Query gi|254780789|ref|YP_003065202.1| hypothetical protein CLIBASIA_03400 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 192 No_of_seqs 121 out of 1003 Neff 5.7 Searched_HMMs 33803 Date Wed Jun 1 14:04:56 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780789.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1ib8_A Conserved protein SP14 99.9 3.4E-23 1E-27 164.9 10.5 86 14-101 3-91 (91) 2 >1ib8_A Conserved protein SP14 99.5 8.7E-14 2.6E-18 106.1 6.4 70 102-175 1-70 (73) 3 >1m5q_A SMAP3, small nuclear r 87.2 1.5 4.5E-05 23.5 5.4 57 107-168 3-60 (67) 4 >1ycy_A Conserved hypothetical 83.6 2.2 6.4E-05 22.5 4.8 59 105-168 7-65 (71) 5 >3fb9_A Uncharacterized protei 81.9 3.8 0.00011 21.0 8.5 68 106-173 17-85 (90) 6 >2rm4_A CG6311-PB, DM EDC3; en 81.8 3.4 0.0001 21.3 5.2 62 110-174 8-71 (103) 7 >2vc8_A Enhancer of mRNA-decap 81.3 3.9 0.00011 21.0 5.3 60 111-173 6-67 (84) 8 >2ckk_A KIN17; beta barrel, ri 77.0 2.9 8.5E-05 21.8 3.6 51 114-169 2-53 (55) 9 >1y96_A Gemin6, SIP2, GEM-asso 76.9 5.1 0.00015 20.2 4.9 38 104-145 7-44 (74) 10 >3cw1_A Small nuclear ribonucl 74.5 6.3 0.00019 19.6 5.2 40 104-147 4-44 (174) 11 >1ljo_A Archaeal SM-like prote 72.7 4.6 0.00014 20.5 3.8 39 106-147 7-46 (77) 12 >1nz9_A Transcription antiterm 72.2 6.2 0.00018 19.7 4.3 51 112-170 6-58 (58) 13 >2e70_A Transcription elongati 71.1 4.9 0.00015 20.3 3.6 50 109-168 16-65 (71) 14 >3cw1_F Small nuclear ribonucl 70.8 7.7 0.00023 19.1 6.4 43 101-147 3-46 (86) 15 >3cw1_G Small nuclear ribonucl 68.1 8.2 0.00024 18.9 4.2 38 106-147 6-44 (76) 16 >3bw1_A SMX4 protein, U6 snRNA 67.5 6.1 0.00018 19.7 3.5 36 108-147 14-50 (96) 17 >1i8f_A Putative snRNP SM-like 67.2 7.6 0.00022 19.1 3.9 37 107-147 14-51 (81) 18 >1d3b_B Protein (small nuclear 67.0 7 0.00021 19.3 3.7 35 109-147 9-44 (91) 19 >3cw1_E Small nuclear ribonucl 65.4 9.9 0.00029 18.4 5.8 44 100-147 15-60 (92) 20 >1i4k_A Putative snRNP SM-like 64.6 8 0.00024 19.0 3.6 37 107-147 7-44 (77) 21 >1n9r_A SMF, small nuclear rib 64.4 8.7 0.00026 18.7 3.8 37 108-147 25-62 (93) 22 >1th7_A SnRNP-2, small nuclear 63.2 11 0.00032 18.1 6.8 38 107-148 12-50 (81) 23 >1h64_1 SnRNP SM-like protein; 61.3 12 0.00035 17.9 4.5 36 108-147 8-44 (75) 24 >2hbp_A Cytoskeleton assembly 60.0 3.2 9.5E-05 21.4 0.9 55 125-186 11-65 (68) 25 >1mgq_A SM-like protein; LSM, 59.8 12 0.00037 17.8 6.2 38 106-147 17-55 (83) 26 >1d3b_A Protein (small nuclear 59.7 13 0.00037 17.7 6.1 38 107-148 8-46 (75) 27 >2fwk_A U6 snRNA-associated SM 56.1 8.3 0.00025 18.9 2.5 38 106-147 29-68 (121) 28 >3cw1_D Small nuclear ribonucl 48.2 19 0.00057 16.6 4.1 38 102-146 6-44 (126) 29 >2e6z_A Transcription elongati 46.6 20 0.0006 16.4 3.6 49 113-169 10-58 (59) 30 >1b34_B Protein (small nuclear 44.8 22 0.00064 16.3 4.4 35 109-147 34-69 (118) 31 >1b34_A Protein (small nuclear 44.0 22 0.00066 16.2 5.6 62 107-172 5-70 (119) 32 >1gtd_A MTH169; synthetase, FG 40.8 25 0.00074 15.9 3.3 70 18-96 12-81 (85) 33 >2fyx_A Transposase, putative; 39.8 26 0.00077 15.8 8.3 102 6-115 6-119 (121) 34 >1qd1_A Formiminotransferase-c 34.5 28 0.00083 15.6 2.4 50 62-112 96-148 (179) 35 >1ug7_A 2610208M17RIK protein; 34.0 26 0.00076 15.8 2.1 30 59-89 89-118 (128) 36 >1dpg_A G6PD, glucose 6-phosph 33.6 33 0.00096 15.2 4.5 34 52-86 141-174 (182) 37 >3jz0_A Lincosamide nucleotidy 32.0 23 0.00067 16.1 1.6 46 1-47 1-48 (159) 38 >2bh9_A G6PD, glucose-6-phosph 29.4 38 0.0011 14.7 4.5 36 50-86 136-171 (178) 39 >1bia_A BIRA bifunctional prot 27.4 41 0.0012 14.5 4.9 45 113-162 1-45 (50) 40 >2vs7_A I-DMOI, homing endonuc 27.2 21 0.00062 16.4 0.7 36 66-101 12-52 (79) 41 >1ixd_A Cylindromatosis tumour 26.1 38 0.0011 14.8 1.8 41 111-151 18-58 (104) 42 >2yx5_A UPF0062 protein MJ1593 23.6 46 0.0014 14.2 1.9 69 18-95 11-80 (83) 43 >1ti6_B Pyrogallol hydroxytran 22.8 40 0.0012 14.6 1.5 19 83-101 45-63 (81) 44 >1uty_A Non-structural protein 21.9 21 0.00063 16.3 -0.1 36 68-103 22-69 (187) 45 >1tt9_A Formimidoyltransferase 21.9 53 0.0016 13.9 4.7 70 37-107 69-142 (180) No 1 >>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} (A:1-91) Probab=99.90 E-value=3.4e-23 Score=164.88 Aligned_cols=86 Identities=34% Similarity=0.613 Sum_probs=76.6 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECC-CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCC--CCCCCCC Q ss_conf 10014127999999999999747977999999549-98689999965877878999999999987520211--3567650 Q gi|254780789|r 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE--NIIEGHY 90 (192) Q Consensus 14 r~~~~~~i~~~i~~li~p~v~~lG~eLv~v~~~~~-~~~~LrI~ID~~dg~i~iddC~~vSr~i~~~LD~~--d~i~~~Y 90 (192) |.+....+.++|+++++|+++ +||+||+|++.+. ++++|||+||+++| |++|||+++||+|++.||++ +|++++| T Consensus 3 ~~~~~~~~~~~i~~l~~~v~~-~g~eL~~v~~~~~~~~~~l~V~iD~~~g-i~iddc~~~Sr~i~~~LD~e~~d~i~~~Y 80 (91) T 1ib8_A 3 GVDAIATIVELVREVVEPVIE-APFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEMISPVLDTIKPDPFPEQY 80 (91) T ss_dssp SCCHHHHHHHHHHHHHHHHHC-SSSEEEEEEEEEETTEEEEEEEEECSSC-CCHHHHHHHHHHHGGGTTTCCSCCCCSCE T ss_pred HHHHHHHHHHHHHHHHHHHHH-CCCEEEEEEEECCCCCCEEEEEEECCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCE T ss_conf 265899999999999999985-7988999999828997199999999999-67899999999998776044465667534 Q ss_pred EEEEEECCCCC Q ss_conf 79997278877 Q gi|254780789|r 91 RLEVSSPGIDR 101 (192) Q Consensus 91 ~LEVSSPGidR 101 (192) +|||||||++| T Consensus 81 ~LEVSSPGl~R 91 (91) T 1ib8_A 81 FLEITSPGLER 91 (91) T ss_dssp EEEEECCSSSS T ss_pred EEEEECCCCCC T ss_conf 99995799987 No 2 >>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} (A:92-164) Probab=99.47 E-value=8.7e-14 Score=106.13 Aligned_cols=70 Identities=16% Similarity=0.258 Sum_probs=64.7 Q ss_pred CCCCHHHHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCEEEEEHHHHHHCCEECC Q ss_conf 44578999987105688987226688078999985126975999963554567777269976887651725046 Q gi|254780789|r 102 PMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 (192) Q Consensus 102 pL~~~~~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~~i~l~~~~~~~k~~~~~~v~ip~~~I~kAkLv~~ 175 (192) ||++++||.+|+|+.|+|+|+.|++|+|+|+|+|.+++++.++|.++++. ...