
+RD Y E+ ++ E+I+G ++R + N+ V+L +GV+ E + EN P +R+K
Sbjct: 122 QRDSLYGEYIERSNEMITGLIQRADNYNLYVNLDKIEGVVPLKEQVPTENYAPNERMKFL 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I +VR + PQ++LSR+ + +LF +EVPEI G++++ +++R+ GSR K+AVFS+D
Sbjct: 182 IKEVRNSSKDPQIILSRSSQDLITRLFELEVPEITEGVIEIYSIAREAGSRTKMAVFSND 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+ID VGAC+G +G+RV ++V EL+ EKIDI+ + D F+ NAL PA + V+++E
Sbjct: 242 ETIDAVGACIGFKGARVNSIVEELQGEKIDIINFDKDIKVFISNALSPADIIDVIVNEKN 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
+ V+V +QLSLAIG+ GQN RLA++LTGW IDI ++EE Q D +E
Sbjct: 302 KQSLVVVSSDQLSLAIGKEGQNARLAARLTGWKIDIKSKEEFDTLSQDDIDE 353
>gi|294055327|ref|YP_003548985.1| transcription termination factor NusA [Coraliomargarita akajimensis
DSM 45221]
gi|293614660|gb|ADE54815.1| transcription termination factor NusA [Coraliomargarita akajimensis
DSM 45221]
Length = 416
Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats.
Identities = 153/414 (36%), Positives = 245/414 (59%), Gaps = 1/414 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + + + EK IDR +++ ++ +I AA+ DIRVEINP TG + + LE
Sbjct: 4 EILSVLEYMEKEKGIDRADMITAISAAIASAAQKGVSAGQDIRVEINPRTGALKAWSRLE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+ V + +I ++ AR DP +IG V+ + P GR+A Q+A+Q I+Q++R+ E+
Sbjct: 64 VVDSVSDQALEIHIEKARQIDPDAEIGQVIEKEMDPAYLGRIAAQTARQAIMQRIRQFEK 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
DR Y +FKD VG+I++GTV+R E G++I+DLG ++ ++ E + E+ GD ++ +
Sbjct: 124 DRIYDDFKDTVGDIVTGTVRRRERGDLIIDLGKAEAILPPRERVPGEDYSIGDSIRCLLL 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
+ + RGP ++LSR++ F+ +LF +EV EI +G V ++A++R+ G R K+AV S+D
Sbjct: 184 KIEQTNRGPDIILSRSNLNFVRRLFELEVTEIADGTVTIEAMAREAGYRTKIAVHSADPK 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVGACVG RG+RV+ +V EL EKIDI+ D + ALRPA+ V L++ R
Sbjct: 244 VDPVGACVGARGARVKTIVRELGGEKIDIIRHFTDPVQMLEEALRPAVPKNVRLNDVERR 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
+ V ++ LS+AIGRRG N +L S+L GW +DI EE+++I + + Q
Sbjct: 304 MHFEVAEDDLSIAIGRRGFNAKLTSRLLGWKLDIGKEEKEAIGFDEKIAKAIQGITVIPG 363
Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
++ IA LV G E V +++ GF A +I + Y +
Sbjct: 364 IEPAIAQRLVGIGLISPEAFEGVAANDLVD-AGFTAAEADDIISKVAAYAQSNA 416
>gi|326692688|ref|ZP_08229693.1| transcription elongation factor NusA [Leuconostoc argentinum KCTC
3773]
Length = 365
Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats.
Identities = 140/362 (38%), Positives = 221/362 (61%), Gaps = 4/362 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
EL+ DA+ E+ I+R VV+ + D+++ A + Y ++ + + G++++ ++
Sbjct: 4 ELVDALDALEAERGIERAVVIEALEDALRAAYKKQYNAEQNVEAVFDTKKGNVAIKQVKV 63
Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV E+ EN +I L+ A + + + G + + P DFGR+A Q+AKQVI+QK+REA
Sbjct: 64 VVLDEDFENEDTEIPLEDALAINRAYEPGDEIRFDVTPKDFGRMAAQAAKQVIVQKMREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVKS 184
R+ Y +F D EII+G V R + + + L GN + + + + E+ R GDR+K
Sbjct: 124 SREAIYNKFADYQDEIITGEVDRQDTRFLYLTLPGNQEAAMAPADQMPNEHYRMGDRIKV 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ V +GPQ+ +SRT P + +LF EVPE+Y+G V++ ++SR+ G R+K+AV++
Sbjct: 184 LVNKVENNAKGPQIFVSRTAPDLVKRLFEQEVPEVYDGTVEIMSISREAGDRSKIAVYTH 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D+ +DPVGA VG RG+RVQAVV EL E +DIV W D A ++ NAL P+ VT V+ D +
Sbjct: 244 DADLDPVGAMVGQRGARVQAVVNELGGENMDIVEWVEDEAQYIANALNPSEVTDVIFDPE 303
Query: 305 V-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
+ VIVP QLSLAIG++GQN RLA++LTG+ IDI +E E + + + +
Sbjct: 304 NDRAVTVIVPDNQLSLAIGKKGQNARLAARLTGFKIDIKSESEAANSLVAEAPVVVEDET 363
Query: 364 QA 365
Sbjct: 364 NE 365
>gi|227486447|ref|ZP_03916763.1| transcription termination factor NusA [Anaerococcus lactolyticus
ATCC 51172]
gi|227235628|gb|EEI85643.1| transcription termination factor NusA [Anaerococcus lactolyticus
ATCC 51172]
Length = 407
Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats.
Identities = 143/402 (35%), Positives = 248/402 (61%), Gaps = 5/402 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+ + D + +K+++++V+L + ++ K+ + Y ++ V I+ ETG+I ++ L
Sbjct: 2 NKDFMLALDELCKDKNVEKEVILDALEKALVKSYQKNYDNQENVDVTIDHETGEIGVYAL 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
EVV++VE+ QI+LK A+D D S+ +G L P +FGRVA Q+A+ ++IQK+R+A
Sbjct: 62 KEVVDKVEDPINQINLKDAKDLDASLAVGDTARIKLVPKNFGRVAAQTARNIVIQKIRDA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
+R+ + ++ D+ E+I+G ++RV+ NV V+L +G++ E + E+ P +R+K
Sbjct: 122 QRESLFGDYLDRENELITGLIQRVDKYNVYVNLDRIEGIVPLKEQVPTESYIPNERMKFL 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I +VR + PQ++LSR+ + +LF +EVPEI +G++++ +++R+ GSR K+AVFS+D
Sbjct: 182 IKEVRNSGKDPQIVLSRSSENLVTRLFELEVPEITDGVIEIYSIAREAGSRTKMAVFSND 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+ID VGAC+G +G+RV ++V L+ EKIDI+ +S D +F+ NAL PA + +V ++E
Sbjct: 242 ETIDAVGACIGYKGARVNSIVDSLQGEKIDIINYSKDIESFISNALSPADIIEVYVNERN 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
+ V+V +QLSLAIG+ GQN RLA++LTGW IDI S ++ + +
Sbjct: 302 KQSLVVVEDDQLSLAIGKEGQNARLAARLTGWKIDI-----KSKLEFDSLSQEEIDEILS 356
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV 407
IN +E+ + + +LA S+ E DE+
Sbjct: 357 INEEEVSDEKSTDDKDLEAYDLAEENASDDKDEEISDEDKEE 398
>gi|182417570|ref|ZP_02948895.1| transcription termination factor NusA [Clostridium butyricum 5521]
gi|237667179|ref|ZP_04527163.1| transcription termination factor NusA [Clostridium butyricum E4
str. BoNT E BL5262]
gi|182378583|gb|EDT76111.1| transcription termination factor NusA [Clostridium butyricum 5521]
gi|237655527|gb|EEP53083.1| transcription termination factor NusA [Clostridium butyricum E4
str. BoNT E BL5262]
Length = 384
Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats.
Identities = 147/384 (38%), Positives = 236/384 (61%), Gaps = 8/384 (2%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGT----MSDIRVEINPETGDIS 61
E + + EK I D++ + + D++ A + Y +++V I+ ETG+I
Sbjct: 2 NEEFVGALRELVKEKGICEDLIFTTIQDALVAAYKKNYANVNTNAQNVKVNIDRETGEIR 61
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
++ VV+EV + +IS++ A+ P ++ +V + P +FGRVA Q AKQV+ Q+
Sbjct: 62 VYAQKVVVDEVYDDVTEISIEEAKVVSPKYEVDDIVDLEVTPKNFGRVAAQLAKQVVTQR 121
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
++EAER+ Y E+K++ +II+GT+ R + G V V+LG +GVI +E I E + ++
Sbjct: 122 IKEAERNIIYDEYKEQEFDIITGTILRKDKGMVFVNLGKLEGVIGPNEQIPGEEYKFNEK 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K YI +V+ +GPQ+ +SRTHP + +LF +EVPEI+ G+V+VK++SR+ GSR+K+AV
Sbjct: 182 LKLYIVEVKNGSKGPQIHVSRTHPGLVKRLFELEVPEIFEGVVEVKSISREAGSRSKIAV 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
+S+D +D +GACVG +G RVQ +V EL++EKIDI+ WS D A F+ N+L PA V V +
Sbjct: 242 YSNDEEVDAMGACVGPKGVRVQNIVNELKNEKIDIIKWSKDPAEFIANSLSPAKVLSVEV 301
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
DE+ +V+V QLSLAIG+ GQNVRLA++LT W IDI ++ + E +
Sbjct: 302 DEENKTAKVVVDDNQLSLAIGKEGQNVRLAAKLTNWKIDIKSKSQKDALDA----EEEKL 357
Query: 362 FMQAINVDEIIAHLLVAEGFADVE 385
+ +D L + ++
Sbjct: 358 VNTEVEIDNEDTTDLSDLDISTID 381
>gi|325661695|ref|ZP_08150318.1| transcription termination factor NusA [Lachnospiraceae bacterium
4_1_37FAA]
gi|331084712|ref|ZP_08333800.1| transcription termination factor NusA [Lachnospiraceae bacterium
9_1_43BFAA]
gi|325471948|gb|EGC75163.1| transcription termination factor NusA [Lachnospiraceae bacterium
4_1_37FAA]
gi|330410806|gb|EGG90228.1| transcription termination factor NusA [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 377
Score = 317 bits (812), Expect = 3e-84, Method: Composition-based stats.
Identities = 150/376 (39%), Positives = 232/376 (61%), Gaps = 1/376 (0%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
ELL+ + EK I ++ +L + +S+ A ++ +G +I++ +N ET D S+F
Sbjct: 2 NTELLEALTILEEEKDISKETMLDAIENSLMNACKNHFGKADNIKIIMNRETCDYSVFAE 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVEEVE+ +ISL A+ D ++G +V P+ +FGR+A Q+AK +I+QK+RE
Sbjct: 62 KVVVEEVEDEVMEISLADAKMIDSKFELGDIVQIPVESKEFGRIATQNAKNLILQKIREE 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y ++ +K +I++G V+R NV ++LG +D ++ +E + E +P +R+K Y
Sbjct: 122 ERKVVYDQYFEKEKDIVTGIVQRYVGKNVSINLGKADAMLTENEQVKGEVFKPTERIKLY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ +V+ +GP++L+SRTHP+ + +LF EV E+ +G V++K++SR+ GSR K+AV+S+D
Sbjct: 182 VVEVKNTTKGPKILVSRTHPELVKRLFESEVAEVKDGTVEIKSISREAGSRTKIAVWSND 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DPVGACVGM G+RV A+V ELR EKIDI+ WS + A + NAL PA V V+ D D
Sbjct: 242 PDVDPVGACVGMNGARVNAIVNELRGEKIDIINWSENPAILIENALSPAKVISVMADPDE 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE-DSINRQKDFNERTQFFMQ 364
VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + +
Sbjct: 302 KTASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQAIEAGDLPENYMDMAMEAA 361
Query: 365 AINVDEIIAHLLVAEG 380
++ E L E
Sbjct: 362 EVDEPEQTEDYLADEE 377
>gi|169824466|ref|YP_001692077.1| transcription terminator [Finegoldia magna ATCC 29328]
gi|167831271|dbj|BAG08187.1| transcription terminator [Finegoldia magna ATCC 29328]
Length = 422
Score = 316 bits (811), Expect = 4e-84, Method: Composition-based stats.
Identities = 144/348 (41%), Positives = 219/348 (62%), Gaps = 6/348 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG------TMSDIRVEINPETGD 59
+ ++ D + K I R+VV + ++ K+ + S + V IN + G
Sbjct: 2 NNDFIKALDELEKSKKIPREVVFDALEKALIKSYEKNFDYQDHENEESSVEVNINRDNGK 61
Query: 60 ISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119
++L+ + VVE VE+ +ISL+ A+ D+G + + P +FGR+A Q+A+ ++I
Sbjct: 62 VNLYAIKTVVESVEDKNTEISLEEAKAIKHKYDLGDKIKIEITPKNFGRIAAQTARNIVI 121
Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG 179
QK+++AERD Y EF D+ EII+GTV+RVE G V +DLG +G+I E I E P
Sbjct: 122 QKLKDAERDNIYNEFIDREKEIITGTVQRVERGIVYIDLGRVEGIIPVSEQIKTEEYIPN 181
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
R+K +I +V+ +G Q++LSRT + +LF +EVPEI +G V++ +V+R+PGSR K+
Sbjct: 182 KRLKLFIKEVKNTTKGAQIILSRTDNSLIKRLFELEVPEINDGTVEIFSVAREPGSRTKI 241
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AVFS+D ++DPVG+CVG G+RV+++V EL EK+DIV+WS D TF+ N+L P+ V
Sbjct: 242 AVFSNDENVDPVGSCVGFSGTRVKSIVDELNGEKLDIVIWSKDIKTFISNSLSPSEVIAT 301
Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347
+DE VIV ++QLSLAIG+ GQN RLA++LT W IDI +
Sbjct: 302 FIDEAQKICRVIVSEDQLSLAIGKEGQNARLAAKLTNWKIDIKGLNQY 349
>gi|227872001|ref|ZP_03990386.1| transcription elongation factor NusA [Oribacterium sinus F0268]
gi|227842144|gb|EEJ52389.1| transcription elongation factor NusA [Oribacterium sinus F0268]
Length = 390
Score = 316 bits (810), Expect = 5e-84, Method: Composition-based stats.
Identities = 142/364 (39%), Positives = 214/364 (58%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
EL D + EK I + ++ + S+Q A ++ +G+ ++ V +NP+T S+
Sbjct: 2 NEELRLALDMLEKEKKISKQALIEAIELSLQTACKNHFGSADNVHVSMNPDTAVFSVLAD 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVE+V + + +ISL+ A + DPS +G VV P+ F R+A Q+AK VI+QK+RE
Sbjct: 62 KTVVEKVGDKSTEISLEEAHEMDPSYTLGDVVQVPIDSKSFSRIAAQNAKGVIVQKIREE 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER + E+ +I + V++ +I++LG DG + E I ENL PG R K Y
Sbjct: 122 ERKNLFEEYYAMSKKIFTALVEKNTGRALIMNLGKVDGYLAEAEQIPGENLTPGQRAKVY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ +V+ +GP+++LSRTHP+ + KLF EV E+ GIV++K+++R+ GSR K+AV S++
Sbjct: 182 VVEVKDSPKGPKLMLSRTHPELVRKLFFEEVSELREGIVEIKSIAREAGSRTKMAVISNE 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+D VGACVG+ G+RV +V ELR EKIDI+ + + A + N+L PA V V+ D D
Sbjct: 242 EDVDAVGACVGLNGNRVNTIVEELRGEKIDIINYDENPAYLIENSLSPAKVIAVIADPDN 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
VIVP QLSLAIG+ GQN RLA++LT + IDI +E + D
Sbjct: 302 KEALVIVPDNQLSLAIGKEGQNARLAAKLTNYKIDIKSESQAQEQGIFDEMGIDYHGESL 361
Query: 366 INVD 369
D
Sbjct: 362 EEED 365
>gi|261367202|ref|ZP_05980085.1| transcription termination factor NusA [Subdoligranulum variabile
DSM 15176]
gi|282570800|gb|EFB76335.1| transcription termination factor NusA [Subdoligranulum variabile
DSM 15176]
Length = 357
Score = 316 bits (810), Expect = 6e-84, Method: Composition-based stats.
Identities = 146/352 (41%), Positives = 210/352 (59%), Gaps = 6/352 (1%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGD 59
M +AN E A+ E+ + D ++ + +I A + Y ++ V+I+PE G
Sbjct: 1 MATANN-EFFDALAALEKERGLPEDYLIEKIKAAIVIAVKKDYEVEDDNVVVDIDPEIGA 59
Query: 60 ISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119
L ++VEEVEN Q+SL+ A+ S +G + L +FGR+A Q+AK VI
Sbjct: 60 FRASLLRDIVEEVENPHTQVSLEEAQKVRKSYKVGQRMVTQLKTKEFGRIAAQTAKHVIR 119
Query: 120 QKVREAERDRQYLEFKDKVGEIISGTV--KRVEYGNVIVDLGNS-DGVIRRDETISRENL 176
Q +RE ER+ Q E + + E+I+ TV E GNV++DLG V+ R+E + E
Sbjct: 120 QGLREGERNLQCSEMQSRAHELITATVVSIDPERGNVVLDLGKGGSAVLPRNEQVPGETF 179
Query: 177 RPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236
G+ V+ Y+ DV RGP+V +SRTHP + ++F +EVPEIY+G V++KA++R+ G+R
Sbjct: 180 HEGETVQVYVVDVLATDRGPRVTISRTHPGLVKRMFELEVPEIYDGTVEIKAIAREAGAR 239
Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296
KLAV+S + +DPVGAC+G RG+RV+ +V EL EKID++ WS D F+ AL PA V
Sbjct: 240 TKLAVWSKNPDVDPVGACIGARGARVEKIVQELGGEKIDVIRWSEDITEFISAALSPAKV 299
Query: 297 TKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347
KV L + V VP QLSLAIG +GQNVRL + LTG+ IDI E
Sbjct: 300 VKVELLPGETKSCRVTVPDHQLSLAIGNKGQNVRLCAHLTGYNIDIRPESGY 351
>gi|303233744|ref|ZP_07320398.1| transcription termination factor NusA [Finegoldia magna BVS033A4]
gi|302495178|gb|EFL54930.1| transcription termination factor NusA [Finegoldia magna BVS033A4]
Length = 422
Score = 316 bits (809), Expect = 7e-84, Method: Composition-based stats.
Identities = 155/422 (36%), Positives = 237/422 (56%), Gaps = 8/422 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG------TMSDIRVEINPETGD 59
+ ++ D + K I R+VV + ++ K+ + S + V IN + G
Sbjct: 2 NNDFIKALDELEKSKKIPREVVFDALEKALIKSYEKNFDYQDHENEESSVEVNINRDNGK 61
Query: 60 ISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119
++L+ + VVE VE+ +ISL+ A+ D+G + + P +FGR+A Q+A+ ++I
Sbjct: 62 VNLYAIKTVVESVEDKNTEISLEEAKAIKHKYDLGDKIKIEITPKNFGRIAAQTARNIVI 121
Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG 179
QK+++AERD Y EF D+ EII+GTV+RVE G V +DLG +G+I E I E P
Sbjct: 122 QKLKDAERDNIYNEFIDREKEIITGTVQRVERGIVYIDLGRVEGIIPVSEQIKTEEYIPN 181
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
R+K +I +V+ +G Q++LSRT + +LF +EVPEI +G V++ +V+R+PGSR K+
Sbjct: 182 KRLKLFIKEVKNTTKGAQIILSRTDNSLIKRLFELEVPEINDGTVEIFSVAREPGSRTKI 241
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AVFS+D ++DPVG+CVG G+RV+++V EL EK+DIV+WS D TF+ N+L P+ V
Sbjct: 242 AVFSNDENVDPVGSCVGFSGTRVKSIVDELNGEKLDIVIWSKDIKTFISNSLSPSEVIAT 301
Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
+DE VIV ++QLSLAIG+ GQN RLA++LT W IDI D +
Sbjct: 302 FIDEGQKICRVIVSEDQLSLAIGKEGQNARLAAKLTNWKIDIKGLN--QYLEAYDDGILS 359
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
F + E + AE + E S+ E D + + E E
Sbjct: 360 VEFDGEADFLEANGIEVRAEDKDKIFEKIKYHESDDKEEEMDDIKDDNSLVSDNNEIAED 419
Query: 420 ID 421
+
Sbjct: 420 SE 421
>gi|254669623|emb|CBA03666.1| N utilization substance protein A [Neisseria meningitidis alpha153]
Length = 358
Score = 315 bits (808), Expect = 8e-84, Method: Composition-based stats.
Identities = 164/379 (43%), Positives = 244/379 (64%), Gaps = 25/379 (6%)
Query: 142 ISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR--GPQ 197
+SGTVKRVE +IV++ G D +I RD+ I REN R GDR+++ V Q
Sbjct: 1 MSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGDRIRALFLRVEEIGNTGRKQ 60
Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGM 257
V+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK+AV ++D IDP G C+G+
Sbjct: 61 VILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAKVAVKANDQRIDPQGTCIGV 120
Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQL 317
RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V+++V+DED ++VIV ++QL
Sbjct: 121 RGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSRIVIDEDKHAVDVIVAEDQL 180
Query: 318 SLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLV 377
+LAIGR GQNVRLAS LTGW ++I+T E + + FM +NVDE A +LV
Sbjct: 181 ALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAIRRLFMDHLNVDEETADVLV 240
Query: 378 AEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEEL 437
EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + + I ++K+ E VS+++
Sbjct: 241 QEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAILTMAIAAEEKLGE--VSDDM 298
Query: 438 CSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQ 497
++ GID+ + +L E GI T +DLA +VD+L+ + G ++
Sbjct: 299 RNLEGIDADMLRSLAEAGITTRDDLAELAVDELIEIT-----------------GVNEET 341
Query: 498 VESMIIHARYKMGWIEKEK 516
+++I+ AR W ++K
Sbjct: 342 AKAVILTAREH--WFTEDK 358
>gi|154497680|ref|ZP_02036058.1| hypothetical protein BACCAP_01656 [Bacteroides capillosus ATCC
29799]
gi|150273178|gb|EDN00323.1| hypothetical protein BACCAP_01656 [Bacteroides capillosus ATCC
29799]
Length = 400
Score = 315 bits (808), Expect = 9e-84, Method: Composition-based stats.
Identities = 150/385 (38%), Positives = 222/385 (57%), Gaps = 7/385 (1%)
Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLF 63
+ E + EK I + +L + ++ A + + G +I VE + E G++ ++
Sbjct: 15 DGKEFFAAIGMIEQEKGIPKGYMLEKITQALISAYKRDHEGAGDNIMVEADEEKGEVRMY 74
Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+VVE V+N ++SL AR R P I +G VV + DFGR+A Q+A+QVIIQ +R
Sbjct: 75 VKKDVVETVDNPYTEVSLADARQRLPHIRLGDVVRVEVKTKDFGRIAAQTARQVIIQGMR 134
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLR 177
EAER Y EF K E+++G V R++ + L +D + E + E R
Sbjct: 135 EAERGMIYDEFSSKEHELLTGVVTRIDPRSGSASLRIGSGNEATDAFLAAGEQVRGETFR 194
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
GDR+K Y+ +VRR +GPQVL+SRTHP + +LF +EVPEI++G V+VK+++R+ GSR
Sbjct: 195 EGDRLKVYVVEVRRSTKGPQVLISRTHPGLVKRLFELEVPEIFDGTVEVKSIAREAGSRT 254
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
KLAV+S+D ++DP+GACVG RG RV +V EL+ EK+DI+ +S D A +V AL PA V
Sbjct: 255 KLAVWSADPNVDPIGACVGPRGQRVNNIVEELKGEKVDIIKYSEDPAEYVAAALSPADVI 314
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
V +D V+VP +QLSLAIG+ GQN RLA++LTG+ IDI + + +E
Sbjct: 315 SVTTLDDGKSCRVVVPDDQLSLAIGKEGQNARLAAKLTGFKIDIKPASNPGGDEADELDE 374
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFA 382
+ + A E
Sbjct: 375 VLVDDVADEADETADAAETADESLD 399
>gi|73748752|ref|YP_307991.1| transcription elongation factor NusA [Dehalococcoides sp. CBDB1]
gi|147669518|ref|YP_001214336.1| transcription elongation factor NusA [Dehalococcoides sp. BAV1]
gi|289432778|ref|YP_003462651.1| transcription termination factor NusA [Dehalococcoides sp. GT]
gi|73660468|emb|CAI83075.1| N utilization substance protein A [Dehalococcoides sp. CBDB1]
gi|146270466|gb|ABQ17458.1| NusA antitermination factor [Dehalococcoides sp. BAV1]
gi|288946498|gb|ADC74195.1| transcription termination factor NusA [Dehalococcoides sp. GT]
Length = 491
Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats.
Identities = 147/416 (35%), Positives = 243/416 (58%), Gaps = 4/416 (0%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL-YGTMSDIRVEINPETGDISLFR 64
+ + L ++ EK++ ++VVL+ + ++ A R + +I V+I+ TG + +
Sbjct: 2 KSDFLLAITQLSAEKNLPKEVVLATVESALVSAYRKESFAPNQNITVKIDQLTGKVKVMA 61
Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
+VVE+V + ++ L A+ IG ++ P D GR+A Q+AKQVI+Q++ E
Sbjct: 62 EKQVVEKVIDSRQEMRLLEAKRLKADAKIGDLMMVEDTPADAGRIAAQTAKQVILQRLHE 121
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AE + E+ K G+ + G V+R+E + VD+G + ++ +E E R G R+K
Sbjct: 122 AENTAIFDEYASKAGDTLVGVVQRIEPKQITVDIGRVEAIMPANEQAYGERYRAGQRIKV 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
Y+ DV + +GP V++SR+HP + +LF MEVPE++N +V++KAV+R+ GSR+K+AV +
Sbjct: 182 YVVDVAKTAKGPSVIVSRSHPGLVRRLFEMEVPEVFNQLVEIKAVAREAGSRSKVAVGAL 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
IDPVG CVG+RG R+Q +V+EL EKID+V WS + A+F+ N+L PA VTKV+L+E
Sbjct: 242 QPGIDPVGCCVGLRGIRIQNIVSELNGEKIDVVAWSSEIASFIANSLSPAQVTKVILNEA 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
V++P QLSL IG+ GQNVRLA +LTGW IDI + ++ + R + + + +
Sbjct: 302 ERSAIVVIPDRQLSLGIGKEGQNVRLAVKLTGWRIDIKSASDEDVERAEVAARQQEEISK 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
+ ++++ V A V + V + ++ + E A E +A E
Sbjct: 362 SKITEKVVEKQPV---IAAVSKTETVPVEKVLPADTIIEPVAKETPAKAESVPEEQ 414
>gi|291287256|ref|YP_003504072.1| NusA antitermination factor [Denitrovibrio acetiphilus DSM 12809]
gi|290884416|gb|ADD68116.1| NusA antitermination factor [Denitrovibrio acetiphilus DSM 12809]
Length = 460
Score = 315 bits (806), Expect = 1e-83, Method: Composition-based stats.
Identities = 158/422 (37%), Positives = 256/422 (60%), Gaps = 9/422 (2%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
EL ++ D + EK I R+++ + +SI A G + + V ++ + G I + E
Sbjct: 4 ELTKVVDEIGREKGIARELLQEALEESIFAAVARKIGKLLEPDVFVDIDKGTIEILLPKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
V E V++ +I + A + + +G V+ P + GR A AKQ + +K+R+AE+
Sbjct: 64 VCESVDDKWTEIHIDNADEFKENPQLGDVIMVPATLEELGRQAALVAKQKLFEKLRDAEK 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+F+D++GEI++G V + + N+I+++G ++ V+ + E I + GD V++ +
Sbjct: 124 QVVLDQFQDRIGEIVNGVVLKTDRDNLIINIGKTEAVLPKREMIGGDFFNRGDYVRALLL 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
D+R + PQ++LSRTHP+FM KLF E+PE++ GI+ VKAVSR+PG RAK+AV++++SS
Sbjct: 184 DIRIIKGWPQLILSRTHPEFMKKLFETEIPEVFEGIIDVKAVSREPGDRAKVAVYTTNSS 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
IDPVGAC+G++G R+ A+ ELR EKID++ WSPDS FV NA+ PA V + ED
Sbjct: 244 IDPVGACIGLKGVRINAISNELRGEKIDVIEWSPDSIKFVCNAISPAEVVLTNIFEDEET 303
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA-- 365
IE++VP +QLSLAIG++GQNVRLA++LT W +D++ E E + R++ ++ Q +
Sbjct: 304 IEIVVPDDQLSLAIGKKGQNVRLAAKLTEWRLDVLKESEYAEIRKERMQDQEQDLKEFYE 363
Query: 366 -------INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
+D H L+ G+ D+E+L+ E+A +EE AV + A +YL
Sbjct: 364 MYNLDNLEGLDADTMHSLIEAGYDDIEKLSNADFKEVAQELECEEEKAVSLINMALDYLA 423
Query: 419 GI 420
Sbjct: 424 NK 425
>gi|237734616|ref|ZP_04565097.1| transcription termination-antitermination factor [Mollicutes
bacterium D7]
gi|229382436|gb|EEO32527.1| transcription termination-antitermination factor [Coprobacillus sp.
D7]
Length = 443
Score = 315 bits (806), Expect = 1e-83, Method: Composition-based stats.
Identities = 146/334 (43%), Positives = 218/334 (65%), Gaps = 1/334 (0%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLLE 67
+ + + EK I++DV L ++ +SI KA + Y +++RVEIN +TG LF L
Sbjct: 6 FMDALNLLIEEKGIEKDVFLEMLKESIGKAYKKNYLNPDANVRVEINEKTGKFRLFELRT 65
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+++++ ++SL+ A+ +P+ IG VV GR+A KQ+ QK+RE E+
Sbjct: 66 VVDDLDDEDIELSLEEAQAINPNYQIGDVVETEADIEHIGRLAAIQTKQLFRQKIRETEK 125
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y EF DK +II+G V RVE IV++G + + ++ I E L G +K Y+
Sbjct: 126 ETLYNEFADKKDDIITGIVDRVEDKFAIVNIGKTGAFLASNQQIPGEKLNEGQHLKVYVS 185
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
DV R +G +++SRT P F+ +LF +EVPE+Y+G V++KAVSR+PG R+K+AV++S+ +
Sbjct: 186 DVDRGTKGTHIVVSRTEPSFVKRLFELEVPEVYDGTVEIKAVSREPGERSKVAVYTSNEN 245
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
IDP+G+CVG +GSRV+ VV EL E IDI++WS D F+ NAL P+ V V ++E+
Sbjct: 246 IDPIGSCVGPKGSRVKNVVDELNGEMIDIILWSSDPVVFISNALSPSDVKWVSINEENHS 305
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
V+VP +QLSLAIG+RGQN RLA +LTGW IDI
Sbjct: 306 ALVVVPDDQLSLAIGKRGQNARLAVRLTGWKIDI 339
>gi|167756908|ref|ZP_02429035.1| hypothetical protein CLORAM_02457 [Clostridium ramosum DSM 1402]
gi|167703083|gb|EDS17662.1| hypothetical protein CLORAM_02457 [Clostridium ramosum DSM 1402]
Length = 448
Score = 315 bits (806), Expect = 1e-83, Method: Composition-based stats.
Identities = 146/334 (43%), Positives = 218/334 (65%), Gaps = 1/334 (0%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLLE 67
+ + + EK I++DV L ++ +SI KA + Y +++RVEIN +TG LF L
Sbjct: 6 FMDALNLLIEEKGIEKDVFLEMLKESIGKAYKKNYLNPDANVRVEINEKTGKFRLFELRT 65
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+++++ ++SL+ A+ +P+ IG VV GR+A KQ+ QK+RE E+
Sbjct: 66 VVDDLDDEDIELSLEEAQAINPNYQIGDVVETEADIEHIGRLAAIQTKQLFRQKIRETEK 125
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y EF DK +II+G V RVE IV++G + + ++ I E L G +K Y+
Sbjct: 126 ETLYNEFADKKDDIITGIVDRVEDKFAIVNIGKTGAFLASNQQIPGEKLNEGQHLKVYVS 185
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
DV R +G +++SRT P F+ +LF +EVPE+Y+G V++KAVSR+PG R+K+AV++S+ +
Sbjct: 186 DVDRGTKGTHIVVSRTEPSFVKRLFELEVPEVYDGTVEIKAVSREPGERSKVAVYTSNEN 245
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
IDP+G+CVG +GSRV+ VV EL E IDI++WS D F+ NAL P+ V V ++E+
Sbjct: 246 IDPIGSCVGPKGSRVKNVVDELNGEMIDIILWSSDPVVFISNALSPSDVKWVSINEENHS 305
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
V+VP +QLSLAIG+RGQN RLA +LTGW IDI
Sbjct: 306 ALVVVPDDQLSLAIGKRGQNARLAVRLTGWKIDI 339
>gi|270308254|ref|YP_003330312.1| transcription elongation factor [Dehalococcoides sp. VS]
gi|270154146|gb|ACZ61984.1| transcription elongation factor [Dehalococcoides sp. VS]
Length = 487
Score = 315 bits (806), Expect = 2e-83, Method: Composition-based stats.
Identities = 140/368 (38%), Positives = 227/368 (61%), Gaps = 1/368 (0%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL-YGTMSDIRVEINPETGDISLFR 64
+ + L ++ EK++ ++VVL+ + ++ A R + +I V+I+P TG + +
Sbjct: 2 KSDFLLAITQLSAEKNLPKEVVLATVESALVSAYRKESFAPNQNITVKIDPLTGKVKVMA 61
Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
+VVE+V + ++ L A+ + IG ++ P D GR+A Q+AKQVI+Q++ E
Sbjct: 62 EKQVVEKVIDSRQEMRLLEAKRQKADAKIGDLMMVEDTPADAGRIAAQTAKQVILQRLHE 121
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AE + E+ K G+ + G V+R+E + VD+G + ++ E E R G R+K
Sbjct: 122 AENTAIFDEYASKAGDTLVGVVQRIEPKQITVDIGRVEAIMPASEQAYGERYRAGQRIKV 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
Y+ DV + +GP V++SR+HP + +LF MEVPE++N +V++KAV+R+ GSR+K+AV +
Sbjct: 182 YVVDVAKTAKGPAVIVSRSHPGLVRRLFEMEVPEVFNQLVEIKAVAREAGSRSKVAVGAL 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
IDPVG CVG+RG R+Q +V+EL EKID+V W + ATF+ N+L PA VTKV+L+E
Sbjct: 242 QPGIDPVGCCVGLRGIRIQNIVSELNGEKIDVVAWDNEIATFIANSLSPAQVTKVILNEA 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
V++P QLSL IG+ GQNVRLA +LTGW IDI + ++ + R ++ + ++
Sbjct: 302 EKSAIVVIPDRQLSLGIGKEGQNVRLAVKLTGWRIDIKSASDEEVERAEEVARKQAEHIK 361
Query: 365 AINVDEII 372
V++
Sbjct: 362 PEAVEKQP 369
>gi|295426316|ref|ZP_06818975.1| transcription termination factor NusA [Lactobacillus amylolyticus
DSM 11664]
gi|295063989|gb|EFG54938.1| transcription termination factor NusA [Lactobacillus amylolyticus
DSM 11664]
Length = 401
Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats.
Identities = 137/402 (34%), Positives = 224/402 (55%), Gaps = 8/402 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + +K I ++V++ + ++ A + Y ++ V+ + G+ + +
Sbjct: 4 EMLEAFATLEEKKGIKQEVIVDAIKAALVAAYKKNYNQAQNVEVDFDERKGNFKVMAVKT 63
Query: 68 VVEEVENYTC--QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV++ + ++SL A + + ++G + + P +FGR+A Q+AKQVI+Q++REA
Sbjct: 64 VVDDDQLQDDRLEVSLSDALAINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER+ E+ E+I+GTV+R + V V +GN + V+ R + + E P D+++
Sbjct: 124 ERNHIVDEYSQYEDELITGTVERRDNRFVYVKIGNVEAVMPRSDQMPNETYNPQDKIRVL 183
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ V + +G Q+++SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S D
Sbjct: 184 VTRVGSDSKGAQIVVSRTAPDLVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKIAVKSID 243
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DE 303
+IDPVG CVG RG+RVQ VV EL E IDIV + D + ++ NAL PA V V D+
Sbjct: 244 PNIDPVGTCVGQRGARVQNVVNELGGENIDIVRYEDDPSDYIANALSPAEVIAVQFGDDD 303
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
+ VIVP QLSLAIG++GQ+VRLA++LTG+ I+I E E +
Sbjct: 304 EEKSALVIVPDYQLSLAIGKKGQSVRLAARLTGYKINIRPESEVEFVDEDKDENSDTNDN 363
Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEET 405
N E +D E A SE A+ + +D +
Sbjct: 364 DNANNTAAKNE----EASSDSAEEAISDESEDAADDTYDTKE 401
>gi|322436508|ref|YP_004218720.1| NusA antitermination factor [Acidobacterium sp. MP5ACTX9]
gi|321164235|gb|ADW69940.1| NusA antitermination factor [Acidobacterium sp. MP5ACTX9]
Length = 534
Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats.
Identities = 170/425 (40%), Positives = 249/425 (58%), Gaps = 8/425 (1%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
L Q +A++ EK I+ VV+S + D+I A R Y T ++R E++ +TG+I + V
Sbjct: 5 LYQSIEALSREKGIEPAVVVSAIEDAIALATRKYYKTQENMRAEMDKDTGEIRAYVFKTV 64
Query: 69 VEEVE---NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VE E + Q++L+ AR P +++GG + GR+A Q AKQVI QKVREA
Sbjct: 65 VETPEEIVDEINQLALEPARALAPEVEVGGELRFYKDTTPLGRIAAQMAKQVIFQKVREA 124
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ERD + E+ + GE+++ TVKR+E +VI DLG ++ + + E E G+RV+
Sbjct: 125 ERDTVFNEYNHRAGEVLNATVKRLEPMDVIFDLGKAEARMPKREQSRLEQFAVGERVRVV 184
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ V R +GPQV++SR P + LF EVPEIY+G V ++A++R+ G R K+AV S D
Sbjct: 185 LLRVDRAAKGPQVIVSRAAPALVQNLFQSEVPEIYDGTVSIRAIAREAGERTKIAVMSRD 244
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304
+DPVGACVGM+G RVQ+++ ELR EKIDI+ +S + TF AL+PA V++V + D
Sbjct: 245 KDVDPVGACVGMKGMRVQSIIRELRGEKIDIIEYSEEITTFAEKALQPAKVSRVSITDLA 304
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+IEVIV QLSLAIG++GQNVRLA++L W IDI +EEE ++ +
Sbjct: 305 EKQIEVIVDDTQLSLAIGKKGQNVRLAAKLLQWKIDIKSEEEKRQEVEQQMQAMSGGPTT 364
Query: 365 AI----NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
I + E I L+A G VE +A + E+ I G E+T +I R Y
Sbjct: 365 PIEQVTELGEQILEKLIAAGITTVEAVADMTAEELEQIPGIGEKTIEKISVAVRHYFGQY 424
Query: 421 DITLQ 425
+ +
Sbjct: 425 EEGEE 429
>gi|297565903|ref|YP_003684875.1| transcription termination factor NusA [Meiothermus silvanus DSM
9946]
gi|296850352|gb|ADH63367.1| transcription termination factor NusA [Meiothermus silvanus DSM
9946]
Length = 393
Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats.
Identities = 142/345 (41%), Positives = 215/345 (62%), Gaps = 10/345 (2%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD---------IRVEINPE 56
+ ++ VA E+ + D +++ +S++ A G + V ++P
Sbjct: 2 NKDFVEALQQVALERGVTADELITAFEESLRLAYLRQKGYKPKDVEEGLGPVVEVHLDPA 61
Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116
G + + + VVE+VE+ +ISL A DP + +G + P+ P +F R+AVQ AKQ
Sbjct: 62 GGGLEVLEIKTVVEKVEDPDKEISLADALAYDPDVQLGEEMEFPVDPEEFSRIAVQIAKQ 121
Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISREN 175
V+ Q+++EAER+R + E+KDK GE+I+G V RV+ GNV VDLG + ++ E I E
Sbjct: 122 VLTQRLKEAERNRVHTEYKDKEGEVITGQVTRVDNRGNVYVDLGRGEALMPPKEQIPSER 181
Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235
PG RVK Y+ V+R +GP +++SR + + L EVPEI GIV++KAV+R+PGS
Sbjct: 182 YHPGQRVKVYLKQVQRSAKGPSLIVSRASEELLKYLLRQEVPEINEGIVEIKAVAREPGS 241
Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295
R+K+AV S + ++DP+GAC+G +G R+QAV EL E++DI+ WS + F+ NAL PA
Sbjct: 242 RSKVAVTSHNPNVDPIGACIGHKGQRIQAVSAELGRERVDIIQWSANPREFIRNALSPAQ 301
Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340
V + D + R +V+V K+Q SLAIG+ GQNVRLAS+LTG+ ID
Sbjct: 302 VGNIETDNETKRAKVVVSKDQHSLAIGKAGQNVRLASKLTGYEID 346
>gi|298242762|ref|ZP_06966569.1| transcription termination factor NusA [Ktedonobacter racemifer DSM
44963]
gi|297555816|gb|EFH89680.1| transcription termination factor NusA [Ktedonobacter racemifer DSM
44963]
Length = 374
Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats.
Identities = 143/344 (41%), Positives = 217/344 (63%), Gaps = 8/344 (2%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
R E + EK + R+VV+ +A+++ A R +G ++R+E++ + G++ ++
Sbjct: 2 RSEFQAAIAQLIAEKGLPREVVMETVANALLAAYRKSFGGGENVRIEVD-KNGEVHVWAS 60
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV +V + +ISL A+ P+ +G ++ F R+ Q+AKQVI+Q++REA
Sbjct: 61 KRVVAQVNDSNEEISLAEAQRLVPNAALGQLLDVD-SSFIFSRIPTQTAKQVILQRIREA 119
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVD-----LGNSDGVIRRDETISRENLRPGD 180
E + Y + K VGEI GT+ R E +VD + +G++ ETI E+ R
Sbjct: 120 EHEHLYEQVKGWVGEIRLGTLIREEQRGWVVDFDLDKVDKVEGLMPISETIPGEHYRMKQ 179
Query: 181 RVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
R++ YIYDVRR + R Q+L+SRTH + +LF EVPEIY+G V++KA++R+PGSRAK+
Sbjct: 180 RLRLYIYDVRRIQGRMLQILVSRTHRDLVRRLFENEVPEIYDGSVEIKAITREPGSRAKV 239
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV++ +DP+G+CVG+RG R+ +V EL DEKIDI+ WSPD+A+FV NAL P KV
Sbjct: 240 AVYARQEGLDPIGSCVGVRGQRISNIVRELNDEKIDIIQWSPDTASFVANALSPVKPLKV 299
Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343
L + V VP+ QLSLAIG+ GQN RLA++LTGW +D++
Sbjct: 300 ELRDSDHTAIVTVPERQLSLAIGKDGQNARLAAKLTGWRVDVVK 343
>gi|168180700|ref|ZP_02615364.1| N utilization substance protein A [Clostridium botulinum NCTC 2916]
gi|182668525|gb|EDT80504.1| N utilization substance protein A [Clostridium botulinum NCTC 2916]
Length = 457
Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats.
Identities = 158/449 (35%), Positives = 270/449 (60%), Gaps = 6/449 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDIS 61
E ++ + EK I D++ + + D++ A + Y G+ ++++V +N E G+I
Sbjct: 2 NQEFVEALREIVKEKGISADLLFTTIEDALVTAYKKNYAKQGGSTNNVKVIMNRENGEIK 61
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
++ +VV+ VE +ISL+ A++ DP+ ++ +++ + P FGR+A Q+AKQV+IQ+
Sbjct: 62 VYAQKKVVDFVEEEVEEISLEDAKEIDPNYELEDIINIEVTPKKFGRIAAQAAKQVVIQR 121
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
++E ER Y E+ +K +I++GTV R + GN+++++G S+ V+ +E I E R ++
Sbjct: 122 IKEEERRIVYNEYIEKEEDILTGTVLRKDKGNILINVGKSEAVLGPNEQIPGEQFRFNEK 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K Y+ +V+ +GPQVL+SRTHP + +LF +EVPEIYNGIV++K+++R+ GSR K+AV
Sbjct: 182 IKLYVVEVKNTTKGPQVLISRTHPGLVKRLFELEVPEIYNGIVEIKSIAREAGSRTKIAV 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
+S+D S+DP+GACVG +G RVQ +V EL++EKIDI+ WS + NAL PA V V +
Sbjct: 242 YSNDESVDPMGACVGPKGVRVQNIVNELKNEKIDIIKWSKFPDELICNALSPAKVIDVTI 301
Query: 302 -DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
DE+ +V QLSLAIG+ GQNVRLA++LTGW IDI ++ + + +E
Sbjct: 302 VDEENKAARAVVDDSQLSLAIGKEGQNVRLAAKLTGWKIDIKSKSQAEKEATLNLSEAKD 361
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
+ ++ + + + E I E S+ ++E E+ +A E +
Sbjct: 362 EKILENKKEDKEDKIDLHAEMDSIVEDTKENIKEEISVSHDNQEVDSEL-EKAMEEVFNT 420
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKV 449
+ K +++ + E+ P ID++ +
Sbjct: 421 EDKENKLEKDMNLFEDDNEKPSIDTEKAI 449
>gi|148380376|ref|YP_001254917.1| N utilization substance protein A [Clostridium botulinum A str.
ATCC 3502]
gi|153933708|ref|YP_001384596.1| transcription elongation factor NusA [Clostridium botulinum A str.
ATCC 19397]
gi|153936194|ref|YP_001388112.1| transcription elongation factor NusA [Clostridium botulinum A str.
Hall]
gi|170761276|ref|YP_001787732.1| transcription elongation factor NusA [Clostridium botulinum A3 str.
Loch Maree]
gi|226949774|ref|YP_002804865.1| N utilization substance protein A [Clostridium botulinum A2 str.
Kyoto]
gi|148289860|emb|CAL83968.1| putative transcription elongation protein NusA [Clostridium
botulinum A str. ATCC 3502]
gi|152929752|gb|ABS35252.1| transcription termination factor NusA [Clostridium botulinum A str.
ATCC 19397]
gi|152932108|gb|ABS37607.1| N utilization substance protein A [Clostridium botulinum A str.
Hall]
gi|169408265|gb|ACA56676.1| N utilization substance protein A [Clostridium botulinum A3 str.
Loch Maree]
gi|226843922|gb|ACO86588.1| N utilization substance protein A [Clostridium botulinum A2 str.
Kyoto]
gi|322806687|emb|CBZ04256.1| transcription termination protein NusA [Clostridium botulinum
H04402 065]
Length = 457
Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats.
Identities = 159/449 (35%), Positives = 271/449 (60%), Gaps = 6/449 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDIS 61
E ++ + EK I D++ + + D++ A + Y G+ ++++V +N E G+I
Sbjct: 2 NQEFVEALREIVKEKGISADLLFTTIEDALVTAYKKNYAKQGGSTNNVKVIMNRENGEIK 61
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
++ +VV+ VE +ISL+ A++ DP+ ++ +++ + P FGR+A Q+AKQV+IQ+
Sbjct: 62 VYAQKKVVDFVEEEVEEISLEDAKEIDPNYELEDIINIEVTPKKFGRIAAQAAKQVVIQR 121
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
++E ER Y E+ +K +I++GTV R + GN+++++G S+ V+ +E I E R ++
Sbjct: 122 IKEEERRIVYNEYIEKEEDILTGTVLRKDKGNILINVGKSEAVLGPNEQIPGEQFRFNEK 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K Y+ +V+ +GPQVL+SRTHP + +LF +EVPEIYNGIV++K+++R+ GSR K+AV
Sbjct: 182 IKLYVVEVKNTTKGPQVLISRTHPGLVKRLFELEVPEIYNGIVEIKSIAREAGSRTKIAV 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
+S+D S+DP+GACVG +G RVQ +V EL++EKIDI+ WS + NAL PA V V +
Sbjct: 242 YSNDESVDPMGACVGPKGVRVQNIVNELKNEKIDIIKWSKFPDELICNALSPAKVIDVTI 301
Query: 302 -DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
DE+ +V QLSLAIG+ GQNVRLA++LTGW IDI ++ + + +E
Sbjct: 302 VDEENKAARAVVDDSQLSLAIGKEGQNVRLAAKLTGWKIDIKSKSQAEKEATLNLSEAKD 361
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
+ ++ + + E + E I E S+ ++E E+ +A E +
Sbjct: 362 EKILENKKEDKEDKIDLHEEMDSIVEDTKENIKEEISVSHDNQEVDSEL-EKAMEEVFNT 420
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKV 449
+ K +++ + E+ P ID++ +
Sbjct: 421 EDKENKLEKDMNLFEDDNEKPSIDTEKAI 449
>gi|282889767|ref|ZP_06298306.1| hypothetical protein pah_c004o139 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281500341|gb|EFB42621.1| hypothetical protein pah_c004o139 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 424
Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats.
Identities = 151/420 (35%), Positives = 244/420 (58%), Gaps = 10/420 (2%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+L+ I + + EK I R++V++ + +S++ AA+ S++ V INP++G+I ++
Sbjct: 2 NKDLIAIFEYLEREKGIKRNIVVAAIEESLRAAAKKSISGASNVTVTINPKSGNIDVYCE 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
E+VEEVE +ISL+ AR+ DP +IG + P DFGR+A Q A+Q+I QK+R A
Sbjct: 62 KEIVEEVEVEAQEISLQDAREIDPDCEIGQFIDVVATPKDFGRIAAQKARQIITQKLRNA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
ERD Y E++ + E+ISGT+KR NV++DLG + ++ E G++V +
Sbjct: 122 ERDVIYEEYRHRTNELISGTIKRFVRGSNVVIDLGKVEAIMPTKHYPKTEKYHVGEKVLA 181
Query: 185 YIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+Y+V E G +V+LSR+HP+F+ +L EVPE+ +GIV + + R+ G R K+ V S
Sbjct: 182 LLYEVNETENGGAEVVLSRSHPEFVKQLMMQEVPELNDGIVVIDRIVREAGYRTKMTVRS 241
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
+DS IDPVG+CVGMRG RV+ VV EL +EKIDI+ +S D + NAL P + KV ++E
Sbjct: 242 TDSKIDPVGSCVGMRGIRVKNVVRELNNEKIDIIPYSQDPVELLQNALDPIEIRKVSVNE 301
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
D I ++V + IG++G N RL SQL G+ +++ E + + +E
Sbjct: 302 DDKTISIVVDDADFAAVIGKKGMNARLNSQLIGYELEVQRMAEYNHAMAVERSELATSQE 361
Query: 364 QAI--------NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415
+ V+ +I L+AEG++ + ++A++ G E A +I + R+
Sbjct: 362 PWLDKPLKNIEGVNTLIFEHLIAEGYSTPRAILTAAPEKLATVPGISIELADKILEQIRK 421
>gi|291166364|gb|EFE28410.1| transcription termination factor NusA [Filifactor alocis ATCC
35896]
Length = 412
Score = 313 bits (803), Expect = 3e-83, Method: Composition-based stats.
Identities = 139/380 (36%), Positives = 218/380 (57%), Gaps = 31/380 (8%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD----------------- 48
E + + EK I +D+++ + ++ KA + + ++
Sbjct: 2 NAEFISAIQQLEDEKGISKDILIEAVEMALVKAYKKNFVEKNNYNDTLVEKDPKKLSLEK 61
Query: 49 --IRVEINPETGDISLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM 104
++V I+ ETGDI +F EVV E++ +ISL+ A++ D + +G +V + + P
Sbjct: 62 NNVQVSIDRETGDIKVFSKKEVVNKREIDLLEGEISLEGAQEIDINYKVGDIVQEEITPR 121
Query: 105 DFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN-------VIVD 157
+FGR+A Q+A+QV+IQK+ EA RD Y EF ++ EI+ G V R+ N ++ +
Sbjct: 122 NFGRIATQTARQVVIQKITEAGRDIIYNEFSNRESEIMIGEVVRIGKHNTCHLNLSLVSE 181
Query: 158 LGNS---DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHM 214
G++ + + E I E G R+ YI +V++ PQ+L+SR+ P + +LF
Sbjct: 182 KGHTIYGEATMISQEQIPYEEYSVGQRIIVYILEVKKHNNVPQILVSRSRPGLVKRLFER 241
Query: 215 EVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKI 274
EVPEI +GIVQ+K+++R+ GSR KL+V S D S+D +GACVG +G RV +V EL EKI
Sbjct: 242 EVPEISDGIVQIKSIAREAGSRTKLSVCSVDPSVDAIGACVGGKGIRVANIVEELHGEKI 301
Query: 275 DIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQL 334
DIV + + ++ NAL P+ V V ++E+ +VIVP QLSLAIG+ GQN RLA++L
Sbjct: 302 DIVNYDENPIEYISNALSPSKVVDVSVNEEEKTAKVIVPDYQLSLAIGKEGQNARLAAKL 361
Query: 335 TGWTIDIITEEEDSINRQKD 354
TGW IDI +E + D
Sbjct: 362 TGWKIDIKSESQALQETMDD 381
>gi|241895994|ref|ZP_04783290.1| transcription elongation factor [Weissella paramesenteroides ATCC
33313]
gi|241870725|gb|EER74476.1| transcription elongation factor [Weissella paramesenteroides ATCC
33313]
Length = 386
Score = 313 bits (803), Expect = 3e-83, Method: Composition-based stats.
Identities = 143/370 (38%), Positives = 229/370 (61%), Gaps = 2/370 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
EL+ DA+ EK I +V+++ + ++++KA Y ++ V+ + + G I ++ +
Sbjct: 14 ELVSALDALEEEKGIKAEVLIAALEEALKKAYEKNYDESENVEVQFDKKKGSIKVYAVKT 73
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+E+E QISL+ A + + + ++G + + P DFGR+A Q+AKQ+I+QKVREAER
Sbjct: 74 VVDEIEEPYEQISLEEALELNKAYEVGDEIRFEVTPKDFGRLAAQTAKQIIMQKVREAER 133
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVKSYI 186
Y F EII+G V+R + + + L GN ++ ++ + EN + GD++K +
Sbjct: 134 GVVYDNFVGYEDEIITGEVEREDSRYLYIILPGNQMAAMKPNDQMPSENYQMGDKIKVLV 193
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
V+ EQ+GPQV +SRTHP + +LF EVPE+++G V++K+++R+ G R+K+AV+S +
Sbjct: 194 SQVQNEQKGPQVFVSRTHPDLVKRLFEAEVPEVFDGTVEIKSIAREAGDRSKIAVYSHNE 253
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE-DV 305
++D VG VG RG+RVQ+VVTEL E +DIV W+ D A F+ N+L PA V +V+ D +
Sbjct: 254 NLDAVGTMVGQRGARVQSVVTELSGENMDIVEWTEDPAEFIKNSLNPAEVVEVIFDPTND 313
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
V+VP QLSLAIG+RGQN RLA++LTG+ IDI E + N+ T +
Sbjct: 314 RAATVLVPDYQLSLAIGKRGQNARLAARLTGFKIDIKPESAREEVIAELENQSTDNSVAE 373
Query: 366 INVDEIIAHL 375
+ +
Sbjct: 374 NIEEVELDDN 383
>gi|89898348|ref|YP_515458.1| transcription elongation factor NusA [Chlamydophila felis Fe/C-56]
gi|89331720|dbj|BAE81313.1| N utilization protein A [Chlamydophila felis Fe/C-56]
Length = 434
Score = 313 bits (802), Expect = 4e-83, Method: Composition-based stats.
Identities = 148/430 (34%), Positives = 239/430 (55%), Gaps = 9/430 (2%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+L+ I D + EK I R V++ + +++ AA+ +++ V INP TGDI +F
Sbjct: 2 NKDLVAIFDYMEKEKGIQRPVIIGAIESALKIAAKKTLRDDANVSVNINPRTGDIEVFCE 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
E+VE EN + +I L AR+ DP IG + P FGR+A +A+Q+I QK+R A
Sbjct: 62 KEIVEVCENPSKEIPLDKAREYDPECQIGQYMDVPFVSEHFGRIAAHAARQIIGQKLRHA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
ERD Y E++ +V EI+SG VKR + N+++DLG +G++ E + GD++ +
Sbjct: 122 ERDVIYEEYRHRVNEILSGVVKRFAKGSNLVIDLGKVEGLLPARYYPKTEKHKVGDKIYA 181
Query: 185 YIYD-VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+Y+ E G +V+LSR+HP+F+ +LF EVPE+ +G V++ ++R+ G R KLAV S
Sbjct: 182 LLYEVQESENGGAEVILSRSHPEFVKQLFLQEVPELEDGSVEIIKIAREAGYRTKLAVSS 241
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
+D DPVGA VGMRGSRV+ ++ EL DEKIDIV +SP + + N L P + K+ + E
Sbjct: 242 TDPKTDPVGAFVGMRGSRVKNIIRELNDEKIDIVNYSPVTTELLQNLLCPIEIQKIAILE 301
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
D I ++V + IG+RG N RL SQ+ + +++ E + + + +F
Sbjct: 302 DDKVIAIVVHDADYATVIGKRGINARLISQILDYELEVQRMSEYNKLLEIQRLQLAEFDN 361
Query: 364 QAINVDEIIA-------HLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416
++ + LV G+ + ++ +++AS+ G E A +I + +Y
Sbjct: 362 PQLDEPLDMEGISKLVVQNLVHAGYDTIRKVLLASANDLASVPGISLELAYKILEQVSKY 421
Query: 417 LEGIDITLQK 426
EG K
Sbjct: 422 GEGKVDEKPK 431
>gi|269792606|ref|YP_003317510.1| NusA antitermination factor [Thermanaerovibrio acidaminovorans DSM
6589]
gi|269100241|gb|ACZ19228.1| NusA antitermination factor [Thermanaerovibrio acidaminovorans DSM
6589]
Length = 369
Score = 313 bits (802), Expect = 5e-83, Method: Composition-based stats.
Identities = 140/337 (41%), Positives = 219/337 (64%), Gaps = 3/337 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E + + EK + DV+ S + ++ A R G ++ V I+ E G+I L + +
Sbjct: 6 EFGKALKQLEAEKGLSLDVISSSLEAALVSAYRKFKGGNQNVEVFIDFENGEIFLSEVKQ 65
Query: 68 VVEEVENYTCQISLKVARDRD-PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
VV EV +IS++ A ++ G V+ + P +FGR+A Q+A+QVIIQ++++AE
Sbjct: 66 VVREVTCPDTEISVEEAHRMGFGDVEEGDVIRIEVFPENFGRIAAQTARQVIIQRLKDAE 125
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSY 185
R + EF D+ G+++ GT+ +VE ++V L ++ ++ R+E + E R GDR K +
Sbjct: 126 RQIIFEEFADRTGDLVQGTIFKVEGDQILVRLNDRTEAILPREERVLGEAYRVGDRYKFF 185
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ DVR+ +GP++++SRTHP + KLF +EVPEI +GI+++K V R+ G R+K+AV S D
Sbjct: 186 LLDVRQTTKGPRIVVSRTHPGLLRKLFELEVPEIRDGIIEIKNVVREAGGRSKVAVQSLD 245
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDED 304
S++DPVGACVG +G+R+++V+ EL E++D++VWS D +V NAL PA V KV L +
Sbjct: 246 SNVDPVGACVGPKGTRIKSVMDELGGERVDVIVWSSDPIAYVKNALSPAKVVKVEPLLDQ 305
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
+ V V +QLSLAIG+ GQNVRLA++LTGW IDI
Sbjct: 306 ERALRVFVRPDQLSLAIGKAGQNVRLAARLTGWKIDI 342
>gi|170754323|ref|YP_001781964.1| transcription elongation factor NusA [Clostridium botulinum B1 str.
Okra]
gi|169119535|gb|ACA43371.1| N utilization substance protein A [Clostridium botulinum B1 str.
Okra]
Length = 457
Score = 313 bits (802), Expect = 5e-83, Method: Composition-based stats.
Identities = 154/436 (35%), Positives = 260/436 (59%), Gaps = 5/436 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDIS 61
E ++ + EK I D++ + + D++ A + Y G+ ++++V +N E G+I
Sbjct: 2 NQEFVEALREIVKEKGISADLLFTTIEDALVTAYKKNYAKQGGSTNNVKVIMNRENGEIK 61
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
++ +VV+ VE +ISL+ A++ DP+ ++ +++ + P FGR+A Q+AKQV+IQ+
Sbjct: 62 VYAQKKVVDFVEEEVEEISLEDAKEIDPNYELEDIINIEVTPKKFGRIAAQAAKQVVIQR 121
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
++E ER Y E+ +K +I++GTV R + GN+++++G S+ V+ +E I E R ++
Sbjct: 122 IKEEERRIVYNEYIEKEEDILTGTVLRKDKGNILINVGKSEAVLGPNEQIPGEQFRFNEK 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K Y+ +V+ +GPQVL+SRTHP + +LF +EVPEIYNGIV++K+++R+ GSR K+AV
Sbjct: 182 IKLYVVEVKNTTKGPQVLISRTHPGLVKRLFELEVPEIYNGIVEIKSIAREAGSRTKIAV 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
+S+D ++DP+GACVG +G RVQ +V EL++EKIDI+ WS + NAL PA V V +
Sbjct: 242 YSNDEAVDPMGACVGPKGVRVQNIVNELKNEKIDIIKWSKFPDELICNALSPAKVIDVTI 301
Query: 302 -DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
DE+ V+V QLSLAIG+ GQNVRLA++LTGW IDI ++ + + + +E
Sbjct: 302 VDEENKAARVVVDDSQLSLAIGKEGQNVRLAAKLTGWKIDIKSKSQAEKEGRLNLSEAKD 361
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
+ ++ + E + E I E S+ +EE ++ E
Sbjct: 362 EKILENKKEDKEDKIDSHEEMDSIVEDTKENIKEEISVSESNEEVDSGLEKTMEEAFNTE 421
Query: 421 DITLQKKIRELGVSEE 436
D + + ++
Sbjct: 422 DKENKLEKDINLFEDD 437
>gi|312869034|ref|ZP_07729211.1| transcription termination factor NusA [Lactobacillus oris
PB013-T2-3]
gi|311095460|gb|EFQ53727.1| transcription termination factor NusA [Lactobacillus oris
PB013-T2-3]
Length = 398
Score = 313 bits (801), Expect = 5e-83, Method: Composition-based stats.
Identities = 139/391 (35%), Positives = 219/391 (56%), Gaps = 20/391 (5%)
Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62
S E++ D + EK I ++VV+ + +++ A + YG ++ VE N TG+I +
Sbjct: 4 SKVNSEMIGALDYLEKEKGIKKEVVIEALEQALESAYKQNYG-DKNVEVEFNATTGNIKV 62
Query: 63 FRLLEVVEEVE----NYTCQISLKVARDR--DPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116
+ + + ++ E + +SL AR D+ + + + P +FGR+A Q+AKQ
Sbjct: 63 YAVKTITDDEEKVAADSNQYMSLAEARKLPHGQGYDVDDQIREEVTPRNFGRIAAQTAKQ 122
Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISREN 175
V++Q++RE ER Y ++K EII+G V R + VDLG +G + + + E+
Sbjct: 123 VVMQRLREEERRIVYDKYKTYENEIITGEVSREDKRFTYVDLGDGVEGAMGFRDKMPNEH 182
Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235
R DR++ Y+ V ++RGPQ+ +SRT P+ + +LF EVPEI +G V ++ ++R+ G
Sbjct: 183 YRVHDRIQVYVSKVNDDRRGPQIYVSRTAPELLKRLFEREVPEIKDGTVLIENIAREAGD 242
Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295
RAK+AV+S+D +IDPVG CVG RGSRVQA+V EL E +DIV + D A F+ NAL PA
Sbjct: 243 RAKVAVYSNDDNIDPVGTCVGPRGSRVQAIVNELDGENMDIVEYVKDPAKFIANALNPAE 302
Query: 296 VTKVVLDE------------DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343
V V+ ++ V+VP +QLSLAIG+RGQN RLA++LT + IDI +
Sbjct: 303 VLDVIFNDPVTIEREDGEEEQERSCTVVVPDDQLSLAIGKRGQNARLAARLTKYKIDIKS 362
Query: 344 EEEDSINRQKDFNERTQFFMQAINVDEIIAH 374
E + + Q + +
Sbjct: 363 ASEMEELQAQAETAEDQPATDDQPLVDENDQ 393
>gi|325282976|ref|YP_004255517.1| NusA antitermination factor [Deinococcus proteolyticus MRP]
gi|324314785|gb|ADY25900.1| NusA antitermination factor [Deinococcus proteolyticus MRP]
Length = 405
Score = 313 bits (801), Expect = 6e-83, Method: Composition-based stats.
Identities = 138/369 (37%), Positives = 218/369 (59%), Gaps = 1/369 (0%)
Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70
VA +++I+ ++ +S+ A + + V ++P++G++ + + EVVE
Sbjct: 9 DALREVAQQRNINELQLIEAFEESLALAYKRNIDAEKRVEVHLDPQSGELEVLIIKEVVE 68
Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130
+VE+ QISL A + DP +++G + P+ F R+A+Q+AKQ + QK+RE ER+
Sbjct: 69 KVEDENMQISLAEALELDPGVEVGMEMEFPVEREQFSRIALQAAKQTLTQKMRETERNVV 128
Query: 131 YLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDV 189
Y E+KD+ G++++ V R + N V+LG + ++ E I E L PG+RVK Y+ +V
Sbjct: 129 YNEYKDREGQVLTAQVVRSDNKGNWFVELGAGEAIMPPREQIPGEKLTPGNRVKIYLKEV 188
Query: 190 RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSID 249
R+ +GP +L SR + + L E+PE+ NG+V++KAVSR+ G R+K+AVFS++S++D
Sbjct: 189 RKTPKGPTILASRADERLLDYLLRQEIPEVQNGVVEIKAVSREAGQRSKVAVFSNNSNVD 248
Query: 250 PVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIE 309
P+GAC+G RG R+QAV EL E++D+++W D F+ NAL PA V + LDE+ G
Sbjct: 249 PIGACIGHRGGRIQAVTGELGRERVDVILWDEDQREFIRNALSPAKVGPIDLDEETGTAT 308
Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVD 369
V V +QLSLAIG+ GQNVRLA++LTG ID+ S + D
Sbjct: 309 VTVTPDQLSLAIGKGGQNVRLAAKLTGQKIDLRETAAISDLDEAMKQAVEAEGEGKSGRD 368
Query: 370 EIIAHLLVA 378
L A
Sbjct: 369 TSAFDALFA 377
>gi|297748226|gb|ADI50772.1| N utilization substance protein A [Chlamydia trachomatis D-EC]
gi|297749106|gb|ADI51784.1| N utilization substance protein A [Chlamydia trachomatis D-LC]
Length = 465
Score = 312 bits (800), Expect = 8e-83, Method: Composition-based stats.
Identities = 146/428 (34%), Positives = 235/428 (54%), Gaps = 9/428 (2%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+L+ I D + EK I R ++ + +++ AA+ +++ V INP TGDI +F
Sbjct: 33 NKDLVAIFDYMEREKGIQRSTIVGAIESALKIAAKKTLRDDANVSVSINPRTGDIEVFCE 92
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
++VE+ +N + +I L AR+ DP IG + P FGR+A +A+Q+I QK+R A
Sbjct: 93 KQIVEKCQNPSKEIPLDKAREYDPDCQIGQYMDVPFISDQFGRIAAHAARQIIGQKLRHA 152
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
ERD Y E++ + EIISG VK G N++VDLG +G++ E + GD++ +
Sbjct: 153 ERDVIYEEYRHRKNEIISGVVKSFARGANLVVDLGKVEGLLPARFYPKTEKHKVGDKIYA 212
Query: 185 YIYD-VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+Y+ E G +V+LSR HP+F+ +LF EVPE+ G V++ ++R+ G R K+AV S
Sbjct: 213 LLYEVQESENGGAEVILSRNHPEFVKQLFVQEVPELEEGSVEIVKIAREAGYRTKMAVRS 272
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
S+ D VGA VGMRGSR++ ++ EL DEKID+V +SP S + N L P + K+ + E
Sbjct: 273 SNPQTDAVGAFVGMRGSRIKNIIRELNDEKIDVVNYSPVSTELLQNLLYPVEIQKIAILE 332
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
D I +IV + IG+RG N RL SQ+ G+ +++ E + + + +F
Sbjct: 333 DDKVIAIIVQDSDYATVIGKRGINARLISQILGYELEVQRVSEYNKLLEIQRLQLAEFED 392
Query: 364 QAI-------NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416
+ ++ +I L G+ + ++ SE+AS+ G E A +I + +Y
Sbjct: 393 PRLDQPLEVEGINTLIVQNLEHAGYDTIRKILLASASELASVPGISLELAYKILEQVSKY 452
Query: 417 LEGIDITL 424
EG
Sbjct: 453 GEGKVDEK 460
>gi|283782403|ref|YP_003373158.1| NusA antitermination factor [Pirellula staleyi DSM 6068]
gi|283440856|gb|ADB19298.1| NusA antitermination factor [Pirellula staleyi DSM 6068]
Length = 404
Score = 311 bits (798), Expect = 1e-82, Method: Composition-based stats.
Identities = 153/422 (36%), Positives = 242/422 (57%), Gaps = 35/422 (8%)
Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
N ++L+I D++ EK+ID+DVV + ++ AA+ YG +DI + I+ TG +S
Sbjct: 1 MNPADMLRIVDSLHREKNIDKDVVFQAIEAALVSAAKKHYGDAADITINIDRNTGALS-- 58
Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+ + DP GR+ Q+AKQVIIQK+R
Sbjct: 59 ----------------GIADGQALDPE-------------EISGRIGAQTAKQVIIQKIR 89
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183
EAERD E+ D++G++I+G V R E IV LG + ++ R E I E P +RV+
Sbjct: 90 EAERDSLLGEYGDQIGQLINGVVTRSEGAATIVSLGTIEAILPRSEQIPGETHHPNERVR 149
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+ +++V+ + +V+LSRT PQF+ +LF E+PEI +G++ V A++R+P R+K+AV S
Sbjct: 150 AIVFEVKPQGSRVKVVLSRTRPQFVQRLFEQEIPEIADGVISVNAIAREPAHRSKVAVSS 209
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
+D +D VGACVG+RG+R++ +V EL E+IDIV WS D+ T + +L+PA V +V+L +
Sbjct: 210 TDQRVDCVGACVGVRGNRIKNIVDELSGERIDIVRWSDDAETLIRASLQPAEVDQVLLCD 269
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
+GR V+V ++QLSLAIGR+GQNVRLAS+L GW I+I+T +E + ++
Sbjct: 270 MIGRAIVLVREDQLSLAIGRKGQNVRLASKLCGWDIEIMTNDELEQQIDRAVGGFSKIE- 328
Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423
V E +A LV +G+ ++L+ ++ + + G EE EI +A +
Sbjct: 329 ---GVTEELAQRLVEQGYLSYDDLSVIEPDALMEMGGLTEEQVEEIVNQAETLATDAERA 385
Query: 424 LQ 425
Sbjct: 386 AD 387
>gi|297520389|ref|ZP_06938775.1| transcription elongation factor NusA [Escherichia coli OP50]
Length = 323
Score = 311 bits (798), Expect = 1e-82, Method: Composition-based stats.
Identities = 138/340 (40%), Positives = 209/340 (61%), Gaps = 18/340 (5%)
Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235
RPGDRV+ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGS
Sbjct: 1 FRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGS 60
Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295
RAK+AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA
Sbjct: 61 RAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPAD 120
Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355
V +V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q +
Sbjct: 121 VASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEA 180
Query: 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415
+ F + +++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+
Sbjct: 181 HAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKN 240
Query: 416 YLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSE 475
L I ++ + + +++L ++ G+D + L G+ T+EDLA +DDL
Sbjct: 241 ALATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIE- 299
Query: 476 NKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ ++I+ AR + W E
Sbjct: 300 ----------------GLTDEKAGALIMAAR-NICWFGDE 322
>gi|150021290|ref|YP_001306644.1| transcription elongation factor NusA [Thermosipho melanesiensis
BI429]
gi|149793811|gb|ABR31259.1| NusA antitermination factor [Thermosipho melanesiensis BI429]
Length = 344
Score = 311 bits (798), Expect = 1e-82, Method: Composition-based stats.
Identities = 127/339 (37%), Positives = 214/339 (63%), Gaps = 1/339 (0%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
L+ LQ + + EK I D ++ ++ ++ A + +G ++ + IN +TG+I L++L
Sbjct: 2 NLDFLQALEQLEEEKGIKVDEIIPIIEKALVSAYKKDFGGEKNVEITINRQTGEIELYQL 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
LEVV++VE T QISL+ A + IG + + FGR+A Q+AKQV+IQ++RE
Sbjct: 62 LEVVDKVEKETTQISLEDALKISSNAKIGDTIRKRINVKKFGRIAAQTAKQVLIQRIREI 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
E+++Q+ ++ + G+I + V R+ + +G + + + E I E + P +K Y
Sbjct: 122 EKEKQFEKYSELAGKITTAEVIRITKEWADIRIGKLETRLPKKEWIPGETIEPASLIKVY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ DV+++++GP++L++R + +F+ L +EVPEI + +V++ + R+PG R K+AV S++
Sbjct: 182 VKDVKKDKKGPKILVTRINEEFIKGLLELEVPEIESKVVEIVKIVREPGIRTKVAVKSNN 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304
+DPVGAC+G G R+ A++ EL+ EK+DI+ WS D + +AL+PA V +V + D +
Sbjct: 242 PKVDPVGACIGEEGVRIAAILRELKGEKLDIIKWSDDPKELIASALQPANVVEVEILDPE 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343
+IVP QLSLAIG+ GQN RLA++LTGW IDI
Sbjct: 302 NKASRIIVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340
>gi|62185081|ref|YP_219866.1| transcription elongation factor NusA [Chlamydophila abortus S26/3]
gi|62148148|emb|CAH63905.1| N utilization substance protein A [Chlamydophila abortus S26/3]
Length = 434
Score = 311 bits (798), Expect = 1e-82, Method: Composition-based stats.
Identities = 149/430 (34%), Positives = 240/430 (55%), Gaps = 9/430 (2%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+L+ I D + EK I R V++ + +++ AA+ +++ V INP+TGDI +F
Sbjct: 2 NKDLVAIFDYMEKEKGIQRPVIIGAIESALKIAAKKTLRDDANVSVNINPKTGDIEVFCE 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
E+VE EN + +I L AR+ DP +IG + P FGR+A +A+Q+I QK+R A
Sbjct: 62 KEIVEVCENPSKEIPLDKAREYDPECEIGQYMDVPFVSEHFGRIAAHAARQIIGQKLRHA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
ERD Y E++ +V EI+SG VKR + N+I+DLG +G++ E + GD++ +
Sbjct: 122 ERDVIYEEYRHRVNEILSGVVKRFAKGSNLIIDLGKVEGLLPARCYPKTEKHKVGDKIYA 181
Query: 185 YIYD-VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+Y+ E G +V+LSR+HP+F+ +LF EVPE+ G V++ ++R+ G R K+AV S
Sbjct: 182 LLYEVQESENGGAEVILSRSHPEFVKQLFLQEVPELEEGSVEIVKIAREAGYRTKIAVSS 241
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
SD DPVGA VGMRGSRV+ ++ EL DEKIDIV +SP + + N L P + K+ + E
Sbjct: 242 SDPKTDPVGAFVGMRGSRVKNIIRELNDEKIDIVNYSPVTTELLQNLLCPIEIQKIAVLE 301
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
D I ++V + IG+RG N RL SQ+ + +++ E + + + +F
Sbjct: 302 DDKVIAIVVQDADYATVIGQRGINARLISQILDYELEVQRMSEYNKLLEIQRLQLAEFDS 361
Query: 364 QAINVDEIIA-------HLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416
++ + LV G+ + ++ +++AS+ G E A +I + +Y
Sbjct: 362 PLLDEPLEMEGISKLVVQNLVHAGYDTIRKVLLASANDLASVPGISLELAYKILEQVSKY 421
Query: 417 LEGIDITLQK 426
EG K
Sbjct: 422 GEGKVDEKPK 431
>gi|329942818|ref|ZP_08291597.1| transcription termination factor NusA [Chlamydophila psittaci
Cal10]
gi|332287410|ref|YP_004422311.1| transcription elongation factor NusA [Chlamydophila psittaci 6BC]
gi|313847990|emb|CBY16987.1| N utilization substance protein A [Chlamydophila psittaci RD1]
gi|325507005|gb|ADZ18643.1| transcription elongation factor NusA [Chlamydophila psittaci 6BC]
gi|328815078|gb|EGF85067.1| transcription termination factor NusA [Chlamydophila psittaci
Cal10]
gi|328914659|gb|AEB55492.1| N utilization substance protein A [Chlamydophila psittaci 6BC]
Length = 434
Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats.
Identities = 149/430 (34%), Positives = 240/430 (55%), Gaps = 9/430 (2%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+L+ I D + EK I R V++ + +++ AA+ +++ V INP+TGDI +F
Sbjct: 2 NKDLVAIFDYMEKEKGIQRPVIIGAIESALKIAAKKTLRDDANVSVNINPKTGDIEVFCE 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
E+VE EN + +I L AR+ DP +IG + P FGR+A +A+Q+I QK+R A
Sbjct: 62 KEIVEVCENPSKEIPLDKAREYDPECEIGQYMDVPFVSEHFGRIAAHAARQIIGQKLRHA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
ERD Y E++ +V EI+SG VKR + N+I+DLG +G++ E + GD++ +
Sbjct: 122 ERDVIYEEYRHRVNEILSGVVKRFAKGSNLIIDLGKVEGLLPARCYPKTEKHKVGDKIYA 181
Query: 185 YIYD-VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+Y+ E G +V+LSR+HP+F+ +LF EVPE+ G V++ ++R+ G R K+AV S
Sbjct: 182 LLYEVQESENGGAEVILSRSHPEFVKQLFLQEVPELEEGSVEIVKIAREAGYRTKIAVSS 241
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
SD DPVGA VGMRGSRV+ ++ EL DEKIDIV +SP + + N L P + K+ + E
Sbjct: 242 SDPKTDPVGAFVGMRGSRVKNIIRELNDEKIDIVNYSPVTTELLQNLLCPIEIQKIAILE 301
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
D I ++V + IG+RG N RL SQ+ + +++ E + + + +F
Sbjct: 302 DDKVIAIVVQDADYATVIGKRGINARLISQILDYELEVQRMSEYNKLLEIQRLQLAEFDS 361
Query: 364 QAINVDEIIA-------HLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416
++ + LV G+ + ++ +++AS+ G E A +I + +Y
Sbjct: 362 PLLDEPLEMEGISKLVVQNLVHAGYDTIRKVLLASANDLASVPGISLELAYKILEQVSKY 421
Query: 417 LEGIDITLQK 426
EG K
Sbjct: 422 GEGKVDEKPK 431
>gi|330444480|ref|YP_004377466.1| transcription termination factor NusA [Chlamydophila pecorum E58]
gi|328807590|gb|AEB41763.1| transcription termination factor NusA [Chlamydophila pecorum E58]
Length = 435
Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats.
Identities = 144/431 (33%), Positives = 238/431 (55%), Gaps = 10/431 (2%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+L+ I D + EK I R ++S + +++ AA+ ++I V INP TGDI +F
Sbjct: 2 NKDLIAIFDYMEKEKGIQRTTIISAIESALKIAAKKTLRDDANISVNINPRTGDIEVFCE 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
E+V+ N + +I L AR+ DP +IG + P +FGR+A +A+Q+I QK+R A
Sbjct: 62 KEIVDFCNNPSKEIPLDKAREFDPDCEIGQYMDVPFVSENFGRIAAHTARQIIGQKLRYA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
ERD Y E++ +V EI+SG VKR + N+I+DLG + ++ E + GD++ +
Sbjct: 122 ERDVIYEEYRHRVNEILSGVVKRFVKGSNLIIDLGKVEAILPARFYPKTEKHKIGDKIYA 181
Query: 185 YIYD-VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+Y+ + G +V+LSR+HP+F+ +LF EVPE+ G+V + ++R+PG R KLAV S
Sbjct: 182 LLYEVQELDNGGAEVILSRSHPEFVKQLFLQEVPELEEGVVSIVKIAREPGYRTKLAVSS 241
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
SD DPVGA VGMRG+RV+ ++ EL DEKIDIV +S + N L P + K+ + E
Sbjct: 242 SDFKTDPVGAFVGMRGARVKNIIRELNDEKIDIVNYSSTPTELLQNLLYPIEIQKIAILE 301
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
D I ++V + IG+RG N RL SQ+ + +++ E + + + +F
Sbjct: 302 DDKVIAIVVNDADYATVIGKRGINARLISQILDYELEVQRMSEYNKLLEIQRLQLAEFDS 361
Query: 364 QAI--------NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415
+ + +++ L G+ + ++ S+++S+ G E A +I + +
Sbjct: 362 PQLDQPLQEIEGISKLVIQNLEHAGYDTIRKVLLASASDLSSVPGIGLELAYKILEQVSK 421
Query: 416 YLEGIDITLQK 426
Y EG +
Sbjct: 422 YGEGKVDEKPE 432
>gi|168184627|ref|ZP_02619291.1| N utilization substance protein A [Clostridium botulinum Bf]
gi|237795857|ref|YP_002863409.1| transcription elongation factor NusA [Clostridium botulinum Ba4
str. 657]
gi|182672266|gb|EDT84227.1| N utilization substance protein A [Clostridium botulinum Bf]
gi|229261617|gb|ACQ52650.1| N utilization substance protein A [Clostridium botulinum Ba4 str.
657]
Length = 439
Score = 310 bits (795), Expect = 3e-82, Method: Composition-based stats.
Identities = 158/437 (36%), Positives = 267/437 (61%), Gaps = 7/437 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDIS 61
E ++ + EK I D++ + + D++ A + Y G+ ++++V +N E G+I
Sbjct: 2 NQEFVEALKEIVKEKGISADLLFTTIEDALVTAYKKNYAKQGGSTNNVKVIMNRENGEIK 61
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
++ +VV+ VE +ISL+ A++ DP+ ++ +++ + P FGR+A Q+AKQV+IQ+
Sbjct: 62 VYAQKKVVDFVEEEVEEISLEDAKEIDPNYELEDIINIEVTPKKFGRIAAQAAKQVVIQR 121
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
++E ER Y E+ +K +I++GTV R + GN+++++G S+ V+ +E I E R ++
Sbjct: 122 IKEEERRIVYNEYIEKEEDILTGTVLRKDKGNILINVGKSEAVLGPNEQIPGEQFRFNEK 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K Y+ +V+ +GPQVL+SRTHP + +LF +EVPEIYNGIV++K+++R+ GSR K+AV
Sbjct: 182 IKLYVVEVKNTTKGPQVLISRTHPGLVKRLFELEVPEIYNGIVEIKSIAREAGSRTKIAV 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
+S+D ++DP+GACVG +G RVQ +V EL++EKIDI+ WS + NAL PA V V +
Sbjct: 242 YSNDEAVDPMGACVGPKGVRVQNIVNELKNEKIDIIKWSKFPDELICNALSPAKVIDVTI 301
Query: 302 -DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
DE+ +V+V QLSLAIG+ GQNVRLA++LTGW IDI ++ + + +E
Sbjct: 302 VDEENKAAKVVVDDSQLSLAIGKEGQNVRLAAKLTGWKIDIKSKSQAEKEGTLNSSETKD 361
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA--REYLE 418
+ ++ + + E + + I E S+ E+ E + +E +E
Sbjct: 362 EKILEDKKEDKEDRIDLKEEIDNTVKNVKEYIEEDISVSEDKEDITEEDVNSSEDKEDIE 421
Query: 419 GIDITLQKKIRELGVSE 435
++I +K I E+ E
Sbjct: 422 EVNIDTEKAIEEIFKDE 438
>gi|46198657|ref|YP_004324.1| transcription elongation factor NusA [Thermus thermophilus HB27]
gi|55980670|ref|YP_143967.1| transcription elongation factor NusA [Thermus thermophilus HB8]
gi|1352608|sp|P48514|NUSA_THET8 RecName: Full=Transcription elongation protein nusA
gi|642364|emb|CAA88036.1| NusA protein [Thermus thermophilus]
gi|46196280|gb|AAS80697.1| N utilization substance protein A [Thermus thermophilus HB27]
gi|55772083|dbj|BAD70524.1| N utilization substance protein A (NusA) [Thermus thermophilus HB8]
Length = 387
Score = 310 bits (795), Expect = 3e-82, Method: Composition-based stats.
Identities = 139/384 (36%), Positives = 218/384 (56%), Gaps = 12/384 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----------GTMSDIRVEINP 55
E ++ +A E+ + + +L ++++KA G ++ V I+P
Sbjct: 2 NREFVEAMQHLALERGVSVEEILEAFKEALRKAYIKRQKGYKKEEIDQGKGPEVDVYIDP 61
Query: 56 ETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAK 115
+G I + + VVE+VE+ +I+L A DP + +G + P+ P + R+A+Q +
Sbjct: 62 NSGRIEMVEVRRVVEKVEDPDKEIALAEALQYDPEVQVGDEMEFPINPEELSRMAIQDLR 121
Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRE 174
Q++ Q+++E+ER+R Y E+KDK G++++G V RV+ GNV V+LG + + R E I E
Sbjct: 122 QILTQRLKESERNRIYNEYKDKEGQVLTGVVTRVDNRGNVFVELGRGEAYLPRSEQIPTE 181
Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234
PG R+K Y+ V + +GP +L+SR H + + L EVPEI GIV++KA++R+PG
Sbjct: 182 KYHPGQRIKVYLKKVDKSAKGPSLLVSRAHEKLLEHLLKQEVPEIAEGIVEIKAIAREPG 241
Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294
R+K+AV S + ++DP+GAC+G +G R+QAV EL EK+DI++WS D F+ NAL PA
Sbjct: 242 RRSKVAVTSHNPNVDPIGACIGHKGQRIQAVSAELGREKVDIILWSKDPKEFIRNALSPA 301
Query: 295 IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354
V + LD + + V V K+Q SLAIG GQNVRLAS+LTG+ I E E S +
Sbjct: 302 QVGSIELDPEAKKARVKVTKDQHSLAIGTGGQNVRLASKLTGYDIH-FEEAEISDLDEAL 360
Query: 355 FNERTQFFMQAINVDEIIAHLLVA 378
+ L
Sbjct: 361 RRAAEEEAEARERKAREEFEKLFR 384
>gi|194467745|ref|ZP_03073731.1| NusA antitermination factor [Lactobacillus reuteri 100-23]
gi|194452598|gb|EDX41496.1| NusA antitermination factor [Lactobacillus reuteri 100-23]
Length = 393
Score = 310 bits (795), Expect = 3e-82, Method: Composition-based stats.
Identities = 142/373 (38%), Positives = 218/373 (58%), Gaps = 25/373 (6%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E++ D + EK I +++V+ + +++ A + YG ++ VE N TG+I ++ +
Sbjct: 7 NTEMIGALDYLEKEKGIKKEIVIEALEQALESAYKQNYG-DKNVEVEFNSLTGNIKVYAV 65
Query: 66 LEVVEEVE----NYTCQISLKVARDR--DPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119
+ ++ E + +SL AR DIG + + + P DFGR+A Q+AKQV++
Sbjct: 66 KTITDDEEAVEADSNEFMSLADARKLPHGQGYDIGDEIREEVTPRDFGRIAAQTAKQVVM 125
Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRP 178
Q++RE ER Y ++K EII+G V R + VDLG +G + + + E+
Sbjct: 126 QRLREEERKIIYDKYKTYENEIITGEVSREDKRFTYVDLGDGVEGAMGFRDKMPNEHYHV 185
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
DR++ Y+ V ++RGPQ+ +SRT P+ + +LF EVPEI +G V ++ ++R+ G RAK
Sbjct: 186 HDRIQVYVTKVNDDRRGPQIFVSRTAPELLKRLFEREVPEIKDGTVLIENIAREAGDRAK 245
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV+S+D ++DPVG CVG RGSRVQA+V EL E +DIV + D A F+ NAL PA V
Sbjct: 246 VAVYSNDPNVDPVGTCVGPRGSRVQAIVNELDGENMDIVEYVKDPAKFIANALNPAEVLD 305
Query: 299 VVLDEDV-----------------GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
V+ +ED V+VP QLSLAIG+RGQN RLA++LT + IDI
Sbjct: 306 VIFNEDKPASENEESEETTEGQTERSCTVVVPDNQLSLAIGKRGQNARLAARLTKYKIDI 365
Query: 342 ITEEEDSINRQKD 354
+E E + N Q+
Sbjct: 366 KSESEMAENDQES 378
>gi|227499286|ref|ZP_03929398.1| transcription termination factor NusA [Anaerococcus tetradius ATCC
35098]
gi|227218637|gb|EEI83871.1| transcription termination factor NusA [Anaerococcus tetradius ATCC
35098]
Length = 407
Score = 310 bits (795), Expect = 3e-82, Method: Composition-based stats.
Identities = 147/403 (36%), Positives = 245/403 (60%), Gaps = 7/403 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+ + D + EK++D+ +L + ++ K+ + Y ++ V I+ ETG I ++ L
Sbjct: 2 NNDFMLALDELCKEKNLDKPTILDALQKALIKSYQKNYDNQENVDVIIDEETGKIEVYAL 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
E+V+EV + +ISLK AR +P+ +G + L P +FGRVA Q+A+ ++IQK+R+A
Sbjct: 62 KEIVDEVNDNIVEISLKDARVINPTYRLGDIARIKLTPKNFGRVAAQTARNIVIQKIRDA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
+RD Y E+ ++ E+I+GT++R + NV V+L +G++ E +S E P R+K
Sbjct: 122 QRDSLYGEYIERANEMITGTIQREDKYNVYVNLDKIEGIVPAKEQVSTEKYLPNARMKFL 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I +VR + PQ++LSR + +LF +EVPEI +GI+++ +++R+ GSR K+AVFS+D
Sbjct: 182 IKEVRNSSKEPQIILSRASQDLITRLFELEVPEITDGIIEIYSLAREAGSRTKMAVFSND 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+ID +GAC+G +G+RV ++V EL+ EKIDI+ + D F+ NAL PA + KV+++E
Sbjct: 242 ENIDAIGACIGFKGARVNSIVEELQGEKIDIINFDKDIKVFISNALSPADIIKVLVNEKN 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
+ V+V +QLSLAIG+ GQN RLA++LTGW IDI + EE Q D +E
Sbjct: 302 KQSLVVVASDQLSLAIGKEGQNARLAARLTGWKIDIKSSEEFEKLSQVDIDEI------- 354
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408
+ ++E+ ++E +E + + E +E+ E
Sbjct: 355 LGLNELDEESQLSEESLSKDEEDLEVSEDYDNKEPVEEDYIGE 397
>gi|94985335|ref|YP_604699.1| transcription elongation factor NusA [Deinococcus geothermalis DSM
11300]
gi|94555616|gb|ABF45530.1| NusA antitermination factor [Deinococcus geothermalis DSM 11300]
Length = 395
Score = 310 bits (795), Expect = 3e-82, Method: Composition-based stats.
Identities = 131/388 (33%), Positives = 216/388 (55%), Gaps = 3/388 (0%)
Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70
VA ++I+ ++ S+ +A + V ++P +G++ + + EVVE
Sbjct: 10 DALREVAQARNINELQLIEAFEQSLAQAYSRNVEPDRRVEVHLDPVSGELEVLIVREVVE 69
Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130
+VE+ QISL A + DP ++IG + P+ F R+A+Q+AKQ + QK+RE ER+
Sbjct: 70 KVEDENLQISLADALELDPGVEIGMEMEFPVDREKFSRIALQAAKQTLTQKMRETERNVV 129
Query: 131 YLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDV 189
Y E+KD+ G++++ V R + N V+LG + ++ E I E L PG+RVK Y+ +V
Sbjct: 130 YNEYKDREGQVLTAQVVRSDNKGNWFVELGAGEAILPPREQIPGEKLVPGNRVKIYLKEV 189
Query: 190 RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSID 249
R+ +GP +L SR + + L E+PE+ NGIV++KA++R+ G R+K+AV+S + ++D
Sbjct: 190 RKTPKGPTILASRADERLLEYLLRQEIPEVANGIVEIKAIAREAGQRSKVAVYSHNPNVD 249
Query: 250 PVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIE 309
P+GAC+G RG+R+QAV EL E++D+++W ++ F+ NAL PA V + + D
Sbjct: 250 PIGACIGHRGNRIQAVTGELGRERVDVILWDANARDFIRNALSPAKVGLIEVRPDTREAT 309
Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVD 369
V V +QLSLAIG+ GQNVRLA++LTG+ ID+ +
Sbjct: 310 VTVTPDQLSLAIGKGGQNVRLAAKLTGFKIDLRETAAIQDLDAAMQQALQEEQGNTGPSS 369
Query: 370 EIIAHLLVAEGFADVEELACVKISEIAS 397
+ F D + +A +
Sbjct: 370 AAASA--FDALFRDSKSVATASPDDEQE 395
>gi|29840227|ref|NP_829333.1| transcription elongation factor NusA [Chlamydophila caviae GPIC]
gi|29834575|gb|AAP05211.1| N utilization substance protein A [Chlamydophila caviae GPIC]
Length = 434
Score = 310 bits (794), Expect = 4e-82, Method: Composition-based stats.
Identities = 149/430 (34%), Positives = 237/430 (55%), Gaps = 9/430 (2%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+L+ I D + EK I R V++ + +++ AA+ +++ V INP TGDI +F
Sbjct: 2 NKDLVAIFDYMEKEKGIQRPVIIGAIESALKIAAKKTLRDDANVSVNINPRTGDIEVFCE 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
E+VE EN + +I L AR+ DP IG + P FGR+A +A+Q+I QK+R A
Sbjct: 62 KEIVEVCENPSKEIPLDKAREYDPECQIGQYMDVPFVSEHFGRIAAHAARQIIGQKLRHA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
ERD Y E++ +V EI+SG VKR + N+I+DLG +G++ E + GD++ +
Sbjct: 122 ERDVIYEEYRHRVNEILSGVVKRFAKGSNLIIDLGKVEGLLPARCYPKTEKHKVGDKIYA 181
Query: 185 YIYD-VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+ + E G +V+LSR+HP+F+ +LF EVPE+ G V++ ++R+ G R KLAV S
Sbjct: 182 LLQEVQESENGGAEVILSRSHPEFVKQLFLQEVPELEEGFVEIVKIAREAGYRTKLAVSS 241
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
SD DPVGA VGMRGSRV+ ++ EL DEKIDIV +SP + + N L P + K+ + E
Sbjct: 242 SDPKTDPVGAFVGMRGSRVKNIIRELNDEKIDIVNYSPVTTELLQNLLCPIEIQKIAILE 301
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
D I ++V + IG+RG N RL SQ+ + +++ E + + + +F
Sbjct: 302 DDKVIAIVVHDADYATVIGKRGINARLISQILDYELEVQRMSEYNKLLEIQRLQLAEFDN 361
Query: 364 QAINVDEIIA-------HLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416
++ + LV G+ + ++ +++AS+ G E A +I + +Y
Sbjct: 362 PQLDEPLDMEGISKLVVQNLVHAGYDTIRKVLLASANDLASVPGISLELAYKILEQVSKY 421
Query: 417 LEGIDITLQK 426
EG K
Sbjct: 422 GEGKVDEKPK 431
>gi|255611947|ref|XP_002539363.1| Transcription elongation protein nusA, putative [Ricinus communis]
gi|223506838|gb|EEF23020.1| Transcription elongation protein nusA, putative [Ricinus communis]
Length = 316
Score = 310 bits (794), Expect = 4e-82, Method: Composition-based stats.
Identities = 203/316 (64%), Positives = 250/316 (79%)
Query: 208 MVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVT 267
MVKLF MEVP IY+GI+QV++V+RDPGSRAK+AV S+DSSIDPVGACVGMRGSRVQAVV
Sbjct: 1 MVKLFTMEVPGIYDGIIQVRSVARDPGSRAKIAVISNDSSIDPVGACVGMRGSRVQAVVG 60
Query: 268 ELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQN 327
EL+ EKIDI+ WS D ATFV+NAL+PA V KVVLDED RIEV+VP EQLSLAIGRRGQN
Sbjct: 61 ELQGEKIDIIPWSQDPATFVVNALQPAEVAKVVLDEDAERIEVVVPDEQLSLAIGRRGQN 120
Query: 328 VRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEEL 387
VRLASQLTGW IDI+TE E+S RQK+FNERT FM A++VDE++ +L +EGFA VEEL
Sbjct: 121 VRLASQLTGWDIDIMTEAEESERRQKEFNERTNLFMDALDVDEMVGQVLASEGFAAVEEL 180
Query: 388 ACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKI 447
A V + EIASI+GFDE+TA EIQ RAREYLE ++ + +K + LGV++EL I GI +++
Sbjct: 181 AYVDLDEIASIDGFDEDTAQEIQTRAREYLEKLEAEMDEKRKALGVTDELRQINGITAQM 240
Query: 448 KVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARY 507
VALGE+GIKT+ED AGC+ DDL+GW+E K G +KF+G S + + E M++ AR
Sbjct: 241 MVALGEDGIKTVEDFAGCAADDLVGWTERKNGETKKFEGLFSKFDVSRVEAEQMVVQARL 300
Query: 508 KMGWIEKEKVADEEVQ 523
GWI +E +A E
Sbjct: 301 LAGWITEEDLAKEAEA 316
>gi|257066114|ref|YP_003152370.1| NusA antitermination factor [Anaerococcus prevotii DSM 20548]
gi|256797994|gb|ACV28649.1| NusA antitermination factor [Anaerococcus prevotii DSM 20548]
Length = 433
Score = 310 bits (794), Expect = 4e-82, Method: Composition-based stats.
Identities = 140/365 (38%), Positives = 227/365 (62%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+ + D + EK++D+ +L + ++ K+ + Y ++ V I+ ETG I +F L
Sbjct: 2 NNDFMLALDELCKEKNLDKATILDALQKALIKSYQKNYDNEENVDVIIDEETGQIEVFAL 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
EVV+EV++ +ISLK A + + S +G + L P +FGRVA Q+A+ ++IQK+R+A
Sbjct: 62 KEVVDEVDDTITEISLKDALEENSSYHLGDIARIKLTPKNFGRVAAQTARNIVIQKIRDA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
+RD Y E+ ++ E+I+GT++R + NV V+L +GV+ E + E ++K
Sbjct: 122 QRDSLYGEYIERANEMITGTIQRQDKYNVYVNLDKIEGVVPIKEQVPTEEYPANAKMKFL 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I +VR + PQ++LSR+ + +LF +EVPEI +GI+++ +++R+ GSR K+AVFS+D
Sbjct: 182 IKEVRNSSKEPQIVLSRSSQDLITRLFELEVPEITDGIIEIYSLAREAGSRTKMAVFSND 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
ID VGAC+G +G RV ++V EL+ EKIDI+ + D F+ NAL PA + +V+++E
Sbjct: 242 EGIDAVGACIGFKGIRVNSIVEELQGEKIDIINFDKDIKVFISNALSPADIIEVLVNEKS 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
+ V+V +QLSLAIG+ GQN RLA++LTGW IDI + EE Q++ +E
Sbjct: 302 KKSLVVVSSDQLSLAIGKEGQNARLAARLTGWKIDIKSSEEYESLSQEEIDEILGLNEID 361
Query: 366 INVDE 370
E
Sbjct: 362 EEASE 366
>gi|153938223|ref|YP_001391719.1| transcription elongation factor NusA [Clostridium botulinum F str.
Langeland]
gi|152934119|gb|ABS39617.1| N utilization substance protein A [Clostridium botulinum F str.
Langeland]
gi|295319745|gb|ADG00123.1| N utilization substance protein A [Clostridium botulinum F str.
230613]
Length = 439
Score = 310 bits (793), Expect = 5e-82, Method: Composition-based stats.
Identities = 158/437 (36%), Positives = 266/437 (60%), Gaps = 7/437 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDIS 61
E ++ + EK I D++ + + D++ A + Y G+ ++++V +N E G+I
Sbjct: 2 NQEFVEALREIVKEKGISADLLFTTIEDALVTAYKKNYAKQGGSTNNVKVIMNRENGEIK 61
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
++ +VV+ VE +ISL+ A++ DP+ ++ +++ + P FGR+A Q+AKQV+IQ+
Sbjct: 62 VYAQKKVVDFVEEEVEEISLEDAKEIDPNYELEDIINIEVTPKKFGRIAAQAAKQVVIQR 121
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
++E ER Y E+ +K +I++GTV R + GN+++++G S+ V+ +E I E R ++
Sbjct: 122 IKEEERRIVYNEYIEKEEDILTGTVLRKDKGNILINVGKSEAVLGPNEQIPGEQFRFNEK 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K Y+ +V+ +GPQVL+SRTHP + +LF +EVPEIYNGIV++K+++R+ GSR K+AV
Sbjct: 182 IKLYVVEVKNTTKGPQVLISRTHPGLVKRLFELEVPEIYNGIVEIKSIAREAGSRTKIAV 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
+S+D ++DP+GACVG +G RVQ +V EL++EKIDI+ WS + NAL PA V V +
Sbjct: 242 YSNDEAVDPMGACVGPKGVRVQNIVNELKNEKIDIIKWSKFPDELICNALSPAKVIDVTI 301
Query: 302 -DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
DE+ +V+V QLSLAIG+ GQNVRLA++LTGW IDI ++ + + +E
Sbjct: 302 VDEENKAAKVVVDDSQLSLAIGKEGQNVRLAAKLTGWKIDIKSKSQAEKEGTLNSSETKD 361
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA--REYLE 418
+ ++ + + E + E I + S+ E E + +E +E
Sbjct: 362 EKILENKKEDKEDKIDLKEEIDNTVENVKEYIEKDISVSEDKENITEEDVNSSEDKEDIE 421
Query: 419 GIDITLQKKIRELGVSE 435
++I +K I E+ E
Sbjct: 422 EVNIDTEKAIEEIFKDE 438
>gi|302865966|ref|YP_003834603.1| transcription termination factor NusA [Micromonospora aurantiaca
ATCC 27029]
gi|302568825|gb|ADL45027.1| transcription termination factor NusA [Micromonospora aurantiaca
ATCC 27029]
Length = 347
Score = 310 bits (793), Expect = 5e-82, Method: Composition-based stats.
Identities = 134/354 (37%), Positives = 201/354 (56%), Gaps = 27/354 (7%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
L A+ E+ I D +L+ + ++ A R G RVEI+ ++G S++
Sbjct: 5 LAALRALEREREIPFDTILAAIETALLTAYRHTDGAEPHARVEIDRKSGAASVY------ 58
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
A++ D + P DFGR+A +AKQVI+Q++REA +
Sbjct: 59 --------------AQELDADGTV--TREWDDTPHDFGRIAAMTAKQVILQRLREATDEV 102
Query: 130 QYLEFKDKVGEIISGTVK----RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
+ E+ + G++++G V+ R E G V VDLG +GV+ + E + E G+R++
Sbjct: 103 HFGEYVGRDGDLVTGVVQAHETRREKGIVSVDLGKLEGVLPQSEQVPGERYEHGERIRCV 162
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ V + RGPQ+ LSR+HP + KLF +EVPEI +G V++ A++R+ G R K+AV S+
Sbjct: 163 VVHVAKGMRGPQITLSRSHPALVKKLFALEVPEIADGTVEIGAIAREAGHRTKIAVRSTT 222
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDED 304
S ++ GAC+G G RV+AV++EL EKIDI+ WS D ATFV NAL PA +V +D
Sbjct: 223 SGVNAKGACIGPMGQRVRAVMSELHGEKIDIIDWSDDPATFVGNALSPAKALRVEVVDLA 282
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
V VP QLSLAIGR GQN RLA++LTGW IDI ++ E + + + +
Sbjct: 283 SRTARVTVPDFQLSLAIGREGQNARLAARLTGWRIDIRSDAETAAPQSRGGADH 336
>gi|217077786|ref|YP_002335504.1| transcription elongation factor NusA [Thermosipho africanus TCF52B]
gi|217037641|gb|ACJ76163.1| transcription termination factor NusA [Thermosipho africanus
TCF52B]
Length = 344
Score = 310 bits (793), Expect = 5e-82, Method: Composition-based stats.
Identities = 133/339 (39%), Positives = 212/339 (62%), Gaps = 1/339 (0%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
L+ LQ + + EK + D ++ V+ ++ A + +G ++ + IN +TG+I ++L
Sbjct: 2 NLDFLQALEQLEEEKGVKVDEIIPVIEKALISAYKKDFGGEKNVEIIINRQTGEIEAYQL 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
LEVVE VE QISL+ A + S IG +V L FGR+A Q+AKQV+IQK+RE
Sbjct: 62 LEVVENVEKPNLQISLEEALKINSSAKIGDIVKKRLNIKKFGRIAAQTAKQVLIQKIREI 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
E+++Q+ ++ + G+I + V RV + +G + + + E I E ++P +K Y
Sbjct: 122 EKEKQFEKYSELAGKITTAEVVRVTKDWADIRIGKLETRLPKKEWIPGEEIQPASLIKVY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ DV+++++GP++L++R + +F+ L +EVPEI + +V+V + R+PG R K+AV S++
Sbjct: 182 VKDVKKDKKGPKILVTRINEEFIKGLLELEVPEIESKVVEVVKIVREPGIRTKVAVKSNN 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304
+DPVGAC+G G R+ A++ EL EKIDI+ WS D + +AL+PA V +V + D +
Sbjct: 242 PKVDPVGACIGEEGIRIAAILKELNGEKIDIIKWSDDPKELIASALQPANVIEVEILDYE 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343
VIV QLSLAIG+ GQN RLA++LTGW IDI
Sbjct: 302 NKASRVIVSPNQLSLAIGKGGQNARLAAKLTGWKIDIKP 340
>gi|312127897|ref|YP_003992771.1| transcription termination factor nusa [Caldicellulosiruptor
hydrothermalis 108]
gi|311777916|gb|ADQ07402.1| transcription termination factor NusA [Caldicellulosiruptor
hydrothermalis 108]
Length = 357
Score = 310 bits (793), Expect = 5e-82, Method: Composition-based stats.
Identities = 136/351 (38%), Positives = 213/351 (60%), Gaps = 8/351 (2%)
Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM----SDIRVEINPETG 58
+ + EL D + E I++D V SV+ ++ A + + G S+++V I+PE G
Sbjct: 7 TLDFQELFSAIDELEREYKIEKDYVYSVLESALLTAYKQVKGIKDKNLSNVKVSIDPEKG 66
Query: 59 DISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+ ++ +VVE V++ +ISL+ A+ D +G +V+ +P F R A + +Q +
Sbjct: 67 SVKIYEYRKVVENVKDRKSEISLEDAQKIDKRYKVGDIVAIEVPISQFSRKAAMTVRQTV 126
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENL 176
I K+RE R + ++ KV I++G V+R++ NVIV++ G + ++ +E I E
Sbjct: 127 IGKIREKRRSIIFEDYSSKVDNIVTGVVQRIDKKNVIVEIEGGKVEAILPMEEQIPGEEY 186
Query: 177 RPGDRVKSYIYDVRREQRGPQ--VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234
+PG +K YI +VR + + V LSRTHP + +L EVPEI GI+++KA++R+ G
Sbjct: 187 KPGVMMKFYITEVRIPPKEKEPIVYLSRTHPNLIKRLMENEVPEIQEGIIEIKAIAREAG 246
Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294
SR+K+AV+S+ +DPVGAC+G +G R+Q V+ L EKIDIV WS D F+ NAL PA
Sbjct: 247 SRSKVAVYSNSLKVDPVGACIGEKGIRIQNVLKHLNGEKIDIVKWSSDIGEFIKNALSPA 306
Query: 295 IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345
V + L+ + V+VP QLSLAIG+ GQN RLA++LTGW IDI ++
Sbjct: 307 EVVHIDLNLIEKKAFVLVPNSQLSLAIGKGGQNARLAAKLTGWKIDIKGKD 357
>gi|117928724|ref|YP_873275.1| transcription elongation factor NusA [Acidothermus cellulolyticus
11B]
gi|117649187|gb|ABK53289.1| NusA antitermination factor [Acidothermus cellulolyticus 11B]
Length = 348
Score = 310 bits (793), Expect = 6e-82, Method: Composition-based stats.
Identities = 127/352 (36%), Positives = 199/352 (56%), Gaps = 24/352 (6%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ ++ EK I D+++ + ++ A + G RV ++ +TG++++
Sbjct: 5 MAALRSLEREKDISFDLLVQAIETALLTAYQRTEGAYPRARVVLDRKTGEVTVL------ 58
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
A + D ++ + P DF R+A +AKQVI+Q++R+AE +
Sbjct: 59 --------------AAETDAEGNV--IREFDHTPQDFNRIAAMTAKQVILQRLRDAEHEL 102
Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
+ E+ + G+++ G +++ + NV V+LG +GV+ E + E G+R++ Y+
Sbjct: 103 TFGEYAGREGDVVGGIIQQQHDSRNVYVNLGKVEGVLPVTEQVPGERYVHGERIRCYVLS 162
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V + RGPQ+ LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S +
Sbjct: 163 VHKGIRGPQITLSRTHPGLVRKLFALEVPEIADGSVEIVALAREAGHRTKIAVRSKVPGL 222
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307
+ GAC+G G RV+AV+ EL EKIDI+ +S D ATFV NAL PA VT V + D
Sbjct: 223 NAKGACIGPLGQRVRAVMAELHGEKIDIIDYSDDPATFVANALSPARVTSVEIVDPVTKS 282
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
VIVP QLSLAIGR GQN RLA++LTGW IDI + E +++ +
Sbjct: 283 ARVIVPDYQLSLAIGREGQNARLAARLTGWRIDIRPDTEAALSPGDADGQHP 334
>gi|295112228|emb|CBL28978.1| NusA antitermination factor [Synergistetes bacterium SGP1]
Length = 364
Score = 309 bits (792), Expect = 6e-82, Method: Composition-based stats.
Identities = 134/353 (37%), Positives = 220/353 (62%), Gaps = 3/353 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
+ +Q + +A E+++ ++++S + ++ A + + V +N ETGDI + L
Sbjct: 6 DFVQALNQIAEERNLAPELIVSSLEAALISAYKKYQSGDQRVEVHVNTETGDILVEELRT 65
Query: 68 VVEEVENYTCQISLKVARDRD-PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
VVEE+E+ +I+L A+ +G + P FGR+A Q+A+QVIIQ++++AE
Sbjct: 66 VVEELESPDTEITLGDAKRLGFADASVGDELHLEKDPGHFGRIAAQTARQVIIQRLKDAE 125
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSY 185
R Y EF DKVGE+++GT+ + E V+ +G ++ ++ R E I E PG +K Y
Sbjct: 126 RQVIYSEFSDKVGEMMTGTIVKAENDQVLARIGERTEAILPRKERIPGEEYVPGQTMKFY 185
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ DVR+ RGP++++SRTHP + KL +E+PE+ +G+++++ + R+ G RAK+++ + D
Sbjct: 186 VLDVRQMTRGPKIVISRTHPGLLRKLMELEIPEVRDGVIEIRNIVREGGGRAKVSLSTMD 245
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDED 304
++DPVGACVG G+R++A+ EL EK+DI+VWS D ++ NAL PA V KV + +
Sbjct: 246 QNVDPVGACVGAGGARIKAISQELMGEKVDIIVWSSDPLAYIRNALSPAQVVKVEPVLDQ 305
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
+ V EQLSLAIG+ GQNVRLA++LTGW IDI + + + +D
Sbjct: 306 EHAAKAYVEPEQLSLAIGKAGQNVRLAARLTGWKIDINALQAERMPTLQDIFH 358
>gi|218296560|ref|ZP_03497288.1| NusA antitermination factor [Thermus aquaticus Y51MC23]
gi|218243102|gb|EED09634.1| NusA antitermination factor [Thermus aquaticus Y51MC23]
Length = 385
Score = 309 bits (792), Expect = 6e-82, Method: Composition-based stats.
Identities = 140/379 (36%), Positives = 221/379 (58%), Gaps = 11/379 (2%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL----------YGTMSDIRVEINP 55
E ++ +A E+ + + VL ++++KA G ++ V I+P
Sbjct: 2 NREFIEALQQLALERGVSAEEVLEAFKEALRKAYIKRQKGYKKEEVEEGKGPEVDVYIDP 61
Query: 56 ETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAK 115
+TG I + + VVE+VE+ +ISL A DP + +G + P+ P RVA+Q +
Sbjct: 62 QTGRIEMVEVRRVVEKVEDPDKEISLAEALQYDPEVQLGDEMEFPIDPEGLSRVAIQDLR 121
Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRE 174
Q++ Q+++E+ER+R + E+KDK G++++G V RV+ GNV VDLG + + + E I E
Sbjct: 122 QLLTQRLKESERNRIFNEYKDKEGQVLTGVVTRVDNRGNVFVDLGRGEAYLPKSEQIPTE 181
Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234
PG R+K+Y+ V R +GP +++SR H + + L EVPEI GIV++KA++R+PG
Sbjct: 182 RYYPGQRLKAYLKKVDRSAKGPSLIVSRAHEKLLEHLLKQEVPEIAEGIVEIKAIAREPG 241
Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294
R+K+AV S + ++DP+GAC+G +G R+QAV EL EK+DI++WS D F+ NAL PA
Sbjct: 242 RRSKVAVTSHNPNVDPIGACIGHKGQRIQAVSAELGREKVDIILWSKDPKEFIRNALSPA 301
Query: 295 IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354
V + LD + + V V K+Q SLAIG GQNVRLAS+LTG+ I E ++
Sbjct: 302 QVGSIELDPEAKKARVKVTKDQHSLAIGTGGQNVRLASKLTGYDIHFEEAEISDLDEAIR 361
Query: 355 FNERTQFFMQAINVDEIIA 373
+ + + +E
Sbjct: 362 RAAQEEAEEKTRAKEEFEK 380
>gi|330466360|ref|YP_004404103.1| transcription elongation factor NusA [Verrucosispora maris
AB-18-032]
gi|328809331|gb|AEB43503.1| transcription elongation factor NusA [Verrucosispora maris
AB-18-032]
Length = 347
Score = 309 bits (792), Expect = 6e-82, Method: Composition-based stats.
Identities = 137/344 (39%), Positives = 199/344 (57%), Gaps = 27/344 (7%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
L A+ E+ I D +L+ + ++ A R G S RVEI+ ++G ++
Sbjct: 5 LAALRALEREREIPFDTILAAIETALLTAYRHTEGAQSHARVEIDRKSGAALVY------ 58
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
A++ DP G V P DFGR+A +AKQVI+Q++REA +
Sbjct: 59 --------------AQEMDPEG--GVVREWDDTPHDFGRIAAMTAKQVILQRLREATDEV 102
Query: 130 QYLEFKDKVGEIISGTVK----RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
+ E+ + G++++G V+ R E G V VDLG +GV+ + E + E G+R++
Sbjct: 103 HFGEYVGRDGDLVTGVVQAHEARAEKGIVTVDLGKLEGVLPQSEQVPGERYTHGERIRCV 162
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ V + RGPQ+ LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+
Sbjct: 163 VVHVAKGMRGPQITLSRTHPNLVKKLFALEVPEIADGTVEISAIAREAGHRTKIAVRSTT 222
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDED 304
++ GAC+G G RV+AV++EL EKIDI+ WS D ATFV NAL PA +V +D
Sbjct: 223 PGVNAKGACIGPMGQRVRAVMSELHGEKIDIIDWSDDPATFVGNALSPAKALRVEVVDLA 282
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
V VP QLSLAIGR GQN RLA++LTGW IDI ++ E +
Sbjct: 283 NRAARVTVPDFQLSLAIGREGQNARLAARLTGWRIDIRSDAEQA 326
>gi|315502523|ref|YP_004081410.1| nusa antitermination factor [Micromonospora sp. L5]
gi|315409142|gb|ADU07259.1| NusA antitermination factor [Micromonospora sp. L5]
Length = 347
Score = 309 bits (792), Expect = 6e-82, Method: Composition-based stats.
Identities = 134/354 (37%), Positives = 201/354 (56%), Gaps = 27/354 (7%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
L A+ E+ I D +L+ + ++ A R G RVEI+ ++G S++
Sbjct: 5 LAALRALEREREIPFDTILAAIETALLTAYRHTDGAEPHARVEIDRKSGAASVY------ 58
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
A++ D + P DFGR+A +AKQVI+Q++REA +
Sbjct: 59 --------------AQELDADGTV--TREWDDTPHDFGRIAAMTAKQVILQRLREATDEV 102
Query: 130 QYLEFKDKVGEIISGTVK----RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
+ E+ + G++++G V+ R E G V VDLG +GV+ + E + E G+R++
Sbjct: 103 HFGEYVGRDGDLVTGVVQAHETRREKGIVSVDLGKLEGVLPQSEQVPGERYEHGERIRCV 162
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ V + RGPQ+ LSR+HP + KLF +EVPEI +G V++ A++R+ G R K+AV S+
Sbjct: 163 VVHVAKGMRGPQITLSRSHPALVKKLFALEVPEIADGTVEIGAIAREAGHRTKIAVRSTT 222
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDED 304
S ++ GAC+G G RV+AV++EL EKIDI+ WS D ATFV NAL PA +V +D
Sbjct: 223 SGVNAKGACIGPMGQRVRAVMSELHGEKIDIIDWSDDPATFVGNALSPAKALRVEVVDLA 282
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
V VP QLSLAIGR GQN RLA++LTGW IDI ++ E + + + +
Sbjct: 283 SRTARVTVPDFQLSLAIGREGQNARLAARLTGWRIDIRSDAETAAPQSRGGADH 336
>gi|281491260|ref|YP_003353240.1| transcription antitermination factor [Lactococcus lactis subsp.
lactis KF147]
gi|281375001|gb|ADA64519.1| Transcription antitermination factor [Lactococcus lactis subsp.
lactis KF147]
Length = 382
Score = 309 bits (792), Expect = 7e-82, Method: Composition-based stats.
Identities = 135/346 (39%), Positives = 216/346 (62%), Gaps = 1/346 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + +K I ++V+ + +I A + YG +++V + + G+ +++ E
Sbjct: 4 EMLNAFAMLEEQKGIKSEIVIEAIEQAITAAYKRQYGQAQNVKVIFDEKKGNFNVYSTRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISL+ A + +P +IG + P DF R A +AKQVI+QK+RE ER
Sbjct: 64 VVDEVFDSRLEISLEDAHELNPHYEIGDKIMFEEKPKDFARTAAGAAKQVIMQKMREEER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y E+ EII GTV++V+ V V+LG D ++ + + I +EN GDRVK Y+
Sbjct: 124 TIIYNEYSRYKDEIIQGTVEKVDARAVYVNLGRVDALLTKKDQIPQENFHVGDRVKVYVT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
DV +G +V +SRT P + ++F E+PE+++G V++K+++RD G RAK+ V S D +
Sbjct: 184 DVVLTPKGTRVFISRTAPDMLKRMFEKEIPEVFDGTVEIKSIARDAGDRAKVIVQSHDEN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+D +G VG +GSR+Q ++ EL EK+DI+ WS D AT V NAL+PA + +V++ D G
Sbjct: 244 VDAIGTMVGAKGSRIQGIIHELAGEKMDIIEWSEDKATLVANALKPARIEQVLITAD-GS 302
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353
+V ++QLSLAIG+RGQNVRLA+ +T IDI +E +++ +
Sbjct: 303 SLAVVARDQLSLAIGKRGQNVRLAAHVTNSKIDIKAADEFNMDDYE 348
>gi|146297077|ref|YP_001180848.1| NusA antitermination factor [Caldicellulosiruptor saccharolyticus
DSM 8903]
gi|145410653|gb|ABP67657.1| NusA antitermination factor [Caldicellulosiruptor saccharolyticus
DSM 8903]
Length = 356
Score = 309 bits (792), Expect = 7e-82, Method: Composition-based stats.
Identities = 134/347 (38%), Positives = 215/347 (61%), Gaps = 8/347 (2%)
Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM----SDIRVEINPETG 58
+ + EL D + E I+R+ + SV+ ++ A + + G S+++V I+PE G
Sbjct: 7 TTDFQELFSAIDELEREYKIEREYIYSVLESALLTAYKQVRGIKDKNLSNVKVSIDPEKG 66
Query: 59 DISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
D+ +F +VVE V++ +IS++ AR D +G +V+ +P DF R A + +Q +
Sbjct: 67 DVKIFEYKKVVENVKDKRNEISVEDARKIDKRYQVGDIVAIEVPISDFSRKAAMTVRQTV 126
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENL 176
I K+RE +R+ + ++ K+ I++G ++R++ NVIV++ G + ++ +E I E
Sbjct: 127 IGKIREKKRNIIFEDYSAKIDNIVTGVIQRIDKKNVIVEIEGGKVEAILPMEEQIPGEEY 186
Query: 177 RPGDRVKSYIYDVRREQRGPQ--VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234
+PG +K Y+ DV+ + + V LSRTHP + +L EVPEI GI+++K ++R+ G
Sbjct: 187 KPGTMMKFYLVDVKIPPKEKEPIVYLSRTHPNLIKRLMENEVPEIQEGIIEIKGIAREAG 246
Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294
SR+K+AV+S+ +DPVGAC+G +G R+Q V+ L EKIDIV WS D F+ NAL PA
Sbjct: 247 SRSKVAVYSNSLKVDPVGACIGEKGIRIQNVLKYLGSEKIDIVRWSSDIGEFIKNALSPA 306
Query: 295 IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
V + L+ + V+VP +QLSLAIG+ GQN RLA++LTGW IDI
Sbjct: 307 EVVHIDLNLVEKKAFVLVPNDQLSLAIGKGGQNARLAAKLTGWKIDI 353
>gi|307297718|ref|ZP_07577524.1| transcription termination factor NusA [Thermotogales bacterium
mesG1.Ag.4.2]
gi|306916978|gb|EFN47360.1| transcription termination factor NusA [Thermotogales bacterium
mesG1.Ag.4.2]
Length = 342
Score = 309 bits (791), Expect = 9e-82, Method: Composition-based stats.
Identities = 133/339 (39%), Positives = 209/339 (61%), Gaps = 1/339 (0%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
L LL+ D + EK+I+++ V+ ++ ++Q A + + + SD+ V I+ TGDI +F
Sbjct: 2 NLNLLEALDQLQDEKNIEKEEVIDILEKALQSAYKKNFASESDVDVRIDRLTGDIEVFEK 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
L VVE VEN + ++ L+ A D S +IG V L F R+A Q+A+QV+IQK+RE
Sbjct: 62 LLVVEAVENPSLEVKLEEALKLDSSAEIGSTVERKLNIKKFKRIAAQTARQVLIQKIREK 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
E++ + ++ D G + + V RV + + +G + I E I E R +K Y
Sbjct: 122 EKENLFDKYVDMKGTVTTSEVLRVTDEWIDLRIGKLETRIPTKELIPGEQPRLNSLMKVY 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ DV + RGP++L++R P F+++L ++VPEI +G V VKA++R+ G R K+AVFS +
Sbjct: 182 VVDVTKSVRGPRLLVTRRTPDFVIELLKLQVPEIASGDVTVKAIAREEGIRTKVAVFSQN 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304
+ +DPVGAC+G G+R+ V+ E++ EK+DI+ WS + A FV N++ PA +V + + +
Sbjct: 242 TKVDPVGACIGESGTRIAEVLREIKPEKVDILRWSDNPAEFVGNSIAPASALEVKVANIE 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343
V V QLSLAIG+ GQN RLA++LTGW IDI
Sbjct: 302 NHEATVFVSPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340
>gi|166154318|ref|YP_001654436.1| transcription elongation factor NusA [Chlamydia trachomatis 434/Bu]
gi|166155193|ref|YP_001653448.1| transcription elongation factor NusA [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|301335569|ref|ZP_07223813.1| transcription elongation factor NusA [Chlamydia trachomatis L2tet1]
gi|2160697|gb|AAB58904.1| NusA [Chlamydia trachomatis]
gi|165930306|emb|CAP03792.1| N utilization substance protein A [Chlamydia trachomatis 434/Bu]
gi|165931181|emb|CAP06746.1| N utilization substance protein A [Chlamydia trachomatis
L2b/UCH-1/proctitis]
Length = 434
Score = 308 bits (790), Expect = 1e-81, Method: Composition-based stats.
Identities = 147/428 (34%), Positives = 236/428 (55%), Gaps = 9/428 (2%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+L+ I D + EK I R ++ + +++ AA+ +++ V INP TGDI +F
Sbjct: 2 NKDLVAIFDYMEREKGIQRSTIVGAIESALKIAAKKTLRDDANVSVSINPRTGDIEVFCE 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
++VE+ +N + +I L AR+ DP IG + P FGR+A +A+Q+I QK+R A
Sbjct: 62 KQIVEKCQNPSKEIPLDKAREYDPDCQIGQYMDVPFISDQFGRIAAHAARQIIGQKLRHA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
ERD Y E++ + EIISG VK G N++VDLG +G++ E + GD++ +
Sbjct: 122 ERDVIYEEYRHRKNEIISGVVKSFARGANLVVDLGKVEGLLPARFYPKTEKHKVGDKIYA 181
Query: 185 YIYD-VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+Y+ E G +V+LSR+HP+F+ +LF EVPE+ G V++ ++R+ G R K+AV S
Sbjct: 182 LLYEVQESENGGAEVILSRSHPEFVKQLFVQEVPELEEGSVEIVKIAREAGYRTKMAVRS 241
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
SD D VGA VGMRGSR++ ++ EL DEKID+V +SP S + N L P + K+ + E
Sbjct: 242 SDPQTDAVGAFVGMRGSRIKNIIRELNDEKIDVVNYSPVSTELLQNLLYPVEIQKIAILE 301
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
D I +IV + IG+RG N RL SQ+ G+ +++ E + + + +F
Sbjct: 302 DDKVIAIIVQDSDYATVIGKRGINARLISQILGYELEVQRMSEYNKLLEIQRLQLAEFED 361
Query: 364 QAI-------NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416
+ ++ +I L G+ + ++ SE+AS+ G E A +I + +Y
Sbjct: 362 PRLDQPLEVEGINTLIVQNLEHAGYDTIRKILLASASELASVPGISLELAYKILEQVSKY 421
Query: 417 LEGIDITL 424
EG
Sbjct: 422 GEGKVDEK 429
>gi|255348459|ref|ZP_05380466.1| transcription elongation factor NusA [Chlamydia trachomatis 70]
gi|255503001|ref|ZP_05381391.1| transcription elongation factor NusA [Chlamydia trachomatis 70s]
Length = 434
Score = 308 bits (790), Expect = 1e-81, Method: Composition-based stats.
Identities = 147/428 (34%), Positives = 236/428 (55%), Gaps = 9/428 (2%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+L+ I D + EK I R ++ + +++ AA+ +++ V INP TGDI +F
Sbjct: 2 NKDLVAIFDYMEREKGIQRSTIVGAIESALKIAAKKTLRDDANVSVSINPRTGDIEVFCE 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
++VE+ +N + +I L AR+ DP IG + P FGR+A +A+Q+I QK+R A
Sbjct: 62 KQIVEKCQNPSKEIPLDKAREYDPDCQIGQYMDVPFISDQFGRIAAHAARQIIGQKLRHA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
ERD Y E++ + EIISG VK G N++VDLG +G++ E + GD++ +
Sbjct: 122 ERDVIYEEYRHRKNEIISGVVKSFARGANLVVDLGKVEGLLPARFYPKTEKHKVGDKIYA 181
Query: 185 YIYD-VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+Y+ E G +V+LSR+HP+F+ +LF EVPE+ G V++ ++R+ G R K+AV S
Sbjct: 182 LLYEVQESENGGAEVILSRSHPEFVKQLFVQEVPELEEGSVEIVKIAREAGYRTKMAVRS 241
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
SD D VGA VGMRGSR++ ++ EL DEKID+V +SP S + N L P + K+ + E
Sbjct: 242 SDPQTDAVGAFVGMRGSRIKNIIRELNDEKIDVVNYSPVSTELLQNLLYPVEIQKIAILE 301
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
D I +IV + IG+RG N RL SQ+ G+ +++ E + + + +F
Sbjct: 302 DDKVIAIIVQDSDYATVIGKRGINARLISQILGYELEVQRVSEYNKLLEIQRLQLAEFED 361
Query: 364 QAI-------NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416
+ ++ +I L G+ + ++ SE+AS+ G E A +I + +Y
Sbjct: 362 PRLDQPLEVEGINTLIVQNLEHAGYDTIRKILLASASELASVPGISLELAYKILEQVSKY 421
Query: 417 LEGIDITL 424
EG
Sbjct: 422 GEGKVDEK 429
>gi|15672746|ref|NP_266920.1| transcription elongation factor NusA [Lactococcus lactis subsp.
lactis Il1403]
gi|12723682|gb|AAK04862.1|AE006310_4 transcription termination protein NusA [Lactococcus lactis subsp.
lactis Il1403]
Length = 382
Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats.
Identities = 135/346 (39%), Positives = 216/346 (62%), Gaps = 1/346 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + +K I ++V+ + +I A + YG +++V + + G+ +++ E
Sbjct: 4 EMLNAFAMLEEQKGIKSEIVIEAIEQAITAAYKRQYGQAQNVKVIFDEKKGNFNVYSTRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISL+ A + +P +IG + P DF R A +AKQVI+QK+RE ER
Sbjct: 64 VVDEVFDSRLEISLEDAHELNPHYEIGDKIMFEEKPKDFARTAAGAAKQVIMQKMREEER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y E+ EII GTV++V+ V V+LG D ++ + + I +EN GDRVK Y+
Sbjct: 124 TIIYNEYSRYKDEIIQGTVEKVDARAVYVNLGRVDALLTKKDQIPQENFHVGDRVKVYVT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
DV +G +V +SRT P + ++F E+PE+++G V++K+++RD G RAK+ V S D +
Sbjct: 184 DVVLTPKGTRVFISRTAPDMLKRMFEKEIPEVFDGTVEIKSIARDAGDRAKVIVQSHDEN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+D +G VG +GSR+Q ++ EL EK+DI+ WS D AT V NAL+PA + +V++ D G
Sbjct: 244 VDAIGTMVGTKGSRIQGIIRELAGEKMDIIEWSEDKATLVANALKPARIEQVLITAD-GS 302
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353
+V ++QLSLAIG+RGQNVRLA+ +T IDI +E +++ +
Sbjct: 303 SLAVVARDQLSLAIGKRGQNVRLAAHVTNSKIDIKAADEFNLDDYE 348
>gi|222529041|ref|YP_002572923.1| NusA antitermination factor [Caldicellulosiruptor bescii DSM 6725]
gi|222455888|gb|ACM60150.1| NusA antitermination factor [Caldicellulosiruptor bescii DSM 6725]
Length = 357
Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats.
Identities = 134/351 (38%), Positives = 214/351 (60%), Gaps = 8/351 (2%)
Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM----SDIRVEINPETG 58
+ + EL D + E I++D V SV+ ++ A + + G S+++V I+PE G
Sbjct: 7 TLDFQELFSAIDELEREYKIEKDYVYSVLESALLTAYKQVKGIKDKNLSNVKVSIDPEKG 66
Query: 59 DISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+ ++ +VVE V++ +ISL+ A+ D IG +V+ +P F R A + +Q +
Sbjct: 67 SVKIYEYRKVVENVKDRKNEISLEDAQKIDKRYKIGDIVAIEIPISQFSRKAAMTVRQTV 126
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENL 176
I K+RE +R + ++ K+ I++G ++R++ NVIV++ G + ++ +E I E
Sbjct: 127 IGKIREKKRSIIFEDYSSKIDNIVTGIIQRIDKKNVIVEIEGGKVEAILPMEEQIPGEEY 186
Query: 177 RPGDRVKSYIYDVRREQRGPQ--VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234
+PG +K Y+ DV+ + + V LSRTHP + +L EVPEI GI+++KA++R+ G
Sbjct: 187 KPGTLMKFYLVDVKIPPKEKEPIVYLSRTHPNLIKRLMENEVPEIQEGIIEIKAIAREAG 246
Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294
SR+K+AV+S+ +DPVGAC+G +G R+Q V+ L EKIDIV WS D F+ NAL PA
Sbjct: 247 SRSKVAVYSNSLKVDPVGACIGEKGIRIQNVLKHLNGEKIDIVKWSSDIGEFIKNALSPA 306
Query: 295 IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345
V + L+ + V+VP QLSLAIG+ GQN RLA++LTGW IDI ++
Sbjct: 307 EVVHIDLNLIEKKAFVLVPNSQLSLAIGKGGQNARLAAKLTGWKIDIKGKD 357
>gi|312622703|ref|YP_004024316.1| nusa antitermination factor [Caldicellulosiruptor kronotskyensis
2002]
gi|312203170|gb|ADQ46497.1| NusA antitermination factor [Caldicellulosiruptor kronotskyensis
2002]
Length = 357
Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats.
Identities = 134/351 (38%), Positives = 214/351 (60%), Gaps = 8/351 (2%)
Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM----SDIRVEINPETG 58
+ + EL D + E I++D V SV+ ++ A + + G S+++V I+PE G
Sbjct: 7 TLDFQELFSAIDELEREYKIEKDYVYSVLESALLTAYKQVKGIKDKNLSNVKVSIDPEKG 66
Query: 59 DISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+ ++ +VVE V++ +ISL+ A+ D IG +V+ +P F R A + +Q +
Sbjct: 67 SVKIYEYRKVVENVKDRKNEISLEDAQKIDKRYKIGDIVAIEVPISQFSRKAAMTVRQTV 126
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENL 176
I K+RE +R + ++ K+ I++G ++R++ NVIV++ G + ++ +E I E
Sbjct: 127 IGKIREKKRSIIFEDYSSKIDNIVTGIIQRIDKKNVIVEIEGGKVEAILPMEEQIPGEEY 186
Query: 177 RPGDRVKSYIYDVRREQRGPQ--VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234
+PG +K Y+ DV+ + + V LSRTHP + +L EVPEI GI+++KA++R+ G
Sbjct: 187 KPGTLMKFYLVDVKIPPKEKEPIVYLSRTHPNLIKRLMENEVPEIQEGIIEIKAIAREAG 246
Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294
SR+K+AV+S+ +DPVGAC+G +G R+Q V+ L EKIDIV WS D F+ NAL PA
Sbjct: 247 SRSKVAVYSNSLKVDPVGACIGEKGIRIQNVLKHLNGEKIDIVKWSSDIGEFIKNALSPA 306
Query: 295 IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345
V + L+ + V+VP QLSLAIG+ GQN RLA++LTGW IDI ++
Sbjct: 307 EVVHIDLNLIEKKAFVLVPNSQLSLAIGKGGQNARLAAKLTGWKIDIKGKD 357
>gi|326406315|gb|ADZ63386.1| transcription antitermination factor [Lactococcus lactis subsp.
lactis CV56]
Length = 382
Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats.
Identities = 135/346 (39%), Positives = 216/346 (62%), Gaps = 1/346 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + +K I ++V+ + +I A + YG +++V + + G+ +++ E
Sbjct: 4 EMLNAFAMLEEQKGIKSEIVIEAIEQAITAAYKRQYGQAQNVKVIFDEKKGNFNVYSTRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISL+ A + +P +IG + P DF R A +AKQVI+QK+RE ER
Sbjct: 64 VVDEVFDSRLEISLEDAHELNPHYEIGDKIMFEEKPKDFARTAAGAAKQVIMQKMREEER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y E+ EII GTV++V+ V V+LG D ++ + + I +EN GDRVK Y+
Sbjct: 124 TIIYNEYSRYKDEIIQGTVEKVDARAVYVNLGRVDALLTKKDQIPQENFHVGDRVKVYVT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
DV +G +V +SRT P + ++F E+PE+++G V++K+++RD G RAK+ V S D +
Sbjct: 184 DVVLTPKGTRVFISRTAPDMLKRMFEKEIPEVFDGTVEIKSIARDAGDRAKVIVQSHDEN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+D +G VG +GSR+Q ++ EL EK+DI+ WS D AT V NAL+PA + +V++ D G
Sbjct: 244 VDAIGTMVGAKGSRIQGIIRELAGEKMDIIEWSEDKATLVANALKPARIEQVLITAD-GS 302
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353
+V ++QLSLAIG+RGQNVRLA+ +T IDI +E +++ +
Sbjct: 303 SLAVVARDQLSLAIGKRGQNVRLAAHVTNSKIDIKAADEFNLDDYE 348
>gi|325126000|gb|ADY85330.1| Transcription termination-antitermination factor [Lactobacillus
delbrueckii subsp. bulgaricus 2038]
Length = 468
Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats.
Identities = 137/361 (37%), Positives = 217/361 (60%), Gaps = 3/361 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ D + K I +DV++ M ++ A + YG ++ ++ N + GD + L
Sbjct: 66 EMLEAFDVLEKTKGIKQDVIVEAMKAALAAAYKKNYGLAENVEIDFNEKKGDFKVMALKT 125
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV++ ++SLK A + + ++G + + P +FGR A +AKQV++Q++REAE
Sbjct: 126 VVDEVQDDRVEVSLKDALAINRAYEVGDTIKFEVTPKNFGRTAAATAKQVVMQRLREAEN 185
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVI-RRDETISRENLRPGDRVKSYI 186
E+ E+++GTV+R + V V++GN + V+ + +TI E+ P DRV+ +
Sbjct: 186 AHIVNEYSQYEDELVTGTVERTDNRFVYVNIGNVEAVMDIKCDTIPGEHYNPQDRVRVLV 245
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
V + +G Q+ +SRT P + + F EVPEI++G V++ +++R+ G R K+AV S+D
Sbjct: 246 TKVGADGKGAQIRVSRTPPDVVKRFFEQEVPEIFDGTVEIMSIAREAGERTKIAVKSNDP 305
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE--D 304
+IDPVG CVG RGSRVQ VV L E IDIV + D + ++ NAL PA V V ++ D
Sbjct: 306 NIDPVGTCVGPRGSRVQNVVNALGGENIDIVQYEEDPSDYIANALNPAEVIAVQFEDEDD 365
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+ VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E + + + T+
Sbjct: 366 ERKAFVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDESEVEDETEVAED 425
Query: 365 A 365
Sbjct: 426 Q 426
>gi|169350438|ref|ZP_02867376.1| hypothetical protein CLOSPI_01206 [Clostridium spiroforme DSM 1552]
gi|169292758|gb|EDS74891.1| hypothetical protein CLOSPI_01206 [Clostridium spiroforme DSM 1552]
Length = 432
Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats.
Identities = 155/401 (38%), Positives = 236/401 (58%), Gaps = 9/401 (2%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLLE 67
++ + + EK I++DV L ++ +SI KA + Y + +++RVEIN +TG LF L
Sbjct: 6 FMEALNLLIEEKGIEKDVFLEMLKESIAKAYKKNYLNSDANVRVEINEKTGKFRLFELRT 65
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+++E+ ++SL+ A+ +P IG VV GR+A KQ+ QK+RE E+
Sbjct: 66 VVDDLEDEDLELSLEEAQAINPFYKIGDVVETEADVEHIGRLAAIQTKQLFRQKIRETEK 125
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y EF DK +II+G V RVE IV++G + + ++ I E L+ G +K Y+
Sbjct: 126 ETLYNEFADKKDDIITGIVDRVEDKFAIVNIGKTGAFLALNQQIPGEKLKEGQHLKVYVC 185
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
DV R +G +++SRT P F+ +LF +EVPE+++G V++KAVSR+PG R+K+AV++S+ +
Sbjct: 186 DVDRGTKGTHIVVSRTEPNFVKRLFELEVPEVFDGTVEIKAVSREPGERSKIAVYASNEN 245
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
IDP+G+CVG +GSRV+ VV EL E IDI++WS D F+ NAL P+ V V ++E
Sbjct: 246 IDPIGSCVGPKGSRVKNVVDELNGEMIDIIIWSNDPVEFISNALSPSEVKYVSINEKDHS 305
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
VIVP +QLSLAIG+RGQN RLA +LTGW IDI + E N ++ +
Sbjct: 306 ALVIVPDDQLSLAIGKRGQNARLAVRLTGWKIDIKSVSEALENGLIT--------LEELE 357
Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408
+ E FA + ++ I D+E
Sbjct: 358 SKSVPVDASFEEQFAQEMLENNDEANDEEVIVKNDDEIIDA 398
>gi|312793236|ref|YP_004026159.1| nusa antitermination factor [Caldicellulosiruptor kristjanssonii
177R1B]
gi|312180376|gb|ADQ40546.1| NusA antitermination factor [Caldicellulosiruptor kristjanssonii
177R1B]
Length = 357
Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats.
Identities = 137/351 (39%), Positives = 213/351 (60%), Gaps = 8/351 (2%)
Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM----SDIRVEINPETG 58
+ + EL D + E IDRD V SV+ ++ A + + G S+++V I+PE G
Sbjct: 7 TLDFQELFSAIDELEREYKIDRDYVYSVLESALLTAYKQVKGIKDKNLSNVKVSIDPEKG 66
Query: 59 DISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+ ++ +VVE V++ +ISL+ A+ D +G +V+ +P F R A + +Q +
Sbjct: 67 SVKIYEYRKVVENVKDRKSEISLEDAQKIDKRYKVGDIVAIEVPISQFSRKAAMTVRQTV 126
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENL 176
I K+RE R + + K+ I++G ++R++ NVIV++ G + ++ +E IS E
Sbjct: 127 IGKIREKRRSIIFENYSSKIDNIVTGVIQRIDKKNVIVEIEGGKVEAILPMEEQISGEEY 186
Query: 177 RPGDRVKSYIYDVRREQRGPQ--VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234
+PG +K YI DV+ + + V LSRTHP + +L EVPEI GI+++KA++R+ G
Sbjct: 187 KPGTMMKFYITDVKIPPKEKEPIVYLSRTHPNLIKRLMENEVPEIQEGIIEIKAIAREAG 246
Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294
SR+K+AV+S+ +DPVGAC+G +G R+Q V+ L EKIDIV WS D F+ NAL PA
Sbjct: 247 SRSKVAVYSNSLKVDPVGACIGEKGIRIQNVLKHLNGEKIDIVKWSSDIGEFIKNALSPA 306
Query: 295 IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345
V + L+ + V+VP QLSLAIG+ GQN RLA++LTGW IDI ++
Sbjct: 307 EVVHIDLNLIEKKAFVLVPNSQLSLAIGKGGQNARLAAKLTGWKIDIKGKD 357
>gi|268316867|ref|YP_003290586.1| NusA antitermination factor [Rhodothermus marinus DSM 4252]
gi|262334401|gb|ACY48198.1| NusA antitermination factor [Rhodothermus marinus DSM 4252]
Length = 421
Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats.
Identities = 145/410 (35%), Positives = 230/410 (56%), Gaps = 12/410 (2%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
EL+ +A+ K IDRD + ++ D + R YG+ + NP+ GDI + +
Sbjct: 3 NSELVSSFAEIAHSKGIDRDTLQLIVEDVFRAMIRKRYGSDEAFEIIFNPDHGDIQILHI 62
Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
EVV + +E+ QI L AR DP ++G V+ + +FGR A+ +A+Q Q++R
Sbjct: 63 REVVPDWELEDPVTQIELSEARKIDPDFEVGDEVASEVNIAEFGRRAIMTARQTFSQRIR 122
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183
+ E+++ Y E+ + +GEI+ G + ++ V+V ++ ++ R+E I R+ R GD ++
Sbjct: 123 DLEKEKIYQEYSELIGEIVVGEIYQIRRREVLVMHNRTELILPREEQIPRDRYRKGDTLR 182
Query: 184 SYIYDVRRE-QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
+ + +VRRE PQV++SR P F+ +L +EVPEI GIV+VK + R+PG RAK+AV
Sbjct: 183 AIVKEVRREAGGAPQVIISRADPVFLERLLELEVPEIEEGIVEVKKIVREPGERAKVAVV 242
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
S D +DPVGACVG+RG+R+ A+V EL +E ID++ WS D + AL PA V L+
Sbjct: 243 SHDERVDPVGACVGLRGNRIHAIVRELSNENIDVIEWSDDPRELIKRALTPARPLSVTLN 302
Query: 303 EDVG--RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
E+ R +V+V +++S AIGR G N+RLAS+LTG+ +D+ E +
Sbjct: 303 EEANPPRAKVVVRADEVSQAIGRGGVNIRLASRLTGYELDVYREIRPDEEDIEIEE---- 358
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410
A +DE I L G + + + E+ G D ETA +
Sbjct: 359 ---FADELDEEIIARLREIGCDTARAVLDLSVEELMRRSGLDAETARRVM 405
>gi|312876952|ref|ZP_07736927.1| NusA antitermination factor [Caldicellulosiruptor lactoaceticus 6A]
gi|311796267|gb|EFR12621.1| NusA antitermination factor [Caldicellulosiruptor lactoaceticus 6A]
Length = 357
Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats.
Identities = 133/351 (37%), Positives = 212/351 (60%), Gaps = 8/351 (2%)
Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM----SDIRVEINPETG 58
+ + EL D + E I++D V SV+ ++ A + + G S+++V I+PE G
Sbjct: 7 TLDFQELFSAIDELEREYKIEKDYVYSVLESALLTAYKQVKGIKDKNLSNVKVSIDPEKG 66
Query: 59 DISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+ ++ +VVE V++ +ISL+ A+ D +G +V+ +P F R A + +Q +
Sbjct: 67 SVKIYEYRKVVENVKDRKSEISLEDAQKIDKRYKVGDIVAIEVPISQFSRKAAMTVRQTV 126
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENL 176
I K+RE R + + K+ I++G ++R++ NVIV++ G + ++ +E I E
Sbjct: 127 IGKIREKRRSIIFENYSSKIDNIVTGVIQRIDKKNVIVEIEGGKVEAILPMEEQIPGEEY 186
Query: 177 RPGDRVKSYIYDVRREQRGPQ--VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234
+PG +K YI +V+ + + V LSRTHP + +L EVPEI GI+++KA++R+ G
Sbjct: 187 KPGTMMKFYITEVKIPPKEKEPIVYLSRTHPNLIKRLMENEVPEIQEGIIEIKAIAREAG 246
Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294
SR+K+AV+S+ +DPVGAC+G +G R+Q V+ L EKIDIV WS D F+ NAL PA
Sbjct: 247 SRSKVAVYSNSLKVDPVGACIGEKGIRIQNVLKHLNGEKIDIVKWSSDIGEFIKNALSPA 306
Query: 295 IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345
V + L+ + V+VP QLSLAIG+ GQN RLA++LTGW IDI ++
Sbjct: 307 EVVHIDLNLIEKKAFVLVPNSQLSLAIGKGGQNARLAAKLTGWKIDIKGKD 357
>gi|259503125|ref|ZP_05746027.1| N utilization substance protein A [Lactobacillus antri DSM 16041]
gi|259168991|gb|EEW53486.1| N utilization substance protein A [Lactobacillus antri DSM 16041]
Length = 389
Score = 307 bits (787), Expect = 3e-81, Method: Composition-based stats.
Identities = 135/386 (34%), Positives = 218/386 (56%), Gaps = 20/386 (5%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
++ D + EK I +++V+ + +++ A + YG ++ VE N TG+I ++ + +
Sbjct: 1 MIGALDYLEKEKGIKKEIVIEALEQALESAYKQNYG-DKNVEVEFNATTGNIKVYAVKTI 59
Query: 69 VEEVE----NYTCQISLKVARDR--DPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
++ E + +SL AR D+ + + + P +FGR+A Q+AKQV++Q++
Sbjct: 60 TDDEEKVAADSNQYMSLAEARKLPHGQGYDVDDQIREEVTPRNFGRIAAQTAKQVVMQRL 119
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181
RE ER Y ++K EII+G V R + VDLG +G + + + E+ R DR
Sbjct: 120 REEERRIVYDKYKTYENEIITGEVSREDKRFTYVDLGDGVEGAMGFRDKMPNEHYRVHDR 179
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++ Y+ V ++RGPQ+ +SRT P+ + +LF EVPEI +G V ++ ++R+ G RAK+AV
Sbjct: 180 IQVYVSKVNDDRRGPQIYVSRTAPELLKRLFEREVPEIKDGTVLIENIAREAGDRAKVAV 239
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
+S+D ++DPVG CVG RGSRVQA+V EL E +DIV + D A F+ NAL PA V V+
Sbjct: 240 YSNDDNVDPVGTCVGPRGSRVQAIVNELDGENMDIVEYVKDPAKFIANALNPAEVLDVIF 299
Query: 302 DE------------DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
++ V+VP +QLSLAIG+RGQN RLA++LT + IDI + E
Sbjct: 300 NDPVTIEREDGEEEQERSCTVVVPDDQLSLAIGKRGQNARLAARLTKYKIDIKSASEMEE 359
Query: 350 NRQKDFNERTQFFMQAINVDEIIAHL 375
+ ++ + Q +
Sbjct: 360 IQAQEALDEDQPVADDQPSVDENDQS 385
>gi|134102374|ref|YP_001108035.1| transcription elongation factor NusA [Saccharopolyspora erythraea
NRRL 2338]
gi|291004241|ref|ZP_06562214.1| transcription elongation factor NusA [Saccharopolyspora erythraea
NRRL 2338]
gi|133914997|emb|CAM05110.1| putative transcriptional termination/antitermination factor
[Saccharopolyspora erythraea NRRL 2338]
Length = 352
Score = 307 bits (787), Expect = 3e-81, Method: Composition-based stats.
Identities = 136/346 (39%), Positives = 197/346 (56%), Gaps = 27/346 (7%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ A+ +K I + VL + ++ A R G RVE++ +TG + +
Sbjct: 5 IAALRAIESDKGIPFETVLEAIESALLTAYRHTEGHQPHARVEVDRKTGVVRV------- 57
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
+A + D P FGR+A +A+QVI+Q++R+AE +R
Sbjct: 58 -------------IAHTLGADGTVAEEWDD--TPEGFGRIAATTARQVILQRLRDAEHER 102
Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
+ EF K GEI+ G ++R N VIV +G+S+GVI E + E G R+K Y
Sbjct: 103 TFGEFSTKEGEILGGVIQRDAKANSRGMVIVQVGDSEGVIPAAEQVPGERYEHGMRIKCY 162
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ V R RGPQ+ LSRTHP + +LF +EVPEI +G V++ AV+R+ G R+K+AV S+
Sbjct: 163 VVGVSRSARGPQITLSRTHPNLVRRLFALEVPEIADGTVEIPAVAREAGHRSKIAVRSTV 222
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDED 304
++ GAC+G G+RV+ V++EL EKIDI+ +S D ATFV NAL PA V V +DE
Sbjct: 223 GGVNAKGACIGPMGARVRNVMSELGGEKIDIIDYSDDPATFVGNALSPAKVVSVEVVDER 282
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350
V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ + S
Sbjct: 283 AKTARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDADPSSP 328
>gi|15834991|ref|NP_296750.1| transcription elongation factor NusA [Chlamydia muridarum Nigg]
gi|270285160|ref|ZP_06194554.1| transcription elongation factor NusA [Chlamydia muridarum Nigg]
gi|270289179|ref|ZP_06195481.1| transcription elongation factor NusA [Chlamydia muridarum Weiss]
gi|301336555|ref|ZP_07224757.1| transcription elongation factor NusA [Chlamydia muridarum
MopnTet14]
gi|7190412|gb|AAF39230.1| N utilization substance protein A [Chlamydia muridarum Nigg]
Length = 434
Score = 307 bits (786), Expect = 3e-81, Method: Composition-based stats.
Identities = 142/420 (33%), Positives = 232/420 (55%), Gaps = 9/420 (2%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+L+ I D + EK I R ++ + +++ AA+ +++ V INP TGDI +F
Sbjct: 2 NKDLVAIFDYMEREKGIQRSTIVGAIESALKIAAKKTLRDDANVSVSINPRTGDIEVFCE 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
++VE+ +N + +I L AR+ DP IG + P FGR+A +A+Q+I QK+R A
Sbjct: 62 KQIVEKCQNPSKEIPLDKAREYDPDCQIGQYMDVPFVSDQFGRIAAHAARQIIGQKLRHA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
ERD Y E++ + EIISG +K N++VDLG +G++ E + GD++ +
Sbjct: 122 ERDVIYEEYRHRKNEIISGVIKSFSRGSNLVVDLGKVEGLLPARFYPKTEKHKVGDKIYA 181
Query: 185 YIYD-VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+Y+ E G +V+LSR+HP+F+ +LF EVPE+ G V++ ++R+ G R K+AV S
Sbjct: 182 LLYEVQESENGGAEVILSRSHPEFVKQLFMQEVPELEEGSVEIVKIAREAGYRTKMAVRS 241
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
S D VGA VGMRGSR++ ++ EL DEKID+V +SP S + N L P + K+ + E
Sbjct: 242 SSPQTDAVGAFVGMRGSRIKNIIRELNDEKIDVVNYSPVSTELLQNLLYPVEIQKIAILE 301
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
D I +IV + IG+RG N RL SQ+ G+ +++ E + + + +F
Sbjct: 302 DDKVIAIIVQDSDYATVIGKRGINARLISQILGYELEVQRMSEYNKLLEIQRLQLAEFED 361
Query: 364 QAI-------NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416
+ ++ +I L G+ + ++ SE+AS+ G E A +I + +Y
Sbjct: 362 PRLDQPLEVEGINTLIVQNLEHAGYDTIRKILLASASELASVPGISLELAYKILEQVSKY 421
>gi|57234284|ref|YP_181708.1| transcription elongation factor NusA [Dehalococcoides ethenogenes
195]
gi|57224732|gb|AAW39789.1| N utilization substance protein A [Dehalococcoides ethenogenes 195]
Length = 491
Score = 307 bits (786), Expect = 3e-81, Method: Composition-based stats.
Identities = 137/355 (38%), Positives = 218/355 (61%), Gaps = 1/355 (0%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL-YGTMSDIRVEINPETGDISLFR 64
+ + L ++ EK++ ++VVL+ + ++ A R + +I V+I+ TG + +
Sbjct: 2 KSDFLLAITQLSAEKNLPKEVVLATVESALVSAYRKESFAPNQNIAVKIDQLTGKVKVMA 61
Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VVE+V + ++ L A+ IG ++ P D GR+A Q+AKQVI+Q++ E
Sbjct: 62 EKLVVEKVTDSRQEMRLLEAKRLKADAKIGDLMMVEDTPADAGRIAAQTAKQVILQRLHE 121
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AE + E+ K G+ + G V+R+E + VD+G + ++ E E R G R+K
Sbjct: 122 AENTAIFDEYASKAGDTLVGVVQRIEPKQITVDIGRVEAIMPASEQAYGERYRAGQRIKV 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
Y+ DV + +GP V++SR+HP + +LF MEVPE++N +V++KAV+R+ GSR+K+AV +
Sbjct: 182 YVVDVAKTAKGPAVIVSRSHPGLVRRLFEMEVPEVFNQLVEIKAVAREAGSRSKVAVGAL 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
IDPVG CVG+RG R+Q +V+EL EKID+V W + A F+ N+L PA VTKV+L+E
Sbjct: 242 QPGIDPVGCCVGLRGIRIQNIVSELNGEKIDVVAWDSEIANFIANSLSPAQVTKVILNEA 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
V++P QLSL IG+ GQNVRLA +LTGW IDI + ++ + R ++ +
Sbjct: 302 EKSAIVVIPDRQLSLGIGKEGQNVRLAVKLTGWRIDIKSASDEEVERAEETARKQ 356
>gi|15806798|ref|NP_295520.1| transcription elongation factor NusA [Deinococcus radiodurans R1]
gi|6459575|gb|AAF11353.1|AE002021_2 N-utilization substance protein A [Deinococcus radiodurans R1]
Length = 401
Score = 307 bits (786), Expect = 3e-81, Method: Composition-based stats.
Identities = 138/386 (35%), Positives = 223/386 (57%), Gaps = 3/386 (0%)
Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70
+ VA ++I+ ++ S+Q+A I V ++P++G + + + EVVE
Sbjct: 14 EALREVAQARNINELQLIEAFEQSLQQAYVRNVEPDKRIEVHLDPQSGVLEVLIVREVVE 73
Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130
+VE+ QISL A + DP ++IG + P+ F R+A+Q+AKQ + QK+RE ER+
Sbjct: 74 KVEDEHMQISLADALELDPGVEIGMEMEFPVDQEMFSRIALQAAKQTLTQKMRETERNVV 133
Query: 131 YLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDV 189
+ E+KD+ G++++ V R + N V+LG + ++ E I E L PG RVK Y+ +V
Sbjct: 134 FNEYKDREGQVLNAQVVRSDNKGNWFVELGAGEAILPPREQIPGEKLTPGGRVKIYLKEV 193
Query: 190 RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSID 249
R+ +GP +L SR + + L E+PE+ NGIV+VKA++R+ G R+K+AVFS +S++D
Sbjct: 194 RKTPKGPTILASRADERLLDYLLKQEIPEVANGIVEVKAIAREAGQRSKVAVFSHNSNVD 253
Query: 250 PVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIE 309
P+GAC+G RG+R+QAV EL E++D+++W ++ F+ NAL PA V + + +D
Sbjct: 254 PIGACIGHRGNRIQAVTGELGRERVDVILWDANTREFIRNALSPAKVGPIEVQQDSRDAT 313
Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVD 369
V V +QLSLAIG+ GQNVRLA++LTG+ ID+ S + +
Sbjct: 314 VTVTPDQLSLAIGKGGQNVRLAAKLTGFKIDLRETAAISDLDAAMQQALEEEQQG--GGN 371
Query: 370 EIIAHLLVAEGFADVEELACVKISEI 395
E A F D + +A ++
Sbjct: 372 ENAAQSAFDALFKDSKSVATASPDDV 397
>gi|125624585|ref|YP_001033068.1| transcription elongation factor NusA [Lactococcus lactis subsp.
cremoris MG1363]
gi|124493393|emb|CAL98367.1| transcription elongation factor nusA [Lactococcus lactis subsp.
cremoris MG1363]
gi|300071376|gb|ADJ60776.1| transcription elongation factor NusA [Lactococcus lactis subsp.
cremoris NZ9000]
Length = 382
Score = 307 bits (786), Expect = 3e-81, Method: Composition-based stats.
Identities = 135/346 (39%), Positives = 216/346 (62%), Gaps = 1/346 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + +K I ++V+ + +I A + YG +++V + + G+ +++ E
Sbjct: 4 EMLNAFAMLEEQKGIKSEIVIEAIEQAITAAYKRQYGQAQNVKVIFDEKKGNFNVYSTRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISL+ A + +P +IG + P DF R A +AKQVI+QK+RE ER
Sbjct: 64 VVDEVFDSRLEISLEDAHELNPHYEIGDKIMFEEKPKDFARTAAGAAKQVIMQKMREEER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y E+ EII GTV++V+ V V+LG D ++ + + I +EN GDRVK Y+
Sbjct: 124 TIIYNEYSRYKDEIIQGTVEKVDARAVYVNLGRVDALLTKKDQIPQENFHVGDRVKVYVT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
DV +G +V +SRT P + ++F E+PE+++G V++K+++RD G RAK+ V S D +
Sbjct: 184 DVVLTPKGTRVFISRTAPDMLKRMFEKEIPEVFDGTVEIKSIARDAGDRAKVIVQSHDEN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+D +G VG +GSR+Q ++ EL EK+DI+ WS D AT V NAL+PA + +V++ D G
Sbjct: 244 VDAIGTMVGAKGSRIQGIIRELAGEKMDIIEWSEDKATLVANALKPARIEQVLITAD-GS 302
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353
+V ++QLSLAIG+RGQNVRLA+ +T IDI +E +++ +
Sbjct: 303 SLAVVARDQLSLAIGKRGQNVRLAAHVTNSKIDIKAADEFNMDDYE 348
>gi|225027047|ref|ZP_03716239.1| hypothetical protein EUBHAL_01303 [Eubacterium hallii DSM 3353]
gi|224955511|gb|EEG36720.1| hypothetical protein EUBHAL_01303 [Eubacterium hallii DSM 3353]
Length = 414
Score = 307 bits (786), Expect = 4e-81, Method: Composition-based stats.
Identities = 144/343 (41%), Positives = 226/343 (65%), Gaps = 1/343 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
EL+ + + EK I+++V++ + DS+ A +G + ++V ++ +TGDIS++
Sbjct: 3 ELIDALNQLQKEKHIEKEVIMQAIEDSLVAACNRDFGKNAIVKVNMDRDTGDISVYVEKT 62
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEVE+ +ISL A+ +IG VV+ + P +FGR+A Q A+ VI+QK++E ER
Sbjct: 63 VVEEVEDPATEISLADAKMIRFHYEIGDVVNIEVTPKNFGRIAAQHARSVIVQKIKEEER 122
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186
+ F K +I++G V+R N+ V L +D V+ E + E +P DR+K YI
Sbjct: 123 RVVFEHFAHKEKDIVTGVVQRYNGKNISVSLDDKTDAVLTEKEQVKGEVFKPTDRIKLYI 182
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
+V+ +GP++L+SRTHP+ + +LF EV E+Y+G V++K+++R+ GSR K+AV S+D
Sbjct: 183 VEVKDTNKGPKILVSRTHPELVKRLFEKEVAEVYDGTVEIKSIAREAGSRTKIAVASNDP 242
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
++DPVGACVG+ G+RV A+V++LR EKIDI+ W+ D A + NAL P+ V V +DE+
Sbjct: 243 NVDPVGACVGINGARVNAIVSDLRGEKIDIIEWNDDPAVLIENALSPSNVVSVDVDEEEK 302
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + +
Sbjct: 303 SARVVVPDYQLSLAIGKEGQNARLAAKLTGYKIDIKSESQAAE 345
>gi|322373936|ref|ZP_08048471.1| transcription termination factor NusA [Streptococcus sp. C150]
gi|321277308|gb|EFX54378.1| transcription termination factor NusA [Streptococcus sp. C150]
Length = 396
Score = 306 bits (785), Expect = 4e-81, Method: Composition-based stats.
Identities = 130/349 (37%), Positives = 205/349 (58%), Gaps = 15/349 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + EK I++D ++ + +S++ A + YG VE N +TGD ++ + E
Sbjct: 4 EMLEAFRVLEEEKHINKDDIIEAVVESLKSAYKRRYGQSESAVVEFNEKTGDFQVYTVRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R+ R
Sbjct: 64 VVDEVFDSRLEISLKDALAISSAYELGDKIRFEESVDEFGRVAAQSAKQTIMEKMRKQMR 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y ++K GEI+ GTV+R + + V+LG + + R + I E+ + D + Y+Y
Sbjct: 124 EITYNDYKQHEGEIMQGTVERFDQRFIYVNLGTLEAQLSRQDQIPGESFKSHDVIDVYVY 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + +
Sbjct: 184 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG GS ++ VV+ E ID++ W D A F+ NA+ P
Sbjct: 244 VDAIGTIVGRGGSNIKKVVSRFHPTRLDAKTGIEVPVEENIDVIQWVEDPAEFIYNAIAP 303
Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
A V V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI
Sbjct: 304 AEVDYVLFDENDSKRATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDI 352
>gi|237743254|ref|ZP_04573735.1| transcription elongation factor NusA [Fusobacterium sp. 7_1]
gi|256028609|ref|ZP_05442443.1| transcription elongation factor NusA [Fusobacterium sp. D11]
gi|260495123|ref|ZP_05815252.1| transcription termination factor NusA [Fusobacterium sp. 3_1_33]
gi|289766527|ref|ZP_06525905.1| transcription elongation factor NusA [Fusobacterium sp. D11]
gi|229433033|gb|EEO43245.1| transcription elongation factor NusA [Fusobacterium sp. 7_1]
gi|260197566|gb|EEW95084.1| transcription termination factor NusA [Fusobacterium sp. 3_1_33]
gi|289718082|gb|EFD82094.1| transcription elongation factor NusA [Fusobacterium sp. D11]
Length = 359
Score = 306 bits (785), Expect = 4e-81, Method: Composition-based stats.
Identities = 126/344 (36%), Positives = 213/344 (61%), Gaps = 4/344 (1%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
M + + L+ D + EK I ++ VL + ++ A + YG ++ V ++ E GDI
Sbjct: 1 MKAKDSKNFLEALDELEKEKGISKESVLEAIELALLAAYKKNYGEDENVEVTVDRENGDI 60
Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+F VV +++ + +ISL+ A+ + IG ++ + +F R AVQ+ KQ++
Sbjct: 61 KVFASKTVVAADDLLDPNEEISLEDAKKIKKRVKIGDILKFEVDCENFRRNAVQNGKQIV 120
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLR 177
IQKVREAER+ + +FK++ I++G ++R++ N+ +++ + ++ E + R
Sbjct: 121 IQKVREAEREHIFNKFKEREDSIVTGIIRRIDNRKNIFIEIDGVELILPPAEQSVSDIYR 180
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
G+R+K Y+ V + + P++L+SR + + KLF +E+PEI +GI+++K+V+R+ GSRA
Sbjct: 181 VGERIKVYVLSVEKTSKFPKILISRRNEGLLRKLFEIEIPEITSGIIEIKSVAREAGSRA 240
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV+S+ +ID +GAC+G +G+R++ +V EL E+IDIV W P FV L PA+V
Sbjct: 241 KVAVYSAVPNIDTIGACIGQKGARIKNIVDELNGERIDIVEWKPVVEEFVSAVLSPAVVE 300
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
V + ED G V+V QLSLAIG+ GQN RLA++LTG +DI
Sbjct: 301 SVTILED-GTARVLVEPSQLSLAIGKNGQNARLAARLTGMRVDI 343
>gi|15604816|ref|NP_219600.1| transcription elongation factor NusA [Chlamydia trachomatis
D/UW-3/CX]
gi|76788811|ref|YP_327897.1| transcription elongation factor NusA [Chlamydia trachomatis
A/HAR-13]
gi|237802529|ref|YP_002887723.1| transcription elongation factor NusA [Chlamydia trachomatis
B/Jali20/OT]
gi|255310899|ref|ZP_05353469.1| transcription elongation factor NusA [Chlamydia trachomatis 6276]
gi|255317199|ref|ZP_05358445.1| transcription elongation factor NusA [Chlamydia trachomatis 6276s]
gi|255506672|ref|ZP_05382311.1| transcription elongation factor NusA [Chlamydia trachomatis
D(s)2923]
gi|3328493|gb|AAC67688.1| Transcription antitermination factor [Chlamydia trachomatis
D/UW-3/CX]
gi|76167341|gb|AAX50349.1| N utilization substance protein A [Chlamydia trachomatis A/HAR-13]
gi|231273763|emb|CAX10544.1| N utilization substance protein A [Chlamydia trachomatis
B/Jali20/OT]
gi|289525141|emb|CBJ14613.1| N utilization substance protein A [Chlamydia trachomatis Sweden2]
gi|296434685|gb|ADH16863.1| transcription elongation factor NusA [Chlamydia trachomatis E/150]
gi|296435614|gb|ADH17788.1| transcription elongation factor NusA [Chlamydia trachomatis G/9768]
gi|296436537|gb|ADH18707.1| transcription elongation factor NusA [Chlamydia trachomatis
G/11222]
gi|296437474|gb|ADH19635.1| transcription elongation factor NusA [Chlamydia trachomatis
G/11074]
gi|296438402|gb|ADH20555.1| transcription elongation factor NusA [Chlamydia trachomatis
E/11023]
gi|297139973|gb|ADH96731.1| transcription elongation factor NusA [Chlamydia trachomatis G/9301]
Length = 434
Score = 306 bits (785), Expect = 5e-81, Method: Composition-based stats.
Identities = 146/428 (34%), Positives = 235/428 (54%), Gaps = 9/428 (2%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+L+ I D + EK I R ++ + +++ AA+ +++ V INP TGDI +F
Sbjct: 2 NKDLVAIFDYMEREKGIQRSTIVGAIESALKIAAKKTLRDDANVSVSINPRTGDIEVFCE 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
++VE+ +N + +I L AR+ DP IG + P FGR+A +A+Q+I QK+R A
Sbjct: 62 KQIVEKCQNPSKEIPLDKAREYDPDCQIGQYMDVPFISDQFGRIAAHAARQIIGQKLRHA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
ERD Y E++ + EIISG VK G N++VDLG +G++ E + GD++ +
Sbjct: 122 ERDVIYEEYRHRKNEIISGVVKSFARGANLVVDLGKVEGLLPARFYPKTEKHKVGDKIYA 181
Query: 185 YIYD-VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+Y+ E G +V+LSR HP+F+ +LF EVPE+ G V++ ++R+ G R K+AV S
Sbjct: 182 LLYEVQESENGGAEVILSRNHPEFVKQLFVQEVPELEEGSVEIVKIAREAGYRTKMAVRS 241
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
S+ D VGA VGMRGSR++ ++ EL DEKID+V +SP S + N L P + K+ + E
Sbjct: 242 SNPQTDAVGAFVGMRGSRIKNIIRELNDEKIDVVNYSPVSTELLQNLLYPVEIQKIAILE 301
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
D I +IV + IG+RG N RL SQ+ G+ +++ E + + + +F
Sbjct: 302 DDKVIAIIVQDSDYATVIGKRGINARLISQILGYELEVQRVSEYNKLLEIQRLQLAEFED 361
Query: 364 QAI-------NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416
+ ++ +I L G+ + ++ SE+AS+ G E A +I + +Y
Sbjct: 362 PRLDQPLEVEGINTLIVQNLEHAGYDTIRKILLASASELASVPGISLELAYKILEQVSKY 421
Query: 417 LEGIDITL 424
EG
Sbjct: 422 GEGKVDEK 429
>gi|288924202|ref|ZP_06418238.1| NusA antitermination factor [Frankia sp. EUN1f]
gi|288344449|gb|EFC78942.1| NusA antitermination factor [Frankia sp. EUN1f]
Length = 362
Score = 306 bits (785), Expect = 5e-81, Method: Composition-based stats.
Identities = 139/349 (39%), Positives = 200/349 (57%), Gaps = 28/349 (8%)
Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70
+ EK I D ++ + ++ A + G+ D RV I+ +G++++F
Sbjct: 6 AALRGIEREKEIAFDTLVEAIETALLTAYKHTTGSADDARVVIDRTSGEVAVF------- 58
Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130
AR+ P G P DFGR+A +AKQVI+Q++REA+++
Sbjct: 59 -------------ARESAPD---GTSREWDDTPADFGRIATMTAKQVIMQRLREAQQEVT 102
Query: 131 YLEFKDKVGEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
Y ++ D+ E++SG V+ E V+VDLG +GV+ E + E L GDR+K Y+
Sbjct: 103 YGQYADREHEVVSGVVQHHEQRAGSRVVLVDLGTVEGVLPPAEQVPGERLEHGDRIKCYV 162
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
V R GP V LSRTHP+ + LF +EVPE+ +G V++ A++R+ G R K+AV S
Sbjct: 163 VHVSRGAHGPTVTLSRTHPELVKGLFRLEVPEVADGTVELAAIAREAGHRTKIAVRSKAP 222
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDV 305
++P GAC+G GSRV+AV+ EL EKIDIV WS D A FV +AL PA V+KV + D
Sbjct: 223 GVNPKGACIGPMGSRVRAVMAELHGEKIDIVDWSADPAAFVGSALSPARVSKVEVTDLAN 282
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354
V+VP QLSLAIGR GQN RLA++LTGW IDI ++ E + +R
Sbjct: 283 RSARVVVPDYQLSLAIGREGQNARLAARLTGWRIDIHSDTEGNPDRADQ 331
>gi|86742245|ref|YP_482645.1| NusA antitermination factor [Frankia sp. CcI3]
gi|86569107|gb|ABD12916.1| NusA antitermination factor [Frankia sp. CcI3]
Length = 365
Score = 306 bits (784), Expect = 5e-81, Method: Composition-based stats.
Identities = 141/340 (41%), Positives = 198/340 (58%), Gaps = 28/340 (8%)
Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70
+ EK I D ++ M ++ A G+ D RV I+ TGD+S+
Sbjct: 6 AALRGIEREKDIAFDTLVQAMETALLTAYHHTAGSAQDARVVIDRTTGDVSVL------- 58
Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130
AR++ P G P DFGR+A +AKQVI+Q++REA+++
Sbjct: 59 -------------AREQGPD---GTSREYDDTPADFGRIATMTAKQVIMQRLREAQQEVT 102
Query: 131 YLEFKDKVGEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
Y ++ D+ EI+SG V+ E V+V+LG +GV+ E + E L GDR+K Y+
Sbjct: 103 YGQYADREHEIVSGVVQHHEQRAGSRVVLVNLGTVEGVLPPAEQVPGERLEHGDRIKCYV 162
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
V R GP V LSRTHP+ + LF +EVPE+ +G V++ A++R+ G R+K+AV S +
Sbjct: 163 VHVARGPHGPTVTLSRTHPELVKGLFRLEVPEVADGTVELAAIAREAGHRSKIAVRSRVA 222
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDV 305
++P GAC+G GSRV+AV+ ELR EKIDIV WS D ATFV +AL PA V +V + D
Sbjct: 223 GVNPKGACIGPMGSRVRAVMAELRGEKIDIVDWSADPATFVGSALSPARVARVEVTDPAS 282
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345
V+VP QLSLAIGR GQN RLA++LTGW IDI ++
Sbjct: 283 RSARVVVPDYQLSLAIGREGQNARLAARLTGWRIDIHSDT 322
>gi|227514704|ref|ZP_03944753.1| transcription termination factor NusA [Lactobacillus fermentum ATCC
14931]
gi|227086908|gb|EEI22220.1| transcription termination factor NusA [Lactobacillus fermentum ATCC
14931]
gi|299783112|gb|ADJ41110.1| Transcription termination factor NusA [Lactobacillus fermentum CECT
5716]
Length = 408
Score = 306 bits (784), Expect = 6e-81, Method: Composition-based stats.
Identities = 142/391 (36%), Positives = 219/391 (56%), Gaps = 25/391 (6%)
Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLF 63
+R+ELL D + EK I ++V++ + D++ A + Y +++ VEI+ TG+ ++
Sbjct: 6 DRVELLDAMDILEKEKGIKKEVIIEALKDALANAYQKNYEDNAANVEVEISDRTGEFKVY 65
Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
VVEEV N +ISL A + ++G + + + P +FGR+A Q+AK V++QK+R
Sbjct: 66 AAKTVVEEVTNDVEEISLADALRVNRGYELGDIFKEEVTPRNFGRLAAQTAKSVVLQKLR 125
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182
+ ER+ + ++ +++ G V R + + V+LG + + + + + E+ R DR+
Sbjct: 126 DEERNIIFDKYNKLKDDLVEGEVSREDERYIYVNLGDGVEAAMNKHDQMPNEHYRVHDRI 185
Query: 183 KSYIYDVRREQ--RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
+ Y+ V + RGP V +SRT P + +LF EVPEI GIV+VK + R+ G RAK+A
Sbjct: 186 QVYVTRVNDKSGARGPLVFVSRTSPDLLKRLFEKEVPEIQQGIVEVKGIVREAGDRAKVA 245
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
VFS D ++DPVG CVG RG+RVQA+V +L E IDIV + F+ NAL PA V V+
Sbjct: 246 VFSRDENVDPVGTCVGPRGTRVQAIVNQLGGENIDIVKYEEAPEEFIRNALNPAEVEGVL 305
Query: 301 LDEDV---------------------GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
DE+ VIVP +QLSLAIG+RGQNVRLA+QLTG+ I
Sbjct: 306 FDENNGEVDEPASVDENGRKHEERIHRGCTVIVPDDQLSLAIGKRGQNVRLAAQLTGYKI 365
Query: 340 DIITEEEDSINRQKDFNERTQFFMQAINVDE 370
DI + + + + + Q E
Sbjct: 366 DIKSSSQAAALEEAQPEPAAEVVEQPTQAPE 396
>gi|237804446|ref|YP_002888600.1| transcription elongation factor NusA [Chlamydia trachomatis
B/TZ1A828/OT]
gi|231272746|emb|CAX09650.1| N utilization substance protein A [Chlamydia trachomatis
B/TZ1A828/OT]
Length = 434
Score = 306 bits (784), Expect = 6e-81, Method: Composition-based stats.
Identities = 146/427 (34%), Positives = 235/427 (55%), Gaps = 9/427 (2%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+L+ I D + EK I R ++ + +++ AA+ +++ V INP TGDI +F
Sbjct: 2 NKDLVAIFDYMEREKGIQRSTIVGAIESALKIAAKKTLRDDANVSVSINPRTGDIEVFCE 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
++VE+ +N + +I L AR+ DP IG + P FGR+A +A+Q+I QK+R A
Sbjct: 62 KQIVEKCQNPSKEIPLDEAREYDPDCQIGQYMDVPFISDQFGRIAAHAARQIIGQKLRHA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
ERD Y E++ + EIISG VK G N++VDLG +G++ E + GD++ +
Sbjct: 122 ERDVIYEEYRHRKNEIISGVVKSFARGANLVVDLGKVEGLLPARFYPKTEKHKVGDKIYA 181
Query: 185 YIYD-VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+Y+ E G +V+LSR HP+F+ +LF EVPE+ G V++ ++R+ G R K+AV S
Sbjct: 182 LLYEVQESENGGAEVILSRNHPEFVKQLFVQEVPELEEGSVEIVKIAREAGYRTKMAVRS 241
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
S+ D VGA VGMRGSR++ ++ EL DEKID+V +SP S + N L P + K+ + E
Sbjct: 242 SNPQTDAVGAFVGMRGSRIKNIIRELNDEKIDVVNYSPVSTELLQNLLYPVEIQKIAILE 301
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
D I +IV + IG+RG N RL SQ+ G+ +++ E + + + +F
Sbjct: 302 DDKVIAIIVQDSDYATVIGKRGINARLISQILGYELEVQRVSEYNKLLEIQRLQLAEFED 361
Query: 364 QAI-------NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416
+ ++ +I L G+ + ++ SE+AS+ G E A +I + +Y
Sbjct: 362 PRLDQPLEVEGINTLIVQNLEHAGYDTIRKILLASASELASVPGISLELAYKILEQVSKY 421
Query: 417 LEGIDIT 423
EG
Sbjct: 422 GEGKVDE 428
>gi|295102730|emb|CBL00275.1| transcription termination factor NusA [Faecalibacterium prausnitzii
L2-6]
Length = 373
Score = 306 bits (783), Expect = 7e-81, Method: Composition-based stats.
Identities = 144/354 (40%), Positives = 211/354 (59%), Gaps = 8/354 (2%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGD 59
M +AN E + + +E+ I + ++ + +I A + Y + VEI+P TG
Sbjct: 1 MAAANN-EFFEALSMLEHERGITAEYLIEKIKAAIVIAVKKNYEVEDDHVMVEIDPNTGK 59
Query: 60 ISLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117
++ + +VV E+ + +I + A+ S +G V PL DFGR+A Q+AK V
Sbjct: 60 FNVALIQDVVADEDWYDEHSEIGITEAQHIRKSYQVGDRVVTPLKTKDFGRIAAQTAKHV 119
Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV--DLGNS-DGVIRRDETISRE 174
I Q +REAER +Q E + + +I+ TV RV+ IV DLG + ++ R+E + E
Sbjct: 120 IRQGIREAERSQQLSEIQSRAHDIVQATVTRVDPEKGIVALDLGKGGEAILPRNEQVPGE 179
Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234
G ++ YI DV +RGP+V++SRTHP + +LF +EVPEIY+G V+VKA+SR+ G
Sbjct: 180 VYTEGQMLQVYIVDVVASERGPRVMISRTHPGLVKRLFELEVPEIYDGTVEVKAISREAG 239
Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294
+R K+AV+S D++++PV AC+G G RV AVV +L EKIDIV WS D + F+ AL PA
Sbjct: 240 ARTKMAVWSKDANVNPVSACIGPHGDRVAAVVEKLGGEKIDIVKWSEDISEFISAALSPA 299
Query: 295 IVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347
V KV L + V VP +QLSLAIG +GQN RL ++LTG+ IDI E
Sbjct: 300 KVVKVELLPGETRSCRVTVPDQQLSLAIGNKGQNARLCARLTGYNIDIRPESGY 353
>gi|159036964|ref|YP_001536217.1| transcription elongation factor NusA [Salinispora arenicola
CNS-205]
gi|157915799|gb|ABV97226.1| NusA antitermination factor [Salinispora arenicola CNS-205]
Length = 347
Score = 306 bits (783), Expect = 7e-81, Method: Composition-based stats.
Identities = 138/346 (39%), Positives = 199/346 (57%), Gaps = 27/346 (7%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
L A+ E+ I D +L+ + ++ A R G RVEI+ +TG
Sbjct: 5 LAALRALEREREIPFDTILAAIETALLTAYRHTEGAQPHARVEIDRKTG----------- 53
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
++L A++ D G V P DFGR+A +AKQVI+Q++REA +
Sbjct: 54 ---------VALVYAQEMDADG--GVVREWDDTPHDFGRIAAMTAKQVILQRLREATDEV 102
Query: 130 QYLEFKDKVGEIISGTVK----RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
+ E+ + G++++G V+ R E G V VDLG +GV+ + E + E G+RV+
Sbjct: 103 HFGEYVGRDGDLVTGVVQAHEARAEKGIVSVDLGKLEGVLPQSEQVPGEQYAHGERVRCV 162
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ V + RGPQV LSR+HP + KLF +EVPEI +G V++ A++R+ G R K+AV S+
Sbjct: 163 VVHVAKGVRGPQVTLSRSHPALVKKLFALEVPEIADGTVEITAIAREAGHRTKIAVRSTA 222
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDED 304
+ ++ GAC+G G RV+AV++EL EKIDI+ WS D ATFV NAL PA +V +D
Sbjct: 223 AGVNAKGACIGPMGQRVRAVMSELHGEKIDIIDWSEDPATFVGNALSPAKALRVDVVDLA 282
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350
V VP QLSLAIGR GQN RLA++LTGW IDI ++ E +
Sbjct: 283 SRTARVTVPDFQLSLAIGREGQNARLAARLTGWRIDIRSDVEPARP 328
>gi|187778986|ref|ZP_02995459.1| hypothetical protein CLOSPO_02581 [Clostridium sporogenes ATCC
15579]
gi|187772611|gb|EDU36413.1| hypothetical protein CLOSPO_02581 [Clostridium sporogenes ATCC
15579]
Length = 454
Score = 306 bits (783), Expect = 8e-81, Method: Composition-based stats.
Identities = 159/436 (36%), Positives = 266/436 (61%), Gaps = 6/436 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDIS 61
E ++ + EK I D++ + + D++ A + Y G+ ++++V +N E+G+I
Sbjct: 2 NQEFVEALKEIVKEKGISADLLFTTIEDALVTAYKKNYAKQGGSTNNVKVIMNRESGEIK 61
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
++ +VVE VE +ISL+ A++ DP+ ++ +++ + P FGR+A Q+AKQV+IQ+
Sbjct: 62 VYAQKKVVELVEEEIEEISLEDAKEIDPNYELEDIINIEVTPKKFGRIAAQAAKQVVIQR 121
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
++E ER Y E+ +K +I++GTV R + GN+++++G S+ V+ +E I E R ++
Sbjct: 122 IKEEERRIVYNEYIEKEEDILTGTVLRKDKGNILINVGKSEAVLGPNEQIPGEQFRFNEK 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K Y+ +V+ +GPQVL+SRTHP + +LF +EVPEIYNG+V++K+++R+ GSR K+AV
Sbjct: 182 IKLYVVEVKNTTKGPQVLISRTHPGLVKRLFELEVPEIYNGVVEIKSIAREAGSRTKIAV 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
+S+D ++DP+GACVG +G RVQ +V EL++EKIDI+ WS + NAL PA V V +
Sbjct: 242 YSNDEAVDPMGACVGPKGVRVQNIVNELKNEKIDIIKWSKFPDELISNALSPAKVIDVTI 301
Query: 302 -DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
DE+ V+V QLSLAIG+ GQNVRLA++LTGW IDI ++ + + +E
Sbjct: 302 VDEENKAARVVVDDSQLSLAIGKEGQNVRLAAKLTGWKIDIKSKSQAEKEEILNLSETKD 361
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
+ D+ + + E + E I E S+ ++E E+ +A E +
Sbjct: 362 EVILENKEDDKEEKIDLYEEMDSMVEDTKENIKEEISVSENNQEVDSEL-EKAMEEVFNT 420
Query: 421 DITLQKKIRELGVSEE 436
+ L+K I +E
Sbjct: 421 EDKLEKDINLFEDDDE 436
>gi|294101966|ref|YP_003553824.1| NusA antitermination factor [Aminobacterium colombiense DSM 12261]
gi|293616946|gb|ADE57100.1| NusA antitermination factor [Aminobacterium colombiense DSM 12261]
Length = 362
Score = 306 bits (783), Expect = 8e-81, Method: Composition-based stats.
Identities = 131/354 (37%), Positives = 223/354 (62%), Gaps = 3/354 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
+ ++ + E+ + +V+ S + ++ A + G ++ V I+ E+G++S++ +
Sbjct: 6 DFVRALKQLTAERGLTSEVIASSLEAALISAYKKYQGGDRNVEVHIDLESGNVSIYEVRL 65
Query: 68 VVEEVENYTCQISLKVARDRD-PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
VV+EV+N QISL + +++ V P +FGR+A Q+A+QVIIQK+++AE
Sbjct: 66 VVDEVDNPDAQISLIDVQKLGFTDVEVNEYVRIEKNPENFGRIAAQTARQVIIQKLKDAE 125
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSY 185
R + EF +VG++++G + + E V+V L ++ ++ ++E + E PG+R+K Y
Sbjct: 126 RQIIFEEFSGRVGDLVNGIIFKSENDQVLVRLNDRTEAILPKEERVINEKYTPGERLKFY 185
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ DVR+ RGP++++SRTHP + KL +EVPEI GI+++K++ R+ G+RAK+AV + D
Sbjct: 186 LLDVRQTTRGPRIVVSRTHPGLLRKLLELEVPEIQEGIIEIKSIVREAGTRAKVAVQTLD 245
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDED 304
++DPVGACVG G+R++++ EL EKID+++WS D FV N+L PA + K+ + E
Sbjct: 246 INVDPVGACVGNNGARIKSISQELSGEKIDVIIWSSDPLIFVRNSLSPAKIVKIEPILEQ 305
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
+ V +QLSLAIG+ GQNVRLA++LT W IDI E + + +D +
Sbjct: 306 DKAVTVYARPDQLSLAIGKAGQNVRLAARLTSWKIDIKALEPERMPTLQDIFQD 359
>gi|237742964|ref|ZP_04573445.1| transcription elongation factor NusA [Fusobacterium sp. 4_1_13]
gi|256846936|ref|ZP_05552390.1| transcription termination factor NusA [Fusobacterium sp. 3_1_36A2]
gi|229430612|gb|EEO40824.1| transcription elongation factor NusA [Fusobacterium sp. 4_1_13]
gi|256717734|gb|EEU31293.1| transcription termination factor NusA [Fusobacterium sp. 3_1_36A2]
Length = 357
Score = 305 bits (782), Expect = 9e-81, Method: Composition-based stats.
Identities = 129/357 (36%), Positives = 219/357 (61%), Gaps = 4/357 (1%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
M + + L+ D + EK I ++ VL + ++ A + YG ++ V ++ GDI
Sbjct: 1 MKAKDSKNFLEALDELEREKGISKESVLEAIELALLAAYKKNYGEDENVEVVVDRANGDI 60
Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+F VV+ + + +ISL+ A+ + IG V+ + +F R AVQ+ KQ++
Sbjct: 61 KVFASKTVVDADNLLDPNEEISLEDAKQIKKRVKIGDVLKFEVDCENFRRNAVQNGKQIV 120
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLR 177
IQKVREAER+ + +FK++ I++G ++R++ N+ +++ + ++ E + R
Sbjct: 121 IQKVREAEREHIFNKFKEREDNIVTGIIRRIDNRKNIFIEIDGIELILPPAEQSLSDVYR 180
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
G+R+K YI V + + P++L+SR + + KLF +E+PEI +GI+++K+V+R+ GSRA
Sbjct: 181 VGERIKVYILSVEKTNKFPKILISRKNEGLLKKLFEIEIPEITSGIIEIKSVAREAGSRA 240
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV+S+ +ID VGAC+G RG+R++ +V EL E+IDIV W P FV L PA+V+
Sbjct: 241 KVAVYSAVPNIDTVGACIGQRGARIKNIVDELNGERIDIVEWKPVVEEFVSAVLSPAVVS 300
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354
V + ED G V+V QLSLAIG+ GQN RLA++LTG +DI + +++ +++
Sbjct: 301 NVTILED-GTARVLVEPSQLSLAIGKNGQNARLAARLTGMRVDIKVIDNETLKEEEN 356
>gi|312865489|ref|ZP_07725716.1| transcription termination factor NusA [Streptococcus downei F0415]
gi|311099007|gb|EFQ57224.1| transcription termination factor NusA [Streptococcus downei F0415]
Length = 429
Score = 305 bits (782), Expect = 9e-81, Method: Composition-based stats.
Identities = 135/408 (33%), Positives = 222/408 (54%), Gaps = 15/408 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + EK ID++ ++ + +S++ A + YG VE N +TGD ++ + E
Sbjct: 4 EMLEAFRVLEEEKHIDKNDIIDAVTESLKSAYKRRYGQSDSCEVEFNEKTGDFQVYSVRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + +ISL A + ++G + +FGRVA QSAKQ I++K+R R
Sbjct: 64 VVEEVFDSRLEISLADALKISSAYELGDKIRFEESVKEFGRVAAQSAKQTIMEKMRRQMR 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR++ Y+Y
Sbjct: 124 EITYNEYKEHEGEIMTGTVERFDQRFIYVNLGSIEAQLSHQDQIPGETFKSHDRIEVYVY 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RG V +SR+HPQF+ ++ E+PE+++G V++ +VSR+ G R K+AV S + +
Sbjct: 184 KVENNPRGVNVFVSRSHPQFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG G+ ++ VV++ E ID++ W D A F+ NA+ P
Sbjct: 244 VDAIGTIVGRGGANIKKVVSKFHPVRLDPKSGLAVPVEENIDVIQWEEDPAEFIYNAIAP 303
Query: 294 AIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V V+ D++ V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 304 AEVDYVIFDDENSKHATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSATEYETMEA 363
Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEG 400
+ + + EI+ E + +++ +IE
Sbjct: 364 QAEEAYEADDLAEESSSEILESAEGLEEVQEADQIDAEAQDLDEAIES 411
>gi|315652148|ref|ZP_07905146.1| transcription termination factor NusA [Eubacterium saburreum DSM
3986]
gi|315485640|gb|EFU76024.1| transcription termination factor NusA [Eubacterium saburreum DSM
3986]
Length = 386
Score = 305 bits (782), Expect = 1e-80, Method: Composition-based stats.
Identities = 147/358 (41%), Positives = 227/358 (63%), Gaps = 6/358 (1%)
Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV------E 73
K+I + +L + +S+ A ++ +GT +++V +NP T D S+ + EVVE + E
Sbjct: 16 KNISKAAILEAIENSLISACKNSFGTADNVKVSVNPTTCDYSIIQAKEVVESLGNKPSLE 75
Query: 74 NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133
+ +ISL AR ++P++ +G V P+ +FGR+A AK VI+QK+RE ER + +
Sbjct: 76 DRATKISLAEARMQNPNLGVGDTVLVPVISKEFGRIAAGVAKNVILQKIREEERKVIFND 135
Query: 134 FKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193
+ K +I+SG V R N+ ++LG D V+ E + E+L+ GDR+K ++ +V+
Sbjct: 136 YYMKERDIVSGVVTRFMGKNIAINLGKIDAVLAESEQVKGEDLKLGDRLKVFVLEVKDNP 195
Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGA 253
+GP++ +SRTHP+F+ +LF +VPEI +G+V++K+++R+ GSR K+AV S + IDPVGA
Sbjct: 196 KGPRISVSRTHPEFVKRLFEAQVPEIRDGVVEIKSIAREAGSRTKIAVCSHEPDIDPVGA 255
Query: 254 CVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVP 313
CVG+ G RV AVV ELRDEK+DIV W + A + NAL PA V VV DE+ +VIVP
Sbjct: 256 CVGVDGVRVNAVVEELRDEKVDIVNWDDNPAYLIENALSPAKVIAVVADEETKEADVIVP 315
Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEI 371
QLSLAIG+ GQN RLA++LTG+ IDI +E + D + ++ + +E
Sbjct: 316 DYQLSLAIGKEGQNARLAARLTGYKIDIKSESQARELGVFDSLDGSENMSANTDNNED 373
>gi|302338537|ref|YP_003803743.1| transcription termination factor NusA [Spirochaeta smaragdinae DSM
11293]
gi|301635722|gb|ADK81149.1| transcription termination factor NusA [Spirochaeta smaragdinae DSM
11293]
Length = 496
Score = 305 bits (782), Expect = 1e-80, Method: Composition-based stats.
Identities = 152/450 (33%), Positives = 248/450 (55%), Gaps = 19/450 (4%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
L + ++ ++ I ++V + D + A + +GT + V + + ++++F E+
Sbjct: 5 LAEAIRSLVQDRGISEELVRKTIEDFLLAAYKRKFGTTENAVVRFSEDGNEVAIFAAKEI 64
Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
VE VE+ ++ LK A + +IG + + P +F RVAVQSAKQ Q +RE ++D
Sbjct: 65 VENVEDPVTEMPLKEALTYNEECEIGDELLIEINPKEFDRVAVQSAKQKAKQTLREIQKD 124
Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
Y EFK+K GE++ G +R GN+ VDLG +G++ R RE RP DR+K+ IY+
Sbjct: 125 TLYSEFKEKEGEMVIGYYQRERNGNIFVDLGKIEGILPRRYQSPREVYRPNDRIKALIYE 184
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V + G Q++LSRTH F+ ++F +EVPE+Y+ V++ + R+PG R K+AV+S+ +
Sbjct: 185 VSKSPSGLQIVLSRTHTDFVKRIFELEVPEVYDKTVEIFKIVREPGYRTKIAVYSNRDDV 244
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307
DPVGACVGM+G R+QAVV EL EKIDI+ + D+ +F+ NAL PA V VV+ DE +
Sbjct: 245 DPVGACVGMKGVRIQAVVRELEGEKIDILKYDIDARSFIKNALSPAEVQNVVILDEAKRQ 304
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT-------- 359
+V + QLSLAIG++G NVRLA++L W ID+ T E+ ++
Sbjct: 305 ALAVVEENQLSLAIGKQGLNVRLANRLVDWNIDVKTIEQFEEMDLSAETKKELNALFNDV 364
Query: 360 ----------QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409
+ + E ++ +L+ G +E L + +++ +EG + I
Sbjct: 365 EEDDENVEEISRISELPGISERLSEILMQNGVELIETLVGLSGEDLSRLEGVTVQDVETI 424
Query: 410 QGRAREYLEGIDITLQKKIRELGVSEELCS 439
Q E ++ I+ ++ I + E L
Sbjct: 425 QNIISENVDIIEEQEEEAIAQTESHEHLAE 454
>gi|184155206|ref|YP_001843546.1| transcription termination-antitermination factor NusA
[Lactobacillus fermentum IFO 3956]
gi|260662294|ref|ZP_05863190.1| transcription termination factor NusA [Lactobacillus fermentum
28-3-CHN]
gi|183226550|dbj|BAG27066.1| transcription termination-antitermination factor NusA
[Lactobacillus fermentum IFO 3956]
gi|260553677|gb|EEX26569.1| transcription termination factor NusA [Lactobacillus fermentum
28-3-CHN]
Length = 408
Score = 305 bits (782), Expect = 1e-80, Method: Composition-based stats.
Identities = 142/391 (36%), Positives = 219/391 (56%), Gaps = 25/391 (6%)
Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLF 63
+R+ELL D + EK I ++V++ + D++ A + Y +++ VEI+ TG+ ++
Sbjct: 6 DRVELLDAMDILEKEKGIKKEVIIEALKDALANAYQKNYEDNAANVEVEISDRTGEFKVY 65
Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
VVEEV N +ISL A + ++G + + + P +FGR+A Q+AK V++QK+R
Sbjct: 66 AAKTVVEEVTNDVEEISLADALRVNRGYELGDIFKEEVTPRNFGRLAAQTAKSVVLQKLR 125
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182
+ ER+ + ++ +++ G V R + + V+LG + + + + + E+ R DR+
Sbjct: 126 DEERNIIFDKYNKLKDDLVEGEVSREDERYIYVNLGDGVEAAMNKHDQMPNEHYRVHDRI 185
Query: 183 KSYIYDVRREQ--RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
+ Y+ V + RGP V +SRT P + +LF EVPEI GIV+VK + R+ G RAK+A
Sbjct: 186 QVYVTRVNDKSGARGPLVFVSRTSPDLLKRLFEKEVPEIQQGIVEVKGIVREAGDRAKVA 245
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
VFS D ++DPVG CVG RG+RVQA+V +L E IDIV + F+ NAL PA V V+
Sbjct: 246 VFSRDENVDPVGTCVGPRGTRVQAIVNQLGGENIDIVKYEEAPEEFIRNALNPAEVEGVL 305
Query: 301 LDEDV---------------------GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
DE+ VIVP +QLSLAIG+RGQNVRLA+QLTG+ I
Sbjct: 306 FDENNGEVDEPASVDENGREHEERIHRGCTVIVPDDQLSLAIGKRGQNVRLAAQLTGYKI 365
Query: 340 DIITEEEDSINRQKDFNERTQFFMQAINVDE 370
DI + + + + + Q E
Sbjct: 366 DIKSSSQAAALEEAQPEPAAEVVEQPTQAPE 396
>gi|256847048|ref|ZP_05552494.1| transcription termination factor NusA [Lactobacillus coleohominis
101-4-CHN]
gi|256715712|gb|EEU30687.1| transcription termination factor NusA [Lactobacillus coleohominis
101-4-CHN]
Length = 385
Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats.
Identities = 142/368 (38%), Positives = 214/368 (58%), Gaps = 22/368 (5%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFR 64
+ ELL D + EK I +DV+++ + D++ A + Y +++ V+I+ +TGD +F
Sbjct: 7 KAELLGAMDVLEKEKGIKKDVIVNALTDALANAYQKNYDDNNANVEVKIDEQTGDFKVFA 66
Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
+VV+EV N QISL+ A +IG + + P DFGR+A Q+AK V++Q++RE
Sbjct: 67 TKKVVDEVTNPIEQISLRDAMHVSHGYEIGDDFKEEVTPNDFGRIAAQTAKSVVLQQLRE 126
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVK 183
ER Y ++ +++ G V R + + ++L G + + + + + E+ R D V+
Sbjct: 127 EERRIVYEKYNKLKDDLVDGEVAREDSRFIYINLTGGVEAAMNKHDQMPNEHYRTHDHVQ 186
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
Y+ V ++ +GPQV +SRT P + +LF EVPEI GIV++K + R+ G RAK+AVFS
Sbjct: 187 VYVTRVLKDTKGPQVFVSRTAPDLLKRLFEKEVPEISQGIVEIKGIVREAGDRAKVAVFS 246
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
DS++D VG CVG RG+RVQ +V +L E IDIV + + F+ NAL PA V V+ DE
Sbjct: 247 RDSNVDAVGTCVGPRGARVQTIVNQLGGENIDIVKFEEEPEDFIRNALNPAEVKAVIFDE 306
Query: 304 DV--------------------GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343
+ VIVP +QLSLAIG+RGQNVRLA+QLTG+ IDI
Sbjct: 307 NNGEIEENQPKVDGEESEPRVHRGCTVIVPDDQLSLAIGKRGQNVRLAAQLTGYKIDIKP 366
Query: 344 EEEDSINR 351
E +
Sbjct: 367 LSEVDTDD 374
>gi|331002483|ref|ZP_08326001.1| transcription termination factor NusA [Lachnospiraceae oral taxon
107 str. F0167]
gi|330410299|gb|EGG89733.1| transcription termination factor NusA [Lachnospiraceae oral taxon
107 str. F0167]
Length = 395
Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats.
Identities = 150/361 (41%), Positives = 227/361 (62%), Gaps = 6/361 (1%)
Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE------VE 73
K+I + +L + +S+ A ++ +GT +++V +NP+T D S+ + EVVE +E
Sbjct: 16 KNISKAAILEAIENSLISACKNNFGTADNVKVSVNPDTCDYSIIQAKEVVETLGNKPTIE 75
Query: 74 NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133
+ +ISL AR ++P++ +G V P+ +FGR+A AK VI+QK+RE ER + +
Sbjct: 76 DKATKISLAEARMKNPNLSVGDTVLVPVISKEFGRIAAGVAKNVILQKIREEERKVIFND 135
Query: 134 FKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193
+ K +I+SG V R N+ ++LG D V+ E + E L+ GDR+K ++ +V+
Sbjct: 136 YYMKERDIVSGAVTRFMGKNIAINLGRIDAVLAESEQVKSEELKLGDRLKVFVLEVKDNP 195
Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGA 253
+GP++ +SRTHP+F+ +LF EVPEI +G+V++K++SR+ GSR K+AVFS ++ IDPVGA
Sbjct: 196 KGPRISVSRTHPEFVKRLFESEVPEIRDGVVEIKSISREAGSRTKIAVFSHEADIDPVGA 255
Query: 254 CVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVP 313
CVG+ G RV AVV ELR EK+DIV W + + NAL PA V VV DE+ +VIVP
Sbjct: 256 CVGVDGVRVNAVVEELRGEKVDIVNWDDNPGYLIENALSPAKVIAVVADEETKEADVIVP 315
Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIA 373
QLSLAIG+ GQN RLA++LTG+ IDI +E + D + + + VDE
Sbjct: 316 DYQLSLAIGKEGQNARLAARLTGYKIDIKSESQARELGVFDSLDGSDDISDDMPVDEEYT 375
Query: 374 H 374
Sbjct: 376 E 376
>gi|254302278|ref|ZP_04969636.1| N utilization substance protein A [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148322470|gb|EDK87720.1| N utilization substance protein A [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 357
Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats.
Identities = 130/357 (36%), Positives = 219/357 (61%), Gaps = 4/357 (1%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
M + + L+ D + EK I ++ VL + ++ A + YG ++ V ++ E GDI
Sbjct: 1 MKAKDSKNFLEALDELEREKGISKESVLEAIELALLAAYKKNYGEDENVEVVVDRENGDI 60
Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+F +V +E+ + +ISL+ A+ I +G + + DF R AVQ+ KQ++
Sbjct: 61 KVFASKIIVNTDELLDPNKEISLEDAKQIKKRIKVGDTLKFEVNCEDFRRNAVQNGKQIV 120
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLR 177
IQKVREAER+ + +FK++ I++G ++R++ N+ +++ + ++ E + R
Sbjct: 121 IQKVREAEREHIFNKFKEREDSIVTGIIRRIDNRKNIFIEIDGIELILPPAEQSVSDVYR 180
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
G+R+K Y+ V + + P++L+SR + + KLF +E+PEI +GI+++K+V+R+ GSRA
Sbjct: 181 VGERIKVYVLSVEKTNKFPKILISRKNEGLLKKLFEIEIPEITSGIIEIKSVAREAGSRA 240
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV+S +ID VGAC+G RG+R++ +V EL E+IDIV W P FV L PA+V+
Sbjct: 241 KVAVYSEVPNIDTVGACIGQRGARIKNIVDELNGERIDIVEWKPVVEEFVSAVLSPAVVS 300
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354
V + ED G V+V QLSLAIG+ GQN RLA++LTG +DI E +++ +++
Sbjct: 301 NVTILED-GTARVLVAPSQLSLAIGKNGQNARLAARLTGMRVDIKVIENETLKEEEN 356
>gi|19705318|ref|NP_602813.1| transcription elongation factor NusA [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
gi|296328566|ref|ZP_06871085.1| transcription termination factor NusA [Fusobacterium nucleatum
subsp. nucleatum ATCC 23726]
gi|19713289|gb|AAL94112.1| N utilization substance protein A [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|296154375|gb|EFG95174.1| transcription termination factor NusA [Fusobacterium nucleatum
subsp. nucleatum ATCC 23726]
Length = 357
Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats.
Identities = 128/357 (35%), Positives = 219/357 (61%), Gaps = 4/357 (1%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
M + + L+ D + EK I ++ VL + ++ A + YG ++ V ++ E GDI
Sbjct: 1 MKAKDSKNFLEALDELEREKGISKESVLEAIELALLAAYKKNYGEDENVEVIVDRENGDI 60
Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+F +V +++ + +ISL+ A+ + +G + + DF R AVQ+ KQ++
Sbjct: 61 KVFASKIIVNADDLLDPNKEISLEDAKKIKKRVKVGDTLKFEVNCEDFRRNAVQNGKQIV 120
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLR 177
IQKVREAER+ + +FK++ I++G ++R++ N+ +++ + ++ E + R
Sbjct: 121 IQKVREAEREHIFNKFKEREDSIVTGIIRRIDNRKNIFIEIDGIELILPPAEQSISDVYR 180
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
G+R+K YI V + + P++L+SR + + KLF +E+PEI +GI+++K+V+R+ GSRA
Sbjct: 181 VGERIKVYILSVEKTNKFPKILISRKNEGLLKKLFEIEIPEITSGIIEIKSVAREAGSRA 240
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV+S +ID VGAC+G RG+R++ +V EL E+IDIV W P FV L PA+V+
Sbjct: 241 KVAVYSEVPNIDTVGACIGQRGARIKNIVDELNGERIDIVEWKPVIEEFVSAVLSPAVVS 300
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354
V + ED G V+V QLSLAIG+ GQN RLA++LTG +DI + +++ +++
Sbjct: 301 NVTILED-GTARVLVEPSQLSLAIGKNGQNARLAARLTGMRVDIKVIDSEALKEEEN 356
>gi|238063380|ref|ZP_04608089.1| transcription elongation factor nusA [Micromonospora sp. ATCC
39149]
gi|237885191|gb|EEP74019.1| transcription elongation factor nusA [Micromonospora sp. ATCC
39149]
Length = 347
Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats.
Identities = 134/358 (37%), Positives = 200/358 (55%), Gaps = 27/358 (7%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
L A+ E+ I D +L+ + ++ A R G S RVEI+ + G ++
Sbjct: 5 LAALRALEREREIPFDTILAAIETALLTAYRHTEGAESHARVEIDRKNGAALVY------ 58
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
A++ D + V P DFGR+A +AKQVI+Q++REA +
Sbjct: 59 --------------AQELDDDGTV--VREWDDTPHDFGRIAAMTAKQVILQRLREATDEV 102
Query: 130 QYLEFKDKVGEIISGTVK----RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
+ E+ + G++++G V+ R E G V VDLG +GV+ + E + E G+R++
Sbjct: 103 HFGEYVGRDGDLVTGVVQAHEARSEKGIVSVDLGKLEGVLPQSEQVPGERYTHGERIRCV 162
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ V + RGPQ+ LSR+HP + KLF +EVPEI +G V++ A++R+ G R K+AV S+
Sbjct: 163 VVHVAKGMRGPQITLSRSHPALVKKLFALEVPEIADGTVEIGAIAREAGHRTKIAVRSAV 222
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDED 304
++ GAC+G G RV+AV++EL EKIDI+ WS D ATFV NAL PA +V +D
Sbjct: 223 PGVNAKGACIGPMGQRVRAVMSELHGEKIDIIDWSDDPATFVGNALSPAKALRVEVVDLA 282
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
V VP QLSLAIGR GQN RLA++LTGW IDI ++ E + + + +
Sbjct: 283 TRTARVTVPDFQLSLAIGREGQNARLAARLTGWRIDIRSDAEQATTAARSAADHVREP 340
>gi|294784277|ref|ZP_06749572.1| transcription termination factor NusA [Fusobacterium sp. 3_1_27]
gi|294488143|gb|EFG35494.1| transcription termination factor NusA [Fusobacterium sp. 3_1_27]
Length = 357
Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats.
Identities = 129/357 (36%), Positives = 219/357 (61%), Gaps = 4/357 (1%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
M + + L+ D + EK I ++ VL + ++ A + YG ++ V ++ GDI
Sbjct: 1 MKAKDSKNFLEALDELEREKGISKESVLEAIELALLAAYKKNYGEDENVEVVVDRANGDI 60
Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+F VV+ + + +ISL+ A+ + IG V+ + +F R AVQ+ KQ++
Sbjct: 61 KVFASKTVVDADNLLDPNEEISLEDAKQIKKRVKIGDVLKFEVDCENFRRNAVQNGKQIV 120
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLR 177
IQKVREAER+ + +FK++ I++G ++R++ N+ +++ + ++ E + R
Sbjct: 121 IQKVREAEREHIFNKFKEREDSIVTGIIRRIDNRKNIFIEIDGIELILPPVEQSLSDVYR 180
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
G+R+K YI V + + P++L+SR + + KLF +E+PEI +GI+++K+V+R+ GSRA
Sbjct: 181 VGERIKVYILSVEKTNKFPKILISRKNEGLLKKLFEIEIPEITSGIIEIKSVAREAGSRA 240
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV+S+ +ID VGAC+G RG+R++ +V EL E+IDIV W P FV L PA+V+
Sbjct: 241 KVAVYSAVPNIDTVGACIGQRGARIKNIVDELNGERIDIVEWKPVVEEFVSAVLSPAVVS 300
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354
V + ED G V+V QLSLAIG+ GQN RLA++LTG +DI + +++ +++
Sbjct: 301 NVTILED-GTARVLVEPSQLSLAIGKNGQNARLAARLTGMRVDIKVIDNETLKEEEN 356
>gi|256379832|ref|YP_003103492.1| transcription elongation factor NusA [Actinosynnema mirum DSM
43827]
gi|255924135|gb|ACU39646.1| NusA antitermination factor [Actinosynnema mirum DSM 43827]
Length = 337
Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats.
Identities = 137/347 (39%), Positives = 198/347 (57%), Gaps = 27/347 (7%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ A+ +K I D VL + ++ A + G RVEI+ ++G + +
Sbjct: 5 IAALRAIERDKDIPFDTVLEAIETALLTAYKHTDGHHPHSRVEIDRKSGAVRVL------ 58
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
A+D P + D P FGR+A +A+QVI+Q++R+AE +R
Sbjct: 59 --------------AQDLGPDGVVTEEWDD--TPEGFGRIAATTARQVILQRLRDAEHER 102
Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
+ EF K GEII G V+R N V+V +G+++GV+ E + E + G R+K Y
Sbjct: 103 TFGEFSAKEGEIIGGVVQRDARANARGMVVVQVGDTEGVLPPAEQVPGEEYKHGARIKCY 162
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ V R RGPQ+ LSRTHP + +LF +EVPEI +G V++ AV+R+ G R+K+AV +S
Sbjct: 163 VVGVSRSARGPQITLSRTHPNLVRRLFALEVPEIADGTVEIPAVAREAGHRSKIAVRTSV 222
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304
++ GAC+G G+RV+ V++EL EKIDI+ S D ATFV NAL PA V V + DE
Sbjct: 223 PGVNAKGACIGPMGARVRNVMSELAGEKIDIIDHSDDPATFVGNALSPAKVVSVRVLDER 282
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351
V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ E
Sbjct: 283 AKTARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDAEAVQKD 329
>gi|269127538|ref|YP_003300908.1| NusA antitermination factor [Thermomonospora curvata DSM 43183]
gi|268312496|gb|ACY98870.1| NusA antitermination factor [Thermomonospora curvata DSM 43183]
Length = 351
Score = 304 bits (780), Expect = 2e-80, Method: Composition-based stats.
Identities = 135/342 (39%), Positives = 199/342 (58%), Gaps = 24/342 (7%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ ++ EK I ++V + D++ A G RVE++ +TG ++++
Sbjct: 1 MAALRSLESEKDISLELVAQAIEDALLIAYHRTEGAAPRARVELDRKTGHVTVW------ 54
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
A + D ++ D P DF R+A +AKQVI+QK+R+AE +
Sbjct: 55 --------------AAETDDEGNVLREYDD--TPEDFSRIAATTAKQVILQKLRDAEDEV 98
Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
+ E+ + G+I+SG +++ + NV+VDLG + ++ E + E+ GDR+++Y+
Sbjct: 99 TFGEYAGREGDIVSGVIQQGKDPRNVLVDLGRIEAILPPSEQVPGESYEHGDRIRAYVVQ 158
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
VR+ RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S +
Sbjct: 159 VRKGHRGPSVQLSRTHPNLVRKLFALEVPEIADGTVEIAAIAREAGHRTKIAVRSRKPGV 218
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307
+ GAC+G GSRV+ V+ ELR EKIDIV WS D A FV NAL PA V+ V +DE
Sbjct: 219 NAKGACIGPMGSRVRNVMHELRGEKIDIVDWSEDPAEFVGNALSPARVSSVQVIDEAART 278
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
VIVP QLSLAIG+ GQN RLA++LTGW IDI + E
Sbjct: 279 ARVIVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEVEQ 320
>gi|257465970|ref|ZP_05630281.1| transcription elongation factor NusA [Fusobacterium gonidiaformans
ATCC 25563]
gi|315917126|ref|ZP_07913366.1| transcription elongation factor NusA [Fusobacterium gonidiaformans
ATCC 25563]
gi|313691001|gb|EFS27836.1| transcription elongation factor NusA [Fusobacterium gonidiaformans
ATCC 25563]
Length = 353
Score = 304 bits (780), Expect = 2e-80, Method: Composition-based stats.
Identities = 129/344 (37%), Positives = 209/344 (60%), Gaps = 3/344 (0%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
M + + L+ D + EK I+++ +L + ++ A + YG ++ V I+ E GD+
Sbjct: 1 MTNKDARAFLEALDELEKEKGIEKESLLQAVEQALLTAYKKNYGDEENVEVVIDRENGDV 60
Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
++ + VV E++ + +ISL+ A+ +G V + F R A+Q+ KQ++
Sbjct: 61 KVYEVKTVVTEEDLYDAALEISLEEAKKISRRAKLGEEVRIEVDCESFRRNAIQNGKQIV 120
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177
IQKVREAER+ Y FK + GEI++G ++R E NV ++ G + ++ E + +
Sbjct: 121 IQKVREAERENIYDRFKAQEGEILTGIIRRIDERKNVFIEFGGIETILTAGEQCVSDRYK 180
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
G+R+K Y+ +V + + P++++SR H + KLF +E+PEI +G +++KAV+R+ GSRA
Sbjct: 181 VGNRIKVYLVEVEKTNKFPKIVISRRHEGLLRKLFELEIPEISSGAIEIKAVAREAGSRA 240
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV+S +ID VGAC+G + +R++ +V EL EKIDIV+W + FV L PA V
Sbjct: 241 KVAVYSELPNIDIVGACIGQKRARIKNIVDELGGEKIDIVIWKENMEEFVSAVLSPAKVN 300
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
V L ED V+V + QLSLAIG+ GQN RLA++LTG +DI
Sbjct: 301 SVELLEDGETARVLVDESQLSLAIGKSGQNARLAAKLTGMRVDI 344
>gi|228476580|ref|ZP_04061262.1| transcription termination factor NusA [Streptococcus salivarius
SK126]
gi|228251775|gb|EEK10840.1| transcription termination factor NusA [Streptococcus salivarius
SK126]
Length = 399
Score = 304 bits (780), Expect = 2e-80, Method: Composition-based stats.
Identities = 132/378 (34%), Positives = 214/378 (56%), Gaps = 15/378 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + EK I+++ ++ + +S++ A + YG VE N +TGD ++ + E
Sbjct: 4 EMLEAFRVLEEEKHINKEDIIDAVVESLKSAYKRRYGQSESAVVEFNEKTGDFQVYTVRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R+ R
Sbjct: 64 VVDEVFDSRLEISLKDALAISSAYELGDKIRFEESVDEFGRVAAQSAKQTIMEKMRKQMR 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y ++K GEI+ GTV+R + + V+LG + + R + I E+ + D + Y+Y
Sbjct: 124 EITYNDYKQHEGEIMQGTVERFDQRFIYVNLGTLEAQLSRQDQIPGESFKSHDVIDVYVY 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + +
Sbjct: 184 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG GS ++ VV+ E ID++ W D A F+ NA+ P
Sbjct: 244 VDAIGTIVGRGGSNIKKVVSRFHPTRLDAKTGIEVPVEENIDVIQWVEDPAEFIYNAIAP 303
Query: 294 AIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V V+ DED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 304 AEVDYVLFDEDDSKRATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYEALEA 363
Query: 353 KDFNERTQFFMQAINVDE 370
+ T+ + I ++
Sbjct: 364 EKAEAATEEVVDEIVAED 381
>gi|55820434|ref|YP_138876.1| transcription elongation factor NusA [Streptococcus thermophilus
LMG 18311]
gi|55822318|ref|YP_140759.1| transcription elongation factor NusA [Streptococcus thermophilus
CNRZ1066]
gi|55736419|gb|AAV60061.1| transcription termination-antitermination factor [Streptococcus
thermophilus LMG 18311]
gi|55738303|gb|AAV61944.1| transcription termination-antitermination factor [Streptococcus
thermophilus CNRZ1066]
Length = 395
Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats.
Identities = 134/388 (34%), Positives = 214/388 (55%), Gaps = 15/388 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + EK I+++ ++ + +S++ A + YG VE N +TGD +F + E
Sbjct: 4 EMLEAFRVLEEEKHINKEDIIDAVVESLKSAYKRRYGQSESAVVEFNEKTGDFQVFTVRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R+ R
Sbjct: 64 VVDEVFDSRLEISLKDALAISSAYELGDKIRFEESVDEFGRVAAQSAKQTIMEKMRKQMR 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y E+K GEI+ GTV+R + + V+LG + + R + I E+ + D + Y+Y
Sbjct: 124 EITYNEYKQHEGEIMQGTVERFDQRFIYVNLGTLEAQLSRQDQIPGESFKSHDVIDVYVY 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + +
Sbjct: 184 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG GS ++ VV+ E ID++ W D A F+ NA+ P
Sbjct: 244 VDAIGTIVGRGGSNIKKVVSRFHPTRLDAKTGIEVPVEENIDVIQWVEDPAEFIYNAIAP 303
Query: 294 AIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V V+ DED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 304 AEVDYVLFDEDDSKRATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYEALEA 363
Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEG 380
+ ++ I + + E
Sbjct: 364 EKAEAEVDEVVEEIVAEATPVDVSTEEA 391
>gi|148543928|ref|YP_001271298.1| NusA antitermination factor [Lactobacillus reuteri DSM 20016]
gi|184153324|ref|YP_001841665.1| transcription termination-antitermination factor [Lactobacillus
reuteri JCM 1112]
gi|227364837|ref|ZP_03848884.1| transcription termination factor NusA [Lactobacillus reuteri MM2-3]
gi|325682537|ref|ZP_08162054.1| N utilization substance protein A [Lactobacillus reuteri MM4-1A]
gi|148530962|gb|ABQ82961.1| NusA antitermination factor [Lactobacillus reuteri DSM 20016]
gi|183224668|dbj|BAG25185.1| transcription termination-antitermination factor [Lactobacillus
reuteri JCM 1112]
gi|227070100|gb|EEI08476.1| transcription termination factor NusA [Lactobacillus reuteri MM2-3]
gi|324978376|gb|EGC15326.1| N utilization substance protein A [Lactobacillus reuteri MM4-1A]
Length = 395
Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats.
Identities = 141/375 (37%), Positives = 217/375 (57%), Gaps = 27/375 (7%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E++ D + EK I +++V+ + +++ A + YG ++ VE N TG+I ++ +
Sbjct: 7 NTEMIGALDYLEKEKGIKKEIVIEALEQALESAYKQNYG-DKNVEVEFNSLTGNIKVYAV 65
Query: 66 LEVVEEVE----NYTCQISLKVARDR--DPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119
+ ++ E + +SL AR DIG + + + P DFGR+A Q+AKQV++
Sbjct: 66 KTITDDEEAVEADSNEFMSLADARKLPHGQGYDIGDEIREEVTPRDFGRIAAQTAKQVVM 125
Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRP 178
Q++RE ER Y +K EII+G V R + VDLG +G + + + E+
Sbjct: 126 QRLREEERKIIYDRYKTYENEIITGEVSREDKRFTYVDLGDGVEGAMGFRDKMPNEHYHV 185
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
DR++ Y+ V ++RGPQ+ +SRT P+ + +LF EVPEI +G V ++ ++R+ G RAK
Sbjct: 186 HDRIQVYVTKVNDDRRGPQIFVSRTAPELLKRLFEREVPEIKDGTVLIENIAREAGDRAK 245
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV+S+D ++DPVG CVG RGSRVQA+V EL E +DIV + D A F+ NAL PA V
Sbjct: 246 VAVYSNDPNVDPVGTCVGPRGSRVQAIVNELDGENMDIVEYVKDPAKFIANALNPAEVLD 305
Query: 299 VVLDED-------------------VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
V+ +E+ V+VP QLSLAIG+RGQN RLA++LT + I
Sbjct: 306 VIFNEEKAASETEDSEGEETTEGQTERSCTVVVPDSQLSLAIGKRGQNARLAARLTKYKI 365
Query: 340 DIITEEEDSINRQKD 354
DI +E E + N Q+
Sbjct: 366 DIKSESEMAENDQES 380
>gi|325847934|ref|ZP_08170105.1| transcription termination factor NusA [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
gi|325480803|gb|EGC83857.1| transcription termination factor NusA [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
Length = 410
Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats.
Identities = 144/410 (35%), Positives = 242/410 (59%), Gaps = 1/410 (0%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E + + + K++D+ ++L + ++ K+ + Y ++ V I+ ETG+I ++ L
Sbjct: 2 NKEFIIALEELEKSKNVDKKIILEALEKALVKSYQKNYENNENVDVNIDEETGEIEVYSL 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV+EV + +IS AR+ D +D+G + + P +FGRVA Q+A+ +++QK+R+A
Sbjct: 62 KNVVDEVNDPIAEISKTKAREIDSKLDLGDICRVKIAPKNFGRVAAQTARNIVLQKIRDA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
+RD Y E+ D+ EII+G V+R + NV ++L +G+I E + E R+K
Sbjct: 122 QRDSVYSEYLDRANEIITGVVQREDKYNVYINLDKIEGIIPLKEQVENEKYIANQRIKVL 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I DV+ + PQ++LSR +V+LF +EVPEI NGI+++ + R+ GSR K+AVFS+D
Sbjct: 182 IKDVKNTTKEPQIILSRKDKDLVVRLFELEVPEITNGIIEIYGIDREAGSRTKIAVFSND 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
ID +GAC+G +GSRV ++V EL+ EKIDI+ + D TF+ N+L PA + +V +++
Sbjct: 242 PEIDSIGACIGFKGSRVNSIVEELQGEKIDIINYDKDIKTFIKNSLSPAEINEVYINDMK 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
+ V+V ++QLSLAIG+ GQN RLA++LTGW IDI ++EE Q + +E +
Sbjct: 302 KQSLVVVREDQLSLAIGKEGQNARLAARLTGWKIDIKSQEEFDKLDQDEIDEILGLNEEE 361
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415
+ E I + VE+ +I ++ ++ E ++ E
Sbjct: 362 DEIIENIDGEI-ENSLDQVEDETDFIEDDIENLSEDLDQIIKEDIEKSEE 410
>gi|158313032|ref|YP_001505540.1| NusA antitermination factor [Frankia sp. EAN1pec]
gi|158108437|gb|ABW10634.1| NusA antitermination factor [Frankia sp. EAN1pec]
Length = 361
Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats.
Identities = 139/350 (39%), Positives = 202/350 (57%), Gaps = 28/350 (8%)
Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70
+ EK I D ++ + ++ A + G+ D RV I+ +G++++F
Sbjct: 6 AALRGIEREKEIAFDTLVEAIETALLTAYKHTTGSADDARVVIDRTSGEVAVF------- 58
Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130
AR+ P G P DFGR+A +AKQVI+Q++REA+++
Sbjct: 59 -------------ARESGPD---GTSREWDDTPADFGRIATMTAKQVIMQRLREAQQEVT 102
Query: 131 YLEFKDKVGEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
Y ++ D+ E++SG V+ E V+VDLG +GV+ E + E L GDR+K Y+
Sbjct: 103 YGQYADREHEVVSGVVQHHEQRAGSRVVLVDLGTVEGVLPPAEQVPGERLEHGDRIKCYV 162
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
V R GP V LSRTHP+ + LF +EVPE+ +G V++ A++R+ G R K+AV S +
Sbjct: 163 VHVARGMHGPTVTLSRTHPELVKGLFRLEVPEVADGTVELAAIAREAGHRTKIAVRSKAA 222
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDV 305
++P GAC+G GSRV+AV+ EL EKIDIV WS D A+FV +AL PA V++V + D
Sbjct: 223 GVNPKGACIGPMGSRVRAVMAELHGEKIDIVDWSADPASFVGSALSPARVSRVEVTDLAS 282
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355
V+VP QLSLAIGR GQN RLA++LTGW IDI ++ E S R +
Sbjct: 283 RSARVVVPDYQLSLAIGREGQNARLAARLTGWRIDIHSDTEGSEPRAERP 332
>gi|317125351|ref|YP_004099463.1| NusA antitermination factor [Intrasporangium calvum DSM 43043]
gi|315589439|gb|ADU48736.1| NusA antitermination factor [Intrasporangium calvum DSM 43043]
Length = 339
Score = 304 bits (778), Expect = 3e-80, Method: Composition-based stats.
Identities = 131/339 (38%), Positives = 200/339 (58%), Gaps = 13/339 (3%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
L A+ E+ I DV++ + ++ A G+ RVE++ +TG + ++
Sbjct: 5 LAALRALERERGISLDVLIPAIEQALLVAYHRTEGSYRSARVELDRKTGHVVVWAR---- 60
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
EE + + + + +P + P+ FGR+A +A+QVI+Q++R+ E ++
Sbjct: 61 EEGDLLPAEEG-ERPQRGEPGPEFDDT------PVGFGRIAASTARQVIVQRLRDLEDEQ 113
Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
+FK + G++ISG +++ + NV+VD G +G++ E + E G+R++ Y+
Sbjct: 114 ILGDFKGREGDVISGVIQQSQDPRNVLVDFGAVEGILPLAEQVPGERYVHGERLRCYVVS 173
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V+R RGPQV LSRTHP + LF EVPEI +G V++ A++R+ G R K+AV S +
Sbjct: 174 VKRGPRGPQVGLSRTHPNLVRTLFKFEVPEIADGTVEIAALARESGHRTKIAVHSKVPGV 233
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307
+ GAC+G G+RV+AV+TELR EKIDIV +S D ATFV AL PA V V + D
Sbjct: 234 NAKGACIGPMGARVRAVMTELRGEKIDIVDYSEDPATFVAAALSPARVQSVEIVDAAART 293
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346
V+VP QLSLAIG+ GQN RLA++LTGW IDI + E
Sbjct: 294 ARVVVPDYQLSLAIGKEGQNARLAAKLTGWRIDIRPDTE 332
>gi|256544696|ref|ZP_05472068.1| transcription termination factor NusA [Anaerococcus vaginalis ATCC
51170]
gi|256399585|gb|EEU13190.1| transcription termination factor NusA [Anaerococcus vaginalis ATCC
51170]
Length = 415
Score = 303 bits (777), Expect = 3e-80, Method: Composition-based stats.
Identities = 140/421 (33%), Positives = 242/421 (57%), Gaps = 7/421 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E + + + K++D+ ++L + ++ K+ + Y ++ V I+ ETG+I ++ L
Sbjct: 2 NKEFIIALEELEKTKNVDKRIILEALEKALVKSYQKNYDNNENVDVSIDDETGEIEVYSL 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VVEEV +IS A++ DP +D+G + + P +FGRVA Q+A+ ++IQK+R+A
Sbjct: 62 KNVVEEVNEPIAEISKTKAKEIDPKLDLGDICRVKIAPKNFGRVAAQTARNIVIQKIRDA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
+RD Y E+ D+ EII+G V+R + N+ ++L +G+I E + E P R+K
Sbjct: 122 QRDSVYSEYLDRANEIITGVVQREDKFNIYINLDKIEGIIPLKEQVENETYTPNQRIKVL 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I +V+ + PQ++LSR +V+LF +EVPEI NGI+++ + R+ GSR K+AVFS+D
Sbjct: 182 IKEVKNTTKEPQIILSRKDKALVVRLFELEVPEITNGIIEIYGIDREAGSRTKIAVFSND 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
ID +GAC+G +GSRV ++V EL+ EKIDI+ + D F+ N+L PA + +V +++
Sbjct: 242 PEIDSIGACIGFKGSRVNSIVEELQGEKIDIINYDKDIKVFIKNSLSPAEINEVYINDKK 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
+ V+V ++QLSLAIG+ GQN RLA++LTGW IDI ++EE + +
Sbjct: 302 KQSLVVVREDQLSLAIGKEGQNARLAARLTGWKIDIKSQEEFDQL-------SQEEIDEI 354
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425
+ ++E L E++ + ++ D+E ++ + ++
Sbjct: 355 LGLNEQTDKDLENIEENSKEDILEDENAQQGENLDIDKENIEDLSNDLDQIIKEDIEESD 414
Query: 426 K 426
+
Sbjct: 415 E 415
>gi|302872115|ref|YP_003840751.1| transcription termination factor NusA [Caldicellulosiruptor
obsidiansis OB47]
gi|302574974|gb|ADL42765.1| transcription termination factor NusA [Caldicellulosiruptor
obsidiansis OB47]
Length = 356
Score = 303 bits (777), Expect = 4e-80, Method: Composition-based stats.
Identities = 133/347 (38%), Positives = 209/347 (60%), Gaps = 8/347 (2%)
Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM----SDIRVEINPETG 58
+ + EL D + E I+RD + SV+ ++ A + + G S+++V I PE G
Sbjct: 7 TLDFQELFSAIDELEREYKIERDYIYSVLESALLTAYKQVKGIKDKNLSNVKVSIEPEKG 66
Query: 59 DISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+ ++ +VVE V++ +ISL+ A+ D +G +V +P F R A + +Q +
Sbjct: 67 SVKIYEYRKVVENVKDRKSEISLEDAQKIDKRYKVGDIVVIEVPISQFSRKAAMTVRQTV 126
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENL 176
I K+RE + + ++ KV I++G ++R++ NVIV++ G + ++ +E I E
Sbjct: 127 IGKIREKRKSIIFEDYSSKVDNIVTGIIQRIDKKNVIVEIEGGKVEAILPMEEQIPGEEY 186
Query: 177 RPGDRVKSYIYDVRREQRGPQ--VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234
+PG +K YI +V+ + + V LSRTHP + +L EVPEI GI+++KA++R+ G
Sbjct: 187 KPGVMMKFYITEVKIPPKEKEPIVYLSRTHPNLIKRLMENEVPEIQEGIIEIKAIAREAG 246
Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294
SR+K+AV+S+ +DPVGAC+G +G R+Q V+ L EKIDIV WS D F+ NAL PA
Sbjct: 247 SRSKVAVYSNSLKVDPVGACIGEKGIRIQNVLKHLNGEKIDIVKWSSDIGEFIKNALSPA 306
Query: 295 IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
V + L+ + V+VP QLSLAIG+ GQN RLA++LTGW IDI
Sbjct: 307 EVVHIDLNLIEKKAFVLVPNSQLSLAIGKGGQNARLAAKLTGWKIDI 353
>gi|145593916|ref|YP_001158213.1| transcription elongation factor NusA [Salinispora tropica CNB-440]
gi|145303253|gb|ABP53835.1| transcription termination factor NusA [Salinispora tropica CNB-440]
Length = 347
Score = 303 bits (777), Expect = 4e-80, Method: Composition-based stats.
Identities = 137/354 (38%), Positives = 198/354 (55%), Gaps = 27/354 (7%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
L A+ E+ I D +L+ + ++ A R G RVEI+ +TG +F
Sbjct: 5 LAALRALEREREIPFDTILAAIETALLTAYRHTEGAQPHARVEIDRKTGAALVF------ 58
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
A++ +P G V P DFGR+A +AKQVI+Q++REA +
Sbjct: 59 --------------AQEVEPDG--GVVREWDDTPHDFGRIAAMTAKQVILQRLREATDEV 102
Query: 130 QYLEFKDKVGEIISGTVK----RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
+ E+ + G++++G V+ R E G V VDLG +GV+ + E + E G+RV+
Sbjct: 103 HFGEYVGRDGDLVTGVVQAHEARAEKGIVSVDLGKLEGVLPQSEQVPGEQYAHGERVRCV 162
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ V + RGPQV LSR+HP + KLF +EVPEI +G V++ A++R+ G R K+AV S+
Sbjct: 163 VVHVAKGVRGPQVTLSRSHPALVKKLFALEVPEIADGTVEITAIAREAGHRTKIAVRSTA 222
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDED 304
+ ++ GAC+G G RV+AV+ EL EKIDI+ WS D A FV NAL PA +V +D
Sbjct: 223 AGVNAKGACIGPMGQRVRAVMGELHGEKIDIIDWSEDPAAFVGNALSPAKALRVEVVDLA 282
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
V VP QLSLAIGR GQN RLA++LTGW IDI ++ E + +
Sbjct: 283 SRTARVTVPDFQLSLAIGREGQNARLAARLTGWRIDIRSDAEPARPAGNAEADH 336
>gi|111225121|ref|YP_715915.1| transcription elongation protein nusA [Frankia alni ACN14a]
gi|111152653|emb|CAJ64394.1| Transcription elongation protein nusA [Frankia alni ACN14a]
Length = 365
Score = 303 bits (777), Expect = 4e-80, Method: Composition-based stats.
Identities = 141/343 (41%), Positives = 198/343 (57%), Gaps = 28/343 (8%)
Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70
+ EK I D ++ M ++ A G+ D RV I+ TG++S+
Sbjct: 6 AALRGIEREKDIAFDTLVQAMETALLTAYHHTAGSAPDARVVIDRTTGEVSVL------- 58
Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130
AR+ P G P DFGR+A +AKQVI+Q++REA+++
Sbjct: 59 -------------AREPGPD---GTSREYDDTPADFGRIATMTAKQVIMQRLREAQQEVT 102
Query: 131 YLEFKDKVGEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
Y ++ D+ E++SG V+ E V+VDLG +GV+ E + E L GDR+K Y+
Sbjct: 103 YGQYADREHEVVSGVVQHHEQRAGSKVVLVDLGTIEGVLPPAEQVPGERLEHGDRIKCYV 162
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
V R GP V LSRTHP+ + LF +EVPE+ +G V++ A++R+ G R+K+AV S +
Sbjct: 163 VHVARGPHGPTVTLSRTHPELVKGLFRLEVPEVADGTVELAAIAREAGHRSKIAVRSKVA 222
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDV 305
++P GAC+G GSRV+AV+ EL EKIDIV WS D ATFV +AL PA V +V + D
Sbjct: 223 GVNPKGACIGPMGSRVRAVMAELHGEKIDIVDWSADPATFVGSALSPARVARVEVTDLAS 282
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
V+VP QLSLAIGR GQN RLA++LTGW IDI ++ ED
Sbjct: 283 RSARVVVPDYQLSLAIGREGQNARLAARLTGWRIDIHSDAEDR 325
>gi|160902006|ref|YP_001567587.1| transcription elongation factor NusA [Petrotoga mobilis SJ95]
gi|160359650|gb|ABX31264.1| NusA antitermination factor [Petrotoga mobilis SJ95]
Length = 341
Score = 303 bits (776), Expect = 4e-80, Method: Composition-based stats.
Identities = 128/339 (37%), Positives = 212/339 (62%), Gaps = 2/339 (0%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
L LL+ DA+ +K I RD ++ ++A SI+ A + YG ++ +EI+ +++++L
Sbjct: 2 NLNLLEALDALERDKGISRDSLVDIIAKSIKSAYKKNYGA-KNVEIEIDKNLTKLNVYQL 60
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM-DFGRVAVQSAKQVIIQKVRE 124
+VVE VEN +ISL+ A+ +P I+IG +V + DF RVA Q+AKQVI+Q ++E
Sbjct: 61 WKVVETVENPKEEISLEEAKKINPKIEIGEMVRKKINLKKDFRRVAAQTAKQVILQNLKE 120
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
E+ + ++ I + + +V + + +G + + ETI E + G+ VK
Sbjct: 121 LEKKNLFDKYVALKNRISTAEIIKVSDEYIDIRIGKLETKLPMKETIPGETFKSGELVKV 180
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
YI +++ +GP++++SRT P+ + +L VPEI GI+++ + R+PG R K+AV SS
Sbjct: 181 YIKNIQNTSKGPKIMVSRTVPELITELLSSIVPEIEEGIIKIVKIVREPGIRTKVAVVSS 240
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
+DPVGAC+G +GSR+ ++ EL++EK+DI+ +S D F+ +AL PA V ++L+ED
Sbjct: 241 MPGVDPVGACIGEKGSRISELLKELKNEKVDIIEYSEDPKIFIKHALAPAEVKNIILNED 300
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343
V VP+ QLSLA+G+ GQ RLA+++TGW IDI +
Sbjct: 301 EKTAFVYVPENQLSLAVGKGGQTARLAAKITGWKIDIHS 339
>gi|171778095|ref|ZP_02919352.1| hypothetical protein STRINF_00187 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171283077|gb|EDT48501.1| hypothetical protein STRINF_00187 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 397
Score = 303 bits (776), Expect = 5e-80, Method: Composition-based stats.
Identities = 128/349 (36%), Positives = 205/349 (58%), Gaps = 15/349 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + EK I++D ++ + +S++ A + YG +E + + GD ++ + E
Sbjct: 7 EMLEAFRILEEEKHINKDDIIDAVKESLKSAYKRRYGQSESCVIEFDDKKGDFKVYTVRE 66
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + +ISL A + ++G + +FGRVA QSAKQ I++K+R R
Sbjct: 67 VVEEVFDSRLEISLSDALKISSAYELGDKIRFEESVAEFGRVAAQSAKQTIMEKMRRQIR 126
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y E+K GEI++GTV+R + + V+LG+ + + + I E + DR++ Y+Y
Sbjct: 127 EVTYNEYKQHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETWKSHDRIEVYVY 186
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +G V +SR+HPQF+ ++ E+PE+++G V++ +VSR+ G R K+AV S + +
Sbjct: 187 KVENNPKGVNVFVSRSHPQFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 246
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG GS ++ V+++ E ID++ W D A F+ NA+ P
Sbjct: 247 VDAIGTIVGRGGSNIKKVISKFHPKRYDAKAGVEVPVEENIDVIQWVEDPAEFIYNAIAP 306
Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
A V V+ D ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI
Sbjct: 307 AEVDMVLFDEEDSKRATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDI 355
>gi|116627258|ref|YP_819877.1| transcription elongation factor NusA [Streptococcus thermophilus
LMD-9]
gi|116100535|gb|ABJ65681.1| Transcription elongation factor [Streptococcus thermophilus LMD-9]
gi|312277742|gb|ADQ62399.1| Putative transcription factor [Streptococcus thermophilus ND03]
Length = 391
Score = 303 bits (776), Expect = 5e-80, Method: Composition-based stats.
Identities = 133/387 (34%), Positives = 213/387 (55%), Gaps = 15/387 (3%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+L+ + EK I+++ ++ + +S++ A + YG VE N +TGD +F + EV
Sbjct: 1 MLEAFRVLEEEKHINKEDIIDAVVESLKSAYKRRYGQSESAVVEFNEKTGDFQVFTVREV 60
Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
V+EV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R+ R+
Sbjct: 61 VDEVFDSRLEISLKDALAISSAYELGDKIRFEESVDEFGRVAAQSAKQTIMEKMRKQMRE 120
Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
Y E+K GEI+ GTV+R + + V+LG + + R + I E+ + D + Y+Y
Sbjct: 121 ITYNEYKQHEGEIMQGTVERFDQRFIYVNLGTLEAQLSRQDQIPGESFKSHDVIDVYVYK 180
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + ++
Sbjct: 181 VENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPNV 240
Query: 249 DPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRPA 294
D +G VG GS ++ VV+ E ID++ W D A F+ NA+ PA
Sbjct: 241 DAIGTIVGRGGSNIKKVVSRFHPTRLDAKTGIEVPVEENIDVIQWVEDPAEFIYNAIAPA 300
Query: 295 IVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353
V V+ DED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E +
Sbjct: 301 EVDYVLFDEDDSKRATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYEALEAE 360
Query: 354 DFNERTQFFMQAINVDEIIAHLLVAEG 380
++ I + + E
Sbjct: 361 KAEAEVDEVVEEIVAEATPVDVTTEEA 387
>gi|239617901|ref|YP_002941223.1| NusA antitermination factor [Kosmotoga olearia TBF 19.5.1]
gi|239506732|gb|ACR80219.1| NusA antitermination factor [Kosmotoga olearia TBF 19.5.1]
Length = 342
Score = 303 bits (775), Expect = 6e-80, Method: Composition-based stats.
Identities = 129/325 (39%), Positives = 200/325 (61%), Gaps = 1/325 (0%)
Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQI 79
K+I +D V+S++ ++Q A R +GT +++ V I+ TGDI+++ L+VV+EVEN +I
Sbjct: 16 KNIKKDEVISILEKALQSAYRKNFGTENEVEVRIDRLTGDIAIYEKLKVVDEVENPYREI 75
Query: 80 SLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVG 139
+L A+ D +I G V L F R+A Q+A+QV+IQK+RE E++ + + G
Sbjct: 76 TLSEAKKIDSDAEIDGYVYRKLNIKKFKRIAAQTARQVLIQKIREMEKENLFQTYSALKG 135
Query: 140 EIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVL 199
+ + + RV + +G + + E I E LR G +K ++ DV R +GP++L
Sbjct: 136 SVTTAEILRVTENWADIRIGKLESRLPTREMIPGERLRAGSFIKVFVVDVVRTTKGPKIL 195
Query: 200 LSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRG 259
++R +F+V+L ++VPEI +G V VKAV+R+ G R K+AV S++ +DP+GAC+G G
Sbjct: 196 VTRKGTEFVVELLKLQVPEIESGDVVVKAVAREEGIRTKVAVASTNPKVDPIGACIGEGG 255
Query: 260 SRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLS 318
R+ V+ E+R EK+DI+ WS D A FV NA+ PA +V + V V QLS
Sbjct: 256 VRIAEVLREIRPEKVDILKWSDDPAEFVGNAIAPATAVEVKIVSSANREAVVYVSPTQLS 315
Query: 319 LAIGRRGQNVRLASQLTGWTIDIIT 343
LAIG+ GQN RLA++LTGW +DI
Sbjct: 316 LAIGKGGQNARLAAKLTGWKVDIKP 340
>gi|227544951|ref|ZP_03975000.1| transcription termination factor NusA [Lactobacillus reuteri
CF48-3A]
gi|300910018|ref|ZP_07127478.1| transcription termination factor NusA [Lactobacillus reuteri
SD2112]
gi|227185062|gb|EEI65133.1| transcription termination factor NusA [Lactobacillus reuteri
CF48-3A]
gi|300892666|gb|EFK86026.1| transcription termination factor NusA [Lactobacillus reuteri
SD2112]
Length = 395
Score = 303 bits (775), Expect = 6e-80, Method: Composition-based stats.
Identities = 141/390 (36%), Positives = 220/390 (56%), Gaps = 27/390 (6%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E++ D + EK I +++V+ + +++ A + YG ++ VE N TG+I ++ +
Sbjct: 7 NTEMIGALDYLEKEKGIKKEIVIEALEQALESAYKQNYG-DKNVEVEFNSLTGNIKVYAV 65
Query: 66 LEVVEEVE----NYTCQISLKVARDR--DPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119
+ ++ E + +SL AR DIG + + + P DFGR+A Q+AKQV++
Sbjct: 66 KTITDDEEAVEADSNEFMSLADARKLPHGQGYDIGDEIREEVTPRDFGRIAAQTAKQVVM 125
Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRP 178
Q++RE ER Y ++K EII+G V R + VDLG +G + + + E+
Sbjct: 126 QRLREEERKIIYDKYKTYENEIITGEVSREDKRFTYVDLGDGVEGAMGFRDKMPNEHYHV 185
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
DR++ Y+ V ++RGPQ+ +SRT P+ + +LF EVPEI +G V ++ ++R+ G RAK
Sbjct: 186 HDRIQVYVTKVNDDRRGPQIFVSRTAPELLKRLFEREVPEIKDGTVLIENIAREAGDRAK 245
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV+S+D ++DPVG CVG RGSRVQA+V EL E +DIV + + A F+ NAL PA V
Sbjct: 246 VAVYSNDPNVDPVGTCVGPRGSRVQAIVNELDGENMDIVEYVKEPAKFIANALNPAEVLD 305
Query: 299 VVLDED-------------------VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
V+ +E+ V+VP QLSLAIG+RGQN RLA++LT + I
Sbjct: 306 VIFNEEKAASETEDSEGEETTEGQTERSCTVVVPDSQLSLAIGKRGQNARLAARLTKYKI 365
Query: 340 DIITEEEDSINRQKDFNERTQFFMQAINVD 369
DI +E E + N Q+ N +
Sbjct: 366 DIKSESEMAENDQESEEVADSEENVDNNEE 395
>gi|332523131|ref|ZP_08399383.1| transcription termination factor NusA [Streptococcus porcinus str.
