RPSBLAST alignment of GI: 254780788 and protein with PDBid: 2asb
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A Length = 251
Score = 258 bits (661), Expect = 2e-69
Identities = 99/243 (40%), Positives = 141/243 (58%), Gaps = 9/243 (3%)
Query: 133 EFKDKVGEIISGTVKRVEYGN----VIVDLGNSD----GVIRRDETISRENLRPGDRVKS 184
EF + GEI++G ++R N V+V +G GVI E + E+ G+R++
Sbjct: 2 EFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRC 61
Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244
Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV S+
Sbjct: 62 YVVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSN 121
Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304
+ ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V + +
Sbjct: 122 VAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQ 181
Query: 305 VGR-IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363
R V+VP QLSLAIG+ GQN RLA++LTGW IDI + Q +
Sbjct: 182 TARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDAXXXXXGQPEPGVSRGMAH 241
Query: 364 QAI 366
+
Sbjct: 242 DRL 244