BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780788|ref|YP_003065201.1| transcription elongation
factor NusA [Candidatus Liberibacter asiaticus str. psy62]
         (526 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780788|ref|YP_003065201.1| transcription elongation factor NusA [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 526

 Score = 1057 bits (2734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/526 (100%), Positives = 526/526 (100%)

Query: 1   MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60
           MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI
Sbjct: 1   MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60

Query: 61  SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120
           SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ
Sbjct: 61  SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120

Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180
           KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD
Sbjct: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180

Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240
           RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA
Sbjct: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240

Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300
           VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV
Sbjct: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300

Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360
           LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ
Sbjct: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360

Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420
           FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI
Sbjct: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420

Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480
           DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN
Sbjct: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480

Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDAS 526
           IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDAS
Sbjct: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDAS 526


>gi|254780456|ref|YP_003064869.1| 30S ribosomal protein S1 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 576

 Score = 29.6 bits (65), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 18/126 (14%)

Query: 77  CQISLKVARDRDPSIDIGGVVSDP----LPPMDFGRVAVQSAKQVIIQKVREAERDRQYL 132
            QI ++  RD  P      ++ +P    +  MD  R  +  +++ ++++ R  +R     
Sbjct: 140 SQIDIRPVRDVTP------LMHEPQLFEILKMDKRRGNIVVSRRAVLEESRAEQRSEIVQ 193

Query: 133 EFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP------GDRVKSYI 186
           + ++  G++I GTVK +    V VDL   DG++   +      L P      G +VK  I
Sbjct: 194 KLEE--GQVIEGTVKNITDYGVFVDLSGVDGLLHVTDIAWHRILHPSKVLSIGQQVKVKI 251

Query: 187 YDVRRE 192
             + +E
Sbjct: 252 IRINQE 257


>gi|254780527|ref|YP_003064940.1| hypothetical protein CLIBASIA_02070 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 397

 Score = 24.3 bits (51), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 8/27 (29%), Positives = 16/27 (59%)

Query: 417 LEGIDITLQKKIRELGVSEELCSIPGI 443
           L  +D  L+K++    + EE+C++ G 
Sbjct: 189 LNPVDFLLEKQLDTASLGEEICNLKGF 215


>gi|254780606|ref|YP_003065019.1| cell division protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 744

 Score = 23.9 bits (50), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 14/75 (18%)

Query: 404 ETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSI--------------PGIDSKIKV 449
           ++ V +QG   E LE    +L+  + E G+  E+ ++              PGI S   +
Sbjct: 277 QSNVNLQGITHEILEKNAGSLETILEEFGIKGEIINVNPGPVVTLYEFEPAPGIKSSRVI 336

Query: 450 ALGENGIKTMEDLAG 464
            L ++  ++M  L+ 
Sbjct: 337 GLADDIARSMSSLSA 351


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.317    0.136    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 314,874
Number of Sequences: 1233
Number of extensions: 13332
Number of successful extensions: 49
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 40
Number of HSP's gapped (non-prelim): 13
length of query: 526
length of database: 328,796
effective HSP length: 78
effective length of query: 448
effective length of database: 232,622
effective search space: 104214656
effective search space used: 104214656
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 40 (20.0 bits)