Jelinkova 176]
gi|332314395|gb|EGJ27380.1| transcription termination factor NusA [Streptococcus porcinus str.
Jelinkova 176]
Length = 384
Score = 303 bits (775), Expect = 6e-80, Method: Composition-based stats.
Identities = 132/374 (35%), Positives = 215/374 (57%), Gaps = 15/374 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + EK I++D ++ + +S++ A + YG +E N +TGD +F + E
Sbjct: 4 EMLEAFRILEEEKHINKDDIIEAVTESLKSAYKRRYGQSESCVIEFNEKTGDFQVFSVRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + +ISL A + ++G + +FGRVA QSAKQ I++K+R R
Sbjct: 64 VVEEVFDSRLEISLSDALAISSAYELGDKIRFEESVAEFGRVAAQSAKQTIMEKMRRQMR 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR++ Y+Y
Sbjct: 124 EITYNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIEVYVY 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + +
Sbjct: 184 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG GS ++ V+++ E ID++ W D A F+ NA+ P
Sbjct: 244 VDAIGTIVGRGGSNIKKVISKFHPKRYDAKTGIEIPVEENIDVIQWVDDPAEFIYNAIAP 303
Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 304 AEVDMVLFDEIDSKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYDALET 363
Query: 353 KDFNERTQFFMQAI 366
+ + T ++ +
Sbjct: 364 EQEHVNTSEEVEQV 377
>gi|189485237|ref|YP_001956178.1| transcription antitermination factor NusA [uncultured Termite group
1 bacterium phylotype Rs-D17]
gi|170287196|dbj|BAG13717.1| transcription antitermination factor NusA [uncultured Termite group
1 bacterium phylotype Rs-D17]
Length = 418
Score = 303 bits (775), Expect = 6e-80, Method: Composition-based stats.
Identities = 141/390 (36%), Positives = 237/390 (60%), Gaps = 1/390 (0%)
Query: 31 MADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPS 90
+ +++ A + G ++ ++NPE G+++ + VV++V N +I ++ A+ D S
Sbjct: 29 IENALVSAYKKHVGKNVNVEAKVNPELGEMTASVVKVVVKDVVNPLLEICVQDAKKFDQS 88
Query: 91 IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVE 150
++IG V PL DF R+A Q+AKQVI+QK+RE+ERD + E K+K+G+I +G + R+
Sbjct: 89 VEIGTEVRIPLDTRDFSRIAAQTAKQVIVQKIRESERDSLFDEMKEKIGQIANGAIYRIT 148
Query: 151 YGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVK 210
N+IVDLG ++ ++ E + +E G +K+ I V + +G V+LSRT + + +
Sbjct: 149 NRNLIVDLGKTEAILPSSEQVFKEKFSVGQYIKAVIIKVEKSVKGSGVVLSRTSIELVKR 208
Query: 211 LFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELR 270
LF +EVPEIY IV++ V R+PG R K+ V S + +DPVGACVG++G+RV+ ++ ELR
Sbjct: 209 LFELEVPEIYEKIVEIVNVVREPGVRTKITVLSHNPKVDPVGACVGVKGARVKPIIDELR 268
Query: 271 DEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVR 329
E+ID+V +S D A ++ +A+ PA + V + E+ + EV+V + L LAIG+ G NVR
Sbjct: 269 GERIDLVSYSVDPAKYIASAMSPAKIVSVTTISEEEKKAEVLVTDDMLFLAIGKNGHNVR 328
Query: 330 LASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELAC 389
LA++LTGW ID+ +E + + ++ + F + E I +LV G DVE+L+
Sbjct: 329 LAAKLTGWHIDVKSEGQKKQEGNERIEKQAEVFEKLEGFSERIIKMLVKAGITDVEKLSL 388
Query: 390 VKISEIASIEGFDEETAVEIQGRAREYLEG 419
+ + ++ G +TA +I A+ +
Sbjct: 389 LTTEYLITLPGIGHKTAEKIIEVAKNSIRK 418
>gi|225849798|ref|YP_002730032.1| transcription termination factor NusA [Persephonella marina EX-H1]
gi|225646384|gb|ACO04570.1| transcription termination factor NusA [Persephonella marina EX-H1]
Length = 374
Score = 303 bits (775), Expect = 6e-80, Method: Composition-based stats.
Identities = 148/368 (40%), Positives = 221/368 (60%), Gaps = 19/368 (5%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
L + +AVA EK++ +++ + D I A + YG +++V + E ++ + V
Sbjct: 5 LKNVIEAVAKEKNVPEEIIEKALIDGITAAVKKEYGYKDNVQVIFDKEADELKVLLKKRV 64
Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
VEN ISL+ A+ DP ++G V PL + GR+A+ +AK+VI KV E++
Sbjct: 65 TPFVENPKRDISLEEAKKIDPKAEVGSYVFVPLNLEELGRIALNAAKEVITHKVARVEKN 124
Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
+ EFK+ G+I++GTV+R E G++IVDLG + V+ +E I +E R GDR+++ I
Sbjct: 125 ILFKEFKELEGKIVTGTVRRFEDGDIIVDLGRIEAVLPEEEQIKKEKYRVGDRIRALILK 184
Query: 189 VRREQRGP-------------------QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAV 229
V ++ P V+LSRTHP F+ KL +EVPEI G +++KA+
Sbjct: 185 VIKDGSYPVYERGKVKRVIKPIDRDKPLVILSRTHPNFLRKLIEIEVPEIQEGEIEIKAI 244
Query: 230 SRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN 289
+R+PG RAK+AV++ D +IDPVG VG++GSR+Q V EL EKID++ W PD A F++
Sbjct: 245 AREPGERAKVAVWTEDKNIDPVGVVVGLKGSRIQNVSAELSGEKIDVIEWDPDPAQFILR 304
Query: 290 ALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
AL P+ K L ED RIEV VPK +LSLAIG+ G N +LA +LTGW IDI++EE+
Sbjct: 305 ALSPSHPKKWRLLEDEKRIEVAVPKNELSLAIGKGGINAKLAHKLTGWHIDILSEEDFER 364
Query: 350 NRQKDFNE 357
+Q
Sbjct: 365 IQQLPRKT 372
>gi|116511573|ref|YP_808789.1| transcription elongation factor NusA [Lactococcus lactis subsp.
cremoris SK11]
gi|116107227|gb|ABJ72367.1| Transcription elongation factor [Lactococcus lactis subsp. cremoris
SK11]
Length = 382
Score = 303 bits (775), Expect = 7e-80, Method: Composition-based stats.
Identities = 133/346 (38%), Positives = 214/346 (61%), Gaps = 1/346 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + +K I ++ + + +I A + YG +++V + + G+ +++ E
Sbjct: 4 EMLNAFAMLEEQKGIKSEIAIEAIEQAITAAYKRQYGQAQNVKVIFDEKKGNFNVYSTRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISL+ A + +P +IG + P DF R A +AKQVI+QK+RE ER
Sbjct: 64 VVDEVFDSRLEISLEDAHELNPHYEIGDKIMFEEKPKDFARTAAGAAKQVIMQKMREEER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y E+ EII GTV++V+ V V+LG D ++ + + I +EN DRVK Y+
Sbjct: 124 TIIYNEYSRYKDEIIQGTVEKVDARAVYVNLGRVDALLTKKDQIPQENFHVDDRVKVYVT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
DV +G +V +SRT P + ++F E+PE+++G V++K+++RD G RAK+ V S D +
Sbjct: 184 DVVLTPKGTRVFISRTVPDMLKRMFEKEIPEVFDGTVEIKSIARDAGDRAKVIVQSHDEN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+D +G VG +GSR+Q ++ EL EK+DI+ WS D AT V NAL+PA + +V++ D G
Sbjct: 244 VDAIGTMVGAKGSRIQGIIRELAGEKMDIIEWSEDKATLVANALKPARIEQVLITAD-GS 302
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353
+V ++QLSLAIG+RGQNVRLA+ +T IDI +E +++ +
Sbjct: 303 SLAVVARDQLSLAIGKRGQNVRLAAHVTNSKIDIKAADEFNMDDYE 348
>gi|302528542|ref|ZP_07280884.1| transcription termination factor NusA [Streptomyces sp. AA4]
gi|302437437|gb|EFL09253.1| transcription termination factor NusA [Streptomyces sp. AA4]
Length = 350
Score = 303 bits (775), Expect = 7e-80, Method: Composition-based stats.
Identities = 132/370 (35%), Positives = 206/370 (55%), Gaps = 27/370 (7%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ A+ +K I D V+ + ++ A + G R++I+ +TG + +
Sbjct: 3 IAALRAIERDKDIPFDTVIEAIETALLTAYKHTEGHQPHARIDIDRKTGLVRVL------ 56
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
A ++ D P FGR+A +A+QVI+Q++R+AE ++
Sbjct: 57 --------------AHTLTSEGEVDEEWDD--TPEGFGRIAATTARQVILQRLRDAEHEK 100
Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
Y EF K GEI++G V+R N V++ +G+++GV+ + E ++ E+ G R+K++
Sbjct: 101 TYGEFSAKEGEIVAGVVQRDARANARGMVVIQVGDTEGVLPQAEQVAGESYEHGTRIKAF 160
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
++ V R RGPQ++LSR+HP + KLF +EVPEI +G V++ AV+R+PG R+K+AV S+
Sbjct: 161 VFGVSRSNRGPQIMLSRSHPNLVRKLFALEVPEIADGTVEIAAVAREPGHRSKIAVRSTI 220
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDED 304
++ GAC+G G+RV+ V++EL EKIDI+ WS D A FV NAL PA V V +DE
Sbjct: 221 PGVNAKGACIGPMGARVRNVMSELAGEKIDIIDWSDDPAKFVGNALSPAKVVSVRVVDER 280
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ + E+
Sbjct: 281 AKTARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDAAPAEPAGPGEGEQDHAGQA 340
Query: 365 AINVDEIIAH 374
A
Sbjct: 341 RPAAATGSAD 350
>gi|329117087|ref|ZP_08245804.1| transcription termination factor NusA [Streptococcus parauberis
NCFD 2020]
gi|326907492|gb|EGE54406.1| transcription termination factor NusA [Streptococcus parauberis
NCFD 2020]
Length = 395
Score = 302 bits (774), Expect = 8e-80, Method: Composition-based stats.
Identities = 131/381 (34%), Positives = 214/381 (56%), Gaps = 15/381 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + EK I++ ++ + +S++ A + YG +E N +TGD +F + E
Sbjct: 15 EMLEAFRILEEEKHINKSDIIEAVTESLKSAYKRRYGQSESCVIEFNEKTGDFQVFTVRE 74
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + +I LK A + ++G + +FGRVA QSAKQ I++K+R R
Sbjct: 75 VVEEVFDSRLEIGLKDALAISSAYELGDKIRFEESVAEFGRVAAQSAKQTIMEKMRRQMR 134
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ + E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR+ Y+Y
Sbjct: 135 EVTFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIDVYVY 194
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + +
Sbjct: 195 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 254
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG GS ++ V+++ E ID++ W D A F+ NA+ P
Sbjct: 255 VDAIGTIVGRGGSNIKKVISKFHPKRFDQKAGAEIPVEENIDVIQWVDDPAEFIYNAIAP 314
Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + +
Sbjct: 315 AEVDMVLFDEADSKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASDYERMEA 374
Query: 353 KDFNERTQFFMQAINVDEIIA 373
+ N+ T+ + I
Sbjct: 375 EQENQSTELVEETIAPTNEEE 395
>gi|269303191|gb|ACZ33291.1| transcription termination factor NusA [Chlamydophila pneumoniae
LPCoLN]
Length = 434
Score = 302 bits (774), Expect = 8e-80, Method: Composition-based stats.
Identities = 144/430 (33%), Positives = 233/430 (54%), Gaps = 9/430 (2%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
L+ I D + EK I R ++ + +++ AA+ ++I V IN TGDI +F
Sbjct: 2 NKNLVAIFDYMEKEKGIQRSTIIGAIESALKIAAKKTLRDDANISVNINSRTGDIEVFCE 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
E+VE +N + +I L AR+ DP IG + P +FGR+A +A+Q+I QK+R A
Sbjct: 62 KEIVEICQNPSKEIPLDKAREYDPDCQIGQYMDVPFVSDNFGRIAAHAARQIIGQKLRHA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
ERD Y E++ +V EI+SG VKR + N+I+DLG + ++ E + GD++ +
Sbjct: 122 ERDVIYEEYRHRVNEILSGVVKRFAKGSNLIIDLGKVEAILPTRFYPKTEKHKIGDKIYA 181
Query: 185 YIYD-VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+Y+ E G +V+LSR+H +F+ +LF EVPE+ G V++ ++R+ G R KLAV S
Sbjct: 182 LLYEVQESENGGAEVILSRSHAEFVKQLFIQEVPELEEGSVEIVKIAREAGYRTKLAVRS 241
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
SD DPVGA VGMRGSRV+ ++ EL DEKIDIV +SP S + N L P + K+ + E
Sbjct: 242 SDPKTDPVGAFVGMRGSRVKNIIRELNDEKIDIVNYSPVSTELLQNLLYPIEIQKIAILE 301
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
D I ++V + IG+RG N RL SQ+ + +++ E + + + +F
Sbjct: 302 DDKVIAIVVNDADYATVIGKRGINARLISQILDYELEVQRMSEYNKLLEIQRLQLAEFDS 361
Query: 364 QAI-------NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416
+ + +++ L G+ + + +++AS+ G E A +I + +Y
Sbjct: 362 PHLDQPLEMEGISKLVIQNLEHAGYDTIRRVLLASANDLASVPGISLELAYKILEQVSKY 421
Query: 417 LEGIDITLQK 426
E +
Sbjct: 422 GESKVDEKPE 431
>gi|24378911|ref|NP_720866.1| transcription elongation factor NusA [Streptococcus mutans UA159]
gi|290581068|ref|YP_003485460.1| putative transcription factor [Streptococcus mutans NN2025]
gi|24376794|gb|AAN58172.1|AE014888_10 putative transcription factor NusA [Streptococcus mutans UA159]
gi|254997967|dbj|BAH88568.1| putative transcription factor [Streptococcus mutans NN2025]
Length = 397
Score = 302 bits (774), Expect = 9e-80, Method: Composition-based stats.
Identities = 127/388 (32%), Positives = 213/388 (54%), Gaps = 15/388 (3%)
Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66
E+L+ + EK I++D ++ + +S++ A + YG +E + ++GD +F +
Sbjct: 3 QEMLEAFRILEEEKHINKDDIIDAVKESLKSAYKRRYGQAESAEIEFDEKSGDFKVFTVR 62
Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
EVVEEV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R
Sbjct: 63 EVVEEVFDSRLEISLKDALAISTAYELGDKIRFEESPKEFGRVAAQSAKQTIMEKMRRQM 122
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
R+ + E+K+ EI++GTV+R + + V+LG + + R + + E DR++ Y+
Sbjct: 123 REVTFNEYKEHEREIMTGTVERFDNRFIYVNLGTIEAQLSRQDQVPGETFASHDRIEVYV 182
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
Y V +G V +SR+HP+F+ ++ E+PE+++G V++ +V+R+ G R K+AV S +
Sbjct: 183 YKVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVAREAGDRTKVAVRSHNP 242
Query: 247 SIDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALR 292
++D +G VG +G+ ++ V ++ E +D++ W D A F+ NA+
Sbjct: 243 NVDAIGTIVGRKGANIKKVTSKFHPKRFDQKTGLWVPMEENVDVIEWVDDPAEFIYNAVA 302
Query: 293 PAIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351
PA V +V+ D ED V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 303 PAEVDQVLFDEEDDKHATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEEME 362
Query: 352 QKDFNERTQFFMQAINVDEIIAHLLVAE 379
+ + L E
Sbjct: 363 AEWAAQDETQEATYEEAPAEEVSELSQE 390
>gi|257463891|ref|ZP_05628277.1| transcription elongation factor NusA [Fusobacterium sp. D12]
gi|317061420|ref|ZP_07925905.1| transcription elongation factor NusA [Fusobacterium sp. D12]
gi|313687096|gb|EFS23931.1| transcription elongation factor NusA [Fusobacterium sp. D12]
Length = 353
Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats.
Identities = 131/344 (38%), Positives = 210/344 (61%), Gaps = 3/344 (0%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
M + + L+ + + EK I ++ +L + ++ A + YG ++ V I+ E GD+
Sbjct: 1 MTNKDAKAFLEALNELEKEKGIAKESLLQAVEQALLTAYKKNYGDEENVEVIIDRENGDV 60
Query: 61 SLFRLLEVVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
++ + VVEE + + +ISL+ AR +G + + F R A+Q+ KQ+I
Sbjct: 61 KVYEVKTVVEEEDLYDAALEISLEEARKISRKAKLGEEIRIEVDCESFRRNAIQNGKQII 120
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177
IQKVREAER+ Y FK + GEI++G ++R E NV ++ G + ++ E + +
Sbjct: 121 IQKVREAERENIYDRFKAQEGEILTGIIRRIDERKNVFIEFGGIETILTAGEQCISDRYK 180
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
G+R+K Y+ +V + + P++++SR H + KLF +E+PEI +G++++KAV+R+ GSRA
Sbjct: 181 VGNRIKVYLVEVEKTNKFPKIVISRRHEGLLRKLFELEIPEISSGVIEIKAVAREAGSRA 240
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV+S ++ID VGAC+G + SR++ +V EL EKIDIV+W + FV L PA V
Sbjct: 241 KVAVYSELANIDIVGACIGQKRSRIKNIVDELGGEKIDIVIWKENMEEFVSAVLSPAKVN 300
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
V L ED V+V + QLSLAIG+ GQN RLA++LTG +DI
Sbjct: 301 SVELLEDGETARVLVDESQLSLAIGKSGQNARLAAKLTGMRVDI 344
>gi|313889714|ref|ZP_07823357.1| transcription termination factor NusA [Streptococcus pseudoporcinus
SPIN 20026]
gi|313122011|gb|EFR45107.1| transcription termination factor NusA [Streptococcus pseudoporcinus
SPIN 20026]
Length = 384
Score = 301 bits (772), Expect = 1e-79, Method: Composition-based stats.
Identities = 129/373 (34%), Positives = 212/373 (56%), Gaps = 15/373 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + EK I+++ ++ + +S++ A + YG +E N +TGD +F + E
Sbjct: 4 EMLEAFRILEEEKHINKEDIIEAVTESLKSAYKRRYGQSESCVIEFNEKTGDFQVFSVRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + +ISL A + ++G + +FGRVA QSAKQ I++K+R R
Sbjct: 64 VVEEVFDSRLEISLSDALAISSAYELGDKIRFEESVAEFGRVAAQSAKQTIMEKMRRQMR 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR++ Y+Y
Sbjct: 124 EVTYNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIEVYVY 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + +
Sbjct: 184 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG GS ++ V+++ E ID++ W D A F+ NA+ P
Sbjct: 244 VDAIGTIVGRGGSNIKKVISKFHPKRYDAKTGIEIPVEENIDVIQWVDDPAEFIYNAIAP 303
Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V V+ D+ D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + +
Sbjct: 304 AEVDMVLFDDTDTKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASDYEALEA 363
Query: 353 KDFNERTQFFMQA 365
+ T +
Sbjct: 364 EQEEVNTSEEVDQ 376
>gi|110803140|ref|YP_698976.1| transcription elongation factor NusA [Clostridium perfringens
SM101]
gi|110683641|gb|ABG87011.1| N utilization substance protein A [Clostridium perfringens SM101]
Length = 366
Score = 301 bits (772), Expect = 1e-79, Method: Composition-based stats.
Identities = 143/348 (41%), Positives = 222/348 (63%), Gaps = 4/348 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDIS 61
E L + EK I + +L + D+I A + + T +++V+ + ++G+I
Sbjct: 2 NEEFLGALSEIVKEKGISVEALLETIDDAIIAAYKKNFSNSGTTAQNVKVKRDEKSGEIH 61
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
++ VVEEV + +ISL+ A+ + +V + P +FGRVA Q AKQ++IQ+
Sbjct: 62 VYAQKVVVEEVYDDVTEISLEDAKAISAIYQLDDIVEIEVTPKNFGRVAAQLAKQMVIQR 121
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
++E+ER+ Y EF +K +I+ GTV R + GNV VDLG +GV+ +E + E ++
Sbjct: 122 IKESERNVIYSEFAEKEFDILPGTVIRKDKGNVFVDLGKIEGVLGPNEQMPTEKYNFNEK 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++ Y+ +V++ +G VL SRTHP + +LF +EVPEIY GIV++K+++R+ GSR K+AV
Sbjct: 182 LQLYVVEVKKTSKGASVLCSRTHPGLVKRLFELEVPEIYEGIVEIKSIAREAGSRTKIAV 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
+S+D S+D +GACVG +G RVQ +V EL++EKIDI+ WS + ++ NAL PA V V
Sbjct: 242 YSNDESVDAMGACVGPKGVRVQNIVNELKNEKIDIIKWSNTPSEYIENALSPAKVVSVEA 301
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
DE+ +VIV QLSLAIG+ GQNVRLA++LTGW IDI ++ +
Sbjct: 302 DEETKSAKVIVDDSQLSLAIGKEGQNVRLAAKLTGWKIDIKSKSKAEE 349
>gi|227431859|ref|ZP_03913883.1| transcription termination factor NusA [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
gi|227352401|gb|EEJ42603.1| transcription termination factor NusA [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
Length = 365
Score = 301 bits (772), Expect = 1e-79, Method: Composition-based stats.
Identities = 140/345 (40%), Positives = 215/345 (62%), Gaps = 4/345 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
EL++ +A+ E+ IDR VV+ + D+++ A + Y T ++ + + G+IS+ ++
Sbjct: 4 ELVEALNALESERGIDRLVVVEALEDALKAAYKKQYNTADNVEATFDDKKGNISIKQVKH 63
Query: 68 VVEEVENYTCQI--SLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV + + +I SL A + + + G + + P DFGR+A Q+AKQVI+QK+REA
Sbjct: 64 VVLDDDLEDEEIEISLSDALAINRAYEAGDEIRFDVTPKDFGRMAAQAAKQVIVQKMREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVKS 184
R Y +F D EII+G V R + + V+L GN + V+ + + E GDR+K
Sbjct: 124 GRQAIYNKFSDYEDEIITGEVDRQDARFLYVNLPGNQEAVMAPSDQMPNERYHMGDRIKV 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ V +GPQV +SRT + +LF EVPE+Y+G V++ +++R+ G R+K+AV++
Sbjct: 184 LVNKVENNAKGPQVFVSRTAADLVKRLFEQEVPEVYDGTVEIMSIAREAGDRSKIAVYTH 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D+ +DPVGA VG RG+RVQ+VV EL E +DIV W D A ++ NAL P+ VT V+ D
Sbjct: 244 DTDLDPVGAMVGQRGARVQSVVNELAGENMDIVEWVEDEAQYIANALNPSEVTDVIFDPA 303
Query: 305 V-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
+ VIVP QLSLAIG++GQN RLA++LTG+ IDI +E E +
Sbjct: 304 NDRAVTVIVPDNQLSLAIGKKGQNARLAARLTGFKIDIKSESEAA 348
>gi|116618453|ref|YP_818824.1| transcription elongation factor [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|116097300|gb|ABJ62451.1| Transcription elongation factor [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
Length = 365
Score = 301 bits (772), Expect = 1e-79, Method: Composition-based stats.
Identities = 140/345 (40%), Positives = 216/345 (62%), Gaps = 4/345 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
EL++ +A+ E+ IDR VV+ + D+++ A + Y T ++ + + G+IS+ ++
Sbjct: 4 ELVEALNALESERGIDRLVVVEALEDALKAAYKKQYNTADNVEATFDDKKGNISIKQVKH 63
Query: 68 VVEEVENYTCQI--SLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV + + +I SL A + + + G + + P DFGR+A Q+AKQVI+QK+REA
Sbjct: 64 VVLDDDLEDEEIEISLSDALAINRAYEAGDEIRFDVTPKDFGRMAAQAAKQVIVQKMREA 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVKS 184
R Y +F D EII+G V R + + V+L GN + V+ ++ + E GDR+K
Sbjct: 124 GRQAIYNKFSDYEDEIITGEVDRQDARFLYVNLPGNQEAVMAPNDQMPNERYHMGDRIKV 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ V +GPQV +SRT + +LF EVPE+Y+G V++ +++R+ G R+K+AV++
Sbjct: 184 LVNKVENNAKGPQVFVSRTAADLVKRLFEQEVPEVYDGTVEIMSIAREAGDRSKIAVYTH 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D+ +DPVGA VG RG+RVQ+VV EL E +DIV W D A ++ NAL P+ VT V+ D
Sbjct: 244 DTDLDPVGAMVGQRGARVQSVVNELAGENMDIVEWVEDEAQYIANALNPSEVTDVIFDPA 303
Query: 305 V-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
+ VIVP QLSLAIG++GQN RLA++LTG+ IDI +E E +
Sbjct: 304 NDRAVTVIVPDNQLSLAIGKKGQNARLAARLTGFKIDIKSESEAA 348
>gi|331698436|ref|YP_004334675.1| NusA antitermination factor [Pseudonocardia dioxanivorans CB1190]
gi|326953125|gb|AEA26822.1| NusA antitermination factor [Pseudonocardia dioxanivorans CB1190]
Length = 348
Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats.
Identities = 132/347 (38%), Positives = 197/347 (56%), Gaps = 29/347 (8%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ A+ +K I D+VL + ++ A + G R++I+ +TG + +
Sbjct: 5 IAALRAIERDKDIPFDMVLEAIETALLTAYKHTDGHEPHARIDIDRKTGLVRVL------ 58
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
A++ + D P FGRVA +A+QVI+Q++R+AE +R
Sbjct: 59 --------------AQELGDDGQVAREWDD--TPEGFGRVAATTARQVIVQRLRDAEHER 102
Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN--SDGVIRRDETISRENLRPGDRVK 183
+ EF K GEII+G V+ N V+V L ++GV+ + E + E + GDR++
Sbjct: 103 TFGEFSAKEGEIITGEVQADSRANARGVVVVSLSGSQAEGVLPQTEQVPGERYQHGDRLR 162
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
Y+ V R RG Q+ LSRTHP + KLF +EVPE+ +G V++ AV+R+ G R K+AV S
Sbjct: 163 CYVLGVSRGPRGTQITLSRTHPNLVRKLFALEVPELVDGSVEIVAVAREAGHRTKIAVRS 222
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LD 302
+ ++P GAC+G G+RV+ V++EL EKIDI+ WS D ATFV NAL P+ V V +D
Sbjct: 223 TVPGVNPKGACIGPMGARVRGVMSELAGEKIDIIDWSDDPATFVGNALSPSKVVSVTVID 282
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ +
Sbjct: 283 AKTRTARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDSDPRN 329
>gi|291296311|ref|YP_003507709.1| NusA antitermination factor [Meiothermus ruber DSM 1279]
gi|290471270|gb|ADD28689.1| NusA antitermination factor [Meiothermus ruber DSM 1279]
Length = 392
Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats.
Identities = 143/378 (37%), Positives = 228/378 (60%), Gaps = 14/378 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARS----------LYGTMSDIRVEINP 55
+ + VA+E+ + + ++S ++++ A G I V ++P
Sbjct: 2 NKDFVDALSQVAHERGVTAEELISNFEEALRLAYLRQKGFRPKDVEEEGKGPIIEVHLDP 61
Query: 56 ETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAK 115
+ G + + + VVEEV++ +I L+ A+ DP +++G + P+ P +F R+AVQ AK
Sbjct: 62 QEGHLEVLEIRRVVEEVKDPDKEIDLETAKKYDPEVEVGEEMEFPVDPEEFSRIAVQIAK 121
Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRE 174
QV+ Q+++EAER R + E+KDK GE+++G+V RV+ GNV V+LG + ++ + E I E
Sbjct: 122 QVLTQRLKEAERTRVHNEYKDKEGEVVTGSVARVDNRGNVYVELGRGEALMPQKEQIPTE 181
Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234
PG R+K Y+ V+R +GP +++SR H + + L EVPEI GIV+VKAV+R+PG
Sbjct: 182 RYHPGQRIKVYLKQVQRSSKGPSLVVSRAHEELLRYLLRQEVPEIAEGIVEVKAVAREPG 241
Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294
SR+K+AV S + ++DP+GAC+G +G R+QAV EL E+IDI+ WSP+ F+ NAL PA
Sbjct: 242 SRSKVAVVSHNPNVDPIGACIGHKGQRIQAVSAELGRERIDIIQWSPNPKEFIRNALSPA 301
Query: 295 IVTKVVLDEDV---GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351
V ++ ++ R V+V K+Q SLAIG+ GQNVRLAS+LTG+ I+ EE +
Sbjct: 302 TVGEITIENSENGQNRASVVVAKDQHSLAIGKAGQNVRLASKLTGYEINFEEAEEITDLD 361
Query: 352 QKDFNERTQFFMQAINVD 369
+ ++ D
Sbjct: 362 AAILKAAERDESSRVSSD 379
>gi|289643647|ref|ZP_06475760.1| NusA antitermination factor [Frankia symbiont of Datisca glomerata]
gi|289506538|gb|EFD27524.1| NusA antitermination factor [Frankia symbiont of Datisca glomerata]
Length = 362
Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats.
Identities = 137/345 (39%), Positives = 199/345 (57%), Gaps = 28/345 (8%)
Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70
+ EK I D ++ + ++ A R G +D RV I+ +G ++++
Sbjct: 6 AALRGIEREKDIAFDTLVEAIETALLTAYRHTDGAAADARVVIDRTSGHVAVYAR----- 60
Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130
+ SL G P DFGR+A +AKQVI+Q++REA+++
Sbjct: 61 -------ETSLD-----------GMTREWEDTPADFGRIATMTAKQVIMQRLREAQQEIT 102
Query: 131 YLEFKDKVGEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
Y ++ D+ E++SG V+ E V+VDLG +GV+ E + E GDR+K Y+
Sbjct: 103 YGQYADREHEVVSGVVQHHEQRAGSKVVLVDLGTIEGVLPPAEQVPGERFEHGDRIKCYV 162
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
V R GP V LSRTHP+ + LF MEVPE+ +G V++ A++R+ G R+K+AV S+ +
Sbjct: 163 VSVTRGVHGPTVTLSRTHPELVKGLFRMEVPEVADGTVEIAAIAREAGHRSKIAVRSTVA 222
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDV 305
++P GAC+G G+RV+AV+ EL EKIDIV WS D A FV NAL PA V +V + D V
Sbjct: 223 GVNPKGACIGPMGARVRAVMAELHGEKIDIVDWSADPAAFVGNALSPARVARVEVADPAV 282
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350
V+VP QLSLAIGR GQN RLA++LTGW IDI ++ E + +
Sbjct: 283 RAARVVVPDYQLSLAIGREGQNARLAARLTGWRIDIHSDTEGAGD 327
>gi|291541940|emb|CBL15050.1| transcription termination factor NusA [Ruminococcus bromii L2-63]
Length = 386
Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats.
Identities = 131/373 (35%), Positives = 220/373 (58%), Gaps = 5/373 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+L + EK I D +L + +I A ++ YG ++ +++PE +
Sbjct: 3 NKDLFEALRTFEKEKGIPMDYMLQNIEKAISVACKNYYGGNENVVFKVDPEKNSFDAKLV 62
Query: 66 LEVVEEVENYTCQISLKVARDRDPSID--IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
VV+EV + +++++ A+ + +G + P+ P G +V SA+ VI Q +R
Sbjct: 63 KTVVDEVFDPNFEVTVEEAQQINKRKKFIVGDEIEVPIDPKHLGWTSVSSARNVIRQGIR 122
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVI--VDLGNSDGVIRRDETISRENLRPGDR 181
+ E+ + +EF+ K+GEI++ TV+R++ + + + +G S+ + + E + ++L+ GD
Sbjct: 123 QGEKGQTLIEFQSKLGEIVTATVERIDPKSGVATIKIGKSEATLPKSEQLGHDDLKEGDH 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K YI DV+ +RGP ++SRTHP + +LF EVPEIY+G+V++K++SR+ GSR K+AV
Sbjct: 183 IKVYIADVKDNERGPHAIISRTHPGLVKRLFEQEVPEIYDGVVEIKSISREAGSRTKMAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
+SS+ +D +G+C+G +G+RV +V EL EKIDIV++S D ++ AL PA V KV +
Sbjct: 243 YSSNPDVDAIGSCIGNKGARVNKIVEELGGEKIDIVLYSDDPEKYISAALSPASVCKVEI 302
Query: 302 -DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
DE+ VP QLSLAIG +GQN RLA++LTGW IDI E + D + +
Sbjct: 303 TDEETKSCRATVPDGQLSLAIGNKGQNARLAARLTGWRIDIRPESGFYGEDEDDEPKTEE 362
Query: 361 FFMQAINVDEIIA 373
+++DE
Sbjct: 363 KSEDVLDLDESTE 375
>gi|213418035|ref|ZP_03351112.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
Length = 319
Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats.
Identities = 131/336 (38%), Positives = 204/336 (60%), Gaps = 18/336 (5%)
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
DR++ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+
Sbjct: 1 DRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 60
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +
Sbjct: 61 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 120
Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
V+DED +++ V L+ AIGR GQNV LASQL+GW ++++T ++ Q + +
Sbjct: 121 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVHLASQLSGWELNVMTVDDLQAKHQAEAHAAI 180
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+ F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L
Sbjct: 181 EIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALAT 240
Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479
+ + + + +++L ++ G+D + L G+ T+EDLA +DDL
Sbjct: 241 LAQDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIE----- 295
Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ +I+ AR + W E
Sbjct: 296 ------------GLTDEKAGELIMAAR-NICWFGDE 318
>gi|296122805|ref|YP_003630583.1| transcription termination factor NusA [Planctomyces limnophilus DSM
3776]
gi|296015145|gb|ADG68384.1| transcription termination factor NusA [Planctomyces limnophilus DSM
3776]
Length = 442
Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats.
Identities = 148/431 (34%), Positives = 244/431 (56%), Gaps = 32/431 (7%)
Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
N E+L+I D++ +KSID+++V + +I AAR +G I V I+ +G +
Sbjct: 1 MNGNEVLRIVDSIHRDKSIDKEIVFEGVEQAILSAARKHFGEEEVIEVHIDRTSGQPMVK 60
Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
R+ D ++G ++ GR++ Q+AKQV+IQK+R
Sbjct: 61 ------------------TNGREIDRD-ELGDIL---------GRISAQTAKQVMIQKIR 92
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183
EAERD + E+ G+I+SGTV R E + V++G ++ ++ R E I E+ RP +R++
Sbjct: 93 EAERDTLFDEYAQLRGQIVSGTVTRNEGSAITVNIGKAEAILPRSEMIPGESHRPNERIR 152
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+ + +V++ +V+LSR HP F+ +L +E+PE+ I+++++++R+ G R K+AV
Sbjct: 153 AVVLEVKKMGPRVRVVLSRAHPDFVRRLLELEIPEVNERIIEIRSLAREAGYRTKVAVSC 212
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
+DS+IDPVGACVG+RG+R++ V EL E+I++V W+ V NA++P+ V V+L
Sbjct: 213 ADSNIDPVGACVGVRGARIRNVGEELGGERIEVVRWNDSLQVLVPNAMQPSEVEDVILCP 272
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
+GR+ V+V +QLSLAIG+RGQNVRLAS+L GW ID++T EE + +Q
Sbjct: 273 MLGRVLVLVRDDQLSLAIGKRGQNVRLASKLVGWDIDVMTREELDQQLDQAVVAYSQIP- 331
Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423
V E +A LV++GF E+L+ ++ E+ + +E A I A E I+
Sbjct: 332 ---GVSEELAEGLVSQGFLSFEDLSVIEPDELMEMGSLTQEQADVIVEYAERESERIEKE 388
Query: 424 LQKKIRELGVS 434
+
Sbjct: 389 QDLRRATEKAE 399
>gi|319947585|ref|ZP_08021815.1| transcription elongation factor NusA [Streptococcus australis ATCC
700641]
gi|319746273|gb|EFV98536.1| transcription elongation factor NusA [Streptococcus australis ATCC
700641]
Length = 381
Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats.
Identities = 131/378 (34%), Positives = 212/378 (56%), Gaps = 15/378 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + +K I ++ ++ + +S++ A R YG +E N +TGD ++ + E
Sbjct: 4 EMLDAFRILEEDKGIKKEDIIEAVTESLRSAYRRRYGQAESAAIEFNEKTGDFRVYTVRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 64 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y +K+ EI+SGTV+R + + V+LG+ + + + + I E + DR++ ++Y
Sbjct: 124 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFQSHDRIEVFVY 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + +
Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG GS ++ + ++ E ID++ W PD A F+ NA+ P
Sbjct: 244 VDAIGTIVGRGGSNIKKITSKFHPARYDQKLDRMVPTEENIDVIEWVPDPAEFIYNAIAP 303
Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V +V+ D ED V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 304 AEVDQVIFDEEDSKHALVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYEEMEA 363
Query: 353 KDFNERTQFFMQAINVDE 370
+ +VDE
Sbjct: 364 SQEPAFEEVESDLNSVDE 381
>gi|168214478|ref|ZP_02640103.1| N utilization substance protein A [Clostridium perfringens CPE str.
F4969]
gi|170714047|gb|EDT26229.1| N utilization substance protein A [Clostridium perfringens CPE str.
F4969]
Length = 366
Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats.
Identities = 143/348 (41%), Positives = 222/348 (63%), Gaps = 4/348 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDIS 61
E L + EK I + +L + D+I A + + T +++V+ + ++G+I
Sbjct: 2 NEEFLGALSEIVKEKGISVEALLETIDDAIIAAYKKNFSNSGTTAQNVKVKRDEKSGEIH 61
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
++ VVEEV + +ISL+ A+ + +V + P +FGRVA Q AKQ++IQ+
Sbjct: 62 VYAQKVVVEEVYDDVTEISLEDAKAISAIYQLDDIVEIEVTPKNFGRVAAQLAKQMVIQR 121
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
++E+ER+ Y EF +K +I+ GTV R + GNV VDLG +GV+ +E + E ++
Sbjct: 122 IKESERNVIYSEFAEKEFDILPGTVIRKDKGNVFVDLGKIEGVLGPNEQMPTEKYNFNEK 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++ Y+ +V++ +G VL SRTHP + +LF +EVPEIY GIV++K+++R+ GSR K+AV
Sbjct: 182 LQLYVVEVKKTSKGASVLCSRTHPGLVKRLFELEVPEIYEGIVEIKSIAREAGSRTKIAV 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
+S+D S+D +GACVG +G RVQ +V EL++EKIDI+ WS + ++ NAL PA V V
Sbjct: 242 YSNDESVDAMGACVGPKGVRVQNIVNELKNEKIDIIKWSSTPSEYIENALSPAKVISVEA 301
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
DE+ +VIV QLSLAIG+ GQNVRLA++LTGW IDI ++ +
Sbjct: 302 DEETKSAKVIVDDSQLSLAIGKEGQNVRLAAKLTGWKIDIKSKSKAEE 349
>gi|320547937|ref|ZP_08042220.1| transcription termination factor NusA [Streptococcus equinus ATCC
9812]
gi|320447477|gb|EFW88237.1| transcription termination factor NusA [Streptococcus equinus ATCC
9812]
Length = 389
Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats.
Identities = 129/365 (35%), Positives = 209/365 (57%), Gaps = 15/365 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + EK I++D ++ + +S++ A + YG +E + + GD ++ + E
Sbjct: 7 EMLEAFRILEEEKHINKDDIIDAVKESLKSAYKRRYGQSESCVIEFDDKKGDFKVYTVRE 66
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + +ISL A + ++G + +FGRVA QSAKQ I++K+R R
Sbjct: 67 VVEEVFDSRLEISLSDALKISSAYELGDKIRFEESVAEFGRVAAQSAKQTIMEKMRRQIR 126
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y E+K GEI++GTV+R + + V+LG+ + + + I E + DR++ Y+Y
Sbjct: 127 EVTYNEYKQHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETWKSHDRIEVYVY 186
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +G V +SR+HPQF+ ++ E+PE+++G V++ +VSR+ G R K+AV S + +
Sbjct: 187 KVENNPKGVNVFVSRSHPQFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 246
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG GS ++ V+++ E ID++ W D A F+ NA+ P
Sbjct: 247 VDAIGTIVGRGGSNIKKVISKFHPKRYDAKAGVEVPVEENIDVIQWVEDPAEFIYNAIAP 306
Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V V+ D ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 307 AEVDMVLFDEEDSKRATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYEALEA 366
Query: 353 KDFNE 357
+ +
Sbjct: 367 ERAEQ 371
>gi|262066535|ref|ZP_06026147.1| transcription termination factor NusA [Fusobacterium periodonticum
ATCC 33693]
gi|291379769|gb|EFE87287.1| transcription termination factor NusA [Fusobacterium periodonticum
ATCC 33693]
Length = 353
Score = 300 bits (769), Expect = 3e-79, Method: Composition-based stats.
Identities = 127/354 (35%), Positives = 219/354 (61%), Gaps = 4/354 (1%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
M + + L+ D + EK I ++ VL + ++ A + YG ++ V ++ E+G+I
Sbjct: 1 MKAKDSKIFLEALDELEKEKGISKESVLEAIELALLAAYKKNYGEDENVEVIVDRESGEI 60
Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+ VV+ ++ + +ISL+ A++ IG V+ + +F R AVQ+ KQ++
Sbjct: 61 KVLASKTVVDADDLLDPNEEISLEDAKEIKKRAKIGDVLKFEVSCDNFRRNAVQNGKQIV 120
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLR 177
IQKVREAER+ Y +FK++ +I++G ++R++ N+ +++ + ++ E + R
Sbjct: 121 IQKVREAEREHIYEKFKERENDIVTGIIRRIDNKKNIFIEIDGIELILPPAEQSYSDIYR 180
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
G+R+K ++Y+V + + P++L+SR + + KLF +E+PEI GI+++K+V+R+ GSRA
Sbjct: 181 VGERIKVFVYNVEKTNKFPKILISRKNEGLLKKLFEIEIPEISAGIIEIKSVAREAGSRA 240
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV+S +ID VGAC+G +G+R++ +V EL E+IDIV W FV L PA+V+
Sbjct: 241 KVAVYSQVPNIDTVGACIGQKGTRIKNIVDELNGERIDIVEWKESMEQFVSAVLSPAVVS 300
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351
V + ED G +V+V QLSLAIG+ GQN RLA++LTG +DI E++ +
Sbjct: 301 SVEILED-GTAKVLVEPSQLSLAIGKNGQNARLAARLTGTRVDIKVLEKEEDDE 353
>gi|306820436|ref|ZP_07454072.1| transcription termination factor NusA [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304551511|gb|EFM39466.1| transcription termination factor NusA [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 359
Score = 300 bits (769), Expect = 3e-79, Method: Composition-based stats.
Identities = 134/354 (37%), Positives = 220/354 (62%), Gaps = 12/354 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E ++ D + +K I ++++L + +I A + YG+ +++ V I+ + GDI +
Sbjct: 2 NTEFIRALDQLEKQKGIKKEILLDAINQAILNAYKKNYGSNAEVEVSIDTKKGDIKIINP 61
Query: 66 LEVVEE--VENYTCQISLKVA-RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+ +V++ V+ +++++ A + G +V + + P DFGR+A Q+A+Q+++QK+
Sbjct: 62 ITIVDDDKVDILDNEMTVEYANQFFGKQYKEGDIVREEVTPKDFGRIATQAARQIVVQKI 121
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG---------NSDGVIRRDETISR 173
+EAE+D QY EFK K EII+G V R+ V D+ N++GV+ E +S
Sbjct: 122 KEAEKDIQYTEFKKKETEIITGMVSRISKSTVYADISILGENDIMINAEGVLPNGEQMSG 181
Query: 174 ENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDP 233
+N G +K YI +V+R Q++LSR+HP + +LF MEVPEI++G V++ ++SR+
Sbjct: 182 DNYELGQNMKFYILEVKRTNNKTQIVLSRSHPGLVKRLFEMEVPEIFDGTVEIISISREA 241
Query: 234 GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP 293
GSR K+AV ++ +DP+GACVG RG RV+ + E+ EKIDI+ ++ D A ++ +L P
Sbjct: 242 GSRTKMAVKTNMQDVDPIGACVGTRGQRVKNITDEINGEKIDIIEYNDDLAEYITASLSP 301
Query: 294 AIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347
A V V +DE+ +VIVP ++LSLAIG+ GQN RLA++LT W IDI E E
Sbjct: 302 AKVVSVEIDEEEKIAKVIVPDDKLSLAIGKEGQNARLAAKLTNWKIDIKCESEM 355
>gi|18310671|ref|NP_562605.1| transcription elongation factor NusA [Clostridium perfringens str.
13]
gi|110800366|ref|YP_696376.1| transcription elongation factor NusA [Clostridium perfringens ATCC
13124]
gi|168211423|ref|ZP_02637048.1| N utilization substance protein A [Clostridium perfringens B str.
ATCC 3626]
gi|168216976|ref|ZP_02642601.1| N utilization substance protein A [Clostridium perfringens NCTC
8239]
gi|169342667|ref|ZP_02863708.1| N utilization substance protein A [Clostridium perfringens C str.
JGS1495]
gi|18145352|dbj|BAB81395.1| probable transcriptional terminator [Clostridium perfringens str.
13]
gi|110675013|gb|ABG84000.1| N utilization substance protein A [Clostridium perfringens ATCC
13124]
gi|169299173|gb|EDS81243.1| N utilization substance protein A [Clostridium perfringens C str.
JGS1495]
gi|170710583|gb|EDT22765.1| N utilization substance protein A [Clostridium perfringens B str.
ATCC 3626]
gi|182380937|gb|EDT78416.1| N utilization substance protein A [Clostridium perfringens NCTC
8239]
Length = 366
Score = 300 bits (769), Expect = 3e-79, Method: Composition-based stats.
Identities = 143/348 (41%), Positives = 222/348 (63%), Gaps = 4/348 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDIS 61
E L + EK I + +L + D+I A + + T +++V+ + ++G+I
Sbjct: 2 NEEFLGALSEIVKEKGISVEALLETIDDAIIAAYKKNFSNSGTTAQNVKVKRDEKSGEIH 61
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
++ VVEEV + +ISL+ A+ + +V + P +FGRVA Q AKQ++IQ+
Sbjct: 62 VYAQKVVVEEVYDDVTEISLEDAKAISAIYQLDDIVEIEVTPKNFGRVAAQLAKQMVIQR 121
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
++E+ER+ Y EF +K +I+ GTV R + GNV VDLG +GV+ +E + E ++
Sbjct: 122 IKESERNVIYSEFAEKEFDILPGTVIRKDKGNVFVDLGKIEGVLGPNEQMPTEKYNFNEK 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++ Y+ +V++ +G VL SRTHP + +LF +EVPEIY GIV++K+++R+ GSR K+AV
Sbjct: 182 LQLYVVEVKKTSKGASVLCSRTHPGLVKRLFELEVPEIYEGIVEIKSIAREAGSRTKIAV 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
+S+D S+D +GACVG +G RVQ +V EL++EKIDI+ WS + ++ NAL PA V V
Sbjct: 242 YSNDESVDAMGACVGPKGVRVQNIVNELKNEKIDIIKWSNTPSEYIENALSPAKVISVEA 301
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
DE+ +VIV QLSLAIG+ GQNVRLA++LTGW IDI ++ +
Sbjct: 302 DEETKSAKVIVDDSQLSLAIGKEGQNVRLAAKLTGWKIDIKSKSKAEE 349
>gi|317133695|ref|YP_004093009.1| NusA antitermination factor [Ethanoligenens harbinense YUAN-3]
gi|315471674|gb|ADU28278.1| NusA antitermination factor [Ethanoligenens harbinense YUAN-3]
Length = 370
Score = 300 bits (768), Expect = 4e-79, Method: Composition-based stats.
Identities = 138/367 (37%), Positives = 207/367 (56%), Gaps = 2/367 (0%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E +A+ EK I + +A++I A + Y T + VE++P+ +
Sbjct: 2 NAEFFDALEALEKEKGIPEGHLAEKIANAITIAVKHNYKTGDNTIVELDPQKRIFRVALR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
V E VEN +I L A+ DP + IG V L FGR+A Q+AK VI Q +RE
Sbjct: 62 KTVSETVENPQMEIYLDEAKAIDPRVTIGDTVDIELDTRKFGRIAAQTAKHVIRQGIREV 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEY--GNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183
ER+ E + E+++ + R++ G+ +D+G ++ V+ +E I E LR G VK
Sbjct: 122 EREIIKDESMSRQHEMVTAGISRIDSVTGSAYLDIGRAEAVMPANEQIPGEQLREGQMVK 181
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
Y+ +V+ ++G + L+SRTHP + +LF +EVPEIY+G V++ ++R+PGSR K+AV S
Sbjct: 182 VYVVEVKNGEKGVRTLVSRTHPGMIRRLFELEVPEIYDGTVEIMGIAREPGSRTKVAVAS 241
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
+ +D +G+C+G +G RV +V EL EKID++ ++ D ++ AL PA V +V DE
Sbjct: 242 KNEDVDAIGSCIGPKGGRVGNIVEELHGEKIDLIPYAQDIGQYIAAALAPAAVVEVTTDE 301
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
R VIVP +QLSLAIG RGQNVRLA++LTGW IDI E + Q F
Sbjct: 302 KERRARVIVPDDQLSLAIGNRGQNVRLAAKLTGWRIDIRPESGADEDPQPRQTNMAAAFE 361
Query: 364 QAINVDE 370
A +
Sbjct: 362 AAETEPD 368
>gi|212696551|ref|ZP_03304679.1| hypothetical protein ANHYDRO_01089 [Anaerococcus hydrogenalis DSM
7454]
gi|212676487|gb|EEB36094.1| hypothetical protein ANHYDRO_01089 [Anaerococcus hydrogenalis DSM
7454]
Length = 410
Score = 300 bits (768), Expect = 4e-79, Method: Composition-based stats.
Identities = 144/410 (35%), Positives = 243/410 (59%), Gaps = 1/410 (0%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E + + + K++D+ ++L + ++ K+ + Y ++ V I+ ETG+I ++ L
Sbjct: 2 NKEFIIALEELEKSKNVDKKIILEALEKALVKSYQKNYENNENVDVNIDDETGEIEVYSL 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV+EV + +IS AR+ D +D+G + + P +FGRVA Q+A+ +++QK+R+A
Sbjct: 62 KNVVDEVNDPIAEISKTKAREIDSKLDLGDICRVKIAPKNFGRVAAQTARNIVLQKIRDA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
+RD Y E+ D+ EII+G V+R + NV ++L +G+I E + E R+K
Sbjct: 122 QRDSVYSEYLDRANEIITGVVQREDKYNVYINLDKIEGIIPLKEQVENEKYIANQRIKVL 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I DV+ + PQ++LSR +V+LF +EVPEI NGI+++ + R+ GSR K+AVFS+D
Sbjct: 182 IKDVKNTTKEPQIILSRKDKDLVVRLFELEVPEITNGIIEIYGIDREAGSRTKIAVFSND 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
ID +GAC+G +GSRV ++V EL+ EKIDI+ + D TF+ N+L PA + +V +++
Sbjct: 242 PEIDSIGACIGFKGSRVNSIVEELQGEKIDIINYDKDIKTFIKNSLSPAEINEVYINDMK 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
+ V+V ++QLSLAIG+ GQN RLA++LTGW IDI ++EE Q++ +E +
Sbjct: 302 KQSLVVVREDQLSLAIGKEGQNARLAARLTGWKIDIKSQEEFDKLDQEEIDEILGLNEEE 361
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415
+ E I + VE+ +I ++ ++ E ++ E
Sbjct: 362 DEIVENIDGEI-ENSLDQVEDETDFIEDDIENLSEDLDQIIKEDIEKSEE 410
>gi|15618236|ref|NP_224521.1| transcription elongation factor NusA [Chlamydophila pneumoniae
CWL029]
gi|15835851|ref|NP_300375.1| transcription elongation factor NusA [Chlamydophila pneumoniae
J138]
gi|16752722|ref|NP_444989.1| transcription elongation factor NusA [Chlamydophila pneumoniae
AR39]
gi|33241661|ref|NP_876602.1| transcription elongation factor NusA [Chlamydophila pneumoniae
TW-183]
gi|4376593|gb|AAD18465.1| N Utilization Protein A [Chlamydophila pneumoniae CWL029]
gi|7189363|gb|AAF38280.1| N utilization substance protein A [Chlamydophila pneumoniae AR39]
gi|8978690|dbj|BAA98526.1| N utilization protein A [Chlamydophila pneumoniae J138]
gi|33236170|gb|AAP98259.1| transcription termination-antitermination factor [Chlamydophila
pneumoniae TW-183]
Length = 434
Score = 300 bits (768), Expect = 4e-79, Method: Composition-based stats.
Identities = 142/430 (33%), Positives = 231/430 (53%), Gaps = 9/430 (2%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
L+ I D + EK I R ++ + +++ AA+ ++I V IN TGDI +F
Sbjct: 2 NKNLVAIFDYMEKEKGIQRSTIIGAIESALKIAAKKTLRDDANISVNINSRTGDIEVFCE 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
E+VE +N + +I L AR+ DP IG + P +FGR+A +A+Q+I QK+R A
Sbjct: 62 KEIVEICQNPSKEIPLDKAREYDPDCQIGQYMDVPFVSDNFGRIAAHAARQIIGQKLRHA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
ERD Y E++ +V E +SG VKR + N+I+DLG + ++ E + GD++ +
Sbjct: 122 ERDVIYEEYRHRVNETLSGVVKRFAKGSNLIIDLGKVEAILPTRFYPKTEKHKIGDKIYA 181
Query: 185 YIYD-VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+Y+ E G +V+LSR+H +F+ +LF EVPE+ G V++ ++R+ G R KLAV S
Sbjct: 182 LLYEVQESENGGAEVILSRSHAEFVKQLFIQEVPELEEGSVEIVKIAREAGYRTKLAVRS 241
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
SD DPVGA VGMRGSRV+ ++ EL DEKIDIV +SP S + N L P + K+ + E
Sbjct: 242 SDPKTDPVGAFVGMRGSRVKNIIRELNDEKIDIVNYSPVSTELLQNLLYPIEIQKIAILE 301
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
D I ++V + IG+RG N RL S + + +++ E + + + +F
Sbjct: 302 DDKVIAIVVNDADYATVIGKRGINARLISHILDYELEVQRMSEYNKLLEIQRLQLAEFDS 361
Query: 364 QAI-------NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416
+ + +++ L G+ + + +++AS+ G E A +I + +Y
Sbjct: 362 PHLDQPLEMEGISKLVIQNLEHAGYDTIRRVLLASANDLASVPGISLELAYKILEQVSKY 421
Query: 417 LEGIDITLQK 426
E +
Sbjct: 422 GESKVDEKPE 431
>gi|307718805|ref|YP_003874337.1| hypothetical protein STHERM_c11190 [Spirochaeta thermophila DSM
6192]
gi|306532530|gb|ADN02064.1| hypothetical protein STHERM_c11190 [Spirochaeta thermophila DSM
6192]
Length = 488
Score = 300 bits (768), Expect = 4e-79, Method: Composition-based stats.
Identities = 147/439 (33%), Positives = 235/439 (53%), Gaps = 19/439 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
+L + + E+ I ++V + D + A + +GT + VE + + +++L+ +
Sbjct: 4 DLKEAIQMLVQERGIPEELVQKTIEDFLLAAYKKRFGTAENAHVEFSEDGTEVTLYAKKQ 63
Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV E+ E+ QI L AR P + G + + P F R AVQ AKQ Q+++E
Sbjct: 64 VVADEDFEDEVLQIPLSEARKLAPEAEPGDELLMEVDPKSFDRGAVQVAKQRAQQELKEI 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
+RD Y EFKDKVGE+I G +R GN+ VDLG +G++ R RE RP DR+K+
Sbjct: 124 QRDTLYSEFKDKVGELIIGYYQRERNGNIYVDLGKIEGILPRKYQSPREVYRPNDRIKAL 183
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
IY+V + G QV+LSRTH +F+ K+ +EVPEIY+ V++ + R+PG R K+AV+S
Sbjct: 184 IYEVNKTPSGLQVILSRTHTEFVRKVLELEVPEIYDKTVEIFKIVREPGYRTKIAVYSRK 243
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304
+DPVGACVG++G R+QA+V EL E++D++ + PD F+ N+L PA V +V++ D +
Sbjct: 244 EGVDPVGACVGVKGVRIQALVNELEGERVDVIRYDPDPVAFIKNSLSPAEVEQVIILDRN 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN-------------- 350
+V QLSLAIG++G NVRLA++L W ID+ T ++
Sbjct: 304 KKHALAVVKDNQLSLAIGKQGLNVRLANRLVDWNIDVKTAKQVEEMGIGKEAMEAVSAVF 363
Query: 351 -RQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISE-IASIEGFDEETAVE 408
+ E + + I +L +G+ ++E+L + I EE
Sbjct: 364 SDLDEQVEEITRIEELPGLPPHIVEILSRQGYEEIEDLVFAYQDNGLEHIPELTEEDRQL 423
Query: 409 IQGRAREYLEGIDITLQKK 427
I + +E ++ +
Sbjct: 424 IGKILEDAVEIVEEEETAQ 442
>gi|320108355|ref|YP_004183945.1| NusA antitermination factor [Terriglobus saanensis SP1PR4]
gi|319926876|gb|ADV83951.1| NusA antitermination factor [Terriglobus saanensis SP1PR4]
Length = 562
Score = 300 bits (768), Expect = 4e-79, Method: Composition-based stats.
Identities = 165/417 (39%), Positives = 242/417 (58%), Gaps = 8/417 (1%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
L Q + ++ +K ID +V+ + D+I A R Y T ++R E + E+G+I + V
Sbjct: 5 LYQAIELMSRDKGIDPQIVVGAVEDAIALATRKFYKTQENMRGEFDKESGEIRAYVYKTV 64
Query: 69 VE---EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VE +VE+ Q++L A++ +++G + GR+A Q AKQVI QKVREA
Sbjct: 65 VEGAEQVEDAENQLTLDQAKELAGEVEVGAELRFYKDTSPLGRIAAQMAKQVIFQKVREA 124
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ERD + E+ +VGEI++ TVKRVE +VIVDL ++ + + E E G+R++
Sbjct: 125 ERDTVFNEYNHRVGEILNATVKRVEPMDVIVDLDKAEARMPKREQSRLEQFAVGERIRVA 184
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ V R +GPQV++SR P + LF EVPEIY+G V ++A++R+ G R K+AV S D
Sbjct: 185 LIRVDRAAKGPQVIVSRAAPSLVQNLFQSEVPEIYDGTVMIRAIAREAGERTKIAVVSRD 244
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304
+DPVGACVGM+G RVQ+++ ELR EKIDI+ +S + TF AL+PA V +V + D
Sbjct: 245 KDVDPVGACVGMKGMRVQSIIRELRGEKIDIIEFSEEITTFAEKALQPAKVARVSITDLA 304
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE----EEDSINRQKDFNERTQ 360
+IEVIV QLSLAIG++GQNVRLA++L GW IDI +E +E
Sbjct: 305 EKQIEVIVDDTQLSLAIGKKGQNVRLAAKLLGWKIDIKSEEEKRQEVEQQMSAMQGAPQT 364
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
Q + E + L+A G VE LA + E+ + G E++ +I R Y
Sbjct: 365 PIEQVTELGESVLEKLIAAGITTVESLADMTAEELEEVPGIGEKSVEKITVAVRHYF 421
>gi|315185930|gb|EFU19694.1| transcription termination factor NusA [Spirochaeta thermophila DSM
6578]
Length = 488
Score = 300 bits (768), Expect = 4e-79, Method: Composition-based stats.
Identities = 147/439 (33%), Positives = 235/439 (53%), Gaps = 19/439 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
+L + + E+ I ++V + D + A + +GT + VE + + +++L+ +
Sbjct: 4 DLKEAIQMLVQERGIPEELVQKTIEDFLLAAYKKRFGTAENAHVEFSEDGTEVTLYAKKQ 63
Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV E+ E+ QI L AR P + G + + P F R AVQ AKQ Q+++E
Sbjct: 64 VVADEDFEDEVLQIPLSEARKLAPEAEPGDELLMEVDPKSFDRGAVQVAKQRAQQELKEI 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
+RD Y EFKDKVGE+I G +R GN+ VDLG +G++ R RE RP DR+K+
Sbjct: 124 QRDTLYSEFKDKVGELIIGYYQRERNGNIYVDLGKIEGILPRKYQSPREVYRPNDRIKAL 183
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
IY+V + G QV+LSRTH +F+ K+ +EVPEIY+ V++ + R+PG R K+AV+S
Sbjct: 184 IYEVNKTPSGLQVILSRTHTEFVRKILELEVPEIYDKTVEIFKIVREPGYRTKIAVYSRK 243
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304
+DPVGACVG++G R+QA+V EL E++D++ + PD F+ N+L PA V +V++ D +
Sbjct: 244 EGVDPVGACVGVKGVRIQALVNELEGERVDVIRYDPDPVAFIKNSLSPAEVEQVIILDRN 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN-------------- 350
+V QLSLAIG++G NVRLA++L W ID+ T ++
Sbjct: 304 KKHALAVVKDNQLSLAIGKQGLNVRLANRLVDWNIDVKTAKQVEEMGIGKEAMEAVSAVF 363
Query: 351 -RQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISE-IASIEGFDEETAVE 408
+ E + + I +L +G+ ++E+L + I EE
Sbjct: 364 SDLDEQVEEITRIEELPGLPPHIVEILSRQGYEEIEDLVFAYQDNGLEHIPELTEEDRQL 423
Query: 409 IQGRAREYLEGIDITLQKK 427
I + +E ++ +
Sbjct: 424 IGKILEDAVEIVEEEETAQ 442
>gi|294783786|ref|ZP_06749110.1| transcription termination factor NusA [Fusobacterium sp. 1_1_41FAA]
gi|294480664|gb|EFG28441.1| transcription termination factor NusA [Fusobacterium sp. 1_1_41FAA]
Length = 353
Score = 300 bits (768), Expect = 5e-79, Method: Composition-based stats.
Identities = 128/354 (36%), Positives = 220/354 (62%), Gaps = 4/354 (1%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
M + + L+ D + EK I ++ VL + ++ A + YG ++ V ++ E+G+I
Sbjct: 1 MKAKDSKIFLEALDELEKEKGISKESVLEAIELALLAAYKKNYGEDENVEVIVDRESGEI 60
Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+ VV+ ++ + +ISL+ A++ + IG V+ + +F R AVQ+ KQ++
Sbjct: 61 KVLASKTVVDADDLLDPNEEISLEDAKEIKKRVKIGDVLKFEVSCDNFRRNAVQNGKQIV 120
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLR 177
IQKVREAER+ Y +FK++ +I+SG ++R++ N+ +++ + ++ E + R
Sbjct: 121 IQKVREAEREHIYEKFKERENDIVSGIIRRIDNKKNIFIEIDGIELILPPAEQSYSDIYR 180
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
G+R+K ++Y+V + + P++L+SR + + KLF +E+PEI GI+++K+V+R+ GSRA
Sbjct: 181 VGERIKVFVYNVEKTNKFPKILISRKNEGLLKKLFEIEIPEISAGIIEIKSVAREAGSRA 240
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV+S +ID VGAC+G +G+R++ +V EL E+IDIV W FV L PA+V+
Sbjct: 241 KVAVYSQVPNIDTVGACIGQKGTRIKNIVDELNGERIDIVEWKESMEQFVSAVLSPAVVS 300
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351
V + ED G +V+V QLSLAIG+ GQN RLA++LTG +DI E++ +
Sbjct: 301 SVEILED-GTAKVLVEPSQLSLAIGKNGQNARLAARLTGTRVDIKVLEKEEDDE 353
>gi|320449995|ref|YP_004202091.1| transcription termination factor NusA [Thermus scotoductus SA-01]
gi|320150164|gb|ADW21542.1| transcription termination factor NusA [Thermus scotoductus SA-01]
Length = 387
Score = 300 bits (768), Expect = 5e-79, Method: Composition-based stats.
Identities = 136/379 (35%), Positives = 219/379 (57%), Gaps = 11/379 (2%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----------GTMSDIRVEINP 55
E + +A E+ + + VL ++++KA G ++ V I+P
Sbjct: 2 NREFIDAMQQLALERGVTTEEVLEAFKEALRKAYIKRQKGYRKEEIDAGKGPEVDVYIDP 61
Query: 56 ETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAK 115
+TG I + + VVE+VE+ +I+L A DP + +G + P+ P R+A+Q +
Sbjct: 62 QTGRIEMVEVRRVVEKVEDPDKEIALSEALQYDPEVQVGDEMEFPIDPEGLSRMAIQDLR 121
Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRE 174
Q++ Q+++E+ER+R Y E+KDK G++++G V RV+ GNV V+LG + + + E I E
Sbjct: 122 QILTQRLKESERNRIYNEYKDKEGQVLTGVVTRVDNRGNVFVELGRGEAYLPKSEQIPTE 181
Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234
PG R+K Y+ V R +GP +++SR H + + L EVPEI GIV++KA++R+PG
Sbjct: 182 RYYPGQRLKVYLKKVDRSAKGPSLIVSRAHEKLLEHLLKQEVPEIAEGIVEIKAIAREPG 241
Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294
R+K+AV + + ++DP+GAC+G +G R+QAV EL EK+DI++W+ D F+ NAL PA
Sbjct: 242 RRSKVAVMTHNPNVDPIGACIGHKGQRIQAVSAELGREKVDIILWAKDPKEFIRNALSPA 301
Query: 295 IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354
V + L+ D + V V K+Q SLAIG GQNVRLAS+LTG+ I E ++
Sbjct: 302 QVGSIELEPDGQKARVKVTKDQHSLAIGTGGQNVRLASKLTGYEIHFEEAEISDLDEAIR 361
Query: 355 FNERTQFFMQAINVDEIIA 373
+ + + +E
Sbjct: 362 KAAKEEAETTSRAKEEFEK 380
>gi|227529106|ref|ZP_03959155.1| transcription termination factor NusA [Lactobacillus vaginalis ATCC
49540]
gi|227350950|gb|EEJ41241.1| transcription termination factor NusA [Lactobacillus vaginalis ATCC
49540]
Length = 410
Score = 299 bits (767), Expect = 5e-79, Method: Composition-based stats.
Identities = 135/394 (34%), Positives = 211/394 (53%), Gaps = 48/394 (12%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E++ D + EK I +++V+ + +++ A + YG ++ V+ + TG+I ++ +
Sbjct: 7 NTEMIAALDYLEKEKGIKKEIVIEALEQALELAYKQNYG-EKNVEVDFDGVTGNIKVYAV 65
Query: 66 LEVVEEV----ENYTCQISLKVARDR--DPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119
+ + E+ +SL AR D+G + + + P DFGR+A Q+AKQV++
Sbjct: 66 KTITDNEDLVEEDDNEYMSLADARKLPHGQGYDVGDEIREEVTPRDFGRIAAQTAKQVVM 125
Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRP 178
Q++RE ER Y ++K EII+G V R + VDLG +G + + + E+
Sbjct: 126 QRLREEERKIIYNKYKTYENEIITGEVSREDKRFTWVDLGDGVEGAMGYRDKMPNEHYHI 185
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
DR++ Y+ V ++ GPQ+ +SRT P+ + +LF EVPEI +G V ++ ++R+ G RAK
Sbjct: 186 HDRIQVYVSKVNDDRHGPQIFVSRTAPELLKRLFEREVPEIKDGTVLIENIAREAGDRAK 245
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV+S+D ++DPVG CVG RGSRVQA+V EL E +DIV + D A F+ NAL PA V
Sbjct: 246 VAVYSNDPNVDPVGTCVGPRGSRVQAIVNELDGENMDIVEYVKDPAQFIANALNPAEVLD 305
Query: 299 VVLDE----------------------------------------DVGRIEVIVPKEQLS 318
V+ +E + V+VP QLS
Sbjct: 306 VIFNEPEAPVTEEQPEENSTDDSVTETSDTSTEAESTEEEPVATTEERSCTVVVPDSQLS 365
Query: 319 LAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
LAIG+RGQN RLA++LT + IDI E N
Sbjct: 366 LAIGKRGQNARLAARLTKYKIDIKPASEMEDNTD 399
>gi|167751796|ref|ZP_02423923.1| hypothetical protein ALIPUT_00037 [Alistipes putredinis DSM 17216]
gi|167660037|gb|EDS04167.1| hypothetical protein ALIPUT_00037 [Alistipes putredinis DSM 17216]
Length = 410
Score = 299 bits (767), Expect = 5e-79, Method: Composition-based stats.
Identities = 140/419 (33%), Positives = 232/419 (55%), Gaps = 12/419 (2%)
Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
+ L L+ K+ID+ ++ V+ D + A + + T + V INPE GD+ ++
Sbjct: 1 MDNLNLISNFAEFKELKNIDKATMIGVLEDVFRHALQKQFETDENFDVIINPEKGDLEIW 60
Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
R VVE+ VEN QI++ + DP+ ++G DP+ FGR AV S +Q + +
Sbjct: 61 RNRTVVEDGAVENPNMQIAVSEVKAIDPTYEVGDEYVDPIKLESFGRRAVLSLRQNLASR 120
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNV-IVDLGNSDGVIRRDETISRENLRPGD 180
+ + E+ Y ++ +KVGEII+G V +V V I+D ++ ++ + E I + R GD
Sbjct: 121 ILDLEKANLYEKYSEKVGEIITGEVYQVWKKEVLILDDEGNELILPKTEQIPNDYYRKGD 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
+K+ + V P+++LSRT QF+ +LF EVPEI++G++ +K + R PG RAK+A
Sbjct: 181 TIKAIVKSVEMNNNQPRIILSRTANQFLERLFEQEVPEIFDGLITLKKIVRIPGERAKVA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S D IDPVGACVGM+GSR+ ++V ELR+E ID+V ++ + + AL PA ++ +
Sbjct: 241 VESYDERIDPVGACVGMKGSRIYSIVKELRNENIDVVNYTTNPQLMIQRALNPAKISSIT 300
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DE+ V + +Q+SLAIG+ G N+RL+ LTG+ ID+ E E+ +F +
Sbjct: 301 IDEEKKTASVYLKPDQVSLAIGKGGLNIRLSKMLTGYDIDVYREIEEEDVALTEFAD--- 357
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+D + L A G + + + + EIA+ + E A ++ + E
Sbjct: 358 ------EIDGWVIDALKACGCDTAKSVLELPVEEIAARADLELEQAQKVVEILKAEFEE 410
>gi|182626384|ref|ZP_02954138.1| N utilization substance protein A [Clostridium perfringens D str.
JGS1721]
gi|177908335|gb|EDT70883.1| N utilization substance protein A [Clostridium perfringens D str.
JGS1721]
Length = 366
Score = 299 bits (767), Expect = 5e-79, Method: Composition-based stats.
Identities = 142/348 (40%), Positives = 221/348 (63%), Gaps = 4/348 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDIS 61
E L + EK I + +L + D+I A + + T +++V+ + ++G+I
Sbjct: 2 NEEFLGALSEIVKEKGISVEALLETIDDAIIAAYKKNFSNSGTTAQNVKVKRDEKSGEIH 61
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
++ VVEEV + +ISL+ A+ + +V + P +FGRVA Q AKQ++IQ+
Sbjct: 62 VYAQKVVVEEVYDDVTEISLEDAKAISAIYQLDDIVEIEVTPKNFGRVAAQLAKQMVIQR 121
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
++E+ER+ Y EF +K +I+ TV R + GNV VDLG +GV+ +E + E ++
Sbjct: 122 IKESERNVIYSEFAEKEFDILPSTVIRKDKGNVFVDLGKIEGVLGPNEQMPTEKYNFNEK 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++ Y+ +V++ +G VL SRTHP + +LF +EVPEIY GIV++K+++R+ GSR K+AV
Sbjct: 182 LQLYVVEVKKTSKGASVLCSRTHPGLVKRLFELEVPEIYEGIVEIKSIAREAGSRTKIAV 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
+S+D S+D +GACVG +G RVQ +V EL++EKIDI+ WS + ++ NAL PA V V
Sbjct: 242 YSNDESVDAMGACVGPKGVRVQNIVNELKNEKIDIIKWSNTPSEYIENALSPAKVISVEA 301
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
DE+ +VIV QLSLAIG+ GQNVRLA++LTGW IDI ++ +
Sbjct: 302 DEETKSAKVIVDDSQLSLAIGKEGQNVRLAAKLTGWKIDIKSKSKAEE 349
>gi|312867863|ref|ZP_07728068.1| transcription termination factor NusA [Streptococcus parasanguinis
F0405]
gi|311096618|gb|EFQ54857.1| transcription termination factor NusA [Streptococcus parasanguinis
F0405]
Length = 380
Score = 299 bits (767), Expect = 5e-79, Method: Composition-based stats.
Identities = 130/377 (34%), Positives = 212/377 (56%), Gaps = 15/377 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + +K I ++ ++ + +S++ A R YG +E N +TGD ++ + E
Sbjct: 4 EMLEAFRILEEDKGIKKEDIIEAVTESLRSAYRRRYGQSESAAIEFNEKTGDFRVYTVRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + ++G + P +FGRVA Q+AKQ I++K+R+ R
Sbjct: 64 VVDEVFDSRLEISLKDALTISSAYELGDKIKFEEAPAEFGRVAAQAAKQTIMEKMRKQTR 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y +K+ EI+SGTV+R + + V+LG+ + + + + I E + DR++ ++Y
Sbjct: 124 TITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFQSHDRIEVFVY 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + +
Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG GS ++ + ++ E ID++ W PD A F+ NA+ P
Sbjct: 244 VDAIGTIVGRGGSNIKKITSKFHPARYDQKLDRMVPTEENIDVIEWVPDPAEFIYNAIAP 303
Query: 294 AIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V +V+ DED V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI ++ E
Sbjct: 304 AEVDQVIFDDEDSKHALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSDSEFEEMEV 363
Query: 353 KDFNERTQFFMQAINVD 369
Q VD
Sbjct: 364 AQETFEDQVESSQEQVD 380
>gi|288574932|ref|ZP_06393289.1| NusA antitermination factor [Dethiosulfovibrio peptidovorans DSM
11002]
gi|288570673|gb|EFC92230.1| NusA antitermination factor [Dethiosulfovibrio peptidovorans DSM
11002]
Length = 366
Score = 299 bits (767), Expect = 5e-79, Method: Composition-based stats.
Identities = 128/359 (35%), Positives = 220/359 (61%), Gaps = 5/359 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
+ ++ + E+++ + ++L + ++ A + + V+I+ ETGDIS+ +
Sbjct: 6 DFIRALMQLTEERNLSQSIILGSIEAALASAYKKYKEKNLEPEVKIDGETGDISIMEIRR 65
Query: 68 VVEEVENYTCQISLKVARDRD-PSIDIGGVVSDPLP--PMDFGRVAVQSAKQVIIQKVRE 124
VV+EV+N +++ + A P + G VV + P FGR+A Q+A+QVIIQ++++
Sbjct: 66 VVDEVKNSDAELTSEEAAALGFPGLVEGDVVKTEVEIAPESFGRIAAQTARQVIIQRLKD 125
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVK 183
AER+ + EF ++VG++++G V + E ++V + ++ ++ R+E I+ E G R+K
Sbjct: 126 AEREIIFNEFSERVGDMVNGVVFKAENDQILVRISERTEAMLPREERINGETYELGSRMK 185
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
Y+ DVR+ RGP++++SRTHP + +L +E+PEI +G+V++ + R+ G+RAK+AV +
Sbjct: 186 FYLLDVRQTTRGPRIVVSRTHPGLLRRLMELEIPEIRDGVVEIHGIVREAGARAKVAVTT 245
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LD 302
D ++DPVGACVG GSR++ + EL EKID+V+WS D ++ N L PA V +V +
Sbjct: 246 LDPNVDPVGACVGNGGSRIKTISNELNGEKIDVVIWSDDPLQYIRNTLSPAKVVRVEPIL 305
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
E +V +QLSLAIG+ GQNVRLA++LTGW +DI E + + +
Sbjct: 306 EQEKSAKVFARPDQLSLAIGKAGQNVRLAARLTGWKVDINPLEAPEKDSMPTLQDLFED 364
>gi|312862513|ref|ZP_07722755.1| transcription termination factor NusA [Streptococcus vestibularis
F0396]
gi|322517414|ref|ZP_08070287.1| transcription termination factor NusA [Streptococcus vestibularis
ATCC 49124]
gi|311101918|gb|EFQ60119.1| transcription termination factor NusA [Streptococcus vestibularis
F0396]
gi|322123896|gb|EFX95455.1| transcription termination factor NusA [Streptococcus vestibularis
ATCC 49124]
Length = 399
Score = 299 bits (767), Expect = 5e-79, Method: Composition-based stats.
Identities = 134/378 (35%), Positives = 214/378 (56%), Gaps = 15/378 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + EK I+++ ++ + +S++ A + YG VE N +TGD +F + E
Sbjct: 4 EMLEAFRVLEEEKHINKEDIIDAVVESLKSAYKRRYGQSESAVVEFNEKTGDFQVFTVRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R+ R
Sbjct: 64 VVDEVFDSRLEISLKDALAISSAYELGDKIRFEESVDEFGRVAAQSAKQTIMEKMRKQMR 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y ++K GEI+ GTV+R + + V+LG + + R + I E+ + D + Y+Y
Sbjct: 124 EITYNDYKQHEGEIMQGTVERFDQRFIYVNLGALEAQLSRQDQIPGESFKSHDVIDVYVY 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + +
Sbjct: 184 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG GS ++ VV+ E ID++ W D A F+ NA+ P
Sbjct: 244 VDAIGTIVGRGGSNIKKVVSRFHPTRLDAKTGIEVPVEENIDVIQWVEDPAEFIYNAIAP 303
Query: 294 AIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V V+ DED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 304 AEVDYVLFDEDDSKRATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYEALEA 363
Query: 353 KDFNERTQFFMQAINVDE 370
+ T+ + I +E
Sbjct: 364 EKSEAATEEVVDEIVAEE 381
>gi|261881035|ref|ZP_06007462.1| N utilization substance protein A [Prevotella bergensis DSM 17361]
gi|270332217|gb|EFA43003.1| N utilization substance protein A [Prevotella bergensis DSM 17361]
Length = 424
Score = 299 bits (767), Expect = 6e-79, Method: Composition-based stats.
Identities = 146/417 (35%), Positives = 238/417 (57%), Gaps = 5/417 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
++ ++ +K IDR ++SV+ +S + YG+ + V +NP+ GD ++R
Sbjct: 10 QMSMIDTFREFKTDKDIDRTTLVSVLEESFRNVLAKKYGSDENFDVIVNPDKGDFEIYRN 69
Query: 66 LEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
VVE EVE+ QISL A+ +P ++G VS+P+ FGR A+ + +Q + K+
Sbjct: 70 RVVVENGEVEDDNKQISLADAQKIEPDYEVGEDVSEPVDFAKFGRRAILTLRQTLASKIL 129
Query: 124 EAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182
E E D Y ++KD+VG++ISG V + + ++VD N++ ++ R E I R+ R G+ +
Sbjct: 130 ELEHDSLYNKYKDRVGQVISGEVYQVWKREVLLVDDENNELILPRSEQIPRDQYRKGETL 189
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
++ I V E P+++LSRT P FM +L EVPEI +G++ +K ++R PG RAK+AV
Sbjct: 190 RAVIDRVENENNNPKIILSRTSPVFMERLLEQEVPEIADGLIAIKKIARMPGERAKIAVE 249
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
S D IDPVGACVG+RGSRV +V EL +E ID++ W+ ++ F+ AL PA +T + LD
Sbjct: 250 SYDDRIDPVGACVGVRGSRVHGIVRELCNENIDVINWTANTMLFIQRALSPAKITSISLD 309
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
E+ + +V + E++SLAIGR G N++LAS LT +TID+ ++ Q++ + F
Sbjct: 310 EENRKADVYLQPEEVSLAIGRGGLNIKLASMLTEYTIDVYRVVNENEQGQQEDDVYLDQF 369
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+D+ I + A G + + + +EET + R+ E
Sbjct: 370 --NDEIDQWIIDAIKAIGLDTAKAVMNAPREMLVERADLEEETVDHVLEVLRKEFES 424
>gi|306832818|ref|ZP_07465953.1| transcription termination factor NusA [Streptococcus bovis ATCC
700338]
gi|304425053|gb|EFM28184.1| transcription termination factor NusA [Streptococcus bovis ATCC
700338]
Length = 399
Score = 299 bits (767), Expect = 6e-79, Method: Composition-based stats.
Identities = 130/378 (34%), Positives = 212/378 (56%), Gaps = 15/378 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + EK I+++ ++ + +S++ A + YG +E + + GD ++ + E
Sbjct: 7 EMLEAFRILEEEKHINKEDIIDAVKESLKSAYKRRYGQSESCVIEFDDKKGDFKVYTVRE 66
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + +ISL A + ++G + +FGRVA QSAKQ I++K+R R
Sbjct: 67 VVEEVFDSRLEISLSDALKISSAYELGDKIRFEESVAEFGRVAAQSAKQTIMEKMRRQIR 126
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y E+K GEI++GTV+R + + V+LG+ + + + I E + DR++ Y+Y
Sbjct: 127 EVTYNEYKQHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIEVYVY 186
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +G V +SR+HPQF+ ++ E+PE+++G V++ +VSR+ G R K+AV S + +
Sbjct: 187 KVENNPKGVNVFVSRSHPQFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 246
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG GS ++ V+++ E ID++ W D A F+ NA+ P
Sbjct: 247 VDAIGTIVGRGGSNIKKVISKFHPKRYDAKAGIEVPIEENIDVIQWVEDPAEFIYNAIAP 306
Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V V+ D ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 307 AEVDMVLFDEEDSKRATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYEALEA 366
Query: 353 KDFNERTQFFMQAINVDE 370
+ + V+E
Sbjct: 367 EHEANAAVTQEEVAPVEE 384
>gi|222153583|ref|YP_002562760.1| transcription elongation factor NusA [Streptococcus uberis 0140J]
gi|222114396|emb|CAR43159.1| putative N utilization substance protein A [Streptococcus uberis
0140J]
Length = 382
Score = 299 bits (766), Expect = 7e-79, Method: Composition-based stats.
Identities = 130/379 (34%), Positives = 218/379 (57%), Gaps = 15/379 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + EK I+++ ++ + +S++ A + YG +E N +TGD +F + E
Sbjct: 4 EMLEAFRILEEEKHINKEDIIEAVTESLKSAYKRRYGQSESCVIEFNEKTGDFQVFSVRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + +ISL A + ++G + +FGRVA QSAKQ I++K+R R
Sbjct: 64 VVEEVFDSRLEISLSDALAISSAYELGDKIRFEESVAEFGRVAAQSAKQTIMEKMRRQIR 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ + E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR++ Y+Y
Sbjct: 124 EVTFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIEVYVY 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + +
Sbjct: 184 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG GS ++ V+++ E ID++ W D A F+ NA+ P
Sbjct: 244 VDAIGTIVGRGGSNIKKVISKFHPKRFDAKTGIEIPVEENIDVIQWVEDPAEFIYNAIAP 303
Query: 294 AIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V V+ D+D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + + +
Sbjct: 304 AEVDMVLFDDDDLKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASDYEASEA 363
Query: 353 KDFNERTQFFMQAINVDEI 371
+ +Q + I+ +E
Sbjct: 364 ALADLDSQEAEEVISNEEE 382
>gi|322391042|ref|ZP_08064546.1| transcription elongation factor NusA [Streptococcus parasanguinis
ATCC 903]
gi|321142272|gb|EFX37746.1| transcription elongation factor NusA [Streptococcus parasanguinis
ATCC 903]
Length = 380
Score = 299 bits (765), Expect = 9e-79, Method: Composition-based stats.
Identities = 131/377 (34%), Positives = 211/377 (55%), Gaps = 15/377 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + +K I ++ ++ + +S++ A R YG +E N +TGD ++ + E
Sbjct: 4 EMLEAFRILEEDKGIKKEDIIEAVTESLRSAYRRRYGQSESAAIEFNEKTGDFRVYTVRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 64 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y +K+ EI+SGTV+R + + V+LG+ + + + + I E + DR++ ++Y
Sbjct: 124 TITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFQSHDRIEVFVY 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + +
Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG GS ++ + ++ E ID++ W PD A F+ NA+ P
Sbjct: 244 VDAIGTIVGRGGSNIKKITSKFHPARYDQKLDRMVPTEENIDVIEWVPDPAEFIYNAIAP 303
Query: 294 AIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V +V+ DED V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 304 AEVDQVIFDDEDSKHALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEEMEA 363
Query: 353 KDFNERTQFFMQAINVD 369
Q VD
Sbjct: 364 AQETFEDQVESGEEQVD 380
>gi|296269042|ref|YP_003651674.1| NusA antitermination factor [Thermobispora bispora DSM 43833]
gi|296091829|gb|ADG87781.1| NusA antitermination factor [Thermobispora bispora DSM 43833]
Length = 333
Score = 299 bits (765), Expect = 9e-79, Method: Composition-based stats.
Identities = 128/341 (37%), Positives = 200/341 (58%), Gaps = 24/341 (7%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ + ++ EK I D+V+ + D++ A G R E++ ETG ++++
Sbjct: 5 MSVLRSLEREKDISFDLVVKAIEDALLIAYHRTEGAAPKARAELDRETGHVTIW------ 58
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
A + D + ++ D P +F R+A +AKQVI+Q++R+AE +
Sbjct: 59 --------------AAELDENGEVIREYDD--TPSNFSRIAATTAKQVILQQLRDAEDEI 102
Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
+ EF + GE++SG +++ + V VDLG + ++ +E + E R GDR++ Y+
Sbjct: 103 NFGEFASREGELVSGVIQQGRDSRVVHVDLGKIEAILPPNEQVPGEEYRHGDRIRCYVVQ 162
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V++ +GP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S +
Sbjct: 163 VKKGPKGPSVTLSRTHPNLVKKLFALEVPEIADGTVEIAAIAREAGHRTKIAVRSRRPGV 222
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307
+ GAC+G GSRV+ V+ EL EKIDI+ WS D A FV NAL PA V++V +D +
Sbjct: 223 NAKGACIGPMGSRVRNVMAELHGEKIDIIDWSEDPAEFVGNALSPARVSRVEVVDRENRV 282
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
V VP QLSLAIG+ GQN RLA++LTGW IDI + +++
Sbjct: 283 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTQEA 323
>gi|262282171|ref|ZP_06059940.1| transcription termination factor NusA [Streptococcus sp. 2_1_36FAA]
gi|262262625|gb|EEY81322.1| transcription termination factor NusA [Streptococcus sp. 2_1_36FAA]
Length = 413
Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats.
Identities = 126/410 (30%), Positives = 218/410 (53%), Gaps = 15/410 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + +K I ++ ++ + +S++ A R YG ++ + + GD ++ + E
Sbjct: 4 EMLDAFRILEEDKGIKKEDIIDAVKESLRSAYRRRYGQADSALIDFDEKKGDFHVYTVRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 64 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y
Sbjct: 124 TITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + +
Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P
Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPAKYDAKSDRMVPVEENIDVIEWVADPAEFIYNAIAP 303
Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 304 AEVDQVIFNAEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMEA 363
Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD 402
+ + + ++ + ++ A E + + D
Sbjct: 364 ANELGGFGEVAEEVVYEDDANLTYTDQAMEEMTTAALATDLEESEVTELD 413
>gi|306830580|ref|ZP_07463747.1| transcription termination factor NusA [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
gi|325977559|ref|YP_004287275.1| transcription elongation protein nusA [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
gi|304427298|gb|EFM30403.1| transcription termination factor NusA [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
gi|325177487|emb|CBZ47531.1| Transcription elongation protein nusA [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
Length = 399
Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats.
Identities = 130/378 (34%), Positives = 212/378 (56%), Gaps = 15/378 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + EK I+++ ++ + +S++ A + YG +E + + GD ++ + E
Sbjct: 7 EMLEAFRILEEEKHINKEDIIDAVKESLKSAYKRRYGQSESCVIEFDDKKGDFKVYTVRE 66
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + +ISL A + ++G + +FGRVA QSAKQ I++K+R R
Sbjct: 67 VVEEVFDSRLEISLSDALKISSAYELGDKIRFEESVAEFGRVAAQSAKQTIMEKMRRQIR 126
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y E+K GEI++GTV+R + + V+LG+ + + + I E + DR++ Y+Y
Sbjct: 127 EVTYNEYKQHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIEVYVY 186
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +G V +SR+HPQF+ ++ E+PE+++G V++ +VSR+ G R K+AV S + +
Sbjct: 187 KVENNPKGVNVFVSRSHPQFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 246
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG GS ++ V+++ E ID++ W D A F+ NA+ P
Sbjct: 247 VDAIGTIVGRGGSNIKKVISKFHPKRYDAKAGVEVPIEENIDVIQWVEDPAEFIYNAIAP 306
Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V V+ D ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 307 AEVDMVLFDEEDSKRATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYEALEA 366
Query: 353 KDFNERTQFFMQAINVDE 370
+ + V+E
Sbjct: 367 EREANAAVAQEEVAPVEE 384
>gi|237739230|ref|ZP_04569711.1| transcription elongation factor NusA [Fusobacterium sp. 2_1_31]
gi|229422838|gb|EEO37885.1| transcription elongation factor NusA [Fusobacterium sp. 2_1_31]
Length = 353
Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats.
Identities = 127/344 (36%), Positives = 215/344 (62%), Gaps = 4/344 (1%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
M + + L+ D + EK I ++ VL + ++ A + YG ++ V ++ E+G+I
Sbjct: 1 MKAKDSKIFLEALDELEKEKGISKESVLEAIELALLAAYKKNYGEDENVEVIVDRESGEI 60
Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+ VV+ ++ + +ISL+ A++ IG V+ + +F R AVQ+ KQ++
Sbjct: 61 KVLASKTVVDADDLLDPNEEISLEDAKEIKKRAKIGDVLKFEVSCDNFRRNAVQNGKQIV 120
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLR 177
IQKVREAER+ Y +FK++ +I+SG ++R++ N+ +++ + ++ E + R
Sbjct: 121 IQKVREAEREHIYEKFKERENDIVSGIIRRIDNKKNIFIEIDGIELILPPAEQSYSDIYR 180
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
G+R+K ++Y+V + + P++L+SR + + KLF +E+PEI GI+++K+V+R+ GSRA
Sbjct: 181 VGERIKVFVYNVEKTNKFPKILISRKNEGLLKKLFEIEIPEISAGIIEIKSVAREAGSRA 240
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV+S +ID VGAC+G +G+R++ +V EL E+IDIV W FV L PA+V+
Sbjct: 241 KVAVYSEVPNIDTVGACIGQKGTRIKNIVDELNGERIDIVEWKESMEQFVSAVLSPAVVS 300
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
V + ED G +V+V QLSLAIG+ GQN RLA++LTG +DI
Sbjct: 301 SVEILED-GTAKVLVEPSQLSLAIGKNGQNARLAARLTGTRVDI 343
>gi|72161180|ref|YP_288837.1| transcription elongation factor NusA [Thermobifida fusca YX]
gi|71914912|gb|AAZ54814.1| transcription termination factor NusA [Thermobifida fusca YX]
Length = 329
Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats.
Identities = 135/347 (38%), Positives = 202/347 (58%), Gaps = 24/347 (6%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ + ++ EK I D+V+ + D++ A R G ++ RVE++ TG ++++
Sbjct: 5 MSVLRSLEREKDISVDLVVKAIEDALLIAYRRQEGPDTNARVELDRATGHVTVWA----- 59
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
EE + I A P FGR+A +AKQVI+Q++R+AE +
Sbjct: 60 EERDEEGRLIREYDA-----------------TPSGFGRIAASTAKQVILQRLRDAEDEI 102
Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
EF + +I+SG V++ + NV+VDLG + ++ E + E G+R+++Y+
Sbjct: 103 TLGEFAGRESQIVSGVVQQGKDPRNVLVDLGRVEAILPPQEQVPTETYTHGERLRAYVVQ 162
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
VRR RGP + LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ +
Sbjct: 163 VRRGHRGPSITLSRTHPNLVRKLFELEVPEIADGTVEIAAIAREAGHRTKMAVKSNKPGV 222
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307
+ GAC+G GSRV+ V+ ELR EKIDIV +S D A FV NAL PA VT V + D
Sbjct: 223 NAKGACIGPLGSRVRNVMNELRGEKIDIVDYSDDPAQFVANALSPAQVTHVEVLDAAARV 282
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354
VIVP Q SLAIG+ GQN RLA++LTGW IDI ++ E + ++
Sbjct: 283 ARVIVPDYQQSLAIGKEGQNARLAARLTGWRIDIRSDTEMAEQHGEE 329
>gi|332298598|ref|YP_004440520.1| NusA antitermination factor [Treponema brennaborense DSM 12168]
gi|332181701|gb|AEE17389.1| NusA antitermination factor [Treponema brennaborense DSM 12168]
Length = 483
Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats.
Identities = 149/444 (33%), Positives = 233/444 (52%), Gaps = 18/444 (4%)
Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70
+ +K I D +L + ++++ A + +GT + V+ + + D++++ +V+
Sbjct: 7 DAIRQLTQDKGISEDAILQTIENTLKAAYKRKFGTSDNAVVKFSDDLSDVAIYSRKVIVD 66
Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130
V + +I L A + P ++G + + P +F R AVQ+ KQ Q + E ++D
Sbjct: 67 GVYDPVTEIELDEALELSPECEVGDEIDILVDPKEFDRSAVQTGKQTAHQSLSEIQKDSL 126
Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190
+ E+KDKVGEII G +R G++ VDLG +GV+ RE DR+K+ I DV+
Sbjct: 127 FAEYKDKVGEIIIGYYQRERNGSIYVDLGKIEGVLPAKNQSPRETYHKNDRIKALITDVK 186
Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250
+ G Q++LSRT P F+ + +EVPEIY+ V++ + R+PG R K+AVFS IDP
Sbjct: 187 KTNSGLQLVLSRTDPDFVRAVVELEVPEIYDKTVEIHKIVREPGYRTKIAVFSHREDIDP 246
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIE 309
VGACVG++G R+QAV+ EL EKIDI+ + PD F+ NAL PA V VV+ DE +
Sbjct: 247 VGACVGLKGVRIQAVIRELEGEKIDILKYDPDPREFIKNALSPAEVLDVVILDESKRQAL 306
Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR-------------QKDFN 356
+VP+EQ SLAIG++G NVRLA++L W+ID+ TE + D
Sbjct: 307 AVVPEEQFSLAIGKQGLNVRLANRLADWSIDVKTEAQYEEFDSVVAESRKAVEQLFSDIP 366
Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACV----KISEIASIEGFDEETAVEIQGR 412
E + VDE +A +L G D+E+ I +I + D +
Sbjct: 367 ETIASVAELPGVDEQVAAVLKENGIEDIEQFMQSVESGAIRQIEGLSDTDITAVQSLIND 426
Query: 413 AREYLEGIDITLQKKIRELGVSEE 436
E++E + E +E
Sbjct: 427 TVEFVEDPAPVAAESAAEQIEEDE 450
>gi|154249422|ref|YP_001410247.1| transcription elongation factor NusA [Fervidobacterium nodosum
Rt17-B1]
gi|154153358|gb|ABS60590.1| NusA antitermination factor [Fervidobacterium nodosum Rt17-B1]
Length = 344
Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats.
Identities = 128/336 (38%), Positives = 206/336 (61%), Gaps = 2/336 (0%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
LL+ + EK I D + ++ ++ A ++ G ++ + IN +G+I +++LEV
Sbjct: 6 LLEALRELEREKGISVDESIEILEKALMSAYKNKTG-ERNVEIVINKLSGEIEAYQILEV 64
Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
VE+VEN QISL+ A P IG +V + GR A+Q AKQV+IQK+RE E++
Sbjct: 65 VEKVENENIQISLEDALKIKPDATIGDIVKRKMNIKRLGRFAIQVAKQVLIQKIREIEKE 124
Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
+QY ++ + VG +++ V +V + + +G + + + E I E D +K Y+ +
Sbjct: 125 KQYEKYAELVGRVVTAEVLKVTPEWLDIRIGKLETHLPKKEWIPGEEFEQSDLIKVYVRE 184
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V+++++GP+++++R +F+V L +EVPEI +GI+++ + R+PG R K+AV S D +
Sbjct: 185 VKKDKKGPKIIVTRIDNEFVVGLLKLEVPEIESGIIEIVKIVREPGVRTKIAVISHDPKV 244
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307
DPVG+C+G GSR+ ++ EL+ EKIDI+ WS D + NAL PA V V + D +
Sbjct: 245 DPVGSCIGPEGSRIAPILKELKIEKIDIIKWSNDPKELIANALLPASVIDVEILDYESKA 304
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343
V+V QLSLAIG+ GQN RLA++LTGW IDI
Sbjct: 305 SRVLVSPNQLSLAIGKAGQNARLAAKLTGWKIDIKP 340
>gi|288904585|ref|YP_003429806.1| transcription termination factor NusA [Streptococcus gallolyticus
UCN34]
gi|288731310|emb|CBI12861.1| Transcription termination factor NusA [Streptococcus gallolyticus
UCN34]
Length = 396
Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats.
Identities = 130/378 (34%), Positives = 212/378 (56%), Gaps = 15/378 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + EK I+++ ++ + +S++ A + YG +E + + GD ++ + E
Sbjct: 4 EMLEAFRILEEEKHINKEDIIDAVKESLKSAYKRRYGQSESCVIEFDDKKGDFKVYTVRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + +ISL A + ++G + +FGRVA QSAKQ I++K+R R
Sbjct: 64 VVEEVFDSRLEISLSDALKISSAYELGDKIRFEESVAEFGRVAAQSAKQTIMEKMRRQIR 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y E+K GEI++GTV+R + + V+LG+ + + + I E + DR++ Y+Y
Sbjct: 124 EVTYNEYKQHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIEVYVY 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +G V +SR+HPQF+ ++ E+PE+++G V++ +VSR+ G R K+AV S + +
Sbjct: 184 KVENNPKGVNVFVSRSHPQFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG GS ++ V+++ E ID++ W D A F+ NA+ P
Sbjct: 244 VDAIGTIVGRGGSNIKKVISKFHPKRYDAKAGVEVPIEENIDVIQWVEDPAEFIYNAIAP 303
Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V V+ D ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 304 AEVDMVLFDEEDSKRATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYEALEA 363
Query: 353 KDFNERTQFFMQAINVDE 370
+ + V+E
Sbjct: 364 EREANAAVAQEEVAPVEE 381
>gi|322391412|ref|ZP_08064882.1| transcription elongation factor NusA [Streptococcus peroris ATCC
700780]
gi|321145838|gb|EFX41229.1| transcription elongation factor NusA [Streptococcus peroris ATCC
700780]
Length = 378
Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats.
Identities = 127/370 (34%), Positives = 212/370 (57%), Gaps = 15/370 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E
Sbjct: 4 EMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 64 VVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPGEFGRVAAQSAKQTIMEKMRKQTR 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y
Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + +
Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P
Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKSDRMVPVEENIDVIEWVADPAEFIYNAIAP 303
Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E +
Sbjct: 304 AEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMEE 363
Query: 353 KDFNERTQFF 362
+
Sbjct: 364 AGQVDFADTD 373
>gi|296877069|ref|ZP_06901110.1| transcription termination factor NusA [Streptococcus parasanguinis
ATCC 15912]
gi|296431930|gb|EFH17736.1| transcription termination factor NusA [Streptococcus parasanguinis
ATCC 15912]
Length = 380
Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats.
Identities = 131/377 (34%), Positives = 211/377 (55%), Gaps = 15/377 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + +K I ++ ++ + +S++ A R YG +E N +TGD ++ + E
Sbjct: 4 EMLEAFRILEEDKGIKKEDIIEAVTESLRSAYRRRYGQSESAAIEFNEKTGDFRVYTVRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 64 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y +K+ EI+SGTV+R + + V+LG+ + + + + I E + DR++ ++Y
Sbjct: 124 TITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFQSHDRIEVFVY 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + +
Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG GS ++ + ++ E ID++ W PD A F+ NA+ P
Sbjct: 244 VDAIGTIVGRGGSNIKKITSKFHPARYDQKLERMVPTEENIDVIEWVPDPAEFIYNAIAP 303
Query: 294 AIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V +V+ DED V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 304 AEVDQVIFDDEDSKHALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEEMEA 363
Query: 353 KDFNERTQFFMQAINVD 369
Q VD
Sbjct: 364 AQETFEDQVESGEEQVD 380
>gi|322387178|ref|ZP_08060788.1| transcription elongation factor NusA [Streptococcus infantis ATCC
700779]
gi|321141707|gb|EFX37202.1| transcription elongation factor NusA [Streptococcus infantis ATCC
700779]
Length = 378
Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats.
Identities = 127/370 (34%), Positives = 213/370 (57%), Gaps = 15/370 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E
Sbjct: 4 EMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 64 VVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPGEFGRVAAQSAKQTIMEKMRKQTR 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y
Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + +
Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P
Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKSDRMVPVEENIDVIEWVADPAEFIYNAIAP 303
Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E +
Sbjct: 304 AEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMEE 363
Query: 353 KDFNERTQFF 362
+ +
Sbjct: 364 AGQVDYAETD 373
>gi|325110092|ref|YP_004271160.1| NusA antitermination factor [Planctomyces brasiliensis DSM 5305]
gi|324970360|gb|ADY61138.1| NusA antitermination factor [Planctomyces brasiliensis DSM 5305]
Length = 496
Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats.
Identities = 146/420 (34%), Positives = 240/420 (57%), Gaps = 36/420 (8%)
Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
N E+L+I DA+ +K ID+++V + +I A R YG ++ V I+ +G S+
Sbjct: 1 MNASEVLRIVDAIHRDKGIDKEIVFEGIEQAILTALRKYYGDEDELIVLIDRNSGAPSVQ 60
Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+ L P GR+A Q+AKQV+IQK+R
Sbjct: 61 HN--------------------------------GEYLDPDILGRIAAQTAKQVMIQKIR 88
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183
EAERD Y EF ++ ++++GTV R+E+G V++G + ++ R E I E+ R +R++
Sbjct: 89 EAERDALYDEFIEQKSQLLTGTVTRLEHGVATVNIGKVEAILPRSEQIPGESHRVNERIR 148
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+ I DVR+ +++LSR HP F+ +LF +E+PEI +++V++++R+ G R K+AV
Sbjct: 149 AVITDVRKAGSRIKIVLSRVHPDFVRRLFEVEIPEIAENVIEVRSLAREAGYRTKIAVSC 208
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
D+SID VGACVG+RG+R++ +V EL E+IDIV W+ + NAL+PA V V+L
Sbjct: 209 YDNSIDAVGACVGVRGARIRNIVDELSGERIDIVRWNDSLQILIPNALQPAEVEDVILCP 268
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
+GR+ V+V +QLSLAIG++GQNVRLAS+L GW I+++T +E ++ ++ +
Sbjct: 269 MLGRVIVLVRDDQLSLAIGKKGQNVRLASKLVGWDIEVMTRDELDEQLERSVIAFSEVPL 328
Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423
V E +A LV++GF ++L+ ++ + + G +E EI A ++
Sbjct: 329 ----VTEDLAESLVSQGFFSFDDLSVIEPEHLVELSGLTDEQCDEIIEHADAESLRLEQE 384
>gi|196019394|ref|XP_002118970.1| hypothetical protein TRIADDRAFT_62947 [Trichoplax adhaerens]
gi|190577493|gb|EDV18544.1| hypothetical protein TRIADDRAFT_62947 [Trichoplax adhaerens]
Length = 348
Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats.
Identities = 150/338 (44%), Positives = 237/338 (70%), Gaps = 11/338 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L +A+AVA +K I ++ ++ + +++ AA+ YG ++ IN G+I L+R +
Sbjct: 10 EILHVAEAVARDKGISKESIIEALEEAMAIAAKRKYGANIKVKAHINRNLGNIELYREVL 69
Query: 68 VV----------EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117
VV +E I + A++ DP I+ G V+ LPP++ GR+ SAKQ+
Sbjct: 70 VVKDGFISDNTRDENNEEVKTIEISKAQETDPDINEGDVIKQILPPLEIGRLNAISAKQI 129
Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR 177
II KV+E E+D+ + E+K++VGE+++G V+++E G IV LG+++ ++++D+T+ + +
Sbjct: 130 IINKVKELEKDKVFEEYKNRVGEVLNGVVEKIETGGYIVKLGSAEAILKKDQTLKTDFYK 189
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
GDR+++ + + +E GP ++LSRTH F+++LF EVPEIY+ I++VK ++RDPGSR
Sbjct: 190 LGDRIRACLAKLDKESNGPILILSRTHKDFVIQLFKQEVPEIYDRIIEVKNIARDPGSRT 249
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA-IV 296
K+AV+SSD SIDPVG+CVGMRG RVQA++ EL+ EKIDIV WS D ATFV+N+L + V
Sbjct: 250 KIAVYSSDPSIDPVGSCVGMRGVRVQAIIKELKGEKIDIVKWSDDPATFVVNSLGSSIRV 309
Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQL 334
+KV++DE+ +IE+IVP+E S AIGRRGQN++L S+L
Sbjct: 310 SKVIIDEEQNKIEIIVPEEDQSQAIGRRGQNIKLISEL 347
>gi|54026039|ref|YP_120281.1| transcription elongation factor NusA [Nocardia farcinica IFM 10152]
gi|54017547|dbj|BAD58917.1| putative transcriptional termination/antitermination factor
[Nocardia farcinica IFM 10152]
Length = 342
Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats.
Identities = 132/363 (36%), Positives = 201/363 (55%), Gaps = 32/363 (8%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+E+ + A+ +K I + V+S + ++ A R G + RV+IN TG + +
Sbjct: 2 NIEI-EALRAIVADKGISIETVISAIESALLTAYRHTEGHQPNARVDINQRTGAVRVM-- 58
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
AR+ D ++ D P FGR+A +A+QV++Q++R+A
Sbjct: 59 ------------------ARELDADGNVISEWDD--TPEGFGRIAATTARQVVLQRLRDA 98
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETISRENLR 177
E ++ + EF G+I+ G V+R N V+V +G ++G+I E + E
Sbjct: 99 ENEKSFGEFSTHEGDIVGGVVQRDARANARGTVVVRIGSELHGTEGLIPPAEQVPGETYE 158
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
GDR+K Y+ V R RGPQ+ LSRTHP + +LF +EVPEI +G V++ AV+R+ G R+
Sbjct: 159 HGDRIKCYVVGVSRGPRGPQITLSRTHPNLVRRLFALEVPEIADGSVEIVAVAREAGHRS 218
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV S+ ++ GAC+G G RV+ V++EL EKIDI+ ++ D ATFV NAL P+ V
Sbjct: 219 KIAVRSTVPGVNAKGACIGPMGQRVRNVMSELAGEKIDIIDYADDPATFVGNALSPSKVV 278
Query: 298 KVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356
V + D D V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ +
Sbjct: 279 SVTIVDPDARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDAAPDVGDGMRTE 338
Query: 357 ERT 359
Sbjct: 339 AHR 341
>gi|289167249|ref|YP_003445516.1| transcription termination-antitermination factor [Streptococcus
mitis B6]
gi|288906814|emb|CBJ21648.1| transcription termination-antitermination factor [Streptococcus
mitis B6]
Length = 378
Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats.
Identities = 127/360 (35%), Positives = 211/360 (58%), Gaps = 15/360 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E
Sbjct: 4 EMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 64 VVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y
Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + +
Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P
Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKSDRMVPIEENIDVIEWVADPAEFIYNAIAP 303
Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E +
Sbjct: 304 AEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMEE 363
>gi|320103081|ref|YP_004178672.1| NusA antitermination factor [Isosphaera pallida ATCC 43644]
gi|319750363|gb|ADV62123.1| NusA antitermination factor [Isosphaera pallida ATCC 43644]
Length = 520
Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats.
Identities = 160/418 (38%), Positives = 245/418 (58%), Gaps = 37/418 (8%)
Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66
L+L +I D + EK I +D+++ + +I AAR + + + I+P+T I R
Sbjct: 3 LDLPRIIDTIHREKGIPKDLLIDAIQTAILNAARKFFNDSEGLSITIDPQTLKIDATRG- 61
Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
+ + P FGR+A Q+AKQ++IQK REAE
Sbjct: 62 -------------------------------GERVDPAVFGRIAAQTAKQIMIQKFREAE 90
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
RD + EF+ + G++++GTV+R E G V+V+LG +D ++ R E I E L PGDR+++ +
Sbjct: 91 RDTLFEEFESQKGDLLTGTVQRFEGGAVLVNLGKTDAILPRPEQIPGEALHPGDRIRAVV 150
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
++V+++ + +++LSRTHP F+ KLF +E+PEI + +Q++A++R+ G R K+AV S D
Sbjct: 151 HEVKKQGQRVKIILSRTHPDFVRKLFELEIPEIADNTIQIRALAREAGYRTKVAVASVDP 210
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
+D VGACVG+RGSR++ + EL E+IDIV W+ + NAL PA + +V+L +G
Sbjct: 211 KVDAVGACVGVRGSRIKTITDELGGERIDIVRWNDSLQVLIPNALAPAEIDEVMLCGLLG 270
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366
R V+V +QLSLAIGRRGQNVRLAS+L GW I+I+T EE Q F Q
Sbjct: 271 RAIVLVRDDQLSLAIGRRGQNVRLASKLVGWDIEIMTAEELDEVID----RAIQMFTQIE 326
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISE-IASIEGFDEETAVEIQGRAREYLEGIDIT 423
VD +A LV +G ++L+ ++I + +A+IEG D E A+ I A E E
Sbjct: 327 GVDAELAQNLVEQGILSYDDLSVMEIDDLVATIEGLDHERAIRIVEAAEELAEQQSEE 384
>gi|270292191|ref|ZP_06198406.1| N utilization substance protein A [Streptococcus sp. M143]
gi|270279719|gb|EFA25561.1| N utilization substance protein A [Streptococcus sp. M143]
Length = 378
Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats.
Identities = 127/366 (34%), Positives = 212/366 (57%), Gaps = 15/366 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E
Sbjct: 4 EMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 64 VVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y
Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + +
Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P
Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKSDRMIPVEENIDVIEWVADPAEFIYNAIAP 303
Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E +
Sbjct: 304 AEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMEE 363
Query: 353 KDFNER 358
+
Sbjct: 364 AGQVDY 369
>gi|256371439|ref|YP_003109263.1| NusA antitermination factor [Acidimicrobium ferrooxidans DSM 10331]
gi|256008023|gb|ACU53590.1| NusA antitermination factor [Acidimicrobium ferrooxidans DSM 10331]
Length = 330
Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats.
Identities = 134/350 (38%), Positives = 211/350 (60%), Gaps = 24/350 (6%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E++ + +A EK + + +L +A+++ A + G + VEI+P +G I +
Sbjct: 5 NPEVMDALEVIAREKGLSVETLLESLANALAAAYKRRPGAAEEAYVEIDPASGTIRVIC- 63
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
++ D + + V P DFGR+A Q+AKQV++QK+REA
Sbjct: 64 -------------------QELDENGTV--VREWEDTPRDFGRIAAQAAKQVMLQKIREA 102
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER+++Y E+ + G++++G V +++ ++DLG + ++ E+ S E R+K+Y
Sbjct: 103 EREQKYEEYAGREGDVVTGIVSQIDPRFTLLDLGKIEAIMPHSESPSNERYSVNQRLKAY 162
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I +VRR +GPQ+++SRTHP + +LF +EVPEI +G+V+VKA++R+PG R K+AV+S+D
Sbjct: 163 IVEVRRSIKGPQIVVSRTHPGLVRRLFEVEVPEIASGVVEVKAIAREPGHRTKIAVWSND 222
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
S+DPVGACVG RGSRV VV EL EK+DIV +S D A FV A+ PA + +
Sbjct: 223 RSVDPVGACVGARGSRVHTVVNELLGEKVDIVPFSEDLAEFVERAIVPAHALSATV--EG 280
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355
V+VP +QLSLAIGR GQN RLA++LTG ++I + E ++
Sbjct: 281 RDALVVVPDDQLSLAIGREGQNARLAARLTGTHLEIRPQSEVEGRQEGQP 330
>gi|300788185|ref|YP_003768476.1| transcription elongation factor NusA [Amycolatopsis mediterranei
U32]
gi|299797699|gb|ADJ48074.1| transcription elongation factor NusA [Amycolatopsis mediterranei
U32]
Length = 348
Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats.
Identities = 131/366 (35%), Positives = 202/366 (55%), Gaps = 27/366 (7%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ A+ +K I + V+ + ++ A + G S R++I+ +TG + +
Sbjct: 5 IAALRAIERDKDIPFETVIEAIETALLTAYKHTEGHQSHARIDIDRKTGLVRVL------ 58
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
A + D P FGR+A +A+QVI+Q++R+AE ++
Sbjct: 59 --------------AHTLTHDGQVDEEWDD--TPEGFGRIAATTARQVILQRLRDAEHEK 102
Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
+ EF K GEI++G ++R N V+V +G+++GV+ E ++ E+ G R+K+Y
Sbjct: 103 TFGEFSTKEGEIVAGVIQRDARANARGMVVVQVGDTEGVLPSGEQVAGESYEHGSRIKAY 162
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ V R RGPQ+ LSR+HP + KLF +EVPEI +G V++ AV+R+PG R K+AV S+
Sbjct: 163 VVTVSRSNRGPQITLSRSHPNLVRKLFALEVPEIADGTVEIAAVAREPGHRTKIAVKSTV 222
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDED 304
++ GAC+G G+RV+ V++EL EKIDI+ +S D A FV NAL PA V V +DE
Sbjct: 223 PGVNAKGACIGPVGARVRNVMSELAGEKIDIIDFSEDPARFVGNALSPAKVVSVRVVDER 282
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ + + R
Sbjct: 283 AKTARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDAAPVDDEGDQDHARPPRPAA 342
Query: 365 AINVDE 370
E
Sbjct: 343 TTGSAE 348
>gi|326799022|ref|YP_004316841.1| NusA antitermination factor [Sphingobacterium sp. 21]
gi|326549786|gb|ADZ78171.1| NusA antitermination factor [Sphingobacterium sp. 21]
Length = 411
Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats.
Identities = 132/395 (33%), Positives = 231/395 (58%), Gaps = 10/395 (2%)
Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV--ENYTC 77
K+IDR V+SV+ + + R +GT + V +NP+ GD+ ++R VVE+ E+
Sbjct: 17 KNIDRPTVISVLEEVFRSMIRKRFGTDENCDVIVNPDNGDLEIWRTRTVVEDEFSEDDDL 76
Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137
+I L AR DP ++IG + + FGR A+ +A+Q ++ KV E E+D + ++KD+
Sbjct: 77 EIELAEARKVDPDLEIGDDFIEEITLESFGRRAILAARQTLVSKVLELEKDEIFKKYKDR 136
Query: 138 VGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196
VGEI++G V + + +++D ++ ++ + E I + + GD +++ +Y V P
Sbjct: 137 VGEIVTGEVYQIWKKETLVLDDEGNELILPKTEQIPADYFKKGDTIRAVVYKVDMMNTTP 196
Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256
++++SRT P+F+ +LF +EVPEI++G++ +K + R+PG RAK+AV S D IDPVGACVG
Sbjct: 197 KIIISRTAPEFLQRLFELEVPEIFDGLITIKKIVREPGERAKVAVESYDDRIDPVGACVG 256
Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316
M+GSR+ +V ELR+E ID++ ++ + + ++ AL PA ++ + LD++ R V + +Q
Sbjct: 257 MKGSRIHGIVRELRNENIDVINFTNNISLYIQRALSPARISSIKLDDEEKRAAVYLQSDQ 316
Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376
+SLAIGR G N++LA +LTG+ ID+ E +++ A +D I
Sbjct: 317 VSLAIGRGGHNIKLAGKLTGYEIDVYRESDENDED-------VDLEEFADEIDGWILDEF 369
Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411
G + + + + E+ +E T E+
Sbjct: 370 KRVGLDTAKSVLALSMDELVRRTDLEENTIQEVVQ 404
>gi|149178853|ref|ZP_01857433.1| transcription elongation factor NusA [Planctomyces maris DSM 8797]
gi|148842328|gb|EDL56711.1| transcription elongation factor NusA [Planctomyces maris DSM 8797]
Length = 494
Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats.
Identities = 154/410 (37%), Positives = 242/410 (59%), Gaps = 32/410 (7%)
Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
+ E+L+I DA+ +KSID+++V + +I AAR +G ++ V+I+ +TG+ ++
Sbjct: 1 MDGKEVLRIVDAIQRDKSIDKEIVFGGIEQAILSAARRHFGDDHELSVDIDRDTGEPTVL 60
Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
G + + GRVA Q+AKQV+IQK+R
Sbjct: 61 CD----------------------------GDKLGKDILGEILGRVAAQTAKQVMIQKIR 92
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183
EAERD + E+ + + +SGTV RVE G V+V+LG +G++ R E I E+ R DRV+
Sbjct: 93 EAERDTVFDEYMEMQYQSVSGTVSRVEGGAVLVNLGKIEGILPRGEQIPGESFRVNDRVR 152
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+ + DVR+ +V+LSRTHP + +LF +E+PE+ + I+ V++++R+ G R+K+AV
Sbjct: 153 AVVLDVRKAGSRVKVILSRTHPDMVRRLFELEIPEVADRIIDVRSLAREAGYRSKVAVSC 212
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
DSSID VGACVGMRG+R++ +V EL E+IDIV W+ V N+L+PA V V+L
Sbjct: 213 IDSSIDCVGACVGMRGARIKNIVDELAGERIDIVRWNDSLQVLVPNSLQPAEVEDVILCP 272
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
+GR+ V+V +QL LAIGR+GQNVRLAS+L GW I+++T+ E ++ + F
Sbjct: 273 MLGRVIVLVRDDQLPLAIGRKGQNVRLASKLVGWDIEVMTQTELDE----QLDKTVEAFS 328
Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413
V E +A LV++GF +L+ ++ ++A + G E +I A
Sbjct: 329 SIPGVSEELAESLVSQGFFSYYDLSVIEPDQLAELGGLTAEQCEQIVEVA 378
>gi|325105520|ref|YP_004275174.1| NusA antitermination factor [Pedobacter saltans DSM 12145]
gi|324974368|gb|ADY53352.1| NusA antitermination factor [Pedobacter saltans DSM 12145]
Length = 411
Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats.
Identities = 122/381 (32%), Positives = 222/381 (58%), Gaps = 10/381 (2%)
Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77
K+IDR V+SV+ + + R +GT + V +NP+ GD+ ++R V+E+ E+
Sbjct: 17 KNIDRPTVISVLEEVFRSMLRKRFGTDENCDVIVNPDNGDLEIWRTRTVMEDGFSEDDDL 76
Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137
+I L A DP +++G + + FGR A+ +A+Q ++ K+ E E+D + +KD+
Sbjct: 77 EIELADAHKIDPDLEVGDDFIEQITLESFGRRAILAARQTLVSKILELEKDEIFKNYKDR 136
Query: 138 VGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196
+GEI++G V + + +++D ++ ++ + E I + + GD V++ + V P
Sbjct: 137 IGEIVTGEVYQVWKKETLVLDDEGNELILPKTEQIPADYFKKGDSVRAVVLKVDMMNANP 196
Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256
++++SRT P F+ +LF +EVPE+++G++ +K + R+PG RAK+AV S D IDPVGACVG
Sbjct: 197 KIIISRTAPAFLQRLFELEVPEVFDGLITIKNIVREPGERAKVAVESYDDRIDPVGACVG 256
Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316
M+GSR+ +V EL++E ID++ ++ + + ++ AL PA ++ + LD++ R V + +Q
Sbjct: 257 MKGSRIHGIVRELKNENIDVINFTNNISLYIQRALSPAKISSIKLDDETKRAAVYLKPDQ 316
Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376
+SLAIGR G N++LA +LTG+ ID+ E + + +D I L
Sbjct: 317 VSLAIGRGGHNIKLAGKLTGYEIDVYREASEEDEDVDLDE-------FSDEIDSWIIDEL 369
Query: 377 VAEGFADVEELACVKISEIAS 397
G + + + ++E+
Sbjct: 370 KKVGLDTAKSVLALNVNELVK 390
>gi|224543310|ref|ZP_03683849.1| hypothetical protein CATMIT_02510 [Catenibacterium mitsuokai DSM
15897]
gi|224523843|gb|EEF92948.1| hypothetical protein CATMIT_02510 [Catenibacterium mitsuokai DSM
15897]
Length = 435
Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats.
Identities = 139/395 (35%), Positives = 229/395 (57%), Gaps = 7/395 (1%)
Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLLEVVE 70
+ + +K +D +V+ + +++ K+ + Y GT S + I+ + G I +F VV+
Sbjct: 11 ALENLIEDKGLDSAIVIEALTEALAKSYKKNYCGTESIVDCRIDGD-GQIRIFITHHVVD 69
Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130
+V + + S++ A++ DP +G V + +FGR+A KQ++ QK+REAE++
Sbjct: 70 DVNDEDYEYSIEEAQEIDPKYQVGDEVVEEADISEFGRLAAIQTKQLLRQKIREAEKEAL 129
Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190
Y E+ +K+ EII+GTV RVE I+++G + ++ + I E L G+ VK Y+ +V
Sbjct: 130 YNEYINKLDEIINGTVDRVEERFAIINIGKTGALLSSKDQIPGETLVEGEHVKVYVSEVE 189
Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250
R +G + +SRTH + +LF MEVPEI+ G V++K+VSR+ G R+K+AV++++ IDP
Sbjct: 190 RTTKGTHISVSRTHEGLVKRLFEMEVPEIFEGTVEIKSVSREAGERSKIAVYTANPDIDP 249
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEV 310
+GACVG +G+RV+ VV EL E IDI+ WS D TF+ +AL PA V +V L+ V
Sbjct: 250 IGACVGPKGNRVRNVVEELNGEMIDIIEWSDDPVTFISHALSPAKVERVKLNHAKNSALV 309
Query: 311 IVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDE 370
+VP +QLSLAIG+RGQN RLA +LT W IDI S++ + + + E
Sbjct: 310 VVPDDQLSLAIGKRGQNARLAVKLTNWKIDI-----KSVSEILEEGIDLDAPEVDMELLE 364
Query: 371 IIAHLLVAEGFADVEELACVKISEIASIEGFDEET 405
+ + + +E + + E + +E+
Sbjct: 365 KMKKSMEEHEADEEKETITLTLDEDKVEDKVEEDL 399
>gi|306830060|ref|ZP_07463246.1| transcription termination factor NusA [Streptococcus mitis ATCC
6249]
gi|304427773|gb|EFM30867.1| transcription termination factor NusA [Streptococcus mitis ATCC
6249]
Length = 378
Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats.
Identities = 127/366 (34%), Positives = 212/366 (57%), Gaps = 15/366 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E
Sbjct: 4 EMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 64 VVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y
Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + +
Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P
Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKSDRMIPVEENIDVIEWVADPAEFIYNAIAP 303
Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E +
Sbjct: 304 AEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMEE 363
Query: 353 KDFNER 358
+
Sbjct: 364 AGQVDY 369
>gi|306824618|ref|ZP_07457963.1| transcription termination factor NusA [Streptococcus sp. oral taxon
071 str. 73H25AP]
gi|304433186|gb|EFM36157.1| transcription termination factor NusA [Streptococcus sp. oral taxon
071 str. 73H25AP]
Length = 378
Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats.
Identities = 127/366 (34%), Positives = 212/366 (57%), Gaps = 15/366 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E
Sbjct: 4 EMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 64 VVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y
Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + +
Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P
Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKSDRMIPVEENIDVIEWVADPAEFIYNAIAP 303
Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E +
Sbjct: 304 AEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMEE 363
Query: 353 KDFNER 358
+
Sbjct: 364 VGQVDY 369
>gi|226226960|ref|YP_002761066.1| transcription elongation protein NusA [Gemmatimonas aurantiaca
T-27]
gi|226090151|dbj|BAH38596.1| transcription elongation protein NusA [Gemmatimonas aurantiaca
T-27]
Length = 438
Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats.
Identities = 156/420 (37%), Positives = 239/420 (56%), Gaps = 12/420 (2%)
Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
A ++L ++ K I R+ + ++ D I A +G VEI+ G+I +
Sbjct: 2 AGSADILTALRELSNLKQITREELHGLLQDGIHAALAKKHGANVQAEVEIDEARGEIRIV 61
Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
L VV+EV + + +++++ AR DP +G V+ P+ M+FGR AVQ+AKQ IIQ+VR
Sbjct: 62 LLKTVVDEVTDESREVTVEEARFMDPEFQVGDVMEIPVDFMEFGRTAVQAAKQRIIQRVR 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN---SDGVIRRDETISRENLRPGD 180
E ER R EF +VG+++SG V+++E G ++V L ++ +I E RE+ G+
Sbjct: 122 EGERTRIRDEFAGRVGDLLSGEVQQIERGKLVVMLNKFREAEAIIPYREQNHREHYHQGE 181
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
V++ + V +GP+++LSR+ F+ LF +EVPEI GIV++KA +R+ GSR K+A
Sbjct: 182 PVRAVLKRVEDTPKGPRLILSRSDALFVQALFKLEVPEIQQGIVEIKAAAREVGSRTKIA 241
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S D ++DPVGACVG++G+RVQAVV EL E+IDIV WSPD F AL PA V +V
Sbjct: 242 VTSRDEAVDPVGACVGLKGARVQAVVNELGGERIDIVPWSPDPERFAKLALAPARVARVF 301
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI---------NR 351
D I+ +V ++QLSLAIGR GQNVRLAS+LTGW ID+ + E
Sbjct: 302 SDAASRTIQAVVDEDQLSLAIGRNGQNVRLASELTGWKIDLYSSREWLEKGGEAPLFAPL 361
Query: 352 QKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411
++ E + ++ +L G+ + ++ + ++ + G E A I
Sbjct: 362 PEETEEADVPLNEIEGLETATVAVLAEAGYRTLNDILDLDRDDLLRLPGIAPEEADRIMA 421
>gi|293364176|ref|ZP_06610903.1| transcription elongation factor NusA [Streptococcus oralis ATCC
35037]
gi|315611732|ref|ZP_07886654.1| transcription termination factor NusA [Streptococcus sanguinis ATCC
49296]
gi|291317354|gb|EFE57780.1| transcription elongation factor NusA [Streptococcus oralis ATCC
35037]
gi|315316147|gb|EFU64177.1| transcription termination factor NusA [Streptococcus sanguinis ATCC
49296]
Length = 378
Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats.
Identities = 127/366 (34%), Positives = 212/366 (57%), Gaps = 15/366 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E
Sbjct: 4 EMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 64 VVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y
Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + +
Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P
Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKSDRMIPVEENIDVIEWVADPAEFIYNAIAP 303
Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E +
Sbjct: 304 AEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMEE 363
Query: 353 KDFNER 358
+
Sbjct: 364 AGQVDY 369
>gi|291513589|emb|CBK62799.1| transcription termination factor NusA [Alistipes shahii WAL 8301]
Length = 409
Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats.
Identities = 139/418 (33%), Positives = 232/418 (55%), Gaps = 12/418 (2%)
Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
+ L L+ K+ID+ ++ V+ D + A + Y T + V INPE GD+ ++
Sbjct: 1 MDNLNLISNFAEFKELKNIDKSTMIGVLEDVFRHALQKQYETDENFDVIINPEKGDLEIW 60
Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
R VVE+ VE+ QIS+ + DP+ +IG +D + FGR AV S +Q + +
Sbjct: 61 RNRTVVEDDAVEDPNAQISVSEVKAIDPTYEIGDEYADEIKLSSFGRRAVLSLRQNLASR 120
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNV-IVDLGNSDGVIRRDETISRENLRPGD 180
+ + E+ Y ++ +KVG+I++G V +V V I+D ++ ++ + E I + R GD
Sbjct: 121 ILDLEKASLYEKYSEKVGDIVTGEVYQVWKKEVLILDDEENELILPKAEQIPNDFYRKGD 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
+K+ + V P+++LSRT QF+ +LF EVPEI++G++ +K + R PG RAK+A
Sbjct: 181 TIKAIVKSVEMNNNQPRIILSRTANQFLERLFEQEVPEIFDGLITIKKIVRIPGERAKVA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S D IDPVGACVGM+GSR+ ++V ELR+E ID+V ++ + + +L PA V+ +
Sbjct: 241 VESYDERIDPVGACVGMKGSRIYSIVKELRNENIDVVNYTANPTLMIQRSLNPAKVSSIT 300
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DE+ V + +Q+SLAIG+ G N+RL+ LTG+ ID+ E E+ +F +
Sbjct: 301 IDEEKMTASVYLKPDQVSLAIGKGGLNIRLSKMLTGYDIDVYREVEEEDVALTEFAD--- 357
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
+D + L A G + + + + EIA+ + E A ++ + E
Sbjct: 358 ------EIDGWVIDALKAAGCDTAKSVLELPVEEIAARADLELEQAQKVVEILKAEFE 409
>gi|253581490|ref|ZP_04858715.1| transcription elongation factor NusA [Fusobacterium varium ATCC
27725]
gi|251836560|gb|EES65095.1| transcription elongation factor NusA [Fusobacterium varium ATCC
27725]
Length = 361
Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats.
Identities = 137/353 (38%), Positives = 214/353 (60%), Gaps = 3/353 (0%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
M S + L+ D + EK I ++ +L + ++ A + +G ++ VEIN ETGD+
Sbjct: 1 MKSKDAKVFLEALDELEREKGISKESLLLTVEQALLAAYKKNHGEEENVEVEINRETGDV 60
Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
L+ + VVE ++ + +ISL A++ +G +V + +F R A+Q+ KQ++
Sbjct: 61 KLYEVKTVVETEDLYDAAIEISLDDAQEIKKRAKVGDIVRIEINCEEFRRNAIQNGKQIV 120
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177
IQKVREAER Y FK+K +II+G ++R E N+ V+ + ++ E + R
Sbjct: 121 IQKVREAERQYIYDRFKEKENDIINGIIRRIDEKKNIFVEFDGIEAILPTTEQSPADTYR 180
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
G+R+K ++ +V + + P++++SR H + KLF +E+PEI +G++++KAV+R+ GSRA
Sbjct: 181 VGERLKVFLAEVEKTNKFPKIVISRKHEGLLKKLFELEIPEITSGLIEIKAVAREAGSRA 240
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV+SSD +ID VGAC+G +G R++ +V EL EKIDIV+W FV L PA V
Sbjct: 241 KVAVYSSDPNIDTVGACIGQKGLRIKNIVNELNGEKIDIVIWKESVEEFVSAVLSPAKVK 300
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350
V + ED VIV QLSLAIG+ GQN RLA++LTG +DI TE +
Sbjct: 301 SVEVIEDENTARVIVDNSQLSLAIGKNGQNARLAAKLTGMRVDIKTENSSKDD 353
>gi|325000941|ref|ZP_08122053.1| transcription elongation factor NusA [Pseudonocardia sp. P1]
Length = 344
Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats.
Identities = 131/345 (37%), Positives = 194/345 (56%), Gaps = 25/345 (7%)
Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71
A+ +K I + VL + ++ A R G SD RV+I+ +TG + +
Sbjct: 7 ALRAIERDKEIPFETVLEAIETALLTAYRHTEGHHSDARVDIDRKTGVVRVLAR------ 60
Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131
A D G D P FGR+A +A+QVI+Q++R+AE +R Y
Sbjct: 61 -----------DASDAAEDGTPGPEFDD--TPEGFGRIAATTARQVIVQRLRDAEHERTY 107
Query: 132 LEFKDKVGEIISGTVKRVEYGN----VIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186
EF K GE+++G V+R N VIV+LG ++ V+ E + E + G+R++ Y+
Sbjct: 108 GEFSTKEGEVVAGIVQRDARANARGVVIVELGGGTEAVLPAAEQVPGEVYQHGERIRCYV 167
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
V R RG + LSRTHP + KLF +EVPE+ +G +++ +V+R+ G R+K+AV S+
Sbjct: 168 IGVARGPRGTTITLSRTHPNLVRKLFALEVPELVDGSIEIVSVAREAGFRSKIAVRSARP 227
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDV 305
++ GAC+G G+RV+ V+ EL EKIDI+ WS D FV NAL P+ V V + DE
Sbjct: 228 GLNAKGACIGPMGARVRGVMGELAGEKIDIIDWSEDPGEFVGNALSPSKVVSVTVLDERA 287
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350
V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ +
Sbjct: 288 RIARVVVPDFQLSLAIGKEGQNARLAARLTGWKIDIRSDADPRDP 332
>gi|50903880|gb|AAT87595.1| N utilization substance protein A [Streptococcus pyogenes
MGAS10394]
gi|71803212|gb|AAX72565.1| N utilization substance protein A [Streptococcus pyogenes MGAS6180]
gi|94548429|gb|ABF38475.1| N utilization substance protein A [Streptococcus pyogenes
MGAS10750]
Length = 396
Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats.
Identities = 130/367 (35%), Positives = 210/367 (57%), Gaps = 15/367 (4%)
Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62
+ E+L+ + EK ID+ ++ + +S++ A + YG +E N +T D +
Sbjct: 10 NIMSKEMLEAFRILEEEKHIDKADIIDAVTESLKSAYKRRYGQSESCVIEFNEKTADFQV 69
Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
F + EVVEEV + +ISLK A + ++G + +FGRVA QSAKQ I++K+
Sbjct: 70 FTVREVVEEVFDSRLEISLKDALAISSAYELGDKIRFEESVNEFGRVAAQSAKQTIMEKM 129
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182
R R+ + E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR+
Sbjct: 130 RRQMREVMFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRI 189
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
Y+Y V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV
Sbjct: 190 DVYVYKVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVR 249
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVI 288
S + ++D +G VG GS ++ V+++ E ID++ W D A F+
Sbjct: 250 SHNPNVDAIGTIVGRGGSNIKKVISKFHPKRVDAKTGLEIPVEENIDVIQWVDDPAEFIY 309
Query: 289 NALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347
NA+ PA V V+ DED+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 310 NAIAPAEVDMVLFDDEDLKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEY 369
Query: 348 SINRQKD 354
+
Sbjct: 370 DRLEAEK 376
>gi|94544550|gb|ABF34598.1| N utilization substance protein A [Streptococcus pyogenes
MGAS10270]
Length = 396
Score = 297 bits (760), Expect = 4e-78, Method: Composition-based stats.
Identities = 130/367 (35%), Positives = 210/367 (57%), Gaps = 15/367 (4%)
Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62
+ E+L+ + EK ID+ ++ + +S++ A + YG +E N +T D +
Sbjct: 10 NIMSKEMLEAFRILEEEKHIDKADIIDAVTESLKSAYKRRYGQSESCVIEFNEKTADFQV 69
Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
F + EVVEEV + +ISLK A + ++G + +FGRVA QSAKQ I++K+
Sbjct: 70 FTVREVVEEVFDSRLEISLKDALAISSAYELGDKIRFEESVNEFGRVAAQSAKQTIMEKM 129
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182
R R+ + E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR+
Sbjct: 130 RRQMREVMFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRI 189
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
Y+Y V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV
Sbjct: 190 DVYVYKVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVR 249
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVI 288
S + ++D +G VG GS ++ V+++ E ID++ W D A F+
Sbjct: 250 SHNPNVDAIGTIVGRGGSNIKKVISKFHPKRVDAKTGLEIPVEENIDVIQWVDDPAEFIY 309
Query: 289 NALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347
NA+ PA V V+ DED+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 310 NAIAPAEVDMVLFDDEDLKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEY 369
Query: 348 SINRQKD 354
+
Sbjct: 370 DRLEAEK 376
>gi|300812554|ref|ZP_07092971.1| transcription termination factor NusA [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
gi|300496427|gb|EFK31532.1| transcription termination factor NusA [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
Length = 403
Score = 297 bits (760), Expect = 4e-78, Method: Composition-based stats.
Identities = 140/370 (37%), Positives = 219/370 (59%), Gaps = 3/370 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ D + K I +DV++ M ++ A + YG ++ ++ N + GD + L
Sbjct: 4 EMLEAFDVLEKTKGIKQDVIVEAMKAALAAAYKKNYGLAENVEIDFNEKKGDFKVMALKT 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV++ ++SLK A + + ++G + + P DFGR A +AKQV++Q++REAE
Sbjct: 64 VVDEVQDDRVEVSLKDALAINRAYEVGDTIKFEVTPKDFGRTAAATAKQVVMQRLREAEN 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVI-RRDETISRENLRPGDRVKSYI 186
E+ E+++GTV+R + V V++GN + V+ + +TI E+ P DRV+ +
Sbjct: 124 AHIVNEYSQYEDELVTGTVERTDNRFVYVNIGNVEAVMDIKRDTIPGEHYNPQDRVRVLV 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
V + +G Q+ +SRT P + +LF EVPEI++G V++ +++R+ G R K+AV S+D
Sbjct: 184 TKVGADGKGAQIRVSRTAPDVVKRLFEQEVPEIFDGTVEIISIAREAGERTKIAVKSNDP 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE--D 304
+IDPVG CVG RGSRVQ VV EL E IDIV + D + ++ NAL PA V V ++ D
Sbjct: 244 NIDPVGTCVGPRGSRVQNVVNELGGENIDIVQYEEDPSDYIANALNPAEVIAVQFEDEDD 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+ VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E + + + T+
Sbjct: 304 ERKAFVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDESEVEDETEVAED 363
Query: 365 AINVDEIIAH 374
Sbjct: 364 QDLQQTEAEE 373
>gi|325688733|gb|EGD30742.1| N utilization substance protein A [Streptococcus sanguinis SK115]
Length = 420
Score = 296 bits (759), Expect = 4e-78, Method: Composition-based stats.
Identities = 136/414 (32%), Positives = 224/414 (54%), Gaps = 16/414 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E
Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y
Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + +
Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P
Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305
Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEMEA 365
Query: 353 KDFNERTQFFMQAINVDEIIAHLLVA-EGFADVEELACVKISEIASIEGFDEET 405
+ + I D + V+ D + A + E A IE EE
Sbjct: 366 ANELGGFAQEAEEILADADVLETEVSAAEATDFDAAAEETVLETAGIESEAEEL 419
>gi|251783184|ref|YP_002997489.1| transcription elongation factor NusA [Streptococcus dysgalactiae
subsp. equisimilis GGS_124]
gi|242391816|dbj|BAH82275.1| N utilization substance protein A [Streptococcus dysgalactiae
subsp. equisimilis GGS_124]
Length = 404
Score = 296 bits (759), Expect = 4e-78, Method: Composition-based stats.
Identities = 128/371 (34%), Positives = 210/371 (56%), Gaps = 15/371 (4%)
Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62
+ E+L+ + EK ID+ ++ + +S++ A + YG +E N +T D +
Sbjct: 18 NIMSKEMLEAFRILEEEKHIDKADIIDAVTESLKSAYKRRYGQAESCVIEFNEKTADFQV 77
Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
F + EVVEEV + +ISLK A + ++G + +FGRVA QSAKQ I++K+
Sbjct: 78 FTVREVVEEVFDSRLEISLKDALAISSAYELGDKIRFEESVNEFGRVAAQSAKQTIMEKM 137
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182
R R+ + E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR+
Sbjct: 138 RRQMREVTFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRI 197
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
+ Y+Y V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV
Sbjct: 198 EVYVYKVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVR 257
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVI 288
S + ++D +G VG GS ++ V+++ E ID++ W D A F+
Sbjct: 258 SHNPNVDAIGTIVGRGGSNIKKVISKFHPKRLDAKTGLEIPVEENIDVIQWVDDPAEFIY 317
Query: 289 NALRPAIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347
NA+ PA V V+ D+D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + +
Sbjct: 318 NAIAPAEVDMVLFDDDDLKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASDY 377
Query: 348 SINRQKDFNER 358
+
Sbjct: 378 DRLEAEKEAAM 388
>gi|322376136|ref|ZP_08050645.1| transcription termination factor NusA [Streptococcus sp. C300]
gi|321278904|gb|EFX55948.1| transcription termination factor NusA [Streptococcus sp. C300]
Length = 378
Score = 296 bits (759), Expect = 5e-78, Method: Composition-based stats.
Identities = 127/366 (34%), Positives = 212/366 (57%), Gaps = 15/366 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E
Sbjct: 4 EMLETFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 64 VVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y
Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + +
Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P
Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKSDRMIPVEENIDVIEWVADPAEFIYNAIAP 303
Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E +
Sbjct: 304 AEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMEE 363
Query: 353 KDFNER 358
+
Sbjct: 364 AGQVDY 369
>gi|255530056|ref|YP_003090428.1| transcription elongation factor NusA [Pedobacter heparinus DSM
2366]
gi|255343040|gb|ACU02366.1| transcription termination factor NusA [Pedobacter heparinus DSM
2366]
Length = 411
Score = 296 bits (759), Expect = 5e-78, Method: Composition-based stats.
Identities = 130/395 (32%), Positives = 229/395 (57%), Gaps = 10/395 (2%)
Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77
K+IDR V+SV+ + + R YGT + V +NP+ GD+ ++R +V+E+ E+
Sbjct: 17 KNIDRPTVISVLEEVFRSMLRKKYGTDENCDVIVNPDNGDLEIWRTRKVMEDGFSEDDDL 76
Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137
+I L + DP +++G + + FGR A+ +A+Q ++ KV E E+D + ++KD+
Sbjct: 77 EIELAEVKQLDPDMEVGDDYIEQITLESFGRRAILAARQTLVSKVLELEKDEIFKKYKDR 136
Query: 138 VGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196
VGEI++G V + + +++D ++ ++ + E I + + GD V++ I V P
Sbjct: 137 VGEIVTGEVYQVWKKETLVLDDEGNELMMPKTEQIPADYFKKGDTVRAVILKVDMVNATP 196
Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256
++++SR P+F+ +LF +EVPEI++G++ +K + R+PG RAK+AV S D IDPVGACVG
Sbjct: 197 KIIISRIAPEFLQRLFEIEVPEIFDGLITIKKIVREPGERAKVAVESYDDRIDPVGACVG 256
Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316
M+GSR+ +V EL++E ID++ ++ + + ++ AL PA +T + LD++ V + +Q
Sbjct: 257 MKGSRIHGIVRELKNENIDVINFTNNISLYITRALSPAKITSIKLDDETKHASVYLKPDQ 316
Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376
+SLAIGR G N++LA +LTG+ ID+ E + + +D I L
Sbjct: 317 VSLAIGRGGHNIKLAGKLTGYEIDVYREAGEEDEDVDIEE-------FSDEIDSWIIDEL 369
Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411
A G + + + + E+ +EET E+
Sbjct: 370 KAIGCDTAKSVLALSVDELVKRTDLEEETIKEVMS 404
>gi|313158663|gb|EFR58052.1| transcription termination factor NusA [Alistipes sp. HGB5]
Length = 410
Score = 296 bits (759), Expect = 5e-78, Method: Composition-based stats.
Identities = 139/419 (33%), Positives = 233/419 (55%), Gaps = 12/419 (2%)
Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
+ L L+ K+ID+ ++ V+ D + A + Y T + V INPE GD+ ++
Sbjct: 1 MDNLNLISNFAEFKELKNIDKSTMIGVLEDVFRHALQKQYETDENFDVIINPEKGDLEIW 60
Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
R VVE+ VE+ QI++ + DP+ +IG +D + FGR AV S +Q + +
Sbjct: 61 RNRTVVEDGAVEDPNAQIAVSEVKAIDPTYEIGDEYADEIKLSSFGRRAVLSLRQNLASR 120
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNV-IVDLGNSDGVIRRDETISRENLRPGD 180
+ + E+ Y ++ +KVGEI++G V +V V I+D ++ ++ + E I + R GD
Sbjct: 121 ILDLEKASLYEKYSEKVGEIVTGEVYQVWKKEVLILDDEENELILPKAEQIPNDFYRKGD 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
+K+ + V P+++LSRT QF+ +LF EVPEI++G++ +K + R PG RAK+A
Sbjct: 181 TIKAIVKSVEMNNNQPRIILSRTANQFLERLFEQEVPEIFDGLITIKKIVRIPGERAKVA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S D IDPVGACVGM+GSR+ ++V ELR+E ID+V ++ + + + AL PA ++ +
Sbjct: 241 VESYDERIDPVGACVGMKGSRIYSIVKELRNENIDVVNYTANPSLMIQRALNPAKISSIT 300
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DE+ V + +Q+SLAIG+ G N+RL+ LTG+ ID+ E E+ +F +
Sbjct: 301 IDEEKMTASVYLKPDQVSLAIGKGGLNIRLSKMLTGYDIDVYREVEEEDVALTEFAD--- 357
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+D I L + G + + + + EIA+ + E A ++ + E
Sbjct: 358 ------EIDGWIIDALKSVGCDSAKSVLELPVEEIAARADLELEQAQKVVAILKAEFEE 410
>gi|327462402|gb|EGF08727.1| N utilization substance protein A [Streptococcus sanguinis SK1057]
Length = 420
Score = 296 bits (758), Expect = 5e-78, Method: Composition-based stats.
Identities = 135/414 (32%), Positives = 225/414 (54%), Gaps = 16/414 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E
Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y
Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + +
Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P
Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305
Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEMEA 365
Query: 353 KDFNERTQFFMQAINVDEIIAHLLVA-EGFADVEELACVKISEIASIEGFDEET 405
+ + I D + V+ D + +A + E A +E EE
Sbjct: 366 ANELGGFAQEAEEILADAAVLETEVSGAEATDFDAVAEETVLETAGLESEAEEL 419
>gi|307707652|ref|ZP_07644133.1| transcription termination factor NusA [Streptococcus mitis NCTC
12261]
gi|307616365|gb|EFN95557.1| transcription termination factor NusA [Streptococcus mitis NCTC
12261]
Length = 378
Score = 296 bits (758), Expect = 5e-78, Method: Composition-based stats.
Identities = 127/360 (35%), Positives = 211/360 (58%), Gaps = 15/360 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E
Sbjct: 4 EMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 64 VVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y
Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + +
Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P
Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKSDRMVPIEENIDVIEWVADPAEFIYNAIAP 303
Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E +
Sbjct: 304 AEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMEE 363
>gi|324994121|gb|EGC26035.1| N utilization substance protein A [Streptococcus sanguinis SK678]
Length = 420
Score = 296 bits (758), Expect = 6e-78, Method: Composition-based stats.
Identities = 136/414 (32%), Positives = 224/414 (54%), Gaps = 16/414 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E
Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y
Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + +
Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P
Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305
Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEMEA 365
Query: 353 KDFNERTQFFMQAINVDEIIAHLLVA-EGFADVEELACVKISEIASIEGFDEET 405
+ + I D + V+ D + A + E A IE EE
Sbjct: 366 ANELGGFAQEAEEILADAAVLETEVSAAEATDFDAAAEETVLETAGIESEAEEL 419
>gi|327472754|gb|EGF18181.1| N utilization substance protein A [Streptococcus sanguinis SK408]
Length = 420
Score = 296 bits (758), Expect = 6e-78, Method: Composition-based stats.
Identities = 135/414 (32%), Positives = 225/414 (54%), Gaps = 16/414 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E
Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y
Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + +
Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P
Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305
Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEMEA 365
Query: 353 KDFNERTQFFMQAINVDEIIAHLLVA-EGFADVEELACVKISEIASIEGFDEET 405
+ + I D + V+ D + +A + E A +E EE
Sbjct: 366 ANELGGFAQEAEEILADADVLETEVSAAEATDFDAVAEETVLETAGLESEAEEL 419
>gi|309799813|ref|ZP_07694020.1| transcription termination factor NusA [Streptococcus infantis
SK1302]
gi|308116529|gb|EFO53998.1| transcription termination factor NusA [Streptococcus infantis
SK1302]
Length = 378
Score = 296 bits (758), Expect = 6e-78, Method: Composition-based stats.
Identities = 127/370 (34%), Positives = 214/370 (57%), Gaps = 15/370 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E
Sbjct: 4 EMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 64 VVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPGEFGRVAAQSAKQTIMEKMRKQTR 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y
Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + +
Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P
Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKSDRMVPIEENIDVIEWVADPAEFIYNAIAP 303
Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 304 AEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMEA 363
Query: 353 KDFNERTQFF 362
+ ++ +
Sbjct: 364 AEQADQVETD 373
>gi|322377700|ref|ZP_08052190.1| transcription termination factor NusA [Streptococcus sp. M334]
gi|321281465|gb|EFX58475.1| transcription termination factor NusA [Streptococcus sp. M334]
Length = 378
Score = 296 bits (758), Expect = 6e-78, Method: Composition-based stats.
Identities = 127/360 (35%), Positives = 211/360 (58%), Gaps = 15/360 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E
Sbjct: 4 EMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 64 VVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y
Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + +
Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P
Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKNDRMVPIEENIDVIEWVADPAEFIYNAIAP 303
Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E +
Sbjct: 304 AEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMEE 363
>gi|205373420|ref|ZP_03226224.1| transcription elongation factor NusA [Bacillus coahuilensis m4-4]
Length = 286
Score = 296 bits (758), Expect = 6e-78, Method: Composition-based stats.
Identities = 104/267 (38%), Positives = 176/267 (65%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL D + EK I RD+++ + ++ A + + ++RV+++ E G I +F E
Sbjct: 4 ELLDALDYLEKEKGIARDILIDAIEAALVSAYKRNFNQAQNVRVDLHQENGTIRVFARKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
+V++V + +IS++ A+ P ++G +V + P DFGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 IVDQVFDPRLEISIEDAKQIHPGYEVGDIVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF D+ +I++G V+R++ + V LG + ++ E + E+ +P DR+K ++
Sbjct: 124 GIIYSEFIDREEDIMTGIVQRLDNRYIYVALGKIEALLPISEQMPNESYKPHDRIKVFLT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SRTHP + +LF +EVPEI++G V++K+VSR+ G R+K++V + +
Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEIEVPEIFDGTVEIKSVSREAGDRSKISVHAENPE 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKI 274
+DPVGACVG +G+RVQA+V EL+ EK+
Sbjct: 244 VDPVGACVGSKGTRVQAIVNELKGEKL 270
>gi|257439271|ref|ZP_05615026.1| transcription termination factor NusA [Faecalibacterium prausnitzii
A2-165]
gi|257198146|gb|EEU96430.1| transcription termination factor NusA [Faecalibacterium prausnitzii
A2-165]
Length = 358
Score = 296 bits (758), Expect = 7e-78, Method: Composition-based stats.
Identities = 138/355 (38%), Positives = 209/355 (58%), Gaps = 7/355 (1%)
Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLLEVV--EE 71
+ +E+ I + ++ + +I A + Y ++ VEI+P++G ++ + VV E+
Sbjct: 1 MLEHERGITAEYLIEKIKAAIVIAVKKNYEVEDDNVLVEIDPDSGKFNVALVQNVVADED 60
Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131
+ +I + A+ S ++G V PL DFGR+A Q+AK VI Q +REAER +Q
Sbjct: 61 WYDEHAEIGITEAQKIRKSYEVGDRVVTPLKTKDFGRIAAQTAKHVIRQGIREAERSQQL 120
Query: 132 LEFKDKVGEIISGTVKRVEYGNVIV--DLGNS-DGVIRRDETISRENLRPGDRVKSYIYD 188
E + + +II TV RV+ IV DLG + ++ R+E + E G ++ Y+ D
Sbjct: 121 SEIQSRAHDIIQATVTRVDNEKGIVALDLGKGGEAILPRNEQVPGETYTEGQTLQVYVVD 180
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V +RG +V++SRTHP + +LF +EVPEIY+G V+VKA+SR+ G+R K+AV+S D+++
Sbjct: 181 VVSGERGARVMISRTHPGLVKRLFELEVPEIYDGTVEVKAISREAGARTKMAVWSKDANV 240
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE-DVGR 307
+PV AC+G G RV AVV +L EKIDIV WS D + F+ AL PA V KV L +
Sbjct: 241 NPVSACIGPHGDRVAAVVEKLGGEKIDIVKWSEDVSEFISAALSPAKVLKVELLPGETRS 300
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
V VP +QLSLAIG +GQN RL ++LTG+ IDI E ++ +
Sbjct: 301 CRVTVPDQQLSLAIGNKGQNARLCARLTGYNIDIRPESGYYGEDEEPKAAEPKTE 355
>gi|256832250|ref|YP_003160977.1| NusA antitermination factor [Jonesia denitrificans DSM 20603]
gi|256685781|gb|ACV08674.1| NusA antitermination factor [Jonesia denitrificans DSM 20603]
Length = 354
Score = 296 bits (757), Expect = 7e-78, Method: Composition-based stats.
Identities = 134/345 (38%), Positives = 206/345 (59%), Gaps = 10/345 (2%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ + E+ I DV+L + ++ A + ++ RVEI+ +TG + ++
Sbjct: 5 MAALRMLEREREISLDVLLEAIEQALALAYQRTPDSLRHARVEIDRKTGQVVVWAR---- 60
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
EE+E ++ + A P ++G P DFG VA +A+QVI Q++R+ E D+
Sbjct: 61 EEIEREPARVDDEGA-YVPPVRELGD--EFDHTPKDFGHVATATARQVIFQRMRDVEDDQ 117
Query: 130 QYLEFKDKVGEIISGTVKRV-EYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYIY 187
+FKDK G ++SG +++ V VDLGN + V+ E + E+ R G RV++Y+
Sbjct: 118 VLGQFKDKEGHVVSGIIQQAAHPRAVNVDLGNGVEAVLPEHEQVPGEDYRHGARVRAYVV 177
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
+V R+ +GP + LSRTHP + +LF MEVPE+ +G V++ A++R+ G R K+AV S+
Sbjct: 178 EVARKAKGPSITLSRTHPNLVRRLFEMEVPEVADGAVEIIALAREAGHRTKMAVTSTIPG 237
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVG 306
++P GAC+G G RV+AV+ EL EKIDIV ++ D A F+ +AL PA V+ V + DE
Sbjct: 238 LNPKGACIGPMGQRVRAVMAELGGEKIDIVDYTEDPAQFIASALSPATVSSVSILDERAR 297
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351
VIVP QLSLAIG+ GQN RLA++LTGW IDI ++ +D
Sbjct: 298 MARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIRSDADDQGAE 342
>gi|257468347|ref|ZP_05632441.1| transcription elongation factor NusA [Fusobacterium ulcerans ATCC
49185]
gi|317062620|ref|ZP_07927105.1| transcription elongation factor NusA [Fusobacterium ulcerans ATCC
49185]
gi|313688296|gb|EFS25131.1| transcription elongation factor NusA [Fusobacterium ulcerans ATCC
49185]
Length = 361
Score = 296 bits (757), Expect = 7e-78, Method: Composition-based stats.
Identities = 136/353 (38%), Positives = 214/353 (60%), Gaps = 3/353 (0%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
M S + L+ D + EK I ++ +L + ++ A + +G ++ VEIN ETGD+
Sbjct: 1 MKSKDAKVFLEALDELEREKGISKENLLLTVEQALLAAYKKNHGEEENVEVEINRETGDV 60
Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
L+ + VVE ++ + +ISL A++ + +G +V + +F R A+Q+ KQ++
Sbjct: 61 KLYEVKTVVETEDLYDAAIEISLDDAQEIKKRVKVGDIVRIEINCEEFRRNAIQNGKQIV 120
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177
IQKVREAER Y FK K +II+G ++R E N+ V+ + ++ E + R
Sbjct: 121 IQKVREAERQYIYDRFKGKENDIINGIIRRIDEKKNIFVEFDGIEAILPTTEQSPADTYR 180
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
G+R+K ++ +V + + P++++SR H + KLF +E+PEI +G++++KAV+R+ GSRA
Sbjct: 181 VGERLKVFLAEVEKTNKFPKIVISRKHEGLLKKLFELEIPEITSGLIEIKAVAREAGSRA 240
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV+S+D +ID VGAC+G +G R++ +V EL EKIDIV+W FV L PA V
Sbjct: 241 KVAVYSADPNIDTVGACIGQKGLRIKNIVNELNGEKIDIVIWKESVEEFVSAVLSPAKVK 300
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350
V + ED VIV QLSLAIG+ GQN RLA++LTG +DI TE +
Sbjct: 301 SVEVIEDENTARVIVDNSQLSLAIGKNGQNARLAAKLTGMRVDIKTENSSKED 353
>gi|157151698|ref|YP_001449859.1| transcription elongation factor NusA [Streptococcus gordonii str.
Challis substr. CH1]
gi|157076492|gb|ABV11175.1| transcription termination factor NusA [Streptococcus gordonii str.
Challis substr. CH1]
Length = 413
Score = 296 bits (757), Expect = 7e-78, Method: Composition-based stats.
Identities = 126/410 (30%), Positives = 219/410 (53%), Gaps = 15/410 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L + +K I ++ ++ + +S++ A R YG ++ + + GD ++ + E
Sbjct: 4 EMLDAFRILEEDKGIKKEDIIDAVKESLRSAYRRRYGQADSALIDFDEKKGDFHVYTVRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + ++G + P++FGRVA QSAKQ I++K+R+ R
Sbjct: 64 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPVEFGRVAAQSAKQTIMEKMRKQTR 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y
Sbjct: 124 TITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEIFASHDRIEVFVY 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + +
Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P
Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPAKYDAKSDRMIPVEENIDVIEWVADPAEFIYNAIAP 303
Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 304 AEVDQVIFNAEDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMEA 363
Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD 402
+ + + ++ + ++ A E + + D
Sbjct: 364 ANELGGFGEVAEEVVYEDDANLTYTDQAMEEMAAAALATDLEESEVTELD 413
>gi|326791500|ref|YP_004309321.1| NusA antitermination factor [Clostridium lentocellum DSM 5427]
gi|326542264|gb|ADZ84123.1| NusA antitermination factor [Clostridium lentocellum DSM 5427]
Length = 376
Score = 296 bits (757), Expect = 8e-78, Method: Composition-based stats.
Identities = 130/364 (35%), Positives = 206/364 (56%), Gaps = 28/364 (7%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDIS 61
E + D +A K I+++ ++ + SI+ A + +G +I++ I+ +TGD+
Sbjct: 2 NQEFIMAIDQIAKSKGINKEKLIDAIKQSIEVACKKHFGISTNGKQNIKINIDEKTGDVK 61
Query: 62 LFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119
+F VV EEV N ++ + A++ + + + ++ + P +FGR+A Q+AKQV+I
Sbjct: 62 VFAAKTVVPDEEVTNELLEVGITEAQNLNRLVQLDDIIDIEITPRNFGRIAAQNAKQVVI 121
Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG 179
QK++EAER Y E+ K+ +I+ G V R E IV L ++ + E + +N
Sbjct: 122 QKIKEAERQMVYEEYSVKLNDIVKGKVLRREKNGYIVQLDFTEASLPSTEAMPNDNFDEQ 181
Query: 180 DRVK--------SYIYDVRREQRGP------------QVLLSRTHPQFMVKLFHMEVPEI 219
+ Y+ +V+ + QV++SRTHP+ + +LF EV EI
Sbjct: 182 MEMNDGIGTYKAFYLLNVKDFNKNENKLDGKSKNAGAQVIVSRTHPELVKRLFEQEVVEI 241
Query: 220 YNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVW 279
+G V +K+++R+ GSR K+AV+S+D +DPVGACVG +G R+ +V EL EKID+V W
Sbjct: 242 KDGTVVIKSIAREAGSRTKIAVYSNDPLVDPVGACVGEKGKRINNIVQELNGEKIDVVHW 301
Query: 280 SPDSATFVINALRPAIVTKVVLDED--VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337
S D F+ AL PA V V L+E +VIVP L+LAIG+ GQNVRLA++L G+
Sbjct: 302 SEDPKEFIREALSPAKVIDVELEETEGERNAKVIVPSHILTLAIGKGGQNVRLAAKLCGF 361
Query: 338 TIDI 341
IDI
Sbjct: 362 KIDI 365
>gi|331265777|ref|YP_004325407.1| transcription termination-antitermination factor [Streptococcus
oralis Uo5]
gi|326682449|emb|CBZ00066.1| transcription termination-antitermination factor [Streptococcus
oralis Uo5]
Length = 374
Score = 296 bits (757), Expect = 8e-78, Method: Composition-based stats.
Identities = 126/365 (34%), Positives = 211/365 (57%), Gaps = 15/365 (4%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + EV
Sbjct: 1 MLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVREV 60
Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
V+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 61 VDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTRA 120
Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y
Sbjct: 121 ITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVYK 180
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + ++
Sbjct: 181 VEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPNV 240
Query: 249 DPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRPA 294
D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ PA
Sbjct: 241 DAIGTIVGRGGANIKKITSKFHPARYDAKSDRMIPVEENIDVIEWVADPAEFIYNAIAPA 300
Query: 295 IVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353
V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E +
Sbjct: 301 EVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMEEA 360
Query: 354 DFNER 358
+
Sbjct: 361 GQVDY 365
>gi|317051740|ref|YP_004112856.1| transcription termination factor NusA [Desulfurispirillum indicum
S5]
gi|316946824|gb|ADU66300.1| transcription termination factor NusA [Desulfurispirillum indicum
S5]
Length = 382
Score = 296 bits (757), Expect = 8e-78, Method: Composition-based stats.
Identities = 144/378 (38%), Positives = 226/378 (59%), Gaps = 3/378 (0%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+ E + + + EK++D+ +L + ++ A + Y +I I+ ETG +
Sbjct: 2 KNEFISSIEQLCREKNLDKTTLLEAIETAVVAALKRKYSQECEIFFRIDDETGVFDVSFE 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
EVVE+V + + +ISL A +G + P+ R+ Q+AKQ+I+Q+VR+
Sbjct: 62 KEVVEKVRDKSLEISLTDAIKIQEDAKVGQRIHVPIDIQTIARITAQTAKQIIMQRVRDV 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
E+ E+++++GE+I V+RVE V++ +G DGV+ + + + + + GD VK+
Sbjct: 122 EKASLMDEYRERIGELILAPVERVEARRVVLSMGECDGVLLQSDILPTDTYKQGDVVKAV 181
Query: 186 IYDVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
I DV+ +R Q+LLSRT QF+++LF EVPEI + V +KAV+R+ GSR+K+AV +
Sbjct: 182 IRDVQLSRRGDVQILLSRTSEQFLLQLFREEVPEISSSNVVIKAVAREGGSRSKIAVKAL 241
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
S +DPVGACVG++GSRV AVV E+ EKIDI+ WS + A F+ NAL PA V K+ + ++
Sbjct: 242 KSGMDPVGACVGVKGSRVSAVVEEIGGEKIDIIEWSDEPALFICNALNPAEVVKMDIYDE 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN--RQKDFNERTQFF 362
G V+VP+ QLSLAIGR+GQN RLA++LT W IDI +EEE + R+
Sbjct: 302 EGVAVVVVPERQLSLAIGRKGQNARLAAKLTNWKIDIYSEEEYEAYLRGETPQARRSSDP 361
Query: 363 MQAINVDEIIAHLLVAEG 380
Q++ + + L E
Sbjct: 362 TQSVQIQPVANSSLAEEQ 379
>gi|149002224|ref|ZP_01827166.1| transcription elongation factor NusA [Streptococcus pneumoniae
SP14-BS69]
gi|168485664|ref|ZP_02710172.1| transcription termination factor NusA [Streptococcus pneumoniae
CDC1087-00]
gi|147759539|gb|EDK66530.1| transcription elongation factor NusA [Streptococcus pneumoniae
SP14-BS69]
gi|183571232|gb|EDT91760.1| transcription termination factor NusA [Streptococcus pneumoniae
CDC1087-00]
Length = 378
Score = 296 bits (757), Expect = 8e-78, Method: Composition-based stats.
Identities = 127/360 (35%), Positives = 210/360 (58%), Gaps = 15/360 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E
Sbjct: 4 EMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 64 VVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y
Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + +
Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P
Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKNDRMVPIEENIDVIEWVADPAEFIYNAIAP 303
Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 304 AEVDQVIFDESDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMED 363
>gi|332366408|gb|EGJ44159.1| N utilization substance protein A [Streptococcus sanguinis SK355]
Length = 417
Score = 296 bits (757), Expect = 8e-78, Method: Composition-based stats.
Identities = 134/413 (32%), Positives = 224/413 (54%), Gaps = 17/413 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + +K I ++ ++ + +S++ A R YG + +E + ++GD ++ + E
Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSVAIEFDEKSGDFRVYTVRE 65
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y
Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + +
Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P
Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305
Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 306 AEVDQVIFNEEDNKRALVVVPDSKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEMEA 365
Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEET 405
+ + I D + + D + A + E A +E EE
Sbjct: 366 ANELGGFAQEAEEILADADVLETEFSA--TDFDAAAEETVLETAGLESEAEEL 416
>gi|307702469|ref|ZP_07639424.1| transcription elongation protein nusA [Streptococcus oralis ATCC
35037]
gi|307623963|gb|EFO02945.1| transcription elongation protein nusA [Streptococcus oralis ATCC
35037]
Length = 374
Score = 296 bits (757), Expect = 9e-78, Method: Composition-based stats.
Identities = 126/365 (34%), Positives = 211/365 (57%), Gaps = 15/365 (4%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + EV
Sbjct: 1 MLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVREV 60
Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
V+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 61 VDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTRA 120
Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y
Sbjct: 121 ITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVYK 180
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + ++
Sbjct: 181 VEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPNV 240
Query: 249 DPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRPA 294
D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ PA
Sbjct: 241 DAIGTIVGRGGANIKKITSKFHPARYDAKSDRMIPVEENIDVIEWVADPAEFIYNAIAPA 300
Query: 295 IVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353
V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E +
Sbjct: 301 EVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMEEA 360
Query: 354 DFNER 358
+
Sbjct: 361 GQVDY 365
>gi|325695172|gb|EGD37073.1| N utilization substance protein A [Streptococcus sanguinis SK150]
Length = 420
Score = 296 bits (757), Expect = 9e-78, Method: Composition-based stats.
Identities = 135/414 (32%), Positives = 224/414 (54%), Gaps = 16/414 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E
Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y
Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + +
Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P
Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305
Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEMEA 365
Query: 353 KDFNERTQFFMQAINVDEIIAHLLVA-EGFADVEELACVKISEIASIEGFDEET 405
+ + I D + V+ D + A + E A +E EE
Sbjct: 366 ANELGGFAQEAEEILADADVLETEVSAAEATDFDAAAEETVVETAGLESEAEEL 419
>gi|15900465|ref|NP_345069.1| transcription elongation factor NusA [Streptococcus pneumoniae
TIGR4]
gi|111657275|ref|ZP_01408041.1| hypothetical protein SpneT_02001513 [Streptococcus pneumoniae
TIGR4]
gi|148983931|ref|ZP_01817250.1| transcription elongation factor NusA [Streptococcus pneumoniae
SP3-BS71]
gi|148990071|ref|ZP_01821325.1| transcription elongation factor NusA [Streptococcus pneumoniae
SP6-BS73]
gi|148992337|ref|ZP_01822060.1| transcription elongation factor NusA [Streptococcus pneumoniae
SP9-BS68]
gi|148998226|ref|ZP_01825695.1| transcription elongation factor NusA [Streptococcus pneumoniae
SP11-BS70]
gi|149005663|ref|ZP_01829402.1| transcription elongation factor NusA [Streptococcus pneumoniae
SP18-BS74]
gi|149012573|ref|ZP_01833570.1| transcription elongation factor NusA [Streptococcus pneumoniae
SP19-BS75]
gi|149021508|ref|ZP_01835563.1| transcription elongation factor NusA [Streptococcus pneumoniae
SP23-BS72]
gi|168482793|ref|ZP_02707745.1| transcription termination factor NusA [Streptococcus pneumoniae
CDC1873-00]
gi|168488244|ref|ZP_02712443.1| transcription termination factor NusA [Streptococcus pneumoniae
SP195]
gi|168490557|ref|ZP_02714700.1| transcription termination factor NusA [Streptococcus pneumoniae
CDC0288-04]
gi|168576545|ref|ZP_02722419.1| transcription termination factor NusA [Streptococcus pneumoniae
MLV-016]
gi|169834095|ref|YP_001694040.1| transcription elongation factor NusA [Streptococcus pneumoniae
Hungary19A-6]
gi|182683486|ref|YP_001835233.1| transcription elongation factor NusA [Streptococcus pneumoniae
CGSP14]
gi|221231386|ref|YP_002510538.1| N utilization substance protein A [Streptococcus pneumoniae ATCC
700669]
gi|225854094|ref|YP_002735606.1| transcription elongation factor NusA [Streptococcus pneumoniae JJA]
gi|225856263|ref|YP_002737774.1| transcription elongation factor NusA [Streptococcus pneumoniae
P1031]
gi|225858391|ref|YP_002739901.1| transcription elongation factor NusA [Streptococcus pneumoniae
70585]
gi|225860558|ref|YP_002742067.1| transcription elongation factor NusA [Streptococcus pneumoniae
Taiwan19F-14]
gi|237650175|ref|ZP_04524427.1| transcription elongation factor NusA [Streptococcus pneumoniae CCRI
1974]
gi|237821775|ref|ZP_04597620.1| transcription elongation factor NusA [Streptococcus pneumoniae CCRI
1974M2]
gi|298230907|ref|ZP_06964588.1| transcription elongation factor NusA [Streptococcus pneumoniae str.
Canada MDR_19F]
gi|298255627|ref|ZP_06979213.1| transcription elongation factor NusA [Streptococcus pneumoniae str.
Canada MDR_19A]
gi|298502347|ref|YP_003724287.1| transcription elongation factor NusA [Streptococcus pneumoniae
TCH8431/19A]
gi|303255252|ref|ZP_07341325.1| transcription elongation factor NusA [Streptococcus pneumoniae
BS455]
gi|303260042|ref|ZP_07346015.1| transcription elongation factor NusA [Streptococcus pneumoniae
SP-BS293]
gi|303261226|ref|ZP_07347174.1| transcription elongation factor NusA [Streptococcus pneumoniae
SP14-BS292]
gi|303263891|ref|ZP_07349812.1| transcription elongation factor NusA [Streptococcus pneumoniae
BS397]
gi|303267073|ref|ZP_07352944.1| transcription elongation factor NusA [Streptococcus pneumoniae
BS457]
gi|303269288|ref|ZP_07355062.1| transcription elongation factor NusA [Streptococcus pneumoniae
BS458]
gi|307126756|ref|YP_003878787.1| transcription termination factor NusA [Streptococcus pneumoniae
670-6B]
gi|14972027|gb|AAK74709.1| N utilization substance protein A [Streptococcus pneumoniae TIGR4]
gi|147755869|gb|EDK62913.1| transcription elongation factor NusA [Streptococcus pneumoniae
SP11-BS70]
gi|147762603|gb|EDK69563.1| transcription elongation factor NusA [Streptococcus pneumoniae
SP18-BS74]
gi|147763378|gb|EDK70315.1| transcription elongation factor NusA [Streptococcus pneumoniae
SP19-BS75]
gi|147924078|gb|EDK75190.1| transcription elongation factor NusA [Streptococcus pneumoniae
SP3-BS71]
gi|147924597|gb|EDK75684.1| transcription elongation factor NusA [Streptococcus pneumoniae
SP6-BS73]
gi|147928963|gb|EDK79975.1| transcription elongation factor NusA [Streptococcus pneumoniae
SP9-BS68]
gi|147930204|gb|EDK81189.1| transcription elongation factor NusA [Streptococcus pneumoniae
SP23-BS72]
gi|168996597|gb|ACA37209.1| transcription termination factor NusA [Streptococcus pneumoniae
Hungary19A-6]
gi|172043571|gb|EDT51617.1| transcription termination factor NusA [Streptococcus pneumoniae
CDC1873-00]
gi|182628820|gb|ACB89768.1| transcription elongation factor NusA [Streptococcus pneumoniae
CGSP14]
gi|183573000|gb|EDT93528.1| transcription termination factor NusA [Streptococcus pneumoniae
SP195]
gi|183574829|gb|EDT95357.1| transcription termination factor NusA [Streptococcus pneumoniae
CDC0288-04]
gi|183577711|gb|EDT98239.1| transcription termination factor NusA [Streptococcus pneumoniae
MLV-016]
gi|220673846|emb|CAR68349.1| putative putative N utilization substance protein A [Streptococcus
pneumoniae ATCC 700669]
gi|225720770|gb|ACO16624.1| transcription termination factor NusA [Streptococcus pneumoniae
70585]
gi|225723031|gb|ACO18884.1| transcription termination factor NusA [Streptococcus pneumoniae
JJA]
gi|225725477|gb|ACO21329.1| transcription termination factor NusA [Streptococcus pneumoniae
P1031]
gi|225727542|gb|ACO23393.1| transcription termination factor NusA [Streptococcus pneumoniae
Taiwan19F-14]
gi|298237942|gb|ADI69073.1| transcription elongation factor NusA [Streptococcus pneumoniae
TCH8431/19A]
gi|301793757|emb|CBW36144.1| putative putative N utilization substance protein A [Streptococcus
pneumoniae INV104]
gi|301799610|emb|CBW32165.1| putative putative N utilization substance protein A [Streptococcus
pneumoniae OXC141]
gi|301801434|emb|CBW34121.1| putative putative N utilization substance protein A [Streptococcus
pneumoniae INV200]
gi|302597793|gb|EFL64866.1| transcription elongation factor NusA [Streptococcus pneumoniae
BS455]
gi|302637360|gb|EFL67847.1| transcription elongation factor NusA [Streptococcus pneumoniae
SP14-BS292]
gi|302638737|gb|EFL69199.1| transcription elongation factor NusA [Streptococcus pneumoniae
SP-BS293]
gi|302641185|gb|EFL71558.1| transcription elongation factor NusA [Streptococcus pneumoniae
BS458]
gi|302643401|gb|EFL73677.1| transcription elongation factor NusA [Streptococcus pneumoniae
BS457]
gi|302646296|gb|EFL76522.1| transcription elongation factor NusA [Streptococcus pneumoniae
BS397]
gi|306483818|gb|ADM90687.1| transcription termination factor NusA [Streptococcus pneumoniae
670-6B]
gi|327390293|gb|EGE88634.1| transcription termination factor NusA [Streptococcus pneumoniae
GA04375]
gi|332074367|gb|EGI84843.1| transcription termination factor NusA [Streptococcus pneumoniae
GA17570]
gi|332076389|gb|EGI86852.1| transcription termination factor NusA [Streptococcus pneumoniae
GA41301]
gi|332202437|gb|EGJ16506.1| transcription termination factor NusA [Streptococcus pneumoniae
GA41317]
gi|332204573|gb|EGJ18638.1| transcription termination factor NusA [Streptococcus pneumoniae
GA47901]
Length = 378
Score = 295 bits (756), Expect = 9e-78, Method: Composition-based stats.
Identities = 127/360 (35%), Positives = 210/360 (58%), Gaps = 15/360 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E
Sbjct: 4 EMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 64 VVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y
Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + +
Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P
Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKNDRMVPIEENIDVIEWVADPAEFIYNAIAP 303
Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 304 AEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMED 363
>gi|332362937|gb|EGJ40726.1| N utilization substance protein A [Streptococcus sanguinis SK49]
Length = 420
Score = 295 bits (756), Expect = 9e-78, Method: Composition-based stats.
Identities = 135/414 (32%), Positives = 224/414 (54%), Gaps = 16/414 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E
Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPTEFGRVAAQSAKQTIMEKMRKQTR 125
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y
Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + +
Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P
Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305
Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEMEA 365
Query: 353 KDFNERTQFFMQAINVDEIIAHLLVA-EGFADVEELACVKISEIASIEGFDEET 405
+ + I D + V+ D + A + E A +E EE
Sbjct: 366 ANELGGFAQEAEEILADADVLETEVSAAEATDFDAAAEETVLETAGLESEAEEL 419
>gi|332670044|ref|YP_004453052.1| transcription termination factor NusA [Cellulomonas fimi ATCC 484]
gi|332339082|gb|AEE45665.1| transcription termination factor NusA [Cellulomonas fimi ATCC 484]
Length = 350
Score = 295 bits (756), Expect = 9e-78, Method: Composition-based stats.
Identities = 127/352 (36%), Positives = 204/352 (57%), Gaps = 27/352 (7%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+Q + E+ I DV+++ + ++ A G+ RVE++ +G ++++
Sbjct: 5 MQALRLLEREREISLDVLVAAIEQALLSAYHRTPGSHQRARVEVDRRSGHVTVW------ 58
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLP-----PMDFGRVAVQSAKQVIIQKVRE 124
AR+ P + G V +P P FGR+A +A+QVI+Q++R+
Sbjct: 59 --------------AREPAPVGEDGRPVEVDMPEFDDTPDGFGRIATATARQVIVQRLRD 104
Query: 125 AERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183
AE D+ F+ K GE++ G +++ + V+VD+G ++ V+ + E + E G+R++
Sbjct: 105 AEDDQVLGTFRGKEGEVLGGVIQQGRDPRTVLVDVGGTEAVLPQHEQVPGEEYVHGERLR 164
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+Y+ +V R RGPQV LSRTHP + +LF +EVPE+ +G V++ A++R+ G R K+AV +
Sbjct: 165 AYVLEVARGPRGPQVTLSRTHPNLVRRLFALEVPEVADGTVEITAMAREAGHRTKMAVRA 224
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LD 302
+ + ++ GAC+G G RV+AV+ EL EKIDIV S D A + +AL PA V V +D
Sbjct: 225 TVAGVNAKGACIGPMGGRVRAVMAELHGEKIDIVDHSDDPAEMIAHALSPARVVSVTVVD 284
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354
D V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ E + D
Sbjct: 285 PDARAARVVVPDYQLSLAIGKEGQNARLAAKLTGWRIDIRSDAETGAADESD 336
>gi|327467113|gb|EGF12623.1| N utilization substance protein A [Streptococcus sanguinis SK330]
Length = 420
Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats.
Identities = 135/414 (32%), Positives = 225/414 (54%), Gaps = 16/414 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E
Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y
Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + +
Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P
Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305
Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEMEA 365
Query: 353 KDFNERTQFFMQAINVDEIIAHLLVA-EGFADVEELACVKISEIASIEGFDEET 405
+ + I D + V+ D + +A + E A +E EE
Sbjct: 366 ANELGGFAQEAEEILGDAAVLETEVSAAEATDFDAVAEETVLETAGLESEAEEL 419
>gi|94542552|gb|ABF32601.1| N utilization substance protein A [Streptococcus pyogenes MGAS9429]
gi|94546443|gb|ABF36490.1| N utilization substance protein A [Streptococcus pyogenes MGAS2096]
Length = 396
Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats.
Identities = 130/367 (35%), Positives = 210/367 (57%), Gaps = 15/367 (4%)
Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62
+ E+L+ + EK ID+ ++ + +S++ A + YG +E N +T D +
Sbjct: 10 NIMSKEMLEAFRILEEEKHIDKADIIDAVTESLKSAYKRRYGQSESCVIEFNEKTADFQV 69
Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
F + EVVEEV + +ISLK A + ++G + +FGRVA QSAKQ I++K+
Sbjct: 70 FTVREVVEEVFDSRLEISLKDALAISSAYELGDKIRFEESVNEFGRVAAQSAKQTIMEKM 129
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182
R R+ + E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR+
Sbjct: 130 RRQMREVMFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRI 189
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
Y+Y V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV
Sbjct: 190 DVYVYKVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVR 249
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVI 288
S + ++D +G VG GS ++ V+++ E ID++ W D A F+
Sbjct: 250 SHNPNVDAIGTIVGRGGSNIKKVISKFHPKRVDAKTGLEIPVEENIDVIQWVDDPAEFIY 309
Query: 289 NALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347
NA+ PA V V+ DED+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 310 NAIAPAEVDMVLFDDEDLKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEY 369
Query: 348 SINRQKD 354
+
Sbjct: 370 DRLEAEK 376
>gi|322386001|ref|ZP_08059641.1| transcription elongation factor NusA [Streptococcus cristatus ATCC
51100]
gi|321269984|gb|EFX52904.1| transcription elongation factor NusA [Streptococcus cristatus ATCC
51100]
Length = 413
Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats.
Identities = 134/406 (33%), Positives = 220/406 (54%), Gaps = 16/406 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + +K I ++ ++ + +S++ A R YG +E N +TGD ++ + E
Sbjct: 6 EMLEAFRILEEDKGIKKEDIIEAVTESLRSAYRRRYGQADSAAIEFNEKTGDFHVYTVRE 65
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y
Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + +
Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG G+ ++ + ++ E ID++ W D A ++ NA+ P
Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDAKSGRMIPTEENIDVIEWVSDPAEYIYNAIAP 305
Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V +V+ ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 306 AEVDQVIFHAEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSASEFEAMEA 365
Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASI 398
+ VD A AE D E +++ E ++
Sbjct: 366 ANELGGFGQDYVPTEVDAPSAE-FEAEELNDTEVATEIELEESEAV 410
>gi|19746626|ref|NP_607762.1| transcription elongation factor NusA [Streptococcus pyogenes
MGAS8232]
gi|139473254|ref|YP_001127969.1| transcription elongation factor NusA [Streptococcus pyogenes str.
Manfredo]
gi|161761305|ref|YP_060778.2| transcription elongation factor NusA [Streptococcus pyogenes
MGAS10394]
gi|162139101|ref|YP_599142.2| transcription elongation factor NusA [Streptococcus pyogenes
MGAS10270]
gi|162139179|ref|YP_603019.2| transcription elongation factor NusA [Streptococcus pyogenes
MGAS10750]
gi|162139397|ref|YP_280920.2| transcription elongation factor NusA [Streptococcus pyogenes
MGAS6180]
gi|306826865|ref|ZP_07460165.1| transcription termination factor NusA [Streptococcus pyogenes ATCC
10782]
gi|19748845|gb|AAL98261.1| transcription termination-antitermination factor [Streptococcus
pyogenes MGAS8232]
gi|134271500|emb|CAM29721.1| putative N utilization substance protein A [Streptococcus pyogenes
str. Manfredo]
gi|304430883|gb|EFM33892.1| transcription termination factor NusA [Streptococcus pyogenes ATCC
10782]
Length = 385
Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats.
Identities = 130/362 (35%), Positives = 209/362 (57%), Gaps = 15/362 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + EK ID+ ++ + +S++ A + YG +E N +T D +F + E
Sbjct: 4 EMLEAFRILEEEKHIDKADIIDAVTESLKSAYKRRYGQSESCVIEFNEKTADFQVFTVRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R R
Sbjct: 64 VVEEVFDSRLEISLKDALAISSAYELGDKIRFEESVNEFGRVAAQSAKQTIMEKMRRQMR 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ + E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR+ Y+Y
Sbjct: 124 EVMFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIDVYVY 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + +
Sbjct: 184 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG GS ++ V+++ E ID++ W D A F+ NA+ P
Sbjct: 244 VDAIGTIVGRGGSNIKKVISKFHPKRVDAKTGLEIPVEENIDVIQWVDDPAEFIYNAIAP 303
Query: 294 AIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V V+ DED+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 304 AEVDMVLFDDEDLKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYDRLEA 363
Query: 353 KD 354
+
Sbjct: 364 EK 365
>gi|332358012|gb|EGJ35845.1| N utilization substance protein A [Streptococcus sanguinis SK1056]
Length = 420
Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats.
Identities = 134/417 (32%), Positives = 225/417 (53%), Gaps = 18/417 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E
Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y
Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + +
Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P
Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305
Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDSKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEMEA 365
Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409
+ + I D + V+ + + V + I G + E A E+
Sbjct: 366 ANELGGFAQEAEEILGDAAVLETEVSAA--EATDFDAVAEETVLEIAGLESE-AEEL 419
>gi|257055490|ref|YP_003133322.1| transcription elongation factor NusA [Saccharomonospora viridis DSM
43017]
gi|256585362|gb|ACU96495.1| transcription termination factor NusA [Saccharomonospora viridis
DSM 43017]
Length = 348
Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats.
Identities = 135/366 (36%), Positives = 204/366 (55%), Gaps = 27/366 (7%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ A+ +K I + VL + ++ A + G R++I+ +TG + +
Sbjct: 5 IAALRAIEADKDIPFETVLEAIESALLTAYKHTEGRQPHARIDIDRKTGYVRV------- 57
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
+A D + ++ D P FGR+A +A+QVI+Q++R+AE ++
Sbjct: 58 -------------IAYTLDENGEVVEEWDD--TPEGFGRIAAATARQVILQRLRDAEHEK 102
Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
Y EF + GEI++G V+R N VIV +G+++GV+ E + E G R+K+Y
Sbjct: 103 TYGEFSAQEGEIVAGVVQRDAKANARGMVIVQVGDTEGVLPPAEQVPGEVYEHGARLKAY 162
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ V R RGPQ+ LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV S+
Sbjct: 163 VVGVSRTARGPQITLSRTHPNLVRKLFALEVPEIADGTVEITAVAREAGHRSKIAVRSTV 222
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDED 304
++ GAC+G G+RV+ V++EL EKIDI+ S D A FV NAL PA V V +DE
Sbjct: 223 PGVNAKGACIGHVGARVRNVMSELGGEKIDIIDHSDDPARFVGNALSPAKVVSVDVVDER 282
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
VIVP QLSLAIG+ GQN RLA++LTGW IDI ++ Q+ + +
Sbjct: 283 TKTARVIVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDAAPEPGEQQHMDPAEKRHPA 342
Query: 365 AINVDE 370
A +
Sbjct: 343 ATGSAD 348
>gi|325686965|gb|EGD28989.1| N utilization substance protein A [Streptococcus sanguinis SK72]
Length = 420
Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats.
Identities = 134/414 (32%), Positives = 224/414 (54%), Gaps = 16/414 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E
Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 66 VVDEVFDSRLEISLKDALTISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y
Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + +
Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P
Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305
Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEMEA 365
Query: 353 KDFNERTQFFMQAINVDEIIAHLLVA-EGFADVEELACVKISEIASIEGFDEET 405
+ + I D + V+ D + +A + E +E EE
Sbjct: 366 ANELGGFAQEAEEILADAAVLETEVSGAEATDFDAVAEETVLETVGLEREAEEL 419
>gi|195977581|ref|YP_002122825.1| transcription elongation factor NusA [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|225869110|ref|YP_002745058.1| N utilization substance protein A [Streptococcus equi subsp.
zooepidemicus]
gi|225869938|ref|YP_002745885.1| N utilization substance protein A [Streptococcus equi subsp. equi
4047]
gi|195974286|gb|ACG61812.1| transcription termination protein NusA [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|225699342|emb|CAW92741.1| putative N utilization substance protein A [Streptococcus equi
subsp. equi 4047]
gi|225702386|emb|CAX00230.1| putative N utilization substance protein A [Streptococcus equi
subsp. zooepidemicus]
Length = 384
Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats.
Identities = 128/380 (33%), Positives = 209/380 (55%), Gaps = 15/380 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + EK ID+ ++ + +S++ A + YG +E N +T D +F + E
Sbjct: 4 EMLEAFRILEEEKHIDKADIIEAVTESLKSAYKRRYGQAESCVIEFNDKTADFQVFTVRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + +ISL A + ++G + +FGRVA QSAKQ I++++R R
Sbjct: 64 VVEEVFDSRLEISLNDALAISSAYELGDKIRFEESVSEFGRVAAQSAKQTIMERMRRQMR 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ + E+K GEI++GTV+R + + V+LG+ + + + I E + DR+ Y+Y
Sbjct: 124 EITFNEYKQHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIDVYVY 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + +
Sbjct: 184 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG GS ++ V+++ E ID++ W D A F+ NA+ P
Sbjct: 244 VDAIGTIVGRGGSNIKKVISKFHPKRYDAKTGLEIPVEENIDVIQWVDDPAEFIYNAIAP 303
Query: 294 AIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V V+ D+D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 304 AEVDMVLFDDDDLKRATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYERLEA 363
Query: 353 KDFNERTQFFMQAINVDEII 372
+ T+ +
Sbjct: 364 EKEAAMTEAVATEELLTNEE 383
>gi|116514302|ref|YP_813208.1| transcription elongation factor NusA [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
gi|116093617|gb|ABJ58770.1| Transcription elongation factor [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
Length = 406
Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats.
Identities = 137/361 (37%), Positives = 217/361 (60%), Gaps = 3/361 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ D + K I +DV++ M ++ A + YG ++ ++ N + GD + L
Sbjct: 4 EMLEAFDVLEKTKGIKQDVIVEAMKAALAAAYKKNYGLAENVEIDFNEKKGDFKVMALKT 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV++ ++SLK A + + ++G + + P +FGR A +AKQV++Q++REAE
Sbjct: 64 VVDEVQDDRVEVSLKDALAINRAYEVGDTIKFEVTPKNFGRTAAATAKQVVMQRLREAEN 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVI-RRDETISRENLRPGDRVKSYI 186
E+ E+++GTV+R + V V++GN + V+ + +TI E+ P DRV+ +
Sbjct: 124 AHIVNEYSQYEDELVTGTVERTDNRFVYVNIGNVEAVMDIKCDTIPGEHYNPQDRVRVLV 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
V + +G Q+ +SRT P + + F EVPEI++G V++ +++R+ G R K+AV S+D
Sbjct: 184 TKVGADGKGAQIRVSRTAPDVVKRFFEQEVPEIFDGTVEIMSIAREAGERTKIAVKSNDP 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE--D 304
+IDPVG CVG RGSRVQ VV L E IDIV + D + ++ NAL PA V V ++ D
Sbjct: 244 NIDPVGTCVGPRGSRVQNVVNALGGENIDIVQYEEDPSDYIANALNPAEVIAVQFEDEDD 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+ VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E + + + T+
Sbjct: 304 KRKAFVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDESEVEDETEVAED 363
Query: 365 A 365
Sbjct: 364 Q 364
>gi|87309244|ref|ZP_01091380.1| transcription elongation factor NusA [Blastopirellula marina DSM
3645]
gi|87287883|gb|EAQ79781.1| transcription elongation factor NusA [Blastopirellula marina DSM
3645]
Length = 425
Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats.
Identities = 158/427 (37%), Positives = 249/427 (58%), Gaps = 37/427 (8%)
Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
N E+L+I DA+ +K+ID++VV + ++ A R + S++ + I+ E G IS
Sbjct: 1 MNPTEVLRIVDAIHRDKNIDKEVVFQAIESALVSATRKYHSEESEVVIHIDREDGSIS-- 58
Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMD-FGRVAVQSAKQVIIQKV 122
G + +P+ P + GR+ Q+AKQVIIQK+
Sbjct: 59 ------------------------------GHIDGEPVDPEEAVGRIGAQTAKQVIIQKI 88
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182
REAERD + E+ + VG++++GTV R E G IV LGN + ++ R E I E+ DRV
Sbjct: 89 REAERDSLHDEYDEMVGQMVNGTVHRAEGGAAIVALGNVEAILPRSEQIPGESFHANDRV 148
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
++ + +VR++ +V+LSR + +F+ +LF E+PEI + ++++K +SR+PG R+K+AV
Sbjct: 149 RAIVLEVRKQGSRVKVVLSRANKRFVQRLFEQEIPEITDEVIEIKNISREPGYRSKVAVD 208
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
SSD +D VGACVG+RG+R++ +V EL E+IDIV W+ D T + NAL+PA V +V+L
Sbjct: 209 SSDQRVDCVGACVGVRGNRIKNIVDELSGERIDIVRWTDDPETLIPNALQPAEVEEVILC 268
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
+ +GR V+V ++QLSLAIGRRGQNVRLAS+L GW I+I+ EE ++ F
Sbjct: 269 KMMGRAIVLVREDQLSLAIGRRGQNVRLASKLCGWDIEIMLREELEEQIERAVTA----F 324
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
V + +A LV EGF ++L+ ++ + ++ F EE I+ A +
Sbjct: 325 TGIDGVTDSVAEQLVGEGFLSYDDLSVIESDALMAMGEFTEEEIERIRDEAENRGMEAER 384
Query: 423 TLQKKIR 429
L+ + R
Sbjct: 385 ALETERR 391
>gi|323350354|ref|ZP_08086018.1| transcription elongation factor NusA [Streptococcus sanguinis
VMC66]
gi|322123427|gb|EFX95103.1| transcription elongation factor NusA [Streptococcus sanguinis
VMC66]
Length = 420
Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats.
Identities = 134/414 (32%), Positives = 224/414 (54%), Gaps = 16/414 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E
Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y
Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + +
Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P
Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305
Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEMEA 365
Query: 353 KDFNERTQFFMQAINVDEIIAHLLVA-EGFADVEELACVKISEIASIEGFDEET 405
+ + I + + V+ D + A + E A +E EE
Sbjct: 366 ANELGGFAQEAEEILAEAAVLETEVSAAEATDFDAAAEETVLETAGLESEVEEL 419
>gi|325697660|gb|EGD39545.1| N utilization substance protein A [Streptococcus sanguinis SK160]
gi|327490545|gb|EGF22326.1| N utilization substance protein A [Streptococcus sanguinis SK1058]
Length = 420
Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats.
Identities = 135/414 (32%), Positives = 225/414 (54%), Gaps = 16/414 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E
Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y
Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + +
Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P
Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305
Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEMEA 365
Query: 353 KDFNERTQFFMQAINVD-EIIAHLLVAEGFADVEELACVKISEIASIEGFDEET 405
+ + I D ++ + A D + A + E A +E EE
Sbjct: 366 ANELGGFAQEAEEILADAAVLGTEVSAAEATDFDAAAEETVLETAGLESEAEEL 419
>gi|183220911|ref|YP_001838907.1| transcription elongation factor NusA [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Paris)']
gi|189911007|ref|YP_001962562.1| transcription elongation factor NusA [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167775683|gb|ABZ93984.1| Transcription elongation factor [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|167779333|gb|ABZ97631.1| N utilization substance protein A [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
Length = 466
Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats.
Identities = 158/517 (30%), Positives = 246/517 (47%), Gaps = 74/517 (14%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD----IRVEINPETG-DISLF 63
L + +KS+DR++VL V+ DS+ A R G ++ +VE + +I +
Sbjct: 12 LFEAIQQFCQDKSLDRELVLGVIRDSLLAAYRKKVGLEAETDDRCQVEFGSDNKNEIIIS 71
Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
L +VV E ++SL+ A+ DP I++G + P D RV AKQ++ Q++R
Sbjct: 72 VLRDVVAEKTINPLEVSLEDAQKIDPKIEVGSQIRVFEKPQDLSRVLSSQAKQMVFQRLR 131
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183
+ E++ Y E+K K GE+ G +R + + +DLG +G++ + + E R GDR+K
Sbjct: 132 DMEKELLYQEYKSKEGELTHGYFQRWKKDIMSIDLGKVEGIMLKKDQNPGEKYRQGDRLK 191
Query: 184 SYIYDVRREQRGPQ--VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+ I V R P + LSR F+ KLF ME+PE+Y+GIV+++ V+R P R K+ V
Sbjct: 192 AIISRVELRPREPMPVITLSRASGDFVKKLFEMEIPEVYDGIVEIRDVARIPSYRTKVVV 251
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
+S S +DPVGACVGM+G R+QA+V EL +E+IDIV+ S + + F+ NA+ PA +V +
Sbjct: 252 TTSKSDVDPVGACVGMKGVRIQAIVRELGNERIDIVLHSDEPSIFIANAISPAKPVEVHV 311
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
D G VIVP E LSLAIG G NV+L SQL+G+ IDI T + +
Sbjct: 312 DRKRGDALVIVPDESLSLAIGINGSNVKLVSQLSGFKIDIKTVSQYNQELASPEAR---- 367
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
E + +E +E +
Sbjct: 368 ------------------------------------------EKLDRLFNAQQEAMEESE 385
Query: 422 ITLQKKIRELGVSEE----LCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477
+ ++ + L IPG+ +I L GIK +E L S ++L S
Sbjct: 386 DGYNQSGQDEEEEDSGFTPLSEIPGLTPRIVGLLEAGGIKNVETLLEFSQEELSKIS--- 442
Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
G K E ++ R + W+E+
Sbjct: 443 --------------GIGKTTAEQILRLLRESIEWVEE 465
>gi|332364628|gb|EGJ42397.1| N utilization substance protein A [Streptococcus sanguinis SK1059]
Length = 420
Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats.
Identities = 135/414 (32%), Positives = 224/414 (54%), Gaps = 16/414 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E
Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y
Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + +
Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P
Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305
Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEMEA 365
Query: 353 KDFNERTQFFMQAINVDEIIAHLLVA-EGFADVEELACVKISEIASIEGFDEET 405
+ + I D + V+ D + A + E A +E EE
Sbjct: 366 ANELGGFAQEAEEILADAAVLETEVSAAEATDFDAAAEETVLETAGLESEAEEL 419
>gi|291298941|ref|YP_003510219.1| NusA antitermination factor [Stackebrandtia nassauensis DSM 44728]
gi|290568161|gb|ADD41126.1| NusA antitermination factor [Stackebrandtia nassauensis DSM 44728]
Length = 347
Score = 294 bits (754), Expect = 2e-77, Method: Composition-based stats.
Identities = 132/344 (38%), Positives = 198/344 (57%), Gaps = 27/344 (7%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
L ++ +E+ I ++ + ++ A R S RVE+N ETG +++
Sbjct: 5 LVALRSLEHERDIPFHTIIDAIESALLTAYRHTPDAQSHARVEVNRETGTVTV------- 57
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
AR+ D ++ V P DFGR+A +AKQVI+Q++REA D
Sbjct: 58 -------------RAREVDAEGNV--VREWDDTPDDFGRIAAMTAKQVIMQRLREATDDV 102
Query: 130 QYLEFKDKVGEIISGTVKRVE----YGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
+ EF G++++G ++ E G V+VDLG + ++ E + EN G R+++
Sbjct: 103 NFGEFASLEGDVVTGVIQAHEGASEKGTVMVDLGKIEAMLPHVEQVPGENYSHGRRLRAA 162
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ V R RGPQ+ +SR+HP + KLF EVPEI +G+V++ AV+R+ G R K+AV ++
Sbjct: 163 VVQVSRGPRGPQITVSRSHPNLVKKLFAAEVPEIADGLVEIAAVAREAGHRTKIAVRATV 222
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304
+ ++ GAC+G GSRV+AV++EL EKIDI+ +S D ATFV NAL P+ V V + D D
Sbjct: 223 ADLNAKGACIGPMGSRVRAVMSELDGEKIDIIDYSEDPATFVGNALSPSKVVSVEVLDPD 282
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
V+VP QLSLAIGR GQN RLA++LTGW IDI ++
Sbjct: 283 DKVARVVVPDFQLSLAIGREGQNARLAARLTGWRIDIKSDAAPD 326
>gi|162139854|ref|YP_619194.2| transcription elongation factor NusA [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
Length = 406
Score = 294 bits (754), Expect = 2e-77, Method: Composition-based stats.
Identities = 137/361 (37%), Positives = 217/361 (60%), Gaps = 3/361 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ D + K I +DV++ M ++ A + YG ++ ++ N + GD + L
Sbjct: 4 EMLEAFDVLEKTKGIKQDVIVEAMKAALAAAYKKNYGLAENVEIDFNEKKGDFKVMALKT 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV++ ++SLK A + + ++G + + P +FGR A +AKQV++Q++REAE
Sbjct: 64 VVDEVQDDRVEVSLKDALAINRAYEVGDTIKFEVTPKNFGRTAAATAKQVVMQRLREAEN 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVI-RRDETISRENLRPGDRVKSYI 186
E+ E+++GTV+R + V V++GN + V+ + +TI E+ P DRV+ +
Sbjct: 124 AHIVNEYSQYEDELVTGTVERTDNRFVYVNIGNVEAVMDIKCDTIPGEHYNPQDRVRVLV 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
V + +G Q+ +SRT P + + F EVPEI++G V++ +++R+ G R K+AV S+D
Sbjct: 184 TKVGADGKGAQIRVSRTAPDVVKRFFEQEVPEIFDGTVEIMSIAREAGERTKIAVKSNDP 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE--D 304
+IDPVG CVG RGSRVQ VV L E IDIV + D + ++ NAL PA V V ++ D
Sbjct: 244 NIDPVGTCVGPRGSRVQNVVNALGGENIDIVQYEEDPSDYIANALNPAEVIAVQFEDEDD 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+ VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E + + + T+
Sbjct: 304 ERKAFVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDESEVEDETEVAED 363
Query: 365 A 365
Sbjct: 364 Q 364
>gi|327459330|gb|EGF05676.1| N utilization substance protein A [Streptococcus sanguinis SK1]
Length = 420
Score = 294 bits (754), Expect = 2e-77, Method: Composition-based stats.
Identities = 135/414 (32%), Positives = 224/414 (54%), Gaps = 16/414 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E
Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y
Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + +
Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P
Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305
Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEMEA 365
Query: 353 KDFNERTQFFMQAINVDEIIAHLLVA-EGFADVEELACVKISEIASIEGFDEET 405
+ + I D + V+ D + A + E A +E EE
Sbjct: 366 ANELGGFAQEAEEILGDAAVLETEVSAAEATDFDAAAEETVLETAGLESEAEEL 419
>gi|307709807|ref|ZP_07646258.1| transcription elongation protein nusA [Streptococcus mitis SK564]
gi|307619509|gb|EFN98634.1| transcription elongation protein nusA [Streptococcus mitis SK564]
Length = 374
Score = 294 bits (754), Expect = 2e-77, Method: Composition-based stats.
Identities = 126/359 (35%), Positives = 210/359 (58%), Gaps = 15/359 (4%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + EV
Sbjct: 1 MLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVREV 60
Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
V+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 61 VDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTRA 120
Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y
Sbjct: 121 ITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVYK 180
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + ++
Sbjct: 181 VEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPNV 240
Query: 249 DPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRPA 294
D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ PA
Sbjct: 241 DAIGTIVGRGGANIKKITSKFHPARYDAKNDRMVPIEENIDVIEWVADPAEFIYNAIAPA 300
Query: 295 IVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E +
Sbjct: 301 EVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMEE 359
>gi|194398628|ref|YP_002037214.1| transcription elongation factor NusA [Streptococcus pneumoniae G54]
gi|194358295|gb|ACF56743.1| transcription termination factor NusA [Streptococcus pneumoniae
G54]
Length = 378
Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats.
Identities = 127/360 (35%), Positives = 210/360 (58%), Gaps = 15/360 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E
Sbjct: 4 EMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 64 VVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y
Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + +
Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P
Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKNDRMVPIEENIDVIEWVADPAEFIYNAIAP 303
Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 304 AEVDQVIFDENDSKRALVVVPXNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMED 363
>gi|324991725|gb|EGC23657.1| N utilization substance protein A [Streptococcus sanguinis SK353]
Length = 420
Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats.
Identities = 134/414 (32%), Positives = 224/414 (54%), Gaps = 16/414 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E
Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y +K+ EI+SGTV+R + + ++LG+ + + + + I E DR++ ++Y
Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYINLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + +
Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P
Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305
Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEMEA 365
Query: 353 KDFNERTQFFMQAINVDEIIAHLLVA-EGFADVEELACVKISEIASIEGFDEET 405
+ + I D + V+ D + A + E A +E EE
Sbjct: 366 ANELGGFAQEAEEILADAAVLETEVSAAEATDFDAAAEETVLETAGLESEAEEL 419
>gi|330718231|ref|ZP_08312831.1| transcription elongation factor NusA [Leuconostoc fallax KCTC 3537]
Length = 375
Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats.
Identities = 139/371 (37%), Positives = 219/371 (59%), Gaps = 5/371 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGT-MSDIRVEINPETGDISLFRLL 66
EL+ DA+ E+ IDR +V+ + ++ A + + S++ V N G I++ ++
Sbjct: 4 ELVDALDALENERGIDRQIVVDALELALAAAYKKQFNATQSNVDVTFNDRNGSITIKQIK 63
Query: 67 EVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
VV E+ E+ +I L A + + + G + + P +FGR+A Q+AKQVI+QK+RE
Sbjct: 64 TVVLDEDFEDEVIEIPLSEALAINRAYEAGDEIRFDVTPKNFGRIAAQTAKQVIMQKLRE 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVK 183
A R+ Y +F + EII+G V+R + + V L GN + V+ +++ + E+ R DR+K
Sbjct: 124 AGREAIYKKFSEYQDEIITGEVERQDARFLYVMLPGNQEAVMAQNDQMPNEHYRMHDRIK 183
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+ V +GPQ+ +SR + +LF EVPE+Y+G V++ +++R+ G R+K+AV++
Sbjct: 184 VLVSKVENSPKGPQIFVSRAAEDLVKRLFEQEVPEVYDGTVEIMSIAREAGDRSKIAVYT 243
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
DS +DPVGA VG RG+RVQAVV EL E +DIV W D A ++ NAL P+ V V+ D
Sbjct: 244 HDSDLDPVGALVGQRGTRVQAVVNELGGENMDIVEWVEDEAQYIANALNPSEVVDVIFDP 303
Query: 304 DVGRI-EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
+ VIVP QLSLAIG++GQN RLA++LTG+ IDI +E E + K
Sbjct: 304 ENNHAVTVIVPDNQLSLAIGKKGQNARLAARLTGFKIDIKSESEAADFLAKVAEREDTSQ 363
Query: 363 MQAINVDEIIA 373
+ N + +
Sbjct: 364 PEEKNQNSDMD 374
>gi|125718693|ref|YP_001035826.1| transcription elongation factor NusA [Streptococcus sanguinis SK36]
gi|125498610|gb|ABN45276.1| N utilization substance protein A, putative [Streptococcus
sanguinis SK36]
Length = 420
Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats.
Identities = 136/414 (32%), Positives = 224/414 (54%), Gaps = 16/414 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E
Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y
Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + +
Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P
Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305
Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 306 AEVDQVIFNEEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEMEA 365
Query: 353 KDFNERTQFFMQAINVDEIIAHLLVA-EGFADVEELACVKISEIASIEGFDEET 405
+ + I D I V+ D + A + E A +E EE
Sbjct: 366 ANELGGFAQEAEEILADAAILETEVSGAEATDFDAAAEETVLETAGLESEAEEL 419
>gi|328944976|gb|EGG39133.1| N utilization substance protein A [Streptococcus sanguinis SK1087]
Length = 420
Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats.
Identities = 136/414 (32%), Positives = 224/414 (54%), Gaps = 16/414 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E
Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y
Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + +
Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P
Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305
Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDSKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEMEA 365
Query: 353 KDFNERTQFFMQAINVDEIIAHLLVA-EGFADVEELACVKISEIASIEGFDEET 405
+ + I D + V+ D + A I E A +E EE
Sbjct: 366 ANELGGFAQEAEEILADAAVLETEVSAAEATDFDAAAEETILETAGLESEAEEL 419
>gi|315222140|ref|ZP_07864049.1| transcription termination factor NusA [Streptococcus anginosus
F0211]
gi|315188766|gb|EFU22472.1| transcription termination factor NusA [Streptococcus anginosus
F0211]
Length = 397
Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats.
Identities = 128/383 (33%), Positives = 209/383 (54%), Gaps = 15/383 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + +K I ++ ++ + +S++ A R YG +E N +TGD ++ + E
Sbjct: 4 EMLEAFRILEEDKGIKKEDIIEAVTESLRSAYRRRYGQADSAAIEFNEKTGDFRVYTVRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 64 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPTEFGRVAAQSAKQTIMEKMRKQTR 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y ++K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y
Sbjct: 124 AITYNKYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + +
Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P
Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPAKYDAKSGRMIPVEENIDVIEWVADPAEFIYNAIAP 303
Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V +V+ D ED V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E +
Sbjct: 304 AEVDQVIFDSEDSKHALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMEE 363
Query: 353 KDFNERTQFFMQAINVDEIIAHL 375
E
Sbjct: 364 AGELGGFAEEADEFATIESPVET 386
>gi|146319503|ref|YP_001199215.1| transcription elongation factor NusA [Streptococcus suis 05ZYH33]
gi|146321698|ref|YP_001201409.1| transcription elongation factor NusA [Streptococcus suis 98HAH33]
gi|223934079|ref|ZP_03626028.1| NusA antitermination factor [Streptococcus suis 89/1591]
gi|253752514|ref|YP_003025655.1| N utilization substance protein A [Streptococcus suis SC84]
gi|253754340|ref|YP_003027481.1| N utilization substance protein A [Streptococcus suis P1/7]
gi|253756274|ref|YP_003029414.1| N utilization substance protein A [Streptococcus suis BM407]
gi|302024448|ref|ZP_07249659.1| transcription elongation factor NusA [Streptococcus suis 05HAS68]
gi|145690309|gb|ABP90815.1| Transcription elongation factor [Streptococcus suis 05ZYH33]
gi|145692504|gb|ABP93009.1| Transcription elongation factor [Streptococcus suis 98HAH33]
gi|223897249|gb|EEF63661.1| NusA antitermination factor [Streptococcus suis 89/1591]
gi|251816803|emb|CAZ52446.1| putative N utilization substance protein A [Streptococcus suis
SC84]
gi|251818738|emb|CAZ56574.1| putative N utilization substance protein A [Streptococcus suis
BM407]
gi|251820586|emb|CAR47342.1| putative N utilization substance protein A [Streptococcus suis
P1/7]
gi|292559121|gb|ADE32122.1| transcription termination factor NusA [Streptococcus suis GZ1]
gi|319758923|gb|ADV70865.1| transcription elongation factor NusA [Streptococcus suis JS14]
Length = 380
Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats.
Identities = 125/363 (34%), Positives = 206/363 (56%), Gaps = 15/363 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + + I++ ++ + +S++ A + YG +E + + GD +F + E
Sbjct: 4 EMLEAFRILEEDMGINKADIIDAVTESLRSAYKRRYGQSESAVIEFDEKKGDFHVFTVRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ +R
Sbjct: 64 VVDEVFDSRLEISLKDALAISSAYEMGDKIKFQEDPAEFGRVAAQSAKQTIMEKMRKQKR 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ +K EI+SGTV+R + + V+LG + + + + I E + DR++ Y+Y
Sbjct: 124 AITFNTYKQHENEIMSGTVERFDNRFIYVNLGTIEAQLSKQDQIPGEVFQSHDRIEVYVY 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + +
Sbjct: 184 KVEDNGRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG GS ++ + ++ E ID++ W D A F+ NAL P
Sbjct: 244 VDAIGTIVGRGGSNIKKITSKFHPARYDAKNDRMIPTEENIDVIEWVADEAEFIYNALAP 303
Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V +V+ D ED V+VP ++LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 304 AEVDQVLFDTEDGKHATVVVPDDKLSLAIGRRGQNVRLAAHLTGFRIDIKSASEYEAFEA 363
Query: 353 KDF 355
+
Sbjct: 364 TQY 366
>gi|21224053|ref|NP_629832.1| transcription elongation factor NusA [Streptomyces coelicolor
A3(2)]
gi|7801276|emb|CAB91140.1| putative transcriptional termination/antitermination factor
[Streptomyces coelicolor A3(2)]
Length = 340
Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats.
Identities = 132/340 (38%), Positives = 195/340 (57%), Gaps = 21/340 (6%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ + EK I D+++ + ++ A G+ RVE++ TG ++++
Sbjct: 5 MSALRGLVREKEISFDLLVEAIESALLIAYHRTEGSRRHARVELDRNTGHVTVWAK---- 60
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
E+ + AR+ D P DFGR+A +AKQVI+Q++R+AE D
Sbjct: 61 ---EDPDDLEEGQAAREFDD------------TPSDFGRIAATTAKQVILQRLRDAEDDA 105
Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
E+ + G+I++G V++ + NV+VD+G + ++ E + E G R++SY+
Sbjct: 106 TLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGETYPHGARLRSYVVR 165
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S +
Sbjct: 166 VAKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEISAIAREAGHRTKIAVRSTRSGL 225
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307
+ GAC+G G RV+ V+ EL EKIDIV WS D A V NAL PA V+KV +D
Sbjct: 226 NAKGACIGPMGGRVRNVMGELNGEKIDIVDWSDDPAEMVANALSPARVSKVEVVDLAARS 285
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347
VIVP QLSLAIG+ GQN RLA++LTGW IDI + E
Sbjct: 286 ARVIVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEQ 325
>gi|229820977|ref|YP_002882503.1| NusA antitermination factor [Beutenbergia cavernae DSM 12333]
gi|229566890|gb|ACQ80741.1| NusA antitermination factor [Beutenbergia cavernae DSM 12333]
Length = 346
Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats.
Identities = 126/343 (36%), Positives = 197/343 (57%), Gaps = 22/343 (6%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ A+ E+ I DV++ + ++ A G + RV ++ ++G +++ EVV
Sbjct: 5 MSALRALEREREISLDVLVGAIEQALLSAYERTPGAYPEARVHLDRQSGHVTVLAT-EVV 63
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
E + + P FGR+A +A+QVIIQ++R+AE D+
Sbjct: 64 GEGDEEVRR-------------------EFDHTPEGFGRIATSTARQVIIQRLRDAEDDQ 104
Query: 130 QYLEFKDKVGEIISGTVKRVEYGN-VIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
F+ + GE+I+G V++ V+VD+G + V+ E + E+ G+R+++Y+ D
Sbjct: 105 VLGTFRGREGELIAGVVQQGGRVGAVLVDVGGVEAVLPPHEQVPGESYPHGERIRAYVLD 164
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V R +GP + LSRTHP F+ ++F +EVPE+ +G V++ A++R+ G R K+AV S +
Sbjct: 165 VSRGLKGPSITLSRTHPNFVRRMFALEVPEVADGSVEIAALAREAGHRTKMAVRSLVPGV 224
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307
GAC+G G RV+AV+ ELR EKIDIV +S D A FV AL PA V+ V + D +
Sbjct: 225 GAKGACIGPMGQRVRAVMAELRGEKIDIVDFSEDPARFVAAALSPARVSSVQIVDAEARS 284
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350
VIVP QLSLAIG+ GQN RLA++LTGW IDI + + + +
Sbjct: 285 ARVIVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTQPADD 327
>gi|307705617|ref|ZP_07642469.1| transcription elongation protein nusA [Streptococcus mitis SK597]
gi|307620894|gb|EFN99978.1| transcription elongation protein nusA [Streptococcus mitis SK597]
Length = 374
Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats.
Identities = 126/359 (35%), Positives = 210/359 (58%), Gaps = 15/359 (4%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + EV
Sbjct: 1 MLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVREV 60
Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
V+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 61 VDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTRA 120
Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y
Sbjct: 121 ITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVYK 180
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + ++
Sbjct: 181 VEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPNV 240
Query: 249 DPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRPA 294
D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ PA
Sbjct: 241 DAIGTIVGRGGANIKKITSKFHPARYDAKSDRMVPIEENIDVIEWVADPAEFIYNAIAPA 300
Query: 295 IVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E +
Sbjct: 301 EVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMEE 359
>gi|303235674|ref|ZP_07322281.1| transcription termination factor NusA [Prevotella disiens
FB035-09AN]
gi|302484121|gb|EFL47109.1| transcription termination factor NusA [Prevotella disiens
FB035-09AN]
Length = 409
Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats.
Identities = 141/414 (34%), Positives = 237/414 (57%), Gaps = 8/414 (1%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+++ + KSIDR ++SV+ +S + +YG+ + V +NP+ GD ++R V
Sbjct: 1 MIETFNEFKETKSIDRTTLVSVLEESFRNVIAKIYGSDENFDVIVNPDKGDFEIYRNRVV 60
Query: 69 VEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
V + V++ +ISL A+ P ++G VS+P+ FGR A+ + +Q + KV E E
Sbjct: 61 VADGEVQDENKEISLTDAQKIVPDYEVGEDVSEPVDFAKFGRRAILNLRQTLSSKVLELE 120
Query: 127 RDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
D Y ++KD+VG+IISG V + + ++VD N++ ++ + E I R+ R G+ +++
Sbjct: 121 HDSLYNKYKDRVGQIISGEVYQVWKREVLLVDEDNNELILPKGEQIPRDQYRKGETIRAV 180
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I V E P+++LSRT P F+ +L EVPEI +G++ +K ++R PG RAK+AV S D
Sbjct: 181 ILRVDNENNNPKIILSRTAPTFLERLLEAEVPEIEDGLISIKGIARMPGERAKIAVESYD 240
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
IDPVGACVG+RGSRV +V EL +E ID++ W+ ++ F+ AL PA V+ + +DE+
Sbjct: 241 DRIDPVGACVGVRGSRVHGIVRELCNENIDVINWTANTKLFIQRALSPAKVSSLTIDEEN 300
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
+ EV + E++SLAIGR G N++LAS LTG+TID+ E ++ + + + +
Sbjct: 301 KKAEVFLQPEEVSLAIGRGGMNIKLASMLTGYTIDVFRELDEQTSEEDIYLDEFSD---- 356
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+D+ + + + G ++ + +EET + R E
Sbjct: 357 -EIDKWVIDAIKSIGLDTARQVLNAPREMLIEKADLEEETVDNVLNILRAEFES 409
>gi|183603429|ref|ZP_02716853.2| transcription termination factor NusA [Streptococcus pneumoniae
CDC3059-06]
gi|307067174|ref|YP_003876140.1| transcription elongation factor [Streptococcus pneumoniae AP200]
gi|183576810|gb|EDT97338.1| transcription termination factor NusA [Streptococcus pneumoniae
CDC3059-06]
gi|306408711|gb|ADM84138.1| Transcription elongation factor [Streptococcus pneumoniae AP200]
gi|332076985|gb|EGI87447.1| transcription termination factor NusA [Streptococcus pneumoniae
GA17545]
Length = 374
Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats.
Identities = 126/359 (35%), Positives = 209/359 (58%), Gaps = 15/359 (4%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + EV
Sbjct: 1 MLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVREV 60
Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
V+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 61 VDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTRA 120
Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y
Sbjct: 121 ITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVYK 180
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + ++
Sbjct: 181 VEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPNV 240
Query: 249 DPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRPA 294
D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ PA
Sbjct: 241 DAIGTIVGRGGANIKKITSKFHPARYDAKNDRMVPIEENIDVIEWVADPAEFIYNAIAPA 300
Query: 295 IVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 301 EVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMED 359
>gi|307710806|ref|ZP_07647234.1| transcription elongation protein nusA [Streptococcus mitis SK321]
gi|307617412|gb|EFN96584.1| transcription elongation protein nusA [Streptococcus mitis SK321]
Length = 374
Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats.
Identities = 126/359 (35%), Positives = 210/359 (58%), Gaps = 15/359 (4%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + EV
Sbjct: 1 MLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVREV 60
Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
V+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 61 VDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTRA 120
Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y
Sbjct: 121 ITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVYK 180
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + ++
Sbjct: 181 VEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPNV 240
Query: 249 DPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRPA 294
D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ PA
Sbjct: 241 DAIGTIVGRGGANIKKITSKFHPARYDAKSDRMVPIEENIDVIEWVADPAEFIYNAIAPA 300
Query: 295 IVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E +
Sbjct: 301 EVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMEE 359
>gi|284036133|ref|YP_003386063.1| NusA antitermination factor [Spirosoma linguale DSM 74]
gi|283815426|gb|ADB37264.1| NusA antitermination factor [Spirosoma linguale DSM 74]
Length = 414
Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats.
Identities = 134/407 (32%), Positives = 232/407 (57%), Gaps = 9/407 (2%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
L++ A K+IDR +++++ D + R YGT + V IN E+GD+ ++R E+
Sbjct: 6 LIESFADFARSKNIDRPTMIAILEDVFRTMIRKKYGTDENFDVIINAESGDLEMWRTREI 65
Query: 69 VEEVENY---TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
V++ +I L AR ++G V++ + DFGR VQ+A+Q +IQK+++
Sbjct: 66 VDDNSEDIWDYDKIPLAEARKIQDDFEVGEQVAEEVKLDDFGRRVVQTARQTLIQKIKDM 125
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKS 184
E++ Y ++KD+VG++++ V ++ +I VD +++ + R E IS++ R G+ VK+
Sbjct: 126 EKELLYQKYKDQVGDLVTAEVYQLLKHEIILVDGESNELSLPRTEQISKDRYRKGEPVKA 185
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
I V P+++LSRT P F+ +LF +EVPEIY+G++ ++ + R+PG RAK+AV S
Sbjct: 186 VISRVDMLNGTPKIVLSRTSPVFLERLFEIEVPEIYDGLISIRKIVREPGERAKVAVESY 245
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGM+GSR+ +V EL +E ID++ ++ + + AL PA ++ + +D +
Sbjct: 246 DDRIDPVGACVGMKGSRIHGIVRELGNENIDVINYTENLELLISRALSPAKISSMQIDRE 305
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
R+ V + +Q+SLAIG+ GQN++LA +L ID+ + E + E
Sbjct: 306 TKRVSVFLKPDQVSLAIGKGGQNIKLAGRLVDMEIDVFRDNEGQEDD-----EDVDLMEF 360
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411
+ +DE + L G + + + E+ +E+T EI
Sbjct: 361 SDEIDEWMIQELRKVGLDTAKSVLALNKEELVRRTDLEEDTVEEILN 407
>gi|15675574|ref|NP_269748.1| transcription elongation factor NusA [Streptococcus pyogenes M1
GAS]
gi|71911225|ref|YP_282775.1| transcription elongation factor NusA [Streptococcus pyogenes
MGAS5005]
gi|162139078|ref|YP_597145.2| transcription elongation factor NusA [Streptococcus pyogenes
MGAS9429]
gi|162139127|ref|YP_601034.2| transcription elongation factor NusA [Streptococcus pyogenes
MGAS2096]
gi|13622778|gb|AAK34469.1| transcription termination-antitermination factor [Streptococcus
pyogenes M1 GAS]
gi|71854007|gb|AAZ52030.1| N utilization substance protein A [Streptococcus pyogenes MGAS5005]
Length = 385
Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats.
Identities = 130/362 (35%), Positives = 209/362 (57%), Gaps = 15/362 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + EK ID+ ++ + +S++ A + YG +E N +T D +F + E
Sbjct: 4 EMLEAFRILEEEKHIDKADIIDAVTESLKSAYKRRYGQSESCVIEFNEKTADFQVFTVRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R R
Sbjct: 64 VVEEVFDSRLEISLKDALAISSAYELGDKIRFEESVNEFGRVAAQSAKQTIMEKMRRQMR 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ + E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR+ Y+Y
Sbjct: 124 EVMFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIDVYVY 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + +
Sbjct: 184 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG GS ++ V+++ E ID++ W D A F+ NA+ P
Sbjct: 244 VDAIGTIVGRGGSNIKKVISKFHPKRVDAKTGLEIPVEENIDVIQWVDDPAEFIYNAIAP 303
Query: 294 AIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V V+ DED+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 304 AEVDMVLFDDEDLKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYDRLEA 363
Query: 353 KD 354
+
Sbjct: 364 EK 365
>gi|28895281|ref|NP_801631.1| transcription elongation factor NusA [Streptococcus pyogenes SSI-1]
gi|161485737|ref|NP_665302.2| transcription elongation factor NusA [Streptococcus pyogenes
MGAS315]
gi|209559841|ref|YP_002286313.1| transcription elongation factor NusA [Streptococcus pyogenes NZ131]
gi|28810527|dbj|BAC63464.1| putative transcription termination-antitermination factor
[Streptococcus pyogenes SSI-1]
gi|209541042|gb|ACI61618.1| Transcription termination protein NusA [Streptococcus pyogenes
NZ131]
Length = 385
Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats.
Identities = 130/362 (35%), Positives = 209/362 (57%), Gaps = 15/362 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + EK ID+ ++ + +S++ A + YG +E N +T D +F + E
Sbjct: 4 EMLEAFRILEEEKHIDKADIIDAVTESLKSAYKRRYGQSESCVIEFNEKTADFQVFTVRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R R
Sbjct: 64 VVEEVFDSRLEISLKDALAISSAYELGDKIRFEESVNEFGRVAAQSAKQTIMEKMRRQMR 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ + E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR+ Y+Y
Sbjct: 124 EVMFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIDVYVY 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + +
Sbjct: 184 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG GS ++ V+++ E ID++ W D A F+ NA+ P
Sbjct: 244 VDAIGTIVGRGGSNIKKVISKFHPKRVDAKTGLEIPVEENIDVIQWVDDPAEFIYNAIAP 303
Query: 294 AIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V V+ DED+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 304 AEVDMVLFDDEDLKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYDRLEA 363
Query: 353 KD 354
+
Sbjct: 364 EK 365
>gi|310778372|ref|YP_003966705.1| transcription termination factor NusA [Ilyobacter polytropus DSM
2926]
gi|309747695|gb|ADO82357.1| transcription termination factor NusA [Ilyobacter polytropus DSM
2926]
Length = 356
Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats.
Identities = 136/356 (38%), Positives = 210/356 (58%), Gaps = 4/356 (1%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGD 59
M S + L+ + EK I ++ ++ + ++ A + YG S I VEIN E+GD
Sbjct: 1 MKSKDAKVFLEALTELEKEKGISKESLIETVEQALLAAYKKHYGEEDSSIEVEINRESGD 60
Query: 60 ISLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117
+ ++ + VVE ++ + C+I L+ A +G V+ + +F R A+Q+ KQ+
Sbjct: 61 VKVYEIKTVVEAEDLYDSACEIILEDALLEKKRAKVGDVLKIEVNCEEFRRNAIQNGKQI 120
Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENL 176
+IQKVREAER + +FK + +II+G ++R + N+ ++ + ++ E +
Sbjct: 121 VIQKVREAERQFVFDKFKSREKDIINGIIRRIDDRRNIFIEFDGIEAMLPIVEQSPSDVY 180
Query: 177 RPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236
R GDR+K Y+ +V + R P++L+SR H + KLF +E+PEI +G++++KAV+R+ GSR
Sbjct: 181 RVGDRLKVYVVEVEKTSRFPKILISRKHEGLLKKLFELEIPEIEDGLIEIKAVAREAGSR 240
Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296
AK+AV+S + ID VGAC+G +G R++ VV EL EKIDIV W FV AL PA V
Sbjct: 241 AKVAVYSENKEIDTVGACIGQKGLRIKNVVNELNGEKIDIVEWLDSQEEFVSAALSPAKV 300
Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
V + ED VIV QLSLAIG+ GQN RLA++LTG +DI T E +
Sbjct: 301 MSVEVLEDQVTARVIVDTSQLSLAIGKNGQNARLAAKLTGMRVDIKTPEAAAEEEN 356
>gi|256784869|ref|ZP_05523300.1| transcription elongation factor NusA [Streptomyces lividans TK24]
gi|289768763|ref|ZP_06528141.1| transcription termination factor NusA [Streptomyces lividans TK24]
gi|289698962|gb|EFD66391.1| transcription termination factor NusA [Streptomyces lividans TK24]
Length = 340
Score = 293 bits (751), Expect = 4e-77, Method: Composition-based stats.
Identities = 132/340 (38%), Positives = 195/340 (57%), Gaps = 21/340 (6%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ + EK I D+++ + ++ A G+ RVE++ TG ++++
Sbjct: 5 MSALRGLVREKEISFDLLVEAIESALLIAYHRTEGSRRHARVELDRNTGHVTVWAK---- 60
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
E+ + AR+ D P DFGR+A +AKQVI+Q++R+AE D
Sbjct: 61 ---EDPDDLEEGQAAREFDD------------TPSDFGRIAATTAKQVILQRLRDAEDDA 105
Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
E+ + G+I++G V++ + NV+VD+G + ++ E + E G R++SY+
Sbjct: 106 TLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGETYPHGARLRSYVVR 165
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S +
Sbjct: 166 VAKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEISAIAREAGHRTKIAVRSTRSGL 225
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307
+ GAC+G G RV+ V+ EL EKIDIV WS D A V NAL PA V+KV +D
Sbjct: 226 NAKGACIGPMGGRVRNVMGELNGEKIDIVDWSDDPAEMVANALSPARVSKVEVVDLAARS 285
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347
VIVP QLSLAIG+ GQN RLA++LTGW IDI + E
Sbjct: 286 ARVIVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEQ 325
>gi|258647228|ref|ZP_05734697.1| transcription termination factor NusA [Prevotella tannerae ATCC
51259]
gi|260852981|gb|EEX72850.1| transcription termination factor NusA [Prevotella tannerae ATCC
51259]
Length = 419
Score = 293 bits (751), Expect = 4e-77, Method: Composition-based stats.
Identities = 136/410 (33%), Positives = 234/410 (57%), Gaps = 11/410 (2%)
Query: 6 RLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62
+ E++ + D A E K+IDR ++SV+ +S + L+G+ + V +NP+ GD +
Sbjct: 5 KAEVISLTDTFAEFKENKNIDRTTLVSVLEESFRSVITKLFGSDENFDVIVNPDKGDCEI 64
Query: 63 FRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
+R VV + VE++ QISL AR+ D + G VS+P+ FGR A+ + +Q +
Sbjct: 65 YRNRVVVADNAVEDHKSQISLTEAREIDSDYEEGEEVSEPINFAKFGRRAILTLRQTLAS 124
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPG 179
K+ E + D + ++KD+VGEII+ V + + +++D ++ + +++ I R+ G
Sbjct: 125 KLLELDHDALFNKYKDRVGEIIAAEVYQTWKQETLLMDDEGNELYLPKNQQIPRDFFHKG 184
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
D V++ I V P++ LSRT P+F+ +L E+PEI +G++ +K ++R PG RAK+
Sbjct: 185 DNVRAVIDRVDNLNGTPKIFLSRTSPEFLRRLLEQEIPEIGDGLISLKRIARIPGERAKI 244
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV S D IDPVGACVG++GSR+ +V EL +E ID++ ++ + A F+ AL PA V+ +
Sbjct: 245 AVESYDDRIDPVGACVGVKGSRIHGIVRELHNENIDVINYTSNPALFIQRALNPAQVSSI 304
Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
LDE+ + +V + E++SLAIG+ GQN++LAS LT +TID+ E E F +
Sbjct: 305 QLDEENRKAQVYLRPEEVSLAIGKGGQNIKLASMLTEYTIDVFREVEGDDQEDDIFLDEF 364
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409
+D+ + + + G +++ + +E T E+
Sbjct: 365 AD-----EIDQWVIDAIKSIGLQTAKDVLNAPRQMLIEKADLEESTVDEV 409
>gi|167751252|ref|ZP_02423379.1| hypothetical protein EUBSIR_02238 [Eubacterium siraeum DSM 15702]
gi|167655759|gb|EDR99888.1| hypothetical protein EUBSIR_02238 [Eubacterium siraeum DSM 15702]
gi|291556761|emb|CBL33878.1| transcription termination factor NusA [Eubacterium siraeum V10Sc8a]
Length = 370
Score = 293 bits (751), Expect = 4e-77, Method: Composition-based stats.
Identities = 129/351 (36%), Positives = 201/351 (57%), Gaps = 4/351 (1%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
M ++N EL + +A EK ID V++ + ++ A + Y +I+ +I+ G
Sbjct: 1 MANSNTTELFEALTLLAKEKGIDPAVLIEKIQTALVIAIKKEYPRSENIKFDIDIAKGKF 60
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDR-DPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119
+ EV EVE+ QIS++ A+ ++ G +V+ L FGR+A Q+AKQVI
Sbjct: 61 DVAIQKEVAAEVEDDANQISMEEAKTHTRRKLEYGDIVAIKLDTQHFGRIAAQTAKQVIK 120
Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYG--NVIVDLGNSDGVIRRDETISRENLR 177
Q ++E ER++ ++ E ++ TV + E N V+L ++ + R E I E LR
Sbjct: 121 QGLKEIEREQLVAQWGGLQDEAVTVTVLKTEPRTGNATVNLNGNEVPLFRSEQIPGEVLR 180
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
PGD VK Y+ V P + +SR + + + +LF EVPEIY+G V++KA+SR+ GSR+
Sbjct: 181 PGDMVKVYVSGVSATDHRPMLKISRVNKELVKRLFESEVPEIYDGTVEIKAISREAGSRS 240
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV S++ +D +GAC+G R+ V EL EK+D+V +S F+ AL+P+ V
Sbjct: 241 KVAVISNNPDVDALGACIGPGRQRISKVCAELGGEKMDVVFYSEKPEEFIAQALKPSDVI 300
Query: 298 KVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347
+V + D +V IVP QLSLAIG +GQN +LA++LTG+ IDI E
Sbjct: 301 RVEIPDPEVKACTAIVPDNQLSLAIGNKGQNAKLAAKLTGFKIDIRPESGF 351
>gi|330833473|ref|YP_004402298.1| transcription elongation factor NusA [Streptococcus suis ST3]
gi|329307696|gb|AEB82112.1| transcription elongation factor NusA [Streptococcus suis ST3]
Length = 380
Score = 293 bits (751), Expect = 4e-77, Method: Composition-based stats.
Identities = 125/363 (34%), Positives = 205/363 (56%), Gaps = 15/363 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + + I++ ++ + +S+ A + YG +E + + GD +F + E
Sbjct: 4 EMLEAFRILEEDMGINKADIIDAVTESLCSAYKRRYGQSESAVIEFDEKKGDFHVFTVRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ +R
Sbjct: 64 VVDEVFDSRLEISLKDALAISSAYEMGDKIKFQEDPAEFGRVAAQSAKQTIMEKMRKQKR 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ +K EI+SGTV+R + + V+LG + + + + I E + DR++ Y+Y
Sbjct: 124 AITFNTYKQHENEIMSGTVERFDNRFIYVNLGTIEAQLSKQDQIPGEVFQSHDRIEVYVY 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + +
Sbjct: 184 KVEDNGRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG GS ++ + ++ E ID++ W D A F+ NAL P
Sbjct: 244 VDAIGTIVGRGGSNIKKITSKFHPARYDAKNDRMIPTEENIDVIEWVADEAEFIYNALAP 303
Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V +V+ D ED V+VP ++LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 304 AEVDQVLFDTEDGKHATVVVPDDKLSLAIGRRGQNVRLAAHLTGFRIDIKSASEYEAFEA 363
Query: 353 KDF 355
+
Sbjct: 364 TQY 366
>gi|313124031|ref|YP_004034290.1| transcription elongation factor nusa [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
gi|312280594|gb|ADQ61313.1| transcription elongation factor NusA [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
gi|325685946|gb|EGD28009.1| N utilization substance protein A [Lactobacillus delbrueckii subsp.
lactis DSM 20072]
Length = 383
Score = 293 bits (750), Expect = 4e-77, Method: Composition-based stats.
Identities = 140/370 (37%), Positives = 219/370 (59%), Gaps = 3/370 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ D + K I +DV++ M ++ A + YG ++ ++ N + GD + L
Sbjct: 4 EMLEAFDVLEKTKGIKQDVIVEAMKAALAAAYKKNYGLAENVEIDFNEKKGDFKVMALKT 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV++ ++SLK A + + ++G + + P DFGR A +AKQV++Q++REAE
Sbjct: 64 VVDEVQDDRVEVSLKDALAINRAYEVGDTIKFEVTPKDFGRTAAATAKQVVMQRLREAEN 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVI-RRDETISRENLRPGDRVKSYI 186
E+ E+++GTV+R + V V++GN + V+ + +TI E+ P DRV+ +
Sbjct: 124 AHIVNEYSQYEDELVTGTVERTDNRFVYVNIGNVEAVMDIKRDTIPGEHYNPQDRVRVLV 183
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
V + +G Q+ +SRT P + +LF EVPEI++G V++ +++R+ G R K+AV S+D
Sbjct: 184 TKVGADGKGAQIRVSRTAPDVVKRLFEQEVPEIFDGTVEIISIAREAGERTKIAVKSNDP 243
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DED 304
+IDPVG CVG RGSRVQ VV EL E IDIV + D + ++ NAL PA V V ++D
Sbjct: 244 NIDPVGTCVGPRGSRVQNVVNELGGENIDIVQYEEDPSDYIANALNPAEVIAVQFEDEDD 303
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+ VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E + + + T+
Sbjct: 304 ERKAFVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDESEVEDETEVAED 363
Query: 365 AINVDEIIAH 374
Sbjct: 364 QDLQQTEAEE 373
>gi|269795641|ref|YP_003315096.1| transcription termination factor NusA [Sanguibacter keddieii DSM
10542]
gi|269097826|gb|ACZ22262.1| transcription termination factor NusA [Sanguibacter keddieii DSM
10542]
Length = 365
Score = 293 bits (750), Expect = 5e-77, Method: Composition-based stats.
Identities = 135/362 (37%), Positives = 208/362 (57%), Gaps = 12/362 (3%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ + E+ I DV++S + ++ A + G RVEI+ ++G ++++ ++
Sbjct: 5 MSALRLLEREREISLDVLVSAIEQALALAYQRTPGAQRTARVEIDRKSGHVTVWAREDIE 64
Query: 70 EEVENYTCQISLKVARDRDPSID--------IGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
E A + +G D P DFGR+A +A+QVI+Q+
Sbjct: 65 TEEPVEPRYSDGDDADGTEDDEAPTTRVVRTLGPEFDD--TPTDFGRIATSTARQVIMQR 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
+R+AE D+ +F+DK GE++SG +++ + V+VD+G ++ V+ E + E G+
Sbjct: 123 LRDAEDDQVLGQFRDKEGELVSGIIQQGRDPRVVLVDVGGTEAVLGAHEQVPTEKYTHGE 182
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
R++SY+ DV R +GPQ+ LSRTHP + KLF MEVPE+ +G V++ A++R+ G R K+A
Sbjct: 183 RLRSYVLDVSRGMKGPQISLSRTHPNLVRKLFEMEVPEVADGSVEIVAIAREAGHRTKMA 242
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V + S ++ GAC+G GSRV+AV+ EL DEKIDIV W+ D A FV +AL PA V V
Sbjct: 243 VRARVSGLNAKGACIGPMGSRVRAVMAELHDEKIDIVDWNDDPAAFVASALSPATVISVT 302
Query: 301 -LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
+D D VIVP QLSLAIG+ GQN RLA++LTGW IDI ++ + +
Sbjct: 303 VVDADARAARVIVPDFQLSLAIGKEGQNARLAAKLTGWRIDIRSDGGGAEGSDDASTTSS 362
Query: 360 QF 361
Sbjct: 363 DP 364
>gi|227537266|ref|ZP_03967315.1| transcription elongation factor NusA [Sphingobacterium spiritivorum
ATCC 33300]
gi|300772910|ref|ZP_07082779.1| transcription termination factor NusA [Sphingobacterium
spiritivorum ATCC 33861]
gi|227242870|gb|EEI92885.1| transcription elongation factor NusA [Sphingobacterium spiritivorum
ATCC 33300]
gi|300759081|gb|EFK55908.1| transcription termination factor NusA [Sphingobacterium
spiritivorum ATCC 33861]
Length = 412
Score = 293 bits (750), Expect = 5e-77, Method: Composition-based stats.
Identities = 127/393 (32%), Positives = 229/393 (58%), Gaps = 10/393 (2%)
Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV--ENYTC 77
K+IDR V+SV+ + + R +GT ++ V +NP+ GD+ ++R VVE+ E+
Sbjct: 18 KNIDRPTVISVLEEVFRSMIRKRFGTDENVDVIVNPDNGDLEIWRTRVVVEDEFSEDDDL 77
Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137
+I L A D +++G + + FGR A+ +A+Q ++ K+ E E+D + ++KD+
Sbjct: 78 EIELAEAVKHDADLEVGDDYIEQITLESFGRRAILAARQTLVSKILELEKDEVFKKYKDR 137
Query: 138 VGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196
GE++ G V ++ ++V D ++ ++ + E I + + GD +++ ++ V P
Sbjct: 138 EGELVIGEVYQIWKKEILVLDDDGNELILPKTEQIPADYFKKGDSIRAVVHKVDMMNNNP 197
Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256
++++SRT P F+ +LF +EVPEI++G++ +K + R+PG RAK+AV S D IDPVGACVG
Sbjct: 198 KIIISRTAPAFLQRLFELEVPEIFDGLITIKKIVREPGERAKVAVESYDDRIDPVGACVG 257
Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316
M+GSR+ +V ELR+E ID++ ++ + + ++ AL PA ++ + +DED V + +Q
Sbjct: 258 MKGSRIHGIVRELRNENIDVINFTTNHSLYITRALSPARISSIKIDEDNKTAAVYLKSDQ 317
Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376
+SLAIGR G N++LA +LTG+ ID+ E + +F+E + ++ + L
Sbjct: 318 VSLAIGRGGHNIKLAGKLTGYEIDVYREND-------EFDEDVDIEEFSDEIEGWVIDEL 370
Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEI 409
G + + + E+ +E+T EI
Sbjct: 371 KRVGLDTAKSVLSLTEEELVRRTDLEEDTIQEI 403
>gi|257457666|ref|ZP_05622833.1| transcription elongation factor NusA [Treponema vincentii ATCC
35580]
gi|257445052|gb|EEV20128.1| transcription elongation factor NusA [Treponema vincentii ATCC
35580]
Length = 485
Score = 293 bits (750), Expect = 5e-77, Method: Composition-based stats.
Identities = 144/437 (32%), Positives = 238/437 (54%), Gaps = 19/437 (4%)
Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGD--ISLFRLLEVVE 70
A EK +D D+ + ++ +++ A ++ + T ++ V TGD I+++ ++V+
Sbjct: 9 VRKFALEKELDEDLAIKIVEQTLKAAYKTAFKTDANAVVI----TGDDAINIYARKKIVD 64
Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130
+V ++ ++ A P +IG + L P DF R ++Q+ Q + Q RE ++D
Sbjct: 65 DVVKPELEVDIEEATKLAPDCEIGDELLFELDPKDFKRGSIQAGVQRVHQSTREIQKDSI 124
Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190
Y E+K K GEII G +R + N+ VDLG +G++ R + +E P DR+K+ I +V+
Sbjct: 125 YSEYKAKEGEIIIGYYQRKKNDNIYVDLGKVEGLLPRKFQLPQEIYHPNDRIKALIKEVK 184
Query: 191 REQRGP--QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
+ ++ Q++LSRT P F+ +L +EVPEIY+ IV++ + R+PG R K+AV S +
Sbjct: 185 KHRQSNVVQLILSRTDPDFVRRLMELEVPEIYDNIVELYKIVREPGYRTKVAVISHREDV 244
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307
DPVGACVG +GSR+Q ++TEL EKID++ +S D A F+ NAL PA V VV+ D +
Sbjct: 245 DPVGACVGPKGSRIQTIITELEGEKIDVLEYSSDPAVFIANALSPAEVLNVVILDAEKRM 304
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA-- 365
+V + QLS+AIG++G NVRLA++L W+ID+ TE++ + +
Sbjct: 305 ALAVVAESQLSIAIGKQGLNVRLANRLADWSIDVKTEKQFQEMDIHAETRKAAEELFNDD 364
Query: 366 -------INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
+D + L VE+L + E+ ++ G EE A ++ E E
Sbjct: 365 AVLLKDVEGIDPGVLAALHENHIETVEQLLDIPHEELRALPGMSEEKAAALEALINETFE 424
Query: 419 GIDITLQKKIRELGVSE 435
ID Q+ +E
Sbjct: 425 IID-ENQESAQEPQPEN 440
>gi|225848027|ref|YP_002728190.1| transcription termination factor NusA [Sulfurihydrogenibium
azorense Az-Fu1]
gi|225644454|gb|ACN99504.1| transcription termination factor NusA [Sulfurihydrogenibium
azorense Az-Fu1]
Length = 370
Score = 293 bits (750), Expect = 5e-77, Method: Composition-based stats.
