RPSBLAST alignment of GI: 254780788 and protein with PDBid: 1hh2

>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A Length = 344

 Score =  412 bits (1061), Expect = e-116
 Identities = 141/341 (41%), Positives = 225/341 (65%), Gaps = 1/341 (0%)

Query: 7   LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66
           + LL+  D +  EK I ++ V+ ++  ++  A R  +G   ++ V I+  TG+I +++LL
Sbjct: 3   IGLLEALDQLEEEKGISKEEVIPILEKALVSAYRKNFGNSKNVEVVIDRNTGNIKVYQLL 62

Query: 67  EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
           EVVEEVE+   QISL+ A+  DP  ++G +V   L   +FGR+A Q+AKQV+IQ++RE E
Sbjct: 63  EVVEEVEDPATQISLEEAKKIDPLAEVGSIVKKELNVKNFGRIAAQTAKQVLIQRIRELE 122

Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
           +++Q+ ++ +  G + +  V RV      + +G  +  + + E I  E ++ GD VK YI
Sbjct: 123 KEKQFEKYSELKGTVTTAEVIRVMGEWADIRIGKLETRLPKKEWIPGEEIKAGDLVKVYI 182

Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
            DV +  +GP++L+SR  P+F++ L  +E+PE+ NGIV++KA++R+PG R K+AV S+D 
Sbjct: 183 IDVVKTTKGPKILVSRRVPEFVIGLMKLEIPEVENGIVEIKAIAREPGVRTKVAVASNDP 242

Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDV 305
           ++DP+GAC+G  GSR+ A++ EL+ EK+D++ WS D    + NAL PA V +V +LD++ 
Sbjct: 243 NVDPIGACIGEGGSRIAAILKELKGEKLDVLKWSDDPKQLIANALAPATVIEVEILDKEN 302

Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346
               V+VP  QLSLAIG+ GQN RLA++LTGW IDI     
Sbjct: 303 KAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPIMN 343