Identities = 155/364 (42%), Positives = 225/364 (61%), Gaps = 18/364 (4%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-IRVEINPETGDISLFRLLE 67
L + + VA EK+I +V+ + D I A + Y +D I+V + + ++ + +
Sbjct: 5 LKNVIETVAKEKNIPEEVIERALKDGIFVAVKKEYKLRNDQIKVIYDKDKDELKVLIKKK 64
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
V VE+ +ISL+ A+ +P++D G V PL D GR+A+ AK+VI +KV ER
Sbjct: 65 VTPFVEDEKKEISLEEAKKYNPNVDYGKFVEVPLDLEDIGRIALSVAKEVIAEKVSRVER 124
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
D Y EFK+ G+II+GTV+R E ++IVDLG + ++ ++E I +E + GDRV++ +
Sbjct: 125 DILYKEFKEYEGKIITGTVRRFEGEDIIVDLGRVEAILPKEEQIPKEKYKIGDRVRALVL 184
Query: 188 DVRREQRGPQ-----------------VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVS 230
V +E + P ++LSRTHP F+ KL +EVPEI G ++VKAV+
Sbjct: 185 KVLKENKYPILEKGKVKRVIKVSEGPLIILSRTHPNFLKKLLEIEVPEIQEGEIEVKAVA 244
Query: 231 RDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA 290
R+PG RAK+AV++ D +IDPVG VG++GSR+Q V EL DEKID++ WS D A FVI A
Sbjct: 245 REPGERAKVAVYTKDKNIDPVGVVVGLKGSRIQNVSNELSDEKIDVIEWSEDPARFVIRA 304
Query: 291 LRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350
L PA TK L RIEV VPKE+LSLAIG+ G N +LA +LTGW IDI++EE+
Sbjct: 305 LSPARPTKYRLLPKEKRIEVAVPKEELSLAIGKNGINAKLAHKLTGWHIDILSEEDFEKI 364
Query: 351 RQKD 354
++
Sbjct: 365 QKLP 368
>gi|103423295|emb|CAI98136.1| Transcription elongation factor NusA [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
Length = 402
Score = 293 bits (750), Expect = 5e-77, Method: Composition-based stats.
Identities = 136/360 (37%), Positives = 216/360 (60%), Gaps = 3/360 (0%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+L+ D + K I +DV++ M ++ A + YG ++ ++ N + GD + L V
Sbjct: 1 MLEAFDVLEKTKGIKQDVIVEAMKAALAAAYKKNYGLAENVEIDFNEKKGDFKVMALKTV 60
Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
V+EV++ ++SLK A + + ++G + + P +FGR A +AKQV++Q++REAE
Sbjct: 61 VDEVQDDRVEVSLKDALAINRAYEVGDTIKFEVTPKNFGRTAAATAKQVVMQRLREAENA 120
Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVI-RRDETISRENLRPGDRVKSYIY 187
E+ E+++GTV+R + V V++GN + V+ + +TI E+ P DRV+ +
Sbjct: 121 HIVNEYSQYEDELVTGTVERTDNRFVYVNIGNVEAVMDIKCDTIPGEHYNPQDRVRVLVT 180
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +G Q+ +SRT P + + F EVPEI++G V++ +++R+ G R K+AV S+D +
Sbjct: 181 KVGADGKGAQIRVSRTAPDVVKRFFEQEVPEIFDGTVEIMSIAREAGERTKIAVKSNDPN 240
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE--DV 305
IDPVG CVG RGSRVQ VV L E IDIV + D + ++ NAL PA V V ++ D
Sbjct: 241 IDPVGTCVGPRGSRVQNVVNALGGENIDIVQYEEDPSDYIANALNPAEVIAVQFEDEDDE 300
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
+ VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E + + + T+
Sbjct: 301 RKAFVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDESEVEDETEVAEDQ 360
>gi|269956009|ref|YP_003325798.1| NusA antitermination factor [Xylanimonas cellulosilytica DSM 15894]
gi|269304690|gb|ACZ30240.1| NusA antitermination factor [Xylanimonas cellulosilytica DSM 15894]
Length = 344
Score = 293 bits (750), Expect = 5e-77, Method: Composition-based stats.
Identities = 127/336 (37%), Positives = 200/336 (59%), Gaps = 15/336 (4%)
Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV-VEE 71
+ E+ + DV++ + ++ A + RVE++ TG ++++ E +
Sbjct: 8 LRLLERERDLSLDVLVEAIESALLHAYHRTPDAYAKARVEVDRRTGHVTVWAREEFRTPD 67
Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131
+ + P +++G P DFGR+A +A+QVI+Q++R+AE D+
Sbjct: 68 PSDP----------EGRPLVELGP--EFDHTPQDFGRIATATARQVIVQRLRDAEDDQVL 115
Query: 132 LEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190
F+ K GE+I+G +++ + V+VD+G ++ V+ E + E G+R+++Y+ +V
Sbjct: 116 GLFRGKEGEVIAGVIQQGRDPRVVLVDVGGTEAVLPPHEQVPTEEYVHGERLRAYVVEVA 175
Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250
R +G QV LSRTHP + KLF +EVPE+ +G V++ A++R+ G R+K+AV S ++
Sbjct: 176 RGAKGAQVTLSRTHPGLVRKLFELEVPEVADGSVEITAIAREAGHRSKVAVRSRVQGLNA 235
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIE 309
GAC+G G+RV+AV+ EL EKIDIV S D A FV NAL PA VT V +DED
Sbjct: 236 KGACIGPMGARVRAVMAELHGEKIDIVDHSDDPARFVANALSPARVTSVTVVDEDARAAR 295
Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345
+VP QLSLAIG+ GQN RLA++LTGW IDI ++E
Sbjct: 296 AVVPDYQLSLAIGKEGQNARLAAKLTGWRIDIRSDE 331
>gi|291531685|emb|CBK97270.1| transcription termination factor NusA [Eubacterium siraeum 70/3]
Length = 370
Score = 293 bits (750), Expect = 6e-77, Method: Composition-based stats.
Identities = 128/351 (36%), Positives = 201/351 (57%), Gaps = 4/351 (1%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
M ++N EL + +A EK ID V++ + ++ A + Y +I+ +I+ G
Sbjct: 1 MANSNTTELFEALTLLAKEKGIDPAVLIEKIQTALVIAIKKEYPRSENIKFDIDIAKGKF 60
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDR-DPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119
+ EV EVE+ QIS++ A+ ++ G +V+ L FGR+A Q+AKQVI
Sbjct: 61 DVAIQKEVAAEVEDDANQISMEEAKTHTRRKLEYGDIVAIKLDTQHFGRIAAQTAKQVIK 120
Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYG--NVIVDLGNSDGVIRRDETISRENLR 177
Q ++E ER++ ++ E ++ TV + E N V+L ++ + R E I E L+
Sbjct: 121 QGLKEIEREQLVAQWGGLQDEAVTVTVLKTEPRTGNATVNLNGNEVPLFRSEQIPGEVLK 180
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
PGD VK Y+ V P + +SR + + + +LF EVPEIY+G V++KA+SR+ GSR+
Sbjct: 181 PGDMVKVYVSGVSATDHRPMLKISRVNKELVKRLFESEVPEIYDGTVEIKAISREAGSRS 240
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV S++ +D +GAC+G R+ V EL EK+D+V +S F+ AL+P+ V
Sbjct: 241 KVAVISNNPDVDALGACIGPGRQRISKVCAELGGEKMDVVFYSEKPEEFIAQALKPSDVI 300
Query: 298 KVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347
+V + D +V IVP QLSLAIG +GQN +LA++LTG+ IDI E
Sbjct: 301 RVEIPDPEVKACTAIVPDNQLSLAIGNKGQNAKLAAKLTGFKIDIRPESGF 351
>gi|319939747|ref|ZP_08014104.1| transcription termination factor NusA [Streptococcus anginosus
1_2_62CV]
gi|319811085|gb|EFW07396.1| transcription termination factor NusA [Streptococcus anginosus
1_2_62CV]
Length = 397
Score = 293 bits (749), Expect = 6e-77, Method: Composition-based stats.
Identities = 128/383 (33%), Positives = 211/383 (55%), Gaps = 15/383 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + +K I ++ ++ + +S++ A R YG +E N +TGD ++ + E
Sbjct: 4 EMLEAFRILEEDKGIKKEDIIEAVTESLRSAYRRRYGQADSAAIEFNEKTGDFRVYTVRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 64 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y ++K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y
Sbjct: 124 AITYNKYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + +
Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
ID +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P
Sbjct: 244 IDAIGTIVGRGGANIKKITSKFHPAKYDAKSDRMIPIEENIDVIEWVADPAEFIYNAIAP 303
Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V +V+ D +D V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E +
Sbjct: 304 AEVDQVIFDSQDSKHALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMEE 363
Query: 353 KDFNERTQFFMQAINVDEIIAHL 375
++ E
Sbjct: 364 AGELGGFAEEVEEFTAVESPVET 386
>gi|29829095|ref|NP_823729.1| transcription elongation factor NusA [Streptomyces avermitilis
MA-4680]
gi|29606201|dbj|BAC70264.1| putative transcriptional termination/antitermination factor
[Streptomyces avermitilis MA-4680]
Length = 328
Score = 293 bits (749), Expect = 6e-77, Method: Composition-based stats.
Identities = 131/344 (38%), Positives = 196/344 (56%), Gaps = 23/344 (6%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ + EK I D+++ + ++ A G+ RVE+N ETG ++++
Sbjct: 5 MSALRGLVREKEISFDLLVEAIESALLIAYHRTEGSRRHARVELNRETGHVTVW------ 58
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVV-SDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
A++ ++ G P FGR+A +AKQVI+Q++R+AE D
Sbjct: 59 --------------AKEDPEDLEEGQEAREFDDTPSGFGRIAATTAKQVILQRLRDAEDD 104
Query: 129 RQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
E+ + G+I++G V++ + NV+VD+G + ++ E + E + G R++SY+
Sbjct: 105 ATLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGETYQHGLRLRSYVV 164
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S
Sbjct: 165 RVAKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEISAIAREAGHRTKIAVRSTRSG 224
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVG 306
++ GAC+G G RV+ V+ EL EKIDIV WS D A V NAL PA V+KV +D
Sbjct: 225 LNAKGACIGPMGGRVRNVMAELNGEKIDIVDWSDDPAEMVANALSPARVSKVEVVDLAAR 284
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350
V VP QLSLAIG+ GQN RLA++LTGW IDI + E S +
Sbjct: 285 SARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEQSGD 328
>gi|256396850|ref|YP_003118414.1| NusA antitermination factor [Catenulispora acidiphila DSM 44928]
gi|256363076|gb|ACU76573.1| NusA antitermination factor [Catenulispora acidiphila DSM 44928]
Length = 324
Score = 293 bits (749), Expect = 6e-77, Method: Composition-based stats.
Identities = 130/338 (38%), Positives = 200/338 (59%), Gaps = 25/338 (7%)
Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71
+ ++ I + ++ + ++ A + G + RV+++ +G ++++ VE+
Sbjct: 7 ALRDLEKDRGIPFEKLVEDIEAALLIAYKRTDGAKTRARVQVDRSSGHVTVWA----VED 62
Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131
+E+ G P +FGR+A +AKQVI+Q++R+ E ++ +
Sbjct: 63 IED-------------------GSTREYDDTPSEFGRIASTTAKQVILQRLRDHEDEQTF 103
Query: 132 LEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190
EF + G++I+G V++ + V+V++G +G + E + E R G+R+K Y+ DVR
Sbjct: 104 GEFSGRKGDLITGVVQQGRDPRAVLVNIGKIEGTLPAAEQVPGEEYRHGERLKCYVVDVR 163
Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250
R QRGPQV LSRTHP + KLF +EVPEI G V++ A++R+ G R K+AV S + ++
Sbjct: 164 RGQRGPQVTLSRTHPDLVRKLFALEVPEIAEGAVEITAIAREAGHRTKIAVRSHRAGVNA 223
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIE 309
GAC+G G+RV+ V+ EL EKIDIV WS D A V NAL PA V+KV +D D
Sbjct: 224 KGACIGPMGARVRNVMAELHGEKIDIVDWSEDPAEMVGNALSPARVSKVQVVDLDQRSAR 283
Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347
VIVP QLSLAIG+ GQN RLA++LTGW IDI ++ E
Sbjct: 284 VIVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDAEP 321
>gi|323127911|gb|ADX25208.1| transcription elongation factor NusA [Streptococcus dysgalactiae
subsp. equisimilis ATCC 12394]
Length = 385
Score = 293 bits (749), Expect = 6e-77, Method: Composition-based stats.
Identities = 128/366 (34%), Positives = 209/366 (57%), Gaps = 15/366 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + EK ID+ ++ + +S++ A + YG +E N +T D +F + E
Sbjct: 4 EMLEAFRILEEEKHIDKADIIDAVTESLKSAYKRRYGQAESCVIEFNEKTADFQVFTVRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R R
Sbjct: 64 VVEEVFDSRLEISLKDALAISSAYELGDKIRFEESVNEFGRVAAQSAKQTIMEKMRRQMR 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ + E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR++ Y+Y
Sbjct: 124 EVTFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIEVYVY 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + +
Sbjct: 184 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG GS ++ V+++ E ID++ W D A F+ NA+ P
Sbjct: 244 VDAIGTIVGRGGSNIKKVISKFHPKRLDAKTGLEIPVEENIDVIQWVDDPAEFIYNAIAP 303
Query: 294 AIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V V+ D+D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + +
Sbjct: 304 AEVDMVLFDDDDLKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASDYDRFEA 363
Query: 353 KDFNER 358
+
Sbjct: 364 EKEAAM 369
>gi|329936656|ref|ZP_08286363.1| transcriptional termination/antitermination factor [Streptomyces
griseoaurantiacus M045]
gi|329303886|gb|EGG47769.1| transcriptional termination/antitermination factor [Streptomyces
griseoaurantiacus M045]
Length = 330
Score = 293 bits (749), Expect = 6e-77, Method: Composition-based stats.
Identities = 128/345 (37%), Positives = 198/345 (57%), Gaps = 21/345 (6%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ + EK I D+++ + ++ A G+ RVE++ ++G ++++
Sbjct: 5 MSALRGLVREKEISFDLLVEAIESALLIAYHRTDGSRRHARVELDRDSGHVTVWAK---- 60
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
E+ E+ L+ ++ P FGR+A +AKQVI+Q++R+AE D
Sbjct: 61 EDPED------LEEGQEPR---------EFDDTPSGFGRIAATTAKQVILQRLRDAEDDA 105
Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
E+ + G+I++G V++ + NV+VD+G + ++ E + E+ + G R++SY+
Sbjct: 106 TLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGESYQHGMRLRSYVVR 165
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S +
Sbjct: 166 VAKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEIAAIAREAGHRTKIAVRSTRSGL 225
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307
+ GAC+G G RV+ V+ EL EKIDIV WS D A V NAL PA V+ V +D
Sbjct: 226 NAKGACIGPMGGRVRNVMGELNGEKIDIVDWSDDPAEMVANALSPARVSAVDVVDLAARS 285
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
V VP QLSLAIG+ GQN RLA++LTGW IDI + E + R
Sbjct: 286 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEPAEPRD 330
>gi|284044673|ref|YP_003395013.1| NusA antitermination factor [Conexibacter woesei DSM 14684]
gi|283948894|gb|ADB51638.1| NusA antitermination factor [Conexibacter woesei DSM 14684]
Length = 503
Score = 293 bits (749), Expect = 7e-77, Method: Composition-based stats.
Identities = 140/365 (38%), Positives = 219/365 (60%), Gaps = 24/365 (6%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L +A EK+I + ++ + D++ A + G +VE++ E GD +++ L+
Sbjct: 4 EILDAVRGLAAEKNISSEKLMVALEDALLSAYKKQPGAAPYAQVEMDRELGDFTVW-ELK 62
Query: 68 VVEEVEN----YTCQISLKVARDRDPS-----------------IDIGGVVS-DPLPPMD 105
+ E++E+ +I DP + + + P D
Sbjct: 63 IPEDLEDQLITEQEEIIAAEFSGVDPETGEARELPEPELDFEKLAEYEDQIERVDVTPED 122
Query: 106 FGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGV 164
FGR+A Q+AKQVI+Q++REAERD + E++D+VGE+I+G V++ + +V L + +
Sbjct: 123 FGRIAAQTAKQVILQRIREAERDMMFEEYRDRVGELITGIVQQSDSRYTLVQLRERVEAL 182
Query: 165 IRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224
+ + E + E R+K+ I DV +GP +++SR P+ + LF +EVPEI +G+V
Sbjct: 183 LPKSEQVDGERYDHSQRIKAVIKDVSASTKGPSIIVSRRDPELIKALFELEVPEIADGLV 242
Query: 225 QVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSA 284
++ V+R+PG R+K+AV S +DPVGACVG RGSRV+ VV+ELR EKIDI+ ++ + A
Sbjct: 243 EITNVAREPGYRSKIAVVSHADGVDPVGACVGPRGSRVRMVVSELRGEKIDIIPYNDEPA 302
Query: 285 TFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344
FV AL PA V +V++D+D + VIVP +QLSLAIGR GQN RLA++LTGW IDI +E
Sbjct: 303 RFVAKALSPARVREVLVDDDGKQATVIVPDDQLSLAIGREGQNARLAARLTGWRIDIRSE 362
Query: 345 EEDSI 349
E +
Sbjct: 363 TEFAS 367
>gi|290957021|ref|YP_003488203.1| transcriptional termination/antitermination factor [Streptomyces
scabiei 87.22]
gi|260646547|emb|CBG69644.1| putative transcriptional termination/antitermination factor
[Streptomyces scabiei 87.22]
Length = 328
Score = 293 bits (749), Expect = 7e-77, Method: Composition-based stats.
Identities = 131/341 (38%), Positives = 195/341 (57%), Gaps = 23/341 (6%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ + EK I D+++ + ++ A G+ RVE+N ETG ++++
Sbjct: 5 MSALRGLVREKEISFDLLVEAIEAALLIAYHRTEGSRRHARVELNRETGHVTVW------ 58
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVS-DPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
A++ ++ G P DFGR+A +AKQVI+Q++R+AE D
Sbjct: 59 --------------AKEDPEDLEEGQEARAFDDTPSDFGRIAATTAKQVILQRLRDAEDD 104
Query: 129 RQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
E+ + G+I++G V++ + NV+VD+G + ++ E + E + G R++SY+
Sbjct: 105 ATLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGETYQHGMRLRSYVV 164
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S
Sbjct: 165 RVAKGVRGPSVTLSRTHPSLVKKLFALEVPEIADGSVEIAAIAREAGHRTKIAVRSTRSG 224
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVG 306
++ GAC+G G RV+ V+ EL EKIDIV WS D A V NAL PA V+KV +D
Sbjct: 225 LNAKGACIGPMGGRVRNVMGELNGEKIDIVDWSDDPAEMVANALSPARVSKVEVVDLAAR 284
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347
V VP QLSLAIG+ GQN RLA++LTGW IDI + E
Sbjct: 285 SARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEQ 325
>gi|149277310|ref|ZP_01883452.1| transcription elongation factor NusA [Pedobacter sp. BAL39]
gi|149232187|gb|EDM37564.1| transcription elongation factor NusA [Pedobacter sp. BAL39]
Length = 411
Score = 293 bits (749), Expect = 7e-77, Method: Composition-based stats.
Identities = 130/395 (32%), Positives = 227/395 (57%), Gaps = 10/395 (2%)
Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77
K+IDR V+SV+ + + R YGT + V +NP+ GD+ ++R +V+E+ E+
Sbjct: 17 KNIDRPTVISVLEEVFRSMLRKKYGTDENCDVIVNPDNGDLEIWRTRKVMEDGFSEDDDL 76
Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137
+I L + D +++G + + FGR A+ +A+Q ++ KV E E+D + ++KD+
Sbjct: 77 EIELAEVKLLDADMEVGDDYIEQITLESFGRRAILAARQTLVSKVLELEKDEIFKKYKDR 136
Query: 138 VGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196
VGEI++G V + + +++D ++ ++ + E I + + GD V++ I V P
Sbjct: 137 VGEIVTGEVYQVWKKETLVLDDEGNELMMPKTEQIPADYFKKGDTVRAVILKVDMVNATP 196
Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256
++++SR P F+ +LF +EVPEI++G++ +K + R+PG RAK+AV S D IDPVGACVG
Sbjct: 197 KIIISRIAPDFLQRLFEIEVPEIFDGLITIKKIVREPGERAKVAVESYDDRIDPVGACVG 256
Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316
M+GSR+ +V EL++E ID++ ++ + + ++ AL PA +T + LD++ V + +Q
Sbjct: 257 MKGSRIHGIVRELKNENIDVINFTNNISLYITRALSPAKITSIKLDDETKHASVYLKPDQ 316
Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376
+SLAIGR G N++LA +LTG+ ID+ E + + +D I L
Sbjct: 317 VSLAIGRGGHNIKLAGKLTGYEIDVYREAGEEDEDVDIEE-------FSDEIDSWIIDEL 369
Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411
A G + + + I E+ +EET E+
Sbjct: 370 KAIGCDTAKSVLALSIDELVKRTDLEEETIKEVMS 404
>gi|325286756|ref|YP_004262546.1| NusA antitermination factor [Cellulophaga lytica DSM 7489]
gi|324322210|gb|ADY29675.1| NusA antitermination factor [Cellulophaga lytica DSM 7489]
Length = 410
Score = 293 bits (749), Expect = 7e-77, Method: Composition-based stats.
Identities = 135/419 (32%), Positives = 230/419 (54%), Gaps = 15/419 (3%)
Query: 7 LELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
+E + + ++ + +K IDR +++++ + + A + +G+ + + INP+ GD+ ++
Sbjct: 1 MENIALIESFSEFKDDKFIDRVTLMAILEEVFRNALKKKFGSDDNFDIIINPDKGDLEIW 60
Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
R VVE+ VE +ISL AR +P ++G VS+ + +D GR A+ + +Q +I K
Sbjct: 61 RNRIVVEDGEVEEPNEEISLTDARKIEPDFEVGEDVSEEVKLIDLGRRAILALRQNLIAK 120
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGD 180
+ E + Y +FKD GEI + V + + VI VD ++ V+ +D I + R GD
Sbjct: 121 IHEHDNTTIYKQFKDLEGEIYTAEVHHIRHRAVILVDDEGNEIVMPKDRQIPSDFFRKGD 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
V+ I V + P +++SRT P+F+ +LF E+PE+++G++ +K R PG +AK+A
Sbjct: 181 NVRGIIESVELKGNKPSIIMSRTSPKFLEQLFFQEIPEVFDGLITIKKAVRIPGEKAKVA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S D IDPVGACVG++GSR+ +V EL +E ID+V W+ + V AL PA ++ V
Sbjct: 241 VDSYDDRIDPVGACVGVKGSRIHGIVRELGNENIDVVNWTSNPQLLVTRALSPAKISSVK 300
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
LD++ +V + +++S AIGR G N+RLA QLTG+ ID+ E + +F++
Sbjct: 301 LDDEKMTAQVYLKPDEVSRAIGRGGHNIRLAGQLTGYEIDVFREGVEEDVELTEFSD--- 357
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+D I G + ++A + ET +E+ +E LE
Sbjct: 358 ------EIDNWIIEEFKKIGLDTARSVLEQDSEDLAKRTDLEVETILEVVRILKEELED 410
>gi|322412488|gb|EFY03396.1| transcription elongation factor NusA [Streptococcus dysgalactiae
subsp. dysgalactiae ATCC 27957]
Length = 385
Score = 293 bits (749), Expect = 7e-77, Method: Composition-based stats.
Identities = 128/366 (34%), Positives = 209/366 (57%), Gaps = 15/366 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + EK ID+ ++ + +S++ A + YG +E N +T D +F + E
Sbjct: 4 EMLEAFRILEEEKHIDKADIIDAVTESLKSAYKRRYGQAESCVIEFNEKTADFQVFTVRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R R
Sbjct: 64 VVEEVFDSRLEISLKDALAISSAYELGDKIRFEESVNEFGRVAAQSAKQTIMEKMRRQMR 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ + E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR++ Y+Y
Sbjct: 124 EVTFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIEVYVY 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + +
Sbjct: 184 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG GS ++ V+++ E ID++ W D A F+ NA+ P
Sbjct: 244 VDAIGTIVGRGGSNIKKVISKFHPKRLDAKTGLEIPVEENIDVIQWVDDPAEFIYNAIAP 303
Query: 294 AIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V V+ D+D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + +
Sbjct: 304 AEVDMVLFDDDDLKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASDYDRLEA 363
Query: 353 KDFNER 358
+
Sbjct: 364 EKEAAM 369
>gi|154491955|ref|ZP_02031581.1| hypothetical protein PARMER_01585 [Parabacteroides merdae ATCC
43184]
gi|154088196|gb|EDN87241.1| hypothetical protein PARMER_01585 [Parabacteroides merdae ATCC
43184]
Length = 424
Score = 293 bits (749), Expect = 7e-77, Method: Composition-based stats.
Identities = 137/412 (33%), Positives = 238/412 (57%), Gaps = 12/412 (2%)
Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
A + E + + D +A E K+ID+D ++SV+ DS + ++GT + V INPE GD
Sbjct: 2 AKKEETISMIDTLAEFKELKNIDKDTMISVLEDSFRNVIAKMFGTDENYDVIINPEKGDF 61
Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
++R VV +E+E+ Q++L AR D ++G V+D + DFGR A+ + +Q +
Sbjct: 62 EIWRNRTVVADDELEDENLQLTLTEARKIDADCEVGEEVTDEVHFADFGRRAILNLRQTL 121
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLR 177
K+ E ++D + ++KDK+G II+ V +V +++ D ++ ++ + E I + R
Sbjct: 122 ASKILELQKDSLFAKYKDKIGNIIAADVYQVWKKEILLLDDEGNELLLPKTEQIPTDFYR 181
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
G+ V++ + V P+++LSRT F+ +LF +EVPEI +G++ +KA++R PG RA
Sbjct: 182 KGETVRAIVQRVDNYNNNPKIILSRTDKLFLQRLFELEVPEINDGLITIKAIARIPGERA 241
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV S D IDPVGACVGM+GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++
Sbjct: 242 KVAVESYDDRIDPVGACVGMKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKIS 301
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
+ ++E+ + EV + E++SLAIG+ G N++LA LT + ID+ + E + +E
Sbjct: 302 SIRVNEEEHKAEVYLRPEEVSLAIGKGGLNIKLACMLTEYAIDVFRDVEGADEEDIYLDE 361
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409
+ +D + L G + + + EI +E+T E+
Sbjct: 362 FSD------EIDSWVIEALKNIGCYTAKSVLAMNREEIVERADLEEQTVDEV 407
>gi|239928612|ref|ZP_04685565.1| transcription elongation factor NusA [Streptomyces ghanaensis ATCC
14672]
gi|291436937|ref|ZP_06576327.1| transcriptional termination [Streptomyces ghanaensis ATCC 14672]
gi|291339832|gb|EFE66788.1| transcriptional termination [Streptomyces ghanaensis ATCC 14672]
Length = 328
Score = 293 bits (749), Expect = 7e-77, Method: Composition-based stats.
Identities = 131/343 (38%), Positives = 197/343 (57%), Gaps = 21/343 (6%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ + EK I D+++ + ++ A G+ RVE+N ETG ++++
Sbjct: 5 MSALRGLVREKEISFDLLVEAIESALLIAYHRTEGSRRHARVELNRETGHVTVWAK---- 60
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
E+ E+ L+ ++ P FGR+A +AKQVI+Q++R+AE D
Sbjct: 61 EDPED------LEEGQEPR---------EFDDTPSGFGRIAATTAKQVILQRLRDAEDDA 105
Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
E+ + G+I++G V++ + NV+VD+G + ++ E + E+ G R++SY+
Sbjct: 106 TLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGESYPHGMRLRSYVVR 165
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S +
Sbjct: 166 VAKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEIAAIAREAGHRTKIAVRSTRSGL 225
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307
+ GAC+G G RV+ V+ EL EKIDIV WS D A V NAL PA V+KV +D
Sbjct: 226 NAKGACIGPMGGRVRNVMGELNGEKIDIVDWSDDPAEMVANALSPARVSKVEVVDMAARS 285
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350
V VP QLSLAIG+ GQN RLA++LTGW IDI + E +
Sbjct: 286 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEQAGE 328
>gi|330997781|ref|ZP_08321616.1| transcription termination factor NusA [Paraprevotella xylaniphila
YIT 11841]
gi|329569669|gb|EGG51434.1| transcription termination factor NusA [Paraprevotella xylaniphila
YIT 11841]
Length = 420
Score = 292 bits (748), Expect = 8e-77, Method: Composition-based stats.
Identities = 144/423 (34%), Positives = 235/423 (55%), Gaps = 11/423 (2%)
Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
A + E + + D A E K+IDR ++SV+ +S + L+G+ + V +NP+ GD
Sbjct: 2 AKKAETISLIDTFAEFKETKNIDRATLVSVLEESFRSVIAKLFGSDDNYDVIVNPDKGDF 61
Query: 61 SLFRLLEVVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
++R VV + E + +ISL AR D ++G VS+ + FGR A+ + +Q +
Sbjct: 62 EIYRNRTVVADGEVKDGNREISLTEARQIDEDYEVGEEVSENVDFAGFGRRAILTLRQTL 121
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177
K+ E E D Y ++KD+VGEI+S V + + + VD ++ ++ + E I + R
Sbjct: 122 ASKILELEHDSLYNKYKDRVGEIVSAEVYQIWKKEMLCVDDEGNELILPKTEQIPSDFYR 181
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
G+ V++ + V P+++LSRT P F+ +L EVPEI++G++ V+ ++R PG RA
Sbjct: 182 KGEAVRAVVARVDNTNNNPKIILSRTSPVFLQRLLEAEVPEIHDGLITVRKIARMPGERA 241
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV S D IDPVGACVG++GSRV +V ELR E ID++ ++ + + F+ AL PA V
Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRVHGIVRELRGENIDVINYTQNISLFITRALSPATVN 301
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
V + E+ + EV + +Q+SLAIG+ G N++LAS LT +TID+ E E + D
Sbjct: 302 SVRIHEEERKAEVYLNPDQVSLAIGKSGLNIKLASMLTEYTIDVFREIEGAEGEGDDIYL 361
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE-IQGRAREY 416
++D+ I L G +++ + S +EET E ++ A E+
Sbjct: 362 DEFVG----DIDQWIIDALKGIGMETAKDVLNAPREMLVSRADLEEETVDEVLRILAEEF 417
Query: 417 LEG 419
E
Sbjct: 418 EEE 420
>gi|312130305|ref|YP_003997645.1| nusa antitermination factor [Leadbetterella byssophila DSM 17132]
gi|311906851|gb|ADQ17292.1| NusA antitermination factor [Leadbetterella byssophila DSM 17132]
Length = 414
Score = 292 bits (748), Expect = 8e-77, Method: Composition-based stats.
Identities = 134/415 (32%), Positives = 237/415 (57%), Gaps = 9/415 (2%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
+L++ A EK+IDR +++++ D ++ R YG + + +NPE+GD+ ++R E
Sbjct: 5 DLIESFAEFAREKNIDRPTMIAILEDVLRTMIRKAYGEDHNFDIILNPESGDLEMWRKRE 64
Query: 68 VVEEVENY---TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
+V++ +I L A+ +P +IG V++P+ DFGR VQ+A+Q +IQKV++
Sbjct: 65 IVDDNSEDIWDHDKIPLSEAKKIEPDFEIGEEVAEPVKIEDFGRRIVQTARQTLIQKVKD 124
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVK 183
E++ Y ++KD+VGE+++ V ++ VI +D ++ + + E I ++ + G ++
Sbjct: 125 LEKEMLYDQYKDQVGELVTVEVYQILSREVICIDEEGNELSLPKGEQIPKDRFKKGSSIR 184
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+ I+ V P++ LSRT P F+ +LF +E+PEI +GI+ ++ + R+PG RAK+AV S
Sbjct: 185 AIIHKVEIHNGNPKLTLSRTSPVFLERLFELEIPEIQDGIISIRKIVREPGERAKVAVES 244
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
D IDPVGACVGM+GSR+ ++V EL +E ID++ W+ + + AL PA ++ V DE
Sbjct: 245 FDDRIDPVGACVGMKGSRIHSIVRELENENIDVIQWTDNINLLISRALSPAKISNVRFDE 304
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
+ R+ V + +Q+SLAIG+ G N++LAS+L G ID+ + + + E
Sbjct: 305 NAERVSVFLKPDQVSLAIGKGGLNIKLASKLIGLEIDVFRDIDGVVEE-----EDVDLME 359
Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
++E I G + + V ++ +EET E+ ++ E
Sbjct: 360 FTDEIEEWILLEFRKIGLDTAKSVLNVPKEDLVRRTPLEEETIEEVFDILKKEFE 414
>gi|34540099|ref|NP_904578.1| transcription elongation factor NusA [Porphyromonas gingivalis W83]
gi|188994218|ref|YP_001928470.1| transcription elongation factor NusA [Porphyromonas gingivalis ATCC
33277]
gi|34396410|gb|AAQ65477.1| N utilization substance protein A, putative [Porphyromonas
gingivalis W83]
gi|188593898|dbj|BAG32873.1| putative nitrogen utilization substance protein A [Porphyromonas
gingivalis ATCC 33277]
Length = 444
Score = 292 bits (748), Expect = 9e-77, Method: Composition-based stats.
Identities = 128/443 (28%), Positives = 241/443 (54%), Gaps = 15/443 (3%)
Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
A + E + + +++A E K+ID++ +++V+ DS + ++G+ + V INPE GD
Sbjct: 2 AKKQETISMIESLAEFKELKNIDKETMINVLEDSFRNVLAKIFGSDDNFDVIINPEKGDF 61
Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
++R +VVE+ VE+ + ++SL A + DP ++G V+D + FGR A+ + +Q +
Sbjct: 62 EIWRTRQVVEDGAVEDESREVSLSDAHEIDPEAEVGEEVTDSVNFASFGRRAILNLRQAL 121
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177
K+ E +++ + F +++G++IS V + + +++D ++ ++ + E I + R
Sbjct: 122 SSKIMELQKENLFNTFTERIGQLISAEVYQVWKREALLIDDDGNELLMPKSEQIPSDFFR 181
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
G+ V + + V P++++SRT +F+ +LF + VPEI +G++ ++ V+R PG RA
Sbjct: 182 KGETVHAVVERVENANNNPKIIVSRTSGEFLKRLFELNVPEIADGLITIRCVARIPGERA 241
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV S D IDPVGACVGM GSR++ +V ELR E ID+ ++ ++A F+ AL PA ++
Sbjct: 242 KMAVESYDDRIDPVGACVGMNGSRIRGIVRELRGENIDVTQYTTNTALFIQRALSPARIS 301
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
+ L E + EV + E++ LAIG+ N++LAS LTG+ I++ + +D +E
Sbjct: 302 SIRLLEAEHKAEVFLRPEEVPLAIGKNASNIKLASGLTGYQIEVFRDIDDMDEEDIYLDE 361
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
+D+ I L G + + ++ ++ T + G
Sbjct: 362 ------FNDEIDQWIIDLFKNIGCNTAKSVLSKNREDLIKETDLEDSTIDYVLGVLSAEF 415
Query: 418 EGIDITLQKKIRELGVSEELCSI 440
D + + S++L +
Sbjct: 416 ADEDQVTDNQSTD---SDDLDNF 435
>gi|302558072|ref|ZP_07310414.1| transcription termination factor NusA [Streptomyces griseoflavus
Tu4000]
gi|302475690|gb|EFL38783.1| transcription termination factor NusA [Streptomyces griseoflavus
Tu4000]
Length = 332
Score = 292 bits (748), Expect = 9e-77, Method: Composition-based stats.
Identities = 129/345 (37%), Positives = 196/345 (56%), Gaps = 23/345 (6%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ + EK I ++++ + ++ A G+ RVE+N ETG ++++
Sbjct: 5 MSALRLLVREKEISLELLVEAIESALLIAYHRTEGSRRHARVELNRETGHVTVW------ 58
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVV-SDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
A++ ++ G P FGR+A +AKQVI+Q++R+AE D
Sbjct: 59 --------------AKEDPEDLEEGQEAREFDDTPSGFGRIAATTAKQVILQRLRDAEDD 104
Query: 129 RQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
E+ + G+I++G V++ + NV+VD+G + ++ E + E G R++SY+
Sbjct: 105 ATLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGETYPHGMRLRSYVV 164
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S
Sbjct: 165 RVAKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEISAIAREAGHRTKIAVRSTRSG 224
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVG 306
++ GAC+G G RV+ V+ EL EKIDIV WS D A V NAL PA V++V + D
Sbjct: 225 LNAKGACIGPMGGRVRNVMGELNGEKIDIVDWSDDPAEMVANALSPARVSRVDIVDMAAR 284
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351
V VP QLSLAIG+ GQN RLA++LTGW IDI + E S ++
Sbjct: 285 SARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEQSGDQ 329
>gi|119717416|ref|YP_924381.1| transcription elongation factor NusA [Nocardioides sp. JS614]
gi|119538077|gb|ABL82694.1| transcription termination factor NusA [Nocardioides sp. JS614]
Length = 327
Score = 292 bits (748), Expect = 9e-77, Method: Composition-based stats.
Identities = 131/344 (38%), Positives = 198/344 (57%), Gaps = 24/344 (6%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ I + EK I DV++ + ++ A G RV ++ ++G +++
Sbjct: 5 MSILRMLEREKEISFDVLVEAIEQALLTAYHKSPGAHEQARVVLDRKSGHVTVL------ 58
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
A + D + G D P FGR+A +AKQ+++Q++R+AE D
Sbjct: 59 --------------ASEVDEEGNAVGEYDD--TPAGFGRIAATTAKQIMLQRLRDAEDDV 102
Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
++ EF K G+IISG +++ +V+VDLG + ++ E + E G R+K +
Sbjct: 103 RFGEFSGKEGDIISGIIQQGRNPDDVMVDLGKLEALLPVGERVPGERYDHGTRIKCLVVS 162
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
VR+ RGPQ+ LSR+HP + KLF +EVPEI +G V++ A++R+ G R KLAV S+ +
Sbjct: 163 VRKGMRGPQITLSRSHPNLVKKLFALEVPEIADGTVEIAAIAREAGHRTKLAVRSTVPGV 222
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307
+ GAC+G GSRV+AV++EL EKIDIV WS D A V +AL PA VT V + D
Sbjct: 223 NAKGACIGPMGSRVRAVMSELHGEKIDIVDWSEDPAEMVAHALSPARVTSVEIVDAAAKS 282
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351
V+VP QLSLAIG+ GQN RLA++LTGW IDI ++E ++ +
Sbjct: 283 ARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDEAEAGSD 326
>gi|21905243|gb|AAM80105.1| putative transcription termination-antitermination factor
[Streptococcus pyogenes MGAS315]
Length = 381
Score = 292 bits (748), Expect = 9e-77, Method: Composition-based stats.
Identities = 129/361 (35%), Positives = 208/361 (57%), Gaps = 15/361 (4%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+L+ + EK ID+ ++ + +S++ A + YG +E N +T D +F + EV
Sbjct: 1 MLEAFRILEEEKHIDKADIIDAVTESLKSAYKRRYGQSESCVIEFNEKTADFQVFTVREV 60
Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
VEEV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R R+
Sbjct: 61 VEEVFDSRLEISLKDALAISSAYELGDKIRFEESVNEFGRVAAQSAKQTIMEKMRRQMRE 120
Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
+ E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR+ Y+Y
Sbjct: 121 VMFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIDVYVYK 180
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + ++
Sbjct: 181 VENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPNV 240
Query: 249 DPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRPA 294
D +G VG GS ++ V+++ E ID++ W D A F+ NA+ PA
Sbjct: 241 DAIGTIVGRGGSNIKKVISKFHPKRVDAKTGLEIPVEENIDVIQWVDDPAEFIYNAIAPA 300
Query: 295 IVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353
V V+ DED+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E +
Sbjct: 301 EVDMVLFDDEDLKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYDRLEAE 360
Query: 354 D 354
Sbjct: 361 K 361
>gi|297202732|ref|ZP_06920129.1| transcription termination factor NusA [Streptomyces sviceus ATCC
29083]
gi|297148179|gb|EFH28866.1| transcription termination factor NusA [Streptomyces sviceus ATCC
29083]
Length = 328
Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats.
Identities = 129/343 (37%), Positives = 196/343 (57%), Gaps = 21/343 (6%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ + EK I D+++ + ++ A G+ RV+++ ++G + ++
Sbjct: 5 MSALRGLVREKEISFDLLVEAIESALLIAYHRTEGSHRHARVKLDRDSGHVVVWAK---- 60
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
E+ E+ L+ ++ P DFGR+A +AKQVI+Q++R+AE D
Sbjct: 61 EDPED------LEEGQEPR---------EFDDTPSDFGRIAATTAKQVILQRLRDAEDDA 105
Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
E+ + G+I+ G V++ + NV+VD+G + ++ E + E G R++SY+
Sbjct: 106 TLGEYAGREGDIVMGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGETYPHGMRLRSYVVR 165
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V R RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S +
Sbjct: 166 VARGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEIAAIAREAGHRTKIAVRSTRSGL 225
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307
+ GAC+G G RV+ V+ EL EKIDIV WS D A V NAL PA V+KV +D
Sbjct: 226 NAKGACIGPMGGRVRNVMGELNGEKIDIVDWSDDPAEMVANALSPARVSKVEVVDMAARS 285
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350
V VP QLSLAIG+ GQN RLA++LTGW IDI + E + +
Sbjct: 286 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEQAGD 328
>gi|332295450|ref|YP_004437373.1| NusA antitermination factor [Thermodesulfobium narugense DSM 14796]
gi|332178553|gb|AEE14242.1| NusA antitermination factor [Thermodesulfobium narugense DSM 14796]
Length = 340
Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats.
Identities = 131/337 (38%), Positives = 217/337 (64%), Gaps = 2/337 (0%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
L + + + EK + ++S + ++ + + Y + ++ ++I P+TG + + VV
Sbjct: 5 LHVLEQLEKEKGVSLPAMISALESALLASYKKYYPS-KNVSLKIIPDTGVLEIVVKKTVV 63
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
++V N +ISL AR+ DP ++IG + + P +FGR+A +AKQV QK++EAERD
Sbjct: 64 DKVNNIFDEISLTQAREIDPKVNIGETIEIQVDPKNFGRIAALTAKQVWQQKIKEAERDA 123
Query: 130 QYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDV 189
+ EFKD+V +ISG + R E N IV LG ++G++ + ET+ ++ +R Y+ V
Sbjct: 124 VFEEFKDRVFGVISGKILRPEGKNWIVQLGRAEGILPQKETVFQDKYNINERYVFYVLSV 183
Query: 190 RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSID 249
+++++ +++LSR+HP + ++F +E EI +GIV++ +++RDPGSR K+AV S D +D
Sbjct: 184 KKQKKDVEIILSRSHPNLVKRIFELESAEIRSGIVEIVSIARDPGSRTKIAVLSRDPHVD 243
Query: 250 PVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRI 308
P+G C+G+R SR+Q V ELR EKID+++++PD ++ +AL PA + +V + D+
Sbjct: 244 PLGVCLGIRNSRIQNVTKELRGEKIDVILYNPDPKIYIASALSPAKIKRVEILDQVKKES 303
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345
V V K QLSLAIG+ QNVRLA +LTG+ IDI EE
Sbjct: 304 RVYVDKSQLSLAIGKDAQNVRLAHKLTGYKIDIKIEE 340
>gi|294631732|ref|ZP_06710292.1| transcription termination factor NusA [Streptomyces sp. e14]
gi|292835065|gb|EFF93414.1| transcription termination factor NusA [Streptomyces sp. e14]
Length = 328
Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats.
Identities = 131/343 (38%), Positives = 194/343 (56%), Gaps = 21/343 (6%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ + EK I D+++ + ++ A G+ RVE+N ETG ++++
Sbjct: 5 MSALRGLVREKEISFDLLVEAIESALLIAYHRTEGSRRHARVELNRETGHVTVWAK---- 60
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
E+ E+ L+ + P FGR+A +AKQVI+Q++R+AE D
Sbjct: 61 EDPED------LEEGQAPR---------EFDDTPSGFGRIAATTAKQVILQRLRDAEDDA 105
Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
E+ + G+I++G V++ + NV+VD+G + ++ E + E G R++SY+
Sbjct: 106 TLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGETYPHGMRLRSYVVR 165
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S +
Sbjct: 166 VAKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEIAAIAREAGHRTKIAVRSTRSGL 225
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307
+ GAC+G G RV+ V+ EL EKIDIV WS D A V NAL PA V KV +D
Sbjct: 226 NAKGACIGPMGGRVRNVMGELNGEKIDIVDWSDDPAEMVANALSPARVHKVEVVDLAARS 285
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350
V VP QLSLAIG+ GQN RLA++LTGW IDI + E +
Sbjct: 286 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEQAGE 328
>gi|218264757|ref|ZP_03478469.1| hypothetical protein PRABACTJOHN_04178 [Parabacteroides johnsonii
DSM 18315]
gi|218221806|gb|EEC94456.1| hypothetical protein PRABACTJOHN_04178 [Parabacteroides johnsonii
DSM 18315]
Length = 424
Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats.
Identities = 138/429 (32%), Positives = 241/429 (56%), Gaps = 12/429 (2%)
Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
A + E + + D +A E K+ID+D ++SV+ DS + ++GT + V INPE GD
Sbjct: 2 AKKEETISMIDTLAEFKELKNIDKDTMISVLEDSFRNVIAKMFGTDENYDVIINPEKGDF 61
Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
++R VV +E+E+ Q++L AR D ++G V+D + DFGR A+ + +Q +
Sbjct: 62 EIWRNRTVVADDELEDENLQLTLTEARKIDADCEVGEEVTDEVHFADFGRRAILNLRQTL 121
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLR 177
K+ E ++D + ++KDK+G II+ V +V +++ D ++ ++ + E I + R
Sbjct: 122 ASKILELQKDSLFAKYKDKIGNIIAADVYQVWKKEILLLDDEGNELLLPKTEQIPTDFYR 181
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
G+ V++ + V P+++LSRT F+ +LF +EVPEI +G++ +KA++R PG RA
Sbjct: 182 KGETVRAIVQRVDNYNNNPKIILSRTDKLFLQRLFELEVPEINDGLITIKAIARIPGERA 241
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV S D IDPVGACVGM+GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++
Sbjct: 242 KIAVESYDDRIDPVGACVGMKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKIS 301
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
+ ++E+ + EV + +++SLAIG+ G N++LA LT + ID+ + E + +E
Sbjct: 302 SIRVNEEERKAEVYLHPDEVSLAIGKGGLNIKLACMLTEYAIDVFRDLEGADEEDIYLDE 361
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
+ +D + L G + + + EI +E+T E+
Sbjct: 362 FSD------EIDSWVIEALKNIGCYTAKSVLAMSREEIIERADLEEQTVDEVLAILSAEF 415
Query: 418 EGIDITLQK 426
E Q+
Sbjct: 416 EEEQDETQE 424
>gi|116515364|ref|YP_815985.1| transcription elongation factor NusA [Streptococcus pneumoniae D39]
gi|116075940|gb|ABJ53660.1| transcription termination factor NusA [Streptococcus pneumoniae
D39]
Length = 378
Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats.
Identities = 127/360 (35%), Positives = 210/360 (58%), Gaps = 15/360 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E
Sbjct: 4 EMLEAFRILEEDKRIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 64 VVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y
Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + +
Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P
Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKNDRMVPIEENIDVIEWVADPAEFIYNAIAP 303
Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 304 AEVDQVIFDESDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMED 363
>gi|32473747|ref|NP_866741.1| transcription elongation factor NusA [Rhodopirellula baltica SH 1]
gi|32444283|emb|CAD74281.1| N utilization substance protein A [Rhodopirellula baltica SH 1]
Length = 498
Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats.
Identities = 152/407 (37%), Positives = 236/407 (57%), Gaps = 37/407 (9%)
Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
N ++L+ D++ +K+ID +++ + ++Q AA+ YG SD+ V I+ + G I+
Sbjct: 1 MNPQDILRYVDSLHRDKNIDPELLFQAIESALQSAAKKQYGEESDVIVSISRDNGAIAA- 59
Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+L +PL GR+ Q+AKQVIIQKVR
Sbjct: 60 ----------------TLA---------------GEPLGDDQIGRIGAQTAKQVIIQKVR 88
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183
EAERD LE++D++GEI+SG + R + G V+LGN + ++ R E I E+L +RV+
Sbjct: 89 EAERDALMLEYRDQIGEIVSGMIGRADGGVATVNLGNVEAILPRSEQIPGESLHANERVR 148
Query: 184 SYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
+ +++VR +V+LSRT PQF+ +LF E+PE+ +G++ +K++SR+PG R+K+AV
Sbjct: 149 AIVFEVRPSGGNRVRVVLSRTRPQFVQRLFEQEIPELNDGVIAIKSISREPGYRSKVAVS 208
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
S D IDP+ CVG RGSR++AV EL E ID+V + D + NAL+PA V +V+L
Sbjct: 209 SEDQQIDPISVCVGYRGSRIKAVREELAGEHIDVVRYDSDPEVLIPNALQPAEVDQVLLC 268
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
+ +GR V+V ++QLSLAIGRRGQNVRLAS+L GW I+I+T E ++ +Q
Sbjct: 269 DMIGRAIVLVQEDQLSLAIGRRGQNVRLASKLCGWDIEIMTNAELEEQIERAVGGFSQIP 328
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409
+ E IA LV +G+ ++L+ ++ + G E I
Sbjct: 329 ----GITEEIAQALVEQGYLSYDDLSVIEPDLFMEMSGLSEADVDRI 371
>gi|312880100|ref|ZP_07739900.1| NusA antitermination factor [Aminomonas paucivorans DSM 12260]
gi|310783391|gb|EFQ23789.1| NusA antitermination factor [Aminomonas paucivorans DSM 12260]
Length = 375
Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats.
Identities = 127/337 (37%), Positives = 220/337 (65%), Gaps = 3/337 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
+ ++ + EK + +++ S + ++ A + G + V ++ E G+ISL + +
Sbjct: 6 DFVRALRQIESEKGLSEEIIASSLEAALVSAYKKFKGGNQTVEVFLDFENGEISLCEVRQ 65
Query: 68 VVEEVENYTCQISLKVARDRD-PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
VV E+EN +++L A ++ G V+ + P +FGR+A Q+A+QVIIQ++++AE
Sbjct: 66 VVGEIENPDQEVTLDEAHAMGFADVESGDVIRIEVFPENFGRIAAQTARQVIIQRLKDAE 125
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSY 185
R + EF D++G++++G++ + E ++V + ++ ++ R+E I E PGDR+K +
Sbjct: 126 RQVIFEEFADRIGDLVTGSIFKTEGDQILVRVNERTEAILPREERIVGEAYHPGDRLKFF 185
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ DVR+ RGP++++SRTHP + +L +E+PEI G ++++ + R+ G+RAK+AV S D
Sbjct: 186 LLDVRQTTRGPRIVVSRTHPGLLRRLLELEIPEIQEGTIEIRNIVREAGARAKVAVASLD 245
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDED 304
+++DPVGACVG RG+R++++ EL E+ID++VWS D +V NAL PA + K+ + E
Sbjct: 246 TNVDPVGACVGSRGTRIKSISGELGGERIDVIVWSSDPLAYVRNALSPAKIAKIEPILEQ 305
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
+ V V +QLSL+IG+ GQNVRLA++LTGW IDI
Sbjct: 306 EKALRVFVRPDQLSLSIGKAGQNVRLAARLTGWKIDI 342
>gi|282857788|ref|ZP_06266997.1| transcription termination factor NusA [Pyramidobacter piscolens
W5455]
gi|282584458|gb|EFB89817.1| transcription termination factor NusA [Pyramidobacter piscolens
W5455]
Length = 364
Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats.
Identities = 137/340 (40%), Positives = 213/340 (62%), Gaps = 5/340 (1%)
Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66
++ L + E+ + +V+ S + ++ A R D V I+ TG +S+F +
Sbjct: 5 VDFLGALKQLGEERGLSEEVIFSSIEAALALAYRKFRDGKFDPVVAIDRATGSVSIFDVR 64
Query: 67 EVVEEVENYTCQISLKVARDR-DPSIDIGGVVSDPL--PPMDFGRVAVQSAKQVIIQKVR 123
V+ + +ISL AR P + G V P+ P FGR+A Q+A+QVI Q+++
Sbjct: 65 RAVDAETHSDSEISLAEARALGYPDVREGDSVKVPVLEHPKSFGRIAAQTARQVITQRLK 124
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRV 182
+AER+ Y EF DK+G++I+ T+ + E ++V L S+ V+ R+E I+ E PG+
Sbjct: 125 DAEREIVYNEFNDKIGDLITATIFKAENDQILVRLSERSEAVLPREERIAGEVYTPGESK 184
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
K ++ DVR+ RGP++++SRTHP + KL +E+PEI++G V++K + R+ G+RAK+AV
Sbjct: 185 KFFLLDVRQTGRGPRIVVSRTHPGLLRKLLELEIPEIHDGTVEIKGIVREAGARAKVAVA 244
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
S+D ++D VGACVG G+R++++ +L DEKIDI+VW+ D F+ NAL PA VT V
Sbjct: 245 STDPAVDSVGACVGNSGARIRSISADLCDEKIDIIVWNEDPLEFIRNALSPARVTGVEAV 304
Query: 303 E-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
E +V P +QLSLAIG+ GQNVRLA++LTGW +DI
Sbjct: 305 EGQDRTAKVYAPADQLSLAIGKAGQNVRLAARLTGWKVDI 344
>gi|295132451|ref|YP_003583127.1| transcription elongation factor NusA [Zunongwangia profunda SM-A87]
gi|294980466|gb|ADF50931.1| transcription elongation factor NusA [Zunongwangia profunda SM-A87]
Length = 410
Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats.
Identities = 137/419 (32%), Positives = 234/419 (55%), Gaps = 15/419 (3%)
Query: 7 LELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
+E L + D+ + +K IDR +++++ D + A + YG + + +NP+ GD+ ++
Sbjct: 1 MENLALIDSFSEFKDDKLIDRVTLMAILEDVFRNALKKKYGEDDNFDIIVNPDKGDLEIW 60
Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
R VV + VE+ +ISL AR +P ++G VS+ + D GR A+ + +Q +I K
Sbjct: 61 RNRVVVADGEVEDPNQEISLAEARKIEPDFEVGEDVSEEVKLKDLGRRAILALRQNLISK 120
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGD 180
+ E + Y +FKD GEI + V + + +I +D ++ V+ +D I + R G+
Sbjct: 121 IHEHDNTNIYKQFKDLEGEIYTAEVHHIRHRAIILLDDEGNEIVLPKDRQIPSDFFRKGE 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
V+ I V + P ++LSRT P F+ KLF E+PE+++G++ +K V R PG +AK+A
Sbjct: 181 NVRGVIESVELKGNKPSIILSRTAPAFLEKLFEQEIPEVFDGLITIKKVVRVPGEKAKVA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S D IDPVGACVGM+GSR+ ++V EL +E ID++ ++ + F+ AL PA +T +
Sbjct: 241 VDSYDDRIDPVGACVGMKGSRIHSIVRELGNENIDVINYTNNDQLFITRALSPAKITSIK 300
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DE+ R EV++ E++S AIGR G N+RLA QLTG+ ID+ E + +F++
Sbjct: 301 IDEENKRAEVMLKPEEVSKAIGRGGHNIRLAGQLTGYEIDVFREGVEEDVELSEFSD--- 357
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+++ + G + + ++++ +EET E+ RE E
Sbjct: 358 ------EIEDWVIKEFAKIGLDTAKSILEQDVNDLIKRTDLEEETVREVLKVLREEFEE 410
>gi|256838936|ref|ZP_05544446.1| transcription termination factor NusA [Parabacteroides sp. D13]
gi|262382600|ref|ZP_06075737.1| transcription termination factor NusA [Bacteroides sp. 2_1_33B]
gi|301308163|ref|ZP_07214117.1| transcription termination factor NusA [Bacteroides sp. 20_3]
gi|256739855|gb|EEU53179.1| transcription termination factor NusA [Parabacteroides sp. D13]
gi|262295478|gb|EEY83409.1| transcription termination factor NusA [Bacteroides sp. 2_1_33B]
gi|300833633|gb|EFK64249.1| transcription termination factor NusA [Bacteroides sp. 20_3]
Length = 421
Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats.
Identities = 139/412 (33%), Positives = 240/412 (58%), Gaps = 12/412 (2%)
Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
A + E + + D +A E K+ID+D ++SV+ DS + ++GT + V INPE GD
Sbjct: 2 AKKEETISMIDTLAEFKELKNIDKDTMISVLEDSFRNVIAKMFGTDENYDVIINPEKGDF 61
Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
++R VV +E+E+ Q++L AR D ++G V+D + DFGR A+ + +Q +
Sbjct: 62 EIWRNRTVVADDELEDENLQLTLTEARKIDADCEVGEEVTDEVHFADFGRRAILNLRQTL 121
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLR 177
K+ E ++D Y ++KDK+G II+ V +V +++ D ++ ++ + E I + R
Sbjct: 122 ASKILELQKDSLYAKYKDKIGHIIAAEVYQVWKKEILLLDDDGNELLLPKSEQIPTDFYR 181
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
G+ V++ + V P++LLSRT F+ +LF +EVPEI +G++ +KA++R PG RA
Sbjct: 182 KGETVRAIVQRVDNYNNNPKILLSRTDKVFLQRLFELEVPEINDGLITIKAIARIPGERA 241
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV S D IDPVGACVGM+GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++
Sbjct: 242 KVAVESYDDRIDPVGACVGMKGSRIHGIVRELRNENIDVINYTSNLSLFIQRALSPAKIS 301
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
+ ++E+ + EV + E++SLAIG+ G N++LA LT +TID+ + E + +E
Sbjct: 302 SIRVNEEEKKAEVYLRPEEVSLAIGKGGLNIKLACMLTEYTIDVFRDIEGADEEDIYLDE 361
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409
+ +D + L G + + + +EI +E+T ++
Sbjct: 362 FSD------EIDSWVIDALKNIGCYTAKSVLAMNRNEIIERADLEEQTVDDL 407
>gi|302537260|ref|ZP_07289602.1| transcription termination factor NusA [Streptomyces sp. C]
gi|302446155|gb|EFL17971.1| transcription termination factor NusA [Streptomyces sp. C]
Length = 333
Score = 291 bits (746), Expect = 2e-76, Method: Composition-based stats.
Identities = 130/339 (38%), Positives = 194/339 (57%), Gaps = 21/339 (6%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ + EK I D+++ + ++ A G+ RV ++ G + ++
Sbjct: 5 MSALRGLVREKEISFDLLVEAIESALLIAYHRTEGSFRRARVVLDRTNGHVVVWAT---- 60
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
E+ L+ ++ P DFGR+A +AKQVI+Q++R+AE D
Sbjct: 61 ---EDPR---DLEEGQEPK---------EFDDTPSDFGRIAATTAKQVILQRLRDAEDDL 105
Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
+ EF + G++I+G V++ + NV+VD+G + ++ E + E G R+K+Y+
Sbjct: 106 TFGEFAGREGDVITGVVQQGKDPKNVLVDIGKLEAILPVQEQVPGEEYTHGLRLKTYVVR 165
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S +
Sbjct: 166 VAKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEISAIAREAGHRTKIAVRSTRSGL 225
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307
+P GAC+G G+RV+ V+ EL EKIDIV WS D A V NAL PA V+KV +D D
Sbjct: 226 NPKGACIGPMGARVRNVMAELHGEKIDIVDWSDDPAEMVANALSPARVSKVEVVDWDTRS 285
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346
V VP QLSLAIG+ GQN RLA++LTGW IDI + E
Sbjct: 286 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTE 324
>gi|327542469|gb|EGF28948.1| transcription elongation factor NusA [Rhodopirellula baltica WH47]
Length = 498
Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats.
Identities = 152/407 (37%), Positives = 236/407 (57%), Gaps = 37/407 (9%)
Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
N ++L+ D++ +K+ID +++ + ++Q AA+ YG SD+ V I+ + G I+
Sbjct: 1 MNPQDILRYVDSLHRDKNIDPELLFQAIESALQSAAKKQYGEESDVIVSISRDNGAIAA- 59
Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+L +PL GR+ Q+AKQVIIQKVR
Sbjct: 60 ----------------TLA---------------GEPLGDDQIGRIGAQTAKQVIIQKVR 88
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183
EAERD LE++D++GEI+SG + R + G V+LGN + ++ R E I E+L +RV+
Sbjct: 89 EAERDALMLEYRDQIGEIVSGMIGRADGGVATVNLGNVEAILPRSEQIPGESLHANERVR 148
Query: 184 SYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
+ +++VR +V+LSRT PQF+ +LF E+PE+ +G++ +K++SR+PG R+K+AV
Sbjct: 149 AIVFEVRPSGGNRVRVVLSRTRPQFVQRLFEQEIPELNDGVIAIKSISREPGYRSKVAVS 208
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
S D IDP+ CVG RGSR++AV EL E ID+V + D + NAL+PA V +V+L
Sbjct: 209 SEDQQIDPISVCVGYRGSRIKAVREELAGEHIDVVRYDSDPEVLIPNALQPAEVDQVLLC 268
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
+ +GR V+V ++QLSLAIGRRGQNVRLAS+L GW I+I+T E ++ +Q
Sbjct: 269 DMIGRAIVLVQEDQLSLAIGRRGQNVRLASKLCGWDIEIMTNAELEEQIERAVGGFSQIP 328
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409
+ E IA LV +G+ ++L+ ++ + G E I
Sbjct: 329 ----GITEEIAQALVEQGYLSYDDLSVIEPDLFMEMSGLSEADVDRI 371
>gi|332881709|ref|ZP_08449357.1| transcription termination factor NusA [Capnocytophaga sp. oral
taxon 329 str. F0087]
gi|332680348|gb|EGJ53297.1| transcription termination factor NusA [Capnocytophaga sp. oral
taxon 329 str. F0087]
Length = 420
Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats.
Identities = 141/412 (34%), Positives = 231/412 (56%), Gaps = 10/412 (2%)
Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
A + E + + D A E K+IDR ++SV+ +S + L+G+ + V +NP+ GD
Sbjct: 2 AKKAETISLIDTFAEFKETKNIDRATLVSVLEESFRSVIAKLFGSDDNYDVIVNPDKGDF 61
Query: 61 SLFRLLEVVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
++R VV + E + +ISL AR D ++G VS+ + FGR A+ + +Q +
Sbjct: 62 EIYRNRTVVADGEVKDDNREISLTEARRIDEDYEVGEEVSENVDFAKFGRRAILTLRQTL 121
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177
K+ E E D Y ++KD+VGEI+S V + + + VD ++ ++ + E I + R
Sbjct: 122 ASKILELEHDSLYNKYKDRVGEIVSAEVYQIWKKEMLCVDDEGNELILPKTEQIPSDFYR 181
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
G+ V++ + V P+++LSRT P F+ +L EVPEI++G++ V+ ++R PG RA
Sbjct: 182 KGEAVRAVVARVDNTNNNPKIILSRTSPVFLQRLLEAEVPEIHDGLITVRKIARMPGERA 241
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV S D IDPVGACVG++GSRV +V ELR E ID++ ++ + + F+ AL PA V
Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRVHGIVRELRGENIDVINYTQNISLFITRALSPAAVN 301
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
V + E+ + EV + +Q+SLAIG+ G N++LAS LT +TID+ E E + D
Sbjct: 302 SVRIHEEEHKAEVYLNPDQVSLAIGKSGLNIKLASMLTEYTIDVFREIEGAEGEGDDIYL 361
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409
++D+ I L + G +++ + S +EET E+
Sbjct: 362 DEFVG----DIDQWIIDALKSIGMETAKDVLNAPREMLVSRADLEEETVDEV 409
>gi|271963647|ref|YP_003337843.1| transcription elongation factor NusA [Streptosporangium roseum DSM
43021]
gi|270506822|gb|ACZ85100.1| transcription elongation factor NusA [Streptosporangium roseum DSM
43021]
Length = 331
Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats.
Identities = 124/339 (36%), Positives = 201/339 (59%), Gaps = 23/339 (6%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ + ++ EK I D+V+ + D++ A G + R E++ ++G +++F
Sbjct: 1 MSVLRSLEREKDISFDLVVKAIEDALLIAYFRSEGAAAKARAELDRQSGHVTIFA----- 55
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
E+++ + ++ R+ D P +F R+A +AKQVI+Q++R+AE +
Sbjct: 56 AEIDDESGEVL----REFDD------------TPGNFSRIAATTAKQVILQQLRDAEDEI 99
Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
+ EF + GE+++G +++ + V+VDLG + V+ +E + E G+R++ Y+
Sbjct: 100 NFGEFASREGELVAGVIQQGKDPRVVLVDLGKIEAVLPHNEQVPGEEYVHGERLRCYVVQ 159
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V++ +GP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S +
Sbjct: 160 VKKGHKGPSVTLSRTHPGLVKKLFALEVPEIADGTVEIAAIAREAGHRTKIAVRSRRPGV 219
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307
+ GAC+G GSRV+ V+ EL EKIDI+ WS D A FV NAL P+ V+ V +D +
Sbjct: 220 NAKGACIGPMGSRVRNVMAELHGEKIDIIDWSEDPAEFVGNALSPSRVSHVEVIDAEGRA 279
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346
V VP QLSLAIG+ GQN RLA++LTGW IDI + +
Sbjct: 280 ARVTVPDYQLSLAIGKEGQNARLANRLTGWRIDIRPDTQ 318
>gi|324992028|gb|EGC23950.1| N utilization substance protein A [Streptococcus sanguinis SK405]
Length = 420
Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats.
Identities = 135/414 (32%), Positives = 223/414 (53%), Gaps = 16/414 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E
Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + ++ + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELRDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y
Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + +
Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P
Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305
Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEMEA 365
Query: 353 KDFNERTQFFMQAINVDEIIAHLLVA-EGFADVEELACVKISEIASIEGFDEET 405
+ + I D + V+ D + A + E A IE EE
Sbjct: 366 ANELGGFAQEAEEILADAAVLETEVSAAEATDFDAAAEETVLETAGIESEAEEL 419
>gi|150010113|ref|YP_001304856.1| transcription elongation factor NusA [Parabacteroides distasonis
ATCC 8503]
gi|255012627|ref|ZP_05284753.1| transcription elongation factor NusA [Bacteroides sp. 2_1_7]
gi|298374483|ref|ZP_06984441.1| transcription termination factor NusA [Bacteroides sp. 3_1_19]
gi|149938537|gb|ABR45234.1| putative nitrogen utilization substance protein [Parabacteroides
distasonis ATCC 8503]
gi|298268851|gb|EFI10506.1| transcription termination factor NusA [Bacteroides sp. 3_1_19]
Length = 421
Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats.
Identities = 139/412 (33%), Positives = 240/412 (58%), Gaps = 12/412 (2%)
Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
A + E + + D +A E K+ID+D ++SV+ DS + ++GT + V INPE GD
Sbjct: 2 AKKEETISMIDTLAEFKELKNIDKDTMISVLEDSFRNVIAKMFGTDENYDVIINPEKGDF 61
Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
++R VV +E+E+ Q++L AR D ++G V+D + DFGR A+ + +Q +
Sbjct: 62 EIWRNRTVVADDELEDENLQLTLTEARKIDADCEVGEEVTDEVHFADFGRRAILNLRQTL 121
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLR 177
K+ E ++D Y ++KDK+G II+ V +V +++ D ++ ++ + E I + R
Sbjct: 122 ASKILELQKDSLYAKYKDKIGHIIAAEVYQVWKKEILLLDDDGNELLLPKSEQIPTDFYR 181
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
G+ V++ + V P++LLSRT F+ +LF +EVPEI +G++ +KA++R PG RA
Sbjct: 182 KGETVRAIVQRVDNYNNNPKILLSRTDKVFLQRLFELEVPEINDGLITIKAIARIPGERA 241
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV S D IDPVGACVGM+GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++
Sbjct: 242 KVAVESYDDRIDPVGACVGMKGSRIHGIVRELRNENIDVINYTSNLSLFIQRALSPAKIS 301
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
+ ++E+ + EV + E++SLAIG+ G N++LA LT +TID+ + E + +E
Sbjct: 302 SIRVNEEEKKAEVYLRPEEVSLAIGKGGLNIKLACMLTEYTIDVFRDIEGADEEDIYLDE 361
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409
+ +D + L G + + + +EI +E+T ++
Sbjct: 362 FSD------EIDSWVIDALKNIGCYTAKSVLAMDRNEIIERADLEEQTVDDL 407
>gi|297562526|ref|YP_003681500.1| NusA antitermination factor [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296846974|gb|ADH68994.1| NusA antitermination factor [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 337
Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats.
Identities = 133/348 (38%), Positives = 198/348 (56%), Gaps = 26/348 (7%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ + ++ EK I ++V + D++ A G RVE+N TG ++++ V
Sbjct: 1 MSVLRSLEREKDISVELVAKAIEDALLIAYHREEGPEKRARVELNRSTGHVTVW----VA 56
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVV-SDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
E E+ G V P FGR+A +AKQVI+Q++R+AE +
Sbjct: 57 ETDED-------------------GESVGEFDGTPTGFGRIATSTAKQVILQRLRDAEDE 97
Query: 129 RQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
EF + +I+SG +++ + NV+VDLG + V+ E + E G+R+++Y+
Sbjct: 98 LTLGEFAGREHDIVSGIIQQGKDPRNVLVDLGKIEAVLPPQEQVPTETYTHGERLRAYVV 157
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
VR+ RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+
Sbjct: 158 QVRKGHRGPSVTLSRTHPNLVRKLFELEVPEIADGTVEIAAIAREAGHRTKMAVHSNRGG 217
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVG 306
++ GAC+G GSRV+ V+ EL EKIDIV +S D A FV NAL PA V V + D
Sbjct: 218 VNAKGACIGPLGSRVRNVMAELHGEKIDIVDYSEDPAVFVANALSPARVNSVEILDMASR 277
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354
VIVP Q SLAIG+ GQN RLA++LTGW IDI ++ E + +++
Sbjct: 278 VARVIVPDYQQSLAIGKEGQNARLAARLTGWRIDIRSDAEPAGEPERE 325
>gi|160913530|ref|ZP_02076221.1| hypothetical protein EUBDOL_00006 [Eubacterium dolichum DSM 3991]
gi|158434082|gb|EDP12371.1| hypothetical protein EUBDOL_00006 [Eubacterium dolichum DSM 3991]
Length = 548
Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats.
Identities = 145/435 (33%), Positives = 248/435 (57%), Gaps = 3/435 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66
+ + A+ ++ + +++V+ + +++ KA R + +RV ++ E G+I +F+
Sbjct: 5 DFMTAMQAIESDRQLSKEIVVDALQEALSKAFRKHIEIPDALVRVAVDDENGEIKVFQQR 64
Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
VVE VE+ +ISL A+ + ++++G VV + + DFGR AV AK V+ QK+REAE
Sbjct: 65 AVVETVEDDELEISLNDAKRINEALELGDVVEEEVNIADFGRAAVILAKNVMKQKIREAE 124
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
+ Y E+ DKV E+I GTV+ VE +V++G + ++ +++ I E R G ++ I
Sbjct: 125 KLAVYEEYCDKVEEMIFGTVESVEEKFCVVNIGKTLAIMPKNQQIPNETYREGSMIRVVI 184
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
+V +E +G QVL+SR + +LF EVPEIY GI+++KA++R+ G R K+AV+S +
Sbjct: 185 SEVNKETKGAQVLVSRADATLVKRLFEKEVPEIYQGIIEIKAIAREAGERTKMAVYSHNE 244
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
+IDP+GAC+G RG+RVQ ++ EL+ EKIDI WS D + + NAL PA V V+ +E
Sbjct: 245 NIDPIGACIGPRGTRVQVIIDELKGEKIDIFEWSDDVSELIKNALSPAEVLAVIPNEARK 304
Query: 307 R-IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
+ V+VP QLSLAIG+RG+N RLA +LTG IDI +E + + + ++ +
Sbjct: 305 DGLLVVVPDNQLSLAIGKRGKNARLAVKLTGHKIDIKSESDINEMGIDWKDAAMRYRAEY 364
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEI-ASIEGFDEETAVEIQGRAREYLEGIDITL 424
+ + E F ++E + + + + + E E++ A ++ +
Sbjct: 365 LAKQQAEKEAAQQERFEQMKEEEALTLDDAGVAFDESVYEEETELEEEAVSETSKVEAPI 424
Query: 425 QKKIRELGVSEELCS 439
++ E +L
Sbjct: 425 VEEAMEEKQESDLEE 439
>gi|305665253|ref|YP_003861540.1| transcription elongation factor NusA [Maribacter sp. HTCC2170]
gi|88710006|gb|EAR02238.1| transcription elongation factor NusA [Maribacter sp. HTCC2170]
Length = 410
Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats.
Identities = 133/419 (31%), Positives = 230/419 (54%), Gaps = 15/419 (3%)
Query: 7 LELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
+E + + ++ + +K IDR +++++ D + A + +G+ + + INP+ GD+ ++
Sbjct: 1 MENIALIESFSEFKDDKFIDRVTLMAILEDVFRNALKKKFGSDENFDIIINPDKGDLEIW 60
Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
R VVE+ VE +ISL A+ +P ++G VS+ + +D GR A+ + +Q +I K
Sbjct: 61 RNRIVVEDGEVEEPNEEISLSEAQKIEPDFEVGEDVSEEVKLIDLGRRAILALRQNLISK 120
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGD 180
+ E + Y +FKD GEI + V + + VI+ D ++ ++ +D I + R GD
Sbjct: 121 IHEHDNTTIYKQFKDLEGEIYTAEVHHIRHKAVILLDDEGNEIILPKDRQIPSDFFRKGD 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
V+ I V + P +++SR+ P+F+ +LF E+PE+++G++ +K R PG +AK+A
Sbjct: 181 NVRGIIESVELKGNKPSIIMSRSSPRFLEQLFFQEIPEVFDGLITIKKAVRIPGEKAKVA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S D IDPVGACVGM+GSR+ +V EL +E ID++ W+ + V AL PA V+ V
Sbjct: 241 VDSYDDRIDPVGACVGMKGSRIHGIVRELGNENIDVINWTNNPQLLVTRALSPARVSSVK 300
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
L+++ +V + E++S AIGR G N+RLA QLTG+ ID+ E + +F++
Sbjct: 301 LNDEKMTAQVYLRPEEVSKAIGRGGHNIRLAGQLTGYEIDVFREGVEEDVELTEFSD--- 357
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+D I G + + ++ +EET E+ +E LE
Sbjct: 358 ------EIDAWIIEEFKKIGMDTARSVLEQDVDDLVKRTDLEEETISEVVRILKEELED 410
>gi|284030871|ref|YP_003380802.1| NusA antitermination factor [Kribbella flavida DSM 17836]
gi|283810164|gb|ADB32003.1| NusA antitermination factor [Kribbella flavida DSM 17836]
Length = 330
Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats.
Identities = 131/346 (37%), Positives = 201/346 (58%), Gaps = 24/346 (6%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ + ++ EK I +VV+ + ++ A G R E++ +TG +++F
Sbjct: 5 MAVLRSLEREKDIAFEVVVEAIEQALLVAYHRTEGAQQHARAELDRKTGHVTVF------ 58
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
AR+ P + V P DFGR+A +AKQVI+Q++R+AE +
Sbjct: 59 --------------AREMGPDGTL--VREYDDTPADFGRIAATTAKQVILQRLRDAEDEV 102
Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
+Y EF K G+I+SG V++ + +V+VDLG + V+ E + E G R++ Y+
Sbjct: 103 RYGEFSGKEGDIVSGVVQQGRDPRSVMVDLGKIEAVLPGPEQVPGEKYEHGSRLRVYVVG 162
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
VR+ +GPQ+ +SRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV + + S+
Sbjct: 163 VRKGFKGPQITVSRTHPNLVKKLFALEVPEIADGTVEITAIAREAGHRTKIAVRTLNPSV 222
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307
+ GAC+G G RV+ ++ EL EKIDI+ S D ATFV NAL PA V+ V +D
Sbjct: 223 NGKGACIGPMGQRVRNIMHELHGEKIDIIDHSDDPATFVGNALSPAQVSSVEVVDAAARA 282
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353
V+VP QLSLAIG+ GQN RLA++LTGW IDI + + + +K
Sbjct: 283 ARVVVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTDVTRGDEK 328
>gi|302554522|ref|ZP_07306864.1| transcription termination factor NusA [Streptomyces
viridochromogenes DSM 40736]
gi|302472140|gb|EFL35233.1| transcription termination factor NusA [Streptomyces
viridochromogenes DSM 40736]
Length = 340
Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats.
Identities = 132/352 (37%), Positives = 199/352 (56%), Gaps = 21/352 (5%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ + EK I D+++ + ++ A G+ RVE+N ETG ++++
Sbjct: 5 MSALRGLVREKEISFDLLVEAIESALLIAYHRTEGSRRHARVELNRETGHVTVWAK---- 60
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
E+ + AR+ D P FGR+A +AKQVI+Q++R+AE D
Sbjct: 61 ---EDPDDLEEGQEAREFDD------------TPTGFGRIAATTAKQVILQRLRDAEDDA 105
Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
E+ + G+I++G V++ + NV+VD+G + ++ E + E G R++SY+
Sbjct: 106 TLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGETYGHGMRLRSYVVR 165
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S +
Sbjct: 166 VAKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEISAIAREAGHRTKIAVRSTRSGL 225
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307
+ GAC+G G RV+ V+ EL EKIDIV WS D A V NAL PA V+KV + D
Sbjct: 226 NAKGACIGPVGGRVRNVMGELNGEKIDIVDWSEDPAEMVANALSPARVSKVEIVDMATRS 285
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
V VP QLSLAIG+ GQN RLA++LTGW IDI + E + + + + +
Sbjct: 286 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEPAGEQSGERSGQR 337
>gi|258652414|ref|YP_003201570.1| transcription elongation factor NusA [Nakamurella multipartita DSM
44233]
gi|258555639|gb|ACV78581.1| NusA antitermination factor [Nakamurella multipartita DSM 44233]
Length = 336
Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats.
Identities = 129/348 (37%), Positives = 196/348 (56%), Gaps = 31/348 (8%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ AV EK ID + ++ + ++ A R G RV+I+ +TG I ++
Sbjct: 5 IAALRAVEKEKGIDFNSLIDTLETALLTAYRHTQGHAGHARVQIDRKTGGIRVW------ 58
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
A++ D S +I V P DFGR+A +A+QVI+Q++R+ + +R
Sbjct: 59 --------------AQETDDSGEI--VREWDDTPEDFGRIAATTARQVILQRLRDVDNER 102
Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDR 181
+ +F + ++I+GT+ N V+V LG +G+I E + E+ G R
Sbjct: 103 TFGDFAGREHDLITGTISADAKVNARGVVVVSLGEGKNAVEGIIPAAEQVPGESYPHGQR 162
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++ Y+ V R RGPQ+ LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV
Sbjct: 163 LRCYVVSVARGLRGPQITLSRTHPNLVRKLFALEVPEIADGSVEITAVAREAGHRSKIAV 222
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV- 300
+ + ++ GAC+G G+RV+AV++EL EKIDI+ + D ATFV NAL PA
Sbjct: 223 RPAVAGVNAKGACIGPMGARVRAVMSELNGEKIDIIDYDEDPATFVGNALSPARALSTTV 282
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
+D V+VP QLSLAIG+ GQN RLA++LTGW IDI ++
Sbjct: 283 IDPVAKAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDAAPD 330
>gi|254382096|ref|ZP_04997458.1| transcription elongation factor NusA [Streptomyces sp. Mg1]
gi|194341003|gb|EDX21969.1| transcription elongation factor NusA [Streptomyces sp. Mg1]
Length = 336
Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats.
Identities = 129/342 (37%), Positives = 196/342 (57%), Gaps = 21/342 (6%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ + EK I D+++ + ++ A G+ RV ++ G + ++
Sbjct: 5 MSALRGLVREKEISFDLLVEAIESALLIAYHRTEGSFRRARVVLDRTNGHVVVWAT---- 60
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
E+ L+ ++ P DFGR+A +AKQVI+Q++R+AE D
Sbjct: 61 ---EDPR---DLEEGQEPK---------EFDDTPSDFGRIAATTAKQVILQRLRDAEDDL 105
Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
+ EF + G++I+G V++ + NV+VD+G + ++ E + E+ G R+K+Y+
Sbjct: 106 TFGEFAGREGDVITGVVQQGKDPKNVLVDIGKLEAILPVQEQVPGEDYTHGLRLKTYVVR 165
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ + +
Sbjct: 166 VAKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEICAIAREAGHRTKIAVRSTRAGL 225
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307
+P GAC+G G+RV+ V+ EL EKIDIV WS D A V NAL PA V+KV +D D
Sbjct: 226 NPKGACIGPMGARVRNVMAELHGEKIDIVDWSDDPAEMVANALSPARVSKVEVVDWDTRS 285
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
V VP QLSLAIG+ GQN RLA++LTGW IDI + E +
Sbjct: 286 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEPAE 327
>gi|311898673|dbj|BAJ31081.1| putative transcription elongation protein NusA [Kitasatospora setae
KM-6054]
Length = 333
Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats.
Identities = 130/339 (38%), Positives = 196/339 (57%), Gaps = 21/339 (6%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ + EK + D+++ + ++ A G+ RVE+N +TG ++++
Sbjct: 5 MSALRGLVTEKGVPFDLLVESIESALLIAYHRTEGSRRRARVELNRKTGHVTVWA----- 59
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
L+ A + D ++ P FGR+A +AKQVI+Q++R+A D+
Sbjct: 60 -----------LEDASELDEGVEPKEF---DDTPSGFGRIAASTAKQVILQRLRDAADDQ 105
Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
+ E+ K G+I++G V++ + +V+VD+G + ++ E + E+ R G R+K Y+
Sbjct: 106 TFGEYAGKEGDIVTGVVQQGNDPKSVLVDIGKLEAILPPQEQVPGEDYRHGTRLKCYVVG 165
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
VRR RGP V LSRTHP + +LF +EVPEI +G V++ A++R+ G R K+AV+S +
Sbjct: 166 VRRGVRGPSVTLSRTHPSLVKRLFALEVPEIADGSVEIAAIAREAGHRTKIAVWSRRQGL 225
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307
+ GAC+G G RV+ V+ EL EKIDIV WS D A V AL PA VTKV + D
Sbjct: 226 NAKGACIGPNGMRVRGVMAELHGEKIDIVDWSEDPAEMVAAALSPARVTKVEIVDLAQRS 285
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346
VIVP QLSLAIG+ GQN RLA++LTGW IDI + E
Sbjct: 286 ARVIVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTE 324
>gi|212550409|ref|YP_002308726.1| transcription elongation factor NusA [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
gi|212548647|dbj|BAG83315.1| transcription elongation factor NusA [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
Length = 417
Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats.
Identities = 131/415 (31%), Positives = 226/415 (54%), Gaps = 13/415 (3%)
Query: 12 IADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ +A A K+IDR ++SV+ ++ + A ++G+ + + +NP+ GD ++R EV
Sbjct: 10 MIEAFANFKSNKNIDRTTLISVLEETFRNAINKMFGSDKNYNIIVNPDKGDFEIWRNREV 69
Query: 69 VEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
V + +EN QI+L AR DP + G +SD + FGR V + +Q++ K+ E +
Sbjct: 70 VPDDKLENPNLQITLSEARKIDPDYESGEEISDAVNFSSFGRRTVLNLRQILTSKILELQ 129
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDRVKSY 185
+ Y ++KDK+G I++G V ++ +++ D ++ ++ + E I + R + ++
Sbjct: 130 NNSLYNKYKDKIGHIVTGEVYQIWKKEILLLDDEGNELILPKSEQIPNDFFRKNESCRAV 189
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ V P+++LSRT FM +LF +EVPEI +G++ +K ++R PG RAK+AV S +
Sbjct: 190 VLRVDNNYSNPKIILSRTSNSFMQQLFELEVPEIQDGLITIKHIARIPGERAKIAVESYN 249
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
IDP+G CVGM+G R+ +V ELR+E IDI+ ++ + + F+ AL PA ++ + + E
Sbjct: 250 ERIDPIGTCVGMKGMRIHGIVRELRNENIDIINYTSNISLFIQRALSPAKISSIKIHEKE 309
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
+ EV + E++SLAIG+ G N++LAS LTG+TID+ E E+
Sbjct: 310 KKAEVFLRPEEVSLAIGKSGLNIKLASILTGYTIDVFREGENDDEDIY-------LDEFK 362
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
++E I L G + + EI +E T EI + E
Sbjct: 363 DEIEEWIIEALKNIGCYTAKSVLTKNKEEIVRQTDLEENTVDEILKILKTEFEEE 417
>gi|260654723|ref|ZP_05860211.1| transcription termination factor NusA [Jonquetella anthropi E3_33
E1]
gi|260630438|gb|EEX48632.1| transcription termination factor NusA [Jonquetella anthropi E3_33
E1]
Length = 358
Score = 289 bits (741), Expect = 5e-76, Method: Composition-based stats.
Identities = 131/349 (37%), Positives = 221/349 (63%), Gaps = 5/349 (1%)
Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66
L+ ++ ++A E ++ DV+++ + ++ A R ++ V +N ETG++ ++ +
Sbjct: 5 LDCIRALKSLAEESNLSEDVIVASLEAALGAAYRKYREGTTEPEVHLNRETGEVEIYDVR 64
Query: 67 EVVEEVENYTCQISLKVARDR-DPSIDIGGVVSDPL--PPMDFGRVAVQSAKQVIIQKVR 123
E T +I+ A + G +V P+ P FGR+A Q+A+QVIIQ+++
Sbjct: 65 RTTENPVAGTSEITQAEAAQMGYSDVQPGDLVRVPVYVHPEKFGRIAAQTARQVIIQRLK 124
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182
+AER+ + EF +K+G+++ G V R E V++ +G S+ +++R+E I E G R+
Sbjct: 125 DAEREVVFNEFSEKIGDLVLGEVIRSENDQVLIHIGERSEALLQREERIPNEKYDIGMRL 184
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
+ ++ DVR+ RGP+++LSRTHP + +L +E+PEI +G V++K + R+ G+RAK+AV
Sbjct: 185 RFFLLDVRQTTRGPRIVLSRTHPGLLRRLMELEIPEIADGTVEIKGIVREAGARAKVAVA 244
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
++D S+DP+GACVG G+R++++ +EL +EKIDIV+W D T+V N+L PA K+ L
Sbjct: 245 TTDPSVDPLGACVGASGARIRSISSELCEEKIDIVLWDEDPLTYVKNSLSPATPVKIELV 304
Query: 303 ED-VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350
D + V V +QLSLAIG+ GQNVRLA++LTGW +DI + E+
Sbjct: 305 PDAERSVRVFVKPDQLSLAIGKTGQNVRLAARLTGWKLDIQSSEKLDEP 353
>gi|256824991|ref|YP_003148951.1| transcription termination factor NusA [Kytococcus sedentarius DSM
20547]
gi|256688384|gb|ACV06186.1| transcription termination factor NusA [Kytococcus sedentarius DSM
20547]
Length = 357
Score = 289 bits (741), Expect = 5e-76, Method: Composition-based stats.
Identities = 116/342 (33%), Positives = 193/342 (56%), Gaps = 18/342 (5%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ + V E+ I DV++ + ++ +A + G + RVE++ +G + ++
Sbjct: 5 MAVLREVEREREIPLDVLVPALETALLQAYQHEAGGRRNARVELDRRSGQVVVWAR---- 60
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
E+ L+ + + P DFGR+ + +QVI Q++R+ E +
Sbjct: 61 ---EDAPV---LEDGTRGEAGPEFDDT------PEDFGRIGAFTVRQVIRQRLRDLEDEA 108
Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
+FK K G+I++G +++ + + VDLG +G++ E + E+ + GDR++ Y+
Sbjct: 109 VLGDFKGKEGDIVAGVIQQSNDPHAIHVDLGTVEGLLGTSEQVPLEDYKHGDRIRCYVIH 168
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
+R +GP + LSRTHP + KLF +EVPE+ +G V++++++R+ G R+K+AV ++ +
Sbjct: 169 AKRGMKGPLIGLSRTHPNLVRKLFALEVPEVADGTVRIESIAREAGHRSKMAVRATQPGV 228
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307
+ G+C+G G RV+AV+ EL+ EKIDIV + D FV AL PA VT V +DE
Sbjct: 229 NAKGSCIGPMGGRVRAVMNELQGEKIDIVDYDDDPRKFVAAALSPAKVTSVTVVDEKTRS 288
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
V VP QLSLAIG+ GQN RLA++LTGW IDI +
Sbjct: 289 ARVTVPAHQLSLAIGKEGQNARLAARLTGWRIDIQPDHTADE 330
>gi|225011158|ref|ZP_03701620.1| NusA antitermination factor [Flavobacteria bacterium MS024-3C]
gi|225004720|gb|EEG42680.1| NusA antitermination factor [Flavobacteria bacterium MS024-3C]
Length = 410
Score = 289 bits (741), Expect = 5e-76, Method: Composition-based stats.
Identities = 131/418 (31%), Positives = 233/418 (55%), Gaps = 15/418 (3%)
Query: 7 LELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
+E + + ++ + +K IDR +++++ + + A + +G+ + + INP+ GD+ ++
Sbjct: 1 MENIALIESFSEFKDDKFIDRVTLMAILEEVFRSALKKKFGSDDNFDIIINPDKGDLEIW 60
Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
R VVE+ V + +IS+ AR +P ++G VS+ + +D GR A+ + +Q +I K
Sbjct: 61 RNRVVVEDIDVMDPNEEISITEARKIEPDFEVGEDVSEEVKLIDLGRRAILALRQNLIAK 120
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGD 180
+ E + Y +FKD GEI + V + + +I+ D ++ ++ +D+ I + R GD
Sbjct: 121 IHEHDNTTIYKQFKDLEGEIYTAEVHHIRHQAIILLDDEGNEIILPKDKQIPADFFRKGD 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
V+ I V + P +++SRT P F+ +LF E+PE+++G++ +K R PG +AK+A
Sbjct: 181 NVRGIIESVELKGNKPSIIMSRTSPLFLEQLFFQEIPEVFDGLITIKKAVRIPGEKAKVA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S D IDPVGACVGM+GSR+ +V EL +E ID++ W+ + V AL PA V+ V
Sbjct: 241 VDSYDDRIDPVGACVGMKGSRIHGIVKELGNENIDVINWTNNPTLLVTRALSPARVSSVK 300
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
LD++ +V + E++S AIGR G N+RLA QLTG+ ID+ E + +F++ +
Sbjct: 301 LDDEKMTAQVYLKPEEVSKAIGRGGHNIRLAGQLTGYEIDVFREGVEEDVELTEFSDEIE 360
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
++ L G + + ++A +EET +++ +E LE
Sbjct: 361 AWI---------IAELSKIGLDTARAVLEQDVEDLAKRTDLEEETILDVVRILKEELE 409
>gi|311744143|ref|ZP_07717949.1| transcription termination factor NusA [Aeromicrobium marinum DSM
15272]
gi|311313273|gb|EFQ83184.1| transcription termination factor NusA [Aeromicrobium marinum DSM
15272]
Length = 332
Score = 289 bits (741), Expect = 6e-76, Method: Composition-based stats.
Identities = 126/340 (37%), Positives = 193/340 (56%), Gaps = 18/340 (5%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR--LLE 67
+ A+ EK + DVV+ + ++ A RVE++ + G + ++ L
Sbjct: 5 MNALRALEREKDLSFDVVVEAIEQALLSAYHKTPDAHGHARVELDRKNGHVVVWAAERLP 64
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
V E + P DFGR A A+QVI+Q++REAE
Sbjct: 65 VEPTEEQPHPPAAWSE--------------EFDDTPEDFGRFAAAIARQVIMQRLREAED 110
Query: 128 DRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
+++Y EF +VG+I+SG +++ G+V++DLG + ++ E ++ E G+R+K+Y+
Sbjct: 111 EQKYGEFSGRVGDIVSGVIQQGRSPGDVMIDLGRVEAILPSAERVAEEKYAHGERIKAYV 170
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
Y+V + RGP+V +SRTHP + LF +EVPEI + V++ AV+R+ G R K+AV +
Sbjct: 171 YEVEKGLRGPRVKVSRTHPNLVRLLFALEVPEIADHSVEIVAVAREAGHRTKIAVRARVP 230
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDV 305
++ GAC+G G+RV+ V+ EL EKIDIV S D A F+ AL P+ VT V +DE
Sbjct: 231 GVNAKGACIGPLGARVRNVMHELHGEKIDIVDHSDDPAEFIGYALSPSRVTSVTVVDEAT 290
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345
V+VP QLSLAIG+ GQN RLA++LTGW IDI ++
Sbjct: 291 RSARVVVPDFQLSLAIGKEGQNARLAAKLTGWRIDIRSDT 330
>gi|15902522|ref|NP_358072.1| transcription elongation factor NusA [Streptococcus pneumoniae R6]
gi|15458048|gb|AAK99282.1| Transcription termination [Streptococcus pneumoniae R6]
Length = 378
Score = 289 bits (741), Expect = 6e-76, Method: Composition-based stats.
Identities = 126/360 (35%), Positives = 209/360 (58%), Gaps = 15/360 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E
Sbjct: 4 EMLEAFRILEEDKRIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+E + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R
Sbjct: 64 VVDEAFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y
Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + +
Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P
Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKNDRMVPIEENIDVIEWVADPAEFIYNAIAP 303
Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 304 AEVDQVIFDESDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMED 363
>gi|309775437|ref|ZP_07670440.1| N utilization substance protein A [Erysipelotrichaceae bacterium
3_1_53]
gi|308916826|gb|EFP62563.1| N utilization substance protein A [Erysipelotrichaceae bacterium
3_1_53]
Length = 565
Score = 289 bits (740), Expect = 6e-76, Method: Composition-based stats.
Identities = 145/426 (34%), Positives = 241/426 (56%), Gaps = 5/426 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66
+ + A+ ++ + ++VV+ + +++ KA R + +RV++N ++GDI +++
Sbjct: 5 DFMAAMQAIETDRKLSKEVVVDALQEALAKAFRKHIEIPDALVRVDVNEKSGDIKVYQQR 64
Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
+VE VE+ +ISL+ A+ + +++GGVV + + D GR AV AK V+ QK+REAE
Sbjct: 65 LIVENVEDDELEISLEDAKRVNQELELGGVVEEEVSIADLGRAAVILAKNVMKQKIREAE 124
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
+ Y E+ DKV E++ GT++ VE +V++G + ++ +++ I E R G+ ++ I
Sbjct: 125 KLVVYEEYCDKVEEMVMGTIESVEEKFCVVNIGKTLALMPKNQQIPNERYREGEMIRVVI 184
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
+V +E +G QVL+SR + +LF EVPEI+ GI+++KA++R+ G R K+AV+S +
Sbjct: 185 TEVNKETKGAQVLVSRGDATLVKRLFEKEVPEIFQGIIEIKAIAREAGERTKMAVYSHNE 244
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
+IDP+GAC+G RG RVQ ++ EL EKIDI WS D + NAL PA V V+ E+
Sbjct: 245 NIDPIGACIGPRGQRVQVIIDELGGEKIDIFEWSEDVTELIKNALSPAEVLAVIPSEERK 304
Query: 307 -RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
+ V+VP QLSLAIG+RG+N RLA +LTG IDI E + + + +
Sbjct: 305 GGLLVVVPDNQLSLAIGKRGKNARLAVKLTGNKIDIKAETDVNAAGINWKEIAMKQREEF 364
Query: 366 INVDEIIAHLLVAEGF---ADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
+ + E F A +E + + ++ E +E E Q E I
Sbjct: 365 LARQQEAKEAAQMERFEENAQPQEAVSLDDAGVSFQEVVTDEEVSEPQTAVDAVAEEIPA 424
Query: 423 TLQKKI 428
++I
Sbjct: 425 EAVEEI 430
>gi|189465081|ref|ZP_03013866.1| hypothetical protein BACINT_01425 [Bacteroides intestinalis DSM
17393]
gi|189437355|gb|EDV06340.1| hypothetical protein BACINT_01425 [Bacteroides intestinalis DSM
17393]
Length = 440
Score = 289 bits (740), Expect = 6e-76, Method: Composition-based stats.
Identities = 136/412 (33%), Positives = 240/412 (58%), Gaps = 11/412 (2%)
Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
A ++E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD
Sbjct: 2 AKKVETVSLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61
Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
++R EVV E++EN QI+L A+ D S ++G V+D + +FGR A+ + +Q +
Sbjct: 62 EIWRNREVVADEDLENPNLQIALSEAQKIDASYEVGEEVTDEVIFANFGRRAILNLRQTL 121
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177
K+ E E+D Y ++ DKVG II+ V + + +++D ++ ++ + E I + R
Sbjct: 122 ASKILELEKDSIYNKYIDKVGNIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA
Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++
Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKIS 301
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
+ L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E + ++ + + +
Sbjct: 302 SIRLNEEERKAEVFLRPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDQAVEDEDIYLD 361
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409
+ +D + + A G + + + +EET E+
Sbjct: 362 EFRD-----EIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEV 408
>gi|329954143|ref|ZP_08295238.1| transcription termination factor NusA [Bacteroides clarus YIT
12056]
gi|328528120|gb|EGF55100.1| transcription termination factor NusA [Bacteroides clarus YIT
12056]
Length = 421
Score = 289 bits (740), Expect = 7e-76, Method: Composition-based stats.
Identities = 139/424 (32%), Positives = 242/424 (57%), Gaps = 11/424 (2%)
Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD
Sbjct: 2 AKKEETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61
Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
++R EVV E++EN QISL AR D S ++G V+D + FGR A+ + +Q +
Sbjct: 62 EIWRNREVVADEDLENPNLQISLSEARKIDASYEVGEEVTDEVNFAKFGRRAILNLRQTL 121
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177
K+ E E+D Y ++ DKVG II+ V + + +++D ++ ++ + E I + R
Sbjct: 122 ASKILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA
Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++
Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKIS 301
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
+ L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E ++++ + + +
Sbjct: 302 SIRLNEEEHKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDEAVEDEDIYLD 361
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
+ +D + + A G + + + +EET E+ +
Sbjct: 362 EFRD-----EIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEVLRILKSEF 416
Query: 418 EGID 421
E +
Sbjct: 417 EEEN 420
>gi|332830404|gb|EGK03032.1| transcription termination factor NusA [Dysgonomonas gadei ATCC
BAA-286]
Length = 420
Score = 289 bits (740), Expect = 7e-76, Method: Composition-based stats.
Identities = 142/423 (33%), Positives = 242/423 (57%), Gaps = 12/423 (2%)
Query: 6 RLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62
+ E++ + D + E K+IDR ++SV+ DS + L+G+ + V INP+ GD+ +
Sbjct: 3 KKEVISMIDTFSEFKELKNIDRMTMISVLEDSFRNVIAKLFGSNDNYDVIINPDKGDLEI 62
Query: 63 FRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
+R +VE+ +E+ QISL AR D ++G V+D + DFGR A+ + +Q +
Sbjct: 63 WRNRTIVEDSELEDENTQISLTEARKIDEDFEVGEDVTDEVFFEDFGRRAILNLRQTLTS 122
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPG 179
K+ E +++ Y +K+K+GEI+SG V ++ +++ D + ++ + E I + R G
Sbjct: 123 KILELQKEGLYNRYKEKIGEIVSGEVYQIWKKEILLLDDEKEELLLPKTEQIPSDFFRKG 182
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
+ V++ + V + P+++LSRT P F+ +L +EVPEI +G++ +K ++R PG RAK+
Sbjct: 183 EHVRAVVERVENKNNNPKIILSRTSPVFLERLLEIEVPEINDGLITIKNIARIPGERAKV 242
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV S D IDPVGACVGM+GSR+ +V ELR+E IDI+ ++P+ + ++ AL PA +T V
Sbjct: 243 AVESYDDRIDPVGACVGMKGSRIHGIVRELRNENIDIINYTPNMSLYIQRALSPAKITSV 302
Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
L+E+ R EV++ E++SLAIG+ G N++LAS LTG+TID+ + +D +E
Sbjct: 303 KLNEEEKRAEVLLRPEEVSLAIGKGGFNIKLASMLTGYTIDVYRDIDDFDEEDIYLDEFR 362
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+D + L G + + ++ +E+T EI R +
Sbjct: 363 D------EIDGWVIDQLKKIGCVTAKNVLAADRDKLIQEADLEEDTVDEILDILRAEFDD 416
Query: 420 IDI 422
Sbjct: 417 ESK 419
>gi|167764123|ref|ZP_02436250.1| hypothetical protein BACSTE_02506 [Bacteroides stercoris ATCC
43183]
gi|167698239|gb|EDS14818.1| hypothetical protein BACSTE_02506 [Bacteroides stercoris ATCC
43183]
Length = 421
Score = 289 bits (740), Expect = 7e-76, Method: Composition-based stats.
Identities = 138/412 (33%), Positives = 239/412 (58%), Gaps = 11/412 (2%)
Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD
Sbjct: 2 AKKEETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61
Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
++R EVV E++EN QISL AR D S ++G V+D + FGR A+ + +Q +
Sbjct: 62 EIWRNREVVADEDLENPNLQISLSEARKIDASYEVGEEVTDEVNFAKFGRRAILNLRQTL 121
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177
K+ E E+D Y ++ DKVG II+ V + + +++D ++ ++ + E I + R
Sbjct: 122 ASKILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA
Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++
Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKIS 301
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
+ L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E ++++ + + +
Sbjct: 302 SIRLNEEEHKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDEAVEDEDIYLD 361
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409
+ +D + + A G + + + +EET E+
Sbjct: 362 EFRD-----EIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEV 408
>gi|315302978|ref|ZP_07873697.1| transcription termination factor NusA [Listeria ivanovii FSL
F6-596]
gi|313628646|gb|EFR97060.1| transcription termination factor NusA [Listeria ivanovii FSL
F6-596]
Length = 312
Score = 289 bits (740), Expect = 7e-76, Method: Composition-based stats.
Identities = 134/311 (43%), Positives = 198/311 (63%)
Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
E VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VRE
Sbjct: 1 RKEAVEQVFDSRLEISMEEAHKINPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVRE 60
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
AER Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K
Sbjct: 61 AERGIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKV 120
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
Y+ V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V+++
Sbjct: 121 YLTKVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTA 180
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
+ +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E
Sbjct: 181 NEEVDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEA 240
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + N ++
Sbjct: 241 DQATTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETVATELGIYPRNNEDVTPVE 300
Query: 365 AINVDEIIAHL 375
+
Sbjct: 301 EAESETFTEDE 311
>gi|312139328|ref|YP_004006664.1| transcriptional termination/antitermination factor nusa
[Rhodococcus equi 103S]
gi|325676662|ref|ZP_08156337.1| transcription elongation factor NusA [Rhodococcus equi ATCC 33707]
gi|311888667|emb|CBH47979.1| transcriptional termination/antitermination factor NusA
[Rhodococcus equi 103S]
gi|325552517|gb|EGD22204.1| transcription elongation factor NusA [Rhodococcus equi ATCC 33707]
Length = 343
Score = 289 bits (739), Expect = 9e-76, Method: Composition-based stats.
Identities = 127/347 (36%), Positives = 195/347 (56%), Gaps = 30/347 (8%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ A+ +K I +++ + ++ A R G R++++ ++G + +
Sbjct: 5 IAALRAIEADKGISAGTIIAAIETALLTAYRHTEGHQPHARIDVDTKSGVVRVMAR---- 60
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
+V++ Q +G D P FGR+A +A+QVI+Q++R+AE +R
Sbjct: 61 -DVDSDGNQ--------------VGEEWDD--TPEGFGRIAATTARQVILQRLRDAEHER 103
Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETISRENLRPGDR 181
+ EF GEI+ G ++R N V+V +G ++G+I E + E GDR
Sbjct: 104 SFGEFATHEGEIVGGVIQRDTRANARGMVVVRIGSEANGAEGLIPPAEQVPGETYEHGDR 163
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K Y+ V R QRGPQ+ LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV
Sbjct: 164 IKCYVVGVSRGQRGPQITLSRTHPNLVRKLFALEVPEIADGSVEIVAVARESGHRSKIAV 223
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV- 300
S ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL P+ V V
Sbjct: 224 HSRVPGLNAKGACIGPMGQRVRNVMSELAGEKIDIIDYDEDPAKFVGNALSPSKVVSVTV 283
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347
+D + V+VP QLSLAIG+ GQN RLA++LTGW IDI ++
Sbjct: 284 VDPEARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDAAP 330
>gi|25010487|ref|NP_734882.1| transcription elongation factor NusA [Streptococcus agalactiae
NEM316]
gi|76788260|ref|YP_329098.1| transcription elongation factor NusA [Streptococcus agalactiae
A909]
gi|161485616|ref|NP_687412.2| transcription elongation factor NusA [Streptococcus agalactiae
2603V/R]
gi|23094840|emb|CAD46058.1| Unknown [Streptococcus agalactiae NEM316]
gi|76563317|gb|ABA45901.1| transcription termination factor NusA [Streptococcus agalactiae
A909]
Length = 383
Score = 289 bits (739), Expect = 9e-76, Method: Composition-based stats.
Identities = 127/378 (33%), Positives = 212/378 (56%), Gaps = 15/378 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + EK I+++ ++ + +S++ A + YG +E N + D +++ + E
Sbjct: 4 EMLEAFRILEEEKHINKEDIIDAVTESLKSAYKRRYGQSESCVIEFNEKKADFTVYTVRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R R
Sbjct: 64 VVDEVFDSRLEISLKDALAISSAYELGDKIRFEESVTEFGRVAAQSAKQTIMEKMRRQMR 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ + E+K GEI++GTV+R + + V+LG+ + + + I E+ + D + Y+Y
Sbjct: 124 EVTFNEYKQHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGESFKSHDMIDVYVY 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S +S+
Sbjct: 184 KVENNPKGVNVFVSRSHPEFIKRIMEREIPEVFDGTVEIMSVSREAGDRTKVAVRSHNSN 243
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG GS ++ V++ E ID++ W D A F+ NA+ P
Sbjct: 244 VDAIGTIVGRGGSNIKKVISNFHPKRVDAKTGLEIPVEENIDVIQWVEDPAEFIYNAIAP 303
Query: 294 AIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V V+ DED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 304 AEVDMVLFDDEDTKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYEKMEA 363
Query: 353 KDFNERTQFFMQAINVDE 370
++ + D+
Sbjct: 364 QELQTEEVAQESEVISDK 381
>gi|257452235|ref|ZP_05617534.1| transcription elongation factor NusA [Fusobacterium sp. 3_1_5R]
gi|317058778|ref|ZP_07923263.1| transcription elongation factor NusA [Fusobacterium sp. 3_1_5R]
gi|313684454|gb|EFS21289.1| transcription elongation factor NusA [Fusobacterium sp. 3_1_5R]
Length = 353
Score = 289 bits (739), Expect = 9e-76, Method: Composition-based stats.
Identities = 129/344 (37%), Positives = 210/344 (61%), Gaps = 3/344 (0%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
M + + L+ D + EK I+++ +L + ++ A + YG ++ V I+ E GD+
Sbjct: 1 MTNKDARAFLEALDELEKEKGIEKESLLQAVEQALLTAYKKNYGDEENVEVVIDRENGDV 60
Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
++ + +VV E++ + +ISL+ A+ +G V + F R A+Q+ KQ++
Sbjct: 61 KVYEVKKVVTEEDLYDAALEISLEEAKKISRRAKLGEEVRIEVDCESFRRNAIQNGKQIV 120
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177
IQKVREAER+ Y FK + GEI++G ++R E NV ++ G + ++ E + +
Sbjct: 121 IQKVREAERENIYDRFKAQEGEILTGIIRRIDERKNVFIEFGGIETILTAGEQCVSDRYK 180
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
G+R+K Y+ +V + + P++++SR H + KLF +E+PEI +G +++KAV+R+ GSRA
Sbjct: 181 VGNRIKVYLVEVEKTNKFPKIVISRRHEGLLRKLFELEIPEISSGAIEIKAVAREAGSRA 240
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV+S +ID VGAC+G + +R++ +V EL EKIDIV+W + FV L PA V
Sbjct: 241 KVAVYSELPNIDIVGACIGQKRARIKNIVDELGGEKIDIVIWKENMEEFVSAVLSPAKVN 300
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
V L ED V+V + QLSLAIG+ GQN RLA++LTG +DI
Sbjct: 301 SVELLEDGETARVLVDESQLSLAIGKSGQNARLAAKLTGMRVDI 344
>gi|295836231|ref|ZP_06823164.1| transcription termination factor NusA [Streptomyces sp. SPB74]
gi|295825916|gb|EFG64550.1| transcription termination factor NusA [Streptomyces sp. SPB74]
Length = 365
Score = 289 bits (739), Expect = 9e-76, Method: Composition-based stats.
Identities = 126/340 (37%), Positives = 192/340 (56%), Gaps = 18/340 (5%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ + EK I D ++ + ++ A + RV ++ E+G ++++ V
Sbjct: 5 MSALRGLVREKEISFDRLVEAIESALLIAYHRTEHSHRRARVHLDRESGHVTVW----VK 60
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
E+ + AR+ D P DFGR+A +AKQVI+Q++R+A+ D
Sbjct: 61 EDEADLADLGEGARAREFDD------------TPSDFGRIAATTAKQVILQRLRDAQDDA 108
Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
E+ + G+I++G V++ + NV+VD+G + ++ E + E G R++SY+
Sbjct: 109 TLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGEEYTHGLRLRSYVVR 168
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S +
Sbjct: 169 VAKGMRGPSVTLSRTHPNLVKKLFSLEVPEIADGSVEIAAIAREAGHRTKIAVRSNRSGL 228
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307
+ GAC+G G RV+ V+ EL EKIDIV WS + A V +AL PA V+ V +D
Sbjct: 229 NAKGACIGPMGGRVRNVMAELNGEKIDIVDWSDNPAELVAHALSPARVSHVEVVDLATRS 288
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347
V VP QLSLAIG+ GQN RLA++LTGW IDI + E
Sbjct: 289 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTET 328
>gi|150024572|ref|YP_001295398.1| transcription elongation factor NusA [Flavobacterium psychrophilum
JIP02/86]
gi|149771113|emb|CAL42580.1| Transcription elongation protein NusA [Flavobacterium psychrophilum
JIP02/86]
Length = 413
Score = 289 bits (739), Expect = 9e-76, Method: Composition-based stats.
Identities = 133/419 (31%), Positives = 239/419 (57%), Gaps = 12/419 (2%)
Query: 7 LELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
+E L + D+ + +KSIDR +++++ D + A + YG+ + + INP+ GD+ ++
Sbjct: 1 MENLALIDSFSEFKDDKSIDRPTLMAILEDVFRNALKKKYGSDDNFDIIINPDKGDMEIW 60
Query: 64 RLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
+ +V +++ +I+L AR +P +IG VS+ + +D GR A+ + +Q +I K
Sbjct: 61 QRRVIVADDDLDLDHLEITLTDARKIEPDFEIGEEVSEEVKLIDLGRRAILALRQNLISK 120
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGD 180
+ E + Y +FKD +G+I +G V V VI VD ++ ++ +++ I + R GD
Sbjct: 121 IHEHDNTNLYKQFKDLIGDIYTGEVHHVRPRVVILVDDEGNEIILPKEKQIPSDFFRKGD 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
V+ I V + PQ+++SRT +F+ KLF E+PE+++G++ VK V R PG +AK+A
Sbjct: 181 NVRGIIESVELKGNKPQIIMSRTSEKFLEKLFEQEIPEVFDGLIMVKNVVRIPGEKAKVA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S D IDPVGACVGM+GSR+ +V EL +E ID++ ++ ++ ++ AL PA V+ +
Sbjct: 241 VDSYDDRIDPVGACVGMKGSRIHGIVRELGNENIDVINYTTNTQLYITRALSPAKVSSIK 300
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
++E+ R EV + E++S AIGR G N++LA QLTG+ +D+I E + + + E +
Sbjct: 301 INEETKRAEVFLKLEEVSKAIGRGGHNIKLAGQLTGYELDVIREGTVAADDDVELTEFSD 360
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
++ + G + + ++++ +EET +E+ +E E
Sbjct: 361 ------EIEAWVIEEFAKIGLDTAKSILSQDVNDLVRRTDLEEETILEVVKILKEEFEE 413
>gi|224536664|ref|ZP_03677203.1| hypothetical protein BACCELL_01540 [Bacteroides cellulosilyticus
DSM 14838]
gi|224521755|gb|EEF90860.1| hypothetical protein BACCELL_01540 [Bacteroides cellulosilyticus
DSM 14838]
Length = 446
Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats.
Identities = 135/412 (32%), Positives = 240/412 (58%), Gaps = 11/412 (2%)
Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
A ++E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD
Sbjct: 2 AKKVETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61
Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
++R EVV E++EN QI+L A+ D S ++G V+D + +FGR A+ + +Q +
Sbjct: 62 EIWRNREVVADEDLENPNLQIALSEAQKIDASYEVGEEVTDEVIFANFGRRAILNLRQTL 121
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177
K+ E E+D Y ++ DKVG II+ V + + +++D ++ ++ + E I + R
Sbjct: 122 ASKILELEKDSIYNKYIDKVGNIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA
Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++
Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKIS 301
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
+ L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E + ++ + + +
Sbjct: 302 SIRLNEEERKAEVFLRPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDQAVEDEDIYLD 361
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409
+ +D + + + G + + + +EET E+
Sbjct: 362 EFRD-----EIDGWVIDAIKSIGIDTAKAVLNAPRELLIEKTDLEEETVDEV 408
>gi|318062643|ref|ZP_07981364.1| transcription elongation factor NusA [Streptomyces sp. SA3_actG]
Length = 367
Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats.
Identities = 125/350 (35%), Positives = 194/350 (55%), Gaps = 18/350 (5%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ + EK I D ++ + ++ A + RV ++ E+G ++++ + E
Sbjct: 1 MSALRGLVREKEISFDRLVEAIESALLIAYHRTEHSHRRARVHLDRESGHVTVW-VKEEA 59
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
++ + + AR R P DFGR+A +AKQVI+Q++R+A+ D
Sbjct: 60 ADLADLG-----EDARPR----------EFDDTPSDFGRIAATTAKQVILQRLRDAQDDA 104
Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
E+ + G+I++G V++ + NV+VD+G + ++ E + E G R++SY+
Sbjct: 105 TLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGEEYTHGLRLRSYVVR 164
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S +
Sbjct: 165 VAKGMRGPSVTLSRTHPNLVKKLFSLEVPEIADGSVEIAAIAREAGHRTKIAVRSNRSGL 224
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307
+ GAC+G G RV+ V+ EL EKIDIV WS + A V +AL PA V+ V +D
Sbjct: 225 NAKGACIGPMGGRVRNVMAELNGEKIDIVDWSDNPADLVAHALSPARVSHVEVVDLATRS 284
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
V VP QLSLAIG+ GQN RLA++LTGW IDI + E +
Sbjct: 285 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTETTDEDGNATEN 334
>gi|293400740|ref|ZP_06644885.1| N utilization substance protein A [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|291305766|gb|EFE47010.1| N utilization substance protein A [Erysipelotrichaceae bacterium
5_2_54FAA]
Length = 559
Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats.
Identities = 137/389 (35%), Positives = 227/389 (58%), Gaps = 2/389 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66
+ + A+ ++ + ++VV+ + +++ KA R + +RV++N +TG+I +++
Sbjct: 5 DFMAAMQAIESDRKLPQEVVVEALQEALAKAFRKHIEIPDALVRVDVNEKTGNIKVYQQR 64
Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
+VE VE+ +ISL+ A+ + +++ GVV + + GR AV AK V+ QK+REAE
Sbjct: 65 TIVETVEDDELEISLEDAKKINQELELDGVVEEEVDITQLGRAAVILAKNVMKQKIREAE 124
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
+ Y E+ DKV E++ GT++ VE IV++G + ++ +++ I E GDR++ I
Sbjct: 125 KLIVYEEYCDKVDEMVVGTIESVEEKFCIVNIGKTLALMPKNQQIPNERYHEGDRIRVVI 184
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
+V +E +G QVL+SR + +LF EVPEI+ G++++KA++R+ G R K+AV+S +
Sbjct: 185 IEVNKETKGAQVLVSRGDATLVKRLFEKEVPEIFQGVIEIKAIAREAGERTKMAVYSHNE 244
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
+IDP+GAC+G RG RVQ ++ EL EKIDI WS D A + NAL PA V V+ E+
Sbjct: 245 NIDPIGACIGPRGQRVQVIINELGGEKIDIFEWSEDVAELIKNALSPAEVLAVIPSEERK 304
Query: 307 -RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
+ V+VP QLSLAIG+RG+N RLA +LTG IDI E + + +
Sbjct: 305 GGLLVVVPDNQLSLAIGKRGKNARLAVKLTGNKIDIKAESDVDAAGIDWKGIAMKQREEF 364
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISE 394
+ L E F + + +++
Sbjct: 365 LAAQAAAKALAQQERFEEAASEEAISLAD 393
>gi|224025208|ref|ZP_03643574.1| hypothetical protein BACCOPRO_01942 [Bacteroides coprophilus DSM
18228]
gi|224018444|gb|EEF76442.1| hypothetical protein BACCOPRO_01942 [Bacteroides coprophilus DSM
18228]
Length = 418
Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats.
Identities = 137/422 (32%), Positives = 237/422 (56%), Gaps = 11/422 (2%)
Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD
Sbjct: 2 AKKEETVSLIDTFSEFKELKNIDRTTLVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61
Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
++R EVV E++ N QISL AR D S +IG V+D + FGR A+ + +Q +
Sbjct: 62 EIWRNREVVADEDLTNPNSQISLSQARQIDASYEIGEEVTDEVIFEKFGRRAILNLRQTL 121
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLR 177
K+ E E+D Y ++ DKVG +IS V ++ +++ D ++ ++ + E I + R
Sbjct: 122 ASKILELEKDSLYNKYIDKVGTVISAEVYQIWKKEILLLDDEGNELLLPKTEQIPGDFYR 181
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
G+ ++ + V P+++LSRT P F+ +LF EVPEI +G++ ++ ++R PG RA
Sbjct: 182 KGETARAVVARVDNPGNNPKIILSRTSPMFLQRLFEQEVPEIADGLITIRRIARIPGERA 241
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++
Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKIS 301
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
+V+ ED + EV + E++SLAIG+ G N++LAS LT +TID+ E ++S + + +
Sbjct: 302 SIVMHEDEKKAEVYLKPEEVSLAIGKGGMNIKLASMLTEYTIDVYRELDESATDEDIYLD 361
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
+ +DE + + + G + + + +E T ++ +
Sbjct: 362 EFKD-----EIDEWVINAIKGIGIDTAKGVLNAPREMLIEKADLEENTVDDVLRILKAEF 416
Query: 418 EG 419
E
Sbjct: 417 EA 418
>gi|260060676|ref|YP_003193756.1| transcription elongation factor NusA [Robiginitalea biformata
HTCC2501]
gi|88784806|gb|EAR15975.1| transcription elongation factor NusA [Robiginitalea biformata
HTCC2501]
Length = 410
Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats.
Identities = 131/419 (31%), Positives = 233/419 (55%), Gaps = 15/419 (3%)
Query: 7 LELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
+E L + ++ + +K IDR +++++ + + A + +G+ + + INP+ GD+ ++
Sbjct: 1 MENLALIESFSEFKDDKFIDRVTLMAILEEVFRAALKRKFGSDDNFDIIINPDKGDLEIW 60
Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
R VV + VE +ISL AR +P ++G VS+ + +D GR ++ + +Q +I K
Sbjct: 61 RNRVVVPDGEVEEPNEEISLSEARKIEPDFEVGEDVSEEVKLIDLGRRSILALRQNLIAK 120
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGD 180
+ E + Y +FKD GEI + V + + +I +D ++ ++ +++ I + R GD
Sbjct: 121 IHEHDNTTIYKQFKDLEGEIYTAEVHHIRHKAIILLDDEGNELIMPKEKQIPSDFFRKGD 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
V+ I V + P +++SRT P+F+ +LFH E+PE+++G++ +K R PG +AK+A
Sbjct: 181 NVRGIIESVELKGNKPLIIMSRTSPKFLEQLFHQEIPEVFDGLITIKKAVRIPGEKAKVA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S D IDPVGACVGM+GSR+ +V EL +E ID++ W+ + V +L PA VT+V
Sbjct: 241 VDSYDDRIDPVGACVGMKGSRIHGIVRELGNENIDVINWTNNPQLMVTRSLSPARVTQVK 300
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
L+++ +V + E++S AIGR G N+RLA QLTG+ ID+ E + +F +
Sbjct: 301 LNDENMTAQVYLKPEEVSKAIGRGGHNIRLAGQLTGYEIDVYREGVEEDVELTEFRD--- 357
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
++E I L G + + ++ +EET +++ +E E
Sbjct: 358 ------EIEEWIIMELRKIGLDTARAVLEQDVEDLVKRTDLEEETILDVIRILKEEFED 410
>gi|312134896|ref|YP_004002234.1| transcription termination factor nusa [Caldicellulosiruptor
owensensis OL]
gi|311774947|gb|ADQ04434.1| transcription termination factor NusA [Caldicellulosiruptor
owensensis OL]
Length = 353
Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats.
Identities = 127/343 (37%), Positives = 200/343 (58%), Gaps = 9/343 (2%)
Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM----SDIRVEINPETG 58
+ + EL D + E I++D V SV+ ++ A + + G S+++V I+PE G
Sbjct: 7 TLDFQELFSAIDELEREYKIEKDYVYSVLESALLTAYKQVKGIKDKNLSNVKVSIDPEKG 66
Query: 59 DISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+ ++ +VVE V++ +I L+ A+ D IG +V+ +P F R A + +Q +
Sbjct: 67 SVKIYEYKKVVENVKDKKSEILLEDAQKIDKRYKIGDIVAIEVPISQFSRKAAMTVRQTV 126
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENL 176
I K+RE R + ++ KV I++G ++R++ NVIV++ G + ++ +E I E
Sbjct: 127 IGKIREKRRSIIFEDYSSKVDNIVTGVIQRIDKKNVIVEIEGGKVEAILPMEEQIPGEEY 186
Query: 177 RPGDRVKSYIYDVRREQRGPQ--VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234
+PG +K YI +V+ + + V LSRTHP + +L EVPEI GI+++KA++R+ G
Sbjct: 187 KPGVMMKFYITEVKIPPKEKEPIVYLSRTHPNLIKRLMENEVPEIQEGIIEIKAIAREAG 246
Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294
SR+K+AV+S+ +DPVGAC+G +G R+Q V+ L EKIDIV WS D F+ NAL PA
Sbjct: 247 SRSKVAVYSNSLKVDPVGACIGEKGIRIQNVLKHLNGEKIDIVKWSSDIGEFIKNALSPA 306
Query: 295 IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337
V + L+ + V+VP QLSLAIGR G R A T W
Sbjct: 307 EVVHIDLNLIEKKAFVLVPNSQLSLAIGRGGTE-RSACSKTDW 348
>gi|313205355|ref|YP_004044012.1| nusa antitermination factor [Paludibacter propionicigenes WB4]
gi|312444671|gb|ADQ81027.1| NusA antitermination factor [Paludibacter propionicigenes WB4]
Length = 421
Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats.
Identities = 130/410 (31%), Positives = 232/410 (56%), Gaps = 11/410 (2%)
Query: 6 RLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62
+ E + + D + E KSIDR ++SVM +S + L+GT + V INP+ GD +
Sbjct: 3 KKETISLIDTFSEFKELKSIDRSTLISVMEESFRNVISKLFGTDENYDVIINPDKGDFEI 62
Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
+R VV E++ + QISL A+ D +I V+D + + FGR A+ + +Q +
Sbjct: 63 YRNRTVVADEDLTDPNLQISLTEAKKIDEDYEIDEDVTDTVDFLSFGRRAILTLRQTLSS 122
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPG 179
K+ E ++D + ++ +KVG+I+S + + + +++D ++ + + E I + R G
Sbjct: 123 KILELQKDNVFSKYSEKVGQIVSAELYQIWKKEMLLIDDEGNELYLPKTEQIPTDFYRKG 182
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
D V++ + V + P+++LSR P F+ +LF +EVPEI+ G++ +K ++R PG RAK+
Sbjct: 183 DTVRAVVAMVENKNNNPKIILSRISPVFLERLFELEVPEIHEGLITIKKIARIPGERAKV 242
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++ +
Sbjct: 243 AVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTNNVNLFISRALSPAKISSI 302
Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
L+E + E+ + E++S AIG+ G N++LA L+G+T+D+ E + +E
Sbjct: 303 RLNEAEKKAEIYLKPEEVSQAIGKGGLNIKLAGMLSGYTLDVFRE-----MDEDTESEDI 357
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409
+ +D+ + L A G + + + ++ +EET E+
Sbjct: 358 YLDEFSDEIDQWVIDALKAIGCDTAKSVLAISRQDLVRRTDLEEETIDEV 407
>gi|218131824|ref|ZP_03460628.1| hypothetical protein BACEGG_03445 [Bacteroides eggerthii DSM 20697]
gi|317474560|ref|ZP_07933834.1| transcription termination factor NusA [Bacteroides eggerthii
1_2_48FAA]
gi|217986127|gb|EEC52466.1| hypothetical protein BACEGG_03445 [Bacteroides eggerthii DSM 20697]
gi|316909241|gb|EFV30921.1| transcription termination factor NusA [Bacteroides eggerthii
1_2_48FAA]
Length = 422
Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats.
Identities = 137/424 (32%), Positives = 241/424 (56%), Gaps = 11/424 (2%)
Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD
Sbjct: 2 AKKEETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61
Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
++R EVV + +EN QISL A+ D S ++G V+D + FGR A+ + +Q +
Sbjct: 62 EIWRNREVVADKDLENPNLQISLSEAQKIDASYEVGEEVTDEVNFAKFGRRAILNLRQTL 121
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177
K+ E E+D Y ++ DKVG II+ V + + +++D ++ ++ + E I + R
Sbjct: 122 ASKILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA
Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++
Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKIS 301
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
+ L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E ++++ + + +
Sbjct: 302 SIRLNEEEHKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDEAVEDEDIYLD 361
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
+ +D + + A G + + + +EET E+ +
Sbjct: 362 EFRD-----EIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEVLRILKSEF 416
Query: 418 EGID 421
E +
Sbjct: 417 EEEE 420
>gi|163753871|ref|ZP_02160994.1| transcription elongation factor NusA [Kordia algicida OT-1]
gi|161326085|gb|EDP97411.1| transcription elongation factor NusA [Kordia algicida OT-1]
Length = 410
Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats.
Identities = 132/419 (31%), Positives = 234/419 (55%), Gaps = 15/419 (3%)
Query: 7 LELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
+E L + ++ + +K IDR +++++ D + A + +G+ + + INP+ GD+ ++
Sbjct: 1 MENLALIESFSEFKDDKLIDRVTLMAILEDVFRNALKKKFGSDDNFDIIINPDKGDLEIW 60
Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
R VV + VE+ +I L AR +P ++G VS+ + +D GR A+ + +Q +I K
Sbjct: 61 RNRIVVADGEVEDPNQEIELTDARKIEPDFEVGEDVSEEVKLIDLGRRAILALRQNLISK 120
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGD 180
+ E + Y +FKD VG+I + V + + VI +D ++ V+ ++ I + R G+
Sbjct: 121 IHEHDNTTIYKQFKDLVGDIYTAEVHHIRHRAVILLDDEGNEIVLPKENQIPSDFFRKGE 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
V+ I V + P +++SRT P+F+ KLF E+PE+++G++ VK V R PG +AK+A
Sbjct: 181 NVRGIIDRVDLKGNKPMIVMSRTAPEFLEKLFEQEIPEVFDGLITVKKVVRIPGEKAKVA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S D IDPVGACVGM+GSR+ +V EL +E ID++ ++ + ++ AL PA V+ +
Sbjct: 241 VDSYDDRIDPVGACVGMKGSRIHGIVRELGNENIDVINYTTNLQLYITRALSPARVSSLK 300
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DE+ R+EV + E++S AIG+ G N+RLA QLTG+ ID+ E + +F++ +
Sbjct: 301 IDEEAKRVEVFLKPEEVSKAIGKGGFNIRLAGQLTGYEIDVYREGVEEDVELTEFSDEIE 360
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
++ G + + ++ + +EET E+ +E E
Sbjct: 361 AWV---------IEEFKKIGLDTAKSVLDQELDFLVKQTDLEEETVGEVIRILKEEFED 410
>gi|312892421|ref|ZP_07751916.1| transcription termination factor NusA [Mucilaginibacter paludis DSM
18603]
gi|311295205|gb|EFQ72379.1| transcription termination factor NusA [Mucilaginibacter paludis DSM
18603]
Length = 411
Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats.
Identities = 130/402 (32%), Positives = 231/402 (57%), Gaps = 10/402 (2%)
Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77
K+IDR ++SV+ D + R YGT + V +N + GD+ ++R V+E+ E+
Sbjct: 17 KNIDRPTMMSVLEDVFRSMIRKKYGTDENCDVIVNTDNGDLEIWRTRVVMEDGFSEDDDL 76
Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137
+I L A+ DP +++G + + FGR A+ +A+Q ++ K+ E E+D Y ++KD+
Sbjct: 77 EIELAEAKLLDPDLEVGDEHIELITLESFGRRAILAARQTLVSKILELEKDEIYKKYKDR 136
Query: 138 VGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196
VGEII+G V + + +++D ++ ++ + E I + + GD V++ ++ V P
Sbjct: 137 VGEIITGEVYQVWKKETLVLDDEGNELLLPKSEQIPADYFKKGDSVRAVVHKVDMMNTNP 196
Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256
++++SRT P+F+ +LF +EVPEI++G++ +K + R+PG RAK+AV S D IDPVGACVG
Sbjct: 197 KIIISRTAPEFLQRLFELEVPEIFDGLITIKKIVREPGERAKVAVESYDDRIDPVGACVG 256
Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316
M+GSR+ +V EL++E ID++ ++ + ++ AL PA +T + LD+D V + +Q
Sbjct: 257 MKGSRIHGIVRELKNENIDVINFTNNVQLYIQRALSPAKITSIKLDDDKKTAAVYLKPDQ 316
Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376
+SLAIGR G N++LA +LTG+ ID+ E + + E + ++ I
Sbjct: 317 VSLAIGRGGHNIKLAGKLTGYEIDVYREAD-------EHEEDVDIEEFSDEIEGWILDEF 369
Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
G + + + + E+ +EET ++ + E
Sbjct: 370 KRIGLDTAKSVLALSVGELVKRTDLEEETVKDVLSILQAEFE 411
>gi|77414451|ref|ZP_00790602.1| transcription termination factor NusA [Streptococcus agalactiae
515]
gi|77159496|gb|EAO70656.1| transcription termination factor NusA [Streptococcus agalactiae
515]
Length = 381
Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats.
Identities = 125/361 (34%), Positives = 208/361 (57%), Gaps = 15/361 (4%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+L+ + EK I+++ ++ + +S++ A + YG +E N + D +++ + EV
Sbjct: 1 MLEAFRILEEEKHINKEDIIDAVTESLKSAYKRRYGQSESCVIEFNEKKADFTVYTVREV 60
Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
V+EV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R R+
Sbjct: 61 VDEVFDSRLEISLKDALAISSAYELGDKIRFEESVTEFGRVAAQSAKQTIMEKMRRQMRE 120
Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
+ E+K GEI++GTV+R + + V+LG+ + + + I E+ + D + Y+Y
Sbjct: 121 VTFNEYKQHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGESFKSHDMIDVYVYK 180
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S +S++
Sbjct: 181 VENNPKGVNVFVSRSHPEFIKRIMEREIPEVFDGTVEIMSVSREAGDRTKVAVRSHNSNV 240
Query: 249 DPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRPA 294
D +G VG GS ++ V++ E ID++ W D A F+ NA+ PA
Sbjct: 241 DAIGTIVGRGGSNIKKVISNFHPKRVDAKTGLEIPVEENIDVIQWVEDPAEFIYNAIAPA 300
Query: 295 IVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353
V V+ DED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E +
Sbjct: 301 EVDMVLFDDEDTKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYEKMEAQ 360
Query: 354 D 354
+
Sbjct: 361 E 361
>gi|225016950|ref|ZP_03706142.1| hypothetical protein CLOSTMETH_00865 [Clostridium methylpentosum
DSM 5476]
gi|224950264|gb|EEG31473.1| hypothetical protein CLOSTMETH_00865 [Clostridium methylpentosum
DSM 5476]
Length = 412
Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats.
Identities = 145/403 (35%), Positives = 229/403 (56%), Gaps = 6/403 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E + +A EK I + ++ ++++I A + +G + ++ V I+P T + +
Sbjct: 2 NNEFFDALEMIAKEKGISMEYLIEKISNAITIAVKKDFGGIENVNVVIDPLTRRYKVSII 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV EVE+ +I + A +G V L FGR+A Q+AK VI Q +REA
Sbjct: 62 KTVVREVEDPVNEILIDEALKYSKRAMVGEPVEIKLETKQFGRIAAQTAKHVIRQGIREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGN--VIVDLGNSDGVIRRDETISRENLRPGDRVK 183
ER++ + DKVGE+I+ TV +++ N VIV++ S+ ++ ++E + ++L PGD+VK
Sbjct: 122 EREQMLAQMGDKVGEVITATVSKIDPTNGNVIVEIDKSEVILFKNEQLPTDHLLPGDKVK 181
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
Y+ DV ++ + +SRTH + +LF +EVPEI++G V+VK++SR+ GSR K+AV+S
Sbjct: 182 VYVVDVMASEKRCSLKISRTHKDLVKRLFEIEVPEIFDGTVEVKSISREAGSRTKIAVYS 241
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-D 302
D ++DP+GAC+G +G RV ++ EL EKID+V +S D A F+ AL PA V +V L D
Sbjct: 242 KDENVDPIGACIGPKGMRVGNIIDELGGEKIDVVKYSEDPAKFIAEALSPATVVEVQLSD 301
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
+ V VP QLSLAIG +GQN +LA++LTG+ IDI E S ++ +
Sbjct: 302 DGEKIAFVSVPDHQLSLAIGNKGQNAKLAARLTGYKIDISPE---SGFYGEEKRLAAKQE 358
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEET 405
+ + L E +DV + I S E D+E
Sbjct: 359 PKEDAEEAEQQELPEDEVVSDVGQPEEQSEENIPSEEAADDEI 401
>gi|255692953|ref|ZP_05416628.1| transcription termination factor NusA [Bacteroides finegoldii DSM
17565]
gi|260621264|gb|EEX44135.1| transcription termination factor NusA [Bacteroides finegoldii DSM
17565]
Length = 421
Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats.
Identities = 138/424 (32%), Positives = 242/424 (57%), Gaps = 11/424 (2%)
Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD
Sbjct: 2 AKKEETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61
Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
++R EVV E++ N QISL A+ D S ++G V+D + FGR A+ + +Q +
Sbjct: 62 EIWRNREVVADEDLTNPNMQISLSEAQKIDASYEVGEEVTDEVIFAKFGRRAILNLRQTL 121
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177
K+ E E+D Y ++ DKVG II+ V + + +++D ++ ++ + E I + R
Sbjct: 122 ASKILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA
Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++
Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKIS 301
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
+ L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E ++S+ + + +
Sbjct: 302 SIRLNEEEKKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDESVADEDIYLD 361
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
+ +D + + A G + + + +EET E+ +
Sbjct: 362 EFRD-----EIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEVIRILKSEF 416
Query: 418 EGID 421
E +
Sbjct: 417 EESE 420
>gi|313897438|ref|ZP_07830981.1| transcription termination factor NusA [Clostridium sp. HGF2]
gi|312957808|gb|EFR39433.1| transcription termination factor NusA [Clostridium sp. HGF2]
Length = 566
Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats.
Identities = 145/445 (32%), Positives = 238/445 (53%), Gaps = 16/445 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66
+ + A+ ++ + ++VV+ + +++ KA R + +RV++N ++GDI +++
Sbjct: 5 DFMAAMQAIETDRKLSKEVVVDALQEALAKAFRKHIEIPDALVRVDVNEKSGDIKVYQQR 64
Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
+VE VE+ +ISL+ A+ + +++GGVV + + D GR AV AK V+ QK+REAE
Sbjct: 65 LIVENVEDDELEISLEDAKRVNQELELGGVVEEEVSIADLGRAAVILAKNVMKQKIREAE 124
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
+ Y E+ DKV E++ GT++ VE +V++G + ++ +++ I E R G+ ++ I
Sbjct: 125 KLVVYEEYCDKVEEMVMGTIESVEEKFCVVNIGKTLALMPKNQQIPNERYREGEMIRVVI 184
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
+V +E +G QVL+SR + +LF EVPEI+ GI+++KA++R+ G R K+AV+S +
Sbjct: 185 TEVNKETKGAQVLVSRGDATLVKRLFEKEVPEIFQGIIEIKAIAREAGERTKMAVYSHNE 244
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306
+IDP+GAC+G RG RVQ ++ EL EKIDI WS D + NAL PA V V+ E+
Sbjct: 245 NIDPIGACIGPRGQRVQVIIDELGGEKIDIFEWSEDVTELIKNALSPAEVLAVIPSEERK 304
Query: 307 -RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
+ V+VP QLSLAIG+RG+N RLA +LTG IDI E + + +
Sbjct: 305 GGLLVVVPDNQLSLAIGKRGKNARLAVKLTGNKIDIKAETDVDAAGINWKEIAMKQREEF 364
Query: 366 INVDEIIAHLLVAEGFADVE--------ELACVKISEIASIEGFDEETAVEIQGRAREYL 417
+ + E F + + A V E + E E E
Sbjct: 365 LARQQEAKLAAQMERFEENAQPQDALSLDDAGVSFQEAVTEEAVSEPVVEESSEPVEATA 424
Query: 418 EGIDITL------QKKIRELGVSEE 436
++ + E EE
Sbjct: 425 SPAVEEATVSAPVEEVVEEAQPQEE 449
>gi|226355942|ref|YP_002785682.1| transcription elongation factor NusA [Deinococcus deserti VCD115]
gi|226317932|gb|ACO45928.1| putative Transcription elongation factor NusA [Deinococcus deserti
VCD115]
Length = 395
Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats.
Identities = 137/388 (35%), Positives = 219/388 (56%), Gaps = 3/388 (0%)
Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70
VA ++I+ ++ S+ +A I V ++P++G++ + + EVVE
Sbjct: 10 DALREVAQARNINELQLIEAFEQSLAQAYTRNVEPDKRIEVHLDPQSGELEVLVVREVVE 69
Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130
+VE+ QISL A + DP ++IG + P+ F R+A+Q+AKQ + QK+RE ER+
Sbjct: 70 KVEDEHLQISLADALELDPGVEIGMEMEFPVDREKFSRIALQAAKQTLTQKMRETERNVV 129
Query: 131 YLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDV 189
+ E+KD+ G++++ V R + N V+LG + ++ E I E L PG+RVK Y+ +V
Sbjct: 130 FNEYKDREGQVLTAQVVRSDNKGNWFVELGAGEAILPPREQIPGEKLTPGNRVKIYLKEV 189
Query: 190 RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSID 249
R+ +GP +L SR + + L E+PE+ NGIV+VKA+SR+ G R+K+AVFS +S++D
Sbjct: 190 RKTPKGPTILASRADERLLDYLLKQEIPEVANGIVEVKAISREAGQRSKVAVFSHNSNVD 249
Query: 250 PVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIE 309
P+GAC+G RG+R+QAV EL E++D+++W ++ F+ NAL PA V + + D
Sbjct: 250 PIGACIGHRGNRIQAVTGELGRERVDVILWDANTREFIRNALSPAKVGLIEVQPDRREAT 309
Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVD 369
V V +QLSLAIG+ GQNVRLA++LTG+ ID+ S D
Sbjct: 310 VTVTPDQLSLAIGKGGQNVRLAAKLTGFKIDLRETAAISDLDAAMQQALQDDQDGRDGDD 369
Query: 370 EIIAHLLVAEGFADVEELACVKISEIAS 397
+ F D + +A +
Sbjct: 370 TAKSA--FDALFKDSKSVATASPDDTQD 395
>gi|333024104|ref|ZP_08452168.1| putative transcription termination factor NusA [Streptomyces sp.
Tu6071]
gi|332743956|gb|EGJ74397.1| putative transcription termination factor NusA [Streptomyces sp.
Tu6071]
Length = 369
Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats.
Identities = 127/344 (36%), Positives = 194/344 (56%), Gaps = 18/344 (5%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ + EK I D ++ + ++ A + RV ++ E+G ++++ V
Sbjct: 5 MSALRGLVREKEISFDRLVEAIESALLIAYHRTEHSHRRARVHLDRESGHVTVW-----V 59
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
+E E + + AR R P DFGR+A +AKQVI+Q++R+A+ D
Sbjct: 60 KEEEADLADLG-EDARPR----------EFDDTPSDFGRIAATTAKQVILQRLRDAQDDA 108
Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
E+ + G+I++G V++ + NV+VD+G + ++ E + E G R++SY+
Sbjct: 109 TLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGEEYTHGLRLRSYVVR 168
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S +
Sbjct: 169 VAKGMRGPSVTLSRTHPNLVKKLFSLEVPEIADGSVEIAAIAREAGHRTKIAVRSNRSGL 228
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307
+ GAC+G G RV+ V+ EL EKIDIV WS + A V +AL PA V+ V +D
Sbjct: 229 NAKGACIGPMGGRVRNVMAELNGEKIDIVDWSDNPADLVAHALSPARVSHVEVVDLATRS 288
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351
V VP QLSLAIG+ GQN RLA++LTGW IDI + E +
Sbjct: 289 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTETTDED 332
>gi|311748745|ref|ZP_07722530.1| transcription termination factor NusA [Algoriphagus sp. PR1]
gi|126577279|gb|EAZ81527.1| transcription termination factor NusA [Algoriphagus sp. PR1]
Length = 414
Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats.
Identities = 135/405 (33%), Positives = 231/405 (57%), Gaps = 10/405 (2%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
L++ A K++DR ++ ++ D + R + + V IN + GD+ +FR+ E+
Sbjct: 6 LIESFAEFARSKNVDRPTMIRILEDVFRAMIRKKFENDENFDVTINADKGDLEIFRIREI 65
Query: 69 VEEVENY---TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
V++ +ISL AR +P +IG V + + +FGR AVQ A+Q +IQ++++
Sbjct: 66 VDDNSEDIWDFDKISLTEARKIEPDFEIGEEVYEKIELEEFGRRAVQMARQTLIQRIKDL 125
Query: 126 ERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
E+D Y +++++VGEI+S V ++ +++D ++ ++ + E I ++ R GD VK+
Sbjct: 126 EKDILYNKYEEQVGEIVSAEVYQILGREVLLMDNEGNELILPKGEQIPKDRFRKGDAVKA 185
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
++ V P+++LSRT P F+ +LF EVPE+Y+G++ + + R+PG RAK+AV S
Sbjct: 186 IVHRVDMMNGNPKIILSRTSPVFLERLFENEVPEVYDGLITIVKIVREPGERAKVAVESY 245
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGM+GSR+ AVV EL++E ID++ ++ + +V AL PA V+ + D++
Sbjct: 246 DDRIDPVGACVGMKGSRIHAVVRELQNENIDVINFTDNLDLYVTRALSPAKVSSITADQE 305
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
RI V + +Q+SLAIG+ G N++LAS+L G+ ID+ E + E
Sbjct: 306 TKRISVFLKPDQVSLAIGKGGYNIKLASKLVGYEIDVFRELN------EYEEEDVDLVEF 359
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409
+D I L G + + + ++ +EET EI
Sbjct: 360 TDEIDGWIIEELKKTGLDTAKSVLTLSKEDLLRRTELEEETIDEI 404
>gi|84498575|ref|ZP_00997338.1| transcription elongation factor NusA [Janibacter sp. HTCC2649]
gi|84381108|gb|EAP96993.1| transcription elongation factor NusA [Janibacter sp. HTCC2649]
Length = 385
Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats.
Identities = 128/366 (34%), Positives = 202/366 (55%), Gaps = 29/366 (7%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL--- 66
L + V E+ I DV++ + ++ A + G + R E++ +TG ++++
Sbjct: 5 LAVLRGVERERDISLDVLIPAIEQALLLAYQRTDGAYRNSRAELDRKTGHVTIWAREEFE 64
Query: 67 -----------------EVVEEVENYTCQIS-LKVARDRDP----SIDIGGVVSDPLPPM 104
+V + + R P + G D P
Sbjct: 65 VPVEEEPEAPAETPTPDTASADVAAPATESAGATEERVERPAPRMRREYGPEFDD--TPT 122
Query: 105 DFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDG 163
DFGRVA +A+QVI+Q++R+ E D +FK + G+I++G +++ + +V VD G +G
Sbjct: 123 DFGRVAAATARQVIVQRLRDIEDDAIMGDFKGREGDIVAGVIQQSPDPRHVTVDFGTVEG 182
Query: 164 VIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGI 223
++ E + E G R++ Y+ V+R RGPQ+ LSRTHP + KLF +EVPEI +G
Sbjct: 183 ILPVAEQVPGEKYVHGQRLRVYVVSVKRGLRGPQIGLSRTHPNLVRKLFALEVPEIADGS 242
Query: 224 VQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283
V++ A++R+ G R K+AV + + ++ GAC+G G+RV+AV+ EL EKIDIV +S D
Sbjct: 243 VEIAALARESGHRTKIAVHTKVAGLNAKGACIGPMGARVRAVMAELHGEKIDIVDFSEDP 302
Query: 284 ATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342
A+F+ +AL P+ V V + D + VIVP QLSLAIGR GQN RLA++LTGW IDI
Sbjct: 303 ASFIASALSPSRVQSVEIVDWQLRAARVIVPDYQLSLAIGREGQNARLAAKLTGWRIDIR 362
Query: 343 TEEEDS 348
++ +
Sbjct: 363 SDNPTA 368
>gi|319744370|gb|EFV96730.1| transcription termination factor NusA [Streptococcus agalactiae
ATCC 13813]
Length = 386
Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats.
Identities = 127/378 (33%), Positives = 212/378 (56%), Gaps = 15/378 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + EK I+++ ++ + +S++ A + YG +E N + D +++ + E
Sbjct: 7 EMLEAFRILEEEKHINKEDIIDAVTESLKSAYKRRYGQSESCVIEFNEKKADFTVYTVRE 66
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VV+EV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R R
Sbjct: 67 VVDEVFDSRLEISLKNALAISSAYELGDKIRFEESVTEFGRVAAQSAKQTIMEKMRRQMR 126
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ + E+K GEI++GTV+R + + V+LG+ + + + I E+ + D + Y+Y
Sbjct: 127 EVTFNEYKQHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGESFKSHDMIDVYVY 186
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S +S+
Sbjct: 187 KVENNPKGVNVFVSRSHPEFIKRIMEREIPEVFDGTVEIMSVSREAGDRTKVAVRSHNSN 246
Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293
+D +G VG GS ++ V++ E ID++ W D A F+ NA+ P
Sbjct: 247 VDAIGTIVGRGGSNIKKVISNFHPKRVDAKTGLEIPVEENIDVIQWVEDPAEFIYNAIAP 306
Query: 294 AIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
A V V+ DED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 307 AEVDMVLFDDEDTKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYEKMEA 366
Query: 353 KDFNERTQFFMQAINVDE 370
++ + D+
Sbjct: 367 QELQTEEVAQESEVISDK 384
>gi|53711553|ref|YP_097545.1| transcription elongation factor NusA [Bacteroides fragilis YCH46]
gi|60679812|ref|YP_209956.1| transcription elongation factor NusA [Bacteroides fragilis NCTC
9343]
gi|253564386|ref|ZP_04841843.1| transcription elongation factor NusA [Bacteroides sp. 3_2_5]
gi|265764945|ref|ZP_06093220.1| transcription termination factor NusA [Bacteroides sp. 2_1_16]
gi|52214418|dbj|BAD47011.1| putative nitrogen utilization substance protein [Bacteroides
fragilis YCH46]
gi|60491246|emb|CAH05994.1| putative N utilization substance protein A [Bacteroides fragilis
NCTC 9343]
gi|251948162|gb|EES88444.1| transcription elongation factor NusA [Bacteroides sp. 3_2_5]
gi|263254329|gb|EEZ25763.1| transcription termination factor NusA [Bacteroides sp. 2_1_16]
gi|301161335|emb|CBW20875.1| putative N utilization substance protein A [Bacteroides fragilis
638R]
Length = 420
Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats.
Identities = 136/412 (33%), Positives = 238/412 (57%), Gaps = 11/412 (2%)
Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD
Sbjct: 2 AKKEETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61
Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
++R EVV E++ N QISL A+ D S ++G V+D + FGR A+ + +Q +
Sbjct: 62 EIWRNREVVADEDLTNPNMQISLTEAQKIDASYEVGEEVTDEVIFAKFGRRAILNLRQTL 121
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177
K+ E E+D Y ++ DKVG II+ V + + +++D ++ ++ + E I + R
Sbjct: 122 ASKILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA
Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++
Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKIS 301
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
+ L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E +++ + + +
Sbjct: 302 SIRLNEEERKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDENAQDEDIYLD 361
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409
+ +D + + A G + + + +EET E+
Sbjct: 362 EFRD-----EIDGWVIDAIKAIGIDTAKSVLNAPREMLIEKTDLEEETVDEV 408
>gi|76798057|ref|ZP_00780314.1| transcription termination factor NusA [Streptococcus agalactiae
18RS21]
gi|77406370|ref|ZP_00783432.1| transcription termination factor NusA [Streptococcus agalactiae
H36B]
gi|77408786|ref|ZP_00785516.1| transcription termination factor NusA [Streptococcus agalactiae
COH1]
gi|77411664|ref|ZP_00788004.1| transcription termination factor NusA [Streptococcus agalactiae
CJB111]
gi|22533395|gb|AAM99284.1|AE014208_24 N utilization substance protein A [Streptococcus agalactiae
2603V/R]
gi|76586616|gb|EAO63117.1| transcription termination factor NusA [Streptococcus agalactiae
18RS21]
gi|77162308|gb|EAO73279.1| transcription termination factor NusA [Streptococcus agalactiae
CJB111]
gi|77172631|gb|EAO75770.1| transcription termination factor NusA [Streptococcus agalactiae
COH1]
gi|77175039|gb|EAO77846.1| transcription termination factor NusA [Streptococcus agalactiae
H36B]
Length = 379
Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats.
Identities = 126/377 (33%), Positives = 211/377 (55%), Gaps = 15/377 (3%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+L+ + EK I+++ ++ + +S++ A + YG +E N + D +++ + EV
Sbjct: 1 MLEAFRILEEEKHINKEDIIDAVTESLKSAYKRRYGQSESCVIEFNEKKADFTVYTVREV 60
Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
V+EV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R R+
Sbjct: 61 VDEVFDSRLEISLKDALAISSAYELGDKIRFEESVTEFGRVAAQSAKQTIMEKMRRQMRE 120
Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
+ E+K GEI++GTV+R + + V+LG+ + + + I E+ + D + Y+Y
Sbjct: 121 VTFNEYKQHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGESFKSHDMIDVYVYK 180
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S +S++
Sbjct: 181 VENNPKGVNVFVSRSHPEFIKRIMEREIPEVFDGTVEIMSVSREAGDRTKVAVRSHNSNV 240
Query: 249 DPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRPA 294
D +G VG GS ++ V++ E ID++ W D A F+ NA+ PA
Sbjct: 241 DAIGTIVGRGGSNIKKVISNFHPKRVDAKTGLEIPVEENIDVIQWVEDPAEFIYNAIAPA 300
Query: 295 IVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353
V V+ DED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E +
Sbjct: 301 EVDMVLFDDEDTKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYEKMEAQ 360
Query: 354 DFNERTQFFMQAINVDE 370
+ + D+
Sbjct: 361 ELQTEEVAQESEVISDK 377
>gi|325856510|ref|ZP_08172199.1| transcription termination factor NusA [Prevotella denticola CRIS
18C-A]
gi|327313033|ref|YP_004328470.1| transcription termination factor NusA [Prevotella denticola F0289]
gi|325483479|gb|EGC86452.1| transcription termination factor NusA [Prevotella denticola CRIS
18C-A]
gi|326944462|gb|AEA20347.1| transcription termination factor NusA [Prevotella denticola F0289]
Length = 421
Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats.
Identities = 138/393 (35%), Positives = 229/393 (58%), Gaps = 8/393 (2%)
Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77
KSIDR ++SV+ +S + ++G+ + V +NP+ GD + R VV + VE+
Sbjct: 24 KSIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIHRNRVVVADGEVEDENK 83
Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137
QISL AR + ++G VS+ + FGR A+ + +Q + K+ E E D Y ++KD+
Sbjct: 84 QISLTDARKIEADYEVGEDVSEEVDFNKFGRRAILNLRQTLASKILELEHDSLYNKYKDR 143
Query: 138 VGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196
VG+IISG V + + ++VD N++ ++ +DE I R+ R G+ V++ I V E P
Sbjct: 144 VGQIISGEVYQTWKREVLLVDDENNELILPKDEQIPRDQYRKGETVRAVILRVDNENNNP 203
Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256
+++LSRT P+F+ +L EVPEI +G++ ++ ++R PG RAK+AV S D IDPVGACVG
Sbjct: 204 KIILSRTAPEFLERLLEAEVPEISDGLIAIRKIARMPGERAKIAVESFDDRIDPVGACVG 263
Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316
+RGSRV +V EL +E +D++ W+ ++ F+ AL PA V+ + +DE+ + EV + E+
Sbjct: 264 VRGSRVHGIVRELCNENLDVINWTANTKLFIQRALSPAKVSSLNVDEENKKAEVYLQPEE 323
Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376
+SLAIGR G N++LAS LTG+TID+ E ++ + + + +D+ + +
Sbjct: 324 VSLAIGRGGMNIKLASMLTGYTIDVFRELDEQNAEEDIYLDEFSD-----EIDQWVIDAI 378
Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEI 409
G ++ + +EET +
Sbjct: 379 KGIGLDTARQVLNAPREMLIEKADLEEETVDNV 411
>gi|332520007|ref|ZP_08396471.1| transcription termination factor NusA [Lacinutrix algicola
5H-3-7-4]
gi|332044566|gb|EGI80760.1| transcription termination factor NusA [Lacinutrix algicola
5H-3-7-4]
Length = 410
Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats.
Identities = 132/419 (31%), Positives = 235/419 (56%), Gaps = 15/419 (3%)
Query: 7 LELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
+E L + D+ + +K IDR +++++ D + A + +G + + INP+ GD+ ++
Sbjct: 1 MENLALIDSFSEFKDDKLIDRVTLMAILEDVFRSALKKKFGDDDNFDIIINPDKGDLEIW 60
Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
R VV + VE +ISL AR +P ++G VS+ + +D GR A+ + +Q +I K
Sbjct: 61 RNRIVVADGEVEEPNQEISLTAARKIEPDFEVGEDVSEEVKLIDLGRRAILALRQNLISK 120
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGD 180
+ E + + +FK+ G++ + V + + VI +D ++ ++ +D+ I + R GD
Sbjct: 121 IHEHDNTNIFKQFKELEGDLYTAEVHHIRHRAVILLDDEGNEIILPKDKQIPSDFFRKGD 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
V+ I V + P +++SRT P+F+ KLF E+PE+++G++ +K V R PG +AK+A
Sbjct: 181 NVRGIIDSVELKGNKPAIIMSRTSPKFLEKLFESEIPEVFDGLITIKNVVRIPGEKAKVA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S D IDPVGACVGM+GSR+ +V EL +E ID++ ++ + ++ AL PA VT +
Sbjct: 241 VDSYDDRIDPVGACVGMKGSRIHGIVRELGNENIDVINYTNNLQLYITRALSPARVTSIK 300
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DE+ R E I+ E++S AIGR G N+RLA QLTG+ ID+ E + ++F++
Sbjct: 301 IDEENKRAEAILKPEEVSKAIGRGGHNIRLAGQLTGYDIDVFREGAEEDVELREFSD--- 357
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+++ I G + + + ++ +EET +++ +E E
Sbjct: 358 ------EIEDWIIAEFSKAGLDTAKSILEQDVEDLVKRTDLEEETILDVIRILKEEFED 410
>gi|15639877|ref|NP_219327.1| transcription elongation factor NusA [Treponema pallidum subsp.
pallidum str. Nichols]
gi|189026115|ref|YP_001933887.1| transcription elongation factor NusA [Treponema pallidum subsp.
pallidum SS14]
gi|3323210|gb|AAC65849.1| N utilization substance protein A (nusA) [Treponema pallidum subsp.
pallidum str. Nichols]
gi|189018690|gb|ACD71308.1| N utilization substance protein A [Treponema pallidum subsp.
pallidum SS14]
gi|291060251|gb|ADD72986.1| transcription elongation protein NusA [Treponema pallidum subsp.
pallidum str. Chicago]
Length = 485
Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats.
Identities = 153/466 (32%), Positives = 241/466 (51%), Gaps = 28/466 (6%)
Query: 17 AYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYT 76
A EK +D D ++ +++ A ++ + T + V E + ++ VVEEV +
Sbjct: 13 AQEKGLDEDFAFKIVEQTLKAAYKTTFKTDENAVVTFGEE--RVCIYARKRVVEEVYDRV 70
Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136
++ L A + DP+ + V L DF R +VQ+A Q I + RE ++D Y E+K
Sbjct: 71 SEVDLSTALELDPTTSLDSEVLVELESEDFKRGSVQAAVQRITELSREIQKDALYAEYKS 130
Query: 137 KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196
K GEII G +R ++ VDLG +G++ + + +++ R DR+KS + +VR+ +
Sbjct: 131 KEGEIIVGYYQRARNEHIYVDLGKVEGLMPKSHQLPQDDYRQNDRIKSLVREVRKHPKSS 190
Query: 197 --QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254
Q++LSRT F+ +L +EVPEIY+GIV+V + R+PG R K+AV S +DPVGAC
Sbjct: 191 VVQLILSRTDSAFVKELLAVEVPEIYDGIVEVAKIVREPGYRTKIAVTSRRDDVDPVGAC 250
Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVP 313
VG RG R++ V+ EL DEKID++ +SPD F+ NAL PA V VV+ DE+ IV
Sbjct: 251 VGPRGIRIRMVIKELNDEKIDVLEYSPDPVIFIKNALSPAEVLNVVVLDEEKRSALAIVA 310
Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR------------QKDFNERTQF 361
+ QLS+AIG++G NVRLA++L W ID+ TE + + +
Sbjct: 311 ESQLSIAIGKQGLNVRLANRLVDWNIDVKTESQFEEMDVYTDTRRAAENLFDNDYQEESE 370
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
F + + +L G DV+ L + + ++EG DE E+
Sbjct: 371 FSSYVGFTPELIKILQDNGIQDVQTLVDLGEEGLRALEGMDEAHVQELLA---------A 421
Query: 422 ITLQKKIRELGVSEELCSIPGI--DSKIKVALGENGIKTMEDLAGC 465
I ++ E G + S PG D + E G++ D++ C
Sbjct: 422 IEENFEVVEEGEEASVTSSPGTGGDEDQALQCPECGVRITTDMSEC 467
>gi|237716685|ref|ZP_04547166.1| transcription elongation factor NusA [Bacteroides sp. D1]
gi|262405461|ref|ZP_06082011.1| transcription termination factor NusA [Bacteroides sp. 2_1_22]
gi|293370440|ref|ZP_06616993.1| transcription termination factor NusA [Bacteroides ovatus SD CMC
3f]
gi|294646240|ref|ZP_06723894.1| transcription termination factor NusA [Bacteroides ovatus SD CC 2a]
gi|294809092|ref|ZP_06767810.1| transcription termination factor NusA [Bacteroides xylanisolvens SD
CC 1b]
gi|229442668|gb|EEO48459.1| transcription elongation factor NusA [Bacteroides sp. D1]
gi|262356336|gb|EEZ05426.1| transcription termination factor NusA [Bacteroides sp. 2_1_22]
gi|292634432|gb|EFF52968.1| transcription termination factor NusA [Bacteroides ovatus SD CMC
3f]
gi|292638458|gb|EFF56822.1| transcription termination factor NusA [Bacteroides ovatus SD CC 2a]
gi|294443646|gb|EFG12395.1| transcription termination factor NusA [Bacteroides xylanisolvens SD
CC 1b]
Length = 424
Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats.
Identities = 137/413 (33%), Positives = 238/413 (57%), Gaps = 11/413 (2%)
Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD
Sbjct: 2 AKKEETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61
Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
++R EVV E++ N QISL A+ D S + G V+D + FGR A+ + +Q +
Sbjct: 62 EIWRNREVVADEDLTNPNMQISLSEAQKIDASYEEGEEVTDEVIFAKFGRRAILNLRQTL 121
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177
K+ E E+D Y ++ DKVG II+ V + + +++D ++ ++ + E I + R
Sbjct: 122 ASKILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA
Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++
Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKIS 301
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
+ L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E ++S+ + + +
Sbjct: 302 SIRLNEEEKKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDESVADEDIYLD 361
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410
+ +D + + A G + + + +EET E+
Sbjct: 362 EFRD-----EIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEVI 409
>gi|319953582|ref|YP_004164849.1| nusa antitermination factor [Cellulophaga algicola DSM 14237]
gi|319422242|gb|ADV49351.1| NusA antitermination factor [Cellulophaga algicola DSM 14237]
Length = 410
Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats.
Identities = 131/409 (32%), Positives = 224/409 (54%), Gaps = 15/409 (3%)
Query: 7 LELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
+E + + ++ + +K IDR +++++ D + A + +G+ + + INP+ GD+ ++
Sbjct: 1 MENIALIESFSEFKDDKFIDRVTLMAILEDVFRNALKKKFGSDDNFDIIINPDKGDLEIW 60
Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
R VVE+ VE +ISL AR +P ++G VS+ + + GR A+ + +Q +I K
Sbjct: 61 RNRIVVEDGEVEEPNEEISLSEARKIEPDFEVGEDVSEEVKLIQLGRRAILALRQNLISK 120
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGD 180
+ E + Y FKD G + + V + + VI+ D ++ ++ +D+ I + R GD
Sbjct: 121 IHEHDNTTIYKHFKDLEGGLYTAEVHHIRHKVVILLDDEGNELILPKDKQIPSDFFRKGD 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
V+ I V + P +++SRT P F+ LF E+PE+++G++ VK V R PG +AK+A
Sbjct: 181 NVRGIIESVELKGNKPVIVMSRTAPAFLEALFFQEIPEVFDGLITVKKVVRIPGEKAKVA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S D IDPVGACVGM+GSR+ +V EL +E ID++ W+ + V AL PA V+ V
Sbjct: 241 VDSYDDRIDPVGACVGMKGSRIHGIVRELGNENIDVINWTSNPQLLVTRALSPARVSSVK 300
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
LD++ +V + E++S AIGR G N+RLA QLTG+ ID+ E + +F++ +
Sbjct: 301 LDDEKMTAQVYLRPEEVSKAIGRGGHNIRLAGQLTGYEIDVFREGVEEDVELTEFSDEIE 360
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409
++ G + + ++ +EET VE+
Sbjct: 361 GWI---------IEEFKKIGMDTARSVLEQDVDDLVKRTDLEEETIVEV 400
>gi|119962022|ref|YP_947326.1| transcription termination factor NusA [Arthrobacter aurescens TC1]
gi|119948881|gb|ABM07792.1| transcription termination factor NusA [Arthrobacter aurescens TC1]
Length = 326
Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats.
Identities = 120/344 (34%), Positives = 197/344 (57%), Gaps = 24/344 (6%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ + E+ I D+++ + ++ A G R E++ ++G ++++
Sbjct: 5 MSALRLLEREREIPLDLLIPTIEQALLVAYHKTPGAFEKARAELDRKSGHVTIW------ 58
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
A + D + G D P FGR+A +A+Q+I+Q++R+ E D
Sbjct: 59 --------------ATEIDDDGEPIGEFED--TPAGFGRIAASTARQIILQRLRDVEDDN 102
Query: 130 QYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
EFK + GE+++G +++ ++I V+LG + ++ E + E G R+++++ D
Sbjct: 103 VLGEFKGREGELVAGMIQQGNNPHMIQVNLGAVEALLPPPEQVPGEKYLHGSRLRAFVVD 162
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V R +GP + LSR+HP + KLF MEVPEI + V++ A++R+ G R K+AV ++ +
Sbjct: 163 VHRGAKGPSITLSRSHPGLVRKLFEMEVPEIADHSVEIVALAREAGHRTKIAVKANTPGV 222
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307
+ GAC+G GSRV+AV+TEL DEKIDIV +S D ATF+ N+L P+ V V + DE
Sbjct: 223 NAKGACIGEMGSRVRAVMTELNDEKIDIVDFSDDPATFIANSLSPSRVNSVTITDESTRS 282
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351
V+VP QLSLAIG+ GQN RLA++LTGW IDI+++ +
Sbjct: 283 ARVVVPDYQLSLAIGKEGQNARLAAKLTGWRIDIVSDAAPAKTD 326
>gi|326333613|ref|ZP_08199851.1| transcription termination factor NusA [Nocardioidaceae bacterium
Broad-1]
gi|325948594|gb|EGD40696.1| transcription termination factor NusA [Nocardioidaceae bacterium
Broad-1]
Length = 325
Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats.
Identities = 130/340 (38%), Positives = 198/340 (58%), Gaps = 24/340 (7%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ I + E+ I DV++ + + A G + RV+++ +TG + +
Sbjct: 5 MSILRMLEREREISLDVLVEAIEQGLLTAYHKTEGAQTKARVDLDRKTGHVRVL------ 58
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
A + D ++ G D P FGR+A +AKQ+++Q++R+AE D
Sbjct: 59 --------------ASEVDDEGNVVGEYDD--TPEGFGRIAATTAKQIVLQRLRDAEDDV 102
Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
++ EF K G+I+SG +++ +V+VDLG +GVI E + E+ G R+K+ +
Sbjct: 103 KFGEFSGKEGDILSGVIQQGRNPDDVLVDLGRLEGVIPLSERVPGEDYGHGTRIKALVVS 162
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
VR+ RGPQ+ LSR+HP + KLF EVPEI +G V++ A++R+ G R K+AV S+ +
Sbjct: 163 VRKGMRGPQITLSRSHPNLVKKLFSFEVPEIADGTVEIAAIAREAGHRTKIAVKSTVPGV 222
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307
+ GAC+G G RV+ V++EL+ EKIDIV WS D V +AL PA V+ V +DE
Sbjct: 223 NAKGACIGPMGQRVRQVMSELQGEKIDIVDWSEDPKVLVASALSPARVSSVEIIDEATKS 282
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347
V+VP QLSLAIG+ GQN RLA++LTGW IDI ++EE
Sbjct: 283 ARVVVPDYQLSLAIGKEGQNARLAARLTGWRIDIRSDEET 322
>gi|270294867|ref|ZP_06201068.1| transcription termination factor NusA [Bacteroides sp. D20]
gi|270274114|gb|EFA19975.1| transcription termination factor NusA [Bacteroides sp. D20]
Length = 421
Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats.
Identities = 138/425 (32%), Positives = 245/425 (57%), Gaps = 11/425 (2%)
Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
A ++E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD
Sbjct: 2 AKKVETVSLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61
Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
++R EVV E++EN QI+L A+ D S ++G V+D + +FGR A+ + +Q +
Sbjct: 62 EIWRNREVVADEDLENPNLQIALSEAQKIDASYEVGEEVTDEVIFANFGRRAILNLRQTL 121
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177
K+ E E+D Y ++ DKVG II+ V + + +++D ++ ++ + E I + R
Sbjct: 122 ASKILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA
Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++
Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKIS 301
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
+ L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E +++I + + +
Sbjct: 302 SIRLNEEERKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDEAIEDEDIYLD 361
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
+ +D + + A G + + + +EET E+ ++
Sbjct: 362 EFRD-----EIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEVLRILKQEF 416
Query: 418 EGIDI 422
E +
Sbjct: 417 EEENE 421
>gi|329964512|ref|ZP_08301566.1| transcription termination factor NusA [Bacteroides fluxus YIT
12057]
gi|328524912|gb|EGF51964.1| transcription termination factor NusA [Bacteroides fluxus YIT
12057]
Length = 423
Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats.
Identities = 137/423 (32%), Positives = 242/423 (57%), Gaps = 11/423 (2%)
Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD
Sbjct: 2 AKKEETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61
Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
++R EVVE+ +EN QI+L A+ D S ++G V+D + +FGR A+ + +Q +
Sbjct: 62 EIWRNREVVEDAELENPNLQIALSEAQKIDASYEVGEEVTDEVIFANFGRRAILNLRQTL 121
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177
K+ E E+D Y ++ DKVG II+ V + + +++D ++ ++ + E I + R
Sbjct: 122 ASKILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA
Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++
Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKIS 301
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
+ L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E + ++ + + +
Sbjct: 302 SIRLNEEEHKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDQAVEDEDIYLD 361
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
+ +D + + A G + + + +EET E+ ++
Sbjct: 362 EFRD-----EIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEVLRILKQEF 416
Query: 418 EGI 420
E
Sbjct: 417 EEE 419
>gi|282881115|ref|ZP_06289802.1| transcription termination factor NusA [Prevotella timonensis CRIS
5C-B1]
gi|281304919|gb|EFA96992.1| transcription termination factor NusA [Prevotella timonensis CRIS
5C-B1]
Length = 421
Score = 286 bits (733), Expect = 5e-75, Method: Composition-based stats.
Identities = 137/403 (33%), Positives = 231/403 (57%), Gaps = 8/403 (1%)
Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77
K+IDR ++SV+ +S + +YG+ + V +NP+ GD ++R VV + VE+
Sbjct: 24 KNIDRATLVSVLEESFRNVLAKIYGSDENFDVIVNPDKGDFEIYRNRIVVADGEVEDENK 83
Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137
+I+LK A + +P +IG VS+P+ FGR A+ + +Q + KV E E D Y ++KD+
Sbjct: 84 EIALKEALEIEPDYEIGEEVSEPINFSKFGRRAILNLRQTLASKVLELEHDALYNKYKDR 143
Query: 138 VGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196
VG+IISG V + + +++D N++ ++ + E I + R G+ +++ I V E P
Sbjct: 144 VGQIISGEVYQIWKREVLLIDDENNELILPKSEQIPSDQYRKGETIRAVILRVDNENNNP 203
Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256
+++LSRT P F+ +L EVPEI +G++ +K ++R PG RAK+AV S D IDPVGACVG
Sbjct: 204 KIILSRTSPVFLERLLEAEVPEINDGLISIKRIARMPGERAKIAVESYDERIDPVGACVG 263
Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316
++GSRV +V EL +E ID+V ++ + V AL PA ++ + +DE+ + EV + E+
Sbjct: 264 VKGSRVHGIVRELCNENIDVVNYTSNIKLLVQRALSPAHISSINIDEENHKAEVYLKPEE 323
Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376
+SLAIGR G N++LAS LT +TID+ E D+ + + + +D+ + +
Sbjct: 324 VSLAIGRGGLNIKLASMLTEYTIDVFREVSDADADEDIYLDEFDD-----EIDQWVIDAI 378
Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+ G +++ + +EET + + E
Sbjct: 379 KSIGLDTAKQVLNAPREMLIEKADLEEETVDNLIKVLKAEFEQ 421
>gi|281422606|ref|ZP_06253605.1| transcription termination factor NusA [Prevotella copri DSM 18205]
gi|281403276|gb|EFB33956.1| transcription termination factor NusA [Prevotella copri DSM 18205]
Length = 420
Score = 286 bits (733), Expect = 5e-75, Method: Composition-based stats.
Identities = 132/403 (32%), Positives = 232/403 (57%), Gaps = 8/403 (1%)
Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77
K+IDR ++SV+ +S + ++G+ + V +NP+ GD ++R VV + VE+
Sbjct: 23 KNIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIYRNRIVVADGEVEDENK 82
Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137
+I+L AR +P ++G VS+ + FGR A+ + +Q + K+ E E D Y ++KD+
Sbjct: 83 EITLSEARKIEPDYEVGEDVSETVDFNKFGRRAILTLRQTLASKILELEHDSLYNKYKDR 142
Query: 138 VGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196
VG++ISG V + + +IVD N++ ++ + E I + R G+ V++ I V E P
Sbjct: 143 VGQVISGEVYQVWKREVLIVDDENNELMLPKTEQIPGDTYRKGETVRAVILRVDNENNNP 202
Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256
+++LSRT P F+ +L EVPEI +G++ ++ ++R PG RAK+AV + D IDPVGACVG
Sbjct: 203 KIILSRTAPIFLQRLLEAEVPEIADGLIAIRRIARLPGERAKIAVETFDERIDPVGACVG 262
Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316
++GSRV +V EL +E +D++ +S ++ F+ AL PA V+ + +D++ + EV + E+
Sbjct: 263 VKGSRVHGIVRELCNENLDVINYSSNTKLFIQRALAPAKVSSINVDDENKKAEVYLQPEE 322
Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376
+SLAIGR G N++LAS LT +TID+ E +++ + + + +D+ + +
Sbjct: 323 VSLAIGRGGMNIKLASMLTEYTIDVFREVDENEADEDIYLDEFSD-----EIDQWVIDAI 377
Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
G +++ + + +EET + R E
Sbjct: 378 KGIGLDTAKQVLNAPRNLLIEKADLEEETVDHVLSVLRAEFEQ 420
>gi|332878281|ref|ZP_08446007.1| transcription termination factor NusA [Capnocytophaga sp. oral
taxon 329 str. F0087]
gi|332683732|gb|EGJ56603.1| transcription termination factor NusA [Capnocytophaga sp. oral
taxon 329 str. F0087]
Length = 410
Score = 286 bits (733), Expect = 5e-75, Method: Composition-based stats.
Identities = 135/418 (32%), Positives = 231/418 (55%), Gaps = 11/418 (2%)
Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
N LEL++ +K I+R+ +++++ + + + YG+ + + INP+ GD+ +F
Sbjct: 1 MNSLELIESFSEFKDDKLINRETLMAILEEVFRNTLKKKYGSDDNFDIIINPDKGDLQIF 60
Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
R VVE+ V N +I+L VAR +P ++G VS+ + D GR A+ + +Q +I K
Sbjct: 61 RNRIVVEDGAVTNDNQEIALSVARKIEPDFEVGEDVSEEIKINDLGRRAILALRQNLISK 120
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGD 180
+ E + Y FKD +G+I+ + + + +I+ D ++ ++ +++ I + + G+
Sbjct: 121 IHEYDSTTIYRRFKDLIGQIVVAEIHHIRHKAIILLDDEGNEIILPKEKQIPSDFFKKGE 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
V+ I V + P +++SRT P F+ +LF E+PEI +GI+ V V R PG +AK+A
Sbjct: 181 HVRGIIESVELKSTKPTIIMSRTSPIFLQRLFEQEIPEIADGIITVNKVVRIPGEKAKVA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S D ID VGACVG+RG+R+ +V EL +E ID++ ++ + + + AL PA VT V
Sbjct: 241 VDSFDERIDAVGACVGVRGARIHGIVRELGNENIDVIPFTNNVSLLITRALAPAHVTSVT 300
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
L+E+ R +V +P E++S AIG+ G N+RLASQLTG+ ID+ E + + +
Sbjct: 301 LNEEEKRADVFLPNEEVSKAIGKSGYNIRLASQLTGYEIDVYREGITDEDIELTEFDD-- 358
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
++ I L G + + + E+ + +EET EIQ E E
Sbjct: 359 ------EIEGWIIEQLHNAGLDTAKSVLELTPEELMTRTDLEEETVKEIQRVLAEEFE 410
>gi|108804247|ref|YP_644184.1| NusA antitermination factor [Rubrobacter xylanophilus DSM 9941]
gi|108765490|gb|ABG04372.1| NusA antitermination factor [Rubrobacter xylanophilus DSM 9941]
Length = 381
Score = 286 bits (732), Expect = 6e-75, Method: Composition-based stats.
Identities = 132/338 (39%), Positives = 199/338 (58%), Gaps = 30/338 (8%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
LL + EK I + V V+ +S+ A R G + V ++ ETGD+ V
Sbjct: 5 LLSALHEIETEKGIPFETVKRVLEESLLAAYREREGAVEGAEVVLDRETGDLR------V 58
Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
+++ E+ I+ + DF R+A +Q +Q++ E
Sbjct: 59 MKDGED----ITPED--------------------FDFTRIAASLMRQNFMQRLNEVHNQ 94
Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
+ E+ +++G++++G V++ I+DLG + ++ E + E G R+K Y+ D
Sbjct: 95 QLVKEYGERIGDVVTGIVQQAHRRMTIIDLGRVEALLPASEQVPGERYENGQRLKVYLLD 154
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
++ RGP +++SR H + LF +EVPEIY+G+V++KAV+R+ G R+K+AV+S++ I
Sbjct: 155 IKEAGRGPSIIVSRRHEGLLRGLFELEVPEIYDGLVEIKAVAREAGLRSKVAVWSNEPGI 214
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308
DPVGACVG RGSRV+AVV+ELR+EKIDI+ W PD A F+ AL PA V +V LDE+ +
Sbjct: 215 DPVGACVGPRGSRVRAVVSELRNEKIDIIQWDPDPARFIAKALSPARVREVYLDEEEKQA 274
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346
EVIVP +QLSLAIGR GQN RLA +LT W IDI E +
Sbjct: 275 EVIVPDDQLSLAIGREGQNARLAVKLTDWKIDIKPESQ 312
>gi|325269683|ref|ZP_08136296.1| N utilization substance protein A [Prevotella multiformis DSM
16608]
gi|324988051|gb|EGC20021.1| N utilization substance protein A [Prevotella multiformis DSM
16608]
Length = 421
Score = 286 bits (732), Expect = 6e-75, Method: Composition-based stats.
Identities = 137/393 (34%), Positives = 228/393 (58%), Gaps = 8/393 (2%)
Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77
KSIDR ++SV+ +S + ++G+ + V +NP+ GD + R VV + VE+
Sbjct: 24 KSIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIHRNRVVVADGEVEDENK 83
Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137
QISL AR + ++G VS+ + FGR A+ + +Q + K+ E E D Y ++KD+
Sbjct: 84 QISLTDARKIEDDYEVGEDVSEEVDFNKFGRRAILNLRQTLASKILELEHDSLYNKYKDR 143
Query: 138 VGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196
VG+IISG V + + ++VD N++ ++ + E I R+ R G+ V++ I V E P
Sbjct: 144 VGQIISGEVYQTWKREVLLVDDENNELILPKGEQIPRDQYRKGETVRAVILRVDNENNNP 203
Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256
+++LSRT P+F+ +L EVPEI +G++ ++ ++R PG RAK+AV S D IDPVGACVG
Sbjct: 204 KIILSRTAPEFLERLLEAEVPEISDGLIAIRKIARMPGERAKIAVESFDDRIDPVGACVG 263
Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316
+RGSRV +V EL +E +D++ W+ ++ F+ AL PA V+ + +DE+ + EV + E+
Sbjct: 264 VRGSRVHGIVRELCNENLDVINWTANTKLFIQRALSPAKVSSLNVDEENKKAEVYLQPEE 323
Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376
+SLAIGR G N++LAS LTG+TID+ E ++ + + + +D+ + +
Sbjct: 324 VSLAIGRGGMNIKLASMLTGYTIDVFRELDEQNAEEDIYLDEFSD-----EIDQWVIDAI 378
Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEI 409
G ++ + +EET +
Sbjct: 379 KGIGLDTARQVLNAPREMLIEKADLEEETVDNV 411
>gi|160887870|ref|ZP_02068873.1| hypothetical protein BACUNI_00273 [Bacteroides uniformis ATCC 8492]
gi|317477855|ref|ZP_07937041.1| transcription termination factor NusA [Bacteroides sp. 4_1_36]
gi|156862556|gb|EDO55987.1| hypothetical protein BACUNI_00273 [Bacteroides uniformis ATCC 8492]
gi|316905991|gb|EFV27759.1| transcription termination factor NusA [Bacteroides sp. 4_1_36]
Length = 421
Score = 286 bits (732), Expect = 6e-75, Method: Composition-based stats.
Identities = 138/425 (32%), Positives = 245/425 (57%), Gaps = 11/425 (2%)
Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
A ++E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD
Sbjct: 2 AKKVETVSLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61
Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
++R EVV E++EN QI+L A+ D S ++G V+D + +FGR A+ + +Q +
Sbjct: 62 EIWRNREVVADEDLENPNLQIALSEAQKIDASYEVGEEVTDEVIFANFGRRAILNLRQTL 121
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177
K+ E E+D Y ++ DKVG II+ V + + +++D ++ ++ + E I + R
Sbjct: 122 ASKILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA
Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++
Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKIS 301
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
+ L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E +++I + + +
Sbjct: 302 SIRLNEEERKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDEAIEDEDIYLD 361
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
+ +D + + A G + + + +EET E+ ++
Sbjct: 362 EFRD-----EIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEVLRILKQEF 416
Query: 418 EGIDI 422
E +
Sbjct: 417 EEEEQ 421
>gi|315606722|ref|ZP_07881732.1| transcription termination factor NusA [Prevotella buccae ATCC
33574]
gi|315251577|gb|EFU31556.1| transcription termination factor NusA [Prevotella buccae ATCC
33574]
Length = 421
Score = 286 bits (732), Expect = 6e-75, Method: Composition-based stats.
Identities = 136/414 (32%), Positives = 233/414 (56%), Gaps = 8/414 (1%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
++ K+IDR ++SV+ +S + ++G+ + V +NP+ GD ++R V
Sbjct: 13 MIDTFREFKETKNIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIYRNRVV 72
Query: 69 VEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
V + VE+ +ISL A+ +P ++G VS+ + FGR A+ + +Q + K+ E E
Sbjct: 73 VADGEVEDENKEISLTEAQKIEPDYEVGEDVSEKVDFNKFGRRAILTLRQTLASKILELE 132
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNV-IVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
D Y ++KD+VG++ISG V ++ V IVD N++ ++ + E I + R G+ V++
Sbjct: 133 HDSLYNKYKDRVGQVISGEVYQMWKREVLIVDDENNELILPKAEQIPADQYRKGETVRAV 192
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I V E P+++LSRT P F+ +L EVPEI +G++ ++ ++R PG RAK+AV S D
Sbjct: 193 ILRVDNENNNPKIILSRTSPMFLERLLEAEVPEISDGLIAIRKIARMPGDRAKVAVESFD 252
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
IDPVGACVG++GSRV +V EL +E ID++ ++ + F+ AL PA V+ + +DE+
Sbjct: 253 ERIDPVGACVGVKGSRVHGIVRELCNENIDVINYTSNVKLFIQRALSPAKVSSINIDEEN 312
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
+ EV + E++SLAIGR G N++LAS LT +TID+ E +++ + + E
Sbjct: 313 HKAEVYLQPEEVSLAIGRGGMNIKLASMLTEYTIDVFREIDENAADEDIYLEEFSD---- 368
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+D+ + + + G +++ + +EET + R E
Sbjct: 369 -EIDQWVIDAIKSIGLDTAKQVLNAPREMLIEKADLEEETVDNVLNVLRAEFEQ 421
>gi|255010119|ref|ZP_05282245.1| transcription elongation factor NusA [Bacteroides fragilis 3_1_12]
gi|313147917|ref|ZP_07810110.1| transcription elongation factor NusA [Bacteroides fragilis 3_1_12]
gi|313136684|gb|EFR54044.1| transcription elongation factor NusA [Bacteroides fragilis 3_1_12]
Length = 420
Score = 286 bits (732), Expect = 6e-75, Method: Composition-based stats.
Identities = 136/412 (33%), Positives = 238/412 (57%), Gaps = 11/412 (2%)
Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD
Sbjct: 2 AKKEETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61
Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
++R EVV E++ N QISL A+ D S ++G V+D + FGR A+ + +Q +
Sbjct: 62 EIWRNREVVADEDLTNPNMQISLTEAQQIDASYEVGEEVTDEVIFAKFGRRAILNLRQTL 121
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177
K+ E E+D Y ++ DKVG II+ V + + +++D ++ ++ + E I + R
Sbjct: 122 ASKILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA
Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++
Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKIS 301
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
+ L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E +++ + + +
Sbjct: 302 SIRLNEEERKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDENAQDEDIYLD 361
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409
+ +D + + A G + + + +EET E+
Sbjct: 362 EFRD-----EIDGWVIDAIKAIGIDTAKSVLTAPREMLIEKTDLEEETVDEV 408
>gi|297626628|ref|YP_003688391.1| Transcription termination/ antitermination factor NusA
[Propionibacterium freudenreichii subsp. shermanii
CIRM-BIA1]
gi|296922393|emb|CBL56965.1| Transcription termination/ antitermination factor NusA
[Propionibacterium freudenreichii subsp. shermanii
CIRM-BIA1]
Length = 352
Score = 286 bits (732), Expect = 7e-75, Method: Composition-based stats.
Identities = 136/350 (38%), Positives = 195/350 (55%), Gaps = 24/350 (6%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ A+ +EK I D ++ + D++ A V +N TG++S+ V
Sbjct: 5 MTALRALEHEKEIPLDYLVGTLEDALLNAYEKTEHPKPGAHVVLNRRTGEVSVM-----V 59
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
EV + +G P DFGRVA +A+QVI Q++REAE ++
Sbjct: 60 PEVNDEGE--------------SVGEY---DDTPTDFGRVAASTARQVIFQRLREAEDEQ 102
Query: 130 QYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
+Y +F G+++ G V++ I VDLG+ + ++ E + E+ + G R++ Y+
Sbjct: 103 KYGKFSAVEGDVVMGVVQQDRGSKTIRVDLGDIEAIMPLAEQVPGEDYKHGTRLRVYVVT 162
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
VR+E RGPQV++SRTHP + KLF +EVPEI G+V+VKA++R+ G R K+AV S + +
Sbjct: 163 VRKEARGPQVVVSRTHPNLVKKLFELEVPEIEQGVVEVKAIARESGHRTKIAVVSHNPDV 222
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307
GAC+G G RV+AV+ EL DEKIDI+ WS D A FV NAL PA KV +D
Sbjct: 223 SAKGACIGPMGQRVRAVMRELNDEKIDIIDWSADPAEFVANALSPAKALKVTVVDAGARA 282
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
VIVP QLSLAIGR GQN RLA++LTGW IDI + +
Sbjct: 283 ARVIVPDYQLSLAIGREGQNARLAARLTGWRIDIRPDTAPDVPPANPGRP 332
>gi|239982635|ref|ZP_04705159.1| transcription elongation factor NusA [Streptomyces albus J1074]
gi|291454476|ref|ZP_06593866.1| transcription elongation factor NusA [Streptomyces albus J1074]
gi|291357425|gb|EFE84327.1| transcription elongation factor NusA [Streptomyces albus J1074]
Length = 358
Score = 286 bits (732), Expect = 7e-75, Method: Composition-based stats.
Identities = 129/340 (37%), Positives = 195/340 (57%), Gaps = 18/340 (5%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ + EK I D+++ + ++ A G+ RV ++ ETG ++++
Sbjct: 5 MSALRGLVREKEISFDLLVEAIESALLIAYHRTEGSRRQARVRLDRETGHVTVWAK---- 60
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
E+ ++ + R+ D P DFGR+A +AKQVI+Q++R+A+ D
Sbjct: 61 EDRDDLVGAVEGTEPREFDD------------TPSDFGRIAATTAKQVILQRLRDAQDDA 108
Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
E+ + G+I++G V++ + NV+VD+G + ++ E + E G R++SY+
Sbjct: 109 TLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGEEYPHGARLRSYVVR 168
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S +
Sbjct: 169 VAKGVRGPSVTLSRTHPGLVKKLFALEVPEIADGSVEIAAIAREAGHRTKIAVRSTRSGL 228
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307
+ GAC+G G RV+ V+ EL EKIDIV WS D A V NAL PA V+KV +D
Sbjct: 229 NAKGACIGPMGGRVRNVMAELNGEKIDIVDWSDDPADMVANALSPARVSKVEVVDFAARS 288
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347
V VP QLSLAIG+ GQN RLA++LTGW IDI + E
Sbjct: 289 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEQ 328
>gi|328885406|emb|CCA58645.1| Transcription termination protein NusA [Streptomyces venezuelae
ATCC 10712]
Length = 331
Score = 286 bits (731), Expect = 7e-75, Method: Composition-based stats.
Identities = 128/345 (37%), Positives = 197/345 (57%), Gaps = 22/345 (6%)
Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70
++ +A+EK I D+++ + ++ A RVE++ TG ++++
Sbjct: 6 KLLKGLAHEKEISFDLLVEAIESALLIAYHRTPDARRHARVELDRVTGHVTVWAK----- 60
Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130
E+ + L+ ++ P DFGR+A +A+QVI Q++R+AE D
Sbjct: 61 --EDPSE---LEEGQEPK---------DFDDTPSDFGRIAASTARQVIQQRLRDAENDVT 106
Query: 131 YLEFKDKVGEIISGTVKR-VEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYD 188
+ E+ + G++++G V++ + NV+V L + ++ E + E G R+++Y+
Sbjct: 107 FGEYARREGDVVAGVVQQGKDPKNVLVKLDDKLEAILPVQEQVPGEEYSHGLRLRTYVVR 166
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S +
Sbjct: 167 VAKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEIAAIAREAGHRTKIAVRSTRSGL 226
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307
+P GAC+G GSRV+ V+ EL EKIDIV WS D A V NAL PA V+KV +D
Sbjct: 227 NPKGACIGPMGSRVRNVMAELLGEKIDIVDWSDDPAEMVANALSPARVSKVEVVDMAARS 286
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
V VP QLSLAIG+ GQN RLA++LTGW IDI + E S +
Sbjct: 287 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEPSGPQD 331
>gi|318081083|ref|ZP_07988415.1| transcription elongation factor NusA [Streptomyces sp. SA3_actF]
Length = 343
Score = 286 bits (731), Expect = 7e-75, Method: Composition-based stats.
Identities = 125/350 (35%), Positives = 194/350 (55%), Gaps = 18/350 (5%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ + EK I D ++ + ++ A + RV ++ E+G ++++ + E
Sbjct: 1 MSALRGLVREKEISFDRLVEAIESALLIAYHRTEHSHRRARVHLDRESGHVTVW-VKEEA 59
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
++ + + AR R P DFGR+A +AKQVI+Q++R+A+ D
Sbjct: 60 ADLADLG-----EDARPR----------EFDDTPSDFGRIAATTAKQVILQRLRDAQDDA 104
Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
E+ + G+I++G V++ + NV+VD+G + ++ E + E G R++SY+
Sbjct: 105 TLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGEEYTHGLRLRSYVVR 164
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S +
Sbjct: 165 VAKGMRGPSVTLSRTHPNLVKKLFSLEVPEIADGSVEIAAIAREAGHRTKIAVRSNRSGL 224
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307
+ GAC+G G RV+ V+ EL EKIDIV WS + A V +AL PA V+ V +D
Sbjct: 225 NAKGACIGPMGGRVRNVMAELNGEKIDIVDWSDNPADLVAHALSPARVSHVEVVDLATRS 284
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
V VP QLSLAIG+ GQN RLA++LTGW IDI + E +
Sbjct: 285 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTETTDEDGNATEN 334
>gi|332883100|gb|EGK03384.1| transcription termination factor NusA [Dysgonomonas mossii DSM
22836]
Length = 418
Score = 286 bits (731), Expect = 8e-75, Method: Composition-based stats.
Identities = 138/422 (32%), Positives = 238/422 (56%), Gaps = 12/422 (2%)
Query: 6 RLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62
+ E + + D + E KSIDR ++SV+ DS + L+G+ + V INP+ GD+ +
Sbjct: 3 KKETINLIDTFSEFKELKSIDRMTMISVLEDSFRNVIAKLFGSNDNYDVIINPDKGDLEI 62
Query: 63 FRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
+R +VE+ +E+ +I+L A+ D ++G V+D + DFGR A+ + +Q +
Sbjct: 63 WRNRVIVEDDQLEDDNTEIALSEAKKIDEDFEVGEEVTDEVFFEDFGRRAILNLRQTLTS 122
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPG 179
K+ E +++ Y +K+K+GEI+SG V ++ +++ D + ++ + E I + R G
Sbjct: 123 KILELQKESLYNRYKEKIGEIVSGEVYQIWKKEILLLDDEKEELLLPKTEQIPSDFFRKG 182
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
+ V++ + V + P+++LSRT P F+ +L +EVPEI +G++ +K ++R PG RAK+
Sbjct: 183 EHVRAVVERVDNKNNNPKIILSRTSPTFLERLLELEVPEINDGLITIKNIARIPGERAKV 242
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV S D IDPVGACVGM+GSR+ +V ELR+E IDI+ ++ + ++ AL PA +T V
Sbjct: 243 AVESYDERIDPVGACVGMKGSRIHGIVRELRNENIDIINYTSNMNLYIQRALSPAKITSV 302
Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
++E+ R EV++ E++SLAIG+ G N++LAS LTG+TID+ + +D +E
Sbjct: 303 KINEEEKRAEVLLRPEEVSLAIGKGGFNIKLASMLTGYTIDVYRDIDDFDEEDIYLDEFR 362
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+D + L G + + ++ +E T EI R +
Sbjct: 363 D------EIDGWVIDQLKKIGCVTAKNVLATDRDKLIQEADLEENTVDEILNILRAEFDD 416
Query: 420 ID 421
Sbjct: 417 EA 418
>gi|300871262|ref|YP_003786135.1| putative transcription elongation factor NusA [Brachyspira
pilosicoli 95/1000]
gi|300688963|gb|ADK31634.1| putative transcription elongation factor, NusA [Brachyspira
pilosicoli 95/1000]
Length = 495
Score = 286 bits (731), Expect = 8e-75, Method: Composition-based stats.
Identities = 138/446 (30%), Positives = 237/446 (53%), Gaps = 34/446 (7%)
Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV 72
++ EK I D++ V+ + A + YG + + + + +++R + VVEEV
Sbjct: 9 LQMLSEEKDISIDLLKEVVESVMILALKKKYGDNVNFHINFD-NNNNPTVYRGVNVVEEV 67
Query: 73 ENYTCQISLKVARDRDPSIDIGGVVSDPLPPM-DFGRVAVQSAKQVIIQKVREAERDRQY 131
++ +ISL+ A+ D I++G V + + DFGR+ +AK QK+ E E++ Y
Sbjct: 68 KDDRKEISLEEAKKLDSDINLGDEVLILVDHVGDFGRIESTAAKTTFFQKISELEKNIIY 127
Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRR 191
EFK + ++++G +R GN+ V+LG ++GV+ + + RE+ GDR+++YIY V
Sbjct: 128 NEFKRRENQLVNGYFQRENRGNIYVNLGKTEGVLLKKDLSPREHYAAGDRIRAYIYKVEN 187
Query: 192 EQRGPQ-VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250
++ G + L+RT F+ KLF +E+PEI +G +++K V R PG + K+AV S+ +DP
Sbjct: 188 DRSGHPTIYLTRTKADFIKKLFELEIPEIADGTIEIKNVVRQPGLKIKIAVVSNKPEVDP 247
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIE 309
+GAC+G +G R+QA++ E+ EKID+V WS D ++ A+ PA T++++ D +
Sbjct: 248 IGACIGQKGIRIQAIIKEIEGEKIDVVKWSKDIREYIAEAIAPAKPTRIIITDPEKKEAM 307
Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN------------------- 350
+I+P +QLSLA+GR G NV+LASQLTG+T D+ TE + N
Sbjct: 308 IIIPDDQLSLALGRSGYNVKLASQLTGYTFDLKTETDIKENPELLKDIVPLNQIFAENVE 367
Query: 351 -----------RQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIE 399
+ ++D+ + L+ G +EEL + + I
Sbjct: 368 ENVENEEAIADTEDTQEAAVSNLYSLTDIDKDVIKTLIDGGINSIEELYGMDANTIIEKT 427
Query: 400 GFDEETAVEIQGRAREYLEGIDITLQ 425
DEET I +E + ++ T +
Sbjct: 428 NLDEETVNNIINILKEVVSVVEETDE 453
>gi|302522224|ref|ZP_07274566.1| transcription termination factor NusA [Streptomyces sp. SPB78]
gi|302431119|gb|EFL02935.1| transcription termination factor NusA [Streptomyces sp. SPB78]
Length = 371
Score = 286 bits (731), Expect = 8e-75, Method: Composition-based stats.
Identities = 129/371 (34%), Positives = 198/371 (53%), Gaps = 18/371 (4%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ + EK I D ++ + ++ A + RV ++ E+G ++++ V
Sbjct: 5 MSALRGLVREKEISFDRLVEAIESALLIAYHRTEHSHRRARVHLDRESGHVTVW-----V 59
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
+E E + + AR R P DFGR+A +AKQVI+Q++R+A+ D
Sbjct: 60 KEEEADLADLG-EDARPR----------EFDDTPSDFGRIAATTAKQVILQRLRDAQDDA 108
Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
E+ + G+I++G V++ + NV+VD+G + ++ E + E G R++SY+
Sbjct: 109 TLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGEEYTHGLRLRSYVVR 168
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S +
Sbjct: 169 VAKGMRGPSVTLSRTHPNLVKKLFSLEVPEIADGSVEIAAIAREAGHRTKIAVRSNRSGL 228
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307
+ GAC+G G RV+ V+ EL EKIDIV WS + A V +AL PA V+ V +D
Sbjct: 229 NAKGACIGPMGGRVRNVMAELNGEKIDIVDWSDNPADLVAHALSPARVSHVEVVDLATRS 288
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
V VP QLSLAIG+ GQN RLA++LTGW IDI + E + +
Sbjct: 289 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTETTDEDGNATGNGNGNEDRDGR 348
Query: 368 VDEIIAHLLVA 378
+VA
Sbjct: 349 RGGGRESGIVA 359
>gi|325280551|ref|YP_004253093.1| NusA antitermination factor [Odoribacter splanchnicus DSM 20712]
gi|324312360|gb|ADY32913.1| NusA antitermination factor [Odoribacter splanchnicus DSM 20712]
Length = 412
Score = 286 bits (731), Expect = 8e-75, Method: Composition-based stats.
Identities = 138/418 (33%), Positives = 234/418 (55%), Gaps = 12/418 (2%)
Query: 7 LELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
+E + + D+ A E K+IDR ++ V+ D + YGT + + IN + GD+ ++
Sbjct: 1 MENINLIDSFAEFKEFKNIDRATLMRVLEDIFRNMLLKRYGTDENFDIIINIDKGDLEIW 60
Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
R VVE+ +EN +I+L A+ D ++G V+D + DFGR +V + +Q + +
Sbjct: 61 RNRTVVEDDKLENPNSEITLTEAKKIDEDYELGEEVTDEVKFKDFGRRSVLALRQNLSAR 120
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
+ E E+D Y ++KDKVG+II G V + + +++D ++ ++ + E I + + GD
Sbjct: 121 ILELEKDNVYNKYKDKVGQIILGEVYQVWKKEMLVLDDEGNELILPKQEQIPTDFFKKGD 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
+K+ + V P ++LSRT P F+ +LF EVPEI++G++ +K V R PG RAK+A
Sbjct: 181 SIKAVVIRVEMRNSNPYIILSRTSPVFLERLFENEVPEIFDGLITIKNVVRVPGERAKVA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S D IDPVGACVGM+GSR+ +V ELR+E ID++ ++ + ++ AL PA + +
Sbjct: 241 VESYDDRIDPVGACVGMKGSRIHGIVRELRNENIDVINYTNNLQLYITRALNPAKIKNIE 300
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DE + V + E++SLAIG+ G N++LASQLTG+ ID+ E + + + +E
Sbjct: 301 IDEAHKKANVYLDPEEVSLAIGKGGLNIKLASQLTGYDIDVYRELDQAQEEDVNLDEFAD 360
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
++ + L G + + + SE+ S + ET E+ + E
Sbjct: 361 ------EIEGWVIDELKRVGCDTAKSVLELSESELESRTDLEIETIREVLNILKAEFE 412
>gi|260172453|ref|ZP_05758865.1| transcription elongation factor NusA [Bacteroides sp. D2]
gi|315920747|ref|ZP_07916987.1| transcription elongation factor NusA [Bacteroides sp. D2]
gi|313694622|gb|EFS31457.1| transcription elongation factor NusA [Bacteroides sp. D2]
Length = 427
Score = 286 bits (731), Expect = 8e-75, Method: Composition-based stats.
Identities = 139/430 (32%), Positives = 245/430 (56%), Gaps = 11/430 (2%)
Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD
Sbjct: 2 AKKEETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61
Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
++R EVV E++ N QISL A+ D S + G V+D + FGR A+ + +Q +
Sbjct: 62 EIWRNREVVADEDLTNPNMQISLSEAQKIDASYEEGEEVTDEVIFAKFGRRAILNLRQTL 121
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177
K+ E E+D Y ++ DKVG II+ V + + +++D ++ ++ + E I + R
Sbjct: 122 ASKILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA
Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++
Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKIS 301
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
+ L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E ++++ + + +
Sbjct: 302 SIRLNEEEKKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDENVADEDIYLD 361
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
+ +D + + A G + + + +EET E+ +
Sbjct: 362 EFRD-----EIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEVIRILKSEF 416
Query: 418 EGIDITLQKK 427
E D +++ K
Sbjct: 417 EEEDPSIENK 426
>gi|320008230|gb|ADW03080.1| NusA antitermination factor [Streptomyces flavogriseus ATCC 33331]
Length = 346
Score = 286 bits (731), Expect = 9e-75, Method: Composition-based stats.
Identities = 128/344 (37%), Positives = 198/344 (57%), Gaps = 22/344 (6%)
Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70
++ +A +K I DV++ + ++ A G+ RVE++ +G ++++
Sbjct: 6 KLLKGLAQDKEIPFDVLVGAIESALLIAYHRTEGSHRRARVELD-ASGHVTVWAK----- 59
Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130
++ L+ ++ P FGR+A +AKQVI+Q++R+AE DR
Sbjct: 60 --DDPAE---LEEGQEPK---------EFDDTPSGFGRIAATTAKQVILQRLRDAEDDRT 105
Query: 131 YLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDV 189
+ E+ G++++G V++ + NV+VD+G + ++ E + E G R+++Y+ V
Sbjct: 106 FGEYAGHEGDVVTGLVQQGKDPKNVLVDIGKLEAILPVQEQVPGEEYTHGLRLRTYVVRV 165
Query: 190 RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSID 249
+ RGP V LSRTHP + KLF +EVPEI +G V ++A++R+ G R K+AV S+ + ++
Sbjct: 166 AKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVVIEAIAREAGHRTKIAVRSTRAGLN 225
Query: 250 PVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRI 308
P GAC+G GSRV+ V+ EL EKIDIV WS D A V NAL PA V+KV +D
Sbjct: 226 PKGACIGPMGSRVRNVMAELHGEKIDIVDWSDDPAEMVANALSPARVSKVEVVDLGTRSA 285
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
V VP QLSLAIG+ GQN RLA++LTGW IDI + E R
Sbjct: 286 RVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTETEAERD 329
>gi|307565711|ref|ZP_07628180.1| transcription termination factor NusA [Prevotella amnii CRIS 21A-A]
gi|307345537|gb|EFN90905.1| transcription termination factor NusA [Prevotella amnii CRIS 21A-A]
Length = 421
Score = 285 bits (730), Expect = 9e-75, Method: Composition-based stats.
Identities = 138/395 (34%), Positives = 232/395 (58%), Gaps = 8/395 (2%)
Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV--EEVENYTC 77
KSIDR ++SV+ +S + ++G+ + V +NP+ GD ++R VV +E+EN
Sbjct: 24 KSIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIYRNRVVVADDELENENK 83
Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137
QISL AR +P ++G VS+ + FGR A+ + +Q + K+ E E D Y ++K++
Sbjct: 84 QISLTDARKLEPDFEVGEDVSEKIDFNKFGRRAILNLRQTLASKILELEHDSLYNKYKNR 143
Query: 138 VGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196
VG+I+SG V + + ++VD N++ ++ + E I R+N R G+ +++ I+ V + P
Sbjct: 144 VGQIVSGEVYQTWKREVLLVDEDNNEMILPKGEQIPRDNYRKGETIRAVIHRVTNDNNNP 203
Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256
+++LSRT P+F+ +L EVPEI +G++ +K V+R PG RAK+AV S D IDPVGACVG
Sbjct: 204 KIILSRTAPEFLERLLEAEVPEINDGLIAIKKVARMPGERAKIAVESYDERIDPVGACVG 263
Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316
+RGSRV +V EL +E ID++ W+ ++ F+ AL PA V+ + +DE+ + EV + E+
Sbjct: 264 VRGSRVHGIVRELCNENIDVITWTANTKLFIQRALAPAKVSSLTIDEETKKAEVYLQPEE 323
Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376
+SLAIGR G N++LAS LT +TID+ E +++ + + +D+ + +
Sbjct: 324 VSLAIGRNGLNIKLASMLTDYTIDVFRELDENETEDDIYLDEFAD-----EIDQWVIDAI 378
Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411
G ++ + +EET +
Sbjct: 379 KGIGMETARQVLNAPREMLIEKADLEEETVDNVLN 413
>gi|163839410|ref|YP_001623815.1| transcription elongation factor [Renibacterium salmoninarum ATCC
33209]
gi|162952886|gb|ABY22401.1| transcription elongation factor [Renibacterium salmoninarum ATCC
33209]
Length = 330
Score = 285 bits (730), Expect = 9e-75, Method: Composition-based stats.
Identities = 124/341 (36%), Positives = 195/341 (57%), Gaps = 24/341 (7%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ + E+ I + ++ + ++ A R G R EI+ ++G ++++
Sbjct: 5 MSALRLLEREREIPLEKLIPTIEQALLVAYRKSPGAFEQARAEIDRKSGHVTIWA----- 59
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
+I D +G P FGR+A +A+Q+I+Q++R+ E +
Sbjct: 60 -------TEI-------DDDGAPVGEF---EDTPAGFGRIAASTARQIILQRLRDVEDEN 102
Query: 130 QYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
EF+ K GE++SG +++ N++ V+LG +GV+ E E G R+++++ D
Sbjct: 103 VLGEFRGKEGELVSGQIQQGHNPNMVQVNLGTVEGVLPPTEQSPGERYPHGSRIRAFVVD 162
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V R Q+GP + LSR+HP + KLF +EVPEI + V++ A++R+ G R K+AV + I
Sbjct: 163 VHRGQKGPSITLSRSHPGLVRKLFELEVPEIADKSVEIVALAREAGHRTKIAVKAHRPGI 222
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307
+ GAC+G GSRV+AV+TEL DEKIDIV +S D ATF+ ++L P+ V V + DE
Sbjct: 223 NAKGACIGEMGSRVRAVMTELNDEKIDIVDFSEDPATFIASSLSPSRVNSVTITDEATRS 282
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
VIVP QLSLAIG+ GQN RLA++LTGW IDII++
Sbjct: 283 ARVIVPDYQLSLAIGKEGQNARLAAKLTGWRIDIISDAVAE 323
>gi|150003921|ref|YP_001298665.1| transcription elongation factor NusA [Bacteroides vulgatus ATCC
8482]
gi|212692747|ref|ZP_03300875.1| hypothetical protein BACDOR_02245 [Bacteroides dorei DSM 17855]
gi|237709443|ref|ZP_04539924.1| transcription elongation factor NusA [Bacteroides sp. 9_1_42FAA]
gi|237724957|ref|ZP_04555438.1| transcription elongation factor NusA [Bacteroides sp. D4]
gi|254880838|ref|ZP_05253548.1| transcription elongation factor NusA [Bacteroides sp. 4_3_47FAA]
gi|265754642|ref|ZP_06089694.1| transcription termination factor NusA [Bacteroides sp. 3_1_33FAA]
gi|294775077|ref|ZP_06740606.1| transcription termination factor NusA [Bacteroides vulgatus PC510]
gi|319639848|ref|ZP_07994577.1| hypothetical protein HMPREF9011_00174 [Bacteroides sp. 3_1_40A]
gi|149932345|gb|ABR39043.1| putative nitrogen utilization substance protein [Bacteroides
vulgatus ATCC 8482]
gi|212664683|gb|EEB25255.1| hypothetical protein BACDOR_02245 [Bacteroides dorei DSM 17855]
gi|229436695|gb|EEO46772.1| transcription elongation factor NusA [Bacteroides dorei 5_1_36/D4]
gi|229456499|gb|EEO62220.1| transcription elongation factor NusA [Bacteroides sp. 9_1_42FAA]
gi|254833631|gb|EET13940.1| transcription elongation factor NusA [Bacteroides sp. 4_3_47FAA]
gi|263234756|gb|EEZ20324.1| transcription termination factor NusA [Bacteroides sp. 3_1_33FAA]
gi|294451121|gb|EFG19592.1| transcription termination factor NusA [Bacteroides vulgatus PC510]
gi|317388512|gb|EFV69362.1| hypothetical protein HMPREF9011_00174 [Bacteroides sp. 3_1_40A]
Length = 418
Score = 285 bits (730), Expect = 9e-75, Method: Composition-based stats.
Identities = 137/422 (32%), Positives = 238/422 (56%), Gaps = 11/422 (2%)
Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD
Sbjct: 2 AKKEETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61
Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
++R EVV E++ N QISL A+ D S ++G V+D + FGR A+ + +Q +
Sbjct: 62 EIWRNREVVADEDLTNPNMQISLTEAQKIDASYEVGEEVTDEVIFAKFGRRAILNLRQTL 121
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177
K+ E E+D Y ++ D+VG +IS V + + +++D ++ ++ + E I + R
Sbjct: 122 ASKILELEKDSLYNKYIDRVGTVISAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA
Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++
Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKIS 301
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
+VL E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E ++S + + +
Sbjct: 302 SIVLHEEEKKAEVYLKPEEVSLAIGKGGMNIKLASMLTEYTIDVYRELDESAMDEDIYLD 361
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
+ +DE + + G + + + +E T ++ R
Sbjct: 362 EFKD-----EIDEWVITAIKNIGLDTAKAVLNAPREMLIEKADLEENTVDDVLRVLRAEF 416
Query: 418 EG 419
E
Sbjct: 417 EE 418
>gi|83815918|ref|YP_445895.1| transcription elongation factor NusA [Salinibacter ruber DSM 13855]
gi|83757312|gb|ABC45425.1| N utilization substance protein A [Salinibacter ruber DSM 13855]
Length = 546
Score = 285 bits (730), Expect = 9e-75, Method: Composition-based stats.
Identities = 144/427 (33%), Positives = 230/427 (53%), Gaps = 12/427 (2%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
+L+ +A K +DRD + ++ D + R YG+ + NP+ GDI + + E
Sbjct: 5 DLISSFGEIARSKDMDRDTLQIIVEDVFRAMLRKRYGSDEAFEIIFNPKQGDIQILHIQE 64
Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV EVE+ +I A+ D +G V+ L +FGR AV +A+Q Q++R+
Sbjct: 65 VVGDWEVEDPVTEIKESEAKKIDDGFAVGDEVAGGLDVSEFGRRAVMTARQTFRQRIRDI 124
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
E+++ Y E+ + +G+I+ G + +V ++ +++ V+ RDE I ++ R G+ +++
Sbjct: 125 EKEQVYQEYTELIGDIVVGEIYQVRRHETLLMHEDTELVLPRDEQIPGDHYRKGNMLRTV 184
Query: 186 IYDVRRE-QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ +VRR+ PQV++SRT P FM +LF +EVPE+++GIV++K V+R PG RAK+AV S
Sbjct: 185 VKEVRRDAGSDPQVVVSRTSPVFMERLFEVEVPEVHDGIVEIKKVARIPGDRAKVAVESH 244
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--D 302
D +DPVGACVG++G R+ AVV EL DE ID++ WS D + AL PA T V L D
Sbjct: 245 DEKVDPVGACVGVKGVRINAVVRELSDENIDVMQWSDDPQELIARALSPAEPTNVSLNQD 304
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
ED R V VP +++S AIG+RG N++LASQLTG+ ID+ E
Sbjct: 305 EDPPRARVEVPADEVSQAIGKRGVNIKLASQLTGYEIDVYREIPADEED-------IDIE 357
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
+ E L G + + + +A D +TA ++ E
Sbjct: 358 QFGDELTEETIGKLKRIGCDTGKAVLELSADALARRADLDRDTAKQVLEIIETEFEKGPG 417
Query: 423 TLQKKIR 429
++ +
Sbjct: 418 IIESIRQ 424
>gi|29348812|ref|NP_812315.1| transcription elongation factor NusA [Bacteroides thetaiotaomicron
VPI-5482]
gi|253568843|ref|ZP_04846253.1| transcription elongation factor NusA [Bacteroides sp. 1_1_6]
gi|298387892|ref|ZP_06997441.1| transcription termination factor NusA [Bacteroides sp. 1_1_14]
gi|29340718|gb|AAO78509.1| putative nitrogen utilization substance protein [Bacteroides
thetaiotaomicron VPI-5482]
gi|251840862|gb|EES68943.1| transcription elongation factor NusA [Bacteroides sp. 1_1_6]
gi|298259299|gb|EFI02174.1| transcription termination factor NusA [Bacteroides sp. 1_1_14]
Length = 439
Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats.
Identities = 136/413 (32%), Positives = 238/413 (57%), Gaps = 11/413 (2%)
Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD
Sbjct: 2 AKKEETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61
Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
++R EVV E++ N QISL A+ D S + G V+D + FGR A+ + +Q +
Sbjct: 62 EIWRNREVVADEDLTNPNMQISLTEAQKIDASYEEGEEVTDEVIFAKFGRRAILNLRQTL 121
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177
K+ E E+D Y ++ DKVG II+ V + + +++D ++ ++ + E I + R
Sbjct: 122 ASKILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA
Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++
Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKIS 301
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
+ L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E ++++ + + +
Sbjct: 302 SIRLNEEEKKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDENVADEDIYLD 361
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410
+ +D + + A G + + + +EET E+
Sbjct: 362 EFRD-----EIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEVI 409
>gi|188996513|ref|YP_001930764.1| NusA antitermination factor [Sulfurihydrogenibium sp. YO3AOP1]
gi|188931580|gb|ACD66210.1| NusA antitermination factor [Sulfurihydrogenibium sp. YO3AOP1]
Length = 371
Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats.
Identities = 146/365 (40%), Positives = 220/365 (60%), Gaps = 19/365 (5%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG--TMSDIRVEINPETGDISLFRLL 66
L + + ++ EK+I DV+ + D I A + + +++ + E ++ +
Sbjct: 5 LKNVIETISREKNIPEDVIEKALRDGILTAVKKEFKLREKDAVKIIFDKEKDELKVLIKK 64
Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
+V VE+ T +I+L+ A++ DP+ D G V PL D GR+A+ AK+VI +KV + E
Sbjct: 65 KVTPFVEDETKEIALEEAKNYDPNADYGKYVYVPLNLEDIGRIALSVAKEVIAKKVSKVE 124
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
RD Y EFKD G+II+GTV+R E ++IVDLG + ++ ++E I +E + GDR+++ +
Sbjct: 125 RDILYREFKDYEGKIITGTVRRFEGDDIIVDLGRIEAILPKEEQIPKEKYKIGDRIRALV 184
Query: 187 YDVRREQRGPQVL-----------------LSRTHPQFMVKLFHMEVPEIYNGIVQVKAV 229
V +E P + LSRTHP F+ KL +EVPEI G ++VKAV
Sbjct: 185 LKVSKENTYPIIEKGKLKRVIKVFEPPMVILSRTHPNFLKKLLEIEVPEIAEGEIEVKAV 244
Query: 230 SRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN 289
+R+PG RAK+AV+S D +IDPVG VG++GSR+ V +EL EKID++ W D A F+I
Sbjct: 245 AREPGERAKVAVYSKDKNIDPVGVVVGLKGSRILNVSSELSGEKIDVIEWDEDPAKFIIR 304
Query: 290 ALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
AL PA K L RIE+ VP+E+LSLAIG+ G N +LA +LTGW IDI++EE+
Sbjct: 305 ALAPARAKKYRLLPREKRIEIAVPREELSLAIGKNGINAKLAHKLTGWHIDILSEEDFER 364
Query: 350 NRQKD 354
++
Sbjct: 365 IQKLP 369
>gi|317504200|ref|ZP_07962194.1| transcription elongation factor NusA [Prevotella salivae DSM 15606]
gi|315664689|gb|EFV04362.1| transcription elongation factor NusA [Prevotella salivae DSM 15606]
Length = 421
Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats.
Identities = 134/421 (31%), Positives = 233/421 (55%), Gaps = 8/421 (1%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
+ + + L+ K+IDR ++SV+ +S + ++G+ + V +NP+ GD
Sbjct: 6 IEEDSISLIDTFREFKETKNIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFE 65
Query: 62 LFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119
++R VV + VE+ Q++L AR +P ++G VS+ + FGR A+ + +Q +
Sbjct: 66 IYRNRIVVADGEVEDENKQVALTEARKIEPDYEVGEEVSEQVNFAKFGRRAILNLRQTLA 125
Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRP 178
K+ E E D Y ++KD+VG+IISG V + + ++VD N++ ++ + E I + R
Sbjct: 126 SKILELEHDTLYNKYKDRVGQIISGEVYQIWKREVLVVDDENNELILPKSEQIPADVYRK 185
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
G+ V++ I V E P+++LSRT P F+ +L EVPEI +G++ ++ ++R PG RAK
Sbjct: 186 GETVRAVILRVDNENNNPKIILSRTSPLFLERLLEAEVPEINDGLIAIRKIARMPGERAK 245
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV S D IDPVGACVG++GSRV +V EL +E +D+V ++ + F+ AL PA V+
Sbjct: 246 IAVESFDDRIDPVGACVGVKGSRVHGIVRELCNENLDVVNYTSNINLFIQRALSPARVSS 305
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
+ +D++ + EV + E++SLAIGR G N++LAS LT +TID+ E + + + +
Sbjct: 306 INIDQENHKAEVYLQPEEVSLAIGRGGLNIKLASMLTEFTIDVFREVPEGEADEDIYLDE 365
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
+D+ + + + G + + + +EET + R E
Sbjct: 366 FSD-----EIDQWVIEAIKSIGLDTAKAVLNAPREMLVEKADLEEETVDHVINVLRAEFE 420
Query: 419 G 419
Sbjct: 421 Q 421
>gi|304383857|ref|ZP_07366314.1| transcription termination factor NusA [Prevotella marshii DSM
16973]
gi|304334935|gb|EFM01208.1| transcription termination factor NusA [Prevotella marshii DSM
16973]
Length = 420
Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats.
Identities = 141/393 (35%), Positives = 227/393 (57%), Gaps = 8/393 (2%)
Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77
K+IDR ++SV+ +S + L+G+ + V +NP+ GD ++R VV + V++
Sbjct: 24 KNIDRTTLVSVLEESFRNVIAKLFGSDENFDVIVNPDKGDFEIYRNRVVVADGEVQDENK 83
Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137
+ISL A+ + +IG VS+P+ FGR AV + +Q + KV E E D Y ++KD+
Sbjct: 84 EISLSEAQKIEKDYEIGEEVSEPVDFAKFGRRAVLNLRQTLASKVLELEHDSLYNKYKDR 143
Query: 138 VGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196
VG+IISG V + + +IVD N++ ++ + E I + R G+ +++ I V E P
Sbjct: 144 VGQIISGEVYQVWKREVLIVDDENNELILPKSEQIPADQYRKGETIRTVILRVDNENNNP 203
Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256
+++LSRT P F+ +L EVPEI +G++ V+ ++R PG RAK+AV S D IDPVGACVG
Sbjct: 204 KIILSRTSPMFLQRLLEAEVPEIGDGLITVRKIARIPGERAKVAVESYDERIDPVGACVG 263
Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316
+RGSRV +V EL +E ID++ ++ + F+ AL PA V+ + +DE+ + EV + E+
Sbjct: 264 VRGSRVHGIVYELCNENIDVINYTSNVKLFIQRALSPAKVSSINIDEENRKAEVFLKPEE 323
Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376
+SLAIGR G N++LAS LT +TID+ E ED + + + +D+ I +
Sbjct: 324 VSLAIGRSGMNIKLASMLTEYTIDVFREIEDGDIDEDIYLDEFSD-----EIDKWIIDSI 378
Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEI 409
A G + + + +EET +
Sbjct: 379 KAIGLDTAKAVINAPREMLVEKADLEEETVDNV 411
>gi|298480547|ref|ZP_06998744.1| transcription termination factor NusA [Bacteroides sp. D22]
gi|295086245|emb|CBK67768.1| transcription termination factor NusA [Bacteroides xylanisolvens
XB1A]
gi|298273368|gb|EFI14932.1| transcription termination factor NusA [Bacteroides sp. D22]
Length = 426
Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats.
Identities = 137/430 (31%), Positives = 241/430 (56%), Gaps = 11/430 (2%)
Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD
Sbjct: 2 AKKEETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61
Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
++R EVV E++ N QISL A+ D S + G V+D + FGR A+ + +Q +
Sbjct: 62 EIWRNREVVADEDLTNPNMQISLSEAQKIDASYEEGEEVTDEVIFAKFGRRAILNLRQTL 121
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177
K+ E E+D Y ++ DKVG II+ V + + +++D ++ ++ + E I + R
Sbjct: 122 ASKILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA
Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++
Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKIS 301
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
+ L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E ++++ + + +
Sbjct: 302 SIRLNEEEKKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDENVADEDIYLD 361
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
+ +D + + A G + + + +EET E+ +
Sbjct: 362 EFRD-----EIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEVIRILKSEF 416
Query: 418 EGIDITLQKK 427
E +
Sbjct: 417 EEEGENSVEN 426
>gi|288928619|ref|ZP_06422465.1| transcription termination factor NusA [Prevotella sp. oral taxon
317 str. F0108]
gi|288329603|gb|EFC68188.1| transcription termination factor NusA [Prevotella sp. oral taxon
317 str. F0108]
Length = 422
Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats.
Identities = 140/427 (32%), Positives = 239/427 (55%), Gaps = 14/427 (3%)
Query: 1 MVSANRLE-LLQIADAVAYE----KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINP 55
MV+ + E +L + D E K+IDR ++SV+ +S + ++G+ + V +NP
Sbjct: 1 MVARKKDENILSMVDTF-KEFKDTKNIDRMTLVSVLEESFRNVLARIFGSDENFDVIVNP 59
Query: 56 ETGDISLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQS 113
+ GD ++R VV + VE+ QI+L A+ +P ++G V++ + FGR A+ +
Sbjct: 60 DKGDFEIYRNRMVVADGEVEDENKQIALAEAQKIEPDYEVGEEVTERVDFAKFGRRAILT 119
Query: 114 AKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETIS 172
+Q + K+ E E D Y ++KD+VG++I+G V + + +IVD N++ ++ + E I
Sbjct: 120 LRQTLASKILELEHDSLYNKYKDRVGQVIAGEVYQVWKREVLIVDDENNELILPKSEQIP 179
Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRD 232
+ R G+ +++ I V E P+++LSRT P F+ +L EVPEI +G++ +K ++R
Sbjct: 180 ADQYRKGETIRAVILRVDNENNNPKIILSRTSPMFLERLLEAEVPEINDGLISIKRIARM 239
Query: 233 PGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALR 292
PG RAK+AV S D IDPVGACVG+RGSRV +V EL +E ID++ ++ ++ F+ AL
Sbjct: 240 PGERAKIAVESYDERIDPVGACVGVRGSRVHGIVRELCNENIDVINYTANTKLFIQRALS 299
Query: 293 PAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
PA V+ + +DE+ + EV + E++SLAIGR G N++LAS LT +TID+ E + +
Sbjct: 300 PAQVSSINIDEETRKAEVFLRPEEVSLAIGRGGLNIKLASMLTEYTIDVFREVAEGEADE 359
Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412
+ + VD+ + + + G + + + +EET +
Sbjct: 360 DIYLDEFSD-----EVDQWVIDAIKSIGLDTAKAVLNAPREMLVEKADLEEETVDNLLRV 414
Query: 413 AREYLEG 419
R E
Sbjct: 415 LRAEFEQ 421
>gi|153809150|ref|ZP_01961818.1| hypothetical protein BACCAC_03460 [Bacteroides caccae ATCC 43185]
gi|149128126|gb|EDM19346.1| hypothetical protein BACCAC_03460 [Bacteroides caccae ATCC 43185]
Length = 430
Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats.
Identities = 135/413 (32%), Positives = 238/413 (57%), Gaps = 11/413 (2%)
Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD
Sbjct: 2 AKKEETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61
Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
++R EVV E++ N QI+L A+ D S + G V+D + FGR A+ + +Q +
Sbjct: 62 EIWRNREVVADEDLTNPNMQIALSEAQKIDASYEEGEEVTDEVIFAKFGRRAILNLRQTL 121
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177
K+ E E+D Y ++ DKVG II+ V + + +++D ++ ++ + E I + R
Sbjct: 122 ASKILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA
Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++
Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKIS 301
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
+ L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E ++++ + + +
Sbjct: 302 SIRLNEEEKKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDENVADEDIYLD 361
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410
+ +D + + A G + + + +EET E+
Sbjct: 362 EFRD-----EIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEVI 409
>gi|288925326|ref|ZP_06419260.1| transcription termination factor NusA [Prevotella buccae D17]
gi|288337797|gb|EFC76149.1| transcription termination factor NusA [Prevotella buccae D17]
Length = 421
Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats.
Identities = 135/414 (32%), Positives = 232/414 (56%), Gaps = 8/414 (1%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
++ K+IDR ++SV+ +S + ++G+ + V +NP+ GD ++R V
Sbjct: 13 MIDTFREFKETKNIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIYRNRVV 72
Query: 69 VEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
V + VE+ +I L A+ +P ++G VS+ + FGR A+ + +Q + K+ E E
Sbjct: 73 VADGEVEDENKEICLTEAQKIEPDYEVGEDVSEKVDFNKFGRRAILTLRQTLASKILELE 132
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNV-IVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
D Y ++KD+VG++ISG V ++ V IVD N++ ++ + E I + R G+ V++
Sbjct: 133 HDSLYNKYKDRVGQVISGEVYQMWKREVLIVDDENNELILPKAEQIPADQYRKGETVRAV 192
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I V E P+++LSRT P F+ +L EVPEI +G++ ++ ++R PG RAK+AV S D
Sbjct: 193 ILRVDNENNNPKIILSRTSPMFLERLLEAEVPEISDGLIAIRKIARMPGDRAKVAVESFD 252
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
IDPVGACVG++GSRV +V EL +E ID++ ++ + F+ AL PA V+ + +DE+
Sbjct: 253 ERIDPVGACVGVKGSRVHGIVRELCNENIDVINYTSNVKLFIQRALSPAKVSSINIDEEN 312
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
+ EV + E++SLAIGR G N++LAS LT +TID+ E +++ + + E
Sbjct: 313 HKAEVYLQPEEVSLAIGRGGMNIKLASMLTEYTIDVFREIDENAADEDIYLEEFSD---- 368
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+D+ + + + G +++ + +EET + R E
Sbjct: 369 -EIDQWVIDAIKSIGLDTAKQVLNAPREMLIEKADLEEETVDNVLNVLRAEFEQ 421
>gi|302344943|ref|YP_003813296.1| transcription termination factor NusA [Prevotella melaninogenica
ATCC 25845]
gi|302149887|gb|ADK96149.1| transcription termination factor NusA [Prevotella melaninogenica
ATCC 25845]
Length = 409
Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats.
Identities = 137/403 (33%), Positives = 230/403 (57%), Gaps = 8/403 (1%)
Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77
KSIDR ++SV+ +S + ++G+ + V +NP+ GD + R VV + VE+
Sbjct: 12 KSIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIHRNRVVVADGEVEDENK 71
Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137
+ISL AR + ++G VS+ + FGR A+ + +Q + K+ E E D Y ++KD+
Sbjct: 72 EISLTDARKIEADYEVGEDVSEEVDFNKFGRRAILNLRQTLASKILELEHDSLYNKYKDR 131
Query: 138 VGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196
VG+IISG V + + ++VD N++ ++ + E I R+ R G+ V++ I+ V E P
Sbjct: 132 VGQIISGEVYQTWKREVLLVDEENNELILPKGEQIPRDQYRKGETVRAVIHRVDNENNNP 191
Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256
+++LSRT P+F+ +L EVPEI +G++ ++ ++R PG RAK+AV S D IDPVGACVG
Sbjct: 192 KIILSRTAPEFLERLLEAEVPEINDGLIAIRKIARMPGERAKIAVESFDERIDPVGACVG 251
Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316
+RGSRV +V EL +E +D++ W+ ++ F+ AL PA V+ + +DE+ + EV + E+
Sbjct: 252 VRGSRVHGIVRELCNENLDVINWTANTKLFIQRALAPAKVSSLTIDEENKKAEVYLQPEE 311
Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376
+SLAIGR G N++LAS LTG+TID+ E ++ + + + +D+ + +
Sbjct: 312 VSLAIGRGGMNIKLASMLTGYTIDVFRELDEQNAEEDIYLDEFSD-----EIDQWVIDAI 366
Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
G ++ + + ET + R E
Sbjct: 367 KGIGLDTARQVLNAPREMLIEKADLEVETVDSVLNVLRSEFEQ 409
>gi|294507805|ref|YP_003571863.1| transcription factor [Salinibacter ruber M8]
gi|294344133|emb|CBH24911.1| transcription factor [Salinibacter ruber M8]
Length = 536
Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats.
Identities = 145/427 (33%), Positives = 230/427 (53%), Gaps = 12/427 (2%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
+L+ +A K +DRD + ++ D + R YG+ + NP+ GDI + + E
Sbjct: 5 DLISSFGEIARSKDMDRDTLQIIVEDVFRAMLRKRYGSDEAFEIIFNPKQGDIQILHIQE 64
Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV EVE+ +I A+ D +G V+ L +FGR AV +A+Q Q++R+
Sbjct: 65 VVGDWEVEDPVTEIKESEAKKIDDGFAVGDEVAGGLDVSEFGRRAVMTARQTFRQRIRDI 124
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
E+++ Y E+ + +GEI+ G + +V ++ +++ V+ RDE I ++ R G+ +++
Sbjct: 125 EKEQVYQEYTELIGEIVVGEIYQVRRHETLLMHEDTELVLPRDEQIPGDHYRKGNMLRTV 184
Query: 186 IYDVRRE-QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ +VRR+ PQV++SRT P FM +LF +EVPE+++GIV++K V+R PG RAK+AV S
Sbjct: 185 VKEVRRDAGSDPQVVVSRTSPVFMERLFEVEVPEVHDGIVEIKKVARIPGDRAKVAVESH 244
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--D 302
D +DPVGACVG++G R+ AVV EL DE ID++ WS D + AL PA T V L D
Sbjct: 245 DEKVDPVGACVGVKGVRINAVVRELSDENIDVMQWSDDPQELIARALSPAEPTNVSLNQD 304
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
ED R V VP +++S AIG+RG N++LASQLTG+ ID+ E
Sbjct: 305 EDPPRARVEVPADEVSQAIGKRGVNIKLASQLTGYEIDVYREIPADEED-------IDIE 357
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
+ E L G + + + +A D +TA ++ E
Sbjct: 358 QFGDELTEETIGKLKRIGCDTGKAVLELSADALARRADLDRDTAKQVLEIIETEFEKGPG 417
Query: 423 TLQKKIR 429
++ +
Sbjct: 418 IIESIRQ 424
>gi|152965409|ref|YP_001361193.1| NusA antitermination factor [Kineococcus radiotolerans SRS30216]
gi|151359926|gb|ABS02929.1| NusA antitermination factor [Kineococcus radiotolerans SRS30216]
Length = 339
Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats.
Identities = 128/344 (37%), Positives = 191/344 (55%), Gaps = 28/344 (8%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS----DIRVEINPETGDISLFRL 65
+ + E+ I + ++ + ++ A D RVE++ +G++ +
Sbjct: 5 MAALRMLEREREIPFETLVRTIEQALLVAYHRTEHEDHKAHPDARVELDRASGEVRVLAK 64
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
D + +G P FGR+A +A+QVI+Q++R+A
Sbjct: 65 -------------------ERDDAGLVVGEF---DDTPSGFGRIAATTARQVILQRLRDA 102
Query: 126 ERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
E D E+ GEI+SG V++ + V VDLG+ +GV+ E + E G R++
Sbjct: 103 EDDAVIGEYAQTEGEIVSGVVQQGRDPRMVQVDLGSLEGVLPPQEQVPGEKYEHGSRLRC 162
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
++ V++ +GPQV+LSR+HPQ + KLF +EVPEI +G VQ+ A+SR+ G R+K+AV ++
Sbjct: 163 FVVSVKKGPKGPQVVLSRSHPQLVKKLFALEVPEIADGTVQITALSREAGHRSKMAVRAT 222
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDE 303
++ GAC+G G RV+AV+ ELR EKIDIV S D A FV NAL PA V+ V +D
Sbjct: 223 RGGVNAKGACIGPMGQRVRAVMAELRGEKIDIVDHSDDPAQFVGNALSPARVSSVEVVDL 282
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347
VIVP QLSLAIG+ GQN RLA++LTGW IDI + E
Sbjct: 283 AARSARVIVPDYQLSLAIGKEGQNARLAAKLTGWRIDIRPDTEP 326
>gi|319900402|ref|YP_004160130.1| NusA antitermination factor [Bacteroides helcogenes P 36-108]
gi|319415433|gb|ADV42544.1| NusA antitermination factor [Bacteroides helcogenes P 36-108]
Length = 421
Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats.
Identities = 138/425 (32%), Positives = 241/425 (56%), Gaps = 11/425 (2%)
Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD
Sbjct: 2 AKKEETVSLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61
Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
++R EVV + VEN QI L AR D S ++G V+D + +FGR A+ + +Q +
Sbjct: 62 EIWRNREVVADADVENSNLQIPLSEARKIDASYEVGEEVTDEVIFANFGRRAILNLRQTL 121
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177
K+ E E+D Y ++ DKVG II+ V + + +++D ++ ++ + E I + R
Sbjct: 122 ASKIMELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA
Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPIFLQRLFEMEVPEINDGLITIKKIARIPGERA 241
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++
Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKIS 301
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
+ L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E + ++ + + +
Sbjct: 302 SIRLNEEEHKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDQAVEDEDIYLD 361
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
+ +D + + A G + + + +EET E+ ++
Sbjct: 362 EFRD-----EIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEVLRILKQEF 416
Query: 418 EGIDI 422
E +
Sbjct: 417 EEEEQ 421
>gi|309811468|ref|ZP_07705250.1| transcription termination factor NusA [Dermacoccus sp. Ellin185]
gi|308434519|gb|EFP58369.1| transcription termination factor NusA [Dermacoccus sp. Ellin185]
Length = 339
Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats.
Identities = 125/342 (36%), Positives = 195/342 (57%), Gaps = 18/342 (5%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ A+ E+ I DV++ + ++ A + G+ RVE++ TG + ++
Sbjct: 5 MAALRALEREREIPMDVIVPAIEQALLLAYQKEEGSYRRARVELDRRTGHVVVWAR---- 60
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
E+ Q + +P + P +FGRVA +A+QVI+Q++R+ E +
Sbjct: 61 ---EDGEKQ---EDGTWSEPGPEFDDT------PKNFGRVAAGTARQVIMQRMRDVEDEA 108
Query: 130 QYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
+F K G+I+SGT+++ + V VD G +G++ E + E R G+R++ Y+
Sbjct: 109 ILGDFIGKEGDIVSGTIQQSLDSRFVKVDFGTVEGILPTAEQVPGETYRHGERLRCYVVS 168
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
VRR +GPQ+ LSRTHP + KLF MEVPEI +G V++ A++R+ G R K+AV ++ I
Sbjct: 169 VRRGPKGPQISLSRTHPNLVRKLFAMEVPEIADGSVEIAALAREAGHRTKIAVHATKPGI 228
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307
+ GAC+G G RV+AV++EL+ EKIDIV +S F+ AL P+ V V +D
Sbjct: 229 NAKGACIGPMGQRVRAVMSELQGEKIDIVDYSRQPDEFIAAALSPSRVESVEVVDPKARA 288
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
V+VP QLSLAIG+ GQN RLA++LTGW IDI + +
Sbjct: 289 ARVVVPDFQLSLAIGKEGQNARLAAKLTGWRIDIRPDTALAD 330
>gi|160883929|ref|ZP_02064932.1| hypothetical protein BACOVA_01903 [Bacteroides ovatus ATCC 8483]
gi|237720417|ref|ZP_04550898.1| transcription elongation factor NusA [Bacteroides sp. 2_2_4]
gi|299147096|ref|ZP_07040163.1| transcription termination factor NusA [Bacteroides sp. 3_1_23]
gi|156110659|gb|EDO12404.1| hypothetical protein BACOVA_01903 [Bacteroides ovatus ATCC 8483]
gi|229450168|gb|EEO55959.1| transcription elongation factor NusA [Bacteroides sp. 2_2_4]
gi|298514981|gb|EFI38863.1| transcription termination factor NusA [Bacteroides sp. 3_1_23]
Length = 431
Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats.
Identities = 139/432 (32%), Positives = 245/432 (56%), Gaps = 11/432 (2%)
Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD
Sbjct: 2 AKKEETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61
Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
++R EVV E++ N QISL A+ D S + G V+D + FGR A+ + +Q +
Sbjct: 62 EIWRNREVVADEDLTNPNMQISLSEAQKIDASYEEGEEVTDEVIFAKFGRRAILNLRQTL 121
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177
K+ E E+D Y ++ DKVG II+ V + + +++D ++ ++ + E I + R
Sbjct: 122 ASKILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA
Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++
Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKIS 301
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
+ L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E ++++ + + +
Sbjct: 302 SIRLNEEEKKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDENVADEDIYLD 361
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
+ +D + + A G + + + +EET E+ +
Sbjct: 362 EFRD-----EIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEVIRILKSEF 416
Query: 418 EGIDITLQKKIR 429
E D +++ K
Sbjct: 417 EEEDPSIENKDE 428
>gi|281424957|ref|ZP_06255870.1| transcription termination factor NusA [Prevotella oris F0302]
gi|281400801|gb|EFB31632.1| transcription termination factor NusA [Prevotella oris F0302]
Length = 421
Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats.
Identities = 137/423 (32%), Positives = 233/423 (55%), Gaps = 13/423 (3%)
Query: 4 ANRLELLQIADAVAYE----KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGD 59
N E + + D E K+IDR ++SV+ +S + ++G+ + V +NP+ GD
Sbjct: 5 KNEEEQISMIDTF-REFKDTKNIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGD 63
Query: 60 ISLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117
++R VV + VE+ QI+L A +P +IG VS+ + FGR A+ + +Q
Sbjct: 64 FEIYRNRVVVADGEVEDENKQIALGEALKIEPDYEIGEEVSEQVNFAKFGRRAILNLRQT 123
Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENL 176
+ K+ E E D Y ++KD+VG+I+SG V + + ++VD N++ ++ + E I +
Sbjct: 124 LASKILELEHDTLYNKYKDRVGQIVSGEVYQIWKREVLVVDDENNELILPKSEQIPADVY 183
Query: 177 RPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236
R G+ +++ I V E P+++LSRT P F+ +L EVPEI +G++ ++ ++R PG R
Sbjct: 184 RKGETIRAVILRVDNENNNPKIILSRTSPMFLERLLEAEVPEINDGLIAIRKIARMPGER 243
Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296
AK+AV S D IDPVGACVG++GSRV +V EL +E +D+V ++ + F+ AL PA V
Sbjct: 244 AKIAVESFDDRIDPVGACVGVKGSRVHGIVRELCNENLDVVNYTTNINLFIQRALSPARV 303
Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356
+ + +DE+ + EV + E++SLAIGR G N++LAS LT +TID+ E + + +
Sbjct: 304 SSINIDEENHKAEVYLQPEEVSLAIGRGGLNIKLASMLTEYTIDVFREVPEGEADEDIYL 363
Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416
+ +D+ + + + G + + + +EET + R
Sbjct: 364 DEFSD-----EIDQWVIDAIKSIGLDTAKAVLNAPREMLIEKADLEEETVDHVINVLRAE 418
Query: 417 LEG 419
E
Sbjct: 419 FEQ 421
>gi|323343775|ref|ZP_08084002.1| transcription elongation factor NusA [Prevotella oralis ATCC 33269]
gi|323095594|gb|EFZ38168.1| transcription elongation factor NusA [Prevotella oralis ATCC 33269]
Length = 421
Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats.
Identities = 136/403 (33%), Positives = 232/403 (57%), Gaps = 8/403 (1%)
Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVE--NYTC 77
K+IDR ++SV+ +S + +YG+ + V +NP+ GD ++R VV + E +
Sbjct: 24 KNIDRTTLVSVLEESFRNVLAKIYGSDENFDVIVNPDKGDFEIYRNRMVVADGEVADENK 83
Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137
+I+LK A+ +P +IG VS+P+ FGR A+ + +Q + KV E E D Y ++KD+
Sbjct: 84 EIALKEAQKIEPDYEIGEEVSEPVNFAKFGRRAILNLRQTLASKVLELEHDSLYNKYKDR 143
Query: 138 VGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196
VG++ISG V + + ++VD N++ ++ + E I + R G+ +++ I V E P
Sbjct: 144 VGQVISGEVYQIWKREVLVVDDENNELILPKSEQIPSDQYRKGETIRAVILRVDNENNNP 203
Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256
+++LSRT P F+ +L EVPEI +G++ +K ++R PG RAK+AV S D IDPVGACVG
Sbjct: 204 KIILSRTSPMFLERLLEAEVPEINDGLISIKKIARMPGERAKIAVESYDERIDPVGACVG 263
Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316
++GSRV +V EL +E ID++ ++ + F+ AL PA VT + +DE+ + EV + E+
Sbjct: 264 VKGSRVHGIVRELCNENIDVINYTSNVKLFIQRALSPAKVTSITVDEENHKAEVYLQPEE 323
Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376
+SLAIGR G N++LAS LT +TID+ +++ + + + + +D+ + +
Sbjct: 324 VSLAIGRSGLNIKLASMLTEFTIDVFRVLDENEDNEDIYLDEFAD-----EIDQWVIDAI 378
Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
A G +++ + +EET + + E
Sbjct: 379 KAIGLDTAKQVLNAPREMLIEKADLEEETVDNLLRVLKAEFEQ 421
>gi|91217187|ref|ZP_01254149.1| transcription elongation factor NusA [Psychroflexus torquis ATCC
700755]
gi|91184787|gb|EAS71168.1| transcription elongation factor NusA [Psychroflexus torquis ATCC
700755]
Length = 411
Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats.
Identities = 123/406 (30%), Positives = 223/406 (54%), Gaps = 14/406 (3%)
Query: 7 LELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
+E + + ++ + +K IDR +++++ D + A + +G + + INP+ GD+ ++
Sbjct: 1 MENIDLINSFSEFKDDKLIDRVTLMAILEDVFRNALKKKFGQDDNFDIIINPDKGDLEIW 60
Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
R VV + VE+ +ISLK AR +P ++G VS+ + GR A+ + +Q +I K
Sbjct: 61 RNRNVVNDGEVEDENKEISLKDARKIEPDFEVGEDVSEEVKLYQLGRRAILALRQNLISK 120
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGD 180
+ E + + F+D +GEI + V V + VI +D ++ +I ++ I + R GD
Sbjct: 121 IHEHDSTNTFKYFQDLIGEIYTAEVHHVRHNVVILLDDDGNELIIPKEHQIPSDFYRKGD 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
++ I V + P ++LSRT P+F+ KLF E+PE+++G++ VK R PG +AK+A
Sbjct: 181 SIRGVIEKVELKGNKPIIILSRTTPKFLEKLFEQEIPEVFDGLITVKNAVRIPGEKAKVA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V + D IDPVGACVGM+GSR+ +V EL +E ID++ ++ + ++ AL PA + +
Sbjct: 241 VDTYDDRIDPVGACVGMKGSRIHGIVRELGNENIDVINYTNNPQLYIQRALSPAKIVNIK 300
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
L+E+ EV + E++S AIGR G N+RLA LTG+ I++ + + + +
Sbjct: 301 LNEEKKYAEVTLKPEEVSKAIGRGGHNIRLAGLLTGYNIEVFRDGIEEEDVELTEFTD-- 358
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406
+++ + G + + + +S++ +EET
Sbjct: 359 ------EIEDWVIKEFGRIGLDTAKSILELDVSDLVRRTDLEEETV 398
>gi|325962805|ref|YP_004240711.1| transcription termination factor NusA [Arthrobacter
phenanthrenivorans Sphe3]
gi|323468892|gb|ADX72577.1| transcription termination factor NusA [Arthrobacter
phenanthrenivorans Sphe3]
Length = 326
Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats.
Identities = 120/337 (35%), Positives = 198/337 (58%), Gaps = 24/337 (7%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ + E+ I D+++ + ++ A G R E++ ++G ++++ +
Sbjct: 5 MSALRLLEREREIPLDLLIPTIEQALLVAYHKSPGAFEKARAELDRKSGHVTIWAV---- 60
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
E+++ I P FGR+A +A+Q+I+Q++R+ E D
Sbjct: 61 -EIDDDGAPIG-----------------EFEHTPEGFGRIAASTARQIILQRLRDVEDDN 102
Query: 130 QYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
EFK + GE++SGT+++ ++I V+LG+ + ++ E + E G+R+++ + D
Sbjct: 103 VLGEFKGREGELVSGTIQQGNNPHMIQVNLGSVEALLPPPEQVPGEKYIHGNRLRALVID 162
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V R +GP V LSR+HP + KLF +EVPEI + V++ A++R+ G R K+AV ++ I
Sbjct: 163 VHRGSKGPSVTLSRSHPGLVRKLFELEVPEIADRSVEIVALAREAGHRTKIAVKANVPGI 222
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307
+ GAC+G GSRV+AV+TEL DEKIDIV +S + ATF+ +AL P+ V V + DE
Sbjct: 223 NAKGACIGEMGSRVRAVMTELNDEKIDIVDFSENPATFIASALSPSRVNSVTITDEATRS 282
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344
V+VP QLSLAIG+ GQN RLA++LTGW IDI+++
Sbjct: 283 ARVVVPDYQLSLAIGKEGQNARLAAKLTGWRIDIVSD 319
>gi|327403853|ref|YP_004344691.1| NusA antitermination factor [Fluviicola taffensis DSM 16823]
gi|327319361|gb|AEA43853.1| NusA antitermination factor [Fluviicola taffensis DSM 16823]
Length = 411
Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats.
Identities = 135/409 (33%), Positives = 230/409 (56%), Gaps = 10/409 (2%)
Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
N LEL++ KSID+ + V+ D + + + T I V +N + GD+ +F
Sbjct: 1 MNSLELVESFSEFKELKSIDKQTMQHVLEDVFRAMLKKKFNTDEHIDVIVNIDKGDVQIF 60
Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
E+V + VE+ +I+ A +P +IG VS+ DFGR + S +Q +I +
Sbjct: 61 VNKEIVADGEVEDQNTEIAYSDAIKIEPDFEIGEEVSEEFRFNDFGRRNILSLRQNLISR 120
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGD 180
+ E E+D Y ++K+++GEII+G V +V ++V D N++ ++ + E I + + G+
Sbjct: 121 ILELEKDHLYKKYKERIGEIITGEVYQVWKKEIMVLDDENNELILPKSEQIPSDYFKKGE 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
+++ + V P ++LSR P+F+ +LF +EVPE+++G++ +K + R+PG RAK+A
Sbjct: 181 SIRAVVSKVDMRNSSPVIILSRIAPEFLERLFELEVPEVFDGLITIKRIVREPGERAKVA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S D IDPVGACVGM+GSR+ +V ELR+E ID++ ++ + F+ AL PA +T +
Sbjct: 241 VESYDDRIDPVGACVGMKGSRIHGIVRELRNENIDVINFTSNPKLFIQRALSPAKITNIE 300
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DE+ R V + +Q+SLAIG+ G N+RLA +LTG+ ID+ + E
Sbjct: 301 IDEEQKRASVFLKPDQVSLAIGKGGYNIRLAGKLTGFEIDVFRDGESDNED-------VD 353
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409
A +D I L A G + + + ++++ +EET E+
Sbjct: 354 LEEFADEIDSWILDELKAVGCDTAKSVLELTVADLVQRTDLEEETVQEV 402
>gi|189459826|ref|ZP_03008611.1| hypothetical protein BACCOP_00456 [Bacteroides coprocola DSM 17136]
gi|189433436|gb|EDV02421.1| hypothetical protein BACCOP_00456 [Bacteroides coprocola DSM 17136]
Length = 418
Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats.
Identities = 132/393 (33%), Positives = 228/393 (58%), Gaps = 8/393 (2%)
Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVE--NYTC 77
K+IDR ++SV+ +S + ++GT + V +NP+ GD ++R EVV + E N
Sbjct: 21 KNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDFEIWRNREVVADDELTNPNL 80
Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137
QISL AR D S ++G V+D + FGR A+ + +Q + K+ E E+D Y ++ DK
Sbjct: 81 QISLTEARKIDASYEVGEEVTDEVIFEKFGRRAILNLRQTLASKILELEKDSLYNKYIDK 140
Query: 138 VGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196
VG II+ V ++ +++ D ++ ++ + E I + R G+ V++ + V + P
Sbjct: 141 VGTIIAAEVYQIWKKEILLLDDEGNELLLPKTEQIPSDFYRKGETVRAVVARVDNKNNNP 200
Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256
+++LSRT P F+ +LF EVPEI +G++ +K ++R PG RAK+AV S D IDPVGACVG
Sbjct: 201 KIILSRTSPMFLQRLFEQEVPEINDGLITIKKIARIPGERAKIAVESYDERIDPVGACVG 260
Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316
++GSR+ +V ELR+E ID++ ++ + FV AL PA V+ +++ E+ + EV + E+
Sbjct: 261 VKGSRIHGIVRELRNENIDVINYTSNIQLFVQRALSPAKVSSIIMHEEEKKAEVYLKPEE 320
Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376
+SLAIG+ G N++LAS LT +TID+ E +++ + + + + +DE + + +
Sbjct: 321 VSLAIGKGGMNIKLASMLTEYTIDVYRELDENATDEDIYLDEFKD-----EIDEWVINAI 375
Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEI 409
G + + + +E T ++
Sbjct: 376 KGIGIDTAKGVLNAPREMLIEKADLEENTVDDV 408
>gi|320334652|ref|YP_004171363.1| NusA antitermination factor [Deinococcus maricopensis DSM 21211]
gi|319755941|gb|ADV67698.1| NusA antitermination factor [Deinococcus maricopensis DSM 21211]
Length = 397
Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats.
Identities = 135/384 (35%), Positives = 218/384 (56%), Gaps = 2/384 (0%)
Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70
+ VA ++I+ ++ S+ +A + V ++P++G+I + + EVVE
Sbjct: 8 EALREVAQSRNINEMQLIEAFEQSLAQAYTRNVDPDKRVEVHLDPKSGEIEVLVVKEVVE 67
Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130
+VE+ QISL A + DP ++G + P+ F R+A+Q+AKQ + QK+RE ER+
Sbjct: 68 KVEDENVQISLADALELDPEAELGEEMVFPVEREKFTRIALQAAKQTLTQKMRETERNVV 127
Query: 131 YLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDV 189
+ E+KDK G++++ V R++ N VDLG + ++ + E I E L PG+RVK Y+ +V
Sbjct: 128 FNEYKDKEGQVLNAVVARLDNKGNYFVDLGAGEAILPQREAIPGERLMPGNRVKIYLKEV 187
Query: 190 RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSID 249
R+ +GP +L SR + + L E+PE+ NGIV+VKA++R+ G R+K+AVFS + ++D
Sbjct: 188 RKTPKGPTILASRADERLLDYLLKQEIPEVANGIVEVKAIAREAGQRSKVAVFSHNPNVD 247
Query: 250 PVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIE 309
P+GAC+G RG+R+QAV EL E++D+++W F+ NAL PA V + ++ D
Sbjct: 248 PIGACIGHRGNRIQAVTGELGRERVDVILWDATPREFIRNALSPAKVGLIEVNADTREAT 307
Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVD 369
V V +QLSLAIG+ GQNVRLA++LTG+ +D+ + S A
Sbjct: 308 VTVTPDQLSLAIGKGGQNVRLAAKLTGYKVDLRETQAVSDLDAAMQQALEDEGSNASESS 367
Query: 370 EIIAHLLVAEGFADVEELACVKIS 393
F D + +A
Sbjct: 368 SSARAA-FDALFRDSKSVATATPD 390
>gi|118587523|ref|ZP_01544947.1| transcription termination protein NusA [Oenococcus oeni ATCC
BAA-1163]
gi|118431974|gb|EAV38716.1| transcription termination protein NusA [Oenococcus oeni ATCC
BAA-1163]
Length = 473
Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats.
Identities = 140/439 (31%), Positives = 224/439 (51%), Gaps = 6/439 (1%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
M S R EL A+ EK I ++ ++ + D++ A + + +++ V+++PE +
Sbjct: 1 MASDYRRELFSALQALQAEKGISQEDAITSLKDTLVTAYKKNFEGETNVEVDVDPEKQEF 60
Query: 61 SLFRLLEVVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+L ++ EV+ + + + +I LK AR+ + + + G + + P DFGR+A QS K
Sbjct: 61 NLLQIKEVIPDGDMIDPYSEIYLKDAREINSAYEAGDQIKFEINPRDFGRLAAQSGKNKS 120
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLR 177
Q +RE E++ + ++ EI+S V R + + V + + + + I E +
Sbjct: 121 TQTIREKEKEAIHARYEGFEHEIVSARVAREDQRFLWVTMPDGQEAAMGDKDRIPGETYK 180
Query: 178 PGDRVKSYIYDVRRE-QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236
GD +K I V RGPQ+ +SRT P+ + +LF EVPE+Y+G V +++++R+ G R
Sbjct: 181 TGDPIKVLINRVEDSATRGPQIYVSRTSPELVKRLFEQEVPEVYDGTVVIESIAREAGDR 240
Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296
+K+AV ++DS++DPVG VG RGSRVQAVV EL E +DIV W D A ++ NAL PA V
Sbjct: 241 SKVAVRTTDSNLDPVGTLVGPRGSRVQAVVNELHGENMDIVEWVEDEAQYIANALNPAEV 300
Query: 297 TKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355
V+ D + VIVP QLSLAIG+RGQN RLA++LT + IDI +E + + Q
Sbjct: 301 VDVIFSPDNDNEVTVIVPDYQLSLAIGKRGQNARLAAKLTKFKIDIKSETQAENDPQLQA 360
Query: 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415
E D E A + FD + A E
Sbjct: 361 ILEESAKYAEEEDQSDETDE-TDEALEDETEYADANEYFSEGADQFDASEEEKTSESAEE 419
Query: 416 YLEGIDITLQKKIRELGVS 434
+ + + K +
Sbjct: 420 SSSAEEDSSKAKAKMTEAE 438
>gi|182435606|ref|YP_001823325.1| transcription elongation factor NusA [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326776240|ref|ZP_08235505.1| NusA antitermination factor [Streptomyces cf. griseus XylebKG-1]
gi|178464122|dbj|BAG18642.1| putative transcriptional termination/antitermination factor
[Streptomyces griseus subsp. griseus NBRC 13350]
gi|326656573|gb|EGE41419.1| NusA antitermination factor [Streptomyces cf. griseus XylebKG-1]
Length = 346
Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats.
Identities = 128/345 (37%), Positives = 198/345 (57%), Gaps = 22/345 (6%)
Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70
++ +A +K I DV++ + ++ A G+ RVE++ G ++++
Sbjct: 6 KLLKGLAQDKEIPFDVLVGAIESALLIAYHRTDGSHRRARVELD-ANGHVTVWAK----- 59
Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130
E+ L+ ++ P FGR+A +AKQVI+Q++R+AE D+
Sbjct: 60 --EDPA---DLEEGQEPK---------EFDDTPSGFGRIAATTAKQVILQRLRDAEDDKT 105
Query: 131 YLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDV 189
+ E+ G++++G V++ + NV+VD+G + ++ E + E G R+++Y+ V
Sbjct: 106 FGEYAGHEGDVVTGVVQQGKDPKNVLVDIGKMEAMLPVQEQVPGEEYVHGLRLRTYVVRV 165
Query: 190 RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSID 249
+ RGP V LSRTHP + KLF +EVPEI +G V ++A++R+ G R K+AV S+ + ++
Sbjct: 166 AKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVVIEAIAREAGHRTKIAVRSTRAGLN 225
Query: 250 PVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRI 308
P GAC+G GSRV+ V+ EL EKIDIV WS D A V NAL PA V+KV +D
Sbjct: 226 PKGACIGPMGSRVRNVMAELHGEKIDIVDWSEDPAEMVANALSPARVSKVEVVDLGARSA 285
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353
V VP QLSLAIG+ GQN RLA++LTGW IDI + E R+
Sbjct: 286 RVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTETDEEREN 330
>gi|239944687|ref|ZP_04696624.1| transcription elongation factor NusA [Streptomyces roseosporus NRRL
15998]
gi|239991150|ref|ZP_04711814.1| transcription elongation factor NusA [Streptomyces roseosporus NRRL
11379]
gi|291448148|ref|ZP_06587538.1| transcription elongation factor NusA [Streptomyces roseosporus NRRL
15998]
gi|291351095|gb|EFE77999.1| transcription elongation factor NusA [Streptomyces roseosporus NRRL
15998]
Length = 346
Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats.
Identities = 128/345 (37%), Positives = 199/345 (57%), Gaps = 22/345 (6%)
Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70
++ +A +K I DV++ + ++ A G+ RV+++ E G ++++
Sbjct: 6 KLLKGLAQDKEIPFDVLVGAIESALLIAYHRTDGSYRRARVKLD-ENGHVTVWAK----- 59
Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130
E+ L+ ++ P FGR+A +AKQVI+Q++R+AE D+
Sbjct: 60 --EDPA---DLEEGQEPK---------EFDDTPSGFGRIAATTAKQVILQRLRDAEDDKT 105
Query: 131 YLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDV 189
+ E+ G++++G V++ + NV+VD+G + ++ E + E G R+++Y+ V
Sbjct: 106 FGEYAGHEGDVVTGVVQQGKDPKNVLVDIGKLEAILPVQEQVPGEEYTHGLRLRTYVVRV 165
Query: 190 RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSID 249
+ RGP V LSRTHP + KLF +EVPEI +G V ++A++R+ G R K+AV S+ + ++
Sbjct: 166 AKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVVIEAIAREAGHRTKIAVRSTRAGLN 225
Query: 250 PVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRI 308
P GAC+G GSRV+ V+ EL EKIDIV WS D A V NAL PA V+KV +D
Sbjct: 226 PKGACIGPMGSRVRNVMAELHGEKIDIVDWSDDPAEMVANALSPARVSKVEVVDLGARSA 285
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353
V VP QLSLAIG+ GQN RLA++LTGW IDI + E R+
Sbjct: 286 RVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTETDEEREN 330
>gi|256820092|ref|YP_003141371.1| transcription elongation factor NusA [Capnocytophaga ochracea DSM
7271]
gi|256581675|gb|ACU92810.1| NusA antitermination factor [Capnocytophaga ochracea DSM 7271]
Length = 410
Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats.
Identities = 128/418 (30%), Positives = 228/418 (54%), Gaps = 12/418 (2%)
Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
N LEL++ +K I+R+ +++++ + + + YG+ + + INP+ GD+ +F
Sbjct: 1 MNSLELIESFSEFKDDKLINRETLMAILEEVFRNTLKKKYGSDDNFDIIINPDKGDLQIF 60
Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
R VVE+ V N QI L VAR +P ++G VS+ + D GR A+ + +Q +I K
Sbjct: 61 RNRVVVEDGAVTNDNQQIELSVARKIEPDFEVGEDVSEEIKIDDLGRRAILALRQNLISK 120
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGD 180
+ E + Y FKD +G++ + + + +I+ D ++ ++ +++ I + + G+
Sbjct: 121 IHEYDSMTIYQRFKDLIGQLYVAEIHHIRHKAIILLDDEGNEIILPKEKQIPSDFFKKGE 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
V+ I V + P +++SRT P F+ +LF E+PEI +G++ + V R PG +AK+A
Sbjct: 181 HVRGIIESVELKSTKPTIIMSRTSPLFLERLFEQEIPEIADGLITINRVVRIPGEKAKVA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S D ID VGACVG+RGSR+ +V EL +E ID++ ++ + + AL PA V+ VV
Sbjct: 241 VDSFDDRIDAVGACVGVRGSRIHGIVRELGNENIDVLPFTNNPQLLITRALAPARVSSVV 300
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
++E+ R +V + E++S AIG+ G N+RLASQL+G+ ID+ E + +
Sbjct: 301 INEEEKRADVYLANEEVSKAIGKSGYNIRLASQLSGYEIDVYREGATEED--------IE 352
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE-IQGRAREYL 417
++E + L G + + + ++ +EET E ++ A E+
Sbjct: 353 LSEFNDEIEEWVIEELQKAGLDTAKSVLELSAEDLMQRTDLEEETVNEVLRILAEEFE 410
>gi|299142250|ref|ZP_07035383.1| transcription termination factor NusA [Prevotella oris C735]
gi|298576339|gb|EFI48212.1| transcription termination factor NusA [Prevotella oris C735]
Length = 421
Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats.
Identities = 132/403 (32%), Positives = 227/403 (56%), Gaps = 8/403 (1%)
Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77
K+IDR ++SV+ +S + ++G+ + V +NP+ GD ++R VV + VE+
Sbjct: 24 KNIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIYRNRVVVADGEVEDENK 83
Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137
QI+L A +P +IG VS+ + FGR A+ + +Q + K+ E E D Y ++KD+
Sbjct: 84 QIALGEALKIEPDYEIGEEVSEQVNFAKFGRRAILNLRQTLASKILELEHDTLYNKYKDR 143
Query: 138 VGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196
VG+I+SG + + + ++VD N++ ++ + E I + R G+ +++ I V E P
Sbjct: 144 VGQIVSGEIYQIWKREVLVVDDENNELILPKSEQIPADVYRKGETIRAVILRVDNENNNP 203
Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256
+++LSRT P F+ +L EVPEI +G++ ++ ++R PG RAK+AV S D IDPVGACVG
Sbjct: 204 KIILSRTSPMFLERLLEAEVPEINDGLIAIRKIARMPGERAKIAVESFDDRIDPVGACVG 263
Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316
++GSRV +V EL +E +D+V ++ + F+ AL PA V+ + +DE+ + EV + E+
Sbjct: 264 VKGSRVHGIVRELCNENLDVVNYTTNINLFIQRALSPARVSSINIDEENHKAEVYLQPEE 323
Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376
+SLAIGR G N++LAS LT +TID+ E + + + + +D+ + +
Sbjct: 324 VSLAIGRGGLNIKLASMLTEYTIDVFREVPEGEADEDIYLDEFSD-----EIDQWVIDAI 378
Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+ G + + + +EET + R E
Sbjct: 379 KSIGLDTAKAVLNAPREMLIEKADLEEETVDHVINVLRAEFEQ 421
>gi|116669975|ref|YP_830908.1| NusA antitermination factor [Arthrobacter sp. FB24]
gi|116610084|gb|ABK02808.1| NusA antitermination factor [Arthrobacter sp. FB24]
Length = 326
Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats.
Identities = 122/344 (35%), Positives = 199/344 (57%), Gaps = 24/344 (6%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ + E+ I D+++ + ++ A G R E++ ++G ++++
Sbjct: 5 MSALRLLEREREIPLDLLIPTIEQALLVAYHKSPGAFEKARAELDRKSGHVTIWA----- 59
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
+I D IG P FGR+A +A+Q+I+Q++R+AE D
Sbjct: 60 -------TEI-------DDDGAPIGEF---EDTPAGFGRIAASTARQIILQRLRDAEDDN 102
Query: 130 QYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
+FK + GE+++GT+++ ++I V+LG + ++ E + E G+R+++++ D
Sbjct: 103 VLGQFKGREGELVAGTIQQGNNPHMIQVNLGTVEALLPPPEQVPGEKYIHGNRLRAFVID 162
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V R +GP + LSR+HP + KLF +EVPEI + V++ A++R+ G R K+AV ++ I
Sbjct: 163 VHRGTKGPSITLSRSHPGLVRKLFELEVPEIADRSVEIVALAREAGHRTKIAVKANIPGI 222
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307
+ GAC+G GSRV+AV+TEL DEKIDIV +S D ATF+ +AL P+ V V + DE
Sbjct: 223 NAKGACIGEMGSRVRAVMTELNDEKIDIVDFSEDPATFIASALSPSRVNSVTITDEATRS 282
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351
V+VP QLSLAIG+ GQN RLA++LTGW IDI+++ S
Sbjct: 283 ARVVVPDYQLSLAIGKEGQNARLAAKLTGWRIDIVSDAAVSREN 326
>gi|146299389|ref|YP_001193980.1| transcription elongation factor NusA [Flavobacterium johnsoniae
UW101]
gi|146153807|gb|ABQ04661.1| NusA antitermination factor [Flavobacterium johnsoniae UW101]
Length = 417
Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats.
Identities = 133/419 (31%), Positives = 235/419 (56%), Gaps = 8/419 (1%)
Query: 7 LELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
+E L + D+ + K IDR +++++ D + A + YG+ + + INP+ GD+ ++
Sbjct: 1 MENLALIDSFSEFKDNKLIDRVTLMAILEDVFRNALKKKYGSDDNFDIIINPDKGDMEIW 60
Query: 64 RLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
R +V E+++ +I+L AR + +IG VS+ + +D GR A+ + +Q +I K
Sbjct: 61 RRRVIVADEDLDFENEEITLTEARMIEADFEIGEEVSEEVKLIDLGRRAILALRQNLISK 120
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGD 180
+ E + Y +FKD +G+I + V V VI VD ++ V+ +++ I + R GD
Sbjct: 121 IHEHDNTNLYKQFKDIIGDIYTAEVHHVRPRVVILVDDEGNEIVLPKEKQIPSDFFRKGD 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
V+ I V + PQ+++SRT +F+ KLF E+PE+++G++ VK V R PG +AK+A
Sbjct: 181 NVRGIIESVELKGNKPQIIMSRTSEKFLEKLFEQEIPEVFDGLITVKNVVRIPGEKAKVA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S D IDPVGACVGM+GSR+ +V EL +E ID++ ++ + F+ AL PA V+ +
Sbjct: 241 VDSYDDRIDPVGACVGMKGSRIHGIVRELGNENIDVINYTNNIQLFITRALSPAKVSSIK 300
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DE+ R EV + E++S AIGR G N++LA QLTG+ +D+I E + + + +
Sbjct: 301 IDEESKRAEVFLKLEEVSKAIGRGGHNIKLAGQLTGYELDVIREGDVAG--TVADEDDVE 358
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+ ++E + G + + + ++ +EET +++ +E +
Sbjct: 359 LTEFSDEIEEWVIEEFAKIGLDTAKSILKHDVEDLVRRTDLEEETILDVMKILKEEFDS 417
>gi|298206855|ref|YP_003715034.1| transcription elongation factor NusA [Croceibacter atlanticus
HTCC2559]
gi|83849489|gb|EAP87357.1| transcription elongation factor NusA [Croceibacter atlanticus
HTCC2559]
Length = 410
Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats.
Identities = 137/419 (32%), Positives = 234/419 (55%), Gaps = 15/419 (3%)
Query: 7 LELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
+E + + ++ + +K IDR +++++ + + A + +G + + INP+ GD+ ++
Sbjct: 1 MENIALIESFSEFKDDKLIDRVTLMAILEEVFRSALKRKFGEDDNFDIIINPDKGDLEIW 60
Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
R VVE+ VE+ +ISL AR +P ++G VS+ + +D GR A+ + +Q +I K
Sbjct: 61 RNRVVVEDGMVEDDNSEISLTQARKIEPDFEVGEDVSEEVKLIDLGRRAILALRQNLIAK 120
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGD 180
+ E + Y +FK+ +GE+ S V + + VI+ D ++ ++ +D I + R G+
Sbjct: 121 IHEHDNTNIYNQFKELIGEMYSAEVHHIRHRVVILLDDEGNELIMPKDRQIPSDFFRKGE 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
V+ I V + P ++ SRT P F+ KLF E+PE+++G++QVK V R PG +AK+A
Sbjct: 181 SVRGVIESVELKGNKPAIIFSRTSPLFLEKLFEQEIPEVFDGLIQVKKVVRIPGEKAKVA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S D IDPVGACVG++GSR+ +V EL +E ID++ ++ + + AL PA VT V
Sbjct: 241 VDSYDDRIDPVGACVGVKGSRIHGIVRELGNENIDVINYTSNDQLLINRALSPARVTSVK 300
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
L+ + R EV++ E++S AIGR G N+RLASQLTG+ ID+ E + K+F++
Sbjct: 301 LNSETMRAEVMLKPEEVSKAIGRGGHNIRLASQLTGYEIDVFREGVEEDVELKEFSD--- 357
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+D I G + + + ++ +EET E+ RE +
Sbjct: 358 ------EIDAWIIAEFSKIGLDTAKAILEQDLDDLVRRTDLEEETIREVVQILREEFDQ 410
>gi|255033849|ref|YP_003084470.1| transcription elongation factor NusA [Dyadobacter fermentans DSM
18053]
gi|254946605|gb|ACT91305.1| NusA antitermination factor [Dyadobacter fermentans DSM 18053]
Length = 413
Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats.
Identities = 144/407 (35%), Positives = 236/407 (57%), Gaps = 10/407 (2%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
L++ A K+IDR ++SV+ + + R YGT + V INPE+GD+ ++R E+
Sbjct: 6 LIESFAEFASSKNIDRPTMISVLEEVFRTMIRKKYGTDDNFDVIINPESGDLEMWRTREI 65
Query: 69 VEEVENYTCQ---ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
V++ + I L AR ++G V++ + ++FGR VQ+A+Q +IQK+++
Sbjct: 66 VDDNSEDIWEYNKIPLNEARKIQSDFEVGEEVAEEVKLVEFGRRLVQTARQTLIQKIKDM 125
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKS 184
E++ Y ++KD+VGE+I+G V + VI VD ++ + R E IS++ R G+ VKS
Sbjct: 126 EKEIMYEKYKDQVGEMITGEVYQTLRHEVIIVDSEGNELSLPRTEQISKDRFRKGESVKS 185
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
I+ V P++ LSRT P F+ +LF +E+PEIY+GI+ V+ V R+PG RAK+AV S
Sbjct: 186 VIHKVEMNNGSPKITLSRTSPVFLERLFEVEIPEIYDGIISVRKVVREPGERAKVAVESY 245
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGM+GSR+ ++V EL +E ID++ ++ + + AL PA V+ + +D +
Sbjct: 246 DDRIDPVGACVGMKGSRIHSIVRELGNENIDVINYTDNLELLISRALSPAKVSSMQIDRE 305
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
R+ V + +Q+SLAIG+ GQN++LA +L G ID+ + E+ + D E +
Sbjct: 306 AKRVSVFLKPDQVSLAIGKGGQNIKLAGKLVGMEIDVFRDIEEQNDEDVDLTEFSD---- 361
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411
+DE I L G + + + E+ +E T ++
Sbjct: 362 --EIDEWIIDELHKIGLDTAKSVLALSKEELVRRTDLEEATVEDVLD 406
>gi|260910869|ref|ZP_05917513.1| N utilization substance protein A [Prevotella sp. oral taxon 472
str. F0295]
gi|260635020|gb|EEX53066.1| N utilization substance protein A [Prevotella sp. oral taxon 472
str. F0295]
Length = 422
Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats.
Identities = 139/427 (32%), Positives = 238/427 (55%), Gaps = 14/427 (3%)
Query: 1 MVSANRLE-LLQIADAVAYE----KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINP 55
MV+ + E +L + D E K+IDR ++SV+ +S + ++G+ + V +NP
Sbjct: 1 MVARKKDENILSMVDTF-KEFKDTKNIDRMTLVSVLEESFRNVLARIFGSDENFDVIVNP 59
Query: 56 ETGDISLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQS 113
+ GD ++R VV + VE+ QI+L A+ + ++G V++ + FGR A+ +
Sbjct: 60 DKGDFEIYRNRMVVADGEVEDENKQIALTEAQKIEHDYEVGEEVTERVDFAKFGRRAILT 119
Query: 114 AKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETIS 172
+Q + K+ E E D Y ++KD+VG++I+G V + + +IVD N++ ++ + E I
Sbjct: 120 LRQTLASKILELEHDSLYNKYKDRVGQVIAGEVYQVWKREVLIVDDENNELILPKSEQIP 179
Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRD 232
+ R G+ +++ I V E P+++LSRT P F+ +L EVPEI +G++ +K ++R
Sbjct: 180 ADQYRKGETIRAVILRVDNENNNPKIILSRTSPMFLERLLEAEVPEINDGLISIKRIARM 239
Query: 233 PGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALR 292
PG RAK+AV S D IDPVGACVG+RGSRV +V EL +E ID++ ++ ++ F+ AL
Sbjct: 240 PGERAKIAVESYDERIDPVGACVGVRGSRVHGIVRELCNENIDVINYTANTKLFIQRALS 299
Query: 293 PAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
PA V+ + +DE+ + EV + E++SLAIGR G N++LAS LT +TID+ E + +
Sbjct: 300 PAQVSSINIDEENRKAEVFLHPEEVSLAIGRGGLNIKLASMLTEYTIDVFREVAEGEADE 359
Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412
+ + VD+ + + + G + + + +EET +
Sbjct: 360 DIYLDEFSD-----EVDQWVIDAIKSIGLDTAKAVLNAPREMLVEKADLEEETVDSLLRV 414
Query: 413 AREYLEG 419
R E
Sbjct: 415 LRAEFEQ 421
>gi|118470868|ref|YP_886962.1| transcription elongation factor NusA [Mycobacterium smegmatis str.
MC2 155]
gi|118172155|gb|ABK73051.1| transcription termination factor NusA [Mycobacterium smegmatis str.
MC2 155]
Length = 343
Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats.
Identities = 133/360 (36%), Positives = 195/360 (54%), Gaps = 31/360 (8%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ A+ +K I DVV+ + ++ A R G D R++I+ +TG + +
Sbjct: 5 MAALHAIEADKGISVDVVVETIKSALLTAYRHTDGHEPDARIDIDRKTGVVKV------- 57
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
+AR D ++ + P FGR+A +A+QVI+Q++R+AE ++
Sbjct: 58 -------------IARQTDADGNV--LAEWDDTPEGFGRIAATTARQVILQRLRDAENEK 102
Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETISRENLRPGDR 181
Y EF G+I++G ++R N V+V +G S+GVI E + E GDR
Sbjct: 103 VYGEFAAHEGDIVAGVIQRDARANARGLVVVRMGSETKGSEGVIPAAEQVPGERYEHGDR 162
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V+ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV
Sbjct: 163 VRCYVVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV 222
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV- 300
S ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V
Sbjct: 223 ASRVPGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSV 282
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DE VIVP QLSLAIG+ GQN RLA++LTGW IDI ++ +
Sbjct: 283 IDEAGRAARVIVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDAAPVGDADARHGAAHD 342
>gi|288801646|ref|ZP_06407088.1| transcription termination factor NusA [Prevotella melaninogenica
D18]
gi|288335688|gb|EFC74121.1| transcription termination factor NusA [Prevotella melaninogenica
D18]
Length = 421
Score = 283 bits (725), Expect = 5e-74, Method: Composition-based stats.
Identities = 137/403 (33%), Positives = 230/403 (57%), Gaps = 8/403 (1%)
Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77
KSIDR ++SV+ +S + ++G+ + V +NP+ GD + R VV + VE+
Sbjct: 24 KSIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIHRNRVVVADGEVEDENK 83
Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137
+ISL AR + ++G VS+ + FGR A+ + +Q + K+ E E D Y ++KD+
Sbjct: 84 EISLTDARKIEADYEVGEDVSEEVDFNKFGRRAILNLRQTLASKILELEHDSLYNKYKDR 143
Query: 138 VGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196
VG+IISG V + + ++VD N++ ++ + E I R+ R G+ V++ I+ V E P
Sbjct: 144 VGQIISGEVYQTWKREVLLVDEENNELILPKGEQIPRDQYRKGETVRAVIHRVDNENNNP 203
Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256
+++LSRT P+F+ +L EVPEI +G++ ++ ++R PG RAK+AV S D IDPVGACVG
Sbjct: 204 KIILSRTAPEFLERLLEAEVPEINDGLIAIRKIARMPGERAKIAVESFDERIDPVGACVG 263
Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316
+RGSRV +V EL +E +D++ W+ ++ F+ AL PA V+ + +DE+ + EV + E+
Sbjct: 264 VRGSRVHGIVRELCNENLDVINWTANTKLFIQRALAPAKVSSLTVDEENKKAEVYLQPEE 323
Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376
+SLAIGR G N++LAS LTG+TID+ E ++ + + + +D+ + +
Sbjct: 324 VSLAIGRGGMNIKLASMLTGYTIDVFRELDEQNAEEDIYLDEFSD-----EIDQWVIDAI 378
Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
G ++ + + ET + R E
Sbjct: 379 KGIGLDTARQVLNAPREMLIEKADLEVETVDSVLNVLRSEFEQ 421
>gi|315225519|ref|ZP_07867329.1| transcription termination factor NusA [Capnocytophaga ochracea
F0287]
gi|314944463|gb|EFS96502.1| transcription termination factor NusA [Capnocytophaga ochracea
F0287]
Length = 410
Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats.
Identities = 128/418 (30%), Positives = 228/418 (54%), Gaps = 12/418 (2%)
Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
N LEL++ +K I+R+ +++++ + + + YG+ + + INP+ GD+ +F
Sbjct: 1 MNSLELIESFSEFKDDKLINRETLMAILEEVFRNTLKKKYGSDDNFDIIINPDKGDLQIF 60
Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
R VVE+ V N QI L VAR +P ++G VS+ + D GR A+ + +Q +I K
Sbjct: 61 RNRVVVEDGAVTNDNQQIELSVARKIEPDFEVGEDVSEEIKINDLGRRAILALRQNLISK 120
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGD 180
+ E + Y FKD +G++ + + + +I+ D ++ ++ +++ I + + G+
Sbjct: 121 IHEYDSMTIYQRFKDLIGQLYVAEIHHIRHKAIILLDDEGNEIILPKEKQIPSDFFKKGE 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
V+ I V + P +++SRT P F+ +LF E+PEI +G++ + V R PG +AK+A
Sbjct: 181 HVRGIIESVELKSTKPTIIMSRTSPLFLERLFEQEIPEIADGLITINKVVRIPGEKAKVA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S D ID VGACVG+RGSR+ +V EL +E ID++ ++ + + AL PA V+ V+
Sbjct: 241 VDSFDDRIDAVGACVGVRGSRIHGIVRELGNENIDVLPFTNNPQLLITRALAPARVSSVI 300
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
++E+ R +V + E++S AIG+ G N+RLASQL+G+ ID+ E + +
Sbjct: 301 INEEEKRADVYLANEEVSKAIGKSGYNIRLASQLSGYEIDVYREGATEED--------IE 352
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE-IQGRAREYL 417
++E + L G + + + E+ +EET E ++ A E+
Sbjct: 353 LSEFNDEIEEWVIEELQKAGLDTAKSVLELSAEELMQRTDLEEETVSEVLRILAEEFE 410
>gi|300727483|ref|ZP_07060874.1| transcription termination factor NusA [Prevotella bryantii B14]
gi|299775186|gb|EFI71787.1| transcription termination factor NusA [Prevotella bryantii B14]
Length = 420
Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats.
Identities = 135/402 (33%), Positives = 228/402 (56%), Gaps = 8/402 (1%)
Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77
K+IDR ++SV+ +S + ++G+ + V +NP+ GD ++R VV + +E+
Sbjct: 24 KNIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIYRNRVVVADGEIEDENK 83
Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137
QISL AR +P ++G VS+ + FGR AV + +Q + K+ E E D Y ++KD+
Sbjct: 84 QISLTEARKIEPDYEVGEDVSEKVDFSKFGRRAVLNLRQTLASKILELEHDSLYNKYKDR 143
Query: 138 VGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196
VG+IISG V + + +IVD N++ ++ + E I + R G+ V++ I V E P
Sbjct: 144 VGQIISGEVYQIWKREVLIVDDENNELILPKSEQIPADQYRKGETVRAVIARVDNENNNP 203
Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256
+++LSRT P F+ +L EVPEI +G++ ++ ++R PG RAK+AV S D IDPVGACVG
Sbjct: 204 KIILSRTSPMFLERLLEAEVPEINDGLIAIRKIARMPGERAKIAVESFDERIDPVGACVG 263
Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316
++GSRV +V EL +E ID++ ++ + F+ AL PA V+ + ++E+ + EV + E+
Sbjct: 264 VKGSRVHGIVRELCNENIDVINYTSNIKLFIQRALSPAKVSSININEEEKKAEVYLQPEE 323
Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376
+SLAIGR G N++LAS LT +TID+ E +++ + + +D+ + +
Sbjct: 324 VSLAIGRGGLNIKLASMLTEFTIDVFREIDENEAEDDIYLDEFSD-----EIDQWVIDAI 378
Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
G ++ + +EET + + E
Sbjct: 379 KGIGLDTARQVLNAPREMLVEKADLEEETVDNVINILKAEFE 420
>gi|260591778|ref|ZP_05857236.1| transcription termination factor NusA [Prevotella veroralis F0319]
gi|260536062|gb|EEX18679.1| transcription termination factor NusA [Prevotella veroralis F0319]
Length = 421
Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats.
Identities = 134/395 (33%), Positives = 226/395 (57%), Gaps = 8/395 (2%)
Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVE--NYTC 77
KSIDR ++SV+ +S + ++G+ + V +NP+ GD + R VV + E +
Sbjct: 24 KSIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIHRNRVVVADGEVKDENK 83
Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137
+ISL AR + ++G VS+ + FGR A+ + +Q + K+ E E D Y ++KD+
Sbjct: 84 EISLTDARKIEADYEVGEDVSEEVDFNKFGRRAILNLRQTLASKILELEHDSLYNKYKDR 143
Query: 138 VGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196
VG+IISG V + + ++VD N++ ++ + E I R+ R G+ +++ I V E P
Sbjct: 144 VGQIISGEVYQTWKREVLLVDDENNELILPKGEQIPRDQYRKGETIRAVILRVDNENNNP 203
Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256
+++LSRT P+F+ +L EVPEI G++ ++ ++R PG RAK+AV S D IDPVGACVG
Sbjct: 204 KIILSRTAPEFLERLLEAEVPEIAEGLIAIRKIARMPGERAKIAVESFDDRIDPVGACVG 263
Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316
+RGSRV +V EL +E +D++ W+ ++ F+ AL PA V+ + +DE+ + EV + E+
Sbjct: 264 VRGSRVHGIVRELCNENLDVINWTANTKLFIQRALAPAKVSSLTIDEENKKAEVYLQPEE 323
Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376
+SLAIGR G N++LAS LTG+TID+ E ++ + + + +D+ + +
Sbjct: 324 VSLAIGRGGMNIKLASMLTGYTIDVFRELDEQNAEEDIYLDEFSD-----EIDQWVIDAI 378
Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411
G ++ + +EET +
Sbjct: 379 KGIGLDTARQVLNAPREMLIEKADLEEETVDNVLN 413
>gi|213962910|ref|ZP_03391170.1| transcription termination factor NusA [Capnocytophaga sputigena
Capno]
gi|213954567|gb|EEB65889.1| transcription termination factor NusA [Capnocytophaga sputigena
Capno]
Length = 410
Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats.
Identities = 126/418 (30%), Positives = 228/418 (54%), Gaps = 12/418 (2%)
Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
N LEL++ +K I+R+ +++++ + + + YG+ + + INP+ GD+ +F
Sbjct: 1 MNSLELIESFSEFKDDKLINRETLMAILEEVFRNTLKKKYGSDDNFDIIINPDKGDLQIF 60
Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
R VVE+ V N QI+L AR +P ++G VS+ + D GR A+ + +Q +I K
Sbjct: 61 RNRVVVEDDAVTNDNQQIALSAARKIEPDFEVGEDVSEEIKINDLGRRAILALRQNLISK 120
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGD 180
+ E + Y FKD +G++ + + + +I+ D ++ ++ +++ I + + G+
Sbjct: 121 IHEYDSMTIYQRFKDLIGQLYVAEIHHIRHKAIILLDDEGNEIILPKEKQIPSDFFKKGE 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
V+ I V + P +++SRT P F+ +LF E+PEI +G++ + V R PG +AK+A
Sbjct: 181 HVRGIIESVELKSTKPTIIMSRTSPVFLERLFEQEIPEIADGLITISKVVRIPGEKAKVA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S D ID VGACVG+RG+R+ +V EL +E ID++ ++ + + AL PA V+ V+
Sbjct: 241 VDSFDERIDAVGACVGVRGARIHGIVRELGNENIDVLPFTNNPQLLITRALAPARVSSVI 300
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
++E+ R +V + E++S AIG+ G N+RLASQL+G+ ID+ E + +
Sbjct: 301 INEEEKRADVYLANEEVSKAIGKSGYNIRLASQLSGYEIDVYREGVTEEDIELTEFND-- 358
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE-IQGRAREYL 417
+++ + L G + + + E+ +EET E +Q A E+
Sbjct: 359 ------EIEQWVIEELQKAGLDTAKSVLELSAEELMQRTDLEEETVNEVLQVLAAEFE 410
>gi|325299860|ref|YP_004259777.1| NusA antitermination factor [Bacteroides salanitronis DSM 18170]
gi|324319413|gb|ADY37304.1| NusA antitermination factor [Bacteroides salanitronis DSM 18170]
Length = 423
Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats.
Identities = 132/403 (32%), Positives = 229/403 (56%), Gaps = 8/403 (1%)
Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV--EEVENYTC 77
K+IDR ++SV+ +S + ++GT + V +NP+ GD ++R EVV E+ N
Sbjct: 21 KNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDFEIWRNREVVADEDFANPNR 80
Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137
QISL AR D S ++G V+D + FGR A+ + +Q + K+ E E+D Y ++ D+
Sbjct: 81 QISLTEARKIDASYEVGEEVTDEVIFEKFGRRAILNLRQTLASKILELEKDSLYNKYIDR 140
Query: 138 VGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196
VG II+ V ++ +++ D ++ ++ + E I + R G+ V++ + V + P
Sbjct: 141 VGTIIAAEVYQIWKKEILLLDDEGNELLLPKAEQIPSDFYRKGETVRAVVARVDNKNNNP 200
Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256
+++LSRT P+F+ +LF EVPEI +G++ +K ++R PG RAK+AV S D IDPVGACVG
Sbjct: 201 KIILSRTAPEFLQRLFEQEVPEINDGLITIKKIARIPGERAKIAVESYDDRIDPVGACVG 260
Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316
++GSR+ +V ELR+E ID++ ++ + F+ AL PA V+ +V+ E+ R EV + E+
Sbjct: 261 VKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPATVSSIVMHEEEKRAEVYLKPEE 320
Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376
+SLAIG+ G N++LAS LT +TID+ E +++ + + + + +D + +
Sbjct: 321 VSLAIGKGGMNIKLASMLTEYTIDVYREVDENAVDEDIYLDEFKD-----EIDGWVIDAI 375
Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
G + + + +E T ++ + E
Sbjct: 376 KGIGIETAKGVLNAPREMLIEKADLEENTVDDVLRILKAEFEE 418
>gi|332292194|ref|YP_004430803.1| NusA antitermination factor [Krokinobacter diaphorus 4H-3-7-5]
gi|332170280|gb|AEE19535.1| NusA antitermination factor [Krokinobacter diaphorus 4H-3-7-5]
Length = 410
Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats.
Identities = 122/419 (29%), Positives = 226/419 (53%), Gaps = 15/419 (3%)
Query: 7 LELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
+E L + D+ + +K IDR +++++ + + + +G+ + + INP+ GD+ ++
Sbjct: 1 MENLALIDSFSEFKDDKLIDRVTLMAILEEVFRSTLKRRFGSDDNFDIIINPDKGDLEIW 60
Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
R VV + VE+ +ISL AR + ++G VS+ + D GR ++ + +Q +I K
Sbjct: 61 RNRVVVADGEVEDDNEEISLTDARKIEEDFEVGEDVSEEVKLFDLGRRSILALRQNLISK 120
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGD 180
+ E + Y +FK+ GE+ + V + + +I +D ++ ++ +D I + R G+
Sbjct: 121 IHEHDNTNIYKQFKELEGELYTAEVHHIRHRAIILLDDDGNEIILPKDRQIPSDFFRKGE 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
V+ I V + P +++SRT P F+ KLF E+PE+++G++ VK V R PG +AK+A
Sbjct: 181 NVRGVIESVELKGNKPSIVMSRTSPLFLEKLFESEIPEVFDGLITVKNVVRIPGEKAKVA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S D IDPVGACVGM+GSR+ +V EL +E ID++ ++ + ++ AL PA +T +
Sbjct: 241 VDSYDDRIDPVGACVGMKGSRIHGIVRELGNENIDVINYTTNLNLYITRALSPARITSIK 300
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
++E+ + ++ E++S AIGR G N+RLA QLTG+ ID+ E + +F++ +
Sbjct: 301 INEENKTAQAVLKPEEVSKAIGRGGHNIRLAGQLTGYEIDVYREGVEEDVELTEFSDEIE 360
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
++ G + ++ +EET +++ + E
Sbjct: 361 AWV---------IEAFAKIGLDTARSVLEQDAEDLVRRTDLEEETVLDVMRILKAEFEE 410
>gi|126663078|ref|ZP_01734076.1| transcription elongation factor NusA [Flavobacteria bacterium
BAL38]
gi|126624736|gb|EAZ95426.1| transcription elongation factor NusA [Flavobacteria bacterium
BAL38]
Length = 413
Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats.
Identities = 135/418 (32%), Positives = 237/418 (56%), Gaps = 12/418 (2%)
Query: 7 LELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
+E + + ++ + +K IDR +++++ D + A + YG+ + + INP+ GD+ ++
Sbjct: 1 MENIALIESFSEFKDDKLIDRVTLMAILEDVFRNALKKKYGSDDNFDIIINPDKGDMEIW 60
Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
R VVE+ VE+ +ISL AR +P ++G VS+ + + GR A+ S +Q +I K
Sbjct: 61 RNRVVVEDGEVEDPNSEISLTEARRIEPDFEVGEDVSEEVKLIQLGRRAILSLRQNLISK 120
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGD 180
+ E + Y +FKD +G+I + V V VI+ D ++ V+ +++ I + + GD
Sbjct: 121 IHEHDNTNLYKQFKDLIGDIYTAEVHHVRPKAVILMDDEGNEIVLPKEKQIPNDYFKKGD 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
V+ I +V + PQ+++SRT P+F+ KLF E+PE+++G++ +K V R PG +AK+A
Sbjct: 181 NVRGVIENVELKGNKPQIIMSRTAPEFLEKLFEQEIPEVFDGLITIKKVVRIPGEKAKVA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S D IDPVGACVGM+GSR+ +V EL +E ID++ ++ ++ ++ AL PA V+ V
Sbjct: 241 VDSYDDRIDPVGACVGMKGSRIHGIVRELGNENIDVINFTTNAQLYITRALSPAKVSTVK 300
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
++E+ EV + E++S AIGR G N++LAS LTG+ ID+I E + E +
Sbjct: 301 INEEAKTAEVFLKIEEVSKAIGRGGNNIKLASLLTGYEIDVIREGIAQEEDDVELREFSD 360
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
++ I G + ++++ +EET +++ +E LE
Sbjct: 361 ------EIEAWIIEEFEKIGLDTARSVLNQDVADLVRRTDLEEETILDVINILKEELE 412
>gi|149370939|ref|ZP_01890534.1| transcription elongation factor NusA [unidentified eubacterium
SCB49]
gi|149355725|gb|EDM44283.1| transcription elongation factor NusA [unidentified eubacterium
SCB49]
Length = 410
Score = 283 bits (724), Expect = 6e-74, Method: Composition-based stats.
Identities = 133/419 (31%), Positives = 231/419 (55%), Gaps = 15/419 (3%)
Query: 7 LELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
+E L + D+ + +K IDR +++++ + + A + YG+ + + +NP+ GD+ ++
Sbjct: 1 MENLALIDSFSEFKDDKQIDRVTLMAILEEVFRNALKKKYGSDDNFDIIVNPDKGDLEIW 60
Query: 64 RLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
R VV +V + +ISL AR + ++G VS + MD GR ++ + +Q +I K
Sbjct: 61 RNRVVVADIDVMDPNEEISLTDARKIEDDFEVGEDVSQEVKLMDLGRRSILALRQNLISK 120
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGD 180
+ E + Y +FKD GEI + V + + VI +D ++ ++ +D I + R GD
Sbjct: 121 IHEHDNTIIYKQFKDMEGEIYTAEVHHIRHRAVILLDDEGNEMIMPKDRQIPSDFFRKGD 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
V+ + V + P +++SR P F+ KLF E+PE+++G++ VK V R PG +AK+A
Sbjct: 181 NVRGIVESVELKGNKPTIIMSRASPLFLEKLFEQEIPEVFDGLINVKKVVRIPGEKAKVA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V + D IDPVGACVGM+GSR+ +V EL +E ID++ ++ + F+ AL PA VT V
Sbjct: 241 VDTYDDRIDPVGACVGMKGSRIHGIVRELGNENIDVINYTENITLFITRALSPAKVTSVK 300
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
++E+ R EVI+ E++S AIGR G N+RLA QLTG+ ID++ E + K+F++ +
Sbjct: 301 VNEENKRAEVILKPEEVSKAIGRGGHNIRLAGQLTGYEIDVLREGAEEDVELKEFSDEIE 360
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
++ G + + + ++ + +EET + +E E
Sbjct: 361 AWI---------IEEFHKIGLDTAKSVLEYDVKDLVNRIDLEEETIQHVIDILKEEFEE 410
>gi|297191724|ref|ZP_06909122.1| transcription elongation factor NusA [Streptomyces
pristinaespiralis ATCC 25486]
gi|197721420|gb|EDY65328.1| transcription elongation factor NusA [Streptomyces
pristinaespiralis ATCC 25486]
Length = 331
Score = 283 bits (723), Expect = 6e-74, Method: Composition-based stats.
Identities = 127/340 (37%), Positives = 193/340 (56%), Gaps = 22/340 (6%)
Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70
++ +A EK I D+++ + ++ A G+ RV ++ TG ++++
Sbjct: 6 KLLKGLAQEKEIGFDLLVEAIESALLIAYHRTEGSRRHARVVLDRNTGHVTVWAK----- 60
Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130
E+ L+ ++ P DFGR+A +A+QVI Q++R+AE D
Sbjct: 61 --EDPA---DLEEGQEPK---------EFDDTPSDFGRIAATTARQVIQQRLRDAENDVT 106
Query: 131 YLEFKDKVGEIISGTVKR-VEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYD 188
+ E+ + G++++G V++ + NV+V L + ++ E + E G R+++Y+
Sbjct: 107 FGEYARREGDVVAGMVQQGKDPKNVLVKLDDKLEAILPVQEQVPGEEYTHGLRLRTYVVR 166
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V R RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S +
Sbjct: 167 VARGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEIAAIAREAGHRTKIAVRSTRSGL 226
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307
+P GAC+G G RV+ V+ EL EKIDIV WS D A V NAL PA V+KV + D
Sbjct: 227 NPKGACIGPMGGRVRNVMAELHGEKIDIVDWSDDPAEMVANALSPARVSKVEIVDLGARS 286
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347
V VP QLSLAIG+ GQN RLA++LTGW IDI + E
Sbjct: 287 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEQ 326
>gi|120434526|ref|YP_956870.1| transcription elongation factor NusA [Gramella forsetii KT0803]
gi|117576676|emb|CAL65145.1| transcription elongation protein [Gramella forsetii KT0803]
Length = 410
Score = 283 bits (723), Expect = 6e-74, Method: Composition-based stats.
Identities = 132/419 (31%), Positives = 233/419 (55%), Gaps = 15/419 (3%)
Query: 7 LELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
+E + + ++ + +K IDR +++++ D + A + YG + + +NP+ GD+ ++
Sbjct: 1 MENIALIESFSEFKDDKLIDRVTLMAILEDVFRNALKKKYGEDDNFDIIVNPDKGDLEIW 60
Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
R VV + VE+ +ISL AR +P ++G VS+ + +D GR A+ + +Q +I K
Sbjct: 61 RNRIVVADGEVEDDNREISLAQARKIEPDFEVGEDVSEEVKLVDLGRRAILALRQNLISK 120
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGD 180
+ E + Y +FKD GEI + V + + +I+ D ++ V+ +D I + R G+
Sbjct: 121 IHEHDNTNIYKQFKDLEGEIYTAEVHHIRHRAIILLDDEGNEIVLPKDRQIPSDFFRKGE 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
V+ I V + P +++SRT P F+ KLF E+PE+++G++ +K V R PG +AK+A
Sbjct: 181 NVRGIIESVELKGNKPTIIMSRTAPGFLEKLFEQEIPEVFDGLITIKKVVRVPGEKAKVA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S D IDPVGACVGM+GSR+ ++V EL +E ID++ ++ + F+ AL PA +T +
Sbjct: 241 VDSYDDRIDPVGACVGMKGSRIHSIVRELGNENIDVINFTNNEQLFITRALSPAKITSIK 300
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DE+ EV++ E++S AIGR G N+RLA QLTG+ ID+ E + K+F +
Sbjct: 301 MDEEARTAEVMLKPEEVSKAIGRGGHNIRLAGQLTGYEIDVYREGVEEDVELKEFTD--- 357
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+++ + G + + ++++ +EET ++ R E
Sbjct: 358 ------EIEDWVIAEFSKIGLDTAKAVLEQDVNDLVRRTDLEEETIKDVMAVLRSEFEE 410
>gi|110639790|ref|YP_680000.1| transcription elongation factor NusA [Cytophaga hutchinsonii ATCC
33406]
gi|110282471|gb|ABG60657.1| transcription elongation factor [Cytophaga hutchinsonii ATCC 33406]
Length = 418
Score = 283 bits (723), Expect = 6e-74, Method: Composition-based stats.
Identities = 132/409 (32%), Positives = 231/409 (56%), Gaps = 13/409 (3%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
L++ A KSIDR ++ ++ D + R YGT + V IN + GD+ ++ + E+
Sbjct: 6 LIESFAEFAKFKSIDRPTMMKIVEDVFRTMIRKKYGTDDNFNVIINVDKGDLEIWWMREI 65
Query: 69 VEEVE-------NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
V + + ISL A + + G V+ + DFGR VQ+A+Q +IQK
Sbjct: 66 VSDDFAEDSFDYDPNKHISLTDAHLIEKDFEEGEEVATEVKLEDFGRRMVQTARQTLIQK 125
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
V++ E+D + ++KD VGEII+G + +V +++D ++ + + E I ++ R GD
Sbjct: 126 VKDLEKDNLFQKYKDLVGEIINGEIYQVLSKEILLIDADGNELALPKYEQIPKDRFRKGD 185
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
V++ ++ V P+++LSRT P+F+ +LF +EVPE+Y+G++ ++ + R+PG RAK+A
Sbjct: 186 NVRAIVHRVEMHNGNPKIILSRTSPKFLERLFELEVPEVYDGLISIRNIVREPGERAKVA 245
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S D IDPVGACVGM+GSR+ ++V EL +E ID++ ++ + F+ AL PA ++ +
Sbjct: 246 VESYDDRIDPVGACVGMKGSRIHSIVRELENENIDVINFTDNIDLFIARALSPAKISSLK 305
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
++ D GR V + +Q+SLAIG+ GQN++LAS+L G ID+ E + + +
Sbjct: 306 VEADKGRASVYLKPDQVSLAIGKGGQNIKLASKLVGLEIDVFRELTGNEDNEDVDLTE-- 363
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409
+++ I L G + + + ++ +EET ++
Sbjct: 364 ---FVDEIEDWILEELKRIGLDTAKSVLALSKDDLVRRTELEEETVEDV 409
>gi|291543557|emb|CBL16666.1| transcription termination factor NusA [Ruminococcus sp. 18P13]
Length = 353
Score = 283 bits (723), Expect = 7e-74, Method: Composition-based stats.
Identities = 134/346 (38%), Positives = 197/346 (56%), Gaps = 4/346 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFR 64
+ + E S++ D+++ + ++ KA Y + ++RV+I+P T L
Sbjct: 2 NNDFFAALSLLGAENSVETDLLVEKVKSAMTKAIHRAYPDSGDNVRVDIDPVTKTFDLCI 61
Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
+ VV++ +I++ AR DPS +GG V L R A QSAKQ I +RE
Sbjct: 62 IKTVVDDEPLDDNEINIDQARLIDPSAVVGGTVECKLDTASLSRNAAQSAKQSIRGDLRE 121
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGDRV 182
R+ +F+DK E I+ TV +VE G V L ++ + R+E I E L+ G V
Sbjct: 122 ISRENLLTKFQDKENECITATVSQVEPGRGTVTLIYDKTELYLFRNEQIPGEVLKEGQSV 181
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
K YI + +Q+ P + +SR H + +LF +EVPEIY+G V+V A+SR+ G+R K+AV
Sbjct: 182 KVYITGIANKQKKPIIKISRAHRDLVKRLFELEVPEIYDGTVEVMAISREAGARTKIAVQ 241
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL- 301
S D ++D VGAC+G + SR+ AVV EL EKIDI+ +S F+ AL PA V V +
Sbjct: 242 SHDPNVDAVGACIGPKRSRITAVVNELNGEKIDIINYSDKPEEFIAKALAPAEVLSVTIT 301
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347
D + V+VP QLSLAIG RGQN +LA++LTG+ IDI E E+
Sbjct: 302 DPENRSCTVVVPNNQLSLAIGNRGQNAKLAAKLTGYKIDIKPEFEN 347
>gi|255027177|ref|ZP_05299163.1| transcription elongation factor NusA [Listeria monocytogenes FSL
J2-003]
Length = 301
Score = 283 bits (723), Expect = 7e-74, Method: Composition-based stats.
Identities = 130/281 (46%), Positives = 190/281 (67%)
Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136
+IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER Y EF D
Sbjct: 2 LEISMEEAHKLNPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAERGIIYDEFID 61
Query: 137 KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196
+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+ V + +GP
Sbjct: 62 REDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLTKVEKTTKGP 121
Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256
Q+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++ +DPVGACVG
Sbjct: 122 QIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEEVDPVGACVG 181
Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316
+G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E VIVP Q
Sbjct: 182 PKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQATTVIVPDYQ 241
Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
LSLAIG+RGQN RLA++LTGW IDI +E + N+
Sbjct: 242 LSLAIGKRGQNARLAAKLTGWKIDIKSETVATELGIYPRND 282
>gi|163786551|ref|ZP_02180999.1| transcription elongation factor NusA [Flavobacteriales bacterium
ALC-1]
gi|159878411|gb|EDP72467.1| transcription elongation factor NusA [Flavobacteriales bacterium
ALC-1]
Length = 410
Score = 282 bits (722), Expect = 8e-74, Method: Composition-based stats.
Identities = 134/419 (31%), Positives = 232/419 (55%), Gaps = 15/419 (3%)
Query: 7 LELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
+E + + ++ + +K IDR +++++ D ++ A + YG + + INP+ GD+ ++
Sbjct: 1 MENVALIESFSEFKDDKLIDRVTLMAILEDVLRNALKKKYGDDDNFDIIINPDKGDLEIW 60
Query: 64 RLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
R VV EVE +I L A+ +P ++G V++ + +D GR ++ + +Q +I K
Sbjct: 61 RNRIVVANGEVEEPNQEIELSEAQKIEPDFEVGEDVAEEVKLIDLGRRSILALRQNLISK 120
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGD 180
+ E + Y FK+ GEI + V + + +I+ D ++ ++ +D I + R G+
Sbjct: 121 IHEHDNTNIYKHFKELEGEIYTAEVHHIRHRAIILLDDDGNEIILPKDRQIPSDFFRKGE 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
V+ I V + P +++SRT P F+ KLF E+PE+++G++ VK V R PG +AK+A
Sbjct: 181 NVRGIIESVELKGSKPAIIMSRTSPLFLEKLFEQEIPEVFDGLITVKKVVRIPGEKAKVA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S D IDPVGACVGM+GSR+ +V EL +E ID++ ++ + FV AL PA VT +
Sbjct: 241 VDSYDDRIDPVGACVGMKGSRIHGIVRELGNENIDVINYTNNIQLFVTRALSPARVTSLK 300
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
LDE+ R EV++ E++S AIGR G N+RLA QLTG+ ID+ E + K+F++ +
Sbjct: 301 LDEENMRAEVLLKPEEVSKAIGRGGHNIRLAGQLTGYEIDVFREGAEEDVELKEFSDEIE 360
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
++ G + + ++++ +EET E+ +E E
Sbjct: 361 GWI---------ISEFSKAGLDTAKSILEQDVADLVKRTDLEEETIEEVIRILKEEFED 410
>gi|226306117|ref|YP_002766077.1| transcription elongation protein NusA [Rhodococcus erythropolis
PR4]
gi|229491401|ref|ZP_04385225.1| transcription termination factor NusA [Rhodococcus erythropolis
SK121]
gi|226185234|dbj|BAH33338.1| transcription elongation protein NusA [Rhodococcus erythropolis
PR4]
gi|229321686|gb|EEN87483.1| transcription termination factor NusA [Rhodococcus erythropolis
SK121]
Length = 343
Score = 282 bits (722), Expect = 8e-74, Method: Composition-based stats.
Identities = 131/348 (37%), Positives = 196/348 (56%), Gaps = 32/348 (9%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ A+ EK + + V++ + ++ A R G + R+++N +TG + +
Sbjct: 5 IAALRAIEAEKGVSIETVIATIQTALLTAYRHTEGHKQNARIDVNIKTGSVRVM------ 58
Query: 70 EEVENYTCQISLKVARDRDPSID-IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
A D D + IG D P FGR+A +A+QVI+Q++R+AE +
Sbjct: 59 --------------AHDTDADGNMIGEEWDD--TPEGFGRIAATTARQVILQRLRDAEHE 102
Query: 129 RQYLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETISRENLRPGD 180
R + EF GEI+ G ++R N V+V +G ++G++ E + EN G+
Sbjct: 103 RSFGEFSTHEGEIVGGVIQRDTRANSRGMVVVRIGSESNGAEGLLPPAEQVPGENYEHGE 162
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
R+K Y+ V R RGPQ+ LSRTHP + KLF +EVPEI +G V++ V+R+ G R+K+A
Sbjct: 163 RIKCYVVGVARGARGPQITLSRTHPNLVRKLFALEVPEIADGSVEIINVAREAGHRSKIA 222
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S ++ GAC+G G RV+ V++EL EKIDI+ + D ATFV NAL P+ V V
Sbjct: 223 VASRVQGLNAKGACIGPMGQRVRNVMSELAGEKIDIIDFDEDPATFVGNALSPSKVVSVT 282
Query: 301 -LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347
+D + VIVP QLSLAIG+ GQN RLA++LTGW IDI ++
Sbjct: 283 VVDPEARAARVIVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDAAP 330
>gi|302542143|ref|ZP_07294485.1| transcription termination factor NusA [Streptomyces hygroscopicus
ATCC 53653]
gi|302459761|gb|EFL22854.1| transcription termination factor NusA [Streptomyces himastatinicus
ATCC 53653]
Length = 330
Score = 282 bits (722), Expect = 9e-74, Method: Composition-based stats.
Identities = 122/345 (35%), Positives = 198/345 (57%), Gaps = 23/345 (6%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ + EK I D+++ + ++ A G+ RV+++ +G ++++
Sbjct: 5 MSALRGLVREKEISFDLLVEAIESALLIAYHRTEGSRRRARVQLDRNSGHVTVW------ 58
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGV-VSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
A++ ++ G P FGR+A +AKQVI+Q++R+AE +
Sbjct: 59 --------------AQEDADDLEEGEEPREFDDTPSGFGRIAAMTAKQVILQRLRDAEEE 104
Query: 129 RQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ E+ + G++++G V++ + N++VD+G + ++ E + E+ G R+++Y+
Sbjct: 105 ITFGEYAGREGDVVAGVVQQGKDPKNILVDIGRLEAILPSQEQVPGEDYAHGTRLRTYVV 164
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S
Sbjct: 165 RVVKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEIAAIAREAGHRTKIAVRSTRSG 224
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVG 306
++ GAC+G G RV++V+ EL EKIDIV WS D A V NAL PA V+KV +D
Sbjct: 225 LNAKGACIGPMGGRVRSVMAELHGEKIDIVDWSDDPAELVANALSPARVSKVEVVDLAAR 284
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351
V VP QLSLAIG+ GQN RLA++LTGW IDI + + S ++
Sbjct: 285 SARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTDQSADQ 329
>gi|225012171|ref|ZP_03702608.1| NusA antitermination factor [Flavobacteria bacterium MS024-2A]
gi|225003726|gb|EEG41699.1| NusA antitermination factor [Flavobacteria bacterium MS024-2A]
Length = 410
Score = 282 bits (722), Expect = 9e-74, Method: Composition-based stats.
Identities = 128/419 (30%), Positives = 233/419 (55%), Gaps = 15/419 (3%)
Query: 7 LELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
+E L + D+ + +K IDR ++ ++ D + + +G+ + + INP+ GD+ ++
Sbjct: 1 MENLALIDSFSEFKDDKLIDRVTLMVILEDVFKNTLKRKFGSDENFDIIINPDKGDLEIW 60
Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
R VVE+ VE+ +I+LK AR +P ++G VS+ + +D GR +Q +Q ++ K
Sbjct: 61 RNRVVVEDGMVEDPNQEIALKEARLIEPDFEVGEDVSEEVKLVDLGRRTIQYLRQNLVAK 120
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGD 180
+ E + + +FKD+ GE+ + V + +I +D ++ ++ +D I + R GD
Sbjct: 121 IFEHDSTTIFKQFKDREGELYTAEVHHIRSREIILLDDDGNEIILPKDRQIPSDFFRKGD 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
++ I V P+++LSRT P F+ KLF E+PE+++G++ +K R PG +AK+A
Sbjct: 181 NIRGIIETVELRGNKPRIILSRTSPIFLEKLFEQEIPEVFDGLITIKKAVRIPGEKAKVA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S D IDPVGACVGM+GSR+ +V EL +E ID++ ++ + F+ AL PA V +
Sbjct: 241 VDSYDDRIDPVGACVGMKGSRIHGIVRELGNENIDVINYTNNLQLFIARALSPAKVNSLK 300
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
++E+ R+EV + E++S AIG+ G N+RLA +LTG+ ID+ E + K+F++ +
Sbjct: 301 INEETKRVEVFLNPEEVSKAIGKGGANIRLAGKLTGYEIDVFREGVEEDIELKEFSDEIE 360
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
++ G + + ++ +++ +EET ++ +E E
Sbjct: 361 GWI---------IEEFKKVGLDTAKSILELEKADLIKRTDLEEETVDDVLKILKEEFEE 410
>gi|108799047|ref|YP_639244.1| transcription elongation factor NusA [Mycobacterium sp. MCS]
gi|119868162|ref|YP_938114.1| transcription elongation factor NusA [Mycobacterium sp. KMS]
gi|126434650|ref|YP_001070341.1| transcription elongation factor NusA [Mycobacterium sp. JLS]
gi|108769466|gb|ABG08188.1| NusA antitermination factor [Mycobacterium sp. MCS]
gi|119694251|gb|ABL91324.1| NusA antitermination factor [Mycobacterium sp. KMS]
gi|126234450|gb|ABN97850.1| NusA antitermination factor [Mycobacterium sp. JLS]
Length = 347
Score = 282 bits (722), Expect = 9e-74, Method: Composition-based stats.
Identities = 131/359 (36%), Positives = 198/359 (55%), Gaps = 31/359 (8%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ A+ +K I DVV+ + ++ A R G +D R++I+ ++G + +
Sbjct: 5 MAALHAIEADKGISVDVVVDTIKSALLTAYRHTEGHQADARIDIDRKSGAVKVM------ 58
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
AR+ D ++ D P FGR+A +A+QVI+Q++R+AE ++
Sbjct: 59 --------------ARETDADGNLIQEWDD--TPEGFGRIAATTARQVILQRLRDAENEK 102
Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETISRENLRPGDR 181
Y EF + G+I++G ++R N V+V +G ++GVI E + E GDR
Sbjct: 103 NYGEFSAREGDIVAGVIQRDARANARGLVVVRMGSETKGNEGVIPAAEQVPGERYEHGDR 162
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++ Y+ V R R P + LSRTHP + KLF +EVPEI +G V + AV+R+ G R+K+AV
Sbjct: 163 LRCYVVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEINDGSVDIVAVAREAGHRSKIAV 222
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV- 300
S ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V
Sbjct: 223 ASRVPGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSV 282
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
+DE V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ + D +
Sbjct: 283 IDEQTRAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDAAPPDQHRPDSDAPQ 341
>gi|282879392|ref|ZP_06288135.1| transcription termination factor NusA [Prevotella buccalis ATCC
35310]
gi|281298505|gb|EFA90931.1| transcription termination factor NusA [Prevotella buccalis ATCC
35310]
Length = 421
Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats.
Identities = 141/423 (33%), Positives = 234/423 (55%), Gaps = 13/423 (3%)
Query: 4 ANRLELLQIADAVAYE----KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGD 59
N E + + D E K+IDR ++SV+ +S + +YG+ + V +NP+ GD
Sbjct: 5 KNVEETISMIDTF-REFKDTKNIDRATLVSVLEESFRNVLAKIYGSDENFDVIVNPDKGD 63
Query: 60 ISLFRLLEVVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117
++R VV + E + +ISLK AR+ + + G VS+ + FGR A+ + +Q
Sbjct: 64 FEIYRNRIVVPDGEVADENKEISLKEAREIEDDYEEGEEVSEQIDFAKFGRRAILNLRQT 123
Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENL 176
+ KV E E D Y ++KD+VG++ISG V + + ++VD N++ ++ + E I +
Sbjct: 124 LKSKVLELEHDSLYNKYKDRVGQVISGEVYQIWKREVLLVDDENNELILPKSEQIPADQY 183
Query: 177 RPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236
R G+ +++ I V E P+++LSRT P F+ +L EVPEI +G++ +K ++R PG R
Sbjct: 184 RKGETIRAVILRVDNENNNPKIILSRTSPVFLERLLEAEVPEINDGLISIKKIARMPGER 243
Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296
AK+AV S D IDPVGACVG++GSRV +V EL +E ID++ ++ + F+ AL PA +
Sbjct: 244 AKVAVESYDDRIDPVGACVGVKGSRVHGIVRELCNENIDVINYTSNIKLFIQRALSPARI 303
Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356
+ + LDE+ + EV + E++SLAIGR G N++LAS LT +TID+ E D+ + +
Sbjct: 304 SSINLDEENRKAEVYLQPEEVSLAIGRGGLNIKLASMLTEFTIDVYREVSDADADEDIYL 363
Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416
E +D+ I + G +++ + +EET + +
Sbjct: 364 EEFND-----EIDQWIIDAIKGIGLDTAKQVLNAPREMLIEKADLEEETVDHLIRVLKSE 418
Query: 417 LEG 419
E
Sbjct: 419 FEQ 421
>gi|307331528|ref|ZP_07610641.1| transcription termination factor NusA [Streptomyces violaceusniger
Tu 4113]
gi|306882845|gb|EFN13918.1| transcription termination factor NusA [Streptomyces violaceusniger
Tu 4113]
Length = 330
Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats.
Identities = 127/341 (37%), Positives = 196/341 (57%), Gaps = 23/341 (6%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ + EK I D+++ + ++ A G+ RVE+N +TG ++++
Sbjct: 5 MSALRGLVREKEISFDLLVEAIESALLIAYHRTDGSRRRARVELNRDTGHVTVW------ 58
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGV-VSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
AR+ ++ G P FGR+A +AKQVI+Q++R+AE +
Sbjct: 59 --------------AREDAEDLEEGQEPREFDDTPSGFGRIAATTAKQVILQRLRDAEEE 104
Query: 129 RQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ E+ + G++++G V++ + NV+VD+G + ++ E + E+ G R+++Y+
Sbjct: 105 ITFGEYAGREGDVVAGVVQQGKDPKNVLVDIGRLEAILPVQEQVPGEDYAHGTRLRTYVV 164
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S
Sbjct: 165 RVVKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEIAAIAREAGHRTKIAVRSTRSG 224
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVG 306
++ GAC+G G RV++V+ EL EKIDIV WS D A V NAL PA V+KV +D
Sbjct: 225 LNAKGACIGPMGGRVRSVMAELHGEKIDIVDWSDDPADLVANALSPARVSKVEVVDLAAR 284
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347
V VP QLSLAIG+ GQN RLA++LTGW IDI + E
Sbjct: 285 SARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEQ 325
>gi|298372250|ref|ZP_06982240.1| transcription termination factor NusA [Bacteroidetes oral taxon 274
str. F0058]
gi|298275154|gb|EFI16705.1| transcription termination factor NusA [Bacteroidetes oral taxon 274
str. F0058]
Length = 417
Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats.
Identities = 120/404 (29%), Positives = 220/404 (54%), Gaps = 9/404 (2%)
Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77
K+ID +LS++ ++ +K ++YG+ + NP+ GD ++R VVE+ VE+
Sbjct: 20 KNIDNSTMLSILEEAFRKVISNIYGSDQNYDFIFNPDKGDFEIWRNRIVVEDDKVEDPHL 79
Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137
+ISL AR ++G V + + FGR AV + Q++ K+ + ++D Y ++
Sbjct: 80 EISLSDARKIADDYEVGEEVQEQVDINSFGRRAVLNLSQILSAKIVDVQKDSLYTKYSQL 139
Query: 138 VGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196
+G+IIS V +V +++ D N++ ++ + + + + + G+ +++ + V P
Sbjct: 140 LGQIISAEVYQVWKKEILLLDDNNNEILLPKADQLPNDFFKKGEIIRAVVARVDNNNNNP 199
Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256
++ +SRT P F+ +L EVPEI +G++ +K + R PG +AK+AV S D IDPVGACVG
Sbjct: 200 KIYVSRTLPLFLERLLEREVPEIQDGLITIKKIVRLPGEKAKIAVESYDDRIDPVGACVG 259
Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316
+RG+R+Q ++ EL E ID++ ++ + + ++ AL PA VT +V+D + R V + E
Sbjct: 260 IRGNRIQPIIRELNKESIDVINYTSNPSLYIARALAPAKVTSIVIDNENKRANVYINPED 319
Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376
+S AIG+ G N++LA QLTG+ I+II + + ++ +DE + +L
Sbjct: 320 ISSAIGKNGANIKLAIQLTGYHIEIIRGDVEIDEEDIFLDDFAD------EIDEWVIDIL 373
Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
G +++ + E+ +EET + + E
Sbjct: 374 KNIGCDTAKQVLRLTREELIERTDLEEETVDYVIKVLKTEFEKD 417
>gi|326382939|ref|ZP_08204629.1| transcription elongation factor NusA [Gordonia neofelifaecis NRRL
B-59395]
gi|326198529|gb|EGD55713.1| transcription elongation factor NusA [Gordonia neofelifaecis NRRL
B-59395]
Length = 347
Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats.
Identities = 129/354 (36%), Positives = 201/354 (56%), Gaps = 31/354 (8%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ + +K + + VLS + ++ A R G + R++I+ ++G + +
Sbjct: 5 ISALRLIEADKGVPAETVLSAIETALLTAYRHTDGFAPNARIDIDRKSGQVRVM------ 58
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
A++ D ++ V P FGR+A +A+QVI+Q++R+AE ++
Sbjct: 59 --------------AQELDEDRNV--VHEWDDTPEGFGRIAATTARQVILQRLRDAENEK 102
Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDR 181
Y E GE++ G V+ N VIV +G+ ++GVI E + E+ + GDR
Sbjct: 103 NYGELVAHEGEVVGGIVQADAKANARGMVIVQIGSDSNATEGVIPPAEQVPGESYKHGDR 162
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K Y+ V R RGPQ+ LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV
Sbjct: 163 IKCYVVGVARGSRGPQITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV 222
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV- 300
+ + ++ GAC+G G RV+ V++EL EKIDI+ ++ D A FV +AL PA V V
Sbjct: 223 HTGVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYATDPAEFVGHALSPAKVVSVTV 282
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354
+D++ VIVP QLSLAIG+ GQN RLA++LTGW IDI ++ D R +
Sbjct: 283 IDQETKAARVIVPDYQLSLAIGKEGQNARLAARLTGWRIDIRSDAGDGGPRDTE 336
>gi|262037365|ref|ZP_06010830.1| transcription termination factor NusA [Leptotrichia goodfellowii
F0264]
gi|261748622|gb|EEY35996.1| transcription termination factor NusA [Leptotrichia goodfellowii
F0264]
Length = 365
Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats.
Identities = 125/346 (36%), Positives = 199/346 (57%), Gaps = 3/346 (0%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
M S ++ L+ D + EK I ++ +L + ++ A + YG + + IN ETG++
Sbjct: 1 MKSKDQRVFLEALDELEKEKGIIKEELLEAVETALLAAYKKNYGDKDNAEISINRETGEV 60
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
+F +V+ VE +ISL+ A +GG + + +F R A+Q+AKQ+I+Q
Sbjct: 61 KVFSRKTIVQTVEKPEEEISLEDAIALKKKSKLGGTIDFEINAENFKRNAIQNAKQIIVQ 120
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPG 179
KVRE E+ + FK I+S V++ E GN+ +D+ + ++ E + G
Sbjct: 121 KVRECEKKNIFNRFKQIEKSIVSAVVRKTDEKGNLYIDINGLEAIVPEKELSEADKFIQG 180
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
DR+K Y+ V + + LSR + M L ++E+PEI +G +Q+K ++R+ GSR K+
Sbjct: 181 DRLKVYVGAVEESTKYTKCFLSRKVEELMRGLLNLEIPEIEDGTIQIKQIAREAGSRTKI 240
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV+S D ++D GAC+G G R+Q+++ EL+ EK+D+V+W D FV NAL PA V V
Sbjct: 241 AVYSDDPNLDVKGACIGKSGMRIQSIIDELKGEKVDVVLWDEDIRYFVKNALNPAEVISV 300
Query: 300 VLDED--VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343
+ E+ V V +EQLSLAIG++GQN RLA++L G IDI T
Sbjct: 301 EIIEEDGEQIARVEVDEEQLSLAIGKKGQNSRLAARLCGIKIDIHT 346
>gi|198277417|ref|ZP_03209948.1| hypothetical protein BACPLE_03631 [Bacteroides plebeius DSM 17135]
gi|198269915|gb|EDY94185.1| hypothetical protein BACPLE_03631 [Bacteroides plebeius DSM 17135]
Length = 419
Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats.
Identities = 139/422 (32%), Positives = 235/422 (55%), Gaps = 10/422 (2%)
Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD
Sbjct: 2 AKKEETVSLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61
Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
++R EVV EE+ N QI+L AR D S ++G V+D + FGR A+ + +Q +
Sbjct: 62 EIWRNREVVADEELTNPNLQIALSEARKIDASYEVGEEVTDEVIFEKFGRRAILNLRQTL 121
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLR 177
K+ E E+D Y ++ DKVG +IS V ++ +++ D ++ ++ + E I + R
Sbjct: 122 ASKILELEKDSLYNKYIDKVGTVISAEVYQIWKKEILLLDDEGNELLLPKTEQIPSDFYR 181
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
G+ ++ + V + P+++LSRT P F+ +LF EVPEI +G++ +K ++R PG RA
Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEQEVPEINDGLITIKKIARIPGERA 241
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + F+ AL PA V+
Sbjct: 242 KIAVESYDERIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKVS 301
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
+++ ED R EV + E++SLAIG+ G N++LAS LT +TID+ E + +D
Sbjct: 302 SIIMHEDEKRAEVYLKPEEVSLAIGKGGLNIKLASMLTEYTIDVYRELGEDAVADEDIY- 360
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
+DE + + + A G + + + +E T ++ +
Sbjct: 361 ---LDEFKDEIDEWVINAIKAIGIDTAKGVLNAPREMLIEKADLEENTVDDVLRILKAEF 417
Query: 418 EG 419
E
Sbjct: 418 EE 419
>gi|227875842|ref|ZP_03993968.1| transcription elongation factor NusA [Mobiluncus mulieris ATCC
35243]
gi|269977478|ref|ZP_06184450.1| transcription termination factor NusA [Mobiluncus mulieris 28-1]
gi|306819123|ref|ZP_07452837.1| transcription termination factor NusA [Mobiluncus mulieris ATCC
35239]
gi|307700036|ref|ZP_07637085.1| transcription termination factor NusA [Mobiluncus mulieris
FB024-16]
gi|227843590|gb|EEJ53773.1| transcription elongation factor NusA [Mobiluncus mulieris ATCC
35243]
gi|269934394|gb|EEZ90956.1| transcription termination factor NusA [Mobiluncus mulieris 28-1]
gi|304648099|gb|EFM45410.1| transcription termination factor NusA [Mobiluncus mulieris ATCC
35239]
gi|307614797|gb|EFN94017.1| transcription termination factor NusA [Mobiluncus mulieris
FB024-16]
Length = 327
Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats.
Identities = 130/337 (38%), Positives = 199/337 (59%), Gaps = 24/337 (7%)
Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71
V EK +D + +++ + +++ KA R+ G + RVE++ +TG++ ++ V E
Sbjct: 7 ALRLVEAEKGMDFESLVATVEEALLKAYRNQSGVKAPARVEVDRKTGEVKVW-----VTE 61
Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131
++ +G V + P DFGR A + K VIIQ+ +E E +
Sbjct: 62 LDEEGN--------------ALGDV---EVTPEDFGRTAAATVKSVIIQRFQEEEDKQVL 104
Query: 132 LEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190
+FK+++G+++SG V + + VDLG+ +GVI E E+ R G+R++ Y+
Sbjct: 105 GDFKERIGQVVSGVVVAARDPKFIAVDLGDIEGVIPPAEQAPGEHFRDGERIRVYVLSAA 164
Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250
R +GP + LSRTHP + LF+ EVPEI G+V +++V+R+PG R K+AV + + ++P
Sbjct: 165 RGMKGPHIELSRTHPGLVQGLFNREVPEIEKGLVVIESVAREPGHRTKIAVRALEKGMNP 224
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIE 309
GAC+G GSRV+AV+ EL EKIDI+ WS + F+ NAL PA V V + DED
Sbjct: 225 KGACIGPNGSRVRAVMNELNGEKIDIIDWSDNPVEFIANALSPAKVVSVRVLDEDRRLAR 284
Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346
V+VP Q SLAIG+ GQN RLAS+LTGW IDI ++ E
Sbjct: 285 VVVPDFQQSLAIGKEGQNARLASRLTGWGIDIHSDSE 321
>gi|296129355|ref|YP_003636605.1| transcription termination factor NusA [Cellulomonas flavigena DSM
20109]
gi|296021170|gb|ADG74406.1| transcription termination factor NusA [Cellulomonas flavigena DSM
20109]
Length = 364
Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats.
Identities = 126/341 (36%), Positives = 197/341 (57%), Gaps = 7/341 (2%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+Q + E+ I DV++ + ++ A G S RVE++ TG ++++
Sbjct: 5 MQALRLIEREREISLDVLVEAIEQALLSAYHRTPGARSRARVELDRRTGHVTVWARDPAP 64
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
E + VA P + P FGR+A +A+QVI+Q++R+AE D+
Sbjct: 65 EAPAPEVAEDGTVVAVAPAPEMP-----EYDDTPEGFGRIATATARQVIVQRLRDAEDDQ 119
Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
F+ K GE++ G +++ + V+VD+G + V+ E + E G+R+++++ +
Sbjct: 120 VLGTFRSKAGEVLGGVIQQGRDPRTVLVDVGGVEAVLPAHEQVPGERYVHGERLRAFVLE 179
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V R QRGPQ+ LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV ++ + +
Sbjct: 180 VARGQRGPQITLSRTHPNLVRKLFALEVPEIADGTVEITAMAREAGHRTKMAVRANVAGV 239
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV-TKVVLDEDVGR 307
+ GAC+G G RV+AV+ EL EKIDIV S D A + +AL PA V V+D
Sbjct: 240 NAKGACIGPMGGRVRAVMAELHGEKIDIVDHSDDPAEMIAHALSPARVLDVRVVDAAARA 299
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ E +
Sbjct: 300 ARVVVPDYQLSLAIGKEGQNARLAAKLTGWRIDIRSDAEPA 340
>gi|319790652|ref|YP_004152285.1| NusA antitermination factor [Thermovibrio ammonificans HB-1]
gi|317115154|gb|ADU97644.1| NusA antitermination factor [Thermovibrio ammonificans HB-1]
Length = 380
Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats.
Identities = 139/361 (38%), Positives = 215/361 (59%), Gaps = 20/361 (5%)
Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV 72
+ + EK I ++ V+ + I AA+ G D+ V+I+ + D +++ +VVEEV
Sbjct: 8 IELLCKEKGISKEDVIEAVKVGIINAAKKA-GYRGDLVVKIDEDGKDFGIYQRKKVVEEV 66
Query: 73 ENYTCQISLKVARDRDPS-IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131
+ +ISL+ AR+ + +G V + + GR+A ++A QVI K+ EAER +
Sbjct: 67 TDPDHEISLEEARELFGDQVKLGDEVLIEIKTEELGRIAAKAAAQVIHDKITEAERRALF 126
Query: 132 LEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190
F+ K+G++ISGTVK ++ +++VDLG GV+ ++E I +E R GDRV++YIYDV
Sbjct: 127 DYFRQKIGDVISGTVKEIKRNGDIVVDLGRVIGVLPKEEQIPKERYRIGDRVRAYIYDVV 186
Query: 191 REQRGP--------------QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236
+ + V+LSRTHP+ + +L +E+PE+ G+V+VKAV+R+PG R
Sbjct: 187 FDYKRYNRKKPSRIDDYPPPYVILSRTHPKLLKRLMEIEIPEVAEGLVEVKAVAREPGVR 246
Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296
AK+AV S + IDPVGAC+G++GSR+ + EL EKI+I+ WS D A V AL PA V
Sbjct: 247 AKVAVDSKEDYIDPVGACIGVKGSRILPISRELSGEKIEIIRWSDDVAELVARALSPAKV 306
Query: 297 TKVVLDEDVG---RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353
+ ED R+EV+VP +QLSLAIG+ G N RLAS+L G ++ + + +
Sbjct: 307 IQAESYEDENGEFRVEVVVPDDQLSLAIGKHGVNARLASKLAGQAGHVVGIDIIKESDYR 366
Query: 354 D 354
Sbjct: 367 K 367
>gi|238916823|ref|YP_002930340.1| N utilization substance protein A [Eubacterium eligens ATCC 27750]
gi|238872183|gb|ACR71893.1| N utilization substance protein A [Eubacterium eligens ATCC 27750]
Length = 381
Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats.
Identities = 135/380 (35%), Positives = 228/380 (60%), Gaps = 14/380 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
EL+ DA+ E ID++++ + + S+ ++ + + RVE++ TGD ++
Sbjct: 2 NKELIMALDALEKENGIDKEIMFAAIEKSLMDEYKAEFDKADNGRVELDRRTGDFHIYSD 61
Query: 66 LEVVEEVENYT------------CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQS 113
VVEEV I+L+ AR P +G V++ + +F R A ++
Sbjct: 62 RTVVEEVIVPENRENKKEKYVSGTDIALEDARKIKPDCQLGDVITVEVKSEEFSRKAAKN 121
Query: 114 AKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETIS 172
AK I+Q +RE E++ Y E+ K E+I+G V+RV + G++ +DLG V++ D+
Sbjct: 122 AKNTIVQTIREQEKNALYNEYHSKEKELITGIVQRVADNGDLTIDLGRLQTVLKADDKFK 181
Query: 173 RENLRPGDRVKSYIYDVRREQRGPQV-LLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSR 231
+ PGDR+K Y+ DV ++G V +SR + + KLF EV EI +G+V++ ++R
Sbjct: 182 DKKFVPGDRIKLYVVDVINREKGGPVVRVSRKSQELVKKLFEEEVTEIKDGVVEIMGIAR 241
Query: 232 DPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINAL 291
+ GSR K+AV ++ +++DPVGACVG+ G+RV+A+V EL +E+IDI+ W +SA ++NAL
Sbjct: 242 EAGSRTKMAVRANVANVDPVGACVGINGARVKAIVNELGNEQIDIIEWDSNSAQLIVNAL 301
Query: 292 RPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351
PA V V D++ + +++V ++QLSLAIG++GQNVRLA++LTG+ IDI +E E +
Sbjct: 302 SPAKVVSAVADDEEKKAKIVVSEQQLSLAIGKQGQNVRLAAKLTGYGIDIKSEAEPEEHT 361
Query: 352 QKDFNERTQFFMQAINVDEI 371
+++ E +++DE
Sbjct: 362 EEENLEEEYVEPSELSLDEE 381
>gi|297156812|gb|ADI06524.1| transcription elongation factor NusA [Streptomyces bingchenggensis
BCW-1]
Length = 330
Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats.
Identities = 127/341 (37%), Positives = 194/341 (56%), Gaps = 23/341 (6%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ + EK I D+++ + ++ A G+ RVE++ TG ++++
Sbjct: 5 MSALRGLVREKEISFDLLVEAIESALLIAYHRTEGSRRRARVELDRATGHVTVW------ 58
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGV-VSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
AR+ + G P FGR+A +AKQVI+Q++R+AE +
Sbjct: 59 --------------AREDAEDLAEGEEPREFDDTPSGFGRIAAMTAKQVILQRLRDAEEE 104
Query: 129 RQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ E+ + G++++G V++ + NV+VD+G + ++ E + E+ G R++SY+
Sbjct: 105 ITFGEYAGREGDVVTGVVQQGKDPKNVLVDIGRLEAILPVQEQVPGEDYAHGTRLRSYVV 164
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S
Sbjct: 165 RVVKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEIAAIAREAGHRTKIAVRSTRSG 224
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVG 306
++ GAC+G G RV++V+ EL EKIDIV WS D A V NAL PA V+KV +D
Sbjct: 225 LNAKGACIGPMGGRVRSVMAELHGEKIDIVDWSDDPAELVANALSPARVSKVEVVDMGAR 284
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347
V VP QLSLAIG+ GQN RLA++LTGW IDI + E
Sbjct: 285 SARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEQ 325
>gi|260905192|ref|ZP_05913514.1| transcription elongation protein NusA [Brevibacterium linens BL2]
Length = 320
Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats.
Identities = 124/336 (36%), Positives = 193/336 (57%), Gaps = 24/336 (7%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
L + + E+ I D ++ ++ ++ A + G D R E++ TG++ + +
Sbjct: 5 LSVLRIIEREREIPLDTLIELIEQALFLAYQKTEGAWPDSRAELDKSTGEVRILAV---- 60
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
E +N I P FGR+A Q+A+QVI Q++R+ E +
Sbjct: 61 -EFDNDDNPIG-----------------EFDDTPTGFGRIAAQTARQVIHQRLRDVEDES 102
Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
FK + GEI+SGT+++ + V VDLG+ + V+ E + E+ R G R++ YI D
Sbjct: 103 VLGNFKGREGEIVSGTIQQGRDPQMVQVDLGDVEAVLPPHEQVPGESYRHGTRLRVYIAD 162
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V + +G V +SRTHP + +LF E PEI +G V++ +++R+ G R KLAV ++ +
Sbjct: 163 VHKGPKGTSVTVSRTHPNLVRRLFAHEAPEIADGTVEIVSLAREAGHRTKLAVRATKPGV 222
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307
+ G+C+G GSRV+AV+ EL EKIDIV +S D A F+ +AL PA +KV + D D+
Sbjct: 223 NAKGSCIGELGSRVRAVMNELGQEKIDIVDYSDDPAKFIGHALSPAKASKVDILDPDLQE 282
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343
IVP++QLSLAIG+ GQN RLA++LTGW IDI+
Sbjct: 283 SRAIVPRDQLSLAIGKEGQNARLAAKLTGWKIDIVP 318
>gi|220912195|ref|YP_002487504.1| NusA antitermination factor [Arthrobacter chlorophenolicus A6]
gi|219859073|gb|ACL39415.1| NusA antitermination factor [Arthrobacter chlorophenolicus A6]
Length = 326
Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats.
Identities = 121/337 (35%), Positives = 199/337 (59%), Gaps = 24/337 (7%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ + E+ I D+++ + ++ A G R E++ ++G ++++ +
Sbjct: 5 MSALRLLEREREIPLDLLIPTIEQALLVAYHKSPGAFEKARAELDRKSGHVTIWAV---- 60
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
E+++ I P FGR+A +A+Q+I+Q++R+ E D
Sbjct: 61 -EIDDDGAPIG-----------------EFEDTPAGFGRIAASTARQIILQRLRDVEDDN 102
Query: 130 QYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
EFK + GE++SGT+++ ++I V+LG+ + ++ E + E G+R+++ + D
Sbjct: 103 VLGEFKGREGELVSGTIQQGNNPHMIQVNLGSLEALLPPPEQVPGEKYIHGNRLRALVID 162
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V R +GP V LSR+HP + KLF +EVPEI + V++ A++R+ G R K+AV ++ S I
Sbjct: 163 VHRGTKGPSVTLSRSHPGLVRKLFELEVPEIADHSVEIVALAREAGHRTKIAVKANASGI 222
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307
+ GAC+G GSRV+AV+TEL DEKIDIV +S + ATF+ +AL P+ V V + DE
Sbjct: 223 NAKGACIGEMGSRVRAVMTELNDEKIDIVDFSENPATFIASALSPSRVNSVTITDEATRS 282
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344
V+VP QLSLAIG+ GQN RLA++LTGW IDI+++
Sbjct: 283 ARVVVPDYQLSLAIGKEGQNARLAAKLTGWRIDIVSD 319
>gi|282861439|ref|ZP_06270504.1| NusA antitermination factor [Streptomyces sp. ACTE]
gi|282564097|gb|EFB69634.1| NusA antitermination factor [Streptomyces sp. ACTE]
Length = 343
Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats.
Identities = 129/344 (37%), Positives = 199/344 (57%), Gaps = 22/344 (6%)
Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70
++ +A +K I DV++ + ++ A G+ RVE++ G ++++
Sbjct: 6 KLLKGLAQDKEIPFDVLVGAIESALLIAYHRTEGSHRRARVELD-AAGHVTVWAK----- 59
Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130
E+ + A++ D P FGR+A +AKQVI+Q++R+AE DR
Sbjct: 60 --EDPADLEEGQEAKEFDD------------TPSGFGRIAASTAKQVILQRLRDAEDDRT 105
Query: 131 YLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDV 189
+ E+ G++++G V++ + NV+VD+G + ++ E + E G R+++Y+ V
Sbjct: 106 FGEYAGHEGDVVTGLVQQGKDPKNVLVDIGKLEAILPVQEQVPGEEYTHGLRLRTYVVRV 165
Query: 190 RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSID 249
+ RGP V LSRTHP + KLF +EVPEI +G V ++A++R+ G R K+AV S+ + ++
Sbjct: 166 AKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVVIEAIAREAGHRTKIAVRSTRAGLN 225
Query: 250 PVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRI 308
P GAC+G GSRV+ V+ EL EKIDIV WS D A V NAL PA V++V +D
Sbjct: 226 PKGACIGPMGSRVRNVMAELHGEKIDIVDWSDDPAEMVANALSPARVSEVEVVDLGARSA 285
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
V VP QLSLAIG+ GQN RLA++LTGW IDI + E R+
Sbjct: 286 RVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTETDEERE 329
>gi|160943264|ref|ZP_02090500.1| hypothetical protein FAEPRAM212_00750 [Faecalibacterium prausnitzii
M21/2]
gi|158445503|gb|EDP22506.1| hypothetical protein FAEPRAM212_00750 [Faecalibacterium prausnitzii
M21/2]
gi|295105168|emb|CBL02712.1| transcription termination factor NusA [Faecalibacterium prausnitzii
SL3/3]
Length = 368
Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats.
Identities = 145/367 (39%), Positives = 221/367 (60%), Gaps = 8/367 (2%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-IRVEINPETGD 59
M +AN+ + + + +E+ I + ++ + +I A + Y D IRV+I+P+TG
Sbjct: 1 MTAANK-DFFEALSMLEHERGITAEYLIEKIKAAIIIAVKKNYEVEEDHIRVDIDPDTGR 59
Query: 60 ISLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117
+ + ++V E+ + +I + AR S ++G + PL DFGR+A Q+AK V
Sbjct: 60 FDVALIQDIVADEDWYDEHAEIGVTEARKIRSSYEVGDRIITPLKTRDFGRIAAQTAKHV 119
Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV--DLGNS-DGVIRRDETISRE 174
I Q +REAER++Q E + + +I+ TV RV+ IV DLG + V+ R+E + E
Sbjct: 120 IRQGIREAERNQQLSEIQSRAHDIVQATVTRVDTEKGIVALDLGKGGEAVLPRNEQVPGE 179
Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234
G+ ++ YI DV +RGP+V++SRTHP + +LF +EVPEI++G V+VKA+SR+ G
Sbjct: 180 VYTEGETLQVYIVDVVSTERGPRVMISRTHPGLVKRLFELEVPEIFDGTVEVKAISREAG 239
Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294
+R K+AV+S D +++PV AC+G G+RV AVV +L EKIDIV WS D + F+ AL PA
Sbjct: 240 ARTKMAVWSKDPNVNPVSACIGEHGARVAAVVEKLGGEKIDIVKWSEDISEFISAALSPA 299
Query: 295 IVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353
V KV L + V VP +QLSLAIG +GQN RL ++LTG+ IDI E ++
Sbjct: 300 KVVKVELLPGETRSCRVTVPDQQLSLAIGNKGQNARLCARLTGYNIDIRPESGYYGEDEE 359
Query: 354 DFNERTQ 360
+ T
Sbjct: 360 PKKDATD 366
>gi|145224621|ref|YP_001135299.1| transcription elongation factor NusA [Mycobacterium gilvum PYR-GCK]
gi|315444953|ref|YP_004077832.1| transcription termination factor NusA [Mycobacterium sp. Spyr1]
gi|145217107|gb|ABP46511.1| NusA antitermination factor [Mycobacterium gilvum PYR-GCK]
gi|315263256|gb|ADT99997.1| transcription termination factor NusA [Mycobacterium sp. Spyr1]
Length = 353
Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats.
Identities = 132/367 (35%), Positives = 196/367 (53%), Gaps = 31/367 (8%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ A+ +K I DVV+ + ++ A R G +D ++I+ +TG + +
Sbjct: 5 MAALHAIEADKGITVDVVVETIKSALLTAYRHTEGHEADAHIDIDRKTGVVKVM------ 58
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
AR D ++ + P FGR+A +A+QVI+Q++R+AE ++
Sbjct: 59 --------------ARQTDEDGNV--LHEWDDTPEGFGRIAATTARQVILQRLRDAENEK 102
Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETISRENLRPGDR 181
Y EF + G+I++G ++R N V+V +G S+GVI E + E GDR
Sbjct: 103 NYGEFSAREGDIVAGVIQRDARANARGLVVVRMGSETKGSEGVIPAAEQVPGERYEHGDR 162
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV
Sbjct: 163 LRCYVVGVARGAREPVITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV 222
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV- 300
S ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V
Sbjct: 223 TSRAPGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVTV 282
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DE VIVP QLSLAIG+ GQN RLA++LTGW IDI +++ D
Sbjct: 283 IDEAARAARVIVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDDADKNGGDGPGGHDRS 342
Query: 361 FFMQAIN 367
Sbjct: 343 ASRPDAG 349
>gi|91200793|emb|CAJ73846.1| strongly similar to transcription elongation protein NusA
[Candidatus Kuenenia stuttgartiensis]
Length = 357
Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats.
Identities = 142/383 (37%), Positives = 229/383 (59%), Gaps = 32/383 (8%)
Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
++ LL++ D++ +K I ++VV + ++ AA+ + + + ++I+ +TG+I
Sbjct: 1 MDKENLLRLVDSLHRDKEIAKEVVFQGIEAALITAAKKHFRSQEAVSIQIDRKTGEI--- 57
Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
++++ R DPS + GR+ Q+AKQVIIQK+R
Sbjct: 58 ---------------VAMEGDRKIDPS--------------ELGRITAQTAKQVIIQKIR 88
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183
EAERD + +F + G I+SG V+R E +IV+LG ++GV+++ E + E+ G+RV+
Sbjct: 89 EAERDVIFEDFCKRKGVIVSGKVQRFEGATMIVNLGKTEGVLQKSEQTANEHYTIGERVR 148
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+ I DV++ ++ LSRTHP F+ KLF +EVPEI +++KA++R+ G R+K+AV S
Sbjct: 149 AVILDVKKVGTRVKITLSRTHPDFVRKLFELEVPEIAENTIEIKALAREAGQRSKIAVAS 208
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
SD ++D VGACVGMRGSR++ +V EL EKIDI+ WS + + NAL+PA V+ ++L
Sbjct: 209 SDENVDCVGACVGMRGSRIKNIVDELNGEKIDIIRWSEEPELLLPNALKPAEVSGIILSP 268
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
+ ++VP +QLSLAIG+RGQNVRLAS+LT W IDIIT+ E ++ D E +
Sbjct: 269 ENRTATIVVPNDQLSLAIGKRGQNVRLASRLTEWNIDIITDAEFEKRQKADDLELAEVAD 328
Query: 364 QAINVDEIIAHLLVAEGFADVEE 386
++ VA ++ +
Sbjct: 329 ANNVSTNDLSGKNVAATNSEYND 351
>gi|226366090|ref|YP_002783873.1| transcription elongation factor NusA [Rhodococcus opacus B4]
gi|226244580|dbj|BAH54928.1| transcription elongation protein NusA [Rhodococcus opacus B4]
Length = 343
Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats.
Identities = 129/349 (36%), Positives = 197/349 (56%), Gaps = 32/349 (9%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ A+ +K I + V+S + ++ A R G R++++ ++G + +
Sbjct: 5 IAALRAIEADKGISIETVISTIQTALLTAYRHTEGHQQHARIDVDTKSGIVRVM------ 58
Query: 70 EEVENYTCQISLKVARDRDPSID-IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
A D D + +G D P FGR+A +A+QVI+Q++R+AE +
Sbjct: 59 --------------AHDVDSDGNMVGEEWDD--TPEGFGRIAATTARQVILQRLRDAEHE 102
Query: 129 RQYLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETISRENLRPGD 180
R + E+ GEI+ G ++R N V+V +G ++G+I E + EN G+
Sbjct: 103 RSFGEYSTHEGEIVGGVIQRDTRANSRGMVVVRIGSEASGAEGLIPPAEQVPGENYEHGE 162
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
R+K Y+ V R QRGPQ+ LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+A
Sbjct: 163 RLKCYVVGVARGQRGPQITLSRTHPNLVRKLFALEVPEIADGSVEIIAVAREAGHRSKIA 222
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL P+ V V
Sbjct: 223 VQSRVQGLNAKGACIGPMGQRVRNVMSELAGEKIDIIDFDEDPARFVGNALSPSKVVSVT 282
Query: 301 -LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
+D + V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ +
Sbjct: 283 VVDPEARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDAAPA 331
>gi|111023601|ref|YP_706573.1| transcription elongation factor NusA [Rhodococcus jostii RHA1]
gi|110823131|gb|ABG98415.1| transcription elongation protein NusA [Rhodococcus jostii RHA1]
Length = 343
Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats.
Identities = 130/349 (37%), Positives = 197/349 (56%), Gaps = 32/349 (9%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ A+ +K I + V+S + ++ A R G R++++ ++G + +
Sbjct: 5 IAALRAIEADKGISIETVISTIQTALLTAYRHTEGHQQHARIDVDTKSGIVRVM------ 58
Query: 70 EEVENYTCQISLKVARDRDPSID-IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
A D D + +G D P FGR+A +A+QVI+Q++R+AE +
Sbjct: 59 --------------AHDVDADGNMVGEEWDD--TPEGFGRIAATTARQVILQRLRDAEHE 102
Query: 129 RQYLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETISRENLRPGD 180
R + E+ GEI+ G ++R N V+V +G ++G+I E + EN G+
Sbjct: 103 RSFGEYSTHEGEIVGGVIQRDTRANSRGMVVVRIGSEASGAEGLIPPAEQVPGENYEHGE 162
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
R+K Y+ V R QRGPQ+ LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+A
Sbjct: 163 RLKCYVVGVARGQRGPQITLSRTHPNLVRKLFALEVPEIADGSVEIIAVAREAGHRSKIA 222
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL P+ V V
Sbjct: 223 VQSRVQGLNAKGACIGPMGQRVRNVMSELAGEKIDIIDFDEDPARFVGNALSPSKVVSVT 282
Query: 301 -LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
+D D V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ +
Sbjct: 283 VVDPDARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDAAPA 331
>gi|86131975|ref|ZP_01050571.1| transcription elongation protein NusA [Dokdonia donghaensis MED134]
gi|85817309|gb|EAQ38489.1| transcription elongation protein NusA [Dokdonia donghaensis MED134]
Length = 410
Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats.
Identities = 124/419 (29%), Positives = 231/419 (55%), Gaps = 15/419 (3%)
Query: 7 LELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
+E L + D+ + +K IDR +++++ + + + +G+ + + INP+ GD+ ++
Sbjct: 1 MENLALIDSFSEFKDDKLIDRVTLMAILEEVFRSTLKRRFGSDDNFDIIINPDKGDLEIW 60
Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
R VV + VE+ +ISL AR + ++G VS+ + +D GR ++ + +Q +I K
Sbjct: 61 RNRVVVADGEVEDDNEEISLTDARKIEEDFEVGEDVSEEVKLIDLGRRSILALRQNLISK 120
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGD 180
+ E + Y +FK+ G++ + V + + +I +D ++ ++ +D I + R G+
Sbjct: 121 IHEHDNTNIYKQFKELEGDLYTAEVHHIRHRAIILLDDDGNEIILPKDRQIPSDFFRKGE 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
V+ I V + P +++SRT P F+ KLF E+PE+++G++ VK V R PG +AK+A
Sbjct: 181 NVRGVIESVELKGNKPAIIMSRTSPLFLEKLFESEIPEVFDGLITVKNVVRIPGEKAKVA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S D IDPVGACVGM+GSR+ +V EL +E ID++ ++ + ++ AL PA +T +
Sbjct: 241 VDSYDDRIDPVGACVGMKGSRIHGIVRELGNENIDVINYTTNLNLYITRALSPARITSIK 300
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DE+ + ++ E++S AIGR G N+RLA QLTG+ ID+ E + +F++ +
Sbjct: 301 IDEENKTAQAVLKPEEVSKAIGRGGHNIRLAGQLTGYEIDVYREGVEEDVELTEFSDEIE 360
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
++ G + ++S++ +EET +++ +E E
Sbjct: 361 AWV---------IEAFGKIGLDTARSVLEQEVSDLVRRTDLEEETVLDVMRILKEEFEE 410
>gi|330836562|ref|YP_004411203.1| NusA antitermination factor [Spirochaeta coccoides DSM 17374]
gi|329748465|gb|AEC01821.1| NusA antitermination factor [Spirochaeta coccoides DSM 17374]
Length = 477
Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats.
Identities = 145/490 (29%), Positives = 256/490 (52%), Gaps = 30/490 (6%)
Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70
+ ++ EK I +D+V+S + D ++ A + +GT ++ V+ + + +++L +VE
Sbjct: 7 EAIKSMVEEKGISQDLVISTIEDFLRAAYKRKFGTDANAVVQFSDDLSNVTLNARRIIVE 66
Query: 71 EVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
+ + T +ISL+ A + +IG + P+ +F R+++QSAKQ Q +R+ ++D
Sbjct: 67 DENYYDMTTEISLEEAEELVGKCEIGDELLVPIDLKEFDRISIQSAKQRSRQSLRDIQKD 126
Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
+ E+++K G++I G V+R + VD+G+++G++ R SRE R GD+VK Y+
Sbjct: 127 TTFKEYENKTGQLIIGYVQRQIGDDFYVDIGSTEGILPRRNQSSREVYRQGDKVKFYVEK 186
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V + G +V+LSRT + + LF +EVPEIY+ +++ + R+ G R K+AV+S I
Sbjct: 187 VEKTDHGVRVVLSRTSAELVKLLFELEVPEIYDHSIEIHDIVREAGYRTKVAVYSHRDDI 246
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307
DPVGACVG++G R+Q ++ E+ EKIDI+ + P+ F+ NAL PA V V+ L ++ R
Sbjct: 247 DPVGACVGLKGMRIQTIMKEIEGEKIDILKYDPNPEVFIRNALAPAEVKDVILLKQNERR 306
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
IV QLSLAIG++G NVRLA+QL+ W I++ TE + +
Sbjct: 307 ALAIVDDTQLSLAIGKQGLNVRLANQLSDWIIEVKTEAQFAELDIASTARSR-------- 358
Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427
F D +E+ V E+ E ++ E + +T ++
Sbjct: 359 ---------AEALFTDADEVEDVSDYEMT-------EDVPALRFDEGEVADEDYVTEEED 402
Query: 428 IRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGF 487
E + L +P ID+++ L +GI T+ +L + +K D
Sbjct: 403 GDEGDL--NLSELP-IDAELIAKLNSHGIYTVGQYINLDDAELTSLDDVTVEEKQKLDEI 459
Query: 488 LSSLGTPKDQ 497
+ + +++
Sbjct: 460 FNEFVSIEEE 469
>gi|312194982|ref|YP_004015043.1| transcription termination factor NusA [Frankia sp. EuI1c]
gi|311226318|gb|ADP79173.1| transcription termination factor NusA [Frankia sp. EuI1c]
Length = 391
Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats.
Identities = 133/351 (37%), Positives = 196/351 (55%), Gaps = 38/351 (10%)
Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAARSL-----YGTMS-----DIRVEINPETGDISL 62
+ E + + ++ + ++ KA + G D RV ++ ++G++++
Sbjct: 8 LRGIEREYDLSFETLVEAIETALLKAYQHTRVQQDAGDEEEPRVADARVVVDRKSGEVTV 67
Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
A++ P G P DFGR+A +AKQVI+Q++
Sbjct: 68 L--------------------AQEIQPD---GSAREWDDTPADFGRIAQATAKQVIMQRL 104
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRP 178
REA+++ Y ++ D+ EI+SG V+ E V+VDLG +GV+ E + E L
Sbjct: 105 REAKQEVTYGQYADREHEIVSGVVQHHEQRAGSRVVLVDLGTIEGVLPPAEQVPGETLEH 164
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
GDR+K Y+ V R G V LSRTHP+ + LF +EVPE+ +G V++ A++R+ G R+K
Sbjct: 165 GDRIKCYVVHVARGPHGAAVTLSRTHPELVKGLFRLEVPEVADGTVEIAAIAREAGHRSK 224
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV S + ++P GAC+G GSRV+AV+ EL EKIDIV WS D ATFV NAL PA V++
Sbjct: 225 IAVRSKVAGVNPKGACIGPMGSRVRAVMAELHGEKIDIVDWSADPATFVGNALSPARVSR 284
Query: 299 VVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
V + D V VP QLSLAIGR GQN RLA++LT W IDI ++ E
Sbjct: 285 VEVTDLAGRAARVTVPDYQLSLAIGREGQNARLAARLTSWRIDIHSDTEGD 335
>gi|116490510|ref|YP_810054.1| transcription elongation factor [Oenococcus oeni PSU-1]
gi|290889910|ref|ZP_06552997.1| hypothetical protein AWRIB429_0387 [Oenococcus oeni AWRIB429]
gi|116091235|gb|ABJ56389.1| Transcription elongation factor [Oenococcus oeni PSU-1]
gi|290480520|gb|EFD89157.1| hypothetical protein AWRIB429_0387 [Oenococcus oeni AWRIB429]
Length = 473
Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats.
Identities = 138/439 (31%), Positives = 223/439 (50%), Gaps = 6/439 (1%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
M S R EL A+ EK I ++ ++ + D++ A + + +++ V+++PE +
Sbjct: 1 MASDYRRELFSALQALQAEKGISQEDAITSLKDTLVTAYKKNFEGETNVEVDVDPEKQEF 60
Query: 61 SLFRLLEVVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
+L ++ EV+ + + + +I LK AR+ + + + G + + P DFGR+A QS K
Sbjct: 61 NLLQIKEVIPDGDMIDPYSEIYLKDAREINSAYEAGDQIKFEINPRDFGRLAAQSGKNKS 120
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLR 177
Q +RE E++ + ++ EI+S V R + + V + + + + I E +
Sbjct: 121 TQTIREKEKEAIHARYEGFEHEIVSARVAREDQRFLWVTMPDGQEAAMGDKDRIPGETYK 180
Query: 178 PGDRVKSYIYDVRRE-QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236
GD +K I V RGPQ+ +SRT P+ + +LF EVPE+Y+G V +++++R+ G R
Sbjct: 181 TGDPIKVLINRVEDSATRGPQIYVSRTSPELVKRLFEQEVPEVYDGTVVIESIAREAGDR 240
Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296
+K+AV ++DS++DP+G VG RGSRVQAVV EL E +DIV W D A ++ NAL PA V
Sbjct: 241 SKVAVRTTDSNLDPIGTLVGTRGSRVQAVVNELHGENMDIVEWVEDEAQYIANALNPAEV 300
Query: 297 TKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355
V+ D + VIVP QLSLAIG+RGQN RLA++LT + IDI +E + + Q
Sbjct: 301 VDVIFSPDNDNEVTVIVPDYQLSLAIGKRGQNARLAAKLTKFKIDIKSETQAENDPQLQA 360
Query: 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415
E D E A + D + A E
Sbjct: 361 ILEESAKYAEEEDQSDETDE-TDEALEDETEYADANEYFSEGADQSDASEEEKTSESAEE 419
Query: 416 YLEGIDITLQKKIRELGVS 434
+ + + K +
Sbjct: 420 SSSAEEDSSKAKAKMTEAE 438
>gi|42526617|ref|NP_971715.1| transcription elongation factor NusA [Treponema denticola ATCC
35405]
gi|41816810|gb|AAS11596.1| N utilization substance protein A, putative [Treponema denticola
ATCC 35405]
Length = 495
Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats.
Identities = 136/452 (30%), Positives = 233/452 (51%), Gaps = 36/452 (7%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+++ A EK ID D VL ++ +++ + + +GT ++ N ETG ++ +
Sbjct: 5 IIEAIREFAQEKGIDDDFVLHIVEQALKASYKKQFGTDAN--AVFNEETG--KIYSKKII 60
Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
E+ +N ISL+ A+ PS + G + + P G +V+ Q IQ +RE ++D
Sbjct: 61 TEDAKNPVFDISLEEAKKLAPSCEAGDELLVEVDPKSLGINSVKVGMQRAIQCIREMQKD 120
Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG------DRV 182
Y E+ KVGEII G R GN+ VDLG +G++ + ++ R+
Sbjct: 121 TLYAEYSTKVGEIIIGYYHRERNGNIYVDLGKVEGLLPKKYQCPGDHFGRNAAAGEESRI 180
Query: 183 KSYIYDVRREQRGP--QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
K+ + +V++ ++ Q++LSRT +F+ ++ +EVPEI +GIV++ + R+PG R K+A
Sbjct: 181 KALVREVKKHRQSNVVQLILSRTDAEFVRQILEVEVPEIESGIVKIHNIVREPGYRTKIA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V + IDPVGACVG +G+R+QAV+ EL DEKIDI+ +S D ++ +AL PA V V+
Sbjct: 241 VSTDRDDIDPVGACVGAKGARIQAVIAELDDEKIDILPYSEDPKAYIKSALSPAEVMDVM 300
Query: 301 L-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
+ D + + IV QLSLAIG+ G NVRLA++L W ID+ TEE+ +
Sbjct: 301 ILDAEKRKALAIVSDSQLSLAIGKHGLNVRLANRLVDWNIDVKTEEQFKQMDIYTDARKA 360
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+ + + +IS +A + G E+ ++ E +
Sbjct: 361 VENLFTDETSDE--------------DEEYEEISNVAELPGITEDILTVLRN--NEIEDI 404
Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVAL 451
D+ + +E+ ++ G+ +++ L
Sbjct: 405 QDLINME-------DDEIRALEGLTTEMADTL 429
>gi|89889478|ref|ZP_01200989.1| transcription termination factor NusA [Flavobacteria bacterium
BBFL7]
gi|89517751|gb|EAS20407.1| transcription termination factor NusA [Flavobacteria bacterium
BBFL7]
Length = 412
Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats.
Identities = 126/412 (30%), Positives = 231/412 (56%), Gaps = 15/412 (3%)
Query: 6 RLELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62
+E L + ++ + +K IDR +++++ D + A + YG + + INP+ GD+ +
Sbjct: 2 NMENLALIESFSEFKDDKMIDRVTLMAILEDVFRSALKRKYGDDDNFDIIINPDKGDLEI 61
Query: 63 FRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
+R VV + VE+ +I L AR +P ++G V++ + + GR A+ + +Q +I
Sbjct: 62 WRNRVVVADGEVEDDNSEIELTAARKIEPDYEVGEDVAEEVKLIQLGRRAILALRQNLIA 121
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPG 179
K+ E + Y +FK+ GE+ S V + + +I +D ++ ++ +D I + R G
Sbjct: 122 KIHEHDNTNIYKQFKELEGELYSAEVHHIRHRAIILLDDEGNEIIMPKDRQIGSDFFRKG 181
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
+ V+ I V P ++LSRT P+F+ KLF E+PE+++G++ VKAV R+PG +AK+
Sbjct: 182 ENVRGIIESVELRGNKPNIILSRTSPKFLEKLFEQEIPEVFDGLITVKAVVREPGEKAKV 241
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV S D IDPVGACVG++GSR+ +V EL +E ID++ ++ ++ ++ AL PA + +
Sbjct: 242 AVDSYDDRIDPVGACVGVKGSRIHGIVRELGNENIDVINYTSNTQLYIARALSPAKIISM 301
Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
++E+ + EV + E++S AIGRRG N+RLA +LTG+ ID+I + + +F++
Sbjct: 302 EINEETKKAEVRLNPEEVSKAIGRRGHNIRLAGKLTGYDIDVIRDGAEEDVELTEFSDEI 361
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411
+ ++ G + + I+++ +EET + +
Sbjct: 362 EPWI---------IEEFSKIGLDTAKSILEQDIADLVKRTDLEEETVIAVVT 404
>gi|153873979|ref|ZP_02002372.1| Transcription termination factor NusA [Beggiatoa sp. PS]
gi|152069556|gb|EDN67627.1| Transcription termination factor NusA [Beggiatoa sp. PS]
Length = 355
Score = 279 bits (715), Expect = 6e-73, Method: Composition-based stats.
Identities = 161/355 (45%), Positives = 239/355 (67%), Gaps = 6/355 (1%)
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLR 177
+QK+REAER + ++D+ GE+ISG VKRVE GNVI+DLG + + +I RDE I RE++R
Sbjct: 1 MQKIREAERAQIIEAYQDRQGELISGVVKRVERGNVILDLGGNAEALITRDEMIPRESVR 60
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
PGDR++ Y+Y VR E RGPQ+ LSRT P+ ++KLF+MEVPEI +++ +RDPG RA
Sbjct: 61 PGDRLRGYLYSVRPESRGPQIFLSRTAPELLIKLFNMEVPEIGEHFLEIVDAARDPGLRA 120
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV D IDPVGACVGMRGSRVQA+ EL E++DI+V+ + A FV+NA+ PA V
Sbjct: 121 KIAVKPKDPRIDPVGACVGMRGSRVQAISNELAGERVDIIVFDENPAQFVMNAMAPADVV 180
Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
+++DE+ ++V V +EQLS AIGR GQNVRLASQLT WT++++T+++ +++
Sbjct: 181 SIIVDEETHSMDVAVQEEQLSQAIGRNGQNVRLASQLTSWTLNVMTDKQAREKHEQEALV 240
Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417
+ FM + VDE IA++LV EGF+ +EE+A V ++E+ IE FDE E++ RA++ L
Sbjct: 241 MLELFMDELEVDEEIANILVQEGFSSIEEVAYVPLTEMLQIEAFDENLVKELRSRAKDAL 300
Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGE-----NGIKTMEDLAGCSV 467
I +++ + +SEE + ++ + + + T E+L S+
Sbjct: 301 LTRAIATEEQDESILLSEEKLPQNMVADEMNEQFMQPVATTHKVITQENLNEQSI 355
>gi|237736658|ref|ZP_04567139.1| transcription elongation factor NusA [Fusobacterium mortiferum ATCC
9817]
gi|229420520|gb|EEO35567.1| transcription elongation factor NusA [Fusobacterium mortiferum ATCC
9817]
Length = 354
Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats.
Identities = 131/334 (39%), Positives = 204/334 (61%), Gaps = 3/334 (0%)
Query: 21 SIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV--EEVENYTCQ 78
I ++ +LS + ++ A + YG D+ VEI+ ETGD+ ++ + VV E++ + +
Sbjct: 21 GISKESLLSTVEQALLAAYKKNYGEEEDVEVEIDRETGDVKIYEVKTVVPTEDLYDAAIE 80
Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138
IS A + + IG V+ + +F R A+Q+ KQ++IQKVREAER+ Y FK K
Sbjct: 81 ISYDDALEIKKRVKIGEVIRIEVNCEEFRRNAIQNGKQIVIQKVREAEREYIYDRFKVKE 140
Query: 139 GEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197
+II+G ++R E NV ++ + ++ E + R G+R+K Y+ +V + + P+
Sbjct: 141 HDIINGIIRRIDERKNVFIEFDGIEAILPPVEQSPADTYRVGERIKVYLAEVEKTNKFPK 200
Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGM 257
+++SR H + KLF +E+PEI +G++++KAV+R+ GSRAK+AV+S+D +ID VGAC+G
Sbjct: 201 IVISRKHEGLLRKLFELEIPEITSGLIEIKAVAREAGSRAKVAVYSADPNIDTVGACIGQ 260
Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQL 317
+G R++ +V EL EKIDIVVW FV L PA V V + E+ VIV QL
Sbjct: 261 KGLRIKNIVNELNGEKIDIVVWKESVEEFVSAVLSPAKVVSVEVVEEENTARVIVDNSQL 320
Query: 318 SLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351
SLAIG+ GQN RLA++LTG +DI T +
Sbjct: 321 SLAIGKNGQNARLAAKLTGMRVDIKTADRVEEGE 354
>gi|296171600|ref|ZP_06852840.1| transcription elongation factor NusA [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295894055|gb|EFG73817.1| transcription elongation factor NusA [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 351
Score = 279 bits (713), Expect = 9e-73, Method: Composition-based stats.
Identities = 131/359 (36%), Positives = 198/359 (55%), Gaps = 31/359 (8%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ A+ ++ I + +L + ++ A R G +D R+EI+ +TG + VV
Sbjct: 5 MAALHAIEVDRGISVNELLETIKSALLTAYRHTEGHQNDARIEIDRKTGVVK------VV 58
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
AR+ D ++ D P FGR+A +A+QV++Q+ R+AE +R
Sbjct: 59 --------------ARETDDDGNVISEWDD--TPEGFGRIAATTARQVMLQRFRDAENER 102
Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDR 181
Y EF + GEI++G ++R N V+V +G S+GVI E + E+ G+R
Sbjct: 103 TYGEFSTREGEIVAGVIQRDSRANARGLVVVRMGTETKASEGVIPAAEQVPGESYEHGNR 162
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V+ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV
Sbjct: 163 VRCYVIGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV 222
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV- 300
S+ ++ GAC+G G RV+ V++EL EKIDI+ + D + FV NAL PA V V
Sbjct: 223 KSNVPGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDEDPSRFVANALSPAKVVSVSI 282
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
+D + V+VP QLSLAIG+ GQN RLA++LTGW IDI + + +
Sbjct: 283 IDPNARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDTPGGSEGHSEGHPEH 341
>gi|296139427|ref|YP_003646670.1| NusA antitermination factor [Tsukamurella paurometabola DSM 20162]
gi|296027561|gb|ADG78331.1| NusA antitermination factor [Tsukamurella paurometabola DSM 20162]
Length = 333
Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats.
Identities = 126/351 (35%), Positives = 194/351 (55%), Gaps = 31/351 (8%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ A+ EK I + V+ + ++ A + G R+++N TG++ +
Sbjct: 5 MATLRAIEAEKDISVETVIEAIQVALLTAYKHTEGHEPHARIDVNRRTGEVKVL------ 58
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
A++ D +I + P FGR+A SA+Q+I Q++R+AE DR
Sbjct: 59 --------------AQELDADGNI--ITEWDDTPEGFGRIAADSARQLITQRLRDAENDR 102
Query: 130 QYLEFKDKVGEIISGTVKRVEY----GNVIVDLG----NSDGVIRRDETISRENLRPGDR 181
+ EF GE++SG V+ G V+V +G +G++ E + EN GDR
Sbjct: 103 TFGEFAVYEGEVVSGVVQADARAAARGFVVVRIGSEREGHEGLLPPAEQVPGENYEHGDR 162
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K Y+ V R QRG Q+ LSRTHP + KLF +EVPEI +G V++ +V+R+ G R+K+AV
Sbjct: 163 MKFYVVGVSRGQRGTQITLSRTHPNLVKKLFALEVPEIADGSVEITSVAREAGHRSKIAV 222
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
+S ++ GAC+G G RV+ V+++L EKIDI+ + D A FV NAL P+ V V +
Sbjct: 223 RTSVPGLNAKGACIGPMGQRVRNVMSDLDGEKIDIIAYDDDPAVFVGNALSPSSVVSVTI 282
Query: 302 -DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351
D V+VP +LSLAIG+ GQN RLA++LTGW IDI ++ + +
Sbjct: 283 VDPKEKAARVVVPDFKLSLAIGKEGQNARLAARLTGWRIDIRSDADPAAAE 333
>gi|86140762|ref|ZP_01059321.1| transcription elongation factor NusA [Leeuwenhoekiella blandensis
MED217]
gi|85832704|gb|EAQ51153.1| transcription elongation factor NusA [Leeuwenhoekiella blandensis
MED217]
Length = 409
Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats.
Identities = 127/418 (30%), Positives = 234/418 (55%), Gaps = 15/418 (3%)
Query: 7 LELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
+E + + ++ + +K IDR ++++++ + + + +G+ + + INP+ GD+ ++
Sbjct: 1 MENIALIESFSEFKDDKLIDRVMLMAILEEVFRSTLKKRFGSDDNFDIIINPDKGDLEIW 60
Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
R VV + VE+ +ISL AR +P ++G VS+ + +D GR ++ + +Q +I K
Sbjct: 61 RNRVVVADGEVEDENSEISLTEARRIEPDFEVGEDVSEEVKLIDLGRRSILALRQNLISK 120
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGD 180
+ E + Y +FKD GE+ + V + + +I+ D ++ ++ +D+ I + R G+
Sbjct: 121 IHEHDNTNIYKQFKDLEGELYNAEVHHIRHRAIILLDDEGNEIIMPKDKQIPSDFFRKGE 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
V+ I V + P +++SRT P F+ KLF E+PE+++G++ VK V R PG +AK+A
Sbjct: 181 NVRGIIESVELKGNKPAIIMSRTSPLFLEKLFESEIPEVFDGLITVKKVVRIPGEKAKVA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S D IDPVGACVGM+GSR+ +V EL +E ID++ ++ + ++ AL PA +T +
Sbjct: 241 VDSYDDRIDPVGACVGMKGSRIHGIVRELGNENIDVINFTNNLQLYITRALSPAKITSIK 300
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+D++ EV++ E++S AIGR G N+RLA QLTG+ ID+ E + +F++
Sbjct: 301 IDDENKTAEVMLKPEEVSKAIGRGGHNIRLAGQLTGYEIDVYREGVEEDVELTEFSD--- 357
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
+++ I G + + + ++ +EET ++ RE E
Sbjct: 358 ------EIEDWIIAEFSKIGLDTAKSILEQDVEDLVRRTDLEEETIADVMRILREEFE 409
>gi|257063653|ref|YP_003143325.1| transcription termination factor NusA [Slackia heliotrinireducens
DSM 20476]
gi|256791306|gb|ACV21976.1| transcription termination factor NusA [Slackia heliotrinireducens
DSM 20476]
Length = 401
Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats.
Identities = 139/359 (38%), Positives = 208/359 (57%), Gaps = 37/359 (10%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
EL+ A+A+EK ID ++ + S+ K+ +S+ D RV I+ TG I ++ L+
Sbjct: 4 ELMDALQALAHEKKIDEIYLIERLEASLAKSYQSILNLEWDARVTIDRTTGQIYVYELV- 62
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
T ++ D + P + R+A Q+AK VI VREA R
Sbjct: 63 -------PTGEM--------DEDGYWTEFEERDVTPSNVSRIAAQNAKSVIASIVREAGR 107
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIR----------RDETISRENL 176
Y EF+D+VG+I++GTV + IV + + + R+E + E
Sbjct: 108 QSIYDEFRDRVGDIVTGTVLQGTPDFTIVKIRDGVEAELPHYDEKRNPGERNEVPAGERY 167
Query: 177 RPGDRVKSYIYDVRREQR----------GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQV 226
R R+K+ I DVR P +++SRTHP + +LF +EVPEIY+G+V++
Sbjct: 168 RHNQRIKTLIIDVRDPNSVENRGRGDQARPAIVVSRTHPDLIRRLFELEVPEIYDGMVEI 227
Query: 227 KAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATF 286
K+++R+PG+R+K+AV S + ++DPVGACVG +GSRV+ VV ELR+E++D++ WS D A +
Sbjct: 228 KSIAREPGARSKVAVASREPNLDPVGACVGPKGSRVRMVVEELRNERVDVIQWSEDPAKY 287
Query: 287 VINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345
V NAL PA VT+V +DE+ VIVP +QLSLAIG+ GQN RLA++LTGW IDI +
Sbjct: 288 VANALSPARVTRVSVDEENQYATVIVPDDQLSLAIGKEGQNARLAARLTGWHIDIKSTS 346
>gi|257791560|ref|YP_003182166.1| NusA antitermination factor [Eggerthella lenta DSM 2243]
gi|317490693|ref|ZP_07949159.1| transcription termination factor NusA [Eggerthella sp. 1_3_56FAA]
gi|325833259|ref|ZP_08165765.1| transcription termination factor NusA [Eggerthella sp. HGA1]
gi|257475457|gb|ACV55777.1| NusA antitermination factor [Eggerthella lenta DSM 2243]
gi|316910224|gb|EFV31867.1| transcription termination factor NusA [Eggerthella sp. 1_3_56FAA]
gi|325485641|gb|EGC88109.1| transcription termination factor NusA [Eggerthella sp. HGA1]
Length = 405
Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats.
Identities = 137/358 (38%), Positives = 209/358 (58%), Gaps = 42/358 (11%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
EL++ A+A+E+ ID ++ + S+ K+ + + D RV I+ +TG I ++ L+
Sbjct: 5 ELIEALQALAHERKIDEFYLIERLEASLAKSYQHILDLEWDARVTIDRQTGHIYVYELVP 64
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDP---LPPMDFGRVAVQSAKQVIIQKVRE 124
V E P + G + P D R+A Q+AK VI VRE
Sbjct: 65 VGE------------------PDEETGEYSEFEERDVTPDDVSRIAAQNAKGVIASIVRE 106
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIR----------RDETISR 173
A R Y EF D+VG++++GTV + I+ + + + R+E S
Sbjct: 107 AGRQSIYEEFSDRVGDLVTGTVLQGTPDFTIIKIRDGVEAELPHYDVKRNPNERNERPSN 166
Query: 174 ENLRPGDRVKSYIYDVRREQRGPQ----------VLLSRTHPQFMVKLFHMEVPEIYNGI 223
E+ R R+K I +VR +++SRTHP + +LF +EVPEIY+G+
Sbjct: 167 EHYRHNQRLKVLIIEVRDPNSDAPKMRGEQARPAIVVSRTHPDLIRRLFEIEVPEIYDGM 226
Query: 224 VQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283
V++K+++R+PG+R+K+AV S ++++DPVGACVG +GSRV+ VV ELR+E++D++ W+ D
Sbjct: 227 VEIKSIAREPGARSKIAVASREANLDPVGACVGPKGSRVRMVVEELRNERVDVIQWAEDP 286
Query: 284 ATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
A +V NAL PA VT+VV+DED V+VP +QLSLAIG+ GQN RLA++LTGW IDI
Sbjct: 287 AVYVANALSPAKVTRVVIDEDNHYATVVVPDDQLSLAIGKEGQNARLAARLTGWHIDI 344
>gi|288800576|ref|ZP_06406034.1| transcription termination factor NusA [Prevotella sp. oral taxon
299 str. F0039]
gi|288332789|gb|EFC71269.1| transcription termination factor NusA [Prevotella sp. oral taxon
299 str. F0039]
Length = 421
Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats.
Identities = 136/402 (33%), Positives = 225/402 (55%), Gaps = 8/402 (1%)
Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVENYTC 77
K+IDR ++SV+ +S + L+G+ + V +NP+ GD ++R VV EV +
Sbjct: 24 KNIDRATLVSVLEESFRNVLAKLFGSDENFDVIVNPDKGDFEIYRNRVVVANGEVSDENK 83
Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137
+I+L A +P ++G VS+ + FGR A+ + +Q + KV E E D Y ++KD+
Sbjct: 84 EIALNDAIKIEPDYEVGEEVSERVNFAGFGRRAILNLRQTLASKVLELEHDALYNKYKDR 143
Query: 138 VGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196
VG+IIS V + + ++VD N++ + + E I + R G+ V++ I V E P
Sbjct: 144 VGQIISAEVYQVWKREVLLVDDENNELKLPKSEQIPSDVYRKGETVRAVIARVDNENNNP 203
Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256
++ LSRT P F+ +L EVPEI +G++ +K ++R PG RAK+AV S D IDPVGACVG
Sbjct: 204 KIFLSRTSPMFLERLLEAEVPEINDGLISIKKIARMPGERAKIAVESYDERIDPVGACVG 263
Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316
++G+R+ +V EL +E ID+V ++ ++ F+ AL PA++ + +DE+ + EV + EQ
Sbjct: 264 VKGNRIHGIVRELCNENIDVVNYTSNTKLFIQRALSPAVINSINIDEEAHKAEVFLQPEQ 323
Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376
+SLAIGR G N++LAS LT +TID+ E ++ + + + +D+ I +
Sbjct: 324 VSLAIGRSGLNIKLASMLTEYTIDVFREINENEADEDIYLDEFAD-----EIDQWIIDSI 378
Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
A G + + + +EET + R E
Sbjct: 379 KAIGLDTAKSVLSAPREMLIEKADLEEETVDHVLNVLRAEFE 420
>gi|313115476|ref|ZP_07800941.1| transcription termination factor NusA [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310622186|gb|EFQ05676.1| transcription termination factor NusA [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 368
Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats.
Identities = 140/367 (38%), Positives = 213/367 (58%), Gaps = 8/367 (2%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-IRVEINPETGD 59
M +AN E + + +E+ I + ++ + +I A + Y D ++V+I+P G
Sbjct: 1 MAAANN-EFFEALSMLEHERGITAEYLIEKIKAAIIIAVKKNYEVEEDHVKVDIDPAAGR 59
Query: 60 ISLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117
+ + +VV E+ + +I + A+ S ++G + PL DFGR+A Q+AK V
Sbjct: 60 FDVALIQDVVADEDWYDEHSEIGITEAQKIRKSYEVGDRIVTPLKTKDFGRIAAQTAKHV 119
Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV--DLGNS-DGVIRRDETISRE 174
I Q +REAER +Q E + + +I+ TV RV+ IV DLG + ++ +E + E
Sbjct: 120 IRQGIREAERSQQLSEIQSRAHDIVQATVTRVDPEKGIVALDLGKGGEAILPHNEQVPGE 179
Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234
G ++ Y+ DV +RGP+V++SRTHP + +LF +EVPEI++G V+VKA+SR+ G
Sbjct: 180 VYTEGQTLQVYVVDVVSTERGPRVMISRTHPGLVKRLFELEVPEIFDGTVEVKAISREAG 239
Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294
+R K+AV+S D +++PV AC+G G+RV AVV +L EKIDIV WS D + F+ AL PA
Sbjct: 240 ARTKMAVWSKDPNVNPVSACIGEHGARVAAVVEKLGGEKIDIVKWSEDISEFISAALSPA 299
Query: 295 IVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353
V KV L + V VP +QLSLAIG +GQN RL ++LTG+ IDI E +
Sbjct: 300 KVVKVELLPGETRSCRVTVPDQQLSLAIGNKGQNARLCARLTGYNIDIRPESGYYGEEEP 359
Query: 354 DFNERTQ 360
T
Sbjct: 360 KKEAETD 366
>gi|294815429|ref|ZP_06774072.1| Transcription elongation factor NusA [Streptomyces clavuligerus
ATCC 27064]
gi|326443782|ref|ZP_08218516.1| transcription elongation factor NusA [Streptomyces clavuligerus
ATCC 27064]
gi|294328028|gb|EFG09671.1| Transcription elongation factor NusA [Streptomyces clavuligerus
ATCC 27064]
Length = 335
Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats.
Identities = 126/349 (36%), Positives = 196/349 (56%), Gaps = 22/349 (6%)
Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70
++ +A EK I D+++ + ++ A G+ R E++ +TG ++++
Sbjct: 6 KLLKGLAQEKEIPFDLLVEAIESALLIAYHRTEGSRRHARAELSRQTGHVTVWAE----- 60
Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130
E+ L+ ++ P DFGR+A +A+QVI Q++R+AE D
Sbjct: 61 --EDPA---DLEEGQEPK---------EFDDTPSDFGRIAATTARQVIQQRLRDAENDVT 106
Query: 131 YLEFKDKVGEIISGTVKR-VEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYD 188
+ E+ + G+++SG V++ + NV+V L + ++ E + E G R+++Y+
Sbjct: 107 FGEYARREGDVVSGQVQQGKDPKNVLVKLDDKLEAILPVQEQVPGEEYPHGLRLRTYVVR 166
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S +
Sbjct: 167 VAKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEIAAIAREAGHRTKIAVRSTRSGL 226
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307
+ GAC+G G RV+ V+ EL EKIDIV WS D A V NAL PA V+KV +D
Sbjct: 227 NAKGACIGPMGGRVRNVMAELHGEKIDIVDWSDDPAEMVANALSPARVSKVEVVDLGARS 286
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356
V VP QLSLAIG+ GQN RLA++LTGW IDI + E + + +
Sbjct: 287 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEPGTDTEPRQD 335
>gi|228470366|ref|ZP_04055269.1| transcription termination factor NusA [Porphyromonas uenonis 60-3]
gi|228307948|gb|EEK16831.1| transcription termination factor NusA [Porphyromonas uenonis 60-3]
Length = 459
Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats.
Identities = 135/457 (29%), Positives = 241/457 (52%), Gaps = 28/457 (6%)
Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77
K+ID + +L V+ DS + ++G+ + V IN ++GD ++R EVV + VE
Sbjct: 21 KNIDEETMLHVLEDSFRSILAKMFGSDDNFDVIINADSGDFEIWRTREVVADDAVERENE 80
Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137
Q++ AR+ DP +IG V+D + + FGR A+ + +Q + K+ + +++ Y F ++
Sbjct: 81 QVAYSEAREIDPEAEIGDDVTDSVDFLSFGRRAIVNLRQTLSSKILDLQKEHFYQTFIER 140
Query: 138 VGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196
VGE+I+ V + + ++VD ++ ++ + E I E R GD V + I V E P
Sbjct: 141 VGEMITAEVYQVWKRETLLVDEDGNELIMPKSEQIPDEYFRKGDSVHAVIARVDNENNNP 200
Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256
+V LSRT P+F+ +LF + VPEI +G++ +K V+R PG RAK+AV S D IDPVG+CVG
Sbjct: 201 RVTLSRTSPEFLKRLFEINVPEIADGLITIKRVARIPGVRAKIAVESYDDRIDPVGSCVG 260
Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316
M GSR++ +V EL E ID++ ++ + + F+ AL PA V+ + L + + EV + E
Sbjct: 261 MNGSRIRGIVRELHGENIDVLTYTSNDSLFIQRALSPAKVSSIELYPETAKAEVYLQPED 320
Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376
+ LAIG+ N++LAS LTG+ I++ + D+ +E + +++ + +L
Sbjct: 321 VPLAIGKNASNIKLASVLTGFEIEVFRDAADTTEEDIYLSEFSD------EIEDWVIKML 374
Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE 436
+ G + +E+ + ET + +R L +
Sbjct: 375 LDIGLNTARAVLTTSRTELLQKTDLEIETIDHV------------------LRILSSEFD 416
Query: 437 LCSIPGID-SKIKVALGENGIKTMEDLAGCSVDDLLG 472
L + + + + L ++ + T ++A ++DL
Sbjct: 417 LEELEEMGLPQENIDLIKSPVPTQSEIAEAIIEDLKE 453
>gi|183981905|ref|YP_001850196.1| N utilization substance protein a NusA [Mycobacterium marinum M]
gi|183175231|gb|ACC40341.1| N utilization substance protein a NusA [Mycobacterium marinum M]
Length = 347
Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats.
Identities = 129/365 (35%), Positives = 198/365 (54%), Gaps = 31/365 (8%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ A+ ++ I + +L + ++ A R G +D R+EI+ +TG + +
Sbjct: 5 MAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVM------ 58
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
AR+ D ++ D P FGR+A +A+QV++Q+ R+AE +R
Sbjct: 59 --------------ARETDDDGNVISEWDD--TPEGFGRIAATTARQVMLQRFRDAENER 102
Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDR 181
Y EF + GEI++G ++R N V+V +G+ S+GVI E + E+ G+R
Sbjct: 103 TYGEFSTREGEIVAGVIQRDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNR 162
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV
Sbjct: 163 LRCYVVGVSRGSREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV 222
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV- 300
S+ ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V
Sbjct: 223 RSNVPGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSV 282
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+D+ V+VP QLSLAIG+ GQN RLA++LTGW IDI + + +
Sbjct: 283 IDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDSPEQSAEHPERGASRG 342
Query: 361 FFMQA 365
Sbjct: 343 LAHDH 347
>gi|262202085|ref|YP_003273293.1| transcription termination factor NusA [Gordonia bronchialis DSM
43247]
gi|262085432|gb|ACY21400.1| transcription termination factor NusA [Gordonia bronchialis DSM
43247]
Length = 340
Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats.
Identities = 126/349 (36%), Positives = 197/349 (56%), Gaps = 33/349 (9%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ + +K I D V++ + ++ A R G R+++N +TG + +
Sbjct: 5 INALRMIEADKGISIDTVITAIETALLTAYRHTEGFAPHARIDVNRKTGAVRVM------ 58
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVV-SDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
A++ D + G VV P FGR+A +A+QVI+Q++R+AE +
Sbjct: 59 --------------AQELDDN---GDVVHEWDDTPEGFGRIAATTARQVILQRLRDAENE 101
Query: 129 RQYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGD 180
+ + + GEI+ G V++ N ++V +G+ ++G+I E + E+ GD
Sbjct: 102 KNFGDLVTHEGEIVGGVVQQDARANARGMIVVQIGSDANSTEGIIPPAEQVPGESYTHGD 161
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
R+K Y+ V R RGPQ+ LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+A
Sbjct: 162 RIKCYVVGVSRGARGPQITLSRTHPNLVRKLFSLEVPEIEDGSVEIVAVAREAGHRSKIA 221
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V + + ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V
Sbjct: 222 VHTGVAGLNAKGACIGPMGQRVRNVMSELAGEKIDIIDFDTDPAVFVGNALSPAKVVSVS 281
Query: 301 -LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
+D V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ + +
Sbjct: 282 VVDPTAKAARVVVPDYQLSLAIGKEGQNARLAARLTGWRIDIRSDADPA 330
>gi|325473159|gb|EGC76355.1| N utilization substance protein A [Treponema denticola F0402]
Length = 495
Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats.
Identities = 134/452 (29%), Positives = 232/452 (51%), Gaps = 36/452 (7%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+++ A EK ID D VL ++ +++ + + +GT ++ N ETG ++ +
Sbjct: 5 IIEAIREFAQEKGIDDDFVLHIVEQALKASYKKQFGTDAN--AVFNEETG--KIYSKKII 60
Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
E+ +N ISL+ A+ PS + G + + P G +V+ Q IQ ++E ++D
Sbjct: 61 TEDAKNPVFDISLEEAKKLAPSCEAGDELLVEVDPKSLGINSVKVGMQRAIQCIKEMQKD 120
Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG------DRV 182
Y E+ KVGEII G R GN+ VDLG +G++ + ++ R+
Sbjct: 121 TLYAEYSTKVGEIIIGYYHRERNGNIYVDLGKVEGLLPKKYQCPGDHFGRNAAAGEESRI 180
Query: 183 KSYIYDVRREQRGP--QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
K+ + +V++ ++ Q++LSRT +F+ ++ +EVPEI +GIV++ + R+PG R K+A
Sbjct: 181 KALVREVKKHRQSNVVQLILSRTDAEFVRQILEVEVPEIESGIVKIHNIVREPGYRTKIA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V + IDPVGACVG +G+R+QAV+ EL DEKIDI+ +S D ++ +AL PA V V+
Sbjct: 241 VSTDRDDIDPVGACVGAKGARIQAVIAELDDEKIDILPYSEDPKAYIKSALSPAEVMDVM 300
Query: 301 L-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
+ D + + IV QLSLAIG+ G NVRLA++L W ID+ TEE+ +
Sbjct: 301 ILDAEKRKALAIVSDSQLSLAIGKHGLNVRLANRLVDWNIDVKTEEQFKQMDIYTDARKA 360
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+ + + +IS ++ + G E+ ++ E +
Sbjct: 361 VENLFTDETSDE--------------DEEYEEISNVSELPGITEDILAVLRN--NEIEDI 404
Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVAL 451
D+ + E+ ++ G+ +++ L
Sbjct: 405 QDLINME-------DNEIRALEGLTTEMADTL 429
>gi|333029428|ref|ZP_08457489.1| NusA antitermination factor [Bacteroides coprosuis DSM 18011]
gi|332740025|gb|EGJ70507.1| NusA antitermination factor [Bacteroides coprosuis DSM 18011]
Length = 420
Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats.
Identities = 131/420 (31%), Positives = 234/420 (55%), Gaps = 9/420 (2%)
Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64
+ + L+ K ID+ ++SV+ +S + + GT + V +NP+ GD ++R
Sbjct: 6 DNISLIDTFSDFKENKKIDKTTMISVLEESFRSVIAKIVGTDENYDVIVNPDQGDFEIWR 65
Query: 65 LLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
EVV + V + QISL AR D S +IG V+D + FGR A+ + +Q + K+
Sbjct: 66 NREVVADGDVTDENMQISLTEARKTDESYEIGEEVTDKVHFESFGRRAILNLRQTLASKI 125
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDR 181
E E+D Y ++ ++VG I+S V ++ ++ VD ++ ++ + E I R+ R G+
Sbjct: 126 LELEKDSLYNKYIERVGMIVSAEVYQIWKKEILLVDDEGNELILPKSEQIPRDFFRKGES 185
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V++ + V + P+++LSRT P F+ +LF +EVPEI +G++ +K V+R PG RAK+AV
Sbjct: 186 VRAVVARVDNKNNNPKIILSRTSPLFLERLFELEVPEINDGLITIKKVARIPGERAKVAV 245
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S D IDPVGACVG++GSR+ +V EL +E ID++ ++ + F+ +L PA ++ + L
Sbjct: 246 ESYDDRIDPVGACVGVKGSRIHGIVRELCNENIDVINYTSNIQLFIQRSLSPATISSIRL 305
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
+E+ + E+ + +++SLAIG+ G N++LAS LT +TID+ E +++ +E +
Sbjct: 306 NEEEHKAEIFLQPDEVSLAIGKGGLNIKLASMLTEYTIDVFRELDETEGEDIYLDEFSD- 364
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421
++ + + G + + V + + +EET E+ + E +
Sbjct: 365 -----EIEGWVIDAIKGLGLTTAKAVLEVPRNRLIEDADLEEETVDEVLSILKSEFEEDE 419
>gi|268608287|ref|ZP_06142014.1| NusA antitermination factor [Ruminococcus flavefaciens FD-1]
Length = 416
Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats.
Identities = 133/361 (36%), Positives = 210/361 (58%), Gaps = 5/361 (1%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDI 60
+S N + +++ E S++ D+++ + ++ KAA+ Y + IRVEI+P+T
Sbjct: 1 MSKNNA-FFKALESLGEENSVETDLLIEKVKSAMLKAAKRAYPHSEDRIRVEIDPKTKKF 59
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
+F + +++++ ++++ VAR DP+ +GG + + GR+A SAKQ I
Sbjct: 60 EMFIVQDIIDDYPIDENEVNIDVARTIDPNAIVGGTILKEIDISKLGRMAALSAKQSIKG 119
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVE--YGNVIVDLGNSDGVIRRDETISRENLRP 178
+RE R++ +F+ K E I+ V +VE G V V ++ + R+E I E L
Sbjct: 120 DLREINREQMLGKFEQKEHECITAKVSQVEPGRGTVTVVYEGTELYLFRNEQIPGETLEE 179
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
G VK YI + + + P V +SRTH + +LF +EVPEIY+G V+VK++SR+ GSR K
Sbjct: 180 GQSVKVYITGIIGKNKKPVVKISRTHKDLVKRLFELEVPEIYDGTVEVKSISREAGSRTK 239
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV+S D ++D VGAC+G + SR+ A+V EL EKIDI+ WS + F+ AL PA V K
Sbjct: 240 IAVWSKDPNVDAVGACIGAKRSRITAIVNELNGEKIDIIPWSEKTEEFIARALAPAEVLK 299
Query: 299 VVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
++ E+ VIVP QLSLAIG +GQN +LA++LTG+ IDI + N +
Sbjct: 300 TIVTSEEENTCTVIVPNNQLSLAIGNKGQNAKLAAKLTGFKIDIKPRFDSVTNEEAPEMS 359
Query: 358 R 358
Sbjct: 360 P 360
>gi|296125433|ref|YP_003632685.1| NusA antitermination factor [Brachyspira murdochii DSM 12563]
gi|296017249|gb|ADG70486.1| NusA antitermination factor [Brachyspira murdochii DSM 12563]
Length = 498
Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats.
Identities = 129/450 (28%), Positives = 238/450 (52%), Gaps = 38/450 (8%)
Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV 72
++ EK I +++ V+A +++ A + YG + + + + + ++++ VVEEV
Sbjct: 9 LQQLSDEKDISVELLKEVIASTMELALKKKYGNDINFHIHFDNKN-NPTVYKGANVVEEV 67
Query: 73 ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMD-FGRVAVQSAKQVIIQKVREAERDRQY 131
+ +ISL+ A+ D I++G V + ++ FGR+ AK QK+ + E++ Y
Sbjct: 68 RDKNKEISLEEAKKLDQDINLGDEVLILVDQVEAFGRIESMVAKTTFFQKISDLEKNIIY 127
Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRR 191
EFK + ++++G +R G + ++LG ++G +++ + RE+ GDR+++YIY V+
Sbjct: 128 NEFKRRENQLVNGYFQREHKGTIYINLGKTEGELQKKDQSPREHYTVGDRIRAYIYKVQG 187
Query: 192 EQRGP-------QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ ++LL+RT F+ KLF +E+PEI +G +++K V R PG + K+AV S+
Sbjct: 188 GKDDRTGKEIPTKILLTRTKADFIKKLFELEIPEIADGTIEIKNVVRQPGLKIKVAVVSN 247
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DE 303
+DP+GAC+G +G R+Q+++ E+ EKID+V WS D ++ A+ PA ++++ D
Sbjct: 248 KPEVDPIGACIGQKGIRIQSIIKEIEGEKIDVVKWSKDIREYIAEAITPAKPIRIIITDP 307
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
+ +I+P EQLSLA+G+ G NV+LASQLTG+ DI TE + N + + +
Sbjct: 308 EKKEAMIIIPDEQLSLALGKSGYNVKLASQLTGYYFDIKTETDIKENPELLKDIVPLNQI 367
Query: 364 QAI----------------------------NVDEIIAHLLVAEGFADVEELACVKISEI 395
+ +DE I L+ G +EEL + EI
Sbjct: 368 FSDTAEETENSSEAEAAEAAEVFESNLYSLQGIDESIIKTLIDNGINSIEELYNLSAEEI 427
Query: 396 ASIEGFDEETAVEIQGRAREYLEGIDITLQ 425
D++T + ++ +E ++ +
Sbjct: 428 MEKTNLDKDTVDNLMLVMKDVVEIVESEDE 457
>gi|169630217|ref|YP_001703866.1| transcription elongation factor NusA [Mycobacterium abscessus ATCC
19977]
gi|169242184|emb|CAM63212.1| Transcription elongation protein NusA [Mycobacterium abscessus]
Length = 331
Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats.
Identities = 132/348 (37%), Positives = 193/348 (55%), Gaps = 31/348 (8%)
Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70
+ +A +K I D + ++ ++ A R G + R+EI+ +TG + +
Sbjct: 6 AAVNLMAADKGITVDEAIDIIKSALLTAYRHTDGHEPNARIEIDRKTGVVRVM------- 58
Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130
AR+ D ++ + P FGR+A +A+QV Q VR+AE + +
Sbjct: 59 -------------ARETDQDGNL--ITEWDATPEGFGRIAATTARQVFQQGVRDAENEHK 103
Query: 131 YLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETISRENLRPGDRV 182
+ EF + GEI+ G ++R N V+V +G S+GVI E + E GDR+
Sbjct: 104 FGEFSTREGEIVGGVIQRDARANARGLVVVRMGSETKGSEGVIPSAEQVPGEEYHHGDRL 163
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
+ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV
Sbjct: 164 RCYVVGVSRGAREPLITLSRTHPNLVRKLFSLEVPEISDGSVEIVAVAREAGHRSKIAVA 223
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-L 301
S S ++ GAC+G G RV+ V++EL EKIDI+ + PD A FV NAL PA V V +
Sbjct: 224 SKVSGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDPDPARFVANALSPAKVVSVSVI 283
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
DE VIVP QLSLAIG+ GQN RLA++LTGW IDI ++ +
Sbjct: 284 DEAGKAARVIVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDADPEN 331
>gi|256419698|ref|YP_003120351.1| transcription elongation factor NusA [Chitinophaga pinensis DSM
2588]
gi|256034606|gb|ACU58150.1| NusA antitermination factor [Chitinophaga pinensis DSM 2588]
Length = 415
Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats.
Identities = 125/403 (31%), Positives = 225/403 (55%), Gaps = 8/403 (1%)
Query: 21 SIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTCQ 78
+IDR ++ V+ D + R YG+ + V +N E GD+ + R +V + VE+ Q
Sbjct: 18 NIDRPTLMKVLEDVFKTLLRKKYGSDENFDVIVNTEKGDLEILRRRTIVTDGEVEDDNAQ 77
Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138
I+ A +P +G + + + +DFGR A+ +AKQ + ++ + +++ ++ D+V
Sbjct: 78 IAYSEAILVEPDYQVGEDLYEEVEILDFGRRAILAAKQTLSARIGDLKKNILVKKYADRV 137
Query: 139 GEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197
GEI++G V +V V++ D ++ ++ + E I + + G+ V++ + V + P
Sbjct: 138 GEIVTGEVYQVWKKEVLLLDDERNELILPKSEQIPTDYFKKGENVRAVVKKVEMKNNAPL 197
Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGM 257
++LSRTHP F+ KL +EVPEI++G++ +K + R+PG RAK+AV S D IDPVGACVGM
Sbjct: 198 IILSRTHPTFLAKLLEIEVPEIFDGLIVIKKIVREPGERAKVAVESYDDRIDPVGACVGM 257
Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQL 317
+GSR+ +V ELR+E IDI+ ++ + + AL PA ++++ +D + V + +Q+
Sbjct: 258 KGSRIHGIVRELRNENIDIINYTANIQLLIQRALTPARISRMEVDNENKYASVFLKADQV 317
Query: 318 SLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLV 377
SLAIG++G N++LA +LTG+ ID+ +EE + ++E + L
Sbjct: 318 SLAIGKKGVNIKLACELTGYEIDVFRDEEQEQAEYD-----IDLAEFSDEIEEWVLDELK 372
Query: 378 AEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
G + + + E+ +EET +I+ +E +
Sbjct: 373 RIGCDTARSVLDLTVEELVRRSDLEEETVKDIRRILQEEFDKE 415
>gi|116328714|ref|YP_798434.1| transcription elongation factor NusA [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
gi|116330628|ref|YP_800346.1| transcription elongation factor NusA [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
gi|116121458|gb|ABJ79501.1| Transcription elongation factor [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
gi|116124317|gb|ABJ75588.1| Transcription elongation factor [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
Length = 462
Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats.
Identities = 154/519 (29%), Positives = 237/519 (45%), Gaps = 82/519 (15%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-----------IRVEINPET 57
LL++ +KS+DR+ V+ V+ DS+ A + G + VE
Sbjct: 12 LLEVIQQFCADKSLDREAVMGVIRDSLITAYKKKSGLEGLEEFEESEKPSPVTVEFASGK 71
Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117
+ + +VVE + +I L+ A+ D S +IG V+S P++ R+ AKQ+
Sbjct: 72 DSVVIAIAKKVVEGTPSSALEIGLEDAKAIDASAEIGSVISFREKPVELSRIISSQAKQM 131
Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR 177
+ Q++++ E++ Y E+K K GE+ G +R + + +DLG +G++ R E E
Sbjct: 132 VFQRLKDMEKELLYNEYKAKEGELTHGYFQRWKKDAMSIDLGKVEGIMPRREQNPGEKYH 191
Query: 178 PGDRVKSYIYDVRREQRGPQ--VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235
GDR+K+ I V R P + LSR F+ KLF ME+PEIY+G+V++ V+R P
Sbjct: 192 SGDRLKAIIQRVELRPREPIPVITLSRASADFVRKLFEMEIPEIYDGLVEIINVARQPSI 251
Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295
R K+ V ++ IDPVGACVGM+G R+Q++V EL +E+IDIV S D++ F+ NA+ PA
Sbjct: 252 RTKVVVRATRGEIDPVGACVGMKGVRIQSIVRELGNERIDIVEASDDASEFIANAISPAK 311
Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355
+V +D V+VP +QLSLAIG G NV+LASQL G+ IDI T + +
Sbjct: 312 PVEVKVDGSGREAMVVVPDDQLSLAIGINGSNVKLASQLAGYKIDIKTVAQYNAELASPE 371
Query: 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415
+E L E
Sbjct: 372 ARE------------------------RLERLFYSPAEEA-------------------- 387
Query: 416 YLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSE 475
+ ++ EL E+L PG+ ++I L GIK +E L S DDL
Sbjct: 388 -----KVAAPQEEEELTPLEDL---PGLSARIVGILKSEGIKDLETLIEYSQDDLAKLQ- 438
Query: 476 NKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514
G ++ R + W+E
Sbjct: 439 ----------------GIGHTTAGQILKLLRESVEWVED 461
>gi|240172759|ref|ZP_04751418.1| transcription elongation factor NusA [Mycobacterium kansasii ATCC
12478]
Length = 347
Score = 276 bits (707), Expect = 4e-72, Method: Composition-based stats.
Identities = 127/348 (36%), Positives = 196/348 (56%), Gaps = 31/348 (8%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ A+ ++ I + +L + ++ A R G +D R+EI+ ++G + +
Sbjct: 5 MAALHAIEVDRGISVNELLETIKSALLSAYRHTQGHQTDARIEIDRKSGVVRVIAR---- 60
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
E+++ IS P FGR+A +A+QV++Q+ R+AE +R
Sbjct: 61 -ELDDEGNLIS-----------------EWDDTPEGFGRIAATTARQVMLQRFRDAENER 102
Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDR 181
Y EF + GEI++G ++R N V+V +G+ S+GVI E + E+ G+R
Sbjct: 103 TYGEFSTREGEIVAGVIQRDSRANARGLVVVRMGSETKASEGVIPAAEQVPGESYEHGNR 162
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV
Sbjct: 163 LRCYVVGVSRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV 222
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV- 300
S+ ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V
Sbjct: 223 RSNVPGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSV 282
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
+D++ V+VP QLSLAIG+ GQN RLA++LTGW IDI +
Sbjct: 283 IDQNARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDSPAH 330
>gi|325971224|ref|YP_004247415.1| NusA antitermination factor [Spirochaeta sp. Buddy]
gi|324026462|gb|ADY13221.1| NusA antitermination factor [Spirochaeta sp. Buddy]
Length = 497
Score = 276 bits (707), Expect = 5e-72, Method: Composition-based stats.
Identities = 141/495 (28%), Positives = 244/495 (49%), Gaps = 41/495 (8%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+ ++ EK+I ++V+S + D ++ A + +GT + +E + + + L +
Sbjct: 4 EIGDAIRSMVAEKNISEELVISTIEDILRAAYKRKFGTDENAVIEFSEDFLSVELASRRK 63
Query: 68 VVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+V++ N +I L A++ +IG + P+ DF R++VQSAKQ Q R+
Sbjct: 64 IVDDDNWYNEVTEIPLSEAKEIHEDCEIGDELLIPVDLKDFDRISVQSAKQRAHQSFRDI 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
++D Y E+K K G++I G +R G++ VD+G ++G++ R SRE+ D++K
Sbjct: 124 QKDTLYSEYKAKEGQLIIGYYRRQLPNGDIYVDIGTTEGLLPRRNQSSRESYGSNDKIKC 183
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
Y+ V + +RG +V+LSRT P + KLF +EVPEI + + + R+ G R K+AV S
Sbjct: 184 YVEKVEKAERGLRVVLSRTSPDLIRKLFEVEVPEIAQNQIDIIKIVREAGYRTKVAVASR 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DE 303
+ IDPVGACVG++G+R+Q +++E+ EKIDI+ + + ++ NAL PA V VV+ D+
Sbjct: 244 NDDIDPVGACVGLKGNRIQTIMSEIEGEKIDILRYDTNPVNYIRNALSPAQVKDVVVLDK 303
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
++ IV QLSLAIG++G NVRLA++L W ID+ T+ +
Sbjct: 304 NIYHAVAIVEDTQLSLAIGKQGLNVRLANKLVDWMIDVKTQSQFDEMDIAKEARFKAESF 363
Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423
+ + L F + E ++ DE+
Sbjct: 364 FGTG-EPVFEEALPQLEFENTEVAVESEVETF-----VDEDEIA---------------- 401
Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483
L +P +DS + L + + ++E+ S +DL G+ + I
Sbjct: 402 -------------LSELP-LDSMLLKKLQFHDVYSVEEFINLSDEDLTGFGDLSEEEIIA 447
Query: 484 F-DGFLSSLGTPKDQ 497
D + +D+
Sbjct: 448 IKDTINEYVDIVEDE 462
>gi|257068213|ref|YP_003154468.1| transcription termination factor NusA [Brachybacterium faecium DSM
4810]
gi|256559031|gb|ACU84878.1| transcription termination factor NusA [Brachybacterium faecium DSM
4810]
Length = 328
Score = 276 bits (707), Expect = 5e-72, Method: Composition-based stats.
Identities = 117/339 (34%), Positives = 194/339 (57%), Gaps = 24/339 (7%)
Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71
A+ E+ I V+L + ++ A + D V I+ TG++++
Sbjct: 7 ALRALERERDIRLPVLLDAIRSALHAAYLHTDHPVRDSEVLIDESTGEVAV--------- 57
Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131
+AR+RD + D P +FGRVA +A+QVI Q++R+ E +
Sbjct: 58 -----------IARERDADGVVVEEWDD--TPENFGRVAASTARQVIFQRIRDLEDEAVL 104
Query: 132 LEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190
E+ D+ +I+SG +++ + V+VDLG + V+ E + E+ G R+++Y+ + R
Sbjct: 105 GEYADRADDIVSGIIQQGRDPRMVLVDLGEVEAVLPPHERVPGEDYSHGRRLRAYVTEAR 164
Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250
R +GPQ+ LSR+HP + +LF +EVPE+ +G V++ ++R+ G R K++V ++ ++
Sbjct: 165 RGPKGPQITLSRSHPNLVRRLFDLEVPEVADGTVEITGLAREAGHRTKMSVRATVPGVNA 224
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIE 309
G+C+G G+RV++V+ EL EKIDIV + D AT+V NAL P+ V+ V +DE +
Sbjct: 225 KGSCIGPMGARVRSVMNELGGEKIDIVDFDEDPATYVANALSPSKVSSVTVIDEVGRAVR 284
Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
+VP+ QLSLAIG+ GQN RLA++LTGW IDI +
Sbjct: 285 AVVPETQLSLAIGKDGQNARLAAKLTGWKIDIRPDSAPD 323
>gi|313676538|ref|YP_004054534.1| nusa antitermination factor [Marivirga tractuosa DSM 4126]
gi|312943236|gb|ADR22426.1| NusA antitermination factor [Marivirga tractuosa DSM 4126]
Length = 413
Score = 276 bits (707), Expect = 6e-72, Method: Composition-based stats.
Identities = 133/410 (32%), Positives = 237/410 (57%), Gaps = 10/410 (2%)
Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
+ L L++ A +K+IDR ++ ++ D + R Y T + + IN + GD+ ++
Sbjct: 1 MDTLNLIESFADFARQKNIDRPTMIRILEDVFKTMIRKKYETDDNFDIIINADKGDLEIW 60
Query: 64 RLLEVVEEVENY---TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
R E+V++ +ISL AR +P +IG V++ + FGR AV +A+Q +IQ
Sbjct: 61 RFREIVDDNSEDIWDHDKISLTEARKIEPDFEIGEEVAEEVELEHFGRRAVTTARQTLIQ 120
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPG 179
KV++ E+D + ++ + VGEII+G V ++ ++ D ++ V+ + E I ++ R G
Sbjct: 121 KVKDLEKDILFNKYSELVGEIIAGEVYQILSRETLLTDADGNELVLLKSEQIPKDRFRKG 180
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
D V++ ++ V + P+++LSRT P F+ +LF EVPE+Y+ ++ +K + R+PG RAK+
Sbjct: 181 DSVRAVVHRVEMQNGNPKIILSRTSPVFLERLFEQEVPEVYDELITIKKIVREPGERAKV 240
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
+V S D IDPVGACVGM+GSR+ ++V EL++E ID++ ++ + ++ AL PA ++ +
Sbjct: 241 SVESYDDRIDPVGACVGMKGSRIHSIVRELQNENIDVINYTENMELYIQRALSPAKLSSM 300
Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
+D + R+ V + +Q+SLAIG+ GQN++LAS+L G ID+ E D+ +E
Sbjct: 301 KIDVENKRVSVYLKPDQVSLAIGKGGQNIKLASKLVGMEIDVFRELTDAEEEDVLIDEFN 360
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409
+++ + L G + + + E+ + +EET EI
Sbjct: 361 DV------LEDWVIEELKKVGLDTAKRVLELGREELVRMTDLEEETIDEI 404
>gi|282859024|ref|ZP_06268160.1| transcription termination factor NusA [Prevotella bivia JCVIHMP010]
gi|282588192|gb|EFB93361.1| transcription termination factor NusA [Prevotella bivia JCVIHMP010]
Length = 421
Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats.
Identities = 138/413 (33%), Positives = 237/413 (57%), Gaps = 8/413 (1%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
+ +R +++ KSIDR ++SV+ +S + ++G+ + V +NP+ GD
Sbjct: 6 IEEDRPNMIETFKEFKDTKSIDRTTLMSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFE 65
Query: 62 LFRLLEVVEEVENY--TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119
++R VV + + +ISL AR +P ++G VS+ + FGR A+ + +Q +
Sbjct: 66 IYRNRVVVADDDVEDENKEISLTDARKLEPDFEVGEDVSEKIDFNKFGRRAILNLRQTLA 125
Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRP 178
KV E E D Y ++KD+VG+II+G V + + ++VD N++ ++ + E I R+N R
Sbjct: 126 SKVLELEHDSLYNKYKDRVGQIITGEVYQTWKREVLLVDEDNNEMILPKGEQIPRDNYRK 185
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
G+ +++ I+ V E P+++LSRT P+F+ +L EVPEI +G++ +K ++R PG RAK
Sbjct: 186 GETIRAVIHRVDNENNNPKIILSRTAPEFLERLLEAEVPEINDGLIAIKKIARMPGERAK 245
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV S D IDPVGACVG+RGSRV +V EL +E ID++ W+ ++ F+ AL PA V+
Sbjct: 246 IAVESFDERIDPVGACVGVRGSRVHGIVRELCNENIDVITWTANTKLFIQRALAPAKVSS 305
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
+ +DE+ + EV + E++SLAIGR G N++LAS LTG+TID+ E +++ + +
Sbjct: 306 LTIDEENKKAEVYLQPEEVSLAIGRGGLNIKLASMLTGYTIDVFRELDENDAEDDIYLDE 365
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411
+D+ + + + G ++ + +EET +
Sbjct: 366 FSD-----EIDQWVIDAIKSIGMETARQVLNAPREMLIEKADLEEETVDNVLN 413
>gi|168704029|ref|ZP_02736306.1| transcription elongation factor NusA [Gemmata obscuriglobus UQM
2246]
Length = 497
Score = 276 bits (706), Expect = 7e-72, Method: Composition-based stats.
Identities = 152/426 (35%), Positives = 234/426 (54%), Gaps = 36/426 (8%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+L++ D + E+ I +DV+ ++ +IQ AA + + V I+ TG I
Sbjct: 13 ILELVDKLHEERKIAKDVIFKGISSAIQVAAERHFQVEEGVFVSIDEATGHIV------- 65
Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
G L P+ GR+A QSAKQ+IIQK+REAE D
Sbjct: 66 ----------------------AKYGD---QELDPITLGRIAAQSAKQMIIQKIREAESD 100
Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
+ EF K E++ GTV RV+ G IV LG S+ ++ R E I E G+RVK+ I +
Sbjct: 101 TVFTEFTGKKYELLVGTVTRVDAGTAIVSLGKSEALLPRSEQIPGETHHVGERVKAIIME 160
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
VR++ +++LSR HP+F+ LF E+PEI I+ ++AV+R+ G R+K+AV S D +
Sbjct: 161 VRKQGNRVKIVLSRAHPEFVKALFEEEIPEIDERIIDIRAVAREAGYRSKVAVTSIDMKV 220
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308
D VGACVG+RGSR++ V+ EL E+IDIV W+ + NAL+PA ++ V +GR
Sbjct: 221 DAVGACVGVRGSRIKNVIEELNGERIDIVRWNDALQVLIPNALQPAQISDVFTYPKLGRA 280
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368
V+V +QLSLAIGRRGQNVRLAS+L GW I+I+T +E + ++ Q
Sbjct: 281 IVLVTDDQLSLAIGRRGQNVRLASKLVGWDIEIMTHDELAEALERAERWFGQLPH----A 336
Query: 369 DEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKI 428
+ + L+ EGF ++ +A G +E A E+ A EY + ++ +++++
Sbjct: 337 SPELTNALIEEGFLSYNDITMTDDEGLAEFTGLTQEAADEVVMYAEEYADVMERSVEEER 396
Query: 429 RELGVS 434
R+ ++
Sbjct: 397 RQAELA 402
>gi|118617680|ref|YP_906012.1| transcription elongation factor NusA [Mycobacterium ulcerans Agy99]
gi|118569790|gb|ABL04541.1| N utilization substance protein a NusA [Mycobacterium ulcerans
Agy99]
Length = 347
Score = 276 bits (706), Expect = 7e-72, Method: Composition-based stats.
Identities = 128/365 (35%), Positives = 197/365 (53%), Gaps = 31/365 (8%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ A+ ++ I + +L + ++ A R G +D R+EI+ +TG + +
Sbjct: 5 MAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVM------ 58
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
AR+ D ++ D P FGR+A +A+QV++Q+ R+AE +R
Sbjct: 59 --------------ARETDDDGNVISEWDD--TPEGFGRIAATTARQVMLQRFRDAENER 102
Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDR 181
Y EF + GEI++G ++R N V+V +G+ S+GVI E + E+ G+R
Sbjct: 103 TYGEFSTREGEIVAGVIQRDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNR 162
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV
Sbjct: 163 LRCYVVGVSRGSREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV 222
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV- 300
S+ ++ GAC+G G RV+ V++EL EKIDI+ + D FV NAL PA V V
Sbjct: 223 RSNVPGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDEDPGRFVANALSPAKVVSVSV 282
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+D+ V+VP QLSLAIG+ GQN RLA++LTGW IDI + + +
Sbjct: 283 IDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWWIDIRGDSPEQSAEHPERGASRG 342
Query: 361 FFMQA 365
Sbjct: 343 LAHDH 347
>gi|255994863|ref|ZP_05427998.1| transcription termination factor NusA [Eubacterium saphenum ATCC
49989]
gi|255993576|gb|EEU03665.1| transcription termination factor NusA [Eubacterium saphenum ATCC
49989]
Length = 367
Score = 276 bits (706), Expect = 7e-72, Method: Composition-based stats.
Identities = 138/360 (38%), Positives = 214/360 (59%), Gaps = 1/360 (0%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+++ + E I +D ++ +M +S+ A YG S V+I+ +TG +
Sbjct: 2 NKEIIEALGQIEKETGIAKDELIDMMKESVLHAFHKNYGEDSRAEVQIDEDTGGTYVIVS 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
++V EVEN ++SL + D + GGVV + FGR+A Q+AKQV +QK++E
Sbjct: 62 KDIVLEVENPETEVSLDEMKAIDERYEEGGVVQYTVDASKFGRIAAQTAKQVFLQKIKER 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
E+ + + EFK + GEII+G V RV + V L + +I E I E GDR+K+
Sbjct: 122 EKQKIFSEFKGREGEIITGKVSRVTMRAIHVALNTTTAIIPLAEQIQGETYEVGDRIKAC 181
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I V QRGPQ++LSR PQF+ +LF EVPEI NG V++ ++R+ G+R K+AV+S +
Sbjct: 182 IKTVEDRQRGPQIVLSRRSPQFVEELFKREVPEIENGTVKIMGIAREAGNRTKIAVYSDN 241
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+D VGAC+G+RG+R+ A++ +L EK+D+V+W+ D FV A++PA +++L E+
Sbjct: 242 EELDAVGACIGVRGTRIGAILDDLGYEKVDVVLWNEDPVKFVKEAIKPAFPDRIILLEED 301
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
I VIV ++LSLAIGR+GQNVRLAS+L +ID+ T++ F +
Sbjct: 302 KVI-VIVADDELSLAIGRKGQNVRLASKLCKMSIDVKTKDGLKEMIDNGEITGIDFEEEE 360
>gi|269120926|ref|YP_003309103.1| NusA antitermination factor [Sebaldella termitidis ATCC 33386]
gi|268614804|gb|ACZ09172.1| NusA antitermination factor [Sebaldella termitidis ATCC 33386]
Length = 358
Score = 276 bits (705), Expect = 8e-72, Method: Composition-based stats.
Identities = 131/330 (39%), Positives = 203/330 (61%), Gaps = 3/330 (0%)
Query: 28 LSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDR 87
L + ++ A + YG + V+IN +TG++ +F E+V+EVEN +ISL A++
Sbjct: 28 LEAVETALLAAYKKNYGEKENAEVKINHDTGEVKVFSRKEIVDEVENPEYEISLDDAKNF 87
Query: 88 DPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVK 147
+GGVV + DF R A+Q+AKQ++IQKVRE E+ Y FK+K I++G V+
Sbjct: 88 KKRAKVGGVVELEINAEDFKRNAIQNAKQIVIQKVRECEKQNIYNNFKEKENSIVTGIVR 147
Query: 148 R-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQ 206
+ E G++ +D+ + +I E + + GDRVK YI V + + +SR +
Sbjct: 148 KVDEKGSLYIDINGLEAIIPEKELSDTDVFKQGDRVKVYIGKVEEGTKFTKTFISRKSEE 207
Query: 207 FMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVV 266
+ KLF +E+PEI +G++ +K+V+R+ GSR K+A++S D ++D GAC+G G R+Q+++
Sbjct: 208 MIRKLFDLEIPEIEDGVIVIKSVAREAGSRTKVAIYSDDPNLDVKGACIGKGGMRIQSII 267
Query: 267 TELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG--RIEVIVPKEQLSLAIGRR 324
EL+ EKIDIV+W+ D FV NAL PA V V + ED G +V V +QLSLAIG++
Sbjct: 268 DELKGEKIDIVLWNEDIRYFVKNALNPAEVISVEIIEDNGEEVAKVEVASDQLSLAIGKK 327
Query: 325 GQNVRLASQLTGWTIDIITEEEDSINRQKD 354
GQN RLA++L G IDI T E + ++
Sbjct: 328 GQNSRLAAKLCGIKIDIFTSELPDDSEPEE 357
>gi|313886723|ref|ZP_07820432.1| transcription termination factor NusA [Porphyromonas
asaccharolytica PR426713P-I]
gi|312923825|gb|EFR34625.1| transcription termination factor NusA [Porphyromonas
asaccharolytica PR426713P-I]
Length = 469
Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats.
Identities = 135/469 (28%), Positives = 242/469 (51%), Gaps = 28/469 (5%)
Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77
K+ID + +L V+ DS + ++G+ + V IN ++GD ++R EVV + VE
Sbjct: 21 KNIDEETMLHVLEDSFRSILAKMFGSDDNFDVIINADSGDFEIWRTREVVADDAVERENE 80
Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137
Q++ AR+ DP +IG V+D + + FGR A+ + +Q + K+ + +++ Y F ++
Sbjct: 81 QVAYTEAREIDPEAEIGDDVTDSVDFLSFGRRAIVNLRQTLSSKILDLQKEHFYQTFIER 140
Query: 138 VGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196
VGE+I+ V + + ++VD ++ ++ + E I E R GD V + I V E P
Sbjct: 141 VGELITAEVYQVWKRETLLVDEDGNELIMPKSEQIPDEYFRKGDSVHAVIARVDNENNNP 200
Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256
+V LSRT P+F+ +LF + VPEI +G++ +K V+R PG RAK+AV S D IDPVG+CVG
Sbjct: 201 RVTLSRTSPEFLKRLFEINVPEIADGLITIKRVARIPGVRAKIAVESYDDRIDPVGSCVG 260
Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316
M GSR++ +V EL E ID++ ++ + + F+ AL PA ++ + L + + EV + E
Sbjct: 261 MNGSRIRGIVRELHGENIDVLTYTANDSLFIQRALSPAKISSIELYPETAKAEVYLRPED 320
Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376
+ LAIG+ N++LAS LTG+ I++ + D+ +E + +++ + +L
Sbjct: 321 VPLAIGKNASNIKLASVLTGFEIEVFRDAADTTEEDIYLSEFSD------EIEDWVIKML 374
Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE 436
+ G + +E+ + ET + +R L +
Sbjct: 375 LDIGLNTARAVLTTSRTELLKKTDLEIETIDRV------------------LRILSSEFD 416
Query: 437 LCSIPGID-SKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
L + + + + L ++ I T +++A ++DL
Sbjct: 417 LEELEEMGLPQENIDLLKSPIPTQKEIAQAIIEDLKEDETTAEPQPTDE 465
>gi|223984472|ref|ZP_03634605.1| hypothetical protein HOLDEFILI_01899 [Holdemania filiformis DSM
12042]
gi|223963543|gb|EEF67922.1| hypothetical protein HOLDEFILI_01899 [Holdemania filiformis DSM
12042]
Length = 571
Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats.
Identities = 139/404 (34%), Positives = 225/404 (55%), Gaps = 5/404 (1%)
Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISL 62
N E L+ + ++ I +++V++ + +++ KA R +RV+IN G I +
Sbjct: 1 MNFKEFLKAMQTIEDDRKITKEIVIAALQEALAKAYRKHIDIPDVLVRVDINEANGQIHV 60
Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
++ VVEEVE+ +++L + D +G +V + GR A AK V+ QK+
Sbjct: 61 YQQYTVVEEVEDEELEVALADVK--DKGYQLGDLVDHEVDISQIGRAAALLAKNVMKQKI 118
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182
REAE+ Y E+ D++ E+++G ++ VE V+V+LG + ++ R I E G +
Sbjct: 119 REAEKQAVYDEYIDQLDEMVTGMIESVEEKFVVVNLGKTMALMPRAAQIPGERYVEGQSI 178
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
+ I + ++ +G QVL+SR+ + + +LF EVPEIY G+V++KA++R+ G R K+AV+
Sbjct: 179 RVVITECNKDTKGAQVLVSRSDAKLVKRLFEKEVPEIYQGVVEIKAIAREAGERTKMAVW 238
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
S++ +D +GAC+G RGSRVQ V+ EL+ EKIDI WS + + + NAL PA + V+
Sbjct: 239 SNNPDVDAIGACIGPRGSRVQVVIDELKGEKIDIFEWSDNISELIKNALAPAQILAVLPT 298
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT--EEEDSINRQKDFNERTQ 360
ED + V+V QLSLAIG++G+N RLA +LTG IDI T E E+ K +
Sbjct: 299 EDKRSLLVVVEDNQLSLAIGKKGKNARLAVKLTGMRIDIKTAGEIEEQGIDWKTMMLQFA 358
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404
Q ++ IA L G +VE + + EE
Sbjct: 359 AEEQKRLAEQRIAKQLEEAGVQEVETEPDDEQEAVIETPEVSEE 402
>gi|332300247|ref|YP_004442168.1| NusA antitermination factor [Porphyromonas asaccharolytica DSM
20707]
gi|332177310|gb|AEE13000.1| NusA antitermination factor [Porphyromonas asaccharolytica DSM
20707]
Length = 469
Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats.
Identities = 134/469 (28%), Positives = 242/469 (51%), Gaps = 28/469 (5%)
Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77
K+ID + +L V+ DS + ++G+ + V IN ++GD ++R EVV + VE
Sbjct: 21 KNIDEETMLHVLEDSFRSILAKMFGSDDNFDVIINADSGDFEIWRTREVVADDAVERENE 80
Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137
Q++ AR+ DP +IG V+D + + FGR A+ + +Q + K+ + +++ Y F ++
Sbjct: 81 QVAYTEAREIDPEAEIGDDVTDSVDFLSFGRRAIVNLRQTLSSKILDLQKEHFYQTFIER 140
Query: 138 VGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196
VGE+I+ V + + ++VD ++ ++ + E I E R GD V + I V E P
Sbjct: 141 VGELITAEVYQVWKRETLLVDEDGNELIMPKSEQIPDEYFRKGDSVHAVIARVDNENNNP 200
Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256
+V LSRT P+F+ +LF + VPEI +G++ +K V+R PG RAK+AV S D IDPVG+CVG
Sbjct: 201 RVTLSRTSPEFLKRLFEINVPEIADGLITIKRVARIPGVRAKIAVESYDDRIDPVGSCVG 260
Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316
M GSR++ +V EL E ID++ ++ + + F+ AL PA ++ + L + + EV + E
Sbjct: 261 MNGSRIRGIVRELHGENIDVLTYTANDSLFIQRALSPAKISSIELYPETAKAEVYLRPED 320
Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376
+ LAIG+ N++LAS LTG+ I++ + D+ +E + +++ + +L
Sbjct: 321 VPLAIGKNASNIKLASVLTGFEIEVFRDAADTTEEDIYLSEFSD------EIEDWVIKML 374
Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE 436
+ G + +E+ + ET + +R L +
Sbjct: 375 LDIGLNTARAVLTTSRTELLKKTDLELETIDRV------------------LRILSSEFD 416
Query: 437 LCSIPGID-SKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
L + + + + L ++ + T +++A ++DL
Sbjct: 417 LEELEEMGLPQENIDLLKSPVPTQKEIAQAIIEDLKEDETTAEPQPTDE 465
>gi|328948922|ref|YP_004366259.1| NusA antitermination factor [Treponema succinifaciens DSM 2489]
gi|328449246|gb|AEB14962.1| NusA antitermination factor [Treponema succinifaciens DSM 2489]
Length = 484
Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats.
Identities = 124/374 (33%), Positives = 197/374 (52%), Gaps = 3/374 (0%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLL 66
E+ A++ EK ID + + I A + +G + V+ + D++++
Sbjct: 3 EMADAIRALSAEKGIDESSIRQTIERMILAAYQKSFGKGYDNCIVKFADDMSDVNVYARK 62
Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM-DFGRVAVQSAKQVIIQKVREA 125
VV+ V + +I L+ A+ P I + PL P DF R AV KQ + + E
Sbjct: 63 TVVDGVYDPVIEIELEEAQKLAPEAVIHDTLDIPLDPKRDFERGAVSVGKQEAHKDLNEN 122
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
+ E+K+K+G+II G +R GN+ V+LG +GV+ RE DR+++
Sbjct: 123 SSKKLLDEYKEKLGQIIIGYYQREHKGNIYVELGKVEGVLPVKYQSPREVYEKNDRIRAL 182
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
I DV++ G QV+LSRT F+ + +EVPEI + + VK++SR+PG R K+AV S+
Sbjct: 183 IKDVKKVPSGIQVVLSRTDENFVKSILELEVPEIQDNTIVVKSISREPGYRTKIAVASNK 242
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304
+DPVGACVG++G R+Q V+ EL EKID++ + D F+ NAL PA V VV+ D +
Sbjct: 243 IDVDPVGACVGLKGVRIQNVIRELEGEKIDVLRYDEDPHVFIKNALSPAEVKHVVIKDAE 302
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+V E S+AIG++G NVRLA++L W+ID+ TE + + + R
Sbjct: 303 KREALAVVSDENFSIAIGKQGLNVRLANRLCNWSIDVKTEAMVTDEDLVENDTRRAAEEL 362
Query: 365 AINVDEIIAHLLVA 378
+ ++
Sbjct: 363 FGGSENESYEEILT 376
>gi|320537771|ref|ZP_08037693.1| transcription termination factor NusA [Treponema phagedenis F0421]
gi|320145361|gb|EFW37055.1| transcription termination factor NusA [Treponema phagedenis F0421]
Length = 488
Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats.
Identities = 148/445 (33%), Positives = 238/445 (53%), Gaps = 18/445 (4%)
Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV 72
A EK +D D+ ++ +++ A ++ + T + V +S++ +VV+EV
Sbjct: 9 IRRFAQEKEMDEDLAFKIVEQTLKAAYKTTFKTDENAVVTFGDN--HVSIYSRKKVVDEV 66
Query: 73 ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYL 132
++ +I L+ A+ + ++G + L P +F R +VQ+A Q I Q RE ++D Y
Sbjct: 67 DDDVTEIDLEDAKKLTENAELGDELLVELDPENFKRGSVQAAVQRIHQLSRELQKDSLYA 126
Query: 133 EFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192
E+K K GEII G +R+ G++ VDLG +GV+ R I E DR+K+ I +V++
Sbjct: 127 EYKSKEGEIIIGYFQRMREGSIYVDLGKVEGVLPRKYQIPGEEFHQNDRIKALIREVKKH 186
Query: 193 Q-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPV 251
Q Q++LSRT F+ L E+PEIY+GIV++ + R+PG R K+AVF+ IDPV
Sbjct: 187 QSNLVQLILSRTDADFVRGLLSSEIPEIYDGIVEIHKIVREPGYRTKVAVFTRREDIDPV 246
Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEV 310
GACVG RG+R+Q ++ EL DEKID+V +S D A F+ NAL PA V V++ DE+
Sbjct: 247 GACVGQRGARIQTIIKELDDEKIDVVEYSDDPAEFIRNALSPAEVLNVIILDEEKRSALA 306
Query: 311 IVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR--------------QKDFN 356
+V QLS+AIG++G NVRLA++L W+ID+ TE++ + +
Sbjct: 307 VVSDSQLSIAIGKQGLNVRLANRLADWSIDVKTEKQFAEMEVVTDSRKAAEELFSDDEEV 366
Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416
+ N+D I +L G ++E L + +E+ ++EG E E+ E
Sbjct: 367 AEYDIQEELPNLDPAIITILHQNGIKEIETLVNLSENEVRALEGMTSEYVEELFKEINEN 426
Query: 417 LEGIDITLQKKIRELGVSEELCSIP 441
E + + + E+L
Sbjct: 427 FEIVQEERIDEPEQTNTEEQLPEYE 451
>gi|325677914|ref|ZP_08157556.1| transcription termination factor NusA [Ruminococcus albus 8]
gi|324110468|gb|EGC04642.1| transcription termination factor NusA [Ruminococcus albus 8]
Length = 372
Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats.
Identities = 140/359 (38%), Positives = 208/359 (57%), Gaps = 22/359 (6%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+ + E IDR+V++ + D+I KA + G+ ++RV+I+P TG + ++ L
Sbjct: 2 NEQFFNALADLVSENEIDREVLIEKIRDAITKAIKKETGSE-NVRVDIDPATGKLEMYIL 60
Query: 66 LEV--VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
EV V V+ +I + A+ DP I +G V P+ P GRVA Q AKQ I ++
Sbjct: 61 KEVMKVMFVDEPENEIYIGEAQAYDPDIKVGDFVEIPVNPAKIGRVAAQFAKQSIKHDIK 120
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY--GNVIVDLGNSDGVIRRDETISRENLRPGDR 181
+ ER++ ++KD+ EI++ TV++VE GN I+ + ++ R E I E L+ GD+
Sbjct: 121 DFERNKLIEQYKDREHEIVTATVQKVEPATGNAIITIDKNEHYFYRSEQIPGEVLKEGDK 180
Query: 182 VKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
+K YI + E+R P V LSRTH + +LF +EVPEI +G V+VKA+SR G R+K+A
Sbjct: 181 IKVYIVSLGDSEKRQPVVKLSRTHKDLVKRLFELEVPEIADGTVEVKAISRTEGVRSKIA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V+S D ++D VGAC+G + SR+ AV EL+ EKID++ W D F+ AL PA V KV
Sbjct: 241 VWSKDPNVDAVGACIGPKKSRITAVCQELKGEKIDVINWVEDEEQFIAKALAPAEVLKVE 300
Query: 301 LDEDV----------------GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343
L E + V+VP Q SLAIG +GQN +LA+ LTG+ IDI+
Sbjct: 301 LLEPEVRIEHKGEEKEFERVIKKCRVVVPNNQFSLAIGNKGQNAKLAAGLTGYKIDIVP 359
>gi|255536444|ref|YP_003096815.1| transcription elongation factor NusA [Flavobacteriaceae bacterium
3519-10]
gi|255342640|gb|ACU08753.1| Transcription termination protein NusA [Flavobacteriaceae bacterium
3519-10]
Length = 415
Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats.
Identities = 123/419 (29%), Positives = 228/419 (54%), Gaps = 7/419 (1%)
Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
+ L L++ EKSI + +++++ DS++ R + + V +NP+ GD +F
Sbjct: 1 MDGLALIEAFGDFKEEKSISKIDLMAIIEDSLKTLLRKRFDSDDHFDVIVNPDKGDFQIF 60
Query: 64 RLLEVVEEV--ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
+VE+ E+ +I + A+ DP+ ++G + +P GR ++ + KQ++ K
Sbjct: 61 LNKTIVEDDMSEDDDLEIEISEAKKIDPTFEVGEEFTIEIPIEGLGRRSILTLKQILATK 120
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGD 180
++E Y EF+DK+GEI+ G V + + +VI +D +++ ++ ++ I + + G+
Sbjct: 121 LQEHNNAVLYEEFRDKIGEIVVGEVHHIRHKHVILLDDEDNEFILPKENQIPSDFFKKGE 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
+++ + V + PQ+++SRT P+F+ KL +E+PEI +G + +K V R PG +AK+A
Sbjct: 181 NIRTIVESVDFKGSKPQIIVSRTAPKFLEKLLELEIPEIQDGTIILKKVVRIPGEKAKIA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V + D IDPVGACVG++GSR+ VV EL++E ID++ WS + V AL V K+
Sbjct: 241 VDAYDDRIDPVGACVGVKGSRIHGVVRELKNENIDVIQWSKNPEIMVKRALGNVTVNKIE 300
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
++E+ V P E++S IG++GQN+RLAS L+G+ ID+ E + + + +
Sbjct: 301 INEETKYAMVYTPVEEISRVIGKQGQNIRLASWLSGYEIDVHRESAEDDDVELKEFAGSD 360
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
++++ I G + + + + +EET E++ +E E
Sbjct: 361 AG----DIEQWIIDEFNKVGLTTAKSVLDKDTEALLKMVDLEEETIEEVKQILKEEFED 415
>gi|294675008|ref|YP_003575624.1| transcription termination factor NusA [Prevotella ruminicola 23]
gi|294472210|gb|ADE81599.1| transcription termination factor NusA [Prevotella ruminicola 23]
Length = 408
Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats.
Identities = 129/402 (32%), Positives = 225/402 (55%), Gaps = 8/402 (1%)
Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77
K+IDR ++SV+ +S + ++G+ + V +NP+ GD + R VV + V +
Sbjct: 12 KNIDRTTLVSVLEESFRNVIAKIFGSDENFDVIVNPDKGDFEIHRNRVVVPDGEVMDENK 71
Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137
+I L A+ +P ++G VS+ + FGR A+ + +Q + K+ E E D Y ++KDK
Sbjct: 72 EIELSEAQKIEPDYEVGEEVSEEVQFAKFGRRAILNLRQTLASKILELEHDSLYQKYKDK 131
Query: 138 VGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196
V +++SG V + + +++D ++ + + E I +N G+ V++ + +V+ E P
Sbjct: 132 VHQVVSGEVYQIWKREVLLIDDEGNELHLPKQEQIPGDNYHKGETVRAVVKEVQNENNNP 191
Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256
+++LSRT P F+ +L EVPEI +G++ +K V+R PG RAK+AV S D IDPVGACVG
Sbjct: 192 RIILSRTSPVFLERLLEAEVPEIQDGLITIKRVARIPGDRAKVAVESYDDRIDPVGACVG 251
Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316
++GSRV +V EL +E ID++ +S ++ F+ AL PA ++ + LD++ + EV + E+
Sbjct: 252 VKGSRVHGIVRELCNENIDVINYSANTQLFIQRALSPAKISSINLDQENHKAEVYLQPEE 311
Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376
+SLAIGR G N++LAS LT +TID+ + + + + +D+ + +
Sbjct: 312 VSLAIGRGGMNIKLASMLTEYTIDVFRVLNEGEADEDIYLDEFSD-----EIDQWVIDAI 366
Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
A G + + + +EET ++ R E
Sbjct: 367 KAIGLDTAKAVLNAPREMLIEKADLEEETVDQLLDVLRAEFE 408
>gi|120403303|ref|YP_953132.1| transcription elongation factor NusA [Mycobacterium vanbaalenii
PYR-1]
gi|119956121|gb|ABM13126.1| NusA antitermination factor [Mycobacterium vanbaalenii PYR-1]
Length = 333
Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats.
Identities = 130/349 (37%), Positives = 196/349 (56%), Gaps = 31/349 (8%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ A+ +K I DVV+ + ++ A R G +D ++I+ +TG + +
Sbjct: 1 MAALHAIEADKGISVDVVVDTIKSALLTAYRHTEGHEADAHIDIDRKTGAVKV------- 53
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
+AR D ++ + P FGR+A +A+QVI+Q++R+AE ++
Sbjct: 54 -------------IARQTDEDGNV--LHEWDDTPEGFGRIAATTARQVILQRLRDAENEK 98
Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETISRENLRPGDR 181
Y EF + G+I++G ++R N V+V +G S+GVI E + E GDR
Sbjct: 99 NYGEFSAREGDIVAGVIQRDARANARGLVVVRMGSETKGSEGVIPAAEQVPGERYEHGDR 158
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV
Sbjct: 159 LRCYVVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV 218
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV- 300
+ ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V
Sbjct: 219 ATRAPGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVTV 278
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
+DE VIVP QLSLAIG+ GQN RLA++LTGW IDI +++
Sbjct: 279 IDEAARAARVIVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDDAAKE 327
>gi|124002855|ref|ZP_01687707.1| transcription termination factor NusA [Microscilla marina ATCC
23134]
gi|123992083|gb|EAY31470.1| transcription termination factor NusA [Microscilla marina ATCC
23134]
Length = 423
Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats.
Identities = 126/413 (30%), Positives = 226/413 (54%), Gaps = 12/413 (2%)
Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
++ E++ A K+ID+ ++ V+ + + R Y + + V +N E GD+ ++
Sbjct: 1 MDKQEIISSFAEFARAKNIDKVLMEQVLEEVFRTMIRKKYTSDENFDVIVNIEDGDLEMY 60
Query: 64 RLLEVVEEVENYTCQ---ISLKVARDRDPSI---DIGGVVSDPLPPMDFGRVAVQSAKQV 117
R +VE+ + ++L A+ DP I DIG + DFGR A+ +A+Q
Sbjct: 61 RNRIIVEDDSPEAQELDKVTLSEAKKIDPEIAEEDIGDEFPQTVYLSDFGRRAILTARQT 120
Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENL 176
+IQK+++ E++ YL++KD EI+ V ++ +++D ++ + ++E I ++
Sbjct: 121 LIQKIKDVEKENLYLKYKDMTDEIVVTEVHQILSRELLLLDSEGNELSLPKNELIPKDRY 180
Query: 177 RPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236
R G+ K+ ++ V P+++LSRT P F+ +LF E+PE+Y+G++ +K V R PG R
Sbjct: 181 RKGEMSKAVVHRVDMINGNPKIILSRTSPIFLERLFESEIPEVYDGLITIKKVVRQPGER 240
Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296
AK+AV S D IDPVGACVGM+GSR+ ++V EL +E ID++ ++ + ++ AL PA +
Sbjct: 241 AKVAVESYDDRIDPVGACVGMKGSRIHSIVRELNNENIDVINYTDNLDLYITRALSPAKI 300
Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356
T + + ED GR+ V + +Q+SLAIG+ G N++LAS+L G ID+ + ++ +
Sbjct: 301 TSIKM-EDDGRVSVFLKPDQVSLAIGKGGHNIKLASKLVGMEIDVYRDMDEYEIEEDIEL 359
Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409
++ I L G + + V + + +EET +
Sbjct: 360 SEFDDE----EIEPWIRDELRRLGMETAKSVLNVGRELLINRSELEEETVDYL 408
>gi|325954923|ref|YP_004238583.1| NusA antitermination factor [Weeksella virosa DSM 16922]
gi|323437541|gb|ADX68005.1| NusA antitermination factor [Weeksella virosa DSM 16922]
Length = 411
Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats.
Identities = 130/419 (31%), Positives = 232/419 (55%), Gaps = 11/419 (2%)
Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
+ L L++ +K+IDR +++++ +++Q R YG+ + + +NP+ GD+ ++
Sbjct: 1 MDNLALIESFGDFKDDKNIDRITLMAIIEEALQVVLRKKYGSDDNFDIIVNPDKGDLEIW 60
Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
VVE+ E+ + +I L AR +P +IG VS+ +P + GR A+ + +Q + K
Sbjct: 61 HNRIVVEDGFSEDDSAEIELSEARKIEPDFEIGEEVSELIPIENLGRRAILTLRQTLSAK 120
Query: 122 VREAERDRQYLEFKDKVGEIISGTV-KRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
+ E + Y +FK+ GEI+SG V +I+D ++ ++ ++ I + R G+
Sbjct: 121 IMEHDNANLYDKFKELEGEIVSGEVHHIRHKHIIIMDDEQNEMILPKENQIPSDFFRKGE 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
V++ + +V PQ++LSRT P+F+ KLF E+PEI++G++ +K V R PG +AK+A
Sbjct: 181 TVRAIVDEVVLRGAKPQIVLSRTAPKFLEKLFEQEIPEIFDGLITIKKVVRIPGEKAKVA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S D IDPVGACVGM+GSR+ ++V ELR+E ID++ ++ + ++ AL PA ++
Sbjct: 241 VESYDDRIDPVGACVGMKGSRIHSIVRELRNENIDVINYTTNLNLYIARALSPAKISSAE 300
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DE+ +I V V E++S AIG+ G NV+LAS+L IDI E + +
Sbjct: 301 IDEENHKILVHVKPEEVSKAIGKGGYNVKLASRLLDMEIDIFREGIQDEDVELTEFSD-- 358
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+D+ + A G + + ++++ +EET ++ +E E
Sbjct: 359 ------EIDQWVIEAFKAIGLDTAKSVLEQDVNDLIKRTDLEEETIEDVIRILKEEFED 411
>gi|225619365|ref|YP_002720591.1| transcription elongation factor NusA [Brachyspira hyodysenteriae
WA1]
gi|225214184|gb|ACN82918.1| putative transcription elongation factor NusA [Brachyspira
hyodysenteriae WA1]
Length = 496
Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats.
Identities = 126/448 (28%), Positives = 234/448 (52%), Gaps = 35/448 (7%)
Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV 72
++ EK I +++ V+A +++ A + YG + + + + ++++ VVEEV
Sbjct: 9 LQQLSDEKDISVELLKEVIASTMELALKKKYGDDIKFHIHFDNKN-NPTVYKGASVVEEV 67
Query: 73 ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMD-FGRVAVQSAKQVIIQKVREAERDRQY 131
N +ISL+ A+ D I++G V + ++ FGR+ A+ QK+ E E++ Y
Sbjct: 68 RNKNKEISLEEAKKLDQDINLGDEVLILVDQVEAFGRIESTVARTAFFQKISELEKNIIY 127
Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRR 191
EFK + ++++G +R G + ++LG ++G +++ + RE+ GDR+++YIY V+
Sbjct: 128 NEFKRRENQLVNGYFQREHRGTIYINLGKTEGELQKKDQSPREHYTVGDRIRAYIYKVQG 187
Query: 192 EQRGP------QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ ++LL+RT P F+ KLF +E+PEI +G +++K V R PG + K+AV S+
Sbjct: 188 GKDEKGKEIHTKILLTRTKPDFIKKLFELEIPEIADGTIEIKNVVRQPGLKIKVAVASNK 247
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304
+DP+GAC+G +G R+Q+++ E+ EKID+V WS D ++ A+ PA ++++ D +
Sbjct: 248 PEVDPIGACIGQKGIRIQSIIKEIEGEKIDVVKWSKDIREYIAEAITPAKPIRIIITDPE 307
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE------------------- 345
+I+P EQLSLA+G+ G NV+LASQLTG+ DI TE
Sbjct: 308 KKEAMIIIPDEQLSLALGKSGYNVKLASQLTGYYFDIKTETDIKENPELLKDIVPLNQIF 367
Query: 346 -------EDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASI 398
+ + + +DE I L+ +EEL + + +I
Sbjct: 368 SDNTEEVQAADEELETAEVFESNLYSLQGIDEAIIKTLIDNNINSIEELYNMSVEDIMEK 427
Query: 399 EGFDEETAVEIQGRAREYLEGIDITLQK 426
+ + + ++ +E ++ + +
Sbjct: 428 TNLERDIVDNLMLVMKDVVEVVEASDDE 455
>gi|218670845|ref|ZP_03520516.1| transcription elongation factor NusA [Rhizobium etli GR56]
Length = 276
Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats.
Identities = 199/274 (72%), Positives = 234/274 (85%)
Query: 165 IRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224
IRRDE I REN+R GDRV++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+
Sbjct: 2 IRRDEMIPRENVRYGDRVRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGII 61
Query: 225 QVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSA 284
QVK+V+RDPGSRAK+AV S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D A
Sbjct: 62 QVKSVARDPGSRAKIAVISNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSQDPA 121
Query: 285 TFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344
TFV+NAL+PA V KVVLDED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE
Sbjct: 122 TFVVNALQPAEVAKVVLDEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDIMTE 181
Query: 345 EEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404
E+S RQK+FNERT FM +++VDE++ +L +EGFA VEELA V + EIASI+GFDEE
Sbjct: 182 AEESERRQKEFNERTNLFMDSLDVDEMVGQVLASEGFAAVEELAYVDLDEIASIDGFDEE 241
Query: 405 TAVEIQGRAREYLEGIDITLQKKIRELGVSEELC 438
TA EIQ RARE+LE ++ + +K + LGV +EL
Sbjct: 242 TAQEIQQRAREFLERLEAEMDEKRKALGVEDELR 275
>gi|325294242|ref|YP_004280756.1| NusA antitermination factor [Desulfurobacterium thermolithotrophum
DSM 11699]
gi|325064690|gb|ADY72697.1| NusA antitermination factor [Desulfurobacterium thermolithotrophum
DSM 11699]
Length = 374
Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats.
Identities = 143/348 (41%), Positives = 216/348 (62%), Gaps = 20/348 (5%)
Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV 72
+ + EK I ++ V+ + I AAR G + V+I+ + D +F+ VVE+V
Sbjct: 8 VELLCREKGISKEDVVKAVKVGIINAARKA-GYKGHLVVKIDEDGKDFGIFQEKTVVEDV 66
Query: 73 ENYTCQISLKVARDR-DPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131
++ +ISL+ A++ S+ +G V + + GR+A ++A QVI +K+ EAER Y
Sbjct: 67 KDIDYEISLEEAKELFGDSVKLGDKVLVEIKTEELGRIAAKAAAQVIHEKISEAERKALY 126
Query: 132 LEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190
FK+KVG+IISGTVK ++ +VI+DLG G++ ++E IS+E R GDRV++YIYDV
Sbjct: 127 DYFKEKVGDIISGTVKEIKRNGDVILDLGRIVGILPKEEQISKEKYRIGDRVRAYIYDVV 186
Query: 191 REQRGP--------------QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236
+ + V+LSRTHP+F+ +L +E+PE+ +G+V++KAV+R+PG R
Sbjct: 187 FDYKRYNRRKPSKIDDYPPPYVILSRTHPKFLKRLMEIEIPEVADGLVEIKAVAREPGIR 246
Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296
AK+AV S + IDPVGAC+G++GSR+ + EL EKI+I+ W+ D A V L PA V
Sbjct: 247 AKVAVDSKEEYIDPVGACIGVKGSRILPISRELSGEKIEIIRWTDDVAELVARVLSPAKV 306
Query: 297 TKVVLDEDVG---RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
+ ED R+EV+VP +QLSLAIG+ G N RLAS+L G + I
Sbjct: 307 LQSESYEDENGELRVEVVVPDDQLSLAIGKHGVNARLASKLVGQIVGI 354
>gi|313140899|ref|ZP_07803092.1| transcription elongation factor NusA [Bifidobacterium bifidum NCIMB
41171]
gi|313133409|gb|EFR51026.1| transcription elongation factor NusA [Bifidobacterium bifidum NCIMB
41171]
Length = 344
Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats.
Identities = 116/331 (35%), Positives = 195/331 (58%), Gaps = 17/331 (5%)
Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV-VEEVE 73
+A E+ ID + + + + ++++ A RVE++ G +++ E+ VE E
Sbjct: 12 QLAIEQGIDLEQLDAALEEALRLAYLKTPHAAKHARVELDTRAGTFTVWARKEIPVEPTE 71
Query: 74 NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133
+ P+ ++G D P +FGR+A +A+QVI Q R+AE D+ +
Sbjct: 72 DDPH-----------PAPELGEEYDD--TPRNFGRLAAATARQVIGQLFRKAEDDKVFGA 118
Query: 134 FKDKVGEIISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRR 191
F + G++++G V++ + NV V +G+ + ++ R E + E R G+R++ Y+ +V R
Sbjct: 119 FSGQKGKLVTGIVQQDASDPTNVHVAIGDVEAILPRREQVPGERYRHGERLRVYVVNVAR 178
Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPV 251
+GP++++SR+HP+ + +LF EVPE+ +G V + A++R+ G+R K+AV ++ ++P
Sbjct: 179 GVKGPEIVVSRSHPELVRRLFEREVPELVSGAVSIMAIAREAGARTKIAVRANTDGVNPK 238
Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEV 310
GA +G G+RV+AV+ L EKIDIV WS D A FV +AL PA+ T V + E
Sbjct: 239 GALIGPGGARVRAVMENLGPEKIDIVDWSADPAKFVASALSPAVATGVQVISEKNKTAIA 298
Query: 311 IVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
+ +QLSLAIG+ GQN RLA++LTGW I I
Sbjct: 299 FIHDDQLSLAIGKEGQNARLAAKLTGWKIGI 329
>gi|224283743|ref|ZP_03647065.1| transcription elongation factor NusA [Bifidobacterium bifidum NCIMB
41171]
gi|310287990|ref|YP_003939249.1| transcription elongation factor NusA [Bifidobacterium bifidum S17]
gi|311064863|ref|YP_003971589.1| n utilization substance protein A NusA [Bifidobacterium bifidum
PRL2010]
gi|309251927|gb|ADO53675.1| transcription elongation factor NusA [Bifidobacterium bifidum S17]
gi|310867183|gb|ADP36552.1| NusA N utilization substance protein A [Bifidobacterium bifidum
PRL2010]
Length = 342
Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats.
Identities = 116/331 (35%), Positives = 195/331 (58%), Gaps = 17/331 (5%)
Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV-VEEVE 73
+A E+ ID + + + + ++++ A RVE++ G +++ E+ VE E
Sbjct: 10 QLAIEQGIDLEQLDAALEEALRLAYLKTPHAAKHARVELDTRAGTFTVWARKEIPVEPTE 69
Query: 74 NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133
+ P+ ++G D P +FGR+A +A+QVI Q R+AE D+ +
Sbjct: 70 DDPH-----------PAPELGEEYDD--TPRNFGRLAAATARQVIGQLFRKAEDDKVFGA 116
Query: 134 FKDKVGEIISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRR 191
F + G++++G V++ + NV V +G+ + ++ R E + E R G+R++ Y+ +V R
Sbjct: 117 FSGQKGKLVTGIVQQDASDPTNVHVAIGDVEAILPRREQVPGERYRHGERLRVYVVNVAR 176
Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPV 251
+GP++++SR+HP+ + +LF EVPE+ +G V + A++R+ G+R K+AV ++ ++P
Sbjct: 177 GVKGPEIVVSRSHPELVRRLFEREVPELVSGAVSIMAIAREAGARTKIAVRANTDGVNPK 236
Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEV 310
GA +G G+RV+AV+ L EKIDIV WS D A FV +AL PA+ T V + E
Sbjct: 237 GALIGPGGARVRAVMENLGPEKIDIVDWSADPAKFVASALSPAVATGVQVISEKNKTAIA 296
Query: 311 IVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
+ +QLSLAIG+ GQN RLA++LTGW I I
Sbjct: 297 FIHDDQLSLAIGKEGQNARLAAKLTGWKIGI 327
>gi|229496539|ref|ZP_04390253.1| transcription termination factor NusA [Porphyromonas endodontalis
ATCC 35406]
gi|229316436|gb|EEN82355.1| transcription termination factor NusA [Porphyromonas endodontalis
ATCC 35406]
Length = 455
Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats.
Identities = 128/427 (29%), Positives = 230/427 (53%), Gaps = 13/427 (3%)
Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77
K+ID++ +++V+ + ++GT + + ++PE GD+ ++R VV + V+N
Sbjct: 21 KNIDKETLINVLKSAFMSVLSKMFGTDENFTIIVSPEMGDLEIWRNRMVVADGSVQNPNL 80
Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137
+ISL A DP +IG V+D + FGR A+ + +Q + KV E +++ Y +F+++
Sbjct: 81 EISLSDALPLDPDAEIGSEVTDSINFASFGRRAILNLRQALQGKVLELQKENLYKKFQER 140
Query: 138 VGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196
VG+++S V + + ++VD ++ ++ + E I + R G+ V + I V E
Sbjct: 141 VGQMVSAEVYQVWKREALLVDDEGNELLLPKSEQIPGDYFRKGESVHAVIDHVDYENNNI 200
Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256
++ +SRT +F+ +LF + VPEI +G++ +K V+R PG RAK+AV S D IDPVGACVG
Sbjct: 201 KIYVSRTSQEFLKRLFELNVPEIGDGLITIKRVARIPGERAKMAVESYDDRIDPVGACVG 260
Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316
M GSR++ +V EL+ E ID++ ++ +S+ FV AL PA V+ + + + + EV + E+
Sbjct: 261 MNGSRIRGIVRELKGENIDVMSYTTNSSLFVQRALSPAKVSSIEILPEELKAEVYLSPEE 320
Query: 317 LSLAIGRRGQNVRLASQLTGWTIDI---ITEEEDSINRQKDFNERTQFFMQAINVDEIIA 373
+ +AIG+ N++LAS LTG+ I++ I E ++ +FN+ + ++ + +
Sbjct: 321 VPMAIGKNASNIKLASALTGYKIEVFRDIEENDEEDIFLNEFNDEIEDWVLEVLKNIGCN 380
Query: 374 HLLVAEGFADVEELACVKISEIAS-------IEGFDEETAVEIQGRAREYLEGIDITLQK 426
L E ++ + E FD E I A E E ++I
Sbjct: 381 TALSVLRIPRAELISKADLEESTVDHVLEVLSSEFDPEELERIGFTAPEATEEVEIEGGA 440
Query: 427 KIRELGV 433
+
Sbjct: 441 DSEDSKP 447
>gi|254821852|ref|ZP_05226853.1| transcription elongation factor NusA [Mycobacterium intracellulare
ATCC 13950]
Length = 348
Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats.
Identities = 130/365 (35%), Positives = 197/365 (53%), Gaps = 31/365 (8%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ A+ ++ I + +L + ++ A R G +D R+EI+ +TG + +
Sbjct: 5 MAALHAIEVDRGISVNELLETIKSALLTAYRHTEGHQNDARIEIDRKTGVVRV------- 57
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
+AR+ D ++ D P FGR+A +A+QV++Q+ R+AE +R
Sbjct: 58 -------------IARETDEDDNVISEWDD--TPEGFGRIAATTARQVMLQRFRDAENER 102
Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDR 181
Y EF + GEI++G ++R N V+V +G S+GVI E + E+ G+R
Sbjct: 103 TYGEFSTREGEIVAGVIQRDSRANARGLVVVRMGTETKASEGVIPAAEQVPGESYEHGNR 162
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V+ Y+ V R R P + LSRTHP + KLF +EVPEI + V++ AV+R+ G R+K+AV
Sbjct: 163 VRCYVIGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADESVEIVAVAREAGHRSKIAV 222
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV- 300
S+ ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V
Sbjct: 223 KSNLPGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSI 282
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+D V+VP QLSLAIG+ GQN RLA++LTGW IDI + + + T
Sbjct: 283 IDPSARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDSPGGHPENEPEHGATH 342
Query: 361 FFMQA 365
Sbjct: 343 GMAHD 347
>gi|50954461|ref|YP_061749.1| transcription elongation factor NusA [Leifsonia xyli subsp. xyli
str. CTCB07]
gi|50950943|gb|AAT88644.1| transcription termination/antitermination factor [Leifsonia xyli
subsp. xyli str. CTCB07]
Length = 332
Score = 273 bits (699), Expect = 5e-71, Method: Composition-based stats.
Identities = 119/350 (34%), Positives = 192/350 (54%), Gaps = 31/350 (8%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSL-------YGTMSDIRVEINPETGDISL 62
L + + E+ I + ++ ++ +I A +G RV ++ +TG +++
Sbjct: 5 LSVLRLMEREREIPFEELVQIIEQAILTAYLKHTDQADHRHGEPPAARVHLDRKTGHVTV 64
Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+ V E ++ I P DFGR+A +AKQVI Q++
Sbjct: 65 Y-----VPERDDDGNVIG-----------------EAEDSPSDFGRIAAFAAKQVINQRL 102
Query: 123 REAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
R+ D EF+ G+I++G +++ V +DLG+ + ++ +E + E G R
Sbjct: 103 RDLADDAVLGEFRGCEGDIVAGVIQQGPNPRMVHIDLGSVEAILPPEEQVHGEEYPHGSR 162
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++ Y+ V + +GP + +SRTHP + KLF +EVPEI +G+V++ +++R+ G R K+AV
Sbjct: 163 IRVYVTSVAKGPKGPSITVSRTHPTLVRKLFALEVPEIASGVVEIVSIAREAGHRTKIAV 222
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK-VV 300
+++ ++ GAC+G G RV+AV EL EKIDIV +SPD ATFV +AL PA VT V
Sbjct: 223 RATEPGVNAKGACIGELGQRVRAVTAELNSEKIDIVDYSPDLATFVSSALSPAKVTSAFV 282
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350
+DE + + +VP QLSLAIG+ GQN RLA++LTG IDI +
Sbjct: 283 IDESLKAVRALVPDYQLSLAIGKEGQNARLAAKLTGAKIDIQPDSILDRE 332
>gi|15827820|ref|NP_302083.1| transcription elongation factor NusA [Mycobacterium leprae TN]
gi|221230297|ref|YP_002503713.1| transcription elongation factor NusA [Mycobacterium leprae Br4923]
gi|20139308|sp|Q9Z5J1|NUSA_MYCLE RecName: Full=Transcription elongation protein nusA
gi|4455676|emb|CAB36568.1| putative transcriptional termination/antitermination factor
[Mycobacterium leprae]
gi|13093372|emb|CAC30509.1| probable transcription termination/antitermination factor
[Mycobacterium leprae]
gi|219933404|emb|CAR71653.1| probable transcription termination/antitermination factor
[Mycobacterium leprae Br4923]
Length = 347
Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats.
Identities = 127/347 (36%), Positives = 193/347 (55%), Gaps = 31/347 (8%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ A+ ++ I + +L + ++ A R G D R++I+ +TG + +
Sbjct: 5 MAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR---- 60
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
EV++ IS P FGR+A +A+QV++Q+ R+AE +R
Sbjct: 61 -EVDDDGNVIS-----------------EWDDTPEGFGRIAATTARQVMLQRFRDAENER 102
Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDR 181
Y EF + GEI++G ++R N V+V +G+ S+GVI E + E+ G+R
Sbjct: 103 TYGEFSTREGEIVAGVIQRDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNR 162
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ +V+R+ G R+K+AV
Sbjct: 163 LRCYVVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAV 222
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV- 300
S ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V
Sbjct: 223 ASRVPGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSV 282
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347
+D+ V+VP QLSLAIG+ GQN RLA++LTGW IDI +
Sbjct: 283 IDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDSPP 329
>gi|152991227|ref|YP_001356949.1| transcription elongation factor NusA [Nitratiruptor sp. SB155-2]
gi|151423088|dbj|BAF70592.1| transcription termination factor NusA [Nitratiruptor sp. SB155-2]
Length = 371
Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats.
Identities = 123/347 (35%), Positives = 198/347 (57%), Gaps = 9/347 (2%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
++ I D++A+EK + + V + + + A+ + G + EI+P+T I +F+ + V
Sbjct: 4 IVDIIDSIAHEKGLPVEQVKEAIQKAFENTAKKVLGEDLEFEAEIDPDTKSIKVFQKILV 63
Query: 69 VEEVEN-----YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
VE+ + I+L A++ DP++++G + P+ GR A I ++
Sbjct: 64 VEDGDERATQEPERYITLSEAKEIDPNVEVGDELRYPVEFEKLGRTAAMRLHNEIEFHIQ 123
Query: 124 EAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182
+ + ++K ++G IISGTV R E N V++ G++ + I E +PGD V
Sbjct: 124 RLMEQQLFEKYKQRIGTIISGTVTRVDEEENTYVEIDEVKGILPKRYRIKGEFFKPGDVV 183
Query: 183 KSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
K+ + V ++ G + LSRT P+F+ +L +EVPEI +G+V ++ V+R PG RAK+AV
Sbjct: 184 KAILKRVVFDKINGIYLELSRTTPKFLEELLKLEVPEIKDGLVTIEKVARIPGERAKVAV 243
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S IDPVGACVG+RG R+ AV ELR E ID + +SP FV +L PAI+T V +
Sbjct: 244 NSHSPKIDPVGACVGVRGVRINAVSKELRGENIDCIEYSPIPEIFVARSLSPAIITSVKI 303
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
+ + V +P +Q S AIG+ G N+RLAS LTG+ I++I E +
Sbjct: 304 --EGDKAIVTLPSDQKSKAIGKSGINIRLASMLTGYEIELIETEGSA 348
>gi|110005298|emb|CAK99622.1| putative transcription termination factor protein [Spiroplasma
citri]
Length = 471
Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats.
Identities = 122/405 (30%), Positives = 223/405 (55%), Gaps = 1/405 (0%)
Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64
+ +LL + + EK I RD++L + + I+KA + + + V+I+ +TG I + +
Sbjct: 3 DGTKLLTTINEIVSEKQISRDLILDSIKEGIKKAYEKHFDPEATVFVDIDQKTGQIKVEK 62
Query: 65 LLEVVEEVENYTCQISLKVARDRDPS-IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
L VV++VE+ +I L A+++ I I V +P+ +F R+A+ Q+I Q+++
Sbjct: 63 ELTVVKKVEDDLLEIGLNEAKEKYGEQITIDDKVYEPVNSEEFSRLAIFQVGQIIKQQIK 122
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183
EAE+D + E+ + G +++G V E ++V++ + I R I ++ G +
Sbjct: 123 EAEKDSIFDEYIIQKGHLMTGVVIAAEEKYLLVEVERTFAYIPRKNLIFSDHFEVGQPIT 182
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
DV + + Q+ SRT F+ +L E+PEI+ +++VKA++RDPG R+K+AV+S
Sbjct: 183 FLAEDVIKSKNAGQITGSRTSNDFLYRLLEREIPEIFEQVIEVKAIARDPGRRSKIAVYS 242
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
++ +IDP+GACVG +GSR+ V EL+DEKIDI +++ +S F+IN+L P V + ++
Sbjct: 243 TNENIDPIGACVGSKGSRINKVTAELQDEKIDICIYNDNSQQFIINSLSPVKVISITTND 302
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
+ +VIVP EQLSLAIG+ G +L ++LT W ++I++ E + +
Sbjct: 303 EGKEADVIVPDEQLSLAIGKGGSAAKLVAKLTKWKLNIMSYSEALTKQVEILWNGNLTTD 362
Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408
+ + + + + + + + E +E+ A E
Sbjct: 363 ELSTLQVKLKDKIKPKTTVETNTVDGAVDLPVEEFEIIEEQMAEE 407
>gi|76496362|gb|ABA43692.1| NusA [Spiroplasma kunkelii CR2-3x]
Length = 483
Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats.
Identities = 128/433 (29%), Positives = 230/433 (53%), Gaps = 2/433 (0%)
Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64
+ +LL D + EK I RD++L + + I+KA + + I VEI+ +TG I + +
Sbjct: 15 DGAKLLSTIDEIVSEKQISRDLILDSIKEGIRKAYEKHFDPEATIIVEIHQKTGQIKVEK 74
Query: 65 LLEVVEEVENYTCQISLKVARDRDPS-IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
L VV++VE+ +I L A+++ I I V + + +F R+A+ Q+I Q+++
Sbjct: 75 ELTVVKKVEDDLLEIGLNEAKEKYGEQITIDDKVYEQVNSEEFSRLAIFQVGQIIKQQIK 134
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183
EAE+D + E+ + G +++G V E ++V++ + I R I E+ G +
Sbjct: 135 EAEKDSIFDEYIIQKGHLMTGVVIAAEEKYLLVEVERTFAYIPRKNLIFSEHFEVGQPIT 194
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
DV + + Q++ SRT F+ L E+PEI+ +++VKA++RDPG R+K+AV+S
Sbjct: 195 FLAEDVVKSKNAGQIIGSRTSNDFLYSLLEREIPEIFEQVIEVKAIARDPGRRSKIAVYS 254
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
++ +IDP+GACVG +GSR+ V EL+DEKIDI +++ +S F+IN+L P V + ++
Sbjct: 255 TNENIDPIGACVGSKGSRINKVTAELQDEKIDICIYNDNSQQFIINSLSPVKVISITTND 314
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
+ +V+VP EQLSLAIG+ G + +L ++LT W ++I++ E + +
Sbjct: 315 EEKEADVVVPDEQLSLAIGKGGSSAKLVAKLTKWKLNIMSYSEALTKQVEILWNGNLTTD 374
Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE-IQGRAREYLEGIDI 422
+ + + + + + + + E +E+ A E + Y
Sbjct: 375 ELSALKVKLKDKIKPKAIVETNTVDITAGLPVEEFEIIEEQMAEETMILDEENYHVDDLT 434
Query: 423 TLQKKIRELGVSE 435
K+ E + E
Sbjct: 435 ESTPKVLENEIQE 447
>gi|50842972|ref|YP_056199.1| transcription elongation factor NusA [Propionibacterium acnes
KPA171202]
gi|289426473|ref|ZP_06428216.1| transcription termination factor NusA [Propionibacterium acnes
SK187]
gi|289428703|ref|ZP_06430386.1| transcription termination factor NusA [Propionibacterium acnes
J165]
gi|295131043|ref|YP_003581706.1| transcription termination factor NusA [Propionibacterium acnes
SK137]
gi|50840574|gb|AAT83241.1| transcriptional termination/antitermination factor
[Propionibacterium acnes KPA171202]
gi|289153201|gb|EFD01919.1| transcription termination factor NusA [Propionibacterium acnes
SK187]
gi|289158101|gb|EFD06321.1| transcription termination factor NusA [Propionibacterium acnes
J165]
gi|291377248|gb|ADE01103.1| transcription termination factor NusA [Propionibacterium acnes
SK137]
gi|313763591|gb|EFS34955.1| transcription termination factor NusA [Propionibacterium acnes
HL013PA1]
gi|313773529|gb|EFS39495.1| transcription termination factor NusA [Propionibacterium acnes
HL074PA1]
gi|313793985|gb|EFS42009.1| transcription termination factor NusA [Propionibacterium acnes
HL110PA1]
gi|313801372|gb|EFS42623.1| transcription termination factor NusA [Propionibacterium acnes
HL110PA2]
gi|313807949|gb|EFS46430.1| transcription termination factor NusA [Propionibacterium acnes
HL087PA2]
gi|313811582|gb|EFS49296.1| transcription termination factor NusA [Propionibacterium acnes
HL083PA1]
gi|313813358|gb|EFS51072.1| transcription termination factor NusA [Propionibacterium acnes
HL025PA1]
gi|313816771|gb|EFS54485.1| transcription termination factor NusA [Propionibacterium acnes
HL059PA1]
gi|313819518|gb|EFS57232.1| transcription termination factor NusA [Propionibacterium acnes
HL046PA2]
gi|313822158|gb|EFS59872.1| transcription termination factor NusA [Propionibacterium acnes
HL036PA1]
gi|313823608|gb|EFS61322.1| transcription termination factor NusA [Propionibacterium acnes
HL036PA2]
gi|313825931|gb|EFS63645.1| transcription termination factor NusA [Propionibacterium acnes
HL063PA1]
gi|313829611|gb|EFS67325.1| transcription termination factor NusA [Propionibacterium acnes
HL063PA2]
gi|313831322|gb|EFS69036.1| transcription termination factor NusA [Propionibacterium acnes
HL007PA1]
gi|313834932|gb|EFS72646.1| transcription termination factor NusA [Propionibacterium acnes
HL056PA1]
gi|313839907|gb|EFS77621.1| transcription termination factor NusA [Propionibacterium acnes
HL086PA1]
gi|314914745|gb|EFS78576.1| transcription termination factor NusA [Propionibacterium acnes
HL005PA4]
gi|314919293|gb|EFS83124.1| transcription termination factor NusA [Propionibacterium acnes
HL050PA1]
gi|314920797|gb|EFS84628.1| transcription termination factor NusA [Propionibacterium acnes
HL050PA3]
gi|314924649|gb|EFS88480.1| transcription termination factor NusA [Propionibacterium acnes
HL036PA3]
gi|314930476|gb|EFS94307.1| transcription termination factor NusA [Propionibacterium acnes
HL067PA1]
gi|314954366|gb|EFS98772.1| transcription termination factor NusA [Propionibacterium acnes
HL027PA1]
gi|314957448|gb|EFT01551.1| transcription termination factor NusA [Propionibacterium acnes
HL002PA1]
gi|314962084|gb|EFT06185.1| transcription termination factor NusA [Propionibacterium acnes
HL002PA2]
gi|314963663|gb|EFT07763.1| transcription termination factor NusA [Propionibacterium acnes
HL082PA1]
gi|314968509|gb|EFT12607.1| transcription termination factor NusA [Propionibacterium acnes
HL037PA1]
gi|314974197|gb|EFT18293.1| transcription termination factor NusA [Propionibacterium acnes
HL053PA1]
gi|314976694|gb|EFT20789.1| transcription termination factor NusA [Propionibacterium acnes
HL045PA1]
gi|314984332|gb|EFT28424.1| transcription termination factor NusA [Propionibacterium acnes
HL005PA1]
gi|314986521|gb|EFT30613.1| transcription termination factor NusA [Propionibacterium acnes
HL005PA2]
gi|314990880|gb|EFT34971.1| transcription termination factor NusA [Propionibacterium acnes
HL005PA3]
gi|315079513|gb|EFT51506.1| transcription termination factor NusA [Propionibacterium acnes
HL053PA2]
gi|315081257|gb|EFT53233.1| transcription termination factor NusA [Propionibacterium acnes
HL078PA1]
gi|315083455|gb|EFT55431.1| transcription termination factor NusA [Propionibacterium acnes
HL027PA2]
gi|315087141|gb|EFT59117.1| transcription termination factor NusA [Propionibacterium acnes
HL002PA3]
gi|315095336|gb|EFT67312.1| transcription termination factor NusA [Propionibacterium acnes
HL038PA1]
gi|315099219|gb|EFT71195.1| transcription termination factor NusA [Propionibacterium acnes
HL059PA2]
gi|315100430|gb|EFT72406.1| transcription termination factor NusA [Propionibacterium acnes
HL046PA1]
gi|315106776|gb|EFT78752.1| transcription termination factor NusA [Propionibacterium acnes
HL030PA1]
gi|315109017|gb|EFT80993.1| transcription termination factor NusA [Propionibacterium acnes
HL030PA2]
gi|327328401|gb|EGE70163.1| transcription termination factor NusA [Propionibacterium acnes
HL096PA2]
gi|327329733|gb|EGE71489.1| transcription termination factor NusA [Propionibacterium acnes
HL096PA3]
gi|327444188|gb|EGE90842.1| transcription termination factor NusA [Propionibacterium acnes
HL043PA2]
gi|327444933|gb|EGE91587.1| transcription termination factor NusA [Propionibacterium acnes
HL043PA1]
gi|327446418|gb|EGE93072.1| transcription termination factor NusA [Propionibacterium acnes
HL013PA2]
gi|327451993|gb|EGE98647.1| transcription termination factor NusA [Propionibacterium acnes
HL092PA1]
gi|327454970|gb|EGF01625.1| transcription termination factor NusA [Propionibacterium acnes
HL087PA3]
gi|327457744|gb|EGF04399.1| transcription termination factor NusA [Propionibacterium acnes
HL083PA2]
gi|328752173|gb|EGF65789.1| transcription termination factor NusA [Propionibacterium acnes
HL020PA1]
gi|328755195|gb|EGF68811.1| transcription termination factor NusA [Propionibacterium acnes
HL087PA1]
gi|328758325|gb|EGF71941.1| transcription termination factor NusA [Propionibacterium acnes
HL025PA2]
gi|328760059|gb|EGF73639.1| transcription termination factor NusA [Propionibacterium acnes
HL099PA1]
gi|332675923|gb|AEE72739.1| transcription elongation protein NusA [Propionibacterium acnes 266]
Length = 323
Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats.
Identities = 130/340 (38%), Positives = 198/340 (58%), Gaps = 25/340 (7%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
L + +K I D +L+ + D++ A ++ +V+++ +TG++++
Sbjct: 5 LSTLRMIERDKDIPLDYLLTTLEDALLNAYDKTEAPVNGAKVQLDRKTGNVAVML----- 59
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
++D + G P DFGRVA +A+QVI Q++REAE ++
Sbjct: 60 ---------------PEKDEEGQVVGWYD--GTPEDFGRVAASTARQVIFQRLREAEDEQ 102
Query: 130 QYLEFKDKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+Y F G++I+G V++ + V VDLG+ +G++ E + E G R++ Y+
Sbjct: 103 KYGHFSAVEGDVITGVVQQSYRDTRTVRVDLGSLEGIMPPAEQVPGEKYSHGRRIRVYVV 162
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
VR+E RGPQV++SRTHP + KLF MEVPEI G+V++KA++R+ G R+K+AV S +
Sbjct: 163 AVRKEARGPQVIVSRTHPNLVRKLFAMEVPEIEQGVVEIKALAREAGHRSKIAVVSHNPD 222
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVG 306
+ GAC+G G RV+AV+ EL +EKIDI+ WS D A FV AL P+ V+ V +D
Sbjct: 223 VSAKGACIGPMGQRVRAVMHELDEEKIDIIDWSEDPAEFVGAALSPSKVSSVTVIDPKAK 282
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346
IVP QLSLAIGR GQN RLA++LTGW IDI + +
Sbjct: 283 TARAIVPDYQLSLAIGREGQNARLAARLTGWRIDIRPDNK 322
>gi|327398877|ref|YP_004339746.1| NusA antitermination factor [Hippea maritima DSM 10411]
gi|327181506|gb|AEA33687.1| NusA antitermination factor [Hippea maritima DSM 10411]
Length = 360
Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats.
Identities = 132/344 (38%), Positives = 210/344 (61%), Gaps = 6/344 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+LQIA ++ E ID + V+ +A++++ A + YG +D+R+E + + +F +
Sbjct: 3 EILQIAKKISEEHEIDLERVVEYLAEALKIAIQKKYGDEADVRIETDVDN---EIFDVYV 59
Query: 68 VVEEVENY--TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+ VE QISL+ A+ P +G V + + GR+AV + K VI + +R+
Sbjct: 60 KKKVVEKPMLDSQISLEEAKAIKPDAKVGDYVEEKVDAKSLGRIAVTTIKNVITKLLRDI 119
Query: 126 ERDRQYLEFKDKVGEIISGTV-KRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
E+ + Y E+K+ +G+II G V NVIVD N+ GV+ + E + G+ +K+
Sbjct: 120 EKHKAYEEYKEYIGKIIVGEVWSIGSNNNVIVDFKNAIGVLPKREQGINDKYVVGEHIKA 179
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
Y+ DV E + +++LSRTHP F+ +LF EVPE+ G V++KAV+R+P R K+AV+S
Sbjct: 180 YVLDVLEEAKQVRLILSRTHPGFVKELFKKEVPEVREGSVEIKAVAREPSRRTKVAVYSK 239
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
DS IDP+G CVG +G R+ A+V EL DEKID++ WS D + ++ NA+ PA V V +DED
Sbjct: 240 DSRIDPIGTCVGSKGVRIAAIVRELGDEKIDVIKWSADPSIYIRNAMSPAKVISVEIDED 299
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
+ + +V V + S+AIG+ G N +LA++LTG+ IDI +
Sbjct: 300 LKKAKVYVDDAEYSMAIGKGGVNAKLAAKLTGYNIDIAKISDKE 343
>gi|298694558|gb|ADI97780.1| N utilization substance protein A, putative [Staphylococcus aureus
subsp. aureus ED133]
Length = 340
Score = 273 bits (697), Expect = 6e-71, Method: Composition-based stats.
Identities = 137/338 (40%), Positives = 207/338 (61%), Gaps = 1/338 (0%)
Query: 56 ETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAK 115
+ G + +VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AK
Sbjct: 2 DQGTFKVIARKDVVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAK 61
Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISREN 175
Q ++Q++R+AER+ + EF DK +I++G + RV++ V V+LG + V+ E E
Sbjct: 62 QAVMQRLRDAEREILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEAVLSEAERSPNEK 121
Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235
P +R+K Y+ V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G
Sbjct: 122 YIPNERIKVYVNKVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGD 181
Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295
R+K++VFS ++ ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+
Sbjct: 182 RSKISVFSENNDIDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQ 241
Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355
V +V++DE V+VP QLSLAIG+RGQN RLA++LTGW IDI +E +
Sbjct: 242 VLEVIVDETNQSTVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPV 301
Query: 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKIS 393
E + + + +++ E DV V+
Sbjct: 302 VEAEKVTEEDVALEDADTTE-STEEVTDVSVETNVEKE 338
>gi|283769341|ref|ZP_06342240.1| transcription termination factor NusA [Bulleidia extructa W1219]
gi|283103998|gb|EFC05382.1| transcription termination factor NusA [Bulleidia extructa W1219]
Length = 569
Score = 273 bits (697), Expect = 8e-71, Method: Composition-based stats.
Identities = 137/400 (34%), Positives = 215/400 (53%), Gaps = 2/400 (0%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLLEV 68
L V E+SI + V+L + +++ KA + D+ EIN + I LF+ V
Sbjct: 9 LAALTDVEEERSIPQSVILEALKEAMAKAYKKNEELPDIDVVAEINEKKKSIDLFQNYVV 68
Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
V EVE+ ++SL+ AR D + +G V P+ R A AK V+ QK+REAE++
Sbjct: 69 VTEVEDDELEMSLEQARQLDKNAQVGDTVRRPVEIESMTRAAAMLAKNVMRQKIREAEKE 128
Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
Y E+ ++ E++ GT++ ++ +V+LG + ++ E I E LR R+K I +
Sbjct: 129 AVYNEYIGQLNEMVFGTIESIKDKFTLVNLGKTTALMLSGEQIPNERLRENQRIKVVITE 188
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V +E +G QVL+SR + +LF EVPEI+ G+V++KA++R+ G R K+AV S +
Sbjct: 189 VNKEGKGAQVLVSRGTAMLVRRLFEAEVPEIFQGVVEIKAIAREAGERTKMAVLSHHPEV 248
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308
DP+GAC+G RGSRVQ ++ EL+ EK+DI WS D + V NAL PA + V+ +ED G +
Sbjct: 249 DPIGACIGPRGSRVQEIIKELKGEKVDIFEWSEDITSLVQNALSPAEIETVIPNED-GSL 307
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368
VIV ++QLSLAIG+RG+N RLA +LT IDI T E + + +
Sbjct: 308 MVIVAEDQLSLAIGKRGKNARLAVKLTNRKIDIKTRAELEEAGVDYEALMEKAKERKEKL 367
Query: 369 DEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408
+ ++ + + + E +
Sbjct: 368 QIEAQERARKAALEAAKLAESKRLETLEKLRAENSEELEQ 407
>gi|169334799|ref|ZP_02861992.1| hypothetical protein ANASTE_01205 [Anaerofustis stercorihominis DSM
17244]
gi|169257537|gb|EDS71503.1| hypothetical protein ANASTE_01205 [Anaerofustis stercorihominis DSM
17244]
Length = 394
Score = 272 bits (696), Expect = 8e-71, Method: Composition-based stats.
Identities = 138/364 (37%), Positives = 216/364 (59%), Gaps = 21/364 (5%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
+ ++ D + K ID++ ++ + ++ A + T D+ V IN +G I F +
Sbjct: 15 DFIEALDEINKTKGIDKEEIIVAVEQALVAAYKKDTRTNVDLVVNINRVSGAIDAFYSKQ 74
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
+VEEVE+ +ISL A D S +G + + P FGR+A Q+AKQ+IIQK++E+ER
Sbjct: 75 IVEEVEDEDREISLHEALVLDKSAVLGASMVTHIDPKGFGRIATQNAKQLIIQKLKESER 134
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGN----------------VIVDLGNSDGVIRRDETI 171
+ F K E+++G ++R EY + +DLG ++G++ +
Sbjct: 135 NIISNTFMKKKDEMVTGVIQREEYKEMRKMVHGEPIKEQNRIIHIDLGKAEGIMNSQNQV 194
Query: 172 SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSR 231
E+ PG R+K Y+ DV +GPQ++LSRTHP + +LF EV EI +GIV++K++SR
Sbjct: 195 RSEHYHPGMRLKVYVSDVILTPKGPQIILSRTHPGLIRRLFEEEVAEISDGIVEIKSISR 254
Query: 232 DPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINAL 291
+ GSR+K+AV+++D IDPVG C+G +G R+Q V+ E+ DEKIDI+ +S D ++ NAL
Sbjct: 255 EAGSRSKMAVYTADDQIDPVGTCIGPKGFRIQNVLNEIGDEKIDIIKYSEDPVEYIKNAL 314
Query: 292 RPAIVTKVVL-----DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346
PA V +V + ++ V+V QLSLAIG+ GQNVRLA++LTGW IDI ++
Sbjct: 315 APADVLRVDILQTEEEDGKNSAAVVVDDSQLSLAIGKDGQNVRLAARLTGWKIDIKSKSS 374
Query: 347 DSIN 350
Sbjct: 375 VQEE 378
>gi|293192171|ref|ZP_06609383.1| transcription termination factor NusA [Actinomyces odontolyticus
F0309]
gi|292820367|gb|EFF79359.1| transcription termination factor NusA [Actinomyces odontolyticus
F0309]
Length = 342
Score = 272 bits (696), Expect = 9e-71, Method: Composition-based stats.
Identities = 125/363 (34%), Positives = 204/363 (56%), Gaps = 26/363 (7%)
Query: 7 LEL-LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+E+ + V EK + + ++ + +++ KA +L G +S R+EI+ +TG +++
Sbjct: 1 MEIDMTALRMVENEKGVSLETLVDAIEEALLKAYHNLPGAISQARIEIDKKTGRVTV--- 57
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+++ D +P + P +FGR+A +A+ VI+Q++R+A
Sbjct: 58 -------------MAMDEDEDGNPIGEFDDT------PKNFGRIAQSTARSVIMQRLRDA 98
Query: 126 ERDRQYLEFKDKVGEIISGTVK--RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183
+ R + +F + G+II+GTV+ R ++ + + V+ E + E+ R GDR++
Sbjct: 99 DDQRVFGDFAGREGQIITGTVQAPRPGRPTMVQVSDDFEAVLPDGEKVPGESYRHGDRIR 158
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+Y+ V R +RGP++ LSRTHP + LF EVPEI G+V++KA++R+ G R K+AV +
Sbjct: 159 AYVVGVERTERGPRITLSRTHPNLVAGLFQREVPEIQQGLVKIKAIAREAGHRTKIAVAA 218
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
+ I+ GAC+G G+RV++V+ EL EKIDIV +S D A FV N+L PA VT+VV+
Sbjct: 219 TREGINAKGACIGPMGARVRSVMAELGGEKIDIVDYSDDPARFVANSLSPARVTRVVVHS 278
Query: 304 -DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
D IVP QLSLAIG+ GQN RLA++LT + IDI + E +
Sbjct: 279 VDNRTATAIVPDFQLSLAIGKEGQNARLAARLTNYHIDIHADTETGDDAIASRVSTPDDV 338
Query: 363 MQA 365
Sbjct: 339 TSR 341
>gi|282854640|ref|ZP_06263975.1| transcription termination factor NusA [Propionibacterium acnes
J139]
gi|282582222|gb|EFB87604.1| transcription termination factor NusA [Propionibacterium acnes
J139]
gi|314981920|gb|EFT26013.1| transcription termination factor NusA [Propionibacterium acnes
HL110PA3]
gi|315090735|gb|EFT62711.1| transcription termination factor NusA [Propionibacterium acnes
HL110PA4]
Length = 323
Score = 272 bits (696), Expect = 9e-71, Method: Composition-based stats.
Identities = 130/340 (38%), Positives = 198/340 (58%), Gaps = 25/340 (7%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
L + +K I D +L+ + D++ A ++ +V+++ +TG++++
Sbjct: 5 LSTLRMIERDKDIPLDYLLTTLEDALLNAYDKTEAPVNGAKVQLDRKTGNVAVML----- 59
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
++D + G P DFGRVA +A+QVI Q++REAE ++
Sbjct: 60 ---------------PEKDEEGQVVGWYD--GTPEDFGRVAASTARQVIFQRLREAEDEQ 102
Query: 130 QYLEFKDKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+Y F G++I+G V++ + V VDLG+ +G++ E + E G R++ Y+
Sbjct: 103 KYGHFSAVEGDVITGVVQQSYRDTRTVRVDLGSLEGIMPPAEQVPGEKYSHGRRIRVYVV 162
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
VR+E RGPQV++SRTHP + KLF MEVPEI G+V++KA++R+ G R+K+AV S +
Sbjct: 163 AVRKEARGPQVIVSRTHPNLVRKLFAMEVPEIEQGVVEIKALAREAGHRSKIAVVSHNPD 222
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVG 306
+ GAC+G G RV+AV+ EL +EKIDI+ WS D A FV AL P+ V+ V +D
Sbjct: 223 VSAKGACIGPMGQRVRAVMHELDEEKIDIIDWSGDPAEFVGAALSPSKVSSVTVIDPKAK 282
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346
IVP QLSLAIGR GQN RLA++LTGW IDI + +
Sbjct: 283 TARAIVPDYQLSLAIGREGQNARLAARLTGWRIDIRPDNK 322
>gi|224531576|ref|ZP_03672208.1| transcription elongation protein NusA [Borrelia valaisiana VS116]
gi|224511041|gb|EEF81447.1| transcription elongation protein NusA [Borrelia valaisiana VS116]
Length = 482
Score = 272 bits (696), Expect = 9e-71, Method: Composition-based stats.
Identities = 122/396 (30%), Positives = 232/396 (58%), Gaps = 7/396 (1%)
Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74
++A ++S+ D + + +S+ A + +G+ + V+ + +TGD+ ++ ++VEEV++
Sbjct: 11 SIANDRSMSIDSIRKTIKESVLIAYKKYFGSNENAFVKFDDDTGDLIVYAKKKIVEEVKD 70
Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134
++ K + G + P F R+++Q AKQ ++ E + EF
Sbjct: 71 SFLEVLEKDISKEN--FVEDGYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEILSEF 128
Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194
K K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ +
Sbjct: 129 KSKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYNLNDKIRVLVYNVKKGKN 188
Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254
G +V+LSRTHP+F+ +L +E+PEI G++++ + RDPG R K+AV+S IDPVG C
Sbjct: 189 GIEVILSRTHPKFIEELLALEIPEIEEGVIKIHKIVRDPGYRIKVAVYSEKEEIDPVGPC 248
Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVP 313
+G +G R+Q+++ EL EKIDI+ +S D F+ ++L P+ + V + DED+ + V+V
Sbjct: 249 IGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPSKIEHVYILDEDLHKALVVVS 308
Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIA 373
+QLSLAIG+ GQNVRLA++L W ID+ T + + + ++ M D+++
Sbjct: 309 DDQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFAKMKANSEFKQETLEM----FDKVMQ 364
Query: 374 HLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409
++ E F ++ +++ +K+ + + I +E +I
Sbjct: 365 DVVEEEQFEEISKISDLKLLDPSVISNLSKEGLNDI 400
>gi|228473549|ref|ZP_04058301.1| transcription termination factor NusA [Capnocytophaga gingivalis
ATCC 33624]
gi|228274921|gb|EEK13731.1| transcription termination factor NusA [Capnocytophaga gingivalis
ATCC 33624]
Length = 411
Score = 272 bits (696), Expect = 9e-71, Method: Composition-based stats.
Identities = 128/418 (30%), Positives = 230/418 (55%), Gaps = 12/418 (2%)
Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64
N L+L++ +K IDR+ ++S++ + + A + YG+ + + INP+ GDI ++R
Sbjct: 3 NNLDLIESFSEFRDDKLIDREALMSILDEVFKTALKKKYGSDENFDIIINPDKGDIEIWR 62
Query: 65 LLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+V++ VEN +I L A + ++G VS+ + GR A+ + +Q +I KV
Sbjct: 63 NRIIVDDGMVENPNAEIPLSEALKIESDFEVGEEVSEEVKISQLGRRAILALRQNLISKV 122
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDR 181
E + + Y +FK+ +G I + + ++ VI+ D ++ ++ RD+ I + + G+
Sbjct: 123 HEYDNNTVYKKFKELIGTIYTAEIHHIKGKTVILLDDEGNEILLPRDKQIPSDFFKKGET 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
K I V + P ++LSRT P F+ +LF E+PEI +G++ ++ V+R PG +AK+AV
Sbjct: 183 TKGIIESVDFKGNKPSIILSRTSPVFLERLFEQEIPEIADGLITIQKVARIPGEKAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
+ D IDPVGACVG+ G+R++++V EL +E ID++ +S ++ F+ AL PA +T + +
Sbjct: 243 DTYDDRIDPVGACVGVNGARIRSIVRELGNENIDVISYSSNTNLFISKALAPAKITSITV 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
+E+ R EV++ E++S AIG+ G N+RLAS LTG+ ID+ E + +F +
Sbjct: 303 NEETKRAEVLLASEEVSKAIGKGGSNIRLASLLTGYEIDVFREGAEEDVELSEFED---- 358
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
+++ + G + + E+ + ET E+ RE E
Sbjct: 359 -----DIEPWVIEEFRRIGLDTAKSVLEYSAEELEKRIDLERETIEEVLRVLREEFEN 411
>gi|317508529|ref|ZP_07966195.1| transcription termination factor NusA [Segniliparus rugosus ATCC
BAA-974]
gi|316253173|gb|EFV12577.1| transcription termination factor NusA [Segniliparus rugosus ATCC
BAA-974]
Length = 342
Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats.
Identities = 135/356 (37%), Positives = 203/356 (57%), Gaps = 31/356 (8%)
Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70
Q A+ EK + + ++ +A ++ A + G +D RV+I+ + G + + V E
Sbjct: 6 QTLRAIEAEKGLSSEKIIDAIASALLTAYKHTDGHHADARVDIDRKHGAVKV----LVAE 61
Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130
E+ +G P DFGR+A +A+QVI+Q++R+AE D+
Sbjct: 62 RDEDGNI---------------LGEY---DDTPADFGRIATMTARQVILQRLRDAEGDQG 103
Query: 131 YLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDRV 182
+ + K GEI++G V+R N IV LG+ +GV+ E + E+L GDRV
Sbjct: 104 FADLPVKEGEIVAGVVQRDARANERGLQIVKLGSELKSYEGVLPVAEQVPGESLVHGDRV 163
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
K Y+ V+ +RGPQ+ LSRTHP + KLF +EVPEI G VQ+ AV+R+ G R+K+AV
Sbjct: 164 KCYVVSVKAGRRGPQITLSRTHPNLVRKLFALEVPEIGEGSVQIVAVAREAGHRSKIAVK 223
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL- 301
S+ ++ GAC+G G RV+ V++EL EKID++ + D ATFV NAL PA +
Sbjct: 224 STVPGLNAKGACIGQNGQRVRNVMSELAGEKIDLIDFDEDPATFVGNALSPARALATRVL 283
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
D + V+VP QLSLAIG+ GQN RLA++LTGW IDI +E++ + R+ +
Sbjct: 284 DPVAKAVRVVVPDSQLSLAIGKEGQNARLAARLTGWRIDIRSEQDPEVARRAAADH 339
>gi|323342029|ref|ZP_08082262.1| transcription elongation factor NusA [Erysipelothrix rhusiopathiae
ATCC 19414]
gi|322464454|gb|EFY09647.1| transcription elongation factor NusA [Erysipelothrix rhusiopathiae
ATCC 19414]
Length = 536
Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats.
Identities = 158/492 (32%), Positives = 248/492 (50%), Gaps = 8/492 (1%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLLE 67
++ + ++I +++++ + DS+ KA R G + + V I+ T ++ LF
Sbjct: 6 VILAMQEIEDNRNISKEIIIDALQDSLIKAYRKQIGVPDALVDVIIDERTQEMKLFHKFL 65
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + ++ + + + +G P ++ GR A AK VI QK+REAE+
Sbjct: 66 VVEEVMDDELEVGITELPEGAEGLQVGEYYMIEEPIVELGRAAATLAKNVIKQKIREAEK 125
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y E+ D++GE+I V+ VE V+++LG S V+ R I E R G +K I
Sbjct: 126 QAVYDEYIDQLGEMIMAMVESVEEKFVVLNLGKSLAVMPRAAQIEGETYREGQTLKVVIT 185
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
DV R+ +G Q+L+SR + +LF EVPEI+ G V++KA++R+ G R K+AV+S DS
Sbjct: 186 DVNRDTKGAQILVSRADAMLVRRLFENEVPEIFEGQVEIKAIAREAGERTKIAVYSHDSD 245
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
IDP+GAC+G RGSRVQA++ EL+ EKIDI WS + + NAL PA V V + D
Sbjct: 246 IDPIGACIGPRGSRVQAIIEELKGEKIDIFEWSDNMVELINNALAPAEVIAVYPNADNKG 305
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI--ITEEEDSINRQKDFNERTQFFMQA 365
+ VIV QLSLAIG+RG+N RLA +LT IDI ++E E + +++
Sbjct: 306 LVVIVDDNQLSLAIGKRGKNARLAVRLTKQRIDIKSVSEAEADGIDYVSLMAAYEAEIRS 365
Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425
V E + LV E A V EI +E + A I +E + +
Sbjct: 366 KQVQEEVNEELV----VRTEVEATVDAEEIVEVEE-TADLAESIIEEVQEVEQTEVTDVV 420
Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485
+ + +EE +D K + + E LA S + + + D
Sbjct: 421 SEEIIIEETEESEEAIKLDRKDVFKPRTDYVSKFEQLADASRKEEQDLRRRRRKPEREED 480
Query: 486 GFLSSLGTPKDQ 497
+++ K++
Sbjct: 481 KPVNTSELLKEK 492
>gi|295098916|emb|CBK88005.1| transcription termination factor NusA [Eubacterium cylindroides
T2-87]
Length = 545
Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats.
Identities = 144/448 (32%), Positives = 240/448 (53%), Gaps = 23/448 (5%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLLE 67
L + + ++ + ++V + +++ KA R + + V I E G I ++ +
Sbjct: 8 LQKALQGIENDRQLSSEIVEDALREALTKAYRKHIEIPDAYVEVVI--EDGIIHIYHQRK 65
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVE+VE+ +ISL+ AR + +I + V++ + F R AV AK V+ QK+REAE+
Sbjct: 66 VVEDVEDDELEISLEDARKVNKNIQLDDFVNEEVDFTTFDRAAVVLAKNVMKQKIREAEK 125
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y E+ DK+ E++ G V+ VE VIV++G + ++++ + I E G ++ I
Sbjct: 126 AQVYEEYCDKLDEMVLGVVETVEEKFVIVNIGKTLAMLKKSQQIPTEKYYEGQKLLVVIT 185
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
+V +E +G QVL+SR P F+ +LF EVPEIYNGI+++KA++RDPG R K+AV+S + +
Sbjct: 186 EVNKETKGAQVLVSRATPVFVRRLFEREVPEIYNGIIEIKAIARDPGERCKIAVYSHNEN 245
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
IDP+GAC+G RGSRVQ ++ EL EKIDI WS + + + NAL P+ V+ +E+V
Sbjct: 246 IDPIGACIGPRGSRVQTIINELNGEKIDIFEWSDNISELIENALSPSEAVAVIPNENVKD 305
Query: 308 -IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE--------- 357
+ V+VP QLSLAIG+RG+N RLA +L+ IDI +E E
Sbjct: 306 GLIVVVPDSQLSLAIGKRGKNARLAVKLSNRKIDIKSESEMQELGIDYMTIAKELQEEYE 365
Query: 358 ---------RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIAS-IEGFDEETAV 407
+ Q ++ + EI + F +++ E+ I
Sbjct: 366 AKKAKERAYKQQQKIEELKHSEIEIENVDVADFDYDDDIDTTTYEEVEGPIHQNTTTLFE 425
Query: 408 EIQGRAREYLEGIDITLQKKIRELGVSE 435
+ + + +E ++K +E ++
Sbjct: 426 KERETELDEMEEAARIAKEKRKEKTAAD 453
>gi|327334250|gb|EGE75964.1| transcription termination factor NusA [Propionibacterium acnes
HL097PA1]
Length = 323
Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats.
Identities = 129/340 (37%), Positives = 197/340 (57%), Gaps = 25/340 (7%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
L + +K I D +L+ + D++ A ++ +V+++ +TG++++
Sbjct: 5 LSTLRMIERDKDIPLDYLLTTLEDALLNAYDKTEAPVNGAKVQLDRKTGNVAVML----- 59
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
++D + G P DFGRVA +A+QVI Q++REAE ++
Sbjct: 60 ---------------PEKDEEGQVVGWYD--GTPEDFGRVAASTARQVIFQRLREAEDEQ 102
Query: 130 QYLEFKDKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+Y F G++I+G V++ + V VDLG+ +G++ E + E G R++ Y+
Sbjct: 103 KYGHFSAVEGDVITGVVQQSYRDTRTVRVDLGSLEGIMPPAEQVPGEKYSHGRRIRVYVV 162
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
VR+E RGPQV++SRTHP + KLF MEVPEI G+V++KA++R+ G R+K+AV S +
Sbjct: 163 AVRKEARGPQVIVSRTHPNLVRKLFAMEVPEIEQGVVEIKALAREAGHRSKIAVVSHNPD 222
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVG 306
+ GAC+G G RV+AV+ EL +EKIDI+ WS D A FV AL P+ V+ V +D
Sbjct: 223 VSAKGACIGPMGQRVRAVMHELDEEKIDIIDWSEDPAEFVGAALSPSKVSSVTVIDPKAK 282
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346
IVP QLSL IGR GQN RLA++LTGW IDI + +
Sbjct: 283 TARAIVPDYQLSLGIGREGQNARLAARLTGWRIDIRPDNK 322
>gi|300774925|ref|ZP_07084788.1| transcription termination factor NusA [Chryseobacterium gleum ATCC
35910]
gi|300506740|gb|EFK37875.1| transcription termination factor NusA [Chryseobacterium gleum ATCC
35910]
Length = 411
Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats.
Identities = 121/419 (28%), Positives = 226/419 (53%), Gaps = 11/419 (2%)
Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
+ + L++ EK I + +++++ DS++ R + + V +NP+ GD +F
Sbjct: 1 MDNIALIESFGDFKDEKGISKIDLMAIIEDSLKTLLRKRFDSDDHFDVIVNPDKGDFQIF 60
Query: 64 RLLEVVEEV--ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
+VE+ E+ +I + A+ DP+ ++G + +P GR + + KQ++ K
Sbjct: 61 LNKTIVEDEMSEDDDLEIEISEAKKIDPTFEVGEDFTMEIPVAQLGRRNILTLKQILATK 120
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGD 180
++E Y +F+DK+GEI+ G + + + +VI +D ++ ++ ++ I + + G+
Sbjct: 121 LQEHNNAMLYEQFRDKIGEIVVGEIHHIRHKHVILLDDEGNEFILPKENQIPSDFFKKGE 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
+++ + V + PQ+++SRT P+F+ KL +E+PEI +G + +K V R PG +AK+A
Sbjct: 181 NIRAIVETVDFKGSKPQIIISRTAPKFLEKLLELEIPEIQDGTIILKKVVRIPGEKAKIA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V + D IDPVGACVG++GSR+ VV ELR+E ID++ WS + V AL + K+
Sbjct: 241 VDAYDDRIDPVGACVGVKGSRIHGVVRELRNENIDVIQWSKNPEILVKRALGNVTINKIE 300
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
++E+ V P E++S IG++GQN+RLAS LTG+ ID+ E + + +
Sbjct: 301 INEETNYALVYTPVEEISKVIGKQGQNIRLASWLTGYEIDVYRESSEDDDVELKEFND-- 358
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
++++ I G + + + + ++ +EET E++ RE E
Sbjct: 359 ------DIEQWILDEFKKVGLTTAKSVLDKETESLLNMVDLEEETIEEVKRILREEFED 411
>gi|119953577|ref|YP_945787.1| transcription elongation factor NusA [Borrelia turicatae 91E135]
gi|119862348|gb|AAX18116.1| N utilization substance protein A [Borrelia turicatae 91E135]
Length = 495
Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats.
Identities = 136/424 (32%), Positives = 243/424 (57%), Gaps = 15/424 (3%)
Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70
Q+ +A E+ + D + + +SI A + +GT + ++ + +TGD+ ++ ++VE
Sbjct: 21 QMIANIANERGMSIDAIRKTVRESIMIAYKKYFGTSENALIKFDEDTGDLIVYSKKKIVE 80
Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130
EV++ +I +++ + G + P F R+++Q AKQ ++ E +
Sbjct: 81 EVQDDILEILKDDSQEF--EVMEDGYAYIEIDPKIFDRLSIQVAKQRTKSDLQGIEDNEL 138
Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190
YLEFK K+ +I+ G V++ G++ V+LG++DGVI + RE D+V+ +Y V+
Sbjct: 139 YLEFKHKLHKIVIGYVQQNRNGDLYVNLGSTDGVIPKKYQSPREVYGLNDKVRVLVYSVK 198
Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250
+ + G +V+LSRTHP+F+ +L +E+PEI G++++ + RDPG R K+AV+S IDP
Sbjct: 199 KGKNGIEVVLSRTHPKFIEELLTLEIPEIEEGLIKIHKIVRDPGYRTKVAVYSEKEEIDP 258
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIE 309
VG C+G +G R+Q+++ EL EKIDI+ +S D F+ +AL PA + V + DED+ +
Sbjct: 259 VGPCIGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIRDALTPAKIDNVYIVDEDLHKAL 318
Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVD 369
V+V EQLSLAIG+ GQNVRLA++L W ID+ T + + + ++ F M D
Sbjct: 319 VVVSDEQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFAEMKASGEFKQETFEM----FD 374
Query: 370 EIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIR 429
+II + + F ++ +++ +KI D + ++ + ++ ++K+
Sbjct: 375 KIIQDNVQEDEFEEINKISELKI--------LDNDIVDKLVEAGFDDIDSFLDASEEKLF 426
Query: 430 ELGV 433
ELG+
Sbjct: 427 ELGI 430
>gi|314978822|gb|EFT22916.1| transcription termination factor NusA [Propionibacterium acnes
HL072PA2]
gi|315089313|gb|EFT61289.1| transcription termination factor NusA [Propionibacterium acnes
HL072PA1]
Length = 323
Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats.
Identities = 130/340 (38%), Positives = 197/340 (57%), Gaps = 25/340 (7%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
L + +K I D +L+ + D++ A ++ +V+++ +TG++++
Sbjct: 5 LSTLRMIERDKDIPLDYLLTTLEDALLNAYDKTEAPVNGAKVQLDRKTGNVAVML----- 59
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
++D + G P DFGRVA +A+QVI Q++REAE ++
Sbjct: 60 ---------------PEKDEEGQVVGWYD--GTPEDFGRVAASTARQVIFQRLREAEDEQ 102
Query: 130 QYLEFKDKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+Y F G++I+G V++ + V VDLG+ +G++ E + E G R++ Y+
Sbjct: 103 KYGHFSAVEGDVITGVVQQSYRDTRTVRVDLGSLEGIMPPAEQVPGEKYSHGRRIRVYVV 162
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
VR+E RGPQV++SRTHP + KLF MEVPEI G+V++KA+ R+ G R+K+AV S +
Sbjct: 163 AVRKEARGPQVIVSRTHPNLVRKLFAMEVPEIEQGVVEIKALVREAGHRSKIAVVSHNPD 222
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVG 306
+ GAC+G G RV+AV+ EL +EKIDI+ WS D A FV AL P+ V+ V +D
Sbjct: 223 VSAKGACIGPMGQRVRAVMHELDEEKIDIIDWSEDPAEFVGAALSPSKVSSVTVIDPKAK 282
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346
IVP QLSLAIGR GQN RLA++LTGW IDI + +
Sbjct: 283 TARAIVPDYQLSLAIGREGQNARLAARLTGWRIDIRPDNK 322
>gi|261338246|ref|ZP_05966130.1| transcription termination factor NusA [Bifidobacterium gallicum DSM
20093]
gi|270276899|gb|EFA22753.1| transcription termination factor NusA [Bifidobacterium gallicum DSM
20093]
Length = 381
Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats.
Identities = 120/334 (35%), Positives = 191/334 (57%), Gaps = 19/334 (5%)
Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV-VE- 70
+A E+ ID + V ++++++ A +RVE++ G +++ E+ VE
Sbjct: 8 IHQLAKEQGIDTETVDEALSEALRLAYLKTPNAAKHVRVELDERAGTFTIWARDEIRVEP 67
Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130
E+ I ++G D P DFGR+A +A+QVI Q R AE DR
Sbjct: 68 TEEDPHGHI------------ELGEEYDD--TPKDFGRLAAATARQVITQLFRRAEDDRI 113
Query: 131 YLEFKDKVGEIISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
+ F + G++++G +++ + NV V +G+ + ++ R E + E R GDR++ Y+ +
Sbjct: 114 FGAFSGQKGKLMTGVIQQDVKDPTNVHVAVGDVEAILPRREQVPGERYRHGDRIRVYVVN 173
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V R RGP++++SR+HP + KLF EVPE+ +G V + A++R+ G+R K+AV ++ +
Sbjct: 174 VNRGLRGPEIIVSRSHPDLVRKLFEREVPELVSGAVSIMAIAREAGARTKIAVRANTDGV 233
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED-VGR 307
+P GA +G GSRV+AV+ L +EKIDIV WS D A F+ AL PA V + D
Sbjct: 234 NPKGALIGPGGSRVRAVMENLGNEKIDIVDWSDDPAKFIGAALSPANAAGVDVISDKNNT 293
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
+ +QLSLAIG+ GQN RLA++LTGW I I
Sbjct: 294 AVAYIHDDQLSLAIGKEGQNARLAAKLTGWKIGI 327
>gi|184201252|ref|YP_001855459.1| transcription elongation protein NusA [Kocuria rhizophila DC2201]
gi|183581482|dbj|BAG29953.1| transcription elongation protein NusA [Kocuria rhizophila DC2201]
Length = 325
Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats.
Identities = 121/344 (35%), Positives = 193/344 (56%), Gaps = 26/344 (7%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ + E+ I DV++ + ++ A G + R E+ TG ++++
Sbjct: 5 MSTLRLLERERDIPVDVLIPTIEQALLLAYMRSPGAIDGARAEVERRTGHVTIW------ 58
Query: 70 EEVENYTCQISLKVARDRDP-SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
A + D IG P FGR+A +A+QVI+QK+R+ E D
Sbjct: 59 --------------APELDEQDQRIGEF---DDTPSGFGRIAAATARQVILQKLRDVEDD 101
Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
FK + GE++SG +++ ++ V+LG +G++ E + E R GDR+++++
Sbjct: 102 NVLGHFKGREGELVSGQIQQGNNPRMVQVNLGTVEGLLPPHEQVPGETYRHGDRIRAFVV 161
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
+ +R +GP + LSR+HP + +LF MEVPEI +G V++ ++R+ G R K+AV +
Sbjct: 162 EAKRGFKGPSITLSRSHPDLVRRLFEMEVPEIADGSVEIVTLAREAGHRTKMAVEARRPG 221
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVG 306
+ GAC+G GSRV+AV+ EL +EKIDI+ +S D A F+ NAL PA V++VV+ D+
Sbjct: 222 ANAKGACIGDMGSRVRAVMNELGEEKIDIIDFSQDPAEFIGNALSPARVSRVVVLDDAAR 281
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350
+VP QLSLAIG+ GQN RLA++LTGW IDI+ E +
Sbjct: 282 SARAVVPDSQLSLAIGKEGQNARLAARLTGWKIDIVPESRATDR 325
>gi|183601974|ref|ZP_02963343.1| transcription elongation factor NusA [Bifidobacterium animalis
subsp. lactis HN019]
gi|219682886|ref|YP_002469269.1| transcription elongation factor NusA [Bifidobacterium animalis
subsp. lactis AD011]
gi|241190463|ref|YP_002967857.1| transcription elongation factor NusA [Bifidobacterium animalis
subsp. lactis Bl-04]
gi|241195869|ref|YP_002969424.1| transcription elongation factor NusA [Bifidobacterium animalis
subsp. lactis DSM 10140]
gi|183218859|gb|EDT89501.1| transcription elongation factor NusA [Bifidobacterium animalis
subsp. lactis HN019]
gi|219620536|gb|ACL28693.1| N utilization substance-like protein [Bifidobacterium animalis
subsp. lactis AD011]
gi|240248855|gb|ACS45795.1| transcription elongation factor NusA [Bifidobacterium animalis
subsp. lactis Bl-04]
gi|240250423|gb|ACS47362.1| transcription elongation factor NusA [Bifidobacterium animalis
subsp. lactis DSM 10140]
gi|289178187|gb|ADC85433.1| N utilization substance protein A [Bifidobacterium animalis subsp.
lactis BB-12]
gi|295793450|gb|ADG32985.1| transcription elongation factor NusA [Bifidobacterium animalis
subsp. lactis V9]
Length = 358
Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats.
Identities = 120/332 (36%), Positives = 196/332 (59%), Gaps = 15/332 (4%)
Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV 72
A+A E+ ID + V + ++++++ A + RVE++P G +++ E+ +E
Sbjct: 8 IHALAQEQGIDAETVDAALSEALRLAYLKMPHAAKYARVELDPRAGSFTIWARDEIPQEP 67
Query: 73 ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYL 132
P+ ++G D P DFGR+A +A+QVI Q R+AE DR +
Sbjct: 68 TEDNPH----------PAPELGEEYDD--TPHDFGRLAASTARQVIQQLFRKAEDDRVFG 115
Query: 133 EFKDKVGEIISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190
F + G++I+G V++ + NV V +G+ + ++ R E + E R G+R++ Y+ V
Sbjct: 116 AFSGQRGKLITGVVQQDVKDPANVHVAVGDVEALLPRREQVPGERYRHGERIRVYVTTVA 175
Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250
R +GP++++SR+HP+ + +LF EVPE+ +G V + A++R+ G+R K+AV ++ I+P
Sbjct: 176 RGLKGPEIIVSRSHPELVRRLFEREVPELASGAVSIMAIAREAGARTKIAVRANTPGINP 235
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIE 309
GA +G GSRV+AV+ L EKIDI+ WS + A F+ AL PA+V+ V + E
Sbjct: 236 KGALIGPGGSRVRAVMENLGSEKIDIIDWSANPAEFIAAALSPAVVSDVQVISEKNQTAI 295
Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
+ EQLSLAIG+ GQN RLA++LTGW I I
Sbjct: 296 AFINDEQLSLAIGKEGQNARLAAKLTGWKIGI 327
>gi|298345265|ref|YP_003717952.1| transcription elongation factor [Mobiluncus curtisii ATCC 43063]
gi|298235326|gb|ADI66458.1| transcription elongation factor [Mobiluncus curtisii ATCC 43063]
Length = 328
Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats.
Identities = 127/341 (37%), Positives = 189/341 (55%), Gaps = 25/341 (7%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-IRVEINPETGDISLFRLLEV 68
+ V EK +D + ++ + ++ KA R+ G + RVE++ +TG++ +
Sbjct: 5 MSALRLVEAEKGMDMNSLIDTVEQALLKAYRNQPGAEKEHSRVEVDRKTGEVRVL----- 59
Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
V E++ ++ + P DFGR A + K VIIQ+ +E E
Sbjct: 60 VNELDEDGTELG-----------------ESEITPKDFGRTAAATVKSVIIQRFQEEEDK 102
Query: 129 RQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+FKD+VG+++SG V + V V+LG+ +G+I E + E + G R+ Y+
Sbjct: 103 AVLGDFKDRVGQVVSGVVTAGRDPKLVTVNLGDVEGIIPPAEQVPGEKYQHGVRLSVYVL 162
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
R +GP + LSRTHP + LF EVPEI V +++V+R+PG R K+AV ++
Sbjct: 163 AASRGFKGPHIELSRTHPGLVQGLFKREVPEIDREEVVIESVAREPGHRTKIAVRPTEKG 222
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVG 306
I+ GAC+G GSRV+AV+ EL EKIDIV W+ D +V NAL PA V V +DE
Sbjct: 223 INAKGACIGPNGSRVRAVMNELNGEKIDIVDWAEDPTVYVANALSPAKVISVRVIDEAKR 282
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347
V+VP Q SLAIG+ GQN RLAS+LTGW IDI ++ E+
Sbjct: 283 LARVVVPDFQQSLAIGKEGQNARLASRLTGWGIDIHSDTEN 323
>gi|24213642|ref|NP_711123.1| transcription elongation factor NusA [Leptospira interrogans
serovar Lai str. 56601]
gi|45658541|ref|YP_002627.1| transcription elongation factor NusA [Leptospira interrogans
serovar Copenhageni str. Fiocruz L1-130]
gi|24194444|gb|AAN48141.1| transcription elongation factor NusA [Leptospira interrogans
serovar Lai str. 56601]
gi|45601784|gb|AAS71264.1| NusA [Leptospira interrogans serovar Copenhageni str. Fiocruz
L1-130]
Length = 460
Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats.
Identities = 145/466 (31%), Positives = 230/466 (49%), Gaps = 31/466 (6%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIR------VEINPETGD--I 60
LL+ +KS+DR+ V+ V+ DS+ A + G V + +G +
Sbjct: 12 LLEAIQQFCADKSLDREAVMGVIRDSLITAYKKKSGLEESSELEKPSPVTVEFASGKDSV 71
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
+ +VV + +ISL+ A+ D S +IG V+S P++ R+ AKQ++ Q
Sbjct: 72 VIAIAKKVVSGNPSSALEISLEDAKAIDASAEIGSVISFREKPVELSRIISSQAKQMVFQ 131
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
++++ E++ + E+K K GE+ G +R + + +DLG +G++ R E E GD
Sbjct: 132 RLKDMEKELLFNEYKAKEGELTHGYFQRWKKDAMSIDLGKVEGIMPRREQNPGEKYHSGD 191
Query: 181 RVKSYIYDVRREQRGPQ--VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
R+K+ I V R P + LSR F+ KLF ME+PEIY+G+V++ V+R P R K
Sbjct: 192 RLKAIIQRVELRPREPIPVITLSRASADFVRKLFEMEIPEIYDGLVEIINVARQPSIRTK 251
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+ V ++ IDPVGACVGM+G R+Q++V EL +E+IDIV S D++ F+ NA+ PA +
Sbjct: 252 VVVRATRGDIDPVGACVGMKGVRIQSIVRELGNERIDIVESSDDASEFIANAISPAKPVE 311
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
V +D V+VP +QLSLAIG G NV+LASQL G+ IDI T + +
Sbjct: 312 VKVDGSGREAMVVVPDDQLSLAIGINGSNVKLASQLAGYKIDIKTVTQYNAELASPEAR- 370
Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418
L F E V + + E E + R L+
Sbjct: 371 ------------ERLERL----FYSPVEETKVSMEQEEEEELTPLEDLPGLSARIVGILK 414
Query: 419 GIDITLQKKIRELGVSEELCSIPGI---DSKIKVALGENGIKTMED 461
I + + E ++L + GI + + L ++ +ED
Sbjct: 415 SEGIKDLETLIEYS-QDDLAKLQGIGHTTAGQILKLLRESVEWVED 459
>gi|315655685|ref|ZP_07908583.1| transcription termination factor NusA [Mobiluncus curtisii ATCC
51333]
gi|315489749|gb|EFU79376.1| transcription termination factor NusA [Mobiluncus curtisii ATCC
51333]
Length = 328
Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats.
Identities = 127/341 (37%), Positives = 190/341 (55%), Gaps = 25/341 (7%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-IRVEINPETGDISLFRLLEV 68
+ V EK +D + ++ + ++ KA R+ G + RVE++ +TG++ +
Sbjct: 5 MSALRLVEAEKGMDMNSLIDTVEQALLKAYRNQPGAEKEHSRVEVDRKTGEVRVL----- 59
Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
V+E++ ++ + P DFGR A + K VIIQ+ +E E
Sbjct: 60 VKELDEDGTELG-----------------ESEITPKDFGRTAAATVKSVIIQRFQEEEDK 102
Query: 129 RQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+FKD+VG+++SG V + V V+LG+ +G+I E + E + G R+ Y+
Sbjct: 103 AVLGDFKDRVGQVVSGVVTAGRDPKLVTVNLGDVEGIIPPAEQVPGEKYQHGVRLSVYVL 162
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
R +GP + LSRTHP + LF EVPEI V +++V+R+PG R K+AV ++
Sbjct: 163 AASRGFKGPHIELSRTHPGLVQGLFKREVPEIDREEVVIESVAREPGHRTKIAVRPTEKG 222
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVG 306
I+ GAC+G GSRV+AV+ EL EKIDIV W+ D +V NAL PA V V +DE
Sbjct: 223 INAKGACIGPNGSRVRAVMNELNGEKIDIVDWAEDPTVYVANALSPAKVISVRVIDEAKR 282
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347
V+VP Q SLAIG+ GQN RLAS+LTGW IDI ++ E+
Sbjct: 283 LARVVVPDFQQSLAIGKEGQNARLASRLTGWGIDIHSDTEN 323
>gi|154509097|ref|ZP_02044739.1| hypothetical protein ACTODO_01614 [Actinomyces odontolyticus ATCC
17982]
gi|153798731|gb|EDN81151.1| hypothetical protein ACTODO_01614 [Actinomyces odontolyticus ATCC
17982]
Length = 342
Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats.
Identities = 124/363 (34%), Positives = 204/363 (56%), Gaps = 26/363 (7%)
Query: 7 LEL-LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+E+ + V EK + + ++ + +++ KA +L G +S R+EI+ +TG +++
Sbjct: 1 MEIDMTALRMVENEKGVSLETLVDAIEEALLKAYHNLPGAISQARIEIDKKTGRVTV--- 57
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+++ D +P + P +FGR+A +A+ VI+Q++R+A
Sbjct: 58 -------------MAMDEDEDGNPIGEFDDT------PKNFGRIAQSTARSVIMQRLRDA 98
Query: 126 ERDRQYLEFKDKVGEIISGTVK--RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183
+ R + +F + G+II+GTV+ R ++ + + V+ E + E+ R GDR++
Sbjct: 99 DDQRVFGDFAGREGQIITGTVQAPRPGRPTMVQVSDDFEAVLPDGEKVPGESYRHGDRIR 158
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+Y+ V R +RGP++ LSRTHP + LF EVPEI G+V++KA++R+ G R K+AV +
Sbjct: 159 AYVVGVERTERGPRITLSRTHPNLVAGLFQREVPEIQQGLVKIKAIAREAGHRTKIAVAA 218
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
+ I+ GAC+G G+RV++V+ +L EKIDIV +S D A FV N+L PA VT+VV+
Sbjct: 219 TREGINAKGACIGPMGARVRSVMADLGGEKIDIVDYSDDPARFVANSLSPARVTRVVVHS 278
Query: 304 -DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
D IVP QLSLAIG+ GQN RLA++LT + IDI + E +
Sbjct: 279 VDNRTATAIVPDFQLSLAIGKEGQNARLAARLTNYHIDIHADTETGDDAIASRVSTPDDV 338
Query: 363 MQA 365
Sbjct: 339 TSR 341
>gi|314923905|gb|EFS87736.1| transcription termination factor NusA [Propionibacterium acnes
HL001PA1]
gi|314966035|gb|EFT10134.1| transcription termination factor NusA [Propionibacterium acnes
HL082PA2]
gi|315094983|gb|EFT66959.1| transcription termination factor NusA [Propionibacterium acnes
HL060PA1]
gi|315104208|gb|EFT76184.1| transcription termination factor NusA [Propionibacterium acnes
HL050PA2]
gi|327328082|gb|EGE69851.1| transcription termination factor NusA [Propionibacterium acnes
HL103PA1]
Length = 323
Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats.
Identities = 130/340 (38%), Positives = 198/340 (58%), Gaps = 25/340 (7%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
L + +K I D +L+ + D++ A ++ +V+++ +TG++++
Sbjct: 5 LSTLRMIERDKDIPLDYLLTTLEDALLNAYDKTEAPVNGAKVQLDRKTGNVAVML----- 59
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
++D + G P DFGRVA +A+QVI Q++REAE ++
Sbjct: 60 ---------------PEKDEEGQVVGWYD--GTPEDFGRVAASTARQVIFQRLREAEDEQ 102
Query: 130 QYLEFKDKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+Y F G++I+G V++ + V VDLG+ +G++ E + E G R++ Y+
Sbjct: 103 KYGHFSAVEGDVITGVVQQSYRDTRTVRVDLGSLEGIMPPAEQVPGEKYSHGRRIRVYVV 162
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
VR+E RGPQV++SRTHP + KLF MEVPEI G+V++KA++R+ G R+K+AV S +
Sbjct: 163 AVRKEARGPQVIVSRTHPNLVRKLFAMEVPEIEQGVVEIKALAREAGHRSKIAVVSHNPD 222
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVG 306
+ GAC+G G RV+AV+ EL +EKIDI+ WS D A FV AL P+ V+ V +D
Sbjct: 223 VSAKGACIGPMGQRVRAVMHELDEEKIDIIDWSGDPAEFVGAALSPSKVSSVTVIDSKAK 282
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346
IVP QLSLAIGR GQN RLA++LTGW IDI + +
Sbjct: 283 TARAIVPDYQLSLAIGREGQNARLAARLTGWRIDIRPDNK 322
>gi|304390822|ref|ZP_07372774.1| transcription termination factor NusA [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|304325705|gb|EFL92951.1| transcription termination factor NusA [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
Length = 328
Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats.
Identities = 127/341 (37%), Positives = 191/341 (56%), Gaps = 25/341 (7%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-IRVEINPETGDISLFRLLEV 68
+ V EK +D + +++ + ++ KA R+ G + RVE++ +TG++ +
Sbjct: 5 MSALRLVEAEKGMDMNSLINTVEQALLKAYRNQPGAEKEHSRVEVDRKTGEVRVL----- 59
Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
V+E++ ++ + P DFGR A + K VIIQ+ +E E
Sbjct: 60 VKELDEDGTELG-----------------ESEITPKDFGRTAAATVKSVIIQRFQEEEDK 102
Query: 129 RQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+FKD+VG+++SG V + V V+LG+ +G+I E + E + G R+ Y+
Sbjct: 103 AVLGDFKDRVGQVVSGVVTAGRDPKLVTVNLGDVEGIIPPAEQVPGEKYQHGVRLSVYVL 162
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
R +GP + LSRTHP + LF EVPEI V +++V+R+PG R K+AV ++
Sbjct: 163 AASRGFKGPHIELSRTHPGLVQGLFKREVPEIDREEVVIESVAREPGHRTKIAVRPTEKG 222
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVG 306
I+ GAC+G GSRV+AV+ EL EKIDIV W+ D +V NAL PA V V +DE
Sbjct: 223 INAKGACIGPNGSRVRAVMNELNGEKIDIVDWAEDPTVYVANALSPAKVISVRVIDEAKR 282
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347
V+VP Q SLAIG+ GQN RLAS+LTGW IDI ++ E+
Sbjct: 283 LARVVVPDFQQSLAIGKEGQNARLASRLTGWGIDIHSDTEN 323
>gi|326335427|ref|ZP_08201614.1| N utilization substance protein A [Capnocytophaga sp. oral taxon
338 str. F0234]
gi|325692193|gb|EGD34145.1| N utilization substance protein A [Capnocytophaga sp. oral taxon
338 str. F0234]
Length = 411
Score = 271 bits (692), Expect = 3e-70, Method: Composition-based stats.
Identities = 127/418 (30%), Positives = 229/418 (54%), Gaps = 12/418 (2%)
Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64
N L+L++ +K IDR+ ++S++ + + A + YG+ + + INP+ GDI ++R
Sbjct: 3 NNLDLIESFSEFRDDKLIDREALMSILDEVFKTALKKKYGSDENFDIIINPDKGDIEIWR 62
Query: 65 LLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+V++ VEN +I L A + ++G VS+ + GR A+ + +Q +I KV
Sbjct: 63 NRIIVDDGMVENPNAEIPLSEALKIESDFEVGEEVSEEVKISQLGRRAILALRQNLISKV 122
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDR 181
E + + Y +FK+ +G I + + ++ VI+ D ++ ++ RD I + + G+
Sbjct: 123 HEYDNNTIYKKFKELIGGIYTAEIHHIKGKTVILLDDDGNEILLPRDRQIPSDFFKKGET 182
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K I V + P ++LSRT P F+ +LF E+PEI +G++ ++ V+R PG +AK+AV
Sbjct: 183 IKGIIESVDFKGNKPAIILSRTSPLFLERLFEQEIPEIADGLITIQKVARIPGEKAKIAV 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S D IDPVGACVG+ G+R++++V EL +E ID++ +S + + F+ AL PA +T + +
Sbjct: 243 DSYDDRIDPVGACVGVNGARIRSIVRELGNENIDVINFSNNISLFISKALAPAKITSITV 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
+E+ R EV++ E++S AIG+ G N+RLAS LTG+ ID+ E + +F + +
Sbjct: 303 NEETKRAEVLLASEEVSKAIGKGGSNIRLASMLTGYEIDVFREGAEEDIELSEFEDEIEP 362
Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
++ G + + E+ + ET ++ +E E
Sbjct: 363 WI---------IEEFRRIGLDTAKSVLEYSAEELEKRVDLELETIQDVLRILKEEFEN 411
>gi|149197530|ref|ZP_01874581.1| transcription elongation factor NusA [Lentisphaera araneosa
HTCC2155]
gi|149139548|gb|EDM27950.1| transcription elongation factor NusA [Lentisphaera araneosa
HTCC2155]
Length = 413
Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats.
Identities = 137/411 (33%), Positives = 232/411 (56%), Gaps = 5/411 (1%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
EL+ + + + EK+ID+ ++ ++ D++ G S+I+VEIN TGD+++
Sbjct: 2 NSELVAMVEYLEQEKAIDKAILFDLIEDAMASVYEKEVGEESEIKVEINRRTGDVTIIAD 61
Query: 66 LEVVEEVENYTCQISLKVARDRD-PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
+ + EEV + +I L A+ + IG V L R+A Q+ +Q I+Q++R
Sbjct: 62 VVIAEEVFDKRHEIDLASAQKEYGDEVAIGDTVKWTLQQDQMSRIAAQNTRQAIMQRLRT 121
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
E++R E+ D VGE+ISGTV+ E +IVD G + G + + + + RE GD + +
Sbjct: 122 FEKERVVEEYSDMVGELISGTVRHFEKNELIVDFGRAQGGLGKMDRVPRERFDNGDHITA 181
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ ++ + GP ++LSRT + + KLF EV EI NG+V++KAV+R G R K+AV S
Sbjct: 182 LLKEIDERKSGPSIVLSRTDAKLVTKLFEREVTEITNGLVEIKAVARKAGFRTKIAVAS- 240
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
S+DPVGAC+G+RGSRV+ + EL +EK+DI+ +S D +V A +P + +V +D+D
Sbjct: 241 -DSLDPVGACIGIRGSRVKTICQELNNEKLDIIGYSEDEEEYVREAFKPNPIEEVEIDQD 299
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED-SINRQKDFNERTQFFM 363
I+++V +E +GR G+N+RL +L W I++ D I + E Q M
Sbjct: 300 GRLIKLLVSEESYKSIVGRDGENIRLTEELMDWDIEVEKYVYDTEITFDEHIQEAYQTMM 359
Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414
+ N+DE A +++ G+ +E ++ ++ G + + A EI A+
Sbjct: 360 KLPNMDEGKARMMIDGGYLSLEGVSEASTDDLVE-AGIEADHATEIIEYAK 409
>gi|311113215|ref|YP_003984437.1| transcription termination factor NusA [Rothia dentocariosa ATCC
17931]
gi|310944709|gb|ADP41003.1| transcription termination factor NusA [Rothia dentocariosa ATCC
17931]
Length = 349
Score = 269 bits (689), Expect = 5e-70, Method: Composition-based stats.
Identities = 128/369 (34%), Positives = 209/369 (56%), Gaps = 25/369 (6%)
Query: 5 NRLEL-LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
N + + L + A+A ++ + + + S++ +++ A G + R I+ TGD ++
Sbjct: 3 NNMTIDLGVLHALAKQRGLVLEELFSLVENALVLAYMKQPGAIKGSRAVIDRTTGDFAIL 62
Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
A + D D P +FGR+A + +QV+ Q++R
Sbjct: 63 --------------------APELDDDNQKIDEFDD--TPNNFGRIAAATVRQVLSQRLR 100
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRV 182
+AE EFKD+ G + SG +++ ++ VDLG + V+ +E + E G R+
Sbjct: 101 DAEDASVLGEFKDREGTLASGVIQQGNNPRMVQVDLGTIEAVLPANEQVPGEQYPHGTRI 160
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
++Y+ + RR Q+GP ++LSR+HP +++LF EVPEI +G V++ +++R+ G R+K+AV
Sbjct: 161 RAYLLEARRGQKGPSIVLSRSHPNLVLRLFEHEVPEIADGSVKINSIAREAGHRSKIAVS 220
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL- 301
+++ SI+ GAC+G G+RV+AV EL DEKIDIV +S D A F+ AL PA VT+V++
Sbjct: 221 ATNPSINAKGACIGDMGARVRAVAAELNDEKIDIVDYSTDPAEFITAALSPAKVTEVIIA 280
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
D IVP EQLSLAIGR GQN RLA++LTGW IDI+ E + + R ++
Sbjct: 281 DPREYSARAIVPDEQLSLAIGREGQNARLAAKLTGWRIDILAESKYAQIRAEEEVAERVA 340
Query: 362 FMQAINVDE 370
++ +E
Sbjct: 341 RSLDLDENE 349
>gi|313206787|ref|YP_004045964.1| nusa antitermination factor [Riemerella anatipestifer DSM 15868]
gi|312446103|gb|ADQ82458.1| NusA antitermination factor [Riemerella anatipestifer DSM 15868]
gi|315023860|gb|EFT36862.1| transcription elongation factor NusA [Riemerella anatipestifer
RA-YM]
gi|325335773|gb|ADZ12047.1| Transcription elongation factor [Riemerella anatipestifer RA-GD]
Length = 411
Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats.
Identities = 118/410 (28%), Positives = 219/410 (53%), Gaps = 11/410 (2%)
Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
+ L L++ EK+I + +++++ DS++ R Y + V +NP+ GD +F
Sbjct: 1 MDNLALIEAFGDFKEEKNISKIDLMAIIEDSLKTLLRKRYDSDDHFDVIVNPDKGDFQIF 60
Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
+VE+ E+ +I + AR DP+ ++G + + GR + + KQ++ K
Sbjct: 61 LNKTIVEDQMSEDDDLEIEISEARKTDPTFEVGEEFTQEIKVSQLGRRNILTLKQILATK 120
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGD 180
++E Y +FKD++GEI+ G V + + +VI+ D ++ ++ +D+ I + R GD
Sbjct: 121 IQEHHNAYLYEQFKDRIGEIMVGEVHHIRFKHVILLDDEGNEYILPKDKQIPSDFFRKGD 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
V++ I V + PQ+ +SR P+F+ +L +E+PEI +G + +K V R PG +AK+A
Sbjct: 181 NVRAVIESVDFKGSKPQITISRISPKFLERLLELEIPEIQDGTIILKKVVRIPGEKAKIA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V + D IDPVGACVG++GSR+ VV ELR+E ID++ WS + V AL + K+
Sbjct: 241 VDAYDDRIDPVGACVGVKGSRIHGVVRELRNENIDVIQWSKNPEILVKRALGNVTINKID 300
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
++ + + V P E+++ IG++GQN++LAS L+ + ID+ E + + +
Sbjct: 301 INAEESKALVYTPSEEIAKIIGKQGQNIKLASWLSDYEIDVYREAHED--------DDVE 352
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410
+ +++ + G + + + + +EET E++
Sbjct: 353 LDEFSDEIEDWVIETFKKVGLDTAKSIIDKDTEALVRLTDLEEETIEEVK 402
>gi|239621506|ref|ZP_04664537.1| transcription elongation factor NusA [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|296454835|ref|YP_003661979.1| NusA antitermination factor [Bifidobacterium longum subsp. longum
JDM301]
gi|239515381|gb|EEQ55248.1| transcription elongation factor NusA [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|296184267|gb|ADH01149.1| NusA antitermination factor [Bifidobacterium longum subsp. longum
JDM301]
Length = 355
Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats.
Identities = 117/330 (35%), Positives = 194/330 (58%), Gaps = 17/330 (5%)
Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV-VEEVEN 74
+A E+ ID + + +A++++ A RVE++ +G+ +++ E+ VE E+
Sbjct: 11 LAAEQGIDPETLDDALAEALRLAYLKTPHAAKHARVELDERSGNFTVWAADEIPVEPTED 70
Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134
P+ +G D P DFGR+A +A+QVI Q R AE ++ + F
Sbjct: 71 NPY-----------PAPKLGEEYDD--TPRDFGRLAAATARQVITQLFRRAEDEKVFGAF 117
Query: 135 KDKVGEIISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192
+ G++I+G +++ + NV V +G+ + ++ R E + E R G+R++ Y+ +V R
Sbjct: 118 SGQKGKLITGIIQQDASDPSNVHVAMGDVEAILPRREQVPGERYRHGERIRVYVVNVARG 177
Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252
+GP++++SR+HP+ + KLF EVPE+ +G V + A++R+ G+R K+AV ++ ++P G
Sbjct: 178 IKGPEIVVSRSHPELVRKLFEREVPELVSGAVSIMAIAREAGARTKIAVKANTDGVNPKG 237
Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVI 311
A +G G+RV+AV+ L EKIDIV +S D A FV AL PA+ T V + E
Sbjct: 238 ALIGPGGARVRAVMENLGPEKIDIVDYSDDPAKFVAAALSPAVATGVQVISEKNKTAIAF 297
Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
+ +QLSLAIG+ GQN RLA++LTGW I I
Sbjct: 298 IHDDQLSLAIGKEGQNARLAAKLTGWKIGI 327
>gi|186685820|ref|YP_001869016.1| transcription elongation factor NusA [Nostoc punctiforme PCC 73102]
gi|186468272|gb|ACC84073.1| NusA antitermination factor [Nostoc punctiforme PCC 73102]
Length = 425
Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats.
Identities = 132/370 (35%), Positives = 205/370 (55%), Gaps = 29/370 (7%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAA----------RSLYGTM--SDIRVEINPE 56
L ++ ++++ E+++ R V S + +++ K R + + VE++ +
Sbjct: 9 LKELIESISRERNLPRLAVQSAIREALLKGYERYRRAQNLERKQFDEDYFENFEVELDID 68
Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114
+ +VEEV N QISL + P +G V + P +FGR+A
Sbjct: 69 GEGFRVLSTKTIVEEVNNTDHQISLDEVQQVAPEAQLGDSVVLDVTPDQGEFGRMAAMQT 128
Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRD 168
KQV+ QK+R+ +R EF+D G ++ V R E +V++ + + + +
Sbjct: 129 KQVLAQKLRDQQRQMVQEEFQDLEGTVLQARVLRFERQSVVLAVSSGFGQPEVEAELPKR 188
Query: 169 ETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227
E + +N R K Y+ V + +QRGPQ+L+SR +V LF EVPEI + +V++
Sbjct: 189 EQLPNDNYRANATFKVYLKKVSQGQQRGPQLLVSRADAGLVVYLFANEVPEIEDEVVRIV 248
Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280
AV+R+ G R K+AV + D +DPVGAC+G RGSR+Q VV ELR EKID++ WS
Sbjct: 249 AVAREANPPSRYVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWS 308
Query: 281 PDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
PD AT++ NAL PA V +V L D + + V+V ++QLSLAIG+ GQNVRLA++LTGW I
Sbjct: 309 PDPATYIANALSPARVDEVRLMDPESRQTHVLVAEDQLSLAIGKEGQNVRLAARLTGWKI 368
Query: 340 DIITEEEDSI 349
DI + +
Sbjct: 369 DIKDKAKYDY 378
>gi|281414299|ref|ZP_06246041.1| transcription termination factor NusA [Micrococcus luteus NCTC
2665]
gi|289705159|ref|ZP_06501562.1| transcription termination factor NusA [Micrococcus luteus SK58]
gi|289558103|gb|EFD51391.1| transcription termination factor NusA [Micrococcus luteus SK58]
Length = 328
Score = 269 bits (688), Expect = 7e-70, Method: Composition-based stats.
Identities = 121/337 (35%), Positives = 187/337 (55%), Gaps = 24/337 (7%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ + E+ I D ++ + ++ A G + RVEI+ TG ++++
Sbjct: 5 MSALRMLEAEREIPMDRLIPTIEQALLMAYHRTPGALKRARVEIDRATGHVTVWAT---- 60
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
E++ I P FGRVA +A+QV+IQ++RE + D+
Sbjct: 61 -ELDEDDTPIG-----------------EFDDTPNGFGRVAASTARQVMIQRMREEDDDK 102
Query: 130 QYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
EFKDK GE++SG +++ V V+LG + V+ E + E+ G R+++Y+
Sbjct: 103 VLGEFKDKEGELVSGVIQQGLNRHMVQVNLGTLEAVLPPPEQVPGEDYAHGRRIRAYVVS 162
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
R +GP V +SR+HP + KLF +EVPEI +G V++ A++R+ G R K+AV ++ +
Sbjct: 163 ATRGAKGPSVTVSRSHPGLVRKLFELEVPEIADGSVEITALAREAGHRTKMAVRATRPGV 222
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307
+ GA +G GSRV+AV+TEL DEKIDI+ D A + NAL PA V + D D
Sbjct: 223 NAKGASIGEMGSRVRAVMTELNDEKIDIIDHVDDPAAMIANALSPATTVSVEILDADQHS 282
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344
+VP+ QLSLAIG+ GQN RLA++LTGW IDI+ +
Sbjct: 283 ARAVVPQYQLSLAIGKEGQNARLAAKLTGWRIDIVGD 319
>gi|148273335|ref|YP_001222896.1| transcription elongation factor NusA [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
gi|147831265|emb|CAN02221.1| putative transcriptional termination/antitermination factor
[Clavibacter michiganensis subsp. michiganensis NCPPB
382]
Length = 335
Score = 269 bits (688), Expect = 7e-70, Method: Composition-based stats.
Identities = 122/353 (34%), Positives = 188/353 (53%), Gaps = 33/353 (9%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD---------IRVEINPETGDI 60
L + + E+ I + ++S++ +I A RV ++ +TG +
Sbjct: 5 LSVLRLMEREREIPFEELVSIIEQAILTAYLKHTDQADAKPVADGVPPARVHLDRKTGHV 64
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
S+ V E++ I P DFGR+A +AKQVI Q
Sbjct: 65 SVH-----VPELDEDGLVIG-----------------ESEDSPSDFGRIAAFAAKQVINQ 102
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPG 179
++R+ DR EFK + G+I++G V++ +I VDLG + ++ +E + E G
Sbjct: 103 RLRDIGDDRILGEFKGREGDIVAGVVQQGPNPRMIHVDLGTIEAILPPEEQVPGEKYVHG 162
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
R++ Y+ V R +GPQ+ +SRTHP + KLF +EVPEI G+V++ +++R+ G R K+
Sbjct: 163 SRLRVYVTSVSRGAKGPQITVSRTHPSLVRKLFALEVPEIAQGLVEIVSLAREAGHRTKI 222
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI-VTK 298
AV +++ I+ GAC+G G RV+AV EL DEKIDIV +S FV NAL PA +
Sbjct: 223 AVRATEPGINAKGACIGELGQRVRAVTAELNDEKIDIVDYSESLPVFVGNALSPARVTSS 282
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351
V+D+ + +VP QLSLAIG+ GQN RLA++LTG IDI + +
Sbjct: 283 FVIDQATKAVRALVPDYQLSLAIGKEGQNARLAAKLTGAKIDIQPDSILEGDD 335
>gi|300743965|ref|ZP_07072985.1| transcription termination factor NusA [Rothia dentocariosa M567]
gi|300380326|gb|EFJ76889.1| transcription termination factor NusA [Rothia dentocariosa M567]
Length = 345
Score = 269 bits (688), Expect = 7e-70, Method: Composition-based stats.
Identities = 127/363 (34%), Positives = 206/363 (56%), Gaps = 24/363 (6%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
L + A+A ++ + + + S++ +++ A G + R I+ TGD ++
Sbjct: 5 LGVLHALAKQRGLVLEELFSLVENALVLAYMKQPGAIKGSRAVIDRTTGDFAIL------ 58
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
A + D D P +FGR+A + +QV+ Q++R+AE
Sbjct: 59 --------------APELDDDNQKIDEFDD--TPNNFGRIAAATVRQVLSQRLRDAEDAS 102
Query: 130 QYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
EFKD+ G + SG +++ ++ VDLG + V+ +E + E G R+++Y+ +
Sbjct: 103 VLGEFKDREGTLASGVIQQGNNPRMVQVDLGTIEAVLPANEQVPGEQYPHGTRIRAYLLE 162
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
RR Q+GP ++LSR+HP +++LF EVPEI +G V++ +++R+ G R+K+AV +++ SI
Sbjct: 163 ARRGQKGPSIVLSRSHPNLVLRLFEHEVPEIADGSVKINSIAREAGHRSKIAVSATNPSI 222
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307
+ GAC+G G+RV+AV EL DEKIDIV +S D A F+ AL PA VT+V++ D
Sbjct: 223 NAKGACIGDMGARVRAVAAELNDEKIDIVDYSTDPAEFITAALSPAKVTEVIIADPREYS 282
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
IVP EQLSLAIGR GQN RLA++LTGW IDI+ E + + R ++ ++
Sbjct: 283 ARAIVPDEQLSLAIGREGQNARLAAKLTGWRIDILAESKYAQIRAEEEVAERVARSLDLD 342
Query: 368 VDE 370
+E
Sbjct: 343 ENE 345
>gi|262340805|ref|YP_003283660.1| transcription elongation factor NusA [Blattabacterium sp.
(Blattella germanica) str. Bge]
gi|262272142|gb|ACY40050.1| transcription elongation factor NusA [Blattabacterium sp.
(Blattella germanica) str. Bge]
Length = 417
Score = 269 bits (687), Expect = 9e-70, Method: Composition-based stats.
Identities = 124/416 (29%), Positives = 229/416 (55%), Gaps = 14/416 (3%)
Query: 11 QIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
+ D+ + EK+IDR +++++ +SI+ R Y + + + +NP+ GD+ ++R
Sbjct: 5 ALIDSFSDFKCEKNIDRVSLMAILEESIRCVLRKKYDSSKNYDIIVNPDQGDLEIWRNRI 64
Query: 68 VVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV++ E + +I L +AR +P +IG V++ + GR A+ S +Q ++ K+ E
Sbjct: 65 VVQDGEVKDINKEIELSIARKIEPDFEIGEEVTEKVELQSLGRRAILSLRQNLLSKINEY 124
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDRVKS 184
+ Y +FK+K+GEII+ V + +I+ D ++ V+ + E I + R GD V++
Sbjct: 125 DNTNTYKKFKNKIGEIINVEVYHILSKQIIMRDEEQNEMVLPKQEQIPSDFFRKGDPVRA 184
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ V + P +L+R F+ +LF +E+PE+ +G++ VK V+R PG +AK+AV S
Sbjct: 185 LVKRVDWKDNKPFAILTRRDEAFLEELFKLEIPEVSDGLITVKKVARIPGEKAKVAVESY 244
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVGM+GSR+ +V EL++E ID++ ++ ++ ++ AL PA V+ + ++ED
Sbjct: 245 DDRIDPVGACVGMKGSRIHPIVRELKNENIDVINYTSNTQLYITRALSPAKVSMMEVNED 304
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
+ V V E++S AIGR GQN+RLASQLTG+ I I + + +
Sbjct: 305 HKYVNVYVKLEEISRAIGRGGQNIRLASQLTGYKIHIFRDFPYEDDVELTEFSD------ 358
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
++ + G + + + ++++ +E+ ++ ++ E
Sbjct: 359 --EIEPEVLERFHKVGLNTAKSILNYRKNDLSKRTNLEEKIINKVVSILKKEFEEE 412
>gi|315656401|ref|ZP_07909290.1| transcription termination factor NusA [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|315492960|gb|EFU82562.1| transcription termination factor NusA [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length = 328
Score = 269 bits (687), Expect = 9e-70, Method: Composition-based stats.
Identities = 127/341 (37%), Positives = 190/341 (55%), Gaps = 25/341 (7%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-IRVEINPETGDISLFRLLEV 68
+ V EK +D + ++ + ++ KA R+ G + RVE++ +TG++ +
Sbjct: 5 MSALRLVEAEKGMDMNSLIDTVEQALLKAYRNQSGAEKEHSRVEVDRKTGEVRVL----- 59
Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
V+E++ ++ + P DFGR A + K VIIQ+ +E E
Sbjct: 60 VKELDEDGTELG-----------------ESEITPKDFGRTAAATVKSVIIQRFQEEEDK 102
Query: 129 RQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+FKD+VG+++SG V + V V+LG+ +G+I E + E + G R+ Y+
Sbjct: 103 AVLGDFKDRVGQVVSGVVTAGRDPKLVTVNLGDVEGIIPPAEQVPGEKYQHGVRLSVYVL 162
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
R +GP + LSRTHP + LF EVPEI V +++V+R+PG R K+AV ++
Sbjct: 163 AASRGFKGPHIELSRTHPGLVQGLFKREVPEIDREEVVIESVAREPGHRTKIAVRPTEKG 222
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVG 306
I+ GAC+G GSRV+AV+ EL EKIDIV W+ D +V NAL PA V V +DE
Sbjct: 223 INAKGACIGPNGSRVRAVMNELNGEKIDIVDWAEDPTVYVANALSPAKVISVRVIDEAKR 282
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347
V+VP Q SLAIG+ GQN RLAS+LTGW IDI ++ E+
Sbjct: 283 LARVVVPDFQQSLAIGKEGQNARLASRLTGWGIDIHSDTEN 323
>gi|295395322|ref|ZP_06805525.1| transcription termination factor NusA [Brevibacterium mcbrellneri
ATCC 49030]
gi|294971825|gb|EFG47697.1| transcription termination factor NusA [Brevibacterium mcbrellneri
ATCC 49030]
Length = 320
Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats.
Identities = 120/338 (35%), Positives = 192/338 (56%), Gaps = 24/338 (7%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
L + E+ I V++ ++ ++ A + G D R E++ +TG +++ +
Sbjct: 5 LSALRMIEREREIPMKVLVDLIEQALLIAYQRTEGYYPDARAELDTKTGKATIWAV---- 60
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
E ++ I P FGR+A Q+A+ VI Q++R+ E +
Sbjct: 61 -EFDDDDNPIG-----------------EFDDTPEGFGRIAAQTARNVIHQRLRDVEDES 102
Query: 130 QYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
FK+ GEI+SG +++ +Y +++ V+LG+ + V+ E + E G R++ YI D
Sbjct: 103 VLGSFKNHEGEIVSGVIQQGKYEDMVQVNLGDVEAVLPPHEQVPGETYEHGRRIRVYITD 162
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V + Q+GP V +SR+HP + KLF EVPEI +G V++ +++R+ G R K+AV + +
Sbjct: 163 VHKGQKGPSVTVSRSHPNLVRKLFAHEVPEIADGQVELVSLAREAGHRTKIAVAAKVPGL 222
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307
+ GAC+G G+RV+AV+ EL +EKIDIV ++ + A FV NAL PA KV +DE
Sbjct: 223 NAKGACIGEYGTRVRAVMGELGEEKIDIVDYNENPAKFVANALSPAKAAKVEVIDESAKM 282
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345
VP +QLSLAIG+ GQN RLA++LTGW IDI+ +
Sbjct: 283 ARAFVPNDQLSLAIGKEGQNARLAAKLTGWKIDIVGTD 320
>gi|189440604|ref|YP_001955685.1| transcription elongation factor NusA [Bifidobacterium longum
DJO10A]
gi|189429039|gb|ACD99187.1| Transcription elongation factor [Bifidobacterium longum DJO10A]
Length = 355
Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats.
Identities = 117/330 (35%), Positives = 193/330 (58%), Gaps = 17/330 (5%)
Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV-VEEVEN 74
+A E+ ID + + +A++++ A RVE++ +G+ +++ E+ VE E+
Sbjct: 11 LAAEQGIDPETLDDALAEALRLAYLKTPHAAKHARVELDERSGNFTVWAADEIPVEPTED 70
Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134
P +G D P DFGR+A +A+QVI Q R AE ++ + F
Sbjct: 71 NPY-----------PVPKLGEEYDD--TPRDFGRLAAATARQVITQLFRRAEDEKVFGSF 117
Query: 135 KDKVGEIISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192
+ G++I+G +++ + NV V +G+ + ++ R E + E R G+R++ Y+ +V R
Sbjct: 118 SGQKGKLITGIIQQDASDPSNVHVAMGDVEAILPRREQVPGERYRHGERIRVYVVNVARG 177
Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252
+GP++++SR+HP+ + KLF EVPE+ +G V + A++R+ G+R K+AV ++ ++P G
Sbjct: 178 IKGPEIVVSRSHPELVRKLFEREVPELVSGAVSIMAIAREAGARTKIAVKANTDGVNPKG 237
Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVI 311
A +G G+RV+AV+ L EKIDIV +S D A FV AL PA+ T V + E
Sbjct: 238 ALIGPGGARVRAVMENLGPEKIDIVDYSDDPAKFVAAALSPAVATGVQVISEKNKTAIAF 297
Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
+ +QLSLAIG+ GQN RLA++LTGW I I
Sbjct: 298 IHDDQLSLAIGKEGQNARLAAKLTGWKIGI 327
>gi|227546511|ref|ZP_03976560.1| transcription elongation factor [Bifidobacterium longum subsp.
infantis ATCC 55813]
gi|312133908|ref|YP_004001247.1| nusa [Bifidobacterium longum subsp. longum BBMN68]
gi|322689895|ref|YP_004209629.1| transcription elongation factor NusA [Bifidobacterium longum subsp.
infantis 157F]
gi|322691836|ref|YP_004221406.1| transcription elongation factor NusA [Bifidobacterium longum subsp.
longum JCM 1217]
gi|227213060|gb|EEI80939.1| transcription elongation factor [Bifidobacterium longum subsp.
infantis ATCC 55813]
gi|291516439|emb|CBK70055.1| transcription termination factor NusA [Bifidobacterium longum
subsp. longum F8]
gi|311773202|gb|ADQ02690.1| NusA [Bifidobacterium longum subsp. longum BBMN68]
gi|320456692|dbj|BAJ67314.1| transcription elongation factor NusA [Bifidobacterium longum subsp.
longum JCM 1217]
gi|320461231|dbj|BAJ71851.1| transcription elongation factor NusA [Bifidobacterium longum subsp.
infantis 157F]
Length = 355
Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats.
Identities = 117/330 (35%), Positives = 193/330 (58%), Gaps = 17/330 (5%)
Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV-VEEVEN 74
+A E+ ID + + +A++++ A RVE++ +G+ +++ E+ VE E+
Sbjct: 11 LAAEQGIDPETLDDALAEALRLAYLKTPHAAKHARVELDERSGNFTVWAADEIPVEPTED 70
Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134
P +G D P DFGR+A +A+QVI Q R AE ++ + F
Sbjct: 71 NPY-----------PVPKLGEEYDD--TPRDFGRLAAATARQVITQLFRRAEDEKVFGAF 117
Query: 135 KDKVGEIISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192
+ G++I+G +++ + NV V +G+ + ++ R E + E R G+R++ Y+ +V R
Sbjct: 118 SGQKGKLITGIIQQDASDPSNVHVAMGDVEAILPRREQVPGERYRHGERIRVYVVNVARG 177
Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252
+GP++++SR+HP+ + KLF EVPE+ +G V + A++R+ G+R K+AV ++ ++P G
Sbjct: 178 IKGPEIVVSRSHPELVRKLFEREVPELVSGAVSIMAIAREAGARTKIAVKANTDGVNPKG 237
Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVI 311
A +G G+RV+AV+ L EKIDIV +S D A FV AL PA+ T V + E
Sbjct: 238 ALIGPGGARVRAVMENLGPEKIDIVDYSDDPAKFVAAALSPAVATGVQVISEKNKTAIAF 297
Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
+ +QLSLAIG+ GQN RLA++LTGW I I
Sbjct: 298 IHDDQLSLAIGKEGQNARLAAKLTGWKIGI 327
>gi|323356820|ref|YP_004223216.1| transcription elongation factor [Microbacterium testaceum StLB037]
gi|323273191|dbj|BAJ73336.1| transcription elongation factor [Microbacterium testaceum StLB037]
Length = 329
Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats.
Identities = 122/347 (35%), Positives = 187/347 (53%), Gaps = 28/347 (8%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI----RVEINPETGDISLFRL 65
L + + EK I D + ++ +I A +I R E++ +TG + +F
Sbjct: 5 LALLKTIEREKEIPFDELARIIEQAILTAYAKHISPSGEIPAGARAELDRKTGHVGIF-- 62
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
V + E IG + P DFGR+A +AKQVI Q++R+
Sbjct: 63 -TPVTDEE----------------GAVIG---EEEQAPDDFGRIAAFAAKQVISQRLRDI 102
Query: 126 ERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
D EF+ K G+I++G V++ V VDLG + ++ +E + E G R++
Sbjct: 103 ADDAVLGEFRGKEGDIVAGVVQQGPNPRMVHVDLGTVEAILPPEEQVPGETYAHGSRLRV 162
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
Y+ V + +GPQ+ +SRTHP + KLF +EVPEI G+V++ +++R+ G R+K+AV ++
Sbjct: 163 YVTSVSKGNKGPQITVSRTHPGLVRKLFALEVPEIAAGLVEIVSLAREAGHRSKIAVKAN 222
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI-VTKVVLDE 303
D +++ GAC+G G RV+AV EL EKIDI+ + + FV NAL PA + VLD
Sbjct: 223 DPTVNAKGACIGELGRRVRAVTEELAGEKIDIIDYDAELPRFVANALSPAKVTSSFVLDA 282
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350
+ +VP QLSLAIG+ GQN RLA++LTG IDI + N
Sbjct: 283 STKAVRALVPDYQLSLAIGKEGQNARLAAKLTGAKIDIQPDSILEDN 329
>gi|298490031|ref|YP_003720208.1| NusA antitermination factor ['Nostoc azollae' 0708]
gi|298231949|gb|ADI63085.1| NusA antitermination factor ['Nostoc azollae' 0708]
Length = 425
Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats.
Identities = 131/369 (35%), Positives = 204/369 (55%), Gaps = 29/369 (7%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAA----------RSLYGTM--SDIRVEINPE 56
L ++ ++++ E+++ R V S + +++ K R + + VE++ +
Sbjct: 9 LKELIESISRERNLPRLAVQSSIREALLKGYERYRRAQNLERKQFDEDYFDNFEVELDID 68
Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114
+ +VE+V N QISL+ + P G V + P +FGR+A
Sbjct: 69 GEGFRVLSTKTIVEQVNNSDHQISLEEVQQVAPEAQSGDSVVLDVTPDQGEFGRMAAMQT 128
Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRD 168
KQV+ QK+R+ +R EF+D ++ V R E +VI+ + + + +
Sbjct: 129 KQVLAQKLRDQQRQMVQEEFQDLESTVLQARVLRFERQSVILAVTSGFGQPEVEAELPKR 188
Query: 169 ETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227
E + +N R K Y+ V + +QRGPQ+L+SR +V LF EVPEI + +V++
Sbjct: 189 EQLPNDNYRANATFKVYLKKVSQGQQRGPQLLVSRADAGLVVYLFANEVPEIEDEVVRIV 248
Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280
AV+R+ G R K+AV + D +DPVGAC+G RGSR+Q VV ELR EKID++ WS
Sbjct: 249 AVAREANPPSRYVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWS 308
Query: 281 PDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
PD AT++ NAL PA V +V L D + + V+V ++QLSLAIG+ GQNVRLA++LTGW I
Sbjct: 309 PDPATYIANALSPARVDEVRLMDPESRQTHVLVAEDQLSLAIGKEGQNVRLAARLTGWKI 368
Query: 340 DIITEEEDS 348
DI + +
Sbjct: 369 DIKDKAKYD 377
>gi|213693052|ref|YP_002323638.1| NusA antitermination factor [Bifidobacterium longum subsp. infantis
ATCC 15697]
gi|213524513|gb|ACJ53260.1| NusA antitermination factor [Bifidobacterium longum subsp. infantis
ATCC 15697]
gi|320459229|dbj|BAJ69850.1| transcription elongation factor NusA [Bifidobacterium longum subsp.
infantis ATCC 15697]
Length = 355
Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats.
Identities = 117/330 (35%), Positives = 193/330 (58%), Gaps = 17/330 (5%)
Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV-VEEVEN 74
+A E+ ID + +A++++ A RVE++ +G+ +++ E+ VE E+
Sbjct: 11 LAAEQGIDPGTLDDALAEALRLAYLKTPHAAKHARVELDERSGNFTVWAADEIPVEPTED 70
Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134
P+ +G D P DFGR+A +A+QVI Q R AE ++ + F
Sbjct: 71 NPH-----------PAPKLGEEYDD--TPRDFGRLAAATARQVITQLFRRAEDEKVFGAF 117
Query: 135 KDKVGEIISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192
+ G++I+G +++ + NV V +G+ + ++ R E + E R G+R++ Y+ +V R
Sbjct: 118 SGQKGKLITGIIQQDASDPSNVHVAMGDVEAILPRREQVPGERYRHGERIRVYVVNVARG 177
Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252
+GP++++SR+HP+ + KLF EVPE+ +G V + A++R+ G+R K+AV ++ ++P G
Sbjct: 178 IKGPEIVVSRSHPELVRKLFEREVPELVSGAVSIMAIAREAGARTKIAVKANTDGVNPKG 237
Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVI 311
A +G G+RV+AV+ L EKIDIV +S D A FV AL PA+ T V + E
Sbjct: 238 ALIGPGGARVRAVMENLGPEKIDIVDYSDDPAKFVAAALSPAVATGVQVISEKNKTAIAF 297
Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
+ +QLSLAIG+ GQN RLA++LTGW I I
Sbjct: 298 IHDDQLSLAIGKEGQNARLAAKLTGWKIGI 327
>gi|220907502|ref|YP_002482813.1| transcription elongation factor NusA [Cyanothece sp. PCC 7425]
gi|219864113|gb|ACL44452.1| NusA antitermination factor [Cyanothece sp. PCC 7425]
Length = 413
Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats.
Identities = 128/371 (34%), Positives = 199/371 (53%), Gaps = 29/371 (7%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARS----------LYGTM--SDIRVEINPE 56
L ++ +A++ E+++ + V + +++ K + + VEI+ E
Sbjct: 9 LREMINAISRERNLPKYAVQGALQEALMKGYERYRRTLRLEGGHFDEDYFQNFDVEIDVE 68
Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114
+ +VE+V+N QISL ++ +G V + P +FGR+A A
Sbjct: 69 EEGFRVLATKTIVEQVDNPDHQISLSEVQEVAAEAQLGDTVILDVTPEQQEFGRMAAIQA 128
Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRD 168
KQV+ QK+R+ +R EF+D ++ V R E +VI+ + + + +
Sbjct: 129 KQVLAQKLRDQQRKLVQEEFQDLESTVLQARVLRFERRSVIMAVSSGFGQPEVEAELPKK 188
Query: 169 ETISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227
E + +N R K Y+ V RGPQ+L+SR +V LF EVPEI + +V++
Sbjct: 189 EQLPNDNYRANATFKVYLKKVLEGPHRGPQLLVSRADAGLVVYLFANEVPEIEDEVVRIV 248
Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280
AV+R+ G R K+AV + + +DPVGAC+G RGSR+QAVV ELR EKID++ WS
Sbjct: 249 AVAREANPPSRQVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGEKIDVIRWS 308
Query: 281 PDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
PD AT++ NAL PA V +V L + + + ++V +QLSLAIG+ GQNVRLA++LTGW I
Sbjct: 309 PDPATYIANALSPARVEEVRLMNPEERQAHILVTDDQLSLAIGKEGQNVRLAARLTGWKI 368
Query: 340 DIITEEEDSIN 350
DI
Sbjct: 369 DIKDIATYDYE 379
>gi|313836822|gb|EFS74536.1| transcription termination factor NusA [Propionibacterium acnes
HL037PA2]
gi|314929769|gb|EFS93600.1| transcription termination factor NusA [Propionibacterium acnes
HL044PA1]
gi|314972198|gb|EFT16295.1| transcription termination factor NusA [Propionibacterium acnes
HL037PA3]
gi|328907626|gb|EGG27390.1| transcription elongation factor NusA [Propionibacterium sp. P08]
Length = 323
Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats.
Identities = 130/341 (38%), Positives = 193/341 (56%), Gaps = 27/341 (7%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
L + +K I D +L+ + D++ A + +V+++ TG++
Sbjct: 5 LSTLRMIERDKDIPLDYLLTTLEDALLNAYDKTEAPVRGAKVQLDRTTGNV--------- 55
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSD-PLPPMDFGRVAVQSAKQVIIQKVREAERD 128
A + G V+ P DFGRVA +A+QVI Q++REAE +
Sbjct: 56 --------------AVMLPEKDEEGEVIGWYDGTPEDFGRVAASTARQVIFQRLREAEDE 101
Query: 129 RQYLEFKDKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
++Y F G++++G V++ + V VDLG +G++ E + E G R++ Y+
Sbjct: 102 QKYGHFAAVEGDVVTGVVQQSYRDTRTVRVDLGTLEGIMPPSEQVPGEKYFHGRRIRVYV 161
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
VR+E RGPQV++SRTHP + KLF MEVPEI +V++KA++R+ G R+K+AV S +S
Sbjct: 162 VAVRKEARGPQVIVSRTHPNLVRKLFAMEVPEIEQEVVEIKALAREAGHRSKIAVVSHNS 221
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDV 305
+ GAC+G G RV+AV+ EL +EKIDI+ WS D A FV AL P+ V+ V +D
Sbjct: 222 DVSAKGACIGPMGQRVRAVMHELGEEKIDIIDWSEDPAEFVGAALSPSKVSSVTVIDPKA 281
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346
IVP QLSLAIGR GQN RLA++LTGW IDI + +
Sbjct: 282 KTARAIVPDYQLSLAIGREGQNARLAARLTGWRIDIRPDNQ 322
>gi|315604477|ref|ZP_07879542.1| transcription termination factor NusA [Actinomyces sp. oral taxon
180 str. F0310]
gi|315313804|gb|EFU61856.1| transcription termination factor NusA [Actinomyces sp. oral taxon
180 str. F0310]
Length = 342
Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats.
Identities = 126/363 (34%), Positives = 205/363 (56%), Gaps = 26/363 (7%)
Query: 7 LEL-LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+E+ + V EK + + ++ + +++ KA +L G +S R+EI+ +TG +++
Sbjct: 1 MEIDMTALRMVENEKGVSLETLVDAIEEALLKAYHNLPGAISQARIEIDKKTGRVTV--- 57
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+++ D +P + P +FGR+A +A+ VI+Q++R+A
Sbjct: 58 -------------MAMDEDEDGNPIGEFDDT------PKNFGRIAQATARSVIMQRLRDA 98
Query: 126 ERDRQYLEFKDKVGEIISGTVK--RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183
+ R + +F + G++I+GTV+ R ++ + + V+ E + E R GDR++
Sbjct: 99 DDQRVFGDFAGREGQVITGTVQAPRPGRPTMVQVSDDFEAVLPDGEKTAGETYRHGDRIR 158
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+YI V R +RGP++ LSRTHP + LF EVPEI G+V++KA++R+ G R K+AV +
Sbjct: 159 AYIVGVERTERGPRITLSRTHPNLVAGLFQREVPEIQQGLVKIKAIAREAGHRTKIAVVA 218
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
+ I+ GAC+G G+RV++V+ EL EKIDIV +S D A FV N+L PA VT+VV+
Sbjct: 219 TRDGINAKGACIGPMGARVRSVMAELGGEKIDIVDYSDDPARFVANSLSPARVTRVVVHS 278
Query: 304 -DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
D IVP QLSLAIG+ GQN RLA++LTG+ IDI + E +
Sbjct: 279 VDNRTATAIVPDFQLSLAIGKEGQNARLAARLTGFHIDIHADTETGDDAIASRVSTPDDV 338
Query: 363 MQA 365
+
Sbjct: 339 TRR 341
>gi|189501596|ref|YP_001957313.1| transcription termination factor NusA [Candidatus Amoebophilus
asiaticus 5a2]
gi|189497037|gb|ACE05584.1| transcription termination factor NusA [Candidatus Amoebophilus
asiaticus 5a2]
Length = 411
Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats.
Identities = 127/415 (30%), Positives = 230/415 (55%), Gaps = 13/415 (3%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
L++ A K++DR V+ ++ + + +GT + + IN + GD+ ++R EV
Sbjct: 6 LIETFAEFARSKNVDRPTVIRILEEVFKAMIHKKFGTDDNFDIIINLDQGDLQIWRFREV 65
Query: 69 VEEVENY---TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
V++ +ISL A+ + +IG VS+ + FGR A+ +A+Q +IQKV++
Sbjct: 66 VDDNSEDIWDHDKISLSEAKKIEEDFNIGEEVSEEISVDSFGRRAITAARQTLIQKVKDL 125
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKS 184
E+D YL++ +GE+I+ V ++ VI VD + + + E I ++ + G+ +++
Sbjct: 126 EKDALYLKYTQLIGEMITVEVHQILPQEVILVDEERKELFLPKSEQIFKDIFKKGEYIRA 185
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
++ + ++ P+V+LSRT P F+ +LF EVPEI++GI+ +K V R+PG RAK+AV S
Sbjct: 186 VVHRIDLQKSTPKVILSRTSPIFLERLFESEVPEIFDGIITIKKVVREPGERAKVAVESL 245
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D IDPVGACVG++GSR+ ++V EL++E ID++ ++ + ++ AL PA ++ + + D
Sbjct: 246 DDRIDPVGACVGIKGSRIHSIVRELQNENIDVINYTDNLELYISRALSPAKISSIQMKGD 305
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
R+ V + +Q+SLAIG+ GQN++LAS+L ID+ E +
Sbjct: 306 --RVAVYLKPDQVSLAIGKGGQNIKLASRLVDREIDVYREVDSIGED-------VNLEEF 356
Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419
A ++ I L G + + + ++ ++ET E+ ++ E
Sbjct: 357 ADEIEPWIIDELKKTGLDSAKSVLAIPKEDLERRTDLEKETIDELYRVLKQEFEE 411
>gi|88855366|ref|ZP_01130030.1| transcription elongation factor NusA [marine actinobacterium
PHSC20C1]
gi|88815273|gb|EAR25131.1| transcription elongation factor NusA [marine actinobacterium
PHSC20C1]
Length = 333
Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats.
Identities = 119/351 (33%), Positives = 194/351 (55%), Gaps = 32/351 (9%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGT--------MSDIRVEINPETGDIS 61
L + + E+ I + ++ ++ +I A RV ++ +TG +S
Sbjct: 5 LSVLRMMEREREIPFEELVQIIEQAIMSAYLKHVEAPEGKAAETAPTARVVLDRKTGHVS 64
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
++ V E ++ +G P DFGR+A +AKQVI Q+
Sbjct: 65 VW-----VPEYDDE--------------GAIVGEA---EDSPSDFGRIAAFAAKQVINQR 102
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGD 180
+R+ D+ EFK + G+I++G +++ +I +DLG + ++ +E + E + G
Sbjct: 103 LRDIGDDKVLGEFKGREGDIVAGVIQQGPNPRMIHIDLGTVEAIMPPEEQVPSEEYKHGS 162
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
R++ Y+ V + +GPQ+ +SRTHP + KLF +EVPEI +GIV++ +V+R+ G R K+A
Sbjct: 163 RLRVYVTAVNKGDKGPQITVSRTHPSLVRKLFALEVPEIASGIVEITSVAREAGHRTKMA 222
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV-TKV 299
V +++ ++ G+C+G G RV+AV EL +EKIDIV +S + A FV NAL PA V +
Sbjct: 223 VRATEPGVNAKGSCIGELGQRVRAVTAELNNEKIDIVDYSENLAVFVANALSPAKVSSSF 282
Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350
V+DE + +VP QLSLAIG+ GQN RLA++LTG IDI + +
Sbjct: 283 VIDETTKAVRALVPDYQLSLAIGKEGQNARLAAKLTGARIDIQPDSILDED 333
>gi|325067076|ref|ZP_08125749.1| NusA antitermination factor [Actinomyces oris K20]
gi|326771738|ref|ZP_08231023.1| transcription termination factor NusA [Actinomyces viscosus C505]
gi|326637871|gb|EGE38772.1| transcription termination factor NusA [Actinomyces viscosus C505]
Length = 346
Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats.
Identities = 141/359 (39%), Positives = 197/359 (54%), Gaps = 28/359 (7%)
Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64
N EL AD + ID D +L + D+I A + G + VEI+ TG +S+
Sbjct: 4 NMPELRGAADEL----GIDLDNLLPAIEDAILGAYSKVPGAIRGAHVEIDRRTGHMSVLA 59
Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
V+E + T G D P DFGR+A +A+ VI+Q++++
Sbjct: 60 PE--VDEEDQPT-----------------GEYFDD--TPDDFGRIAQATARSVIVQRIQD 98
Query: 125 AERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRV 182
FKDK GE+ISGTV++ + V V L +G++ E + E R GDRV
Sbjct: 99 RRDFEVLGAFKDKTGELISGTVEQGRDPRIVYVRLDEEHEGIMPPHEQVPGERYRHGDRV 158
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
++Y+ DV R RG Q++LSRTHP + KLF EVPE+ +G V++ +V+R+ G R K+AV
Sbjct: 159 RAYVTDVSRGTRGAQIILSRTHPGLVRKLFEREVPELSSGDVEIVSVAREAGHRTKMAVR 218
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VL 301
S ++ GAC+G G RV+AV+TEL EKIDIV +S D A F+ NAL PA V V V+
Sbjct: 219 SKVRGVNAKGACIGPMGQRVRAVMTELGGEKIDIVDYSEDPARFIANALSPARVAAVGVI 278
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
D + IVP QLSLAIG+ GQN RLA++LTGW IDI + E ++
Sbjct: 279 DAEERTARAIVPDFQLSLAIGKEGQNARLAARLTGWKIDIHADAESGEITPGQGSQSDD 337
>gi|23466164|ref|NP_696767.1| transcription elongation factor NusA [Bifidobacterium longum
NCC2705]
gi|317482183|ref|ZP_07941206.1| transcription termination factor NusA [Bifidobacterium sp.
12_1_47BFAA]
gi|23326902|gb|AAN25403.1| N utilization substance homolog [Bifidobacterium longum NCC2705]
gi|316916417|gb|EFV37816.1| transcription termination factor NusA [Bifidobacterium sp.
12_1_47BFAA]
Length = 355
Score = 268 bits (684), Expect = 2e-69, Method: Composition-based stats.
Identities = 117/330 (35%), Positives = 192/330 (58%), Gaps = 17/330 (5%)
Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV-VEEVEN 74
+A E+ ID + +A++++ A RVE++ +G+ +++ E+ VE E+
Sbjct: 11 LAAEQGIDPGTLDDALAEALRLAYLKTPHAARHARVELDERSGNFTVWAADEIPVEPTED 70
Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134
P +G D P DFGR+A +A+QVI Q R AE ++ + F
Sbjct: 71 NPY-----------PVPKLGEEYDD--TPRDFGRLAAATARQVITQLFRRAEDEKVFGAF 117
Query: 135 KDKVGEIISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192
+ G++I+G +++ + NV V +G+ + ++ R E + E R G+R++ Y+ +V R
Sbjct: 118 SGQKGKLITGIIQQDASDPSNVHVAMGDVEAILPRREQVPGERYRHGERIRVYVVNVARG 177
Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252
+GP++++SR+HP+ + KLF EVPE+ +G V + A++R+ G+R K+AV ++ ++P G
Sbjct: 178 IKGPEIVVSRSHPELVRKLFEREVPELVSGAVSIMAIAREAGARTKIAVKANTDGVNPKG 237
Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVI 311
A +G G+RV+AV+ L EKIDIV +S D A FV AL PA+ T V + E
Sbjct: 238 ALIGPGGARVRAVMENLGPEKIDIVDYSDDPAKFVAAALSPAVATGVQVISEKNKTAIAF 297
Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
+ +QLSLAIG+ GQN RLA++LTGW I I
Sbjct: 298 IHDDQLSLAIGKEGQNARLAAKLTGWKIGI 327
>gi|261749099|ref|YP_003256784.1| transcription elongation factor NusA [Blattabacterium sp.
(Periplaneta americana) str. BPLAN]
gi|261497191|gb|ACX83641.1| transcription elongation factor NusA [Blattabacterium sp.
(Periplaneta americana) str. BPLAN]
Length = 419
Score = 268 bits (684), Expect = 2e-69, Method: Composition-based stats.
Identities = 120/420 (28%), Positives = 225/420 (53%), Gaps = 11/420 (2%)
Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
+ L+ EK+IDR +++++ +SI+ R Y + + + +NP+ GD+ ++
Sbjct: 1 MDNEALIDSFSVFKDEKNIDRASLMAILEESIRCVLRKKYDSSKNYDIIVNPDQGDLEIW 60
Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
R VV++ V++ +I L AR + +IG V++ + GR A+ S +Q ++ K
Sbjct: 61 RNRIVVQDGTVKDVNKEIELSTARKIEIDFEIGEEVTEKVELKSLGRRAILSLRQNLLSK 120
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGD 180
+ E + Y +FK+K+GEII+ V + +I+ D ++ V+ + E I + R GD
Sbjct: 121 INEYDNTNIYKKFKNKIGEIINVEVYHILPKQIIMRDEEQNEMVLPKQEQIPNDFFRKGD 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
V++ + V + P +L+R F+ +LF +E+PE+ G++ VK V+R PG +AK++
Sbjct: 181 PVRALVKRVDWKDNKPLAILTRKDDSFLEELFKLEIPEVSEGLITVKKVARIPGEKAKVS 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S D IDP+GACVGM+GSR+ +V EL++E ID++ ++ + ++ AL PA V+ +
Sbjct: 241 VDSYDDRIDPIGACVGMKGSRIHPIVRELKNENIDVINYTTNIQLYITRALSPAKVSMME 300
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
++E+ + V V E++S AIGR GQN+RLASQLTG+ I I + + +
Sbjct: 301 VNEEHKYVNVYVKLEEISKAIGRGGQNIRLASQLTGYKIHIFRDFPYEDDVELTEFSD-- 358
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
++ + G + + + ++++ +E+ ++ ++ E
Sbjct: 359 ------EIEPEVLERFHKVGLTTAKSVLNYRNNDLSKRTNLEEKIINKVVSILKKEFEEE 412
>gi|239917227|ref|YP_002956785.1| transcription termination factor NusA [Micrococcus luteus NCTC
2665]
gi|239838434|gb|ACS30231.1| transcription termination factor NusA [Micrococcus luteus NCTC
2665]
Length = 328
Score = 268 bits (684), Expect = 2e-69, Method: Composition-based stats.
Identities = 121/337 (35%), Positives = 186/337 (55%), Gaps = 24/337 (7%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ + E+ I D ++ + ++ A G + RVEI+ TG ++ +
Sbjct: 5 MSALRMLEAEREIPMDRLIPTIEQALLMAYHRTPGALKRARVEIDRATGHVTAWAT---- 60
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
E++ I P FGRVA +A+QV+IQ++RE + D+
Sbjct: 61 -ELDEDDTPIG-----------------EFDDTPNGFGRVAASTARQVMIQRMREEDDDK 102
Query: 130 QYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
EFKDK GE++SG +++ V V+LG + V+ E + E+ G R+++Y+
Sbjct: 103 VLGEFKDKEGELVSGVIQQGLNRHMVQVNLGTLEAVLPPPEQVPGEDYAHGRRIRAYVVS 162
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
R +GP V +SR+HP + KLF +EVPEI +G V++ A++R+ G R K+AV ++ +
Sbjct: 163 ATRGAKGPSVTVSRSHPGLVRKLFELEVPEIADGSVEITALAREAGHRTKMAVRATRPGV 222
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307
+ GA +G GSRV+AV+TEL DEKIDI+ D A + NAL PA V + D D
Sbjct: 223 NAKGASIGEMGSRVRAVMTELNDEKIDIIDHVDDPAAMIANALSPATTVSVEILDADQHS 282
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344
+VP+ QLSLAIG+ GQN RLA++LTGW IDI+ +
Sbjct: 283 ARAVVPQYQLSLAIGKEGQNARLAAKLTGWRIDIVGD 319
>gi|81300831|ref|YP_401039.1| transcription elongation factor NusA [Synechococcus elongatus PCC
7942]
gi|81169712|gb|ABB58052.1| NusA antitermination factor [Synechococcus elongatus PCC 7942]
Length = 441
Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats.
Identities = 131/371 (35%), Positives = 204/371 (54%), Gaps = 30/371 (8%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARS---------LYGTM--SDI 49
MV+ LE Q+ A++ +K + +V+ + +++ K + +I
Sbjct: 3 MVTLPGLE--QLIYAISEQKKLPANVIEEALKEALLKGYERYRRTQQMGEQFEEDYFDNI 60
Query: 50 RVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFG 107
VE++ E + +V +VEN QI+L ++ P G +V + P DFG
Sbjct: 61 DVELDVEQEGFRVLATKTIVNQVENPDHQIALADVQEVAPDAQAGEIVVLDVTPDKDDFG 120
Query: 108 RVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NS 161
R+A KQV+ QK+R+ +R EF+D ++ V R E +VI+ +
Sbjct: 121 RMAAIQTKQVLSQKLRDHQRKLIQEEFQDLEDPVLMAKVLRFERQSVILGVSSGLGRPEV 180
Query: 162 DGVIRRDETISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIY 220
+ + R E + +N R + ++ +V +RGPQ+++SR + +V LF EVPEI
Sbjct: 181 EAELPRREQLPNDNYRANATFRVFLKEVSEVPRRGPQLIVSRANAGLVVYLFENEVPEIQ 240
Query: 221 NGIVQVKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEK 273
+G+V++ AV+R+ G R K+AV + + +DPVGAC+G RGSR+Q VV ELR EK
Sbjct: 241 DGVVRIVAVAREANPPTRHVGPRTKIAVDTLEREVDPVGACIGARGSRIQVVVNELRGEK 300
Query: 274 IDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLAS 332
ID++ WSPD AT++ NAL PA V +V +D + V+V +QLSLAIG+ GQNVRLA+
Sbjct: 301 IDVIRWSPDPATYIANALSPARVQEVRLVDPEGRIAHVLVNDDQLSLAIGKEGQNVRLAA 360
Query: 333 QLTGWTIDIIT 343
+LTGW IDI
Sbjct: 361 RLTGWKIDIKD 371
>gi|269215361|ref|ZP_06159215.1| transcription termination factor NusA [Slackia exigua ATCC 700122]
gi|269131217|gb|EEZ62291.1| transcription termination factor NusA [Slackia exigua ATCC 700122]
Length = 395
Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats.
Identities = 131/370 (35%), Positives = 205/370 (55%), Gaps = 42/370 (11%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ A+A+E+ ID ++ + S+ K+ +++ + RV I+ TG I ++ L+ V
Sbjct: 1 MDALQALAHERKIDEFYLIERLEASLAKSYQNILDLEWEARVTIDRSTGRIYVYELVPVG 60
Query: 70 EEVENYTCQISLKVARDRDPSIDIG---GVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
E P + G + P + R A Q+AK VI VREA
Sbjct: 61 E------------------PDPETGEYADFEEKDVTPANVSRTAAQNAKSVIAAIVREAG 102
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIR----------RDETISREN 175
R Y EF+D+V +I+ GTV + I+ + + + ++E + E
Sbjct: 103 RQSIYEEFRDRVDDIVGGTVLQTTPDFTIIKIREGVEAELPHYDLKRFPDEQNEVPAGER 162
Query: 176 LRPGDRVKSYIYDVRREQRGPQ----------VLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225
R R+K+ I +VR + +++SRTHP + +LF +EVPEIY+G+V+
Sbjct: 163 YRHNQRIKTVIIEVRDPRSMEPRARGEQTRPSIVVSRTHPSLIRRLFEIEVPEIYDGVVE 222
Query: 226 VKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSAT 285
+K+++R+ G+R+K+AV S +S++DPVGACVG +GSRV+ VV ELR+E++D++ WS D A
Sbjct: 223 IKSIAREAGARSKVAVASRESNLDPVGACVGPKGSRVRMVVEELRNERVDVIQWSDDPAK 282
Query: 286 FVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345
+V NAL PA VT+V +DED V+VP +QLSLAIG+ GQN RLA++LTGW IDI +
Sbjct: 283 YVANALSPARVTRVTIDEDKQYATVVVPDDQLSLAIGKEGQNARLAARLTGWHIDIKSSS 342
Query: 346 EDSINRQKDF 355
+
Sbjct: 343 YAGQMVPETN 352
>gi|56752082|ref|YP_172783.1| transcription elongation factor NusA [Synechococcus elongatus PCC
6301]
gi|56687041|dbj|BAD80263.1| N utilization substance protein A [Synechococcus elongatus PCC
6301]
Length = 441
Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats.
Identities = 131/371 (35%), Positives = 204/371 (54%), Gaps = 30/371 (8%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARS---------LYGTM--SDI 49
MV+ LE Q+ A++ +K + +V+ + +++ K + +I
Sbjct: 3 MVTLPGLE--QLIYAISEQKKLPANVIEEALKEALLKGYERYRRTQQMGEQFEEDYFDNI 60
Query: 50 RVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFG 107
VE++ E + +V +VEN QI+L ++ P G +V + P DFG
Sbjct: 61 DVELDVEQEGFRVLATKTIVNQVENPDHQIALADVQEVAPDAQAGEIVVLDVTPDKDDFG 120
Query: 108 RVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NS 161
R+A KQV+ QK+R+ +R EF+D ++ V R E +VI+ +
Sbjct: 121 RMAAIQTKQVLSQKLRDHQRKLIQEEFQDLEDPVLMAKVLRFERQSVILGVSSGLGRPEV 180
Query: 162 DGVIRRDETISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIY 220
+ + R E + +N R + ++ +V +RGPQ+++SR + +V LF EVPEI
Sbjct: 181 EAELPRREQLPNDNYRANATFRVFLKEVSEEPRRGPQLIVSRANAGLVVYLFENEVPEIQ 240
Query: 221 NGIVQVKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEK 273
+G+V++ AV+R+ G R K+AV + + +DPVGAC+G RGSR+Q VV ELR EK
Sbjct: 241 DGVVRIVAVAREANPPTRHVGPRTKIAVDTLEREVDPVGACIGARGSRIQVVVNELRGEK 300
Query: 274 IDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLAS 332
ID++ WSPD AT++ NAL PA V +V +D + V+V +QLSLAIG+ GQNVRLA+
Sbjct: 301 IDVIRWSPDPATYIANALSPARVQEVRLVDPEGRIAHVLVNDDQLSLAIGKEGQNVRLAA 360
Query: 333 QLTGWTIDIIT 343
+LTGW IDI
Sbjct: 361 RLTGWKIDIKD 371
>gi|194476586|ref|YP_002048765.1| transcription elongation factor NusA [Paulinella chromatophora]
gi|171191593|gb|ACB42555.1| transcription elongation factor NusA [Paulinella chromatophora]
Length = 468
Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats.
Identities = 131/409 (32%), Positives = 200/409 (48%), Gaps = 32/409 (7%)
Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57
+ + ++ EK + VV S + +++ K + ++ V ++ E
Sbjct: 12 LIEDISEEKKLPPQVVESALREALLKGYERYRRTRYLGLIANPFEQDYFNNFDVALDLEE 71
Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPP--MDFGRVAVQSAK 115
+ +VEEVE+ QI+L R + G V + P DFGR+A K
Sbjct: 72 EGYRVLASKIIVEEVESEDHQIALSDVRQVTEDVHAGDTVVLDVTPAKEDFGRMAAAMTK 131
Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169
QV+ +K+RE +R EF D +++ V R E +VI+ + + + R +
Sbjct: 132 QVLSRKLREQQRRMIQEEFADLEDPVLTARVIRFERQSVILAVSSGLSRPEVEAELPRRD 191
Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228
+ +N R K ++ ++ +RGPQ+ +SR + +V LF EVPEI G V++ A
Sbjct: 192 QLPNDNYRANATFKVFLKEISEVPRRGPQLFVSRVNAGLVVYLFENEVPEIQEGSVRIVA 251
Query: 229 VSRDPGS-------RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281
V+R+ R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ WSP
Sbjct: 252 VAREANPPSRTVSPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRWSP 311
Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340
D A ++ N++ PA V + +D V+V +QLSLAIGR GQNVRLA++LTGW ID
Sbjct: 312 DPAQYISNSISPARVHNIRLIDPAGHHAHVLVTPDQLSLAIGREGQNVRLAARLTGWKID 371
Query: 341 IIT-EEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELA 388
I E DS + + + LVAE A
Sbjct: 372 IKDSETYDSAYEDATISNLIFKRDKEGTIQSEFESRLVAEQITRTRPDA 420
>gi|256827233|ref|YP_003151192.1| transcription termination factor NusA [Cryptobacterium curtum DSM
15641]
gi|256583376|gb|ACU94510.1| transcription termination factor NusA [Cryptobacterium curtum DSM
15641]
Length = 402
Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats.
Identities = 136/358 (37%), Positives = 209/358 (58%), Gaps = 42/358 (11%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
EL++ A+A+E+ ID ++ + S+ K+ +++ D RV I+ TG I ++ E
Sbjct: 5 ELIEALHALAHERKIDEFYLIERLEASLAKSYQNILDLEWDARVTIDRNTGKIYVY---E 61
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDP---LPPMDFGRVAVQSAKQVIIQKVRE 124
+V + E P + G + P D R+A Q+AK VI VRE
Sbjct: 62 LVPQGE---------------PDPETGEYTDFEERDVTPDDVSRIAAQNAKGVINAIVRE 106
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIR----------RDETISR 173
A R Y EF +VG++++GTV + I+ + + + R+E +
Sbjct: 107 AGRQSIYEEFSQRVGDLVTGTVLQGTPDFTIIKIRDGVEAELPHYDQKRFPDERNERPAN 166
Query: 174 ENLRPGDRVKSYIYDVRREQR----------GPQVLLSRTHPQFMVKLFHMEVPEIYNGI 223
E R R+K+ I +VR P +++SRTHP + +LF +EVPEIY+G+
Sbjct: 167 ERYRHNQRLKTLIIEVRNPNSEESRQRGEQARPSIVVSRTHPDLIRRLFEIEVPEIYDGV 226
Query: 224 VQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283
V++K+++R+PG+R+K+AV S ++ +DPVGACVG +GSRV+ VV ELR+E++D++ WS D+
Sbjct: 227 VEIKSIAREPGARSKVAVVSHENHLDPVGACVGPKGSRVRMVVEELRNERVDVIQWSDDA 286
Query: 284 ATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
AT+V NAL PA V+ V +DE+ VIVP +QLSLAIG+ GQN RLA++LTGW IDI
Sbjct: 287 ATYVRNALSPARVSHVDIDEETHYATVIVPDDQLSLAIGKEGQNARLAARLTGWHIDI 344
>gi|257126084|ref|YP_003164198.1| transcription elongation factor NusA [Leptotrichia buccalis
C-1013-b]
gi|257050023|gb|ACV39207.1| NusA antitermination factor [Leptotrichia buccalis C-1013-b]
Length = 414
Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats.
Identities = 129/380 (33%), Positives = 212/380 (55%), Gaps = 5/380 (1%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
M ++ L+ D + EK I ++ +L + ++ A + YG +++V IN +GD+
Sbjct: 1 MRGRDQKIFLEALDELEKEKGILKEELLETIETALLAAYKKNYGEKDNVKVTINRNSGDV 60
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
+F +VE VEN +ISL+ A +G ++ + F R A+Q+AKQ+++Q
Sbjct: 61 KVFSQRLIVENVENPDEEISLEDAISVKKRAKLGDILDLEINAESFKRNAIQNAKQIVVQ 120
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPG 179
KVRE E+ + +FK+ I+S V++ E GN+ +D+ + ++ E +N
Sbjct: 121 KVRECEKRNIFNKFKEIENSIVSANVRKTDEKGNLYIDINGLEAIVPFKELSPTDNFVQN 180
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
+RVK Y+ +V + + +SR + + L +EVPEI I+++K ++R+ GSRAK+
Sbjct: 181 ERVKIYVGNVEESTKFTKTFVSRKSEELLRGLLELEVPEIEEKIIEIKNIAREAGSRAKV 240
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV+S D ++D GAC+G G R+Q ++ ELR EKIDIV+W+ D FV NAL PA V V
Sbjct: 241 AVYSEDENLDVKGACIGRNGMRIQNIIDELRGEKIDIVLWNEDIREFVKNALNPAEVLLV 300
Query: 300 VL----DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355
+ +E+ +V+V + QLSLAIG++GQN RLA++L G IDI TE + +
Sbjct: 301 EIVEGEEENTKIAKVLVAENQLSLAIGKKGQNSRLAARLCGVKIDIHTEPFEIEQNDEYE 360
Query: 356 NERTQFFMQAINVDEIIAHL 375
E F ++ D +
Sbjct: 361 LEEETAFHNSVESDLEESEF 380
>gi|119485069|ref|ZP_01619454.1| transcription elongation factor NusA [Lyngbya sp. PCC 8106]
gi|119457297|gb|EAW38422.1| transcription elongation factor NusA [Lyngbya sp. PCC 8106]
Length = 409
Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats.
Identities = 130/384 (33%), Positives = 204/384 (53%), Gaps = 29/384 (7%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARS---------LYGTM--SDIRVEINPET 57
L + ++ E+++ + V + +++ K + + VE++ E
Sbjct: 9 LKDMIQNISQERNLPKQAVEEALREALLKGYERYRRTVQINTQFTEDYFDNFDVELDVEE 68
Query: 58 GDISLFRL-LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114
+ L +VEEV N QISL+ R+ P +G V+ + P DFGR+A
Sbjct: 69 EGFRVLAKNLTIVEEVTNQDHQISLQDVREVAPEAQLGDTVTLDVTPEQSDFGRMAAIQT 128
Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRD 168
KQV+ QK+R+ +R EFKD ++ V R E +VI+ + + + +
Sbjct: 129 KQVLAQKLRDQQRKMIQDEFKDLESSVLQARVLRFERQSVIMSVNSGFGHQEVEAELPKR 188
Query: 169 ETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227
E + +N R + Y+ V + QRGPQ+++SR +V LF EVPEI + +V++
Sbjct: 189 EQLPNDNYRANATFRVYLKRVSQGSQRGPQLIVSRADAGLVVYLFANEVPEIEDEVVRIV 248
Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280
AV+R+ G R K+AV + D +DPVGAC+G RGSR+Q VV ELR EKID++ WS
Sbjct: 249 AVAREANPPSTHVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWS 308
Query: 281 PDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
PD +T++ NAL PA V +V ++ + R ++VP++QLSLAIG+ GQNVRLA++LTGW I
Sbjct: 309 PDPSTYIANALSPARVDEVRLVNPEERRAHILVPEDQLSLAIGKEGQNVRLAARLTGWKI 368
Query: 340 DIITEEEDSINRQKDFNERTQFFM 363
DI + + +
Sbjct: 369 DIKDTAKYDAVAEDQKIAEQYNYQ 392
>gi|170782217|ref|YP_001710550.1| transcription elongation factor NusA [Clavibacter michiganensis
subsp. sepedonicus]
gi|169156786|emb|CAQ01949.1| transcription elongation protein NusA [Clavibacter michiganensis
subsp. sepedonicus]
Length = 335
Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats.
Identities = 119/353 (33%), Positives = 189/353 (53%), Gaps = 33/353 (9%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD---------IRVEINPETGDI 60
L + + E+ I + ++S++ +I A RV ++ ++G +
Sbjct: 5 LSVLRLMEREREIPFEELVSIIEQAILTAYLKHTDQADAKPVADGVPPARVHLDRKSGHV 64
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
S+ V E++ I P DFGR+A +A+QVI Q
Sbjct: 65 SVH-----VPELDEDGLVIG-----------------ESEDSPSDFGRIAAFAARQVINQ 102
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPG 179
++R+ DR EFK + G+I++G +++ +I VDLG + ++ +E + E G
Sbjct: 103 RLRDIGDDRILGEFKGREGDIVAGVIQQGPNPRMIHVDLGTIEAILPPEEQVPGEKYVHG 162
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
R++ Y+ V R +GPQ+ +SRTHP + KLF +EVPEI +G+V++ +++R+ G R K+
Sbjct: 163 SRLRVYVTSVSRGAKGPQITVSRTHPSLVRKLFALEVPEIASGLVEIVSLAREAGHRTKI 222
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI-VTK 298
AV +++ I+ GAC+G G RV+AV EL DEKIDIV +S FV NAL PA +
Sbjct: 223 AVRATEPGINAKGACIGELGQRVRAVTAELNDEKIDIVDYSESLPVFVGNALSPARVTSS 282
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351
V+D+ + +VP QLSLAIG+ GQN RLA++LTG IDI + +
Sbjct: 283 FVIDQATKAVRALVPDYQLSLAIGKEGQNARLAAKLTGAKIDIQPDSILEGDD 335
>gi|17231321|ref|NP_487869.1| transcription elongation factor NusA [Nostoc sp. PCC 7120]
gi|17132963|dbj|BAB75528.1| transcription termination factor [Nostoc sp. PCC 7120]
Length = 425
Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats.
Identities = 139/412 (33%), Positives = 216/412 (52%), Gaps = 38/412 (9%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAA----------RSLYGTM--SDIRVEINPE 56
L + ++++ E+++ R V + + +++ K R + + VE++ +
Sbjct: 9 LKDLIESISRERNLPRLAVQAAIREALLKGYERYRRAQNIERKQFDEDYFDNFEVELDID 68
Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114
+ +VEEV N QISL + P +G V + P +FGR+A
Sbjct: 69 EEGFRVLSTKSIVEEVNNSDHQISLDEVQQVAPEAQLGDSVVLDVTPDQGEFGRMAAMQT 128
Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS------DGVIRRD 168
KQV+ QK+R+ +R EF+D G ++ V R E +VI+ + ++ + + +
Sbjct: 129 KQVLAQKLRDQQRQMVQEEFQDLEGTVLQARVLRFERQSVILAVSSTFGQPEVEAELPKR 188
Query: 169 ETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227
E + +N R K Y+ V + +QRGPQ+L+SR +V LF EVPEI + +V++
Sbjct: 189 EQLPNDNYRANATFKVYLKKVSQGQQRGPQLLVSRADAGLVVYLFANEVPEIEDEVVRIV 248
Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280
AV+R+ G R K+AV + D +DPVGAC+G RGSR+Q VV ELR EKID++ WS
Sbjct: 249 AVAREANPPSRYVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWS 308
Query: 281 PDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
PD AT++ NAL PA V +V L D + + V+V ++QLSLAIG+ GQNVRLA++LTGW I
Sbjct: 309 PDPATYIANALSPARVDEVRLMDPETRQTHVLVAEDQLSLAIGKEGQNVRLAARLTGWKI 368
Query: 340 DIITEEEDSI---------NRQKDFNERTQFFMQAINVDEIIAHLLVAEGFA 382
DI + + R K E ++ +E L E F
Sbjct: 369 DIKDKAKYDQVAEDAKFVAARAKYQLEEDDIESDELDYEENQQGELEDESFD 420
>gi|308176799|ref|YP_003916205.1| transcription elongation protein NusA [Arthrobacter arilaitensis
Re117]
gi|307744262|emb|CBT75234.1| transcription elongation protein NusA [Arthrobacter arilaitensis
Re117]
Length = 327
Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats.
Identities = 119/344 (34%), Positives = 188/344 (54%), Gaps = 24/344 (6%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
L + ++ I DV++ + ++ A G M R I G +++ V
Sbjct: 5 LNALRILEKDRDIPMDVLIPTIESALLLAYNKTEGAMPGARAHIERSNGHVAIL-----V 59
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
E+ + + +G P FGR+A +A+QVI+Q++REAE +
Sbjct: 60 ED--------------RDNAGVLLGEF---DDTPHGFGRIAASTARQVIMQRLREAEDAQ 102
Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
E+ +VG +ISG +++ V V +G+ + ++ E E + G+R+++Y+
Sbjct: 103 VVGEYAARVGTLISGVIQQGYSSHMVQVKIGDLEALLPPVEQSPGEKYQHGNRLRAYVVS 162
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
R +GP V LSR+HP + LF MEVPEI +G V V+A++R+ G R K+AV ++ + +
Sbjct: 163 AERGNKGPAVTLSRSHPNLVRLLFEMEVPEIADGTVAVEALAREAGHRTKIAVHATKAGV 222
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307
+ GAC+G G+RV+AV+ EL DEKIDIV ++ D A F+ AL P+ V V + D + R
Sbjct: 223 NAKGACIGEMGTRVRAVMNELNDEKIDIVDYNEDPAKFIAAALSPSKVISVEILDAEERR 282
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351
V+VP QLSLAIG+ GQN RLA++LTGW IDI+ +
Sbjct: 283 ARVVVPDSQLSLAIGKEGQNARLAAKLTGWRIDILAASGGKEPQ 326
>gi|329947836|ref|ZP_08294768.1| transcription termination factor NusA [Actinomyces sp. oral taxon
170 str. F0386]
gi|328523460|gb|EGF50558.1| transcription termination factor NusA [Actinomyces sp. oral taxon
170 str. F0386]
Length = 346
Score = 266 bits (679), Expect = 8e-69, Method: Composition-based stats.
Identities = 142/359 (39%), Positives = 197/359 (54%), Gaps = 28/359 (7%)
Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64
N EL AD + ID D +L + D+I A + G + VEI+ TG +S+
Sbjct: 4 NMPELRGAADEL----GIDLDNLLPAIEDAILGAYSKVPGAIRGAHVEIDRRTGHMSVLA 59
Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
V+E + T G D P DFGR+A +A+ VI+Q++++
Sbjct: 60 PE--VDEDDQPT-----------------GEYFDD--TPDDFGRIAQATARSVIVQRIQD 98
Query: 125 AERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRV 182
FKDK GE+ISGTV++ + V V L +G++ E + E+ R GDRV
Sbjct: 99 RRDFEVLGAFKDKTGELISGTVEQGRDPRIVYVRLDEEHEGIMPPHEQVPGESYRHGDRV 158
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
++Y+ DV R RG Q++LSRTHP + KLF EVPEI +G V++ +V+R+ G R K+AV
Sbjct: 159 RAYVTDVSRGTRGAQIVLSRTHPGLVRKLFEREVPEISSGDVEIVSVAREAGHRTKMAVR 218
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VL 301
S ++ GAC+G G RV+AV+TEL EKIDIV S D A F+ NAL PA V V V+
Sbjct: 219 SKVRGVNAKGACIGPMGQRVRAVMTELGGEKIDIVDHSEDPARFIANALSPARVAAVGVI 278
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
D + IVP QLSLAIG+ GQN RLA++LTGW IDI + E ++
Sbjct: 279 DAEERTARAIVPDFQLSLAIGKEGQNARLAARLTGWKIDIHADAESGEITPGQGSQSDD 337
>gi|291457236|ref|ZP_06596626.1| transcription termination factor NusA [Bifidobacterium breve DSM
20213]
gi|291381071|gb|EFE88589.1| transcription termination factor NusA [Bifidobacterium breve DSM
20213]
Length = 351
Score = 266 bits (679), Expect = 1e-68, Method: Composition-based stats.
Identities = 115/330 (34%), Positives = 192/330 (58%), Gaps = 17/330 (5%)
Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV-VEEVEN 74
+A E+ ID + + +A++++ A RVE++ G +++ ++ VE E+
Sbjct: 11 LAAEQGIDPETLDDALAEALRLAYLKTPHAAKHARVELDERAGSFTVWAADDIPVEPTED 70
Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134
P+ ++G D P DFGR+A +A+QVI Q R+ E ++ + F
Sbjct: 71 DPH-----------PAPELGEEYDD--TPHDFGRLAAATARQVITQLFRKVEDEKVFGAF 117
Query: 135 KDKVGEIISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192
+ G++++G +++ + NV V +G + ++ R E + E R G+R++ Y+ +V R
Sbjct: 118 SGQKGKLVTGIIQQDASDPTNVHVAMGEVEAILPRREQVPGERYRHGERIRVYVVNVARG 177
Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252
+GP++++SR+HP+ + KLF EVPE+ +G V + A++R+ G+R KLAV ++ ++P G
Sbjct: 178 IKGPEIVVSRSHPELVRKLFEREVPELVSGAVSIMAIAREAGARTKLAVKANTDGVNPKG 237
Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVI 311
A +G G+RV+AV+ L EKIDIV +S D A FV AL PA+ T V + E
Sbjct: 238 ALIGPSGARVRAVMENLGPEKIDIVDYSDDPAKFVAAALSPAVATGVQVISEKNKTAIAF 297
Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
+ +QLSLAIG+ GQN RLA++LTGW I I
Sbjct: 298 IHDDQLSLAIGKEGQNARLAAKLTGWKIGI 327
>gi|86133947|ref|ZP_01052529.1| transcription elongation protein NusA [Polaribacter sp. MED152]
gi|85820810|gb|EAQ41957.1| transcription elongation protein NusA [Polaribacter sp. MED152]
Length = 418
Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats.
Identities = 133/426 (31%), Positives = 232/426 (54%), Gaps = 21/426 (4%)
Query: 7 LELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
+E + + D+ + KSIDR ++S++ + + A + +G+ + + INP+ GD+ ++
Sbjct: 1 MENIALIDSFSEFKDNKSIDRVTLMSILEEVFRAALKRKFGSDDNFDIIINPDKGDLEIW 60
Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
R VV + E+ +I L AR +P +IG VS+ + +D GR A+ + +Q +I K
Sbjct: 61 RNRVVVADGFSEDDNEEIELSEARKIEPDFEIGEDVSEEVKLIDLGRRAILALRQNLISK 120
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGD 180
+ E + + +FKD GE+ S V + + +I+ D ++ V+ + E I + R GD
Sbjct: 121 IYEHDSTNIFKQFKDLEGELFSAEVHHIRHNAIILLDDEGNEIVLPKSEQIRSDFFRKGD 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
V+ I V P ++LSRT P F+ KLF E+PE+++G++ V+ V+R PG +AK+A
Sbjct: 181 NVRGVIKTVELRGNKPAIILSRTSPAFLNKLFEQEIPEVFDGLITVEGVARIPGEKAKVA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S D IDPVGACVG++GSR+ +V EL +E ID++ ++ + F+ AL PA VT +
Sbjct: 241 VDSYDDRIDPVGACVGVKGSRIHGIVRELGNENIDVINYTKNEQLFISRALSPAKVTSME 300
Query: 301 L--DEDVG-----RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353
+ E+ R+ V++ E++S AIGR G N+RLAS+LTG+ ID+ E + + +
Sbjct: 301 ITMYEEEKNGKKGRVSVLLKPEEVSKAIGRGGVNIRLASELTGYEIDVQREGLEEEDVEL 360
Query: 354 DFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413
+++ + G + ++E+ +EET +++Q
Sbjct: 361 TEFID--------EIEDWVITEFKKIGLDTARSVLETSVAELVKRTDLEEETIIDVQRIL 412
Query: 414 REYLEG 419
+E E
Sbjct: 413 KEEFED 418
>gi|317057642|ref|YP_004106109.1| NusA antitermination factor [Ruminococcus albus 7]
gi|315449911|gb|ADU23475.1| NusA antitermination factor [Ruminococcus albus 7]
Length = 372
Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats.
Identities = 137/370 (37%), Positives = 205/370 (55%), Gaps = 21/370 (5%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+ + E ID+DV++ + + I KA + IRV+I P TG + + L
Sbjct: 2 NEQFFNALADLVSENEIDKDVLIEKIREGIIKAIKKENPESEHIRVDIEPATGKLEMCIL 61
Query: 66 LEV--VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
EV V V++ +I + A+ DP I +G V P+ P GRVA Q AKQ I ++
Sbjct: 62 KEVMKVMFVDDPANEIYIGEAQTYDPDIKVGDWVEIPVNPAKIGRVAAQFAKQSIKHDIK 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY--GNVIVDLGNSDGVIRRDETISRENLRPGDR 181
+ ER++ ++KDK EI++ TV++VE GN ++ + ++ R E I E L+ GD+
Sbjct: 122 DFERNKLIEQYKDKEHEIVTATVQKVEPATGNAVITIDKNEHYFYRSEQIPGEVLKEGDK 181
Query: 182 VKSYIYDVRREQRGPQ-VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
+K YI + ++ V LSRTH + +LF +EVPEI +G V++K++SR G R+K+A
Sbjct: 182 IKVYIVSLGGGEKRQPVVKLSRTHKDLVKRLFELEVPEIADGTVEIKSISRTEGVRSKIA 241
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V+S D ++D VGAC+G + SR+ AVV EL+ EKID++ W D A F+ AL PA V V
Sbjct: 242 VWSKDKNVDAVGACIGPKKSRISAVVQELKGEKIDVINWVEDEAEFIAKALAPAEVLSVE 301
Query: 301 LDEDV----------------GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344
L E + VIVP Q SLAIG +GQN +LA+ LTG+ IDI+ E
Sbjct: 302 LLEPEVRIEHKGEEKEFERVIKKCRVIVPNSQFSLAIGNKGQNAKLAAGLTGYKIDIVPE 361
Query: 345 EEDSINRQKD 354
++
Sbjct: 362 NAPESAETEE 371
>gi|118462823|ref|YP_882872.1| transcription elongation factor NusA [Mycobacterium avium 104]
gi|118164110|gb|ABK65007.1| transcription termination factor NusA [Mycobacterium avium 104]
Length = 351
Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats.
Identities = 130/359 (36%), Positives = 197/359 (54%), Gaps = 31/359 (8%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ A+ ++ I + +L + ++ A R G +D R+EI+ +TG + +
Sbjct: 5 MAALHAIEVDRGISVNELLETIKSALLTAYRHTEGHQNDARIEIDRKTGVVKV------- 57
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
+AR+ D ++ D P FGR+A +A+QV++Q+ R+AE +R
Sbjct: 58 -------------IARETDEDGNVISEWDD--TPEGFGRIAATTARQVMLQRFRDAENER 102
Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDR 181
Y EF + GEI++G ++R N V+V +G S+GVI E + E+ G+R
Sbjct: 103 TYGEFSTREGEIVAGVIQRDSRANARGLVVVRMGTETKASEGVIPAAEQVPGESYEHGNR 162
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V+ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV
Sbjct: 163 VRCYVIGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV 222
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV- 300
S+ ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V
Sbjct: 223 KSNLPGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSI 282
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
+D+ V+VP QLSLAIG+ GQN RLA++LTGW IDI + +
Sbjct: 283 IDQAARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDSPGGAGGHSESRPEH 341
>gi|41409007|ref|NP_961843.1| transcription elongation factor NusA [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41397366|gb|AAS05226.1| NusA [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 351
Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats.
Identities = 130/359 (36%), Positives = 197/359 (54%), Gaps = 31/359 (8%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ A+ ++ I + +L + ++ A R G +D R+EI+ +TG + +
Sbjct: 5 MAALHAIEVDRGISVNELLETIKSALLTAYRHTEGHQNDARIEIDRKTGVVKV------- 57
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
+AR+ D ++ D P FGR+A +A+QV++Q+ R+AE +R
Sbjct: 58 -------------IARETDEDGNVISEWDD--TPEGFGRIAATTARQVMLQRFRDAENER 102
Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDR 181
Y EF + GEI++G ++R N V+V +G S+GVI E + E+ G+R
Sbjct: 103 TYGEFSTREGEIVAGVIQRDSRANARGLVVVRMGTETKASEGVIPAAEQVPGESYEHGNR 162
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
V+ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV
Sbjct: 163 VRCYVIGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV 222
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV- 300
S+ ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V
Sbjct: 223 KSNLPGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSI 282
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
+D+ V+VP QLSLAIG+ GQN RLA++LTGW IDI + +
Sbjct: 283 IDQAARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDSPGGAGGHSESRPEH 341
>gi|261416680|ref|YP_003250363.1| NusA antitermination factor [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261373136|gb|ACX75881.1| NusA antitermination factor [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302327396|gb|ADL26597.1| N utilization substance protein A [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 407
Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats.
Identities = 144/381 (37%), Positives = 210/381 (55%), Gaps = 16/381 (4%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
M + ++ LL + V +KS+D V+L + ++ AAR I V+I+ ET ++
Sbjct: 1 MKNEPKVNLLDVLKEVVEDKSVDDSVILDALKKALISAARKYLHIEKKINVDIDMETNEV 60
Query: 61 SLFRLLEVVEEVENYTCQIS-------------LKVARDRDPSIDIGGVVSDPLPPMDFG 107
+F +EVV++ +Y ++ + ARD + G + LP FG
Sbjct: 61 HVFLNVEVVDDYPDYDPNMTAEEVAEMDEGYMLVDEARDFNEDAQAGDSLYMELPTSSFG 120
Query: 108 RVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIR 166
R A+Q+AKQ++ Q +R AE R ++ ++G II+GTV R+E NVIVDLG + +
Sbjct: 121 RQAIQTAKQLLTQHIRSAECQRIMDIYRSRIGTIINGTVLRLEQRNVIVDLGNKIEAELP 180
Query: 167 RDETISRENLRPGDRVKSYIYDVRREQRG-PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225
E I E L G VK+ I V + QV+LSR++ F+ L EVPEIY G V+
Sbjct: 181 AREQIPHERLTQGASVKAVIARVEESTKSGAQVILSRSNADFLKALLRQEVPEIYEGTVE 240
Query: 226 VKAVSRDP-GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSA 284
+KAV+RD RAK+AV+S D IDPVGACVGM+G+RVQ +V EL +E+IDIV W +
Sbjct: 241 IKAVARDSKNRRAKIAVYSRDEKIDPVGACVGMKGARVQTIVRELGNERIDIVHWDENFD 300
Query: 285 TFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344
FV +L PA V K+ D RI +IV E L+ AIG+ GQNV LA +L +D+ E
Sbjct: 301 VFVQRSLAPASVLKMFPVPDTDRIVIIVDDENLAQAIGKGGQNVELAGRLVDRKLDVHGE 360
Query: 345 EEDSINRQKDFNERTQFFMQA 365
+E S ++ N +
Sbjct: 361 QEWSQMDEEAKNNILAPNYED 381
>gi|119511041|ref|ZP_01630161.1| transcription elongation factor NusA [Nodularia spumigena CCY9414]
gi|119464292|gb|EAW45209.1| transcription elongation factor NusA [Nodularia spumigena CCY9414]
Length = 423
Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats.
Identities = 137/415 (33%), Positives = 218/415 (52%), Gaps = 29/415 (6%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAA----------RSLYGTM--SDIRVEINPE 56
L ++ ++++ E+++ R V + + +++ K + + + VE++ E
Sbjct: 7 LKELIESISRERNLPRLAVQTAIREALLKGYERYRRAQNLEKRQFDEEYFDNFEVELDIE 66
Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114
+ +VE V+N QISL+ + P +G V + P +FGR+A
Sbjct: 67 GEGFRVLSTKSIVEAVDNTDHQISLEEVQQVAPEAQLGDSVVLDVTPDQGEFGRMAAMQT 126
Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRD 168
KQV+ QK+R+ +R EF+D G ++ V R E +VI+ + + + +
Sbjct: 127 KQVLAQKLRDQQRQMVQEEFQDLEGTVLQARVLRFERQSVILAVASGFGQPEVEAELPKR 186
Query: 169 ETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227
E + +N R K Y+ V + +QRGPQ+L+SR +V LF EVPEI + +V++
Sbjct: 187 EQLPNDNYRANATFKVYLKKVSQGQQRGPQLLVSRADAGLVVYLFANEVPEIEDEVVRIV 246
Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280
AV+R+ G R K+AV + D +DPVGAC+G RGSR+Q VV ELR EKID++ WS
Sbjct: 247 AVAREANPPSRYVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWS 306
Query: 281 PDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
PD +T++ NAL PA V +V L D + + V+V ++QLSLAIG+ GQNVRLA++LTGW I
Sbjct: 307 PDPSTYIANALSPARVDEVRLMDPETRQTHVLVAEDQLSLAIGKEGQNVRLAARLTGWKI 366
Query: 340 DIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISE 394
DI + + + + Q D + L EE ++SE
Sbjct: 367 DIKDKAKYDYAGEDTKFAAARAKYQPEEDDLELEELDYENQEQLEEEDESFEMSE 421
>gi|319951028|ref|ZP_08024892.1| transcription elongation factor NusA [Dietzia cinnamea P4]
gi|319435308|gb|EFV90564.1| transcription elongation factor NusA [Dietzia cinnamea P4]
Length = 328
Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats.
Identities = 124/346 (35%), Positives = 191/346 (55%), Gaps = 31/346 (8%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ + ++ E+ I D ++ + +++ A + G R+ ++ + G +++
Sbjct: 5 MAALNMLSLEREIPLDDLVQTLENALLTAYKRTDGAHRVARIALDRKAGTVAVLA----- 59
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
EV+ +I + P DFGRVA +A+Q+I+Q++REAE DR
Sbjct: 60 AEVDEDGNRIG-----------------EFDVTPSDFGRVAAATARQIILQRLREAETDR 102
Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETISRENLRPGDR 181
Y + + GE++SG ++ N V+V +G ++G I E + E+ R GDR
Sbjct: 103 IYGDLVTREGEVVSGVIQSDSRANARGIVVVHIGPENGGTEGTIAPAEQVPGESYRHGDR 162
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K ++ V + G V LSRTHP + LF +EVPEI +G V++ A++R+ G R K+AV
Sbjct: 163 IKCHVVGVHKGPHGASVSLSRTHPDLVRGLFALEVPEIGDGSVRIAAIAREAGHRTKIAV 222
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+ S ++ GAC+G G+RV+AV+ EL EKIDIV + D FV NAL PA V V +
Sbjct: 223 ESTVSGLNAKGACIGPNGARVRAVMAELNGEKIDIVDYDDDPTVFVGNALSPAKVISVTV 282
Query: 302 -DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346
DE V+VP QLSLAIG+ GQN RLA +LT W IDI ++ E
Sbjct: 283 ADEQARAARVVVPDYQLSLAIGKEGQNARLAHRLTQWRIDIHSDAE 328
>gi|37523058|ref|NP_926435.1| transcription elongation factor NusA [Gloeobacter violaceus PCC
7421]
gi|35214061|dbj|BAC91430.1| glr3489 [Gloeobacter violaceus PCC 7421]
Length = 383
Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats.
Identities = 132/367 (35%), Positives = 201/367 (54%), Gaps = 29/367 (7%)
Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAA---RSLYGTMS---------DIRVEINPETGDI 60
+ ++ ++++ + V + ++++K R Y + VE++ +
Sbjct: 13 IETISRQRNLPKHAVKEALIEALKKGYERFRKTYRDPRENSEEMAFDNFIVELDTDREGF 72
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAKQVI 118
+ +VE V + +I+L R+ P + GG V + P DFGR+A KQV+
Sbjct: 73 RVLATKTIVETVSDTDQEIALIEVREVAPDAEPGGTVVVDVTPEKGDFGRMAAIQTKQVL 132
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETIS 172
QK+R+ +R EF++ G ++ V R E +VI + + + ++E +
Sbjct: 133 SQKLRDQQRKLIQEEFRELEGTVLQARVMRFEGRSVICAVSSGFGQNEVEAELPKNEQLP 192
Query: 173 RENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSR 231
E R G K ++ V +RGPQ+L+SR +V LF EVPEI + IV++ AV+R
Sbjct: 193 NEPYRIGSAFKVFLRKVWEGSRRGPQLLVSRADAGLVVYLFANEVPEIEDEIVRIVAVAR 252
Query: 232 DP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSA 284
+ G R K+AV + + +DPVGAC+G RGSR+QAVV ELR EKID++ WSPD A
Sbjct: 253 EANPPSRTVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGEKIDVIRWSPDPA 312
Query: 285 TFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343
T++ NAL PA V +V +D D + VIVP +QLSLAIG+ GQNVRLA++LTGW IDI
Sbjct: 313 TYISNALSPARVIQVRLVDPDARQAHVIVPDDQLSLAIGKEGQNVRLAARLTGWKIDIKK 372
Query: 344 EEEDSIN 350
E S
Sbjct: 373 SSEYSAE 379
>gi|269219599|ref|ZP_06163453.1| transcription termination factor NusA [Actinomyces sp. oral taxon
848 str. F0332]
gi|269210841|gb|EEZ77181.1| transcription termination factor NusA [Actinomyces sp. oral taxon
848 str. F0332]
Length = 330
Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats.
Identities = 131/339 (38%), Positives = 197/339 (58%), Gaps = 26/339 (7%)
Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV 72
V E I DV++ + D++ A + + G + RVE++ TG ++++
Sbjct: 8 LRIVESELGISVDVIVGAIEDALLHAYQRVPGAVRGARVEMDRNTGKVTVY--------- 58
Query: 73 ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYL 132
A + D ++ G D P DFGR+A +A+ +I Q++R+AE DR
Sbjct: 59 -----------APEVDEEGEVIGEFDD--TPGDFGRIATSTARSIIAQRLRDAETDRVLG 105
Query: 133 EFKDKVGEIISGTVK---RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDV 189
FK K GE++SG V+ R + +++VD+G + ++R +E + E R GD +++ + +V
Sbjct: 106 SFKGKQGEVVSGVVQQNPRHDSRDLLVDVGEHEAILRVEEQVPTERFRHGDHIRALVLEV 165
Query: 190 RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSID 249
RG V LSRTHP F KLF MEVPEI +G V++ A++R+ G RAK+AV+S ++
Sbjct: 166 SVGTRGASVRLSRTHPDFARKLFEMEVPEIQDGTVEIVALAREAGHRAKIAVWSDIPDVN 225
Query: 250 PVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRI 308
GAC+G G RV+AV TEL EKIDIV + D F+ +L PA V +V + D+ +
Sbjct: 226 AKGACIGHNGQRVRAVTTELGGEKIDIVDYDDDPKAFIAASLSPAKVVRVDILDKAERQA 285
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347
VIVP Q SLAIG+ QNVRLA++LTGW+IDI E +D
Sbjct: 286 RVIVPDGQTSLAIGKEAQNVRLAAKLTGWSIDIRKESDD 324
>gi|296394257|ref|YP_003659141.1| transcription termination factor NusA [Segniliparus rotundus DSM
44985]
gi|296181404|gb|ADG98310.1| transcription termination factor NusA [Segniliparus rotundus DSM
44985]
Length = 342
Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats.
Identities = 137/351 (39%), Positives = 205/351 (58%), Gaps = 31/351 (8%)
Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70
Q A+ EK + + ++ +A ++ A + G SD RV+I+ + G + + V E
Sbjct: 6 QTLRAIEAEKGLSSEKIIDAIASALLTAYKHTDGHQSDARVDIDRKHGAVRV----LVAE 61
Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130
E+ +G P DFGR+A +A+QVI+Q++R+AE D+
Sbjct: 62 RDEDGNL---------------LGEY---DDTPDDFGRIATMTARQVILQRLRDAEGDQG 103
Query: 131 YLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDRV 182
+ + K G+I++G V+R N IV +G+ +GV+ E + E+L GDRV
Sbjct: 104 FADLPVKEGDIVAGVVQRDARANERGLQIVRMGSELKSYEGVLPVAEQVPGESLVHGDRV 163
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
K Y+ V+ +RGPQ+ LSRTHP + KLF +EVPEI +G VQ+ AV+R+ G R+K+AV
Sbjct: 164 KCYVVSVKPGRRGPQITLSRTHPNLVRKLFALEVPEIGDGAVQIVAVAREAGHRSKIAVK 223
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV-TKVVL 301
S+ ++ GAC+G G RV+ V++EL EKID++ + D ATFV NAL PA VL
Sbjct: 224 STVPGLNAKGACIGQNGQRVRNVMSELAGEKIDLIDFDEDPATFVGNALSPARALLTRVL 283
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
D V + V+VP QLSLAIG+ GQN RLA++LTGW IDI +E++ + R+
Sbjct: 284 DPVVKAVRVVVPDSQLSLAIGKEGQNARLAARLTGWRIDIRSEQDPEVARK 334
>gi|221195874|ref|ZP_03568927.1| transcription termination factor NusA [Atopobium rimae ATCC 49626]
gi|221184348|gb|EEE16742.1| transcription termination factor NusA [Atopobium rimae ATCC 49626]
Length = 415
Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats.
Identities = 128/362 (35%), Positives = 190/362 (52%), Gaps = 42/362 (11%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+++ + EK ID +L + S+ K+ + RV I+ TG + ++
Sbjct: 4 EMMEALMTLCQEKHIDELYLLDRLEQSLAKSYADVLHLSYGARVTIDRTTGKVYVY---- 59
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDP---LPPMDFGRVAVQSAKQVIIQKVRE 124
++ +P + G + P R A Q AK I VR+
Sbjct: 60 --------------ELVPKGEPDEETGEYAEFDEVDVTPEGTSRFAAQHAKNEIRALVRD 105
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIR----------RDETISR 173
A R + Y EF ++G+II+GTV + I+ + + + RDE
Sbjct: 106 AARQQIYEEFSHRIGDIITGTVLQSTPDFTIIKIREGVEAELPHFDLRRFPEERDERPFG 165
Query: 174 ENLRPGDRVKSYIYDVRREQR----------GPQVLLSRTHPQFMVKLFHMEVPEIYNGI 223
E R+K+ I DVR P +++SRTHP + +LF +EVPE+Y GI
Sbjct: 166 ERYGHNQRIKAIIIDVRNPNNAQPAVRGERQRPPIVVSRTHPDLIRRLFELEVPEVYEGI 225
Query: 224 VQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283
V +++V+R+PG R+K+AV SSD +DPVGACVG +GSRV+ VV+ELR E++D+V W D
Sbjct: 226 VSIRSVAREPGIRSKIAVSSSDERLDPVGACVGPKGSRVRTVVSELRGERVDVVPWFDDP 285
Query: 284 ATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343
A V +AL PA V++V++D + VIVP +QLSLAIG+ GQN RLA++LTG IDI
Sbjct: 286 ARCVASALSPARVSRVIIDAETRHATVIVPDDQLSLAIGKEGQNARLAARLTGLHIDIKN 345
Query: 344 EE 345
E
Sbjct: 346 ET 347
>gi|320531905|ref|ZP_08032815.1| transcription termination factor NusA [Actinomyces sp. oral taxon
171 str. F0337]
gi|320135874|gb|EFW27912.1| transcription termination factor NusA [Actinomyces sp. oral taxon
171 str. F0337]
Length = 346
Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats.
Identities = 139/359 (38%), Positives = 195/359 (54%), Gaps = 28/359 (7%)
Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64
N EL AD + ID D +L + D+I A + G + VEI+ TG +S+
Sbjct: 4 NMPELRGAADEL----GIDLDNLLPAIEDAILGAYSKVPGAIRGAHVEIDRRTGHMSVLA 59
Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
V++ + T + P DFGR+A +A+ VI+Q++++
Sbjct: 60 PE--VDDDDQPTGE-------------------YFDDTPDDFGRIAQATARSVIVQRIQD 98
Query: 125 AERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRV 182
FKDK GE+ISGTV++ + V V L +G++ E + E R GDRV
Sbjct: 99 RRDFEVLGAFKDKTGELISGTVEQGRDPRIVYVRLDEEHEGIMPPHEQVPAERYRHGDRV 158
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
++Y+ DV R RG Q++LSRTHP + KLF EVPEI +G V++ +V+R+ G R K+AV
Sbjct: 159 RAYVTDVSRGTRGAQIILSRTHPGLVRKLFEREVPEISSGDVEIVSVAREAGHRTKMAVR 218
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VL 301
S ++ GAC+G G RV+AV+TEL EKIDIV S D A F+ NAL PA V V V+
Sbjct: 219 SKVRGVNAKGACIGPMGQRVRAVMTELGGEKIDIVDHSEDPARFIANALSPARVAAVGVI 278
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
D + IVP QLSLAIG+ GQN RLA++LTGW IDI + E ++
Sbjct: 279 DAEERTARAIVPDFQLSLAIGKEGQNARLAARLTGWKIDIHADAESGEITPGQGSQSDD 337
>gi|320094043|ref|ZP_08025865.1| transcription termination factor NusA [Actinomyces sp. oral taxon
178 str. F0338]
gi|319979022|gb|EFW10543.1| transcription termination factor NusA [Actinomyces sp. oral taxon
178 str. F0338]
Length = 342
Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats.
Identities = 128/363 (35%), Positives = 205/363 (56%), Gaps = 26/363 (7%)
Query: 7 LEL-LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+E+ + V EK + D ++ + +++ KA ++ G +S+ R+EI+ +TG +++
Sbjct: 1 MEIDMTALRMVETEKGVSLDTLVDAIEEALLKAYHNIPGAISEARIEIDKKTGRVTVMA- 59
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
V+E E+ +P + P +FGR+A +A+ VI+ ++R+A
Sbjct: 60 ---VDEDED------------GNPIGEFDDT------PKNFGRIAQATARSVIMARLRDA 98
Query: 126 ERDRQYLEFKDKVGEIISGTVK--RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183
+ R + +F + G+II+GTV+ R + + + + V+ E + E R GDR++
Sbjct: 99 DDQRVFGDFAGREGQIITGTVQQSRDGHLTRVQISDDFEAVLPDSEKVPGEAYRHGDRIR 158
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+++ V R +RGP+V LSRTHP + LF EVPEI G+V+++A++R+ G R K+AV +
Sbjct: 159 AFVVGVERTERGPRVTLSRTHPGLVECLFEREVPEIQQGLVRIRAIAREAGHRTKIAVAA 218
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
+ I+ GAC+G G+RV+AV+TEL EKIDIV +S D A FV NAL PA VT+VV+
Sbjct: 219 TREGINAKGACIGPVGARVRAVMTELGGEKIDIVDYSDDPARFVANALSPARVTRVVVHS 278
Query: 304 -DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
D IVP QLSLAIG+ GQN RLA++LT + IDI ++ E
Sbjct: 279 VDNRTATAIVPDFQLSLAIGKEGQNARLAARLTNFHIDIHSDTETGDEATASRVSTPDSV 338
Query: 363 MQA 365
Sbjct: 339 TSR 341
>gi|260889854|ref|ZP_05901117.1| transcription termination factor NusA [Leptotrichia hofstadii
F0254]
gi|260860460|gb|EEX74960.1| transcription termination factor NusA [Leptotrichia hofstadii
F0254]
Length = 386
Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats.
Identities = 130/385 (33%), Positives = 212/385 (55%), Gaps = 5/385 (1%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
M ++ L+ D + EK I ++ +L + ++ A + YG +++V IN +GD+
Sbjct: 2 MKGRDQKIFLEALDELEKEKGILKEELLETIETALLAAYKKNYGEKDNVKVTINRNSGDV 61
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
++ +VE VEN +ISL+ A +G ++ + F R A+Q+AKQ+++Q
Sbjct: 62 KVYSQRLIVENVENPEEEISLQDAISVKKRAKLGDILDLEINAESFKRNAIQNAKQIVVQ 121
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPG 179
KVRE E+ + +FK+ I+S V++ E GN+ VD+ + ++ E + R G
Sbjct: 122 KVRECEKRNIFNKFKEIENSIVSANVRKTDEKGNLYVDINGLEAIVPAKELSPVDIFRQG 181
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
DR+K YI V + + +SR + + L +EVPEIY I++++ ++R+ GSR+K+
Sbjct: 182 DRIKIYIGAVEESTKFTKTFVSRKSEELLRGLLELEVPEIYEEIIEIRNIAREAGSRSKV 241
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV+S+D ++D GAC+G G R+Q ++ EL EKIDIV+W+ D FV NAL PA V V
Sbjct: 242 AVYSNDENLDVKGACIGRNGMRIQNIIDELCGEKIDIVLWNEDITEFVKNALNPAEVLSV 301
Query: 300 VLDEDV----GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355
+ E+ V+V + QLSLAIG++GQN RLA++L G IDI TE + ++
Sbjct: 302 EIIEEGEENMKVARVLVAENQLSLAIGKKGQNSRLAARLCGVKIDIHTEPAEIDEFEEYE 361
Query: 356 NERTQFFMQAINVDEIIAHLLVAEG 380
+ V+E L E
Sbjct: 362 EDTAFNDSFEDEVEESAFAGLHEED 386
>gi|218282331|ref|ZP_03488621.1| hypothetical protein EUBIFOR_01203 [Eubacterium biforme DSM 3989]
gi|218216704|gb|EEC90242.1| hypothetical protein EUBIFOR_01203 [Eubacterium biforme DSM 3989]
Length = 536
Score = 263 bits (671), Expect = 7e-68, Method: Composition-based stats.
Identities = 149/455 (32%), Positives = 238/455 (52%), Gaps = 20/455 (4%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
+L + + ++ + +D+V + +++ KA R +++V ++ G I ++
Sbjct: 9 DLAKALQGIESDRQLSKDIVEDALKEALTKAYRRHIDI-PEVQVRVDIVDGTIHIYHERV 67
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEVE+ ++ L ++ +P+I IG +V + + DF R AV AK V+ QK+REAE+
Sbjct: 68 VVEEVEDDELEVQLDEIQNENPNIKIGDIVDEEVDFKDFDRAAVVLAKNVMKQKIREAEK 127
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
+ Y E+ DKV E++ GT++ VE VIV++G + V+++ I E+ + GD + I
Sbjct: 128 AQVYEEYCDKVDEMVLGTIETVEEKFVIVNIGKTLAVMKKSAQIPTEHYKEGDNILVVIT 187
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
+V +E +G QVL+SR P F+ +LF EVPEIYNGI+++KA++R+ G R K+AV+S + +
Sbjct: 188 EVNKETKGAQVLVSRATPVFVRRLFEREVPEIYNGIIEIKAIAREAGERCKIAVYSHNEN 247
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
IDP+GAC+G RGSRVQ ++ EL EKIDI WS + + + NAL P+ V+ +E V
Sbjct: 248 IDPIGACIGPRGSRVQTIIEELNGEKIDIFEWSDNISELIANALSPSTGVAVIPNETVKD 307
Query: 308 -IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF---- 362
+ V+VP QLSLAIG+RG+N RLA +LT IDI +E E +
Sbjct: 308 GLIVVVPDNQLSLAIGKRGKNARLAVKLTNHKIDIKSESEMQELGIDYMAISKKMQEEYE 367
Query: 363 --------------MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408
+ + +E + F +E E T E
Sbjct: 368 EKKAKERAYKQQQKIDELKSNEAEIENIDVADFTYEDEEVDAVEEHAQDTLFEKENTVEE 427
Query: 409 IQGRAREYLEGIDITLQKKIRELGVSEELCSIPGI 443
+ E L I +K+ V E +
Sbjct: 428 KEVDEMEELARIAKQNRKEKTAADVKEYTSKFESM 462
>gi|282898605|ref|ZP_06306593.1| NusA antitermination factor [Cylindrospermopsis raciborskii CS-505]
gi|281196473|gb|EFA71382.1| NusA antitermination factor [Cylindrospermopsis raciborskii CS-505]
Length = 428
Score = 263 bits (671), Expect = 8e-68, Method: Composition-based stats.
Identities = 138/421 (32%), Positives = 215/421 (51%), Gaps = 32/421 (7%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAA----------RSLYGTM--SDIRVEINPE 56
L + + ++ E+++ R V S + +++ K R + + VE++ +
Sbjct: 9 LKDLIEKISLERNLPRLAVQSSIREALLKGYERYRRAQNLERRQFDENYFDNFEVELDID 68
Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114
+ +VEEV N QISL + P G V + P +FGR+A
Sbjct: 69 GEGFRVLSTKTIVEEVTNGDHQISLDEVQQVAPEAQSGDSVVLDVTPDQGEFGRMAAMQT 128
Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRD 168
KQV+ QK+R+ +R EF+D G ++ V R E +VI+ + + + +
Sbjct: 129 KQVLAQKLRDQQRQMVQEEFQDLEGTVLQARVLRFERQSVILAVSSSFGQPEVEAELPKR 188
Query: 169 ETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227
E + + R K Y+ V + +QRGPQ+L+SR +V LF EVPEI + +V++
Sbjct: 189 EQLPNDTYRSNATFKVYLKKVSQGQQRGPQLLVSRADAGLVVYLFANEVPEIEDEVVRIV 248
Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280
AV+R+ G R K+AV + D +DPVGAC+G RGSR+Q VV ELR EKID++ WS
Sbjct: 249 AVAREANPPSRYVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWS 308
Query: 281 PDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
PD AT++ NAL PA V +V L D + + V+V ++QLSLAIG+ GQNVRLA++LTGW I
Sbjct: 309 PDPATYIANALSPARVDEVRLMDPESRQTHVLVAEDQLSLAIGKEGQNVRLAARLTGWKI 368
Query: 340 DIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIE 399
DI + + + + Q + ++ E + D + E S+E
Sbjct: 369 DIKDQAKYDYGAEDAKFAAVRANYQEESNQLDNQFEVIEEEYEDDPD---AGEDEFNSME 425
Query: 400 G 400
Sbjct: 426 E 426
>gi|68172039|ref|ZP_00545325.1| Transcription termination factor NusA, C-terminal duplication
[Ehrlichia chaffeensis str. Sapulpa]
gi|67998537|gb|EAM85305.1| Transcription termination factor NusA, C-terminal duplication
[Ehrlichia chaffeensis str. Sapulpa]
Length = 318
Score = 262 bits (670), Expect = 9e-68, Method: Composition-based stats.
Identities = 148/331 (44%), Positives = 231/331 (69%), Gaps = 14/331 (4%)
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
RVK++I DVR+E GPQ+ LSR + FM +LF E+PEIY+GIV +KA++RDPGSR+K+A
Sbjct: 1 RVKAHIEDVRKENSGPQIFLSRINKGFMEQLFKQEIPEIYDGIVTIKAIARDPGSRSKVA 60
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
VFSSD +IDPVGACVG RG R+Q +++EL EKID++++SP+ A F++NA+ PA V KV+
Sbjct: 61 VFSSDKNIDPVGACVGARGVRIQGIISELHGEKIDVILYSPELAKFIVNAIAPAEVLKVI 120
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DED ++E+I+P+ QLSLAIGR GQN+RLAS+L GW I++I +E +S + K+ + ++
Sbjct: 121 IDEDKEKVELIIPENQLSLAIGRYGQNIRLASELVGWKINVIGDETESSRKAKELSAGSK 180
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
F++ ++V+EII LL EGF +E++ +S+I++I+GF+EE A E++ RA +YL
Sbjct: 181 IFVEGLDVEEIIGQLLFTEGFVSIEDIDQASVSDISAIDGFNEEIAEELKSRAADYLVRK 240
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
D +++ + L V +++ +P + +AL +NGI ++ED+AG D+
Sbjct: 241 DAEMKQILDNLSVDKDVTMLPFLRPSDIIALSKNGINSLEDIAGLCTDEFFDI------- 293
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGW 511
+ + KDQV+S+I+ +R K+GW
Sbjct: 294 -------IPDIALTKDQVDSVILESRKKIGW 317
>gi|119025371|ref|YP_909216.1| transcription elongation factor NusA [Bifidobacterium adolescentis
ATCC 15703]
gi|154486780|ref|ZP_02028187.1| hypothetical protein BIFADO_00606 [Bifidobacterium adolescentis
L2-32]
gi|118764955|dbj|BAF39134.1| N utilization substance homolog [Bifidobacterium adolescentis ATCC
15703]
gi|154084643|gb|EDN83688.1| hypothetical protein BIFADO_00606 [Bifidobacterium adolescentis
L2-32]
Length = 350
Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats.
Identities = 115/324 (35%), Positives = 188/324 (58%), Gaps = 15/324 (4%)
Query: 21 SIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQIS 80
ID + + + ++++++ A RVE++P G +++ E+ E
Sbjct: 16 GIDPETLDAALSEALRLAYLKTPHAAKHARVELDPRAGSFTVWAQDEIPGEPTEDDPH-- 73
Query: 81 LKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGE 140
P+ +G D P DFGR+A +A+QVI Q R+AE D+ + F + G+
Sbjct: 74 --------PAPTLGEEYDD--TPHDFGRLAAATARQVISQLFRKAEDDKVFGAFSGQKGK 123
Query: 141 IISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQV 198
+I+G V++ + NV V +G+ + ++ R E + E R G+R++ Y+ +V R +GP++
Sbjct: 124 LITGIVQQDVKDTSNVHVAVGDVEALLPRREQVPGERYRHGERIRVYVVNVARGLKGPEI 183
Query: 199 LLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMR 258
++SR+HP+ + +LF EVPE+ +G V + A++R+ G+R K+AV ++ ++P GA +G
Sbjct: 184 VVSRSHPELVRRLFEREVPELVSGAVSIMAIAREAGARTKIAVRANTEGVNPKGALIGPG 243
Query: 259 GSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQL 317
G+RV+AV+ L EKIDIV WS D A FV AL PA+ T V + E + +QL
Sbjct: 244 GARVRAVMENLGPEKIDIVDWSADPAKFVAAALSPAVATGVQVISEKNKTAIAFIHDDQL 303
Query: 318 SLAIGRRGQNVRLASQLTGWTIDI 341
SLAIG+ GQN RLA++LTGW I I
Sbjct: 304 SLAIGKEGQNARLAAKLTGWKIGI 327
>gi|86605175|ref|YP_473938.1| transcription elongation factor NusA [Synechococcus sp. JA-3-3Ab]
gi|86553717|gb|ABC98675.1| transcription termination factor NusA [Synechococcus sp. JA-3-3Ab]
Length = 455
Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats.
Identities = 129/368 (35%), Positives = 204/368 (55%), Gaps = 28/368 (7%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL---------YGTMS--DIRVEINPET 57
L ++ + ++ E+++ R V + + +++ K + + VE++ E
Sbjct: 9 LAEMVEMISRERNLPRHAVTNALREALLKGYERYRKTIQRDVVFEEDHFRNFDVELDVEA 68
Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115
G + +VEEV + +ISL + P ++G V++ + P +FGR+A K
Sbjct: 69 GGFRILATKTIVEEVRDPDHEISLYDVQQDYPEAEVGWEVTNDVTPQQAEFGRMAAIQTK 128
Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169
QV+ QK+R+ +R EF+D ++ V R E VI+ + + + + E
Sbjct: 129 QVLAQKLRDQQRRLIQEEFRDLENTVLQARVLRTERQTVIMAVSSGFGQPEVEAELPKKE 188
Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228
++ + P +K Y+ V +RGPQ+L+SR +V LF EVPEI IV++ A
Sbjct: 189 QLASDRYTPNAVMKVYLKKVYEGSRRGPQLLVSRADAGLVVNLFANEVPEIEEDIVRIVA 248
Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281
V+R+ G R K+AV + + +DPVGAC+G RGSR+QAVV ELR+EKID++ WSP
Sbjct: 249 VAREANPPSRNVGPRTKIAVDTVERDVDPVGACIGARGSRIQAVVAELRNEKIDVIRWSP 308
Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340
D AT++ NAL PA V +V +D ++ + V+V +QLSLAIG+ GQNVRLA++LTGW ID
Sbjct: 309 DPATYIANALSPAKVVEVRLVDPEIQQAHVLVTSDQLSLAIGKEGQNVRLAARLTGWKID 368
Query: 341 IITEEEDS 348
I E
Sbjct: 369 IKEVESYR 376
>gi|86609687|ref|YP_478449.1| transcription elongation factor NusA [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86558229|gb|ABD03186.1| transcription termination factor NusA [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 457
Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats.
Identities = 131/368 (35%), Positives = 205/368 (55%), Gaps = 28/368 (7%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL---------YGTMS--DIRVEINPET 57
L ++ + ++ E+++ R VV + +++ K + + VE++ E
Sbjct: 9 LAEMVEMISRERNLPRHVVTDALREALLKGYERYRKTIQRDVVFAEDHFRNFDVELDVEA 68
Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115
G + +VE+V+N +ISL + P ++G V+D + P +FGR+A K
Sbjct: 69 GGFRVLATKAIVEQVQNPDHEISLYDVQQDYPEAEVGWEVTDDVTPQQAEFGRMAAIQTK 128
Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169
QV+ QK+R+ +R EF+D ++ V R E VI+ + + + + E
Sbjct: 129 QVLAQKLRDQQRRLIQEEFRDLEKTVLQARVLRTERQTVIMSVSSGFGQPEVEAELPKKE 188
Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228
++ + P +K Y+ V +RGPQ+L+SR +V LF EVPEI IV++ A
Sbjct: 189 QLASDRYTPNAVMKVYLKKVYEGSRRGPQLLVSRADAGLVVNLFANEVPEIEEDIVRIVA 248
Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281
V+R+ G R K+AV + + +DPVGAC+G RGSR+QAVV ELR+EKID++ WSP
Sbjct: 249 VAREANPPSRNVGPRTKIAVDTVERDVDPVGACIGARGSRIQAVVAELRNEKIDVIRWSP 308
Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340
D AT++ NAL PA V +V +D ++ + V+V +QLSLAIG+ GQNVRLA++LTGW ID
Sbjct: 309 DPATYIANALSPAKVVEVRLVDPEIQQAHVLVNSDQLSLAIGKEGQNVRLAARLTGWKID 368
Query: 341 IITEEEDS 348
I E
Sbjct: 369 IKEVESYR 376
>gi|75908091|ref|YP_322387.1| transcription elongation factor NusA [Anabaena variabilis ATCC
29413]
gi|75701816|gb|ABA21492.1| NusA antitermination factor [Anabaena variabilis ATCC 29413]
Length = 425
Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats.
Identities = 138/412 (33%), Positives = 216/412 (52%), Gaps = 38/412 (9%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAA----------RSLYGTM--SDIRVEINPE 56
L + ++++ E+++ R V + + +++ K R + + VE++ +
Sbjct: 9 LKDLIESISRERNLPRLAVQAAIREALLKGYERYRRAQNIERKQFDEDYFDNFEVELDID 68
Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114
+ +VEEV N QISL + P +G V + P +FGR+A
Sbjct: 69 EEGFRVLSTKSIVEEVNNSDHQISLDEVQQVAPEAQLGDSVVLDVTPDQGEFGRMAAMQT 128
Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS------DGVIRRD 168
KQV+ QK+R+ +R EF+D ++ V R E +VI+ + ++ + + +
Sbjct: 129 KQVLAQKLRDQQRQMVQEEFQDLESTVLQARVLRFERQSVILAVSSTFGQPEVEAELPKR 188
Query: 169 ETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227
E + +N R K Y+ V + +QRGPQ+L+SR +V LF EVPEI + +V++
Sbjct: 189 EQLPNDNYRANATFKVYLKKVSQGQQRGPQLLVSRADAGLVVYLFANEVPEIEDEVVRIV 248
Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280
AV+R+ G R K+AV + D +DPVGAC+G RGSR+Q VV ELR EKID++ WS
Sbjct: 249 AVAREANPPSRYVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWS 308
Query: 281 PDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
PD AT++ NAL PA V +V L D + + V+V ++QLSLAIG+ GQNVRLA++LTGW I
Sbjct: 309 PDPATYIANALSPARVDEVRLMDPETRQTHVLVAEDQLSLAIGKEGQNVRLAARLTGWKI 368
Query: 340 DIITEEEDSI---------NRQKDFNERTQFFMQAINVDEIIAHLLVAEGFA 382
DI + + R K E + ++ +E L E F
Sbjct: 369 DIKDKAKYDQAAEDAKFVAARAKYQLEEDDIESEELDYEENQEGELEDESFD 420
>gi|227497551|ref|ZP_03927779.1| transcription termination factor NusA [Actinomyces urogenitalis DSM
15434]
gi|226833005|gb|EEH65388.1| transcription termination factor NusA [Actinomyces urogenitalis DSM
15434]
Length = 348
Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats.
Identities = 126/334 (37%), Positives = 188/334 (56%), Gaps = 24/334 (7%)
Query: 17 AYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYT 76
A E ID + +L + D+I A + G + VEI+ +G +++ V+E + T
Sbjct: 12 AQELGIDLEDLLPAIEDAILGAYTKVPGAIRGAHVEIDRRSGHMAVLAPE--VDEEDQPT 69
Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136
+ P DFGR+A +A+ VI+Q++++ FKD
Sbjct: 70 GEF-------------------FDDTPDDFGRIAQATARSVIVQRIQDRRDFEVLGAFKD 110
Query: 137 KVGEIISGTVKR-VEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194
K GE+ISGTV++ + V V L +G++ E + E R GDR+++Y+ +V R +
Sbjct: 111 KAGELISGTVEQGRDPRIVYVRLDEEHEGIMPPHEQVPGERYRHGDRIRAYVTEVSRGPK 170
Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254
G Q++LSRTHP + KLF EVPE+ +G V++ AV+R+ G R K+AV S + GAC
Sbjct: 171 GAQIILSRTHPGLVRKLFEREVPELVSGDVEIMAVAREAGHRTKMAVRSRQRGLGAKGAC 230
Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD-EDVGRIEVIVP 313
+G G RV+AV+ EL EKIDIV +S + A F+ NAL PA V+ V + + + +VP
Sbjct: 231 IGPMGQRVRAVMAELGGEKIDIVDYSDEPARFIANALSPARVSSVHIQSMEDQTAKAVVP 290
Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347
QLSLAIG+ GQN RLA++LTGW IDI + E
Sbjct: 291 DFQLSLAIGKEGQNARLAARLTGWKIDIHADAET 324
>gi|332665272|ref|YP_004448060.1| NusA antitermination factor [Haliscomenobacter hydrossis DSM 1100]
gi|332334086|gb|AEE51187.1| NusA antitermination factor [Haliscomenobacter hydrossis DSM 1100]
Length = 416
Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats.
Identities = 138/407 (33%), Positives = 224/407 (55%), Gaps = 10/407 (2%)
Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77
K+IDR + V+ D + + +G+ + V +N + GD+ L+R+ E+V + V +
Sbjct: 14 KNIDRPTMARVLEDVFRTLIKKKFGSDDNFNVIVNTQNGDLELWRVREIVPDGEVTDDRA 73
Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137
QIS+ A D +IG + L DFGR A+ +A+Q +I ++ E E+D Y + ++
Sbjct: 74 QISISEALAIDEDYEIGEECYERLQLEDFGRRAIMAARQTLISRIMELEKDEVYKSYSER 133
Query: 138 VGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195
VGE+I G + ++ +V D ++ V+ R ETI + R GD VK I V
Sbjct: 134 VGEVIVGEIHQILKKEFLVVDDATGNELVLPRTETIKADFFRKGDMVKGIIRRVELRNNT 193
Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255
P V++SRT F+ KL EVPEI +G++ +K + R PG RAK+AV S D IDPVGACV
Sbjct: 194 PIVVMSRTDNAFLEKLLEAEVPEIEDGLISIKKIVRLPGERAKVAVESYDDRIDPVGACV 253
Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315
GM+GSR+ +V EL +E IDIV ++ +++ ++ AL PA VT++ L+ + +V + E
Sbjct: 254 GMKGSRIHGIVRELNNENIDIVNYTNNASLYIQRALTPAKVTRIELNTETNHADVYLEPE 313
Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHL 375
Q+SLAIG+ G N++LASQLTG+ ID+ + + +++ I
Sbjct: 314 QVSLAIGKSGTNIKLASQLTGYEIDVYRNNTEEYE-----IDDVDLDEFGDEIEDWIIDA 368
Query: 376 LVAEGFADVEELACVKISEIASIEGFDEETAVE-IQGRAREYLEGID 421
L A G + + +E+ +EET + ++ + E+ EG +
Sbjct: 369 LQAIGCDTARSVLNLSKAELLRRTDLEEETIDDVLRVLSAEFEEGEN 415
>gi|254431817|ref|ZP_05045520.1| transcription termination factor NusA [Cyanobium sp. PCC 7001]
gi|197626270|gb|EDY38829.1| transcription termination factor NusA [Cyanobium sp. PCC 7001]
Length = 476
Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats.
Identities = 142/462 (30%), Positives = 219/462 (47%), Gaps = 38/462 (8%)
Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57
+ + ++ EK + VV + + +++ K + S+ V+++ +
Sbjct: 12 LIEDISEEKKLPPAVVEAALREALLKGYERYRRTLYLGISEDPFEEDYFSNFDVQLDLDE 71
Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115
+ +VEEVE+ QI+L + IG V + P DFGR+A + K
Sbjct: 72 EGYRVLASKIIVEEVESEDHQIALAEVQQVADDAQIGDTVVLDVTPEKDDFGRMAAATTK 131
Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169
QV+ QK+R+ +R EF D ++S V R E +VI+ + + + R +
Sbjct: 132 QVLAQKLRDQQRRMIQEEFADLEDPVLSARVVRFERQSVIMAVSSGPGRPEVEAELPRRD 191
Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228
+ +N R +K ++ +V +RGPQ+ +SR + +V LF EVPEI G V++ A
Sbjct: 192 QLPNDNYRANTTLKVFLKEVSEVPRRGPQLFVSRANAGLVVYLFENEVPEIQEGSVRIVA 251
Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281
V+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ WSP
Sbjct: 252 VAREANPPSRSVGPRTKVAVDSVEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRWSP 311
Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340
D ++ N+L PA V V +D D V+VP +QLSLAIGR GQNVRLA++LTGW ID
Sbjct: 312 DPGQYIANSLSPARVEAVRLVDPDGHHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371
Query: 341 IITEEEDSI-------NRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKIS 393
I E Q + + AE A + EL +
Sbjct: 372 IKNAVEYDQASEDAVVAEQIAIRQEEEALHAEAEARLAAEQAARAEEDARLRELYPLPED 431
Query: 394 EIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSE 435
E E +E A E Q + +++ +G +
Sbjct: 432 EEGYQEDGYQEEASEPQAYDEPAMAEASAPEEEQAELVGSED 473
>gi|212716581|ref|ZP_03324709.1| hypothetical protein BIFCAT_01509 [Bifidobacterium catenulatum DSM
16992]
gi|225351012|ref|ZP_03742035.1| hypothetical protein BIFPSEUDO_02593 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|212660285|gb|EEB20860.1| hypothetical protein BIFCAT_01509 [Bifidobacterium catenulatum DSM
16992]
gi|225158468|gb|EEG71710.1| hypothetical protein BIFPSEUDO_02593 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 350
Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats.
Identities = 118/344 (34%), Positives = 197/344 (57%), Gaps = 17/344 (4%)
Query: 21 SIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV-VEEVENYTCQI 79
ID + + + ++++++ A RVE++P G +++ E+ VE E+
Sbjct: 16 GIDPETLDAALSEALRLAYLKTPHAAKHARVELDPRAGSFTVWAQDEIPVEPTEDNPH-- 73
Query: 80 SLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVG 139
P+ +G D P DFGR+A +A+QVI Q R+AE D+ + F + G
Sbjct: 74 ---------PAPTLGEEYDD--TPRDFGRLAAATARQVISQLFRKAEDDKVFGAFSGQKG 122
Query: 140 EIISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197
++I+G V++ + NV V +G+ + ++ R E + E R G+R++ Y+ +V R +GP+
Sbjct: 123 KLITGIVQQDVKDTSNVHVAVGDVEALLPRREQVPGERYRHGERIRVYVVNVARGLKGPE 182
Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGM 257
+++SR+HP+ + +LF EVPE+ +G V + A++R+ G+R K+AV ++ ++P GA +G
Sbjct: 183 IVVSRSHPELVRRLFEREVPELVSGAVSIMAIAREAGARTKIAVRANTEGVNPKGALIGP 242
Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQ 316
G+RV+AV+ L EKIDIV WS D A FV AL PA+ T V + E + +Q
Sbjct: 243 GGARVRAVMENLGPEKIDIVDWSADPAKFVAAALSPAVATGVQVISEKNQTAIAFIHDDQ 302
Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
LSLAIG+ GQN RLA++LTGW I I + E + + ++
Sbjct: 303 LSLAIGKEGQNARLAAKLTGWKIGIESAEAHAKKMAEAQASTSE 346
>gi|83319641|ref|YP_424320.1| transcription elongation factor NusA [Mycoplasma capricolum subsp.
capricolum ATCC 27343]
gi|83283527|gb|ABC01459.1| transcription elongation protein nusA, putative [Mycoplasma
capricolum subsp. capricolum ATCC 27343]
Length = 558
Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats.
Identities = 122/436 (27%), Positives = 229/436 (52%), Gaps = 6/436 (1%)
Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64
N ELL+ + EK I ++ +++ + + +QKA Y T + I+++IN +TG I++ +
Sbjct: 3 NGTELLESIKLIEKEKGISKESIINGLKEGLQKAYERFYDTDAIIKIDINEKTGSITMHQ 62
Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLP-PMDFGRVAVQSAKQVIIQKVR 123
L+VVEE+++ +I+L+ A+ ++P+ IG ++ P+ +F R+ V +Q+ QK+R
Sbjct: 63 ELKVVEELDDDWLEITLQKAKLQNPNAQIGDIIYKPIEFSEEFSRMVVNQVRQIFQQKIR 122
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDRV 182
EAER R Y +F GE++ V + N ++D+ + + +++TI+ E + + +
Sbjct: 123 EAERARIYEQFISLEGEVVQAKVVGMNRENNYVLDINGTTAYLWKNKTINNEIFQINEII 182
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
YI V +E + Q+ +SRT P F+ KL EVPE+ GIV++K VSR+PG R+K+AV
Sbjct: 183 DVYIEVVEKESKLSQIAISRTAPAFLTKLIEREVPEVRMGIVEIKGVSREPGKRSKVAVV 242
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
+ + +++P+GA +G+ G+R+ + L+ EKID++ WS D T++INA+ P V +
Sbjct: 243 THNQNVEPIGAIIGVGGNRINRISDILKGEKIDVIRWSDDQITYLINAMTPVKVISINKI 302
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE--DSINRQKDFNERTQ 360
D +++VP QLSLAIG++G +L + L I+I + + T+
Sbjct: 303 GDE--YDIVVPDSQLSLAIGKQGITAKLIASLLKNKINIFSYSIALKENMDILWNGDTTK 360
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
++ + E + +K E I+ + ++
Sbjct: 361 QEVETNSYIPKTKISKKEEKIVNTIIKKPIKKKEENIIDVDALIAFQAEVEQEQDAKIYE 420
Query: 421 DITLQKKIRELGVSEE 436
+I + ++ +
Sbjct: 421 EINQELADDKVQPDSD 436
>gi|88802100|ref|ZP_01117628.1| transcription elongation factor NusA [Polaribacter irgensii 23-P]
gi|88782758|gb|EAR13935.1| transcription elongation factor NusA [Polaribacter irgensii 23-P]
Length = 418
Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats.
Identities = 131/426 (30%), Positives = 228/426 (53%), Gaps = 21/426 (4%)
Query: 7 LELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
+E + + D+ + KSIDR ++S++ + + + +G+ + + INP+ GD+ ++
Sbjct: 1 MENIALIDSFSEFKDNKSIDRVTLMSILEEVFRATLKRKFGSDDNFDIIINPDKGDLEIW 60
Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
R VV + E+ +I L AR +P +IG VS+ + +D GR A+ + +Q +I K
Sbjct: 61 RNRVVVADGFSEDDNEEIELAEARLIEPDFEIGEDVSEEVKLIDLGRRAILALRQNLISK 120
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGD 180
+ E + + FK+ GE+ S V + + +I+ D ++ V+ + E I + R GD
Sbjct: 121 IYEHDSTNIFKHFKELEGELYSAEVHHIRHNAIILLDDDGNEIVLPKSEQIRSDFFRKGD 180
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
V+ I V P ++LSRT P F+ KLF E+PE+++G++ V+ V+R PG +AK+A
Sbjct: 181 SVRGVIKTVELRGNKPAIILSRTAPAFLNKLFEQEIPEVFDGLITVERVARIPGEKAKVA 240
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S D IDPVGACVG++GSR+ +V EL +E ID++ ++ + F+ AL PA VT +
Sbjct: 241 VDSYDDRIDPVGACVGVKGSRIHGIVRELGNENIDVINYTKNEQLFISRALSPAKVTSME 300
Query: 301 L--DEDVG-----RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353
+ E+ R+ V++ E++S AIGR G N+RLAS+LTG+ ID+ E + + +
Sbjct: 301 IEMYEEERNGKKGRVSVLLRPEEVSKAIGRGGVNIRLASELTGYEIDVKREGLEEEDVEL 360
Query: 354 DFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413
++ + G + + E+ +EET +++Q
Sbjct: 361 TEFGD--------EIEAWVIKEFKNIGLDTARSVLEASVEELVKRTDLEEETILDVQRIL 412
Query: 414 REYLEG 419
+E E
Sbjct: 413 KEEFEQ 418
>gi|261883881|ref|ZP_06007920.1| transcription elongation factor NusA [Campylobacter fetus subsp.
venerealis str. Azul-94]
Length = 307
Score = 261 bits (666), Expect = 3e-67, Method: Composition-based stats.
Identities = 159/271 (58%), Positives = 205/271 (75%)
Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIV 312
ACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVLDED RIEV+V
Sbjct: 1 ACVGMRGSRVQAVVFELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVLDEDAERIEVVV 60
Query: 313 PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEII 372
P +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+ FM+A+NVDE++
Sbjct: 61 PNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEFAERSNLFMEALNVDEMV 120
Query: 373 AHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELG 432
+L +EGFA VEELA V EI+SI+GFDE+TA EIQ RAREYLE I+ + +ELG
Sbjct: 121 GQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREYLERIEAEQDARRKELG 180
Query: 433 VSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLG 492
V++EL +PG+ + + VA+GE+G+KTMED AG +VDDL+GW E K G+ G L+
Sbjct: 181 VADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERKDGDTINHSGVLTPFD 240
Query: 493 TPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523
+ E M++ AR K WI ++++A
Sbjct: 241 LSRVDAEHMVLAARLKACWITEQELAAASGD 271
>gi|210634027|ref|ZP_03297945.1| hypothetical protein COLSTE_01863 [Collinsella stercoris DSM 13279]
gi|210158971|gb|EEA89942.1| hypothetical protein COLSTE_01863 [Collinsella stercoris DSM 13279]
Length = 427
Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats.
Identities = 129/395 (32%), Positives = 204/395 (51%), Gaps = 37/395 (9%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
M A+ +++ + EK ID+ +L + ++ + + +V I+ +G I
Sbjct: 1 MADADMT-MMEALMLLCQEKHIDQLYLLDRLEAALAETYAKVLKLDWGAKVTIDRASGKI 59
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
++R LE +++ + + + P D R+A Q+AK I
Sbjct: 60 YVYR-LEPIDDSMDEEGNFT--------------EYEEIDVTPKDVSRLAAQTAKAEINA 104
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIR----------RDE 169
VR A R++ Y EF +VG++I+GTV + IV + + + R+E
Sbjct: 105 IVRNAAREQIYEEFSGRVGDLINGTVLQSTPDFTIVKIRDGVEAELPHFDQRRYPDERNE 164
Query: 170 TISRENLRPGDRVKSYIYDVRREQR----------GPQVLLSRTHPQFMVKLFHMEVPEI 219
+ E +K+ I DVR P +++SRTH + M +LF EVPE+
Sbjct: 165 RPNGERYLHNQHLKAVIVDVRDPNSTLPPVRGEHSRPPIVISRTHAELMRRLFEQEVPEV 224
Query: 220 YNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVW 279
Y G V++K+++R+PG R+K+AV S D +DPVGACVG +GSRV+AVV ELR E++D+++W
Sbjct: 225 YEGTVELKSIAREPGMRSKVAVHSLDDRLDPVGACVGPKGSRVRAVVGELRGERVDVILW 284
Query: 280 SPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
D A +V NAL PA VT+V++D + VIVP +QLSLAIG+ GQN RLA++LTGW I
Sbjct: 285 DEDPAVYVANALSPAKVTRVLIDPEKNYAGVIVPDDQLSLAIGKEGQNARLAARLTGWHI 344
Query: 340 DIITEEEDSINRQKDFNERTQFFMQAINVDEIIAH 374
DI +E + + ++ D
Sbjct: 345 DIKSETLAADILKNVPLAPEPAVEDLLDEDTADFE 379
>gi|306823536|ref|ZP_07456911.1| transcription termination factor NusA [Bifidobacterium dentium ATCC
27679]
gi|309802869|ref|ZP_07696970.1| transcription termination factor NusA [Bifidobacterium dentium
JCVIHMP022]
gi|304553243|gb|EFM41155.1| transcription termination factor NusA [Bifidobacterium dentium ATCC
27679]
gi|308220336|gb|EFO76647.1| transcription termination factor NusA [Bifidobacterium dentium
JCVIHMP022]
Length = 346
Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats.
Identities = 117/343 (34%), Positives = 195/343 (56%), Gaps = 15/343 (4%)
Query: 21 SIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQIS 80
ID + + + ++++++ A R+E++P G +++ E+ E
Sbjct: 16 GIDPETLDAALSEALRLAYLKTPHAAKHARIELDPRAGSFTVWAQDEIPGEPTEEDPH-- 73
Query: 81 LKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGE 140
P+ +G D P DFGR+A +A+QVI Q R+AE D+ + F + G+
Sbjct: 74 --------PAPTLGEEYDD--TPHDFGRLAAATARQVISQLFRKAEDDKVFGAFSGQKGK 123
Query: 141 IISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQV 198
+I+G V++ + NV V +G+ + ++ R E + E R G+R++ Y+ +V R +GP++
Sbjct: 124 LITGIVQQDAKDTANVHVAVGDVEALLPRREQVPGERYRHGERIRVYVVNVARGLKGPEI 183
Query: 199 LLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMR 258
++SR+HP+ + +LF EVPE+ +G V + A++R+ G+R K+AV ++ ++P GA +G
Sbjct: 184 VVSRSHPELVRRLFEREVPELVSGAVSIMAIAREAGARTKIAVRANTEGVNPKGALIGPG 243
Query: 259 GSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQL 317
G+RV+AV+ L EKIDIV WS D A FV AL PA+ T V + E + +QL
Sbjct: 244 GARVRAVMENLGPEKIDIVDWSADPAKFVAAALSPAVATGVQVISEKNNTAIAFIHDDQL 303
Query: 318 SLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
SLAIG+ GQN RLA++LTGW I I + E + Q+ E +
Sbjct: 304 SLAIGKEGQNARLAAKLTGWKIGIESAEAHARKMQESAGESAE 346
>gi|213964507|ref|ZP_03392707.1| transcription termination factor NusA [Corynebacterium amycolatum
SK46]
gi|213952700|gb|EEB64082.1| transcription termination factor NusA [Corynebacterium amycolatum
SK46]
Length = 328
Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats.
Identities = 129/346 (37%), Positives = 198/346 (57%), Gaps = 31/346 (8%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
L + EK I D +L ++A +++++ R+ RVEI+ ETGD+ +F
Sbjct: 5 LAALRTLEKEKGIPVDEMLGLVARALRESYRNTTAPAQYARVEIDRETGDVIVF------ 58
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
A++RD ++ D P DF R A + +Q I+ ++R+AE D+
Sbjct: 59 --------------AQERDDEGNLISEWDD--TPEDFERTAAFAVRQTILSRLRDAESDK 102
Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETISRENLRPGDR 181
E+ D ++ISG V+R Y N V+V +G DG++ E + E L+ GDR
Sbjct: 103 VLDEYADLSNQVISGVVQRDVYANEKGIVVVHIGSEANGRDGILMPAEQLPGEELKHGDR 162
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K Y+ V + RG + LSRTHP+ + KLF +E+PE+ +G V++ +++R+ G R K+AV
Sbjct: 163 IKCYVVGVNKTPRGVAIHLSRTHPELIRKLFELEIPEVADGAVELISIAREAGHRTKVAV 222
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
+ ++ GAC+G RG RV +++ EL+ EKIDI+ + D A FV N+L PA V V +
Sbjct: 223 RPTVKGLNAKGACIGPRGQRVSSIMNELKGEKIDIIDYDEDPAKFVGNSLAPAKVVSVKI 282
Query: 302 -DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346
D D R V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ E
Sbjct: 283 LDMDERRAHVVVPDYQLSLAIGKEGQNARLAARLTGWRIDIHSDAE 328
>gi|171741240|ref|ZP_02917047.1| hypothetical protein BIFDEN_00314 [Bifidobacterium dentium ATCC
27678]
gi|283455398|ref|YP_003359962.1| N utilization substance protein A [Bifidobacterium dentium Bd1]
gi|171276854|gb|EDT44515.1| hypothetical protein BIFDEN_00314 [Bifidobacterium dentium ATCC
27678]
gi|283102032|gb|ADB09138.1| nusA N utilization substance protein A [Bifidobacterium dentium
Bd1]
Length = 346
Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats.
Identities = 117/343 (34%), Positives = 195/343 (56%), Gaps = 15/343 (4%)
Query: 21 SIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQIS 80
ID + + + ++++++ A R+E++P G +++ E+ E
Sbjct: 16 GIDPETLDAALSEALRLAYLKTPHAAKHARIELDPRAGSFTVWAQDEIPGEPTEEDPH-- 73
Query: 81 LKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGE 140
P+ +G D P DFGR+A +A+QVI Q R+AE D+ + F + G+
Sbjct: 74 --------PAPTLGEEYDD--TPHDFGRLAAATARQVISQLFRKAEDDKVFGAFSGQKGK 123
Query: 141 IISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQV 198
+I+G V++ + NV V +G+ + ++ R E + E R G+R++ Y+ +V R +GP++
Sbjct: 124 LITGIVQQDAKDTANVHVAVGDVEALLPRREQVPGERYRHGERIRVYVVNVARGLKGPEI 183
Query: 199 LLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMR 258
++SR+HP+ + +LF EVPE+ +G V + A++R+ G+R K+AV ++ ++P GA +G
Sbjct: 184 VVSRSHPELVRRLFEREVPELVSGAVSIMAIAREAGARTKIAVRANTEGVNPKGALIGPG 243
Query: 259 GSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQL 317
G+RV+AV+ L EKIDIV WS D A FV AL PA+ T V + E + +QL
Sbjct: 244 GARVRAVMENLGPEKIDIVDWSADPAKFVAAALSPAVATGVQVISEKNNTAIAFIHDDQL 303
Query: 318 SLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
SLAIG+ GQN RLA++LTGW I I + E + Q+ E +
Sbjct: 304 SLAIGKEGQNARLAAKLTGWKIGIESAEAHAKKMQESAGESAE 346
>gi|257784634|ref|YP_003179851.1| NusA antitermination factor [Atopobium parvulum DSM 20469]
gi|257473141|gb|ACV51260.1| NusA antitermination factor [Atopobium parvulum DSM 20469]
Length = 413
Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats.
Identities = 127/362 (35%), Positives = 194/362 (53%), Gaps = 42/362 (11%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+++ + EK ID +L + S+ K+ + RV I+ TG + ++
Sbjct: 4 EMMEALMLLCQEKHIDELYLLDRLEQSLAKSYADVLHLDFGARVTIDRATGRVYVY---- 59
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDP---LPPMDFGRVAVQSAKQVIIQKVRE 124
++ +P + G + P D R+A Q AK I VR
Sbjct: 60 --------------ELVPKGEPDEETGEYTEFDEVDVTPPDTSRIAAQHAKAEIKTLVRN 105
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIR----------RDETISR 173
A R + Y EF+ +VG+II+GTV + I+ + + + RDE +
Sbjct: 106 AARAQIYDEFRGRVGDIITGTVLQSTPDFTIIKIREGVEAELPHFDQRRFPDERDERPAG 165
Query: 174 ENLRPGDRVKSYIYDVRREQ----------RGPQVLLSRTHPQFMVKLFHMEVPEIYNGI 223
E R+K+ I DVR + P +++SRTHP + +LF +EVPE+Y+G+
Sbjct: 166 ERYLHNQRIKAIIVDVRDPNATQPAVRGERQRPPIVVSRTHPDLIRRLFELEVPEVYDGV 225
Query: 224 VQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283
V +++++R+ G R+K+AV S D +DPVGACVG +GSRV+ VV+ELR E++D+V W D+
Sbjct: 226 VSIRSIAREAGVRSKIAVSSVDERLDPVGACVGPKGSRVRTVVSELRGERVDVVPWFDDA 285
Query: 284 ATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343
A V +AL PA V++V++D G VIVP +QLSLAIG+ GQN RLA++LTG IDI
Sbjct: 286 ARCVASALSPARVSRVIVDGATGHATVIVPDDQLSLAIGKEGQNARLAARLTGLHIDIKN 345
Query: 344 EE 345
E
Sbjct: 346 ES 347
>gi|216264195|ref|ZP_03436187.1| transcription elongation protein NusA [Borrelia burgdorferi 156a]
gi|221217568|ref|ZP_03589037.1| transcription elongation protein NusA [Borrelia burgdorferi 72a]
gi|225550297|ref|ZP_03771256.1| transcription elongation protein NusA [Borrelia burgdorferi 118a]
gi|215980668|gb|EEC21475.1| transcription elongation protein NusA [Borrelia burgdorferi 156a]
gi|221192514|gb|EEE18732.1| transcription elongation protein NusA [Borrelia burgdorferi 72a]
gi|225369165|gb|EEG98619.1| transcription elongation protein NusA [Borrelia burgdorferi 118a]
Length = 482
Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats.
Identities = 124/395 (31%), Positives = 232/395 (58%), Gaps = 7/395 (1%)
Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75
+A ++ + D + + +S+ A + +G+ + V+ + +TGD+S++ ++V+EV++
Sbjct: 12 IANDRGMSIDSIRKTIKESVLIAYKKYFGSNENAFVKFDDDTGDLSVYAKKKIVKEVKDS 71
Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135
+I K + I G + P F R+++Q AKQ ++ E + EFK
Sbjct: 72 LLEILEKDISKEN--IVEGDYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEILSEFK 129
Query: 136 DKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195
K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ + G
Sbjct: 130 SKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYNLNDKIRVLVYNVKKGKNG 189
Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255
+V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDPVG C+
Sbjct: 190 IEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPVGPCI 249
Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPK 314
G +G R+Q+++ EL EKIDI+ +S D F+ ++L P+ + V + DED+ + V+V
Sbjct: 250 GQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPSKIEHVYILDEDLHKALVVVSD 309
Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAH 374
+QLSLAIG+ GQNVRLA++L W ID+ T + + + ++ M D+++
Sbjct: 310 DQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFAEMKANSEFKQETLEM----FDKVMQD 365
Query: 375 LLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409
++ E F ++ +++ +K+ + + I +E +I
Sbjct: 366 VVEEEQFEEISKISDLKLLDPSVISNLSKEGLDDI 400
>gi|302335788|ref|YP_003800995.1| transcription termination factor NusA [Olsenella uli DSM 7084]
gi|301319628|gb|ADK68115.1| transcription termination factor NusA [Olsenella uli DSM 7084]
Length = 414
Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats.
Identities = 125/359 (34%), Positives = 191/359 (53%), Gaps = 36/359 (10%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+++ A+ EK ID ++ + S+ K+ + RV I+ TG ++
Sbjct: 4 EMMEALMALCQEKHIDELYLIDRLEQSLAKSYAEILHLDFGARVTIDRATG--RVYVYKL 61
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
V E N D + + + P D R+A Q AK I + VR + R
Sbjct: 62 VPEGDIN-------------DETGEFDNFEEVDVTPKDASRIAAQHAKSEIAEIVRNSAR 108
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIR----------RDETISRENL 176
+ + EF +VG+II+GTV + + + + + R+E E
Sbjct: 109 QQIFEEFSQRVGDIITGTVLQTTPDFAFIKIREGVEAELPYFDQRRYPDERNERPVGERY 168
Query: 177 RPGDRVKSYIYDVRREQRGPQ----------VLLSRTHPQFMVKLFHMEVPEIYNGIVQV 226
R+++ I DVR +++SRTHP + +LF +EVPE+Y G+V+V
Sbjct: 169 IHNQRIRAIIVDVRDPNSNQPPIRGERQRPSIVVSRTHPDLIRRLFELEVPEVYEGVVEV 228
Query: 227 KAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATF 286
++V+R+ G R+K+AV S D +DPVGACVG +GSRV+ VV+ELR E++D+V+WS D +
Sbjct: 229 RSVAREAGVRSKVAVSSLDDRLDPVGACVGPKGSRVRTVVSELRGERVDVVLWSDDPSRC 288
Query: 287 VINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345
V NAL PA V++V++D + VIVP +QLSLAIG+ GQN RLA++LTG IDI E
Sbjct: 289 VANALSPARVSRVIVDPENNYATVIVPDDQLSLAIGKEGQNARLAARLTGMHIDIKNES 347
>gi|255326386|ref|ZP_05367470.1| transcription termination factor NusA [Rothia mucilaginosa ATCC
25296]
gi|255296603|gb|EET75936.1| transcription termination factor NusA [Rothia mucilaginosa ATCC
25296]
Length = 365
Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats.
Identities = 120/347 (34%), Positives = 201/347 (57%), Gaps = 24/347 (6%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
L A+A ++S+ + + +++ +++ A G + R I+ TG+ +
Sbjct: 9 LGALRALAKQRSLVMEELFTLVENALLLAYMKQPGAIKGSRAVIDHTTGEFVIL------ 62
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
A + D D P +FGR+A + +QV+ Q++R+AE
Sbjct: 63 --------------APELDEDNQKIDEFDD--TPNNFGRIAAATVRQVLSQRLRDAEDAS 106
Query: 130 QYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
EFKD+ G ++SG +++ ++ VDLG + V+ +E + E G R+++Y+ +
Sbjct: 107 VLGEFKDREGTLVSGVIQQGNNPRMVQVDLGTVEAVLPSNEQVPGEKYPHGSRLRAYLVE 166
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
RR +GP +++SR+HP +++LF EVPEI G+V + +++R+ G R+K+AV + + +I
Sbjct: 167 ARRGPKGPSIVVSRSHPNLVLRLFEHEVPEISEGLVSINSIAREAGHRSKIAVSAKNPTI 226
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307
+ GAC+G G+RV+AV EL DEKIDIV +S D ATF+ AL PA VT+V++ +
Sbjct: 227 NAKGACIGDMGARVRAVAAELNDEKIDIVDYSTDPATFIAAALSPAKVTEVIIANPREYS 286
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354
+VP +QLSLAIGR GQN RLA++LTGW IDI++E + + R ++
Sbjct: 287 ARAVVPDDQLSLAIGREGQNARLAAKLTGWRIDILSESKYAQVRAEE 333
>gi|308235445|ref|ZP_07666182.1| transcription elongation factor NusA [Gardnerella vaginalis ATCC
14018]
gi|311114226|ref|YP_003985447.1| transcription termination factor NusA [Gardnerella vaginalis ATCC
14019]
gi|310945720|gb|ADP38424.1| transcription termination factor NusA [Gardnerella vaginalis ATCC
14019]
Length = 349
Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats.
Identities = 119/348 (34%), Positives = 197/348 (56%), Gaps = 19/348 (5%)
Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV--VEEV 72
+A ++ I+ + + +A++++ A RVE++ G +++ E+ V
Sbjct: 10 QLAAQQGINAEELDEALAEALRLAYMKTSHPARHARVELDERAGSFTVWAKDEIPGVPTE 69
Query: 73 ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYL 132
+N P+ +G D P DFGR+A +A+QVI Q R+ E DR +
Sbjct: 70 DNPH------------PAPTLGEEYDD--TPRDFGRLAAATARQVITQLFRKVEDDRVFG 115
Query: 133 EFKDKVGEIISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190
F + G++I+G V++ + N+ V +G+ + ++ R E + E R G+R++ Y+ +V
Sbjct: 116 AFSGQKGKLINGVVQQDSKDPSNIHVAVGDVEAILPRREQVPGERYRHGERIRVYVVNVA 175
Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250
R RGP++++SR+HP + +LF EVPE+ +G V + A++R+ G+R K+AV ++ ++P
Sbjct: 176 RGLRGPEIVVSRSHPDLVRRLFEREVPELVSGAVSIMAIAREAGARTKIAVRANTEGVNP 235
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIE 309
GA +G GSRV+AV+ L EKIDIV WS D A FV AL PA T+V + E
Sbjct: 236 KGALIGPGGSRVRAVMENLGPEKIDIVDWSEDPAKFVAAALSPATATQVHVVSEKSQTAV 295
Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
+ QLSLAIG+ GQN RLA++LTGW I I + EE + +++ +
Sbjct: 296 AFIHDSQLSLAIGKEGQNARLAAKLTGWKIGIESAEEHAKKQEEMNAD 343
>gi|224534126|ref|ZP_03674706.1| transcription elongation protein NusA [Borrelia spielmanii A14S]
gi|224514551|gb|EEF84865.1| transcription elongation protein NusA [Borrelia spielmanii A14S]
Length = 482
Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats.
Identities = 124/396 (31%), Positives = 234/396 (59%), Gaps = 7/396 (1%)
Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74
++A ++S+ + + + +S+ A + +G+ + ++ + +TGD+ ++ ++VEEV++
Sbjct: 11 SIANDRSMSIESIRKTIKESVLIAYKKYFGSNENAFIKFDDDTGDLVVYAKKKIVEEVKD 70
Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134
+IS K + I G + P F R+++Q AKQ ++ E + EF
Sbjct: 71 SFFEISEKDISREN--IVEGDYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEILSEF 128
Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194
K K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ +
Sbjct: 129 KSKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYSLNDKIRVLVYNVKKGKN 188
Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254
G +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDPVG C
Sbjct: 189 GIEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPVGPC 248
Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK-VVLDEDVGRIEVIVP 313
+G +G R+Q+++ EL EKIDI+ +S D F+ +AL P+ + ++DED+ + V+V
Sbjct: 249 IGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDALTPSKIEHVYIIDEDLHKALVVVS 308
Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIA 373
+QLSLAIG+ GQNVRLA++L W ID+ T + + + ++ M D+++
Sbjct: 309 DDQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFAEMKANSEFKQETLEM----FDKVMQ 364
Query: 374 HLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409
++ E F ++ +++ +K+ + + I +E +I
Sbjct: 365 DVVEEEQFEEISKISDLKLLDSSVISNLSKEGLDDI 400
>gi|294790399|ref|ZP_06755557.1| transcription termination factor NusA [Scardovia inopinata F0304]
gi|294458296|gb|EFG26649.1| transcription termination factor NusA [Scardovia inopinata F0304]
Length = 372
Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats.
Identities = 110/341 (32%), Positives = 187/341 (54%), Gaps = 15/341 (4%)
Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75
+A E+ I+ + + + ++++++ A RVE++ G +++ E+ +E
Sbjct: 11 LAAEQGIEPERLDAALSEALRLAYLKTPHAARHARVELDERAGSFTVWAQKEIPQEPTEE 70
Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135
P +G D P FGR A A+QVI R+ D + F
Sbjct: 71 DPH----------PKPVLGEEYDD--TPEGFGRQAAYIARQVITALFRKVADDNIFGAFA 118
Query: 136 DKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193
+ G++I+G V++ + GN+ + +G+ + ++ R E + E R G+RV+ Y+ V +
Sbjct: 119 GQKGKLITGVVQQDSNDRGNLHIAVGDVEALLPRREQVPGERFRHGERVRVYVVSVNKGL 178
Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGA 253
+GP++++SR+HP+ + +LF EVPE+ G VQ+ +++R+ G R K+AV ++ ++P G+
Sbjct: 179 KGPEIIVSRSHPELIRRLFEREVPELVTGAVQIMSIAREAGERTKIAVRANAQGVNPKGS 238
Query: 254 CVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVIV 312
+G G RV+AV+ L +EKIDIV WS D A FV AL PA KV + E ++
Sbjct: 239 LIGPAGQRVRAVMENLGNEKIDIVDWSEDPAKFVSAALSPAHAVKVSVVSERNKTAVALI 298
Query: 313 PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353
+QLSLAIG+ GQN RLA++LTGW I I + E ++
Sbjct: 299 HDDQLSLAIGKEGQNARLAAKLTGWKIGIESYEASQRKDEQ 339
>gi|254226551|ref|ZP_04920134.1| Transcription elongation factor [Vibrio cholerae V51]
gi|125620955|gb|EAZ49306.1| Transcription elongation factor [Vibrio cholerae V51]
Length = 271
Score = 259 bits (663), Expect = 7e-67, Method: Composition-based stats.
Identities = 114/287 (39%), Positives = 176/287 (61%), Gaps = 18/287 (6%)
Query: 229 VSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVI 288
+RDPGSRAK+AV ++D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVI
Sbjct: 2 AARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVI 61
Query: 289 NALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
NA+ PA V +++DED +++ V + L+ AIGR GQNVRLASQLTGW ++++T +
Sbjct: 62 NAMAPADVASIIMDEDAHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQ 121
Query: 349 INRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408
Q++ + FM+ +++++ A LLV EGF+ +EE+A V ++E+ ++G DE+ A E
Sbjct: 122 KKHQEESMASIENFMKYLDIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADE 181
Query: 409 IQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVD 468
++ RA+E L I + ++ L +E+L ++ G++ + L G+ T+EDLA VD
Sbjct: 182 LRSRAKEALTTIALAKEESFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVD 241
Query: 469 DLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
DL G G + + +I+ AR + W ++
Sbjct: 242 DLEGIE-----------------GLTEQRAGELIMAAR-NICWFGED 270
>gi|283458507|ref|YP_003363135.1| transcription elongation factor [Rothia mucilaginosa DY-18]
gi|283134550|dbj|BAI65315.1| transcription elongation factor [Rothia mucilaginosa DY-18]
Length = 365
Score = 259 bits (663), Expect = 7e-67, Method: Composition-based stats.
Identities = 120/347 (34%), Positives = 201/347 (57%), Gaps = 24/347 (6%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
L A+A ++S+ + + +++ +++ A G + R I+ TG+ +
Sbjct: 9 LGALRALAKQRSLVMEELFTLVENALLLAYMKQPGAIKGSRAVIDHTTGEFVIL------ 62
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
A + D D P +FGR+A + +QV+ Q++R+AE
Sbjct: 63 --------------APELDEDNQKIDEFDD--TPNNFGRIAAATVRQVLSQRLRDAEDAS 106
Query: 130 QYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
EFKD+ G ++SG +++ ++ VDLG + V+ +E + E G R+++Y+ +
Sbjct: 107 VLGEFKDREGTLVSGVIQQGNNPRMVQVDLGTVEAVLPSNEQVPGEKYPHGSRLRAYLVE 166
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
RR +GP +++SR+HP +++LF EVPEI G+V + +++R+ G R+K+AV + + +I
Sbjct: 167 ARRGPKGPSIVVSRSHPNLVLRLFEHEVPEISEGLVAINSIAREAGHRSKIAVSAKNPTI 226
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307
+ GAC+G G+RV+AV EL DEKIDIV +S D ATF+ AL PA VT+V++ +
Sbjct: 227 NAKGACIGDMGARVRAVAAELNDEKIDIVDYSTDPATFIAAALSPAKVTEVIIANPREYS 286
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354
+VP +QLSLAIGR GQN RLA++LTGW IDI++E + + R ++
Sbjct: 287 ARAVVPDDQLSLAIGREGQNARLAAKLTGWRIDILSESKYAQVRAEE 333
>gi|294786395|ref|ZP_06751649.1| transcription termination factor NusA [Parascardovia denticolens
F0305]
gi|294485228|gb|EFG32862.1| transcription termination factor NusA [Parascardovia denticolens
F0305]
Length = 372
Score = 259 bits (663), Expect = 7e-67, Method: Composition-based stats.
Identities = 115/329 (34%), Positives = 188/329 (57%), Gaps = 15/329 (4%)
Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75
+A E+ ID + + + ++++++ A RVE++ G +++ E+ +E
Sbjct: 11 LAAEQGIDAERLDAALSEALRLAYLKNPHAAKHARVELDERAGSFTVWAQDEIPQEPT-- 68
Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135
A D P +G D P DFGR A A+QVI R+A D+ + F
Sbjct: 69 --------AEDPHPRPALGEEYDD--TPEDFGRQAAYIARQVITALFRKAADDKIFGAFA 118
Query: 136 DKVGEIISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193
+ G++I+G V++ + GN+ + +G+ + ++ R E + E R G R++ Y+ V R
Sbjct: 119 GQKGKLITGVVQQDSGDRGNLHIAVGDVEAILPRREQVPGERFRHGQRIRVYVVSVNRGL 178
Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGA 253
+GP++++SR+HP+ + +LF EVPE+ +G VQ+ +++R+ G R K+AV ++ ++P GA
Sbjct: 179 KGPEIIVSRSHPELIRRLFEREVPELASGAVQIMSIAREAGERTKIAVRANAQGVNPKGA 238
Query: 254 CVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVIV 312
+G G RV+AV+ L DEKIDIV WS D A FV AL PA KV + E ++
Sbjct: 239 LIGPAGQRVRAVMENLGDEKIDIVDWSEDPAKFVGAALSPAHAVKVTVVSEKNKTTLALI 298
Query: 313 PKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
+Q+SLAIG+ GQN RLA++LTGW I I
Sbjct: 299 HDDQMSLAIGKEGQNARLAAKLTGWKIAI 327
>gi|51599052|ref|YP_073240.1| transcription elongation factor NusA [Borrelia garinii PBi]
gi|51573623|gb|AAU07648.1| N-utilization substance protein A [Borrelia garinii PBi]
Length = 482
Score = 259 bits (662), Expect = 7e-67, Method: Composition-based stats.
Identities = 129/426 (30%), Positives = 239/426 (56%), Gaps = 16/426 (3%)
Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74
++A ++S+ + + + +S+ A + +G+ + V+ + TGD+ ++ ++VEEV++
Sbjct: 11 SIANDRSMSIESIRKTIKESVLIAYKKYFGSNENAFVKFDDNTGDLVVYAKKKIVEEVKD 70
Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134
+I K + I G + P F R+++Q AKQ ++ E + EF
Sbjct: 71 SLLEILEKDISKEN--IVEGDYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEILSEF 128
Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194
K K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ +
Sbjct: 129 KSKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYSLNDKIRVLVYNVKKGKN 188
Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254
G +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDPVG C
Sbjct: 189 GIEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPVGPC 248
Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVP 313
+G +G R+Q+++ EL EKIDI+ +S D F+ ++L PA + V + DED+ + V+V
Sbjct: 249 IGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPAKIDHVYILDEDLHKALVVVS 308
Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIA 373
+QLSLAIG+ GQNVRLA++L W ID+ T + + + ++ M D+++
Sbjct: 309 DDQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFAEMKANSEFKQETLEM----FDKVMQ 364
Query: 374 HLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE---------GIDITL 424
++ E F D+ +++ +K+ + + I +E +I + E +
Sbjct: 365 DVVEEEQFEDISKISDLKLLDSSVISNLSKEGLDDINNFLQADEEVLFNLGVSYEKQEEI 424
Query: 425 QKKIRE 430
K ++E
Sbjct: 425 NKILKE 430
>gi|50365108|ref|YP_053533.1| transcription elongation factor NusA [Mesoplasma florum L1]
gi|50363664|gb|AAT75649.1| transcription terminator [Mesoplasma florum L1]
Length = 471
Score = 259 bits (662), Expect = 8e-67, Method: Composition-based stats.
Identities = 133/451 (29%), Positives = 223/451 (49%), Gaps = 15/451 (3%)
Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64
N ++L+ ++ EKSI ++V + + + QKA + T + ++ EIN +TG I+LF+
Sbjct: 3 NGAQILEALASLESEKSISKEVAIEGIKEGFQKAYERFFDTEAVVKTEINEQTGSINLFQ 62
Query: 65 LLEVV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPP-MDFGRVAVQSAKQVIIQ 120
L VV +E+E+ +I L+ A + +G V P+ +F RVAV +Q+ Q
Sbjct: 63 ELMVVATDDEIEDDWLEIVLEDALKINKEAKVGDKVYKPIDFDEEFSRVAVGQVRQIFQQ 122
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGN--VIVDLGNSDGVIRRDETISRENLRP 178
K+R ER Y +F GEI+ G + + I+D+ + +TI+RE
Sbjct: 123 KIRATERAMIYEKFIQLEGEIVRGKIVGMNDQGTSYILDIDGVHTSLWNQKTINREEFVV 182
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
+ V + +V RE + Q+++SR P+F+ KL EV E+ G+V+V +VSR+PG RAK
Sbjct: 183 NELVDVLLEEVARENKYSQLVVSRVAPKFLAKLVEKEVSEVAQGLVEVMSVSREPGKRAK 242
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV S D ++P+GA VG++GSR+ + ELR EKID+V W + F+INA+ P V
Sbjct: 243 IAVLSHDEDVEPIGAIVGVKGSRINNISKELRGEKIDVVKWDDEIIPFIINAMAPVKVIS 302
Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD--FN 356
++E G +++VP +QLSLAIG+ G +L + L I+I + E +
Sbjct: 303 --VNEVEGEFDIVVPNQQLSLAIGKGGMAAKLVANLLKRRINIYSLENAITDNMDVLWNG 360
Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADV----EELACVKISEIASIEGFDEETAVEIQGR 412
T+ + + + + + + + F E E +
Sbjct: 361 NITEEEVNNPDFINEVNKRKINSQTVKPEYHKNSFRNAQANNEEELMSFQAE-VEEEYNQ 419
Query: 413 AREYLEGIDITLQKKIRELGVSEELCSIPGI 443
E +E + +Q+ + EL S I
Sbjct: 420 VEELIEETNAVVQENKDLESIQSELESFNDI 450
>gi|225551696|ref|ZP_03772640.1| transcription elongation protein NusA [Borrelia sp. SV1]
gi|225371723|gb|EEH01149.1| transcription elongation protein NusA [Borrelia sp. SV1]
Length = 482
Score = 259 bits (662), Expect = 8e-67, Method: Composition-based stats.
Identities = 130/444 (29%), Positives = 239/444 (53%), Gaps = 23/444 (5%)
Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75
+A ++ + D + + +S+ A + +G+ + ++ + +TGD+S++ ++V+EV++
Sbjct: 12 IANDRGMSIDSIRKTIKESVLIAYKKYFGSNENAFIKFDDDTGDLSVYAKKKIVKEVKDS 71
Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135
+I K + I G + P F R+++Q AKQ ++ E + EFK
Sbjct: 72 FLEILEKDISKEN--IVEGDYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEILSEFK 129
Query: 136 DKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195
K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ + G
Sbjct: 130 SKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYNLNDKIRVLVYNVKKGKNG 189
Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255
+V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDPVG C+
Sbjct: 190 IEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPVGPCI 249
Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPK 314
G +G R+Q+++ EL EKIDI+ +S D F+ ++L P+ + V + DED+ + V+V
Sbjct: 250 GQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPSKIEHVYILDEDLHKALVVVSD 309
Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAH 374
+QLSLAIG+ GQNVRLA++L W ID+ T + + + ++ M + +++
Sbjct: 310 DQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFAEMKANSEFKQETLEMFDKVMQDVVEE 369
Query: 375 LLVAE----------GFADVEELACVKISEIASIEGFDE----------ETAVEIQGRAR 414
E + + +L+ + +I + DE E EI +
Sbjct: 370 EQFEEISKISDLKLLDPSVISDLSKEGLDDINNFLQADEGLLFNLGVSYEKQEEINKILK 429
Query: 415 EYLEGIDITLQKKIRELGVSEELC 438
E + I + I ++ EEL
Sbjct: 430 EGMIIIANDNDESIEKVEEDEELL 453
>gi|229815167|ref|ZP_04445504.1| hypothetical protein COLINT_02213 [Collinsella intestinalis DSM
13280]
gi|229809397|gb|EEP45162.1| hypothetical protein COLINT_02213 [Collinsella intestinalis DSM
13280]
Length = 426
Score = 259 bits (662), Expect = 8e-67, Method: Composition-based stats.
Identities = 127/358 (35%), Positives = 196/358 (54%), Gaps = 36/358 (10%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+++ + EK ID+ +L + ++ + + +V I+ TG I ++R LE
Sbjct: 8 MMEALMELCQEKHIDQLYLLDRLEAALAETYARVLKLDWGAKVTIDRTTGKIYVYR-LEP 66
Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
+++ + + + P D R+A Q+AK I VR A R+
Sbjct: 67 IDDSMDEEGNFT--------------EYEEIDVTPKDVSRLAAQTAKAEINAIVRNAARE 112
Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIR----------RDETISRENLR 177
+ Y EF +VG++I+GTV + IV + + + R+E + E
Sbjct: 113 QIYEEFSGRVGDLINGTVLQSTPDFTIVKIREGVEAELPHFDQRRYPDERNERPAGERYL 172
Query: 178 PGDRVKSYIYDVRREQR----------GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227
+K+ I DVR P +++SRTH + M +LF EVPE+Y G V++K
Sbjct: 173 HNQHLKAVIIDVRDPNSTLPPVRGEHSRPPIVISRTHSELMRRLFEQEVPEVYEGTVELK 232
Query: 228 AVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFV 287
+++R+PG R+K+AV S D +DPVGACVG +GSRV+AVV ELR E++D+++W D A +V
Sbjct: 233 SIAREPGQRSKVAVHSLDDRLDPVGACVGPKGSRVRAVVGELRGERVDVILWDEDPAVYV 292
Query: 288 INALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345
NAL PA VT+V++D + VIVP +QLSLAIG+ GQN RLA++LTGW IDI +E
Sbjct: 293 ANALSPAKVTRVLIDPEKNYAGVIVPDDQLSLAIGKEGQNARLAARLTGWHIDIKSET 350
>gi|313665234|ref|YP_004047105.1| transcription termination factor NusA [Mycoplasma leachii PG50]
gi|312949351|gb|ADR23947.1| transcription termination factor NusA [Mycoplasma leachii PG50]
Length = 558
Score = 259 bits (661), Expect = 1e-66, Method: Composition-based stats.
Identities = 127/461 (27%), Positives = 242/461 (52%), Gaps = 17/461 (3%)
Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64
N ELL+ + EK I ++ +++ + + +QKA Y T + I+++IN +TG I++ +
Sbjct: 3 NGTELLESIKLIEKEKGISKESIINGLKEGLQKAYERFYDTDAIIKIDINEKTGSITMHQ 62
Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLP-PMDFGRVAVQSAKQVIIQKVR 123
L+VVEE+++ +I+L+ A+ ++P+ IG ++ P+ +F R+ V +Q+ QK+R
Sbjct: 63 ELKVVEELDDDWLEITLQKAKLQNPNAQIGDIIYKPIEFSEEFSRMVVNQVRQIFQQKIR 122
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDRV 182
EAER R Y +F GE++ V + N ++D+ + + +++TI+ E + + +
Sbjct: 123 EAERARIYEQFISLEGEVVQAKVVGMNRENNYVLDINGTTAYLWKNKTINNEIFQINEII 182
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
YI V +E + Q+ +SRT P F+ KL EVPE+ GIV++KAVSR+PG R+K+AV
Sbjct: 183 DVYIEVVEKESKLSQIAISRTAPAFLTKLIEREVPEVRMGIVEIKAVSREPGKRSKVAVV 242
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
+ + +++P+GA +G+ G+R+ + L+ EKID++ WS D T++INA+ P V +
Sbjct: 243 THNQNVEPIGAIIGVGGNRINRISDILKGEKIDVIRWSDDQITYLINAMTPVKVISINKI 302
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
D +++VP QLSLAIG++G +L + L I+I + ++ +
Sbjct: 303 GDE--YDIVVPDSQLSLAIGKQGITAKLIASLLKTKINIFS-----------YSIALKEN 349
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
M + + + + +++ + + ++ + E +
Sbjct: 350 MDILWNGDTTKQEVKTNSYIPKTKISKKEEKIVNTVVKKPVKRREENIIDVDALMAFQAE 409
Query: 423 TLQKKIRE--LGVSEELCSIPGIDSKIKVALGENGIKTMED 461
Q++ + S++L + + K N IK +D
Sbjct: 410 VEQEQDAKIYEEDSQDLVNDKDQINSNKAKTIINVIKDKDD 450
>gi|331703354|ref|YP_004400041.1| transcriptional terminator [Mycoplasma mycoides subsp. capri LC
str. 95010]
gi|328801909|emb|CBW54062.1| Transcriptional terminator [Mycoplasma mycoides subsp. capri LC
str. 95010]
Length = 584
Score = 259 bits (661), Expect = 1e-66, Method: Composition-based stats.
Identities = 124/455 (27%), Positives = 230/455 (50%), Gaps = 7/455 (1%)
Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64
N ELL+ + EK I ++ +++ + + +QKA Y T + I+++IN TG I++ +
Sbjct: 3 NGTELLESIKLIEKEKGISKESIINGLKEGLQKAYERFYDTDAIIKIDINENTGLITMHQ 62
Query: 65 LLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLP-PMDFGRVAVQSAKQVIIQK 121
L+VV++ +++ +I+L A+ ++P I IG + P+ +F R+ V +Q+ QK
Sbjct: 63 ELKVVDDEQLDDDWLEITLSKAKLKNPDIQIGDTIYKPIEFSEEFSRMVVNQVRQIFQQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGD 180
+REAER R Y +F GE++ V + N ++D+ + + + +TI+ E + +
Sbjct: 123 IREAERARIYEQFVSLEGEVVQAKVVGMNRENNYVLDINGTTAYLWKSKTINNEIFQINE 182
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
+ YI V +E + Q+ +SRT P F+ KL EVPE+ GIV++KAVSR+PG R+K+A
Sbjct: 183 IIDVYIEVVEKESKLSQISISRTAPNFLTKLIEREVPEVRMGIVEIKAVSREPGKRSKVA 242
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V + +++++P+GA +G+ G+R+ + L+ EKIDI+ W D T++INA+ P V +
Sbjct: 243 VITHNNNVEPIGAIIGVGGNRINRISDILKGEKIDIIRWDEDQITYLINAMTPVKVISIN 302
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
D +++VP QLSLAIG++G +L + L I+I +
Sbjct: 303 KIGDE--YDIVVPDSQLSLAIGKQGVAAKLIASLLKTKINIFSYSTALKENMDILWNGDT 360
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
+ + V + + E + I +A E
Sbjct: 361 TIQEVETNTYTPKTKATKKEEKPVITTTKKPVKQTIKKEENQIDVDALIAFQAEVEHEQE 420
Query: 421 DITLQKKIRELGV-SEELCSIPGIDSKIKVALGEN 454
++ +++ + E + +++ ++ L E
Sbjct: 421 LKDQEELLKQESMYKEYENNFNDFENEKEILLAEK 455
>gi|22299480|ref|NP_682727.1| transcription elongation factor NusA [Thermosynechococcus elongatus
BP-1]
gi|22295663|dbj|BAC09489.1| transcription termination-antitermination factor
[Thermosynechococcus elongatus BP-1]
Length = 395
Score = 259 bits (661), Expect = 1e-66, Method: Composition-based stats.
Identities = 117/375 (31%), Positives = 197/375 (52%), Gaps = 29/375 (7%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARS----------LYGTM--SDIRVEINPE 56
L + + ++ E+++ + V + +++ K + ++ VE++ E
Sbjct: 9 LRAMINEISQERNLPKHAVHQALKEALLKGYERYRRSLRSDHSHFEEDHFANFEVELDTE 68
Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114
+ + E VEN +I+L + +G V + P +FGR+A
Sbjct: 69 QEGFRILATKTIKETVENPDREIALADVIEVVQDARVGDTVLLDVTPDHQEFGRMAAMQT 128
Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRD 168
KQV+ QK+R+ +R EFK+ G ++ G V R E +VI+ + + + +
Sbjct: 129 KQVLAQKLRDQQRRLIQEEFKELEGTVLLGRVLRFERQSVIMAVRSDASQPEVEAELPKW 188
Query: 169 ETISRENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227
E + +N R K Y+ V+ RGPQ+ +SR +V LF EVPEI + +V++
Sbjct: 189 EQLPNDNYRANSTFKVYLKRVKEGPQRGPQLEVSRADAGLVVYLFANEVPEIEDEVVRIV 248
Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280
A++R+ G R K+AV + + +DPVGAC+G RGSR+QAVV ELR EKID++ WS
Sbjct: 249 AIAREANPPNHKVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGEKIDVIRWS 308
Query: 281 PDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
PD AT++ N+L PA V +V ++ + V+V +++S AIG+ GQNVRLA++LTGW I
Sbjct: 309 PDPATYIANSLSPAPVEEVRLINPEARIAHVLVAPDKVSQAIGKEGQNVRLATRLTGWKI 368
Query: 340 DIITEEEDSINRQKD 354
++ + + +
Sbjct: 369 EVRDSSQYNYEEEDR 383
>gi|219684959|ref|ZP_03539900.1| transcription elongation protein NusA [Borrelia garinii PBr]
gi|219671697|gb|EED28753.1| transcription elongation protein NusA [Borrelia garinii PBr]
Length = 482
Score = 259 bits (661), Expect = 1e-66, Method: Composition-based stats.
Identities = 130/445 (29%), Positives = 238/445 (53%), Gaps = 23/445 (5%)
Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74
++A ++S+ + + + +S+ A + +G+ + V+ + TGD+ ++ ++VEEV++
Sbjct: 11 SIANDRSMSIESIRKTIKESVLIAYKKYFGSNENAFVKFDDNTGDLVVYAKKKIVEEVKD 70
Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134
+I K + I G + P F R+++Q AKQ ++ E + EF
Sbjct: 71 SLLEILEKDISKEN--IVEGDYAYIEINPKIFDRLSIQVAKQRTKNDLQGIEDNEILSEF 128
Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194
K K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ +
Sbjct: 129 KSKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYSLNDKIRVLVYNVKKGKN 188
Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254
G +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDP+G C
Sbjct: 189 GIEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPIGPC 248
Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVP 313
+G +G R+Q+++ EL EKIDI+ +S D F+ ++L PA + V + DED+ + V+V
Sbjct: 249 IGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPAKIDHVYILDEDLHKALVVVS 308
Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIA 373
+QLSLAIG+ GQNVRLA++L W ID+ T + + + ++ M + +++
Sbjct: 309 DDQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFAEMKANSEFKQETLEMFNKVMQDVVE 368
Query: 374 HL----------LVAEGFADVEELACVKISEIASIEGFDEETA----------VEIQGRA 413
L + + L+ + +I + DEE EI
Sbjct: 369 EEQFEDISKISDLKLLDSSVISNLSKEGLDDINNFLQADEEVLFNLGVSYEKQEEINKIL 428
Query: 414 REYLEGIDITLQKKIRELGVSEELC 438
+E + I + + ++ EEL
Sbjct: 429 KEGMIIIANENDESMEKVEEDEELL 453
>gi|219685679|ref|ZP_03540493.1| transcription elongation protein NusA [Borrelia garinii Far04]
gi|219672795|gb|EED29820.1| transcription elongation protein NusA [Borrelia garinii Far04]
Length = 482
Score = 259 bits (661), Expect = 1e-66, Method: Composition-based stats.
Identities = 131/445 (29%), Positives = 238/445 (53%), Gaps = 23/445 (5%)
Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74
++A ++S+ + + + +S+ A + +G+ + V+ + TGD+ ++ ++VEEV++
Sbjct: 11 SIANDRSMSIESIRKTIKESVLIAYKKYFGSNENAFVKFDDNTGDLVVYAKKKIVEEVKD 70
Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134
+I K + I G + P F R+++Q AKQ ++ E + EF
Sbjct: 71 SLLEILEKDISKEN--IVEGDYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEILSEF 128
Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194
K K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ +
Sbjct: 129 KSKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYSLNDKIRVLVYNVKKGKN 188
Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254
G +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDPVG C
Sbjct: 189 GIEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPVGPC 248
Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVP 313
+G +G R+Q+++ EL EKIDI+ +S D F+ ++L PA + V + DED+ + V+V
Sbjct: 249 IGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPAKIDHVYILDEDLHKALVVVS 308
Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIA 373
+QLSLAIG+ GQNVRLA++L W ID+ T + + + ++ M + +++
Sbjct: 309 DDQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFAEMKANSEFKQETLEMFDKVMQDVVE 368
Query: 374 HL----------LVAEGFADVEELACVKISEIASIEGFDEETA----------VEIQGRA 413
L + + L+ + +I + DEE EI
Sbjct: 369 EEQFEDISKISDLKLLDSSVISNLSKEGLDDINNFLQADEEVLFNLGVSYEKQEEINKIL 428
Query: 414 REYLEGIDITLQKKIRELGVSEELC 438
+E + I + + ++ EEL
Sbjct: 429 KEGMIIIANENDESMEKVEEDEELL 453
>gi|298253047|ref|ZP_06976839.1| transcription elongation factor NusA [Gardnerella vaginalis 5-1]
gi|297532442|gb|EFH71328.1| transcription elongation factor NusA [Gardnerella vaginalis 5-1]
Length = 360
Score = 258 bits (660), Expect = 1e-66, Method: Composition-based stats.
Identities = 119/363 (32%), Positives = 200/363 (55%), Gaps = 15/363 (4%)
Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74
+A ++ I+ + + +A++++ A +RVE++ G +++ E+ +
Sbjct: 10 QLAAQQGINAEELDEALAEALRLAYMKTAHPAKHVRVELDERAGSFTVWARDEIPGKPTE 69
Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134
P+ +G D P DFGR+A +A+QVI Q R+AE DR + F
Sbjct: 70 DNP----------YPAPTLGEEYDD--TPHDFGRLAAATARQVISQIFRKAEDDRVFGAF 117
Query: 135 KDKVGEIISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192
+ G++I+G +++ + N+ V +G+ + ++ R E + E R G+R++ Y+ +V R
Sbjct: 118 SGQKGKLINGIIQQDAKDNTNIHVAVGDVEAILPRREQVPGERYRHGERIRVYVVNVARG 177
Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252
RGP++++SR+HP+ + +LF EVPE+ +G V + +++R+ G+R K+AV ++ ++P G
Sbjct: 178 LRGPEIVVSRSHPELVRRLFEREVPELVSGAVSIMSIAREAGARTKIAVRANTEGVNPKG 237
Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVI 311
A +G GSRV+AV+ L EKIDIV WS D A FV AL PA T+V + E
Sbjct: 238 ALIGPGGSRVRAVMENLGQEKIDIVDWSSDPAKFVAAALSPATATQVQVVSEKNQTAVAF 297
Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEI 371
+ QLSLAIG+ GQN RLA++LTGW I I + EE + + Q +N +
Sbjct: 298 IHDAQLSLAIGKEGQNARLAAKLTGWKIGIESAEEHAKKVAAAQAQNAQPASADLNNNAS 357
Query: 372 IAH 374
A
Sbjct: 358 AAE 360
>gi|283782785|ref|YP_003373539.1| transcription termination factor NusA [Gardnerella vaginalis
409-05]
gi|283441834|gb|ADB14300.1| transcription termination factor NusA [Gardnerella vaginalis
409-05]
Length = 360
Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats.
Identities = 119/363 (32%), Positives = 200/363 (55%), Gaps = 15/363 (4%)
Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74
+A ++ I+ + + +A++++ A +RVE++ G +++ E+ +
Sbjct: 10 QLAAQQGINAEELDEALAEALRLAYMKTAHPAKHVRVELDERAGSFTVWARDEIPGKPTE 69
Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134
P+ +G D P DFGR+A +A+QVI Q R+AE DR + F
Sbjct: 70 DNP----------YPAPTLGEEYDD--TPRDFGRLAAATARQVISQIFRKAEDDRVFGAF 117
Query: 135 KDKVGEIISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192
+ G++I+G +++ + N+ V +G+ + ++ R E + E R G+R++ Y+ +V R
Sbjct: 118 SGQKGKLINGIIQQDAKDNTNIHVAVGDVEAILPRREQVPGERYRHGERIRVYVVNVARG 177
Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252
RGP++++SR+HP+ + +LF EVPE+ +G V + +++R+ G+R K+AV ++ ++P G
Sbjct: 178 LRGPEIVVSRSHPELVRRLFEREVPELVSGAVSIMSIAREAGARTKIAVRANTEGVNPKG 237
Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVI 311
A +G GSRV+AV+ L EKIDIV WS D A FV AL PA T+V + E
Sbjct: 238 ALIGPGGSRVRAVMENLGQEKIDIVDWSSDPAKFVAAALSPATATQVQVVSEKNQTAVAF 297
Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEI 371
+ QLSLAIG+ GQN RLA++LTGW I I + EE + + Q +N +
Sbjct: 298 IHDAQLSLAIGKEGQNARLAAKLTGWKIGIESAEEHAKKVAAAQAQNAQPASADLNNNAS 357
Query: 372 IAH 374
A
Sbjct: 358 AAE 360
>gi|282898464|ref|ZP_06306454.1| NusA antitermination factor [Raphidiopsis brookii D9]
gi|281196630|gb|EFA71536.1| NusA antitermination factor [Raphidiopsis brookii D9]
Length = 424
Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats.
Identities = 135/415 (32%), Positives = 210/415 (50%), Gaps = 29/415 (6%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAA----------RSLYGTM--SDIRVEINPE 56
L + + ++ E+++ R V S + +++ K R + + VE++ +
Sbjct: 9 LKDLIEKISLERNLPRLAVQSSIREALLKGYERYRRAQNLERRQFDENYFDNFEVELDID 68
Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114
+ +VEEV N QISL + P G V + P +FGR+A
Sbjct: 69 GEGFRVLSTKIIVEEVTNSDHQISLDEVQQVAPEAQSGDSVVLDVTPDQGEFGRMAAMQT 128
Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRD 168
KQV+ QK+R+ +R EF+D G ++ V R E +VI+ + + + +
Sbjct: 129 KQVLAQKLRDQQRQMVQEEFQDLEGTVLQARVLRFERQSVILAVSSSFGQPEVEAELPKR 188
Query: 169 ETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227
E + + R K Y+ V + +QRGPQ+L+SR +V LF EVPEI + +V++
Sbjct: 189 EQLPNDTYRSNATFKVYLKKVSQGQQRGPQLLVSRADAGLVVYLFANEVPEIEDEVVRIV 248
Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280
AV+R+ G R K+AV + D +DPVGAC+G RGSR+Q VV ELR EKID++ WS
Sbjct: 249 AVAREANPPSRYVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWS 308
Query: 281 PDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
PD AT++ NAL PA V +V L D + + V+V ++QLSLAIG+ GQNVRLA++LTGW I
Sbjct: 309 PDPATYIANALSPARVDEVRLMDPESRQTHVLVAEDQLSLAIGKEGQNVRLAARLTGWKI 368
Query: 340 DIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISE 394
DI + + + + Q + + + E+ E
Sbjct: 369 DIKDQAKYDYGAEDAKFAAVRANYQEESNQFEVIEEEYERDPDEGEDDFNSMEEE 423
>gi|226320845|ref|ZP_03796397.1| transcription elongation protein NusA [Borrelia burgdorferi 29805]
gi|226233711|gb|EEH32440.1| transcription elongation protein NusA [Borrelia burgdorferi 29805]
gi|312149161|gb|ADQ29232.1| transcription elongation protein NusA [Borrelia burgdorferi N40]
Length = 482
Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats.
Identities = 123/395 (31%), Positives = 232/395 (58%), Gaps = 7/395 (1%)
Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75
+A ++ + D + + +S+ A + +G+ + ++ + +TGD+S++ ++V+EV++
Sbjct: 12 IANDRGMSIDSIRKTIKESVLIAYKKYFGSNENAFIKFDDDTGDLSVYAKKKIVKEVKDS 71
Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135
+I K + I G + P F R+++Q AKQ ++ E + EFK
Sbjct: 72 LLEILEKDISKEN--IVEGDYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEILSEFK 129
Query: 136 DKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195
K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ + G
Sbjct: 130 SKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYNLNDKIRVLVYNVKKGKNG 189
Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255
+V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDPVG C+
Sbjct: 190 IEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPVGPCI 249
Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPK 314
G +G R+Q+++ EL EKIDI+ +S D F+ ++L P+ + V + DED+ + V+V
Sbjct: 250 GQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPSKIEHVYILDEDLHKALVVVSD 309
Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAH 374
+QLSLAIG+ GQNVRLA++L W ID+ T + + + ++ M D+++
Sbjct: 310 DQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFAEMKANSEFKQETLEM----FDKVMQD 365
Query: 375 LLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409
++ E F ++ +++ +K+ + + I +E +I
Sbjct: 366 VVEEEQFEEISKISDLKLLDPSVISNLSKEGLDDI 400
>gi|224533442|ref|ZP_03674035.1| transcription elongation protein NusA [Borrelia burgdorferi
CA-11.2a]
gi|225549360|ref|ZP_03770332.1| transcription elongation protein NusA [Borrelia burgdorferi 94a]
gi|224513404|gb|EEF83762.1| transcription elongation protein NusA [Borrelia burgdorferi
CA-11.2a]
gi|225369988|gb|EEG99429.1| transcription elongation protein NusA [Borrelia burgdorferi 94a]
gi|312148269|gb|ADQ30928.1| transcription elongation protein NusA [Borrelia burgdorferi JD1]
Length = 482
Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats.
Identities = 123/395 (31%), Positives = 232/395 (58%), Gaps = 7/395 (1%)
Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75
+A ++ + D + + +S+ A + +G+ + ++ + +TGD+S++ ++V+EV++
Sbjct: 12 IANDRGMSIDSIRKTIKESVLIAYKKYFGSNENAFIKFDDDTGDLSVYAKKKIVKEVKDS 71
Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135
+I K + I G + P F R+++Q AKQ ++ E + EFK
Sbjct: 72 LLEILEKDISKEN--IVEGDYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEILSEFK 129
Query: 136 DKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195
K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ + G
Sbjct: 130 SKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYNLNDKIRVLVYNVKKGKNG 189
Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255
+V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDPVG C+
Sbjct: 190 IEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPVGPCI 249
Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPK 314
G +G R+Q+++ EL EKIDI+ +S D F+ ++L P+ + V + DED+ + V+V
Sbjct: 250 GQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPSKIEHVYILDEDLHKALVVVSD 309
Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAH 374
+QLSLAIG+ GQNVRLA++L W ID+ T + + + ++ M D+++
Sbjct: 310 DQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFAEMKANSEFKQETLEM----FDKVMQD 365
Query: 375 LLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409
++ E F ++ +++ +K+ + + I +E +I
Sbjct: 366 VVEEEQFEEISKISDLKLLDPSVISNLSKEGLDDI 400
>gi|139436991|ref|ZP_01771151.1| Hypothetical protein COLAER_00125 [Collinsella aerofaciens ATCC
25986]
gi|133776638|gb|EBA40458.1| Hypothetical protein COLAER_00125 [Collinsella aerofaciens ATCC
25986]
Length = 415
Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats.
Identities = 130/359 (36%), Positives = 197/359 (54%), Gaps = 36/359 (10%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
+++ + EK ID+ ++ + S+ K+ + +V I+ TG I ++R LE
Sbjct: 5 DMMSALMELCQEKHIDQLYLIDRLEQSLAKSYAEILHLEWGAKVTIDRTTGKIYVYR-LE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
+++ + + + P + R+A Q AK I VR + R
Sbjct: 64 PIDDSMDEEGNFT--------------EFEEIDVTPKNTSRIAAQHAKAEINAIVRNSAR 109
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIR----------RDETISRENL 176
++ Y EF ++G++ISGTV + IV + + + R+E E
Sbjct: 110 EQIYEEFSGRIGDLISGTVLQSTPDFTIVKIREGVEAELPHFDQRRYENERNERPMGERY 169
Query: 177 RPGDRVKSYIYDVRREQRGPQ----------VLLSRTHPQFMVKLFHMEVPEIYNGIVQV 226
+K+ I DVR Q +++SRTHP+ M +LF EVPEIY G VQ+
Sbjct: 170 LHNQHIKAVIIDVRDPNSNLQPVRGEHSRPPIVISRTHPELMRRLFEQEVPEIYEGTVQI 229
Query: 227 KAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATF 286
K+++R+PG R+K+AV S D +DPVGACVG +GSRV+AVV ELR E++D+++W D A +
Sbjct: 230 KSIAREPGQRSKVAVHSLDDRLDPVGACVGPKGSRVRAVVGELRGERVDVILWDADPAVY 289
Query: 287 VINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345
V NAL PA VT+V++DE+ VIVP +QLSLAIG+ GQN RLA++LTGW IDI +E
Sbjct: 290 VANALSPAKVTRVLIDEEKAYAGVIVPDDQLSLAIGKEGQNARLAARLTGWHIDIKSET 348
>gi|297242938|ref|ZP_06926876.1| transcription elongation factor NusA [Gardnerella vaginalis AMD]
gi|296889149|gb|EFH27883.1| transcription elongation factor NusA [Gardnerella vaginalis AMD]
Length = 360
Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats.
Identities = 119/363 (32%), Positives = 200/363 (55%), Gaps = 15/363 (4%)
Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74
+A ++ I+ + + +A++++ A +RVE++ G +++ E+ +
Sbjct: 10 QLAAQQGINAEELDEALAEALRLAYMKTAHPAKHVRVELDERAGSFTVWARDEIPGKPTE 69
Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134
P+ +G D P DFGR+A +A+QVI Q R+AE DR + F
Sbjct: 70 DNP----------YPAPTLGEEYDD--TPRDFGRLAAATARQVISQIFRKAEDDRVFGAF 117
Query: 135 KDKVGEIISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192
+ G++I+G +++ + N+ V +G+ + ++ R E + E R G+R++ Y+ +V R
Sbjct: 118 SGQKGKLINGIIQQDAKDNTNIHVAVGDVEAILPRREQVPGERYRHGERIRVYVVNVARG 177
Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252
RGP++++SR+HP+ + +LF EVPE+ +G V + +++R+ G+R K+AV ++ ++P G
Sbjct: 178 LRGPEIVVSRSHPELVRRLFEREVPELVSGAVSIMSIAREAGARTKIAVRANTEGVNPKG 237
Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVI 311
A +G GSRV+AV+ L EKIDIV WS D A FV AL PA T+V + E
Sbjct: 238 ALIGPGGSRVRAVMENLGQEKIDIVDWSSDPAKFVAAALSPATATQVQVVSEKNQTAVAF 297
Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEI 371
+ QLSLAIG+ GQN RLA++LTGW I I + EE + + Q +N +
Sbjct: 298 IHDAQLSLAIGKEGQNARLAAKLTGWKIGIESAEEHAKKVAAAQAQNAQPASVDLNNNAS 357
Query: 372 IAH 374
A
Sbjct: 358 AAE 360
>gi|254412331|ref|ZP_05026105.1| transcription termination factor NusA [Microcoleus chthonoplastes
PCC 7420]
gi|196180641|gb|EDX75631.1| transcription termination factor NusA [Microcoleus chthonoplastes
PCC 7420]
Length = 459
Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats.
Identities = 123/386 (31%), Positives = 203/386 (52%), Gaps = 29/386 (7%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARS----------LYGTM--SDIRVEINPE 56
L ++ + ++ ++ + V + +++ K + ++ V+++ E
Sbjct: 9 LKKMIEEISQSHNLPKSAVQQALREALIKGYERYRRAQRMERPHFDDEYFNNFEVDLDIE 68
Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114
+ +VEEV N ISLK ++ +G V + P DFGR+A
Sbjct: 69 EEGFRILCTKTIVEEVGNTDHHISLKEVQEVASEAQLGDSVVLDVTPDQRDFGRMAAIQT 128
Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRD 168
KQV+ QK+R+ +R EF++ G ++ V R E +VI+ + + + +
Sbjct: 129 KQVLSQKLRDQQRKLIQEEFEELEGTVLQARVLRFERQSVIMAISSGFGQPEVEAELPKR 188
Query: 169 ETISRENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227
E + + R G K ++ VR RGPQ+++SR +V LF EVPEI + +V++
Sbjct: 189 EQLPNDTYRIGSTFKVFLKKVREGPHRGPQLVVSRASAGLVVYLFANEVPEIEDEVVRIV 248
Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280
AV+R+ G R K+AV + + +DPVGAC+G RGSR+Q VV ELR EKID++ WS
Sbjct: 249 AVAREANPPSRHVGPRTKIAVDTLERDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWS 308
Query: 281 PDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
PD AT++ NAL PA V +V +++ + + ++V ++QLSLAIG+ GQNVRLA++LTGW I
Sbjct: 309 PDPATYIANALSPARVEEVLLVNPEGRQAHILVAEDQLSLAIGKEGQNVRLAARLTGWKI 368
Query: 340 DIITEEEDSINRQKDFNERTQFFMQA 365
DI + + + Q +
Sbjct: 369 DIKDIAKYDYEAEHQKMQELQAAIAQ 394
>gi|320528334|ref|ZP_08029496.1| transcription termination factor NusA [Solobacterium moorei F0204]
gi|320131248|gb|EFW23816.1| transcription termination factor NusA [Solobacterium moorei F0204]
Length = 581
Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats.
Identities = 143/438 (32%), Positives = 232/438 (52%), Gaps = 12/438 (2%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLLE 67
LL V +K++ ++VL + +++ KA + +++ EIN ++ I +++
Sbjct: 8 LLNAIRGVEDDKNVPENIVLEALTEAVAKAFKKDSELQDIEVKAEINKKSKTIDIYQYYN 67
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEVE+ +ISL+ A+ D + ++GG V + R A AK V QK+REAE+
Sbjct: 68 VVEEVEDDELEISLEDAKKLDSNAELGGQVREKKEITSMSRAAASLAKNVFRQKIREAEK 127
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y E+ D+ E++ GTV+ V+ ++ LG + ++ + I E L G ++ I
Sbjct: 128 VAVYNEYIDQKDEMVIGTVESVKDKFTLISLGKTVALLSKSAEIPHEKLTEGQSIRVVIT 187
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
DV++E +G QVL+SR + +LF EVPEIY G+V++K+++R+ G R K+AV S +
Sbjct: 188 DVQKETKGSQVLVSRADATLVKRLFEKEVPEIYQGVVEIKSIAREAGERTKMAVLSHNPD 247
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DP+G+C+G RGSRVQ ++ EL EKIDI W+ D V NAL PA + V+ +D
Sbjct: 248 VDPIGSCIGPRGSRVQKIIDELHGEKIDIFQWNDDITELVKNALAPAEIISVLPGQDDNS 307
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
+ VIV ++QLSLAIG+RG+N RLA +LTG IDI T +E + Q +
Sbjct: 308 LLVIVSEDQLSLAIGKRGKNARLAVKLTGHKIDIKTRQELEDMGKDYDELLAQAEVMKQK 367
Query: 368 VDEIIAHLLVAEG--------FADVEELACVKISEIASIEGFDEETA-VEIQGRAREYLE 418
+ E V + +A + SI DEE E+ R + +
Sbjct: 368 LAEQAKAKSVERQKAAAKEEEEKRLAAIAKFRAENPDSIVDEDEEYIPEEMMERVNDTII 427
Query: 419 GI--DITLQKKIRELGVS 434
+ +++ +E +
Sbjct: 428 AEISNQPDEEEHQEAAIE 445
>gi|18158875|pdb|1K0R|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Nusa
gi|18158876|pdb|1K0R|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Nusa
Length = 366
Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats.
Identities = 129/344 (37%), Positives = 198/344 (57%), Gaps = 31/344 (9%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ A+ ++ I + +L + ++ A R G +D R+EI+ +TG + +
Sbjct: 24 MAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRV------- 76
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
+AR+ D + ++ D P FGR+A +A+QV++Q+ R+AE +R
Sbjct: 77 -------------IARETDEAGNLISEWDD--TPEGFGRIAATTARQVMLQRFRDAENER 121
Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDR 181
Y EF + GEI++G ++R N V+V +G S+GVI E + E+ G+R
Sbjct: 122 TYGEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNR 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV
Sbjct: 182 LRCYVVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV- 300
S+ + ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V
Sbjct: 242 RSNVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSV 301
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344
+D+ V+VP QLSLAIG+ GQN RLA++LTGW IDI +
Sbjct: 302 IDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 345
>gi|256384305|gb|ACU78875.1| transcription elongation factor NusA [Mycoplasma mycoides subsp.
capri str. GM12]
gi|256385138|gb|ACU79707.1| transcription elongation factor NusA [Mycoplasma mycoides subsp.
capri str. GM12]
gi|296455871|gb|ADH22106.1| transcription elongation factor NusA [synthetic Mycoplasma mycoides
JCVI-syn1.0]
Length = 584
Score = 257 bits (657), Expect = 3e-66, Method: Composition-based stats.
Identities = 126/463 (27%), Positives = 234/463 (50%), Gaps = 7/463 (1%)
Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64
N ELL+ + EK I ++ +++ + + +QKA Y T + I+++IN TG I++ +
Sbjct: 3 NGTELLESIKLIEKEKGISKESIINGLKEGLQKAYERFYDTDAIIKIDINENTGLITMHQ 62
Query: 65 LLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLP-PMDFGRVAVQSAKQVIIQK 121
L+VV++ +++ +I+L A+ ++P I IG + P+ +F R+ V +Q+ QK
Sbjct: 63 ELKVVDDEQLDDDWLEITLSKAKLKNPDIQIGDTIYKPIEFSEEFSRMVVNQVRQIFQQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGD 180
+REAER R Y +F GE++ V + N ++D+ + + + +TI+ E + +
Sbjct: 123 IREAERARIYEQFVSLEGEVVQAKVVGMNRENNYVLDINGTTAYLWKSKTINNEIFQINE 182
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
+ YI V +E + Q+ +SRT P F+ KL EVPE+ GIV++KAVSR+PG R+K+A
Sbjct: 183 IIDVYIEVVEKESKLSQISISRTAPNFLTKLIEREVPEVRMGIVEIKAVSREPGKRSKVA 242
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V + +++++P+GA +G+ G+R+ + L+ EKIDI+ W D T++INA+ P V +
Sbjct: 243 VITHNNNVEPIGAIIGVGGNRINRISDILKGEKIDIIRWDEDQITYLINAMTPVKVISIN 302
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
D +++VP QLSLAIG++G +L + L I+I +
Sbjct: 303 KIGDE--YDIVVPDTQLSLAIGKQGVAAKLIASLLKTKINIFSYSTALKENMDILWNGDT 360
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
+ + V I + E + I +A E
Sbjct: 361 TIQEVETNTYTPKTKATKKEEKPVITTTKKPIKQTTKKEENQIDVDALIAFQAEVEHEQE 420
Query: 421 DITLQKKIRELGV-SEELCSIPGIDSKIKVALGENGIKTMEDL 462
++ +++ + E + +++ ++ L E ++T +
Sbjct: 421 LKDQEELLKQESMYKEYENNFNDFENEKEILLAEKQLETQNQI 463
>gi|15595145|ref|NP_212934.1| transcription elongation factor NusA [Borrelia burgdorferi B31]
gi|218249928|ref|YP_002375299.1| transcription elongation protein NusA [Borrelia burgdorferi ZS7]
gi|223889315|ref|ZP_03623902.1| transcription elongation protein NusA [Borrelia burgdorferi 64b]
gi|226321265|ref|ZP_03796793.1| transcription elongation protein NusA [Borrelia burgdorferi Bol26]
gi|3914177|sp|O51740|NUSA_BORBU RecName: Full=Transcription elongation protein nusA
gi|2688748|gb|AAC67154.1| N-utilization substance protein A (nusA) [Borrelia burgdorferi B31]
gi|218165116|gb|ACK75177.1| transcription elongation protein NusA [Borrelia burgdorferi ZS7]
gi|223885236|gb|EEF56339.1| transcription elongation protein NusA [Borrelia burgdorferi 64b]
gi|226233297|gb|EEH32048.1| transcription elongation protein NusA [Borrelia burgdorferi Bol26]
Length = 482
Score = 257 bits (657), Expect = 3e-66, Method: Composition-based stats.
Identities = 122/390 (31%), Positives = 230/390 (58%), Gaps = 7/390 (1%)
Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75
+A ++ + D + + +S+ A + +G+ + ++ + +TGD+S++ ++V+EV++
Sbjct: 12 IANDRGMSIDSIRKTIKESVLIAYKKYFGSNENAFIKFDDDTGDLSVYAKKKIVKEVKDS 71
Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135
+I K + I G + P F R+++Q AKQ ++ E + EFK
Sbjct: 72 LLEILEKDISKEN--IVEGDYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEILSEFK 129
Query: 136 DKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195
K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ + G
Sbjct: 130 SKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYNLNDKIRVLVYNVKKGKNG 189
Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255
+V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDPVG C+
Sbjct: 190 IEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPVGPCI 249
Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPK 314
G +G R+Q+++ EL EKIDI+ +S D F+ ++L P+ + V + DED+ + V+V
Sbjct: 250 GQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPSKIEHVYILDEDLHKALVVVSD 309
Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAH 374
+QLSLAIG+ GQNVRLA++L W ID+ T + + + ++ M D+++
Sbjct: 310 DQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFAEMKANSEFKQETLEM----FDKVMQD 365
Query: 375 LLVAEGFADVEELACVKISEIASIEGFDEE 404
++ E F ++ +++ +K+ + + I +E
Sbjct: 366 VVEEEQFEEISKISDLKLLDPSVISNLSKE 395
>gi|260187857|ref|ZP_05765331.1| transcription elongation factor NusA [Mycobacterium tuberculosis
CPHL_A]
gi|289448503|ref|ZP_06438247.1| N utilization substance protein A nusA [Mycobacterium tuberculosis
CPHL_A]
gi|289421461|gb|EFD18662.1| N utilization substance protein A nusA [Mycobacterium tuberculosis
CPHL_A]
Length = 347
Score = 257 bits (657), Expect = 3e-66, Method: Composition-based stats.
Identities = 129/344 (37%), Positives = 198/344 (57%), Gaps = 31/344 (9%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ A+ ++ I + +L + ++ A R G +D R+EI+ +TG + +
Sbjct: 5 MAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRV------- 57
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
+AR+ D + ++ D P FGR+A +A+QV++Q+ R+AE +R
Sbjct: 58 -------------IARETDEAGNLISEWDD--TPEGFGRIAATTARQVMLQRFRDAENER 102
Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDR 181
Y EF + GEI++G ++R N V+V +G S+GVI E + E+ G+R
Sbjct: 103 TYGEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNR 162
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV
Sbjct: 163 LRCYVVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV 222
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV- 300
S+ + ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V
Sbjct: 223 RSNVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSV 282
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344
+D+ V+VP QLSLAIG+ GQN RLA++LTGW IDI +
Sbjct: 283 IDQTARAARVVVPDFQLSLAIGKDGQNARLAARLTGWRIDIRGD 326
>gi|328955634|ref|YP_004372967.1| NusA antitermination factor [Coriobacterium glomerans PW2]
gi|328455958|gb|AEB07152.1| NusA antitermination factor [Coriobacterium glomerans PW2]
Length = 411
Score = 257 bits (657), Expect = 3e-66, Method: Composition-based stats.
Identities = 139/424 (32%), Positives = 214/424 (50%), Gaps = 48/424 (11%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
++ + EK ID+ ++ + S+ K+ + V I+ TG + ++
Sbjct: 5 MMDALMELCQEKHIDQLYLIDCLEQSLSKSYADILHLEYGAEVTIDRATGKVYVY----- 59
Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDP---LPPMDFGRVAVQSAKQVIIQKVREA 125
++ +P + G + P D R+A Q AK I VR +
Sbjct: 60 -------------ELVPKGEPDEETGEYTEFDKKDVTPKDTSRIAAQHAKAEINAIVRNS 106
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIR----------RDETISRE 174
R++ Y EF D++G+II+GTV + IV + + + R+E + E
Sbjct: 107 AREQIYEEFSDRIGDIITGTVLQSTPDFTIVKIREGVEAELPHFDLRRFENERNERPAGE 166
Query: 175 NLRPGDRVKSYIYDVRREQRGPQ----------VLLSRTHPQFMVKLFHMEVPEIYNGIV 224
R+K+ I DVR Q +++SRTHP + +LF +EVPEIY G V
Sbjct: 167 RYMHNQRLKAVIIDVRDPNSTMQPQRGERSRPPIVISRTHPALIKRLFELEVPEIYEGTV 226
Query: 225 QVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSA 284
+VK+++R+PG R+K+AV S D +DPVGACVG +GSRV+ VV ELR E++D+++W D +
Sbjct: 227 EVKSIAREPGQRSKVAVHSLDDRLDPVGACVGPKGSRVRTVVGELRGERVDVILWDADPS 286
Query: 285 TFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344
FV NAL PA V++V++DE+ VIVP +QLSLAIG+ GQN RLA++LTGW IDI E
Sbjct: 287 VFVANALSPAKVSRVLIDEEKSYAGVIVPDDQLSLAIGKEGQNARLAARLTGWHIDIKNE 346
Query: 345 EEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELA-----CVKISEIASIE 399
+ + K+ I+ DE V+E A + E +IE
Sbjct: 347 -TLAADILKNIPVPAAVDDDLISDDEPRRCQYVSEDNIRCRNQARPGSRYCGVHEQDAIE 405
Query: 400 GFDE 403
G ++
Sbjct: 406 GAED 409
>gi|15842382|ref|NP_337419.1| transcription elongation factor NusA [Mycobacterium tuberculosis
CDC1551]
gi|13882681|gb|AAK47233.1| N utilization substance protein A [Mycobacterium tuberculosis
CDC1551]
Length = 343
Score = 257 bits (657), Expect = 3e-66, Method: Composition-based stats.
Identities = 129/344 (37%), Positives = 198/344 (57%), Gaps = 31/344 (9%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ A+ ++ I + +L + ++ A R G +D R+EI+ +TG + +
Sbjct: 1 MAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRV------- 53
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
+AR+ D + ++ D P FGR+A +A+QV++Q+ R+AE +R
Sbjct: 54 -------------IARETDEAGNLISEWDD--TPEGFGRIAATTARQVMLQRFRDAENER 98
Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDR 181
Y EF + GEI++G ++R N V+V +G S+GVI E + E+ G+R
Sbjct: 99 TYGEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNR 158
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV
Sbjct: 159 LRCYVVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV 218
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV- 300
S+ + ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V
Sbjct: 219 RSNVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSV 278
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344
+D+ V+VP QLSLAIG+ GQN RLA++LTGW IDI +
Sbjct: 279 IDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 322
>gi|209527729|ref|ZP_03276225.1| NusA antitermination factor [Arthrospira maxima CS-328]
gi|209491850|gb|EDZ92209.1| NusA antitermination factor [Arthrospira maxima CS-328]
Length = 415
Score = 257 bits (656), Expect = 4e-66, Method: Composition-based stats.
Identities = 129/406 (31%), Positives = 215/406 (52%), Gaps = 29/406 (7%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARS---------LYGTM--SDIRVEINPET 57
L + ++++ E+++ + V + +++ K + + VE++ E
Sbjct: 9 LKDMIESISTERNLPKQAVEEALREALLKGYERYRRTVQIDTQFSEDYFDNFDVELDVEE 68
Query: 58 GDISLFRL-LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114
+ L +VE+ N QISLK ++ P +G V+ + P +FGR+A
Sbjct: 69 EGFRVLAKNLTIVEQASNQDHQISLKDVQEVAPEAQLGDTVTLDVTPEQNEFGRMAAIQT 128
Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRD 168
KQV+ QK+R+ +R EF + G ++ V R E +VI+ + + + +
Sbjct: 129 KQVLAQKLRDKQRKMIQDEFAEHEGTVLQARVLRFERQSVIMAVSSVYGQPEVEAELPKR 188
Query: 169 ETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227
E + ++N R + Y+ V + QRGPQ+++SR+ +V LF EVPEI + +V++
Sbjct: 189 EQLPKDNYRANATFRVYLKRVSQGSQRGPQLIVSRSDAGLVVYLFANEVPEIEDEVVRIV 248
Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280
AV+R+ G R K+AV + D +DPVGAC+G RGSR+Q VV ELR EKID++ WS
Sbjct: 249 AVAREANPPSNHVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWS 308
Query: 281 PDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
PD + ++ NAL PA V +V ++ + R V+V ++QLSLAIG+ GQNVRLA++LTGW I
Sbjct: 309 PDPSIYIANALSPARVDEVRLVNPEERRAHVLVAEDQLSLAIGKEGQNVRLAARLTGWKI 368
Query: 340 DIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVE 385
DI + + + R V E + + A ++++
Sbjct: 369 DIKDAAKYDAAAEDEMEARRFQGQLTAEVSEAESLDMEATETSEIQ 414
>gi|315225958|ref|ZP_07867746.1| transcription termination factor NusA [Parascardovia denticolens
DSM 10105]
gi|315120090|gb|EFT83222.1| transcription termination factor NusA [Parascardovia denticolens
DSM 10105]
Length = 385
Score = 257 bits (656), Expect = 4e-66, Method: Composition-based stats.
Identities = 115/329 (34%), Positives = 188/329 (57%), Gaps = 15/329 (4%)
Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75
+A E+ ID + + + ++++++ A RVE++ G +++ E+ +E
Sbjct: 24 LAAEQGIDAERLDAALSEALRLAYLKNPHAAKHARVELDERAGSFTVWAQDEIPQEPT-- 81
Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135
A D P +G D P DFGR A A+QVI R+A D+ + F
Sbjct: 82 --------AEDPHPRPALGEEYDD--TPEDFGRQAAYIARQVITALFRKAADDKIFGAFA 131
Query: 136 DKVGEIISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193
+ G++I+G V++ + GN+ + +G+ + ++ R E + E R G R++ Y+ V R
Sbjct: 132 GQKGKLITGVVQQDSGDRGNLHIAVGDVEAILPRREQVPGERFRHGQRIRVYVVSVNRGL 191
Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGA 253
+GP++++SR+HP+ + +LF EVPE+ +G VQ+ +++R+ G R K+AV ++ ++P GA
Sbjct: 192 KGPEIIVSRSHPELIRRLFEREVPELASGAVQIMSIAREAGERTKIAVRANAQGVNPKGA 251
Query: 254 CVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVIV 312
+G G RV+AV+ L DEKIDIV WS D A FV AL PA KV + E ++
Sbjct: 252 LIGPAGQRVRAVMENLGDEKIDIVDWSEDPAKFVGAALSPAHAVKVTVVSEKNKTTLALI 311
Query: 313 PKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
+Q+SLAIG+ GQN RLA++LTGW I I
Sbjct: 312 HDDQMSLAIGKEGQNARLAAKLTGWKIAI 340
>gi|111115635|ref|YP_710253.1| transcription elongation factor NusA [Borrelia afzelii PKo]
gi|216263366|ref|ZP_03435361.1| transcription elongation protein NusA [Borrelia afzelii ACA-1]
gi|110890909|gb|ABH02077.1| N-utilization substance protein A [Borrelia afzelii PKo]
gi|215980210|gb|EEC21031.1| transcription elongation protein NusA [Borrelia afzelii ACA-1]
Length = 482
Score = 257 bits (656), Expect = 4e-66, Method: Composition-based stats.
Identities = 123/396 (31%), Positives = 233/396 (58%), Gaps = 7/396 (1%)
Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74
++A ++S+ + + + +S+ A + +G+ + ++ + +TGD+ ++ ++VEEV++
Sbjct: 11 SIANDRSMSIESIRKTIKESVLIAYKKYFGSNENAFIKFDDDTGDLIVYAKKKIVEEVKD 70
Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134
+I K + I G + P F R+++Q AKQ ++ E + EF
Sbjct: 71 SLLEILEKDISREN--IVEGDYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEILSEF 128
Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194
K K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ +
Sbjct: 129 KSKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYSLNDKIRVLVYNVKKGKN 188
Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254
G +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDPVG C
Sbjct: 189 GIEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPVGPC 248
Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVP 313
+G +G R+Q+++ EL EKIDI+ +S D F+ ++L P+ + V + DED+ + V+V
Sbjct: 249 IGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPSKIEHVYILDEDLHKALVVVS 308
Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIA 373
+QLSLAIG+ GQNVRLA++L W ID+ T + + + ++ M D+++
Sbjct: 309 DDQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFAEMKANSEFKQETLEM----FDKVMQ 364
Query: 374 HLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409
++ E F ++ +++ +K+ + + I +E +I
Sbjct: 365 DVVEEEQFEEISKISDLKLLDSSVISNLSKEGLNDI 400
>gi|301320952|gb|ADK69595.1| transcription termination factor NusA [Mycoplasma mycoides subsp.
mycoides SC str. Gladysdale]
Length = 584
Score = 256 bits (655), Expect = 5e-66, Method: Composition-based stats.
Identities = 125/455 (27%), Positives = 230/455 (50%), Gaps = 7/455 (1%)
Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64
N ELL+ + EK I ++ +++ + + +QKA Y T + I+++IN TG I++ +
Sbjct: 3 NGTELLESIKLIEKEKGISKESIINGLKEGLQKAYERFYDTDAIIKIDINENTGLITMHQ 62
Query: 65 LLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLP-PMDFGRVAVQSAKQVIIQK 121
L+VV++ +++ +I+L A+ ++P I IG + P+ +F R+ V +Q+ QK
Sbjct: 63 ELKVVDDEQLDDDWLEITLSKAKLKNPDIQIGDTIYKPIEFSEEFSRMVVNQVRQIFQQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISG-TVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
+REAER R Y +F GE++ V N ++D+ + + + +TI+ E + +
Sbjct: 123 IREAERARIYEQFVSLEGEVVQAKIVGMNRENNYVLDINGTTAYLWKSKTINNEIFQINE 182
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
+ YI V +E + Q+ +SRT P F+ KL EVPE+ GIV++KAVSR+PG R+K+A
Sbjct: 183 IIDVYIEVVEKESKLSQISISRTAPNFLTKLIEREVPEVRMGIVEIKAVSREPGKRSKVA 242
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V + +++++P+GA +G+ G+R+ + L+ EKIDI+ W D T++INA+ P V +
Sbjct: 243 VITHNNNVEPIGAIIGVGGNRINRISDILKGEKIDIIRWDEDQITYLINAMTPVKVISIN 302
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
D +++VP QLSLAIG++G +L + L I+I +
Sbjct: 303 KIGDE--YDIVVPDTQLSLAIGKQGVAAKLIASLLKTKINIFSYSTALKENMDILWNGDT 360
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
+ I + V + + E + I +A E
Sbjct: 361 TKQEVETNTYIPKTKTTKKEEKPVITTIKKPVKQTIKKEENQIDVDALIAFQAEVEHEQE 420
Query: 421 DITLQKKIRELGV-SEELCSIPGIDSKIKVALGEN 454
++ +++ + E + +++ ++ L E
Sbjct: 421 LKDQEELLKQEYIYKEYENNFNDFENEKEIVLAEK 455
>gi|260201972|ref|ZP_05769463.1| transcription elongation factor NusA [Mycobacterium tuberculosis
T46]
gi|289444392|ref|ZP_06434136.1| transcription termination factor NusA [Mycobacterium tuberculosis
T46]
gi|289417311|gb|EFD14551.1| transcription termination factor NusA [Mycobacterium tuberculosis
T46]
Length = 347
Score = 256 bits (655), Expect = 5e-66, Method: Composition-based stats.
Identities = 129/344 (37%), Positives = 198/344 (57%), Gaps = 31/344 (9%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ A+ ++ I + +L + ++ A R G +D R+EI+ +TG + +
Sbjct: 5 MAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRV------- 57
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
+AR+ D + ++ D P FGR+A +A+QV++Q+ R+AE +R
Sbjct: 58 -------------IARETDEAGNLISEWDD--TPEGFGRIAATTARQVMLQRFRDAENER 102
Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDR 181
Y EF + GEI++G ++R N V+V +G S+GVI E + E+ G+R
Sbjct: 103 TYGEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPATEQVPGESYEHGNR 162
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV
Sbjct: 163 LRCYVVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV 222
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV- 300
S+ + ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V
Sbjct: 223 RSNVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSV 282
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344
+D+ V+VP QLSLAIG+ GQN RLA++LTGW IDI +
Sbjct: 283 IDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 326
>gi|300866111|ref|ZP_07110839.1| transcription elongation factor NusA [Oscillatoria sp. PCC 6506]
gi|300335907|emb|CBN55997.1| transcription elongation factor NusA [Oscillatoria sp. PCC 6506]
Length = 427
Score = 256 bits (655), Expect = 6e-66, Method: Composition-based stats.
Identities = 133/425 (31%), Positives = 209/425 (49%), Gaps = 34/425 (8%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARS--------LYGTM--SDIRVEINPETG 58
L + D ++ E+++ + V + + +++ K + + VE++ E
Sbjct: 9 LKDMVDVISKERNLPKHAVQAALREALVKGYERYRRTQRLDHFSEEYFDNFEVELDIEEE 68
Query: 59 DISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAKQ 116
+ +VEEV N QI+L ++ +G V + P DFGR+A KQ
Sbjct: 69 GFRVLATKSIVEEVSNPDHQIALLEVQEVATEAQLGDTVILDVTPDQNDFGRMAAIQTKQ 128
Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDET 170
V+ QK+R+ +R EFKD ++ V R E + I+ + + + + E
Sbjct: 129 VLAQKLRDQQRKMIQEEFKDLEETVLQARVLRFERQSAILAVSSGFGQPEVEAELPKREQ 188
Query: 171 ISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAV 229
+ +N R K Y+ V RGPQ+++SR +V LF EVPEI +G+V++ AV
Sbjct: 189 LPNDNYRANATFKVYLKKVGEGATRGPQLVVSRADAGLVVYLFANEVPEIEDGVVRIVAV 248
Query: 230 SRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPD 282
+R+ G R K+AV + D +DPVGAC+G RGSR+Q VV ELR EKID++ WSPD
Sbjct: 249 AREANPPSRHVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWSPD 308
Query: 283 SATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
AT++ NAL PA V +V + + R ++V ++QLSLAIG+ GQNVRLA++LTGW IDI
Sbjct: 309 PATYIANALSPARVDEVRLVAPEGRRAHILVAEDQLSLAIGKEGQNVRLAARLTGWKIDI 368
Query: 342 ITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF 401
+ + + + F + E + + E
Sbjct: 369 KDIAKYDRAAEDSKLAAEASRLALAAEE-------YESDFDEDSEETDESDFDESDRELD 421
Query: 402 DEETA 406
+ ETA
Sbjct: 422 ETETA 426
>gi|15609978|ref|NP_217357.1| transcription elongation factor NusA [Mycobacterium tuberculosis
H37Rv]
gi|31794018|ref|NP_856511.1| transcription elongation factor NusA [Mycobacterium bovis
AF2122/97]
gi|121638721|ref|YP_978945.1| transcription elongation factor NusA [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|148662682|ref|YP_001284205.1| transcription elongation factor NusA [Mycobacterium tuberculosis
H37Ra]
gi|148824031|ref|YP_001288785.1| transcription elongation factor NusA [Mycobacterium tuberculosis
F11]
gi|167967194|ref|ZP_02549471.1| transcription elongation factor NusA [Mycobacterium tuberculosis
H37Ra]
gi|215404813|ref|ZP_03416994.1| transcription elongation factor NusA [Mycobacterium tuberculosis
02_1987]
gi|215412673|ref|ZP_03421391.1| transcription elongation factor NusA [Mycobacterium tuberculosis
94_M4241A]
gi|215431783|ref|ZP_03429702.1| transcription elongation factor NusA [Mycobacterium tuberculosis
EAS054]
gi|215447095|ref|ZP_03433847.1| transcription elongation factor NusA [Mycobacterium tuberculosis
T85]
gi|218754589|ref|ZP_03533385.1| transcription elongation factor NusA [Mycobacterium tuberculosis GM
1503]
gi|224991213|ref|YP_002645902.1| transcription elongation factor [Mycobacterium bovis BCG str. Tokyo
172]
gi|253798073|ref|YP_003031074.1| N utilization substance protein A nusA [Mycobacterium tuberculosis
KZN 1435]
gi|254232936|ref|ZP_04926263.1| N utilization substance protein A nusA [Mycobacterium tuberculosis
C]
gi|254365487|ref|ZP_04981532.1| N utilization substance protein A nusA [Mycobacterium tuberculosis
str. Haarlem]
gi|254551905|ref|ZP_05142352.1| transcription elongation factor NusA [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|260206152|ref|ZP_05773643.1| transcription elongation factor NusA [Mycobacterium tuberculosis
K85]
gi|289553371|ref|ZP_06442581.1| N utilization substance protein A nusA [Mycobacterium tuberculosis
KZN 605]
gi|289575542|ref|ZP_06455769.1| N utilization substance protein A nusA [Mycobacterium tuberculosis
K85]
gi|289746639|ref|ZP_06506017.1| transcription elongation factor NusA [Mycobacterium tuberculosis
02_1987]
gi|289754949|ref|ZP_06514327.1| transcription elongation factor NusA [Mycobacterium tuberculosis
EAS054]
gi|289758961|ref|ZP_06518339.1| transcription elongation factor NusA [Mycobacterium tuberculosis
T85]
gi|289763017|ref|ZP_06522395.1| N utilization substance protein A nusA [Mycobacterium tuberculosis
GM 1503]
gi|294994068|ref|ZP_06799759.1| transcription elongation factor NusA [Mycobacterium tuberculosis
210]
gi|297635454|ref|ZP_06953234.1| transcription elongation factor NusA [Mycobacterium tuberculosis
KZN 4207]
gi|297732453|ref|ZP_06961571.1| transcription elongation factor NusA [Mycobacterium tuberculosis
KZN R506]
gi|298526309|ref|ZP_07013718.1| N utilization substance protein A nusA [Mycobacterium tuberculosis
94_M4241A]
gi|306777125|ref|ZP_07415462.1| N utilization substance protein A nusA [Mycobacterium tuberculosis
SUMu001]
gi|306781031|ref|ZP_07419368.1| N utilization substance protein A nusA [Mycobacterium tuberculosis
SUMu002]
gi|306785669|ref|ZP_07423991.1| N utilization substance protein A nusA [Mycobacterium tuberculosis
SUMu003]
gi|306789709|ref|ZP_07428031.1| N utilization substance protein A nusA [Mycobacterium tuberculosis
SUMu004]
gi|306794342|ref|ZP_07432644.1| N utilization substance protein A nusA [Mycobacterium tuberculosis
SUMu005]
gi|306798766|ref|ZP_07437068.1| N utilization substance protein A nusA [Mycobacterium tuberculosis
SUMu006]
gi|306804612|ref|ZP_07441280.1| N utilization substance protein A nusA [Mycobacterium tuberculosis
SUMu008]
gi|306807354|ref|ZP_07444022.1| N utilization substance protein A nusA [Mycobacterium tuberculosis
SUMu007]
gi|306968905|ref|ZP_07481566.1| N utilization substance protein A nusA [Mycobacterium tuberculosis
SUMu009]
gi|306973241|ref|ZP_07485902.1| N utilization substance protein A nusA [Mycobacterium tuberculosis
SUMu010]
gi|307080950|ref|ZP_07490120.1| N utilization substance protein A nusA [Mycobacterium tuberculosis
SUMu011]
gi|307085545|ref|ZP_07494658.1| N utilization substance protein A nusA [Mycobacterium tuberculosis
SUMu012]
gi|313659785|ref|ZP_07816665.1| transcription elongation factor NusA [Mycobacterium tuberculosis
KZN V2475]
gi|61229169|sp|P0A5M2|NUSA_MYCTU RecName: Full=Transcription elongation protein nusA
gi|61229170|sp|P0A5M3|NUSA_MYCBO RecName: Full=Transcription elongation protein nusA
gi|3261746|emb|CAB08449.1| PROBABLE N UTILIZATION SUBSTANCE PROTEIN A NUSA [Mycobacterium
tuberculosis H37Rv]
gi|31619612|emb|CAD95051.1| PROBABLE N UTILIZATION SUBSTANCE PROTEIN A NUSA [Mycobacterium
bovis AF2122/97]
gi|121494369|emb|CAL72850.1| Probable N utilization substance protein A nusA [Mycobacterium
bovis BCG str. Pasteur 1173P2]
gi|124601995|gb|EAY61005.1| N utilization substance protein A nusA [Mycobacterium tuberculosis
C]
gi|134151000|gb|EBA43045.1| N utilization substance protein A nusA [Mycobacterium tuberculosis
str. Haarlem]
gi|148506834|gb|ABQ74643.1| transcription elongation factor NusA [Mycobacterium tuberculosis
H37Ra]
gi|148722558|gb|ABR07183.1| N utilization substance protein A nusA [Mycobacterium tuberculosis
F11]
gi|224774328|dbj|BAH27134.1| transcription elongation factor [Mycobacterium bovis BCG str. Tokyo
172]
gi|253319576|gb|ACT24179.1| N utilization substance protein A nusA [Mycobacterium tuberculosis
KZN 1435]
gi|289438003|gb|EFD20496.1| N utilization substance protein A nusA [Mycobacterium tuberculosis
KZN 605]
gi|289539973|gb|EFD44551.1| N utilization substance protein A nusA [Mycobacterium tuberculosis
K85]
gi|289687167|gb|EFD54655.1| transcription elongation factor NusA [Mycobacterium tuberculosis
02_1987]
gi|289695536|gb|EFD62965.1| transcription elongation factor NusA [Mycobacterium tuberculosis
EAS054]
gi|289710523|gb|EFD74539.1| N utilization substance protein A nusA [Mycobacterium tuberculosis
GM 1503]
gi|289714525|gb|EFD78537.1| transcription elongation factor NusA [Mycobacterium tuberculosis
T85]
gi|298496103|gb|EFI31397.1| N utilization substance protein A nusA [Mycobacterium tuberculosis
94_M4241A]
gi|308214494|gb|EFO73893.1| N utilization substance protein A nusA [Mycobacterium tuberculosis
SUMu001]
gi|308326139|gb|EFP14990.1| N utilization substance protein A nusA [Mycobacterium tuberculosis
SUMu002]
gi|308329669|gb|EFP18520.1| N utilization substance protein A nusA [Mycobacterium tuberculosis
SUMu003]
gi|308333808|gb|EFP22659.1| N utilization substance protein A nusA [Mycobacterium tuberculosis
SUMu004]
gi|308337334|gb|EFP26185.1| N utilization substance protein A nusA [Mycobacterium tuberculosis
SUMu005]
gi|308340977|gb|EFP29828.1| N utilization substance protein A nusA [Mycobacterium tuberculosis
SUMu006]
gi|308346277|gb|EFP35128.1| N utilization substance protein A nusA [Mycobacterium tuberculosis
SUMu007]
gi|308348792|gb|EFP37643.1| N utilization substance protein A nusA [Mycobacterium tuberculosis
SUMu008]
gi|308353518|gb|EFP42369.1| N utilization substance protein A nusA [Mycobacterium tuberculosis
SUMu009]
gi|308357359|gb|EFP46210.1| N utilization substance protein A nusA [Mycobacterium tuberculosis
SUMu010]
gi|308361312|gb|EFP50163.1| N utilization substance protein A nusA [Mycobacterium tuberculosis
SUMu011]
gi|308364913|gb|EFP53764.1| N utilization substance protein A nusA [Mycobacterium tuberculosis
SUMu012]
gi|323718540|gb|EGB27710.1| N utilization substance protein A nusA [Mycobacterium tuberculosis
CDC1551A]
gi|326904454|gb|EGE51387.1| N utilization substance protein A nusA [Mycobacterium tuberculosis
W-148]
gi|328457846|gb|AEB03269.1| N utilization substance protein A nusA [Mycobacterium tuberculosis
KZN 4207]
Length = 347
Score = 256 bits (654), Expect = 6e-66, Method: Composition-based stats.
Identities = 129/344 (37%), Positives = 198/344 (57%), Gaps = 31/344 (9%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ A+ ++ I + +L + ++ A R G +D R+EI+ +TG + +
Sbjct: 5 MAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRV------- 57
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
+AR+ D + ++ D P FGR+A +A+QV++Q+ R+AE +R
Sbjct: 58 -------------IARETDEAGNLISEWDD--TPEGFGRIAATTARQVMLQRFRDAENER 102
Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDR 181
Y EF + GEI++G ++R N V+V +G S+GVI E + E+ G+R
Sbjct: 103 TYGEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNR 162
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV
Sbjct: 163 LRCYVVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV 222
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV- 300
S+ + ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V
Sbjct: 223 RSNVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSV 282
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344
+D+ V+VP QLSLAIG+ GQN RLA++LTGW IDI +
Sbjct: 283 IDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 326
>gi|284052678|ref|ZP_06382888.1| transcription elongation factor NusA [Arthrospira platensis str.
Paraca]
gi|291568133|dbj|BAI90405.1| transcription termination factor NusA [Arthrospira platensis
NIES-39]
Length = 415
Score = 256 bits (654), Expect = 7e-66, Method: Composition-based stats.
Identities = 127/394 (32%), Positives = 210/394 (53%), Gaps = 29/394 (7%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARS---------LYGTM--SDIRVEINPET 57
L + ++++ E+++ + V + +++ K + + VE++ E
Sbjct: 9 LKDMIESISTERNLPKQAVEEALREALLKGYERYRRTVQIDTQFTEDYFDNFDVELDVEE 68
Query: 58 GDISLFRL-LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114
+ L +VE+ N QISLK ++ P ++G V+ + P +FGR+A
Sbjct: 69 EGFRVLAKNLTIVEQASNQDHQISLKDVQEVAPEAELGDTVTLDVTPEQNEFGRMAAIQT 128
Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRD 168
KQV+ QK+R+ +R EF + G ++ V R E +VI+ + + + +
Sbjct: 129 KQVLAQKLRDKQRKMIQDEFAEHEGTVLQARVLRFERQSVIMAVSSVYGQPEVEAELPKR 188
Query: 169 ETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227
E + ++N R + Y+ V + QRGPQ+++SR+ +V LF EVPEI + +V++
Sbjct: 189 EQLPKDNYRANATFRVYLKRVSQGSQRGPQLIVSRSDAGLVVYLFANEVPEIEDEVVRIV 248
Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280
AV+R+ G R K+AV + D +DPVGAC+G RGSR+Q VV ELR EKID++ WS
Sbjct: 249 AVAREANPPSNYVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWS 308
Query: 281 PDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
PD + ++ NAL PA V +V ++ + R V+V ++QLSLAIG+ GQNVRLA++LTGW I
Sbjct: 309 PDPSIYIANALSPARVDEVRLVNPEERRAHVLVAEDQLSLAIGKEGQNVRLAARLTGWKI 368
Query: 340 DIITEEEDSINRQKDFNERTQFFMQAINVDEIIA 373
DI + + + + V E +
Sbjct: 369 DIKDVAKYDAAAEDEKVAQEFQGQLTGEVSEEES 402
>gi|325138660|gb|EGC61216.1| Transcription elongation protein nusA [Neisseria meningitidis
ES14902]
Length = 277
Score = 255 bits (652), Expect = 1e-65, Method: Composition-based stats.
Identities = 115/274 (41%), Positives = 172/274 (62%), Gaps = 9/274 (3%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66
E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR
Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63
Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++
Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180
R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD
Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 183
Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK
Sbjct: 184 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 243
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDE 272
+AV ++D IDP G C+G+RGSRV AV EL E
Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGE 277
>gi|227495147|ref|ZP_03925463.1| transcription termination factor NusA [Actinomyces coleocanis DSM
15436]
gi|226831599|gb|EEH63982.1| transcription termination factor NusA [Actinomyces coleocanis DSM
15436]
Length = 343
Score = 255 bits (652), Expect = 1e-65, Method: Composition-based stats.
Identities = 116/363 (31%), Positives = 199/363 (54%), Gaps = 24/363 (6%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ V ID ++ + D++ K + G++ + R+EI+ +TG +++
Sbjct: 1 MSALREVESTLEIDGITLVKAIEDALLKVYHKMPGSIKEARIEIDRKTGKVAVMA--TEF 58
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
++ +N + P +FGR+A +A+ +I Q++REA+ +
Sbjct: 59 DDDDNPIGE--------------------FDDTPKEFGRIATATARSIITQRIREADDSK 98
Query: 130 QYLEFKDKVGEIISGTVK-RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188
EF++K G ++ GTV+ ++ +G + ++ E + E G +++Y+ +
Sbjct: 99 VLGEFRNKTGTVVVGTVEAHTNPHFTLLRVGEFEAILPESEKVPGETYEHGKVIRAYVLE 158
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248
V R +RG ++ +SR+HP F+ LF EVPEI G+V++K+V+R+ G R+K+AV +++ I
Sbjct: 159 VTRGERGARITVSRSHPNFVEALFAREVPEIAQGLVEIKSVAREAGHRSKIAVAATEEGI 218
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE-DVGR 307
+ GAC+G G RV+AV+TEL+ EKIDIV +S D A F+ N+L PA V+ V +D +
Sbjct: 219 NAKGACIGPMGRRVRAVMTELQGEKIDIVDYSTDPARFIANSLSPARVSTVTIDSLPEKK 278
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
VIVP Q SLAIGR GQN RLA++L G+ IDI ++ E R ++N
Sbjct: 279 ATVIVPDFQFSLAIGREGQNARLAARLCGFHIDIHSDTESGYGVMASDVSRPDVSNASLN 338
Query: 368 VDE 370
++
Sbjct: 339 EED 341
>gi|203288228|ref|YP_002223243.1| N-utilization substance protein A [Borrelia recurrentis A1]
gi|201085448|gb|ACH95022.1| N-utilization substance protein A [Borrelia recurrentis A1]
Length = 494
Score = 254 bits (650), Expect = 2e-65, Method: Composition-based stats.
Identities = 132/424 (31%), Positives = 241/424 (56%), Gaps = 15/424 (3%)
Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70
Q+ +A E+ + D + + +S+ A + +GT + ++ + TGD+ ++ +V+
Sbjct: 20 QMIANIASERGMSIDAIRKTVRESVIIAYKKYFGTSDNALIKFDDNTGDLIVYSKKRIVD 79
Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130
EV+N +I + A+ + V + P F R+++Q AKQ ++ E +
Sbjct: 80 EVKNNVMEILVDDAKTF--EVVDNEYVYVEINPKIFDRLSIQVAKQRTKSDLQGIEDNEL 137
Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190
YLEFK K+ +I+ G V++ G++ V+LG++DGVI + RE D+V+ +Y V+
Sbjct: 138 YLEFKHKLHKIVIGYVQQNRNGDLYVNLGSTDGVIPKKYQSPREVYSLNDKVRVLVYSVK 197
Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250
+ + G +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S +D
Sbjct: 198 KGRNGIEVILSRTHPKFIAELLALEIPEIEEGIIKIHKIVRDPGYRTKVAVYSEKEEVDS 257
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK-VVLDEDVGRIE 309
VG C+G +G R+Q+++ EL EKIDI+ +S D F+ ++L PA + ++DED+ +
Sbjct: 258 VGPCIGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPAKIDNVYIIDEDLHKAL 317
Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVD 369
V+V +QLSLAIG+ GQNVRLA++L W ID+ T + + + ++ F M D
Sbjct: 318 VVVSDDQLSLAIGKMGQNVRLANRLLDWAIDVKTNSQFAEMKASGEFKQDTFEM----FD 373
Query: 370 EIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIR 429
+II + + F ++ +++ +K+ D++ ++ R + ++ + K+
Sbjct: 374 KIIQDNVQEDEFEEINKISELKV--------LDDDIVAKLIQRDLDDIDNFLNASEDKLF 425
Query: 430 ELGV 433
ELG+
Sbjct: 426 ELGI 429
>gi|203284696|ref|YP_002222436.1| N-utilization substance protein A [Borrelia duttonii Ly]
gi|201084139|gb|ACH93730.1| N-utilization substance protein A [Borrelia duttonii Ly]
Length = 494
Score = 254 bits (650), Expect = 2e-65, Method: Composition-based stats.
Identities = 132/424 (31%), Positives = 241/424 (56%), Gaps = 15/424 (3%)
Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70
Q+ +A E+ + D + + +S+ A + +GT + ++ + TGD+ ++ +V+
Sbjct: 20 QMIANIASERGMSIDAIRKTVRESVIIAYKKYFGTSDNALIKFDDNTGDLIVYSKKRIVD 79
Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130
EV+N +I + A+ + V + P F R+++Q AKQ ++ E +
Sbjct: 80 EVKNNVMEILVDDAKTF--EVVDNEYVYVEINPKIFDRLSIQVAKQRTKSDLQGIEDNEL 137
Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190
YLEFK K+ +I+ G V++ G++ V+LG++DGVI + RE D+V+ +Y V+
Sbjct: 138 YLEFKHKLHKIVIGYVQQNRNGDLYVNLGSTDGVIPKKYQSPREVYSLNDKVRVLVYSVK 197
Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250
+ + G +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S +D
Sbjct: 198 KGRNGIEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRTKVAVYSEKEEVDS 257
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK-VVLDEDVGRIE 309
VG C+G +G R+Q+++ EL EKIDI+ +S D F+ ++L PA + ++DED+ +
Sbjct: 258 VGPCIGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPAKIDNVYIIDEDLHKAL 317
Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVD 369
V+V +QLSLAIG+ GQNVRLA++L W ID+ T + + + ++ F M D
Sbjct: 318 VVVSDDQLSLAIGKMGQNVRLANRLLDWAIDVKTNSQFAEMKASGEFKQDTFEM----FD 373
Query: 370 EIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIR 429
+II + + F ++ +++ +K+ D++ ++ R + ++ + K+
Sbjct: 374 KIIQDNVQEDEFEEINKISELKV--------LDDDIVAKLIQRDLDDIDNFLNASEDKLF 425
Query: 430 ELGV 433
ELG+
Sbjct: 426 ELGI 429
>gi|224532423|ref|ZP_03673051.1| transcription elongation protein NusA [Borrelia burgdorferi
WI91-23]
gi|224512646|gb|EEF83019.1| transcription elongation protein NusA [Borrelia burgdorferi
WI91-23]
Length = 336
Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats.
Identities = 114/327 (34%), Positives = 202/327 (61%), Gaps = 3/327 (0%)
Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75
+A ++ + D + + +S+ A + +G+ + ++ + +TGD+S++ ++V+EV++
Sbjct: 12 IANDRGMSIDSIRKTIKESVLIAYKKYFGSNENAFIKFDDDTGDLSVYAKKKIVKEVKDS 71
Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135
+I K + I G + P F R+++Q AKQ ++ E + EFK
Sbjct: 72 LLEILEKDISKEN--IVEGDYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEILSEFK 129
Query: 136 DKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195
K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ + G
Sbjct: 130 SKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYNLNDKIRVLVYNVKKGKNG 189
Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255
+V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDPVG C+
Sbjct: 190 IEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPVGPCI 249
Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPK 314
G +G R+Q+++ EL EKIDI+ +S D F+ ++L P+ + V + DED+ + V+V
Sbjct: 250 GQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPSKIEHVYILDEDLHKALVVVSD 309
Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDI 341
+QLSLAIG+ GQNVRLA++L W ID+
Sbjct: 310 DQLSLAIGKMGQNVRLANRLLDWAIDV 336
>gi|269123542|ref|YP_003306119.1| NusA antitermination factor [Streptobacillus moniliformis DSM
12112]
gi|268314868|gb|ACZ01242.1| NusA antitermination factor [Streptobacillus moniliformis DSM
12112]
Length = 362
Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats.
Identities = 111/347 (31%), Positives = 192/347 (55%), Gaps = 6/347 (1%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
M S ++ L + + EK I + +L + + A + + ++ +EI+ TGD+
Sbjct: 1 MKSKDKATFLDAIEELEKEKGIQKGDLLERLKTGLLAAYKKDFNDQENLEIEIDQITGDV 60
Query: 61 SLFRLLEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117
+F ++++ V N T +I A++ I +G + L +F R A+Q AK +
Sbjct: 61 KMFCEKLIIDDEVKVYNETTEIPFSKAKNHRKRIKVGDYLKIELNADEFNRNAIQRAKSI 120
Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENL 176
IIQ +RE E++ + +I++ V+R E G++ V + D +I + E S + +
Sbjct: 121 IIQYIREQEKELICKQLTAIEHQIVNVIVRRIEENGSLYVGMNGLDLIIPQRELSSLDKV 180
Query: 177 RPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236
+ GDR+ +YI V R P+V ++R + + KLF EVPEI +GI+ +K ++R+ G +
Sbjct: 181 QVGDRLVAYIRSVDTNGRFPKVDITRIDDKLIHKLFEREVPEIASGIIVIKNIAREVGVK 240
Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296
AK+A++S D +ID G+C+G G R+ ++ EL EKI++V W+ D FV NAL PA +
Sbjct: 241 AKVAIYSEDPNIDLKGSCIGKDGVRINNIINELNGEKIELVEWNADQRIFVKNALYPAEI 300
Query: 297 TKVVL--DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
V + +ED +V V QL+LAIG++G N +LA +L ++I
Sbjct: 301 FSVEIVRNEDEIVAKVEVDPSQLTLAIGKKGVNSKLAGKLCKLRVNI 347
>gi|229818209|ref|ZP_04448491.1| hypothetical protein BIFANG_03506 [Bifidobacterium angulatum DSM
20098]
gi|229784460|gb|EEP20574.1| hypothetical protein BIFANG_03506 [Bifidobacterium angulatum DSM
20098]
Length = 346
Score = 254 bits (649), Expect = 3e-65, Method: Composition-based stats.
Identities = 116/360 (32%), Positives = 199/360 (55%), Gaps = 20/360 (5%)
Query: 7 LEL-LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+EL L +A E+ ID + + ++++++ A R+E++ G +++
Sbjct: 1 MELDLAGIHKLAAEQGIDAETLDDALSEALRLAYLKTPHAAKHARIELDDRAGTFTVWAA 60
Query: 66 LEV--VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
E+ EN P+ +G D P DFGR+A +A+QVI R
Sbjct: 61 DEIPGTPTEENPH------------PAPTLGEEYDD--TPKDFGRLAAATARQVITLLFR 106
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
AE ++ + F + G++I+G V++ + NV + +G+ + ++ R E + E R G+R
Sbjct: 107 HAEDEKIFGAFSGQKGKLITGIVQQDVKDSSNVHIAMGDVEALLPRREQVPGERYRHGER 166
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
++ Y+ +V R +GP++++SR+HP+ + LF EVPE+ +G V + A++R+ G+R K+AV
Sbjct: 167 LRVYVVNVGRGLKGPEIIVSRSHPELVRCLFEREVPELVSGAVSIMAIAREAGARTKIAV 226
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV- 300
++ ++P GA +G G+RV+AV+ L EKIDIV +S D A FV +AL PA+ T V
Sbjct: 227 KANTEGVNPKGALIGPGGARVRAVMENLGQEKIDIVDYSDDPAKFVASALSPAVATGVQI 286
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+ E + +QLSLAIG+ GQN RLA++LTGW I I + E + + + +
Sbjct: 287 ISEKNKTAIAFIHDDQLSLAIGKEGQNARLAAKLTGWKIGIESAETHAKKMAEQTEQADE 346
>gi|78779969|ref|YP_398081.1| transcription elongation factor NusA [Prochlorococcus marinus str.
MIT 9312]
gi|78713468|gb|ABB50645.1| NusA antitermination factor [Prochlorococcus marinus str. MIT 9312]
Length = 468
Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats.
Identities = 122/370 (32%), Positives = 193/370 (52%), Gaps = 31/370 (8%)
Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57
+ + ++ EK + ++V + +++ K + ++ V ++ +
Sbjct: 12 LIEDISEEKKLPPNIVELALREALLKGYEKYRKTFYIGVVEDPFDEEYFNNFDVGLDLDE 71
Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115
+ +VEEVE+ QISL + IG V + P DFGR+A + K
Sbjct: 72 EGYRVLSSKIIVEEVESEDHQISLAEVKQVAEDAQIGDTVVLDVTPEKEDFGRMAASTTK 131
Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169
QV+ QK+R+ +R EF D +++ V R E +VI+ + + + + +
Sbjct: 132 QVLAQKLRDQQRKMIQEEFADLEDPVLTARVIRFERQSVIMGVSSGIGRPEVEAELPKRD 191
Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228
+ +N R K ++ +V ++GPQ+ +SR + +V LF EVPEI G V++ A
Sbjct: 192 QLPNDNYRANATFKVFLKEVSEIARKGPQLFVSRANAGLVVYLFENEVPEIQEGTVKIVA 251
Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281
VSR+ G R K+AV S + +DPVGAC+G RG+R+Q VV ELR EKID++ WS
Sbjct: 252 VSREANPPSRGVGPRTKVAVDSVEQEVDPVGACIGARGARIQQVVNELRGEKIDVIKWSS 311
Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340
D +++N+L PA V +V +D V+VP +QLSLAIGR GQNVRLA++LTGW ID
Sbjct: 312 DPIQYILNSLSPAKVDQVRLVDPAGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371
Query: 341 IITEEEDSIN 350
+ E
Sbjct: 372 VKNSHEYDQK 381
>gi|126697021|ref|YP_001091907.1| transcription elongation factor NusA [Prochlorococcus marinus str.
MIT 9301]
gi|126544064|gb|ABO18306.1| N utilization substance protein A [Prochlorococcus marinus str. MIT
9301]
Length = 467
Score = 253 bits (647), Expect = 4e-65, Method: Composition-based stats.
Identities = 123/370 (33%), Positives = 195/370 (52%), Gaps = 31/370 (8%)
Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57
+ + ++ EK + ++V + + +++ K + S+ V ++ +
Sbjct: 12 LIEDISEEKKLPPNIVEAALREALLKGYEKYRRTFYIGVNEDPFDEEYFSNFDVGLDLDE 71
Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115
+ +VEEVE+ QISL + IG V + P DFGR+A + K
Sbjct: 72 EGYRILSSKIIVEEVESEDHQISLIEVKQVADDAQIGDTVVLDVTPEKEDFGRMAASTTK 131
Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169
QV+ QK+R+ +R EF D +++ V R E +VI+ + + + + +
Sbjct: 132 QVLAQKLRDQQRKMIQEEFADLEDPVLTARVIRFERQSVIMGVSSGIGRPEVEAELPKRD 191
Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228
+ +N R K ++ +V ++GPQ+ +SR + +V LF EVPEI G V++ A
Sbjct: 192 QLPNDNYRANATFKVFLKEVSEIARKGPQLFVSRANAGLVVYLFENEVPEIQEGTVKIVA 251
Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281
VSR+ G R K+AV S ++ +DPVGAC+G RG+R+Q VV ELR EKID++ WS
Sbjct: 252 VSREANPPSRAVGPRTKVAVDSVENEVDPVGACIGARGARIQQVVNELRGEKIDVIKWSS 311
Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340
D +++N+L PA V V +D + V+VP +QLSLAIGR GQNVRLA++LTGW ID
Sbjct: 312 DPIQYILNSLSPAKVDLVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371
Query: 341 IITEEEDSIN 350
+ E
Sbjct: 372 VKNSHEYDQE 381
>gi|187918654|ref|YP_001884220.1| transcription elongation factor NusA [Borrelia hermsii DAH]
gi|119861502|gb|AAX17297.1| N utilization substance protein A [Borrelia hermsii DAH]
Length = 496
Score = 253 bits (647), Expect = 4e-65, Method: Composition-based stats.
Identities = 136/425 (32%), Positives = 242/425 (56%), Gaps = 15/425 (3%)
Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70
Q+ +A E+ + D + + +S+ A + +GT + ++ + +TGD+ ++ ++VE
Sbjct: 21 QMISNIASERGMSIDAIRKTVRESVMIAYKKYFGTSENALIKFDEDTGDLVVYSKKKIVE 80
Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130
EV+N +I ++ + G + P F R+++Q AKQ ++ E +
Sbjct: 81 EVQNDILEILQDDIQEF--EVVEDGYAYIEIDPKIFDRLSIQVAKQRTKSDLQGIEDNEL 138
Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190
YLEFK K+ +I+ G V++ G++ V+LG++DGVI + SRE D+V+ +Y V+
Sbjct: 139 YLEFKHKLHKIVIGYVQQNRNGDLYVNLGSTDGVIPKKYQSSREVYGLNDKVRVLVYSVK 198
Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250
+ + G +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDP
Sbjct: 199 KGKNGIEVVLSRTHPKFIEELLTLEIPEIEEGIIKIHKIVRDPGYRTKVAVYSEKEEIDP 258
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK-VVLDEDVGRIE 309
VG C+G +G R+Q+++ EL EKIDI+ +S D F+ +AL PA + ++DED+ +
Sbjct: 259 VGPCIGQKGVRIQSIIKELEGEKIDIIPYSRDIKEFIRDALTPAKIDNVYIVDEDLHKAL 318
Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVD 369
V+V EQLSLAIG+ GQNVRLA++L W ID+ T + + + ++ F M D
Sbjct: 319 VVVSDEQLSLAIGKMGQNVRLANRLLDWAIDVKTNSQFAEMKASGEFKQETFEM----FD 374
Query: 370 EIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIR 429
+I+ + + F ++ ++ +KI D + ++ + ++ ++ +
Sbjct: 375 KILQDNVQEDEFEEINRISELKI--------LDSDIVDKLIEAGLDDIDNFLDASEENLF 426
Query: 430 ELGVS 434
ELG+S
Sbjct: 427 ELGIS 431
>gi|42560896|ref|NP_975347.1| transcription elongation factor NusA [Mycoplasma mycoides subsp.
mycoides SC str. PG1]
gi|42492393|emb|CAE76989.1| transcriptional terminator [Mycoplasma mycoides subsp. mycoides SC
str. PG1]
Length = 584
Score = 253 bits (647), Expect = 5e-65, Method: Composition-based stats.
Identities = 124/455 (27%), Positives = 229/455 (50%), Gaps = 7/455 (1%)
Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64
N ELL+ + EK I ++ +++ + + +QKA Y T + I+++IN TG I++ +
Sbjct: 3 NGTELLESIKLIEKEKGISKESIINGLKEGLQKAYERFYDTDAIIKIDINENTGLITMHQ 62
Query: 65 LLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLP-PMDFGRVAVQSAKQVIIQK 121
L+VV++ +++ +I+L A+ ++P I I + P+ +F R+ V +Q+ QK
Sbjct: 63 ELKVVDDEQLDDDWLEITLSKAKLKNPDIQIDDTIYKPIEFSEEFSRMVVNQVRQIFQQK 122
Query: 122 VREAERDRQYLEFKDKVGEIISG-TVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
+REAER R Y +F GE++ V N ++D+ + + + +TI+ E + +
Sbjct: 123 IREAERARIYEQFVSLEGEVVQAKIVGMNRENNYVLDINGTTAYLWKSKTINNEIFQINE 182
Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
+ YI V +E + Q+ +SRT P F+ KL EVPE+ GIV++KAVSR+PG R+K+A
Sbjct: 183 IIDVYIEVVEKESKLSQISISRTAPNFLTKLIEREVPEVRMGIVEIKAVSREPGKRSKVA 242
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V + +++++P+GA +G+ G+R+ + L+ EKIDI+ W D T++INA+ P V +
Sbjct: 243 VITHNNNVEPIGAIIGVGGNRINRISDILKGEKIDIIRWDEDQITYLINAMTPVKVISIN 302
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
D +++VP QLSLAIG++G +L + L I+I +
Sbjct: 303 KIGDE--YDIVVPDTQLSLAIGKQGVAAKLIASLLKTKINIFSYSTALKENMDILWNGDT 360
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
+ I + V + + E + I +A E
Sbjct: 361 TKQEVETNTYIPKTKTTKKEEKPVITTIKKPVKQTIKKEENQIDVDALIAFQAEVEHEQE 420
Query: 421 DITLQKKIRELGV-SEELCSIPGIDSKIKVALGEN 454
++ +++ + E + +++ ++ L E
Sbjct: 421 LKDQEELLKQEYIYKEYENNFNDFENEKEIVLAEK 455
>gi|318042328|ref|ZP_07974284.1| transcription elongation factor NusA [Synechococcus sp. CB0101]
Length = 477
Score = 253 bits (646), Expect = 5e-65, Method: Composition-based stats.
Identities = 127/369 (34%), Positives = 191/369 (51%), Gaps = 31/369 (8%)
Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57
+ + ++ EK + VV S + +++ K + S+ V ++ +
Sbjct: 12 LIEDISEEKKLPAQVVESALREALLKGYERYRRTLYLGISEDPFEEDYFSNFDVALDLDE 71
Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115
+ +VEEVE+ QI+L IG V + P DFGR+A + K
Sbjct: 72 EGYRVLASKIIVEEVESEDHQIALAEVMQVAEDAQIGDTVVLDVTPEKEDFGRMAAATTK 131
Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169
QV+ QK+R+ +R EF D +++ V R E +VI+ + + + R +
Sbjct: 132 QVLAQKLRDHQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELPRRD 191
Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228
+ +N R K ++ +V +RGPQ+ +SR + +V LF EVPEI G V++ A
Sbjct: 192 QLPNDNYRANATFKVFLKEVSEIPRRGPQLFVSRANAGLVVYLFENEVPEIQEGSVRIVA 251
Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281
V+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ WS
Sbjct: 252 VAREANPPSRSVGPRTKVAVDSVEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRWSQ 311
Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340
D ++ N+L PA V V +D + V+VP +QLSLAIGR GQNVRLA++LTGW ID
Sbjct: 312 DPGQYIANSLSPARVEAVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371
Query: 341 IITEEEDSI 349
I E
Sbjct: 372 IKNSTEYDQ 380
>gi|148243067|ref|YP_001228224.1| transcription elongation factor NusA [Synechococcus sp. RCC307]
gi|147851377|emb|CAK28871.1| Transcription elongation factor NusA [Synechococcus sp. RCC307]
Length = 471
Score = 253 bits (646), Expect = 6e-65, Method: Composition-based stats.
Identities = 128/376 (34%), Positives = 196/376 (52%), Gaps = 31/376 (8%)
Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPE 56
+ + ++ EK + +VV + + +++ K + S+ V ++ +
Sbjct: 11 ALIEDISEEKKLPANVVEAALREALLKGYERYRRTLYIGISEDPFDEEYFSNFDVGLDLD 70
Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114
+ +VEEVE+ QI L + +G V + P DFGR+A +
Sbjct: 71 EEGYRVLASKIIVEEVESEDHQIGLADVQQVTDDAQLGDTVVLDVTPEKDDFGRMAAATT 130
Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRD 168
KQV+ QK+RE +R EF D +++ V R E +VI+ + + + R
Sbjct: 131 KQVLAQKLREHQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELPRR 190
Query: 169 ETISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227
+ + +N R K ++ +V +RGPQ+ +SR + +V LF EVPEI G V++
Sbjct: 191 DQLPNDNYRANATFKVFLKEVSEIARRGPQLFISRANAGLVVYLFENEVPEIQEGSVRIV 250
Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280
AV+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ WS
Sbjct: 251 AVAREANPPSRAVGPRTKVAVDSVEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRWS 310
Query: 281 PDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
PD ++ N+L PA V V +D + V+VP +QLSLAIGR GQNVRLA++LTGW I
Sbjct: 311 PDPGQYLANSLSPARVDMVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKI 370
Query: 340 DIITEEEDSINRQKDF 355
DI EE + +
Sbjct: 371 DIKNSEEYDQASEDEQ 386
>gi|123969228|ref|YP_001010086.1| transcription elongation factor NusA [Prochlorococcus marinus str.
AS9601]
gi|123199338|gb|ABM70979.1| N utilization substance protein A [Prochlorococcus marinus str.
AS9601]
Length = 467
Score = 253 bits (646), Expect = 6e-65, Method: Composition-based stats.
Identities = 122/370 (32%), Positives = 193/370 (52%), Gaps = 31/370 (8%)
Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57
+ + ++ EK + ++V + +++ K + S+ V ++ +
Sbjct: 12 LIEDISEEKKLPPNIVELALREALLKGYEKYRKTFYIGVNQDPFDEEYFSNFDVGLDLDE 71
Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115
+ +VEEVE+ QISL + IG V + P DFGR+A + K
Sbjct: 72 EGYRILSSKIIVEEVESEDHQISLVEVKQVADDAQIGDTVVLDVTPEKEDFGRMAASTTK 131
Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169
QV+ QK+R+ +R EF D +++ V R E +VI+ + + + + +
Sbjct: 132 QVLAQKLRDQQRKMIQEEFADLEDPVLTARVIRFERQSVIMGVSSGIGRPEVEAELPKRD 191
Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228
+ +N R K ++ +V ++GPQ+ +SR + +V LF EVPEI G V++ A
Sbjct: 192 QLPNDNYRANATFKVFLKEVSEIARKGPQLFVSRANAGLVVYLFENEVPEIQEGTVKIVA 251
Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281
VSR+ G R K+AV S + +DPVGAC+G RG+R+Q VV ELR EKID++ WS
Sbjct: 252 VSREANPPSRAVGPRTKVAVDSVEEEVDPVGACIGARGARIQQVVNELRGEKIDVIKWSS 311
Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340
+ +++N+L PA V +V +D V+VP +QLSLAIGR GQNVRLA++LTGW ID
Sbjct: 312 NPIQYILNSLSPAKVDQVRLVDPAGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371
Query: 341 IITEEEDSIN 350
+ E
Sbjct: 372 VKNSHEYDQE 381
>gi|218960602|ref|YP_001740377.1| transcription elongation factor NusA [Candidatus Cloacamonas
acidaminovorans]
gi|167729259|emb|CAO80170.1| transcription elongation factor NusA [Candidatus Cloacamonas
acidaminovorans]
Length = 411
Score = 253 bits (646), Expect = 6e-65, Method: Composition-based stats.
Identities = 121/417 (29%), Positives = 226/417 (54%), Gaps = 8/417 (1%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
+SAN L+ L A+ K +++D + +++ +++ + + ++V I+ G +
Sbjct: 1 MSANMLDALNKLAAI---KQLNKDTIQTIILEAVTSTLQKRLEPEAGLQVYIDELAGCVK 57
Query: 62 LFRLLEVVEEVENYTCQISLKVAR-DRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
+ VVE E QISL AR D ++ +G + + +F V++ +++I
Sbjct: 58 VKFKSLVVEREEGLG-QISLIDARNDYYHNVQLGEYIEKTMTLSEFEPKIVKTVQKIIQD 116
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPG 179
K+R+ E ++ +F + I++G +K +YG I+D G+ D ++ DE I E R G
Sbjct: 117 KIRQLEEEKIQNDFNKQKHTIVTGKIKAIDDYGGYIIDTGHVDALLPVDEQIENEFYRVG 176
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
D +K+Y+ ++R ++ G ++LSRT+P+F+ KLF E+P I++G ++++ + R+PG R K+
Sbjct: 177 DNIKAYVVNIRTQKDGVVIILSRTNPEFVKKLFEAEIPAIFSGEIKIRKIVREPGIRTKV 236
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
+ + D +DP+ ACVG +G+R+ ++ EL E+IDIV+ S D + NAL K
Sbjct: 237 ELEAEDPKVDPIVACVGPKGTRIDSLRKELHGEQIDIVLHSDDPEKMIENALG-VEGIKR 295
Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
V+ E VI+ + +AIG++G+NV+LA++L G IDI T E +
Sbjct: 296 VIIERNHSASVILDEADKLMAIGKQGKNVKLAAKLVGMKIDIYTMAEFEE-KMAKERRTV 354
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416
+ V IA L G+ V+++ + E+ ++EG ++TA ++ A+ +
Sbjct: 355 SHITELDGVTPKIAETLKQAGYTSVQDIYTASLEELCNLEGMGQKTAERLKEAAKYF 411
>gi|159904155|ref|YP_001551499.1| transcription elongation factor NusA [Prochlorococcus marinus str.
MIT 9211]
gi|159889331|gb|ABX09545.1| N utilization substance protein A [Prochlorococcus marinus str. MIT
9211]
Length = 471
Score = 252 bits (645), Expect = 8e-65, Method: Composition-based stats.
Identities = 135/456 (29%), Positives = 217/456 (47%), Gaps = 35/456 (7%)
Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57
+ D ++ EK + VV + + +++ K + S+ V ++ +
Sbjct: 12 LIDDISEEKKLPAQVVETALREALLKGYERYRRTLYLGINENPFEEEYFSNFDVGLDLDE 71
Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115
+ +V+EVE+ QI+L IG V + P +FGR+A + K
Sbjct: 72 EGYRVLASKIIVDEVESEDHQIALSEVMQVAEDAQIGDTVVLDVTPEKEEFGRMAAATTK 131
Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169
QV+ QK+R+ +R EF D +++ V R E +VI+ + + + R +
Sbjct: 132 QVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELPRRD 191
Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228
+ +N R K ++ +V +RGPQ+ +SR++ +V LF EVPEI G V++ A
Sbjct: 192 QLPNDNYRANATFKVFLKEVSETPRRGPQLFVSRSNAGLVVYLFENEVPEIQEGSVRIVA 251
Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281
V+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ WS
Sbjct: 252 VAREANPPTRAVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRWSA 311
Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340
D ++ N+L PA V V +D + V+VP +QLSLAIGR GQNVRLA++LTGW ID
Sbjct: 312 DPVQYISNSLSPARVEVVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371
Query: 341 IITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEG 400
I +E + + +E E A + + + + +
Sbjct: 372 IKNSQEYDQESEDSAVAELISQRE----EEESLQREAEERLAAEQAARAEEDARLRELYP 427
Query: 401 FDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE 436
E+ I+ E E ++ + G+S E
Sbjct: 428 LPEDDEENIEESTTELEELPISENEEAKQNEGLSNE 463
>gi|158334115|ref|YP_001515287.1| transcription elongation factor NusA [Acaryochloris marina
MBIC11017]
gi|158304356|gb|ABW25973.1| transcription termination factor NusA [Acaryochloris marina
MBIC11017]
Length = 452
Score = 252 bits (644), Expect = 1e-64, Method: Composition-based stats.
Identities = 127/396 (32%), Positives = 203/396 (51%), Gaps = 30/396 (7%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARS-----------LYGTMS--DIRVEINP 55
L ++ + ++ E+++ + V + + +++ K + + VE++
Sbjct: 9 LAEMINVISRERNLPKPAVQAALQEALLKGYERYRRTLLLDSGAQFDEEYFYNFDVELDV 68
Query: 56 ETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQS 113
E + +V+EVE+ QI+L R+ P +G V + P +FGR+A
Sbjct: 69 EEEGFLVLATKMIVDEVESTDHQIALTEVREVAPEAQLGDTVVLDVTPEQNEFGRMAAIQ 128
Query: 114 AKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRR 167
KQV+ QK+R+ +R EF+D ++ V R E +VI+ + + + +
Sbjct: 129 TKQVLSQKLRDQQRKLIQEEFQDLEKTVLQARVLRFERRSVIMAVTSAFGQPEVEAELPK 188
Query: 168 DETISRENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQV 226
E + +N R K ++ V RGPQ+++SR +V LF EVPEI + +V++
Sbjct: 189 REQLPNDNYRANATFKVFLKRVADGPHRGPQLVVSRADAGLVVYLFANEVPEIEDEVVRI 248
Query: 227 KAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVW 279
AV+R+ G R K+AV + + +DPVGAC+G RGSR+QAVV ELR EKID++ W
Sbjct: 249 VAVAREANPPSRQVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGEKIDVIRW 308
Query: 280 SPDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338
SPD AT++ NAL PA V V +D + + V+V ++QLSLAIG+ GQNVRLA++LTGW
Sbjct: 309 SPDPATYIANALSPARVDAVRLIDTEERQAHVLVAEDQLSLAIGKEGQNVRLAARLTGWK 368
Query: 339 IDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAH 374
IDI + Q + I
Sbjct: 369 IDIKDIANYDQEAEDLQLSELQAQKVDEDETAEIEQ 404
>gi|87125354|ref|ZP_01081200.1| NusA antitermination factor [Synechococcus sp. RS9917]
gi|86167123|gb|EAQ68384.1| NusA antitermination factor [Synechococcus sp. RS9917]
Length = 463
Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats.
Identities = 135/455 (29%), Positives = 214/455 (47%), Gaps = 43/455 (9%)
Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57
+ D ++ EK + VV + + +++ K + S+ V ++ E
Sbjct: 12 LIDDISEEKKLPPQVVEAALREALLKGYERYRRTLYLGISDDPFDEEYFSNFDVALDLEE 71
Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115
+ +VEEVE+ QI+L +G V + P DFGR+A + K
Sbjct: 72 EGYRVLASKIIVEEVESDDHQIALAEVMQVADDAQVGDTVVLDVTPEKEDFGRMAAATTK 131
Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169
QV+ QK+R+ +R EF D +++ V R E +VI+ + + + R +
Sbjct: 132 QVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELPRRD 191
Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228
+ +N R K ++ +V +RGPQ+ +SR + +V LF EVPEI G V++ A
Sbjct: 192 QLPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRANAGLVVYLFENEVPEIQEGSVRIVA 251
Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281
V+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ WS
Sbjct: 252 VAREANPPSRSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRWSA 311
Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340
D ++ N+L PA V V +D + V+VP +QLSLAIGR GQNVRLA++LTGW ID
Sbjct: 312 DPGQYIANSLSPARVDVVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371
Query: 341 IITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEG 400
I E + Q +E E A + + + + +
Sbjct: 372 IKNAAEYDQTAEDAVVAELISQRQ----EEEALQRQAEERLAAEQAARAEEDARLRELYP 427
Query: 401 FDEETAVEIQGRAREYLEGIDITLQKKIRELGVSE 435
E+ A +Y E + ++ + ++
Sbjct: 428 LPED--------AEDYGEDETEAVAEEPADNVQAD 454
>gi|218247498|ref|YP_002372869.1| transcription elongation factor NusA [Cyanothece sp. PCC 8801]
gi|257061166|ref|YP_003139054.1| transcription elongation factor NusA [Cyanothece sp. PCC 8802]
gi|218167976|gb|ACK66713.1| NusA antitermination factor [Cyanothece sp. PCC 8801]
gi|256591332|gb|ACV02219.1| NusA antitermination factor [Cyanothece sp. PCC 8802]
Length = 412
Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats.
Identities = 129/389 (33%), Positives = 206/389 (52%), Gaps = 29/389 (7%)
Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL----------YGTM--SDIRVEINPETGD 59
+ + ++ ++ + V + +++ K + + VE++ E
Sbjct: 12 MIEEISQLHNLPKSAVQEALREALLKGYERYRRSQNLERQAFHEDYFDNFEVELDTEEEG 71
Query: 60 ISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPP--MDFGRVAVQSAKQV 117
+ ++VE VEN ISL+ ++ +G V + P DFGR+A KQV
Sbjct: 72 FRILSTKKIVEAVENTDHFISLEEVQEVASEAQLGDEVVLDVTPNQKDFGRMAAIQTKQV 131
Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS------DGVIRRDETI 171
++QK+R+ +R EF + G +++ V R E + IV + ++ + V+ + E +
Sbjct: 132 LLQKLRDQQRKLIQEEFNEIEGTVLNARVLRFERQDAIVAVQSTFGQPEVEAVLPKREQL 191
Query: 172 SRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVS 230
+N R K + VR RGPQ+++SR+ +V LF +EVPEI IV++ AVS
Sbjct: 192 PNDNYRANATFKVLLKKVREGSHRGPQLIVSRSAAGLVVDLFTVEVPEIEEEIVRIVAVS 251
Query: 231 RDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283
R+ G R K+AV + + +DPVGAC+G RGSR+QAVV ELR EKID++ WSPD
Sbjct: 252 REANPPSRHVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGEKIDVIRWSPDP 311
Query: 284 ATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342
AT++ NAL PA V V+ ++ D V+V ++QLSLAIG+ GQNVRLA++LTGW IDI
Sbjct: 312 ATYIANALSPARVDNVILINPDERHALVLVAEDQLSLAIGKEGQNVRLAARLTGWKIDIK 371
Query: 343 TEEEDSINRQKDFNERTQFFMQAINVDEI 371
++ + + Q + + D
Sbjct: 372 DTATYQAEVEQKKHAQNQTAIDPLEEDPN 400
>gi|237785727|ref|YP_002906432.1| transcription elongation factor NusA [Corynebacterium
kroppenstedtii DSM 44385]
gi|237758639|gb|ACR17889.1| N utilization substance protein A [Corynebacterium kroppenstedtii
DSM 44385]
Length = 328
Score = 251 bits (642), Expect = 2e-64, Method: Composition-based stats.
Identities = 119/346 (34%), Positives = 197/346 (56%), Gaps = 31/346 (8%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
L A+ E+ + + + + +A ++ +A G S+ RV+++P+ G +++ +V
Sbjct: 5 LSTLRAIERERGVSVEDMTATIAKALLEAWEKSSGGDSEARVDVDPDDGHVAV-----IV 59
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
E ++ I ++ P DFGR + ++ ++ +++EAE D+
Sbjct: 60 TERDDEGNVI-----------AEVDET------PSDFGRSFAGTVREAMVARLQEAEADQ 102
Query: 130 QYLEFKDKVGEIISGTVKRVE----YGNVIVDLG----NSDGVIRRDETISRENLRPGDR 181
Y E+ ++++G V+ G VI LG +DG + E I E G R
Sbjct: 103 TYEEYASLTSKVVTGIVEADSFARAKGIVIARLGTEAHGNDGTLLPAEQIPGEKYPHGKR 162
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K Y+ +V R RG Q+++SRTHP+F+ +LF +EVPE+ +G V+V +++R+ G R+K+AV
Sbjct: 163 LKFYVVNVNRGPRGVQIMISRTHPEFVHRLFELEVPEVADGSVEVVSIAREAGHRSKVAV 222
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV- 300
S+ ++ G+C+G RG RV+A++ EL EKIDI+ + D ATFV N+L P+ V KV
Sbjct: 223 RSTIDGVNAKGSCIGPRGQRVRAIMDELGGEKIDIIDFDEDPATFVGNSLAPSKVLKVEV 282
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346
+D + V VP QLSLAIG+ GQN RLA++LTGW IDI ++ E
Sbjct: 283 VDPEEQVARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIHSDTE 328
>gi|123966905|ref|YP_001011986.1| transcription elongation factor NusA [Prochlorococcus marinus str.
MIT 9515]
gi|123201271|gb|ABM72879.1| N utilization substance protein A [Prochlorococcus marinus str. MIT
9515]
Length = 467
Score = 251 bits (642), Expect = 2e-64, Method: Composition-based stats.
Identities = 125/370 (33%), Positives = 193/370 (52%), Gaps = 31/370 (8%)
Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57
+ + ++ EK + VV S + +++ K + S+ V + +
Sbjct: 12 LIEDISEEKKLPPHVVESALREALLKGYEKYRRTFYIGVKEDPFDEEYFSNFDVGFDLDE 71
Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115
+ +VEEVE+ QISL + IG V + P DFGR+A + K
Sbjct: 72 EGYRILSSKIIVEEVESEDHQISLNEVKQVADDAQIGDTVVLDVTPEKEDFGRMAASTTK 131
Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169
QV+ QK+R+ +R EF D +++ V R E +VI+ + + + + +
Sbjct: 132 QVLAQKLRDQQRKMIQEEFADLEDPVLTARVIRFERQSVIMGVSSGIGRPEVEAELPKRD 191
Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228
+ +N R K ++ +V ++GPQ+ +SR + +V LF EVPEI G V++ A
Sbjct: 192 QLPNDNYRANATFKVFLKEVSEIARKGPQLFVSRANAGLVVYLFENEVPEIQEGTVKIVA 251
Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281
VSR+ G R K+AV S + +DPVGAC+G RG+R+Q VV ELR EKID++ WS
Sbjct: 252 VSREANPPSRAVGPRTKVAVDSIEREVDPVGACIGARGARIQQVVNELRGEKIDVIKWSA 311
Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340
D +++N+L PA V V +D + V+VP +QLSLAIGR GQNVRLA++LTGW ID
Sbjct: 312 DPIEYILNSLSPAKVDLVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371
Query: 341 IITEEEDSIN 350
+ E +
Sbjct: 372 VKNSHEYNQE 381
>gi|67923759|ref|ZP_00517223.1| Transcription termination factor NusA [Crocosphaera watsonii WH
8501]
gi|67854386|gb|EAM49681.1| Transcription termination factor NusA [Crocosphaera watsonii WH
8501]
Length = 424
Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats.
Identities = 135/395 (34%), Positives = 208/395 (52%), Gaps = 29/395 (7%)
Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSL-----------YGTM-SDIRVEINPETG 58
Q+ + ++ ++ + V + +++ K Y + VE++ +
Sbjct: 11 QMIEEISQRHNLPKSSVQEALKEALIKGYERFRRSQSLDRQQFYDEYFDNFEVELDTDDE 70
Query: 59 DISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPP--MDFGRVAVQSAKQ 116
+ ++VEEVEN ISL+ ++ P ++G V + P DFGR+A KQ
Sbjct: 71 GFRILSTKKIVEEVENIDHHISLEEVQEVAPEAELGDEVVLDVTPNQKDFGRMAAIQTKQ 130
Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDET 170
V++QK+R+ +R EF + G +++ V R E ++IV + D ++ + E
Sbjct: 131 VLLQKLRDQQRKLIQEEFNELEGTVLNARVLRFERQDIIVAVQSAFGQPEVDAILPKREQ 190
Query: 171 ISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAV 229
+ +N R K + VR RGPQ+L+SR +V +F +EVPEI IV++ AV
Sbjct: 191 LPNDNYRANASFKVLLKKVREGSHRGPQLLVSRGAAGLVVDMFSVEVPEIEEDIVRIVAV 250
Query: 230 SRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPD 282
SR+ G R K+AV + + +DPVGAC+G RGSR+QAVV ELR EKID++ WSPD
Sbjct: 251 SREANPPSRYVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGEKIDVIRWSPD 310
Query: 283 SATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
AT++ NAL PA V +VV L+ + V+VP++QLSLAIG+ GQNVRLA++LTGW IDI
Sbjct: 311 PATYIANALSPARVDEVVLLNAEERHALVLVPEDQLSLAIGKEGQNVRLAARLTGWKIDI 370
Query: 342 ITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376
+K E +E +
Sbjct: 371 KDIVLYKAEAEKQQLEAETNEEIDYEDEESPLEEM 405
>gi|126657165|ref|ZP_01728331.1| transcription elongation factor NusA [Cyanothece sp. CCY0110]
gi|126621436|gb|EAZ92147.1| transcription elongation factor NusA [Cyanothece sp. CCY0110]
Length = 432
Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats.
Identities = 143/427 (33%), Positives = 221/427 (51%), Gaps = 33/427 (7%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL-----------YGTM-SDIRVEINPE 56
L Q+ + ++ ++ + V + +++ K Y + VE++ E
Sbjct: 9 LTQMIEEISQRHNLPKTAVQEALREALLKGYERFRRSQNLDRQQFYDEYFDNFEVELDTE 68
Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114
+ +VEEVEN ISL+ ++ +G V + P DFGR+A
Sbjct: 69 EEGFRILSTKRIVEEVENTDHHISLQEVQEVASEAQLGDEVVLDVTPEQKDFGRMAAIQT 128
Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS------DGVIRRD 168
KQV++QK+R+ +R EF + G +++ V R E ++IV + ++ + ++ R
Sbjct: 129 KQVLLQKLRDQQRKLIQEEFHELEGTVLNARVLRFERQDIIVAVQSTFGQPEVEAILPRR 188
Query: 169 ETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227
E + +N R K + VR RGPQ+L+SR +V +F +EVPEI IV++
Sbjct: 189 EQLPNDNYRANASFKVLLKKVREGSHRGPQLLVSRGAAGLVVDMFSVEVPEIEEDIVRIV 248
Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280
AVSR+ G R K+AV + + +DPVGAC+G RGSR+QAVV ELR EKID++ WS
Sbjct: 249 AVSREANPPSRYVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGEKIDVIRWS 308
Query: 281 PDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
PD AT++ NAL PA V +VV L+ + V+V ++QLSLAIG+ GQNVRLA++LTGW I
Sbjct: 309 PDPATYIANALSPARVDEVVLLNAEERHALVLVAEDQLSLAIGKEGQNVRLAARLTGWKI 368
Query: 340 DIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIE 399
DI +K E + DE + + VE+ + S++ S +
Sbjct: 369 DIKDIAIYKAEAEKRQLEAETREEEYDEEDETELEPMTSA----VEDENFDEESDLDSSD 424
Query: 400 GFDEETA 406
FD T
Sbjct: 425 EFDNSTL 431
>gi|113477415|ref|YP_723476.1| transcription elongation factor NusA [Trichodesmium erythraeum
IMS101]
gi|110168463|gb|ABG53003.1| NusA antitermination factor [Trichodesmium erythraeum IMS101]
Length = 426
Score = 251 bits (640), Expect = 3e-64, Method: Composition-based stats.
Identities = 123/394 (31%), Positives = 199/394 (50%), Gaps = 29/394 (7%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARS----------LYGTM--SDIRVEINPE 56
L ++ ++ E+++ + V + + +++ K + + +E++ E
Sbjct: 9 LKELIGNISKERNLPKQAVQTALREALLKGYERYRRTQRVDGVNFTDDYFENFEIELDIE 68
Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114
+ +VEEV N I+L+ + + V + P +FGR+A
Sbjct: 69 EEGYRVLATKTIVEEVTNPDHHIALQEVLEVASEAQLNDTVFLDVTPEKNEFGRMAAIQT 128
Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRD 168
KQV+ QK+R+ +R EF+D GE++ V R E +VI+ + + + +
Sbjct: 129 KQVLAQKLRDQQRKMIQEEFQDLEGEVLQARVLRFEKQSVILAVSSGFGRLEVEAELPKK 188
Query: 169 ETISRENLRPGDRVKSYIYD-VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227
E + +N R K Y+ RGPQ+L+SR +V LF EVPEI + +V++
Sbjct: 189 EQLPNDNYRANATFKVYLKRVCEGSTRGPQLLVSRADAGLVVYLFENEVPEIEDEVVRIV 248
Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280
AV+R+ G R K+AV + + +DPVGAC+G RGSR+Q VV ELR EKID++ WS
Sbjct: 249 AVAREANPPSRHVGPRTKIAVDTLERDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWS 308
Query: 281 PDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
PD + ++ N+L PA V +V +D + R ++V ++QLSLAIG+ GQNVRLA++LTGW I
Sbjct: 309 PDPSIYIANSLSPARVDEVRLIDPEERRSHILVSEDQLSLAIGKEGQNVRLAARLTGWKI 368
Query: 340 DIITEEEDSINRQKDFNERTQFFMQAINVDEIIA 373
DI + QA+ E
Sbjct: 369 DIKDTNRYDHAEEDSKVAAEVSHRQALAEQEENK 402
>gi|172036756|ref|YP_001803257.1| transcription elongation factor NusA [Cyanothece sp. ATCC 51142]
gi|171698210|gb|ACB51191.1| transcription termination factor, N utilization substance protein
[Cyanothece sp. ATCC 51142]
Length = 428
Score = 251 bits (640), Expect = 3e-64, Method: Composition-based stats.
Identities = 131/364 (35%), Positives = 199/364 (54%), Gaps = 29/364 (7%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL-----------YGTM-SDIRVEINPE 56
L Q+ + ++ ++ + V + +++ K Y + VE++ E
Sbjct: 9 LTQMIEEISQRHNLPKTAVQEALREALLKGYERFRRSQNLDRQQFYDEYFDNFEVELDTE 68
Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114
+ +VEEVEN ISL+ ++ +G V + P DFGR+A
Sbjct: 69 EEGFRILSTKRIVEEVENSDHHISLQEVQEVASEAQLGDEVVLDVTPEQKDFGRMAAIQT 128
Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRD 168
KQV++QK+R+ +R EF + G +++ V R E ++IV + + ++ +
Sbjct: 129 KQVLLQKLRDQQRKLIQEEFHELEGTVLNARVLRFERQDIIVAVQSAFGQPEVEAILPKR 188
Query: 169 ETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227
E + +N R K + VR RGPQ+L+SR +V +F +EVPEI IV++
Sbjct: 189 EQLPNDNYRANASFKVLLKKVREGSHRGPQLLVSRGAAGLVVDMFSVEVPEIEEDIVRIV 248
Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280
AVSR+ G R K+AV + + +DPVGAC+G RGSR+QAVV ELR EKID++ WS
Sbjct: 249 AVSREANPPSRYVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGEKIDVIRWS 308
Query: 281 PDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
PD AT++ NAL PA V +VV L+ + V+V ++QLSLAIG+ GQNVRLA++LTGW I
Sbjct: 309 PDPATYIANALSPARVDEVVLLNAEERHALVLVAEDQLSLAIGKEGQNVRLAARLTGWKI 368
Query: 340 DIIT 343
DI
Sbjct: 369 DIKD 372
>gi|227488651|ref|ZP_03918967.1| transcription elongation factor NusA [Corynebacterium
glucuronolyticum ATCC 51867]
gi|227091545|gb|EEI26857.1| transcription elongation factor NusA [Corynebacterium
glucuronolyticum ATCC 51867]
Length = 326
Score = 251 bits (640), Expect = 3e-64, Method: Composition-based stats.
Identities = 123/348 (35%), Positives = 190/348 (54%), Gaps = 33/348 (9%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAA--RSLYGTMSDIRVEINPETGDISLFRLLE 67
+ + EK I + +L+ +A + A S RVEI+P++G +++F
Sbjct: 1 MSALRVLEKEKGISVEDLLTTIAQGLHSAYLQAHHLEDESSARVEIDPDSGAVTVF---- 56
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
A +RD +I + P DFGR+ + + +++RE +
Sbjct: 57 ----------------AIERDEDGEI--ISEQDETPEDFGRLGASVVRDAVYRRLREVKT 98
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETISRENLRPG 179
DR + E+ G+ +SG V+ N +V LG DG++ E I ENL+ G
Sbjct: 99 DRDFDEYAGLEGKCVSGVVQADARANERGIAVVRLGTELQGQDGILLPGEQIPGENLKHG 158
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
DRVK YI V + + Q+ LSRTHP+ + +LF +EVPE+ +G V++ ++R+ G R+K+
Sbjct: 159 DRVKCYIVGVGKGRGSLQISLSRTHPELVRRLFELEVPEVESGDVEIVGIAREAGHRSKI 218
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV ++ ++ GAC+G +G RV V+ ELR EKIDI+ + + AT+V NAL P+ V V
Sbjct: 219 AVHATTKGVNAKGACIGPKGQRVNNVMRELRGEKIDIIDYDENPATYVGNALAPSKVVGV 278
Query: 300 VL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346
+ DE+ V VP QLSLAIG+ GQN RLA++LTGW IDI ++E
Sbjct: 279 EVLDEENQIARVTVPDYQLSLAIGKEGQNARLAARLTGWKIDIRSDES 326
>gi|254526931|ref|ZP_05138983.1| transcription termination factor NusA [Prochlorococcus marinus str.
MIT 9202]
gi|221538355|gb|EEE40808.1| transcription termination factor NusA [Prochlorococcus marinus str.
MIT 9202]
Length = 467
Score = 250 bits (639), Expect = 4e-64, Method: Composition-based stats.
Identities = 130/428 (30%), Positives = 208/428 (48%), Gaps = 32/428 (7%)
Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57
+ + ++ EK + ++V + + +++ K + S+ V ++ +
Sbjct: 12 LIEDISEEKKLPPNIVEAALREALLKGYEKYRRTFYIGVNEDPFDEEYFSNFDVGLDLDE 71
Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115
+ +VEEVE+ QISL + IG V + P DFGR+A + K
Sbjct: 72 EGYRILSSKIIVEEVESEDHQISLLEVKQVADDAQIGDTVVLDVTPEKEDFGRMAASTTK 131
Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169
QV+ QK+R+ +R EF D +++ V R E +VI+ + + + + +
Sbjct: 132 QVLAQKLRDHQRKMIQEEFADLEDPVLTARVIRFERQSVIMGVSSGIGRPEVEAELPKRD 191
Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228
+ +N R K ++ +V ++GPQ+ +SR + +V LF EVPEI G V++ A
Sbjct: 192 QLPNDNYRANATFKVFLKEVSEIARKGPQLFVSRANAGLVVYLFENEVPEIQEGTVKIVA 251
Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281
VSR+ G R K+AV S + +DPVGAC+G RG+R+Q VV ELR EKID++ WS
Sbjct: 252 VSREANPPSRAVGPRTKVAVDSVEQEVDPVGACIGARGARIQQVVNELRGEKIDVIKWSS 311
Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340
D +++N+L PA V V +D + V+VP +QLSLAIGR GQNVRLA++LTGW ID
Sbjct: 312 DPIQYILNSLSPAKVDLVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371
Query: 341 IITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEG 400
+ E + + + L E ++ E+ +
Sbjct: 372 VKNSHEYDQEAEDAAVSEL-IIQREDEENLQREAELRLEAEQAERAAEDARLRELYPLPE 430
Query: 401 FDEETAVE 408
DEE E
Sbjct: 431 DDEEYGEE 438
>gi|33862048|ref|NP_893609.1| transcription elongation factor NusA [Prochlorococcus marinus
subsp. pastoris str. CCMP1986]
gi|33634266|emb|CAE19951.1| N utilization substance protein A [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 467
Score = 250 bits (639), Expect = 4e-64, Method: Composition-based stats.
Identities = 135/448 (30%), Positives = 213/448 (47%), Gaps = 34/448 (7%)
Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57
+ + ++ EK + VV + +++ K + S+ V + +
Sbjct: 12 LIEDISEEKKLPPHVVELALREALLKGYEKYRKTFYIGVKEDPFDEEYFSNFDVGFDLDE 71
Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115
+ +VE VE+ QISL+ + IG V + P DFGR+A + K
Sbjct: 72 EGYRILSSKIIVENVESEDHQISLQEVKQVADDAQIGDTVVLDVTPEKEDFGRMAASTTK 131
Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169
QV+ QK+R+ +R EF D +++ V R E +VI+ + + + + +
Sbjct: 132 QVLAQKLRDQQRKMIQEEFADLEDPVLTARVIRFERQSVIMGVSSGIGRPEVEAELPKRD 191
Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228
+ +N R K ++ +V ++GPQ+ +SR + +V LF EVPEI G V++ A
Sbjct: 192 QLPNDNYRANATFKVFLKEVSEVARKGPQLFVSRANAGLVVYLFENEVPEIQEGTVKIVA 251
Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281
VSR+ G R K+AV S + +DPVGAC+G RG+R+Q VV ELR EKID++ WS
Sbjct: 252 VSREANPPSRAVGPRTKVAVDSIEREVDPVGACIGARGARIQQVVNELRGEKIDVIKWSS 311
Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340
D +++N+L PA V V +D + V+VP +QLSLAIGR GQNVRLA++LTGW ID
Sbjct: 312 DPIQYILNSLSPAKVDLVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371
Query: 341 IIT-EEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIE 399
+ E D E + N+ L AE ++ E+ +
Sbjct: 372 VKNSYEYDQETEDSAVAELIVQREEEENLQREAEQRLEAE--QAERAAEDKRLRELYPLP 429
Query: 400 GFDEETAVEIQGRAREYLEGIDITLQKK 427
DEE E+ L+++
Sbjct: 430 EDDEEYGDELYEEETRSENDQTENLKQE 457
>gi|254422159|ref|ZP_05035877.1| transcription termination factor NusA [Synechococcus sp. PCC 7335]
gi|196189648|gb|EDX84612.1| transcription termination factor NusA [Synechococcus sp. PCC 7335]
Length = 517
Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats.
Identities = 129/377 (34%), Positives = 203/377 (53%), Gaps = 28/377 (7%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARS---------LYGTM--SDIRVEINPET 57
L + D ++ E+++ + V + +++ K + + VE++ +
Sbjct: 9 LQAMIDGISQERNLPKSAVEMALQEALLKGYERYRRTQRIDGQFDEEYFDNFYVELDTDD 68
Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115
+ +VE VEN QI L + P G V + P DFGR+A K
Sbjct: 69 EGFRVLANKTIVEAVENSDHQIGLAEVQQVAPEALAGDTVVLDVTPEQNDFGRMAAIQTK 128
Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169
QV+ QK+R+ +R EF+D G I++ V R E +VI+ + +++ + + +
Sbjct: 129 QVLAQKLRDQQRRLIQEEFQDLEGSILNARVLRFERQSVIMAVSSGIGQPDTEAELLKRD 188
Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228
+ +N R + + V RGPQ+L+SR+ +V+LF EVPEI + IV++ A
Sbjct: 189 QLPNDNYRANATFRVALKRVSEGSHRGPQLLVSRSDASLVVELFSNEVPEIEDEIVRIVA 248
Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281
V+R+ G R K+AV +++S +DPVGAC+G RGSR+Q VV ELR EKID++ WSP
Sbjct: 249 VAREANPPSRSVGPRTKIAVDTAESDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWSP 308
Query: 282 DSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340
D +T++ NAL PA V +V L D + + V+VP++QLSLAIG+ GQNVRLA++LTGW ID
Sbjct: 309 DPSTYISNALSPARVDEVRLMDSEGRQAHVLVPEDQLSLAIGKEGQNVRLAARLTGWKID 368
Query: 341 IITEEEDSINRQKDFNE 357
I + +
Sbjct: 369 IKDSAKYDYEAENQKMS 385
>gi|297571193|ref|YP_003696967.1| transcription termination factor NusA [Arcanobacterium haemolyticum
DSM 20595]
gi|296931540|gb|ADH92348.1| transcription termination factor NusA [Arcanobacterium haemolyticum
DSM 20595]
Length = 325
Score = 250 bits (638), Expect = 5e-64, Method: Composition-based stats.
Identities = 123/340 (36%), Positives = 201/340 (59%), Gaps = 28/340 (8%)
Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV 72
V E ID +V+L+ + +++ A + G + RVE+N TG ++++
Sbjct: 8 LRIVESELGIDLNVLLNAIEEALVHAYNRVPGAVRGARVELNRSTGKVTVW--------- 58
Query: 73 ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYL 132
A + D + ++ G D P DFGR+A +A+ +I Q++R+AE DR
Sbjct: 59 -----------APEVDENNEVIGEFDD--TPNDFGRIATSTARSIIAQRLRDAETDRVLG 105
Query: 133 EFKDKVGEIISGTVK-----RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
F+ K G+++SG V+ E ++ ++LG + G++R DE ++ E+ + GD +++ +
Sbjct: 106 SFQGKKGQLVSGVVEGTAGSNPESRDLFIELGENRGLLRSDEQVASEHFKRGDLLRALVL 165
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
D+ RG + LSR+HP F+ +LF EVPEI +G V++ A++R+ G R K+AV+S+D +
Sbjct: 166 DISVGPRGASIRLSRSHPDFVRQLFETEVPEIADGPVEIVALAREAGHRTKVAVWSNDDA 225
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVG 306
+ G+ +G G RV+AV EL EKID+V + D A F+ AL PA VT+V + + D+
Sbjct: 226 VAAKGSLIGHNGQRVRAVTAELNGEKIDVVDYDDDPAKFIAAALSPAKVTEVEILNRDMR 285
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346
+ IVP +Q SLAIG+ QNVRLA++LTGW+IDI E +
Sbjct: 286 QARAIVPDDQASLAIGKEAQNVRLAAKLTGWSIDIRRESD 325
>gi|87301303|ref|ZP_01084144.1| transcription elongation factor NusA [Synechococcus sp. WH 5701]
gi|87284271|gb|EAQ76224.1| transcription elongation factor NusA [Synechococcus sp. WH 5701]
Length = 492
Score = 250 bits (638), Expect = 5e-64, Method: Composition-based stats.
Identities = 126/372 (33%), Positives = 194/372 (52%), Gaps = 31/372 (8%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEIN 54
L + + ++ EK + VV + + +++ K + S+ V ++
Sbjct: 9 LQNLIEDISEEKKLPTQVVEAALREALLKGYERYRRTLYLGISEDPFEEDYFSNFDVALD 68
Query: 55 PETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQ 112
+ + +VEEVE+ QI+L + +G V + P DFGR+A
Sbjct: 69 LDEEGYRVLASKIIVEEVESEDHQIALAEVQQVAEDAQVGDTVVLDVTPEKDDFGRMAAA 128
Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIR 166
+ KQV+ QK+R+ +R EF D +++ V R E +VI+ + + +
Sbjct: 129 TTKQVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELP 188
Query: 167 RDETISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225
R + + +N R K ++ +V +RGPQ+ +SR + +V LF EVPEI G V+
Sbjct: 189 RRDQLPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRANAGLVVYLFENEVPEIQEGSVR 248
Query: 226 VKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVV 278
+ AV+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++
Sbjct: 249 IVAVAREANPPSRAVGPRTKVAVDSVEREVDPVGACIGARGSRIQQVVNELRGEKIDVIR 308
Query: 279 WSPDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337
WSPD ++ N+L PA V V +D + V+VP +QLSLAIGR GQNVRLA++LTGW
Sbjct: 309 WSPDPGQYLANSLSPARVEMVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGW 368
Query: 338 TIDIITEEEDSI 349
IDI +
Sbjct: 369 KIDIKNAADYDQ 380
>gi|260434603|ref|ZP_05788573.1| transcription termination factor NusA [Synechococcus sp. WH 8109]
gi|260412477|gb|EEX05773.1| transcription termination factor NusA [Synechococcus sp. WH 8109]
Length = 483
Score = 249 bits (637), Expect = 7e-64, Method: Composition-based stats.
Identities = 125/370 (33%), Positives = 191/370 (51%), Gaps = 31/370 (8%)
Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57
+ D ++ EK + VV + + +++ K + S+ V ++ E
Sbjct: 12 LIDDISEEKKLPPQVVEAALREALLKGYERYRRTLYIGISEDPFDEEYFSNFDVGLDLEE 71
Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115
+ +V+EVE+ QI++ +G V + P DFGR+A + K
Sbjct: 72 EGYRVLASKIIVDEVESEDHQIAIAEVMQVADDAQVGDTVVLDVTPEKEDFGRMAAATTK 131
Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169
QV+ QK+R+ +R EF D +++ V R E +VI+ + + + R +
Sbjct: 132 QVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELPRRD 191
Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228
+ +N R K ++ +V +RGPQ+ +SR++ +V LF EVPEI G V++ A
Sbjct: 192 QLPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRSNAGLVVYLFENEVPEIQEGSVRIVA 251
Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281
V+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ WS
Sbjct: 252 VAREANPPSRSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRWSQ 311
Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340
D ++ N+L PA V V +D V+VP +QLSLAIGR GQNVRLA++LTGW ID
Sbjct: 312 DPGQYIANSLSPARVEMVRLVDPVGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371
Query: 341 IITEEEDSIN 350
I E
Sbjct: 372 IKNSTEYDQE 381
>gi|157414094|ref|YP_001484960.1| transcription elongation factor NusA [Prochlorococcus marinus str.
MIT 9215]
gi|157388669|gb|ABV51374.1| N utilization substance protein A [Prochlorococcus marinus str. MIT
9215]
Length = 467
Score = 249 bits (637), Expect = 7e-64, Method: Composition-based stats.
Identities = 130/428 (30%), Positives = 208/428 (48%), Gaps = 32/428 (7%)
Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57
+ + ++ EK + ++V + + +++ K + S+ V ++ +
Sbjct: 12 LIEDISEEKKLPPNIVEAALREALLKGYEKYRRTFYIGVNEDPFDEEYFSNFDVGLDLDE 71
Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115
+ +VEEVE+ QISL + IG V + P DFGR+A + K
Sbjct: 72 EGYRILSSKIIVEEVESEDHQISLLEVKQVADDAQIGDTVVLDVTPEKEDFGRMAASTTK 131
Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169
QV+ QK+R+ +R EF D +++ V R E +VI+ + + + + +
Sbjct: 132 QVLAQKLRDQQRKMIQEEFADLEDPVLTARVIRFERQSVIMGVSSGIGRPEVEAELPKRD 191
Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228
+ +N R K ++ +V ++GPQ+ +SR + +V LF EVPEI G V++ A
Sbjct: 192 QLPNDNYRANATFKVFLKEVSEIARKGPQLFVSRANAGLVVYLFENEVPEIQEGTVKIVA 251
Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281
VSR+ G R K+AV S + +DPVGAC+G RG+R+Q VV ELR EKID++ WS
Sbjct: 252 VSREANPPSRAVGPRTKVAVDSVEQEVDPVGACIGARGARIQQVVNELRGEKIDVIKWSS 311
Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340
D +++N+L PA V V +D + V+VP +QLSLAIGR GQNVRLA++LTGW ID
Sbjct: 312 DPIQYILNSLSPAKVDLVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371
Query: 341 IITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEG 400
+ E + + + L E ++ E+ +
Sbjct: 372 VKNSHEYDQEAEDAAVSEL-IIQREEEENLQREAELRLEAEQAERAAEDARLRELYPLPE 430
Query: 401 FDEETAVE 408
DEE E
Sbjct: 431 DDEEYGEE 438
>gi|78213595|ref|YP_382374.1| transcription elongation factor NusA [Synechococcus sp. CC9605]
gi|78198054|gb|ABB35819.1| NusA antitermination factor [Synechococcus sp. CC9605]
Length = 481
Score = 249 bits (636), Expect = 8e-64, Method: Composition-based stats.
Identities = 125/370 (33%), Positives = 191/370 (51%), Gaps = 31/370 (8%)
Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57
+ D ++ EK + VV + + +++ K + S+ V ++ E
Sbjct: 12 LIDDISEEKKLPPQVVEAALREALLKGYERYRRTLYLGISEDPFDEEYFSNFDVGLDLEE 71
Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115
+ +V+EVE+ QI++ +G V + P DFGR+A + K
Sbjct: 72 EGYRVLASKIIVDEVESEDHQIAIAEVMQVADDAQVGDTVVLDVTPEKEDFGRMAAATTK 131
Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169
QV+ QK+R+ +R EF D +++ V R E +VI+ + + + R +
Sbjct: 132 QVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELPRRD 191
Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228
+ +N R K ++ +V +RGPQ+ +SR++ +V LF EVPEI G V++ A
Sbjct: 192 QLPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRSNAGLVVYLFENEVPEIQEGSVRIVA 251
Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281
V+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ WS
Sbjct: 252 VAREANPPSRSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRWSQ 311
Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340
D ++ N+L PA V V +D V+VP +QLSLAIGR GQNVRLA++LTGW ID
Sbjct: 312 DPGQYIANSLSPARVEMVRLVDPVGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371
Query: 341 IITEEEDSIN 350
I E
Sbjct: 372 IKNSTEYDQE 381
>gi|33241096|ref|NP_876038.1| transcription elongation factor NusA [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
gi|33238625|gb|AAQ00691.1| Transcription elongation factor NusA [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
Length = 472
Score = 249 bits (636), Expect = 8e-64, Method: Composition-based stats.
Identities = 123/369 (33%), Positives = 191/369 (51%), Gaps = 31/369 (8%)
Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57
+ + ++ EK + VV + + +++ K + S+ + ++ +
Sbjct: 12 LIEDISEEKKLPAQVVETALREALLKGYERYRKTLYLGINENPFEEEYFSNFDIGLDLDQ 71
Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115
+ +VEEV++ QI+L G V + P +FGR+A + K
Sbjct: 72 EGYRVLASKIIVEEVDSEDHQIALAEVMQVAEDAQAGDTVVLDVTPEKEEFGRMAASTTK 131
Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169
QV+ QK+R+ +R EF D +++ V R E +VI+ + + + R +
Sbjct: 132 QVLSQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELPRRD 191
Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228
+ +N R K ++ +V +RGPQ+ +SR + +V LF EVPEI G V++ A
Sbjct: 192 QLPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRANAGLVVYLFENEVPEIQEGSVRIVA 251
Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281
V+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ WS
Sbjct: 252 VAREANPPSRSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRWST 311
Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340
D ++ N+L PA V V +D D V+VP +QLSLAIGR GQNVRLA++LTGW ID
Sbjct: 312 DPIQYICNSLSPARVENVRLVDPDGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371
Query: 341 IITEEEDSI 349
I +E
Sbjct: 372 IKNSQEYDQ 380
>gi|227543254|ref|ZP_03973303.1| transcription elongation factor NusA [Corynebacterium
glucuronolyticum ATCC 51866]
gi|227181063|gb|EEI62035.1| transcription elongation factor NusA [Corynebacterium
glucuronolyticum ATCC 51866]
Length = 326
Score = 249 bits (635), Expect = 1e-63, Method: Composition-based stats.
Identities = 123/348 (35%), Positives = 191/348 (54%), Gaps = 33/348 (9%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAA--RSLYGTMSDIRVEINPETGDISLFRLLE 67
+ + EK I + +L+ +A + +A S RVEI+P++G +++F
Sbjct: 1 MSALRVLEKEKGISVEDLLTTIAQGLHRAYLQAHHLEDESSARVEIDPDSGAVTVF---- 56
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
A +RD +I + P DFGR+ + + +++RE +
Sbjct: 57 ----------------AIERDEDGEI--ISEQDETPEDFGRLGASVVRDAVYRRLREVKT 98
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETISRENLRPG 179
DR + E+ G+ +SG V+ N +V LG DG++ E I ENL+ G
Sbjct: 99 DRDFDEYAGLEGKCVSGVVQADARANERGIAVVRLGTELQGQDGILLPGEQIPGENLKHG 158
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
DRVK YI V + + Q+ LSRTHP+ + +LF +EVPE+ +G V++ ++R+ G R+K+
Sbjct: 159 DRVKCYIVGVGKGRGSLQISLSRTHPELVRRLFELEVPEVESGDVEIVGIAREAGHRSKI 218
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV ++ ++ GAC+G +G RV V+ ELR EKIDI+ + + AT+V NAL P+ V V
Sbjct: 219 AVHATTKGVNAKGACIGPKGQRVNNVMRELRGEKIDIIDYDENPATYVGNALAPSKVVGV 278
Query: 300 VL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346
+ DE+ V VP QLSLAIG+ GQN RLA++LTGW IDI ++E
Sbjct: 279 EVLDEENQIARVTVPDYQLSLAIGKEGQNARLAARLTGWKIDIRSDES 326
>gi|124022125|ref|YP_001016432.1| transcription elongation factor NusA [Prochlorococcus marinus str.
MIT 9303]
gi|123962411|gb|ABM77167.1| N utilization substance protein A [Prochlorococcus marinus str. MIT
9303]
Length = 484
Score = 249 bits (635), Expect = 1e-63, Method: Composition-based stats.
Identities = 133/409 (32%), Positives = 203/409 (49%), Gaps = 32/409 (7%)
Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57
+ + ++ EK + VV + + +++ K + S+ V + +
Sbjct: 12 LIEDISEEKKLPTQVVEAALREALLKGYERYRRTLYLGISEDPFEEEYFSNFDVGLELDD 71
Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115
+ +VEEVE+ QI+L+ IG V + P DFGR+A + K
Sbjct: 72 EGYRVLASKIIVEEVESEDHQIALQEVMQVAEDAQIGDTVVLDVTPEKEDFGRMAAATTK 131
Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169
QV+ QK+R+ +R EF D +++ V R E +VI+ + + + R +
Sbjct: 132 QVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERHSVIMAVSSGLGRPEVEAELPRRD 191
Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228
+ +N R K ++ +V +RGPQ+ +SR++ +V LF EVPEI G V++ A
Sbjct: 192 QLPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRSNAGLVVYLFENEVPEIQEGSVRIVA 251
Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281
V+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ WSP
Sbjct: 252 VAREANPPSRSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRWSP 311
Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340
D ++ N+L PA V V +D + V+VP +QLSLAIGR GQNVRLA++LTGW ID
Sbjct: 312 DPGQYIANSLSPARVEMVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371
Query: 341 IITEEEDSINRQKDFNERTQFFMQAIN-VDEIIAHLLVAEGFADVEELA 388
I +E + + + L AE EE A
Sbjct: 372 IKNSQEYDQASEDTTVAELISQREEEEALQRDAESRLAAEQATRAEEDA 420
>gi|116071183|ref|ZP_01468452.1| transcription elongation factor NusA [Synechococcus sp. BL107]
gi|116066588|gb|EAU72345.1| transcription elongation factor NusA [Synechococcus sp. BL107]
Length = 492
Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats.
Identities = 133/429 (31%), Positives = 206/429 (48%), Gaps = 34/429 (7%)
Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57
+ D ++ EK + VV + + +++ K + S+ V ++ E
Sbjct: 12 LIDDISEEKKLAPQVVEAALREALLKGYERYRRTLYIGISEDPFDEDYFSNFDVGLDLEE 71
Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115
+ +V+EVE+ QI+L G V + P DFGR+A + K
Sbjct: 72 EGYRVLASKIIVDEVESEDHQIALAEVMQVAEDAQAGDTVVLDVTPEKEDFGRMAAATTK 131
Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169
QV+ QK+R+ +R EF D +++ V R E ++I+ + + + R +
Sbjct: 132 QVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSIIMAVSSGLGRPEVEAELPRRD 191
Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228
+ +N R K ++ +V +RGPQ+ +SR++ +V LF EVPEI G V++ A
Sbjct: 192 QLPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRSNAGLVVYLFENEVPEIQEGSVRIVA 251
Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281
V+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ WS
Sbjct: 252 VAREANPPSRSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRWSQ 311
Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340
D ++ N+L PA V V +D V+VP +QLSLAIGR GQNVRLA++LTGW ID
Sbjct: 312 DPGQYIANSLSPARVEMVRLVDPAGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371
Query: 341 IIT-EEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIE 399
I E D E + + + L E ++ E+ +
Sbjct: 372 IKNSTEYDQAAEDAVVAELISQREEEEALQQEAEERLAVEQ--AARAEEDARLRELYPLP 429
Query: 400 GFDEETAVE 408
DE+ E
Sbjct: 430 EDDEDYVDE 438
>gi|148240413|ref|YP_001225800.1| transcription elongation factor NusA [Synechococcus sp. WH 7803]
gi|147848952|emb|CAK24503.1| Transcription elongation factor NusA [Synechococcus sp. WH 7803]
Length = 469
Score = 247 bits (632), Expect = 2e-63, Method: Composition-based stats.
Identities = 131/456 (28%), Positives = 206/456 (45%), Gaps = 35/456 (7%)
Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57
+ + ++ EK + VV + + +++ K + S+ V ++ +
Sbjct: 12 LIEDISEEKKLPPQVVEAALREALLKGYERYRRTLYLGVGEDPFDEEYFSNFDVALDLDE 71
Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115
+ +V+EVE+ QI+L G V + P DFGR+A + K
Sbjct: 72 EGYRVLASKIIVDEVESEDHQIALAEVMQVADDAQSGDTVVLDVTPEKEDFGRMAAATTK 131
Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169
QV+ QK+R+ +R EF D +++ V R E +VI+ + + + R +
Sbjct: 132 QVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELPRRD 191
Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228
+ +N R K ++ +V +RGPQ+ +SR + +V LF EVPEI G V++ A
Sbjct: 192 QLPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRANAGLVVYLFENEVPEIQEGSVRIVA 251
Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281
V+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ WS
Sbjct: 252 VAREANPPSRSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRWSS 311
Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340
D ++ N+L PA V V +D V+VP +QLSLAIGR GQNVRLA++LTGW ID
Sbjct: 312 DPGQYIANSLSPARVDVVRLVDPVGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371
Query: 341 IITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEG 400
I E + + E E A + + + + +
Sbjct: 372 IKNASEYDQASEDAVVAELIAQRE----QEEALQREAEERLAAEQAARAEEDARLRELYP 427
Query: 401 FDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE 436
E+ A + + SE
Sbjct: 428 LPEDEEEYGDETAEDVVMSEGEAADTSEVTPESSES 463
>gi|33863793|ref|NP_895353.1| transcription elongation factor NusA [Prochlorococcus marinus str.
MIT 9313]
gi|33635376|emb|CAE21701.1| N utilization substance protein A [Prochlorococcus marinus str. MIT
9313]
Length = 482
Score = 247 bits (631), Expect = 3e-63, Method: Composition-based stats.
Identities = 134/409 (32%), Positives = 203/409 (49%), Gaps = 32/409 (7%)
Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57
+ + ++ EK + VV + + +++ K + S+ V + E
Sbjct: 12 LIEDISEEKKLPTQVVEAALREALLKGYERYRRTLYLGISEDPFEEEYFSNFDVGLELED 71
Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115
+ +VEEVE+ QI+L+ IG V + P DFGR+A + K
Sbjct: 72 EGYRVLASKIIVEEVESEDHQIALQEVMQVAEDAQIGDTVVLDVTPEKEDFGRMAAATTK 131
Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169
QV+ QK+R+ +R EF D +++ V R E +VI+ + + + R +
Sbjct: 132 QVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERHSVIMAVSSGLGRPEVEAELPRRD 191
Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228
+ +N R K ++ +V +RGPQ+ +SR++ +V LF EVPEI G V++ A
Sbjct: 192 QLPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRSNAGLVVYLFENEVPEIQEGSVRIVA 251
Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281
V+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ WSP
Sbjct: 252 VAREANPPSRSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRWSP 311
Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340
D ++ N+L PA V V +D + V+VP +QLSLAIGR GQNVRLA++LTGW ID
Sbjct: 312 DPGQYIANSLSPARVEMVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371
Query: 341 IITEEEDSINRQKDFNERTQFFMQAIN-VDEIIAHLLVAEGFADVEELA 388
I +E + + + L AE EE A
Sbjct: 372 IKNSQEYDQASEDTTVAELISQREEEEALQRDAEARLAAEQATRAEEDA 420
>gi|88807314|ref|ZP_01122826.1| transcription elongation factor NusA [Synechococcus sp. WH 7805]
gi|88788528|gb|EAR19683.1| transcription elongation factor NusA [Synechococcus sp. WH 7805]
Length = 470
Score = 247 bits (631), Expect = 3e-63, Method: Composition-based stats.
Identities = 133/457 (29%), Positives = 209/457 (45%), Gaps = 36/457 (7%)
Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57
+ + ++ EK + VV + + +++ K + S+ V ++ +
Sbjct: 12 LIEDISEEKKLPPQVVEAALREALLKGYERYRRTLYLGLGEDPFDEEYFSNFDVALDLDE 71
Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115
+ +V+EVE+ QI+L G V + P DFGR+A + K
Sbjct: 72 EGYRVLASKIIVDEVESEDHQIALAEVMQVADDAQAGDTVVLDVTPEKEDFGRMAAATTK 131
Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169
QV+ QK+R+ +R EF D +++ V R E +VI+ + + + R +
Sbjct: 132 QVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELPRRD 191
Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228
+ +N R K ++ +V +RGPQ+ +SR + +V LF EVPEI G V++ A
Sbjct: 192 QLPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRANAGLVVYLFENEVPEIQEGSVRIVA 251
Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281
V+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ WS
Sbjct: 252 VAREANPPSRSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRWSA 311
Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340
D ++ N+L PA V V +D V+VP +QLSLAIGR GQNVRLA++LTGW ID
Sbjct: 312 DPGQYIANSLSPARVDVVRLVDPVGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371
Query: 341 IIT----EEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIA 396
I ++ + + + E A + L +
Sbjct: 372 IKNASEYDQASEDAVVSELISQREQEEALQREAEERIAAEQAARAEEDARLRELYPLPED 431
Query: 397 SIEGFDEETAV-EIQGRAREYLEGIDITLQKKIRELG 432
E DE E+ A + + E+G
Sbjct: 432 EEEYGDEAVDDVEMPEGATDEASEPTPESDESSNEVG 468
>gi|227549050|ref|ZP_03979099.1| transcription elongation factor NusA [Corynebacterium
lipophiloflavum DSM 44291]
gi|227078904|gb|EEI16867.1| transcription elongation factor NusA [Corynebacterium
lipophiloflavum DSM 44291]
Length = 341
Score = 247 bits (630), Expect = 4e-63, Method: Composition-based stats.
Identities = 124/358 (34%), Positives = 197/358 (55%), Gaps = 35/358 (9%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSL----YGTMSDIRVEINPETGDISLFRL 65
L A++ E ID D +L +A ++ R RVEI+ +TGD+S+
Sbjct: 5 LNALKAISTEHGIDVDDLLETIAGALLSVYRDYREAPPAEGHRARVEIDADTGDVSVL-- 62
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
V EV++ +S P++F R+ + I ++VREA
Sbjct: 63 ---VSEVDDDGAVVS-----------------EYDDTPVNFSRIGAPTVLDAIKKRVREA 102
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVE----YGNVIVDLGN----SDGVIRRDETISRENLR 177
E R + E+ + G+++SG V+R G ++V+LG DG++ E I E L+
Sbjct: 103 EAGRVFSEYSEFEGQVVSGVVQRDANAEARGLIVVELGTEADPQDGILLPAEQIPGEKLK 162
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
GDR+K+++ V + +R QV LSRTHP+ + LF +EVPE+ +G V++ A++R+ G R+
Sbjct: 163 HGDRIKAFVVGVNKGERKVQVNLSRTHPELVRGLFALEVPEVADGTVEIVAIAREAGHRS 222
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV + ++ GAC+G RG+RV ++ +L EKIDI+ +S D A +V N+L P+ V
Sbjct: 223 KVAVQAKVKGVNAKGACIGPRGARVTNIMQQLGGEKIDIIEYSADPAKYVGNSLAPSKVV 282
Query: 298 KVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354
+V + D + V VP QLSLAIG+ GQN RLA++LTGW IDI ++ D+ +
Sbjct: 283 RVEVLDLEGQAARVTVPDYQLSLAIGKEGQNARLAARLTGWKIDIHSDAADAAADTEQ 340
>gi|33865134|ref|NP_896693.1| transcription elongation factor NusA [Synechococcus sp. WH 8102]
gi|33638818|emb|CAE07115.1| N utilization substance protein A [Synechococcus sp. WH 8102]
Length = 475
Score = 247 bits (630), Expect = 4e-63, Method: Composition-based stats.
Identities = 136/456 (29%), Positives = 216/456 (47%), Gaps = 34/456 (7%)
Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57
+ D ++ EK + VV + + +++ K + S+ V ++ E
Sbjct: 12 LIDDISEEKKLPPQVVEAALREALLKGYERYRRTMYLGISEDPFDEEYFSNFDVGLDLEE 71
Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115
+ +VEEVE+ QI+L+ G V + P DFGR+A + K
Sbjct: 72 EGYRVLASKIIVEEVESEDHQIALQEVMQVADDAQEGDTVVLDVTPEKEDFGRMAAATTK 131
Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169
QV+ QK+R+ +R EF D +++ V R E +VI+ + + + R +
Sbjct: 132 QVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELPRRD 191
Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228
+ +N R K ++ +V +RGPQ+ +SR++ +V LF EVPEI G V++ A
Sbjct: 192 QLPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRSNAGLVVYLFENEVPEIQEGSVRIVA 251
Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281
V+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ WS
Sbjct: 252 VAREANPPSRSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRWSQ 311
Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340
D ++ N+L PA V V +D V+VP +QLSLAIGR GQNVRLA++LTGW +D
Sbjct: 312 DPGQYIANSLSPARVEMVRLVDPVGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKLD 371
Query: 341 IITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEG 400
I E + + + ++ A +A ++ E+ +
Sbjct: 372 IKNSTEYDQSAEDAVVAELISQREQEEALQMEAEERLAAE-QAARAEEDARLRELYPLPE 430
Query: 401 FDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE 436
DE+ + E + ++ E SEE
Sbjct: 431 DDEDYVEG--DQLGESEQTEATASEEMPGEEPTSEE 464
>gi|332707468|ref|ZP_08427516.1| NusA antitermination factor [Lyngbya majuscula 3L]
gi|332353765|gb|EGJ33257.1| NusA antitermination factor [Lyngbya majuscula 3L]
Length = 369
Score = 247 bits (630), Expect = 4e-63, Method: Composition-based stats.
Identities = 114/350 (32%), Positives = 184/350 (52%), Gaps = 30/350 (8%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARS-----------LYGTM--SDIRVEINP 55
L + + ++ ++ R V + +++ K + + V+++
Sbjct: 9 LKAMIEEISQSHNLPRSAVQQALREALLKGYERYRRSQRLDQRFHFDEEYFDNFEVDLDI 68
Query: 56 ETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQS 113
E + +VEEV+N QISLK ++ +G V + P +FGR+A
Sbjct: 69 EEEGFRVLSTKTIVEEVQNSDHQISLKEVQEVASEAQLGDSVVLDVTPDQGEFGRMAAIQ 128
Query: 114 AKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRR 167
KQV+ QK+R+ +R EF+D G ++ R E +VI+ L + + +
Sbjct: 129 TKQVLSQKLRDQQRKLIKEEFQDLEGTVLQSRSLRFEQQSVIMALSSGFGRPEVEAELPK 188
Query: 168 DETISRENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQV 226
E + +N R K Y+ VR RGPQ+++SR +V LF EVPEI + +V++
Sbjct: 189 REQLPNDNYRINSTFKVYLKKVREGPHRGPQLVVSRAAAGLVVDLFSNEVPEIDDEVVRI 248
Query: 227 KAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVW 279
AV+R+ G R K+AV + + +DPVGAC+G RGSR+Q VV ELR EKID++ W
Sbjct: 249 VAVAREANPPSRHVGPRTKIAVDTLERDVDPVGACIGARGSRIQVVVNELRGEKIDVIRW 308
Query: 280 SPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNV 328
SPD +T++ NAL PA V +V +++ + + V+V ++QLSLAIG+ GQN
Sbjct: 309 SPDPSTYIANALSPAQVDQVLLVNPEERQAHVLVAEDQLSLAIGKEGQNS 358
>gi|289809601|ref|ZP_06540230.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 258
Score = 246 bits (629), Expect = 5e-63, Method: Composition-based stats.
Identities = 101/275 (36%), Positives = 157/275 (57%), Gaps = 18/275 (6%)
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
+ ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V
Sbjct: 1 MKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIV 60
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+DED +++ V L+ AIGR GQNV LASQL+GW ++++T ++ Q + + +
Sbjct: 61 VDEDKHTMDIAVEAGNLAQAIGRNGQNVHLASQLSGWELNVMTVDDLQAKHQAEAHAAIE 120
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L +
Sbjct: 121 IFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALATL 180
Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
+ + + +++L ++ G+D + L G+ T+EDLA +DDL
Sbjct: 181 AQDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIE------ 234
Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ +I+ AR + W E
Sbjct: 235 -----------GLTDEKAGELIMAAR-NICWFGDE 257
>gi|47093946|ref|ZP_00231683.1| N utilization substance protein A [Listeria monocytogenes str. 4b
H7858]
gi|47017684|gb|EAL08480.1| N utilization substance protein A [Listeria monocytogenes str. 4b
H7858]
Length = 248
Score = 246 bits (628), Expect = 7e-63, Method: Composition-based stats.
Identities = 91/245 (37%), Positives = 155/245 (63%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E
Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER
Sbjct: 64 AVEQVFDSRLEISMEEAHKLNPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+
Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++
Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243
Query: 248 IDPVG 252
+DPVG
Sbjct: 244 VDPVG 248
>gi|116073742|ref|ZP_01471004.1| transcription elongation factor NusA [Synechococcus sp. RS9916]
gi|116069047|gb|EAU74799.1| transcription elongation factor NusA [Synechococcus sp. RS9916]
Length = 493
Score = 246 bits (628), Expect = 7e-63, Method: Composition-based stats.
Identities = 133/460 (28%), Positives = 214/460 (46%), Gaps = 34/460 (7%)
Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57
+ + ++ EK + VV S + +++ K + S+ V ++ +
Sbjct: 12 LIEDISEEKKLPPQVVESALREALLKGYERYRKTLYLGINDDPFDEEYFSNFDVALDLDE 71
Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115
+ +VEEVE+ QI+L +G V + P +FGR+A + K
Sbjct: 72 EGYRVLASKIIVEEVESDDHQIALAEVMQVADDAQVGDTVVLDVTPEKEEFGRMAAATTK 131
Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169
QV+ QK+R+ +R EF D +++ V R E +VI+ + + + R +
Sbjct: 132 QVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELPRRD 191
Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228
+ +N R K ++ +V +RGPQ+ +SR + +V LF EVPEI G V++ A
Sbjct: 192 QLPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRANAGLVVYLFENEVPEIQEGSVRIVA 251
Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281
V+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ WS
Sbjct: 252 VAREANPPSRSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRWSQ 311
Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340
D ++ N+L PA V V +D V+VP +QLSLAIGR GQNVRLA++LTGW ID
Sbjct: 312 DPGQYIANSLSPARVEMVRLVDPVGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371
Query: 341 IITEEEDSINRQKDFNERTQFFMQAIN-VDEIIAHLLVAEGFADVEELACVKISEIASIE 399
I +E + + + L AE ++ E+ +
Sbjct: 372 IKNSQEYDQASEDAVVAELISQREEEEALQREAEERLAAE--QAARAEEDARLRELYPLP 429
Query: 400 GFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCS 439
DE+ E E ++ + +++ +
Sbjct: 430 EDDEDYVEEGSEIDVEAVDAGEESVEGDQPAAEAETSVED 469
>gi|76496360|gb|ABA43691.1| NusA [Acholeplasma palmae]
Length = 363
Score = 246 bits (627), Expect = 9e-63, Method: Composition-based stats.
Identities = 107/363 (29%), Positives = 184/363 (50%), Gaps = 17/363 (4%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
M+S + +AVA E+ +++D VL + + +G RVEI + +I
Sbjct: 1 MISKD---FFNTIEAVADERGLNKDQVLEAFEKGLIAGCKKAHGV-RSCRVEIKEDKSEI 56
Query: 61 SLFRLLEVVEE---VEN--------YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRV 109
L++ V++E E+ I+++ A++ + G ++ + P DF
Sbjct: 57 LLYKQYYVLDEDTLEEDMTSNPLNKEYTFITVEDAKEMKTRVKPGQLIEIKVDPKDFNLY 116
Query: 110 AVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRD 168
A++ K +++ +++ Y FK E+++ V V+ ++L ++ +
Sbjct: 117 AIKDFKNRFNEELTNKQKETIYNHFKAVEHEMVTARVTDVDDNYYKLELEKEMTTLLPKK 176
Query: 169 ETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228
E + + DR+K YI +V+ + P+V +SR + +L VPEI GI+ +
Sbjct: 177 EALPNDVFHVNDRIKVYITEVQSTTKWPKVFVSRVQNGLITRLLEELVPEIKEGIISIMG 236
Query: 229 VSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVI 288
+SRD G R+K+ V S D +DP+GACVG G R++ +V + EKID+ WS + +
Sbjct: 237 ISRDAGDRSKIGVRSEDPKVDPIGACVGEGGQRIREIVKAISGEKIDLFRWSDNEQELIA 296
Query: 289 NALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347
NAL+PA V V ++ IVP +QLSLAIG+ GQNV+LA Q +GW+IDI +E +
Sbjct: 297 NALQPAKVVAVTKVNPKEKSALAIVPDDQLSLAIGKLGQNVKLAVQASGWSIDIKSETQA 356
Query: 348 SIN 350
Sbjct: 357 QQE 359
>gi|308233945|ref|ZP_07664682.1| transcription termination factor NusA [Atopobium vaginae DSM 15829]
gi|328943957|ref|ZP_08241422.1| transcription termination factor NusA [Atopobium vaginae DSM 15829]
gi|327491926|gb|EGF23700.1| transcription termination factor NusA [Atopobium vaginae DSM 15829]
Length = 414
Score = 245 bits (626), Expect = 1e-62, Method: Composition-based stats.
Identities = 120/368 (32%), Positives = 199/368 (54%), Gaps = 45/368 (12%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
+++N +E L D + + +D ++ + ++ K + RV I+ TG +
Sbjct: 1 MASNMVEAL--ID-ICQKTHLDELYIVDRLEQTLAKNYADILHLEHGARVTIDRVTGKVY 57
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIG---GVVSDPLPPMDFGRVAVQSAKQVI 118
++ ++ +P + G + P + R+ VQ KQ +
Sbjct: 58 VY------------------ELIPKGEPDPETGEYQDFDERDVTPKEASRLVVQHTKQEL 99
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIR----------R 167
+ +R A R + + EF +VG++I+GTV + I+ + + + R
Sbjct: 100 AEIIRSAGRQQIFEEFSKRVGDLITGTVLQTTSDFAIIKIRDGVEAELPYFDPHRYPDER 159
Query: 168 DETISRENLRPGDRVKSYIYDVRREQRGPQ----------VLLSRTHPQFMVKLFHMEVP 217
+E + E+ R+++ I +VR Q +++SRTHP + +LF +EVP
Sbjct: 160 NERPANEHYAHNQRLRALIVEVRDPHANQQQIRGERQRPSIVVSRTHPDLISRLFELEVP 219
Query: 218 EIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIV 277
EI++G+V + +V+R+PG R+K+AV S+D +DPVGACVG +GSRV+ VV+ELR E++D+V
Sbjct: 220 EIFDGVVSIASVAREPGIRSKIAVSSTDPHLDPVGACVGPKGSRVRTVVSELRGERVDVV 279
Query: 278 VWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337
+WS D A V NAL PA V++V++D++ VIVP +QLSLAIG+ GQN RLA++LTG
Sbjct: 280 MWSDDPAINVANALSPAKVSRVLVDKENNYATVIVPDDQLSLAIGKEGQNARLAARLTGM 339
Query: 338 TIDIITEE 345
IDI E
Sbjct: 340 HIDIKNET 347
>gi|78184171|ref|YP_376606.1| transcription elongation factor NusA [Synechococcus sp. CC9902]
gi|78168465|gb|ABB25562.1| NusA antitermination factor [Synechococcus sp. CC9902]
Length = 485
Score = 245 bits (626), Expect = 1e-62, Method: Composition-based stats.
Identities = 132/429 (30%), Positives = 205/429 (47%), Gaps = 34/429 (7%)
Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57
+ D ++ EK + VV + + +++ K + S+ V ++ E
Sbjct: 12 LIDDISEEKKLAPQVVEAALREALLKGYERYRRTLYIGISEDPFDEDYFSNFDVGLDLEE 71
Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115
+ +V+EVE+ QI+L G V + P DFGR+A + K
Sbjct: 72 EGYRVLASKIIVDEVESEDHQIALAEVMQVAEDAQSGDTVVLDVTPEKEDFGRMAAATTK 131
Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169
QV+ QK+R+ +R EF D +++ V R E ++I+ + + + R +
Sbjct: 132 QVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSIIMAVSSGLGRPEVEAELPRRD 191
Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228
+ +N R K ++ +V +RGPQ+ +SR++ +V LF EVPEI G V++ A
Sbjct: 192 QLPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRSNAGLVVYLFENEVPEIQEGSVRIVA 251
Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281
V+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ WS
Sbjct: 252 VAREANPPSRSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRWSQ 311
Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340
D ++ N+L PA V V +D V+VP +QLSLAIGR GQNVRLA++LTGW ID
Sbjct: 312 DPGQYIANSLSPARVEMVRLVDPAGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371
Query: 341 IITEEEDSIN-RQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIE 399
I E E + + + L E ++ E+ +
Sbjct: 372 IKNSTEYDQPAEDAVVAELISQREEEEALQQEAEERLAVEQ--AARAEEDARLRELYPLP 429
Query: 400 GFDEETAVE 408
DE+ E
Sbjct: 430 EDDEDYVEE 438
>gi|170077376|ref|YP_001734014.1| transcription elongation factor NusA [Synechococcus sp. PCC 7002]
gi|169885045|gb|ACA98758.1| transcription termination factor NusA [Synechococcus sp. PCC 7002]
Length = 420
Score = 243 bits (621), Expect = 4e-62, Method: Composition-based stats.
Identities = 128/371 (34%), Positives = 200/371 (53%), Gaps = 30/371 (8%)
Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSL-----------YGTM--SDIRVEINPET 57
+ + ++ ++ + V + +++ K + + VE++ E
Sbjct: 11 ALVEEISDRHNLPQSAVHEALREALLKGYERYRRSLTLNQATPFAEDYFDNFEVELDLED 70
Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115
+ +VEEVEN QI+L+ ++ +G V + P DFGR+A K
Sbjct: 71 EGFRVLATKVIVEEVENSDHQIALQEVQEVANEAQLGDSVILDVTPEQSDFGRMAAIQTK 130
Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDE 169
QV++QK+R+ +R EF++ GE++ V R E V++ + ++ + R E
Sbjct: 131 QVLLQKLRDQQRKLVQEEFQELEGEVLQARVLRFERNFVVMAVTSAFGQPETEAELPRRE 190
Query: 170 TISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228
+ +N R K Y+ V+ RGPQ+++SR +V LF EVPEI IV++ A
Sbjct: 191 QLPNDNYRANTTYKVYLKHVKEGSHRGPQLVVSRAAADLVVYLFANEVPEIEEEIVRIVA 250
Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281
V+R+ G R K+AV + + +DPVGAC+G RGSR+QAVV ELR EKID++ WSP
Sbjct: 251 VAREANPPGRYVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGEKIDVIRWSP 310
Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340
D AT++ NAL PA V V+ +D + + V+VP+ QLSLAIG+ GQNVRLA++LTGW ID
Sbjct: 311 DPATYIANALSPARVDGVILVDAEERQATVLVPENQLSLAIGKEGQNVRLAARLTGWKID 370
Query: 341 IITEEEDSINR 351
I + +
Sbjct: 371 IKDSAKYEAEQ 381
>gi|13507893|ref|NP_109842.1| transcription elongation factor NusA [Mycoplasma pneumoniae M129]
gi|2499338|sp|P75591|NUSA_MYCPN RecName: Full=Transcription elongation protein nusA
gi|1674384|gb|AAB96325.1| N-utilization substance protein A-like protein [Mycoplasma
pneumoniae M129]
Length = 540
Score = 242 bits (618), Expect = 1e-61, Method: Composition-based stats.
Identities = 110/445 (24%), Positives = 215/445 (48%), Gaps = 16/445 (3%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
LLQ+ VA K++ D V+ + ++ + + ++ V I+ G + + +L +V
Sbjct: 12 LLQLIKNVAETKNLAIDDVVLCLKTALAQTYKKHLNY-VNVEVNIDFNKGLMQIEQLFDV 70
Query: 69 VEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
V++ + ++ L A+ +P++++GGV+ P+ D + + QK+ E
Sbjct: 71 VDDNNEDYDDFLEMPLSEAKKLNPNLEVGGVLRKPVSLKDIKGDLISKMVLLFNQKINET 130
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYG------NVIVDLGNSDGVIRRDETISRENLRPG 179
+F ++VG++I V+ ++ IV+L + G + + E E L G
Sbjct: 131 AFKTVMSDFINEVGQVIEARVEDIDTNKDGGLKGYIVNLETTKGYMPKRELSKGEKLDIG 190
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
+ I +++++ + LSR+ + + L + PEI NG +++K + R PG+++K+
Sbjct: 191 KKYLFVIKEIQKQSSMWPITLSRSDSRLLEFLLNSNTPEIANGTIEIKKMERSPGTKSKV 250
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV S D +DP+ A +G +G R++ + E E IDIV+W+ D F++NA+ PA V
Sbjct: 251 AVISKDPVVDPIAAILGPKGERIRGISEEFNGEIIDIVIWNEDKLKFLVNAVLPAEVVGY 310
Query: 300 VL---DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356
+ DE IE++VP Q++ G +G N+RL S LTGW+ + E+D+ + +F
Sbjct: 311 NILQDDERDTSIEIVVPANQIANVFGFKGINIRLISNLTGWSSVDVYTEKDAAEQGIEFT 370
Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416
+ + + + ++LA K+ + D+E V++ +A E
Sbjct: 371 RVNFQPQGIFGIKKRR-DKISNNPRNNNQQLASDKVFYTSKANVVDDEIIVDLAKQA-EA 428
Query: 417 LEGIDITLQKKIRELGVSEELCSIP 441
I + EL + +EL ++
Sbjct: 429 KRVKQIKQEATKPELQLQQEL-NLE 452
>gi|268679068|ref|YP_003303499.1| transcription termination factor NusA [Sulfurospirillum deleyianum
DSM 6946]
gi|268617099|gb|ACZ11464.1| transcription termination factor NusA [Sulfurospirillum deleyianum
DSM 6946]
Length = 374
Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats.
Identities = 109/356 (30%), Positives = 196/356 (55%), Gaps = 9/356 (2%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
++ I +++A+EK +D + V + + ++ K A+ +YG + EI+ T + L++ + V
Sbjct: 4 IVDIIESIAHEKGLDINEVRNTVTMALVKTAKKIYGAEYEYGAEIDSATKTLKLYQKVIV 63
Query: 69 VEEVEN-----YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
V + I++K A++ DP I+IG ++ LP + GR A + ++ + ++
Sbjct: 64 VSPDDERLLDGNENFIAIKEAKEVDPEIEIGDELTYELPLDNLGRTAAATLQRELEYHIQ 123
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRV 182
+ +++ VG+ + G+V RV+ N +++ V+ R I E + G+ V
Sbjct: 124 RLLEHNIFDKYQKMVGKTVFGSVVRVDNDENTYIEIDEIRAVLPRKNRIKGEKFKVGNVV 183
Query: 183 KSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
KS I V + +G V LSRT P+F+ L +EVPEI +G++++ +R PG RAK+++
Sbjct: 184 KSVIRKVLIDKAQGMYVELSRTSPKFLESLLELEVPEIKDGLIKIMGSARIPGERAKISL 243
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S +ID VGA VG +G+R+ AV EL +E ID + +S F+ AL PAI++ V +
Sbjct: 244 VSFHPNIDAVGATVGTKGARINAVSKELHNENIDCIEFSSVPEIFISRALSPAIISNVKI 303
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
+ V +P +Q S AIG+ G N+RL S LTG+ I+++ + + + +E
Sbjct: 304 --QNNKAIVTLPSDQKSKAIGKNGINIRLTSMLTGFEIELVESGSGTSSTENTSDE 357
>gi|26553563|ref|NP_757497.1| transcription elongation factor NusA [Mycoplasma penetrans HF-2]
gi|26453569|dbj|BAC43901.1| N-utilization substance protein A [Mycoplasma penetrans HF-2]
Length = 597
Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats.
Identities = 105/346 (30%), Positives = 187/346 (54%), Gaps = 10/346 (2%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
L+ D +A EK ++ +++++ +++K+ DI V ++ I LF V
Sbjct: 6 FLENLDKIAKEKDTSKENIVNILKTALEKSYLKE-NPDLDIEVVVDLNKESIKLFEKRVV 64
Query: 69 VEEVENY---TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
V++ E+ +I++ A++ S +G VS + F R Q++ + +
Sbjct: 65 VDKSEDEIDDDKEINISEAQELKKSYKLGDTVSTEVNIDKFERRITSHFAQILTHNLNDI 124
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
+ Y E+KDKVG II V++V+ V V+LG++ GV+ R E I E L+PG
Sbjct: 125 SNSKVYEEWKDKVGNIIRAEVEKVDNRLVEVNLGSTKGVVLRSEQIPGEELQPGQSYLFL 184
Query: 186 IYDVR-REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
I +V+ ++ +G ++LSR + L E+ EI +GI+++K +SR G + K+A+ S
Sbjct: 185 IKEVKSQQTKGWPIILSRADEGLLRYLLKTEISEISDGIIEIKRISRIVGYKTKVAILSR 244
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
+D VG VG +G R++ + + L +E+ID++++ D F++NA P + V + +D
Sbjct: 245 VPGVDAVGTAVGPKGERIKKISSTLNNERIDVILYDEDPKQFLVNACHPEKIVGVEITDD 304
Query: 305 V-----GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345
+ ++ P+E L IG+ G NVRL S+LTGW+IDII+E+
Sbjct: 305 EDIPGSKIVTIVCPEESLIKLIGKNGINVRLLSKLTGWSIDIISEK 350
>gi|284929277|ref|YP_003421799.1| transcription termination factor NusA [cyanobacterium UCYN-A]
gi|284809721|gb|ADB95418.1| transcription termination factor NusA [cyanobacterium UCYN-A]
Length = 387
Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats.
Identities = 125/361 (34%), Positives = 198/361 (54%), Gaps = 29/361 (8%)
Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL-----------YGTM-SDIRVEINPETGD 59
+ ++ ++ + V + +++ K Y + VE++ E
Sbjct: 12 MIGEISQRHNLPKPAVQEALREALLKGYERFRRSQNLDRQPFYDEYFDNFEVELDTEEEG 71
Query: 60 ISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAKQV 117
+ +++E VEN ISL+ ++ +G V + P DFGR+A KQV
Sbjct: 72 FRILSTKKIMENVENIDHHISLQEVQEVASEAQLGDEVVLDVTPEQKDFGRMAAIQTKQV 131
Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS------DGVIRRDETI 171
++QK+R+ +R EF++ G +++ V R E ++IV + ++ + +I + E +
Sbjct: 132 LLQKLRDQQRKLIQEEFQELEGTVLNARVLRFERQDIIVAVQSTFGQPEVEAIIPKQEQL 191
Query: 172 SRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVS 230
+N R K + VR RGPQ+L+SR +V +F +EVPEI IV++ AVS
Sbjct: 192 PNDNYRANSSFKILLKKVREGSHRGPQLLVSRAAAGLVVDMFSIEVPEIEEDIVRIVAVS 251
Query: 231 RDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283
R+ G R K+AV + + +DPVGAC+G RGSR+QAVV ELR EKID++ WSPD
Sbjct: 252 REANPPSRYVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGEKIDVIRWSPDP 311
Query: 284 ATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342
AT++ NAL PA + +V+ + D ++V ++QLSLAIG+ GQNVRLA++LTGW IDI
Sbjct: 312 ATYIANALSPARIDEVILISPDERHALILVAEDQLSLAIGKEGQNVRLAARLTGWKIDIK 371
Query: 343 T 343
Sbjct: 372 N 372
>gi|72382861|ref|YP_292216.1| transcription elongation factor NusA [Prochlorococcus marinus str.
NATL2A]
gi|72002711|gb|AAZ58513.1| transcription termination factor NusA [Prochlorococcus marinus str.
NATL2A]
Length = 497
Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats.
Identities = 130/470 (27%), Positives = 224/470 (47%), Gaps = 46/470 (9%)
Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57
+ + ++ EK + VV + + +++ K + S+ V ++ E
Sbjct: 12 LIEDISEEKKLPSQVVEAALREALLKGYERYRRTLYLGISEDPFEEDYFSNFDVGLDLEE 71
Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115
+ +VE+VE+ QI++ +G V + P DFGR+A + K
Sbjct: 72 EGYRVLASKIIVEDVESDDHQIAIAEVMQVADDAQVGDTVVLDVTPEKEDFGRMAAATTK 131
Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169
QV+ QK+R+ +R EF D +++ V R E +VI+ + + + R +
Sbjct: 132 QVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELPRRD 191
Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228
+ +N R K ++ +V +RGPQ+ +SR++ +V LF EVPEI G V++ A
Sbjct: 192 QLPNDNYRANATFKVFLKEVSETPRRGPQLFVSRSNAGLVVYLFENEVPEIQEGSVRIVA 251
Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281
V+R+ G R K+AV S + +DPVGAC+G RG+R+Q VV ELR EKID++ WS
Sbjct: 252 VAREANPPSRAVGPRTKVAVDSIEREVDPVGACIGARGARIQQVVNELRGEKIDVIRWSS 311
Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340
D ++ N+L PA V V +D + V+VP +QLSLAIGR GQNVRLA++LTGW ID
Sbjct: 312 DPVQYICNSLSPARVEVVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371
Query: 341 IIT--------------EEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEE 386
I E ++ + ++A + E + E+
Sbjct: 372 IKNSQEYDQATEDSEVAELISQREEEESLQREAEKRLEAEQTARAEEDARLRELYPLPED 431
Query: 387 LACVKISEIASIEGFDEETAVEIQGRAREY-LEGIDITLQKKIRELGVSE 435
+ E+++I+ + E+ + + + ++ D ++ + + +
Sbjct: 432 EEDFQNEELSNIDSNETESESDFESSEIDSNIDTDDAETEESDIDETIED 481
>gi|25028436|ref|NP_738490.1| transcription elongation factor NusA [Corynebacterium efficiens
YS-314]
gi|23493721|dbj|BAC18690.1| putative transcriptional termination/antitermination factor
[Corynebacterium efficiens YS-314]
Length = 359
Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats.
Identities = 125/347 (36%), Positives = 199/347 (57%), Gaps = 35/347 (10%)
Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAA----RSLYGTMSDIRVEINPETGDISLFRLL 66
Q A+ EK I + ++ +A+++ + S S RV+I+ TG +++
Sbjct: 33 QALRAIEKEKGIRVEDMIRTIANALLHSYLDNRESDVPESSKARVDIDVSTGAVAV---- 88
Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
+V E ++ S P +FGRV+ ++ + I++++REAE
Sbjct: 89 -IVTEFDDEGTISS-----------------EYDDTPSNFGRVSARAVRDAIVRRLREAE 130
Query: 127 RDRQYLEFKDKVGEIISGTVKRV----EYGNVIVDLG----NSDGVIRRDETISRENLRP 178
+R + + + G ++SG V+ E G V+V LG + DG++ E I E L+
Sbjct: 131 AERAFDAYAEYEGTVMSGLVQADSRAAERGIVVVQLGTETDSQDGILLPAEQIPGEKLKH 190
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
GDRVKSY+ V + G Q+ LSRTHP+ + +LF +E+PE+ +G V++ A+SR+ G R+K
Sbjct: 191 GDRVKSYVVGVGKGPVGIQINLSRTHPELVRRLFELEIPEVADGSVEIVAISREAGHRSK 250
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++ +++ GAC+G RG RV ++ EL EKIDI+ +S D ATFV NAL P+ V
Sbjct: 251 VAVRATVKNLNAKGACIGPRGQRVSNIMRELGGEKIDIIDYSDDPATFVGNALAPSKVVS 310
Query: 299 VVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344
V + D + +V+VP QLSLAIG+ GQN RLA++LTGW IDI ++
Sbjct: 311 VEIVDAEQQVAKVVVPDYQLSLAIGKEGQNARLAARLTGWKIDIHSD 357
>gi|255323481|ref|ZP_05364612.1| transcription termination factor NusA [Campylobacter showae RM3277]
gi|255299518|gb|EET78804.1| transcription termination factor NusA [Campylobacter showae RM3277]
Length = 366
Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats.
Identities = 109/340 (32%), Positives = 189/340 (55%), Gaps = 8/340 (2%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ I +++A EK ++ + V + +I A+ +YG + I+ T + L++ + V
Sbjct: 4 IADIIESIANEKGLEIEDVKERVIRAIINTAKKIYGENYEYDAVIDNATKTLHLYQKITV 63
Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
VE+ E+ +S+ A+ D ++IG ++ L + GR A Q+ + + ++
Sbjct: 64 VEDGDERLAEDNEHFLSISEAKKVDSGVEIGDELTYELSTDNLGRTAAQTLHKELEYHIQ 123
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRV 182
++ + +++D VG ++ G+V RV+ N +++ V+ R I E +PGD V
Sbjct: 124 RLMEEKIFQKYQDMVGHMVFGSVTRVDSDENTFIEIDELRAVMPRKNRIKGEKFKPGDVV 183
Query: 183 KSYIYDVRREQRG-PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
K+ I V ++ +V LSRT P+F+ L EVPEI +G+V + A +R PG RAK+A+
Sbjct: 184 KAVIKSVYIDKSMGIKVELSRTSPKFLEALLKAEVPEIKDGLVLIAASARIPGERAKVAL 243
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
++ ++DPVGA VG +G R+ AV EL E ID + +S + A + A+ PAI++ V +
Sbjct: 244 VATSPNVDPVGATVGTKGVRINAVTKELNGENIDAIEYSAEPAILITRAMAPAIISSVKI 303
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
ED + +V + Q S AIG+ G N+RLAS LTG I++
Sbjct: 304 GEDNKAVVSLVTE-QKSKAIGKSGINIRLASMLTGHEIEL 342
>gi|124026598|ref|YP_001015713.1| transcription elongation factor NusA [Prochlorococcus marinus str.
NATL1A]
gi|123961666|gb|ABM76449.1| N utilization substance protein A [Prochlorococcus marinus str.
NATL1A]
Length = 497
Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats.
Identities = 131/409 (32%), Positives = 203/409 (49%), Gaps = 32/409 (7%)
Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57
+ + ++ EK + VV + + +++ K + S+ V ++ E
Sbjct: 12 LIEDISEEKKLPSQVVEAALREALLKGYERYRRTLYLGISEDPFEEDYFSNFDVGLDLEE 71
Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115
+ +VEEVE+ QI++ +G V + P DFGR+A + K
Sbjct: 72 EGYRVLASKIIVEEVESDDHQIAIAEVMQVADDAQVGDTVVLDVTPEKEDFGRMAAATTK 131
Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169
QV+ QK+R+ +R EF D +++ V R E +VI+ + + + R +
Sbjct: 132 QVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELPRRD 191
Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228
+ +N R K ++ +V +RGPQ+ +SR++ +V LF EVPEI G V++ A
Sbjct: 192 QLPNDNYRANATFKVFLKEVSETPRRGPQLFVSRSNAGLVVYLFENEVPEIQEGSVRIVA 251
Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281
V+R+ G R K+AV S + +DPVGAC+G RG+R+Q VV ELR EKID++ WS
Sbjct: 252 VAREANPPSRAVGPRTKVAVDSIEREVDPVGACIGARGARIQQVVNELRGEKIDVIRWSS 311
Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340
D ++ N+L PA V V +D + V+VP +QLSLAIGR GQNVRLA++LTGW ID
Sbjct: 312 DPVQYICNSLSPARVEVVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371
Query: 341 IITEEEDSINRQKDFNERTQFFMQAIN-VDEIIAHLLVAEGFADVEELA 388
I +E + + + L AE A EE A
Sbjct: 372 IKNSQEYDQATEDSEVAELISQREEEESLQREAEKRLEAEQTARAEEDA 420
>gi|166364176|ref|YP_001656449.1| transcription elongation factor NusA [Microcystis aeruginosa
NIES-843]
gi|166086549|dbj|BAG01257.1| transcription termination factor [Microcystis aeruginosa NIES-843]
Length = 398
Score = 241 bits (614), Expect = 3e-61, Method: Composition-based stats.
Identities = 127/387 (32%), Positives = 202/387 (52%), Gaps = 30/387 (7%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARS-----------LYGTM--S 47
M + N L + + ++ ++ ++ V + +++ K + +
Sbjct: 1 MATVNLPGLKIMLEEISQRHNLPKNAVQEALREALIKGYERYRRAQSLEKAAQFHEDYFN 60
Query: 48 DIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPP--MD 105
+ VE++ E + +VEEV N I LK ++ +G V + P +
Sbjct: 61 NFDVELDVEEEGFRILSTKTIVEEVTNPDHHIGLKEVQEVADEAQLGDEVVLDVTPDQKE 120
Query: 106 FGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS---- 161
FGR+A KQV++QK+R+ +R EF+D G ++ V R E IV + ++
Sbjct: 121 FGRMAAIQTKQVLLQKLRDNQRKLIQEEFQDLEGTVLQARVVRFERQAAIVMVQSTYGQP 180
Query: 162 --DGVIRRDETISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPE 218
+ + + E + +N R K + V RGPQ+++SR +V LF EVPE
Sbjct: 181 EVEAELPKREQLPNDNYRANATFKVLLKKVLEGSHRGPQLIVSRAAAGLVVYLFANEVPE 240
Query: 219 IYNGIVQVKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRD 271
I IV++ AV+R+ GSR K+AV + + +DPVGAC+G RGSR+QAVV ELR
Sbjct: 241 IEEEIVRIVAVAREANPPSRHVGSRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRG 300
Query: 272 EKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRL 330
EKID++ WSPD AT++ NAL PA + +V + + + V+V ++QLSLAIG+ GQNVRL
Sbjct: 301 EKIDVIRWSPDPATYIANALSPARIDQVLFTNAEERQALVLVAQDQLSLAIGKEGQNVRL 360
Query: 331 ASQLTGWTIDIITEEEDSINRQKDFNE 357
A++LTGW IDI ++ +E
Sbjct: 361 AARLTGWKIDIKDIVLYKGEQEVKTDE 387
>gi|152993777|ref|YP_001359498.1| transcription elongation factor NusA [Sulfurovum sp. NBC37-1]
gi|151425638|dbj|BAF73141.1| transcription termination factor NusA [Sulfurovum sp. NBC37-1]
Length = 387
Score = 240 bits (613), Expect = 4e-61, Method: Composition-based stats.
Identities = 107/364 (29%), Positives = 197/364 (54%), Gaps = 18/364 (4%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+L I DA+A+EK+I R+ L +++ A+ L S+ V I+ +T S+ +++ +
Sbjct: 4 ILDIIDAIAHEKNISREHALEAFKEALVNTAKKLTSFTSNFEVTIDNDTKTYSVQKVITI 63
Query: 69 V-EEVENYTCQ---------------ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQ 112
V ++ E + + L A++ D S++IG +++ D+GR A
Sbjct: 64 VADDDEQLFVEVGKEDNKEMIPSDAVMPLSEAKEFDESLEIGDKLTEEFVLEDYGRTASA 123
Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETI 171
+ + + ++ + ++++KVG ++ GTV R++ N V++G G++ I
Sbjct: 124 NLFRELEYHIQRRIEQDLFEKYREKVGTVMLGTVNRIDADDNTHVEIGELKGILTLRNRI 183
Query: 172 SRENLRPGDRVKSYIYDVRREQRGP-QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVS 230
E + GD +++ + V + + + L+RT P+F+ L EVPEI +G+V++ +
Sbjct: 184 KGEKFKRGDTIRALLRYVSVDPQYGLFLELTRTSPKFLEALMASEVPEIADGVVEIVNAA 243
Query: 231 RDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA 290
R PG RAK+A+ + ++DP+GA VG++G R+ AV EL E ID + +SP F+ A
Sbjct: 244 RIPGERAKIALKTEQMNVDPIGAAVGVKGVRINAVSEELNGENIDCIEYSPIPEIFITRA 303
Query: 291 LRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350
L PAI + +D+D + V + +Q + AIG+ G N+RLAS LTG+TI++ E +
Sbjct: 304 LSPAITQSIKVDQDEKKAVVNITGDQKAKAIGKSGINIRLASMLTGYTIELNEVEGVTER 363
Query: 351 RQKD 354
+ +
Sbjct: 364 QPES 367
>gi|113954345|ref|YP_731568.1| transcription elongation factor NusA [Synechococcus sp. CC9311]
gi|113881696|gb|ABI46654.1| transcription termination factor NusA [Synechococcus sp. CC9311]
Length = 501
Score = 240 bits (613), Expect = 4e-61, Method: Composition-based stats.
Identities = 129/409 (31%), Positives = 200/409 (48%), Gaps = 32/409 (7%)
Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57
+ + ++ EK + VV + + +++ K + S+ V ++ +
Sbjct: 12 LIEDISEEKKLAPQVVEAALREALLKGYERYRRTLYLGISEDPFDEEYFSNFDVALDLDE 71
Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115
+ +V+EVE+ QI+L G V + P DFGR+A + K
Sbjct: 72 EGYRVLASKIIVDEVESEDHQIALAEVMQVAEDAQAGDTVVLDVTPEKEDFGRMAAATTK 131
Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169
QV+ QK+R+ +R EF D +++ V R E ++I+ + + + R +
Sbjct: 132 QVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSIIMAVSSGLGRPEVEAELPRRD 191
Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228
+ +N R K ++ +V +RGPQ+ +SR + +V LF EVPEI G V++ A
Sbjct: 192 QLPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRANAGLVVYLFENEVPEIQEGSVRIVA 251
Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281
V+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ WS
Sbjct: 252 VAREANPPSRAVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRWSQ 311
Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340
D + ++ N+L PA V V +D + V+VP +QLSLAIGR GQNVRLA++LTGW ID
Sbjct: 312 DPSQYIANSLSPARVEVVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371
Query: 341 IITEEEDSINRQKDFNERTQFFMQAIN-VDEIIAHLLVAEGFADVEELA 388
I E + + + L E A EE A
Sbjct: 372 IKNSTEYDQTAEDAVVSELISQREEEEALQREAEERLAIEQAARAEEDA 420
>gi|16329287|ref|NP_440015.1| transcription elongation factor NusA [Synechocystis sp. PCC 6803]
gi|1651767|dbj|BAA16695.1| N utilization substance protein [Synechocystis sp. PCC 6803]
Length = 458
Score = 240 bits (613), Expect = 4e-61, Method: Composition-based stats.
Identities = 127/375 (33%), Positives = 198/375 (52%), Gaps = 28/375 (7%)
Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARS---------LYGTM--SDIRVEINPETGD 59
+ ++ ++ V + +++ K + ++ VE++ E
Sbjct: 11 AMISEISKRNNLPTTAVEEALREALLKGYERFRRSQLMGHQFPEEYFNNFEVELDTEEEG 70
Query: 60 ISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAKQV 117
+ +VEEVEN QISLK + +G V + P DFGR+A KQV
Sbjct: 71 FRVLSTKRIVEEVENSDQQISLKEVLEVAEEAQLGDEVVLDVTPEQKDFGRMAAIQTKQV 130
Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDETI 171
++QK+R+ +R EF+D G +++ R E ++IV + + + + E +
Sbjct: 131 LLQKLRDQQRKIIQEEFQDLEGTVLNARALRFERQSIIVAVQSSFGQPEVEAELPKREQL 190
Query: 172 SRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVS 230
+N R + Y+ VR QRGPQ+++SR +V LF +EVPEI +V++ AV+
Sbjct: 191 PNDNYRANSTFRVYLKRVREGSQRGPQLVVSRAAAGLVVDLFSVEVPEIEEEVVRIVAVA 250
Query: 231 RDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283
R+ G R K+AV + + +DPVGAC+G RGSR+ AVV ELR EKID++ WSPD
Sbjct: 251 REAKPPSPSVGPRTKIAVDTLERDVDPVGACIGARGSRIHAVVNELRGEKIDVIRWSPDP 310
Query: 284 ATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342
AT++ AL PA V +V + + VIV ++QLSLAIG+ GQNVRLA++LTGW IDI
Sbjct: 311 ATYIAQALSPARVDQVYLIHAEERHALVIVAEDQLSLAIGKEGQNVRLAARLTGWKIDIK 370
Query: 343 TEEEDSINRQKDFNE 357
E + +++
Sbjct: 371 DPETYARDKEAIEQS 385
>gi|159027908|emb|CAO89715.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 398
Score = 240 bits (613), Expect = 4e-61, Method: Composition-based stats.
Identities = 128/387 (33%), Positives = 203/387 (52%), Gaps = 30/387 (7%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARS-----------LYGTM--S 47
M + N L + + ++ ++ ++ V + +++ K + +
Sbjct: 1 MATVNLPGLKIMLEEISQRHNLPKNAVQEALREALIKGYERYRRSQSLEKAAQFHEDYFN 60
Query: 48 DIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--D 105
+ VE++ E + +VEEV N I LK ++ +G V + P +
Sbjct: 61 NFDVELDVEEEGFRILSTKTIVEEVTNPDHHIGLKEVQEVADEAQLGDEVVLDVTPDQRE 120
Query: 106 FGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS---- 161
FGR+A KQV++QK+R+ +R EF+D G ++ V R E IV + ++
Sbjct: 121 FGRMAAIQTKQVLLQKLRDNQRKLIQEEFQDLEGTVLQARVVRFERQAAIVMVQSTYGQP 180
Query: 162 --DGVIRRDETISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPE 218
+ + + E + +N R K + V QRGPQ+++SR +V LF EVPE
Sbjct: 181 EVEAELPKREQLPNDNYRANATFKVLLKKVLEGSQRGPQLIVSRAAAGLVVYLFANEVPE 240
Query: 219 IYNGIVQVKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRD 271
I IV++ AV+R+ GSR K+AV + + +DPVGAC+G RGSR+QAVV ELR
Sbjct: 241 IEEEIVRIVAVAREANPPSRHVGSRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRG 300
Query: 272 EKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRL 330
EKID++ WSPD AT++ NAL PA + +V + + + V+V ++QLSLAIG+ GQNVRL
Sbjct: 301 EKIDVIRWSPDPATYIANALSPARIDQVLFTNAEERQALVLVAQDQLSLAIGKEGQNVRL 360
Query: 331 ASQLTGWTIDIITEEEDSINRQKDFNE 357
A++LTGW IDI ++ +E
Sbjct: 361 AARLTGWKIDIKDIALYKGEQEVKTDE 387
>gi|218439319|ref|YP_002377648.1| transcription elongation factor NusA [Cyanothece sp. PCC 7424]
gi|218172047|gb|ACK70780.1| NusA antitermination factor [Cyanothece sp. PCC 7424]
Length = 405
Score = 240 bits (613), Expect = 4e-61, Method: Composition-based stats.
Identities = 130/393 (33%), Positives = 205/393 (52%), Gaps = 29/393 (7%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAA----------RSLYGTM--SD 48
M N L + D ++ ++ + V + +++ K ++ + +
Sbjct: 1 MTIVNLPGLKNMIDEISQRHNLPKSAVHEALREALLKGYERYRRAQSLEKNQFHDDYFEN 60
Query: 49 IRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPP--MDF 106
VE++ E + ++VE V N ISLK ++ +G V + P +F
Sbjct: 61 FDVELDTEEEGFRILSTKKIVEAVSNTDHHISLKEVQEVVSEAQLGDEVVLDVTPDQKEF 120
Query: 107 GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------N 160
GR+A KQV++QK+R+ +R EF+D +++ V R E VI+ +
Sbjct: 121 GRMAAIQTKQVLLQKLRDQQRKLIQEEFQDLESTVLTARVLRFERQAVIMAVQSAFGQPE 180
Query: 161 SDGVIRRDETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEI 219
+ + + E + +N R K + VR RGPQ+++SR +V LF EVPEI
Sbjct: 181 VEAELPKREQLPNDNYRANATFKVLLKKVREGSHRGPQLIVSRAAAGLVVYLFANEVPEI 240
Query: 220 YNGIVQVKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDE 272
+V++ AVSR+ GSR K+AV + + +DPVGAC+G RGSR+QAVV ELR E
Sbjct: 241 EEEVVRIVAVSREANPPSRYVGSRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGE 300
Query: 273 KIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLA 331
KID++ WSPD +T++ NAL PA V +V+L + D + V+V ++QLSLAIG+ GQNVRLA
Sbjct: 301 KIDVIRWSPDPSTYIANALSPARVDEVILTNPDERQALVLVAEDQLSLAIGKEGQNVRLA 360
Query: 332 SQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364
++LTGW IDI +++ + Q
Sbjct: 361 ARLTGWKIDIKDRAIYKADKENQTQDDQSEDHQ 393
>gi|307155148|ref|YP_003890532.1| NusA antitermination factor [Cyanothece sp. PCC 7822]
gi|306985376|gb|ADN17257.1| NusA antitermination factor [Cyanothece sp. PCC 7822]
Length = 396
Score = 239 bits (610), Expect = 8e-61, Method: Composition-based stats.
Identities = 127/379 (33%), Positives = 204/379 (53%), Gaps = 29/379 (7%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAA----------RSLYGTM--SDIRVEINPE 56
L + + ++ ++ + V + +++ K ++ + + VE++ E
Sbjct: 9 LKNMIEEISQRHNLPKSAVNEALREALLKGYERYRRAQSMEKNQFHDDYFENFDVELDTE 68
Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPP--MDFGRVAVQSA 114
+ ++VE V N ISL+ + +G V + P +FGR+A
Sbjct: 69 EEGFRILSTKKIVESVTNSDHHISLEEVQAVVSEAQLGDEVVLDVTPDQKEFGRMAAIQT 128
Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS------DGVIRRD 168
KQV++QK+R+ +R EF+D G +++ V R E VI+ + ++ + + +
Sbjct: 129 KQVLLQKLRDQQRKLIQEEFQDVEGTVLNARVLRFERQAVIMAVQSTFGQPEVEAELPKR 188
Query: 169 ETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227
E + +N R K + VR RGPQ+++SR +V LF EVPEI +V++
Sbjct: 189 EQLPNDNYRANATFKVLLKKVREGSHRGPQLIVSRAAAGLVVYLFANEVPEIEEEVVRIV 248
Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280
AVSR+ GSR K+AV + + +DPVGAC+G RGSR+QAVV ELR EKID++ WS
Sbjct: 249 AVSREANPPSRYVGSRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGEKIDVIRWS 308
Query: 281 PDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
PD AT++ NAL PA V +V+L + D + ++V ++QLSLAIG+ GQNVRLA++LTGW I
Sbjct: 309 PDPATYIANALSPARVDEVILTNPDERQALILVAEDQLSLAIGKEGQNVRLAARLTGWKI 368
Query: 340 DIITEEEDSINRQKDFNER 358
DI ++K +
Sbjct: 369 DIKDRALYKAEKEKQQPQD 387
>gi|255325207|ref|ZP_05366313.1| transcription termination factor NusA [Corynebacterium
tuberculostearicum SK141]
gi|255297772|gb|EET77083.1| transcription termination factor NusA [Corynebacterium
tuberculostearicum SK141]
Length = 338
Score = 239 bits (610), Expect = 9e-61, Method: Composition-based stats.
Identities = 123/357 (34%), Positives = 196/357 (54%), Gaps = 41/357 (11%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAAR---------SLYGTMSDIRVEINPETGDI 60
LQ + E+++ +L +A ++ + + G S RV+I+ TG +
Sbjct: 5 LQALRTIESERNVPVKDLLEAIAGALLYSYLDYRESNAGGKVEGAKS--RVDIDATTGAV 62
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
S+ +V E + T +++ + P +FGRV Q+ ++ I++
Sbjct: 63 SV-----IVSERDPETGEVTTE----------------YDDTPENFGRVGAQAVREAILR 101
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETIS 172
K+REAE +R Y + + G ++SG V+R N V+V LG+ DG++ E I
Sbjct: 102 KLREAEAERTYDSYSELTGRVVSGIVQRDARANARGIVVVQLGSELESQDGILLPAEQIP 161
Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRD 232
E L GDR+K+Y+ V R Q+ LSRTHP+ + LF +EVPE+ +G V++ A++R+
Sbjct: 162 GEKLEHGDRIKAYVVGVNRNGAQVQINLSRTHPELVRGLFELEVPEVADGSVEMIAIARE 221
Query: 233 PGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALR 292
G R+K+AV ++ GAC+G RG RV ++ +L EKIDI+ +S D +V NAL
Sbjct: 222 AGHRSKVAVVGHAKGLNAKGACIGPRGQRVNNIMRQLGGEKIDIIDFSEDPTVYVGNALA 281
Query: 293 PAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
P+ V KV +D + V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ + +
Sbjct: 282 PSKVVKVTVVDNEAQIARVVVPDYQLSLAIGKEGQNARLAARLTGWKIDIHSDADAN 338
>gi|19553191|ref|NP_601193.1| transcription elongation factor NusA [Corynebacterium glutamicum
ATCC 13032]
gi|62390827|ref|YP_226229.1| transcription elongation factor NusA [Corynebacterium glutamicum
ATCC 13032]
gi|145295891|ref|YP_001138712.1| transcription elongation factor NusA [Corynebacterium glutamicum R]
gi|21324757|dbj|BAB99380.1| Transcription terminator [Corynebacterium glutamicum ATCC 13032]
gi|41326165|emb|CAF20328.1| PUTATIVE TRANSCRIPTIONAL TERMINATION/ANTITERMINATION FACTOR
[Corynebacterium glutamicum ATCC 13032]
gi|140845811|dbj|BAF54810.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 332
Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats.
Identities = 126/349 (36%), Positives = 194/349 (55%), Gaps = 35/349 (10%)
Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI----RVEINPETGDISLFRLL 66
Q A+ EK I +L +A ++ + T++ RV+I+ TG +++
Sbjct: 6 QALKAIESEKGIPVPDLLRTIASALLHSYMDNRETVASANLKPRVDIDSTTGTVNV---- 61
Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
+V E D + ++ D P +FGRV+ ++ + I++ +REAE
Sbjct: 62 -IVSE---------------FDENGELASEYDD--TPSNFGRVSARAVRDAIVKSLREAE 103
Query: 127 RDRQYLEFKDKVGEIISGTVKRV----EYGNVIVDLG----NSDGVIRRDETISRENLRP 178
R + + D G ++SG V+ E G +IV LG N DGV+ E I E L+
Sbjct: 104 ASRAFDAYADYEGTVVSGIVQADARAAERGIIIVQLGTEADNQDGVLLPAEQIPGEKLKH 163
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
GDRVK ++ V + Q+ LSRTHP+ + +LF +E+PE+ +G V++ A+SR+ G R+K
Sbjct: 164 GDRVKCFVVGVGKGNTDIQINLSRTHPELVRRLFELEIPEVADGSVEIVAISREAGHRSK 223
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV + +++ GAC+G RG RV ++ EL EKIDI+ +S D ATFV NAL P+ V
Sbjct: 224 VAVQAKVKNLNAKGACIGPRGQRVSNIMRELGGEKIDIIDYSEDPATFVGNALAPSKVVN 283
Query: 299 VVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346
V + D + V VP QLSLAIG+ GQN RLA++LTGW IDI ++ +
Sbjct: 284 VEVTDLEAQTARVTVPDYQLSLAIGKEGQNARLAARLTGWKIDIHSDID 332
>gi|311739681|ref|ZP_07713516.1| transcription termination factor NusA [Corynebacterium
pseudogenitalium ATCC 33035]
gi|311305497|gb|EFQ81565.1| transcription termination factor NusA [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 338
Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats.
Identities = 123/357 (34%), Positives = 196/357 (54%), Gaps = 41/357 (11%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAAR---------SLYGTMSDIRVEINPETGDI 60
LQ + E+S+ +L +A ++ + + G S RV+I+ TG +
Sbjct: 5 LQALRTIESERSVPVKDLLEAIAGALLYSYLDYRESNAGGKVEGAKS--RVDIDATTGAV 62
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
S+ +V E + T +++ + P +FGRV Q+ ++ I++
Sbjct: 63 SV-----IVSERDPETGEVTTE----------------YDDTPENFGRVGAQAVREAILR 101
Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETIS 172
K+REAE +R + + + G ++SG V+R N V+V LG+ DG++ E I
Sbjct: 102 KLREAEAERTFDSYSELTGRVVSGIVQRDARANARGIVVVQLGSELESQDGILLPAEQIP 161
Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRD 232
E L GDR+K+Y+ V R Q+ LSRTHP+ + LF +EVPE+ +G V++ A++R+
Sbjct: 162 GEKLEHGDRIKAYVVGVNRNGAQVQINLSRTHPELVRGLFELEVPEVADGSVEMIAIARE 221
Query: 233 PGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALR 292
G R+K+AV ++ GAC+G RG RV ++ +L EKIDI+ +S D +V NAL
Sbjct: 222 AGHRSKVAVVGHAKGLNAKGACIGPRGQRVNNIMRQLGGEKIDIIDFSEDPTVYVGNALA 281
Query: 293 PAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
P+ V KV +D + V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ + +
Sbjct: 282 PSKVVKVTVVDNEAQIARVVVPDYQLSLAIGKEGQNARLAARLTGWKIDIHSDADAN 338
>gi|34558085|ref|NP_907900.1| transcription elongation factor NusA [Wolinella succinogenes DSM
1740]
gi|34483803|emb|CAE10800.1| TRANSCRIPTION ELONGATION FACTOR [Wolinella succinogenes]
Length = 375
Score = 237 bits (606), Expect = 2e-60, Method: Composition-based stats.
Identities = 106/343 (30%), Positives = 187/343 (54%), Gaps = 9/343 (2%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+L I + +AYEK + D V + ++I A+ VEI+ + + L++ + V
Sbjct: 4 ILDIIELIAYEKGLKIDSVAGAVKEAIIITAKKSLDEHIAYDVEIDKKNKTLKLYQKILV 63
Query: 69 VEEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+ + IS+ A++ D +++G + L + R AV + + + ++
Sbjct: 64 CPPGDERLSSDPDNHISITEAKEMDEEVEVGDELRYELSLENMSRSAVNTLYKELEFHIQ 123
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRV 182
+ + ++K +VG+I+SG+V RV+ N V++ + + I E+ + G+ V
Sbjct: 124 RLIETQLFEKYKSQVGKIVSGSVVRVDDEGNTFVEIDEIRAFLPKKNRIKGESFKVGNVV 183
Query: 183 KSYIYDVRREQRG-PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+ + V +++ Q+ LSRT P+ + +L +EVPEI +G V ++ +R PG RAK+A+
Sbjct: 184 GAILKHVSIDRKNGIQIELSRTTPKLLEELLRLEVPEIKDGDVTIEKCARIPGERAKVAI 243
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
SS ID VGA VG++G R+ AV EL++E ID + +SP FV +L PA+++ V +
Sbjct: 244 SSSSPKIDAVGATVGVKGVRINAVGKELKNENIDCIEYSPIPEMFVARSLSPALISSVKI 303
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344
D + V +P EQ AIG+ G N+RLAS LTG+ I++I +
Sbjct: 304 D--GTKAIVTLPSEQKPKAIGKNGINIRLASMLTGYEIELIEQ 344
>gi|306836351|ref|ZP_07469329.1| transcription termination factor NusA [Corynebacterium accolens
ATCC 49726]
gi|304567711|gb|EFM43298.1| transcription termination factor NusA [Corynebacterium accolens
ATCC 49726]
Length = 338
Score = 237 bits (606), Expect = 2e-60, Method: Composition-based stats.
Identities = 119/355 (33%), Positives = 198/355 (55%), Gaps = 37/355 (10%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-------IRVEINPETGDISL 62
L+ + E+ + + +L +A ++ + + ++ RV+I+ TG +S+
Sbjct: 5 LEALRTIESERQVPVNDLLEAIASALLYSYLDYRESTAEGKAEGTKFRVDIDTTTGAVSV 64
Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+V E + T +++ + P +FGRV ++ ++ I++K+
Sbjct: 65 -----IVTERDPETGEVTSE----------------YDDTPDNFGRVGARAVREAILRKL 103
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRE 174
REAE +R + + + G ++SG V+R + N V+V LG+ DG++ E I E
Sbjct: 104 REAEAERTFDSYSELSGRVVSGIVQRDAHANARGIVVVQLGSELESQDGILLPAEQIPGE 163
Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234
L+ GDR+K+Y+ V R Q+ LSRTHP+ + LF +EVPE+ +G V++ A++R+ G
Sbjct: 164 KLQHGDRIKAYVVGVNRNGANVQINLSRTHPELVRGLFELEVPEVADGSVEMIAIAREAG 223
Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294
R+K+AV ++ GAC+G RG RV ++ +L EKIDI+ +S D +V NAL P+
Sbjct: 224 HRSKVAVIGHAKGLNAKGACIGPRGQRVNNIMRQLGGEKIDIIDYSEDPTVYVGNALAPS 283
Query: 295 IVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
V KV + D + VIVP QLSLAIG+ GQN RLA++LTGW IDI ++ + +
Sbjct: 284 KVIKVTVLDSEEQVARVIVPDYQLSLAIGKEGQNARLAARLTGWKIDIHSDADAN 338
>gi|193214185|ref|YP_001995384.1| transcription elongation factor NusA [Chloroherpeton thalassium
ATCC 35110]
gi|193087662|gb|ACF12937.1| NusA antitermination factor [Chloroherpeton thalassium ATCC 35110]
Length = 531
Score = 237 bits (606), Expect = 2e-60, Method: Composition-based stats.
Identities = 124/398 (31%), Positives = 211/398 (53%), Gaps = 29/398 (7%)
Query: 26 VVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVAR 85
++ ++ D+IQK R Y + RV INP+ GD ++ L +VVEE++ + +ISL+ A+
Sbjct: 44 DIVDLLRDTIQKQLRKDYDPEVEARVIINPDRGDFEVYILKQVVEEIDLPSIEISLEEAQ 103
Query: 86 DRDPSIDIGGVVSD-PLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIIS 143
+ D S+++G P+ D+ R ++Q KQ + +K+R+AER Y E +KVGE++S
Sbjct: 104 EIDDSLELGDFYEVGPIHLEDYLTRKSIQIIKQAVQKKMRDAERQAIYEECLEKVGEVVS 163
Query: 144 GTVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG--- 195
V +V I + ++ E + ++N R R++ Y+ + RE+
Sbjct: 164 AEVHQVRQKEAIFTYNTTKDHKVELLLPNTEKMPKDNPRKTPRMRLYVKRIEREKIRVKL 223
Query: 196 --------------PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+V++SRT +F+ KLF EVPEIY G++ VK ++R PG RAK++V
Sbjct: 224 EDGTEVEREREDGPMKVIVSRTDDRFLHKLFESEVPEIYEGLIVVKGIARVPGERAKVSV 283
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-- 299
S+ S IDPVGACVG RG R+Q +V EL +E ID++ +S + ++ AL+PA + +
Sbjct: 284 ESTSSRIDPVGACVGHRGKRIQNIVRELNNENIDVICFSDEPQIYIARALQPAKIDPMTV 343
Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
+D + V++ +Q+ AIGR G N+ LA +LTG+ I+I + D +
Sbjct: 344 HVDPKTRKSRVMLKPDQIKYAIGRNGNNIHLAEKLTGYEIEIYRDISDKALEDP---DDI 400
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIAS 397
+ + + L+ GF +++ + I
Sbjct: 401 DIISFREEFGDDMIYQLLDNGFDTAKKILEAGVDAIEK 438
>gi|68536221|ref|YP_250926.1| transcription elongation factor NusA [Corynebacterium jeikeium
K411]
gi|68263820|emb|CAI37308.1| N utilization substance protein A [Corynebacterium jeikeium K411]
Length = 337
Score = 237 bits (606), Expect = 2e-60, Method: Composition-based stats.
Identities = 120/355 (33%), Positives = 189/355 (53%), Gaps = 32/355 (9%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ AV ++S+D D +L + +++A R+ + V+I+P +G++++++ V
Sbjct: 5 MAALRAVEKQESVDFDDLLEGVKRGLREAYRAKSHFTGPVDVDIDPISGEVTIYQ----V 60
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
E+ E + + + I P +FGR + ++ I ++ A
Sbjct: 61 EKDE------------EGNVTGRIDDT------PKNFGRDGALAVREAIRFRINSARVQN 102
Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETISRENLRPGDR 181
+Y E+ + ++SG V N IV LG DG I E I E L G R
Sbjct: 103 RYDEYAELRYRVVSGVVSADARANERGVTIVHLGTEANGQDGQILPAEHIPGEELEHGMR 162
Query: 182 VKSYIYD-VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
VK+++ D + R Q+ LSRTHP+ + LF +EVPE+ +G V++ +V+R+ G R K+A
Sbjct: 163 VKAFVTDVINNANRMVQINLSRTHPELVKGLFSLEVPEVADGSVEIVSVAREAGHRTKIA 222
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
V S+ ++ GAC+G RG RV ++ EL EKIDI+ +S D ATFV NAL P+ V V
Sbjct: 223 VRSTVKGLNAKGACIGPRGQRVSNIMQELGGEKIDIIDYSDDPATFVGNALSPSKVVSVK 282
Query: 301 L-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354
+ D ++ +VP QLSLAIGR GQN RLA++LTGW IDI +E + +
Sbjct: 283 VTDPEMQIARAVVPDYQLSLAIGREGQNARLAARLTGWKIDIRSETDAAAEDTPS 337
>gi|259507495|ref|ZP_05750395.1| N utilization substance protein A [Corynebacterium efficiens
YS-314]
gi|259164880|gb|EEW49434.1| N utilization substance protein A [Corynebacterium efficiens
YS-314]
Length = 332
Score = 237 bits (605), Expect = 3e-60, Method: Composition-based stats.
Identities = 125/347 (36%), Positives = 199/347 (57%), Gaps = 35/347 (10%)
Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAA----RSLYGTMSDIRVEINPETGDISLFRLL 66
Q A+ EK I + ++ +A+++ + S S RV+I+ TG +++
Sbjct: 6 QALRAIEKEKGIRVEDMIRTIANALLHSYLDNRESDVPESSKARVDIDVSTGAVAV---- 61
Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
+V E ++ S P +FGRV+ ++ + I++++REAE
Sbjct: 62 -IVTEFDDEGTISS-----------------EYDDTPSNFGRVSARAVRDAIVRRLREAE 103
Query: 127 RDRQYLEFKDKVGEIISGTVKRV----EYGNVIVDLG----NSDGVIRRDETISRENLRP 178
+R + + + G ++SG V+ E G V+V LG + DG++ E I E L+
Sbjct: 104 AERAFDAYAEYEGTVMSGLVQADSRAAERGIVVVQLGTETDSQDGILLPAEQIPGEKLKH 163
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
GDRVKSY+ V + G Q+ LSRTHP+ + +LF +E+PE+ +G V++ A+SR+ G R+K
Sbjct: 164 GDRVKSYVVGVGKGPVGIQINLSRTHPELVRRLFELEIPEVADGSVEIVAISREAGHRSK 223
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++ +++ GAC+G RG RV ++ EL EKIDI+ +S D ATFV NAL P+ V
Sbjct: 224 VAVRATVKNLNAKGACIGPRGQRVSNIMRELGGEKIDIIDYSDDPATFVGNALAPSKVVS 283
Query: 299 VVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344
V + D + +V+VP QLSLAIG+ GQN RLA++LTGW IDI ++
Sbjct: 284 VEIVDAEQQVAKVVVPDYQLSLAIGKEGQNARLAARLTGWKIDIHSD 330
>gi|223040803|ref|ZP_03611069.1| transcription termination factor NusA [Campylobacter rectus RM3267]
gi|222877902|gb|EEF13017.1| transcription termination factor NusA [Campylobacter rectus RM3267]
Length = 366
Score = 236 bits (603), Expect = 5e-60, Method: Composition-based stats.
Identities = 106/340 (31%), Positives = 189/340 (55%), Gaps = 8/340 (2%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ I +++A EK ++ + V + +I A+ +YG + I+ T + L++ + V
Sbjct: 4 IADIIESIANEKGLEIEDVKERVIRAIINTAKKIYGENYEYDAVIDSSTKSLHLYQKITV 63
Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
VE+ E+ + + A+ D ++IG ++ L + GR A Q+ + + ++
Sbjct: 64 VEDGDERLAEDNEHFLGVSEAKKVDAGVEIGDELTYELSTDNLGRTAAQTLHKELEYHIQ 123
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRV 182
++ + ++++ +G+++ G+V RV+ N +++ V+ R I E +PGD V
Sbjct: 124 RLMEEKIFQKYQEMIGQMVFGSVTRVDSEENTFIEIDELRAVMSRKNRIKGEKFKPGDVV 183
Query: 183 KSYIYDVRREQRG-PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
K+ I V ++ +V LSRT P+F+ L EVPEI +G+V + A +R PG RAK+A+
Sbjct: 184 KAVIKSVYIDKSMGIKVELSRTSPKFLEALLKAEVPEIKDGLVLIAASARIPGERAKVAL 243
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
++ ++DPVGA VG +G R+ AV EL E ID + +S + A + A+ PAI++ V +
Sbjct: 244 VATSPNVDPVGATVGTKGVRINAVTNELSGENIDAIEYSAEPAILITRAMSPAIISSVKI 303
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
D + V + EQ S AIG+ G N+RLAS LTG+ I++
Sbjct: 304 T-DENKAVVSLASEQKSKAIGKSGINIRLASMLTGYEIEL 342
>gi|224372321|ref|YP_002606693.1| transcription elongation factor NusA [Nautilia profundicola AmH]
gi|223589774|gb|ACM93510.1| transcription termination factor NusA [Nautilia profundicola AmH]
Length = 357
Score = 236 bits (603), Expect = 6e-60, Method: Composition-based stats.
Identities = 114/350 (32%), Positives = 181/350 (51%), Gaps = 8/350 (2%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+L + VA EK +D D V SI K A+ + G DI VE++ E G++ ++++ EV
Sbjct: 4 VLDLLSLVANEKGLDFDEVKEAFKRSIIKTAKKVLG---DIDVEVDIENGELKIYQIFEV 60
Query: 69 VEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+ +E L AR+ DP+ IG + L GR + ++ +++
Sbjct: 61 RNDDVALEEPEKYFYLDEAREFDPNAQIGDKLKVELDLGKLGRSGAMALQREFEREITRL 120
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
+ Y + K+ I+SG V +V+ N V+L GV+ I E GD +K+
Sbjct: 121 LENEIYRKLISKLNTIVSGEVVKVDSEENTWVELEGVKGVLPMRNRIKGEKFEVGDVMKA 180
Query: 185 YIYDVR-REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+ V RG + LSRT+P+F+ KL VPE+ +GI+++ +R PG R+K+AV S
Sbjct: 181 LLKYVHFDTNRGITIELSRTNPKFLEKLIESAVPEVRDGIIKIHTSARIPGVRSKVAVSS 240
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
+ ++P+G +G G R+ +V EL E ID++ +SP F+ AL PAIV V +DE
Sbjct: 241 LNPKVEPIGTIIGKNGVRINSVSNELNGENIDVIEYSPKPEIFIARALSPAIVKNVQVDE 300
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353
D V V +Q + AIG+ G N+ LA LT + I++ EE S + K
Sbjct: 301 DKALAVVEVDPDQKAKAIGKNGINITLAGMLTKYKIELKDAEEKSKDTSK 350
>gi|254373566|ref|ZP_04989053.1| hypothetical protein FTCG_01522 [Francisella tularensis subsp.
novicida GA99-3549]
gi|151571291|gb|EDN36945.1| hypothetical protein FTCG_01522 [Francisella novicida GA99-3549]
Length = 344
Score = 236 bits (603), Expect = 6e-60, Method: Composition-based stats.
Identities = 105/314 (33%), Positives = 176/314 (56%), Gaps = 32/314 (10%)
Query: 203 THPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRV 262
+ + LF +EVPE+ ++ + V R+PG R+K+ V S+D IDP GACVG+RGSR+
Sbjct: 60 SSNTMLKALFKLEVPEVEEELINIVNVVREPGFRSKVTVKSNDQRIDPCGACVGVRGSRI 119
Query: 263 QAVVTELRDEKIDIVVWSPDSATFVINALRP---AIVTKVVLDEDVGRIEVIVPKEQLSL 319
++++EL EK+D+++W+ D + IN+L P A + +V +DE+ ++++V +E LS
Sbjct: 120 HSIMSELNGEKVDVILWNEDMVQYAINSLSPVDAADILEVNVDEETNSMDIVVKQESLSK 179
Query: 320 AIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAE 379
AIG+ G NVRLAS L GW I+++++ E + + F++A+++D A +L+ E
Sbjct: 180 AIGKNGVNVRLASSLIGWKINVLSDAEQEEKQ----MSIVEKFVEALDIDHDFALVLIEE 235
Query: 380 GFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCS 439
G +E+LA + +E+ IEGFDEE E+Q RA+ + + +++L
Sbjct: 236 GIETLEDLAYLDRAELLEIEGFDEEIVDELQERAKAVILSQA------LGGKKPAQDLLD 289
Query: 440 IPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVE 499
+ G+ + L +N I TMEDLA SVD+LL + ++Q
Sbjct: 290 MQGMSLDLAEQLAQNNIVTMEDLAELSVDELLDI-----------------VDMDEEQAT 332
Query: 500 SMIIHARYKMGWIE 513
++I+ AR W E
Sbjct: 333 NLIMQARAP--WFE 344
>gi|12044993|ref|NP_072803.1| transcription elongation factor NusA [Mycoplasma genitalium G37]
gi|255660291|ref|ZP_05405700.1| transcription elongation factor NusA [Mycoplasma genitalium G37]
gi|1352607|sp|P47387|NUSA_MYCGE RecName: Full=Transcription elongation protein nusA
gi|3844734|gb|AAC71359.1| transcription termination factor NusA [Mycoplasma genitalium G37]
gi|166078938|gb|ABY79556.1| transcription termination factor NusA [synthetic Mycoplasma
genitalium JCVI-1.0]
Length = 531
Score = 236 bits (602), Expect = 7e-60, Method: Composition-based stats.
Identities = 112/439 (25%), Positives = 206/439 (46%), Gaps = 13/439 (2%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
LL I VA K++ + V+ + ++++A + ++ V IN + G I++ +L V
Sbjct: 33 LLAIIKNVAKTKNLSIEEVVFCLKTALEQAYKKHLNF-VNVEVNINFDKGIINVEQLFNV 91
Query: 69 V-EEVENYT--CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
V +E E+Y +I L+ A + S+ +G V+ P+P + + + QK+ E
Sbjct: 92 VSDENEDYDDFLEIPLQAANKINSSLQLGDVLRKPIPLKNISSDLINKMIAIFNQKISET 151
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYG------NVIVDLGNSDGVIRRDETISRENLRPG 179
EF +VGE+I V+ ++ I++L + G I + E E L G
Sbjct: 152 NFKAVMSEFSSEVGEVIEAKVEDIDTNKEGGLKGYIINLETTKGYISKRELSKGERLEIG 211
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
+ I +++R+ + LSR+ + + L PEI NG + +K + R PG ++K+
Sbjct: 212 KKYLFVIKEIQRQASLWPITLSRSDTRLLQFLLTSNTPEIENGTIVIKKIERSPGVKSKI 271
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
AV S+D ++DPV A +G +G +++ + E E IDIV W+ D F+INA+ PA V
Sbjct: 272 AVISNDPAVDPVAAILGPKGEKIRGISEEFNGEIIDIVFWNEDKLKFLINAILPAEVIGY 331
Query: 300 VL---DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356
+ DE IEV+VP Q++ G +G N+RL S LTGW + E+D+ F
Sbjct: 332 NILQDDERDTSIEVVVPANQIANVFGFKGVNIRLISNLTGWNSVDVYSEKDASEANIKFT 391
Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416
+ + + ++ + V + + + I ++ V+ + + E
Sbjct: 392 RLSFEPEGLFGIKKRREKIISNDATDKVFYTSKDNVIDDEIIVDLAKDLMVDNKQKQPEQ 451
Query: 417 LEGIDITLQKKIRELGVSE 435
+ + + +++ E
Sbjct: 452 VAKQVVEKSQLEKQVTPKE 470
>gi|172040528|ref|YP_001800242.1| transcription elongation factor NusA [Corynebacterium urealyticum
DSM 7109]
gi|171851832|emb|CAQ04808.1| N utilization substance protein A [Corynebacterium urealyticum DSM
7109]
Length = 332
Score = 236 bits (602), Expect = 8e-60, Method: Composition-based stats.
Identities = 115/348 (33%), Positives = 193/348 (55%), Gaps = 32/348 (9%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
L A+ ++ + D ++ +A+ +++A R+ ++ V+I+P +G ++++++
Sbjct: 5 LATLRAIERQEGVPVDELIHAIANGLKEAYRNQSAFAGEVDVQIDPTSGAVAIYQV---- 60
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
+RD ++ G + + P +F R + ++ I +++ A +
Sbjct: 61 ----------------ERDEEGNVTGRLDE--TPENFDRTTALAMREAIRRRIGGARVQQ 102
Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETISRENLRPGDR 181
+Y E+ I+SG V R N +V +G DG I E I E L+ G R
Sbjct: 103 RYDEYSSIRHTIVSGVVTRDARANERGITVVHIGTEADGIDGQILPAEHIPGEVLKHGTR 162
Query: 182 VKSYIYDVRRE-QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
VK+++ DV + R Q+ LSRTHP+ + LF +EVPE+ +G V++ +++R+ G R K+A
Sbjct: 163 VKAFVTDVIKHADRNVQISLSRTHPELVRGLFELEVPEVADGSVEIMSIAREAGHRTKIA 222
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI-VTKV 299
V ++ ++ GAC+G RG RV A++ EL EKIDI+ +S D A +V NAL P+ V+
Sbjct: 223 VRATIKGLNAKGACIGPRGQRVSAIMAELGGEKIDIIDYSDDPAQYVGNALSPSKYVSST 282
Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347
V+D + V+VP QLSLAIGR GQNVRLA++LT W IDI ++ E
Sbjct: 283 VIDAEQQIARVVVPDYQLSLAIGREGQNVRLAARLTCWKIDIKSDAEQ 330
>gi|237752704|ref|ZP_04583184.1| transcription elongation factor NusA [Helicobacter winghamensis
ATCC BAA-430]
gi|229376193|gb|EEO26284.1| transcription elongation factor NusA [Helicobacter winghamensis
ATCC BAA-430]
Length = 371
Score = 236 bits (601), Expect = 9e-60, Method: Composition-based stats.
Identities = 108/356 (30%), Positives = 187/356 (52%), Gaps = 6/356 (1%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+L I + +AYEK + + V + D++ K A+ + VEI+ + + L++++ V
Sbjct: 4 ILDIIEGIAYEKGLPIESVTDAVKDAVIKVAKESLDSTIHYDVEIDKKNKTLHLYQVISV 63
Query: 69 VEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
E+ + + I L A+ D I IG + L D R AV + + + K++
Sbjct: 64 CEDSDALDGKNMIPLSEAKKHDSEIKIGDELRYELSLEDMSRNAVNALFRELEFKIQRLI 123
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
+ + ++K ++G+I+SG V R + GN +++ ++ + I E G V +
Sbjct: 124 ETQLFDKYKSQIGKIVSGNVVRADSLGNTYIEIDEIRAILPKKNRIKGEEFGVGQIVGAV 183
Query: 186 IYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ V Q G + LSRT P+ + +L +EVPEI +G V++ SR PG RAK+A+ +
Sbjct: 184 LKHVGIDRQNGIMIELSRTTPKMLEELLKLEVPEIKDGDVEIVNSSRIPGERAKVALKTD 243
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
+ IDPVGA VG++G R+ AV EL++E ID + +S ++ AL PA+V V + +
Sbjct: 244 SAKIDPVGATVGVKGVRINAVSKELKNESIDCIEYSVQPEIYIARALSPALVISVAV--E 301
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+ V + EQ AIG+ G N+RLAS LTG+ I++ + + + + TQ
Sbjct: 302 DKKAIVSITSEQKPKAIGKNGINIRLASMLTGYEIELKEIDSGTQQVSSNSTQETQ 357
>gi|118475774|ref|YP_892520.1| transcription elongation factor NusA [Campylobacter fetus subsp.
fetus 82-40]
gi|118415000|gb|ABK83420.1| transcription termination factor NusA [Campylobacter fetus subsp.
fetus 82-40]
Length = 365
Score = 236 bits (601), Expect = 9e-60, Method: Composition-based stats.
Identities = 114/347 (32%), Positives = 189/347 (54%), Gaps = 7/347 (2%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ I +++A EK ++ + V + + AA+ LYG + ++P T I L++ + V
Sbjct: 4 ISDIIESIANEKGLNFEDVKERIIRAFVNAAKRLYGYECEYEASLDPNTKAIHLYQKILV 63
Query: 69 VEEVE---NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VE+ + + ISLK A + D +++IG ++ L + GR + I ++
Sbjct: 64 VEDSDERLDEEHFISLKKAHELDATLEIGDSLNYELNIDELGRTGAGVLSREIEYHIQRL 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
++ Y ++ K+ ++ GTV RV+ N V++ V+ I E + G+ VK+
Sbjct: 124 IEEKIYEKYNSKINTLVFGTVTRVDAEENTFVEIDEIRAVMSMKNRIKNEKFKVGNVVKA 183
Query: 185 YIYDVRREQRG-PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
I VR +++ +V LSRT P+F+ L EVPEI +G V ++ +R PG +AK+A+FS
Sbjct: 184 VIKSVRLDKKDGIKVELSRTSPKFLEALLKAEVPEIKDGGVIIQNSARIPGKKAKIALFS 243
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
+ +ID VGA VG++G R+ AV +EL E ID + +S + A FV AL PAIV+ V +D+
Sbjct: 244 TTPNIDAVGATVGIKGVRINAVSSELNGENIDAIEYSSEPAIFVARALAPAIVSSVKIDD 303
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350
+ V + EQ S AIG G N+RLAS L+G+ I + +
Sbjct: 304 --KKAIVSLVPEQKSKAIGVSGINIRLASMLSGFEIILHEIGAPTQE 348
>gi|227503407|ref|ZP_03933456.1| transcription elongation factor NusA [Corynebacterium accolens ATCC
49725]
gi|227075910|gb|EEI13873.1| transcription elongation factor NusA [Corynebacterium accolens ATCC
49725]
Length = 338
Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats.
Identities = 119/355 (33%), Positives = 198/355 (55%), Gaps = 37/355 (10%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-------IRVEINPETGDISL 62
L+ + E+ + + +L +A ++ + + ++ RV+I+ TG +S+
Sbjct: 5 LEALRTIESERQVPVNDLLEAIASALLYSYLDYRESTAEGKAEGTKSRVDIDTTTGAVSV 64
Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
+V E + T +++ + P +FGRV ++ ++ I++K+
Sbjct: 65 -----IVTERDPETGEVTSE----------------YDDTPDNFGRVGARAVREAILRKL 103
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRE 174
REAE +R + + + G ++SG V+R + N V+V LG+ DG++ E I E
Sbjct: 104 REAEAERTFDSYSELSGRVVSGIVQRDAHANARGIVVVQLGSELESQDGILLPAEQIPGE 163
Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234
L+ GDR+K+Y+ V R Q+ LSRTHP+ + LF +EVPE+ +G V++ A++R+ G
Sbjct: 164 KLQHGDRIKAYVVGVNRNGANVQINLSRTHPELVRGLFELEVPEVADGSVEMIAIAREAG 223
Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294
R+K+AV ++ GAC+G RG RV ++ +L EKIDI+ +S D +V NAL P+
Sbjct: 224 HRSKVAVIGHAKGLNAKGACIGPRGQRVNNIMRQLGGEKIDIIDYSEDPTVYVGNALAPS 283
Query: 295 IVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
V KV + D + VIVP QLSLAIG+ GQN RLA++LTGW IDI ++ + +
Sbjct: 284 KVIKVTVLDSEEQVARVIVPDYQLSLAIGKEGQNARLAARLTGWKIDIHSDADAN 338
>gi|157736507|ref|YP_001489190.1| transcription elongation factor NusA [Arcobacter butzleri RM4018]
gi|315635666|ref|ZP_07890929.1| transcription termination factor NusA [Arcobacter butzleri JV22]
gi|157698361|gb|ABV66521.1| transcription termination factor NusA [Arcobacter butzleri RM4018]
gi|315479963|gb|EFU70633.1| transcription termination factor NusA [Arcobacter butzleri JV22]
Length = 391
Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats.
Identities = 111/357 (31%), Positives = 194/357 (54%), Gaps = 22/357 (6%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
++ I D++AYEK + D V + + +++ K A+ + T I+ + LF+ +EV
Sbjct: 4 IIDILDSIAYEKGLKIDDVENSLKEALIKTAQRMVDTTLIFDANIDRANKKLELFQKIEV 63
Query: 69 VEEVEN---------------YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQS 113
V + ++ ISL+ A++ + +DIG +S L + GR A
Sbjct: 64 VSKDDDRLKEGSLTKEGTPINPENYISLEEAKEINSDLDIGDFMSYELEFENMGRNAATI 123
Query: 114 AKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETIS 172
+++ + ++K+KVG+ +SGTV R++ N +++G G+++R I
Sbjct: 124 LLSNFEFRLQRFVEENIVGKYKEKVGKTVSGTVTRIDKSDNTYIEIGEIKGILQRKSRIK 183
Query: 173 RENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSR 231
E + GD VK+ + V ++ G V +SRT P+F+ L +EVPE+ + + ++A +R
Sbjct: 184 GEFFKVGDVVKAVVKSVNIDKTNGLLVEISRTSPKFLENLLVLEVPELKDKKIAIEASAR 243
Query: 232 DPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINAL 291
PG+R+K+A+ + D+ IDP+GA VG++G R+ +V +L E ID V +S F+ AL
Sbjct: 244 IPGTRSKIALSTIDAQIDPIGAVVGVKGVRIGSVSKQLNGENIDCVEYSEIPEIFISRAL 303
Query: 292 RPAIVTKVVL-----DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343
PAIV V + + + G+ V +P +Q S AIG+ G N+RLAS LT + I++I
Sbjct: 304 SPAIVHSVKIEKNPENGEKGKAVVTIPSDQKSKAIGKAGLNIRLASMLTKYDIELIE 360
>gi|227833356|ref|YP_002835063.1| N utilization substance protein A [Corynebacterium aurimucosum ATCC
700975]
gi|262184342|ref|ZP_06043763.1| transcription elongation factor NusA [Corynebacterium aurimucosum
ATCC 700975]
gi|227454372|gb|ACP33125.1| N utilization substance protein A [Corynebacterium aurimucosum ATCC
700975]
Length = 338
Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats.
Identities = 118/352 (33%), Positives = 193/352 (54%), Gaps = 39/352 (11%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI-------RVEINPETGDISL 62
L+ + E+ + +L +A ++ + ++ RV+I+ ++G +++
Sbjct: 5 LEALRTIQRERGVPVKDLLEAIAGALLYSYLDHRAESAETKAEGTKSRVDIDADSGAVTV 64
Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLP-PMDFGRVAVQSAKQVIIQK 121
+V E + G V+S+ P +FGR+ Q+ + I++K
Sbjct: 65 -----IVTE-----------------SDRETGEVISEYDDTPDNFGRIGAQAVRDAILRK 102
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETISR 173
+RE E +R Y + + G ++SG V+R + N V+V LG + D + E +
Sbjct: 103 LRENEAERTYDSYSELTGTVVSGVVQRDIHANNRGVVVVQLGTEHDSQDAFLLPAEQLPG 162
Query: 174 ENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDP 233
E L GDRVK+Y+ V R Q+ LSRTHP+ + LF +EVPE+ +G V++ A++R+
Sbjct: 163 EKLEHGDRVKAYVVGVNRNGAKVQITLSRTHPELVRGLFELEVPEVADGAVEIIAIAREA 222
Query: 234 GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP 293
G R+K++V ++ GAC+G +GSRV V+ EL EKIDI+ ++ D A +V NAL P
Sbjct: 223 GHRSKISVRGHAKGLNAKGACIGPKGSRVSNVMRELGGEKIDIIDFNEDPAVYVGNALAP 282
Query: 294 AIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344
+ V +V + DE+ +V VP QLSLAIG+ GQN RLA++LTGW IDI ++
Sbjct: 283 SKVVRVEILDEEAQVAKVTVPDYQLSLAIGKEGQNARLAARLTGWKIDIHSD 334
>gi|258615949|ref|ZP_05713719.1| transcription elongation factor NusA [Enterococcus faecium DO]
Length = 222
Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats.
Identities = 82/219 (37%), Positives = 134/219 (61%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L DA+ EK I +++V+ + ++ A + YG ++ VE + + G I ++ + E
Sbjct: 4 EMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQKKGKIHVYAVKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
V EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREAER
Sbjct: 64 VTEEVMDSQLEVSLKDALLINPAYEIGDTIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y+
Sbjct: 124 TIIYNEFSAYEKDIMQGIVERQDKRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVYVS 183
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQV 226
V +GPQV +SR+HP + +LF EVPE+Y+GIV++
Sbjct: 184 RVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGIVEI 222
>gi|23336297|ref|ZP_00121520.1| COG0195: Transcription elongation factor [Bifidobacterium longum
DJO10A]
Length = 310
Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats.
Identities = 109/294 (37%), Positives = 176/294 (59%), Gaps = 17/294 (5%)
Query: 52 EINPETGDISLFRLLEV-VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVA 110
E++ +G+ +++ E+ VE E+ P +G D P DFGR+A
Sbjct: 2 ELDERSGNFTVWAADEIPVEPTEDNPY-----------PVPKLGEEYDD--TPRDFGRLA 48
Query: 111 VQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRV--EYGNVIVDLGNSDGVIRRD 168
+A+QVI Q R AE ++ + F + G++I+G +++ + NV V +G+ + ++ R
Sbjct: 49 AATARQVITQLFRRAEDEKVFGSFSGQKGKLITGIIQQDASDPSNVHVAMGDVEAILPRR 108
Query: 169 ETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228
E + E R G+R++ Y+ +V R +GP++++SR+HP+ + KLF EVPE+ +G V + A
Sbjct: 109 EQVPGERYRHGERIRVYVVNVARGIKGPEIVVSRSHPELVRKLFEREVPELVSGAVSIMA 168
Query: 229 VSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVI 288
++R+ G+R K+AV ++ ++P GA +G G+RV+AV+ L EKIDIV +S D A FV
Sbjct: 169 IAREAGARTKIAVKANTDGVNPKGALIGPGGARVRAVMENLGPEKIDIVDYSDDPAKFVA 228
Query: 289 NALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
AL PA+ T V + E + +QLSLAIG+ GQN RLA++LTGW I I
Sbjct: 229 AALSPAVATGVQVISEKNKTAIAFIHDDQLSLAIGKEGQNARLAAKLTGWKIGI 282
>gi|225021163|ref|ZP_03710355.1| hypothetical protein CORMATOL_01175 [Corynebacterium matruchotii
ATCC 33806]
gi|305681535|ref|ZP_07404342.1| transcription termination factor NusA [Corynebacterium matruchotii
ATCC 14266]
gi|224946070|gb|EEG27279.1| hypothetical protein CORMATOL_01175 [Corynebacterium matruchotii
ATCC 33806]
gi|305659740|gb|EFM49240.1| transcription termination factor NusA [Corynebacterium matruchotii
ATCC 14266]
Length = 332
Score = 234 bits (598), Expect = 2e-59, Method: Composition-based stats.
Identities = 117/347 (33%), Positives = 187/347 (53%), Gaps = 35/347 (10%)
Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGT----MSDIRVEINPETGDISLFRLL 66
Q A+ EK I V+L +A ++ A R + RV+I+ TG +++
Sbjct: 6 QALKAIETEKGISVQVLLETIASALMHAYREYKDAPPAPNTQARVDIDIATGAVAV---- 61
Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
++ E+++ V ++ D P +F R+ + + I++++REAE
Sbjct: 62 -IISELDDEGN-----VVQEHDD------------TPANFERIGTVAVRDAIVKRLREAE 103
Query: 127 RDRQYLEFKDKVGEIISGTV----KRVEYGNVIVDLG----NSDGVIRRDETISRENLRP 178
+ Y + + G ++SG V E G V+V LG DG++ E I E L+
Sbjct: 104 TRQAYDAYSEYEGRVVSGVVQADIHANERGIVVVHLGTEADGQDGILLPAEQIPGEQLKH 163
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
GDRVKS++ V + LSRTHP+ + +LF +E+PE+ +G V++ +++R+ G R+K
Sbjct: 164 GDRVKSFVVGVNHNSHSLSINLSRTHPELVRRLFELEIPEVADGSVEIVSIAREAGHRSK 223
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV + ++ GAC+G RG RV ++ EL EKIDI+ +S + A +V NAL P+ V
Sbjct: 224 VAVRARVKGLNAKGACIGPRGQRVTNIMKELNGEKIDIIDYSDNPAEYVGNALAPSKVVD 283
Query: 299 VV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344
V +D V VP QLSLAIG+ GQN RLA++LTGW IDI ++
Sbjct: 284 VEIIDATAQTARVTVPHYQLSLAIGKEGQNARLAARLTGWKIDIRSD 330
>gi|254479107|ref|ZP_05092459.1| transcription termination factor NusA [Carboxydibrachium pacificum
DSM 12653]
gi|214034956|gb|EEB75678.1| transcription termination factor NusA [Carboxydibrachium pacificum
DSM 12653]
Length = 227
Score = 234 bits (598), Expect = 2e-59, Method: Composition-based stats.
Identities = 113/227 (49%), Positives = 155/227 (68%), Gaps = 1/227 (0%)
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183
EAER+ Y EF K E+++G V R NV+++LG + ++ E I E PGDR+K
Sbjct: 1 EAERNVIYEEFLAKETEVVTGIVTRAAKNNVLINLGRVEAILTPSEQIPGETFSPGDRIK 60
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
YI +V++ +GPQ+++SR+HP + +LF +E PEI GIV++++++R+PGSR K+AVFS
Sbjct: 61 VYIVEVKKTTKGPQIIISRSHPGLVKRLFELESPEIQQGIVEIRSIAREPGSRTKMAVFS 120
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-D 302
D ++DP+GACVG +GSRVQAVV EL+ EKIDIV WS F++NAL PA V + D
Sbjct: 121 RDPNVDPIGACVGYKGSRVQAVVNELKGEKIDIVKWSSKPQEFIMNALSPAKAISVEIVD 180
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
E VIVP QLSLAIG+ GQN RLA++LTGW IDI +E
Sbjct: 181 EKEKVARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESMVKS 227
>gi|257459336|ref|ZP_05624449.1| transcription termination factor NusA [Campylobacter gracilis
RM3268]
gi|257443265|gb|EEV18395.1| transcription termination factor NusA [Campylobacter gracilis
RM3268]
Length = 375
Score = 234 bits (597), Expect = 3e-59, Method: Composition-based stats.
Identities = 102/365 (27%), Positives = 179/365 (49%), Gaps = 14/365 (3%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ I +++A EK ++ V + + + A+ L+G E++P+T + L++ + V
Sbjct: 4 ITDIIESIANEKGLEPADVKERVKTAFIQTAKRLFGEEYLYDSEVDPQTKRVKLYQKVHV 63
Query: 69 VEEVEN---YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
V + + I+L A+ + +IG +S + + GR A + + ++
Sbjct: 64 VADDDERLGDHNFIALSEAKKIGENAEIGDELSYEINIENLGRTASGVLARELNFHIQRL 123
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNV-IVDLGNSDGVIRRDETISRENLRPGDRVKS 184
++ + +K KVG + GTV ++++ V++ ++ + I EN + GD +++
Sbjct: 124 LEEKIFENYKSKVGTLTHGTVTKIDHDGTTYVEIEDTKAFMPLKNRIKGENFKVGDVLQA 183
Query: 185 YIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
I +V ++ G ++ LSRT P+F+ L EVPEI +G V ++A +R PG RAK+A+
Sbjct: 184 VIKNVAIDKSHGIRLELSRTSPKFLEALLAAEVPEIKDGSVIIQACARIPGRRAKIALSV 243
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTEL--------RDEKIDIVVWSPDSATFVINALRPAI 295
++DPVGA VG G+R+ AV L E ID +S + A+ PAI
Sbjct: 244 VSPNVDPVGATVGKGGARIDAVSKFLSKNLQDGSGGESIDAFEYSASPEILITRAMAPAI 303
Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355
V V + +D V V +Q S AIG+ G N+RLAS L G I++I S +
Sbjct: 304 VNSVKITQDGK-AIVYVNPDQKSKAIGKNGLNIRLASMLCGCEIELIETGSASEKKVSKE 362
Query: 356 NERTQ 360
Sbjct: 363 EGLKN 367
>gi|242308920|ref|ZP_04808075.1| transcription elongation factor NusA [Helicobacter pullorum MIT
98-5489]
gi|239524584|gb|EEQ64450.1| transcription elongation factor NusA [Helicobacter pullorum MIT
98-5489]
Length = 373
Score = 234 bits (596), Expect = 4e-59, Method: Composition-based stats.
Identities = 106/361 (29%), Positives = 192/361 (53%), Gaps = 9/361 (2%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+L I + ++YEK + + V V+ +S+ K A+ EI+ + + L++++ V
Sbjct: 4 ILDIIEGISYEKGLPIESVAEVVKESVIKVAKQTLDPNISYDAEIDKKNKTLHLYQVISV 63
Query: 69 VEEVENYTCQ-----ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+ +N + I L AR D I +G + L + R AV + + + K++
Sbjct: 64 CADDDNNAKEDKEHFIPLCEARKHDSEIKVGDELRYELSLENMNRSAVNALFRELEFKIQ 123
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDRV 182
+ + ++K +VG+I+SG+V R++ GN V++ ++ + I E R G V
Sbjct: 124 RLIETQLFDKYKAQVGKIVSGSVVRIDDLGNTFVEIDEVRAILPKKNRIKGEEFRIGQVV 183
Query: 183 KSYIYDVRREQRG-PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+ + V +++ + LSRT P+ + +L +EVPEI +G V++ + +R PG RAK+A+
Sbjct: 184 GAILKYVGIDKQNGISIELSRTTPKMLEELLRLEVPEIKDGEVEIVSCARIPGERAKVAL 243
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
+ + IDPVGA VG++G R+ AV EL++E ID + +S ++ AL PA++ VV+
Sbjct: 244 KTDSAKIDPVGATVGVKGVRINAVSKELKNESIDCIEYSSQPEIYIARALSPALIVSVVV 303
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
+ R V + EQ AIG+ G NVRLAS LTG+ I++ ++ + ++ +
Sbjct: 304 --EDKRAIVTISNEQKPKAIGKNGINVRLASMLTGYEIELKEIGAGNLQNSEHIHQENEK 361
Query: 362 F 362
Sbjct: 362 N 362
>gi|300933074|ref|ZP_07148330.1| transcription elongation factor NusA [Corynebacterium resistens DSM
45100]
Length = 331
Score = 233 bits (594), Expect = 6e-59, Method: Composition-based stats.
Identities = 116/349 (33%), Positives = 188/349 (53%), Gaps = 31/349 (8%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ A+ ++ ++ +++ + + ++ + L + V+I+ +G+++++++
Sbjct: 5 MAALRALEAQEGVEFHDLINGIKRGLLESYKELTRYEGWVEVDIDGTSGEVTVYQV---- 60
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
+RD ++ P DFGR + + I +++EA R
Sbjct: 61 ----------------ERDEDGEV--TGRFDDTPSDFGRAGAMAVRDAIRYRIKEARVQR 102
Query: 130 QYLEFKDKVGEIISGTVKRV----EYGNVIVDLG----NSDGVIRRDETISRENLRPGDR 181
Y E+ D ++SG V R E G V+V LG DG I E + E L G R
Sbjct: 103 DYDEYADLRYRVVSGVVTRNAMANERGVVVVHLGTEAKGKDGEILPAEQLPGEKLEHGMR 162
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
VK+Y+ DV + R Q+++SRTHP+ + LF +EVPE+ +G V++ +V+R+ G R K+AV
Sbjct: 163 VKAYVTDVIKNSRFVQIIMSRTHPELVRGLFALEVPEVADGSVEIVSVAREAGHRTKIAV 222
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+ ++ GAC+G RG RV A+ EL EKIDI+ +S D A +V NAL P+ V +V +
Sbjct: 223 RSTIKGLNAKGACIGPRGQRVAAIQRELGGEKIDIIDFSEDPAVYVGNALSPSKVVRVDV 282
Query: 302 -DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
D D +VP QLSLAIG+ GQN RLA++LTGW IDI E + +
Sbjct: 283 TDPDFQVARAVVPDYQLSLAIGKEGQNARLAARLTGWKIDIRPETDAAQ 331
>gi|227504824|ref|ZP_03934873.1| transcription elongation factor NusA [Corynebacterium striatum ATCC
6940]
gi|227198674|gb|EEI78722.1| transcription elongation factor NusA [Corynebacterium striatum ATCC
6940]
Length = 338
Score = 233 bits (594), Expect = 7e-59, Method: Composition-based stats.
Identities = 123/358 (34%), Positives = 193/358 (53%), Gaps = 43/358 (12%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSI---------QKAARSLYGTMSDIRVEINPETGDI 60
L+ + E+ I +L +A ++ Q AA GT S RV+I+ +TG +
Sbjct: 5 LEALRTIESERGIQVKDLLEAIAGALLYSYLDYREQSAAGKSEGTKS--RVDIDADTGAV 62
Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLP-PMDFGRVAVQSAKQVII 119
++ +V E + G V+S+ P +F RV Q+ ++ II
Sbjct: 63 TV-----IVTE-----------------SDPETGEVISEYDDTPENFSRVGAQAVREAII 100
Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETI 171
+K+REAE + Y + + G ++SG V+R N V+V LG + D ++ E +
Sbjct: 101 RKLREAEAEVTYESYSELTGRVVSGIVQRDVRANERGVVVVQLGTELDSQDAILLPAEQL 160
Query: 172 SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSR 231
E L GDR+K+Y+ V R Q+ LSRTHP+ + LF +E+PE+ +G V++ A++R
Sbjct: 161 PGEKLEHGDRIKAYVVGVTRNGAQVQITLSRTHPELVRGLFELEIPEVGDGAVELVAIAR 220
Query: 232 DPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINAL 291
+ G R+K++V ++ GAC+G RG RV ++ EL EKIDI+ ++ D A +V N+L
Sbjct: 221 EAGHRSKVSVIGHAKGLNAKGACIGPRGERVNNIMRELGGEKIDIIDYNEDPAVYVGNSL 280
Query: 292 RPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
P+ V +V +D D V VP QLSLAIG+ GQN RLA++LTGW IDI ++
Sbjct: 281 APSKVVRVEVVDPDAQVARVTVPDYQLSLAIGKEGQNARLAARLTGWKIDIHSDAAQD 338
>gi|300858700|ref|YP_003783683.1| transcription elongation protein [Corynebacterium
pseudotuberculosis FRC41]
gi|300686154|gb|ADK29076.1| transcription elongation protein [Corynebacterium
pseudotuberculosis FRC41]
gi|302206410|gb|ADL10752.1| Transcription elongation protein [Corynebacterium
pseudotuberculosis C231]
gi|302330966|gb|ADL21160.1| Transcription elongation protein [Corynebacterium
pseudotuberculosis 1002]
gi|308276653|gb|ADO26552.1| Transcription elongation protein [Corynebacterium
pseudotuberculosis I19]
Length = 332
Score = 232 bits (593), Expect = 7e-59, Method: Composition-based stats.
Identities = 116/348 (33%), Positives = 186/348 (53%), Gaps = 35/348 (10%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARS----LYGTMSDIRVEINPETGDISLFRL 65
+ + E+ + + ++ +A ++ + R + RV+I+ TG +S+
Sbjct: 5 IHALKLIESERKVPVEELIETIARALLFSYREFKDTNVEENTRARVDISATTGLVSV--- 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+V E++ +S P +FGRV Q+ + I +++REA
Sbjct: 62 --IVSELDEEGNVLS-----------------EYDDTPANFGRVGAQAVRDAIKKRLREA 102
Query: 126 ERDRQYLEFKDKVGEIISGTV----KRVEYGNVIVDLG----NSDGVIRRDETISRENLR 177
E + Y + + G ++SG V E G +V LG DG++ E I E L
Sbjct: 103 ETWKAYDAYSEYEGRVVSGIVQADAYANERGITVVHLGTEAEGQDGILIPAEQIPGEKLV 162
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237
GDRVK Y+ V R R Q+ LSRTHP+ + +LF +E+PE+ +G V++ +++R+ G R+
Sbjct: 163 HGDRVKCYVVGVNRTPRNLQINLSRTHPELVRRLFELEIPEVADGSVEIISIAREAGHRS 222
Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297
K+AV ++ ++ GAC+G RG RV ++ EL EKIDI+ + D A +V NAL P+ V
Sbjct: 223 KVAVRANIKGLNAKGACIGPRGQRVNNIMNELGGEKIDIIDFDEDPAKYVGNALAPSKVV 282
Query: 298 KVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344
V + D + +V VP QLSLAIG+ GQN RLA++LTGW IDI ++
Sbjct: 283 HVEITDLEGQAAKVTVPDYQLSLAIGKEGQNARLAARLTGWKIDIRSD 330
>gi|322379095|ref|ZP_08053497.1| transcription elongation factor NusA [Helicobacter suis HS1]
gi|322381039|ref|ZP_08055069.1| transcription elongation factor NusA [Helicobacter suis HS5]
gi|321146533|gb|EFX41403.1| transcription elongation factor NusA [Helicobacter suis HS5]
gi|321148467|gb|EFX42965.1| transcription elongation factor NusA [Helicobacter suis HS1]
Length = 384
Score = 232 bits (593), Expect = 7e-59, Method: Composition-based stats.
Identities = 105/340 (30%), Positives = 186/340 (54%), Gaps = 10/340 (2%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+L I + +AYEK + + + V+ +SI K A+S T ++ I+ D++L ++EV
Sbjct: 14 ILDIVELIAYEKGLSLETIKDVVKNSILKVAQSCLDTEANF--VIDDSNKDLALLHVVEV 71
Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+ ++ +SLK A DPS+ ++ + D R AV + + + ++
Sbjct: 72 CADGDPKLEQDPKNTLSLKEAHKSDPSLKPNDLLHYEISLKDMKRGAVNTLFKDLEYNIQ 131
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182
+ D+ + ++K + I++G V ++ N +++ ++ I E+ + G+ V
Sbjct: 132 RSLEDQYFQKYKSMLNTIVTGVVLDIDANQNTYIEIDGLQAILALKNRIKGESFKVGNSV 191
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
++ + +VR ++G + LSRT P+F+ L +EVPEI + ++V ++R PG RAKLA+
Sbjct: 192 RAILKNVRFSKQGLVLELSRTTPKFLEALLRLEVPEIADEEIEVMGIARIPGDRAKLALR 251
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
S +S IDP+GA VG++G R+ A+ EL +E ID V ++ ++ N L PA ++ L
Sbjct: 252 SHNSQIDPIGATVGVKGVRINAISKELCNESIDCVHYNDIPEIYIANTLSPAQTIRIKLS 311
Query: 303 ED--VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340
E+ R V + +Q S AIG+ G NVRLA LTG+ ID
Sbjct: 312 EEQGEKRALVTLYGDQKSKAIGKNGVNVRLACMLTGYNID 351
>gi|149194205|ref|ZP_01871303.1| transcription elongation factor NusA [Caminibacter mediatlanticus
TB-2]
gi|149136158|gb|EDM24636.1| transcription elongation factor NusA [Caminibacter mediatlanticus
TB-2]
Length = 356
Score = 232 bits (593), Expect = 8e-59, Method: Composition-based stats.
Identities = 107/346 (30%), Positives = 176/346 (50%), Gaps = 8/346 (2%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ + VA EK +D + V SI K A+ + G DI V++ E + +++ V
Sbjct: 4 IQDLLSLVANEKGLDFEEVKEAFKRSIIKTAKKILG---DIDVDVEMEDKKLKIYQNFTV 60
Query: 69 VEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
V + + + L ARD D + IG + L GR + ++ +++
Sbjct: 61 VNDDRALNEPEKYLYLDEARDFDENAQIGDKLRAELDLSKLGRSGAMALQREFEREITRL 120
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
+ Y + K+ I+SG V +V+ N V+L GV+ R I E + GD +K+
Sbjct: 121 LENEIYRKLISKLNTIVSGEVIKVDNDENTYVELDGVRGVLPRRNRIKGEKFKVGDVLKA 180
Query: 185 YIYDVRREQRGPQ-VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+ V + + + LSRT P+F+ KL VPE+ +G++++ +R PG R+K+AV S
Sbjct: 181 LLKYVHFDNKKGITIELSRTSPKFLEKLIENAVPEVRDGLIKIHTSARIPGVRSKVAVSS 240
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
+ IDP+G +G G R+ A+ EL E ID++ +SP FV AL PAIV V +DE
Sbjct: 241 LNPKIDPIGTIIGKNGVRINAISNELAGENIDVIEYSPQPEIFVARALSPAIVKSVKIDE 300
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
G V V + + AIG+ G N+ LAS LT + I++ ++E+ +
Sbjct: 301 KNGIAYVDVDPSEKAKAIGKNGVNITLASMLTKYKIELKSQEKSTD 346
>gi|157165500|ref|YP_001467013.1| transcription elongation factor NusA [Campylobacter concisus 13826]
gi|112800050|gb|EAT97394.1| transcription termination factor NusA [Campylobacter concisus
13826]
Length = 367
Score = 232 bits (593), Expect = 9e-59, Method: Composition-based stats.
Identities = 105/340 (30%), Positives = 185/340 (54%), Gaps = 10/340 (2%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ I +++A EK+++ + V + ++ A+ +YG + V I+ ++ L++ + +
Sbjct: 4 ISDIIESIANEKNLEIEDVKERVIRALINTAKRVYGENYEYDVSID-ANKNLKLYQKISI 62
Query: 69 VEEV-----ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
V E+ +SLK A+ D ++IG ++ L + GR A Q+ + + ++
Sbjct: 63 VANDDERLAEDNEHFLSLKEAKKIDSGVEIGDELTYELSLDNLGRTAAQTLHKELEYHIQ 122
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRV 182
++ ++ + G ++ G V RV+ N +++ ++ R I E + GD V
Sbjct: 123 RLVEEKILQKYNEMSGHMVFGPVVRVDNDENTFIEIDELRAILPRKNRIKGEKFKVGDVV 182
Query: 183 KSYIYDVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
K+ I V ++ G +V LSRT P+F+ L EVPEI +G + ++ +R PG RAK+A+
Sbjct: 183 KAVIRKVFTDKNLGIKVELSRTSPKFLEALLTSEVPEIKDGGIIIQGSARIPGERAKVAL 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+ +IDPVGA VG +G R+ AV EL E ID + ++ + A V A+ PAI+T V +
Sbjct: 243 ISTTPNIDPVGATVGTKGVRINAVSKELHGESIDAIEYTTEPAILVARAMAPAIITSVKI 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
+ + V + EQ S AIG+ G N+RLAS LTG+ I++
Sbjct: 303 --EENKAIVTLASEQKSKAIGKNGINIRLASMLTGYEIEL 340
>gi|300780963|ref|ZP_07090817.1| transcription termination factor NusA [Corynebacterium genitalium
ATCC 33030]
gi|300532670|gb|EFK53731.1| transcription termination factor NusA [Corynebacterium genitalium
ATCC 33030]
Length = 341
Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats.
Identities = 124/359 (34%), Positives = 190/359 (52%), Gaps = 39/359 (10%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAAR--SLY------GTMSDIRVEINPETGDIS 61
+ + E I D +L +A ++ A R G + RV+I+ +TG ++
Sbjct: 5 IAALKQIESEAGIPVDDLLGTIASALLFAYREGKDEFGTGAAGEGTKARVDIDTQTGAVA 64
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
+ V E+++ IS P++F RV Q+ + I+++
Sbjct: 65 VM-----VSELDDDGNVIS-----------------EYDDTPVNFSRVGAQAVRDAILKR 102
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKR----VEYGNVIVDLGN----SDGVIRRDETISR 173
+R A +R Y + + G+++SG V+R E G V+V LG DG++ E I
Sbjct: 103 MRTAADNRAYSAYSELEGQVVSGVVQRDASANERGIVVVQLGTESDPQDGILLPAEQIPG 162
Query: 174 ENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDP 233
E L GDRVK Y+ V R V LSRTHP+ + LF +EVPE+ +G V++ A++R+
Sbjct: 163 EKLEHGDRVKCYVVGVSGGDRRTTVNLSRTHPELVRGLFALEVPEVADGSVEIVAIAREA 222
Query: 234 GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP 293
G R+K+AV I+ GAC+G RG+RV ++ L EKIDIV +S D A +V N+L P
Sbjct: 223 GHRSKVAVKGVAKGINAKGACIGPRGARVTNIMESLGGEKIDIVDYSDDPAVYVGNSLAP 282
Query: 294 AIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351
+ V +V + + V+VP QLSLAIGR GQN RLA++LTGW IDI ++ + S +
Sbjct: 283 SKVVRVDVVDHDAQTARVVVPDYQLSLAIGREGQNARLAARLTGWKIDIHSDADLSAGQ 341
>gi|38234060|ref|NP_939827.1| transcription elongation factor NusA [Corynebacterium diphtheriae
NCTC 13129]
gi|38200322|emb|CAE50007.1| Putative N utilization related protein [Corynebacterium
diphtheriae]
Length = 332
Score = 232 bits (591), Expect = 2e-58, Method: Composition-based stats.
Identities = 121/347 (34%), Positives = 191/347 (55%), Gaps = 35/347 (10%)
Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDISLFRLL 66
Q A+ +++I D +L +A ++ A + S RV+IN TG +S+
Sbjct: 6 QALKAIEADRNIAVDELLETIARALLFAYQEYKDTNTVENSRARVDINSVTGHVSV---- 61
Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
+V E++ + P +FGRV Q+ + I++++REAE
Sbjct: 62 -IVSELDEDGVVTT-----------------EYDDTPENFGRVGAQAVRDAIVRRLREAE 103
Query: 127 RDRQYLEFKDKVGEIISGTVKR----VEYGNVIVDLG----NSDGVIRRDETISRENLRP 178
+ Y + + G ++SG V+ E G V++ LG DG++ E I E+ +
Sbjct: 104 TLKAYDAYSEYEGRVVSGIVQADIFANEKGIVVIHLGTEVDGQDGILIPAEQIPGESFKH 163
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
GDRVK+Y+ + R R Q+ LSRTHP+ + +LF +EVPE+ +G V++ ++R+ G R+K
Sbjct: 164 GDRVKAYVVGINRTPRDLQINLSRTHPELVRRLFELEVPEVADGSVEIIGIAREAGHRSK 223
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV ++ ++ GAC+G RG RV ++ EL EKIDI+ + D A FV NAL P+ V
Sbjct: 224 VAVKATVKGLNAKGACIGPRGQRVNNIMNELGGEKIDIIDFDDDPAKFVGNALAPSKVVH 283
Query: 299 VVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344
V + D + +V VP QLSLAIG+ GQN RLA++LTGW IDI ++
Sbjct: 284 VEITDAEAQTAQVTVPDYQLSLAIGKEGQNARLAARLTGWKIDIRSD 330
>gi|163782301|ref|ZP_02177299.1| transcription elongation factor NusA [Hydrogenivirga sp.
128-5-R1-1]
gi|159882334|gb|EDP75840.1| transcription elongation factor NusA [Hydrogenivirga sp.
128-5-R1-1]
Length = 333
Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats.
Identities = 122/353 (34%), Positives = 203/353 (57%), Gaps = 25/353 (7%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ ++ + VA EK + VV + ++I A + IR ++
Sbjct: 5 IRKLIEQVAKEKDLPERVVEYALKNAIAIAIKK----DKRIRENLDI------------- 47
Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
E + ++ + + R+ + + D R+A +AK+ + ++ AER+
Sbjct: 48 --EFTDEGIKVYVVKGKGREK-----ERLPLDISTEDVNRIAAFAAKEEFLNELERAERE 100
Query: 129 RQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
R +LE+K+ GE+++G V++ + G+++VDLG + V+ R E I E GD+VK+ +
Sbjct: 101 RGFLEYKELEGEVVTGIVRKIYDNGDILVDLGKVEAVLPRREQIPGETYHVGDKVKALLL 160
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
+V++ P+++LSRTHP F+ +L E+PE+ + ++VK+V+R PG RAK+AV++ D
Sbjct: 161 EVKKMHGEPRLILSRTHPLFLKRLLETEIPEVADKEIEVKSVARIPGERAKVAVYAKDMK 220
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVG VG+RGSR+Q + EL EKID+V W+ D F+ AL PA T + L + R
Sbjct: 221 MDPVGIVVGLRGSRIQPISDELHGEKIDVVRWTDDEEEFIRRALSPAQPTAIRLIPEEER 280
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
EV VP++QLSLAIGRRG NV+LA +LTGW ID+++EE+ + E ++
Sbjct: 281 AEVAVPQDQLSLAIGRRGTNVKLAHRLTGWHIDVMSEEDFEKLTELRETESSE 333
>gi|319955949|ref|YP_004167212.1| nusa antitermination factor [Nitratifractor salsuginis DSM 16511]
gi|319418353|gb|ADV45463.1| NusA antitermination factor [Nitratifractor salsuginis DSM 16511]
Length = 375
Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats.
Identities = 113/363 (31%), Positives = 190/363 (52%), Gaps = 10/363 (2%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+L I +++A+EK++ + L +++ A+ L G + VEI+ +T ++++L V
Sbjct: 4 ILSIIESMAHEKNLSVESALEAFKEALINTAKRLEGEEGEYEVEIDHDTQSYHIYKVLTV 63
Query: 69 VEEV-----ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
V E I++ A+ D I+ G + + ++GR A + Q + ++
Sbjct: 64 VNNDDPRAQEEPEKYITVDEAKSYDEEIEPGDKIRSEIHLEEYGRTAAANLFQELEYHIQ 123
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDRV 182
+ ++K KVG II GTV RV+ GN V++G G++ + I E+ + GD +
Sbjct: 124 RRIEQDLFDKYKAKVGSIIIGTVSRVDDAGNTYVEIGELKGILSQRNRIKGESFKTGDTL 183
Query: 183 KSYIYDVRREQRG-PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
K+ + V + + + L+RT P+F+ +L EVPEI +G V++ + +R PG RAK+A+
Sbjct: 184 KALLRFVSIDPKYGMHLELTRTAPKFLEELMKREVPEIQDGAVEIISSARIPGERAKVAL 243
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S IDP+GA VG RG R+ AV EL E ID + +SP +V AL PAIV V +
Sbjct: 244 KSDRPDIDPIGAAVGQRGVRINAVSEELCGENIDCIEYSPIPEIYVTRALSPAIVQNVRI 303
Query: 302 ---DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
+ + V + +Q + AIG+ G N+RLAS LT + I++ E E+
Sbjct: 304 ENNNTAEQKAIVDITSDQKAKAIGKSGINIRLASMLTKYQIELNEVEGIVERAPSGTEEK 363
Query: 359 TQF 361
T+
Sbjct: 364 TKD 366
>gi|296117673|ref|ZP_06836257.1| transcription termination factor NusA [Corynebacterium ammoniagenes
DSM 20306]
gi|295969404|gb|EFG82645.1| transcription termination factor NusA [Corynebacterium ammoniagenes
DSM 20306]
Length = 340
Score = 231 bits (588), Expect = 3e-58, Method: Composition-based stats.
Identities = 120/355 (33%), Positives = 187/355 (52%), Gaps = 40/355 (11%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARS----LYGTMSDIRVEINPETGDISLFRL 65
+ A+ E+ + +L+ +A + A RV+I+ +TG++S+
Sbjct: 5 IDALRAIETERGVPVTDLLTSVASGLLYAYTEYRDGNIEENHKARVDIDADTGEVSV--- 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV E + I+ P +FGRVA + + I +++RE
Sbjct: 62 --VVTESDEDGEIIT-----------------EFDDTPTNFGRVAAPAVRDAIFKRLREV 102
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN---------SDGVIRRDETIS 172
E DR Y + + G ++SG V++ + N V+V LG DG++ E I
Sbjct: 103 EADRAYDSYAELQGTVVSGVVQQDSHANSRGIVVVQLGTEIDIKEGKTQDGILLPAEQIP 162
Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRD 232
E L G RV++Y+ V++E QVLLSRTHP+ + LF +EVPE+ +G V++ A++R+
Sbjct: 163 GERLTHGTRVRAYVVGVQKEGARVQVLLSRTHPELVRGLFELEVPEVLDGAVEIVAIARE 222
Query: 233 PGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALR 292
G R+K+AV ++ GAC+G RG RV V+ L EKIDI+ ++ D +V NAL
Sbjct: 223 AGHRSKVAVTGQVKGLNAKGACIGPRGQRVTNVMQSLGGEKIDIIDFNEDPGVYVGNALA 282
Query: 293 PAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346
P+ V +V + D + V VP QLSLAIG+ GQN RLA++LTGW IDI ++ +
Sbjct: 283 PSKVVRVEVLDPEAQLARVTVPDYQLSLAIGKEGQNARLAARLTGWKIDIHSDAD 337
>gi|313681423|ref|YP_004059161.1| nusa antitermination factor [Sulfuricurvum kujiense DSM 16994]
gi|313154283|gb|ADR32961.1| NusA antitermination factor [Sulfuricurvum kujiense DSM 16994]
Length = 377
Score = 231 bits (588), Expect = 3e-58, Method: Composition-based stats.
Identities = 110/363 (30%), Positives = 189/363 (52%), Gaps = 11/363 (3%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+L I +++A EK ++ D V + S + A+ + +I+ T + L +++ V
Sbjct: 4 ILDIIESIANEKGLNPDRVQEAIKTSFIQTAKRIINPTFAFEADIDDRTKQVRLRQIITV 63
Query: 69 VEEV------ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
V + E + + A + D +IG + +GR A + + I +
Sbjct: 64 VADDAPELEGEEAGAYMGITAALEIDDEAEIGDQLQMEHDIESYGRSAFATLHREIEFHI 123
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDR 181
+ + Y ++K K+ +I+SG V RV+ N +++ V+ I E + GD
Sbjct: 124 QRLVENELYDKYKSKINQIVSGRVTRVDSDQNTTIEIDEIRAVLPMKSRIKGEKFKVGDV 183
Query: 182 VKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
V + + V ++ G + LSRT P+F+ +L +EVPEI +GIV ++ +R PG RAK+A
Sbjct: 184 VSAIVRRVHVDKSNGISMELSRTAPKFLEELLALEVPEIKDGIVVIEKCARIPGERAKIA 243
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
++++ IDP+GA VG+RG R+ AV EL E ID V +S F+ A+ PAI++ VV
Sbjct: 244 LYTNRPQIDPIGATVGVRGVRINAVSEELCGENIDCVEYSSSPELFISRAMSPAIISAVV 303
Query: 301 LDE---DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357
+ E + + V +P +Q S AIG+ G N+RLAS LTG+TI++ + +K E
Sbjct: 304 VTENEGEEKKAVVTLPSDQKSKAIGKSGINIRLASMLTGYTIELNEVGGSAQMGEKAQEE 363
Query: 358 RTQ 360
+ +
Sbjct: 364 KKE 366
>gi|154148222|ref|YP_001406096.1| transcription elongation factor NusA [Campylobacter hominis ATCC
BAA-381]
gi|153804231|gb|ABS51238.1| transcription termination factor NusA [Campylobacter hominis ATCC
BAA-381]
Length = 366
Score = 230 bits (587), Expect = 4e-58, Method: Composition-based stats.
Identities = 109/362 (30%), Positives = 180/362 (49%), Gaps = 10/362 (2%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ I +++A EK ++ V + + + A+ ++G +I+P + I LF+ + V
Sbjct: 4 ITDIIESIANEKGLEEAEVSEKVKIAFIQTAKKIFGEDFVYESQIDPVSKKIKLFQKVSV 63
Query: 69 VEEVE------NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
V N I+L A+ DP+I+IG +S + GR A Q + +
Sbjct: 64 VANDFVLKDGLNEQNFITLDKAKKIDPTIEIGDEISYDINLEKIGRTASQILFNELNYHI 123
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDR 181
+ ++ + +K+GE++ G+V V+ V++ + + I E GD
Sbjct: 124 QRLLEEKILKHYNEKIGELVHGSVTGVDREQTTYVEVDDIKAYLPMKNRIKDEKFEVGDI 183
Query: 182 VKSYIYD-VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
+ + I + +G ++ LSRT P+F+ L EVPEI +G V +KA +R PG RAK+A
Sbjct: 184 INAVIRHVFIDKNQGIKIELSRTSPKFLEALLKAEVPEIKDGSVILKACARIPGKRAKIA 243
Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
+ + +IDPVGA VG +G R+ AV EL+ E ID++ WS V A+ PAI V
Sbjct: 244 LSAISPNIDPVGATVGTKGVRINAVSAELKKENIDVIEWSNQPEILVARAMSPAIANSVK 303
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+ ED + V + Q S AIG+ G N+RLAS LTG I+++ E ++ +
Sbjct: 304 ISED--KAIVYINPAQKSKAIGKSGLNIRLASMLTGLQIELVETGESKKTNEEAMQDLKN 361
Query: 361 FF 362
F
Sbjct: 362 LF 363
>gi|194246707|ref|YP_002004346.1| transcription elongation factor NusA [Candidatus Phytoplasma mali]
gi|193807064|emb|CAP18500.1| Transcription termination factor [Candidatus Phytoplasma mali]
Length = 358
Score = 230 bits (586), Expect = 6e-58, Method: Composition-based stats.
Identities = 97/359 (27%), Positives = 193/359 (53%), Gaps = 9/359 (2%)
Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63
N + I A E + ++ + ++ R + S +V+I + +I+L+
Sbjct: 1 MNSKDFFNIISEFAEENELTKEQIKDAFTKALIYGCRKAHKIKS-CKVDIKEDRNEINLY 59
Query: 64 RLLEVVEEVENY------TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117
+ +++ E Y I L+ A+ + +G +++ P DF AV+ K
Sbjct: 60 KQYYIIDPEEQYLNNYKDYTHIDLEEAKKIKKRVKVGQIINIKTNPKDFNLYAVKDFKNK 119
Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENL 176
+++ + +R+ Y FK G++I+ V ++L ++ + ET+++E
Sbjct: 120 FKEELTKQKRENIYDYFKSYEGKLINAKVIGSNSKFYYLELEKEMTTLLPKKETLNKEIF 179
Query: 177 RPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236
GDR++ YI +V++ + P++ +S+TH + K+F +PEI +G +++ ++R PG R
Sbjct: 180 AEGDRIRVYIVEVQKTTKLPRIFVSQTHIGLVTKIFEDWIPEINDGTLKIMMIARIPGER 239
Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296
K+ +FS++ +DP+G+C+G G+R+++++ L+ EKID+ +WS + + N+L+PA +
Sbjct: 240 TKIGLFSNNPQVDPIGSCIGKNGNRIKSIIKLLQGEKIDLFLWSEKNEELISNSLQPAKI 299
Query: 297 TKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354
+V + + + + VIV +QLSLAIG+ G+NV+LA+Q T W IDI T + +
Sbjct: 300 FQVNIKNLENKKALVIVEDDQLSLAIGKLGKNVKLAAQATKWNIDIKTLSQLKKIKTMT 358
>gi|307720459|ref|YP_003891599.1| NusA antitermination factor [Sulfurimonas autotrophica DSM 16294]
gi|306978552|gb|ADN08587.1| NusA antitermination factor [Sulfurimonas autotrophica DSM 16294]
Length = 378
Score = 230 bits (586), Expect = 6e-58, Method: Composition-based stats.
Identities = 108/366 (29%), Positives = 188/366 (51%), Gaps = 13/366 (3%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+L IA+A+ +EK + + V+ + + + A+ + G +I+ +T +I + + + V
Sbjct: 4 ILDIAEAIGHEKGLQPEKVMEALKTAFVQTAKRVIGQNFAFEAQIDEDTKNIKIVQTITV 63
Query: 69 VEEVENYTCQ-------ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
V + + ISL AR+ D +++G + D+GR A + I
Sbjct: 64 VADDDEKLQDEEVAPAYISLTEAREYDDQVELGDQLQIDHDLEDYGRTAASQLHREIEYH 123
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLRPGD 180
++ D Y ++K KVG ++SG V RV+ N +++ V+ I E GD
Sbjct: 124 IQRLVEDEIYNKYKSKVGTLVSGRVTRVDAQNNTYIEVDEIRAVLPMKSRIKGEIFDVGD 183
Query: 181 RVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
+K+ + V ++ G Q+ LSRT P+F+ L +EVPEI G V ++ +R PG RAK+
Sbjct: 184 HIKAVVRRVNMDKENGMQIELSRTSPKFLEALLELEVPEIAEGSVIIEKAARIPGERAKI 243
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
A+ S+ +D VGA VG++G R+ AV EL E ID + ++ FV + PAI++ V
Sbjct: 244 ALLSTHPQVDAVGATVGVKGVRINAVSQELIGENIDCIEYTTIPELFVSRTMSPAIISHV 303
Query: 300 VLDE----DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355
+ + + + + +P +Q S AIG+ G N+RLAS LTG I+++ + + N
Sbjct: 304 EIVKNEEGENEKAIITLPADQKSKAIGKSGINIRLASMLTGMQIELLENDAVTTNEDGTV 363
Query: 356 NERTQF 361
E+ +
Sbjct: 364 EEKKEN 369
>gi|296274352|ref|YP_003656983.1| transcription termination factor NusA [Arcobacter nitrofigilis DSM
7299]
gi|296098526|gb|ADG94476.1| transcription termination factor NusA [Arcobacter nitrofigilis DSM
7299]
Length = 391
Score = 229 bits (585), Expect = 7e-58, Method: Composition-based stats.
Identities = 108/363 (29%), Positives = 189/363 (52%), Gaps = 22/363 (6%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
++ I D++AYEK I + V + + +++ K + EI+ + + LF+ +EV
Sbjct: 4 IIDILDSIAYEKGIKSEHVETALKEALIKTGEKMVDHTLIFDAEIDRKNKRLKLFQKIEV 63
Query: 69 VEEVE---------------NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQS 113
+++ + N I+L A++ D +DIG + L + GR A
Sbjct: 64 IKDDDKRLQGEEVDQYNNIINPENFIALSEAKEIDADLDIGDFLDYDLEFENMGRNAATI 123
Query: 114 AKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETIS 172
+++ + ++K K+G+II+G+V RV+ N V++G G++ R I
Sbjct: 124 LHNNFEYRLQRYIEENLVSKYKSKIGKIINGSVTRVDRAENTFVEIGEVKGMLTRKSRIK 183
Query: 173 RENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSR 231
E + GD +K+ + V ++ G + LSRT P+F+ L +EVPE+ + + ++A +R
Sbjct: 184 GETFKVGDNLKAVVKAVTIDKTNGLIIELSRTSPKFLEALLALEVPELKDERITIEASAR 243
Query: 232 DPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINAL 291
PGSRAK+A+ + D IDP+G+ VG++G R+ AV +L E ID V +S FV AL
Sbjct: 244 IPGSRAKIALSTMDPQIDPIGSVVGVKGVRITAVSQQLHGENIDCVEYSTIPEMFVARAL 303
Query: 292 RPAIVTKVVLDEDVG-----RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346
PAI+ V + + + V + +Q S AIG+ G N+RLAS LT I+++ +
Sbjct: 304 SPAIIKSVQIIKSEKYDEKDKAIVTILSDQKSKAIGKSGLNIRLASMLTKCEIELVEIGD 363
Query: 347 DSI 349
++
Sbjct: 364 NTQ 366
>gi|303233400|ref|ZP_07320069.1| transcription termination factor NusA [Atopobium vaginae
PB189-T1-4]
gi|302480529|gb|EFL43620.1| transcription termination factor NusA [Atopobium vaginae
PB189-T1-4]
Length = 413
Score = 229 bits (584), Expect = 9e-58, Method: Composition-based stats.
Identities = 117/368 (31%), Positives = 193/368 (52%), Gaps = 45/368 (12%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
+++N +E L D + + +D ++ + ++ K + RV I+ TG +
Sbjct: 1 MASNMVEAL--ID-ICKKTHLDELYIIDRLEQTLAKNYADILHLEYGARVTIDRATGKVY 57
Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDP---LPPMDFGRVAVQSAKQVI 118
++ ++ +P G + P + R+ VQ KQ +
Sbjct: 58 VY------------------ELVPKGEPDEQTGEYEDFEERDVTPKEASRLVVQHVKQEL 99
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIR----------R 167
+ +R ++R + Y EF +++G++I+GTV + I+ + + + R
Sbjct: 100 AEIIRNSQRQQIYEEFSNRIGDLITGTVLQTTSDFAIIKIRDGVEAELPYFDPHRYPEER 159
Query: 168 DETISRENLRPGDRVKSYIYDVRRE----------QRGPQVLLSRTHPQFMVKLFHMEVP 217
+E E R+ + I DVR ++ P +++SR + + +LF +EVP
Sbjct: 160 NERPPHEYYVHNQRLHALIVDVRNPSSTSAPVRGERQRPSIVVSRARRELISRLFELEVP 219
Query: 218 EIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIV 277
EIY+G+V +++V+RD G R+K+AV S D +DPVGACVG +G+RV+ VV+ELR E++D+V
Sbjct: 220 EIYDGVVTIRSVARDAGVRSKIAVSSQDPHLDPVGACVGPKGARVRTVVSELRGERVDVV 279
Query: 278 VWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337
W D A V +AL PA VT+V++DE+ VIVP +QLSLAIG+ GQN RLA+ LTG
Sbjct: 280 QWYDDPAQNVASALSPATVTRVLVDEEHNHATVIVPDDQLSLAIGKGGQNARLAASLTGM 339
Query: 338 TIDIITEE 345
IDI E
Sbjct: 340 HIDIKNES 347
>gi|42565347|gb|AAS20956.1| NusA [Clover phyllody phytoplasma]
Length = 357
Score = 229 bits (584), Expect = 9e-58, Method: Composition-based stats.
Identities = 104/358 (29%), Positives = 192/358 (53%), Gaps = 12/358 (3%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
M+S N ++ D +A E+ +D+D V+ A + + + S ++++ + +I
Sbjct: 1 MISKN---FFKLLDKIAQERDLDKDQVIGAFAKGLISGCKKNHKVKS-CKIQLKEDKSEI 56
Query: 61 SLFRLLEVVEEVEN------YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSA 114
L++ V +E + I+L+ A+ P IG V+ + P DF AV+
Sbjct: 57 ILYKQFLVADEATMSTINLKESTPITLEEAQQIKPHAKIGQVIDIKVDPKDFNLYAVKEF 116
Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISR 173
K +++ + +R+ Y FK + G++IS + ++L ++ + E S
Sbjct: 117 KNQFNEELTKKKRENIYNFFKQQEGKLISAKIISENDKFYNLELEKEITTLLPKKEIASN 176
Query: 174 ENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDP 233
++ G+R++ ++ +VR+ + P++ +S H +VK+ +PEI GIV++ V+R
Sbjct: 177 NEMQVGERIQVFLSEVRKTTKWPKIFVSCNHVGLVVKVLEENIPEIQEGIVKIAGVARIS 236
Query: 234 GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP 293
G R K+ + S D+ +D +G+C+G R +R++ V+ L+ EK+D+ VWS D + NAL+P
Sbjct: 237 GERTKIGLLSCDAQVDAIGSCIGERSNRIKNVIKILKGEKVDLFVWSDDPQELIANALKP 296
Query: 294 AIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350
A +VV+ D+ IVP +Q SLAIG+ G+NV+LA ++T W IDI T ++ I
Sbjct: 297 ASCLQVVIKDDINKYALAIVPDDQFSLAIGKLGKNVKLAVEVTKWNIDIKTLDQAQIE 354
>gi|85057852|ref|YP_456768.1| transcription elongation factor NusA [Aster yellows witches'-broom
phytoplasma AYWB]
gi|84789957|gb|ABC65689.1| N utilization substance protein A [Aster yellows witches'-broom
phytoplasma AYWB]
Length = 357
Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats.
Identities = 105/358 (29%), Positives = 191/358 (53%), Gaps = 12/358 (3%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
M+S N ++ D +A E +D+D V+ A + + + S ++ + + +I
Sbjct: 1 MISKN---FFKLLDKIAQESGLDKDQVIDAFAKGLISGCKKNHKVKS-CKIHLKEDKSEI 56
Query: 61 SLFRLLEVVEEVE------NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSA 114
L++ V +E + I+L+ A+ P IG V+ + P DF AV+
Sbjct: 57 ILYKQFLVADEATISTINLKESTPITLEEAQQIKPHAKIGQVIDIKVDPKDFNLYAVKEF 116
Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISR 173
K +++ + +R+ Y FK + G++IS + ++L ++ + E S
Sbjct: 117 KNQFNEELTKKKRENIYNFFKQQEGKLISAKIISENDKFYNLELEKEITTLLPKKEIASN 176
Query: 174 ENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDP 233
++ G+R++ ++ +V++ + P++ +S H +VK+ +PEI GIV++ V+R
Sbjct: 177 NEMQVGERIQVFLSEVKKTTKWPKIFVSCNHVGLVVKVLEENIPEIQEGIVKIAGVARIS 236
Query: 234 GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP 293
G R K+ +FS D+ ID +G+C+G R +R++ V+ L+ EKID+ +WS D + NAL+P
Sbjct: 237 GERTKIGLFSCDAQIDAIGSCIGERSNRIKNVIKILKGEKIDLFIWSDDPQELIANALKP 296
Query: 294 AIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350
A +VV+ D+ IVP +Q SLAIG+ G+NV+LA ++T W IDI T ++ I
Sbjct: 297 ASCLQVVIKDDINKCALAIVPDDQFSLAIGKLGKNVKLAVEVTKWNIDIKTLDQAQIE 354
>gi|224417809|ref|ZP_03655815.1| transcription elongation factor NusA [Helicobacter canadensis MIT
98-5491]
gi|253827150|ref|ZP_04870035.1| transcription elongation factor NusA [Helicobacter canadensis MIT
98-5491]
gi|313141351|ref|ZP_07803544.1| transcription elongation factor [Helicobacter canadensis MIT
98-5491]
gi|253510556|gb|EES89215.1| transcription elongation factor NusA [Helicobacter canadensis MIT
98-5491]
gi|313130382|gb|EFR47999.1| transcription elongation factor [Helicobacter canadensis MIT
98-5491]
Length = 370
Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats.
Identities = 101/359 (28%), Positives = 191/359 (53%), Gaps = 8/359 (2%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+L I + ++YEK + + V+ V+ +S+ K A+ + EI+ + + L++++ V
Sbjct: 4 ILDIIEGISYEKGLPIESVMEVVKESVIKVAQQTLDSKILYDAEIDKKNKTLHLYQVISV 63
Query: 69 VEEV----ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
+ E+ I L AR D I +G + L + R AV + + + +++
Sbjct: 64 CSDDYEAKEDKEHFIPLSEARKHDSEIKVGDELRYELSLENMNRSAVNTLFRELEFRIQR 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183
+ + ++K ++G+I+SG+V R++ GN V++ ++ + I E + G +
Sbjct: 124 LIETQLFDKYKAQIGKIVSGSVVRIDDLGNTFVEIDEIRAILPKKNRIKGEEFKVGQVIG 183
Query: 184 SYIYDVRREQRG-PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
+ + V +++ + LSRT P+ + +L +EVPEI +G V++ A +R PG RAK+A+
Sbjct: 184 AVLKYVGIDKQNGISIELSRTTPKMLEELLRLEVPEIKDGEVEIVACARIPGERAKVALK 243
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
+ +DPVGA VG++G R+ AV EL++E ID + +S ++ AL PA++ VV+
Sbjct: 244 TDSMKVDPVGATVGVKGVRINAVSKELKNESIDCIEFSNQPEIYIARALSPALIVSVVV- 302
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361
+ + V + EQ AIG+ G NVRLAS LTG+ I++ + ++ ++
Sbjct: 303 -EDKKAVVSISSEQKPKAIGKNGINVRLASMLTGYEIELKEIDNGTLGDRQTKEPEKSN 360
>gi|288817343|ref|YP_003431690.1| transcription elongation factor [Hydrogenobacter thermophilus TK-6]
gi|288786742|dbj|BAI68489.1| transcription elongation factor [Hydrogenobacter thermophilus TK-6]
gi|308750950|gb|ADO44433.1| transcription termination factor NusA [Hydrogenobacter thermophilus
TK-6]
Length = 327
Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats.
Identities = 127/342 (37%), Positives = 204/342 (59%), Gaps = 25/342 (7%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
L ++ + VA EK++ +V + ++I A + ++VE+ E I ++ +
Sbjct: 5 LKKLIEQVAKEKNLPEWIVEGALKNAIALAVKKDRKLKEHLQVELLEE--GIKVYIVKRN 62
Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
E + +IS + R+A +AK+ ++++ +AE +
Sbjct: 63 NSETVRFPLEISTEDV----------------------NRIAAYAAKEEFLKELEKAEEE 100
Query: 129 RQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
R YLEF ++ GEI G V+RV E G+V+VDLG GV+ + E I +E+ R G+R+K+ +
Sbjct: 101 RGYLEFVEQEGEITVGIVRRVLENGDVLVDLGRVMGVLPKREQIPKESYRQGERIKALVL 160
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
+VR+ + +++LSRTHP+F+ KL EVPEI +G +++KA++R+PG RAK+ V + D
Sbjct: 161 EVRKHRGRYEIILSRTHPKFLRKLLEAEVPEIKSGEIEIKAITREPGERAKVLVHAKDMK 220
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVG VG+RGSR+ V EL EKID++ W+ + + +L PA VTKV L R
Sbjct: 221 MDPVGVIVGLRGSRINPVSKELSGEKIDVIRWTENVEELIKKSLSPAPVTKVRLIPKDKR 280
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
EV VPKE+LSLAIG+ G NV+LA+++TGW ID+++EE+
Sbjct: 281 AEVAVPKEKLSLAIGKHGVNVKLANRITGWYIDVLSEEDFEK 322
>gi|194333210|ref|YP_002015070.1| transcription elongation factor NusA [Prosthecochloris aestuarii
DSM 271]
gi|194311028|gb|ACF45423.1| NusA antitermination factor [Prosthecochloris aestuarii DSM 271]
Length = 517
Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats.
Identities = 126/465 (27%), Positives = 227/465 (48%), Gaps = 45/465 (9%)
Query: 26 VVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVAR 85
+ ++ D IQK R Y + + INPE GD ++ L ++V+E++ + +IS+ R
Sbjct: 43 DIADLLKDIIQKQLRKDYDPEVEANIFINPERGDFEVYILKKIVDEIDIPSIEISIDEVR 102
Query: 86 DRDPSIDIGGVVSD-PLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIIS 143
D S+++G + P+ ++ R ++Q KQ + +KVR+ ER Y E +KVGE+I+
Sbjct: 103 QIDDSLEVGDYYEEGPINLEEYLTRKSIQIIKQSVQKKVRDLERQVVYEECLEKVGEVIA 162
Query: 144 GTVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGDRVKSYIY----------- 187
G V ++ VI + V+ + E I ++N R R+K Y+
Sbjct: 163 GEVYQIRPHEVIFSYNTSKDHRVELVLPKSEMIKKDNPRRTPRMKLYVKRIERERVKVKQ 222
Query: 188 ------DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+ + G +V++SRT +F+ KLF EVPEI +G++ +K ++R PG RAK+AV
Sbjct: 223 DDGSIVEKEKPDGGMKVIVSRTDDRFLYKLFESEVPEILDGLIVIKGIARVPGERAKVAV 282
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+ S IDPVGA VG RG R+Q++V EL +E ID++ ++ + F+ AL+PA + + +
Sbjct: 283 ESTSSRIDPVGASVGYRGKRIQSIVKELNNENIDVIYYTDEPQIFIARALQPAKIDPMTV 342
Query: 302 DEDVGR--IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
D+ V++ +Q+ AIG+ G N+ LA +LTG+ ID+ + D + +
Sbjct: 343 HADMKTRMARVMLKPDQIKYAIGKNGNNIHLAERLTGYEIDVYRDVIDKTLEDPNDIDII 402
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEI-------ASIEGFD---------E 403
+ + + + L+ G +++ I EI I+ +
Sbjct: 403 E---FREEFGDDMIYQLLDSGLDTAKKVLQAGIEEIEQALLGPTKIDEMSVFGKGRKTVK 459
Query: 404 ETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIK 448
+ + Y + I + + +++ +L I D+
Sbjct: 460 PRERRLTDEEKRYWKKIAENIYRTVKDQFNEADLQEINDEDNDAA 504
>gi|154175154|ref|YP_001408581.1| transcription elongation factor NusA [Campylobacter curvus 525.92]
gi|112803976|gb|EAU01320.1| transcription termination factor NusA [Campylobacter curvus 525.92]
Length = 366
Score = 227 bits (580), Expect = 3e-57, Method: Composition-based stats.
Identities = 107/340 (31%), Positives = 188/340 (55%), Gaps = 10/340 (2%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ I +++A EK + D V + ++ A+ +Y + V I+ ++ L++ + +
Sbjct: 4 ISDIIESIANEKGLQIDDVKERVIRALINTAKRVYSENYEYDVTID-ANKNLKLYQKILI 62
Query: 69 VEEV-----ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
V E+ ISLK A+ D +++G ++ L + GR A Q+ + + ++
Sbjct: 63 VANDDERLNEDNEHFISLKEAKKIDSGVEVGDELTYELSLDNLGRTAAQTLHKELEYHIQ 122
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRV 182
++ + ++ + VG+++ G+V RV+ N +++ ++ R I E + GD V
Sbjct: 123 RLVEEKIFQKYDEMVGQMVFGSVVRVDNDENTYIEIDELRAILPRKNRIKGEKFKIGDVV 182
Query: 183 KSYIYDVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
K+ I V ++ G +V LSRT P+F+ L EVPEI +G + ++ +R PG RAK+A+
Sbjct: 183 KAVIRKVFTDKNLGIRVELSRTSPKFLEALLKAEVPEIKDGGIIIQNSARIPGERAKVAL 242
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+ +IDPVGA VG +G R+ AV EL DE ID + ++ + A F+ A+ PAI++ V +
Sbjct: 243 ISTTPNIDPVGATVGTKGVRINAVSKELHDENIDAIEYASEPAIFISRAMAPAIISSVKI 302
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
D + V + EQ S AIG+ G N+RLAS LTG+ I++
Sbjct: 303 D--GNKAIVSLVGEQKSKAIGKNGINIRLASMLTGFEIEL 340
>gi|289810678|ref|ZP_06541307.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 236
Score = 227 bits (580), Expect = 3e-57, Method: Composition-based stats.
Identities = 93/235 (39%), Positives = 153/235 (65%), Gaps = 6/235 (2%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPG 179
ER +F+D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPG
Sbjct: 122 ERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPG 181
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234
DR++ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPG
Sbjct: 182 DRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPG 236
>gi|119356207|ref|YP_910851.1| transcription elongation factor NusA [Chlorobium phaeobacteroides
DSM 266]
gi|119353556|gb|ABL64427.1| NusA antitermination factor [Chlorobium phaeobacteroides DSM 266]
Length = 518
Score = 227 bits (579), Expect = 3e-57, Method: Composition-based stats.
Identities = 125/433 (28%), Positives = 219/433 (50%), Gaps = 32/433 (7%)
Query: 26 VVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVAR 85
+ ++ D IQK R Y + + INPE GD ++ L +VV EV+ + +IS+ R
Sbjct: 43 DIADLLKDIIQKQLRKDYDPEVEANIFINPERGDFEVYILKKVVSEVDLESIEISIDEVR 102
Query: 86 DRDPSIDIGGVVSD-PLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIIS 143
D S+++G + P+ D+ R ++Q KQ + +KVR+ ER Y E +KVGE+++
Sbjct: 103 KIDDSLELGDYYEEGPIKLEDYLSRKSIQIIKQSVQKKVRDLERLVVYEECLEKVGEVVA 162
Query: 144 GTVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGDRVKSYIYDVRR------- 191
G V +V VI + V+ R E I ++N R R+K Y+ + R
Sbjct: 163 GEVYQVRSNEVIFTYNTSKDHRVELVLPRAEMIKKDNPRRNPRMKLYVKRIEREKVKVRL 222
Query: 192 ----------EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
G +V++SR +F+ KLF EVPEI +G++ +K ++R PG RAK+AV
Sbjct: 223 DDGGVVERDKPDGGMKVIVSRIDDRFLYKLFEHEVPEILDGLIVIKGIARVPGERAKVAV 282
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+ + IDPVGA VG RG R+Q++V EL +E ID++ ++ + ++ AL+PA + + +
Sbjct: 283 ESTSARIDPVGASVGYRGKRIQSIVKELNNENIDVIYYTDEPQIYIARALQPAKIDPLTV 342
Query: 302 DED--VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
D + V++ +Q+ AIG+ G N+ LA +LTG+ ID+ + D +
Sbjct: 343 HADIKTRKARVMLKPDQIKYAIGKNGNNIHLAEKLTGYEIDVYRDVMDKSMEDPTDIDII 402
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASI---EGFDEETAVEIQGRAREY 416
+ + + + L+ G +++ + I + EE +GR R
Sbjct: 403 E---FREEFGDDMIYQLLDGGLDTAKKVLKAGVERIEEVLLGPSAPEEITFFSKGRTRSP 459
Query: 417 LEGIDITLQKKIR 429
++ + + ++ +
Sbjct: 460 IKPRERKVTEEEK 472
>gi|78189424|ref|YP_379762.1| transcription elongation factor NusA [Chlorobium chlorochromatii
CaD3]
gi|78171623|gb|ABB28719.1| NusA antitermination factor [Chlorobium chlorochromatii CaD3]
Length = 527
Score = 227 bits (579), Expect = 4e-57, Method: Composition-based stats.
Identities = 122/396 (30%), Positives = 210/396 (53%), Gaps = 29/396 (7%)
Query: 26 VVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVAR 85
+ ++ D IQK R Y + + INPE GD ++ L ++VE+V+ T +ISL+ R
Sbjct: 43 DIADLLKDIIQKQLRKDYDPEVEANIFINPERGDFEVYILRKIVEDVDIPTIEISLEDIR 102
Query: 86 DRDPSIDIGGVVSD-PLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIIS 143
D S+++G + P+ D+ R ++Q KQ + +KVR+ ER Y E +KVGE+I+
Sbjct: 103 KIDDSLEVGDYYEEGPIKLDDYLSRKSIQIIKQSVQKKVRDLERLIVYEECLEKVGEVIA 162
Query: 144 GTVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG--- 195
G V +V VI + V+ + E + ++N R R+K Y+ + RE+
Sbjct: 163 GEVYQVRSNEVIFTYNTSKDHRVELVLPKSEMMKKDNPRRMPRMKLYVKRIEREKNKIRM 222
Query: 196 --------------PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+V++SR +F+ KLF EVPEI +G++ +KAV+R PG RAK+AV
Sbjct: 223 DDGTVVEREKPDGGMKVIVSRVDDRFLYKLFEHEVPEILDGLIIIKAVARVPGERAKVAV 282
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-- 299
S+ + IDPVGA VG RG R+Q++V EL +E ID++ ++ + ++ A++PA + +
Sbjct: 283 ESTSARIDPVGATVGYRGKRIQSIVKELNNENIDVIYYADEPQIYISRAMQPAKIDPMTV 342
Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
+D + V++ +Q+ AIG+ G N+ LA +LTG+ ID+ + D +
Sbjct: 343 HVDIKTRKARVMLKPDQIKYAIGKNGNNIHLAEKLTGYEIDVYRDVMDKTTEDPTDIDII 402
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEI 395
+ + + + L+ G +++ + EI
Sbjct: 403 E---FREEFGDDMIYQLLDAGLDTAKKVLRAGLEEI 435
>gi|15605801|ref|NP_213178.1| transcription elongation factor NusA [Aquifex aeolicus VF5]
gi|2982967|gb|AAC06581.1| transcription termination NusA [Aquifex aeolicus VF5]
Length = 337
Score = 227 bits (578), Expect = 4e-57, Method: Composition-based stats.
Identities = 130/355 (36%), Positives = 201/355 (56%), Gaps = 25/355 (7%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+ +L ++ + VA E + VV + ++I A R ++ VE E I ++ +
Sbjct: 3 KAQLQKLIEQVATEHDLPERVVERALKNAIITAIRKEKKIRDELEVEFTDE--GIKVYVV 60
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
R + + P D R+A +AK+ +++ A
Sbjct: 61 R------------------RKGNKKFK----FPLDISPEDLNRLAAYAAKEEFYKELERA 98
Query: 126 ERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184
E++R YLEFK+ GEI+ G V++V E G+VIVDLG D ++ + E + +N + GD+VK+
Sbjct: 99 EQERGYLEFKELEGEIVYGIVRKVLENGDVIVDLGRIDAILPKREQLPTDNFKTGDKVKA 158
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
+ +VR+ + P ++LSRTHP F+ KL EVPEI G+V++KAV+R PG RAK+AV +
Sbjct: 159 LLLEVRKRRGEPVLILSRTHPNFLRKLLEQEVPEIKEGLVEIKAVARIPGERAKVAVEAK 218
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
+ +DPVG VG++G R+Q V EL EKID++ WS D A + AL PA K+ L
Sbjct: 219 EMKMDPVGIVVGLKGMRIQKVSEELGGEKIDVIRWSDDIAELIKRALAPAHPEKIKLFPY 278
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
R EV VP+E+LSLAIG++G NV+LAS+LTGW ID+++ ++ + E
Sbjct: 279 EKRAEVAVPEEELSLAIGKKGINVKLASKLTGWHIDVLSTKDFEKLEELRKKEDE 333
>gi|189499377|ref|YP_001958847.1| transcription elongation factor NusA [Chlorobium phaeobacteroides
BS1]
gi|189494818|gb|ACE03366.1| NusA antitermination factor [Chlorobium phaeobacteroides BS1]
Length = 521
Score = 227 bits (578), Expect = 4e-57, Method: Composition-based stats.
Identities = 118/409 (28%), Positives = 211/409 (51%), Gaps = 29/409 (7%)
Query: 26 VVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVAR 85
+ ++ D IQK R Y + + INPE GD ++ L VV+EV+ + +I L+
Sbjct: 43 DIADLLKDIIQKQLRKDYDPEVEANIFINPERGDFEVYILKTVVDEVDLPSIEIGLEEVS 102
Query: 86 DRDPSIDIGGVVSD-PLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIIS 143
D S+++G + + P+ D+ R ++Q KQ + +KVR+ E+ Y + +KVGE+++
Sbjct: 103 RIDESLELGDMYEEGPVNLEDYLTRKSIQIIKQSVQKKVRDMEKQVVYEDCLEKVGEVVA 162
Query: 144 GTVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGDRVKSYIY----------- 187
G V +V VI + V+ + E + ++N R R+K Y+
Sbjct: 163 GEVYQVRQNEVIFSYNTSKDHRVELVLPKSEMMKKDNPRRTPRMKLYVKRIEREKVKVRQ 222
Query: 188 ------DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+ + G +V++SR +F+ KLF EVPEI +G++ +K ++R PG RAK+AV
Sbjct: 223 DDGSIVEKEKPDGGMKVIVSRIDDRFLYKLFESEVPEILDGLIVIKGIARVPGERAKVAV 282
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+ S IDPVGA VG RG R+Q++V EL +E ID++ ++ D ++ AL+PA + + +
Sbjct: 283 ESTSSRIDPVGASVGYRGKRIQSIVKELNNENIDVINFTDDPQIYIARALQPAKIDPMTV 342
Query: 302 --DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
D + V++ EQ+ AIG+ G N+ LA +LTG+ +D+ + D + +
Sbjct: 343 HADMKTHKARVMLKPEQIKYAIGKNGNNIHLAERLTGYDVDVYRDVIDKSMEDPNDIDII 402
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408
+ + + + L+ G +++ +I +I + + E
Sbjct: 403 E---FREEFGDDMIYQLLDSGLDTAKKVLKAEIEDIEAALVGPPSKSEE 448
>gi|28493123|ref|NP_787284.1| transcription elongation factor NusA [Tropheryma whipplei str.
Twist]
gi|28572761|ref|NP_789541.1| transcription elongation factor NusA [Tropheryma whipplei TW08/27]
gi|28410894|emb|CAD67279.1| N utilization transcriptional termination/antitermination factor
[Tropheryma whipplei TW08/27]
gi|28476163|gb|AAO44253.1| N utilization substance protein A [Tropheryma whipplei str. Twist]
Length = 319
Score = 227 bits (578), Expect = 5e-57, Method: Composition-based stats.
Identities = 119/341 (34%), Positives = 178/341 (52%), Gaps = 33/341 (9%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSD-IRVEINPETGDISLFRLLE 67
L + AV E+ + D ++ + ++ A G +D ++ ++N +TG+I L R+
Sbjct: 7 LSVLRAVEREQRVAFDDLVRIAEQAVVMAYLRHTGLEDADLVKAKLNRKTGEIDL-RVKH 65
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
G + P F R+A +AK+VI K+R
Sbjct: 66 D-------------------------GDFI--PYKSDAFSRMAATAAKRVITSKMRTLSD 98
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNV-IVDLGN-SDGVIRRDETISRENLRPGDRVKSY 185
D + +K K+G ++SG + + N +V L ++ ++R +E I E G VK Y
Sbjct: 99 DSTFARYKTKIGTVLSGVISQSTSQNFRMVSLDRRTEAILRPEEQIPGEEYPHGKMVKVY 158
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ DV RG V +SRTHP + LF EVPEI +G V++ AVSR+ G R K++V S+
Sbjct: 159 VTDVTLGPRGSNVYVSRTHPGLINGLFLQEVPEIASGTVEIVAVSREAGHRTKVSVRSNS 218
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304
S VGACVG G RV+AV +E+ +EKIDI+ +S D +V NA+ PA V + D
Sbjct: 219 KSTSAVGACVGEYGCRVRAVTSEICNEKIDIISYSDDLGQYVANAISPATAADVFVLDSR 278
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345
+ V V KE+ SLAIG+ GQN RLA++LTG IDI +E
Sbjct: 279 QKVVRVYVSKEEYSLAIGKEGQNARLAARLTGAKIDIRIDE 319
>gi|39938634|ref|NP_950400.1| transcription elongation factor NusA [Onion yellows phytoplasma
OY-M]
gi|39721743|dbj|BAD04233.1| transcription terminator [Onion yellows phytoplasma OY-M]
Length = 357
Score = 226 bits (577), Expect = 6e-57, Method: Composition-based stats.
Identities = 105/358 (29%), Positives = 192/358 (53%), Gaps = 12/358 (3%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
M+S N ++ D +A E+ +D+D V+ A + + + S ++E+ + +I
Sbjct: 1 MISKN---FFKLLDKIAQERDLDKDQVIDAFAKGLISGCKKNHKVKS-CKIELKEDKSEI 56
Query: 61 SLFRLLEVVEEVEN------YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSA 114
L++ V +E + I+L+ A+ P IG V+ + P DF AV+
Sbjct: 57 ILYKQFLVADEATMSTINLKESTPITLEEAQQIKPHAKIGQVIDIKVDPKDFNLYAVKEL 116
Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISR 173
K +++ + +R+ Y FK + G++IS + ++L ++ + E S
Sbjct: 117 KNQFNEELTKKKRESIYNFFKQQEGKLISAKIISENDKFYNLELEKEITTLLPKKEIASN 176
Query: 174 ENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDP 233
++ G+R++ ++ +VR+ + P++ +S H +VK+ +PEI GIV++ V+R
Sbjct: 177 NEMQVGERIQVFLSEVRKTTKWPKIFVSCNHVGLVVKVLEENIPEIQEGIVKIAGVARIS 236
Query: 234 GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP 293
G R K+ + S D+ +D +G+C+G R +R++ V+ L+DEK+D+ VWS D + NAL+P
Sbjct: 237 GERTKIGLLSCDAQVDAIGSCIGERSNRIKNVIKILKDEKVDLFVWSDDPQELIANALKP 296
Query: 294 AIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350
A +VV+ D+ IVP +Q SLAIG+ G+NV+LA ++T W IDI T ++
Sbjct: 297 ASCLQVVIKDDINKYALAIVPDDQFSLAIGKLGKNVKLAVEVTKWNIDIKTLDQAQTE 354
>gi|193213433|ref|YP_001999386.1| transcription elongation factor NusA [Chlorobaculum parvum NCIB
8327]
gi|193086910|gb|ACF12186.1| NusA antitermination factor [Chlorobaculum parvum NCIB 8327]
Length = 521
Score = 226 bits (577), Expect = 6e-57, Method: Composition-based stats.
Identities = 130/473 (27%), Positives = 233/473 (49%), Gaps = 47/473 (9%)
Query: 26 VVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVAR 85
+ ++ + IQK R Y + + INPE GD ++ L ++VEEV+ T +I L R
Sbjct: 43 DIADLLKEIIQKQLRKDYDPEVEANIFINPERGDFEVYILKKIVEEVDLPTIEIGLDEVR 102
Query: 86 DRDPSIDIGGVVSD-PLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIIS 143
D S+++G + P+ DF R ++Q KQ + +KVR+ ER Y + +KVGE+++
Sbjct: 103 QIDDSLELGDYYEEGPIKLDDFLTRKSIQIIKQSVQKKVRDLERMAVYEDCLEKVGEVVA 162
Query: 144 GTVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGDRVKSYI------------ 186
G V +V VI + V+ + E + ++N R +K Y+
Sbjct: 163 GEVYQVRSNEVIFTYNTSKDHRVELVLPKSEMMKKDNPRRTPHMKLYVKRIERERVKVRN 222
Query: 187 -----YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+ + G +V++SR +F+ KLF EVPEI +G++ +K ++R PG RAK+AV
Sbjct: 223 DDGTVEEREKPDGGMKVIVSRVDDRFLYKLFESEVPEILDGLIVIKGIARVPGERAKVAV 282
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+ S IDPVGA VG RG R+Q++V EL +E ID++ ++ + F+ AL+PA + + +
Sbjct: 283 ESTSSRIDPVGATVGYRGKRIQSIVKELNNENIDVIYYTDEPQVFIARALQPAKIDPMTV 342
Query: 302 --DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
D + V++ +Q+ AIG+ G N+ LA +LTG+ ID+ + D + +
Sbjct: 343 HADMKTRKARVMLKPDQIKYAIGKNGNNIHLAEKLTGYEIDVYRDVIDKSLEDPNDIDII 402
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV------------ 407
+ + + + L+ G +++ + +I +++
Sbjct: 403 E---FREEFGDDMIYQLLDGGLDTAKKILKGGVEKIEEALLGTQKSEELFVFNKTRKPVK 459
Query: 408 ----EIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGI 456
I + Y + I T+ + +RE E+L ++ +D + +L +GI
Sbjct: 460 PRERRITDDEKRYWKKIAETIYRTVREQFNDEDLKAL--LDDSHERSLMGDGI 510
>gi|78187634|ref|YP_375677.1| transcription elongation factor NusA [Chlorobium luteolum DSM 273]
gi|78167536|gb|ABB24634.1| NusA antitermination factor [Chlorobium luteolum DSM 273]
Length = 553
Score = 226 bits (576), Expect = 7e-57, Method: Composition-based stats.
Identities = 121/398 (30%), Positives = 206/398 (51%), Gaps = 29/398 (7%)
Query: 26 VVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVAR 85
+ ++ D IQK R Y + + INPE GD ++ L ++VEEV+ +ISL+ R
Sbjct: 43 DIADLLKDIIQKQLRKDYDPEVEANIFINPERGDFEVYILKKIVEEVDIAPIEISLEEIR 102
Query: 86 DRDPSIDIGGVVSD-PLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIIS 143
D S+++G + P+ D+ R ++Q KQ + +KVR+ ER Y E +KVGE+I+
Sbjct: 103 RIDESLEVGDYYEEGPIKLDDYLTRKSIQIIKQSVQKKVRDLERMVVYEECLEKVGEVIA 162
Query: 144 GTVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGDRVKSY------------- 185
V +V VI + V+ + E + ++N R R+K Y
Sbjct: 163 AEVYQVRSNEVIFTYNTSKDHRVELVLPKSEMMKKDNPRRTPRMKLYVKNIERERVKVRL 222
Query: 186 ----IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+ + + G +V++SR +F+ KLF EVPEI +G++ +K ++R PG RAK+AV
Sbjct: 223 DDGTMEEKEKADGGMKVIVSRVDDRFLYKLFEQEVPEILDGLIVIKGIARVPGERAKVAV 282
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+ + IDPVGA VG RG R+Q++V EL +E ID++ +S + ++ AL+PA + + +
Sbjct: 283 ESTSARIDPVGATVGYRGKRIQSIVKELNNENIDVIYYSDEPQVYISRALQPAKIDPLTV 342
Query: 302 --DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
D + V++ +Q+ AIG+ G N+ LA +LTG+ ID+ + I+R +
Sbjct: 343 HADMKTRKARVMLKPDQIKYAIGKNGNNIHLAEKLTGYEIDVYRDV---IDRSMEDPTDI 399
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIAS 397
+ + + L+ G ++ + EI
Sbjct: 400 DIIEFREEFGDDMIYQLLDAGLDTAKKALKAGVEEIEQ 437
>gi|21673079|ref|NP_661144.1| transcription elongation factor NusA [Chlorobium tepidum TLS]
gi|21646150|gb|AAM71486.1| N utilization substance protein A, putative [Chlorobium tepidum
TLS]
Length = 521
Score = 226 bits (576), Expect = 9e-57, Method: Composition-based stats.
Identities = 130/473 (27%), Positives = 234/473 (49%), Gaps = 47/473 (9%)
Query: 26 VVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVAR 85
+ ++ + IQK R Y + + INPE GD ++ L ++V+EV+ T +I L R
Sbjct: 43 DIADLLKEIIQKQLRKDYDPEVESNIFINPERGDFEVYILKKIVKEVDLPTIEIGLDEVR 102
Query: 86 DRDPSIDIGGVVSD-PLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIIS 143
D S+++G + P+ D+ R ++Q KQ + +KVR+ ER Y E +KVGE+++
Sbjct: 103 QIDDSLELGDYYEEGPIKLDDYLTRKSIQIIKQSVQKKVRDLERLAVYEECLEKVGEVVA 162
Query: 144 GTVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGDRVKSYI------------ 186
G V +V VI + V+ + E + ++N R R+K Y+
Sbjct: 163 GEVYQVRPNEVIFTYNTSKDHRVELVLPKSEMMKKDNPRRTPRMKLYVKRIEREKVKVRN 222
Query: 187 -----YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+ + G +V++SR +F+ KLF EVPEI +G++ +K ++R PG RAK+AV
Sbjct: 223 DDGTVEEREKPDGGMKVIVSRVDDRFLYKLFESEVPEILDGLIVIKGIARVPGERAKVAV 282
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+ S IDPVGA VG RG R+Q++V EL +E ID++ ++ + F+ AL+PA + + +
Sbjct: 283 ESTSSRIDPVGATVGYRGKRIQSIVKELNNENIDVIYYTDEPQVFIARALQPAKIDPMTV 342
Query: 302 --DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
D + V++ +Q+ AIG+ G N+ LA +LTG+ ID+ + D + +
Sbjct: 343 HADMKTRKARVMLKPDQIKYAIGKNGNNIHLAEKLTGYEIDVYRDVIDKSLEDPNDIDII 402
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV------------ 407
+ + + + L+ G +++ + +I +++
Sbjct: 403 E---FREEFGDDMIYQLLDGGLDTAKKILKGGVEKIEEALLGTQKSEELFVFNKTRKPVK 459
Query: 408 ----EIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGI 456
I + Y + I T+ + +RE E+L ++ +D + +L +GI
Sbjct: 460 PKERRITDDEKRYWKKIAETIYRTVREQFNDEDLKAL--LDDSHERSLKGDGI 510
>gi|189345843|ref|YP_001942372.1| transcription elongation factor NusA [Chlorobium limicola DSM 245]
gi|189339990|gb|ACD89393.1| NusA antitermination factor [Chlorobium limicola DSM 245]
Length = 513
Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats.
Identities = 119/398 (29%), Positives = 207/398 (52%), Gaps = 29/398 (7%)
Query: 26 VVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVAR 85
+ ++ D IQK R Y + + INPE GD ++ L ++V+EV+ +ISL R
Sbjct: 43 DIADLLKDIIQKQLRKDYDPEVESNIFINPERGDFEVYILRKIVQEVDIPAIEISLDEVR 102
Query: 86 DRDPSIDIGGVVSD-PLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIIS 143
D S+D+G + P+ D+ R ++Q KQ + +KVR+ ER Y E +KVGE+++
Sbjct: 103 KIDESLDLGDFYEEGPIRLEDYLTRKSIQIIKQSVQKKVRDLERLVVYEECLEKVGEVVA 162
Query: 144 GTVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGDRVKSYIY----------- 187
G V ++ VI + V+ + E + ++N R R+K Y+
Sbjct: 163 GEVYQIRSNEVIFTYNTSKDHRVELVLPKSEMMKKDNPRRTPRMKLYVKRIEREKAKVRL 222
Query: 188 ------DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+ + G +V++SR +F+ KLF EVPEI +G++ +K ++R PG RAK++V
Sbjct: 223 DDGGVVEKEKPDGGMKVIVSRVDDRFLYKLFEHEVPEILDGLIVIKGIARVPGERAKVSV 282
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+ + IDPVGA VG RG R+Q++V EL +E ID++ ++ + ++ AL+PA + + +
Sbjct: 283 ESTSARIDPVGASVGYRGKRIQSIVKELNNENIDVIYYTDEPQIYIARALQPAKIDPLTV 342
Query: 302 DED--VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
D + V++ +Q+ AIG+ G N+ LA +LTG+ ID+ + D +
Sbjct: 343 HADIKTRKARVMLKPDQIKYAIGKNGNNIHLAEKLTGYEIDVYRDVIDKSLEDPTDIDII 402
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIAS 397
+ + + + L+ GF +++ I EI
Sbjct: 403 E---FREEFGDDMLYQLLDAGFDTAKKVLKAGIEEIEQ 437
>gi|294660246|ref|NP_852895.2| transcription elongation factor NusA [Mycoplasma gallisepticum str.
R(low)]
gi|284811901|gb|AAP56463.2| transcription elongation factor NusA [Mycoplasma gallisepticum str.
R(low)]
gi|284930355|gb|ADC30294.1| transcription elongation factor NusA [Mycoplasma gallisepticum str.
R(high)]
Length = 624
Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats.
Identities = 112/440 (25%), Positives = 201/440 (45%), Gaps = 27/440 (6%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
+S + L+ VA K+I + + +++ D+I +A I V I+ + G +
Sbjct: 1 MSVDNKSFLEAIQTVAETKNISKKEISTILKDAIIRACAKE-DPDQRIDVMIDFDMGLLK 59
Query: 62 LFRLLEVV-----EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116
+F+L +V+ EE + +I LK A +P+I +G L DF RV + Q
Sbjct: 60 IFKLYKVIDDSVSEEEFDEINEIHLKDALATNPTIKVGDDFLKSLSIGDFSRVVATNISQ 119
Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN--VIVDLGNSDGVIRRDETISRE 174
QK+ E + E+ K+ +I+ GTV++ E ++V+LG + + + E
Sbjct: 120 YFRQKLSELVNKQAVSEWTPKLNKIVRGTVEKDENNPNVLLVNLGGIYAYYYKRDWVPNE 179
Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234
L+ + ++ + + +++SR+ ++ + +PEI GIV++KA+ R G
Sbjct: 180 ELQNDVEYDFVLTQIKEQSKSWPLIVSRSDALYVKHVLTENIPEIKEGIVEIKAIQRVAG 239
Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTEL---------RDEKIDIVVWSPDSAT 285
+ K+AV S++ IDPV +G G R++++ L +E ID+ W+ D
Sbjct: 240 QKTKVAVLSNNPDIDPVTLILGDGGIRIKSIAANLIEHSSGVKVSNEVIDVFHWNDDVFK 299
Query: 286 FVINALRPAIVTKVVLDED---VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342
+ NA P + V + ED +++IV + L IGR G NVRL S +TGW+ID
Sbjct: 300 LIANACYPVDIIGVDVLEDSERDKSVDIIVEDQYLPFLIGRAGINVRLLSYMTGWSIDFK 359
Query: 343 TEEEDSINRQKDFNERTQFFMQAINVDEI-----IAHLLVAEGFADVEELACVKISEIAS 397
++ + A+ VD+ + + F VE L I+ +
Sbjct: 360 SQSAAIEDNINVVPLNYSPVDNAVLVDQFKRNSRRTKIASKQSFKKVETLQTPLIAYSTA 419
Query: 398 IEGFDEETAV--EIQGRARE 415
+EG D+ +I A+E
Sbjct: 420 VEGDDDIKVDFQKIYEEAKE 439
>gi|57168596|ref|ZP_00367729.1| transcription termination factor NusA [Campylobacter coli RM2228]
gi|305433015|ref|ZP_07402171.1| transcription termination factor NusA [Campylobacter coli JV20]
gi|57020101|gb|EAL56778.1| transcription termination factor NusA [Campylobacter coli RM2228]
gi|304443716|gb|EFM36373.1| transcription termination factor NusA [Campylobacter coli JV20]
Length = 362
Score = 224 bits (572), Expect = 2e-56, Method: Composition-based stats.
Identities = 105/366 (28%), Positives = 187/366 (51%), Gaps = 13/366 (3%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ I +++A EK++D + V + ++ A+ +YG D V + + ++L++ + V
Sbjct: 4 IADIIESIANEKNLDIESVKEKVIIALINTAKRIYGQEYDFFV--DRKN--LNLYQKITV 59
Query: 69 VEEV-----ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
V + EN I A+ P ++IG ++ + GR AV + + ++
Sbjct: 60 VADNDERLNENKESYIEFSKAKKEAPDVEIGDELTYECSLENLGRTAVNILHKELEYHIQ 119
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRV 182
+ + ++K+KVG+++ G V R++ N +++ + R I E + GD V
Sbjct: 120 KLLEQTIFEKYKNKVGQMVFGNVVRIDNEENTYIEIDELRAFLPRKNRIKGEKFKVGDVV 179
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
K+ I V +G ++ LSRT P+F+ L EVPEI +G V V +R PG RAK+ +
Sbjct: 180 KAVIRRVYT-DKGIKMELSRTSPKFLECLLEAEVPEIKDGYVSVVKCARIPGERAKIILQ 238
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
++ ++IDPVGA VG++G R+ AV EL +E ID + +S + + AL PAIV+ V +
Sbjct: 239 ANGANIDPVGATVGVKGVRINAVSKELHNENIDCIEFSNEPEILIARALAPAIVSSVKI- 297
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
+ + V + EQ S AIG+ G N+RLA L+G+ I++ + + E +
Sbjct: 298 -ENEKAIVTLNSEQKSKAIGKSGINIRLAGMLSGYEIELNEVNARTTSNTLSNEEALKNL 356
Query: 363 MQAINV 368
+
Sbjct: 357 QDLFKI 362
>gi|332203719|gb|EGJ17786.1| transcription termination factor NusA [Streptococcus pneumoniae
GA47368]
Length = 302
Score = 224 bits (572), Expect = 2e-56, Method: Composition-based stats.
Identities = 106/287 (36%), Positives = 167/287 (58%), Gaps = 15/287 (5%)
Query: 81 LKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGE 140
+K A + + ++G + P +FGRVA QSAKQ I++K+R+ R Y +K+ E
Sbjct: 1 MKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTRAITYNTYKEHEQE 60
Query: 141 IISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLL 200
I+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y V RG V +
Sbjct: 61 IMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVYKVEDNPRGVNVFV 120
Query: 201 SRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGS 260
SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + ++D +G VG G+
Sbjct: 121 SRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPNVDAIGTIVGRGGA 180
Query: 261 RVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRPAIVTKVVLDE-DV 305
++ + ++ E ID++ W D A F+ NA+ PA V +V+ DE D
Sbjct: 181 NIKKITSKFHPARYDAKNDRMVPIEENIDVIEWVADPAEFIYNAIAPAEVDQVIFDENDS 240
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E
Sbjct: 241 KRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMED 287
>gi|110597607|ref|ZP_01385892.1| transcription termination factor NusA [Chlorobium ferrooxidans DSM
13031]
gi|110340727|gb|EAT59204.1| transcription termination factor NusA [Chlorobium ferrooxidans DSM
13031]
Length = 516
Score = 224 bits (572), Expect = 2e-56, Method: Composition-based stats.
Identities = 122/398 (30%), Positives = 210/398 (52%), Gaps = 29/398 (7%)
Query: 26 VVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVAR 85
+ ++ D IQK R Y + + INPE GD ++ L ++V+EV+ + +ISL R
Sbjct: 43 DIADLLKDIIQKQLRKDYDPEVESNIFINPERGDFEVYILKKIVKEVDIESIEISLDEVR 102
Query: 86 DRDPSIDIGGVVSD-PLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIIS 143
D S+DIG + P+ D+ R ++Q KQ + +KVR+ ER Y E +KVGE+++
Sbjct: 103 KIDDSLDIGDYYEEGPIKLDDYLSRKSIQIIKQSVQKKVRDLERLVVYEECLEKVGEVVA 162
Query: 144 GTVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGDRVKSYIYDVRRE------ 192
G V ++ VI + V+ + E + ++N R R+K YI + RE
Sbjct: 163 GEVYQIRSNEVIFTYNTSKDHRVELVLPKSEMMKKDNPRRTPRMKLYIKRIEREKVKTKL 222
Query: 193 -----------QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
G +V++SR +F+ KLF EVPEI +G++ +KA++R PG RAK+AV
Sbjct: 223 DDGNVVEREKADGGMKVIVSRVDDRFLYKLFEHEVPEILDGLIVIKAIARVPGERAKVAV 282
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+ + IDPVGA VG RG R+Q++V EL +E ID++ ++ + ++ A++PA + + +
Sbjct: 283 ESTSARIDPVGATVGYRGKRIQSIVKELNNENIDVIYYTDEPQIYISRAMQPAKIDPLTV 342
Query: 302 --DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
D + V++ +Q+ AIG+ G N+ LA +LTG+ ID+ + D +
Sbjct: 343 HADPKTRKARVMLKPDQIKYAIGKNGNNIHLAEKLTGYEIDVYRDVIDKSMEDPTDIDII 402
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIAS 397
+ + + + L+ G +++ + EI +
Sbjct: 403 E---FREEFGDDMIYQLLDGGLDTAKKVLKAGVEEIEN 437
>gi|254992770|ref|ZP_05274960.1| transcription elongation factor NusA [Listeria monocytogenes FSL
J2-064]
Length = 251
Score = 224 bits (571), Expect = 3e-56, Method: Composition-based stats.
Identities = 107/250 (42%), Positives = 161/250 (64%)
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y
Sbjct: 1 ERGIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVY 60
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++
Sbjct: 61 LTKVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTAN 120
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
+DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E
Sbjct: 121 EEVDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEAD 180
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + N+ ++
Sbjct: 181 QATTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETVATELGIYPRNDVEAPEVED 240
Query: 366 INVDEIIAHL 375
+
Sbjct: 241 AESETYTEDE 250
>gi|315452942|ref|YP_004073212.1| transcription termination factor NusA [Helicobacter felis ATCC
49179]
gi|315131994|emb|CBY82622.1| transcription termination factor NusA [Helicobacter felis ATCC
49179]
Length = 376
Score = 224 bits (570), Expect = 4e-56, Method: Composition-based stats.
Identities = 104/344 (30%), Positives = 182/344 (52%), Gaps = 14/344 (4%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+L I + +AYEK + ++V V+ +SI K A++ ++ I+ D +L ++EV
Sbjct: 4 ILDIVELIAYEKGLSLEMVKEVVKNSILKVAKNTIDPQANF--MIDDSNKDFTLLHVVEV 61
Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+ V + T ++L DPS+ ++ + D R AV + + + ++
Sbjct: 62 CADDDPRLVADPTNTLALTEVLKDDPSLKPNDLLHYEISLKDMKRGAVNALFKDLEFNIQ 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDRV 182
+ D+ + ++K + I+ G V ++ N V++ V+ I E+ + GD +
Sbjct: 122 RSLEDQYFQKYKGMLNTIVRGVVLDIDKNQNTFVEIEGVQAVLALRNRIKGESFKVGDTL 181
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
++ + V ++G + LSRT P+F+ L H+EVPEI + +++ ++R PG RAKLA+
Sbjct: 182 RAILKSVHFSKQGLVLELSRTTPKFLEALLHLEVPEIADKEIEIMGIARIPGDRAKLALR 241
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL- 301
S + IDP+GA VG++G R+ A+ EL +E ID V ++ ++ NAL PA + K+ L
Sbjct: 242 SHNVHIDPIGATVGVKGIRINAISKELCNESIDCVHYNEVPEIYIANALSPANIVKIELS 301
Query: 302 -----DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340
D+ V + +Q S AIG+ G NVRLA LTG+ ID
Sbjct: 302 QKTLEDKIQKNALVTLQADQKSKAIGKSGVNVRLACMLTGYEID 345
>gi|78777942|ref|YP_394257.1| transcription elongation factor NusA [Sulfurimonas denitrificans
DSM 1251]
gi|78498482|gb|ABB45022.1| NusA antitermination factor [Sulfurimonas denitrificans DSM 1251]
Length = 380
Score = 223 bits (569), Expect = 5e-56, Method: Composition-based stats.
Identities = 104/367 (28%), Positives = 185/367 (50%), Gaps = 13/367 (3%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+L I +A+A EK + D V + + + A+ + + IN +T I + + + V
Sbjct: 4 ILDIVEAIANEKGLKSDKVKEALKAAFIQTAKRIINSKFAFEAVINTQTKTIDIIQTITV 63
Query: 69 VEEVENYTCQ-------ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
V + + IS+ AR+ D +++ + P ++GR A + I
Sbjct: 64 VSDSDERLKDEEIAPAYISITEAREYDDQVELDDQLQIPHDLEEYGRTAASQLHREIEYH 123
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGN-VIVDLGNSDGVIRRDETISRENLRPGD 180
++ D + ++K K+G +++G V RV+ N +++ V+ I E + GD
Sbjct: 124 IQRVVEDEIFNKYKSKIGSLVNGRVTRVDNQNSTYIEIDEIRAVLPIKNRIKGEIFKVGD 183
Query: 181 RVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
+K+ + V + G Q+ LSRT P+F+ +L +EVPEI +G V V+ +R PG RAK+
Sbjct: 184 HLKAVVRRVDMNKENGIQIELSRTSPKFLEELLALEVPEISDGTVIVERSARIPGERAKV 243
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
A+FS+ +D VGA VG++G R+ AV EL E ID + ++ F+ + PAI++ V
Sbjct: 244 ALFSTHPQVDAVGATVGVKGVRINAVSQELIGENIDCIEYTTIPELFISRIMSPAIISNV 303
Query: 300 VLDEDVG----RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355
+ +D + + +P +Q S AIG+ G N+RLAS L+G I+++ +
Sbjct: 304 EILKDENGEAQKAIITLPTDQKSKAIGKNGINIRLASMLSGLNIELVESDVKVAQMSDMQ 363
Query: 356 NERTQFF 362
+ + Q
Sbjct: 364 DNKEQKE 370
>gi|86151767|ref|ZP_01069981.1| transcription termination factor NusA [Campylobacter jejuni subsp.
jejuni 260.94]
gi|315124006|ref|YP_004066010.1| transcription termination factor NusA [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
gi|85841396|gb|EAQ58644.1| transcription termination factor NusA [Campylobacter jejuni subsp.
jejuni 260.94]
gi|315017728|gb|ADT65821.1| transcription termination factor NusA [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
Length = 362
Score = 223 bits (568), Expect = 7e-56, Method: Composition-based stats.
Identities = 106/366 (28%), Positives = 193/366 (52%), Gaps = 13/366 (3%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ I +++A EK+++ + V +A ++ A+ +YG + V +P+ ++L++ + +
Sbjct: 4 IADIIESIANEKNLNLENVREKVATALINTAKRIYGQEYEFFV--DPKN--LNLYQKITI 59
Query: 69 VEEVEN-----YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
V + + I+L A+ P ++IG ++ + GR AV + + + ++
Sbjct: 60 VADNDERLQNKSESFIALSKAKSEAPDVEIGDELTYECSLENLGRTAVNTLHKELEYHIQ 119
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRV 182
+ + ++K+KVG+++ GTV RV+ N +++ + R I E + GD V
Sbjct: 120 KLLEQTIFEKYKNKVGQMVFGTVVRVDNEENTFIEIDELRAFLPRKNRIKGEKFKIGDVV 179
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
K+ I V +G ++ LSRT P+F+ L EVPEI +G V + +R PG RAK+ +
Sbjct: 180 KAVIRRVYT-DKGIKIELSRTSPKFLECLLEAEVPEIKDGYVNIIGCARIPGERAKIILQ 238
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
++ ++IDPVGA VG++G R+ AV EL +E ID + ++ +S + AL PAIV V +
Sbjct: 239 ANGANIDPVGATVGVKGVRINAVSKELHNENIDCIEFTNESEILISRALAPAIVNSVKI- 297
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
+ + V + EQ S AIG+ G N+RLAS L+G+ I++ +N E +
Sbjct: 298 -EDKKAIVSLNSEQKSKAIGKNGINIRLASMLSGYEIELNELSSSQLNNTISNEEAMKNL 356
Query: 363 MQAINV 368
+
Sbjct: 357 QDLFKI 362
>gi|86153795|ref|ZP_01071998.1| transcription termination factor NusA [Campylobacter jejuni subsp.
jejuni HB93-13]
gi|85842756|gb|EAQ59968.1| transcription termination factor NusA [Campylobacter jejuni subsp.
jejuni HB93-13]
Length = 362
Score = 223 bits (568), Expect = 7e-56, Method: Composition-based stats.
Identities = 105/366 (28%), Positives = 193/366 (52%), Gaps = 13/366 (3%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ I +++A EK+++ + V +A ++ A+ +YG + V +P+ ++L++ + +
Sbjct: 4 IADIIESIANEKNLNLENVREKVATALINTAKRIYGQEYEFFV--DPKN--LNLYQKITI 59
Query: 69 VEEVEN-----YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
V + + I+L A+ P ++IG ++ + GR AV + + + ++
Sbjct: 60 VADNDERLQNKSESFIALSKAKSEAPDVEIGDELTYECSLENLGRTAVNTLHKELEYHIQ 119
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRV 182
+ + ++K+KVG+++ GTV RV+ N +++ + R I E + GD V
Sbjct: 120 KLLEQTIFEKYKNKVGQMVFGTVVRVDNEENTFIEIDELRAFLPRKNRIKGEKFKIGDVV 179
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
K+ I V +G ++ LSRT P+F+ L EVPEI +G V + +R PG RAK+ +
Sbjct: 180 KAVIRRVYT-DKGIKIELSRTSPKFLECLLEAEVPEIKDGYVNIIGCARIPGERAKIILQ 238
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
++ ++IDPVGA VG++G R+ AV EL +E ID + ++ +S + AL P+IV V +
Sbjct: 239 ANGANIDPVGATVGVKGVRINAVSKELHNENIDCIEFTNESEILISRALAPSIVNSVKI- 297
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
+ + V + EQ S AIG+ G N+RLAS L+G+ I++ +N E +
Sbjct: 298 -EDKKAIVSLNSEQKSKAIGKNGINIRLASMLSGYEIELNELSSSQLNNAISNEEAMKNL 356
Query: 363 MQAINV 368
+
Sbjct: 357 QDLFKI 362
>gi|309804431|ref|ZP_07698499.1| transcription termination factor NusA [Lactobacillus iners LactinV
09V1-c]
gi|308166244|gb|EFO68459.1| transcription termination factor NusA [Lactobacillus iners LactinV
09V1-c]
Length = 248
Score = 222 bits (567), Expect = 8e-56, Method: Composition-based stats.
Identities = 102/232 (43%), Positives = 148/232 (63%), Gaps = 2/232 (0%)
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178
+Q++REAER E+ E+I+GTV+RV+ V + +GN + V+ ++ + E +P
Sbjct: 1 MQRLREAERAHIIEEYSQYQNELITGTVERVDNRFVYIKIGNVEAVMPHNDQMPGEVYKP 60
Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238
DR+K + V + +G Q+ +SRT P + +LF EVPE+YNG V++ +++R+ G R K
Sbjct: 61 QDRIKVLVTKVGSDAKGTQITVSRTAPGLVKRLFEQEVPEVYNGTVEIISIAREAGDRTK 120
Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298
+AV SSD +IDPVG VG +GSRVQ +V EL E ID+V + D + ++ NAL PA V
Sbjct: 121 IAVKSSDPNIDPVGTLVGPKGSRVQNIVNELSGENIDVVKYEEDPSDYIANALNPAEVIA 180
Query: 299 VVLDE--DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
V E D VIVP QLSLAIG++GQNVRLA++LT + IDI E +
Sbjct: 181 VQFGEANDDKSALVIVPDYQLSLAIGKKGQNVRLAARLTEYKIDIKPESQVE 232
>gi|153951003|ref|YP_001398503.1| transcription elongation factor NusA [Campylobacter jejuni subsp.
doylei 269.97]
gi|152938449|gb|ABS43190.1| transcription termination factor NusA [Campylobacter jejuni subsp.
doylei 269.97]
Length = 362
Score = 222 bits (567), Expect = 9e-56, Method: Composition-based stats.
Identities = 106/366 (28%), Positives = 193/366 (52%), Gaps = 13/366 (3%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ I +++A EK+++ + V +A ++ A+ +YG + V +P+ ++L++ + +
Sbjct: 4 IADIIESIANEKNLNLENVREKVATALINTAKRIYGQEYEFFV--DPKN--LNLYQKITI 59
Query: 69 VEEVEN-----YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
V + + I+L A+ P ++IG ++ + GR AV + + + ++
Sbjct: 60 VADNDERLQNKSESFIALSKAKVEAPDVEIGDELTYECSLENLGRTAVNTLHKELEYHIQ 119
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRV 182
+ + ++K+KVG+++ GTV RV+ N +++ + R I E + GD V
Sbjct: 120 KLLEQTIFEKYKNKVGQMVFGTVVRVDNEENTFIEIDELRAFLPRKNRIKGEKFKIGDVV 179
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
K+ I V +G ++ LSRT P+F+ L EVPEI +G V + +R PG RAK+ +
Sbjct: 180 KAVIRRVYT-DKGIKIELSRTSPKFLECLLEAEVPEIKDGYVNIIGCARIPGERAKIILQ 238
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
++ ++IDPVGA VG++G R+ AV EL +E ID + ++ +S + AL PAIV V +
Sbjct: 239 ANGANIDPVGATVGVKGVRINAVSKELHNENIDCIEFTNESEILISRALAPAIVNSVKI- 297
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
+ + V + EQ S AIG+ G N+RLAS L+G+ I++ +N E +
Sbjct: 298 -EDKKAIVNLNSEQKSKAIGKNGINIRLASMLSGYEIELNELSSSHLNNAISNEEAMKNL 356
Query: 363 MQAINV 368
+
Sbjct: 357 QDLFKI 362
>gi|57237514|ref|YP_178528.1| transcription elongation factor NusA [Campylobacter jejuni RM1221]
gi|205355336|ref|ZP_03222107.1| transcription termination factor [Campylobacter jejuni subsp.
jejuni CG8421]
gi|283955882|ref|ZP_06373372.1| transcription termination factor NusA [Campylobacter jejuni subsp.
jejuni 1336]
gi|57166318|gb|AAW35097.1| transcription termination factor NusA [Campylobacter jejuni RM1221]
gi|205346570|gb|EDZ33202.1| transcription termination factor [Campylobacter jejuni subsp.
jejuni CG8421]
gi|283792542|gb|EFC31321.1| transcription termination factor NusA [Campylobacter jejuni subsp.
jejuni 1336]
gi|315057880|gb|ADT72209.1| Transcription termination protein NusA [Campylobacter jejuni subsp.
jejuni S3]
Length = 362
Score = 222 bits (567), Expect = 9e-56, Method: Composition-based stats.
Identities = 106/366 (28%), Positives = 193/366 (52%), Gaps = 13/366 (3%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ I +++A EK+++ + V +A ++ A+ +YG + V +P+ ++L++ + +
Sbjct: 4 IADIIESIANEKNLNLENVREKVATALINTAKRIYGQEYEFFV--DPKN--LNLYQKITI 59
Query: 69 VEEVEN-----YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
V + + I+L A+ P ++IG ++ + GR AV + + + ++
Sbjct: 60 VADNDERLQNKSESFIALSKAKSEAPDVEIGDELTYECSLENLGRTAVNTLHKELEYHIQ 119
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRV 182
+ + ++K+KVG+++ GTV RV+ N +++ + R I E + GD V
Sbjct: 120 KLLEQTIFEKYKNKVGQMVFGTVVRVDNEENTFIEIDELRAFLPRKNRIKGEKFKIGDVV 179
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
K+ I V +G ++ LSRT P+F+ L EVPEI +G V + +R PG RAK+ +
Sbjct: 180 KAVIRRVYT-DKGIKIELSRTSPKFLECLLEAEVPEIKDGYVNIIGCARIPGERAKIILQ 238
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
++ ++IDPVGA VG++G R+ AV EL +E ID + ++ +S + AL PAIV V +
Sbjct: 239 ANGANIDPVGATVGVKGVRINAVSKELHNENIDCIEFTNESEILISRALAPAIVNSVKI- 297
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
+ + V + EQ S AIG+ G N+RLAS L+G+ I++ +N E +
Sbjct: 298 -EDKKAIVSLNSEQKSKAIGKNGINIRLASMLSGYEIELNELSSSQLNNAISNEEAMKNL 356
Query: 363 MQAINV 368
+
Sbjct: 357 QDLFKI 362
>gi|86149201|ref|ZP_01067433.1| transcription termination factor NusA [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|88596851|ref|ZP_01100087.1| transcription termination factor NusA [Campylobacter jejuni subsp.
jejuni 84-25]
gi|121612185|ref|YP_001000167.1| transcription elongation factor NusA [Campylobacter jejuni subsp.
jejuni 81-176]
gi|167005125|ref|ZP_02270883.1| transcription elongation factor NusA [Campylobacter jejuni subsp.
jejuni 81-176]
gi|218562115|ref|YP_002343894.1| transcription elongation factor NusA [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|85840559|gb|EAQ57816.1| transcription termination factor NusA [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|87250165|gb|EAQ73123.1| transcription termination factor NusA [Campylobacter jejuni subsp.
jejuni 81-176]
gi|88190540|gb|EAQ94513.1| transcription termination factor NusA [Campylobacter jejuni subsp.
jejuni 84-25]
gi|112359821|emb|CAL34608.1| transcription termination factor [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|284925727|gb|ADC28079.1| transcription elongation factor NusA [Campylobacter jejuni subsp.
jejuni IA3902]
gi|315928212|gb|EFV07529.1| transcription termination factor NusA [Campylobacter jejuni subsp.
jejuni DFVF1099]
gi|315930003|gb|EFV09146.1| transcription termination factor NusA [Campylobacter jejuni subsp.
jejuni 305]
Length = 362
Score = 222 bits (567), Expect = 9e-56, Method: Composition-based stats.
Identities = 106/366 (28%), Positives = 193/366 (52%), Gaps = 13/366 (3%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ I +++A EK+++ + V +A ++ A+ +YG + V +P+ ++L++ + +
Sbjct: 4 IADIIESIANEKNLNLENVREKVATALINTAKRIYGQEYEFFV--DPKN--LNLYQKITI 59
Query: 69 VEEVEN-----YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
V + + I+L A+ P ++IG ++ + GR AV + + + ++
Sbjct: 60 VADNDERLQNKSESFIALSKAKSEAPDVEIGDELTYECSLENLGRTAVNTLHKELEYHIQ 119
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRV 182
+ + ++K+KVG+++ GTV RV+ N +++ + R I E + GD V
Sbjct: 120 KLLEQTIFEKYKNKVGQMVFGTVVRVDNEENTFIEIDELRAFLPRKNRIKGEKFKIGDVV 179
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
K+ I V +G ++ LSRT P+F+ L EVPEI +G V + +R PG RAK+ +
Sbjct: 180 KAVIRRVYT-DKGIKIELSRTSPKFLECLLEAEVPEIKDGYVNIIGCARIPGERAKIILQ 238
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
++ ++IDPVGA VG++G R+ AV EL +E ID + ++ +S + AL PAIV V +
Sbjct: 239 ANGTNIDPVGATVGVKGVRINAVSKELHNENIDCIEFTNESEILISRALAPAIVNSVKI- 297
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
+ + V + EQ S AIG+ G N+RLAS L+G+ I++ +N E +
Sbjct: 298 -EDKKAIVSLNSEQKSKAIGKNGINIRLASMLSGYEIELNELSSSQLNNAISNEEAMKNL 356
Query: 363 MQAINV 368
+
Sbjct: 357 QDLFKI 362
>gi|197294650|ref|YP_001799191.1| transcription elongation factor NusA [Candidatus Phytoplasma
australiense]
gi|171853977|emb|CAM11940.1| Transcription elongation factor [Candidatus Phytoplasma
australiense]
Length = 357
Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats.
Identities = 93/346 (26%), Positives = 173/346 (50%), Gaps = 9/346 (2%)
Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV 72
D ++ E+ + ++ V+ + + + RV + ++ L++ VV+E
Sbjct: 10 LDKISQERDLPKEEVVEAFTKGLIAGCKKN-NRVKSCRVHLKENKNEVLLYKQFIVVDET 68
Query: 73 E------NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
ISL+ A+ +G V+ + P DF A++ K +++ + +
Sbjct: 69 NANTINLKEWTPISLEEAQKIKLHAKVGQVLEIKVNPKDFNLYAIKEFKNQFNEELTKRK 128
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSY 185
R+ Y FK + G++IS V ++L ++ + ET G+R++ +
Sbjct: 129 RESVYQFFKQQEGKLISAKVISENEKFYNLELEKEIATLLLKKETSGNNLPHIGERIQVF 188
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ +VR+ + P++ +S H +VK+F +PEI GIV++ ++R G R K+ + S D
Sbjct: 189 LLEVRKTSKWPKIFVSHNHVGLVVKVFEENIPEIQEGIVKIMTIARISGERTKIGLVSYD 248
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304
+DP+G+C+G R++ ++ L+ EKID+ WS D + NALRPA V++ ++
Sbjct: 249 PQVDPIGSCIGENSDRIRNIIKILKGEKIDLFRWSEDEKELISNALRPAQCIDVIIKNDR 308
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350
I+P +Q SLAIG+ G+NV+LA+++T W IDI T
Sbjct: 309 NKHALAIIPDDQFSLAIGKLGKNVKLAAEVTKWNIDIKTLSHAKKE 354
>gi|145220365|ref|YP_001131074.1| transcription elongation factor NusA [Prosthecochloris vibrioformis
DSM 265]
gi|145206529|gb|ABP37572.1| NusA antitermination factor [Chlorobium phaeovibrioides DSM 265]
Length = 551
Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats.
Identities = 117/396 (29%), Positives = 205/396 (51%), Gaps = 29/396 (7%)
Query: 26 VVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVAR 85
+ ++ D IQK R Y + + INPE GD ++ L ++VEEV+ +ISL+ R
Sbjct: 43 DIADLLKDIIQKQLRKDYDPEVEANIFINPERGDFEVYILKKIVEEVDIAPIEISLEEIR 102
Query: 86 DRDPSIDIGGVVSD-PLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIIS 143
D S+++G + P+ ++ R ++Q KQ + +KVR+ ER Y E +KVGE+++
Sbjct: 103 KIDESLEVGDFYEEGPIKLDEYLTRKSIQIIKQSVQKKVRDLERMVVYEECLEKVGEVVA 162
Query: 144 GTVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGDRVKSY------------- 185
V +V VI + V+ + E + ++N R R+K Y
Sbjct: 163 AEVYQVRSNEVIFTYNTTKDHRVELVLPKSEMMKKDNPRRTPRMKLYVKNIERERVKIRL 222
Query: 186 ----IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
I + + G +V++SR +F+ KLF EVPEI +G++ +K ++R PG RAK+AV
Sbjct: 223 EDGTIEEKEKADGGMKVIVSRVDDRFLYKLFEQEVPEILDGLIVIKGIARVPGERAKVAV 282
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+ + IDPVGA VG RG R+Q++V EL +E ID++ ++ + ++ AL+PA + + +
Sbjct: 283 ESTSARIDPVGATVGYRGKRIQSIVKELNNENIDVIYYNDEPQVYISRALQPAKIDPLTV 342
Query: 302 --DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
D + V++ +Q+ AIG+ G N+ LA +LTG+ I++ + D +
Sbjct: 343 HADMKTRKARVMLKPDQIKYAIGKNGNNIHLAEKLTGYEIEVYRDVIDKSMEDPTDIDII 402
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEI 395
+ + + + L+ G + + + EI
Sbjct: 403 E---FREEFGDDMIYQLLDAGLDTAKRVLKAGVDEI 435
>gi|157414753|ref|YP_001482009.1| transcription elongation factor NusA [Campylobacter jejuni subsp.
jejuni 81116]
gi|157385717|gb|ABV52032.1| transcription termination factor NusA [Campylobacter jejuni subsp.
jejuni 81116]
gi|307747392|gb|ADN90662.1| Transcription termination factor NusA [Campylobacter jejuni subsp.
jejuni M1]
gi|315931099|gb|EFV10073.1| transcription termination factor NusA [Campylobacter jejuni subsp.
jejuni 327]
Length = 362
Score = 221 bits (562), Expect = 3e-55, Method: Composition-based stats.
Identities = 105/366 (28%), Positives = 192/366 (52%), Gaps = 13/366 (3%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ I +++A EK+++ + V +A ++ A+ +YG + V +P+ ++L++ + +
Sbjct: 4 IADIIESIANEKNLNLENVREKVATALINTAKRIYGQEYEFFV--DPKN--LNLYQKITI 59
Query: 69 VEEVEN-----YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
V + + I+L A+ P ++IG ++ + GR AV + + + ++
Sbjct: 60 VADNDERLQNKSESFIALSKAKSEAPDVEIGDELTYECSLENLGRTAVNTLHKELEYHIQ 119
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRV 182
+ + ++K+KVG+++ GTV RV+ N +++ + R I E + GD
Sbjct: 120 KLLEQTIFEKYKNKVGQMVFGTVVRVDNEENTFIEIDELRAFLPRKNRIKGEKFKIGDVA 179
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
K+ I V +G ++ LSRT P+F+ L EVPEI +G V + +R PG RAK+ +
Sbjct: 180 KAVIRRVYT-DKGIKIELSRTSPKFLECLLEAEVPEIKDGYVNIIGCARIPGERAKIILQ 238
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
++ ++IDPVGA VG++G R+ AV EL +E ID + ++ +S + AL PAIV V +
Sbjct: 239 ANGANIDPVGATVGVKGVRINAVSKELHNENIDCIEFTNESEILISRALAPAIVNSVKI- 297
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
+ + V + EQ S AIG+ G N+RLAS L+G+ I++ +N E +
Sbjct: 298 -EDKKAIVSLNSEQKSKAIGKNGINIRLASMLSGYEIELNELSSSQLNNAISNEEAMKNL 356
Query: 363 MQAINV 368
+
Sbjct: 357 QDLFKI 362
>gi|284931121|gb|ADC31059.1| transcription elongation factor NusA [Mycoplasma gallisepticum str.
F]
Length = 622
Score = 221 bits (562), Expect = 3e-55, Method: Composition-based stats.
Identities = 118/479 (24%), Positives = 215/479 (44%), Gaps = 33/479 (6%)
Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
+S + L+ VA K+I + + +++ D+I +A I V I+ + G +
Sbjct: 1 MSVDNKSFLEAIQTVAETKNISKKEISTILKDAIIRACAKE-DPDQRIDVMIDFDMGLLK 59
Query: 62 LFRLLEVV-----EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116
+F+L +V+ EE + +I L+ A +P+I +G L DF RV + Q
Sbjct: 60 IFKLYKVIDDSVGEEEFDEINEIHLRDALATNPTIKVGDDFLKSLSIGDFSRVVATNISQ 119
Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN--VIVDLGNSDGVIRRDETISRE 174
QK+ E + E+ K+ +I+ GTV++ E ++V+LG + + + E
Sbjct: 120 YFRQKLSELVNKQAVSEWTPKLNKIVRGTVEKDENNPNVLLVNLGGIYAYYYKRDWVPNE 179
Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234
L+ + ++ + + +++SR+ ++ + +PEI GIV++KA+ R G
Sbjct: 180 ELQNDVEYDFVLTQIKEQSKSWPLVVSRSDALYVKHVLTENIPEIKEGIVEIKAIQRVAG 239
Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTEL---------RDEKIDIVVWSPDSAT 285
+ K+AV S++ IDPV +G G R++++ L +E ID+ W+ D
Sbjct: 240 QKTKVAVLSNNPDIDPVTLILGDGGIRIKSIAANLIEHSSGVKVSNEVIDVFHWNDDVFK 299
Query: 286 FVINALRPAIVTKVVLDED---VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342
+ NA P + V + ED +++IV + L IGR G NVRL S +TGW+ID
Sbjct: 300 LIANACYPVDIIGVDVLEDSERDKSVDIIVEDQYLPFLIGRAGINVRLLSYMTGWSIDFK 359
Query: 343 TEEEDSINRQKDFNERTQFFMQAINVDEI-----IAHLLVAEGFADVEELACVKISEIAS 397
++ + A+ VD+ + + F VE + I+ +
Sbjct: 360 SQSAAIEDNINVVPLNYSPVDNAVLVDQFKRNSRRTKIASKQPFKKVETVQTPLIAYSTA 419
Query: 398 IEGFDEETAV--EIQGRAREYLEGIDITLQKKIRELGVSEELCSI-----PGIDSKIKV 449
+EG D+ +I A+E I L K + V ++L GI+ ++ V
Sbjct: 420 VEGDDDIKVDFQKIYEEAKE-PRYEMIDLTKYQPKPVVQDDLEEYQPELGDGIEDELVV 477
>gi|319441434|ref|ZP_07990590.1| transcription elongation factor NusA [Corynebacterium variabile DSM
44702]
Length = 344
Score = 221 bits (562), Expect = 3e-55, Method: Composition-based stats.
Identities = 125/362 (34%), Positives = 187/362 (51%), Gaps = 31/362 (8%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
L A+ + + + ++ ++ ++ + R L RVEI+ G + + R
Sbjct: 5 LSALKALEDMEHVQEESLIRAISFALLDSYRELTKVEDRARVEIDRVDGTVRVLRS---- 60
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
+ D ++ G D P DFGR A ++ + I +V A +
Sbjct: 61 ----------------EIDDDGNVTGEFDD--TPTDFGRDAARAVRDAIRGQVNAARAET 102
Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETISRENLRPGDR 181
Y ++ G ++SG V R N +V LG DG+I E I E L GDR
Sbjct: 103 SYGKYSALEGTVVSGVVSRDARANERGLTVVHLGTEADGHDGMILTAEHIPGEKLEHGDR 162
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
VK Y+ V R QRG Q+LLSRTHP+ + LF +EVPE+ + V++ ++R+ G R+K+AV
Sbjct: 163 VKCYVTAVHRGQRGIQILLSRTHPELVRGLFALEVPEVADEAVEIAGIAREAGHRSKVAV 222
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+ + ++ GAC+G RG RV +++ L EKIDIV +S D A +V NAL PA V +V +
Sbjct: 223 RSTVNGLNAKGACIGPRGQRVTSIMDALGGEKIDIVDYSEDPAVYVGNALAPAKVVRVDV 282
Query: 302 -DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
D D+ +VP QLSLAIGR GQN RLA++LTGW IDI E + + + T+
Sbjct: 283 TDHDMQVARAVVPDHQLSLAIGREGQNARLAARLTGWKIDIRPESDPAETGEAGEYRDTR 342
Query: 361 FF 362
Sbjct: 343 ED 344
>gi|162447183|ref|YP_001620315.1| transcription elongation factor NusA [Acholeplasma laidlawii PG-8A]
gi|161985290|gb|ABX80939.1| transcription termination factor [Acholeplasma laidlawii PG-8A]
Length = 358
Score = 220 bits (561), Expect = 4e-55, Method: Composition-based stats.
Identities = 97/346 (28%), Positives = 174/346 (50%), Gaps = 9/346 (2%)
Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV 72
+ VA + ++++ V + A + G + RVE E ++ ++ V+ E
Sbjct: 10 IEEVAEDNDLNKEQVFHAFEQGLIAACKKQLGVQT-CRVEFKEEKHELLIYGQYYVLPEG 68
Query: 73 E------NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
E + L+ A+ S G ++ + P +F A + K + + + +
Sbjct: 69 ELNLELDKKYTFLKLEDAKALKKSAKAGEILEVKIEPSEFSYNASRDLKHRFNEVLNQIK 128
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSY 185
++ Y KD E+++ V E +++ ++ + E + + GDR+K Y
Sbjct: 129 KENIYQGLKDLQYEMVTARVLEEEKDFYRIEINKDVITMLPKKEALPTDKFHVGDRIKVY 188
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ DV + +GP++ +SRTH + +L VPEI +G ++V ++RDPG R+K+ + S++
Sbjct: 189 VTDVEMKTKGPKIYVSRTHVALVTRLLEEYVPEIKDGTIEVLGIARDPGDRSKVGLKSNN 248
Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDED 304
++D +GA VG G R++ + L EKID+ WS + + N+L+PA V V ++
Sbjct: 249 ENVDVIGATVGEGGVRIKEISKFLSGEKIDLFRWSDNEQELIGNSLQPAPVVAVTRVNPK 308
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350
IVP QLSLAIG+ GQNV+LA Q +GW+IDI +E +
Sbjct: 309 EKSALAIVPDAQLSLAIGKLGQNVKLAVQASGWSIDIKSETTAAEE 354
>gi|254457123|ref|ZP_05070551.1| transcription termination factor NusA [Campylobacterales bacterium
GD 1]
gi|207085915|gb|EDZ63199.1| transcription termination factor NusA [Campylobacterales bacterium
GD 1]
Length = 377
Score = 220 bits (561), Expect = 5e-55, Method: Composition-based stats.
Identities = 101/356 (28%), Positives = 181/356 (50%), Gaps = 13/356 (3%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+L I DA+A+EK + + VL + + + A+ + I+ T I + + + V
Sbjct: 4 ILDIVDAIAHEKGLQPEKVLEALKTAFVQTAKRVIDRNFAFEASIDESTKSIEIVQTITV 63
Query: 69 VEE-------VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
+ + E IS+ AR+ D +++ + P ++GR + I
Sbjct: 64 LADDDQRLQDEEVAPAYISITDAREYDDQVELEDQLQVPHDLEEYGRTGASQLHREIEYH 123
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGN-VIVDLGNSDGVIRRDETISRENLRPGD 180
++ D + ++K K+G +++G V V+ N +++ ++ I E + GD
Sbjct: 124 IQRLVEDELFNKYKSKIGSLVTGRVTSVDSHNATYIEVDEVRAILPMKSRIKGEVFKKGD 183
Query: 181 RVKSYIYDVR-REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
+K+ + V ++ G Q+ LSRT P+F+ +L +EVPEI +G+V V+ +R PG RAK+
Sbjct: 184 HLKAVVRRVNLDKENGIQIELSRTSPKFLEELLALEVPEIADGVVIVERSARIPGERAKI 243
Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299
A+ S+ +D VGA VG++G R+ AV EL E ID V ++ F+ + PAI++ V
Sbjct: 244 ALLSTHPQVDAVGATVGVKGVRINAVSQELIGENIDCVEYTTIPELFISRVMSPAIISHV 303
Query: 300 VL----DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351
+ D + + + +P +Q S AIG+ G N+RLAS LTG I+++ +
Sbjct: 304 EIIRNEDGEAEKAIITLPADQKSKAIGKSGINIRLASMLTGLNIELVENNTVTTED 359
>gi|284992351|ref|YP_003410905.1| NusA domain-containing protein [Geodermatophilus obscurus DSM
43160]
gi|284065596|gb|ADB76534.1| NusA domain protein [Geodermatophilus obscurus DSM 43160]
Length = 524
Score = 219 bits (559), Expect = 8e-55, Method: Composition-based stats.
Identities = 81/240 (33%), Positives = 132/240 (55%), Gaps = 26/240 (10%)
Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71
AV EK I D V+ + ++ A R G +RV ++ +TG++++
Sbjct: 7 ALKAVEREKGIPADTVIEAIETALVTAYRHADGASKHVRVHVDRKTGEVAVL-------- 58
Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131
A++ P ++ V P DFGR+A +AKQVI+Q++R+AE ++ +
Sbjct: 59 ------------AQELGPDGEV--VREWDDTPSDFGRIAASTAKQVIVQRLRDAEHEQTF 104
Query: 132 LEFKDKVGEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
E+ K G+I+SG V+ + N V+VD+G + V+ E + E+ G R+++Y+
Sbjct: 105 GEYAGKEGDIVSGIVQADQRRNASGTVLVDIGKVEAVLPAAEQVPGESYPHGSRLRAYVV 164
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V R RGPQV +SRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV +S
Sbjct: 165 SVARTYRGPQVTVSRTHPNLVRKLFALEVPEIADGSVEIVAVAREAGHRSKIAVRTSVPR 224
>gi|114777565|ref|ZP_01452546.1| transcription elongation factor NusA [Mariprofundus ferrooxydans
PV-1]
gi|114552036|gb|EAU54553.1| transcription elongation factor NusA [Mariprofundus ferrooxydans
PV-1]
Length = 235
Score = 219 bits (559), Expect = 8e-55, Method: Composition-based stats.
Identities = 100/234 (42%), Positives = 155/234 (66%), Gaps = 1/234 (0%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+E+LQ+ADAVA EKS+DR++VL M +++ AAR Y ++ EI+ +TG+I LF +
Sbjct: 2 NVEMLQVADAVAREKSVDRELVLEAMEQALKTAARRTYPG-LNVEAEIDRDTGEIRLFHV 60
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VEEVE+ +++++ A+ +G L P++ GR+A Q+AKQVI QK+REA
Sbjct: 61 RVAVEEVEDQDNELTVEEAQALRDDAVLGSEFRTALAPIELGRIAAQTAKQVINQKIREA 120
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185
ER+R E++ +VGE+I+G VKRVE GNV VDLG + V+ R++ + RE R GDRV++Y
Sbjct: 121 ERERVIAEYEPRVGELITGIVKRVERGNVYVDLGRGEAVMYREDLLPRETFRQGDRVRAY 180
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
+ +VR + +GP V +SR+ +++LF EVPEI +G V ++ + P A+L
Sbjct: 181 LREVRNQPKGPVVFVSRSDAGMVLRLFEQEVPEIEDGTVTIQRLPVIPARAARL 234
>gi|315638400|ref|ZP_07893578.1| transcription termination factor NusA [Campylobacter upsaliensis
JV21]
gi|315481528|gb|EFU72154.1| transcription termination factor NusA [Campylobacter upsaliensis
JV21]
Length = 358
Score = 217 bits (554), Expect = 3e-54, Method: Composition-based stats.
Identities = 104/360 (28%), Positives = 192/360 (53%), Gaps = 13/360 (3%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ I +++A EK+++ + V + ++ A+ +YG + V + +T +SL++ + +
Sbjct: 4 IADIIESIANEKNLELESVKDKVITALINTAKKIYGEEYEFFV--DKKT--LSLYQKILI 59
Query: 69 VEEV-----ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
V + EN I++ A+ ++IG ++ + GR AV + + + ++
Sbjct: 60 VADDDERLDENKESFIAISKAKKEAKDVEIGDELTYECSLENLGRTAVNTLHKELEYHIQ 119
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRV 182
+ + ++K+KVG+++ G+V RV+ N +++ + R I E + GD V
Sbjct: 120 KLLEQTIFDKYKNKVGQMVFGSVVRVDSEENTYIEIDELRAFLPRKNRIKGEKFKVGDVV 179
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
K+ I V +G ++ LSRT P+F+ L EVPEI +G+V V +R PG RAK+ +
Sbjct: 180 KAVIRRVYT-DKGIKMELSRTSPKFLECLLEAEVPEIKDGLVSVVKCARIPGERAKIILQ 238
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
++ S+IDPVGA VG++G R+ AV E+ +E ID + +S ++ + AL PAI+ V +
Sbjct: 239 ANSSNIDPVGATVGVKGVRINAVSKEIHNENIDCIEYSSENEILIARALAPAIINSVKI- 297
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
+ V + EQ S AIG+ G N+RL S L+G+ I++ +I+ ++ F
Sbjct: 298 -EDKTAIVSLNSEQKSKAIGKNGINIRLTSMLSGFEIELKELGAKTISNEEAMKNLQDLF 356
>gi|237751824|ref|ZP_04582304.1| transcription termination factor NusA [Helicobacter bilis ATCC
43879]
gi|229373190|gb|EEO23581.1| transcription termination factor NusA [Helicobacter bilis ATCC
43879]
Length = 384
Score = 217 bits (553), Expect = 3e-54, Method: Composition-based stats.
Identities = 99/371 (26%), Positives = 183/371 (49%), Gaps = 10/371 (2%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+L I + +A E + +D V+ + DS+ K A+ ++ V + ++ L + + V
Sbjct: 4 ILDIVEMIASENGLPQDQVVLAIKDSMVKMAKKEINENANFVVIEDWSAKELRLVQKMIV 63
Query: 69 VEEV----ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
++ + + I L AR +++ G + + R AV + I ++++
Sbjct: 64 CDDSSFSKDLESTHIPLNEARSLVENVNTGDELEYQINLEGMNRNAVNNIFHDITYQIQK 123
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVK 183
F+ +G I+ G V V+ N +++G + ++ I E + G V+
Sbjct: 124 LNEQEILKAFEKDIGHIVIGQVVHVDDEGNTSIEIGETRAILSLKNRIKGEKFKVGQPVR 183
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
S + VR + G ++ LSRT P+ + +L +EVPEI +G V + ++R PG +AK+A+++
Sbjct: 184 SILKSVRITKNGVKIELSRTTPKLLEELLMLEVPEIKDGEVSIYKIARIPGEKAKVALYT 243
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-- 301
++ IDP+G+ VG RG R+ AV EL E ID + +S FV +L PA V V L
Sbjct: 244 NNPKIDPIGSAVGARGVRINAVSKELHGENIDCIEYSSVPEIFVAKSLSPAQVISVKLQK 303
Query: 302 ---DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358
+E+ + V + K Q S AIG+ G N+RLAS LTG+ ++ + + +
Sbjct: 304 ADTEEEKPKAIVQIAKSQKSKAIGKAGVNIRLASMLTGYDFELQEVADKPSEQITTKDST 363
Query: 359 TQFFMQAINVD 369
+ + + ++
Sbjct: 364 EKDEDKKLGLE 374
>gi|291276369|ref|YP_003516141.1| transcription termination factor [Helicobacter mustelae 12198]
gi|290963563|emb|CBG39395.1| transcription termination factor [Helicobacter mustelae 12198]
Length = 369
Score = 217 bits (553), Expect = 3e-54, Method: Composition-based stats.
Identities = 108/364 (29%), Positives = 191/364 (52%), Gaps = 6/364 (1%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ I + +AYEK I D+VL ++ + I K A+ VE +P+ + L L V
Sbjct: 1 MDIIEIIAYEKGIPYDMVLDIVKNLIIKTAKQEINEEIQYSVEESPKEKTLKLIHNLTVC 60
Query: 70 EEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124
+ + + I+LK A++ D S+ IG ++ L + R V Q + +++
Sbjct: 61 SDEDEKAENDKHHFIALKDAKNIDASLSIGDIIKSELTLENMSRGTVNKIFQDLEYQLQR 120
Query: 125 AERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183
+ ++ + FK+K+G+I+SG V V+ N +++ + ++ I E + GD +
Sbjct: 121 SMEEQLFKSFKEKIGKIVSGVVLEVDAQENTFIEIHDIRAILPLKNRIKGERFQNGDTIS 180
Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243
+ + V+ ++ G + LSRT P+ + +L +EVPEI +G V ++ +R PG RAK+AVFS
Sbjct: 181 AILKFVKMDKNGIYLELSRTTPKMLEELLMLEVPEIKDGEVIIQKTARIPGDRAKVAVFS 240
Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303
++ ID +G+ VG++G R+ AV +L E ID + +S F+ AL PA + V + +
Sbjct: 241 TNPKIDAIGSTVGVKGVRINAVGRQLNGENIDCIEYSDVPEIFITRALAPANIINVQIKQ 300
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
+ +V + Q S AIG+ G N+RL S LTG+ I+I E+ K+ + +
Sbjct: 301 EELIAKVKLMASQKSKAIGKNGVNIRLVSMLTGYNIEIEEIAEEIKENTKEEATTHKLGI 360
Query: 364 QAIN 367
A+
Sbjct: 361 GALE 364
>gi|57242307|ref|ZP_00370246.1| transcription termination factor NusA [Campylobacter upsaliensis
RM3195]
gi|57016987|gb|EAL53769.1| transcription termination factor NusA [Campylobacter upsaliensis
RM3195]
Length = 358
Score = 217 bits (553), Expect = 4e-54, Method: Composition-based stats.
Identities = 104/360 (28%), Positives = 191/360 (53%), Gaps = 13/360 (3%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ I +++A EK+++ + V + ++ A+ +YG + V + +T +SL++ + +
Sbjct: 4 IADIIESIANEKNLELESVKDKVITALINTAKKIYGEEYEFFV--DKKT--LSLYQKILI 59
Query: 69 VEEV-----ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
V + EN I++ A+ ++IG ++ + GR AV + + + ++
Sbjct: 60 VADDDERLDENKESFIAISKAKKEAKDVEIGDELTYECSLENLGRTAVNTLHKELEYHIQ 119
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRV 182
+ + ++K+KVG+++ G+V RV+ N +++ + R I E + GD V
Sbjct: 120 KLLEQTIFDKYKNKVGQMVFGSVVRVDSEENTYIEIDELRAFLPRKNRIKGEKFKVGDVV 179
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
K+ I V +G ++ LSRT P+F+ L EVPEI +G V V +R PG RAK+ +
Sbjct: 180 KAVIRRVYT-DKGIKMELSRTSPKFLECLLEAEVPEIKDGFVSVVKCARIPGERAKIILQ 238
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
++ S+IDPVGA VG++G R+ AV E+ +E ID + +S ++ + AL PAI+ V +
Sbjct: 239 ANSSNIDPVGATVGVKGVRINAVSKEIHNENIDCIEYSSENEILIARALAPAIINSVKI- 297
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
+ V + EQ S AIG+ G N+RL S L+G+ I++ +I+ ++ F
Sbjct: 298 -EDKTAIVSLNSEQKSKAIGKNGINIRLTSMLSGFEIELKELGAKTISNEEAMKNLQDLF 356
>gi|283954248|ref|ZP_06371772.1| transcription termination factor NusA [Campylobacter jejuni subsp.
jejuni 414]
gi|283794266|gb|EFC33011.1| transcription termination factor NusA [Campylobacter jejuni subsp.
jejuni 414]
Length = 362
Score = 217 bits (553), Expect = 4e-54, Method: Composition-based stats.
Identities = 103/366 (28%), Positives = 191/366 (52%), Gaps = 13/366 (3%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ I +++A EK+++ + V +A ++ A+ +YG + V +P+ ++L++ + +
Sbjct: 4 IADIIESIASEKNLNLENVRERVATALINTAKRIYGQEYEFFV--DPKN--LNLYQKITI 59
Query: 69 VEEVEN-----YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
V + + I+L A+ P ++IG ++ + GR AV + + + ++
Sbjct: 60 VTDNDERLQNKSESFIALSKAKSEAPDVEIGDELTYECSLENLGRTAVNTLHKELEYHIQ 119
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRV 182
+ + ++K+KVG+++ G+V RV+ N +++ + R I E + GD V
Sbjct: 120 KLLEQTIFEKYKNKVGQMVFGSVVRVDNEENTYIEIDELRAFLPRKNRIKGEKFKIGDVV 179
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
K+ I V +G ++ LSRT P+F+ L EVPEI +G V + +R PG RAK+ +
Sbjct: 180 KAVIRRVYT-DKGIKIELSRTSPKFLECLLEAEVPEIKDGYVNIVGCARIPGERAKIILQ 238
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
++ +IDPVGA VG++G R+ AV EL +E ID + + +S + AL PAI+ V +
Sbjct: 239 ANGVNIDPVGATVGVKGVRINAVSKELHNENIDCIESTNESEILISRALAPAIINSVKI- 297
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
+ + V + EQ S AIG+ G N+RLAS L+G+ I++ ++ E +
Sbjct: 298 -EDKKAIVSLNSEQKSKAIGKNGINIRLASMLSGYEIELNELSSSQVSNTISNEEAMKNL 356
Query: 363 MQAINV 368
+
Sbjct: 357 QDLFKI 362
>gi|222823361|ref|YP_002574935.1| transcription elongation factor NusA [Campylobacter lari RM2100]
gi|222538583|gb|ACM63684.1| transcription elongation factor NusA [Campylobacter lari RM2100]
Length = 363
Score = 217 bits (553), Expect = 4e-54, Method: Composition-based stats.
Identities = 101/353 (28%), Positives = 189/353 (53%), Gaps = 13/353 (3%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETG-DISLFRLLE 67
+ I +++A EK++ + V + ++ A+ +YG + V ++G ++ L++ +
Sbjct: 4 ITDIIESIANEKNLQIEDVRERVKKALINTAKKIYGDKYEFFV----DSGKNLQLYQKIV 59
Query: 68 VV-EEVENYTCQ----ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122
VV ++ E + I+L AR ++IG ++ + GR AV + + +
Sbjct: 60 VVSDDDERLESENEHFIALSKARAEAKDVEIGDELTYECSLENLGRTAVNILHKELEYNI 119
Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDR 181
++ ++ Y +++ VG ++ G+V RV+ N V++ + R I E + GD
Sbjct: 120 QKLLEEKIYEKYQKMVGHMVFGSVVRVDSEENTYVEIDEFRAYLPRKNRIKGEKFKVGDV 179
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K+ I V ++ G ++ LSRT P+F+ L EVPEI +G++ + A +R PG RAK+ +
Sbjct: 180 IKAVIRHVYIDKSGMRMELSRTSPKFLEALLKAEVPEIKDGLINIYASARIPGERAKIIL 239
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
++ S+D VGA VG++G R+ AV EL++E ID + +S + A + +L PAI+ V +
Sbjct: 240 QANSPSVDAVGATVGIKGVRINAVSKELKNENIDCIEYSNEMAILITRSLAPAIINSVSI 299
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354
+ + V + EQ S AIG+ G N+RLAS L G+ I++ + ++
Sbjct: 300 --EDKKAIVTLNSEQKSKAIGKSGINIRLASMLLGYEIELNEINNEDKTNNQE 350
>gi|260578921|ref|ZP_05846824.1| N utilization substance protein A [Corynebacterium jeikeium ATCC
43734]
gi|258602895|gb|EEW16169.1| N utilization substance protein A [Corynebacterium jeikeium ATCC
43734]
Length = 292
Score = 216 bits (551), Expect = 6e-54, Method: Composition-based stats.
Identities = 111/313 (35%), Positives = 170/313 (54%), Gaps = 32/313 (10%)
Query: 52 EINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAV 111
+I+P +G++++++ VE+ E + + + I P +FGR
Sbjct: 2 DIDPISGEVTIYQ----VEKDE------------EGNVTGRIDDT------PKNFGRDGA 39
Query: 112 QSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDG 163
+ ++ I +++ A +Y E+ + ++SG V N IV LG DG
Sbjct: 40 LAVREAIRFRIKSARVQNRYDEYAELRYRVVSGVVSADARANERGVTIVHLGTEANGQDG 99
Query: 164 VIRRDETISRENLRPGDRVKSYIYD-VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNG 222
I E I E L G RVK+++ D + R Q+ LSRTHP+ + LF +EVPE+ +G
Sbjct: 100 QILPAEHIPGEELEHGMRVKAFVTDVINNANRMVQINLSRTHPELVKGLFALEVPEVADG 159
Query: 223 IVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPD 282
V++ +V+R+ G R K+AV S+ ++ GAC+G RG RV ++ EL EKIDI+ +S D
Sbjct: 160 SVEIVSVAREAGHRTKIAVRSTVKGLNAKGACIGPRGQRVSNIMQELGGEKIDIIDYSDD 219
Query: 283 SATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
ATFV NAL P+ V V + D ++ +VP QLSLAIGR GQN RLA++LTGW IDI
Sbjct: 220 PATFVGNALSPSKVVSVKVTDPEMQIARAVVPDYQLSLAIGREGQNARLAARLTGWKIDI 279
Query: 342 ITEEEDSINRQKD 354
+E + +
Sbjct: 280 RSETDAAAEDTPS 292
>gi|224438382|ref|ZP_03659309.1| transcription elongation factor NusA [Helicobacter cinaedi CCUG
18818]
gi|313144824|ref|ZP_07807017.1| transcription elongation factor NusA [Helicobacter cinaedi CCUG
18818]
gi|313129855|gb|EFR47472.1| transcription elongation factor NusA [Helicobacter cinaedi CCUG
18818]
Length = 398
Score = 214 bits (546), Expect = 2e-53, Method: Composition-based stats.
Identities = 105/383 (27%), Positives = 184/383 (48%), Gaps = 25/383 (6%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+L I D +AY+K +D VVL ++ + + K A+ + VE + + + LF +V
Sbjct: 4 ILDIIDLIAYDKGLDNGVVLEIVKNGLIKIAQEEINPLYHYIVEPDVKERILKLFYRKKV 63
Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+ E+ I L A++ + +G + L + R A+ + ++
Sbjct: 64 CADDVKLTEEDLATSIPLSQAKEFG-DVSVGDELDCELQLDEMSRGAINKLFLNLEYNLQ 122
Query: 124 EAERDRQYLEFKDKVGEIISG-TVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182
+ D+ F+ ++G+I++G V E GN V++ + ++ + I E+ + GD +
Sbjct: 123 RSIEDQILQGFRAQLGKIVNGQVVGVDERGNTFVEIDSIRALLPQKNRIKGESFKVGDTI 182
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
++ + V + G QV LSRT P+F+ +L +EVPEI + V + +R PG RAK+AV+
Sbjct: 183 RAVLKFVGINKNGLQVELSRTTPKFLEELLALEVPEIKDNEVMIFKSARIPGDRAKVAVY 242
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
S++ IDP+G CVG++G R+ AV EL +E ID V + F+ AL PA + V +
Sbjct: 243 SNNPRIDPIGCCVGVKGVRINAVSKELANENIDCVEYHSTLEIFIAKALTPAQILSVKIQ 302
Query: 303 E------------------DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344
E + + V++ +Q S AIG+ G N+RLAS L I++
Sbjct: 303 EQNIEQSERENMEGEKEKNERKKAIVLIKSDQKSKAIGKGGVNIRLASMLCDCDIELCEI 362
Query: 345 EEDSINRQKDFNERTQFFMQAIN 367
+ + K + T
Sbjct: 363 DTPNTGDSKADSNTTTPSENTAQ 385
>gi|289548941|ref|YP_003473929.1| NusA antitermination factor [Thermocrinis albus DSM 14484]
gi|289182558|gb|ADC89802.1| NusA antitermination factor [Thermocrinis albus DSM 14484]
Length = 327
Score = 213 bits (542), Expect = 6e-53, Method: Composition-based stats.
Identities = 124/347 (35%), Positives = 203/347 (58%), Gaps = 25/347 (7%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
L ++ + VA EK++ +V + +SI A + D+ V++ + I + +
Sbjct: 5 LRRLIEQVAKEKNLPEWLVERALRNSIALAVKKSQKIREDVEVQLEDD--HIKAYLVR-- 60
Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
R +D +I + + P D R+A +AK+ ++++ AE +
Sbjct: 61 ----------------RSKDQTIKL----PIDIEPADMDRIAAYAAKEEFLKELERAEEE 100
Query: 129 RQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
R YLEF + GEI+ G V++ E G+++VDLG GV+ + E I +E+ + GDR+++ +
Sbjct: 101 RSYLEFVELEGEIVVGIVRKVQEDGDLLVDLGKVMGVLPKKEQIPKEHYKVGDRLRALLL 160
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
+VR+ + +++LSRTHP+F+ KL EVPEI G ++V+A++R+PG RAK+ V S+DS
Sbjct: 161 EVRKRRGKYEIILSRTHPRFLKKLLEAEVPEIKEGYIKVEAIAREPGERAKVLVSSTDSR 220
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DPVG VG+RGS++ + EL E+ID++ S + +L PA V+ V L + R
Sbjct: 221 MDPVGVVVGVRGSKIAPITEELSGERIDVIKKSDSVEELIKRSLAPAPVSAVRLFPEEKR 280
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354
EV VPKE+LSLAIG+ G NVRLAS++TGW ID+ +EE+ +
Sbjct: 281 AEVAVPKEKLSLAIGKGGVNVRLASKITGWRIDVYSEEDFEKLTKMT 327
>gi|206896456|ref|YP_002247276.1| transcription termination factor NusA [Coprothermobacter
proteolyticus DSM 5265]
gi|206739073|gb|ACI18151.1| transcription termination factor NusA [Coprothermobacter
proteolyticus DSM 5265]
Length = 343
Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats.
Identities = 88/341 (25%), Positives = 160/341 (46%), Gaps = 18/341 (5%)
Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV 72
+A + + ++ + D++ A R + + +++ E
Sbjct: 17 IRQIASDLDLTPQEIIEALKDALVSAIRKELDIPKEA------------VGSAIKIEENG 64
Query: 73 ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYL 132
+ ++ + + + PL + RV++Q+A+ + ++ E +++
Sbjct: 65 SSLKFLVNKDFVKTIPEDEAVSDWIEFPLS--NLSRVSIQTAENTLKNRMNEKSKEKAIK 122
Query: 133 EFKDKVGEIISGTVKRVEYGN--VIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190
GE+++ V R + + +D+ + V+ E + + PGD ++ + +
Sbjct: 123 RIAQFSGEVVTARVIRRDPKTKLIYMDVDGVECVLEPSEQLPTDRYAPGDSLRCLVLGAK 182
Query: 191 REQRGPQ-VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSID 249
Q V LSR+ P + LF +EVPE+ +G+V++ ++R PG R+K+AV S D +D
Sbjct: 183 NIPMYGQGVALSRSSPDLLKLLFTLEVPEVADGVVRIMGIARKPGRRSKVAVMSIDPRLD 242
Query: 250 PVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRI 308
P GAC+G +G R+QA+ L +EKID+V W D A + N L P V KV + D R
Sbjct: 243 PQGACIGYKGQRIQAISRSLANEKIDVVRWDTDPAKLIANVLSPGKVDKVEVLDPKNKRA 302
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
V + + + +G G+NV LA QLTGWTID+ D
Sbjct: 303 LVYTTPDNIKVVVGEDGENVELAEQLTGWTIDVREGGPDED 343
>gi|114777564|ref|ZP_01452545.1| transcription elongation factor NusA [Mariprofundus ferrooxydans
PV-1]
gi|114552035|gb|EAU54552.1| transcription elongation factor NusA [Mariprofundus ferrooxydans
PV-1]
Length = 254
Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats.
Identities = 111/271 (40%), Positives = 158/271 (58%), Gaps = 19/271 (7%)
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
S+D S+DPVGACVGMRG+RVQAVV EL EKIDI+ W+ D A FV+NAL PA + +V++D
Sbjct: 3 STDPSVDPVGACVGMRGARVQAVVNELHGEKIDIIEWTDDPAAFVVNALAPAEIERVMVD 62
Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
E IE V +E L++AIGRRGQNVRLAS L+GW I++++ E+ R ++ + F
Sbjct: 63 EATNTIEAAVSEENLAIAIGRRGQNVRLASDLSGWHIELMSTGEEKERRHEEVVKARTVF 122
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
+ ++VDE A +LV EGF +EELA +IA+IEG D E A E+Q RAR L +
Sbjct: 123 QEGLDVDEAFATVLVDEGFFSLEELAYCAAEDIAAIEGLDAEIAQELQKRARNVLLDQAL 182
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482
E G + L +PG+ +I L + T+E LA + D++
Sbjct: 183 KQGS--EEAGSAVTLLDLPGMTREIAEQLAAREMTTVESLADAAGDEIEDIE-------- 232
Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513
G +++ +++II AR GW +
Sbjct: 233 ---------GLSREEADALIIAAREACGWFD 254
>gi|32266771|ref|NP_860803.1| transcription elongation factor NusA [Helicobacter hepaticus ATCC
51449]
gi|32262823|gb|AAP77869.1| transcription termination factor NusA [Helicobacter hepaticus ATCC
51449]
Length = 375
Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats.
Identities = 105/345 (30%), Positives = 177/345 (51%), Gaps = 11/345 (3%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+L I D +AY+K ++ VL ++ + + K A+ D VE + + + LF ++V
Sbjct: 4 ILDIIDLIAYDKGLESQAVLEIVKEGLIKIAQEEINPHYDYFVEQDAKERTLKLFYRMKV 63
Query: 69 VEEVENYTCQ-----ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+ ++ + + + L A+ + IG V L R A+ + ++
Sbjct: 64 CADEQDLSEENLGTFLPLSQAKGLG-DVSIGDEVDCELQLDAMSRGAINKLFLNLEYNLQ 122
Query: 124 EAERDRQYLEFKDKVGEIIS-GTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182
+ ++ F+ VG+I++ V + GN +++ + ++ + I EN + GD V
Sbjct: 123 RSIENQILQNFRAMVGKIVNGQVVGIDDSGNTFIEIESIRAILPQKNRIKGENFKVGDCV 182
Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242
++ + V + G QV LSRT P+F+ +L MEVPEI + V + +R PG RAK+AV+
Sbjct: 183 RAILKFVGINRNGLQVELSRTTPKFLEELLAMEVPEIKDNEVIIHKSARIPGDRAKVAVY 242
Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302
S+ + IDP+G CVG++G R+ AV EL +E ID V + FV AL PA V V ++
Sbjct: 243 SNSARIDPIGCCVGVKGVRINAVSKELANENIDCVEYHSTLEIFVAKALTPAQVVSVKIE 302
Query: 303 E----DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343
E + + V + EQ S AIG+ G N+RLAS L I++
Sbjct: 303 EAQEGERKKAIVQIKSEQKSKAIGKNGVNIRLASMLCECDIELQE 347
>gi|194335549|ref|YP_002017343.1| NusA antitermination factor [Pelodictyon phaeoclathratiforme BU-1]
gi|194308026|gb|ACF42726.1| NusA antitermination factor [Pelodictyon phaeoclathratiforme BU-1]
Length = 514
Score = 207 bits (526), Expect = 5e-51, Method: Composition-based stats.
Identities = 122/396 (30%), Positives = 210/396 (53%), Gaps = 29/396 (7%)
Query: 26 VVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVAR 85
+ ++ D IQK R Y + + INPE GD ++ L ++VEE++ + +I+LK R
Sbjct: 43 DIADLLKDIIQKQLRKDYDPEVESNIFINPERGDFEVYILKKIVEEIDIESIEITLKEVR 102
Query: 86 DRDPSIDIGGVVSD-PLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIIS 143
D S++IG + P+ D+ R ++Q KQ + +KVR+ ER Y E +KVGEI++
Sbjct: 103 KIDDSLEIGDYYEEGPIRLEDYLSRKSIQIIKQSVQKKVRDLERLVVYEECLEKVGEIVA 162
Query: 144 GTVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGDRVKSYIYDVRRE------ 192
G V +V VI + V+ + E + ++N R R+K Y+ + RE
Sbjct: 163 GEVYQVRANEVIFTYNTSKDHRVELVLPKSEMMKKDNPRRTPRMKLYVKRIEREKAKVRL 222
Query: 193 -----------QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
G +V++SR +F+ KLF EVPEI +G++ +KA++R PG RAK+AV
Sbjct: 223 DDGSMVEREKADGGMKVIVSRVDDRFLYKLFEHEVPEILDGLIVIKAIARVPGERAKVAV 282
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
S+ + IDPVGA VG RG R+Q++V EL +E ID++ ++ + ++ A++PA + + +
Sbjct: 283 ESTSARIDPVGATVGYRGKRIQSIVKELNNENIDVIYYADEPQIYISRAMQPAKIDPLTV 342
Query: 302 DED--VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359
D + V++ +Q+ AIG+ G N+ LA +LTG+ ID+ + D +
Sbjct: 343 HADVKTRKARVMLKPDQIKYAIGKNGNNIHLAEKLTGYEIDVYRDVIDKSTEDPTDIDII 402
Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEI 395
+ + + + L+ G +++ + EI
Sbjct: 403 E---FREEFGDDMIYQLLDGGLDTAKKVLKAGVDEI 435
>gi|87042915|gb|ABD16467.1| NusA [Tomato big bud phytoplasma]
Length = 319
Score = 207 bits (526), Expect = 5e-51, Method: Composition-based stats.
Identities = 92/315 (29%), Positives = 169/315 (53%), Gaps = 9/315 (2%)
Query: 35 IQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVE------NYTCQISLKVARDRD 88
+ + + S ++ + + +I L++ V +E + I+L+ A+
Sbjct: 5 LISGCKKNHKVKS-CKIHLKEDKSEIILYKQFLVADEATISTINLKESTPITLEEAQQIK 63
Query: 89 PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR 148
P IG V+ + P DF AV+ K +++ + +R+ Y FK + G++IS +
Sbjct: 64 PHAKIGQVIDIKVDPKDFNLYAVKEFKNQFNEELTKKKRENIYNFFKQQEGKLISAKIIS 123
Query: 149 VEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQF 207
++L ++ + E S ++ G+R++ ++ +V++ + P++ +S H
Sbjct: 124 ENDKFYNLELEKEITTLLPKKEIASNNEMQVGERIQVFLSEVKKTTKWPKIFVSCNHVGL 183
Query: 208 MVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVT 267
+VK+ +PEI GIV++ V+R G R K+ +FS D+ ID +G+C+G R +R++ V+
Sbjct: 184 VVKVLEENIPEIQEGIVKIAGVARISGERTKIGLFSCDAQIDAIGSCIGERSNRIKNVIK 243
Query: 268 ELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQ 326
L+ EKID+ +WS D + NAL+PA +VV+ D+ IVP +Q SLAIG+ G+
Sbjct: 244 ILKGEKIDLFIWSDDPQELIANALKPASCLQVVIKDDINKCALAIVPDDQFSLAIGKLGK 303
Query: 327 NVRLASQLTGWTIDI 341
N +LA ++T W IDI
Sbjct: 304 NAKLAVEVTKWNIDI 318
>gi|87042921|gb|ABD16470.1| NusA [Tomato yellows phytoplasma]
Length = 319
Score = 207 bits (526), Expect = 5e-51, Method: Composition-based stats.
Identities = 92/315 (29%), Positives = 170/315 (53%), Gaps = 9/315 (2%)
Query: 35 IQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN------YTCQISLKVARDRD 88
+ + + S ++++ + +I L++ V +E + I+L+ A+
Sbjct: 5 LISGCKKNHKVKS-CKIQLKEDKSEIILYKQFLVADEATMSTINLKESTPITLEEAQQIK 63
Query: 89 PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR 148
P IG V+ + P DF AV+ K +++ + +R+ Y FK + G++IS +
Sbjct: 64 PHAKIGQVIDIKVDPKDFNLYAVKEFKNQFNEELTKKKRENIYNFFKQQEGKLISAKIIS 123
Query: 149 VEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQF 207
++L ++ + E S ++ G+R++ ++ +VR+ + P++ +S H
Sbjct: 124 ENDKFYNLELEKEITTLLPKKEIASNNEMQVGERIQVFLSEVRKTTKWPKIFVSCNHVGL 183
Query: 208 MVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVT 267
+VK+ +PEI GIV++ V+R G R K+ + S D+ +D +G+C+G R +R++ V+
Sbjct: 184 VVKVLEENIPEIQEGIVKIAGVARISGERTKIGLLSCDAQVDAIGSCIGERSNRIKNVIK 243
Query: 268 ELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQ 326
L+ EK+D+ VWS D + NAL+PA +VV+ D+ IVP +Q SLAIG+ G+
Sbjct: 244 ILKGEKVDLFVWSDDPQELIANALKPASCLQVVIKDDINKYALAIVPDDQFSLAIGKLGK 303
Query: 327 NVRLASQLTGWTIDI 341
NV+LA ++T W IDI
Sbjct: 304 NVKLAVEVTKWNIDI 318
>gi|87042911|gb|ABD16465.1| NusA [Blueberry stunt phytoplasma]
Length = 319
Score = 206 bits (524), Expect = 8e-51, Method: Composition-based stats.
Identities = 93/315 (29%), Positives = 170/315 (53%), Gaps = 9/315 (2%)
Query: 35 IQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN------YTCQISLKVARDRD 88
+ + + S ++++ + +I L++ V +E + I+L+ A+
Sbjct: 5 LISGCKKNHKVKS-CKIQLKEDKSEIILYKQFLVADEATMSTINLKESTPITLEEAKQIK 63
Query: 89 PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR 148
P IG V+ + P DF AV+ K +++ + +R+ Y FK + G++IS +
Sbjct: 64 PHAKIGQVIDIKVDPKDFNLYAVKEFKNQFNEELTKKKRENIYNFFKQQEGKLISAKIIS 123
Query: 149 VEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQF 207
++L ++ + E S ++ G+R++ ++ +VR+ + P++ +S H
Sbjct: 124 ENDKFYNLELEKEITTLLPKKEIASNNEMQVGERIQVFLSEVRKTTKWPKIFVSCNHVGL 183
Query: 208 MVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVT 267
+VK+ +PEI GIV++ V+R G R K+ + S D+ +D +G+CVG R +R++ V+
Sbjct: 184 VVKVLEENIPEIQEGIVKIAGVARISGERTKIGLLSCDAQVDAIGSCVGERSNRIKNVIK 243
Query: 268 ELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQ 326
L+ EK+D+ VWS D + NAL+PA +VV+ D+ IVP +Q SLAIG+ G+
Sbjct: 244 ILKGEKVDLFVWSEDPQELIANALKPASCLQVVIKDDINKYALAIVPDDQFSLAIGKLGK 303
Query: 327 NVRLASQLTGWTIDI 341
NV+LA ++T W IDI
Sbjct: 304 NVKLAVEVTKWNIDI 318
>gi|218513202|ref|ZP_03510042.1| transcription elongation factor NusA [Rhizobium etli 8C-3]
Length = 213
Score = 205 bits (523), Expect = 1e-50, Method: Composition-based stats.
Identities = 126/179 (70%), Positives = 157/179 (87%)
Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQI 79
K IDR++VL+ MAD+IQKAARS YGT S+IR +INP+TG+I L RLLEVV++ E+Y+ QI
Sbjct: 21 KVIDREIVLAAMADAIQKAARSRYGTESNIRADINPKTGEIRLQRLLEVVDKAEDYSTQI 80
Query: 80 SLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVG 139
L++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QKVREAERDRQ+ EFKD+VG
Sbjct: 81 PLELARDRNPDAALGDFIADPLPPMDFGRIAAQSAKQVIVQKVREAERDRQFDEFKDRVG 140
Query: 140 EIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQV 198
EI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDRV++Y+YDVRREQRGPQ+
Sbjct: 141 EIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENVRYGDRVRAYVYDVRREQRGPQI 199
>gi|13357878|ref|NP_078152.1| transcription elongation factor NusA [Ureaplasma parvum serovar 3
str. ATCC 700970]
gi|170762445|ref|YP_001752400.1| transcription elongation factor NusA [Ureaplasma parvum serovar 3
str. ATCC 27815]
gi|11356991|pir||H82905 N-utilization substance protein a UU318 [imported] - Ureaplasma
urealyticum
gi|6899295|gb|AAF30727.1|AE002129_3 N-utilization substance protein a [Ureaplasma parvum serovar 3 str.
ATCC 700970]
gi|168828022|gb|ACA33284.1| transcription termination factor NusA [Ureaplasma parvum serovar 3
str. ATCC 27815]
Length = 458
Score = 204 bits (519), Expect = 3e-50, Method: Composition-based stats.
Identities = 103/448 (22%), Positives = 202/448 (45%), Gaps = 31/448 (6%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E ++ A + I+ +V+ S++ ++ +KA + + I+ + G I+ FR L
Sbjct: 9 EFIEYFKDTAKQNEIEFEVLSSIIKEAFEKAYLRTHPGE-NFETNIDLKQGTINCFRNLV 67
Query: 68 VVEEVE----------NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117
VVE + + +I L AR + + IG ++ + +F + V +
Sbjct: 68 VVENEKVHNEDLETCLDDAVEILLDDARKINANAQIGDLIKQHISIDNFKSIEVGQIGSL 127
Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTV-------KRVEYGNVIVDLG---NSDGVIRR 167
+ QK+ E R +K + ++I V +R E V V+L + G + R
Sbjct: 128 LRQKITEIHNKRVADFWKPSLMKMIRAKVAEVNYNKQRNEITGVKVELDDQWKTLGYLSR 187
Query: 168 DETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227
+ I E + G+ I +V+ + R +LLSRT P+ + ++ EV +I NG +++K
Sbjct: 188 KDRIGDEKFKVGETYDFLIKEVKEQSRLWPILLSRTEPELVEEILKREVVDIKNGNIEIK 247
Query: 228 AVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFV 287
++R G + K+AV ++ +I+PV VG +G + ++ +L +E+IDI+ ++ D F+
Sbjct: 248 KIARIAGFKTKVAVSTNLLNIEPVAVVVGNKGLTITSISKQLNNERIDIIRYADDKRIFI 307
Query: 288 INALRPAIVTKVVLDEDV---GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344
NA+ + +++ E+ IV K+ L IGR G N+RL +++T W ID+ T
Sbjct: 308 ANAIGLDKLKGLLVQENESGQRSAIAIVSKDDLPSVIGRGGANIRLIAKITEWNIDVKTI 367
Query: 345 EEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404
E+ + + + + + E LA + E IE D +
Sbjct: 368 EQAFEENILYEKFDEKIYRS------WNIESINKKNVTNDEMLALIDSIEDDKIEQ-DVQ 420
Query: 405 TAVEIQGRAREYLEGIDITLQKKIRELG 432
++ + ++ + D + +L
Sbjct: 421 LNHPLKQQEKKVVSSNDEDGENDETQLE 448
>gi|171920241|ref|ZP_02931610.1| transcription termination factor NusA [Ureaplasma parvum serovar 1
str. ATCC 27813]
gi|183508804|ref|ZP_02958262.1| transcription termination factor NusA [Ureaplasma parvum serovar 14
str. ATCC 33697]
gi|186701622|ref|ZP_02971327.1| transcription termination factor NusA [Ureaplasma parvum serovar 6
str. ATCC 27818]
gi|171902640|gb|EDT48929.1| transcription termination factor NusA [Ureaplasma parvum serovar 1
str. ATCC 27813]
gi|182675756|gb|EDT87661.1| transcription termination factor NusA [Ureaplasma parvum serovar 14
str. ATCC 33697]
gi|186700854|gb|EDU19136.1| transcription termination factor NusA [Ureaplasma parvum serovar 6
str. ATCC 27818]
Length = 458
Score = 204 bits (519), Expect = 3e-50, Method: Composition-based stats.
Identities = 103/448 (22%), Positives = 202/448 (45%), Gaps = 31/448 (6%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E ++ A + I+ +V+ S++ ++ +KA + + I+ + G I+ FR L
Sbjct: 9 EFIEYFKDTAKQNEIEFEVLSSIIKEAFEKAYSRTHPGE-NFETNIDLKQGTINCFRNLV 67
Query: 68 VVEEVE----------NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117
VVE + + +I L AR + + IG ++ + +F + V +
Sbjct: 68 VVENEKVHNEDLETCLDDAVEILLDDARKINANAQIGDLIKQHISIDNFKSIEVGQIGSL 127
Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTV-------KRVEYGNVIVDLG---NSDGVIRR 167
+ QK+ E R +K + ++I V +R E V V+L + G + R
Sbjct: 128 LRQKITEIHNKRVADFWKPSLMKMIRAKVAEVNYNKQRNEITGVKVELDDQWKTLGYLSR 187
Query: 168 DETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227
+ I E + G+ I +V+ + R +LLSRT P+ + ++ EV +I NG +++K
Sbjct: 188 KDRIGDEKFKVGETYDFLIKEVKEQSRLWPILLSRTEPELVEEILKREVVDIKNGNIEIK 247
Query: 228 AVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFV 287
++R G + K+AV ++ +I+PV VG +G + ++ +L +E+IDI+ ++ D F+
Sbjct: 248 KIARIAGFKTKVAVSTNLLNIEPVAVVVGNKGLTITSISKQLNNERIDIIRYADDKRIFI 307
Query: 288 INALRPAIVTKVVLDEDV---GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344
NA+ + +++ E+ IV K+ L IGR G N+RL +++T W ID+ T
Sbjct: 308 ANAIGLDKLKGLLVQENESGQRSAIAIVSKDDLPSVIGRGGANIRLIAKITEWNIDVKTI 367
Query: 345 EEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404
E+ + + + + + E LA + E IE D +
Sbjct: 368 EQAFEENILYEKFDEKIYRS------WNIESINKKNVTNDEMLALIDSIEDDKIEQ-DVQ 420
Query: 405 TAVEIQGRAREYLEGIDITLQKKIRELG 432
++ + ++ + D + +L
Sbjct: 421 LNHPLKQQEKKVVSSNDEDGENDETQLE 448
>gi|87042917|gb|ABD16468.1| NusA [Paulownia witches'-broom phytoplasma]
Length = 319
Score = 203 bits (517), Expect = 5e-50, Method: Composition-based stats.
Identities = 94/315 (29%), Positives = 171/315 (54%), Gaps = 9/315 (2%)
Query: 35 IQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN------YTCQISLKVARDRD 88
+ + + S ++E+ + +I L++ V +E + I+L+ A+
Sbjct: 5 LISGCKKNHKVKS-CKIELKEDKSEIILYKQFLVADEATMSTINLKESTPITLEEAQQIK 63
Query: 89 PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR 148
P IG V+ + P DF AV+ K +++ + +R+ Y FK + G++IS +
Sbjct: 64 PHAKIGQVIDIKVDPKDFNLYAVKELKNQFNEELTKKKRENIYNFFKQQEGKLISAKIIS 123
Query: 149 VEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQF 207
++L ++ + E S ++ G+R++ ++ +VR+ + P++ +S H
Sbjct: 124 ENDKFYNLELEKEITTLLPKKEIASNNEMQVGERIQVFLSEVRKTTKWPKIFVSCNHVGL 183
Query: 208 MVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVT 267
+VK+ +PEI GIV++ V+R G R K+ + S D+ +D +G+C+G R +R++ V+
Sbjct: 184 VVKVLEENIPEIQEGIVKIAGVARISGERTKIGLLSCDAQVDAIGSCIGERSNRIKNVIK 243
Query: 268 ELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQ 326
L+DEK+D+ VWS D + NAL+PA +VV+ D+ IVP +Q SLAIG+ G+
Sbjct: 244 ILKDEKVDLFVWSDDPQELIANALKPASCLQVVIKDDINKYALAIVPDDQFSLAIGKLGK 303
Query: 327 NVRLASQLTGWTIDI 341
NV+LA ++T W IDI
Sbjct: 304 NVKLAVEVTKWNIDI 318
>gi|169302736|gb|ACA53041.1| NusA [Wheat blue dwarf phytoplasma]
Length = 317
Score = 203 bits (516), Expect = 7e-50, Method: Composition-based stats.
Identities = 89/314 (28%), Positives = 168/314 (53%), Gaps = 9/314 (2%)
Query: 35 IQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN------YTCQISLKVARDRD 88
+ + + S ++++ + +I L++ V +E + I+L+ A+
Sbjct: 4 LISGCKKNHKVKS-CKIQLKEDKSEIILYKQFLVADEATMSTINLKESTPITLEEAQQIK 62
Query: 89 PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR 148
P IG V+ + P DF AV+ K +++ + +R+ Y K + G++IS +
Sbjct: 63 PHAKIGQVIDIKVDPKDFNLYAVKEFKNQFNEELTKKKRENIYNFSKQQEGKLISAKIIS 122
Query: 149 VEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQF 207
++L ++ + E S ++ G+R++ ++ +VR+ + P++ +S H
Sbjct: 123 ENDKFYNLELEKEITTLLPKKEIASNNEMQVGERIQVFLSEVRKTTKWPKIFVSCNHVGL 182
Query: 208 MVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVT 267
+VK+ +PEI GIV++ V+R G R K+ + S D+ +D +G+C+G R +R++ V+
Sbjct: 183 VVKVLEENIPEIQEGIVKIAGVARISGERTKIGLLSCDAQVDAIGSCIGERSNRIKNVIK 242
Query: 268 ELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQ 326
L+ EK+D+ VWS D + NAL+PA +VV+ D+ IVP +Q SLAIG+ G+
Sbjct: 243 ILKGEKVDLFVWSDDPQELIANALKPASCPQVVIKDDINKYALAIVPDDQFSLAIGKLGK 302
Query: 327 NVRLASQLTGWTID 340
NV+LA ++T W I+
Sbjct: 303 NVKLAVEVTKWNIE 316
>gi|166012287|gb|ABY77760.1| transcription factor NusA [Paulownia witches'-broom phytoplasma]
Length = 315
Score = 203 bits (516), Expect = 8e-50, Method: Composition-based stats.
Identities = 91/313 (29%), Positives = 169/313 (53%), Gaps = 9/313 (2%)
Query: 35 IQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN------YTCQISLKVARDRD 88
+ + + S ++E+ + +I L++ V +E + I+L+ A+
Sbjct: 4 LISGCKKNHKVKS-CKIELKEDKSEIILYKQFLVADEATMSTINLKESTPITLEEAQQIK 62
Query: 89 PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR 148
P IG V+ + P DF A++ K +++ + +R+ Y FK + G++IS +
Sbjct: 63 PHAKIGQVIDIKVDPKDFNLYAIKELKNQFNEELTKKKRENIYNFFKQQEGKLISAKIIS 122
Query: 149 VEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQF 207
++L ++ + E S ++ G+R++ ++ +VR+ + P++ +S H
Sbjct: 123 ENDKFYNLELEKEITTLLPKKEIASNNEMQVGERIQVFLSEVRKTTKWPKIFVSCNHVGL 182
Query: 208 MVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVT 267
+VK+ +PEI GIV++ V+R G R K+ + S D+ +D +G+C+G R +R++ V+
Sbjct: 183 VVKVLEENIPEIQEGIVKIAGVARISGERTKIGLLSCDAQVDAIGSCIGERSNRIKNVIK 242
Query: 268 ELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQ 326
L+DEK+D+ VWS D + NAL+PA +VV+ D+ IVP +Q SLAIG+ G+
Sbjct: 243 ILKDEKVDLFVWSDDPQELIANALKPASCLQVVIKDDINKYALAIVPDDQFSLAIGKLGK 302
Query: 327 NVRLASQLTGWTI 339
NV+LA ++T W I
Sbjct: 303 NVKLAVEVTKWNI 315
>gi|87042919|gb|ABD16469.1| NusA [Strawberry phytoplasma FL4]
Length = 319
Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats.
Identities = 89/315 (28%), Positives = 169/315 (53%), Gaps = 9/315 (2%)
Query: 35 IQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN------YTCQISLKVARDRD 88
+ + + S ++++ + ++ L++ V +E + I+L+ A+
Sbjct: 5 LISGCKKNHKVKS-CKIQLKEDKSEMILYKQFLVADEATMSTINLKESTPITLEEAQQIK 63
Query: 89 PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR 148
P G V+ + P DF AV+ K +++ + +R+ Y FK + G++IS +
Sbjct: 64 PHAKTGQVIDIKVDPKDFNLYAVKEFKNQFNEELTKKKRENIYNFFKQQEGKLISAKIIS 123
Query: 149 VEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQF 207
++L ++ + E S ++ G+R++ ++ +VR+ + P++ +S H
Sbjct: 124 ENDKFYNLELEKEITTLLPKKEIASNNEMQVGERIQVFLSEVRKTTKWPKIFVSCNHVGL 183
Query: 208 MVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVT 267
++K+ +PEI GIV++ V+R G R K+ + S D+ +D +G+C+G R +R++ V+
Sbjct: 184 VIKVLEENIPEIQEGIVKIAGVARISGERTKIGLLSCDAQVDAIGSCIGERSNRIKNVIK 243
Query: 268 ELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQ 326
L+ EK+D+ VWS D + NAL+PA +VV+ D+ IVP +Q SLAIG+ G+
Sbjct: 244 ILKGEKVDLFVWSNDPQELIANALKPASCLQVVIKDDINKCALAIVPDDQFSLAIGKLGK 303
Query: 327 NVRLASQLTGWTIDI 341
NV+LA ++T W IDI
Sbjct: 304 NVKLAVEVTKWNIDI 318
>gi|87042913|gb|ABD16466.1| NusA [Maize bushy stunt phytoplasma]
Length = 319
Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats.
Identities = 90/315 (28%), Positives = 171/315 (54%), Gaps = 9/315 (2%)
Query: 35 IQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN------YTCQISLKVARDRD 88
+ + + S ++++ + +I L++ V +E + I+L+ A+
Sbjct: 5 LISGCKKNHKVKS-CKIQLKEDKSEIILYKQFLVADEATMSTINLKESTPITLEEAQQIK 63
Query: 89 PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR 148
P IG V+ + P DF AV+ K +++ + +R+ Y F+ + G++IS +
Sbjct: 64 PHAKIGQVIDIKVDPKDFNLYAVKELKNQFNEELTKKKRENIYNFFEQQEGKLISAKIIS 123
Query: 149 VEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQF 207
++L ++ + E S ++ G+R++ ++ +VR+ + P++ +S H
Sbjct: 124 ENDKFYNLELEKEITTLLPKKEIASNNEMQVGERIQVFLSEVRKTTKWPKIFVSCNHVGL 183
Query: 208 MVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVT 267
+VK+ +PEI GIV++ ++R G R K+ + S D+ +D +G+C+G R +R++ ++
Sbjct: 184 VVKVLEENIPEIQEGIVKIAGIARISGERTKIGLLSCDAQVDAIGSCIGERSNRIKNIIK 243
Query: 268 ELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQ 326
L+DEK+D+ VWS D + NAL+PA +VV+ D+ IVP +Q SLAIG+ G+
Sbjct: 244 ILKDEKVDLFVWSDDPQELISNALKPASCIQVVIKDDINKYALAIVPDDQFSLAIGKLGK 303
Query: 327 NVRLASQLTGWTIDI 341
NV+LA ++T W IDI
Sbjct: 304 NVKLAVEVTKWNIDI 318
>gi|209554499|ref|YP_002284717.1| transcription elongation factor NusA [Ureaplasma urealyticum
serovar 10 str. ATCC 33699]
gi|209542000|gb|ACI60229.1| transcription termination factor NusA [Ureaplasma urealyticum
serovar 10 str. ATCC 33699]
Length = 458
Score = 200 bits (508), Expect = 6e-49, Method: Composition-based stats.
Identities = 105/462 (22%), Positives = 201/462 (43%), Gaps = 39/462 (8%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E ++ A + I+ +V+ S++ ++ +K + + IN + G I+ FR L
Sbjct: 9 EFIEYFKDTAKQNEIELEVLSSIIKEAFEKTYLRTHPGE-NFETNINLKEGTINCFRNLV 67
Query: 68 VVEEVE----------NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117
VVE + + +I L AR + + IG + + DF + V +
Sbjct: 68 VVENEKAHNEDLETCLDDAVEILLDDARKINANAQIGDTIKQYISIDDFKSIEVGQIGSL 127
Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTV-------KRVEYGNVIVDLG---NSDGVIRR 167
+ QK+ E R +K + ++I V +R E V V+L + G + R
Sbjct: 128 LRQKITEIHNKRVADFWKPSLMKMIRAKVAEINYNKQRNEITGVKVELDDQWKTLGYLSR 187
Query: 168 DETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227
+ I E + G+ I +V+ + R VLLSRT P+ + ++ EV +I NG +++K
Sbjct: 188 KDRIGDEKFKVGETYDFIIKEVKEQSRLWPVLLSRTEPELVEEILKREVVDIKNGNIEIK 247
Query: 228 AVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFV 287
++R G + K+AV ++ +I+PV VG +G + ++ +L +E+ID++ ++ D F+
Sbjct: 248 KIARIAGFKTKVAVSTNLLNIEPVAVVVGNKGLTITSISKQLNNERIDVIRYADDKRIFI 307
Query: 288 INALRPAIVTKVVLDE---DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344
NA+ + +++ E D IV KE L IGR G N+RL +++T W ID+
Sbjct: 308 ANAIGLDKLKGLLVQENESDQRSAIAIVSKEDLPSVIGRGGANIRLIAKITEWNIDV--- 364
Query: 345 EEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404
K + + + DE I + + + +A I+ +E
Sbjct: 365 --------KTIEQAFEENVVYEKFDEKIYR---SWNIESINKKNVTNDEMLALIDNMQDE 413
Query: 405 TAVEIQGRAREYLEGIDITLQKKIRELGVSEELCS-IPGIDS 445
+ + + + T+ + +E + G +
Sbjct: 414 KVEKTEQVKDQLKQQEKQTIVSNNDDSENDDEQLEYLEGFED 455
>gi|171920965|ref|ZP_02696343.2| transcription termination factor NusA [Ureaplasma urealyticum
serovar 13 str. ATCC 33698]
gi|185179145|ref|ZP_02964862.1| transcription termination factor NusA [Ureaplasma urealyticum
serovar 5 str. ATCC 27817]
gi|188024249|ref|ZP_02996946.1| transcription termination factor NusA [Ureaplasma urealyticum
serovar 7 str. ATCC 27819]
gi|188518622|ref|ZP_03004069.1| transcription termination factor NusA [Ureaplasma urealyticum
serovar 11 str. ATCC 33695]
gi|188524495|ref|ZP_03004495.1| transcription termination factor NusA [Ureaplasma urealyticum
serovar 12 str. ATCC 33696]
gi|198273614|ref|ZP_03206149.1| transcription termination factor NusA [Ureaplasma urealyticum
serovar 4 str. ATCC 27816]
gi|225551589|ref|ZP_03772535.1| transcription termination factor NusA [Ureaplasma urealyticum
serovar 8 str. ATCC 27618]
gi|171902989|gb|EDT49278.1| transcription termination factor NusA [Ureaplasma urealyticum
serovar 13 str. ATCC 33698]
gi|184208924|gb|EDU05967.1| transcription termination factor NusA [Ureaplasma urealyticum
serovar 5 str. ATCC 27817]
gi|188018911|gb|EDU56951.1| transcription termination factor NusA [Ureaplasma urealyticum
serovar 7 str. ATCC 27819]
gi|188997862|gb|EDU66959.1| transcription termination factor NusA [Ureaplasma urealyticum
serovar 11 str. ATCC 33695]
gi|195659708|gb|EDX53088.1| transcription termination factor NusA [Ureaplasma urealyticum
serovar 12 str. ATCC 33696]
gi|198249642|gb|EDY74423.1| transcription termination factor NusA [Ureaplasma urealyticum
serovar 4 str. ATCC 27816]
gi|225379404|gb|EEH01769.1| transcription termination factor NusA [Ureaplasma urealyticum
serovar 8 str. ATCC 27618]
Length = 458
Score = 199 bits (507), Expect = 8e-49, Method: Composition-based stats.
Identities = 104/462 (22%), Positives = 201/462 (43%), Gaps = 39/462 (8%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E ++ A + I+ +V+ S++ ++ +K + + IN + G I+ FR L
Sbjct: 9 EFIEYFKDTAKQNEIELEVLSSIIKEAFEKTYLRTHPGE-NFETNINLKEGTINCFRNLV 67
Query: 68 VVEEVE----------NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117
VVE + + +I L AR + + IG + + DF + V +
Sbjct: 68 VVENEKAHNEDLETCLDDAVEILLDDARKINANAQIGDTIKQYILIDDFKSIEVGQIGSL 127
Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTV-------KRVEYGNVIVDLG---NSDGVIRR 167
+ QK+ E R +K + ++I V +R E V V+L + G + R
Sbjct: 128 LRQKITEIHNKRVADFWKPSLMKMIRAKVAEINYNKQRNEITGVKVELDDQWKTLGYLSR 187
Query: 168 DETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227
+ I E + G+ I +V+ + R VLLSRT P+ + ++ EV +I NG +++K
Sbjct: 188 KDRIGDEKFKVGETYDFIIKEVKEQSRLWPVLLSRTEPELVEEILKREVVDIKNGNIEIK 247
Query: 228 AVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFV 287
++R G + K+AV ++ +I+PV VG +G + ++ +L +E+ID++ ++ D F+
Sbjct: 248 KIARIAGFKTKVAVSTNLLNIEPVAVVVGNKGLTITSISKQLNNERIDVIRYADDKRIFI 307
Query: 288 INALRPAIVTKVVLDEDV---GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344
NA+ + +++ E+ IV KE L IGR G N+RL +++T W ID+
Sbjct: 308 ANAIGLDKLKGLLVQENESGQRSAIAIVSKEDLPSVIGRGGANIRLIAKITEWNIDV--- 364
Query: 345 EEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404
K + + + DE I + + + +A I+ +E
Sbjct: 365 --------KTIEQAFEENVVYEKFDEKIYR---SWNIESINKKNVTNDEMLALIDNMQDE 413
Query: 405 TAVEIQGRAREYLEGIDITLQKKIRELGVSEELCS-IPGIDS 445
+ + + + T+ + +E + G +
Sbjct: 414 KVEKTEQVKDQLKQQEKQTIVSNNDDSENDDEQLEYLEGFED 455
>gi|195867649|ref|ZP_03079651.1| transcription termination factor NusA [Ureaplasma urealyticum
serovar 9 str. ATCC 33175]
gi|195660706|gb|EDX53961.1| transcription termination factor NusA [Ureaplasma urealyticum
serovar 9 str. ATCC 33175]
Length = 460
Score = 199 bits (506), Expect = 9e-49, Method: Composition-based stats.
Identities = 104/462 (22%), Positives = 201/462 (43%), Gaps = 39/462 (8%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E ++ A + I+ +V+ S++ ++ +K + + IN + G I+ FR L
Sbjct: 11 EFIEYFKDTAKQNEIELEVLSSIIKEAFEKTYLRTHPGE-NFETNINLKEGTINCFRNLV 69
Query: 68 VVEEVE----------NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117
VVE + + +I L AR + + IG + + DF + V +
Sbjct: 70 VVENEKAHNEDLETCLDDAVEILLDDARKINANAQIGDTIKQYILIDDFKSIEVGQIGSL 129
Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTV-------KRVEYGNVIVDLG---NSDGVIRR 167
+ QK+ E R +K + ++I V +R E V V+L + G + R
Sbjct: 130 LRQKITEIHNKRVADFWKPSLMKMIRAKVAEINYNKQRNEITGVKVELDDQWKTLGYLSR 189
Query: 168 DETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227
+ I E + G+ I +V+ + R VLLSRT P+ + ++ EV +I NG +++K
Sbjct: 190 KDRIGDEKFKVGETYDFIIKEVKEQSRLWPVLLSRTEPELVEEILKREVVDIKNGNIEIK 249
Query: 228 AVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFV 287
++R G + K+AV ++ +I+PV VG +G + ++ +L +E+ID++ ++ D F+
Sbjct: 250 KIARIAGFKTKVAVSTNLLNIEPVAVVVGNKGLTITSISKQLNNERIDVIRYADDKRIFI 309
Query: 288 INALRPAIVTKVVLDEDV---GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344
NA+ + +++ E+ IV KE L IGR G N+RL +++T W ID+
Sbjct: 310 ANAIGLDKLKGLLVQENESGQRSAIAIVSKEDLPSVIGRGGANIRLIAKITEWNIDV--- 366
Query: 345 EEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404
K + + + DE I + + + +A I+ +E
Sbjct: 367 --------KTIEQAFEENVVYEKFDEKIYR---SWNIESINKKNVTNDEMLALIDNMQDE 415
Query: 405 TAVEIQGRAREYLEGIDITLQKKIRELGVSEELCS-IPGIDS 445
+ + + + T+ + +E + G +
Sbjct: 416 KVEKTEQVKDQLKQQEKQTIVSNNDDSENDDEQLEYLEGFED 457
>gi|256370754|ref|YP_003108579.1| transcription elongation factor NusA [Candidatus Sulcia muelleri
SMDSEM]
gi|256009546|gb|ACU52906.1| transcription elongation factor NusA [Candidatus Sulcia muelleri
SMDSEM]
Length = 342
Score = 198 bits (504), Expect = 2e-48, Method: Composition-based stats.
Identities = 90/324 (27%), Positives = 177/324 (54%), Gaps = 3/324 (0%)
Query: 28 LSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTCQISLKVAR 85
+S++ S + YG + + ++ N + G+I ++R L++V + ++N+ QI + A
Sbjct: 19 MSIIKKSFIFFLKKKYGKLKNYKIFFNYKNGEIEIWRDLKIVSDEIIKNFNKQIEISKAI 78
Query: 86 DRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGT 145
++ IG + + + G+ + S K+ + K ++ +R Q K K+GEII
Sbjct: 79 KIKKNLKIGDSLKEKIEYQQLGKKFLFSLKKDLFYKFKKFDRKNQLQILKKKIGEIIYAK 138
Query: 146 VKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTH 204
V + N+ + N+ ++ ++E I E + G+ I V+ + + LSR
Sbjct: 139 VDYIINDNIFFKNNENNKMILLKEEQIPNEKFKKGNSFFLLIKKVKFIKNKIYLFLSRKD 198
Query: 205 PQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQA 264
F+ KL +E+PEI NG++ +K + R G R+K+A+ S + +IDP+G CVG++GS+++
Sbjct: 199 KNFLKKLLELEIPEISNGLIIIKKIVRIAGERSKIAIKSKNKTIDPIGTCVGLKGSKLKN 258
Query: 265 VVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRR 324
++ E+ +E IDI+ +S + ++ ++ PA V + +D + V E++ AIG +
Sbjct: 259 IIKEINNEIIDIINYSSNIELYLTRSISPAKVAMIKIDRKKKLAFISVNSEEIKKAIGNK 318
Query: 325 GQNVRLASQLTGWTIDIITEEEDS 348
N+RLAS+LTG+ I I+ ++ +
Sbjct: 319 KTNLRLASKLTGYKIYILNIKKKN 342
>gi|225550916|ref|ZP_03771865.1| transcription termination factor NusA [Ureaplasma urealyticum
serovar 2 str. ATCC 27814]
gi|225380070|gb|EEH02432.1| transcription termination factor NusA [Ureaplasma urealyticum
serovar 2 str. ATCC 27814]
Length = 458
Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats.
Identities = 104/462 (22%), Positives = 200/462 (43%), Gaps = 39/462 (8%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E ++ A + I+ +V+ S++ ++ +K + + IN + G I+ FR L
Sbjct: 9 EFIEYFKDTAKQNEIELEVLSSIIKEAFEKTYLRTHPGE-NFETNINLKEGTINCFRNLV 67
Query: 68 VVEEVE----------NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117
VVE + + +I L AR + + IG + + DF + V +
Sbjct: 68 VVENEKAHNEDLETCLDDAVEILLDDARKINANAQIGDTIKQRISIDDFKSIEVGQIGSL 127
Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTV-------KRVEYGNVIVDLG---NSDGVIRR 167
+ QK+ E R +K + ++I V +R E V V+L + G +
Sbjct: 128 LRQKITEIHNKRVADFWKPSLMKMIRAKVAEINYNKQRNEITGVKVELDDQWKTLGYLSC 187
Query: 168 DETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227
+ I E + G+ I +V+ + R VLLSRT P+ + ++ EV +I NG +++K
Sbjct: 188 KDRIGDEKFKVGETYDFIIKEVKEQSRLWPVLLSRTEPELVEEILKREVVDIKNGNIEIK 247
Query: 228 AVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFV 287
++R G + K+AV ++ +I+PV VG +G + ++ +L +E+ID++ ++ D F+
Sbjct: 248 KIARIAGFKTKVAVSTNLLNIEPVAVVVGNKGLTITSISKQLNNERIDVIRYADDKRIFI 307
Query: 288 INALRPAIVTKVVLDEDV---GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344
NA+ + +++ E+ IV KE L IGR G N+RL +++T W ID+
Sbjct: 308 ANAIGLDKLKGLLVQENESGQRSAIAIVSKEDLPSVIGRGGANIRLIAKITEWNIDV--- 364
Query: 345 EEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404
K + + + DE I + + + +A I+ +E
Sbjct: 365 --------KTIEQAFEENVVYEKFDEKIYR---SWNIESINKKNVTNDEMLALIDNMQDE 413
Query: 405 TAVEIQGRAREYLEGIDITLQKKIRELGVSEELCS-IPGIDS 445
E + + + T+ + +E + G +
Sbjct: 414 KVDENEQVNHQLKQQEKQTIDSNNDDSENDDEQLEYLEGFED 455
>gi|312601531|gb|ADQ90786.1| Transcription termination-antitermination factor nusA [Mycoplasma
hyopneumoniae 168]
Length = 614
Score = 196 bits (498), Expect = 8e-48, Method: Composition-based stats.
Identities = 84/366 (22%), Positives = 163/366 (44%), Gaps = 20/366 (5%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
++Q VA ++ + V+ + ++I+ + I++E + E +F +
Sbjct: 20 IIQAIQDVAKNSELNLEAVIDIFQEAIEFVITKKIDPDAQIKIEADLEQLSFKVFNTNGI 79
Query: 69 V------------EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116
V E+V + I L A++ DP I + + S + F +
Sbjct: 80 VVEENYFDDLTDEEKVNDLVSFILLSKAKETDPEIQVDDIFSIEINLESFEHWLFMAIMH 139
Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV-IRRDETISREN 175
QK+ E R+ Y ++ ++ TV I ++ + S +N
Sbjct: 140 AFKQKISEIVRNNVYNKYLSLKNNVVLATVTNKIAAGYIFEIDDDKVSAFMPSHYASGQN 199
Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235
L+ G + + I +V + + QV++S Q + K +PE+ + +++ +++R PG
Sbjct: 200 LKIGTKHEVVIENVSKNTKQSQVVISSKSVQLVKKKIIDAIPELQSKFLEITSIARIPGE 259
Query: 236 RAKLAVFSSD----SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINAL 291
R K+A+ ++ +I +G+ VG GSRV A+ EL+ EKI+++ + + F++NA+
Sbjct: 260 RCKVAIRRTEGAEADNISEIGSIVGATGSRVLAISQELQGEKIEVIKYDDNIVKFIVNAM 319
Query: 292 RPAIVTK---VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
P+ V + + R V+VP Q SLAIG+ G NV+L + LT + II
Sbjct: 320 SPSKVICVKEFKIGHKLRRFIVVVPDFQHSLAIGKNGSNVKLVADLTRCQVQIIPYSSAL 379
Query: 349 INRQKD 354
++
Sbjct: 380 KDQNFK 385
>gi|144227706|gb|AAZ44670.2| N-utilization substance protein A [Mycoplasma hyopneumoniae J]
Length = 614
Score = 195 bits (497), Expect = 1e-47, Method: Composition-based stats.
Identities = 84/366 (22%), Positives = 163/366 (44%), Gaps = 20/366 (5%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
++Q VA ++ + V+ + ++I+ + I++E + E +F +
Sbjct: 20 IIQAIQDVAKNSELNLEAVIDIFQEAIEFVITKKIDPDAQIKIEADLEQLSFKVFNTNGI 79
Query: 69 V------------EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116
V E+V + I L A++ DP I + + S + F +
Sbjct: 80 VVEENYFDDLTDEEKVNDLVSFILLSKAKETDPEIQVDDIFSIEINLESFEHWLFMAIMH 139
Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV-IRRDETISREN 175
QK+ E R+ Y ++ ++ TV I ++ + S +N
Sbjct: 140 AFKQKISEIVRNNVYNKYLSLKNNVVLATVTNKIAAGYIFEIDDDKVSAFMPSHYASGQN 199
Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235
L+ G + + I +V + + QV++S Q + K +PE+ + +++ +++R PG
Sbjct: 200 LKIGTKHEVVIENVSKNTKQSQVVISSKSVQLVKKKIIDAIPELQSKFLEITSIARIPGE 259
Query: 236 RAKLAVFSSD----SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINAL 291
R K+A+ ++ +I +G+ VG GSRV A+ EL+ EKI+++ + + F++NA+
Sbjct: 260 RCKVAIRRNEDAEADNISEIGSIVGATGSRVLAISQELQGEKIEVIKYDDNIVKFIVNAM 319
Query: 292 RPAIVTK---VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
P+ V + + R V+VP Q SLAIG+ G NV+L + LT + II
Sbjct: 320 SPSKVICVKEFKIGHKLRRFIVVVPDFQHSLAIGKNGSNVKLVADLTRCQVQIIPYSSAL 379
Query: 349 INRQKD 354
++
Sbjct: 380 KDQNFK 385
>gi|71893935|ref|YP_279381.1| transcription elongation factor NusA [Mycoplasma hyopneumoniae J]
Length = 617
Score = 195 bits (497), Expect = 1e-47, Method: Composition-based stats.
Identities = 84/366 (22%), Positives = 163/366 (44%), Gaps = 20/366 (5%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
++Q VA ++ + V+ + ++I+ + I++E + E +F +
Sbjct: 23 IIQAIQDVAKNSELNLEAVIDIFQEAIEFVITKKIDPDAQIKIEADLEQLSFKVFNTNGI 82
Query: 69 V------------EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116
V E+V + I L A++ DP I + + S + F +
Sbjct: 83 VVEENYFDDLTDEEKVNDLVSFILLSKAKETDPEIQVDDIFSIEINLESFEHWLFMAIMH 142
Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV-IRRDETISREN 175
QK+ E R+ Y ++ ++ TV I ++ + S +N
Sbjct: 143 AFKQKISEIVRNNVYNKYLSLKNNVVLATVTNKIAAGYIFEIDDDKVSAFMPSHYASGQN 202
Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235
L+ G + + I +V + + QV++S Q + K +PE+ + +++ +++R PG
Sbjct: 203 LKIGTKHEVVIENVSKNTKQSQVVISSKSVQLVKKKIIDAIPELQSKFLEITSIARIPGE 262
Query: 236 RAKLAVFSSD----SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINAL 291
R K+A+ ++ +I +G+ VG GSRV A+ EL+ EKI+++ + + F++NA+
Sbjct: 263 RCKVAIRRNEDAEADNISEIGSIVGATGSRVLAISQELQGEKIEVIKYDDNIVKFIVNAM 322
Query: 292 RPAIVTK---VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
P+ V + + R V+VP Q SLAIG+ G NV+L + LT + II
Sbjct: 323 SPSKVICVKEFKIGHKLRRFIVVVPDFQHSLAIGKNGSNVKLVADLTRCQVQIIPYSSAL 382
Query: 349 INRQKD 354
++
Sbjct: 383 KDQNFK 388
>gi|195953996|ref|YP_002122286.1| transcription elongation factor NusA [Hydrogenobaculum sp. Y04AAS1]
gi|195933608|gb|ACG58308.1| NusA antitermination factor [Hydrogenobaculum sp. Y04AAS1]
Length = 322
Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats.
Identities = 110/345 (31%), Positives = 190/345 (55%), Gaps = 30/345 (8%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ ++ + VA EK I +V + ++I R IR +I ++
Sbjct: 5 IKKLIENVAKEKDIPAKIVEIALKNAIAYGIRK----EKHIRGKI-----------YIDF 49
Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128
++ IS + D + D R+A +AK+ ++++ AER+
Sbjct: 50 ADDDTITAYIISGREKTKLD------------ISTEDLNRIAAYAAKEEFLKELENAERE 97
Query: 129 RQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187
R +LE+ + G I+ G V+ + IVDLG D + R E IS+E+ + DRVK+ ++
Sbjct: 98 RGFLEYVSQEGNIVHGIVREITKDQTAIVDLGPIDAELPRREQISKESFKKNDRVKALLF 157
Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247
V++E+ P +LLSRTHP+F+ +L E+PE+ G+V++ +V+R+PG +AK+ V + D
Sbjct: 158 SVQKERGRPVLLLSRTHPKFLRRLLEAEIPEVATGLVKIISVAREPGEKAKVVVDTEDKK 217
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
IDPVG +G++GS++ + EL E ID+V +S D F+ N PA + + + E +
Sbjct: 218 IDPVGVVIGIKGSKINPISKELAGEHIDVVRYSKDKKKFLENLFFPAKI--LDVRESDNQ 275
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352
IEV V K+Q+SLAIG+RG N +LA ++ G ID++++E+ ++
Sbjct: 276 IEVAVDKDQISLAIGKRGINTKLAYKILGKHIDVMSKEDFDKLKK 320
>gi|54020616|ref|YP_116111.1| transcription elongation factor NusA [Mycoplasma hyopneumoniae 232]
gi|53987789|gb|AAV27990.1| transcription termination-antitermination factor nusA [Mycoplasma
hyopneumoniae 232]
Length = 614
Score = 194 bits (493), Expect = 3e-47, Method: Composition-based stats.
Identities = 83/366 (22%), Positives = 162/366 (44%), Gaps = 20/366 (5%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
++Q VA ++ + V+ + ++I+ + I++E + E +F +
Sbjct: 20 IIQAIQDVAKNSELNLEAVIDIFQEAIEFVITKKIDPDAQIKIEADLEQLSFKVFNTNGI 79
Query: 69 V------------EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116
V E+V + I L A++ DP I + + S + F +
Sbjct: 80 VVEENYFDDLTDEEKVNDLVSFILLSKAKETDPEIQVDDIFSIEINLESFEHWLFMAIMH 139
Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV-IRRDETISREN 175
QK+ E R+ Y ++ ++ TV I ++ + S +N
Sbjct: 140 AFKQKISEIVRNNVYNKYLSLKNNVVLATVTNKIAAGYIFEIDDDKVSAFMPSHYASGQN 199
Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235
L+ G + + I +V + + QV++S Q + K +PE+ + +++ +++R PG
Sbjct: 200 LKIGTKHEVVIENVSKNTKQSQVVISSKSVQLVKKKIIDAIPELQSKFLEITSIARIPGE 259
Query: 236 RAKLAVFSSD----SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINAL 291
R K+A+ ++ +I +G+ VG GSRV A+ EL+ EKI+++ + + F++NA+
Sbjct: 260 RCKVAIRRTEGAEADNISEIGSIVGATGSRVLAISQELQGEKIEVIKYDDNIVKFIVNAM 319
Query: 292 RPAIVTK---VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
P+ V + + R V+V Q SLAIG+ G NV+L + LT + II
Sbjct: 320 SPSKVICVKEFKIGHKLRRFIVVVTDFQHSLAIGKNGSNVKLVADLTRCQVQIIPYSSAL 379
Query: 349 INRQKD 354
++
Sbjct: 380 KDQNFK 385
>gi|72080914|ref|YP_287972.1| transcription elongation factor NusA [Mycoplasma hyopneumoniae
7448]
Length = 617
Score = 194 bits (493), Expect = 3e-47, Method: Composition-based stats.
Identities = 83/366 (22%), Positives = 163/366 (44%), Gaps = 20/366 (5%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
++Q VA ++ + V+ + ++I+ + I++E + E +F +
Sbjct: 23 IIQAIQDVAKNSELNLEAVIDIFQEAIEFVITKKIDPDAQIKIEADLEQLSFKVFNTNGI 82
Query: 69 V------------EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116
V E+V + I L A++ DP I + + S + F +
Sbjct: 83 VVEENYFDDLTDEEKVNDLVSFILLSKAKETDPEIQVDDIFSIEINLESFEHWLFMAIMH 142
Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV-IRRDETISREN 175
QK+ E R+ Y ++ ++ TV I ++ + S +N
Sbjct: 143 AFKQKISEIVRNNVYNKYLSLKNNVVLATVTNKIAAGYIFEIDDDKVSAFMPSHYASGQN 202
Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235
L+ G + + I +V + + QV++S Q + K +PE+ + +++ +++R PG
Sbjct: 203 LKIGTKHEVVIENVSKNTKQSQVVISSKSVQLVKKKIIDAIPELQSKFLEITSIARIPGE 262
Query: 236 RAKLAVFSSD----SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINAL 291
R K+A+ ++ +I +G+ VG GSRV A+ EL+ EKI+++ + + F++NA+
Sbjct: 263 RCKVAIRRTEDAEADNISEIGSIVGATGSRVLAISQELQGEKIEVIKYDDNIVKFIVNAM 322
Query: 292 RPAIVTK---VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
P+ V + + R ++VP Q SLAIG+ G NV+L + LT + II
Sbjct: 323 SPSKVICVKEFKIGHKLRRFIIVVPDFQHSLAIGKNGSNVKLVADLTRCQVQIIPYSSAL 382
Query: 349 INRQKD 354
++
Sbjct: 383 KDQNFK 388
>gi|144575534|gb|AAZ53949.2| N-utilization substance protein A [Mycoplasma hyopneumoniae 7448]
Length = 614
Score = 194 bits (493), Expect = 3e-47, Method: Composition-based stats.
Identities = 83/366 (22%), Positives = 163/366 (44%), Gaps = 20/366 (5%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
++Q VA ++ + V+ + ++I+ + I++E + E +F +
Sbjct: 20 IIQAIQDVAKNSELNLEAVIDIFQEAIEFVITKKIDPDAQIKIEADLEQLSFKVFNTNGI 79
Query: 69 V------------EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116
V E+V + I L A++ DP I + + S + F +
Sbjct: 80 VVEENYFDDLTDEEKVNDLVSFILLSKAKETDPEIQVDDIFSIEINLESFEHWLFMAIMH 139
Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV-IRRDETISREN 175
QK+ E R+ Y ++ ++ TV I ++ + S +N
Sbjct: 140 AFKQKISEIVRNNVYNKYLSLKNNVVLATVTNKIAAGYIFEIDDDKVSAFMPSHYASGQN 199
Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235
L+ G + + I +V + + QV++S Q + K +PE+ + +++ +++R PG
Sbjct: 200 LKIGTKHEVVIENVSKNTKQSQVVISSKSVQLVKKKIIDAIPELQSKFLEITSIARIPGE 259
Query: 236 RAKLAVFSSD----SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINAL 291
R K+A+ ++ +I +G+ VG GSRV A+ EL+ EKI+++ + + F++NA+
Sbjct: 260 RCKVAIRRTEDAEADNISEIGSIVGATGSRVLAISQELQGEKIEVIKYDDNIVKFIVNAM 319
Query: 292 RPAIVTK---VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
P+ V + + R ++VP Q SLAIG+ G NV+L + LT + II
Sbjct: 320 SPSKVICVKEFKIGHKLRRFIIVVPDFQHSLAIGKNGSNVKLVADLTRCQVQIIPYSSAL 379
Query: 349 INRQKD 354
++
Sbjct: 380 KDQNFK 385
>gi|15612472|ref|NP_224125.1| transcription elongation factor NusA [Helicobacter pylori J99]
gi|11387009|sp|Q9ZJA6|NUSA_HELPJ RecName: Full=Transcription elongation protein nusA
gi|4156020|gb|AAD06980.1| N-UTILIZATION SUBSTANCE PROTEIN A [Helicobacter pylori J99]
Length = 395
Score = 194 bits (492), Expect = 5e-47, Method: Composition-based stats.
Identities = 98/361 (27%), Positives = 186/361 (51%), Gaps = 31/361 (8%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV
Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVEV 61
Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+E+ V + + ISL A++ DPS+ I +S L + A+ + + ++
Sbjct: 62 LEDDDERLVNDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
+A D + F+ ++ ++ G V V++ N +++ GV+ I E+ + GD
Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDHNQNTFIEIEQQFQGVLSMRHRIKGESFKIGDS 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++
Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298
FS +S IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA +
Sbjct: 242 FSHNSRIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301
Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
+++ + + +V + + S AIG+ G NV LAS LTG+ I
Sbjct: 302 KKIPIEELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361
Query: 340 D 340
+
Sbjct: 362 E 362
>gi|317011648|gb|ADU85395.1| transcription elongation factor NusA [Helicobacter pylori
SouthAfrica7]
Length = 395
Score = 193 bits (491), Expect = 5e-47, Method: Composition-based stats.
Identities = 97/361 (26%), Positives = 186/361 (51%), Gaps = 31/361 (8%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV
Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVI--EENKQLQLIQLVEV 61
Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+E+ V + + ISL A++ DPS+ I +S L + A+ + + ++
Sbjct: 62 LEDDDERLVNDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNS-DGVIRRDETISRENLRPGDR 181
+A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD
Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDNHQNTFIEIEQQFQGVLSMRHRIKGESFKIGDS 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++
Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298
FS+++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA +
Sbjct: 242 FSNNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301
Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
+++ + + +V + + S AIG+ G NV LAS LTG+ I
Sbjct: 302 KKIPIEELSTEEKESIQERFIVNNHLQKAKVRLLDTEKSKAIGKGGVNVCLASMLTGYHI 361
Query: 340 D 340
+
Sbjct: 362 E 362
>gi|217031863|ref|ZP_03437366.1| hypothetical protein HPB128_199g71 [Helicobacter pylori B128]
gi|298735514|ref|YP_003728035.1| N utilization substance protein A [Helicobacter pylori B8]
gi|216946515|gb|EEC25117.1| hypothetical protein HPB128_199g71 [Helicobacter pylori B128]
gi|298354699|emb|CBI65571.1| N utilization substance protein A [Helicobacter pylori B8]
Length = 395
Score = 193 bits (491), Expect = 5e-47, Method: Composition-based stats.
Identities = 96/361 (26%), Positives = 186/361 (51%), Gaps = 31/361 (8%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV
Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVEV 61
Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+E+ + + + ISL A++ DPS+ I +S L + A+ + + ++
Sbjct: 62 LEDGDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
+A D + F+ ++ ++ G V V++ N +++ GV+ I E+ + GD
Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDHNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDS 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++
Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298
FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA +
Sbjct: 242 FSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEV 301
Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
+++ + + +V + + S AIG+ G NV LAS LTG+ I
Sbjct: 302 KKIPIEELSAEEKESVQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361
Query: 340 D 340
+
Sbjct: 362 E 362
>gi|254780024|ref|YP_003058131.1| transcription elongation factor NusA [Helicobacter pylori B38]
gi|254001937|emb|CAX30190.1| Transcription elongation protein NusA [Helicobacter pylori B38]
Length = 395
Score = 192 bits (488), Expect = 1e-46, Method: Composition-based stats.
Identities = 97/361 (26%), Positives = 185/361 (51%), Gaps = 31/361 (8%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV
Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVEV 61
Query: 69 VEEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+E+ + + + ISL A++ DPS+ I +S L + A+ + + ++
Sbjct: 62 LEDDDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
+A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD
Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDSNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDS 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++
Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298
FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA +
Sbjct: 242 FSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301
Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
V++ + + +V + + S AIG+ G NV LAS LTG+ I
Sbjct: 302 KKIPIEELSAEEKESIQERFVVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361
Query: 340 D 340
+
Sbjct: 362 E 362
>gi|261840189|gb|ACX99954.1| transcription elongation factor NusA [Helicobacter pylori 52]
Length = 395
Score = 192 bits (487), Expect = 2e-46, Method: Composition-based stats.
Identities = 100/381 (26%), Positives = 192/381 (50%), Gaps = 31/381 (8%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV
Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLAHYLVI--EENKQLQLIQLVEV 61
Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+E+ V + + ISL A++ DPS+ I +S L + A+ + + ++
Sbjct: 62 LEDGDERLVNDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
+A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD
Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDNNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDS 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K+ + ++R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++
Sbjct: 182 IKAVLTQIKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298
FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA +
Sbjct: 242 FSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301
Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
+++ + + +V + + S AIG+ G NV LAS LTG+ I
Sbjct: 302 KKIPIEELNTEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361
Query: 340 DIITEEEDSINRQKDFNERTQ 360
+ T N + + + TQ
Sbjct: 362 EFETIPSVKENAENESEKETQ 382
>gi|307638171|gb|ADN80621.1| Transcription termination protein [Helicobacter pylori 908]
Length = 395
Score = 192 bits (487), Expect = 2e-46, Method: Composition-based stats.
Identities = 98/361 (27%), Positives = 185/361 (51%), Gaps = 31/361 (8%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV
Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYSVV--EENKQLQLIQLVEV 61
Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+E+ V + + ISL A++ DPS+ I +S L + A+ + + ++
Sbjct: 62 LEDDDERLVNDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
+A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD
Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDKNQNTFIEIEQQFQGVLSMRHRIKGESFKIGDS 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++
Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298
FS +S IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA +
Sbjct: 242 FSHNSRIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEV 301
Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
+++ + + +V + + S AIG+ G NV LAS LTG+ I
Sbjct: 302 KKIPIEELNAEEKESVQERFIVNNHLQKAKVRLLDVEKSKAIGKGGVNVCLASMLTGYHI 361
Query: 340 D 340
+
Sbjct: 362 E 362
>gi|317014930|gb|ADU82366.1| transcription elongation factor NusA [Helicobacter pylori
Gambia94/24]
Length = 395
Score = 191 bits (486), Expect = 2e-46, Method: Composition-based stats.
Identities = 98/361 (27%), Positives = 186/361 (51%), Gaps = 31/361 (8%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV
Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYSVI--EENKQLQLIQLVEV 61
Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+E+ V + + ISL A++ DPS+ I +S L + A+ + + ++
Sbjct: 62 LEDDDERLVNDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
+A D + F+ ++ ++ G V V++ N +++ GV+ I E+ + GD
Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDHNQNTFIEIEQQFQGVLSMRHRIKGESFKIGDS 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++
Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298
FS +S IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA +
Sbjct: 242 FSHNSRIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEV 301
Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
+++ + + +V + + S AIG+ G NV LAS LTG+ I
Sbjct: 302 KKIPIEELSAEEKESVQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361
Query: 340 D 340
+
Sbjct: 362 E 362
>gi|325996770|gb|ADZ52175.1| Transcription termination protein [Helicobacter pylori 2018]
gi|325998365|gb|ADZ50573.1| Transcription termination protein [Helicobacter pylori 2017]
Length = 395
Score = 191 bits (486), Expect = 2e-46, Method: Composition-based stats.
Identities = 97/361 (26%), Positives = 184/361 (50%), Gaps = 31/361 (8%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV
Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYSVV--EENKQLQLIQLVEV 61
Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+E+ V + + ISL A++ DPS+ I +S L + A+ + + ++
Sbjct: 62 LEDDDERLVNDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
+A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD
Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDKNQNTFIEIEQQFQGVLSMRHRIKGESFKIGDS 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++
Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298
FS +S IDP+G VG++G R+ A+ EL E ID + +S ++ AL PA +
Sbjct: 242 FSHNSRIDPIGTAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEV 301
Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
+++ + + +V + + S AIG+ G NV LAS LTG+ I
Sbjct: 302 KKIPIEELNAEEKESVQERFIVNNHLQKAKVRLLDVEKSKAIGKGGVNVCLASMLTGYHI 361
Query: 340 D 340
+
Sbjct: 362 E 362
>gi|15646123|ref|NP_208305.1| transcription elongation factor NusA [Helicobacter pylori 26695]
gi|2499337|sp|P55977|NUSA_HELPY RecName: Full=Transcription elongation protein nusA
gi|2314694|gb|AAD08555.1| transcription termination factor NusA (nusA) [Helicobacter pylori
26695]
Length = 395
Score = 191 bits (485), Expect = 3e-46, Method: Composition-based stats.
Identities = 97/361 (26%), Positives = 186/361 (51%), Gaps = 31/361 (8%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV
Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVEV 61
Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+E+ V + + ISL A++ DPS+ I +S L + A+ + + ++
Sbjct: 62 LEDGDERLVNDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
+A D + F+ ++ ++ G V V++ N +++ GV+ I E+ + GD
Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDHNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDS 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++
Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298
FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA +
Sbjct: 242 FSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301
Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
+++ + + +V + + S AIG+ G NV LAS LTG+ I
Sbjct: 302 KKIPIEELNAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361
Query: 340 D 340
+
Sbjct: 362 E 362
>gi|188528283|ref|YP_001910970.1| transcription elongation factor NusA [Helicobacter pylori Shi470]
gi|188144523|gb|ACD48940.1| transcription elongation factor NusA [Helicobacter pylori Shi470]
Length = 395
Score = 190 bits (484), Expect = 3e-46, Method: Composition-based stats.
Identities = 100/381 (26%), Positives = 193/381 (50%), Gaps = 31/381 (8%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV
Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVEV 61
Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+E+ + + + ISL A++ DPS+ I +S L + A+ + + ++
Sbjct: 62 LEDGDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
+A D + F+ ++ ++ G V V++ N +++ GV+ I E+ + GD
Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDHNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDS 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++
Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298
FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA +
Sbjct: 242 FSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301
Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
+++ + + +V + + S AIG+ G NV LAS LTG+ I
Sbjct: 302 KKIPIGELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361
Query: 340 DIITEEEDSINRQKDFNERTQ 360
+ T N + + + TQ
Sbjct: 362 EFETIPSVKENAENESEKETQ 382
>gi|255024911|ref|ZP_05296897.1| transcription elongation factor NusA [Listeria monocytogenes FSL
J1-208]
Length = 180
Score = 190 bits (484), Expect = 3e-46, Method: Composition-based stats.
Identities = 83/180 (46%), Positives = 127/180 (70%)
Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181
VREAER Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR
Sbjct: 1 VREAERGIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDR 60
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K Y+ V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V
Sbjct: 61 IKVYLTKVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISV 120
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301
++++ +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V++
Sbjct: 121 YTANEEVDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIV 180
>gi|317179693|dbj|BAJ57481.1| transcription elongation factor NusA [Helicobacter pylori F30]
Length = 395
Score = 190 bits (484), Expect = 4e-46, Method: Composition-based stats.
Identities = 100/381 (26%), Positives = 192/381 (50%), Gaps = 31/381 (8%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV
Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLAHYLVV--EENKQLQLIQLVEV 61
Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+E+ + + + ISL A++ DPS+ I +S L + + A+ + + ++
Sbjct: 62 LEDGDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLENMKQGAINRLFKDLQYQLE 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNS-DGVIRRDETISRENLRPGDR 181
+A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD
Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDNHQNTFIEIEQQFQGVLSMRHRIKGESFKVGDS 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ R PG+RAK++
Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCVRIPGNRAKVSF 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298
FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA +
Sbjct: 242 FSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301
Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
+++ + + +V + + S AIG+ G NV LAS LTG+ I
Sbjct: 302 KKIPIEELNAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361
Query: 340 DIITEEEDSINRQKDFNERTQ 360
+ T N + + + TQ
Sbjct: 362 EFETIPSVKENAENESEKETQ 382
>gi|82407871|pdb|2ASB|A Chain A, Structure Of A Mycobacterium Tuberculosis Nusa-Rna Complex
gi|82407889|pdb|2ATW|A Chain A, Structure Of A Mycobacterium Tuberculosis Nusa-Rna Complex
gi|82407891|pdb|2ATW|C Chain C, Structure Of A Mycobacterium Tuberculosis Nusa-Rna Complex
Length = 251
Score = 190 bits (483), Expect = 4e-46, Method: Composition-based stats.
Identities = 100/244 (40%), Positives = 143/244 (58%), Gaps = 9/244 (3%)
Query: 133 EFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDRVKS 184
EF + GEI++G ++R N V+V +G S+GVI E + E+ G+R++
Sbjct: 2 EFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRC 61
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV S+
Sbjct: 62 YVVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSN 121
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDE 303
+ ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V +D+
Sbjct: 122 VAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQ 181
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
V+VP QLSLAIG+ GQN RLA++LTGW IDI + Q +
Sbjct: 182 TARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMAH 241
Query: 364 QAIN 367
+
Sbjct: 242 DRLE 245
>gi|317178222|dbj|BAJ56011.1| transcription elongation factor NusA [Helicobacter pylori F16]
Length = 395
Score = 190 bits (483), Expect = 5e-46, Method: Composition-based stats.
Identities = 101/381 (26%), Positives = 192/381 (50%), Gaps = 31/381 (8%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ + + +AYEK++ +++V V+ + K A++ ++ V E + L +L+EV
Sbjct: 4 ISDLIECIAYEKNLPKEMVSKVIQGCLLKMAQNELDPLARYLVI--EENKQLQLIQLVEV 61
Query: 69 VEEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+E+ + + + ISL A++ DPS+ I +S L + A+ + + ++
Sbjct: 62 LEDDDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNS-DGVIRRDETISRENLRPGDR 181
+A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD
Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDNHQNTFIEIEQQFQGVLSMRHRIKGESFKVGDS 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++
Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298
FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA +
Sbjct: 242 FSHNTRIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301
Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
+++ + + +V + + S AIG+ G NV LAS LTG+ I
Sbjct: 302 KKIPIEELSAKEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361
Query: 340 DIITEEEDSINRQKDFNERTQ 360
+ T N + + + TQ
Sbjct: 362 EFETIPSVKENAENESEKETQ 382
>gi|261838788|gb|ACX98554.1| transcription termination factor A [Helicobacter pylori 51]
Length = 395
Score = 190 bits (482), Expect = 6e-46, Method: Composition-based stats.
Identities = 100/381 (26%), Positives = 192/381 (50%), Gaps = 31/381 (8%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV
Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLAHYLVI--EENKQLQLIQLVEV 61
Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+E+ + + + ISL A++ DPS+ I +S L + A+ + + ++
Sbjct: 62 LEDGDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
+A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD
Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDNNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDS 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++
Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298
FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA +
Sbjct: 242 FSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301
Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
+++ + + +V + + S AIG+ G NV LAS LTG+ I
Sbjct: 302 KKILIEELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361
Query: 340 DIITEEEDSINRQKDFNERTQ 360
+ T N + + + TQ
Sbjct: 362 EFETIPSVKENAENESEKETQ 382
>gi|108563823|ref|YP_628139.1| transcription elongation factor NusA [Helicobacter pylori HPAG1]
gi|107837596|gb|ABF85465.1| transcription termination factor [Helicobacter pylori HPAG1]
Length = 395
Score = 189 bits (481), Expect = 7e-46, Method: Composition-based stats.
Identities = 100/381 (26%), Positives = 193/381 (50%), Gaps = 31/381 (8%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV
Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVEV 61
Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+E+ + + + ISL A++ DPS+ I +S L + A+ + + ++
Sbjct: 62 LEDNDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
+A D + F+ ++ ++ G V V++ N +++ GV+ I E+ + GD
Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDHNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDS 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++
Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298
FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA +
Sbjct: 242 FSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEV 301
Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
+++ + + +V + + S AIG+ G NV LAS LTG+ I
Sbjct: 302 KKIPIEELNAEEKESVQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361
Query: 340 DIITEEEDSINRQKDFNERTQ 360
+ T N + + + TQ
Sbjct: 362 EFETIPSVKENAENESEKETQ 382
>gi|317013286|gb|ADU83894.1| transcription elongation factor NusA [Helicobacter pylori
Lithuania75]
Length = 395
Score = 189 bits (481), Expect = 7e-46, Method: Composition-based stats.
Identities = 100/381 (26%), Positives = 192/381 (50%), Gaps = 31/381 (8%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV
Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVEV 61
Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+E+ + + + ISL A++ DPS+ I +S L + A+ + + ++
Sbjct: 62 LEDGDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
+A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD
Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDSNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDS 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++
Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298
FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA +
Sbjct: 242 FSHNARIDPIGATVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301
Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
+++ + + +V + + S AIG+ G NV LAS LTG+ I
Sbjct: 302 KKIPIEELNAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361
Query: 340 DIITEEEDSINRQKDFNERTQ 360
+ T N + + + TQ
Sbjct: 362 EFETIPSVKENAENESEKETQ 382
>gi|148925839|ref|ZP_01809526.1| transcription termination factor [Campylobacter jejuni subsp.
jejuni CG8486]
gi|145844825|gb|EDK21929.1| transcription termination factor [Campylobacter jejuni subsp.
jejuni CG8486]
Length = 300
Score = 189 bits (481), Expect = 7e-46, Method: Composition-based stats.
Identities = 93/291 (31%), Positives = 156/291 (53%), Gaps = 4/291 (1%)
Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138
I+L A+ P ++IG ++ + GR AV + + + +++ + ++K+KV
Sbjct: 13 IALSKAKSEAPDVEIGDELTYECSLENLGRTAVNTLHKELEYHIQKLLEQTIFEKYKNKV 72
Query: 139 GEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197
G+++ GTV RV+ N +++ + R I E + GD VK+ I V +G +
Sbjct: 73 GQMVFGTVVRVDNEENTFIEIDELRAFLPRKNRIKGEKFKIGDVVKAVIRRVYT-DKGIK 131
Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGM 257
+ LSRT P+F+ L EVPEI +G V + +R PG RAK+ + ++ ++IDPVGA VG+
Sbjct: 132 IELSRTSPKFLECLLEAEVPEIKDGYVNIIGCARIPGERAKIILQANGANIDPVGATVGV 191
Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQL 317
+G R+ AV EL +E ID + ++ +S + AL PAIV V + + + V + EQ
Sbjct: 192 KGVRINAVSKELHNENIDCIEFTNESEILISRALAPAIVNSVKI--EDKKAIVSLNSEQK 249
Query: 318 SLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368
S AIG+ G N+RLAS L+G+ I++ +N E + +
Sbjct: 250 SKAIGKNGINIRLASMLSGYEIELNELSSSQLNNAISNEEAMKNLQDLFKI 300
>gi|208435381|ref|YP_002267047.1| transcription termination factor [Helicobacter pylori G27]
gi|208433310|gb|ACI28181.1| transcription termination factor [Helicobacter pylori G27]
Length = 395
Score = 189 bits (481), Expect = 8e-46, Method: Composition-based stats.
Identities = 96/361 (26%), Positives = 186/361 (51%), Gaps = 31/361 (8%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV
Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVEV 61
Query: 69 VEEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+E+ + + + ISL A++ DPS+ I +S L + A+ + + ++
Sbjct: 62 LEDDDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
+A D + F+ ++ ++ G V V++ N +++ GV+ I E+ + GD
Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDHNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDS 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++
Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298
FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA +
Sbjct: 242 FSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301
Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
+++ + + +V + + S AIG+ G NV LAS LTG+ I
Sbjct: 302 KKIPIEELNAEEKESVQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361
Query: 340 D 340
+
Sbjct: 362 E 362
>gi|218661268|ref|ZP_03517198.1| transcription elongation factor NusA [Rhizobium etli IE4771]
Length = 189
Score = 189 bits (481), Expect = 8e-46, Method: Composition-based stats.
Identities = 140/189 (74%), Positives = 163/189 (86%)
Query: 208 MVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVT 267
MVKLF MEVPEIY+GI+QVK+V+RDPGSRAK+AV S+DSSIDPVGACVGMRGSRVQAVV
Sbjct: 1 MVKLFTMEVPEIYDGIIQVKSVARDPGSRAKIAVISNDSSIDPVGACVGMRGSRVQAVVG 60
Query: 268 ELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQN 327
EL+ EKIDI+ WS D ATFV+NAL+PA V KVVLDED RIEV+VP EQLSLAIGRRGQN
Sbjct: 61 ELQGEKIDIIPWSQDPATFVVNALQPAEVAKVVLDEDAERIEVVVPDEQLSLAIGRRGQN 120
Query: 328 VRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEEL 387
VRLASQLTGW IDI+TE E+S RQK+FNERT FM +++VDE++ +L +EGFA VEEL
Sbjct: 121 VRLASQLTGWDIDIMTEAEESERRQKEFNERTNLFMDSLDVDEMVGQVLASEGFAAVEEL 180
Query: 388 ACVKISEIA 396
A V + EI+
Sbjct: 181 AYVDLDEIS 189
>gi|308062778|gb|ADO04666.1| transcription elongation factor NusA [Helicobacter pylori Cuz20]
Length = 395
Score = 189 bits (480), Expect = 9e-46, Method: Composition-based stats.
Identities = 100/381 (26%), Positives = 192/381 (50%), Gaps = 31/381 (8%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV
Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVEV 61
Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+E+ + + + ISL A++ DPS+ I +S L + A+ + + ++
Sbjct: 62 LEDGDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
+A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD
Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDNNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDS 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++
Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298
FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA +
Sbjct: 242 FSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301
Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
+++ + + +V + + S AIG+ G NV LAS LTG+ I
Sbjct: 302 KKIPIEELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361
Query: 340 DIITEEEDSINRQKDFNERTQ 360
+ T N + + + TQ
Sbjct: 362 EFETIPSVKENAENESEKETQ 382
>gi|315585900|gb|ADU40281.1| transcription termination factor NusA [Helicobacter pylori 35A]
Length = 395
Score = 189 bits (480), Expect = 9e-46, Method: Composition-based stats.
Identities = 100/381 (26%), Positives = 192/381 (50%), Gaps = 31/381 (8%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV
Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVI--EENKQLQLIQLVEV 61
Query: 69 VEEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+E+ + + + ISL A++ DPS+ I +S L + A+ + + ++
Sbjct: 62 LEDDDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNS-DGVIRRDETISRENLRPGDR 181
+A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD
Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDNHQNTFIEIEQQFQGVLSMRHRIKGESFKVGDS 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++
Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298
FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA +
Sbjct: 242 FSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301
Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
+++ + + +V + + S AIG+ G NV LAS LTG+ I
Sbjct: 302 KKIPIEELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361
Query: 340 DIITEEEDSINRQKDFNERTQ 360
+ T N + + + TQ
Sbjct: 362 EFETIPSVKENAENESEKETQ 382
>gi|308183617|ref|YP_003927744.1| transcription elongation factor NusA [Helicobacter pylori PeCan4]
gi|308065802|gb|ADO07694.1| transcription elongation factor NusA [Helicobacter pylori PeCan4]
Length = 395
Score = 189 bits (480), Expect = 1e-45, Method: Composition-based stats.
Identities = 96/361 (26%), Positives = 186/361 (51%), Gaps = 31/361 (8%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV
Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVEV 61
Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+E+ + + + ISL A++ DPS+ I +S L + A+ + + ++
Sbjct: 62 LEDSDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
+A D + F+ ++ ++ G V V++ N +++ GV+ I E+ + GD
Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDHNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDS 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++
Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298
FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA +
Sbjct: 242 FSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301
Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
+++ + + +V + + S AIG+ G NV LAS LTG+ I
Sbjct: 302 KKIPIEELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361
Query: 340 D 340
+
Sbjct: 362 E 362
>gi|207092969|ref|ZP_03240756.1| transcription elongation factor NusA [Helicobacter pylori
HPKX_438_AG0C1]
Length = 387
Score = 189 bits (480), Expect = 1e-45, Method: Composition-based stats.
Identities = 100/381 (26%), Positives = 193/381 (50%), Gaps = 31/381 (8%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV
Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVEV 61
Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+E+ + + + ISL A++ DPS+ I +S L + + A+ + + ++
Sbjct: 62 LEDNDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLENMKQGAINRLFKDLQYQLE 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
+A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD
Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDSNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDS 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++
Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298
FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA +
Sbjct: 242 FSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301
Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
+++ + + +V + + S AIG+ G NV LAS LTG+ I
Sbjct: 302 KKIPIEELNAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361
Query: 340 DIITEEEDSINRQKDFNERTQ 360
+ T N + + + TQ
Sbjct: 362 EFETIPSVKENAENESEKETQ 382
>gi|297380632|gb|ADI35519.1| transcription termination factor NusA [Helicobacter pylori v225d]
Length = 395
Score = 189 bits (480), Expect = 1e-45, Method: Composition-based stats.
Identities = 100/381 (26%), Positives = 192/381 (50%), Gaps = 31/381 (8%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV
Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVEV 61
Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+E+ + + + ISL A++ DPS+ I +S L + A+ + + ++
Sbjct: 62 LEDNDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
+A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD
Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDNNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDS 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++
Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298
FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA +
Sbjct: 242 FSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301
Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
+++ + + +V + + S AIG+ G NV LAS LTG+ I
Sbjct: 302 KKIPIEELSAEEKESVQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361
Query: 340 DIITEEEDSINRQKDFNERTQ 360
+ T N + + + TQ
Sbjct: 362 EFETIPSIKENAENESEKETQ 382
>gi|308185285|ref|YP_003929418.1| transcription elongation factor NusA [Helicobacter pylori SJM180]
gi|308061205|gb|ADO03101.1| transcription elongation factor NusA [Helicobacter pylori SJM180]
Length = 395
Score = 189 bits (479), Expect = 1e-45, Method: Composition-based stats.
Identities = 100/381 (26%), Positives = 192/381 (50%), Gaps = 31/381 (8%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV
Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVEV 61
Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+E+ + + + ISL A++ DPS+ I +S L + A+ + + ++
Sbjct: 62 LEDNDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
+A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD
Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDNNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDS 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++
Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298
FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA +
Sbjct: 242 FSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301
Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
+++ + + +V + + S AIG+ G NV LAS LTG+ I
Sbjct: 302 KKIPIEELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361
Query: 340 DIITEEEDSINRQKDFNERTQ 360
+ T N + + + TQ
Sbjct: 362 EFETIPSVKENAENESEKETQ 382
>gi|193216986|ref|YP_002000228.1| transcription elongation factor NusA [Mycoplasma arthritidis
158L3-1]
gi|193002309|gb|ACF07524.1| transcription elongation factor NusA [Mycoplasma arthritidis
158L3-1]
Length = 524
Score = 189 bits (479), Expect = 1e-45, Method: Composition-based stats.
Identities = 108/462 (23%), Positives = 215/462 (46%), Gaps = 40/462 (8%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGD-ISLFRLL 66
E+ + + ++ K+++ + V+ + D+++K S Y +++ + E + I +
Sbjct: 14 EIFKAINDLSKLKNLNTNEVIELFKDAVKKVIMS-YDEDAELEFVFDEENNEFIVINHTK 72
Query: 67 EVVEEV---ENYTC-----QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118
VV++ E+ ++ L +A++ + G V+S+ + F + Q
Sbjct: 73 YVVQDPITAEDKDMLCRCIEVPLSIAKELKSTAKEGDVISETINFETFQKKDYIRILQSF 132
Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRE---N 175
Q +RE E+ + K+G+I+ V + +L + +R+ N
Sbjct: 133 NQSIRELEKKVIVGVYSLKIGQIVRAKVATPTTRGIFFELEDGTPAYMPSNANNRKLTAN 192
Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235
L+PGD + YI +V + QVL+S + + KL + EVPEI NG++ + ++R PG
Sbjct: 193 LQPGDSIDVYIDNVGDADKNVQVLVSTVESKLIDKLLYKEVPEIANGLIDIVKIARIPGE 252
Query: 236 RAKLAVFSSDS---SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALR 292
RAK+A+ +++ ++ VG+ +G GSR+ V+ +L+ E++D++ +S D TF+ NA+
Sbjct: 253 RAKIAISANEKTPIGVEVVGSVLGENGSRINNVIQQLKGERLDVIEYSADIKTFIKNAIS 312
Query: 293 PAIVTKVVLDEDVGRIE-----VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347
PA V +V +++ + V+VP + +LAIG+RGQNV LAS L +DI ++++
Sbjct: 313 PAKVIDIVENKEKWQANYPAYIVVVPNQHNTLAIGKRGQNVVLASDLVRAKLDIFSQDQA 372
Query: 348 SINRQKDFNERTQFFMQAINV-----------------DEIIAHLLVAEGFADVEEL--A 388
+ + + ++ D + F E A
Sbjct: 373 DLAKIEYDINNGNITQAELDELAQGKRLQSQFRRRTRQDTASRDTIDMADFEKEMEEIKA 432
Query: 389 CVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRE 430
+ E + F+++ + E A E + +L+K+I E
Sbjct: 433 RMTSYESFERQLFNQDVSNEDISLAFEKAQAELASLEKEIDE 474
>gi|308064276|gb|ADO06163.1| transcription elongation factor NusA [Helicobacter pylori Sat464]
Length = 395
Score = 189 bits (479), Expect = 1e-45, Method: Composition-based stats.
Identities = 100/381 (26%), Positives = 191/381 (50%), Gaps = 31/381 (8%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV
Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVEV 61
Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+E+ + + + ISL A++ DPS+ I +S L + A+ + + ++
Sbjct: 62 LEDNDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
+A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD
Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDNNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDS 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ R PG+RAK++
Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCVRIPGNRAKVSF 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298
FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA +
Sbjct: 242 FSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301
Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
+++ + + +V + + S AIG+ G NV LAS LTG+ I
Sbjct: 302 KKIPIGELNAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361
Query: 340 DIITEEEDSINRQKDFNERTQ 360
+ T N + + + TQ
Sbjct: 362 EFETIPSVKENAENESEKETQ 382
>gi|317010112|gb|ADU80692.1| transcription elongation factor NusA [Helicobacter pylori India7]
Length = 395
Score = 189 bits (479), Expect = 1e-45, Method: Composition-based stats.
Identities = 100/381 (26%), Positives = 192/381 (50%), Gaps = 31/381 (8%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV
Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVEV 61
Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+E+ + + + ISL A++ DPS+ I +S L + A+ + + ++
Sbjct: 62 LEDNDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
+A D + F+ ++ ++ G V V++ N +++ GV+ I E+ + GD
Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDHNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDS 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ R PG+RAK++
Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCVRIPGNRAKVSF 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298
FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA +
Sbjct: 242 FSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301
Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
+++ + + +V + + S AIG+ G NV LAS LTG+ I
Sbjct: 302 KKIPLEELNAEEKESVQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361
Query: 340 DIITEEEDSINRQKDFNERTQ 360
+ T N + + + TQ
Sbjct: 362 EFETIPSVKENAENESEKETQ 382
>gi|332674287|gb|AEE71104.1| transcription termination factor NusA [Helicobacter pylori 83]
Length = 395
Score = 189 bits (479), Expect = 1e-45, Method: Composition-based stats.
Identities = 100/381 (26%), Positives = 192/381 (50%), Gaps = 31/381 (8%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV
Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVI--EENKQLQLIQLVEV 61
Query: 69 VEEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+E+ + + + ISL A++ DPS+ I +S L + A+ + + ++
Sbjct: 62 LEDDDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
+A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD
Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDNNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDS 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++
Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298
FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA +
Sbjct: 242 FSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301
Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
+++ + + +V + + S AIG+ G NV LAS LTG+ I
Sbjct: 302 KKIPIEELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361
Query: 340 DIITEEEDSINRQKDFNERTQ 360
+ T N + + + TQ
Sbjct: 362 EFETIPSVKENAENESEKETQ 382
>gi|210135681|ref|YP_002302120.1| transcription elongation factor NusA [Helicobacter pylori P12]
gi|210133649|gb|ACJ08640.1| transcription termination factor A [Helicobacter pylori P12]
Length = 395
Score = 188 bits (478), Expect = 2e-45, Method: Composition-based stats.
Identities = 96/361 (26%), Positives = 184/361 (50%), Gaps = 31/361 (8%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV
Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVEV 61
Query: 69 VEEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+E+ + + + ISL A++ DPS+ I +S L + A+ + + ++
Sbjct: 62 LEDDDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
+A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD
Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDSNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDS 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++
Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298
FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ L PA +
Sbjct: 242 FSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLVLAPAKILSVEI 301
Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
V++ + + +V + + S AIG+ G NV LAS LTG+ I
Sbjct: 302 KKIPIEELSAEEKESIQERFVVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361
Query: 340 D 340
+
Sbjct: 362 E 362
>gi|297519524|ref|ZP_06937910.1| transcription elongation factor NusA [Escherichia coli OP50]
Length = 178
Score = 188 bits (478), Expect = 2e-45, Method: Composition-based stats.
Identities = 72/177 (40%), Positives = 113/177 (63%), Gaps = 1/177 (0%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
ER +F++ GEII+G VK+V N+ +DLGN+ + VI R++ + REN RPGDR
Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDR 178
>gi|317181199|dbj|BAJ58985.1| transcription elongation factor NusA [Helicobacter pylori F32]
Length = 395
Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats.
Identities = 100/381 (26%), Positives = 192/381 (50%), Gaps = 31/381 (8%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV
Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVI--EENKQLQLIQLVEV 61
Query: 69 VEEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+E+ + + + ISL A++ DPS+ I +S L + A+ + + ++
Sbjct: 62 LEDDDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
+A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD
Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDNNQNTFIEIEQQFQGVLSMRHRIKGESFKIGDS 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++
Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298
FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA +
Sbjct: 242 FSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301
Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
+++ + + +V + + S AIG+ G NV LAS LTG+ I
Sbjct: 302 KKIPIEELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361
Query: 340 DIITEEEDSINRQKDFNERTQ 360
+ T N + + + TQ
Sbjct: 362 EFETIPSVKENAENESEKETQ 382
>gi|269115299|ref|YP_003303062.1| transcription elongation protein NusA [Mycoplasma hominis]
gi|268322924|emb|CAX37659.1| Transcription elongation protein NusA [Mycoplasma hominis ATCC
23114]
Length = 546
Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats.
Identities = 113/509 (22%), Positives = 221/509 (43%), Gaps = 39/509 (7%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+ + ++ K ID+ V+ +++ K Y +D+ + E + ++ +
Sbjct: 24 EIYKQIYNLSQIKKIDQAEVVEAFKNTVTKLITETYDEEADLEFIFDQENDNFAIINHNK 83
Query: 68 VVEEVENYTC-----------QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116
VV V + +I L A+ DP+++IG +S + F +
Sbjct: 84 VV--VGDPITSEEKDRLTRCIEIPLSDAKKIDPNVEIGDSLSQEINFEYFSKKDYNKILA 141
Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRE-- 174
Q ++ ER ++ +VG + V G V ++L + +++
Sbjct: 142 NFSQDIKNLERKMTCEKYASEVGNSTKAKIVSVNKGKVNLELRDGTLAFMPSNFVNQRII 201
Query: 175 -NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDP 233
L PGD + I +V+ E Q+++S + + KLF +E+PEI G++ + ++R P
Sbjct: 202 SKLNPGDWIDVVIEEVKEENSNAQIIVSSVESRLLQKLFEIEIPEISQGLISIVNIARIP 261
Query: 234 GSRAKLAVFSSD---SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA 290
G RAK+++ S+ +++ +GA +G R+ + +L EKID+V++S D ++ NA
Sbjct: 262 GERAKVSIKKSNDAPETMEEIGAIMGRDSERISTISRKLNGEKIDVVLYSDDIKEYIKNA 321
Query: 291 LRPAIVTKVVLDEDVG---RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347
L PA V ++ VIVP Q +LAIG++GQNV LAS+L +DI+++E+
Sbjct: 322 LSPAKVIDLIEVPSKNSYPSFNVIVPTIQHTLAIGKKGQNVSLASELVKAKLDILSQEQA 381
Query: 348 SINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKI-------SEIASIEG 400
+ E + I + E L F + + +I+
Sbjct: 382 DERGIEYNFENGNITKEEIELLESGKKL--HHSFKHPKTIGNKNATNKFNTFENSFNIDE 439
Query: 401 FDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGI---- 456
FDE+ A E++ +A++ + + + + L + D + V EN +
Sbjct: 440 FDEDLA-EMRRKAQQNDNIFERQMFSNSLDEDLERTLSELND-DKENNVD--ENDLDPYS 495
Query: 457 KTMEDLAGCSVDDLLGWSENKGGNIEKFD 485
K+ ++L D+ + + ++ F
Sbjct: 496 KSFDELNEQKNDEEEDYEKITATKMKDFK 524
>gi|217034292|ref|ZP_03439709.1| hypothetical protein HP9810_885g23 [Helicobacter pylori 98-10]
gi|216943264|gb|EEC22729.1| hypothetical protein HP9810_885g23 [Helicobacter pylori 98-10]
Length = 395
Score = 188 bits (477), Expect = 3e-45, Method: Composition-based stats.
Identities = 99/381 (25%), Positives = 192/381 (50%), Gaps = 31/381 (8%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ + + +AYEK++ ++++ ++ + K A++ ++ V E + L +L+EV
Sbjct: 4 ISDLIECIAYEKNLPKEMISKMIQGCLLKMAQNELDPLARYLVI--EENKQLQLIQLVEV 61
Query: 69 VEEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+E+ + + + ISL A++ DPS+ I +S L + A+ + + ++
Sbjct: 62 LEDDDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNS-DGVIRRDETISRENLRPGDR 181
+A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD
Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDNHQNTFIEIEQQFQGVLSMRHRIKGESFKVGDS 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++
Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCTRIPGNRAKVSF 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298
FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA +
Sbjct: 242 FSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301
Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
+++ + + +V + + S AIG+ G NV LAS LTG+ I
Sbjct: 302 KKIPIEELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361
Query: 340 DIITEEEDSINRQKDFNERTQ 360
+ T N + + + TQ
Sbjct: 362 EFETIPSVKENAENESEKETQ 382
>gi|213022790|ref|ZP_03337237.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
Length = 177
Score = 187 bits (476), Expect = 3e-45, Method: Composition-based stats.
Identities = 91/172 (52%), Positives = 129/172 (75%)
Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234
RPGDR++ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPG
Sbjct: 5 TYRPGDRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPG 64
Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294
SRAK+AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA
Sbjct: 65 SRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPA 124
Query: 295 IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346
V +V+DED +++ V L+ AIGR GQNV LASQL+GW ++++T ++
Sbjct: 125 DVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVHLASQLSGWELNVMTVDD 176
>gi|317182719|dbj|BAJ60503.1| transcription elongation factor NusA [Helicobacter pylori F57]
Length = 395
Score = 187 bits (475), Expect = 4e-45, Method: Composition-based stats.
Identities = 98/381 (25%), Positives = 192/381 (50%), Gaps = 31/381 (8%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ + + +AYE+++ ++++ V+ + K ++ ++ V E + L +L+EV
Sbjct: 4 ISDLIECIAYERNLPKEMISKVIQGCLLKMVQNELDPLARYLVV--EENKQLQLIQLVEV 61
Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+E+ + + + ISL A++ DPS+ I +S L + + A+ + + ++
Sbjct: 62 LEDNDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLENMKQGAINRLFKDLQYQLE 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNS-DGVIRRDETISRENLRPGDR 181
+A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD
Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDNHQNTFIEIEQQFQGVLSMRHRIKGESFKVGDS 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++
Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298
FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA +
Sbjct: 242 FSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301
Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
+++ + + +V + + S AIG+ G NV LAS LTG+ I
Sbjct: 302 KKIPIEELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361
Query: 340 DIITEEEDSINRQKDFNERTQ 360
+ T N + + + TQ
Sbjct: 362 EFETIPSVKENAENESEKETQ 382
>gi|109946702|ref|YP_663930.1| transcription elongation factor NusA [Helicobacter acinonychis str.
Sheeba]
gi|109713923|emb|CAJ98931.1| N utilization substance protein A [Helicobacter acinonychis str.
Sheeba]
Length = 395
Score = 186 bits (472), Expect = 9e-45, Method: Composition-based stats.
Identities = 96/361 (26%), Positives = 184/361 (50%), Gaps = 31/361 (8%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV
Sbjct: 4 ISDLIECIAYEKNLPKEMISKVVQGCLLKMAQNELDPLARYLVI--EENKQLQLIQLVEV 61
Query: 69 VEEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123
+E+ + + + ISL A++ DPS+ I +S L + A+ + + ++
Sbjct: 62 LEDDDEGLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121
Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNS-DGVIRRDETISRENLRPGDR 181
+A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD
Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDNNQNTFIEIEQQFQGVLSMRHRIKGESFKIGDS 181
Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241
+K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ R PG+RAK++
Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCVRIPGNRAKVSF 241
Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298
FS++S IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA +
Sbjct: 242 FSNNSRIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301
Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
+++ + + +V + + S AIG+ G NV LAS LT + I
Sbjct: 302 KKIPIEELSAQEKELIQERFIVNNHLQKAKVRLLDTEKSKAIGKGGVNVCLASMLTSYHI 361
Query: 340 D 340
+
Sbjct: 362 E 362
>gi|47458985|ref|YP_015847.1| transcription elongation factor NusA [Mycoplasma mobile 163K]
gi|47458313|gb|AAT27636.1| N-utilization substance protein a [Mycoplasma mobile 163K]
Length = 514
Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats.
Identities = 91/350 (26%), Positives = 173/350 (49%), Gaps = 20/350 (5%)
Query: 21 SIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINP-ETGD--ISLFRLLEVVEEVENYTC 77
+ + V+ + ++I + + + + + I ETG+ I L+ L ++V + +
Sbjct: 26 DLSQKEVMDTLLNAITLIFNNDFDPNAKLDLVIEKSETGESKIKLYILNKLVTDYDVEEE 85
Query: 78 Q----ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133
+ ++++ A+ +PS+++ D +P F + V Q ++E ++ +
Sbjct: 86 EKYYSMNVENAKKINPSLEVNMTFKDEIPFESFSPSIFKKIYNVFTQSMKEFSKEYLISK 145
Query: 134 FKDKVGEIIS----GTVKRVEYGNVIVDL----GNSDGVIRRDETISRENLRPGDRVKSY 185
+ + G+II G V + L G+ + + + GD V+ Y
Sbjct: 146 YGNLKGQIIRMKIEGINITNNRRMVSLKLENENGSIEAFMPDKLQNPNIEMVIGDYVEVY 205
Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245
+ DV+ + RG +V++S T + + KL +E+PEI +G + + A+ R PG R+K+AV +
Sbjct: 206 VEDVKPDSRGLRVIVSNTSNEILKKLLELEIPEIASGNIVINAIKRIPGIRSKIAVSKTS 265
Query: 246 ---SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV--TKVV 300
IDP+GA VG +GSR+ + L EKID++++ + F+IN++ PA V +
Sbjct: 266 FAPDGIDPMGAIVGQKGSRINKISDRLGGEKIDVILFDTNLEKFIINSISPASVAHISKI 325
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350
DE V+VP + AIG+ GQNV+LA+ LT +DI++ +
Sbjct: 326 NDEANNHFLVVVPDLDNTKAIGKAGQNVKLAAGLTETRLDILSVTQAKEK 375
>gi|218459797|ref|ZP_03499888.1| transcription elongation factor NusA [Rhizobium etli Kim 5]
Length = 262
Score = 182 bits (461), Expect = 2e-43, Method: Composition-based stats.
Identities = 111/218 (50%), Positives = 151/218 (69%), Gaps = 1/218 (0%)
Query: 304 DVGRIEVIVPKEQLSLAIG-RRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362
D RIEV V + + QNVRLASQLTGW IDI+TE E+S RQK+FNERT F
Sbjct: 33 DARRIEVFVSRTRQRRLRSVAAAQNVRLASQLTGWDIDIMTEAEESERRQKEFNERTNLF 92
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
M +++VDE++ +L +EGFA VEELA V + EI+SI+GFDE+TA EIQ RARE+LE ++
Sbjct: 93 MDSLDVDEMVGQVLASEGFAAVEELAYVDLDEISSIDGFDEDTAQEIQTRAREFLERLEA 152
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482
+ +K + LGV +EL I G+ +++ VALGE+GIK++ED AGC+ DDL+GW+E K G +
Sbjct: 153 EMDEKRKALGVQDELREIDGMTAQMMVALGEDGIKSIEDFAGCAADDLVGWTERKNGETK 212
Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADE 520
KF+G S + + E MI+ AR GWI +E +A
Sbjct: 213 KFEGLFSKFDVSRVEAEQMIVQARLAAGWITEEDLAKG 250
>gi|325973212|ref|YP_004250276.1| transcription termination factor NusA [Mycoplasma suis str.
Illinois]
gi|325989656|ref|YP_004249355.1| antitermination factor NusA [Mycoplasma suis KI3806]
gi|323574741|emb|CBZ40397.1| antitermination factor NusA [Mycoplasma suis]
gi|323651814|gb|ADX97896.1| transcription termination factor NusA [Mycoplasma suis str.
Illinois]
Length = 421
Score = 179 bits (455), Expect = 7e-43, Method: Composition-based stats.
Identities = 98/387 (25%), Positives = 183/387 (47%), Gaps = 32/387 (8%)
Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64
N + L+ ++ E S+++ + + +S + Y + S +++EI+ E I L++
Sbjct: 4 NHKQFLEAITKISKEYSLEKSTISDFLKESFKYVFEREY-SDSLVKLEIDLENCKIELWK 62
Query: 65 LLEVVEEV-------ENYTCQISLKVA-RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116
L+VV E E+ C I + + + +G S+P+ D V++
Sbjct: 63 ELKVVTEEYFYGEGMEDSECLIPVSKLPQRYQKKLKVGQYYSEPVNLEDLSTKIVKNILF 122
Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKR------VEYGNVIVDL-------GNSDG 163
+ E + + ++ + GE+ G V++ +IV L + G
Sbjct: 123 HFQKLTLETVNQKIHEKWISRKGEVFEGMVEKIFETKEKLPKEIIVSLIDPENEAHTTKG 182
Query: 164 VIRRDETIS---------RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHM 214
++ R + I ENL PG I +V G ++LSRT P + L
Sbjct: 183 IVYRSDLIQALSNDGYRLYENLVPGKIYNFEIKEVLENSAGCPIILSRTSPAIVKYLMKK 242
Query: 215 EVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKI 274
+ E+++G+V + A++R G R+K+ V + +++IDPVG C+G +G+R++ + ++L +E+I
Sbjct: 243 HISEVHDGLVTINAIARISGMRSKVLVSTKNNNIDPVGCCIGPKGNRLKVISSQLLNERI 302
Query: 275 DIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQ 333
D+++W+ D +INA + + +E+ I +I + L LAIG+RG NV+L S
Sbjct: 303 DVILWNSDPIKNIINAFSGTRILGYKISEEEENSITLITTIDNLLLAIGKRGTNVKLVSL 362
Query: 334 LTGWTIDIITEEEDSINRQKDFNERTQ 360
LTGW I + T +E R
Sbjct: 363 LTGWKIFLKTIQEAKAERINYLPIDKD 389
>gi|144575229|gb|AAZ44092.2| N-utilization substance protein A [Mycoplasma synoviae 53]
Length = 560
Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats.
Identities = 94/436 (21%), Positives = 187/436 (42%), Gaps = 26/436 (5%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF-RLLEV 68
+ ++ + K I D +++ + I +++ ++ E +I L + EV
Sbjct: 20 FLLLNSFSKNKEISNDEFIAMSQEVINHIINRKLDPEAEVVFSVDNEKEEILLLNKNTEV 79
Query: 69 VEEVE----NYTCQIS---LKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
VE+ E + IS L A++ + + +G ++S P+ F + + + +
Sbjct: 80 VEDSEAAMYDELLGISYIGLSKAKEVNKNAKVGDLISYPIEFNSFDQKNLVAMRNGFSAA 139
Query: 122 VREAERDRQYLEFKDKVG-EIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPG 179
+ E ++R + ++ +G +++ + E G + L + + ++ I L PG
Sbjct: 140 IAEKAKNRLFAKYHPLIGSKLMVQIASKHENGGFFLKLEDGTSAYLPKNSIIKSVELNPG 199
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
+ ++ V + +G + ++ T P+ + + E+PEI NG + ++ + R PG R+K+
Sbjct: 200 QKFDVFLNSVNIDAKGLYLEVTMTSPEQVRDVLFREIPEIANGDLIIRNIQRIPGERSKV 259
Query: 240 AV-----FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294
V S + D +GA G + R+ V L +EKID++ ++ + F+ NA+ P
Sbjct: 260 VVSLNPEKQSAHTHDLLGAMFGNKAQRINDVSKSLNNEKIDVIRFAENPKDFIRNAMSPC 319
Query: 295 IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354
V V + + VIV E +SLAIG G NV LAS++T ID+++ E+ +
Sbjct: 320 PV--VDVVKSKKGFYVIVRPEDVSLAIGSNGVNVSLASKVTNNKIDVLSTEQAFQEKIYF 377
Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414
+ ++ E + + IE F ++ A I
Sbjct: 378 QDNYVPVHYTPRERNKNNFKKQARERASFGFDF---------GIEEFSKDVANFISKVEL 428
Query: 415 EYLEGIDITLQKKIRE 430
E L D + K E
Sbjct: 429 EDLLKEDKAQETKQTE 444
>gi|71894695|ref|YP_278803.1| transcription elongation factor NusA [Mycoplasma synoviae 53]
Length = 561
Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats.
Identities = 94/436 (21%), Positives = 187/436 (42%), Gaps = 26/436 (5%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF-RLLEV 68
+ ++ + K I D +++ + I +++ ++ E +I L + EV
Sbjct: 21 FLLLNSFSKNKEISNDEFIAMSQEVINHIINRKLDPEAEVVFSVDNEKEEILLLNKNTEV 80
Query: 69 VEEVE----NYTCQIS---LKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
VE+ E + IS L A++ + + +G ++S P+ F + + + +
Sbjct: 81 VEDSEAAMYDELLGISYIGLSKAKEVNKNAKVGDLISYPIEFNSFDQKNLVAMRNGFSAA 140
Query: 122 VREAERDRQYLEFKDKVG-EIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPG 179
+ E ++R + ++ +G +++ + E G + L + + ++ I L PG
Sbjct: 141 IAEKAKNRLFAKYHPLIGSKLMVQIASKHENGGFFLKLEDGTSAYLPKNSIIKSVELNPG 200
Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239
+ ++ V + +G + ++ T P+ + + E+PEI NG + ++ + R PG R+K+
Sbjct: 201 QKFDVFLNSVNIDAKGLYLEVTMTSPEQVRDVLFREIPEIANGDLIIRNIQRIPGERSKV 260
Query: 240 AV-----FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294
V S + D +GA G + R+ V L +EKID++ ++ + F+ NA+ P
Sbjct: 261 VVSLNPEKQSAHTHDLLGAMFGNKAQRINDVSKSLNNEKIDVIRFAENPKDFIRNAMSPC 320
Query: 295 IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354
V V + + VIV E +SLAIG G NV LAS++T ID+++ E+ +
Sbjct: 321 PV--VDVVKSKKGFYVIVRPEDVSLAIGSNGVNVSLASKVTNNKIDVLSTEQAFQEKIYF 378
Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414
+ ++ E + + IE F ++ A I
Sbjct: 379 QDNYVPVHYTPRERNKNNFKKQARERASFGFDF---------GIEEFSKDVANFISKVEL 429
Query: 415 EYLEGIDITLQKKIRE 430
E L D + K E
Sbjct: 430 EDLLKEDKAQETKQTE 445
>gi|255030994|ref|ZP_05302945.1| transcription elongation factor NusA [Listeria monocytogenes LO28]
Length = 179
Score = 177 bits (448), Expect = 5e-42, Method: Composition-based stats.
Identities = 62/179 (34%), Positives = 104/179 (58%)
Query: 32 ADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSI 91
++ A + + ++RV++N E G I + E VE+V + +IS++ A +P
Sbjct: 1 EAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKEAVEQVFDSRLEISMEEAHKLNPVY 60
Query: 92 DIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEY 151
G VV + P DFGR+A Q+AKQV+ Q+VREAER Y EF D+ +I++G V+R +
Sbjct: 61 QPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAERGIIYDEFIDREDDIMTGIVERQDS 120
Query: 152 GNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVK 210
+ V+LG + ++ ++E + E DR+K Y+ V + +GPQ+ +SRTHP + +
Sbjct: 121 RFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLTKVEKTTKGPQIFVSRTHPGLLKR 179
>gi|219558857|ref|ZP_03537933.1| transcription elongation factor NusA [Mycobacterium tuberculosis
T17]
Length = 194
Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats.
Identities = 83/173 (47%), Positives = 115/173 (66%), Gaps = 1/173 (0%)
Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRD 232
E+ G+R++ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+
Sbjct: 1 GESYEHGNRLRCYVVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVARE 60
Query: 233 PGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALR 292
G R+K+AV S+ + ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL
Sbjct: 61 AGHRSKIAVRSNVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDPARFVANALS 120
Query: 293 PAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344
PA V V +D+ V+VP QLSLAIG+ GQN RLA++LTGW IDI +
Sbjct: 121 PAKVVSVSVIDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 173
>gi|294155314|ref|YP_003559698.1| transcription termination factor NusA [Mycoplasma crocodyli MP145]
gi|291600250|gb|ADE19746.1| transcription termination factor NusA [Mycoplasma crocodyli MP145]
Length = 566
Score = 173 bits (438), Expect = 8e-41, Method: Composition-based stats.
Identities = 101/459 (22%), Positives = 184/459 (40%), Gaps = 37/459 (8%)
Query: 5 NRLELLQIADAVAYE--KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62
N L QIAD +A E K+I+RD+ + + + ++ IN
Sbjct: 30 NNLSTQQIADIIADETTKAINRDIDPEAIINFVV-------DEEREVVSIINTNA----- 77
Query: 63 FRLLEVVEEVENYTCQ--------ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSA 114
VVE+ + + + A+ S++I + + F +
Sbjct: 78 ----TVVEDEFEFNGDQDVQKISFVPISKAKKVKKSVEIDDAIDWEIDFEIFNEKTKTAI 133
Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG---NSDGVIRRDETI 171
K IQ+++ E+ Y ++ +GE + + +LG +
Sbjct: 134 KNGFIQQLKANEKAAIYNKYSKLIGEKLKAKILSKNKDGSY-NLGLEDGVTAFLPYANIN 192
Query: 172 SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSR 231
+ NL PG + Y+ +V E + QV +S PQ + L + EVPEI G++ V ++ R
Sbjct: 193 QKLNLNPGLFIDVYVDNVSEENKLSQVQVSTDSPQAIYDLLNKEVPEIAQGLIDVVSIQR 252
Query: 232 DPGSRAKLAVFSSDS--SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN 289
PG R+K+AV S+ S+DP+ + +G GSR+ + L EK+D++++S FV N
Sbjct: 253 VPGMRSKIAVKKSNPADSLDPISSIIGYNGSRINEISNALGGEKVDVILYSDVKEEFVKN 312
Query: 290 ALRPAIVTKVVLDE--DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE- 346
AL PA + VV + D ++ + +A+GR NV LA +LTG I+++ E
Sbjct: 313 ALLPAKIIDVVKNNGADNYYFAIVASDSDMYVAMGRGVVNVNLAKKLTGTRIELLKVSEA 372
Query: 347 DSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVE-ELACVKISEIASIEGFDE-E 404
+ + + + + V+ F ++ ++ + IE E
Sbjct: 373 IAKGIEFKKQQSFEKPLIGKFVNRSPKKSKSTNYFDGIDIDINDFANDVNSFIETQKTIE 432
Query: 405 TAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGI 443
I A++ +K + E +
Sbjct: 433 ETKAIVKEAKKAAVKQQKEKNEKAKSENPRNEQTDFDSM 471
>gi|293363915|ref|ZP_06610651.1| putative transcription termination factor NusA [Mycoplasma
alligatoris A21JP2]
gi|292552405|gb|EFF41179.1| putative transcription termination factor NusA [Mycoplasma
alligatoris A21JP2]
Length = 564
Score = 170 bits (432), Expect = 4e-40, Method: Composition-based stats.
Identities = 88/465 (18%), Positives = 183/465 (39%), Gaps = 41/465 (8%)
Query: 4 ANRLELLQIADAVAYE--KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61
N L Q+AD +A E K+I+RD+ + I ++ + +
Sbjct: 28 KNNLTAQQVADMIADETTKAINRDIDPEAI-----------------ITFTVDESSESVF 70
Query: 62 LFR-LLEVVEEVENYTCQ--------ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQ 112
+ VVE+ ++ + + A+ + + + ++ +
Sbjct: 71 IKNTNAVVVEDDFEFSGETDVQHISFVPYSKAKKVNKEVHVDDIIEWEIDFEIVTEKCKT 130
Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI--VDLGNSDGVIRRDET 170
+ + IQ+++ E+ + ++ +G I + +
Sbjct: 131 AIRNGFIQQLKANEKAEIFKKYHQLIGTKIKAKILSRNKDGSYNLAFEDGVTAFLPFSNI 190
Query: 171 ISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVS 230
+R L+ G + YI V E + QV +S PQ + L EVPEI G+V++ +
Sbjct: 191 NTRIELKHGVLIDVYIETVSEENKLSQVQVSTDSPQMVYDLLKNEVPEIAQGLVEIMNIQ 250
Query: 231 RDPGSRAKLAVF--SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVI 288
R PG R+K+AV S +S +DP+ + +G+ GSR+ + +L EKID++++S + ++
Sbjct: 251 RAPGIRSKIAVRKTSVESEVDPISSVIGVNGSRINEISRKLGGEKIDVILYSEEITEYIK 310
Query: 289 NALRPAIVTKVVLDE--DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT--E 344
NAL PA + VV ++ D ++ + + +A+G+ NV LA +++G I++I E
Sbjct: 311 NALSPARIVDVVKNKAMDNYYYAIVNSETDMYVAMGKGVVNVNLAKKISGCRIELIKAAE 370
Query: 345 EEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404
+ + + NV + + F ++ +++ +E
Sbjct: 371 AVEKGLEFNKAKFYDKPLIGRGNVKTFVKKSRPSNYFDGIDINLSDFAKDVSMFMETQKE 430
Query: 405 T--AVEIQGRAREYLEGIDITLQKK---IRELGVSEELCSIPGID 444
E A + I +K + + + +
Sbjct: 431 INEVKESIKEANKLAAKQAIRNKKSSTVVEQKSPDFDSMFDEEMS 475
>gi|321310946|ref|YP_004193275.1| transcription termination factor N-utilization substance protein A
[Mycoplasma haemofelis str. Langford 1]
gi|319802790|emb|CBY93436.1| transcription termination factor N-utilization substance protein A
[Mycoplasma haemofelis str. Langford 1]
Length = 432
Score = 169 bits (429), Expect = 9e-40, Method: Composition-based stats.
Identities = 96/402 (23%), Positives = 172/402 (42%), Gaps = 38/402 (9%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
LL + AV + + + V ++ D+ + Y + I V+++ + I ++R L V
Sbjct: 11 LLSLVSAVGEKYDLSPETVARLLEDTFRSVFLKEY-PDNIIDVDVDLKKAKIEIWRHLRV 69
Query: 69 VEEV-------ENYTCQI------SLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAK 115
V + E+ I SL S +G V + F +
Sbjct: 70 VTDDYYNGEGNEDDETLIPVSKLASLPNTSKNPSSPKVGDTVFQEVDIESFDDKIANNI- 128
Query: 116 QVIIQKVREAERDR-QYLEFKDKVGEIISGTVKRVEYGN-------VIVDLGN-----SD 162
Q +K+ E+E R ++ G+++ G ++ + +IV L +
Sbjct: 129 QFYFKKLTESEVSRSICQKWTPFHGKVVEGVIEEIIENRDDRTIKKIIVSLEAPDKTIAK 188
Query: 163 GVIRRDETI---------SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFH 213
GVI R + + ENL G+ Y+ ++ + LSRT + +
Sbjct: 189 GVIFRSDLVWIDGPNGTRIYENLVLGNTYLFYVKEISEVNVHLPIFLSRTDSEITKHVMA 248
Query: 214 MEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEK 273
+ EI G V++KA++R G ++K+ V S+D +ID VG C+G +G R++ + EL +EK
Sbjct: 249 KHISEISEGKVEIKAIARIAGFKSKVLVHSNDPNIDAVGCCIGPKGERLKVISRELLNEK 308
Query: 274 IDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQ 333
ID+++W+ D VIN+ + L ED I ++ + L IG+RG N +L
Sbjct: 309 IDVILWNEDPVQNVINSFVTGKILGYRL-EDENEITLVATLDNLLSCIGKRGSNTKLVYM 367
Query: 334 LTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHL 375
LTGW I++ T +E F + + + I +
Sbjct: 368 LTGWKINLKTIQEAKDEGIDYVAIDDDKFTNSNKISDRIFKM 409
>gi|213022854|ref|ZP_03337301.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
Length = 165
Score = 169 bits (428), Expect = 1e-39, Method: Composition-based stats.
Identities = 58/153 (37%), Positives = 96/153 (62%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL 158
ER +F+D+ GEI++G VK+V N+ +++
Sbjct: 122 ERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEI 154
>gi|297250843|ref|ZP_06865170.2| transcription termination/antitermination protein NusA [Neisseria
polysaccharea ATCC 43768]
gi|296837867|gb|EFH21805.1| transcription termination/antitermination protein NusA [Neisseria
polysaccharea ATCC 43768]
Length = 208
Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats.
Identities = 86/228 (37%), Positives = 139/228 (60%), Gaps = 21/228 (9%)
Query: 289 NALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
+AL PA V+++V+DED ++VIV ++QL+LAIGR GQNVRLAS+LTGW ++I+T E
Sbjct: 2 SALSPAEVSRIVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASELTGWQLNIMTSAEAD 61
Query: 349 INRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408
+ + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE
Sbjct: 62 ERNAAEDAAIRRLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDM 121
Query: 409 IQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVD 468
++ RAR+ + + I ++K+ E VS+++ ++ G+D+ + +L E GI T +DLA +VD
Sbjct: 122 LRNRARDAILTMAIAAEEKLGE--VSDDMRNLEGVDADMLRSLAEAGITTRDDLAELAVD 179
Query: 469 DLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516
+L+ + G ++ +++I+ AR W ++K
Sbjct: 180 ELIEIT-----------------GVNEETAKAVILTAREH--WFTEDK 208
>gi|213421302|ref|ZP_03354368.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
Length = 150
Score = 163 bits (412), Expect = 8e-38, Method: Composition-based stats.
Identities = 58/149 (38%), Positives = 93/149 (62%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
+VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNV 154
ER +F+D+ GEI++G VK+V N+
Sbjct: 122 ERAMVVDQFRDQEGEIVTGVVKKVNRDNI 150
>gi|330723850|gb|AEC46220.1| transcription elongation factor NusA [Mycoplasma hyorhinis MCLD]
Length = 538
Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats.
Identities = 102/476 (21%), Positives = 188/476 (39%), Gaps = 51/476 (10%)
Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGD--ISL 62
N E+LQ ++ + ID + + ++ DSI + S + ++I + I+ + I +
Sbjct: 18 NFQEILQ---DISEFRKIDLNNIKDILQDSISRQIVSKLDSEAEIELVIDEQNPQEFIVI 74
Query: 63 FRLLEVVEEVE-------------------------NYTCQISLKVARDRDPSIDIGGVV 97
+ VV + E I L A++ +P+ +
Sbjct: 75 NKNGTVVTDQEFSDMLTVAPEFTHTDMSDKQTSFQSEKITFIPLSTAKEINPNAKVDDTF 134
Query: 98 SDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVD 157
P+ +F + Q QK+ E R Y ++ II T+ +
Sbjct: 135 DIPIDISEFDKHIFVPIIQTFKQKIHEFTRKLIYQKYFPLKNSIIKATLIKKSQNGFNYL 194
Query: 158 LGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVP 217
L IS N+ + +I DV Q+ Q++LS + + E+P
Sbjct: 195 LEGEIPAYMPKPNISNFNIALNTEEEVFIEDVLDNQKDSQIILSSKEGMILKEKLKREIP 254
Query: 218 EIYNGIVQVKAVSRDPGSRAKLAVFS-----SDSSIDPVGACVGMRGSRVQAVVTELRDE 272
E+ GI+++ V+R+ G R+K++V + +D VG+ +G GSR+ + E+ E
Sbjct: 255 EVEAGILEIVNVAREAGLRSKVSVKKVHEDENSQGVDEVGSLIGKNGSRIATINKEILGE 314
Query: 273 KIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG--RIEVIVPKEQLSLAIGRRGQNVRL 330
KIDIV + P+ ++INAL PA V + + + V+VP + AIG+ NVRL
Sbjct: 315 KIDIVRYDPNITKYIINALSPARVVYIEEVKKSKGQKFLVVVPTSHQAKAIGKNAINVRL 374
Query: 331 ASQLTGWTIDIITEEED------------SINRQKDFNERTQFFMQAINVDEIIAHLLVA 378
A++LT IDI + ++ ++ Q + + + E H
Sbjct: 375 ANELTRTKIDIKSYKDYISEGKTITHWNANVENQHELEQIEKASSVPHKTTEHKNHRYTR 434
Query: 379 EGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVS 434
+ F++ +A + IE E + E++E I ++
Sbjct: 435 KSFSNTNIMAEFEKDIEKYIEDLQNERL--LYEDEEEFVENISTKETALEKQAKPE 488
>gi|304373277|ref|YP_003856486.1| Transcription termination-antitermination factor nusA [Mycoplasma
hyorhinis HUB-1]
gi|304309468|gb|ADM21948.1| Transcription termination-antitermination factor nusA [Mycoplasma
hyorhinis HUB-1]
Length = 557
Score = 161 bits (407), Expect = 3e-37, Method: Composition-based stats.
Identities = 96/446 (21%), Positives = 179/446 (40%), Gaps = 41/446 (9%)
Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGD--ISL 62
N E+LQ ++ + ID + + ++ DSI + S + ++I + I+ + I +
Sbjct: 18 NFQEILQ---DISEFRKIDLNNIKDILQDSISRQIVSKLDSEAEIELVIDEQNPQEFIVI 74
Query: 63 FRLLEVVEEVE-------------------------NYTCQISLKVARDRDPSIDIGGVV 97
+ VV + E I L A++ +P+ +
Sbjct: 75 NKNGTVVTDQEFSDMLTVAPEFTHTDMSDKQTSFQSEKITFIPLSTAKEINPNAKVDDTF 134
Query: 98 SDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVD 157
P+ +F + Q QK+ E R Y ++ II T+ +
Sbjct: 135 DIPIDISEFDKHIFVPIIQTFKQKIHEFTRKLIYQKYFPLKNSIIKATLIKKSQNGFNYL 194
Query: 158 LGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVP 217
L IS N+ + + +I DV Q+ Q++LS + + E+P
Sbjct: 195 LEGEIPAYMPKPNISNFNIALNTKEEVFIEDVLDNQKDSQIILSSKEGMILKEKLKREIP 254
Query: 218 EIYNGIVQVKAVSRDPGSRAKLAVFS-----SDSSIDPVGACVGMRGSRVQAVVTELRDE 272
E+ GI+++ V+R+ G R+K++V + +D VG+ +G GSR+ + E+ E
Sbjct: 255 EVEAGILEIVNVAREAGLRSKVSVKKVHEDENSQGVDEVGSLIGKNGSRIATINKEILGE 314
Query: 273 KIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG--RIEVIVPKEQLSLAIGRRGQNVRL 330
KIDIV + P+ ++INAL PA V + + + V+VP + AIG+ NVRL
Sbjct: 315 KIDIVRYDPNITKYIINALSPARVVYIEEVKKSKGQKFLVVVPTSHQAKAIGKNAINVRL 374
Query: 331 ASQLTGWTIDI--ITEEEDSINRQKDFNERTQFFMQAINVDEIIAH--LLVAEGFADVEE 386
A++LT IDI + +N + + +++ +
Sbjct: 375 ANELTRTKIDIKSYKDYISEGKTITHWNANVENQHELEQIEKASSVPYKTTEHKNHRYTR 434
Query: 387 LACVKISEIASIEGFDEETAVEIQGR 412
+ + +A E E+ ++Q
Sbjct: 435 KSFSNTNIMAEFEKDIEKYIEDLQNE 460
>gi|319776808|ref|YP_004136459.1| n-utilization substance protein a [Mycoplasma fermentans M64]
gi|318037883|gb|ADV34082.1| N-utilization substance protein A [Mycoplasma fermentans M64]
Length = 538
Score = 159 bits (401), Expect = 2e-36, Method: Composition-based stats.
Identities = 95/461 (20%), Positives = 188/461 (40%), Gaps = 40/461 (8%)
Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71
+ EK + + V+ + ++ + + ++I E++ E ++ +F V +
Sbjct: 23 LIGYFEKEK-LPIEEVIKIFSEETTRIINKILDPNAEIVFELDKEKQEVHIFNNKTCVTK 81
Query: 72 VE----NYTCQISL---KVARDRDPSIDIGGVVSDPLPPMDFGR-------VAVQSAKQV 117
E + QIS K A+ R P + + + + +++
Sbjct: 82 DEELLLDLENQISFVGYKEAKVRMPKVKEDDEIKWEIDLGVLDKSKNPEAKKSLKIINSS 141
Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG---NVIVDLGNSDGVIRRDETISRE 174
I Q ++ ++ + ++ K+G+ + + NV + N + + ++
Sbjct: 142 IAQAIKTLQKKMVFEQYSSKIGQTVKVVLNSKNSNGSWNVQIVNSNVNAYLPAGLISTKR 201
Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234
PG I V E + Q+ +S P+ + + +PEI G+++V V R PG
Sbjct: 202 KANPGQYFDVVIEKVSEETKLSQIEVSLDSPKIVWNILQNNIPEIAEGLIEVVDVVRQPG 261
Query: 235 SRAKLAVF---SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINAL 291
R K+AV ++ ID G+ +G GSR+ + +L EKID++++ D +V N++
Sbjct: 262 ERVKVAVKLAEGANPDIDVRGSIIGENGSRIDLLSQKLDGEKIDVILYDEDIKKYVANSI 321
Query: 292 RPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350
P V+L DE + VIV E L+ AIG+RG N LAS LT +DII+ +
Sbjct: 322 SPIPAVDVILKDERENKYLVIVVPEHLTPAIGKRGVNAYLASSLTKVKLDIISITDAKAQ 381
Query: 351 ----------------RQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISE 394
+++ R Q ++ A+ + A+ F ++ +
Sbjct: 382 GIIFDETLVPTISATIKKEGPKIRYQKSNNNRRFNKKPANNIFAQSFDSIDVSNF--DQD 439
Query: 395 IASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSE 435
IA+ E +++ +Q + E + + E V
Sbjct: 440 IAAFELHEQDRLDSLQEDDSNFEELVKKIESEYAVENEVEN 480
>gi|240047659|ref|YP_002961047.1| transcription elongation factor NusA [Mycoplasma conjunctivae
HRC/581]
gi|239985231|emb|CAT05244.1| N-utilization substance protein A [Mycoplasma conjunctivae]
Length = 623
Score = 158 bits (400), Expect = 2e-36, Method: Composition-based stats.
Identities = 82/351 (23%), Positives = 156/351 (44%), Gaps = 24/351 (6%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL-E 67
+L+ +A + D+VL + SI+K +++ +E + + ++ + E
Sbjct: 20 ILESLKEIAQQNQTTIDIVLETFSKSIEKVINKKIDPEAELELETDFDKFIFKVYNINGE 79
Query: 68 VVEE-----------VENYTCQISLKVARDRD----PSIDIGGVVSDPLPPMDFGRVAVQ 112
+VE+ E IS+ A + + +G V + F + Q
Sbjct: 80 IVEDTYFDNLDDLAKHEASFSFISISDAIAKKIAKPEDLQVGNRVKIEIDITTFDKSIFQ 139
Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETI 171
SA Q Q E R R Y ++ +I + + I +L +
Sbjct: 140 SAIQNFKQTNSEINRQRIYDKYLPLKNTVILAKITNKIHSGYIFELVEDKVAAFMPSHYS 199
Query: 172 SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSR 231
+ L+ GD ++ I DV + + Q+++S Q + +PE+ +++ +++R
Sbjct: 200 IGQKLKVGDILEVVIEDVNKSSKQSQIIVSSKSIQLVKNKIINAIPELQTNNLEIVSIAR 259
Query: 232 DPGSRAKLAVFSSD-SSIDPV---GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFV 287
PG + K+AV ++ D + GA +G +G R++++ +L E+I+IV + + TFV
Sbjct: 260 IPGEKCKVAVKKTNLPGSDHISELGAIIGEKGVRIESISQDLDGEQIEIVKYDENILTFV 319
Query: 288 INALRPAIVTK---VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLT 335
NA+ PA V ++ V+VP Q +LAIG++G NV+LA+ LT
Sbjct: 320 ANAIAPARVVCVKEFKINNKNKHYTVVVPDFQHTLAIGKKGSNVQLATDLT 370
>gi|308189651|ref|YP_003922582.1| N utilization substance protein A [Mycoplasma fermentans JER]
gi|307624393|gb|ADN68698.1| N utilization substance protein A [Mycoplasma fermentans JER]
Length = 538
Score = 156 bits (395), Expect = 8e-36, Method: Composition-based stats.
Identities = 94/461 (20%), Positives = 187/461 (40%), Gaps = 40/461 (8%)
Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71
+ EK + + V+ + ++ + + ++I E++ E ++ +F V +
Sbjct: 23 LIGYFEKEK-LPIEEVIKIFSEETTRIINKILDPNAEIVFELDKEKQEVHIFNNKTCVTK 81
Query: 72 VE----NYTCQISL---KVARDRDPSIDIGGVVSDPLPPMDFGR-------VAVQSAKQV 117
E + QIS K A+ R + + + + +++
Sbjct: 82 DEELLLDLENQISFVGYKEAKVRMSKVKEDDEIKWEIDLGVLDKSKNPEAKKSLKIINSS 141
Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG---NVIVDLGNSDGVIRRDETISRE 174
I Q ++ ++ + ++ K+G+ + + NV + N + + ++
Sbjct: 142 IAQAIKTLQKKMVFEQYSSKIGQTVKVVLNSKNSNGSWNVQIVNSNVNAYLPAGLISTKR 201
Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234
PG I V E + Q+ +S P+ + + +PEI G+++V V R PG
Sbjct: 202 KANPGQYFDVVIEKVSEETKLSQIEVSLDSPKIVWNILQNNIPEIAEGLIEVVDVVRQPG 261
Query: 235 SRAKLAVF---SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINAL 291
R K+AV ++ ID G+ +G GSR+ + +L EKID++++ D +V N++
Sbjct: 262 ERVKVAVKLAEGANPDIDVRGSIIGENGSRIDLLSQKLDGEKIDVILYDEDIKKYVANSI 321
Query: 292 RPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350
P V+L DE + VIV E L+ AIG+RG N LAS LT +DII+ +
Sbjct: 322 SPIPAVDVILKDERENKYLVIVVPEHLTPAIGKRGVNAYLASSLTKVKLDIISITDAKAQ 381
Query: 351 ----------------RQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISE 394
+++ R Q ++ A+ + A+ F ++ +
Sbjct: 382 GIIFDETLVPTISATIKKEGPKIRYQKSNNNRRFNKKPANNIFAQSFDSIDVSNF--DQD 439
Query: 395 IASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSE 435
IA+ E +++ +Q + E + + E V
Sbjct: 440 IAAFELHEQDRLDSLQEDDSNFEELVKKIESEYAVENEVEN 480
>gi|238809615|dbj|BAH69405.1| hypothetical protein [Mycoplasma fermentans PG18]
Length = 538
Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats.
Identities = 95/461 (20%), Positives = 188/461 (40%), Gaps = 40/461 (8%)
Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71
+ EK + + V+ + ++ + + ++I E++ E ++ +F V +
Sbjct: 23 LIGYFEKEK-LHIEEVIKIFSEETTRIINKILDPNAEIVFELDKEKQEVHIFNNKTCVTK 81
Query: 72 VE----NYTCQISL---KVARDRDPSIDIGGVVSDPLPPMDFGR-------VAVQSAKQV 117
E + QIS K A+ R P + + + + +++
Sbjct: 82 DEELLLDLENQISFVGYKEAKVRMPKVKEDDEIKWEIDLGVLDKSKNPEAKKSLKIINSS 141
Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG---NVIVDLGNSDGVIRRDETISRE 174
I Q ++ ++ + ++ K+G+ + + NV + N + + ++
Sbjct: 142 IAQAIKTLQKKMVFEQYSSKIGQTVKVVLNSKNSNGSWNVQIVNSNVNAYLPAGLISTKR 201
Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234
PG I V E + Q+ +S P+ + + +PEI G+++V V R PG
Sbjct: 202 KANPGQYFDVVIEKVSEETKLSQIEVSLDSPKIVWNILQNNIPEIAEGLIEVVDVVRQPG 261
Query: 235 SRAKLAVF---SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINAL 291
R K+AV ++ ID G+ +G GSR+ + +L EKID++++ D +V N++
Sbjct: 262 ERVKVAVKLAEGANPDIDVRGSIIGENGSRIDLLSQKLDGEKIDVILYDEDIKKYVANSI 321
Query: 292 RPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350
P V+L DE + VIV E L+ AIG+RG N LAS LT +DII+ +
Sbjct: 322 SPIQAVDVILKDERENKYLVIVVPEHLTPAIGKRGVNAYLASSLTKVKLDIISITDAKAQ 381
Query: 351 ----------------RQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISE 394
+++ R Q ++ A+ + A+ F ++ +
Sbjct: 382 GIIFDETLVPTISATIKKEGPKIRYQKSNNNRRFNKKPANNIFAQSFDSIDVSNF--DQD 439
Query: 395 IASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSE 435
IA+ E +++ +Q + E + + E V
Sbjct: 440 IAAFELHEQDRLDSLQEDDSNFEELVKKIESEYAVENEVEN 480
>gi|15828674|ref|NP_326034.1| transcription elongation factor NusA [Mycoplasma pulmonis UAB CTIP]
gi|14089616|emb|CAC13376.1| N-UTILIZATION SUBSTANCE PROTEIN A [Mycoplasma pulmonis]
Length = 550
Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats.
Identities = 69/363 (19%), Positives = 157/363 (43%), Gaps = 24/363 (6%)
Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62
S ++ + ++ +K + V + ++ + ++ + +D+ + + E +++
Sbjct: 24 SNKTIDFFLSLENLSRDKKLKISTVKQIFQEAFFQVIKNDFDPDADLEIVYDDEKKEVTF 83
Query: 63 FRLLEVV------EEVENYTCQ------ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVA 110
+ +V E ++Y+ + + L AR + IG +V + +
Sbjct: 84 YNNNAIVIEDALEEADDDYSAEEMLVSFVRLSDARKEKSDVQIGDIVKKQIKHDELKLNE 143
Query: 111 VQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNV---IVDLGNSDGVIRR 167
V+ + Q + + + + K+G+ I ++ + +V + +
Sbjct: 144 VKKIFSIFQQNLAKEAKQSVLDFYSSKIGQKIQVKIEEFKNRGFFGSVVGDMETKVFLPN 203
Query: 168 DETISRENLRPGDRVKSYIYDVRREQRGPQ---VLLSRTHPQFMVKLFHMEVPEIYNGIV 224
E + G ++ Y + +E + +++S P ++ + EI NG +
Sbjct: 204 KEINKNSKIALGKKIDVYFIEFAKEFQNKSETLLIVSLNSPLEVINVLKETFEEIANGSI 263
Query: 225 QVKAVSRDPGSRAKLAVFSSD---SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281
+K ++R G R K+AV S ++ +G +G G R + + +L +EKID V++
Sbjct: 264 IIKKIARKAGIRTKIAVEKSHLASEGLNIIGTLIGQSGDRNKIISEKLNNEKIDFVIYKE 323
Query: 282 DSATFVINALRPAIVTKV-VLDEDVG--RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338
D F++ +L+PA V + + + V+VP Q+S+AIG+ G N L+S+L+
Sbjct: 324 DLQEFIVESLKPANVISIERVVPETHIPAFNVVVPNSQMSVAIGKAGMNTILSSELSQSR 383
Query: 339 IDI 341
I+I
Sbjct: 384 INI 386
>gi|254700793|ref|ZP_05162621.1| transcription elongation factor NusA [Brucella suis bv. 5 str. 513]
Length = 181
Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats.
Identities = 82/167 (49%), Positives = 114/167 (68%)
Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416
ER+ FM+A+NVDE++ +L +EGFA VEELA V EI+SI+GFDE+TA EIQ RAREY
Sbjct: 2 ERSNLFMEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREY 61
Query: 417 LEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSEN 476
LE I+ + +ELGV++EL +PG+ + + VA+GE+G+KTMED AG +VDDL+GW E
Sbjct: 62 LERIEAEQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRER 121
Query: 477 KGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523
K G+ G L+ + E M++ AR K GWI +E++A
Sbjct: 122 KDGDTINHSGVLTPFDLSRVDAEQMVLAARLKAGWITEEELAAASED 168
>gi|261751302|ref|ZP_05995011.1| transcription elongation factor NusA [Brucella suis bv. 5 str. 513]
gi|261741055|gb|EEY28981.1| transcription elongation factor NusA [Brucella suis bv. 5 str. 513]
Length = 174
Score = 151 bits (381), Expect = 3e-34, Method: Composition-based stats.
Identities = 79/161 (49%), Positives = 110/161 (68%)
Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422
M+A+NVDE++ +L +EGFA VEELA V EI+SI+GFDE+TA EIQ RAREYLE I+
Sbjct: 1 MEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREYLERIEA 60
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482
+ +ELGV++EL +PG+ + + VA+GE+G+KTMED AG +VDDL+GW E K G+
Sbjct: 61 EQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERKDGDTI 120
Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523
G L+ + E M++ AR K GWI +E++A
Sbjct: 121 NHSGVLTPFDLSRVDAEQMVLAARLKAGWITEEELAAASED 161
>gi|300508327|pdb|2KWP|A Chain A, Solution Structure Of The Aminoterminal Domain Of E. Coli
Nusa
Length = 129
Score = 151 bits (381), Expect = 3e-34, Method: Composition-based stats.
Identities = 47/124 (37%), Positives = 76/124 (61%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA
Sbjct: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
Query: 126 ERDR 129
ER
Sbjct: 122 ERAM 125
>gi|313678838|ref|YP_004056578.1| transcription termination factor nusA [Mycoplasma bovis PG45]
gi|312950148|gb|ADR24743.1| putative transcription termination factor nusA [Mycoplasma bovis
PG45]
Length = 544
Score = 150 bits (379), Expect = 5e-34, Method: Composition-based stats.
Identities = 80/385 (20%), Positives = 166/385 (43%), Gaps = 37/385 (9%)
Query: 17 AYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYT 76
EK ID ++ S+ ++ + + + ++I EI+ + ++ ++ +V VE+
Sbjct: 25 EKEK-IDLSILASIFSEEVTRIVQKNIDPEANIVFEIDEDNKEVHVYNTEAIV--VEDSE 81
Query: 77 CQ--------------ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAV-------QSAK 115
+ + L A+ I ++ + + + + + +
Sbjct: 82 FESVSDAEKVSLMLYNVPLSDAKKVKSDAQIDDLIKIEVDLLALSKSSNPVVQKTPKIIE 141
Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG---NVIVDLGNSDGVIRRDETIS 172
I+Q +++ ++ Y ++ +K+GE + NV + + + +
Sbjct: 142 SSILQAIKKLQKSIVYTKYLEKIGETVKVMFISKNTKGSWNVQIVDDGVMAHLPANYVSA 201
Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRD 232
+ + PG I V +E + Q+ +S P+ + K+ + +PEI +G++++ V R
Sbjct: 202 KRVINPGSYGDVVIERVEKETKLSQITVSLDSPKLIEKILYNNIPEINSGLIEIVNVQRI 261
Query: 233 PGSRAKLAVFSS--DSSIDPVGACVGMRGSRVQAVVTELRD-------EKIDIVVWSPDS 283
PG R K ++ + +D GA +G SR+ +++EL EK D++V + D
Sbjct: 262 PGERTKAVFRATPGNEHLDVYGAIIGHDSSRINLIISELNFGVNQADMEKFDVIVHTNDK 321
Query: 284 ATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342
F+ + P V +V +E VI K LS AIG++G N LAS+++ +DII
Sbjct: 322 KEFIRRCMLPGQVLDIVPKNESQNTFYVITIKAALSAAIGKKGANTMLASKVSHCNLDII 381
Query: 343 TEEEDSINRQKDFNERTQFFMQAIN 367
T EE + R +++N
Sbjct: 382 TVEEAMQKNISFDDSRIAEVEESLN 406
>gi|153812998|ref|ZP_01965666.1| hypothetical protein RUMOBE_03405 [Ruminococcus obeum ATCC 29174]
gi|149830945|gb|EDM86035.1| hypothetical protein RUMOBE_03405 [Ruminococcus obeum ATCC 29174]
Length = 162
Score = 149 bits (376), Expect = 1e-33, Method: Composition-based stats.
Identities = 48/143 (33%), Positives = 86/143 (60%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
EL++ D + EK+I +D +L + S+ +A ++ +G ++ V INPET D S++
Sbjct: 2 NKELMEALDILEKEKNISKDTLLGAIEQSLIQACKNHFGKADNVHVTINPETCDFSVYAE 61
Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125
EV E V++ +ISL A+ + + ++G ++ + +FGR+A Q+AK VI+QK+RE
Sbjct: 62 REVKEFVDDPALEISLVDAQKINTNAELGDMIKVEIHSKEFGRIATQNAKNVILQKIREE 121
Query: 126 ERDRQYLEFKDKVGEIISGTVKR 148
ER Y ++ E+++G V+R
Sbjct: 122 ERKVLYDQYYGMEKEVVTGIVQR 144
>gi|254671946|emb|CBA04328.1| N utilization substance protein A [Neisseria meningitidis alpha275]
Length = 186
Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats.
Identities = 77/207 (37%), Positives = 121/207 (58%), Gaps = 21/207 (10%)
Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVD 369
+IV + QL+LAIGR GQNVRLAS LTGW ++I+T E + + FM +NVD
Sbjct: 1 MIVDENQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAIRRLFMDHLNVD 60
Query: 370 EIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIR 429
E A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + + I ++K+
Sbjct: 61 EETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAILTMAIAAEEKLG 120
Query: 430 ELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLS 489
E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ +
Sbjct: 121 E--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELIEIT--------------- 163
Query: 490 SLGTPKDQVESMIIHARYKMGWIEKEK 516
G ++ +++I+ AR W ++K
Sbjct: 164 --GVNEETAKAVILTAREH--WFTEDK 186
>gi|13937007|gb|AAK50007.1|AF363237_1 transcription termination-antitermination factor [Homo sapiens]
Length = 172
Score = 147 bits (371), Expect = 4e-33, Method: Composition-based stats.
Identities = 61/160 (38%), Positives = 100/160 (62%), Gaps = 1/160 (0%)
Query: 146 VKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHP 205
+ + ++VD N++ ++ + E I + R G+ +++ I V E P+++LSRT P
Sbjct: 1 YQVWKREVLLVDDDNNELILPKSEQIPADQYRKGETIRAVIERVDNENNNPKIILSRTSP 60
Query: 206 QFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAV 265
F+ +L EVPEI +G++ +K V+R PG RAK+AV S D IDPVGACVG+RGSRV +
Sbjct: 61 TFLERLLEQEVPEIADGLIAIKKVARMPGERAKIAVESFDERIDPVGACVGVRGSRVHGI 120
Query: 266 VTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305
V EL +E ID+V W+ ++ + + L+ ++ + DE+
Sbjct: 121 VRELCNENIDVVHWTANT-KLLSSVLKSCPISSIAPDEET 159
>gi|261886077|ref|ZP_06010116.1| transcription elongation factor NusA [Campylobacter fetus subsp.
venerealis str. Azul-94]
Length = 200
Score = 146 bits (369), Expect = 7e-33, Method: Composition-based stats.
Identities = 75/184 (40%), Positives = 110/184 (59%), Gaps = 3/184 (1%)
Query: 168 DETISRENLRPGDRVKSYIYDVRREQRG-PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQV 226
I E + G+ VK+ I VR +++ +V LSRT P+F+ L EVPEI +G V +
Sbjct: 2 KNRIKNEKFKVGNVVKAVIKSVRLDKKDGIKVELSRTSPKFLEALLKAEVPEIKDGGVII 61
Query: 227 KAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATF 286
+ +R PG +AK+A+FS+ +ID VGA VG++G R+ AV +EL E ID + +S + A F
Sbjct: 62 QNSARIPGKKAKIALFSTTPNIDAVGATVGIKGVRINAVSSELNGENIDAIEYSSEPAIF 121
Query: 287 VINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346
V AL PAIV+ V +D+ + V + EQ S AIG G N+RLAS L+G+ I +
Sbjct: 122 VARALAPAIVSSVKIDD--KKAIVSLVPEQKSKAIGVSGINIRLASMLSGFEIILHEIGA 179
Query: 347 DSIN 350
+
Sbjct: 180 PTQE 183
>gi|148377961|ref|YP_001256837.1| transcription elongation factor NusA [Mycoplasma agalactiae PG2]
gi|148292007|emb|CAL59399.1| Transcription elongation protein NusA [Mycoplasma agalactiae PG2]
Length = 544
Score = 145 bits (367), Expect = 1e-32, Method: Composition-based stats.
Identities = 95/484 (19%), Positives = 198/484 (40%), Gaps = 63/484 (13%)
Query: 17 AYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR-LLEVVEEVE-N 74
EK ++ V+ + ++ + + + ++I EI+ E ++ ++ VV++ E +
Sbjct: 25 EKEK-LELSVLADIFSEEVTRIVQKNIDPEANIVFEIDEENKEVHVYNTEAIVVDDSEFD 83
Query: 75 YTCQ----------ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAV-------QSAKQV 117
+ + L VA+ ++ + + + + + +
Sbjct: 84 DLSEADKVSLMLYNVPLSVAKKVKNDANVDDTIKIEIDLLALSKSTNPVVQKTPKIIESS 143
Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG---NVIVDLGNSDGVIRRDETISRE 174
I+Q +++ ++ Y ++ +K+GE + T + NV + + + ++
Sbjct: 144 ILQAIKKLQKSIVYTKYLEKIGETVKVTFISMNSKGSWNVQIVDDGVIAHLPANYVSAKR 203
Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234
+ PG I V ++ + Q+ +S P+ + K+ + +PEI +G++++ V R PG
Sbjct: 204 VINPGSYGDVVIERVEKDTKLSQITVSLDSPKLIEKILYNNIPEISSGLIEIVNVQRIPG 263
Query: 235 SRAKLAVFSS--DSSIDPVGACVGMRGSRVQAVVTELRD-------EKIDIVVWSPDSAT 285
R K +S + +D GA +G SR+ +++E+ EK D++V++ D
Sbjct: 264 ERTKAVFKASAGNEHLDVYGAIIGQDSSRINLIISEMNQGVNQADKEKFDVIVYTSDKKE 323
Query: 286 FVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344
F+ + P V +V +E VI K LS AIG++G N LAS+++ +DIIT
Sbjct: 324 FIRRCMLPGQVVDIVPKNESQNSFYVITIKAGLSAAIGKKGANTMLASKVSHSNLDIITV 383
Query: 345 EEDSINRQKDFNERTQFFMQAINV-----------------------DEIIAHLLVAEGF 381
EE + +++N L EGF
Sbjct: 384 EEAKQKNIPFDESKIAEVEESLNSFRRYGATKKAPTRAFNNNRRKTNSYFENLDLSLEGF 443
Query: 382 ADV------EELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSE 435
+E A S ++E FDE +E +E + ++ +K+ E+ E
Sbjct: 444 DKDILAFREQEQAFFDESNSQNME-FDELIQQYNSESVKENIESDERSIDEKLNEIQREE 502
Query: 436 ELCS 439
+L +
Sbjct: 503 KLTA 506
>gi|291320687|ref|YP_003515952.1| transcription elongation protein NusA [Mycoplasma agalactiae]
gi|290753023|emb|CBH40999.1| Transcription elongation protein NusA [Mycoplasma agalactiae]
Length = 544
Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats.
Identities = 98/484 (20%), Positives = 205/484 (42%), Gaps = 63/484 (13%)
Query: 17 AYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR-LLEVVEEVE-N 74
EK ++ V+ + ++ + + + ++I EI+ E ++ ++ VV++ E +
Sbjct: 25 EKEK-LELSVLADIFSEEVTRIVQKNIDPEANIVFEIDEENKEVHVYNTEAIVVDDSEFD 83
Query: 75 YTCQ----------ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAV-------QSAKQV 117
+ + L VA+ +++ + + + + + +
Sbjct: 84 DLSESDKVSLMLYNVPLSVAKKVKSDVNVDDTIKIEIDLLALSKSTNPVVQKTPKIIESS 143
Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG---NVIVDLGNSDGVIRRDETISRE 174
I+Q +++ ++ Y ++ +K+GE + T NV + + + ++
Sbjct: 144 ILQAIKKLQKSIVYTKYLEKIGETVKVTFISKNSKGSWNVQIVDDGVIAHLPANYVSAKR 203
Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234
+ PG I V ++ + Q+ +S P+ + K+ + +PEI +G++++ V R PG
Sbjct: 204 VINPGSYGDVVIERVEKDTKLSQITVSLDSPKLIEKILYNNIPEISSGLIEIVNVQRIPG 263
Query: 235 SRAKLAVFSS--DSSIDPVGACVGMRGSRVQAVVTELRD-------EKIDIVVWSPDSAT 285
R K +S + +D GA +G SR+ +++E+ EK D++V++ D
Sbjct: 264 ERTKAVFNASAGNEHLDVYGAIIGQDSSRINLIISEMNQGVNQADMEKFDVIVYTSDKKE 323
Query: 286 FVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT- 343
F+ + P V +V +E VI K LS AIG++G N LAS+++ +DIIT
Sbjct: 324 FIRRCMLPGQVVDIVPKNESQNSFYVITIKAGLSAAIGKKGANTMLASKVSHSNLDIITV 383
Query: 344 ----------------EEEDSINRQKDFNERTQFFMQAINVDEIIAHL------LVAEGF 381
E E+S+N + + + +A N + + L EGF
Sbjct: 384 EEAKLKNILFDESKIAEVEESLNSFRRYGATKKAPARAFNNNRRKTNSYFENLDLSLEGF 443
Query: 382 ADV------EELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSE 435
+E A S ++E FDE +E +E + ++ +K+ E+ E
Sbjct: 444 DKDILAFREQEQAFFDESNSQNME-FDELIQQYNSESVKENVESDERSIDEKLNEIQKEE 502
Query: 436 ELCS 439
+L +
Sbjct: 503 KLTA 506
>gi|254434624|ref|ZP_05048132.1| transcription termination factor NusA, C-terminal duplication
domain protein [Nitrosococcus oceani AFC27]
gi|207090957|gb|EDZ68228.1| transcription termination factor NusA, C-terminal duplication
domain protein [Nitrosococcus oceani AFC27]
Length = 199
Score = 143 bits (362), Expect = 5e-32, Method: Composition-based stats.
Identities = 75/218 (34%), Positives = 117/218 (53%), Gaps = 19/218 (8%)
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
++V V + LS AIGR GQN+RLASQLTGW ++++TE+E + + Q FM+ ++
Sbjct: 1 MDVAVAEGNLSQAIGRGGQNIRLASQLTGWELNVMTEQEAEEKGESEAKSLQQMFMEQLD 60
Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427
VDE +A +LV EGF+ +EE+A V EI +IE FD + E++ RAR+ L I ++
Sbjct: 61 VDEEVAAILVHEGFSSIEEMAYVPEQEILAIEEFDSQIVQELRNRARDVLLTRAIANEET 120
Query: 428 IRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGF 487
I + + +EL + ID + AL GI T E+LA +VD+L+
Sbjct: 121 IETVQLDQELLDMEEIDHGLASALASKGIVTKENLAEQAVDELMEIE------------- 167
Query: 488 LSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525
G +++ +I+ AR W EK +E +
Sbjct: 168 ----GMNREKAARLIMAARES--WFVSEKQDEETEERQ 199
>gi|215428279|ref|ZP_03426198.1| transcription elongation factor NusA [Mycobacterium tuberculosis
T92]
gi|289571028|ref|ZP_06451255.1| transcription elongation factor NusA [Mycobacterium tuberculosis
T17]
gi|289544782|gb|EFD48430.1| transcription elongation factor NusA [Mycobacterium tuberculosis
T17]
Length = 159
Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats.
Identities = 70/138 (50%), Positives = 95/138 (68%), Gaps = 1/138 (0%)
Query: 208 MVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVT 267
M KLF +EVPEI +G V++ AV+R+ G R+K+AV S+ + ++ GAC+G G RV+ V++
Sbjct: 1 MRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMGQRVRNVMS 60
Query: 268 ELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQ 326
EL EKIDI+ + D A FV NAL PA V V +D+ V+VP QLSLAIG+ GQ
Sbjct: 61 ELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLSLAIGKEGQ 120
Query: 327 NVRLASQLTGWTIDIITE 344
N RLA++LTGW IDI +
Sbjct: 121 NARLAARLTGWRIDIRGD 138
>gi|255077143|ref|XP_002502222.1| predicted protein [Micromonas sp. RCC299]
gi|226517487|gb|ACO63480.1| predicted protein [Micromonas sp. RCC299]
Length = 897
Score = 137 bits (346), Expect = 4e-30, Method: Composition-based stats.
Identities = 83/356 (23%), Positives = 146/356 (41%), Gaps = 40/356 (11%)
Query: 28 LSVMADSIQKAARS-LYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARD 86
L ++ +I +A R Y E++P R +V ++ +++ +A+
Sbjct: 329 LEAVSRAIDRAYRKLRYSA----FAEMDP--------RGRDVCVDINVAEGTVAV-LAQR 375
Query: 87 RDPSIDIGGVVSDPLPPMDF------GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGE 140
GG V D R ++ + +++ E ++ K G+
Sbjct: 376 IGR----GGTVEWETDDTDAFLEAYGKRHMIRKIAHMYTEELNEQVSAVAADSYRAKRGQ 431
Query: 141 IISGTVKRVEYGNVIVD--LGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE----QR 194
++ TV + + + +E+I + G+RV + + +V R
Sbjct: 432 MVECTVVAEGRRGEYLLRLDDGAMACLPEEESIPGKKYSQGERVCALVMEVEDRTWAADR 491
Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS---IDPV 251
V++S + ++ EVPE+ G V +K+V+R G +K+AV + + DPV
Sbjct: 492 RAPVIVSTAIAGLLAEVLAAEVPEVARGDVVIKSVARVSGKMSKVAVARQEGAEKVFDPV 551
Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV------ 305
ACVG+ SR++A+ L E I+ WS + V AL PA V +VV E+
Sbjct: 552 LACVGVENSRLRAIRERLGGEVCQILTWSDNREDMVAEALFPAAVHRVVKAEEDDMDGRA 611
Query: 306 -GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+ V + + AIG G NV+LA+ LTG I I EE ++R
Sbjct: 612 LDKFIAYVSRFDEAKAIGAGGVNVKLAAALTGCFILIERHEEGGGAGGGWGDQRAN 667
>gi|222871752|gb|EEF08883.1| predicted protein [Populus trichocarpa]
Length = 274
Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats.
Identities = 69/164 (42%), Positives = 113/164 (68%), Gaps = 2/164 (1%)
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367
++V+V +E L+++IGR GQNVRLAS+LTGW I+I+T+EE + + ++ + FM ++
Sbjct: 1 MDVVVDEENLAVSIGRSGQNVRLASELTGWQINIMTQEESAQKQAEESEVVRKLFMAKLD 60
Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427
VDE +A +L+ EGF+ +EE+A V ISE+ IE FDE+T E++ RAR+ L +++ ++K
Sbjct: 61 VDEEVADILIEEGFSSLEEVAYVPISEMMEIEAFDEDTVNELRNRARDALLTMELAREEK 120
Query: 428 IRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471
+ E VS++L S+ G+ ++ L E I T +DLA +VD+L
Sbjct: 121 VEE--VSQDLRSLDGLTPELIGKLAEGNIHTRDDLAELAVDELA 162
>gi|258615950|ref|ZP_05713720.1| transcription elongation factor NusA [Enterococcus faecium DO]
Length = 171
Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats.
Identities = 71/185 (38%), Positives = 101/185 (54%), Gaps = 19/185 (10%)
Query: 225 QVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSA 284
++ +++R+ G R+K+AV S+D +ID VG CVG +G RVQA+V EL+ E +DIV W+ D A
Sbjct: 1 EIVSIAREAGDRSKVAVRSNDPNIDAVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPA 60
Query: 285 TFVINALRPAIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343
F+ NAL PA V V+ DE V+VP QLSLAIG+RGQN RLA++LT IDI +
Sbjct: 61 VFIANALNPAQVMDVIFDETNPKACTVVVPDYQLSLAIGKRGQNARLAAKLTNHKIDIKS 120
Query: 344 EEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403
E + + E + Q +E+ +V + F+
Sbjct: 121 ESDMT--------EFYENQEQQKETEELHDEAIVQSDLT----------DDEYETIAFNN 162
Query: 404 ETAVE 408
ET E
Sbjct: 163 ETVEE 167
>gi|328479976|gb|EGF49013.1| transcription elongation factor NusA [Lactobacillus rhamnosus MTCC
5462]
Length = 117
Score = 130 bits (328), Expect = 4e-28, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 70/114 (61%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E++Q DA+ EK + ++VV+ + ++ A + Y ++ VE +P+ GDI ++ + E
Sbjct: 4 EMIQALDALEQEKGVKKEVVIEALEAALVSAYKRNYNQAQNVDVEFDPKQGDIHVYAVKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121
V +EV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+
Sbjct: 64 VTDEVFDSRLEVSLKDALAINKAYEIGDQIKFEVTPKDFGRIAAQTAKQVIMQR 117
>gi|409843|gb|AAD10598.1| Significant homology to E.coli protein NusA X00513 [Mycoplasma
genitalium]
Length = 217
Score = 129 bits (325), Expect = 1e-27, Method: Composition-based stats.
Identities = 62/217 (28%), Positives = 107/217 (49%), Gaps = 10/217 (4%)
Query: 52 EINPETGDISLFRLLEVV-EEVENYT--CQISLKVARDRDPSIDIGGVVSDPLPPMDFGR 108
IN + G I++ +L VV +E E+Y +I L+ A + S+ +G V+ P+P +
Sbjct: 1 NINFDKGIINVEQLFNVVSDENEDYDDFLEIPLQAANKINSSLQLGDVLRKPIPLKNISS 60
Query: 109 VAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG------NVIVDLGNSD 162
+ + QK+ E EF +VGE+I V+ ++ I++L +
Sbjct: 61 DLINKMIAIFNQKISETNFKAVMSEFSSEVGEVIEAKVEDIDTNKEGGLKGYIINLETTK 120
Query: 163 GVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNG 222
G I + E E L G + I +++R+ + LSR+ + + L PEI NG
Sbjct: 121 GYISKRELSKGERLEIGKKYLFVIKEIQRQASLWPITLSRSDTRLLQFLLTSNTPEIENG 180
Query: 223 IVQVKAVSRDPGSRAKLAVFSSDS-SIDPVGACVGMR 258
+ +K + R PG ++K+AV S+D+ S DPV A +G +
Sbjct: 181 TIVIKKIERSPGVKSKIAVISNDACSWDPVAAILGPK 217
>gi|56807387|ref|ZP_00365366.1| COG0195: Transcription elongation factor [Streptococcus pyogenes
M49 591]
Length = 154
Score = 128 bits (323), Expect = 2e-27, Method: Composition-based stats.
Identities = 52/151 (34%), Positives = 87/151 (57%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E+L+ + EK ID+ ++ + +S++ A + YG +E N +T D +F + E
Sbjct: 4 EMLEAFRILEEEKHIDKADIIDAVTESLKSAYKRRYGQSESCVIEFNEKTADFQVFTVRE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
VVEEV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R R
Sbjct: 64 VVEEVFDSRLEISLKDALAISSAYELGDKIRFEESVNEFGRVAAQSAKQTIMEKMRRQMR 123
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDL 158
+ + E+K+ GEI++GTV+R + + V+L
Sbjct: 124 EVMFNEYKEHEGEIMTGTVERFDQRFIYVNL 154
>gi|213021473|ref|ZP_03335920.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
Length = 156
Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats.
Identities = 43/171 (25%), Positives = 80/171 (46%), Gaps = 18/171 (10%)
Query: 345 EEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404
++ Q + + + F + +++DE A +LV EGF+ +EELA V + E+ I+G DE
Sbjct: 3 DDLQAKHQAEAHAAIEIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEP 62
Query: 405 TAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAG 464
T ++ RA+ L + + + + +++L ++ G+D + L G+ T+EDLA
Sbjct: 63 TVEALRERAKNALATLAQDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLAD 122
Query: 465 CSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515
+DDL G ++ +I+ AR + W E
Sbjct: 123 QGIDDLADIE-----------------GLTDEKAGELIMAAR-NICWFGDE 155
>gi|169245954|gb|ACA50975.1| nucleic acid binding protein [Mycobacterium marinum DL240490]
Length = 182
Score = 126 bits (316), Expect = 9e-27, Method: Composition-based stats.
Identities = 55/134 (41%), Positives = 76/134 (56%), Gaps = 3/134 (2%)
Query: 216 VPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKID 275
VPE+ +V + A++R PG RAK+AV S + I+PV C+G G R+ V L E+I
Sbjct: 42 VPELAQQLVDIVAIARIPGVRAKVAVRSCVAGINPVSVCIGWGGLRIADVEKGLGGERIH 101
Query: 276 IVVWSPDSATFVINALR-PAIVTKVVLDEDV--GRIEVIVPKEQLSLAIGRRGQNVRLAS 332
+V + D AT+VINAL P T + RI V V +G+ GQNVRLAS
Sbjct: 102 VVAYHVDPATYVINALGCPGTGTGAAAAAEERSRRIRVRVEAHDYPRTVGKAGQNVRLAS 161
Query: 333 QLTGWTIDIITEEE 346
+LTG I+I+ E+
Sbjct: 162 KLTGQKIEILVEKS 175
>gi|209418048|ref|YP_002274077.1| nucleic acid binding protein [Mycobacterium liflandii 128FXT]
gi|169409180|gb|ACA57586.1| nucleic acid binding protein [Mycobacterium liflandii 128FXT]
Length = 184
Score = 125 bits (315), Expect = 1e-26, Method: Composition-based stats.
Identities = 54/136 (39%), Positives = 75/136 (55%), Gaps = 5/136 (3%)
Query: 216 VPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKID 275
VPE+ +V + A++R PG RAK+AV S + I+PV C+G G R+ V L E+I
Sbjct: 42 VPELAQQLVDIVAIARIPGVRAKVAVRSRVAGINPVSVCIGWGGLRIADVEKGLGGERIH 101
Query: 276 IVVWSPDSATFVINALR-----PAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRL 330
+V + D AT+VINAL +E RI V V +G+ GQNVRL
Sbjct: 102 VVAYHVDPATYVINALGCPGTGTGTGAAAAAEERSRRIRVRVEAHDYPRTVGKAGQNVRL 161
Query: 331 ASQLTGWTIDIITEEE 346
AS+LTG I+I+ E+
Sbjct: 162 ASKLTGQKIEILVEKS 177
>gi|49146092|ref|YP_025530.1| nucleic acid binding protein [Mycobacterium ulcerans Agy99]
gi|42414726|emb|CAE46819.1| possible nucleic acid binding protein [Mycobacterium ulcerans
Agy99]
Length = 182
Score = 125 bits (315), Expect = 2e-26, Method: Composition-based stats.
Identities = 54/134 (40%), Positives = 75/134 (55%), Gaps = 3/134 (2%)
Query: 216 VPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKID 275
VPE+ +V + A++R PG RAK+AV S + I+PV C+G G R+ V L E+I
Sbjct: 42 VPELAQQLVDIVAIARIPGVRAKVAVRSRVAGINPVSVCIGWGGLRIADVEKGLGGERIH 101
Query: 276 IVVWSPDSATFVINALR-PAIVTKVVLDEDV--GRIEVIVPKEQLSLAIGRRGQNVRLAS 332
+V + D AT+VIN L P T + RI V V +G+ GQNVRLAS
Sbjct: 102 VVAYHVDPATYVINVLGCPGTGTGAAAAAEERSRRIRVRVEAHDYPRTVGKAGQNVRLAS 161
Query: 333 QLTGWTIDIITEEE 346
+LTG I+I+ E+
Sbjct: 162 KLTGQKIEILVEKS 175
>gi|296163996|ref|ZP_06846621.1| transcription elongation factor NusA [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295900648|gb|EFG80029.1| transcription elongation factor NusA [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 148
Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats.
Identities = 49/144 (34%), Positives = 74/144 (51%)
Query: 216 VPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKID 275
+PE+ NG V++ AV+R+PG AK+AV S I+ V C+G G R+ V L E +
Sbjct: 1 MPELANGSVEIIAVAREPGLLAKVAVRSRVRGINAVAVCIGWGGLRIADVEKRLCGEHVS 60
Query: 276 IVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLT 335
I+ + D+A +VINAL V++ + RI V V + + A+G+ G N+RL QLT
Sbjct: 61 IIAYDSDTARYVINALGIKSAIAEVINPEQRRIRVYVNPDDYARALGKVGHNLRLVRQLT 120
Query: 336 GWTIDIITEEEDSINRQKDFNERT 359
+I I T +
Sbjct: 121 SCSIHIRTATGANRAPMVAPPGSC 144
>gi|308804463|ref|XP_003079544.1| putative transcriptional termination/an (ISS) [Ostreococcus tauri]
gi|116057999|emb|CAL54202.1| putative transcriptional termination/an (ISS) [Ostreococcus tauri]
Length = 615
Score = 125 bits (313), Expect = 3e-26, Method: Composition-based stats.
Identities = 87/363 (23%), Positives = 145/363 (39%), Gaps = 56/363 (15%)
Query: 13 ADAVAYEKS---IDRDVVLSVMADSIQKAARSLYGTMS------------DIRVEINPET 57
A+A +KS D + L +A +I + + G+ D+ V+I+ E
Sbjct: 216 LRALAKDKSGYEADTGMHLEAIARAITTMYKEIPGSALRLIQRERRDARLDVSVDIDVER 275
Query: 58 GDI----SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQS 113
G +F VE + T + + + R ++
Sbjct: 276 GRFAVLVQVFGRSGTVEREYDDTK------------------FFTFNIRRQNRMRTLIRY 317
Query: 114 AKQVIIQKVREAERDRQYLEFKDKVGEIISGTV-KRVEYGNVIVDL-GNSDGVIRRDETI 171
+ + V + +++G + GT R E G+ +VD+ + GVI +E +
Sbjct: 318 MSEEMKSGV----ARMATENYVEQIGSLCVGTTRFRSEDGSWMVDIADGAAGVIPPEEQL 373
Query: 172 SREN---LRPGDRVKSYIYDVRRE----QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224
N L+ GD V Y+ DV + + V+LS T P + + EVPEI G V
Sbjct: 374 QLFNDRQLKQGDEVSCYVLDVDQNLFTGREQTPVVLSMTIPAVVAAIIRDEVPEIAKGDV 433
Query: 225 QVKAVSRDPGSRAKLAVFSSDSS--IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPD 282
++KA++R G K+AV S + + CVG+ R++ + E + + WS D
Sbjct: 434 EIKAIARIAGKITKVAVAPVPGSSIWNTIDVCVGVDQVRLKRIRERAGGEVVHFINWSDD 493
Query: 283 SATFVINALRPAIVTKV---VLDEDVG-RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338
+ V AL PA V V D + V + + AIG G NV+L + LT
Sbjct: 494 PSEVVKAALFPADVKSVEKSFPDGSQRPKFTAYVSEFDVKRAIGTNGNNVKLCAALTNSF 553
Query: 339 IDI 341
+ I
Sbjct: 554 VVI 556
>gi|331006261|ref|ZP_08329581.1| Transcription termination protein NusA [gamma proteobacterium
IMCC1989]
gi|330419950|gb|EGG94296.1| Transcription termination protein NusA [gamma proteobacterium
IMCC1989]
Length = 159
Score = 125 bits (313), Expect = 3e-26, Method: Composition-based stats.
Identities = 50/178 (28%), Positives = 97/178 (54%), Gaps = 19/178 (10%)
Query: 342 ITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF 401
++ E+ ++++ + + FM+A++VDE +A +LV EGF +EE+A V + E+ IEGF
Sbjct: 1 MSVEQWEDKQEQEAGGQVELFMEALDVDEDVAAVLVEEGFTSLEEVAYVPLEEMLGIEGF 60
Query: 402 DEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMED 461
DE+ A E++ RA++ L + ++K+ +E+L ++ G+D+ + L + G+ MED
Sbjct: 61 DEDIANELRSRAKDTLLTKALASEEKLEGAEPAEDLVAMEGMDNALAAVLAKRGVVCMED 120
Query: 462 LAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVAD 519
LA +VD+LL G +++ ++I+ AR W + ++
Sbjct: 121 LAEQAVDELLDID-----------------GMTEERAAALIMKAREP--WFASSETSE 159
>gi|145346768|ref|XP_001417855.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578083|gb|ABO96148.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 710
Score = 123 bits (310), Expect = 5e-26, Method: Composition-based stats.
Identities = 84/392 (21%), Positives = 156/392 (39%), Gaps = 60/392 (15%)
Query: 13 ADAVAYEKSIDRDVV---LSVMADSIQKAAR-----------SLYGTMSDIRVEINPETG 58
A+A EK V L +A +I + R D+ V+I+ + G
Sbjct: 216 LRALAKEKEGYEADVGLHLEAIARAIDRGYRDMRGSALTVLQKEVRARIDVSVDIDVQRG 275
Query: 59 DISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDF------GRVAVQ 112
++ L++VV GG V F + ++
Sbjct: 276 RFAV--LVQVVGR----------------------GGTVEREYDDTKFFTFNVRRQNRMR 311
Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV-KRVEYGNVIVDL-GNSDGVIRRDET 170
+ + + ++++ +F ++G ++ GT+ R E G+ ++D+ G + GVI +E
Sbjct: 312 TLIRYMSEEIKTGVARLATEDFVGQIGNVVDGTLRFRTETGSWMMDIKGGAAGVIPPEEQ 371
Query: 171 ISREN---LRPGDRVKSYIYDVRRE----QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGI 223
+ N L+ GD + ++ DV + + V+LS T P + + EVPE+ G
Sbjct: 372 LLTYNDLPLKQGDELSCFVLDVDQNLFTGREQTPVVLSMTIPALVGAIIREEVPEVARGE 431
Query: 224 VQVKAVSRDPGSRAKLAVFSSDSSI---DPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280
+++K+++R G K+AV + S + V C+G S ++ + E + + WS
Sbjct: 432 IEIKSIARMAGKVTKVAVALREGSTSWSNAVETCLGEDQSILRRIRERCGGEVVHFLPWS 491
Query: 281 PDSATFVINALRPAIVTKVVLDE----DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG 336
D A + ++L PA V +V + V + L AIG G NV+L + LT
Sbjct: 492 DDPAELIKSSLFPAEVLRVEESFPDGTQKRKFTAYVKEVDLRRAIGAGGNNVKLCASLTN 551
Query: 337 WTIDIITEEEDSINRQKDFNERTQFFMQAINV 368
I I +E +++
Sbjct: 552 AFIVIEVDETAGNTQRRGSFNDDLDDSYDSGF 583
>gi|303279869|ref|XP_003059227.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459063|gb|EEH56359.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 511
Score = 119 bits (299), Expect = 9e-25, Method: Composition-based stats.
Identities = 64/261 (24%), Positives = 106/261 (40%), Gaps = 20/261 (7%)
Query: 111 VQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVD--LGNSDGVIRRD 168
++ ++ E ++ + GE++ TV + + + +
Sbjct: 2 MRKLAYAFTDELSECVAATAANSYRVRTGEMVEATVVSEGRRGEYLLKLDDGAFACLPAE 61
Query: 169 ETISRENLRPGDRVKSYIYDVRRE----QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224
E I + GDRV + + V + R V++S + ++ EVPE+ G V
Sbjct: 62 EGIPEKRYGQGDRVSALVLGVEDQTWAADRRAPVVVSTAIAGLLAEVLKKEVPEVATGDV 121
Query: 225 QVKAVSRDPGSRAKLAVFSSDS---SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281
+++V+R G +K+AV D + DPV ACVG SR+ A+ L E I+ WS
Sbjct: 122 VIRSVARVSGKMSKVAVSRRDGAVGTWDPVLACVGENNSRMLAIRERLGGETCQILTWSD 181
Query: 282 DSATFVINALRPAIVTKVVLDEDV-----------GRIEVIVPKEQLSLAIGRRGQNVRL 330
V AL PA V +V + + V + + AIG G NV+L
Sbjct: 182 VQEEMVAEALFPAQVVRVDKALEEADEHGGKEFAMDKYVAYVNQFDEAKAIGAGGINVKL 241
Query: 331 ASQLTGWTIDIITEEEDSINR 351
A+ L G I I E + +
Sbjct: 242 AAALCGCFILIERYEPGNAHE 262
>gi|118795363|ref|XP_561027.4| Anopheles gambiae str. PEST AGAP012738-PA [Anopheles gambiae str.
PEST]
gi|116133283|gb|EAL42227.2| AGAP012738-PA [Anopheles gambiae str. PEST]
Length = 129
Score = 114 bits (286), Expect = 3e-23, Method: Composition-based stats.
Identities = 50/126 (39%), Positives = 81/126 (64%), Gaps = 1/126 (0%)
Query: 147 KRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQ 206
+++D ++ ++ ++ I + R GD V++ I V + + PQ+++SRT P+
Sbjct: 2 HIRHKHVILLDDEGNEFILPKENQIPSDFFRKGDSVRAVIESVDKGSK-PQIIVSRTAPK 60
Query: 207 FMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVV 266
F+ KL +E+PEI +G + +K V R PG +AK+AV + D IDPVGACVG++GSR+ VV
Sbjct: 61 FLEKLLELEIPEIQDGTIILKKVVRIPGEKAKIAVDAYDDRIDPVGACVGVKGSRIHGVV 120
Query: 267 TELRDE 272
ELR+E
Sbjct: 121 RELRNE 126
>gi|153873980|ref|ZP_02002373.1| transcription elongation factor NusA [Beggiatoa sp. PS]
gi|152069557|gb|EDN67628.1| transcription elongation factor NusA [Beggiatoa sp. PS]
Length = 99
Score = 113 bits (282), Expect = 9e-23, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
++L + D V+ EK + ++V+ + + +I A + Y D+RV I+ TGD FR
Sbjct: 2 NKDILLVVDVVSNEKGVSKEVIFNALECAIASATKKRYEGEVDVRVHIDRRTGDYKAFRR 61
Query: 66 LEVVEEVEN---YTCQISLKVARDRDPSIDIGGVVS 98
+ VEE E Q++L A+ +P+I IG
Sbjct: 62 WQAVEEEEELDSPHTQMNLTEAQIHNPNIAIGEWFE 97
>gi|254993851|ref|ZP_05276041.1| transcription elongation factor NusA [Listeria monocytogenes FSL
J2-064]
Length = 104
Score = 110 bits (274), Expect = 8e-22, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 53/101 (52%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E
Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGR 108
VE+V + +IS++ A +P G VV + P DFGR
Sbjct: 64 AVEQVFDSRLEISMEEAHKLNPVYKPGDVVELEVTPKDFGR 104
>gi|56808097|ref|ZP_00365889.1| COG0195: Transcription elongation factor [Streptococcus pyogenes
M49 591]
Length = 164
Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats.
Identities = 58/144 (40%), Positives = 83/144 (57%), Gaps = 15/144 (10%)
Query: 226 VKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRD-------------- 271
+ +VSR+ G R K+AV S + ++D +G VG GS ++ V+++
Sbjct: 1 MMSVSREAGDRTKVAVRSHNPNVDAIGTMVGRGGSNIKKVISKFHPKRVDAKTGLEIPVE 60
Query: 272 EKIDIVVWSPDSATFVINALRPAIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRL 330
E ID++ W D A F+ NA+ PA V V+ D ED+ R V+VP +LSLAIGRRGQNVRL
Sbjct: 61 ENIDVIQWVDDPAEFIYNAIAPAEVDMVLFDDEDLKRATVVVPDSKLSLAIGRRGQNVRL 120
Query: 331 ASQLTGWTIDIITEEEDSINRQKD 354
A+ LTG+ IDI + E +
Sbjct: 121 AAHLTGYRIDIKSASEYDRLEAEK 144
>gi|207109944|ref|ZP_03244106.1| transcription elongation factor NusA [Helicobacter pylori
HPKX_438_CA4C1]
Length = 127
Score = 103 bits (257), Expect = 8e-20, Method: Composition-based stats.
Identities = 42/122 (34%), Positives = 74/122 (60%), Gaps = 1/122 (0%)
Query: 152 GNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVK 210
N +++ GV+ I E+ + GD +K+ + V+R ++G + LSRT P+ +
Sbjct: 1 QNTFIEIEQQFQGVLSMRHRIKGESFKVGDSIKAVLTQVKRTKKGLLLELSRTTPKMLEA 60
Query: 211 LFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELR 270
L +EVPEI + +++ +R PG+RAK++ FS ++ IDP+GA VG++G R+ A+ EL
Sbjct: 61 LLELEVPEIKDKEIEIIHCARIPGNRAKVSFFSHNARIDPIGAAVGVKGVRINAISNELN 120
Query: 271 DE 272
+
Sbjct: 121 KD 122
>gi|33322909|gb|AAQ07191.1|AF496499_1 transcription termination/antitermination factor [Lactobacillus
delbrueckii subsp. lactis]
Length = 95
Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats.
Identities = 45/95 (47%), Positives = 63/95 (66%), Gaps = 2/95 (2%)
Query: 220 YNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVW 279
++G V++ +++R+ G R K+AV S+D +IDPVG CVG RGSRVQ VV EL E IDIV +
Sbjct: 1 FDGTVEIISIAREAGERTKIAVKSNDPNIDPVGTCVGPRGSRVQNVVNELGGENIDIVQY 60
Query: 280 SPDSATFVINALRPAIVTKVVL--DEDVGRIEVIV 312
D + ++ NAL PA V V ++D + VIV
Sbjct: 61 EEDPSDYIANALNPAEVIAVQFEDEDDERKAFVIV 95
>gi|12240026|gb|AAG49545.1|AF261103_1 NusA protein [Myxococcus xanthus DK 1622]
Length = 254
Score = 99.7 bits (247), Expect = 1e-18, Method: Composition-based stats.
Identities = 65/197 (32%), Positives = 95/197 (48%), Gaps = 19/197 (9%)
Query: 282 DSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
D A FV +AL PA V++V++DE +E+IVP +QLSLAIGRRGQNVRLA+QLTGW +DI
Sbjct: 1 DPARFVCSALAPAEVSRVIIDEANHAMELIVPDDQLSLAIGRRGQNVRLAAQLTGWKLDI 60
Query: 342 ITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF 401
+E R+ V+E++ L A GF ++A +A + G
Sbjct: 61 NSESRVRELREFANRSLGSLP----GVNEMLVETLYAHGFRQARDIAEANAELLAQLPGI 116
Query: 402 DEETAVEIQGRAR-------------EYLEGIDITLQKKI--RELGVSEELCSIPGIDSK 446
D +Q AR +Y + + EL E + + G+ K
Sbjct: 117 DPARIPSMQEAARTRMVEDQAELSRMDYEREQARIAEARRHPDELSQPERMARVRGVGEK 176
Query: 447 IKVALGENGIKTMEDLA 463
L G +++ED+A
Sbjct: 177 TIEQLILAGYRSVEDIA 193
>gi|153812997|ref|ZP_01965665.1| hypothetical protein RUMOBE_03404 [Ruminococcus obeum ATCC 29174]
gi|149830944|gb|EDM86034.1| hypothetical protein RUMOBE_03404 [Ruminococcus obeum ATCC 29174]
Length = 139
Score = 97.4 bits (241), Expect = 5e-18, Method: Composition-based stats.
Identities = 47/93 (50%), Positives = 61/93 (65%)
Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316
M G+RV ++V ELR EKIDI+ W + A + NAL PA V V+ D D V+VP Q
Sbjct: 1 MNGARVNSIVEELRGEKIDIINWDENPAILIENALSPAKVIAVMADPDEKTALVVVPDYQ 60
Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349
LSLAIG+ GQN RLA++LTG+ IDI +E +
Sbjct: 61 LSLAIGKEGQNARLAARLTGFKIDIKSETQARE 93
>gi|254669624|emb|CBA03668.1| N utilization substance protein A [Neisseria meningitidis
alpha153]
Length = 136
Score = 95.8 bits (237), Expect = 1e-17, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66
E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR
Sbjct: 9 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 68
Query: 67 EVVEEVE 73
+V + +
Sbjct: 69 LIVADED 75
>gi|215428280|ref|ZP_03426199.1| transcription elongation factor NusA [Mycobacterium tuberculosis
T92]
gi|289751502|ref|ZP_06510880.1| N utilization substance protein A nusA [Mycobacterium tuberculosis
T92]
gi|289692089|gb|EFD59518.1| N utilization substance protein A nusA [Mycobacterium tuberculosis
T92]
Length = 166
Score = 89.7 bits (221), Expect = 1e-15, Method: Composition-based stats.
Identities = 46/179 (25%), Positives = 84/179 (46%), Gaps = 30/179 (16%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69
+ A+ ++ I + +L + ++ A R G +D R+EI+ +TG + +
Sbjct: 5 MAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRV------- 57
Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129
+AR+ D + ++ D P FGR+A +A+QV++Q+ R+AE +R
Sbjct: 58 -------------IARETDEAGNLISEWDD--TPEGFGRIAATTARQVMLQRFRDAENER 102
Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGD 180
Y EF + GEI++G ++R N V+V +G S+GVI E + +
Sbjct: 103 TYGEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPPPEPVPGRAMNMAT 161
>gi|59041351|gb|AAW83814.1| putative transcription elongation factor [Legionella pneumophila]
Length = 99
Score = 87.0 bits (214), Expect = 8e-15, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 20/118 (16%)
Query: 395 IASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGEN 454
+ +IE FDEE E++ +A + L + ++ K + + L ++ G+ + L
Sbjct: 1 LPAIEEFDEEIVEELRNKANDKLLEMALSSGKGLSG-TPDDSLINMEGMTEDLANKLASK 59
Query: 455 GIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512
GI TMEDLA SVD+L+ G +++ ++I+ AR W
Sbjct: 60 GIATMEDLAEQSVDELMEIE-----------------GISEEKAGALIMKAREP--WF 98
>gi|228311785|pdb|2JZB|B Chain B, Solution Structure Of The Complex Between E.Coli Nusa-Ar2
And Rnap-Actd
Length = 74
Score = 86.6 bits (213), Expect = 1e-14, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 18/89 (20%)
Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486
+ + +++L ++ G+D + L G+ T+EDLA +DDL
Sbjct: 3 SLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIE------------ 50
Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ ++I+ AR + W E
Sbjct: 51 -----GLTDEKAGALIMAAR-NICWFGDE 73
>gi|213425432|ref|ZP_03358182.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
Length = 62
Score = 85.8 bits (211), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR+
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRV 61
>gi|159163265|pdb|1WCN|A Chain A, Nmr Structure Of The Carboxyterminal Domains Of
Escherichia Coli Nusa
Length = 70
Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 18/86 (20%)
Query: 430 ELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLS 489
+ +++L ++ G+D + L G+ T+EDLA +DDL
Sbjct: 2 DNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIE--------------- 46
Query: 490 SLGTPKDQVESMIIHARYKMGWIEKE 515
G ++ ++I+ AR + W E
Sbjct: 47 --GLTDEKAGALIMAAR-NICWFGDE 69
>gi|253734580|ref|ZP_04868745.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
TCH130]
gi|253727445|gb|EES96174.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
TCH130]
Length = 73
Score = 78.9 bits (193), Expect = 2e-12, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 38/73 (52%)
Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALG 452
E+ IEG DE T ++ RA+ L I ++ + + +++L ++ G+D + L
Sbjct: 1 KELLEIEGLDEPTVEALRERAKNALATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLA 60
Query: 453 ENGIKTMEDLAGC 465
G+ T+EDLA
Sbjct: 61 ARGVCTLEDLAEQ 73
>gi|218678853|ref|ZP_03526750.1| transcription elongation factor NusA [Rhizobium etli CIAT 894]
Length = 82
Score = 75.4 bits (184), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 47/72 (65%)
Query: 453 ENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512
E+GIKT+ED AGC+ DDL+GW+E K G +KF+G S + + E MI+ AR GWI
Sbjct: 1 EDGIKTIEDFAGCAADDLVGWTERKNGETKKFEGLFSKFDVSRVEAEQMIVQARLSAGWI 60
Query: 513 EKEKVADEEVQD 524
+E +A E ++
Sbjct: 61 TQEDLAKEAEEE 72
>gi|261886075|ref|ZP_06010114.1| transcription elongation factor NusA [Campylobacter fetus subsp.
venerealis str. Azul-94]
Length = 124
Score = 75.0 bits (183), Expect = 3e-11, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68
+ I +++A E ++ + V + + AA+ LYG + ++P T I L++ + V
Sbjct: 4 ISDIIESIANEICLNFEDVKERIIRAFVNAAKRLYGYECEYEASLDPNTKAIHLYQKILV 63
Query: 69 VEEVE---NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAV 111
VE+ + + ISLK A + D +++IG ++ L + GR
Sbjct: 64 VEDSDERLDEEHFISLKKAHELDATLEIGDSLNYELNIDELGRTGA 109
>gi|291532986|emb|CBL06099.1| NusA N-terminal domain [Megamonas hypermegale ART12/1]
Length = 67
Score = 73.1 bits (178), Expect = 9e-11, Method: Composition-based stats.
Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
M + ++ L V EK I +V+ + ++ A + + T S++RV + TG+
Sbjct: 1 MATKDKG-FLDALKEVGQEKGIAPEVLFEAVEAALVSAYKRNFNTASNVRVYLERATGEF 59
Query: 61 SLFRLLE 67
++ +
Sbjct: 60 HVYAQKK 66
>gi|76664821|emb|CAJ17848.1| transcription terminator nusA [Candidatus Phytoplasma solani]
Length = 162
Score = 70.4 bits (171), Expect = 8e-10, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 64/162 (39%), Gaps = 8/162 (4%)
Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVE----- 73
E+ + R V+ + + + + RV++ +I L++ V ++
Sbjct: 1 ERDLPRKEVIEAFGKGLIAGCKKNH-QVKSCRVQMRENKSEILLYKQFIVADKTNIGMIN 59
Query: 74 -NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYL 132
I L A+ P +G ++ + P +F A++ K +++ + +R+ Y
Sbjct: 60 LKELTPIDLSEAQTIKPQAKVGQIIEIKVDPKEFNLYAIKEFKNQFNEELTKRKRENIYH 119
Query: 133 EFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISR 173
FK++ G++IS V ++L ++ + E
Sbjct: 120 FFKEQEGKLISAKVISENERFYNLELEKEITTLLPKKEISDN 161
>gi|23008735|ref|ZP_00050053.1| hypothetical protein Magn03003752 [Magnetospirillum magnetotacticum
MS-1]
Length = 97
Score = 63.5 bits (153), Expect = 8e-08, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 464 GCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE--KEKVADEE 521
GC+ DDL+G++E +G + GFL + + E++I+ AR GWIE E A+
Sbjct: 3 GCANDDLVGYTEGRGPEAVRHAGFLDGFELSRAEAEALIMAARVHAGWIEAPPEPEAESV 62
Query: 522 VQDAS 526
+AS
Sbjct: 63 EGEAS 67
>gi|315302976|ref|ZP_07873696.1| transcription termination factor NusA [Listeria ivanovii FSL
F6-596]
gi|313628656|gb|EFR97069.1| transcription termination factor NusA [Listeria ivanovii FSL
F6-596]
Length = 55
Score = 63.1 bits (152), Expect = 1e-07, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETG 58
ELL + ++K I R+V++ + ++ A + + ++RV++N E G
Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENG 54
>gi|333000299|gb|EGK19882.1| transcription elongation protein nusA domain protein [Shigella
flexneri K-218]
Length = 62
Score = 59.2 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 8/37 (21%), Positives = 20/37 (54%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL 42
E+L + +AV+ EK++ R+ + + ++ A +
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKN 38
>gi|312972558|ref|ZP_07786731.1| transcription elongation nusA domain protein [Escherichia coli
1827-70]
gi|310332500|gb|EFP99713.1| transcription elongation nusA domain protein [Escherichia coli
1827-70]
gi|323173570|gb|EFZ59199.1| transcription elongation protein nusA domain protein [Escherichia
coli LT-68]
Length = 62
Score = 59.2 bits (142), Expect = 2e-06, Method: Composition-based stats.
Identities = 8/37 (21%), Positives = 20/37 (54%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL 42
E+L + +AV+ EK++ R+ + + ++ A +
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKN 38
>gi|294670566|ref|ZP_06735445.1| hypothetical protein NEIELOOT_02288 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291307691|gb|EFE48934.1| hypothetical protein NEIELOOT_02288 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 63
Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY 43
E+LQ+A+A+A EK++D DVV + ++ AA+
Sbjct: 4 EMLQLAEALASEKNVDTDVVFDALEFALSTAAKKKP 39
>gi|20094120|ref|NP_613967.1| transcription elongation factor NusA-like protein [Methanopyrus
kandleri AV19]
gi|19887121|gb|AAM01897.1| Transcription elongation factor NusA [Methanopyrus kandleri AV19]
Length = 142
Score = 56.5 bits (135), Expect = 9e-06, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE--DVGRI 308
+G +G +G V+ V +L + +++V S D F+ NAL PA V V + E +
Sbjct: 45 IGLAIGKKGQNVRRVQEQLGMD-VEVVEHSEDPEKFIRNALFPARVKSVRVTERGNKKVA 103
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQL 334
V VP+ + IG+ G+N++ A L
Sbjct: 104 IVDVPESERGRVIGKGGRNIKKARIL 129
>gi|219558858|ref|ZP_03537934.1| transcription elongation factor NusA [Mycobacterium tuberculosis
T17]
gi|289571029|ref|ZP_06451256.1| N utilization substance protein A [Mycobacterium tuberculosis
T17]
gi|289544783|gb|EFD48431.1| N utilization substance protein A [Mycobacterium tuberculosis
T17]
Length = 78
Score = 53.5 bits (127), Expect = 8e-05, Method: Composition-based stats.
Identities = 12/56 (21%), Positives = 27/56 (48%)
Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65
+ A+ ++ I + +L + ++ A R G +D R+EI+ +TG + +
Sbjct: 5 MAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60
>gi|11499475|ref|NP_070716.1| transcription elongation factor NusA-like protein [Archaeoglobus
fulgidus DSM 4304]
gi|2648654|gb|AAB89363.1| transcription termination-antitermination factor NusA, putative
[Archaeoglobus fulgidus DSM 4304]
Length = 139
Score = 53.5 bits (127), Expect = 8e-05, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI-VTKVVLDEDV 305
+G +G G V+ EL ++I+I+ S D A F+ N +P K++ E
Sbjct: 39 RRGHMGVAIGKGGINVER-ARELIGKRIEIIEHSEDPAEFIANIFKPIKVNVKLMEKEGS 97
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338
V V + + IG+ G+N+ A +L
Sbjct: 98 KIAVVSVSPDLKGIVIGKGGKNINKAKELAKRH 130
>gi|15679067|ref|NP_276184.1| transcription elongation factor NusA-like protein
[Methanothermobacter thermautotrophicus str. Delta H]
gi|2622153|gb|AAB85545.1| transcription termination factor NusA [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 143
Score = 53.1 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 11/121 (9%)
Query: 218 EIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEK-IDI 276
E G + + D R V D +G +G +GS V V L +K +++
Sbjct: 17 ESMTGAMVKDCIVDDENGRVTFLVKKGD-----MGLAIGKKGSTVAKVQKAL--DKGVEV 69
Query: 277 VVWSPDSATFVINALRPAIVTKVVLDED---VGRIEVIVPKEQLSLAIGRRGQNVRLASQ 333
+ S D F+ N + PA V + + + V + +AIGR GQN+ A
Sbjct: 70 IEHSNDPVEFIKNLMAPAKVRSIRILQKENGEKIATVETDPKNKRIAIGRGGQNIERARL 129
Query: 334 L 334
L
Sbjct: 130 L 130
>gi|159163264|pdb|1WCL|A Chain A, Nmr Structure Of The Carboxyterminal Domains Of
Escherichia Coli Nusa
Length = 76
Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 41/73 (56%)
Query: 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415
+ F + +++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+
Sbjct: 3 HAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKN 62
Query: 416 YLEGIDITLQKKI 428
L I ++ +
Sbjct: 63 ALATIAQAQEESL 75
>gi|307256659|ref|ZP_07538438.1| hypothetical protein appser10_6620 [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306864707|gb|EFM96611.1| hypothetical protein appser10_6620 [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
Length = 47
Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 7/35 (20%), Positives = 19/35 (54%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL 42
E+L A+AV+ EK + ++ + + ++ + +
Sbjct: 4 EILLAAEAVSNEKLLPKEAIFEALETALAISTKKK 38
>gi|304315189|ref|YP_003850336.1| transcription termination factor [Methanothermobacter marburgensis
str. Marburg]
gi|302588648|gb|ADL59023.1| transcription termination factor [Methanothermobacter marburgensis
str. Marburg]
Length = 143
Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 11/121 (9%)
Query: 218 EIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEK-IDI 276
E G + + D + V D +G +G +GS V V L +K +++
Sbjct: 17 ESMTGAMVKDCIVDDENGKVTFLVKKGD-----MGLAIGKKGSTVAKVQKAL--DKGVEV 69
Query: 277 VVWSPDSATFVINALRPAIVTKVVLDED---VGRIEVIVPKEQLSLAIGRRGQNVRLASQ 333
+ S D F+ N + PA + + + + V + +AIGR GQN+ A
Sbjct: 70 IEHSSDPVEFIKNLMAPAKIRSIRILQKENGEKIATVETDPKNKRIAIGRGGQNIERARL 129
Query: 334 L 334
L
Sbjct: 130 L 130
>gi|327401229|ref|YP_004342068.1| NusA family KH domain-containing protein [Archaeoglobus veneficus
SNP6]
gi|327316737|gb|AEA47353.1| NusA family KH domain protein [Archaeoglobus veneficus SNP6]
Length = 139
Score = 51.5 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR-IE 309
+GA +G G ++ EL ++I+++ S D A F++N +P V ++++ + +
Sbjct: 43 MGAAIGKGGINIER-ARELMGKRIEVIEHSDDPAEFIVNIFKPIKVKVKLIEKGGKKIAQ 101
Query: 310 VIVPKEQLSLAIGRRGQNVRLASQL 334
V V + LAIG+ G+N+ A +L
Sbjct: 102 VGVDPQYKGLAIGKGGKNINKAKEL 126
>gi|19915104|gb|AAM04679.1| transcription termination factor NusA [Methanosarcina acetivorans
C2A]
Length = 149
Score = 51.5 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 251 VGACVGMRGSRVQAVVTELRDEK-IDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR-- 307
+G +G G + V L +K I++V +S D TF+ NA P V+ V L G+
Sbjct: 52 MGLAIGKNGENINRVKKAL--DKPIELVEYSEDPVTFIKNAFGPVSVSSVNLTTKNGKRL 109
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQL 334
V VP ++ LAIGR G+N+ L
Sbjct: 110 AYVEVPNKEKGLAIGRNGKNIEKVKML 136
>gi|21228370|ref|NP_634292.1| transcription elongation factor NusA-like protein [Methanosarcina
mazei Go1]
gi|20906840|gb|AAM31964.1| NusA protein homolog [Methanosarcina mazei Go1]
Length = 141
Score = 51.1 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR--I 308
+G +G G + V L I++V +S D TF+ NA P V+ V L G+
Sbjct: 44 MGLAIGKNGENINRVKKALDK-PIELVEYSEDPVTFIKNAFGPVSVSSVNLTNKNGKRLA 102
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQL 334
V VP ++ LAIGR G+N+ L
Sbjct: 103 YVEVPNKEKGLAIGRNGKNIEKVKML 128
>gi|161484938|ref|NP_616199.2| transcription elongation factor NusA-like protein [Methanosarcina
acetivorans C2A]
Length = 141
Score = 50.8 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 251 VGACVGMRGSRVQAVVTELRDEK-IDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR-- 307
+G +G G + V L +K I++V +S D TF+ NA P V+ V L G+
Sbjct: 44 MGLAIGKNGENINRVKKAL--DKPIELVEYSEDPVTFIKNAFGPVSVSSVNLTTKNGKRL 101
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQL 334
V VP ++ LAIGR G+N+ L
Sbjct: 102 AYVEVPNKEKGLAIGRNGKNIEKVKML 128
>gi|254172398|ref|ZP_04879073.1| NusA family KH domain protein, archaeal [Thermococcus sp. AM4]
gi|214033327|gb|EEB74154.1| NusA family KH domain protein, archaeal [Thermococcus sp. AM4]
Length = 145
Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP--AIVTKVVLDED---V 305
+G +G +G+ V+ V + E I+++ S + F+ N + V K+ + E
Sbjct: 45 MGLALGKKGANVKRVQNMIGKE-IELIEHSENPEEFLRNIYKSLGVKVKKIHITEKRDGK 103
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338
+ + + AIGR GQN+ L QL
Sbjct: 104 KVALLDISPREKPRAIGRGGQNINLVKQLMERH 136
>gi|116753357|ref|YP_842475.1| NusA family protein [Methanosaeta thermophila PT]
gi|116664808|gb|ABK13835.1| NusA family KH domain protein [Methanosaeta thermophila PT]
Length = 143
Score = 50.4 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 8/119 (6%)
Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281
G + + + R + D +GA +G +GS + V + +I+IV +S
Sbjct: 22 GGMARDCIVDEENDRIIFVIQKGD-----MGAAIGRKGSNINRVKKSIGK-QIEIVEYSD 75
Query: 282 DSATFVINALRPAIVTKVVLDEDVGR--IEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338
D F+ N +PA V +++ + V V + +AIGR G+N+ A L
Sbjct: 76 DVKEFLQNLFQPADVKNIMVVNKNNKRLAYVEVANKDKGIAIGRDGRNILKAKMLAQRH 134
>gi|213581727|ref|ZP_03363553.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
Length = 36
Score = 50.4 bits (119), Expect = 8e-04, Method: Composition-based stats.
Identities = 8/35 (22%), Positives = 20/35 (57%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAAR 40
E+L + +AV+ EK++ R+ + + ++ A +
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATK 36
>gi|88601374|ref|YP_501552.1| NusA family protein [Methanospirillum hungatei JF-1]
gi|88186836|gb|ABD39833.1| NusA family KH domain protein [Methanospirillum hungatei JF-1]
Length = 142
Score = 50.4 bits (119), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED--VGRIEVIV 312
+G +G ++ +I+ V +S D A F+ N PA V +V + V++
Sbjct: 49 IGKKGVNIKKASESFGK-RIEAVEYSDDPAQFIRNCFHPAQVKEVQFSDYHGEQIAHVVI 107
Query: 313 PKEQLSLAIGRRGQNVRLASQL 334
E AIG+ G+N+ L
Sbjct: 108 RDEDRGRAIGKAGKNLNRTKML 129
>gi|288561065|ref|YP_003424551.1| transcription elongation factor NusA-like protein
[Methanobrevibacter ruminantium M1]
gi|288543775|gb|ADC47659.1| transcription elongation factor NusA-like protein
[Methanobrevibacter ruminantium M1]
Length = 134
Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 9/120 (7%)
Query: 218 EIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIV 277
E G + + D S+ V + D +G + G+ V V + ++I+
Sbjct: 8 ESMTGAMVKDCIIDDENSKVTFVVKNGD-----MGLAIAKGGTTVTKVKKAVGR-GVEII 61
Query: 278 VWSPDSATFVINALRPAIVTKVVL---DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQL 334
++ D F+ N L PA + + + + D V +AIG+ G N+ A L
Sbjct: 62 EYNEDPEQFIKNILSPAELKSIKIVTKNNDEKIAFVNTDSSNKRIAIGKGGINIERAKLL 121
>gi|240103979|ref|YP_002960288.1| transcription elongation factor NusA-like protein [Thermococcus
gammatolerans EJ3]
gi|239911533|gb|ACS34424.1| Transcription termination-antitermination factor, NusA-like protein
(nusA) [Thermococcus gammatolerans EJ3]
Length = 145
Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP--AIVTKVVLDED---V 305
+G +G +G+ V+ V + + I+++ S + F+ N + V K+ + E
Sbjct: 45 MGLALGKKGANVKRVQNMIGKD-IELIEHSENPEEFLRNIYKSLGVKVKKIHITEKRDGK 103
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338
+ + + AIGR GQN+ L QL
Sbjct: 104 KVALLDISPREKPRAIGRGGQNINLVKQLMERH 136
>gi|332203718|gb|EGJ17785.1| nusA N-terminal domain protein [Streptococcus pneumoniae GA47368]
Length = 76
Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 10/49 (20%), Positives = 26/49 (53%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPE 56
E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +
Sbjct: 4 EMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEK 52
>gi|282163891|ref|YP_003356276.1| NusA protein homolog [Methanocella paludicola SANAE]
gi|282156205|dbj|BAI61293.1| NusA protein homolog [Methanocella paludicola SANAE]
Length = 147
Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295
R V S D +G +G G+ + V ++ ++++ ++ D F+ N +PA
Sbjct: 37 RIVFVVKSGD-----MGLAIGKNGNNINRVKKQIGR-HVEVIEYNEDPKEFIKNLFQPAT 90
Query: 296 VTKVVLDEDVGR--IEVIVPKEQLSLAIGRRGQNV 328
V +V+ R V V + LAIG+ G+N+
Sbjct: 91 VKNIVISTKGERTLAIVDVATKDKGLAIGKNGRNI 125
>gi|315230009|ref|YP_004070445.1| NusA-like protein [Thermococcus barophilus MP]
gi|315183037|gb|ADT83222.1| NusA-like protein [Thermococcus barophilus MP]
Length = 145
Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP--AIVTKVVLDEDV--- 305
+G +G RG V+ + + L E ID++ S + F+ N + V KV + E
Sbjct: 45 MGLALGKRGMNVRRIQSMLGKE-IDLIEHSENPEEFLRNIYKTMGVRVKKVHITEKKNGK 103
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338
+ V + AIGR G N+ L +L
Sbjct: 104 KVALLDVNQRDKPRAIGRGGHNINLVKELMERH 136
>gi|305663639|ref|YP_003859927.1| NusA family KH domain protein [Ignisphaera aggregans DSM 17230]
gi|304378208|gb|ADM28047.1| NusA family KH domain protein [Ignisphaera aggregans DSM 17230]
Length = 146
Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE--DV 305
D +G +G +G V+ + + + ++IV W + FV N PA V ++ L E D
Sbjct: 46 SDKLGQAIGRKGINVKYLSKLIGKD-VEIVGWGNNLEDFVKNIFMPARVQRIQLVEGRDK 104
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
+ V V +AIG+ G+NV A L
Sbjct: 105 KIVYVYVDPRDKGIAIGKNGRNVAKARLLLNRYF 138
>gi|312136872|ref|YP_004004209.1| nusa family kh domain protein [Methanothermus fervidus DSM 2088]
gi|311224591|gb|ADP77447.1| NusA family KH domain protein [Methanothermus fervidus DSM 2088]
Length = 143
Score = 49.2 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
Query: 251 VGACVGMRGSRVQAVVTELRDEK-IDIVVWSPDSATFVINALRPAIVTKVVLDED---VG 306
+G +G RGS + V L +K ++++ S D F+ N L PA + + + +
Sbjct: 45 MGLAIGRRGSTIAKVRKTL--DKGVEVLEHSDDPVEFISNILSPAKLKSIRILQKENGEK 102
Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338
V + IG+ GQN++ A L
Sbjct: 103 IATVKADARNKRIIIGKGGQNIKRAKILAKRH 134
>gi|57641014|ref|YP_183492.1| transcription elongation factor NusA-like protein [Thermococcus
kodakarensis KOD1]
gi|57159338|dbj|BAD85268.1| transcription termination-antitermination factor, NusA homolog
[Thermococcus kodakarensis KOD1]
Length = 145
Score = 49.2 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP--AIVTKVVLDED---V 305
+G +G +G+ V+ V L E I+++ S + F+ N + V KV + E
Sbjct: 45 MGLALGKKGANVKRVQGMLGKE-IELIEHSENPEEFLRNIYKSLGVKVKKVHITEKRDGK 103
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338
+ V AIGR GQN+ L +L
Sbjct: 104 KVALLDVGPRDKPRAIGRGGQNINLVKELMERH 136
>gi|212223367|ref|YP_002306603.1| transcription elongation factor NusA-like protein [Thermococcus
onnurineus NA1]
gi|212008324|gb|ACJ15706.1| transcription termination-antitermination factor [Thermococcus
onnurineus NA1]
Length = 145
Score = 49.2 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP--AIVTKVVLDED---V 305
+G +G +G+ V+ V L E I+++ S + F+ N + V KV + E
Sbjct: 45 MGLALGKKGANVKRVQNMLGKE-IELIEHSENPEEFLRNIYKSLGVKVKKVHITEKRDGK 103
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343
+ + + AIGR GQN+ L +L I
Sbjct: 104 KVALLDIGPREKPRAIGRGGQNINLVKELMERHHGIHD 141
>gi|289825802|ref|ZP_06544970.1| transcription elongation factor NusA [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
Length = 39
Score = 49.2 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 8/37 (21%), Positives = 20/37 (54%)
Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL 42
E+L + +AV+ EK++ R+ + + ++ A +
Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKEK 38
>gi|52696033|pdb|1U9L|A Chain A, Structural Basis For A Nusa- Protein N Interaction
gi|52696034|pdb|1U9L|B Chain B, Structural Basis For A Nusa- Protein N Interaction
Length = 70
Score = 49.2 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 38/69 (55%)
Query: 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415
+ F + +++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+
Sbjct: 2 HAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKN 61
Query: 416 YLEGIDITL 424
L I
Sbjct: 62 ALATIAQAQ 70
>gi|288931143|ref|YP_003435203.1| NusA family KH domain protein [Ferroglobus placidus DSM 10642]
gi|288893391|gb|ADC64928.1| NusA family KH domain protein [Ferroglobus placidus DSM 10642]
Length = 139
Score = 49.2 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR-IE 309
+G +G G V+ E+ +KI+IV S D F+ N +P V ++++ +
Sbjct: 43 MGLAIGKGGINVEK-AKEIIGKKIEIVEHSEDPEEFIKNIFKPINVRVKIINKGGKKVAH 101
Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWT 338
V P + IG+ G+N+ A +L
Sbjct: 102 VYAPLQYKGFVIGKGGKNINKAKELVRRH 130
>gi|73671117|ref|YP_307132.1| transcription elongation factor NusA-like protein [Methanosarcina
barkeri str. Fusaro]
gi|72398279|gb|AAZ72552.1| transcription termination factor NusA [Methanosarcina barkeri str.
Fusaro]
Length = 141
Score = 48.8 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR--I 308
+G +G G + V L I++V +S + TF+ NA P V+ V + G+
Sbjct: 44 MGLAIGRNGENINRVKKALDK-PIELVEYSDEPVTFLKNAFGPVSVSSVNIINKNGKRLA 102
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQL 334
V VP ++ LAIGR G+N+ L
Sbjct: 103 YVEVPNKEKGLAIGRNGKNIEKVKML 128
>gi|242398383|ref|YP_002993807.1| NusA like protein [Thermococcus sibiricus MM 739]
gi|242264776|gb|ACS89458.1| NusA like protein [Thermococcus sibiricus MM 739]
Length = 145
Score = 48.5 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP--AIVTKVVLDEDV--- 305
+G +G RGS V+ V + + + I+++ S + F+ N + V KV + E
Sbjct: 45 MGLALGKRGSNVKRVQSMIGKD-IELIEHSENPEEFIKNIYKTMGVRVKKVHITEKKNGK 103
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338
+ V + AIG+ GQN+ L +L
Sbjct: 104 KVALLDVNQRDKPRAIGKGGQNINLVKELMERH 136
>gi|322369997|ref|ZP_08044559.1| transcription elongation factor NusA-like protein [Haladaptatus
paucihalophilus DX253]
gi|320550333|gb|EFW91985.1| transcription elongation factor NusA-like protein [Haladaptatus
paucihalophilus DX253]
Length = 142
Score = 48.5 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 11/132 (8%)
Query: 211 LFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELR 270
LF E V + G K +F +G +G G V++V +L
Sbjct: 15 LFEDETGATARDCVVL-------GDDDKRVIFVVKPG--EMGQAIGPGGKHVRSVEEQLG 65
Query: 271 DEKIDIVVWSPDSATFVINALRPAIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVR 329
+ +++V + + FV+NAL PA V V + E D V ++ +AIG G+N+
Sbjct: 66 AD-VELVEDADEPDRFVVNALAPAEVRHVTISENDDTVAYAEVAQQDTGVAIGTDGRNIE 124
Query: 330 LASQLTGWTIDI 341
A L D+
Sbjct: 125 AAKLLVSRHFDV 136
>gi|14520834|ref|NP_126309.1| transcription elongation factor NusA-like protein [Pyrococcus
abyssi GE5]
gi|5458050|emb|CAB49540.1| nusA transcription termination-antitermination factor nusA,
putative [Pyrococcus abyssi GE5]
Length = 145
Score = 48.1 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 6/93 (6%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP--AIVTKVVLDED---V 305
+G +G RG V+ V L E ID+V S + F+ N + V +V + E
Sbjct: 45 MGLALGKRGINVRRVENLLGKE-IDLVEHSENPEEFIKNIYKTMGVKVKRVHITEKKDGK 103
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338
+ V AIGR G N+ + QL
Sbjct: 104 KVALLDVNPRDKPKAIGRGGHNINIVRQLMERH 136
>gi|154151469|ref|YP_001405087.1| NusA family protein [Candidatus Methanoregula boonei 6A8]
gi|154000021|gb|ABS56444.1| NusA family KH domain protein [Methanoregula boonei 6A8]
Length = 154
Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDVGRI 308
+G +G +G+ ++ +E +KI++V ++ +S F+ N PA VT +V + D
Sbjct: 46 MGLAIGKKGASIKK-ASEAMGKKIEVVEYNSNSEQFLKNCFLPAQVTSIVFSGEPDAQSA 104
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQL 334
V V E +AIG+ G+N+ A +L
Sbjct: 105 TVEVRDEDRGIAIGKDGKNIFKAKKL 130
>gi|237757008|ref|ZP_04585463.1| putative N utilization substance protein A [Sulfurihydrogenibium
yellowstonense SS-5]
gi|237690826|gb|EEP59979.1| putative N utilization substance protein A [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 75
Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 13/71 (18%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG--TMSDIRVEINPETGDISLFRLL 66
L + + ++ E++I DV+ + D I A + + +++ + E ++ +
Sbjct: 5 LKNVIETISRERNIPEDVIEKALKDGILTAVKKEFKLREKGAVKIIFDKEKDELKVLIKK 64
Query: 67 EVVEEVENYTC 77
+V VE+ T
Sbjct: 65 KVTPFVEDETK 75
>gi|88602084|ref|YP_502262.1| NusA family protein [Methanospirillum hungatei JF-1]
gi|88187546|gb|ABD40543.1| NusA family KH domain protein [Methanospirillum hungatei JF-1]
Length = 147
Score = 47.7 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPK 314
+G +G ++ + + K+++V ++ D F+ N +PA V + D+ ++ + V
Sbjct: 49 IGKKGDNIRRL-QGVTGRKVEMVEYAEDLQEFLSNIFKPAQVIRFACDDQTKKMNIYVSD 107
Query: 315 -EQLSLAIGRRGQNVRLASQLT 335
+ +AIG+ G + A L
Sbjct: 108 KNDVGIAIGKGGCTIEKARILI 129
>gi|14591325|ref|NP_143403.1| transcription elongation factor NusA-like protein [Pyrococcus
horikoshii OT3]
gi|3257970|dbj|BAA30653.1| 145aa long hypothetical transcription termination-antitermination
factor nusA [Pyrococcus horikoshii OT3]
Length = 145
Score = 47.7 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP--AIVTKVVLDED---V 305
+G +G RG V+ V + L E ID++ S + F+ N R V +V + E
Sbjct: 45 MGLALGKRGINVRRVESLLGKE-IDLIEHSENPEEFIKNIYRTMGVKVKRVHITEKKDGK 103
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338
+ V AIGR G N+ + QL
Sbjct: 104 KVALLDVNPRDKPRAIGRGGHNINIVRQLMERH 136
>gi|330507368|ref|YP_004383796.1| NusA protein-like protein [Methanosaeta concilii GP-6]
gi|328928176|gb|AEB67978.1| NusA protein-like protein [Methanosaeta concilii GP-6]
Length = 143
Score = 47.7 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 8/119 (6%)
Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281
G + V + R + D +GA +G +GS + V + +I+IV +S
Sbjct: 22 GGMARDCVVDEENERIIFVIKKGD-----MGAAIGRKGSNINRVKKSVGK-QIEIVEYSE 75
Query: 282 DSATFVINALRPAIVTKVVL--DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338
D F+ N +PA + V++ V V + +AIGR G+N+ A L
Sbjct: 76 DVKEFLENLFQPAAIKNVMVVNKNSKRLAYVEVANKDKGIAIGRDGRNILKAKMLAQRH 134
>gi|332157771|ref|YP_004423050.1| transcription elongation factor NusA-like protein [Pyrococcus sp.
NA2]
gi|331033234|gb|AEC51046.1| transcription elongation factor NusA-like protein [Pyrococcus sp.
NA2]
Length = 145
Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 6/93 (6%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP--AIVTKVVLDED---V 305
+G +G RG V+ V + E ID+V S + F+ N + V +V + E
Sbjct: 45 MGLALGKRGINVRRVENLIGKE-IDLVEHSDNPEEFIKNIYKTMGVKVKRVHITEKKDGK 103
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338
+ V AIGR G N+ + QL
Sbjct: 104 KVALLDVNPRDKPRAIGRGGHNINIVKQLMERH 136
>gi|141393|sp|P29157|NUSA_THECE RecName: Full=NusA protein homolog
gi|48144|emb|CAA47726.1| ORF-X [Thermococcus celer]
gi|58411|emb|CAA42848.1| unnamed protein product [Thermococcus celer]
Length = 145
Score = 47.3 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP--AIVTKVVLDED---V 305
+G +G +G+ V+ V + E I+++ S + F+ N + V +V + E
Sbjct: 45 MGLALGKKGANVKRVQNMIGKE-IEVIEHSENPEEFLRNIYKSLGVKVKRVHITEKRDGK 103
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338
+ + + AIGR GQN+ L +L
Sbjct: 104 RVALLDIGPREKPRAIGRGGQNINLVKELMERH 136
>gi|296121473|ref|YP_003629251.1| type I site-specific deoxyribonuclease, HsdR family [Planctomyces
limnophilus DSM 3776]
gi|296013813|gb|ADG67052.1| type I site-specific deoxyribonuclease, HsdR family [Planctomyces
limnophilus DSM 3776]
Length = 1065
Score = 47.3 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 41/226 (18%), Positives = 78/226 (34%), Gaps = 30/226 (13%)
Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67
E + A A + + + V+ +S KAA + + VE E
Sbjct: 730 EAIAEARAFCDSRGVSLERVIDANPESFHKAA--ELAQAAHLLVE-------------AE 774
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPL----PPMDFGRVAVQSAKQVIIQKVR 123
VVE V++ +I L + + VV P A+++ V+ +K+R
Sbjct: 775 VVEAVDDAVEKIILNDDLKKQFLFHVAQVVKLYKAILPDPRANEFAAIKTCLVVLAEKIR 834
Query: 124 EAERDRQYLEFKDKVGEI------ISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR 177
+ D+VGE+ G V ++DL D +
Sbjct: 835 NLTDKANIDDLLDQVGELLDESISTVGYVIHATEETSLIDLSEVDFEALKAHFSKGRKHT 894
Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGI 223
+++K+ + ++ R Q+ SR ++ F + E G+
Sbjct: 895 EAEKLKALV--SQKLTRMVQLNKSRIE---LLDKFKTLIEEYNKGM 935
>gi|298674724|ref|YP_003726474.1| NusA family KH domain-containing protein [Methanohalobium
evestigatum Z-7303]
gi|298287712|gb|ADI73678.1| NusA family KH domain protein [Methanohalobium evestigatum Z-7303]
Length = 141
Score = 46.9 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDVGRI 308
+GA +G G + V + +++V +S D + F+ NA P V+ V L +D
Sbjct: 44 MGAAIGKNGEHINKVKENVDK-HVELVEYSEDPSEFIKNAFGPVAVSSVNLVNKDDKQYA 102
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338
V V LAIG G+N+ +
Sbjct: 103 YVQVSNNSKGLAIGSNGKNIDKVKMIANRH 132
>gi|307353872|ref|YP_003894923.1| NusA family KH domain-containing protein [Methanoplanus
petrolearius DSM 11571]
gi|307157105|gb|ADN36485.1| NusA family KH domain protein [Methanoplanus petrolearius DSM
11571]
Length = 156
Score = 46.9 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG---RIEVI 311
+G G ++ EL KI++V +S D F+ N PA V V + E+ V
Sbjct: 50 IGKSGVSIKKASDELGK-KIEVVEFSNDPVQFIKNCFLPARVISVDIRENAEGEFEAFVD 108
Query: 312 VPKEQLSLAIGRRGQNVRLASQL 334
V +E + +AIG+ G+N+ A++L
Sbjct: 109 VEEEDMGIAIGKGGKNIFKANKL 131
>gi|147921531|ref|YP_684653.1| transcription termination factor NusA [uncultured methanogenic
archaeon RC-I]
gi|110620049|emb|CAJ35327.1| transcription termination factor NusA [uncultured methanogenic
archaeon RC-I]
Length = 146
Score = 46.9 bits (110), Expect = 0.009, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD--EDVGRI 308
+G +G G+ + V ++ I+++ +S D F+ N +PA V V + D
Sbjct: 46 MGLAIGKNGNNINRVKKQIGR-LIEVIEYSEDPKEFIRNLFQPAAVKNVTISTRGDRSIA 104
Query: 309 EVIVPKEQLSLAIGRRGQNV 328
V + + LAIG+ G+N+
Sbjct: 105 IVDIATKDKGLAIGKNGRNI 124
>gi|15621245|dbj|BAB65240.1| 130aa long conserved hypothetical protein [Sulfolobus tokodaii str.
7]
Length = 130
Score = 46.9 bits (110), Expect = 0.009, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV--GRI 308
+G +G GS V+ + L + I+IV +S + V N + PA V V + + +
Sbjct: 33 MGTAIGKNGSNVKRLEK-LIGKSIEIVGYSDNLEDLVRNLMAPAKVRSVKVVQSNSKKTV 91
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
+ V + LAIG+ G+NV A + +DI
Sbjct: 92 YINVDPQDKGLAIGKNGRNVTRAKLILKRYMDI 124
>gi|170591398|ref|XP_001900457.1| KH domain containing protein [Brugia malayi]
gi|158592069|gb|EDP30671.1| KH domain containing protein [Brugia malayi]
Length = 634
Score = 46.9 bits (110), Expect = 0.009, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 64/163 (39%), Gaps = 12/163 (7%)
Query: 284 ATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343
A +V N + A+ + V + + VP + IG +G ++R A +LTG + I
Sbjct: 355 AQYVRNTVGTAVAITGQ--QQVRTVHMWVPNNMVGALIGAKGAHIRSAIRLTGAQLRIEG 412
Query: 344 EEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403
+ ++ + + V E++ LV A +++E+ E +
Sbjct: 413 GGTNKDKKESRGEGNNEKSDKDNAVTELVKKELVE---------ADERVNELDKNENNSD 463
Query: 404 ETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSK 446
E + E + ++ K +++ E L +I G D +
Sbjct: 464 EKQNGKKEENVEKVASPKLSKDKD-KDVHAEERLVTITGNDPQ 505
>gi|325960112|ref|YP_004291578.1| NusA family KH domain-containing protein [Methanobacterium sp.
AL-21]
gi|325331544|gb|ADZ10606.1| NusA family KH domain protein [Methanobacterium sp. AL-21]
Length = 143
Score = 46.5 bits (109), Expect = 0.012, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 9/120 (7%)
Query: 218 EIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIV 277
E G + + + + V D +G +G RGS V V + ++++
Sbjct: 17 ESMTGAMVKDLLVDEENGKLTFLVKKGD-----MGLAIGKRGSTVTKVQKTVDK-GVEVI 70
Query: 278 VWSPDSATFVINALRPAIVTKVVLDEDV---GRIEVIVPKEQLSLAIGRRGQNVRLASQL 334
S D F+ N + PA + + + + + AIG+ GQN+ A L
Sbjct: 71 EHSDDPVEFITNLMAPAKLRSIRILQKENGEKIATIEADSRNKRTAIGKAGQNIERARLL 130
>gi|161751102|ref|NP_376131.2| transcription elongation factor NusA-like protein [Sulfolobus
tokodaii str. 7]
Length = 143
Score = 46.1 bits (108), Expect = 0.014, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV--GRI 308
+G +G GS V+ + L + I+IV +S + V N + PA V V + + +
Sbjct: 46 MGTAIGKNGSNVKRLEK-LIGKSIEIVGYSDNLEDLVRNLMAPAKVRSVKVVQSNSKKTV 104
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
+ V + LAIG+ G+NV A + +DI
Sbjct: 105 YINVDPQDKGLAIGKNGRNVTRAKLILKRYMDI 137
>gi|207109128|ref|ZP_03243290.1| transcription elongation factor NusA [Helicobacter pylori
HPKX_438_CA4C1]
Length = 129
Score = 46.1 bits (108), Expect = 0.015, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 22/116 (18%)
Query: 267 TELRDEKIDIVVWSPDSATFVINALRPAIVTK----------------------VVLDED 304
EL E ID + +S ++ AL PA + +++
Sbjct: 1 NELNKENIDCIEYSNVPEIYITLALAPAKILSVEIKKIPIEELNAEEKESIQERFIVNNH 60
Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
+ + +V + + S AIG+ G NV LAS LTG+ I+ T N + + + TQ
Sbjct: 61 LQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHIEFETIPSVKENAENESEKETQ 116
>gi|126178254|ref|YP_001046219.1| NusA family protein [Methanoculleus marisnigri JR1]
gi|126178267|ref|YP_001046232.1| NusA family protein [Methanoculleus marisnigri JR1]
gi|125861048|gb|ABN56237.1| NusA family KH domain protein [Methanoculleus marisnigri JR1]
gi|125861061|gb|ABN56250.1| NusA family KH domain protein [Methanoculleus marisnigri JR1]
Length = 149
Score = 46.1 bits (108), Expect = 0.015, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD---EDVGR 307
+G +G GS ++ +++ ++I++V +S D + F+ N PA VT + D ED
Sbjct: 46 MGLAIGKSGSSIKK-ASDVMGKRIEVVEYSADPSQFLRNCFLPAQVTGIDFDTDEEDQQI 104
Query: 308 IEVIVPKEQLSLAIGRRGQNV 328
+ V E LAIG+ G+N+
Sbjct: 105 ALIDVRDEDRGLAIGKAGKNI 125
>gi|159040907|ref|YP_001540159.1| transcription elongation factor NusA-like protein [Caldivirga
maquilingensis IC-167]
gi|157919742|gb|ABW01169.1| NusA family KH domain protein [Caldivirga maquilingensis IC-167]
Length = 148
Score = 45.8 bits (107), Expect = 0.017, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD-- 302
D + P+ VG G V+ + L + ++IV + D + NAL PA V + ++
Sbjct: 46 DKNFAPLA--VGKGGINVKKLKNLLGKD-VEIVEYGDDPEELLRNALYPAKVVNITINKL 102
Query: 303 -EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
+ + V + + +A+G+ +N++ A+ L DI
Sbjct: 103 PNNGKVAIIRVEEGEKGIALGKYHRNLKRAALLAKRYFDI 142
>gi|219852753|ref|YP_002467185.1| NusA family KH domain protein [Methanosphaerula palustris E1-9c]
gi|219547012|gb|ACL17462.1| NusA family KH domain protein [Methanosphaerula palustris E1-9c]
Length = 148
Score = 45.4 bits (106), Expect = 0.025, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG--RI 308
+G +G +G+ ++ +++ ++I++V +S D F+ N PA V V +E
Sbjct: 46 MGLAIGKKGASIKK-ASDVMGKRIEVVEYSDDPEQFIKNCFLPAQVVSVEFEESEEGPVA 104
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338
V V +E +AIG+ G+N+ A +L+
Sbjct: 105 HVEVREEDRGIAIGKEGKNIFKAKRLSQRQ 134
>gi|312075410|ref|XP_003140404.1| KH domain-containing protein [Loa loa]
gi|307764432|gb|EFO23666.1| KH domain-containing protein [Loa loa]
Length = 642
Score = 45.0 bits (105), Expect = 0.031, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 58/164 (35%), Gaps = 13/164 (7%)
Query: 283 SATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342
A +V N + T + V + + VP + IG +G ++R A +LTG + I
Sbjct: 343 PAHYVRNTVG--TTTTAASQQQVRTVHMWVPNNMVGALIGAKGAHIRSAIRLTGAQLRIE 400
Query: 343 TEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD 402
+ ++ +E E + A +++E E
Sbjct: 401 GGGMNKDKKENRGE----------GNNEKSDKENSTESVKEETVAANERVNEPGKDENNS 450
Query: 403 EETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSK 446
+E +E + E + K +++ E L +I G D +
Sbjct: 451 DEKQIEKKEENVEKTTSPKLAKDKD-KDVHAEERLVTIIGNDPQ 493
>gi|303244441|ref|ZP_07330776.1| NusA family KH domain protein [Methanothermococcus okinawensis IH1]
gi|302485139|gb|EFL48068.1| NusA family KH domain protein [Methanothermococcus okinawensis IH1]
Length = 188
Score = 44.6 bits (104), Expect = 0.037, Method: Composition-based stats.
Identities = 33/149 (22%), Positives = 60/149 (40%), Gaps = 5/149 (3%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE--DVGRI 308
+GA +G G V+ + + KID++ +S D FV N P + V + + D +
Sbjct: 43 IGAAIGKGGENVKNAMEKFGK-KIDVIEYSSDLKKFVRNVFAPLKLEDVWIKKFGDDVVV 101
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368
+ V + IG RG+N+ A + G DI + S R+ + + F +
Sbjct: 102 YIRVHPKLRRTIIGNRGKNIDRAVNIVGRLSDIKNIKVVSEPRKNPKGKYHKKFEKT--E 159
Query: 369 DEIIAHLLVAEGFADVEELACVKISEIAS 397
+ + + E+L +SE
Sbjct: 160 KPKTENKVAENKNIEAEKLKEEVVSESNE 188
>gi|307595334|ref|YP_003901651.1| NusA family KH domain-containing protein [Vulcanisaeta distributa
DSM 14429]
gi|307550535|gb|ADN50600.1| NusA family KH domain protein [Vulcanisaeta distributa DSM 14429]
Length = 150
Score = 44.6 bits (104), Expect = 0.042, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 6/100 (6%)
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--- 301
D + P+ VG G ++ + EL + +++V + + N+L PA V V +
Sbjct: 42 DKNFAPLA--VGKNGINIRKL-KELTGKDVEVVEYGETPEELIKNSLYPARVISVKITKL 98
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
+ V E ++AIG++G+N+ A L DI
Sbjct: 99 PNNGSIAIATVHNEDKAIAIGKQGRNINRAKLLAKRYFDI 138
>gi|229579770|ref|YP_002838169.1| KH type 2 domain protein [Sulfolobus islandicus Y.G.57.14]
gi|229581561|ref|YP_002839960.1| NusA family KH domain protein [Sulfolobus islandicus Y.N.15.51]
gi|238620367|ref|YP_002915193.1| KH type 2 domain protein [Sulfolobus islandicus M.16.4]
gi|284998391|ref|YP_003420159.1| KH, type 2 domain protein [Sulfolobus islandicus L.D.8.5]
gi|228010485|gb|ACP46247.1| KH type 2 domain protein [Sulfolobus islandicus Y.G.57.14]
gi|228012277|gb|ACP48038.1| NusA family KH domain protein [Sulfolobus islandicus Y.N.15.51]
gi|238381437|gb|ACR42525.1| KH type 2 domain protein [Sulfolobus islandicus M.16.4]
gi|284446287|gb|ADB87789.1| KH, type 2 domain protein [Sulfolobus islandicus L.D.8.5]
Length = 98
Score = 44.6 bits (104), Expect = 0.046, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE--DVGRI 308
+G +G G V+ + + + I++V +S + V N + PA V V + +
Sbjct: 1 MGVAIGKSGINVKKLRKIIGKD-IELVAYSDNLEELVKNLMSPARVRSVKVVNTSSKKSV 59
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
+ + + LAIG+ G+NV A + +DI
Sbjct: 60 YISIDPQDKGLAIGKNGRNVARAKLILKRYMDI 92
>gi|323475230|gb|ADX85836.1| KH type 2 domain protein [Sulfolobus islandicus REY15A]
gi|323477962|gb|ADX83200.1| KH type 2 domain protein [Sulfolobus islandicus HVE10/4]
Length = 98
Score = 44.2 bits (103), Expect = 0.047, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE--DVGRI 308
+G +G G V+ + + + I++V +S + V N + PA V V + +
Sbjct: 1 MGVAIGKSGINVKKLRKIIGKD-IELVAYSDNLEELVKNLMSPARVRSVKVVNTSSKKSV 59
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
+ + + LAIG+ G+NV A + +DI
Sbjct: 60 YINIDPQDKGLAIGKNGRNVARAKLILKRYMDI 92
>gi|297619372|ref|YP_003707477.1| DNA repair and recombination protein RadA [Methanococcus voltae A3]
gi|297378349|gb|ADI36504.1| DNA repair and recombination protein RadA [Methanococcus voltae A3]
Length = 322
Score = 44.2 bits (103), Expect = 0.047, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 17/74 (22%)
Query: 433 VSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLG 492
+S+ L +PG+ L E G +A +V +L G
Sbjct: 1 MSDNLTDLPGVGPSTAEKLAEGGYIDFMKIATATVGELTDIE-----------------G 43
Query: 493 TPKDQVESMIIHAR 506
+ MI+ AR
Sbjct: 44 ISEKAAAKMIMGAR 57
>gi|156937041|ref|YP_001434837.1| NusA family protein [Ignicoccus hospitalis KIN4/I]
gi|156566025|gb|ABU81430.1| NusA family KH domain protein [Ignicoccus hospitalis KIN4/I]
Length = 143
Score = 44.2 bits (103), Expect = 0.048, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD--EDVGRI 308
VG +G RG V+ + E+ ++I+IV +S + V NAL PA V V + +
Sbjct: 46 VGRAIGKRGFMVRKL-KEILKKQIEIVPYSDNIEEMVKNALAPARVIGVRVSKTPKGKVV 104
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
V + +AIG+ G+NV A + D+
Sbjct: 105 YARVNPKDKGVAIGKEGRNVAKARLILKRHFDV 137
>gi|76800714|ref|YP_325722.1| transcription elongation factor NusA-like protein [Natronomonas
pharaonis DSM 2160]
gi|76556579|emb|CAI48150.1| transcription elongation factor nusA [Natronomonas pharaonis DSM
2160]
Length = 141
Score = 44.2 bits (103), Expect = 0.051, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE-DVGRIEVIVP 313
+G G V V +++ + + ++ + +A FV NAL PA V V + E D V
Sbjct: 49 IGPGGDHVATVESKVGRD-VTVIEGAETAADFVANALAPAAVYNVTISENDTTVAYAEVD 107
Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDI 341
+ +AIG G+N+ LA +L DI
Sbjct: 108 ENDRGVAIGADGRNIDLARRLADRHFDI 135
>gi|196230414|ref|ZP_03129276.1| amino acid adenylation domain protein [Chthoniobacter flavus
Ellin428]
gi|196225344|gb|EDY19852.1| amino acid adenylation domain protein [Chthoniobacter flavus
Ellin428]
Length = 619
Score = 44.2 bits (103), Expect = 0.052, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 29 SVMADSIQKAAR----SLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVA 84
M +++KAAR L G D I+P + ++ L VVE VEN +I ++A
Sbjct: 148 EAMLAALRKAARGATGELVGAARDSGAGIDPTSDEVKLSAKFRVVETVENEENEIGFELA 207
Query: 85 RDRDPSIDIGGVVSDPLPPMDFGR----VAVQSAKQV 117
I +G + L P +FGR +A ++ K+
Sbjct: 208 TTLKADIQVGEDLELLLSPQEFGRVLGLIAAEAMKRR 244
>gi|254169028|ref|ZP_04875866.1| NusA family KH domain protein, archaeal [Aciduliprofundum boonei
T469]
gi|254169225|ref|ZP_04876059.1| NusA family KH domain protein, archaeal [Aciduliprofundum boonei
T469]
gi|289596762|ref|YP_003483458.1| NusA family KH domain protein [Aciduliprofundum boonei T469]
gi|197621821|gb|EDY34402.1| NusA family KH domain protein, archaeal [Aciduliprofundum boonei
T469]
gi|197621998|gb|EDY34575.1| NusA family KH domain protein, archaeal [Aciduliprofundum boonei
T469]
gi|289534549|gb|ADD08896.1| NusA family KH domain protein [Aciduliprofundum boonei T469]
Length = 141
Score = 44.2 bits (103), Expect = 0.060, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG--RIEVIVPKE 315
GS++Q V ++ + +V +SPD F N V + ++ I V V
Sbjct: 51 NGSKIQTVRNLIKK-NVMVVEYSPDIVVFTKNIFHRFHVKNIKVENVDNQFSITVFVDPR 109
Query: 316 QLSLAIGRRGQNVRLASQLTGWTI 339
+ AIG+ G+N++LA ++
Sbjct: 110 DKARAIGKEGRNLKLAKEIISRHF 133
>gi|325969569|ref|YP_004245761.1| NusA family KH domain protein [Vulcanisaeta moutnovskia 768-28]
gi|323708772|gb|ADY02259.1| NusA family KH domain protein [Vulcanisaeta moutnovskia 768-28]
Length = 150
Score = 43.8 bits (102), Expect = 0.063, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 6/100 (6%)
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--- 301
D + P+ VG G ++ + EL + +++V + + N+L PA V + +
Sbjct: 42 DKNFAPLA--VGKNGINIRKL-KELTGKDVEVVEYGETPEELIKNSLYPARVLSIKITKL 98
Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
+ V E ++AIG++G+N+ A L DI
Sbjct: 99 PNNGSIAIATVHNEDKAIAIGKQGRNINRAKLLAKRYFDI 138
>gi|18977932|ref|NP_579289.1| transcription elongation factor NusA-like protein [Pyrococcus
furiosus DSM 3638]
gi|18893702|gb|AAL81684.1| transcription termination-antitermination factor nusa [Pyrococcus
furiosus DSM 3638]
Length = 145
Score = 43.8 bits (102), Expect = 0.065, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 6/93 (6%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP--AIVTKVVLDED---V 305
+G +G G V+ + + E ID+V S + F+ N R V KV + E
Sbjct: 45 MGLALGRGGINVRRIEGLIGKE-IDLVEHSENPEEFIKNIYRTMGVKVKKVHITEKRDGK 103
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338
+ V AIGR G+N+ + QL
Sbjct: 104 KVALLDVNPRDKPRAIGRGGRNINIVKQLMERH 136
>gi|84490157|ref|YP_448389.1| transcription elongation factor NusA-like protein [Methanosphaera
stadtmanae DSM 3091]
gi|84373476|gb|ABC57746.1| NusA [Methanosphaera stadtmanae DSM 3091]
Length = 143
Score = 43.8 bits (102), Expect = 0.070, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED---VGR 307
+G +G RGS + + ++ I+I+ S D F+ N L A V + +
Sbjct: 45 MGLAIGKRGSTIAKMQNKVDK-SIEIIEHSDDPGEFIKNLLSVAKVNSIEFSTNAKGNKI 103
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
+ V + IG+ GQN+R A Q DI
Sbjct: 104 ATLDVDSKTKRSTIGKNGQNIRRARQFAKRQFDI 137
>gi|303244732|ref|ZP_07331062.1| DNA repair and recombination protein RadA [Methanothermococcus
okinawensis IH1]
gi|302484866|gb|EFL47800.1| DNA repair and recombination protein RadA [Methanothermococcus
okinawensis IH1]
Length = 322
Score = 43.8 bits (102), Expect = 0.072, Method: Composition-based stats.
Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 17/75 (22%)
Query: 433 VSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLG 492
+++ L +PG+ L E G +A ++ +L G
Sbjct: 1 MADNLTDLPGVGPSTAEKLIEAGYIDFMKIATATIGELTDIE-----------------G 43
Query: 493 TPKDQVESMIIHARY 507
+ MI+ AR
Sbjct: 44 ISEKAAAKMIMGARE 58
>gi|119719200|ref|YP_919695.1| NusA family protein [Thermofilum pendens Hrk 5]
gi|119524320|gb|ABL77692.1| NusA family KH domain protein [Thermofilum pendens Hrk 5]
Length = 149
Score = 43.8 bits (102), Expect = 0.073, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
D P+ VG GS+++ + LR + +++V FV + PA V +V + E+
Sbjct: 45 DKGFAPLA--VGKNGSKIRMIKELLRKD-VEVVEDGSSLEDFVKSVFFPARVVEVKVREE 101
Query: 305 VGRIEV--IVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
R V +VP +QL LAIGR G+NV+ A L
Sbjct: 102 NNRKVVIAVVPPDQLGLAIGRNGRNVQRAKILLKRYYGA 140
>gi|118575641|ref|YP_875384.1| transcription elongation factor [Cenarchaeum symbiosum A]
gi|118194162|gb|ABK77080.1| transcription elongation factor [Cenarchaeum symbiosum A]
Length = 154
Score = 43.4 bits (101), Expect = 0.088, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD---EDV 305
+ +G +G GS ++++ ++ +++V + D A F+ + L +V++V L+ +
Sbjct: 45 NKMGLAIGRGGSNIKSLQNIIKK-NVELVEYHEDPAEFLKHMLDSKLVSEVKLNKRSDGT 103
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
+ VIV ++ + IGR G+NV A L +I
Sbjct: 104 TQAIVIVDPQKKGIVIGRDGRNVEKARMLAKRYFEI 139
>gi|88603707|ref|YP_503885.1| ski2-like helicase [Methanospirillum hungatei JF-1]
gi|88189169|gb|ABD42166.1| DEAD/DEAH box helicase-like protein [Methanospirillum hungatei
JF-1]
Length = 799
Score = 43.4 bits (101), Expect = 0.090, Method: Composition-based stats.
Identities = 35/105 (33%), Positives = 47/105 (44%), Gaps = 9/105 (8%)
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASI--EGFDEETAVEIQGRAREYLEGIDITL 424
N+ + A L G+ D E +A +S IA I EG + EI G R + D
Sbjct: 650 NIGRVRARTLYNAGYPDPEAVARAGLSTIARIIGEGIARQVIDEITGVKRSGIHSSDDDY 709
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDD 469
Q+K EL L IPGI K+ L GI T+ DL + D+
Sbjct: 710 QQKTPEL-----LTDIPGIGKKMAEKLQNAGIITVSDL--LTADE 747
>gi|110669266|ref|YP_659077.1| transcription elongation factor NusA-like protein [Haloquadratum
walsbyi DSM 16790]
gi|109627013|emb|CAJ53489.1| transcription elongation factor nusA [Haloquadratum walsbyi DSM
16790]
Length = 140
Score = 43.4 bits (101), Expect = 0.091, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED--VGRI 308
+G +G G V+AV ++ +++V + + FV NAL PA V V + E
Sbjct: 43 MGTAIGPGGKHVRAVEDDIGT-TVELVEDAETARAFVENALAPAAVRHVTISEQGGECVA 101
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
V +P +AIG G+N+ A +L +I
Sbjct: 102 YVEIPDPDRGIAIGADGKNIHTARKLVRRHYEI 134
>gi|294495213|ref|YP_003541706.1| NusA family KH domain protein [Methanohalophilus mahii DSM 5219]
gi|292666212|gb|ADE36061.1| NusA family KH domain protein [Methanohalophilus mahii DSM 5219]
Length = 141
Score = 43.4 bits (101), Expect = 0.093, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV--GRI 308
+GA +G G + + +D++ +S D TF+ NA V + +
Sbjct: 44 MGAAIGKHGDNINRFKKAVDK-HVDLIEYSDDPITFIKNAFGTIPTKSVEISDKNGKKVA 102
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338
V V LAIG+ G+N+ ++
Sbjct: 103 YVEVSSMNKGLAIGKSGRNIDKIKRIVNRH 132
>gi|13878668|sp|O73948|RADA_METVO RecName: Full=DNA repair and recombination protein radA
gi|3219351|gb|AAC23499.1| RadA [Methanococcus voltae PS]
Length = 322
Score = 43.4 bits (101), Expect = 0.093, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 17/74 (22%)
Query: 433 VSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLG 492
+S+ L +PG+ L E G +A +V +L G
Sbjct: 1 MSDNLTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIE-----------------G 43
Query: 493 TPKDQVESMIIHAR 506
+ MI+ AR
Sbjct: 44 ISEKAAAKMIMGAR 57
>gi|15897168|ref|NP_341773.1| transcription elongation factor NusA [Sulfolobus solfataricus P2]
gi|13813357|gb|AAK40563.1| Transcription termination factor nusA homolog, putative (nusA)
[Sulfolobus solfataricus P2]
Length = 124
Score = 43.4 bits (101), Expect = 0.097, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 8/110 (7%)
Query: 234 GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP 293
+R V S D +G +G G V+ + + + I++V +S + V N + P
Sbjct: 15 NNRIIFLVDSKD-----MGVAIGKSGINVKKLKKIIGKD-IELVAYSDNLEELVKNLMSP 68
Query: 294 AIVTKVVLDE--DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
A V V + + + + + LAIG+ G+NV A + +DI
Sbjct: 69 ARVRSVKVVNTSSKKSVYINIDPQDKGLAIGKNGRNVARAKLILKRYMDI 118
>gi|126460684|ref|YP_001056962.1| DNA repair and recombination protein RadA [Pyrobaculum calidifontis
JCM 11548]
gi|166218766|sp|A3MXX9|RADA_PYRCJ RecName: Full=DNA repair and recombination protein radA
gi|126250405|gb|ABO09496.1| DNA repair and recombination protein RadA [Pyrobaculum calidifontis
JCM 11548]
Length = 332
Score = 43.4 bits (101), Expect = 0.10, Method: Composition-based stats.
Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 18/93 (19%)
Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477
+ Q ++ + GI L E G T+ D+A SV +L
Sbjct: 7 KADAEVAQAATVAASPDIDVEELEGIGRVTGAKLKEKGYYTVRDVAYASVKELAEIVG-- 64
Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMG 510
+++ + ++ AR +G
Sbjct: 65 ----------------SEERAQQIVEAARKMLG 81
>gi|167043882|gb|ABZ08571.1| putative KH domain protein [uncultured marine crenarchaeote
HF4000_APKG3E18]
Length = 154
Score = 43.1 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD---EDVGR 307
+G +G GS ++++ L+ + +++V + D F+ N L P V +V LD + +
Sbjct: 47 MGLAIGKGGSTIKSLQNILKRD-VELVEYFDDPIKFLKNILNPKFVNEVKLDTKPDGSSQ 105
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
+IV + L +GR G+N A DI
Sbjct: 106 ATIIVDHGKKGLVVGRDGRNAEKARLFAKRYFDI 139
>gi|150402535|ref|YP_001329829.1| transcription elongation factor NusA-like protein [Methanococcus
maripaludis C7]
gi|150033565|gb|ABR65678.1| NusA family KH domain protein [Methanococcus maripaludis C7]
Length = 173
Score = 43.1 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 47/125 (37%), Gaps = 3/125 (2%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV--TKVVLDEDVGRI 308
+GA +G G V++ + KID++ +S D F+ N P + D +
Sbjct: 43 IGAAIGKGGENVKSATEKFGK-KIDLIEYSEDVKQFIKNIFAPVELEDVWTKKFSDDLVV 101
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368
V V IG +G+N+ A + G + + + R+ + + Q +
Sbjct: 102 YVRVHPRLRRAVIGDKGKNIDRAVDIAGRLAGVKNIKVVAGLRKDNDKKPKQDEIPEKAA 161
Query: 369 DEIIA 373
+
Sbjct: 162 ESSTN 166
>gi|34558836|gb|AAQ75180.1| 30S ribosomal protein S1 [Alvinella pompejana epibiont 7G3]
Length = 556
Score = 43.1 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 41/204 (20%), Positives = 77/204 (37%), Gaps = 29/204 (14%)
Query: 24 RDVVLSVMADSIQKAARSLYGTMSDIR---VEINPETGDISLFRLLEVVEEVENYTCQIS 80
DV M ++++ + + V+IN + VV+ +S
Sbjct: 11 EDVDFEAM---LEESFKKRDTNNDLVEGTIVKINEAENQV-------VVDIGRKNEAIMS 60
Query: 81 LKVARDRDPSI--DIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138
L RD D +I +IG + + + RV++ + E E+ D+
Sbjct: 61 LDQIRDEDGNIMFNIGDTIPVVITKRNGERVSISYELAEKRIALSE-----FIDEYDDEE 115
Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP-GDRVKSYIYDVRREQRGPQ 197
I+ G + R G +VD+ + + + + + P G RVK+ I V ++++
Sbjct: 116 EYIVEGVIVRKNRGGFVVDVSGLEFFMPKTLSYISPKINPIGKRVKALIVKVDKDKQS-- 173
Query: 198 VLLSRTHPQFMVKLFHMEVPEIYN 221
V++SR L E EI
Sbjct: 174 VIVSR------KDLIEREKKEIQE 191
>gi|284174414|ref|ZP_06388383.1| transcription elongation factor NusA [Sulfolobus solfataricus 98/2]
Length = 119
Score = 43.1 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 8/110 (7%)
Query: 234 GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP 293
+R V S D +G +G G V+ + + + I++V +S + V N + P
Sbjct: 10 NNRIIFLVDSKD-----MGVAIGKSGINVKKLKKIIGKD-IELVAYSDNLEELVKNLMSP 63
Query: 294 AIVTKVVLDE--DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
A V V + + + + + LAIG+ G+NV A + +DI
Sbjct: 64 ARVRSVKVVNTSSKKSVYINIDPQDKGLAIGKNGRNVARAKLILKRYMDI 113
>gi|134045257|ref|YP_001096743.1| transcription elongation factor NusA-like protein [Methanococcus
maripaludis C5]
gi|132662882|gb|ABO34528.1| NusA family KH domain protein [Methanococcus maripaludis C5]
Length = 173
Score = 43.1 bits (100), Expect = 0.12, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 3/125 (2%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV--TKVVLDEDVGRI 308
+GA +G G V+ + KID++ +S D+ F+ N P + D +
Sbjct: 43 IGAAIGKGGENVRNATEKFGK-KIDLIEYSEDAKQFIKNIFAPIELEDVWTKKFSDDLVV 101
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368
V V IG +G+N+ A + G + + + ++ + + Q +
Sbjct: 102 YVRVHPRLRRAVIGDKGKNIDRAVDIAGRLAGVKNIKVVAGLKKDNDKKPKQEEIPEKAA 161
Query: 369 DEIIA 373
+
Sbjct: 162 ESSTN 166
>gi|302348977|ref|YP_003816615.1| transcription elongation factor NusA-like protein [Acidilobus
saccharovorans 345-15]
gi|302329389|gb|ADL19584.1| transcription elongation factor NusA-like protein [Acidilobus
saccharovorans 345-15]
Length = 150
Score = 43.1 bits (100), Expect = 0.12, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 8/122 (6%)
Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281
G + +A+ G+R V +D +G +G G V+ + L +++V +S
Sbjct: 29 GAMVYRAIEDAEGNRIFYLVDKND-----IGKAIGKDGRNVKTLSRILNK-NVEVVEYSA 82
Query: 282 DSATFVINALRPAIVTKVVLDE--DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339
D + V N V KV + + D + V V ++ AIGR G+NV+ A +
Sbjct: 83 DLESMVRNLFPGVTVLKVDVVDKNDGKVVYVKVKDDEKGKAIGRDGRNVKRARIILTKLF 142
Query: 340 DI 341
++
Sbjct: 143 NV 144
>gi|268323375|emb|CBH36963.1| putative NusA protein homolog [uncultured archaeon]
Length = 139
Score = 43.1 bits (100), Expect = 0.12, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL---DEDVGR 307
+G +G GS + V +R + I++V S D+ F+ N RPA + V L D
Sbjct: 41 MGLAIGKGGSNITKVKNMVRKD-IEVVEHSTDAKEFIENLFRPAEIKSVELLTDDNGKSC 99
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
V V +Q +AIG+ G+ ++ L + I
Sbjct: 100 AYVAVLTKQKGIAIGKNGERIKKVKLLVKRNLGI 133
>gi|76803074|ref|YP_331169.1| 50S ribosomal protein L32e [Natronomonas pharaonis DSM 2160]
gi|76558939|emb|CAI50535.1| ribosomal protein L32.eR [Natronomonas pharaonis DSM 2160]
Length = 240
Score = 43.1 bits (100), Expect = 0.12, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 24/63 (38%)
Query: 435 EELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTP 494
EEL I G+ L E GI+T++DL S D+L + + L
Sbjct: 10 EELTDISGVGEAKAETLREAGIETVDDLREKSQDELADIDGVGNALAARIKADVGDLEVD 69
Query: 495 KDQ 497
+
Sbjct: 70 AET 72
>gi|315425376|dbj|BAJ47042.1| N utilization substance protein A [Candidatus Caldiarchaeum
subterraneum]
gi|315426557|dbj|BAJ48187.1| N utilization substance protein A [Candidatus Caldiarchaeum
subterraneum]
gi|315426615|dbj|BAJ48243.1| N utilization substance protein A [Candidatus Caldiarchaeum
subterraneum]
Length = 144
Score = 43.1 bits (100), Expect = 0.12, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV--- 305
D A +G G++++ +V R +I +V +S D++ F+ N L PA V + V +
Sbjct: 44 DLKKALMG-HGAKIKELVRIFRK-RIKVVEYSTDASVFIKNLLYPAEVIEPVRVAEKPDG 101
Query: 306 -GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
+ V V +AIG+ G+N+ LA L +I
Sbjct: 102 KKIMVVNVNPRDKGVAIGKDGKNINLARLLVKRHFNI 138
>gi|257051865|ref|YP_003129698.1| transcription elongation factor NusA-like protein [Halorhabdus
utahensis DSM 12940]
gi|256690628|gb|ACV10965.1| NusA family KH domain protein [Halorhabdus utahensis DSM 12940]
Length = 142
Score = 43.1 bits (100), Expect = 0.13, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED--VGRI 308
VG +G G V + L + + +V +P FV NAL PA V V ++E
Sbjct: 45 VGKAIGRDGETVARIEDRLGRD-VTLVEDAPTPEGFVANALAPAAVYDVTIEERDGERVA 103
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
V + AIG G+ + LA +L G +I
Sbjct: 104 FADVDEADTGAAIGTEGRTIELARRLAGRHFEI 136
>gi|45358929|ref|NP_988486.1| transcription elongation factor NusA [Methanococcus maripaludis S2]
gi|45047795|emb|CAF30922.1| KH domain:KH domain, type 1 [Methanococcus maripaludis S2]
Length = 173
Score = 43.1 bits (100), Expect = 0.13, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 46/125 (36%), Gaps = 3/125 (2%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV--TKVVLDEDVGRI 308
+GA +G G V+ + KID++ +S D F+ N P V D +
Sbjct: 43 IGAAIGKGGENVRNATEKFGK-KIDLIEYSEDVKQFIKNIFAPIEVEDVWTKKFGDDLVV 101
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368
+ V IG +G+N+ A + G + + + R+ + + Q +
Sbjct: 102 YIRVHPRFRRAIIGDKGKNIDRAVDIAGRLAGVKNIKVVAGLRKDNDKKPKQEEVPEKAA 161
Query: 369 DEIIA 373
+
Sbjct: 162 ESSKN 166
>gi|163753432|ref|ZP_02160556.1| 50S ribosomal protein L21 [Kordia algicida OT-1]
gi|161327164|gb|EDP98489.1| 50S ribosomal protein L21 [Kordia algicida OT-1]
Length = 215
Score = 43.1 bits (100), Expect = 0.13, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 4/90 (4%)
Query: 395 IASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGEN 454
+ +I + A + A++ + K + G +++L I GI KI L E
Sbjct: 98 VENIVASGAKKAAPKKEEAKKEVAKPAEKPAAK-KATGKADDLKKIEGIGPKIASTLVEA 156
Query: 455 GIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484
GI T A + + SE G
Sbjct: 157 GIAT---FAELAKTEPAKISEIISGVRGNH 183
>gi|189237154|ref|XP_973939.2| PREDICTED: similar to igf2 mRNA binding protein, putative
[Tribolium castaneum]
Length = 1116
Score = 43.1 bits (100), Expect = 0.13, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 20/113 (17%)
Query: 249 DPVGACVGMRGSRVQAVV-----------------TELRDEKIDIVVWSPD---SATFVI 288
+ VGA +G +GS ++ ++ E ++E+ +V SP+ A ++I
Sbjct: 359 NAVGAIIGTKGSHIRNIIRFSGASVKIAPIDETKPQETQNERRVTIVGSPEAQWKAQYLI 418
Query: 289 NALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
D+ +E++VP Q+ IG+ GQNVR ++TG I +
Sbjct: 419 FEKMREEGFVAGSDDVRLTVEIMVPSSQVGRIIGKGGQNVRELQRVTGSVIKL 471
>gi|261601835|gb|ACX91438.1| NusA family KH domain protein [Sulfolobus solfataricus 98/2]
Length = 143
Score = 43.1 bits (100), Expect = 0.13, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 8/110 (7%)
Query: 234 GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP 293
+R V S D +G +G G V+ + + + I++V +S + V N + P
Sbjct: 34 NNRIIFLVDSKD-----MGVAIGKSGINVKKLKKIIGKD-IELVAYSDNLEELVKNLMSP 87
Query: 294 AIVTKVVLDE--DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
A V V + + + + + LAIG+ G+NV A + +DI
Sbjct: 88 ARVRSVKVVNTSSKKSVYINIDPQDKGLAIGKNGRNVARAKLILKRYMDI 137
>gi|284163650|ref|YP_003401929.1| NusA family KH domain protein [Haloterrigena turkmenica DSM 5511]
gi|284013305|gb|ADB59256.1| NusA family KH domain protein [Haloterrigena turkmenica DSM 5511]
Length = 146
Score = 42.7 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE-DVGRIEVIVP 313
+G G V+ + + +V + D FV NAL PA V V + E D V V
Sbjct: 54 IGPEGRTVRQYEERVGK-PVRLVEDADDPEAFVANALSPAAVYNVTISENDDTVAYVEVA 112
Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDI 341
E +AIG G+ + A L I
Sbjct: 113 DEDRGVAIGSNGRTIEAARTLAQRHFGI 140
>gi|159905690|ref|YP_001549352.1| transcription elongation factor NusA-like protein [Methanococcus
maripaludis C6]
gi|159887183|gb|ABX02120.1| NusA family KH domain protein [Methanococcus maripaludis C6]
Length = 173
Score = 42.7 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 47/125 (37%), Gaps = 3/125 (2%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV--TKVVLDEDVGRI 308
+GA +G G V++ + KID++ +S D F+ N P + D +
Sbjct: 43 IGAAIGKGGENVKSATEKFGK-KIDLIEYSEDVKQFIKNIFAPIELEDVWTKKFSDDLVV 101
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368
V V IG +G+N+ A + G + + + R+ + + Q +
Sbjct: 102 YVRVHPRLRRAVIGDKGKNIDRAVDIAGRLAGVKNIKVVAGLRKDNDKKPKQEEIPEKAA 161
Query: 369 DEIIA 373
+
Sbjct: 162 ESSKN 166
>gi|150399427|ref|YP_001323194.1| transcription elongation factor NusA-like protein [Methanococcus
vannielii SB]
gi|141390|sp|P14026|NUSA_METVS RecName: Full=NusA protein homolog
gi|44783|emb|CAA34088.1| unnamed protein product [Methanococcus vannielii]
gi|150012130|gb|ABR54582.1| NusA family KH domain protein [Methanococcus vannielii SB]
Length = 173
Score = 42.7 bits (99), Expect = 0.15, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 47/125 (37%), Gaps = 3/125 (2%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG--RI 308
+GA +G G V+ + KID++ +S D F+ N P + V + + +
Sbjct: 43 IGAAIGKGGENVKNATDKFGK-KIDLIEYSEDLKQFIKNIFAPIELEDVWVKKFGNDLVV 101
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368
V V IG +G+N+ A + G + + + R+ N + +
Sbjct: 102 YVRVHPRLRRAIIGDKGKNIDRAVDIAGRLAGVKNIKVVAGLRKDADNRPKKDEIPEKAA 161
Query: 369 DEIIA 373
+
Sbjct: 162 ESSEN 166
>gi|167042228|gb|ABZ06960.1| putative KH domain protein [uncultured marine crenarchaeote
HF4000_ANIW93I24]
Length = 154
Score = 42.7 bits (99), Expect = 0.15, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD---EDVGR 307
+G +G GS ++++ L+ +++V + D F+ N L P V +V LD + +
Sbjct: 47 MGLAIGKGGSNIKSLQNILKR-NVELVEYFDDPIKFLKNILNPKFVNEVKLDTKPDGSSQ 105
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
+IV + L +GR G+N A +I
Sbjct: 106 ATIIVDHGKKGLVVGRDGRNAEKARLFAKRYFNI 139
>gi|270007202|gb|EFA03650.1| hypothetical protein TcasGA2_TC013744 [Tribolium castaneum]
Length = 710
Score = 42.7 bits (99), Expect = 0.17, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 20/113 (17%)
Query: 249 DPVGACVGMRGSRVQAVV-----------------TELRDEKIDIVVWSPD---SATFVI 288
+ VGA +G +GS ++ ++ E ++E+ +V SP+ A ++I
Sbjct: 510 NAVGAIIGTKGSHIRNIIRFSGASVKIAPIDETKPQETQNERRVTIVGSPEAQWKAQYLI 569
Query: 289 NALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
D+ +E++VP Q+ IG+ GQNVR ++TG I +
Sbjct: 570 FEKMREEGFVAGSDDVRLTVEIMVPSSQVGRIIGKGGQNVRELQRVTGSVIKL 622
>gi|154151612|ref|YP_001405230.1| NusA family protein [Candidatus Methanoregula boonei 6A8]
gi|154000164|gb|ABS56587.1| NusA family KH domain protein [Methanoregula boonei 6A8]
Length = 147
Score = 42.7 bits (99), Expect = 0.17, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEV 310
+G +G +G ++ + L +I++V ++ D F+ N +PA V + + G + V
Sbjct: 45 MGLAIGKKGENIKRLQNVLGR-RIEMVEYAEDPVLFITNIFKPAEVIGIERGAEEGPVNV 103
Query: 311 IV-PKEQLSLAIGRRGQNVRLASQLT 335
+V K L +AIG+ G N+ A L
Sbjct: 104 LVNKKSDLGIAIGKAGCNIEKARILC 129
>gi|313679748|ref|YP_004057487.1| hypothetical protein Ocepr_0857 [Oceanithermus profundus DSM 14977]
gi|313152463|gb|ADR36314.1| hypothetical protein Ocepr_0857 [Oceanithermus profundus DSM 14977]
Length = 192
Score = 42.3 bits (98), Expect = 0.21, Method: Composition-based stats.
Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 2/134 (1%)
Query: 330 LASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELAC 389
L L GW ++ + + R + + Q ++ DE L+ +EE A
Sbjct: 7 LIGFLIGWVVEWLIDVAYWRPRLRSARAELETCRQQLD-DERERAKLLQAKIEALEEEAK 65
Query: 390 VKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKV 449
+ + +EG + + + A L + + ++L I GI KI+
Sbjct: 66 GLRARLQRLEG-ERDRYRNERDAALAELRSFATEADRPGEAVSPGDDLKRIEGIGPKIER 124
Query: 450 ALGENGIKTMEDLA 463
L G++T E+LA
Sbjct: 125 LLQRAGVRTFEELA 138
>gi|300779764|ref|ZP_07089620.1| chaperonin GroEL [Corynebacterium genitalium ATCC 33030]
gi|300533874|gb|EFK54933.1| chaperonin GroEL [Corynebacterium genitalium ATCC 33030]
Length = 535
Score = 42.3 bits (98), Expect = 0.23, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 12/131 (9%)
Query: 374 HLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGV 433
LV EG +V A I I E+ E++ RA + +I +
Sbjct: 96 QALVNEGLRNVAAGAN-PIELNKGISAATEKVVEELKARATDVSSSEEIANVATVSSRDP 154
Query: 434 SEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGT 493
+ + S +G++G+ T+E+ S+D + +E GFLS
Sbjct: 155 E-----VGEMVSGAMDKVGKDGVLTVEE--SQSIDSYVDVTEGISFEK----GFLSPYFM 203
Query: 494 PKDQVESMIIH 504
+ ++
Sbjct: 204 TDPEAGQAVLE 214
>gi|109157521|pdb|2F1H|A Chain A, Recombinase In Complex With Amp-Pnp And Potassium
gi|109157522|pdb|2F1I|A Chain A, Recombinase In Complex With Amp-Pnp
gi|109157523|pdb|2F1J|A Chain A, Recombinase In Complex With Adp
Length = 322
Score = 42.3 bits (98), Expect = 0.23, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 22/72 (30%), Gaps = 17/72 (23%)
Query: 435 EELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTP 494
+ L +PG+ L E G +A +V +L G
Sbjct: 3 DNLTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIE-----------------GIS 45
Query: 495 KDQVESMIIHAR 506
+ MI+ AR
Sbjct: 46 EKAAAKMIMGAR 57
>gi|52695616|pdb|1T4G|A Chain A, Atpase In Complex With Amp-Pnp
gi|56967254|pdb|1XU4|A Chain A, Atpase In Complex With Amp-Pnp, Magnesium And Potassium
Co-F
gi|88193103|pdb|2FPK|A Chain A, Rada Recombinase In Complex With Adp
gi|88193104|pdb|2FPL|A Chain A, Rada Recombinase In Complex With Amp-Pnp And Low
Concentration Of K+
gi|88193105|pdb|2FPM|A Chain A, Rada Recombinase In Complex With Amp-Pnp And High
Concentration Of K+
gi|114793501|pdb|2B21|A Chain A, Rada Recombinase In Complex With Amppnp At Ph 6.0
gi|118138042|pdb|2I1Q|A Chain A, Rada Recombinase In Complex With Calcium
gi|257097225|pdb|3FYH|A Chain A, Recombinase In Complex With Adp And Metatungstate
Length = 322
Score = 41.9 bits (97), Expect = 0.24, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 22/72 (30%), Gaps = 17/72 (23%)
Query: 435 EELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTP 494
+ L +PG+ L E G +A +V +L G
Sbjct: 3 DNLTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIE-----------------GIS 45
Query: 495 KDQVESMIIHAR 506
+ MI+ AR
Sbjct: 46 EKAAAKMIMGAR 57
>gi|315427207|dbj|BAJ48820.1| DNA repair protein RadA [Candidatus Caldiarchaeum subterraneum]
gi|315427272|dbj|BAJ48884.1| DNA repair protein RadA [Candidatus Caldiarchaeum subterraneum]
Length = 320
Score = 41.9 bits (97), Expect = 0.26, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 39/87 (44%), Gaps = 20/87 (22%)
Query: 435 EELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTP 494
++ +PG+ +K+ L E G T+E +A +V +L+ + G
Sbjct: 6 NDIEELPGVSAKLAEKLRELGYSTVESIATATVSELV------------------AAGVD 47
Query: 495 KDQVESMIIHARY--KMGWIEKEKVAD 519
++ +I AR ++ W+ +++A+
Sbjct: 48 EEHASRIISAAREGIEIAWVTAKELAE 74
>gi|161527861|ref|YP_001581687.1| NusA family protein [Nitrosopumilus maritimus SCM1]
gi|160339162|gb|ABX12249.1| NusA family KH domain protein [Nitrosopumilus maritimus SCM1]
Length = 154
Score = 41.9 bits (97), Expect = 0.28, Method: Composition-based stats.
Identities = 21/98 (21%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD---E 303
+ +G +G G ++++ ++ +++V + D A F+ N L +V++V ++ +
Sbjct: 43 NTGKMGLAIGKGGMHIKSLQNIVKR-NVELVEFDEDPAKFLSNLLNSKLVSEVKINTRAD 101
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
+ V+V + + +GR G+N A L DI
Sbjct: 102 GTKQAIVMVDPRKKGIVVGREGRNAEKARMLAKRYFDI 139
>gi|156740937|ref|YP_001431066.1| RNA-binding S1 domain-containing protein [Roseiflexus castenholzii
DSM 13941]
gi|156232265|gb|ABU57048.1| RNA binding S1 domain protein [Roseiflexus castenholzii DSM 13941]
Length = 388
Score = 41.9 bits (97), Expect = 0.28, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 93 IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG 152
+G + + +D R + +++ Q+ R+A++ R E + G+I++G V ++
Sbjct: 169 VGQTIPLKVIEVDRDRNRLVLSERSATQEWRKAQKQRLLTELQP--GDILTGRVNQLTNF 226
Query: 153 NVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQ 206
+DLG +DG+ E RE L PG V+ + ++ E+ + L R P
Sbjct: 227 GAFIDLGGADGLAHISELSWQRVNHPREVLSPGQEVRVMVVEIDAERERIGLSLRRLQPN 286
>gi|126459376|ref|YP_001055654.1| Fis family transcriptional regulator [Pyrobaculum calidifontis JCM
11548]
gi|126249097|gb|ABO08188.1| transcriptional regulator, Fis family [Pyrobaculum calidifontis JCM
11548]
Length = 312
Score = 41.9 bits (97), Expect = 0.29, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 435 EELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTP 494
+ L + G+ K L E G+ ++E LA +V++L+ ++ + +GT
Sbjct: 8 DPLEGLEGVGPKTLERLRELGVTSVEHLAEFTVEELVEAGVEYDRAVKILQQAIQRVGTT 67
Query: 495 KDQVESMIIHARY 507
+ + AR
Sbjct: 68 RP------MTARE 74
>gi|291532985|emb|CBL06098.1| hypothetical protein MHY_11450 [Megamonas hypermegale ART12/1]
Length = 65
Score = 41.9 bits (97), Expect = 0.30, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 34/61 (55%)
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368
VIVP QLSLAIG+ GQN RLA++LTGW IDI +E + + + + +
Sbjct: 3 RVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSETQAAEEGFDSDDMNMVNVVSEESF 62
Query: 369 D 369
Sbjct: 63 S 63
>gi|91773155|ref|YP_565847.1| transcription elongation factor NusA-like protein [Methanococcoides
burtonii DSM 6242]
gi|91712170|gb|ABE52097.1| Transcription termination factor NusA [Methanococcoides burtonii
DSM 6242]
Length = 141
Score = 41.9 bits (97), Expect = 0.30, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEK-IDIVVWSPDSATFVINALRPAIVTKVVLDE-- 303
+ +GA +G G + V +L +K I+++ +S + TF+ NA V V +
Sbjct: 40 NTGDMGAAIGKCGDNLNRV--KLSVDKHIELIEYSAEPVTFIKNAFGTVSVRSVRISSKG 97
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338
D V V + LAIGR G N+ ++ G
Sbjct: 98 DKNIAYVDVAANEKGLAIGRNGSNIDKIKRVVGRH 132
>gi|148658373|ref|YP_001278578.1| RNA-binding S1 domain-containing protein [Roseiflexus sp. RS-1]
gi|148570483|gb|ABQ92628.1| RNA binding S1 domain protein [Roseiflexus sp. RS-1]
Length = 393
Score = 41.5 bits (96), Expect = 0.30, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 93 IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG 152
+G + + +D R + +++ Q+ R+A++ R E + G+I++G V ++
Sbjct: 169 VGQTIPLKVIEVDRDRNRLVLSERSATQEWRKAQKQRLLTELQP--GDILTGRVNQLTNF 226
Query: 153 NVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQ 206
+DLG +DG+ E RE L PG V+ + ++ E+ + L R P
Sbjct: 227 GAFIDLGGADGLAHISELSWQRVNHPREVLSPGQEVRVMVVEIDAERERIGLSLRRLQPN 286
>gi|18313927|ref|NP_560594.1| DNA repair protein radA [Pyrobaculum aerophilum str. IM2]
gi|18161497|gb|AAL64776.1| DNA repair protein radA [Pyrobaculum aerophilum str. IM2]
Length = 311
Score = 41.5 bits (96), Expect = 0.33, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 435 EELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLG 492
E+L SI G+ K L E G+ ++E LA +V++L+ ++ L +G
Sbjct: 6 EDLQSIEGVGPKTLEKLRELGVTSVEHLAEFTVEELVEAGIEYDRAVKLLQQALQRVG 63
>gi|156742613|ref|YP_001432742.1| hypothetical protein Rcas_2652 [Roseiflexus castenholzii DSM 13941]
gi|156233941|gb|ABU58724.1| conserved hypothetical protein [Roseiflexus castenholzii DSM 13941]
Length = 437
Score = 41.5 bits (96), Expect = 0.33, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 24/62 (38%)
Query: 433 VSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLG 492
+++L IPGI I L GI T LA CS DL W+ I + +
Sbjct: 106 PADDLQQIPGIGPAIARRLRTAGITTFAALAACSPSDLAAWTGRSAEQIVRMGWIERARD 165
Query: 493 TP 494
Sbjct: 166 LT 167
>gi|218961954|ref|YP_001741729.1| putative Ribosomal protein S1 [Candidatus Cloacamonas
acidaminovorans]
gi|167730611|emb|CAO81523.1| putative Ribosomal protein S1 [Candidatus Cloacamonas
acidaminovorans]
Length = 503
Score = 41.5 bits (96), Expect = 0.34, Method: Composition-based stats.
Identities = 35/160 (21%), Positives = 66/160 (41%), Gaps = 18/160 (11%)
Query: 114 AKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI-- 171
++++RE ER L K KVG+I+ G V R+ +DLG +G++ E
Sbjct: 183 VSHRQLEEMREQERKETALA-KLKVGDIVKGKVLRMTTFGAFIDLGGIEGLMHVSEISWQ 241
Query: 172 ----SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227
++ L+ G ++ I D+ +G ++ LSR + F + + E++ G +
Sbjct: 242 HIVRPQDELKKGQEIEVKILDI----KGEKIALSRK--VLLEDPFEVAMKELHEGDIINC 295
Query: 228 AVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVT 267
V R A + + P+ SR + +
Sbjct: 296 RVLRLHNFGAFAELKPGVEGLIPISEM-----SRNRNISH 330
>gi|14601671|ref|NP_148212.1| transcription elongation factor NusA-like protein [Aeropyrum pernix
K1]
gi|85544478|pdb|2CXC|A Chain A, Crystal Structure Of Archaeal Transcription Termination
Factor Nusa
gi|88192683|pdb|2CY1|A Chain A, Crystal Structure Of Ape1850
gi|5105541|dbj|BAA80854.1| NusA protein homolog [Aeropyrum pernix K1]
Length = 144
Score = 41.5 bits (96), Expect = 0.36, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV--GRIEVIVPKE 315
RG R+ ++ E + I++V +S D V N + + + E ++ + V ++
Sbjct: 53 RGGRLIKLLREALGKNIEVVEYSSDLERIVKNLFPGVKIESINVRERNGVKQVVIKVSED 112
Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDI 341
AIG+ G+NV+ A + +
Sbjct: 113 DKGAAIGKGGKNVKRARLVLSKLFGV 138
>gi|167044139|gb|ABZ08822.1| putative KH domain protein [uncultured marine crenarchaeote
HF4000_APKG5C13]
Length = 154
Score = 41.5 bits (96), Expect = 0.37, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD---EDVGR 307
+G +G GS ++++ L+ +++V + D F+ N L P V +V LD + +
Sbjct: 47 MGLAIGKGGSNIKSLQNILKR-NVELVEYFDDPIKFLKNILNPKFVNEVKLDTKPDGSSQ 105
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
+ +IV + L +GR G+N A DI
Sbjct: 106 VTIIVDHGKKGLVVGRDGRNAEKARLFAKRYFDI 139
>gi|15791386|ref|NP_281210.1| transcription elongation factor NusA-like protein [Halobacterium
sp. NRC-1]
gi|169237147|ref|YP_001690347.1| transcription elongation factor NusA-like protein [Halobacterium
salinarum R1]
gi|139955|sp|P15739|NUSA_HALSA RecName: Full=NusA protein homolog
gi|43544|emb|CAA40428.1| ORF 139 [Halobacterium salinarum]
gi|10582041|gb|AAG20690.1| transcription termination-antitermination factor [Halobacterium sp.
NRC-1]
gi|167728213|emb|CAP15001.1| putative transcription termination factor nusA [Halobacterium
salinarum R1]
Length = 139
Score = 41.1 bits (95), Expect = 0.41, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE-DVGRIE 309
+GA +G GSRV A+ L + +V +P + FV NAL PA V V + E D
Sbjct: 43 MGAAIGDGGSRVDALEATLGR-SVVLVEDAPTAEGFVANALSPAAVYNVTVSENDTTVAY 101
Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
V E +AIG G N+ A +L DI
Sbjct: 102 AEVAHEDKGVAIGADGTNIETAKELAARHFDI 133
>gi|145591606|ref|YP_001153608.1| Fis family transcriptional regulator [Pyrobaculum arsenaticum DSM
13514]
gi|145283374|gb|ABP50956.1| transcriptional regulator, Fis family [Pyrobaculum arsenaticum DSM
13514]
Length = 312
Score = 41.1 bits (95), Expect = 0.42, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 28/58 (48%)
Query: 435 EELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLG 492
++L S+ G+ K L E G+ ++E LA +V++L+ ++ L+ G
Sbjct: 9 DDLSSLEGVGPKTLERLRELGVVSVEHLAEFTVEELVEAGVEYDRAVKIIQQALAKAG 66
>gi|222445203|ref|ZP_03607718.1| hypothetical protein METSMIALI_00826 [Methanobrevibacter smithii
DSM 2375]
gi|261350235|ref|ZP_05975652.1| transcription termination factor NusA [Methanobrevibacter smithii
DSM 2374]
gi|222434768|gb|EEE41933.1| hypothetical protein METSMIALI_00826 [Methanobrevibacter smithii
DSM 2375]
gi|288861021|gb|EFC93319.1| transcription termination factor NusA [Methanobrevibacter smithii
DSM 2374]
Length = 143
Score = 41.1 bits (95), Expect = 0.43, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 251 VGACVGMRGSRVQAVVTELRDEK-IDIVVWSPDSATFVINALRPAIVTKVVLDED---VG 306
+G +G GS V V + +K I+IV S D F+ N L PA V V + +
Sbjct: 45 MGLAIGKGGSTVSKVQRAV--DKGIEIVELSDDPIQFIKNLLSPAEVQGVKVLQKESGEK 102
Query: 307 RIEVIVPKEQLSLAIGRRGQNV 328
V +AIG+ G N+
Sbjct: 103 IATVTADNTNKRIAIGKNGVNI 124
>gi|124515665|gb|EAY57174.1| ribosomal protein S1 [Leptospirillum rubarum]
Length = 475
Score = 41.1 bits (95), Expect = 0.44, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 58/138 (42%), Gaps = 10/138 (7%)
Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134
QI L+ R D IG + + M+ R + +++V++++ R+ +
Sbjct: 40 PGSQIDLRPVR--DMDRLIGQTIQVRIIKMNKKRGNIIVSRRVLLEEWRDRRKKVTMDAL 97
Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188
K+ GEI+ G VK + +DLG DG++ + +E + GD+V +
Sbjct: 98 KE--GEILEGIVKNITDYGAFIDLGGIDGLLHITDMSWGRVTNPQEFMNVGDKVNVVVLK 155
Query: 189 VRREQRGPQVLLSRTHPQ 206
+E + L + P
Sbjct: 156 HDKETGRVSLGLKQLTPD 173
>gi|18312075|ref|NP_558742.1| DNA repair and recombination protein RadA [Pyrobaculum aerophilum
str. IM2]
gi|20139514|sp|Q8ZYR9|RADA_PYRAE RecName: Full=DNA repair and recombination protein radA
gi|18159503|gb|AAL62924.1| DNA repair protein radA [Pyrobaculum aerophilum str. IM2]
gi|18478907|gb|AAL73354.1| DNA repair protein RadA [Pyrobaculum aerophilum]
Length = 333
Score = 41.1 bits (95), Expect = 0.46, Method: Composition-based stats.
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 22/101 (21%)
Query: 410 QGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDD 469
+ + + + ++ V E + GI L E G T+ D+A SV +
Sbjct: 4 KKKKADAEVSQTQATVEVRADVDVEE----LEGIGRVTGAKLKERGYYTVRDIAFASVKE 59
Query: 470 LLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMG 510
L +D+ + +I AR +G
Sbjct: 60 LAEIIG------------------NEDRAQQIIEAARKMLG 82
>gi|150401406|ref|YP_001325172.1| DNA repair and recombination protein RadA [Methanococcus aeolicus
Nankai-3]
gi|150014109|gb|ABR56560.1| DNA repair and recombination protein RadA [Methanococcus aeolicus
Nankai-3]
Length = 322
Score = 41.1 bits (95), Expect = 0.46, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 17/74 (22%)
Query: 433 VSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLG 492
+++ L +PG+ L E G +A ++ +L+ G
Sbjct: 1 MTDNLTDLPGVGPSTAEKLIEGGYIDFMKIATATIGELVDIE-----------------G 43
Query: 493 TPKDQVESMIIHAR 506
+ MI+ AR
Sbjct: 44 ISEKAAAKMIMGAR 57
>gi|150401215|ref|YP_001324981.1| transcription elongation factor NusA-like protein [Methanococcus
aeolicus Nankai-3]
gi|150013918|gb|ABR56369.1| NusA family KH domain protein [Methanococcus aeolicus Nankai-3]
Length = 184
Score = 41.1 bits (95), Expect = 0.47, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 57/163 (34%), Gaps = 10/163 (6%)
Query: 220 YNGIVQVKAVSRDPGSRAKLAVFSSDSSI------DPVGACVGMRGSRVQAVVTELRDEK 273
+GI+++ + + + S D I +GA +G G V+ + +
Sbjct: 7 KDGIMKMALFEKITNAEVMDCI-SDDERIIFIVKEGDIGAAIGKGGENVRNATEKFGK-R 64
Query: 274 IDIVVWSPDSATFVINALRPAIVTKVVL--DEDVGRIEVIVPKEQLSLAIGRRGQNVRLA 331
ID+V +S D FV N L P + V + D + V V + +G RG+N+
Sbjct: 65 IDVVEYSTDLKQFVRNLLAPLKLDDVWVKKYNDDLVVYVRVHPKLRKSIVGDRGKNINRT 124
Query: 332 SQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAH 374
+ D + S +R + +
Sbjct: 125 VDIIKRLTDATNIKVISDSRPPKKFNSNKPKTDKPAEKQSTDK 167
>gi|71024351|ref|XP_762405.1| hypothetical protein UM06258.1 [Ustilago maydis 521]
gi|46101905|gb|EAK87138.1| hypothetical protein UM06258.1 [Ustilago maydis 521]
Length = 950
Score = 41.1 bits (95), Expect = 0.47, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 44/114 (38%), Gaps = 14/114 (12%)
Query: 16 VAYEKSIDRDVVLSVMADSIQKAA--RSLYGTMSDIRVEINPETGDISLF-RLLEVVEEV 72
+ EKS++ + +L+ + ++ A + G + IRV I G I + R +
Sbjct: 610 LEQEKSLEPESILAAIETALASGAPLENTEGQVKGIRVAI-RRDGLIRVTERNITAFPST 668
Query: 73 ENYTCQISLKVARDRDPSIDIGGVV----SDPLPPMDFGRVAVQSAKQVIIQKV 122
+ + PS+ + + + L P+ F + + + Q+V
Sbjct: 669 LDKGIE------AAPPPSVRLDSIATRVRTLDLEPIVFNKTDARGFYEAAKQRV 716
>gi|124485200|ref|YP_001029816.1| aminotransferase, class I and II [Methanocorpusculum labreanum Z]
gi|124362741|gb|ABN06549.1| NusA family KH domain protein [Methanocorpusculum labreanum Z]
Length = 157
Score = 40.7 bits (94), Expect = 0.54, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 5/116 (4%)
Query: 230 SRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN 289
+RD K + + +G +G +G+ ++ K+++V ++PD F+ N
Sbjct: 25 ARDCVVDDKFSRILFVINPGEMGLAIGKKGASIKKASDAFGK-KVEVVEYNPDKVQFIRN 83
Query: 290 ALRPAIVTKVVLDEDVGR----IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
P V V +ED + V LAIG+ G+N+ A +L DI
Sbjct: 84 CFLPVHVQTVTFEEDEEENTEVAYIEVADTDRGLAIGKEGRNIIKAKKLAFRQFDI 139
>gi|257387054|ref|YP_003176827.1| poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit
[Halomicrobium mukohataei DSM 12286]
gi|257169361|gb|ACV47120.1| poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit
[Halomicrobium mukohataei DSM 12286]
Length = 464
Score = 40.7 bits (94), Expect = 0.55, Method: Composition-based stats.
Identities = 27/156 (17%), Positives = 48/156 (30%)
Query: 333 QLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKI 392
QL G +I E + +E + + E +
Sbjct: 309 QLMGEYDHLIPPEASKPFNEVVGSEDVTTMEFSTGHIGLSVSSSTHENLWPDVCDWYKER 368
Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALG 452
+ A D + AV I + + + ++ S+ GI L
Sbjct: 369 NRQAEASDDDSDEAVPIDVESPADDAAESDDGEAAHESAADAPDVASVDGIGPTYADRLR 428
Query: 453 ENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFL 488
E GI+T++DLAG +L +E + + L
Sbjct: 429 EAGIETVDDLAGHDAAELAEIAETTESRVRDWLDQL 464
>gi|118579437|ref|YP_900687.1| HNH nuclease [Pelobacter propionicus DSM 2379]
gi|118502147|gb|ABK98629.1| HNH nuclease [Pelobacter propionicus DSM 2379]
Length = 326
Score = 40.7 bits (94), Expect = 0.55, Method: Composition-based stats.
Identities = 26/134 (19%), Positives = 46/134 (34%), Gaps = 12/134 (8%)
Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA---V 229
RE LR + + ++ + R + ++R + L + IV+ V
Sbjct: 143 REVLREALLLSCFSEELAAQLREQSI-INREAFDYSRVLEEQAHLPLVKEIVEEYNYRLV 201
Query: 230 SRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN 289
+RD G R ++ V + D C G R+ + IV WS + N
Sbjct: 202 ARDQGFR-RIVVTTYDHR---CALC----GVRIVTPEGHTAVDAAHIVPWSKSRNDDIRN 253
Query: 290 ALRPAIVTKVVLDE 303
+ + DE
Sbjct: 254 GMALCKLCHWAFDE 267
>gi|206602279|gb|EDZ38761.1| Ribosomal protein S1 [Leptospirillum sp. Group II '5-way CG']
Length = 591
Score = 40.7 bits (94), Expect = 0.57, Method: Composition-based stats.
Identities = 39/198 (19%), Positives = 79/198 (39%), Gaps = 24/198 (12%)
Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRV-EINPETGDISLFRLLEVVEEVEN 74
++ EK+ DR V + + + I I+ G +++ +V +
Sbjct: 109 LSKEKA-DRMKVWDAIEE--------QFNRSDVIEGRIISRIKGGMTV----DVGLKAFL 155
Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134
QI L+ R D IG + + M+ R + +++V++++ R+ +
Sbjct: 156 PGSQIDLRPVR--DMDRLIGQTIQVRIIKMNKKRGNIIVSRRVLLEEWRDRRKKVTMDAL 213
Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188
K+ GEI+ G VK + +DLG DG++ + +E + GD+V +
Sbjct: 214 KE--GEILEGIVKNITDYGAFIDLGGIDGLLHITDMSWGRVTNPQEFMNVGDKVNVVVLK 271
Query: 189 VRREQRGPQVLLSRTHPQ 206
+E + L + P
Sbjct: 272 HDKETGRVSLGLKQLTPD 289
>gi|207109156|ref|ZP_03243318.1| transcription elongation factor NusA [Helicobacter pylori
HPKX_438_CA4C1]
Length = 93
Score = 40.7 bits (94), Expect = 0.58, Method: Composition-based stats.
Identities = 21/94 (22%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 23 DRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE-----VENYTC 77
++++ V+ + K A++ ++ V E + L +L+EV+E+ + + +
Sbjct: 2 PKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVEVLEDNDERLINDPSK 59
Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAV 111
ISL A++ DPS+ I +S L + + A+
Sbjct: 60 YISLSKAKEMDPSVKIKDELSYSLSLENMKQGAI 93
>gi|302348720|ref|YP_003816358.1| Putative ski2-type helicase [Acidilobus saccharovorans 345-15]
gi|302329132|gb|ADL19327.1| Putative ski2-type helicase [Acidilobus saccharovorans 345-15]
Length = 724
Score = 40.7 bits (94), Expect = 0.61, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 46/136 (33%), Gaps = 13/136 (9%)
Query: 382 ADVEELACVKISEIASIEGFDEETAVEIQGRAREY----LEGIDITLQKKIRELGVSEEL 437
+ E V ++ASI + A + A + L K E GV EL
Sbjct: 587 DKIAETYDVGPGDVASIIDTAKWIASSLAEVAPAAGLPEEVSEKLRLLSKRIEEGVKPEL 646
Query: 438 CSI---PGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTP 494
+ PG+ L G KT+E LA S +LL G L G
Sbjct: 647 LQLVEIPGVGRVRARRLYNAGFKTLESLATASPQELLRI---PGIGPATVASILEFFG-R 702
Query: 495 KDQVESMIIHARYKMG 510
K++ S+ R G
Sbjct: 703 KEEAASI--KGRGHEG 716
>gi|123456065|ref|XP_001315771.1| Type III restriction enzyme, res subunit family protein
[Trichomonas vaginalis G3]
gi|121898458|gb|EAY03548.1| Type III restriction enzyme, res subunit family protein
[Trichomonas vaginalis G3]
Length = 876
Score = 40.7 bits (94), Expect = 0.63, Method: Composition-based stats.
Identities = 33/214 (15%), Positives = 75/214 (35%), Gaps = 20/214 (9%)
Query: 288 INALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347
I+ + ++V K+ L +D+ + V PK + S + + ++ ++ ++ +
Sbjct: 635 ISKIVSSMVNKICLTDDLHILLVCCPKNENSQIL-IPKISSQIFERVIRNHLNCVMIILG 693
Query: 348 SINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADV--EELACVKISEIASIEGFDEET 405
+ + + +LL + + + + + +EIA D T
Sbjct: 694 KTKEEIEKMIVLNAAGFENKTTKEEENLLKRIYISSILCDLVNEISFTEIAEKYKIDRGT 753
Query: 406 AVEIQGRAREY--------------LEGIDITLQKKIRELGVSEELCSI---PGIDSKIK 448
+Q + L +++ +K V +EL + PG+ +
Sbjct: 754 VQSLQTSSAAVAGMATRFCESMGYSLVAAQLSIMRKRLSFCVKQELLELVSIPGVTPENA 813
Query: 449 VALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482
L +NGI E L+ S+ +L N
Sbjct: 814 RILFDNGISNAERLSTMSIGELNEIIPNVHWKKI 847
>gi|326436744|gb|EGD82314.1| hypothetical protein PTSG_02981 [Salpingoeca sp. ATCC 50818]
Length = 1435
Score = 40.4 bits (93), Expect = 0.74, Method: Composition-based stats.
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 12/71 (16%)
Query: 438 CSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQ 497
+ ++ AL E+ I T++DL V ++L L+ G +
Sbjct: 1363 LDHHSLLPQVAPALAEHDIDTLDDLVELVVGEMLTVQ------------VLTDAGVTMGK 1410
Query: 498 VESMIIHARYK 508
+I A+
Sbjct: 1411 ANKLIRLAKKH 1421
>gi|289581819|ref|YP_003480285.1| NusA family KH domain protein [Natrialba magadii ATCC 43099]
gi|289531372|gb|ADD05723.1| NusA family KH domain protein [Natrialba magadii ATCC 43099]
Length = 166
Score = 40.4 bits (93), Expect = 0.74, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR-IEVIVP 313
+G G ++ + + +V + D TFV N L PA V V + E+ V V
Sbjct: 74 IGPEGRTIKRFEDRVDL-PVRLVENAADPETFVANTLAPAAVYNVTISENNDTVAYVEVA 132
Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDI 341
+AIG G+ + A L +I
Sbjct: 133 DADRGIAIGSNGRTIEAARTLAQRHFEI 160
>gi|119872227|ref|YP_930234.1| DNA repair and recombination protein RadA [Pyrobaculum islandicum
DSM 4184]
gi|143811446|sp|Q9UWR5|RADA_PYRIL RecName: Full=DNA repair and recombination protein radA
gi|119673635|gb|ABL87891.1| DNA repair and recombination protein RadA [Pyrobaculum islandicum
DSM 4184]
Length = 330
Score = 40.4 bits (93), Expect = 0.75, Method: Composition-based stats.
Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 18/93 (19%)
Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477
+ D + + E+ ++ + G+ L E G T+ D+A SV +L
Sbjct: 5 KRKDAEVAQARVEITPDLDVEELEGVGRVTGAKLKERGFFTVRDVAFASVKELAEIVG-- 62
Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMG 510
+++ + ++ AR +G
Sbjct: 63 ----------------NEERAQQIVEAARKMLG 79
>gi|261403642|ref|YP_003247866.1| NusA family KH domain protein [Methanocaldococcus vulcanius M7]
gi|261370635|gb|ACX73384.1| NusA family KH domain protein [Methanocaldococcus vulcanius M7]
Length = 174
Score = 40.4 bits (93), Expect = 0.85, Method: Composition-based stats.
Identities = 24/132 (18%), Positives = 44/132 (33%), Gaps = 3/132 (2%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG--RI 308
VGA +G G V+ E +K+DI+ +S D F+ N P + V +
Sbjct: 44 VGAAIGKGGENVKT-AEEKFGKKVDIIEYSDDWRKFIRNIFAPIHLEDVWVKRVGKDVVA 102
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368
+ V G +G+N+ A ++ I + + + F +
Sbjct: 103 FIKVSPRSRKAIFGEKGKNLERALEILKRHTKITKIKVIVEKPKPKKRRPRRSFKEQKEE 162
Query: 369 DEIIAHLLVAEG 380
+ V
Sbjct: 163 TQENETKQVDGQ 174
>gi|322695791|gb|EFY87593.1| AAA family ATPase, putative [Metarhizium acridum CQMa 102]
Length = 2123
Score = 40.4 bits (93), Expect = 0.85, Method: Composition-based stats.
Identities = 46/297 (15%), Positives = 98/297 (32%), Gaps = 35/297 (11%)
Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV--------- 241
++ G +++ P ++ + V +G+V+ S DP R ++
Sbjct: 490 KQDDGFEIIGKNNKPMRASEILELWVQGGDSGVVRALLASMDPACRPVWSIPLCSRREFF 549
Query: 242 --FSSDSSIDPVG--ACVGMRGSRVQAVVTELRDEKIDIVVWSPDS-------ATFVINA 290
+ S D AC+ SR+Q + L +E V+ S A +
Sbjct: 550 NQWCSKVRHDQTEEFACLAEMSSRIQREIDSLYNESKRKVLQSKRIIGCTTTAAAMYQSI 609
Query: 291 LRPAIVTKVVLDE-----DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345
+ A V+++E + I + + + IG Q L ++ +T+ + E
Sbjct: 610 IESAQPDMVLVEEAGEILEAHIITALSSSVKQLVLIGDHKQ---LRPKVNNYTLTVEKGE 666
Query: 346 EDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEET 405
++N Q ++ +H E V LA + + + + + E
Sbjct: 667 GFNLNMSLFERLIHQGHSYTTLREQHRSHP---EISHFVRRLAYEHLED--NPKTLEREK 721
Query: 406 AVEIQGRAREYLEGIDITLQKKIRELGVSEELCS-IP-GIDSKIKVALGENGIKTME 460
++GR + + E + + K+ L + G K+
Sbjct: 722 VRGLKGRVIFVHHEHQEEKLADVADRRPGESKRNAFEAEMVLKMVRYLSQQGYKSKN 778
>gi|163734022|ref|ZP_02141463.1| dehydrogenase, putative [Roseobacter litoralis Och 149]
gi|161392558|gb|EDQ16886.1| dehydrogenase, putative [Roseobacter litoralis Och 149]
Length = 765
Score = 40.4 bits (93), Expect = 0.85, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 19/118 (16%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAAR-----SLYGTMSDI-RVEINPETGDISL 62
+L++A+ +A EK RD + + AAR + + V I+P+TG +S+
Sbjct: 583 MLEVAE-LAREKG--RDDL-------LSHAARATLPARSFPNGCHVSEVVIDPDTGVVSV 632
Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSID-IGGVVSDPLPPMDFGRVAVQSAKQVII 119
R VV++ N + L + IG +S+ + + G++ S +
Sbjct: 633 DRY-TVVDDFGNLINPM-LAEGQVHGGVAQGIGQAISEHVVFDEQGQLLTASFMDYAM 688
>gi|225848130|ref|YP_002728293.1| ribosomal protein S01 [Sulfurihydrogenibium azorense Az-Fu1]
gi|225644676|gb|ACN99726.1| ribosomal protein S01 [Sulfurihydrogenibium azorense Az-Fu1]
Length = 573
Score = 40.0 bits (92), Expect = 0.97, Method: Composition-based stats.
Identities = 27/147 (18%), Positives = 63/147 (42%), Gaps = 16/147 (10%)
Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134
+IS +R + + +G V + ++ K ++ K+ E + +F
Sbjct: 213 PKSEISWDKSRKVEEVLKVGDEVEVVVK-------EIKDKKPILSLKLLE---GNPWDKF 262
Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETIS------RENLRPGDRVKSYIYD 188
+G+++ +K + G ++VDLG +G I E ++NL+ GD V + I++
Sbjct: 263 DKNIGDVVEVKIKDINKGGLVVDLGLLEGFIPNSEISHFDYVKAKKNLKVGDTVVAKIFE 322
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHME 215
+ +E+ ++ + + + K
Sbjct: 323 IDKEKGKVKLSIKQAQENPLEKFLKEN 349
>gi|326436787|gb|EGD82357.1| hypothetical protein PTSG_03021 [Salpingoeca sp. ATCC 50818]
Length = 420
Score = 40.0 bits (92), Expect = 0.98, Method: Composition-based stats.
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 12/71 (16%)
Query: 438 CSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQ 497
+ ++ AL E+ I T++DL V ++L L+ G +
Sbjct: 348 LDHHSLLPQVAPALAEHDIDTLDDLVELVVGEMLTVQ------------VLTDAGVTMGK 395
Query: 498 VESMIIHARYK 508
+I A+
Sbjct: 396 ANKLIRLAKQH 406
>gi|167389716|ref|XP_001739057.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165897408|gb|EDR24579.1| hypothetical protein EDI_082040 [Entamoeba dispar SAW760]
Length = 500
Score = 40.0 bits (92), Expect = 1.0, Method: Composition-based stats.
Identities = 22/133 (16%), Positives = 49/133 (36%), Gaps = 15/133 (11%)
Query: 379 EGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL--------QKKIRE 430
E + + +++ + +I + + +Q A+EY + + +K +E
Sbjct: 298 EQITVNVKYSHARVTSLPTILVLNPGSWKALQQTAKEYEDFDWLEKNSVVLQTKEKLFKE 357
Query: 431 LGVSEELCS----IPGIDSKIKVALGENGI---KTMEDLAGCSVDDLLGWSENKGGNIEK 483
+ EL G+D K+ L EN + ++D+ ++D+L G E
Sbjct: 358 PPPNPELMQDKSKYEGLDPKLVEMLLENEVEEDLILDDMGDDTIDELDGAVEQLEQESLP 417
Query: 484 FDGFLSSLGTPKD 496
L ++
Sbjct: 418 PPLQLEQPIIDEE 430
>gi|119357530|ref|YP_912174.1| ferredoxin [Chlorobium phaeobacteroides DSM 266]
gi|119354879|gb|ABL65750.1| ferredoxin [Chlorobium phaeobacteroides DSM 266]
Length = 355
Score = 40.0 bits (92), Expect = 1.0, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 32/70 (45%), Gaps = 12/70 (17%)
Query: 436 ELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPK 495
+L ++ GI + L + G+KT++ L LL ++ KG + + +
Sbjct: 224 DLAALEGISEAQAIKLIKAGVKTLDML-------LLKGADRKGRKLLADET-----ALSE 271
Query: 496 DQVESMIIHA 505
++V +++ A
Sbjct: 272 EEVLTLVNRA 281
>gi|256811207|ref|YP_003128576.1| NusA family KH domain protein [Methanocaldococcus fervens AG86]
gi|256794407|gb|ACV25076.1| NusA family KH domain protein [Methanocaldococcus fervens AG86]
Length = 174
Score = 40.0 bits (92), Expect = 1.1, Method: Composition-based stats.
Identities = 25/132 (18%), Positives = 48/132 (36%), Gaps = 3/132 (2%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG--RI 308
VGA +G G V+ E +K+DI+ +S D F+ N P + V +
Sbjct: 44 VGAAIGKGGENVKK-AEEKFGKKVDIIEYSDDWRKFIRNIFAPIQLEDVWVKRVGKDVVA 102
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368
+ + G +G+N+ A Q+ I + N++ + + +
Sbjct: 103 FIRINPRVRRAVFGEKGKNLERALQILKRHTKITKIKVIIDNQKFKRKKARKPVNEEQQQ 162
Query: 369 DEIIAHLLVAEG 380
++ A V
Sbjct: 163 EQAEAKQEVKNE 174
>gi|332667958|ref|YP_004450746.1| hypothetical protein Halhy_6050 [Haliscomenobacter hydrossis DSM
1100]
gi|332336772|gb|AEE53873.1| hypothetical protein Halhy_6050 [Haliscomenobacter hydrossis DSM
1100]
Length = 581
Score = 40.0 bits (92), Expect = 1.1, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 404 ETAVEIQGRAREYLEGIDITLQKKIRELG---VSEELCSIPGIDSKIKVALGENGIKTME 460
+ E + + G + L I GI K++ L ENGI++ +
Sbjct: 239 DFVNEAKIEKMAAKVAELRSAGSARGGYGRIFLDNNLQLIEGIGPKVEAVLQENGIRSWD 298
Query: 461 DLAGCSVDDLLGW 473
DLAG S D+L
Sbjct: 299 DLAGKSSDELKAI 311
>gi|297583772|ref|YP_003699552.1| methyl-accepting chemotaxis sensory transducer [Bacillus
selenitireducens MLS10]
gi|297142229|gb|ADH98986.1| methyl-accepting chemotaxis sensory transducer [Bacillus
selenitireducens MLS10]
Length = 492
Score = 40.0 bits (92), Expect = 1.1, Method: Composition-based stats.
Identities = 28/162 (17%), Positives = 57/162 (35%), Gaps = 4/162 (2%)
Query: 289 NALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRR---GQNVRLASQLTGWTIDIITEE 345
N L + + G+ V+V E LA GQ R+ +LT +I E
Sbjct: 326 NLLALNASIEAARAGEHGKGFVVVADEVRKLAESSHESTGQIGRILEELTAMIQEIRLES 385
Query: 346 EDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEET 405
E + + ++ M+ + E A V E++A V+ I+ EE
Sbjct: 386 EKNYTSVSESYRTSEQAMKHFHDIEAFAETSVTHMIDLNEKVAEVE-EVFERIQSRTEEV 444
Query: 406 AVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKI 447
+ A + ++ +S ++ + + +++
Sbjct: 445 TSFTEEAAASVEAIQQLVDEQGGHMNELSRDVKDLEEMTNRL 486
>gi|332816911|ref|XP_003309859.1| PREDICTED: LOW QUALITY PROTEIN: laminin subunit beta-2-like [Pan
troglodytes]
Length = 1792
Score = 40.0 bits (92), Expect = 1.1, Method: Composition-based stats.
Identities = 28/128 (21%), Positives = 48/128 (37%), Gaps = 9/128 (7%)
Query: 406 AVEIQGRAREYLEG------IDITLQKKIRELGVS-EELCSIPGIDSKIKVALGENGI-K 457
A E Q RA+ L+ +++REL S ++ + G D + +
Sbjct: 1478 ASEAQQRAQAALDKANASRGQVEQANQELRELIQSVKDFLNQEGADPDSIEMVATRVLEL 1537
Query: 458 TMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517
++ A + L G + ++ D L+ + E ++ AR W E EK
Sbjct: 1538 SIPASAEQ-IQHLAGAIAERVRSLADVDAILARTVGDVRRAEQLLQDARRARSWAEDEKQ 1596
Query: 518 ADEEVQDA 525
E VQ A
Sbjct: 1597 KAETVQAA 1604
>gi|331248967|ref|XP_003337104.1| hypothetical protein PGTG_18200 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309316094|gb|EFP92685.1| hypothetical protein PGTG_18200 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1084
Score = 39.6 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 19/116 (16%), Positives = 39/116 (33%)
Query: 322 GRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGF 381
G + R +L ++I E E S ++ + + + + AE F
Sbjct: 74 GDEVEAERSGKELRNDDVEINEEIEQSNITADTIDQEKEKHAHQLRHALDLISAMTAEDF 133
Query: 382 ADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEEL 437
D +E + + ++ EE Q RA + + ++ E + L
Sbjct: 134 FDPKETSPHAPEDYNRMDWLYEEMDANYQERAGDTDRAGEELNEQADEEDANWDSL 189
>gi|223937467|ref|ZP_03629371.1| hypothetical protein Cflav_PD2971 [bacterium Ellin514]
gi|223893818|gb|EEF60275.1| hypothetical protein Cflav_PD2971 [bacterium Ellin514]
Length = 215
Score = 39.6 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 5/126 (3%)
Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS-RAKLAVFSSDSS 247
R Q QV LSR + +L+ + + + ++ + + DP + V S
Sbjct: 56 TERRQEQSQV-LSR---EVHKELWEPRLAVMKSNQIRTRGTALDPHWNLVLVGVDSPLPD 111
Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307
+DP+ G + VV +++D ++ ++ W PD V + LD +
Sbjct: 112 VDPLNMLFGPLQTETSHVVRQVKDCEVHVIHWHPDPKQHVRHLFEAFPQAGASLDLENKL 171
Query: 308 IEVIVP 313
+ V
Sbjct: 172 LFVEAE 177
>gi|283779540|ref|YP_003370295.1| hypothetical protein Psta_1760 [Pirellula staleyi DSM 6068]
gi|283437993|gb|ADB16435.1| hypothetical protein Psta_1760 [Pirellula staleyi DSM 6068]
Length = 775
Score = 39.6 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 35/164 (21%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 334 LTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKIS 393
L +E S K R A ++ E + L G V +L
Sbjct: 613 LLKSERSAESERPASSGSDKFKLHRKDAVKDAPSIGEKTSQRLHVVGVRTVGDLLETNPV 672
Query: 394 EIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGE 453
++AS TA I+ +E C +PGI L
Sbjct: 673 QLASKLKMSHITADTIRQWQKESTLC------------------CRMPGIAGHDAQILVA 714
Query: 454 NGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQ 497
+GI+T EDLA D++L E + E SS +++
Sbjct: 715 SGIETPEDLAELPADEVLQLIEPLIESSEGKRILRSSAPPDREE 758
>gi|15669234|ref|NP_248039.1| transcription elongation factor NusA [Methanocaldococcus jannaschii
DSM 2661]
gi|2499339|sp|Q58447|NUSA_METJA RecName: Full=NusA protein homolog
gi|1591699|gb|AAB99049.1| putative transcription termination-antitermination factor (NusA)
[Methanocaldococcus jannaschii DSM 2661]
Length = 183
Score = 39.6 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 3/117 (2%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG--RI 308
VGA +G G V+ E +K+DI+ +S D F+ N P + V +
Sbjct: 44 VGAAIGKGGENVKT-AEEKFGKKVDIIEYSDDWRKFIRNIFAPIQLDDVWVKRVGKDVVA 102
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365
+ + + G +G+N+ A ++ I + N++ + ++
Sbjct: 103 FIKINPKVRRAVFGEKGKNLERALKILKRHTKITKIKVIVENQKFKRKRAKRPVVKD 159
>gi|119703755|ref|NP_002283.3| laminin subunit beta-2 precursor [Homo sapiens]
gi|156630892|sp|P55268|LAMB2_HUMAN RecName: Full=Laminin subunit beta-2; AltName: Full=Laminin B1s
chain; AltName: Full=Laminin-11 subunit beta; AltName:
Full=Laminin-14 subunit beta; AltName: Full=Laminin-15
subunit beta; AltName: Full=Laminin-3 subunit beta;
AltName: Full=Laminin-4 subunit beta; AltName:
Full=Laminin-7 subunit beta; AltName: Full=Laminin-9
subunit beta; AltName: Full=S-laminin subunit beta;
Short=S-LAM beta; Flags: Precursor
gi|119585362|gb|EAW64958.1| laminin, beta 2 (laminin S), isoform CRA_a [Homo sapiens]
gi|119585363|gb|EAW64959.1| laminin, beta 2 (laminin S), isoform CRA_a [Homo sapiens]
gi|225000494|gb|AAI72384.1| Laminin, beta 2 (laminin S) [synthetic construct]
Length = 1798
Score = 39.6 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 9/128 (7%)
Query: 406 AVEIQGRAREYLEG------IDITLQKKIRELGVS-EELCSIPGIDSKIKVALGENGI-K 457
A E Q RA+ L+ ++++EL S ++ + G D + +
Sbjct: 1484 ASEAQQRAQAALDKANASRGQVEQANQELQELIQSVKDFLNQEGADPDSIEMVATRVLEL 1543
Query: 458 TMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517
++ A + L G + ++ D L+ + E ++ AR W E EK
Sbjct: 1544 SIPASAEQ-IQHLAGAIAERVRSLADVDAILARTVGDVRRAEQLLQDARRARSWAEDEKQ 1602
Query: 518 ADEEVQDA 525
E VQ A
Sbjct: 1603 KAETVQAA 1610
>gi|8170714|gb|AAB34682.2| laminin beta 2 chain [Homo sapiens]
Length = 1798
Score = 39.6 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 9/128 (7%)
Query: 406 AVEIQGRAREYLEG------IDITLQKKIRELGVS-EELCSIPGIDSKIKVALGENGI-K 457
A E Q RA+ L+ ++++EL S ++ + G D + +
Sbjct: 1484 ASEAQQRAQAALDKANASRGQVEQANQELQELIQSVKDFLNQEGADPDSIEMVATRVLEL 1543
Query: 458 TMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517
++ A + L G + ++ D L+ + E ++ AR W E EK
Sbjct: 1544 SIPASAEQ-IQHLAGAIAERVRSLADVDAILARTVGDVRRAEQLLQDARRARSWAEDEKQ 1602
Query: 518 ADEEVQDA 525
E VQ A
Sbjct: 1603 KAETVQAA 1610
>gi|1335202|emb|CAA56130.1| beta2/S laminin chain [Homo sapiens]
Length = 1798
Score = 39.6 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 9/128 (7%)
Query: 406 AVEIQGRAREYLEG------IDITLQKKIRELGVS-EELCSIPGIDSKIKVALGENGI-K 457
A E Q RA+ L+ ++++EL S ++ + G D + +
Sbjct: 1484 ASEAQQRAQAALDKANASRGQVEQANQELQELIQSVKDFLNQEGADPDSIEMVATRVLEL 1543
Query: 458 TMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517
++ A + L G + ++ D L+ + E ++ AR W E EK
Sbjct: 1544 SIPASAEQ-IQHLAGAIAERVRSLADVDAILARTVGDVRRAEQLLQDARRARSWAEDEKQ 1602
Query: 518 ADEEVQDA 525
E VQ A
Sbjct: 1603 KAETVQAA 1610
>gi|1103585|emb|CAA92279.1| laminin beta 2 chain [Homo sapiens]
Length = 1798
Score = 39.6 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 9/128 (7%)
Query: 406 AVEIQGRAREYLEG------IDITLQKKIRELGVS-EELCSIPGIDSKIKVALGENGI-K 457
A E Q RA+ L+ ++++EL S ++ + G D + +
Sbjct: 1484 ASEAQQRAQAALDKANASRGQVEQANQELQELIQSVKDFLNQEGADPDSIEMVATRVLEL 1543
Query: 458 TMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517
++ A + L G + ++ D L+ + E ++ AR W E EK
Sbjct: 1544 SIPASAEQ-IQHLAGAIAERVRSLADVDAILARTVGDVRRAEQLLQDARRARSWAEDEKQ 1602
Query: 518 ADEEVQDA 525
E VQ A
Sbjct: 1603 KAETVQAA 1610
>gi|167044064|gb|ABZ08749.1| putative KH domain protein [uncultured marine crenarchaeote
HF4000_APKG4H17]
Length = 154
Score = 39.6 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD---EDVGR 307
+G +G GS ++++ ++ I+++ + D F+ N L P V +V LD + +
Sbjct: 47 MGLAIGKGGSNIKSLKNIIKR-NIELIEYFDDPIKFLKNILNPKFVNEVKLDTKPDGSSQ 105
Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
+IV + L +GR G N A +I
Sbjct: 106 ATIIVDHGKKGLVVGRAGCNAEKARLFAKKYFNI 139
>gi|304312281|ref|YP_003811879.1| hypothetical protein HDN1F_26530 [gamma proteobacterium HdN1]
gi|301798014|emb|CBL46236.1| Hypothetical protein HDN1F_26530 [gamma proteobacterium HdN1]
Length = 4563
Score = 39.6 bits (91), Expect = 1.3, Method: Composition-based stats.
Identities = 25/185 (13%), Positives = 65/185 (35%), Gaps = 13/185 (7%)
Query: 324 RGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFAD 383
+G + +L S+L+ ++ +T ++ T M + V + +
Sbjct: 1793 KGLSEKLVSELSTAQVNALTSDQTQSLSATQIKGMTTEQMSKLTVADAKEFVAEQMAGFS 1852
Query: 384 VEELACVKISEI-----ASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELC 438
++L + ++ +I + + + + L + G++ +
Sbjct: 1853 ADQLNALGSDQLGGMSSDNINALSAKQVSGLTSGSIKALSTDQMAGMSDKVLAGLTSD-- 1910
Query: 439 SIPGIDSKIKVALGENGIKTMED--LAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKD 496
+I G+++ L IK + D + S D + + ++ + G D
Sbjct: 1911 NIKGLETADIAKLATGAIKGLSDKLIGDLSTDQVKAMTSDQVQQLSAK----QVQGLSTD 1966
Query: 497 QVESM 501
Q++SM
Sbjct: 1967 QIKSM 1971
Score = 36.5 bits (83), Expect = 9.7, Method: Composition-based stats.
Identities = 31/190 (16%), Positives = 61/190 (32%), Gaps = 28/190 (14%)
Query: 334 LTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKIS 393
LT I + + + + + + D++ A +L +
Sbjct: 1096 LTSDNIKGLETADLAKISTAALKGLSGAQIGQMGTDQLNALTSDQAQSLSATQLKGITTE 1155
Query: 394 EIASIEGFDEETAVEIQGRAREYLEGIDI------------TLQKKIRELGVSEELCSIP 441
+++ + D + E Q A + + + G++ + +I
Sbjct: 1156 QMSKLGTADVKDLTEKQAAALSADQLNALGTNISALTTDSVAALTATQVKGLASD--AIK 1213
Query: 442 GIDSKIKVALG--------ENGIKTME--DLAGCSVDDLLGWSENKGGNIEKFDGFLSSL 491
+ + AL + IK +E DLA S D L G S+ + K G
Sbjct: 1214 ALTTDQAAALTNTQISGLTSDNIKGLETADLAKLSTDALKGLSD----KLIKDMGTDQFN 1269
Query: 492 GTPKDQVESM 501
DQV+S+
Sbjct: 1270 ALGSDQVQSL 1279
>gi|126460634|ref|YP_001056912.1| Rad51-like protein [Pyrobaculum calidifontis JCM 11548]
gi|126250355|gb|ABO09446.1| Rad51-like protein [Pyrobaculum calidifontis JCM 11548]
Length = 314
Score = 39.6 bits (91), Expect = 1.3, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 435 EELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTP 494
+ L + G+ K L E G+ ++E LA +V++L+ ++ + +GT
Sbjct: 10 DPLEELEGVGPKTLERLRELGVTSVEHLAEFTVEELVEAGVEYDRAVKILQQAIQRVGTT 69
Query: 495 KDQVESMIIHARY 507
+ + AR
Sbjct: 70 RP------LTARE 76
>gi|289193128|ref|YP_003459069.1| NusA family KH domain protein [Methanocaldococcus sp. FS406-22]
gi|288939578|gb|ADC70333.1| NusA family KH domain protein [Methanocaldococcus sp. FS406-22]
Length = 187
Score = 39.6 bits (91), Expect = 1.4, Method: Composition-based stats.
Identities = 22/145 (15%), Positives = 50/145 (34%), Gaps = 3/145 (2%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG--RI 308
VGA +G G V+ + K+DI+ +S D F+ N P + V +
Sbjct: 44 VGAAIGKGGENVKTAEEKFGK-KVDIIEYSDDWRKFIRNIFAPIQLEDVWVKRVGKDVVA 102
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368
+ + + G +G+N+ A ++ I + N++ + +
Sbjct: 103 FIKINPKVRRAVFGEKGKNLERALKILKRHTKITKIKVIVENQRFKRRGARKPVAKEQQQ 162
Query: 369 DEIIAHLLVAEGFADVEELACVKIS 393
++ A+ +++
Sbjct: 163 EQAEKQPEAAQEVEAQQDVKETTNE 187
>gi|313888064|ref|ZP_07821742.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Peptoniphilus
harei ACS-146-V-Sch2b]
gi|312846019|gb|EFR33402.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Peptoniphilus
harei ACS-146-V-Sch2b]
Length = 696
Score = 39.2 bits (90), Expect = 1.6, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 8/117 (6%)
Query: 93 IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG 152
IG + D + + +++ ++QK + RD Y + K+ G+II GTV+R+
Sbjct: 421 IGEEFETEIIDFDKRKRRIVLSRKNVLQKELDKVRDEVYDKLKE--GDIIEGTVQRLTNF 478
Query: 153 NVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLSRT 203
VD+G DG+I E + + PGD VK + +V +E+ + L +T
Sbjct: 479 GAFVDVGGVDGLIHISELSWNRVKHPSDVVAPGDVVKVQVLNVDKEKNRIALGLKQT 535
>gi|159045090|ref|YP_001533884.1| hypothetical protein Dshi_2550 [Dinoroseobacter shibae DFL 12]
gi|157912850|gb|ABV94283.1| hypothetical protein Dshi_2550 [Dinoroseobacter shibae DFL 12]
Length = 1471
Score = 39.2 bits (90), Expect = 1.6, Method: Composition-based stats.
Identities = 33/207 (15%), Positives = 72/207 (34%), Gaps = 19/207 (9%)
Query: 266 VTELRDEKIDIVVWSPDSAT--FVINALRPAIVT---KVVLDEDVGRIEVIVPKEQLSLA 320
+ E E I++ + P A + A P+ + K+++ E G+ + + ++
Sbjct: 1252 LQEAGIENIEVRPYDPKLADRYLLDFARTPSRLDPSAKIIVYERDGKAAFVAEERITTVT 1311
Query: 321 IGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEG 380
A +LT I E S + + + + ++ V
Sbjct: 1312 --------TPAPKLTPAEEARIVELT-SRIEKAKDTSAAEEALANLKLETAKIETEVDA- 1361
Query: 381 FADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSI 440
V A + E IE +T +E + + + ++ + L + +
Sbjct: 1362 -LRVMREAEAQSLEALKIERDSLKTELEGLRSGLDAVGEMQRKMKVDVDSLRP---VTEL 1417
Query: 441 PGIDSKIKVALGENGIKTMEDLAGCSV 467
G+ ++ L G++T+ DLA S
Sbjct: 1418 EGVSREVAARLERAGVRTIGDLATAST 1444
>gi|205372598|ref|ZP_03225409.1| glutamate-1-semialdehyde aminotransferase [Bacillus coahuilensis
m4-4]
Length = 430
Score = 39.2 bits (90), Expect = 1.6, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 10/67 (14%)
Query: 18 YEKSI--DRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE-VV--EEV 72
EK I D + +V+ + I KAA + + IN G ++++ E VV E+
Sbjct: 319 KEKGIYEKLDQLGAVLEEGILKAAEKHHTP-----ITINRLKGALTVYFTKEKVVNYEQA 373
Query: 73 ENYTCQI 79
EN ++
Sbjct: 374 ENTDGEM 380
>gi|329765749|ref|ZP_08257318.1| NusA family protein [Candidatus Nitrosoarchaeum limnia SFB1]
gi|329137815|gb|EGG42082.1| NusA family protein [Candidatus Nitrosoarchaeum limnia SFB1]
Length = 154
Score = 39.2 bits (90), Expect = 1.8, Method: Composition-based stats.
Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD---E 303
+ +G +G G ++++ ++ +++V + D A F++N L +V++V L+ +
Sbjct: 43 NTGKMGLAIGKGGIHIKSLQNIVKK-TVELVEFDEDPAKFLMNLLNSKLVSEVKLNTRAD 101
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
+ V+V + + +GR G+N A L DI
Sbjct: 102 GSKQAIVMVDPRKKGIVVGREGRNAEKARLLAKRYFDI 139
>gi|110679057|ref|YP_682064.1| dehydrogenase, putative [Roseobacter denitrificans OCh 114]
gi|109455173|gb|ABG31378.1| dehydrogenase, putative [Roseobacter denitrificans OCh 114]
Length = 765
Score = 38.8 bits (89), Expect = 1.9, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 9/113 (7%)
Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI-RVEINPETGDISLFRLLE 67
+L++A+ +A EK RD +LS ++ + I V I+P+TG + + R
Sbjct: 583 MLEVAE-MAREKG--RDDLLS--HEARATLPARSFPNGCHISEVVIDPDTGVVRVDRY-T 636
Query: 68 VVEEVENYTCQISLKVARDRDPSID-IGGVVSDPLPPMDFGRVAVQSAKQVII 119
VV++ N + L + IG +S+ + + G++ S +
Sbjct: 637 VVDDFGNLINPM-LAEGQVHGGVAQGIGQAISEHVVFDEQGQLLTASFMDYAM 688
>gi|332292388|ref|YP_004430997.1| ribosomal protein L21 [Krokinobacter diaphorus 4H-3-7-5]
gi|332170474|gb|AEE19729.1| ribosomal protein L21 [Krokinobacter diaphorus 4H-3-7-5]
Length = 220
Score = 38.8 bits (89), Expect = 2.2, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482
+ ++ +++L + GI KI L E GI T A + D SE G
Sbjct: 130 APKATAKKSSKADDLKKVEGIGPKIAETLVEAGIST---FAELAKTDAAKISEIIAGVRG 186
Query: 483 KF 484
Sbjct: 187 NH 188
>gi|229816427|ref|ZP_04446728.1| hypothetical protein COLINT_03480 [Collinsella intestinalis DSM
13280]
gi|229807969|gb|EEP43770.1| hypothetical protein COLINT_03480 [Collinsella intestinalis DSM
13280]
Length = 736
Score = 38.8 bits (89), Expect = 2.3, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 54/136 (39%), Gaps = 13/136 (9%)
Query: 379 EGFADVEELACVKISEIASIEGFDEETAVEIQGR-----AREYLEGIDITLQKKIRELGV 433
E F+ +E A I ++ + A I R A + ID T K I ++G+
Sbjct: 116 ENFSSRMMTVFSSDAEHAEIVYYENQKANAIAPRVTDKAASTVRQQIDETFAKTISDVGL 175
Query: 434 SEELCSIPGIDSKIKVALGEN-------GIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486
+ + +D A N I T+ D A SVD+ G ++ G ++
Sbjct: 176 ATTSSLLEFMDGDQIAAYAGNLSGTLAGAITTLRD-ASGSVDEFAGLLQSSTGLLDSTSD 234
Query: 487 FLSSLGTPKDQVESMI 502
L+S GT E+++
Sbjct: 235 LLASAGTASKDAEALV 250
>gi|116617929|ref|YP_818300.1| glutamate synthase subunit beta [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|116096776|gb|ABJ61927.1| glutamate synthase (NADH) small subunit [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
Length = 484
Score = 38.8 bits (89), Expect = 2.3, Method: Composition-based stats.
Identities = 15/123 (12%), Positives = 42/123 (34%), Gaps = 4/123 (3%)
Query: 275 DIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLS----LAIGRRGQNVRL 330
+++ + + F+ N+ + VL + ++ K+ + +A+G G N ++
Sbjct: 362 ELIPYQTQTVEFLGNSFGEVTGVRTVLIDANKQVISNSEKDYSADLVLVAVGFTGLNTKI 421
Query: 331 ASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACV 390
+ L ++++ + D + LV + V
Sbjct: 422 LNDLDITRLNVMGTTNQENYMVAGDANTGANLVITAIHDARLVAELVDAKLQSFADRFSV 481
Query: 391 KIS 393
K++
Sbjct: 482 KVN 484
>gi|291276334|ref|YP_003516106.1| 30S ribosomal protein S1 [Helicobacter mustelae 12198]
gi|290963528|emb|CBG39359.1| 30S ribosomal protein S1 [Helicobacter mustelae 12198]
Length = 529
Score = 38.8 bits (89), Expect = 2.4, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 58/142 (40%), Gaps = 15/142 (10%)
Query: 91 IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVE 150
G ++ + R +V K + QK++E + ++I + R
Sbjct: 53 FQEGDKITVYVSRGGHDRFSVSHKKVLRHQKIQEKIQSLGED----YKDKVIEAKIIRKN 108
Query: 151 YGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVL-------LSRT 203
G VI++ + + + ++E+ G RV+ I +V+ E+ V ++R
Sbjct: 109 KGGVILEADGVEYFMPKFHASAKED--KGKRVEVCIINVKPEENSIIVSRKRFFDLVNRN 166
Query: 204 HPQFMVKLFHMEVPEIYNGIVQ 225
H + K+ ++ P +G+V+
Sbjct: 167 HSESAKKIMEIQSP--LDGVVK 186
>gi|327311698|ref|YP_004338595.1| DNA repair and recombination protein RadA [Thermoproteus uzoniensis
768-20]
gi|326948177|gb|AEA13283.1| DNA repair and recombination protein RadA [Thermoproteus uzoniensis
768-20]
Length = 337
Score = 38.8 bits (89), Expect = 2.4, Method: Composition-based stats.
Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 18/81 (22%)
Query: 430 ELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLS 489
E ++ + GI L E G T+ DLA SV ++
Sbjct: 24 EKQAELDVEELEGIGKVTGQKLKERGYYTVRDLAFASVKEIADIIG-------------- 69
Query: 490 SLGTPKDQVESMIIHARYKMG 510
+++ +I AR +G
Sbjct: 70 ----NEERAAQIIEAARSMLG 86
>gi|332796428|ref|YP_004457928.1| transcription elongation factor NusA-like protein [Acidianus
hospitalis W1]
gi|332694163|gb|AEE93630.1| transcription elongation factor NusA-like protein [Acidianus
hospitalis W1]
Length = 130
Score = 38.8 bits (89), Expect = 2.4, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 274 IDIVVWSPDSATFVINALRPAIVTKVVL--DEDVGRIEVIVPKEQLSLAIGRRGQNVRLA 331
I+IV +S + V N + PA V V + ++ + + V + +AIG+ G+NV A
Sbjct: 55 IEIVAYSDNLEDMVKNLMSPARVRSVKVIDNDSKKTVYITVDPQDKGIAIGKSGKNVVRA 114
Query: 332 SQLTGWTIDI 341
+ +DI
Sbjct: 115 KLILKRYMDI 124
>gi|124486202|ref|YP_001030818.1| hypothetical protein Mlab_1385 [Methanocorpusculum labreanum Z]
gi|124363743|gb|ABN07551.1| NusA family KH domain protein [Methanocorpusculum labreanum Z]
Length = 151
Score = 38.4 bits (88), Expect = 2.5, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEV 310
+G +G G ++ + L +I++V + D F+ N +PA V V + +
Sbjct: 48 MGIAIGKGGDNIKKMSRVLGK-RIEMVEFDEDREVFIANMFKPAEVASVSYGGRDEPVMI 106
Query: 311 IVPKE-QLSLAIGRRGQNVRLASQL 334
VP+ LAIG+ G + A L
Sbjct: 107 TVPERGDFGLAIGKGGSTIEKARIL 131
>gi|229829150|ref|ZP_04455219.1| hypothetical protein GCWU000342_01235 [Shuttleworthia satelles DSM
14600]
gi|229792313|gb|EEP28427.1| hypothetical protein GCWU000342_01235 [Shuttleworthia satelles DSM
14600]
Length = 368
Score = 38.4 bits (88), Expect = 2.6, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 12/129 (9%)
Query: 81 LKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGE 140
+ +RD + +G + + + R + +++I+ + + + + K VG+
Sbjct: 135 VSDRYERDLNKYLGQEIEFKITEFNPRRRRIIGNRKMILVERKSEIQKDLLEKLK--VGD 192
Query: 141 IISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQR 194
II GT+K + VDLG DG++ E R+ D+V+ +I ++
Sbjct: 193 IIEGTIKNITDFGAFVDLGGIDGLLHISEMSWGRVENPRKVFNVDDKVRVFIKEIN---- 248
Query: 195 GPQVLLSRT 203
G ++ LSR
Sbjct: 249 GTKIALSRK 257
>gi|227499452|ref|ZP_03929563.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
tetradius ATCC 35098]
gi|227218514|gb|EEI83757.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
tetradius ATCC 35098]
Length = 687
Score = 38.4 bits (88), Expect = 2.7, Method: Composition-based stats.
Identities = 32/212 (15%), Positives = 83/212 (39%), Gaps = 19/212 (8%)
Query: 24 RDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKV 83
++ ++ + DS++K + I V+ + +F ++ + +++ +
Sbjct: 279 KEEFMNSLEDSLKKIYPKEIVKGTVIDVKDD------EVFVDIQFRADGIIKLDEMTEEE 332
Query: 84 ARDRDPSIDIGGVVS-DPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEII 142
A+D S ++G + + D S ++V KV + + + E++
Sbjct: 333 AKDPKNSFNVGDEIDVFVIKLDDGEGNVALSTRRVEGMKVWQELAQKAEND------ELV 386
Query: 143 SGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR---REQRGPQVL 199
G V G + V++ +G + I+ ++ + +D++ ++R +++
Sbjct: 387 HGEVVSFNKGGLTVNVNGVNGFVPAS-QIATYFVKNFKKFVGEQWDLKIISIDERKNRLV 445
Query: 200 LSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSR 231
LSR + + E+ G V V+R
Sbjct: 446 LSRKD--VVEEELDNLWDELEEGQVVKGKVAR 475
>gi|330752238|emb|CBL87195.1| ribosomal protein S1 [uncultured Sphingobacteria bacterium]
gi|330752261|emb|CBL87217.1| ribosomal protein S1 [uncultured Sphingobacteria bacterium]
Length = 740
Score = 38.4 bits (88), Expect = 2.7, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
Query: 399 EGFDEETAVEIQGRAREYLEGIDITLQKKI--RELGVSEELCSIPGIDSKIKVALGENGI 456
+ + + + +A+ T K + + G ++L I GI KI L NGI
Sbjct: 621 QQMEADNPAPAKSKAKVESSVKVETKSKSLAKKAEGKPDDLKKIEGIGPKIAELLTTNGI 680
Query: 457 KTMEDLAGCSVDDLLGWSENKGGNIEKFD 485
+ E LA V+++ G + D
Sbjct: 681 PSFEALASTEVEEIKEILAEAGSRYKTRD 709
>gi|73669895|ref|YP_305910.1| DNA topoisomerase I [Methanosarcina barkeri str. Fusaro]
gi|72397057|gb|AAZ71330.1| DNA topoisomerase I [Methanosarcina barkeri str. Fusaro]
Length = 771
Score = 38.4 bits (88), Expect = 2.8, Method: Composition-based stats.
Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 415 EYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471
E+ + ++ ++ + + + G+ L E GI ++E LA +L
Sbjct: 672 EWQKTQQEEQAQQPKKEKP-KSIKDLEGVGKATAGKLEEAGITSVEALAEADPVELA 727
>gi|330752193|emb|CBL87151.1| ribosomal protein S1 [uncultured Sphingobacteria bacterium]
Length = 740
Score = 38.4 bits (88), Expect = 2.8, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
Query: 399 EGFDEETAVEIQGRAREYLEGIDITLQKKI--RELGVSEELCSIPGIDSKIKVALGENGI 456
+ + + + +A+ T K + + G ++L I GI KI L NGI
Sbjct: 621 QQMEADNPAPAKSKAKVESSVKVETKSKSLAKKAEGKPDDLKKIEGIGPKIAELLTTNGI 680
Query: 457 KTMEDLAGCSVDDLLGWSENKGGNIEKFD 485
+ E LA V+++ G + D
Sbjct: 681 PSFEALASTEVEEIKEILAEAGSRYKTRD 709
>gi|297491200|ref|XP_002707836.1| PREDICTED: FAT tumor suppressor homolog 1-like [Bos taurus]
gi|296472443|gb|DAA14558.1| FAT tumor suppressor homolog 1-like [Bos taurus]
Length = 4588
Score = 38.4 bits (88), Expect = 2.8, Method: Composition-based stats.
Identities = 40/235 (17%), Positives = 80/235 (34%), Gaps = 33/235 (14%)
Query: 2 VSANRLELLQ---IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETG 58
+ N E LQ + V+ +K I+ +++ +A G +R I +T
Sbjct: 815 ANDNPPEFLQESYFVE-VSEDKEINSEIIQ-------VEATDKDLGPNGHVRYSILTDTD 866
Query: 59 DISLFRLLEVVE-----EVENYTCQISLKVARDRD-PSIDIGGVVSDPLPPMDFGRVAVQ 112
S+ + VV+ + E ARD+ + V + D +
Sbjct: 867 KFSIDSVTGVVKILNPLDREEQQVHYLKVEARDQAREEPQLLSTVILKVSLDDVNDNPPK 926
Query: 113 SAKQVIIQKVREAERDRQYLEFKDKV----GEIISGTVKRVEYGNVIVDLGNSDGVIRRD 168
KVRE + + + + G+ +++G D+ G +R
Sbjct: 927 FIPPNYRVKVREDLPEGTIIMWLEAHDPDLGQSSQVRYSLLDHGEGNFDVDKLSGAVRII 986
Query: 169 ETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGI 223
+ + E + + Y VR + +G + LS T +EV ++ +
Sbjct: 987 QQLDFE------KKQVYNLTVRAKDKGKPISLSSTCY------VEVEVIDVNENL 1029
>gi|148642966|ref|YP_001273479.1| transcription elongation factor NusA-like protein
[Methanobrevibacter smithii ATCC 35061]
gi|148551983|gb|ABQ87111.1| transcription termination factor, NusA [Methanobrevibacter smithii
ATCC 35061]
Length = 143
Score = 38.4 bits (88), Expect = 2.9, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 251 VGACVGMRGSRVQAVVTELRDEK-IDIVVWSPDSATFVINALRPAIVTKVVLDED---VG 306
+G +G GS V V + +K I+IV S DS F+ N L PA V V + +
Sbjct: 45 MGLAIGKGGSTVSKVQRAV--DKGIEIVELSDDSIQFIKNLLSPAEVQGVKVLQKESGEK 102
Query: 307 RIEVIVPKEQLSLAIGRRGQNV 328
V +AIG+ G N+
Sbjct: 103 IATVTADNTNKRIAIGKNGVNI 124
>gi|297619549|ref|YP_003707654.1| NusA family KH domain-containing protein [Methanococcus voltae A3]
gi|297378526|gb|ADI36681.1| NusA family KH domain protein [Methanococcus voltae A3]
Length = 189
Score = 38.4 bits (88), Expect = 3.1, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 7/94 (7%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV--TKVVLDEDVGRI 308
+GA +G G V+ + KID++ +S D F+ N P + D +
Sbjct: 43 IGAAIGKGGENVRNATEKFGR-KIDLIEYSDDVKQFIRNIFAPVELEDVWTKKFGDDLVV 101
Query: 309 EVIVPKEQLSLAIGRRG----QNVRLASQLTGWT 338
+ + + IG +G V L S+L+G
Sbjct: 102 YLRIHPKLRRAIIGDKGKKIDSAVDLVSRLSGVK 135
>gi|300765878|ref|ZP_07075852.1| phage tail tape measure protein [Listeria monocytogenes FSL N1-017]
gi|300513455|gb|EFK40528.1| phage tail tape measure protein [Listeria monocytogenes FSL N1-017]
Length = 1678
Score = 38.1 bits (87), Expect = 3.3, Method: Composition-based stats.
Identities = 22/167 (13%), Positives = 56/167 (33%), Gaps = 9/167 (5%)
Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
++ + +A G ++V A + T I + + N ++
Sbjct: 798 VNATDKKSAKANNDWDRLVASGAVSKDVASAKKHTNNETASINKADIKKNTEELKRLEKS 857
Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
F + ++E A ++ ++ + E A IE +++ IQ Y +
Sbjct: 858 RFEEQRKIEENAAGAILKIKENAKKKGVKLSKEEKAEIEQINKDKVTAIQVSESTYSKKS 917
Query: 421 DITLQKKIRELGVSEE---------LCSIPGIDSKIKVALGENGIKT 458
+K+ +E ++ L ++ S++ + +K
Sbjct: 918 AEIQKKQRKEATIALSKSAKEQKIILGNLENSKSEMSAKAAASVVKN 964
>gi|330752286|emb|CBL87241.1| ribosomal protein S1 [uncultured Sphingobacteria bacterium]
Length = 740
Score = 38.1 bits (87), Expect = 3.5, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 31/84 (36%)
Query: 402 DEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMED 461
D + + + ++ + + G ++L I GI KI L NGI T E
Sbjct: 626 DNSVPAKAKVKVESSVKVETKSKSLAKKAEGKPDDLKKIEGIGPKIAELLTTNGISTFEA 685
Query: 462 LAGCSVDDLLGWSENKGGNIEKFD 485
LA VD + G + D
Sbjct: 686 LASTEVDKIKEILAEAGSRYKTRD 709
>gi|154151638|ref|YP_001405256.1| DNA repair and recombination protein RadA [Candidatus Methanoregula
boonei 6A8]
gi|154000190|gb|ABS56613.1| DNA repair and recombination protein RadA [Methanoregula boonei
6A8]
Length = 325
Score = 38.1 bits (87), Expect = 3.6, Method: Composition-based stats.
Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 17/74 (22%)
Query: 436 ELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPK 495
E+ +PG+ L E G ++E +A S +L +E +
Sbjct: 7 EIEDLPGVGPSTADKLREAGYLSVESIATASPAELSEITE-----------------ISE 49
Query: 496 DQVESMIIHARYKM 509
+ +I AR
Sbjct: 50 STAKKIIKAARESA 63
>gi|170290825|ref|YP_001737641.1| DNA repair and recombination protein RadA [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170174905|gb|ACB07958.1| DNA repair and recombination protein RadA [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 336
Score = 38.1 bits (87), Expect = 3.6, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 17/74 (22%)
Query: 436 ELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPK 495
+L + G+ L E G ++E +A + +L ++ G +
Sbjct: 28 DLTELEGVGPATAKRLAEAGFTSLESIAMSTPSELAVYA-----------------GISE 70
Query: 496 DQVESMIIHARYKM 509
+ +I AR K+
Sbjct: 71 AVAQKIIQAARSKL 84
>gi|222478542|ref|YP_002564779.1| NusA family KH domain protein [Halorubrum lacusprofundi ATCC 49239]
gi|222451444|gb|ACM55709.1| NusA family KH domain protein [Halorubrum lacusprofundi ATCC 49239]
Length = 139
Score = 38.1 bits (87), Expect = 4.0, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV-GRIE 309
+ A +G G V+ L I++V + FV +AL PA V V + E
Sbjct: 43 MAAAIGQAGETVEEAERRLAK-SIELVEDADTPEAFVASALAPAAVNAVTISEQNDRVAY 101
Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
V VP+ +AIG G N+ A L DI
Sbjct: 102 VEVPEPDRGVAIGADGANIETARTLAKRHYDI 133
>gi|328869849|gb|EGG18224.1| small MutS related family protein [Dictyostelium fasciculatum]
Length = 329
Score = 38.1 bits (87), Expect = 4.0, Method: Composition-based stats.
Identities = 32/205 (15%), Positives = 69/205 (33%), Gaps = 40/205 (19%)
Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTG-----------------------WTIDIITEE 345
V+V +E IG +G V+ TG I +I +
Sbjct: 89 TVVVDRELHKYIIGTKGATVKDIKDKTGATAIDLPDSGDKVSVSGTPDACDRAIAMINDI 148
Query: 346 EDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACV----KISEIASIEGF 401
+ Q ++ + + L + A+V++LA A+ E
Sbjct: 149 KGQHKTQSQKDQDHKDLKDEHEKESQRTDALYKKYQAEVDKLADERTKLNAEADAAFESG 208
Query: 402 DEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMED 461
D+ E++ RA++ ++ +K RE+ +++ ++ + +G+KT +
Sbjct: 209 DKGKGHELKERAKQLTVQMEQANKKASREI-FADKNKNLDKFTVDL------HGLKTKDA 261
Query: 462 LAGCSVDDLLGWSENKGGNIEKFDG 486
L +L+ + G
Sbjct: 262 L------ELMDERMEELKKDSSNKG 280
>gi|171689886|ref|XP_001909882.1| hypothetical protein [Podospora anserina S mat+]
gi|170944905|emb|CAP71016.1| unnamed protein product [Podospora anserina S mat+]
Length = 1341
Score = 38.1 bits (87), Expect = 4.0, Method: Composition-based stats.
Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 12/105 (11%)
Query: 399 EGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKT 458
+ E E R R+ + + L+ +I+ G+ E+L + + T
Sbjct: 462 MERNNERLKEALIRLRDLSQEQEEELKDQIK--GLEEDLREFETMKEQFAA--------T 511
Query: 459 MEDLA--GCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESM 501
E LA +V+DL N G + + ++++ +
Sbjct: 512 KEKLAQAEVAVEDLREQLNNALGAEDLIEKITEENMNQAEEIKEL 556
>gi|222481049|ref|YP_002567286.1| DNA ligase, NAD-dependent [Halorubrum lacusprofundi ATCC 49239]
gi|254781342|sp|B9LU22|DNLJ_HALLT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|222453951|gb|ACM58216.1| DNA ligase, NAD-dependent [Halorubrum lacusprofundi ATCC 49239]
Length = 710
Score = 38.1 bits (87), Expect = 4.2, Method: Composition-based stats.
Identities = 21/112 (18%), Positives = 34/112 (30%), Gaps = 9/112 (8%)
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENG-IKTMEDLAGCSVDDLL---GWSENKG 478
++ E + I G+ + L E G ++++ DL +VDDL GW E
Sbjct: 468 AQLERAVEHWARRDALDIEGLGPERVQQLREAGLVESLPDLYDLAVDDLAALEGWGETSA 527
Query: 479 GNIEKFDGFLSSLGTPKDQVESMI-----IHARYKMGWIEKEKVADEEVQDA 525
N+ I AR + +DA
Sbjct: 528 ENLIAELAATRDPPLDDFLAGLGIPDVGATTARALAAHFGDLDAILDADEDA 579
>gi|257456491|ref|ZP_05621687.1| cytidylate kinase/ribosomal protein S1 [Treponema vincentii ATCC
35580]
gi|257446151|gb|EEV21198.1| cytidylate kinase/ribosomal protein S1 [Treponema vincentii ATCC
35580]
Length = 801
Score = 37.7 bits (86), Expect = 4.4, Method: Composition-based stats.
Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 7/133 (5%)
Query: 79 ISLKVARDRD-PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137
IS A+ D P +G S + M F R + V +K E ++ F +
Sbjct: 369 ISQAAAQKVDKPESLLGQKGSFYIEKMVFDRKGNRDNIVVNRRKYLEDTVEKNREAFFEN 428
Query: 138 V--GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK----SYIYDVRR 191
G+++ G VK +DLG DG++ ++ RP D VK + +R
Sbjct: 429 TNIGDVVKGAVKSFTSFGAFIDLGGFDGLLHINDMSWGHVTRPKDFVKKGQEIDLKVIRL 488
Query: 192 EQRGPQVLLSRTH 204
+ ++ LS H
Sbjct: 489 DPAEKRINLSLKH 501
>gi|256420494|ref|YP_003121147.1| beta-ketoacyl synthase [Chitinophaga pinensis DSM 2588]
gi|256035402|gb|ACU58946.1| Beta-ketoacyl synthase [Chitinophaga pinensis DSM 2588]
Length = 1413
Score = 37.7 bits (86), Expect = 4.4, Method: Composition-based stats.
Identities = 26/192 (13%), Positives = 57/192 (29%), Gaps = 23/192 (11%)
Query: 273 KIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLAS 332
KI V++ D + + D + I+ ++ + AI R QN RL
Sbjct: 1131 KIQEVLFYEDMED--QQGVFECTCQLTEMTADTATADFILRRDNRTWAIIRGWQNARL-- 1186
Query: 333 QLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKI 392
I E ++ N ++ I + +V+ F +
Sbjct: 1187 --------EIDEPLWKVSMSPLHNSLSEEIAPGIFLFRNSYQRVVSWDFIMKRYFNQAEK 1238
Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIR-----ELGVSEELCSIP----GI 443
+++ ++ + I R + Q+K E + + P +
Sbjct: 1239 ADLRAM--LPNKRKERIISRVAAKDAVRALLKQEKQEAYYPIEFEIRNDALGKPFPEGSM 1296
Query: 444 DSKIKVALGENG 455
+ ++L
Sbjct: 1297 TKDLHISLAHKD 1308
>gi|157114471|ref|XP_001652287.1| igf2 mRNA binding protein, putative [Aedes aegypti]
gi|108877277|gb|EAT41502.1| igf2 mRNA binding protein, putative [Aedes aegypti]
Length = 541
Score = 37.7 bits (86), Expect = 4.4, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 20/113 (17%)
Query: 249 DPVGACVGMRGSRVQAVVT-----------------ELRDEKIDIVVWSPD---SATFVI 288
+ VGA +G +GS ++ ++ E + E+ +V +P+ A ++I
Sbjct: 354 NAVGAIIGTKGSHIRNIIRFSGASVKIAPLEADKPLEQQTERKVTIVGTPEAQWKAQYLI 413
Query: 289 NALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
D+ +E++VP Q+ IG+ GQNVR ++TG I +
Sbjct: 414 FEKMREEGFVSGTDDVRLTVEILVPSAQVGRIIGKGGQNVRELQRVTGSIIKL 466
>gi|209732042|gb|ACI66890.1| Mitochondrial 28S ribosomal protein S28 [Salmo salar]
Length = 192
Score = 37.7 bits (86), Expect = 4.5, Method: Composition-based stats.
Identities = 17/98 (17%), Positives = 38/98 (38%), Gaps = 3/98 (3%)
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
R+ ++ +++ G V R+ ++ +D G + + T+ E + G RV+ +
Sbjct: 95 RNSPLMQMGPAKDKMVIGKVFRIIKDDLYIDFGAKFHCVCKRPTVDGEKYQRGSRVRLRL 154
Query: 187 YDVRREQRGPQVLLSRT---HPQFMVKLFHMEVPEIYN 221
D+ R T F++ L + +I
Sbjct: 155 EDLELTSRFLGANTDTTLLEADAFLLGLIESKDAKIKE 192
>gi|329765876|ref|ZP_08257442.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|329137719|gb|EGG41989.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 709
Score = 37.7 bits (86), Expect = 4.6, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 3/89 (3%)
Query: 406 AVEIQGRAREYLEGIDITLQKKIRELGVSEELCSI---PGIDSKIKVALGENGIKTMEDL 462
EI ++ ++ G+ EEL + GI L ++GIKT++DL
Sbjct: 619 LREISKHVERIDLLDELDNLRRRITYGIREELLDLVKVKGIGRIRARMLYKHGIKTLDDL 678
Query: 463 AGCSVDDLLGWSENKGGNIEKFDGFLSSL 491
A V+ L + + L +
Sbjct: 679 ANIPVNKLAEIDKIGSTIADNIKSELRKV 707
>gi|126179861|ref|YP_001047826.1| DNA repair and recombination protein RadA [Methanoculleus
marisnigri JR1]
gi|166218763|sp|A3CWU4|RADA_METMJ RecName: Full=DNA repair and recombination protein radA
gi|125862655|gb|ABN57844.1| DNA repair and recombination protein RadA [Methanoculleus
marisnigri JR1]
Length = 324
Score = 37.7 bits (86), Expect = 4.8, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 17/74 (22%)
Query: 436 ELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPK 495
+L +PG+ + L E G T+E +A + DL +E +
Sbjct: 5 DLEDLPGVGATTAEKLREAGYGTVESVATATTSDLAEAAE-----------------IGE 47
Query: 496 DQVESMIIHARYKM 509
+ +I+ AR
Sbjct: 48 ATAKKVILAARKMA 61
>gi|15822703|gb|AAL07518.1| RNA-binding protein precursor [Nicotiana tabacum]
Length = 277
Score = 37.7 bits (86), Expect = 4.8, Method: Composition-based stats.
Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
Query: 3 SANRLELLQIADAVAYEK----SIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETG 58
SA+ L Q +++ K + S + ++ S YG + + RV ++ +TG
Sbjct: 24 SASNASLFQAIRSMSSSKLFVGGLSYGTDESSLKEAF-----SQYGDVIEARVIMDRDTG 78
>gi|21229178|ref|NP_635100.1| DNA topoisomerase I [Methanosarcina mazei Go1]
gi|20907743|gb|AAM32772.1| DNA topoisomerase I [Methanosarcina mazei Go1]
Length = 752
Score = 37.7 bits (86), Expect = 5.0, Method: Composition-based stats.
Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 415 EYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471
E+ + ++ ++ + + + G+ L E GI ++E LA +L
Sbjct: 672 EWQKTQKEEQAQQPKKEKP-KSIKDLEGVGKATAGKLEEAGITSVEALAEADPVELA 727
>gi|21227760|ref|NP_633682.1| methyl-accepting chemotaxis protein [Methanosarcina mazei Go1]
gi|20906162|gb|AAM31354.1| methyl-accepting chemotaxis protein [Methanosarcina mazei Go1]
Length = 665
Score = 37.7 bits (86), Expect = 5.0, Method: Composition-based stats.
Identities = 32/168 (19%), Positives = 57/168 (33%), Gaps = 2/168 (1%)
Query: 289 NALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
N L + + GR +V E LA R + +T + +
Sbjct: 469 NLLALNAAIEAARAGEYGRGFAVVADEVRKLAADSRKSTDEINEIVTNVQKETRKVTDAI 528
Query: 349 INRQKDFNERTQFFMQAINVDEIIAHLLVAEGF--ADVEELACVKISEIASIEGFDEETA 406
++ QA+N I + F A+++ LA + +I +IE ETA
Sbjct: 529 NTADSQAKNGSKNIKQALNKSHEIVDAVATINFMLAELDRLAEEGLIKIENIEKSISETA 588
Query: 407 VEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGEN 454
+ A E ++ VS + ++ G+ + L EN
Sbjct: 589 STAEENAASSEETSAAIEEQTAAMQQVSTSVQNVSGLARRTVDTLFEN 636
>gi|313127538|ref|YP_004037808.1| nusa family kh domain protein [Halogeometricum borinquense DSM
11551]
gi|312293903|gb|ADQ68363.1| NusA family KH domain protein [Halogeometricum borinquense DSM
11551]
Length = 139
Score = 37.7 bits (86), Expect = 5.0, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE-DVGRIEVIVP 313
+G RG V AV ++ +++V + + FV + L PA V V + E D V V
Sbjct: 47 IGPRGQHVHAVEEKIGR-SVELVEDADTTEAFVESMLAPAAVRHVTISEQDDRVAYVEVE 105
Query: 314 KEQLSLAIGRRGQNVRLASQLTGWT 338
+AIG+ G+N+ A L
Sbjct: 106 NADRGVAIGKEGRNIETARTLAERH 130
>gi|167390223|ref|XP_001739253.1| coatomer beta subunit [Entamoeba dispar SAW760]
gi|165897104|gb|EDR24370.1| coatomer beta subunit, putative [Entamoeba dispar SAW760]
Length = 910
Score = 37.7 bits (86), Expect = 5.1, Method: Composition-based stats.
Identities = 13/97 (13%), Positives = 39/97 (40%), Gaps = 2/97 (2%)
Query: 55 PETGDISLFRLLEVVEEVENYTCQ--ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQ 112
G+I E+ ++ + + I+L+ ++ + ++I V+ + L + + A++
Sbjct: 342 RNAGEIVTALRKEIGKDDNEFVVEVLIALRKCKEINEGVEIDDVMFEALTTPELAKEAIE 401
Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRV 149
+ + + RE +R ++ V +
Sbjct: 402 YIEYRLQGEQRENTVERLIDFIEEVSDNKTLRNVIWM 438
>gi|307189125|gb|EFN73581.1| Insulin-like growth factor 2 mRNA-binding protein 1 [Camponotus
floridanus]
Length = 587
Score = 37.7 bits (86), Expect = 5.3, Method: Composition-based stats.
Identities = 28/149 (18%), Positives = 61/149 (40%), Gaps = 20/149 (13%)
Query: 249 DPVGACVGMRGSRVQAVVT-----------------ELRDEKIDIVVWSPD---SATFVI 288
+ VGA +G +GS ++ ++ E + E+ ++ SP+ A ++I
Sbjct: 374 NSVGAIIGTKGSHIRNIIRFSGASVKIAPLEQDKPAEQQTERKVTIIGSPESQWKAQYLI 433
Query: 289 NALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
++ IE++VP Q+ IG+ GQNVR ++TG I + ++
Sbjct: 434 FEKMREEGYVAGTEDVRLTIEILVPSTQVGRIIGKGGQNVRELQRVTGSVIKLSEQQATP 493
Query: 349 INRQKDFNERTQFFMQAINVDEIIAHLLV 377
+ +++ ++ + +V
Sbjct: 494 PSAEEETTVHIIGPFFSVQSAQRRIRAMV 522
>gi|170036665|ref|XP_001846183.1| igf2 mRNA binding protein [Culex quinquefasciatus]
gi|167879496|gb|EDS42879.1| igf2 mRNA binding protein [Culex quinquefasciatus]
Length = 520
Score = 37.7 bits (86), Expect = 5.3, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 20/113 (17%)
Query: 249 DPVGACVGMRGSRVQAVVT-----------------ELRDEKIDIVVWSPD---SATFVI 288
+ VGA +G +GS ++ ++ E + E+ +V +P+ A ++I
Sbjct: 353 NAVGAIIGTKGSHIRNIIRFSGASVKIAPLEADKPLEQQTERKVTIVGTPEAQWKAQYLI 412
Query: 289 NALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341
D+ +E++VP Q+ IG+ GQNVR ++TG I +
Sbjct: 413 FEKMREEGFVSGTDDVRLTVEILVPSAQVGRIIGKGGQNVRELQRVTGSIIKL 465
>gi|91774093|ref|YP_566785.1| DNA-directed DNA polymerase [Methanococcoides burtonii DSM 6242]
gi|91713108|gb|ABE53035.1| UmuC like DNA polymerase [Methanococcoides burtonii DSM 6242]
Length = 364
Score = 37.7 bits (86), Expect = 5.3, Method: Composition-based stats.
Identities = 36/212 (16%), Positives = 59/212 (27%), Gaps = 22/212 (10%)
Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
+ G I RLA + D + + +
Sbjct: 40 EEGGAVSTCNYVARDAGI-HSAMPCRLAKAV---KPDAVFLPVRKTFYSEVSERIMEIIR 95
Query: 364 QAINVDEIIAHLL-VAEGFADVEELACVKISEIASIEGFDEETAVEI------------Q 410
+ D + L + E F +V + I + I ++ E+ +
Sbjct: 96 SYADNDGELFEKLGIDEAFLEVTATSRGDIDKAQQIAQSIKDDVKELEGLTCSVGIGPNK 155
Query: 411 GRAREYLEGIDITLQKKIRELGVSEELCSIP-----GIDSKIKVALGENGIKTMEDLAGC 465
A+ IRE V L +P GI + L GI +EDLAG
Sbjct: 156 IIAKMASSRQKPDGITVIREDEVDGFLRKMPVAKLWGIGKVTEEKLANMGIDIVEDLAGH 215
Query: 466 SVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQ 497
V +L+ G K K++
Sbjct: 216 DVQELISAFGKTRGTWLKMAASGIDDDPVKEK 247
>gi|284165727|ref|YP_003404006.1| poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit
[Haloterrigena turkmenica DSM 5511]
gi|284015382|gb|ADB61333.1| poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit
[Haloterrigena turkmenica DSM 5511]
Length = 530
Score = 37.7 bits (86), Expect = 5.3, Method: Composition-based stats.
Identities = 19/119 (15%), Positives = 38/119 (31%), Gaps = 14/119 (11%)
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY------LEGI 420
D L + + + + S+ + DEE + +E +
Sbjct: 392 PEDLADGSGLETDAESSTQAELDAETSDRHGEDRSDEEIVERGEDDVQEEPAEPGEMNVD 451
Query: 421 DITLQKKIRE--------LGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471
+++ E +++L + G+ L E GI+T E L V +L
Sbjct: 452 ADVVEEVTDEDVDAGSAIESETDDLTDLDGVGQAYADTLAEAGIETFEQLVDADVAELA 510
>gi|325286743|ref|YP_004262533.1| 30S ribosomal protein S2 [Cellulophaga lytica DSM 7489]
gi|324322197|gb|ADY29662.1| ribosomal protein S2 [Cellulophaga lytica DSM 7489]
Length = 340
Score = 37.7 bits (86), Expect = 5.4, Method: Composition-based stats.
Identities = 29/148 (19%), Positives = 46/148 (31%)
Query: 331 ASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACV 390
++L G + T E ++ F M N D ++ + + V
Sbjct: 155 MTRLPGALFIVDTMREHIAVKEALKLNIPIFAMVDTNSDPRPIDYIIPSNDDASKSIEAV 214
Query: 391 KISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVA 450
+I + + Q K +++L + GI KI
Sbjct: 215 LSHVSEAIIEGLADRKSDKQAEKEGKDSTPKAKAAPKAEAKTATDDLTKVEGIGPKIAEI 274
Query: 451 LGENGIKTMEDLAGCSVDDLLGWSENKG 478
GIKT DLA SV+DL G
Sbjct: 275 FQNEGIKTYADLAAKSVEDLSAILTAAG 302
>gi|257388970|ref|YP_003178743.1| hypothetical protein Hmuk_2931 [Halomicrobium mukohataei DSM 12286]
gi|257171277|gb|ACV49036.1| conserved hypothetical protein [Halomicrobium mukohataei DSM 12286]
Length = 157
Score = 37.7 bits (86), Expect = 5.6, Method: Composition-based stats.
Identities = 21/119 (17%), Positives = 38/119 (31%), Gaps = 10/119 (8%)
Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ- 425
+ V + E A S +D +TA E + + + D +
Sbjct: 23 GNTPQDVDVTVEREPSTESEDAVKGTETDTSGATYDADTATESESASEQADADTDDESET 82
Query: 426 -------KKIRELGVSEE--LCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSE 475
+ E V + + I G+ L GI T+ +LA D+L ++
Sbjct: 83 TVAAATPEPTDEPSVDNDAPVTEIKGVGPAYAERLENAGISTVSELAAADADELGEVTD 141
>gi|168007773|ref|XP_001756582.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692178|gb|EDQ78536.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1158
Score = 37.3 bits (85), Expect = 5.8, Method: Composition-based stats.
Identities = 46/284 (16%), Positives = 94/284 (33%), Gaps = 22/284 (7%)
Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEV 310
+ A + R +R+Q++ L +K I+ D V +L L+ + G + V
Sbjct: 495 LEAALADREARIQSLEKGLNGKKKFIIEMENDFKE-VRKSLFVMEGRVKDLEANEGALHV 553
Query: 311 IVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDE 370
+ ++ L RG RL + +E + Q E Q + ++
Sbjct: 554 NMKDKEQEL----RGLFQRLEKMQSDCAAKDGKIKELQSSLQDAKRENQQLKAWRVEHEQ 609
Query: 371 II------AHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424
L ++ ++ + ++ E+T IQ +++ + +
Sbjct: 610 QREAQAVAMDQLNSKVLELTTANGQLESKKQQMMKQVKEQT-QRIQDLSQQASKQEQLVA 668
Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLA---GCSVDDLLGWSENKGGNI 481
K++ G+ +L K+ E I M++L +L E
Sbjct: 669 AKELEAQGLQNQLRGEQEKTLKLSEE-VEEKISQMDELIVYVEQLEQELAALQERVRSTE 727
Query: 482 EKFDGFLSSLGTPKD------QVESMIIHARYKMGWIEKEKVAD 519
L + + +VE + AR + W K K+ D
Sbjct: 728 SDEHEQLKLHCSTLEEKIESHEVEMQNLRARLREEWETKSKLND 771
>gi|221058871|ref|XP_002260081.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
gi|193810154|emb|CAQ41348.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
Length = 703
Score = 37.3 bits (85), Expect = 5.9, Method: Composition-based stats.
Identities = 15/93 (16%), Positives = 35/93 (37%), Gaps = 1/93 (1%)
Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR-AREYLEGIDI 422
++++ + +LL E + +++ EI+ A E
Sbjct: 398 DNNDMEKALPNLLFNENCESCRMNRAYSRRSLQKESRHEKKETEEIRNNVAEEEDLMKTY 457
Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENG 455
++K+++ V E L + I + I + L +N
Sbjct: 458 EIEKELKVDSVEELLSNFVHISNAILLHLKKNK 490
>gi|56963113|ref|YP_174840.1| phage-related tail protein [Bacillus clausii KSM-K16]
gi|56909352|dbj|BAD63879.1| phage-related tail protein [Bacillus clausii KSM-K16]
Length = 1554
Score = 37.3 bits (85), Expect = 6.1, Method: Composition-based stats.
Identities = 34/218 (15%), Positives = 75/218 (34%), Gaps = 27/218 (12%)
Query: 322 GRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGF 381
G + +AS LTG ++ T +D +N+ ++ + Q + + E+I AE
Sbjct: 736 GSQEVTDEMASNLTGKFSEMGTMIKDELNK--NYTQSQQDLEKFLGQSEVITAEHQAEIQ 793
Query: 382 ADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSI- 440
E+ ++S +EG + R + + +I++ + + ++
Sbjct: 794 KRYEDHYNARVSHTEEMEGRINDIVQTAADENRSITDAERAEIN-RIKDSMMEANVRAVA 852
Query: 441 PGIDSK--IKVAL-GENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLG----- 492
G + I L ++ + A + D + E + G I+ +
Sbjct: 853 EGSTEQKAILEQLKADSSVIN----AEQAADTVKKSIEARDGAIKAANERYDETVQWAIT 908
Query: 493 -------TPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523
D+ + +I AR + E + E
Sbjct: 909 QRDETGLITADEADQIIKEARRQR----DESITAAEDA 942
>gi|325336774|gb|ADZ13048.1| Ribosomal protein S1 [Riemerella anatipestifer RA-GD]
Length = 603
Score = 37.3 bits (85), Expect = 6.2, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 6/102 (5%)
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
+V+ ISL R +P++ +G V + R Q+ +K R +
Sbjct: 82 IVDIDFKSEGVISLNEFR-YNPNLKVGDEVEVMVD----RREDKTGQLQLSHKKARTLKA 136
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDE 169
+ ++ + GE+++G VK G +IVD+ + + +
Sbjct: 137 WDKVNQYHE-SGEVVNGFVKSRTKGGMIVDVFGIEAFLPGSQ 177
>gi|237737742|ref|ZP_04568223.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
gi|229419622|gb|EEO34669.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
Length = 322
Score = 37.3 bits (85), Expect = 6.2, Method: Composition-based stats.
Identities = 37/254 (14%), Positives = 79/254 (31%), Gaps = 24/254 (9%)
Query: 35 IQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIG 94
+ + + I+ +T V + V N + LK P + +
Sbjct: 47 LIAVYQDKLAVRIPFEINIDKDT---------TVRDLVANKNEEEVLKTINKLLP-VQVN 96
Query: 95 GVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNV 154
++ + ++ + + R Y + E K N+
Sbjct: 97 NYMTVKFGQVKLNVKNAKNIPETTVDNKRYIITSSLYSMYDSLYNE---QQNKNEVNENI 153
Query: 155 IVDL---GNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKL 211
IVD+ +G RR + EN++ +K + + ++L ++
Sbjct: 154 IVDVLNANGINGYARR----TGENIKNKLGMKYNAANYEKNLEESYIIL----NDISIEK 205
Query: 212 FHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRD 271
V ++ +++ V P + V + +ID G + VQ++ EL+
Sbjct: 206 AQDIVMQLNEKYFKIQQVPTIPTLANIVVVLGQEKNIDFTIEVAGENNATVQSISNELKR 265
Query: 272 EKIDIVVWSPDSAT 285
E V D
Sbjct: 266 EGYRKVESEKDKIK 279
>gi|145592504|ref|YP_001154506.1| DNA repair and recombination protein RadA [Pyrobaculum arsenaticum
DSM 13514]
gi|166218765|sp|A4WN87|RADA_PYRAR RecName: Full=DNA repair and recombination protein radA
gi|145284272|gb|ABP51854.1| DNA repair and recombination protein RadA [Pyrobaculum arsenaticum
DSM 13514]
Length = 333
Score = 37.3 bits (85), Expect = 6.4, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 18/79 (22%)
Query: 432 GVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSL 491
++ + G+ L E G T++D+A SV +L
Sbjct: 22 SPDLDVEELEGVGKVTGAKLKEKGFYTVKDVAFASVKELAEIIG---------------- 65
Query: 492 GTPKDQVESMIIHARYKMG 510
+++ +I AR +G
Sbjct: 66 --NEERALQIIESARKMLG 82
>gi|124002318|ref|ZP_01687171.1| leucine-rich protein [Microscilla marina ATCC 23134]
gi|123992147|gb|EAY31515.1| leucine-rich protein [Microscilla marina ATCC 23134]
Length = 1282
Score = 37.3 bits (85), Expect = 6.4, Method: Composition-based stats.
Identities = 26/143 (18%), Positives = 49/143 (34%), Gaps = 19/143 (13%)
Query: 376 LVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSE 435
L +E +A + + +E D E + AR + +KI L
Sbjct: 92 LRENSIDRIENIAHLTNLQYLDLEENDIEVIENLDHLARLEYLNLRGNAIEKIGNLNALT 151
Query: 436 ELC-------------SIPGIDSKIKVALGENGIKTMEDLAGCSV----DDLLGWSENKG 478
+L ++ + + L EN IK +E+LAG + D LG++
Sbjct: 152 QLVHLELSSNSLERVENLNHLKHLQNLDLRENNIKKIENLAGLTALTRLD--LGYNGFGK 209
Query: 479 GNIEKFDGFLSSLGTPKDQVESM 501
L L ++ ++ +
Sbjct: 210 IEGLHNLPRLKQLELEENDIKKI 232
>gi|313205786|ref|YP_004044963.1| SSU ribosomal protein s1p [Riemerella anatipestifer DSM 15868]
gi|312445102|gb|ADQ81457.1| SSU ribosomal protein S1P [Riemerella anatipestifer DSM 15868]
gi|315022816|gb|EFT35840.1| 30S ribosomal protein S1 [Riemerella anatipestifer RA-YM]
Length = 593
Score = 37.3 bits (85), Expect = 6.4, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 6/102 (5%)
Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127
+V+ ISL R +P++ +G V + R Q+ +K R +
Sbjct: 72 IVDIDFKSEGVISLNEFR-YNPNLKVGDEVEVMVD----RREDKTGQLQLSHKKARTLKA 126
Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDE 169
+ ++ + GE+++G VK G +IVD+ + + +
Sbjct: 127 WDKVNQYHE-SGEVVNGFVKSRTKGGMIVDVFGIEAFLPGSQ 167
>gi|260893017|ref|YP_003239114.1| hydroxymethylbutenyl pyrophosphate reductase [Ammonifex degensii
KC4]
gi|260865158|gb|ACX52264.1| hydroxymethylbutenyl pyrophosphate reductase [Ammonifex degensii
KC4]
Length = 654
Score = 37.3 bits (85), Expect = 6.5, Method: Composition-based stats.
Identities = 37/184 (20%), Positives = 68/184 (36%), Gaps = 24/184 (13%)
Query: 114 AKQVIIQKVREAERDRQYLEFKD------KVGEIISGTVKRVEYGNVIVDLG-NSDGVIR 166
+ + +++RE + + + GEI+ GTV + G V+VD+G ++GVI
Sbjct: 266 IIEEVEKRMREIGEMSAAEQMEAVGVKTFRGGEIVRGTVVEINQGEVLVDIGAKTEGVIP 325
Query: 167 RDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIY 220
E E ++ GD + ++ + + +R K
Sbjct: 326 LRELCCCEVSSPHEVVKVGDEIDVFVVKAEDAEGRIILSKARADAIAAWKKLAE---AFA 382
Query: 221 NGIVQVKAVSRD---PGSRAKLAVFSSDS----SIDPVGACVGMRGSRVQAVVTELRDEK 273
NG V+ + R+ G + V + I V G +V+A V EL +
Sbjct: 383 NGT-PVEGIVREVVKGGLIVDVGVRAFLPASLVDISYVENLSTYLGQKVRAKVIELDRSR 441
Query: 274 IDIV 277
+V
Sbjct: 442 KKVV 445
>gi|6683006|dbj|BAA88984.1| RadA [Pyrobaculum islandicum]
Length = 315
Score = 37.3 bits (85), Expect = 6.5, Method: Composition-based stats.
Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 18/81 (22%)
Query: 430 ELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLS 489
E+ ++ + G+ L E G T+ D+A SV +L
Sbjct: 2 EITPDLDVEELEGVGRVTGAKLKERGFFTVRDVAFASVKELAEIVG-------------- 47
Query: 490 SLGTPKDQVESMIIHARYKMG 510
+++ + ++ AR +G
Sbjct: 48 ----NEERAQQIVEAARKMLG 64
>gi|300711894|ref|YP_003737708.1| hypothetical protein HacjB3_12675 [Halalkalicoccus jeotgali B3]
gi|299125577|gb|ADJ15916.1| hypothetical protein HacjB3_12675 [Halalkalicoccus jeotgali B3]
Length = 213
Score = 37.3 bits (85), Expect = 6.7, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 25/79 (31%)
Query: 392 ISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVAL 451
SE +E + E E + E E L I GI L
Sbjct: 114 DSESEPMETVESEPVDETGTETEDADRDSHTGTDAAGPEAAEQEALREIKGIGPSYATKL 173
Query: 452 GENGIKTMEDLAGCSVDDL 470
E G+ ++ DLA +L
Sbjct: 174 SEAGVDSVADLAAADAGEL 192
>gi|325479579|gb|EGC82675.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
prevotii ACS-065-V-Col13]
Length = 687
Score = 37.3 bits (85), Expect = 6.9, Method: Composition-based stats.
Identities = 32/211 (15%), Positives = 78/211 (36%), Gaps = 17/211 (8%)
Query: 24 RDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKV 83
++ ++ + DS++K + I V+ + +F ++ + +++ +
Sbjct: 279 KEEFMNSLEDSLKKVYPKEIVKGTVIDVKDD------EIFVDIQFRADGIIKLDEMTEEE 332
Query: 84 ARDRDPSIDIGGVVSDP-LPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEII 142
+D S +IG + + D S ++V +V K + E++
Sbjct: 333 RKDPKSSFNIGDEIDVYVIKLDDGEGNVALSTRRVEGMRV----WKDLAE--KAENDELV 386
Query: 143 SGTVKRVEYGNVIVDLGNSDGVIRRDETISR--ENLRPGDRVKSYIYDVRREQRGPQVLL 200
G V G + V++ +G + + + +N + + V ++R +++L
Sbjct: 387 HGEVTGFNKGGLTVNVDGVNGFVPASQIATYFVKNFKKFVGEDWDLKIVSIDERKNRLVL 446
Query: 201 SRTHPQFMVKLFHMEVPEIYNGIVQVKAVSR 231
SR + E+ G V V+R
Sbjct: 447 SRKD--VVEGQLDELWDELEEGQVVTGKVAR 475
>gi|167630001|ref|YP_001680500.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Heliobacterium
modesticaldum Ice1]
gi|167592741|gb|ABZ84489.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Heliobacterium
modesticaldum Ice1]
Length = 665
Score = 37.3 bits (85), Expect = 6.9, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 93 IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG 152
IG + + +D R +++V++++ + R + + E ++ G+ GTV+R+
Sbjct: 448 IGQTLRMRIMEIDTRRNNAVLSQKVVLEEEYKEARAKTWEEIEE--GQTRRGTVRRLTDF 505
Query: 153 NVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQ 206
VDLG DG++ E E ++ GD + Y+ V RE+ + L + P
Sbjct: 506 GAFVDLGGVDGLLHVSEMSWGRIKHPSEVVKEGDVIDVYVLKVDREKEKVSLGLKQVLPN 565
>gi|146302822|ref|YP_001190138.1| transcription elongation factor NusA-like protein [Metallosphaera
sedula DSM 5348]
gi|145701072|gb|ABP94214.1| NusA family KH domain protein [Metallosphaera sedula DSM 5348]
Length = 143
Score = 37.3 bits (85), Expect = 7.1, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 275 DIVVWSPDSATFVINALRPAIVTKVVLDEDV--GRIEVIVPKEQLSLAIGRRGQNVRLAS 332
++V +S + + N + PA V V + + V V + ++AIG+ G+NV A
Sbjct: 69 EVVAYSENLEDLIKNLMSPARVKSVKTIDSNSRKTVHVTVDPQDKAIAIGKAGRNVSRAK 128
Query: 333 QLTGWTIDI 341
+ +DI
Sbjct: 129 IILKRYMDI 137
>gi|229170735|ref|ZP_04298366.1| DNA-damage repair protein [Bacillus cereus AH621]
gi|228612740|gb|EEK69934.1| DNA-damage repair protein [Bacillus cereus AH621]
Length = 421
Score = 37.3 bits (85), Expect = 7.2, Method: Composition-based stats.
Identities = 30/195 (15%), Positives = 60/195 (30%), Gaps = 19/195 (9%)
Query: 287 VINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRL-----------ASQLT 335
+ L P V+ + +++ A+G + RL + +
Sbjct: 27 IKMGLDPLHTKLAVVGDVNRSGSIVLAATPPLKALGVKKM-ARLYEIPRRKDILVVNPIM 85
Query: 336 GWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEI 395
G I + + Q+ + +D + L A+ + +I +
Sbjct: 86 GTYIKCSNYITKLALQYVPIEDFHQYSIDEFFMDITDSIHLFAQDPYEFAMKFKREIYDH 145
Query: 396 ASIEGFDEETAVEIQGR-AREYLEGIDITLQKKIRELGVSEELCSIP------GIDSKIK 448
+E + + A + + + V +L SI GI K +
Sbjct: 146 TRVECTIGIAPNPLMSKVALDIDAKKNTDGIAFWKYEDVPTKLWSIRPLNKFWGISHKTE 205
Query: 449 VALGENGIKTMEDLA 463
L GI ++EDLA
Sbjct: 206 EKLNRKGIHSIEDLA 220
>gi|260426251|ref|ZP_05780230.1| xanthine dehydrogenase, molybdenum binding subunit apoprotein
[Citreicella sp. SE45]
gi|260420743|gb|EEX13994.1| xanthine dehydrogenase, molybdenum binding subunit apoprotein
[Citreicella sp. SE45]
Length = 763
Score = 37.3 bits (85), Expect = 7.3, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 15 AVAYEKSIDRDVVLS-VMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVE 73
A+A EK R+ +L+ + D IQ ARS +EI+ ETG + + VV++
Sbjct: 586 ALAREKG--REDLLTWSVRDKIQ--ARSYPNGAHFAEIEIDRETGVAEVVKY-TVVDDFG 640
Query: 74 N 74
N
Sbjct: 641 N 641
>gi|189201225|ref|XP_001936949.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187984048|gb|EDU49536.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 1497
Score = 36.9 bits (84), Expect = 7.4, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 46/140 (32%), Gaps = 7/140 (5%)
Query: 262 VQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE------DVGRIEVIVPKE 315
+ +V ++ + + V A P + L E ++V VP
Sbjct: 360 INEIVRDINRRSKAKLEYKQAPGGLVFEATGPVEAVRQALKEVANEVGSKQSVDVPVPAS 419
Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHL 375
+ IGR+G ++ S+ TG I++ + E + N + +
Sbjct: 420 VRAHIIGRQGSKIQEISKRTGARINV-PKPEAGEDEDTIINVHIEGNALTAEMARREIDA 478
Query: 376 LVAEGFADVEELACVKISEI 395
+V E + V +E
Sbjct: 479 IVNERTSTVNLRLKDIPAEF 498
>gi|322792902|gb|EFZ16735.1| hypothetical protein SINV_14612 [Solenopsis invicta]
Length = 555
Score = 36.9 bits (84), Expect = 7.7, Method: Composition-based stats.
Identities = 29/149 (19%), Positives = 61/149 (40%), Gaps = 20/149 (13%)
Query: 249 DPVGACVGMRGSRVQAVVT-----------------ELRDEKIDIVVWSPD---SATFVI 288
+ VGA +G +GS ++ ++ E + E+ +V SP+ A ++I
Sbjct: 339 NSVGAIIGTKGSHIRNIIRFSGASVKIAPLEQDKPAEQQTERKVTIVGSPESQWKAQYLI 398
Query: 289 NALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
++ IE++VP Q+ IG+ GQNVR ++TG I + ++
Sbjct: 399 FEKMREEGYVAGTEDVRLTIEILVPSTQVGRIIGKGGQNVRELQRVTGSVIKLSEQQATP 458
Query: 349 INRQKDFNERTQFFMQAINVDEIIAHLLV 377
+ +++ ++ + +V
Sbjct: 459 PSAEEETTVHIIGPFFSVQSAQRRIRAMV 487
>gi|299820982|ref|ZP_07052871.1| DNA-directed RNA polymerase subunit alpha [Listeria grayi DSM
20601]
gi|299818003|gb|EFI85238.1| DNA-directed RNA polymerase subunit alpha [Listeria grayi DSM
20601]
Length = 314
Score = 36.9 bits (84), Expect = 8.0, Method: Composition-based stats.
Identities = 40/234 (17%), Positives = 81/234 (34%), Gaps = 12/234 (5%)
Query: 269 LRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNV 328
L +K+ + ++S D T I+ P +VT ++ D +E++ P ++ +V
Sbjct: 80 LNIKKLALKIYSDDEKTLEIDVQGPGVVTAGDINYDSD-VEILNPDLHIATLSDNAKFHV 138
Query: 329 RLASQ----LTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADV 384
RL + T ++ + + + + DV
Sbjct: 139 RLNATRGRGYTPADLNKHENMPIGVLPVDSIFSPVIRVNYQVENTRVGQSTNYDKLSFDV 198
Query: 385 EELACVKISEI----ASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSI 440
+ E A I V + A++ I+ K + L ++ E +
Sbjct: 199 LTDGSISPEEAVSLGAKILSEHLSIFVNLTDEAQKAEIMIEKEESHKEKVLEMTIEELDL 258
Query: 441 PGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTP 494
+ L GI T+++LA S DD++ ++E+ L+ LG
Sbjct: 259 ---SVRSYNCLKRAGINTVQELADKSEDDMMKVRNLGRKSLEEVKVKLADLGLS 309
>gi|119872000|ref|YP_930007.1| Rad51-like protein [Pyrobaculum islandicum DSM 4184]
gi|119673408|gb|ABL87664.1| Rad51-like protein [Pyrobaculum islandicum DSM 4184]
Length = 311
Score = 36.9 bits (84), Expect = 8.1, Method: Composition-based stats.
Identities = 13/57 (22%), Positives = 25/57 (43%)
Query: 436 ELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLG 492
+L S+ G+ K L E GI ++E L+ + ++L ++ L +G
Sbjct: 7 DLSSLEGVGPKTFEKLMELGITSLEHLSEFTAEELAEAGIEYERAVKLLQQVLQKVG 63
>gi|255547195|ref|XP_002514655.1| glycine-rich RNA-binding protein, putative [Ricinus communis]
gi|223546259|gb|EEF47761.1| glycine-rich RNA-binding protein, putative [Ricinus communis]
Length = 267
Score = 36.9 bits (84), Expect = 8.3, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 9/60 (15%)
Query: 3 SANRLELLQIADAVAYEK----SIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETG 58
SA+R + Q ++ K I + + ++ YG + + RV I+ ETG
Sbjct: 24 SASRPSMFQAIRFMSSSKVFVGGISYQTDDTSLREAFG-----KYGEVIEARVIIDRETG 78
>gi|149911156|ref|ZP_01899781.1| electron transfer flavoprotein beta-subunit [Moritella sp. PE36]
gi|149805757|gb|EDM65754.1| electron transfer flavoprotein beta-subunit [Moritella sp. PE36]
Length = 250
Score = 36.9 bits (84), Expect = 8.3, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 35 IQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIG 94
I A + + ++RV+ + ETG I + V+ N C+I+++ A
Sbjct: 3 ILVAVKRVVDHKVNVRVKTD-ETG-IETANVKMVI----NPFCEIAIEQAVRFKEQGSAD 56
Query: 95 GVVSDPLPPMD 105
VV + P +
Sbjct: 57 EVVLVCIGPKE 67
>gi|322790963|gb|EFZ15611.1| hypothetical protein SINV_02512 [Solenopsis invicta]
Length = 341
Score = 36.9 bits (84), Expect = 8.3, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCS-IPGIDSKIKVAL 451
E + G E+ A +I E+L+ + + E VS L + + GI L
Sbjct: 59 KEAKKLPGIGEKIAKKI----DEFLQTGKLQKLEDKDETNVSISLLARVSGIGPAKAKEL 114
Query: 452 GENGIKTMEDL 462
E GIKT+EDL
Sbjct: 115 VEAGIKTLEDL 125
>gi|161527751|ref|YP_001581577.1| DEAD/DEAH box helicase domain-containing protein [Nitrosopumilus
maritimus SCM1]
gi|160339052|gb|ABX12139.1| DEAD/DEAH box helicase domain protein [Nitrosopumilus maritimus
SCM1]
Length = 709
Score = 36.9 bits (84), Expect = 8.3, Method: Composition-based stats.
Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 14/105 (13%)
Query: 384 VEELACVKISEIASIEGFDEETAVE--------IQGRAR---EYLEGIDITLQKKIRELG 432
+ E + +S+ IE D E ++ A+ ++ ++ G
Sbjct: 586 ITESTELNLSDSLGIESGDMHRMTETGNWLCYCLREIAKHVERADLLEELGDLRRRISYG 645
Query: 433 VSEELCSI---PGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWS 474
+ EEL + GI L ++GIK ++DLA V+ L
Sbjct: 646 IREELLDLVRVKGIGRVRARILFKHGIKNLDDLAKIPVNKLAEID 690
>gi|198476743|ref|XP_001357465.2| GA17619 [Drosophila pseudoobscura pseudoobscura]
gi|198137832|gb|EAL34535.2| GA17619 [Drosophila pseudoobscura pseudoobscura]
Length = 5605
Score = 36.9 bits (84), Expect = 8.4, Method: Composition-based stats.
Identities = 17/168 (10%), Positives = 46/168 (27%), Gaps = 16/168 (9%)
Query: 334 LTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVA-EGFADVEELACVKI 392
+T ++ + + + + + E ++ +A
Sbjct: 3613 MTDESVIKKEATPATTPVKDEVKAEQESPEKKKETPESPTEASAKKSEESETASVAEETE 3672
Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALG 452
+ + I+ D +T +A E ++ + + ++ + D
Sbjct: 3673 EDTSKIKDEDTDTV-----KAESSPEKEVLSADAEEKSSEAEKDASAAEVTDES------ 3721
Query: 453 ENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVES 500
K+ EDLA VD+ + + + + E
Sbjct: 3722 ----KSSEDLAKMEVDEPIAENGEEKEETTSPEVEAEDASIESTSAEE 3765
>gi|119719931|ref|YP_920426.1| Rad51-like [Thermofilum pendens Hrk 5]
gi|119525051|gb|ABL78423.1| Rad51-like protein [Thermofilum pendens Hrk 5]
Length = 315
Score = 36.9 bits (84), Expect = 8.5, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 17/79 (21%)
Query: 433 VSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLG 492
EEL GI L GI+T+EDL + ++L + G
Sbjct: 4 PIEELGKEEGIGRVTISRLKSAGIETVEDLVLYNPEELEELA-----------------G 46
Query: 493 TPKDQVESMIIHARYKMGW 511
++ ++ AR GW
Sbjct: 47 IDFERALRLVRTARRLAGW 65
>gi|330833904|ref|YP_004408632.1| transcription elongation factor NusA-like protein [Metallosphaera
cuprina Ar-4]
gi|329566043|gb|AEB94148.1| transcription elongation factor NusA-like protein [Metallosphaera
cuprina Ar-4]
Length = 143
Score = 36.9 bits (84), Expect = 8.5, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 275 DIVVWSPDSATFVINALRPAIVTKVVLDEDV--GRIEVIVPKEQLSLAIGRRGQNVRLAS 332
++V +S + V N + PA V V + + V V + ++AIG+ G+NV A
Sbjct: 69 EVVAYSDNLEDLVKNLMSPARVRSVKTIDSNSRKTVHVSVDPQDKAIAIGKAGRNVSRAK 128
Query: 333 QLTGWTIDI 341
+ +DI
Sbjct: 129 IILKRYMDI 137
>gi|75911030|ref|YP_325326.1| beta-ketoacyl synthase [Anabaena variabilis ATCC 29413]
gi|75704755|gb|ABA24431.1| Beta-ketoacyl synthase [Anabaena variabilis ATCC 29413]
Length = 1646
Score = 36.9 bits (84), Expect = 8.9, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 47/166 (28%), Gaps = 30/166 (18%)
Query: 327 NVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEE 386
+RLA +TG + I + T+ I
Sbjct: 1285 AMRLARTITGRNLIAIFSGGYHGILDEVIVRGTKKLRSIPAAPGIPQE------------ 1332
Query: 387 LACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSK 446
K+ I I+ + ++ RA E + ++Q + E E L + +
Sbjct: 1333 ----KVDNILVIDYDAPDALDILKSRADELAGVMVESVQSRRPEYQPREFLQQLRQFTEQ 1388
Query: 447 IKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLG 492
ED+A D+++ G + G + +
Sbjct: 1389 -------------EDIA-LIFDEIVTGFRIHPGGAQAHFGIKADIA 1420
>gi|160944373|ref|ZP_02091601.1| hypothetical protein FAEPRAM212_01883 [Faecalibacterium prausnitzii
M21/2]
gi|158444155|gb|EDP21159.1| hypothetical protein FAEPRAM212_01883 [Faecalibacterium prausnitzii
M21/2]
Length = 1010
Score = 36.9 bits (84), Expect = 9.1, Method: Composition-based stats.
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 2/73 (2%)
Query: 433 VSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLG 492
+S+ L + + ++ L N I T+ L CS +L GG
Sbjct: 1 MSDLLLASTNLSTRAINILARNNILTLSQLKECSEKELRSMRGL-GGKTLDEIVTFRDNP 59
Query: 493 TPKDQVESMIIHA 505
++ + ++A
Sbjct: 60 LDEETADET-MNA 71
>gi|269216200|ref|ZP_06160054.1| DNA-directed RNA polymerase, beta subunit [Slackia exigua ATCC
700122]
gi|269130459|gb|EEZ61537.1| DNA-directed RNA polymerase, beta subunit [Slackia exigua ATCC
700122]
Length = 1458
Score = 36.9 bits (84), Expect = 9.2, Method: Composition-based stats.
Identities = 23/115 (20%), Positives = 36/115 (31%), Gaps = 5/115 (4%)
Query: 385 EELACVKISEIASIEGF-----DEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCS 439
E+L +E+ IE D A + KK+ + L
Sbjct: 1251 EDLPESAPAELREIEDLLPQPQDWALDEGYGAYANYFGANGYRGHGKKLSDEDARLYLYD 1310
Query: 440 IPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTP 494
G+ + E GI T+ DL G + D+LL +E+ L
Sbjct: 1311 DLGVSQRWANKFSEAGIDTVGDLVGYTEDELLRIEGIGAKALEELKAGLEEHELS 1365
>gi|332025247|gb|EGI65421.1| Insulin-like growth factor 2 mRNA-binding protein 1 [Acromyrmex
echinatior]
Length = 568
Score = 36.5 bits (83), Expect = 9.7, Method: Composition-based stats.
Identities = 29/149 (19%), Positives = 61/149 (40%), Gaps = 20/149 (13%)
Query: 249 DPVGACVGMRGSRVQAVVT-----------------ELRDEKIDIVVWSPD---SATFVI 288
+ VGA +G +GS ++ ++ E + E+ +V SP+ A ++I
Sbjct: 348 NSVGAIIGTKGSHIRNIIRFSGASVKIAPLEQDKPAEQQTERKVTIVGSPESQWKAQYLI 407
Query: 289 NALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348
++ IE++VP Q+ IG+ GQNVR ++TG I + ++
Sbjct: 408 FEKMREEGYVAGTEDVRLTIEILVPSTQVGRIIGKGGQNVRELQRVTGSVIKLSEQQATP 467
Query: 349 INRQKDFNERTQFFMQAINVDEIIAHLLV 377
+ +++ ++ + +V
Sbjct: 468 PSAEEETTVHIIGPFFSVQSAQRRIRAMV 496
>gi|255084866|ref|XP_002504864.1| predicted protein [Micromonas sp. RCC299]
gi|226520133|gb|ACO66122.1| predicted protein [Micromonas sp. RCC299]
Length = 874
Score = 36.5 bits (83), Expect = 9.7, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 15/84 (17%)
Query: 442 GIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG----NIEKFDGFLSSLGTPKDQ 497
G+ K L G EDL +D+L GW E + K +G+ +L +D+
Sbjct: 323 GMPKKTA--LARAG---REDLIE-RIDELGGWYEAAAQLGLRSNRKPNGYWENLDFLRDE 376
Query: 498 VESMIIHARYKMGWIEKEKVADEE 521
+ +I W ++E E
Sbjct: 377 LLQLI-----YAFWFQEEDEDTGE 395
>gi|225028131|ref|ZP_03717323.1| hypothetical protein EUBHAL_02401 [Eubacterium hallii DSM 3353]
gi|224954601|gb|EEG35810.1| hypothetical protein EUBHAL_02401 [Eubacterium hallii DSM 3353]
Length = 378
Score = 36.5 bits (83), Expect = 9.7, Method: Composition-based stats.
Identities = 27/189 (14%), Positives = 54/189 (28%), Gaps = 29/189 (15%)
Query: 292 RPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG---WTIDIITEEEDS 348
P ++ +D G+ + ++ L + I + T+
Sbjct: 169 GPCTSYELADHDDSHVAFC-----------GKDIETLKYIKSLLETDYYHISLSTDVVGV 217
Query: 349 INRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408
N A+ + E + ++ + L + E+ +
Sbjct: 218 ECAVAMKNAYALGVSLAVGLAEKRDGKIGSQHYNSQAALFGQSVKEMTKLLELIGGKPEN 277
Query: 409 IQGRAREYLEGIDITLQKKI-----RELGVSEELCSIPGIDSKIKV----------ALGE 453
I A + I +KI R L E + + G+ + V L E
Sbjct: 278 IIHGAGDLYVTIFGGRTRKIGTLLGRGLSFEEAMAELQGVTLESIVISTRTARAVRKLAE 337
Query: 454 NGIKTMEDL 462
GI ++ED
Sbjct: 338 RGIVSLEDF 346
>gi|307354072|ref|YP_003895123.1| DNA topoisomerase I [Methanoplanus petrolearius DSM 11571]
gi|307157305|gb|ADN36685.1| DNA topoisomerase I [Methanoplanus petrolearius DSM 11571]
Length = 932
Score = 36.5 bits (83), Expect = 9.8, Method: Composition-based stats.
Identities = 35/212 (16%), Positives = 74/212 (34%), Gaps = 13/212 (6%)
Query: 260 SRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSL 319
S+V + E + ++ + + + + ++ GR V
Sbjct: 708 SKVTGISKE---DSEKLIREADEVLELLRKRSELKKFVRKIIPPKRGRSHAKVLNMFFDA 764
Query: 320 AIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAE 379
I R A + T + + EE +S++ + + ++ V +
Sbjct: 765 GIVDMESLAR-ADKKTLEKMKLSAEEAESLSHEAR-LVYNKALLKEYGVPAVSLKKYFDA 822
Query: 380 GFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSE---E 436
GF E+ + + +++ G + +T A E + L +K+ + + E
Sbjct: 823 GFVTPEDFCYIHPAYLSAKTGLNIDTV---YKHAAIVCEATGVRLPEKVSKKELESGRIE 879
Query: 437 LCSIPGIDSKIKVALGENGIKTMEDLAGCSVD 468
L SI G+ + L GI + + L CS D
Sbjct: 880 LLSIEGLGEAMLEKLYMAGIVSRKKL--CSAD 909
>gi|154413466|ref|XP_001579763.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
gi|121913973|gb|EAY18777.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
Length = 857
Score = 36.5 bits (83), Expect = 9.8, Method: Composition-based stats.
Identities = 32/182 (17%), Positives = 54/182 (29%), Gaps = 20/182 (10%)
Query: 340 DIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIE 399
+I D F + ++ E+ + G + + I EI S+
Sbjct: 655 HVINLITDKTQEDLRRMIIQSFNGKKLSQSEMSLFERIYAGCVLEKLIDEHSIVEIESMF 714
Query: 400 GFDEETAVEIQGRAREYLEGIDITLQK--------------KIRELGVSEELCSI---PG 442
D T +Q + Y ++ K E GV +EL + P
Sbjct: 715 KIDRGTIQILQTSSGSYAGQATKFCEEMDYSILAAALVRFRKRLEFGVKDELIELMEIPS 774
Query: 443 IDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPK---DQVE 499
I +I L N IKT D+ S DL + G + + +
Sbjct: 775 ITREIARDLYNNDIKTTIDICEMSRRDLYHIVKKAKGGFGSGLNDNDIKSISRSIKSEAK 834
Query: 500 SM 501
+
Sbjct: 835 KL 836
>gi|150021387|ref|YP_001306741.1| DNA ligase, NAD-dependent [Thermosipho melanesiensis BI429]
gi|190359297|sp|A6LN55|DNLJ_THEM4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|149793908|gb|ABR31356.1| DNA ligase, NAD-dependent [Thermosipho melanesiensis BI429]
Length = 662
Score = 36.5 bits (83), Expect = 9.9, Method: Composition-based stats.
Identities = 33/189 (17%), Positives = 63/189 (33%), Gaps = 15/189 (7%)
Query: 332 SQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVK 391
+Q++G I + + I + K I + ++AE F ++E+L+
Sbjct: 478 AQISGLGQKSIAKILEQIEKSKKTPLNRVIVGLGIPMVGEKTSKILAEKFKNIEKLSSAT 537
Query: 392 ISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELC---SIPGIDSKIK 448
E+ IE E A I + I KK +++ + G+ I
Sbjct: 538 YDELIKIENIGPEIAKSIVTYFQNEKTKEIINKLKKAGVNLEEKDVKKSDKLKGLTFAIT 597
Query: 449 VALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHA-RY 507
L T E ++ E GG + ++ ++ S + A R
Sbjct: 598 GKLKS---YTRE--------EIKKIIEENGGKVSNSVSSKTNFLIAGEEPGSKLEKAKRL 646
Query: 508 KMGWIEKEK 516
+ I +E
Sbjct: 647 NIKIISEED 655
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.312 0.141 0.387
Lambda K H
0.267 0.0431 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,818,548,202
Number of Sequences: 14124377
Number of extensions: 260959840
Number of successful extensions: 1094481
Number of sequences better than 10.0: 4303
Number of HSP's better than 10.0 without gapping: 2446
Number of HSP's successfully gapped in prelim test: 1857
Number of HSP's that attempted gapping in prelim test: 1047211
Number of HSP's gapped (non-prelim): 30554
length of query: 526
length of database: 4,842,793,630
effective HSP length: 144
effective length of query: 382
effective length of database: 2,808,883,342
effective search space: 1072993436644
effective search space used: 1072993436644
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 84 (36.9 bits)