+++|||++|++|||++. T Consensus 1 PL~~~~df~r~~G~~V~i~l~~pi~g~k~f~G~L~~~~~~~i~l~~~~~~----~~~~i~i~~~~I~karL~~~ 70 (73) T 1ib8_A 1 PLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEEDELTMEYMDKT----RKKTVQIPYSLVSKARLAVK 70 (73) T ss_dssp CCSSHHHHHHHCSEEEEEECSSCSSSCSEEEEEEEEEETTEEEEEEECSS----CEEEEEECSSCCSSCEEECS T ss_pred CCCCHHHHHHHCCCEEEEEEECCCCCEEEEEEEEEEEECCEEEEEEECCC----CCEEEEEEHHHCCEEEEEEE T ss_conf 23898899986695699999636698589999999884998999981477----77499974799367799999 No 3 >>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} (A:1-67) Probab=87.25 E-value=1.5 Score=23.47 Aligned_cols=57 Identities=9% Similarity=0.120 Sum_probs=37.7 Q ss_pred HHHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEECCCCCCCCCCCEEEEEHHHHH Q ss_conf 99998710568898722668807899998512697-599996355456777726997688765 Q gi|254780789|r 107 SDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEKEKRGEKDMNELQIAISFDSLL 168 (192) Q Consensus 107 ~~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~~~~~~k~~~~~~v~ip~~~I~ 168 (192) ...+.++|+.|.|++++ .+.|.|+|.++|.. .+.|....+-.+ ..-..+-|+-++|. T Consensus 3 ~~L~~~l~k~V~V~l~d----gr~~~G~L~~~D~~~NlvL~da~E~~~-~~~G~v~irG~~I~ 60 (67) T 1m5q_A 3 AELNNLLGREVQVVLSN----GEVYKGVLHAVDNQLNIVLANASNKAG-EKFNRVFIXYRYIV 60 (67) T ss_dssp HHHHHTTTSEEEEEETT----SCEEEEEEEEECTTCCEEEEEEECTTC-CEEEEEEECGGGEE T ss_pred HHHHHHCCCEEEEEECC----CCEEEEEEEEECCCCEEEEEEEEECCC-CCCCEEEEECCCEE T ss_conf 78876279869999999----989999999987996569915798789-84566999379389 No 4 >>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} (A:) Probab=83.56 E-value=2.2 Score=22.52 Aligned_cols=59 Identities=19% Similarity=0.275 Sum_probs=39.2 Q ss_pred CHHHHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCEEEEEHHHHH Q ss_conf 7899998710568898722668807899998512697599996355456777726997688765 Q gi|254780789|r 105 RKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLL 168 (192) Q Consensus 105 ~~~~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~~i~l~~~~~~~k~~~~~~v~ip~~~I~ 168 (192) ..+-.++|.|++|.|. +++...|+|+|..++++.+.+..--... ....+.+-+..++|. T Consensus 7 LdktL~~WKg~kVAv~----vg~ehSFtGiledFDeEviLLkdV~D~~-GNk~k~liv~idDin 65 (71) T 1ycy_A 7 LEKVLKEWKGHKVAVS----VGGDHSFTGTLEDFDEEVILLKDVVDVI-GNRGKQXLIGLEDIN 65 (71) T ss_dssp HHHHHHHHTTSEEEEE----EC----CEEEEEEECSSEEEEEEEEETT-EEEEEEEEEEGGGEE T ss_pred HHHHHHHHCCCEEEEE----ECCCCEEEEEHHHCCCCEEEHHHHHHHH-CCCCCEEEEEECCCE T ss_conf 9999998479679999----6685215666545586367511568885-655231589853623 No 5 >>3fb9_A Uncharacterized protein; unknown function, structural genomics, MCSG, PSI2, protein structure initiative; 1.80A {Streptococcus pneumoniae TIGR4} (A:) Probab=81.87 E-value=3.8 Score=20.98 Aligned_cols=68 Identities=16% Similarity=0.304 Sum_probs=49.0 Q ss_pred HHHHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCCEEEEEECCCC-CCCCCCCEEEEEHHHHHHCCEE Q ss_conf 8999987105688987226688078999985126975999963554-5677772699768876517250 Q gi|254780789|r 106 KSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRG-EKDMNELQIAISFDSLLSARLI 173 (192) Q Consensus 106 ~~~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~~i~l~~~~~~-~k~~~~~~v~ip~~~I~kAkLv 173 (192) .+....++|+.|+++....=.....-.|+|.++=..-+++.++... .+...-..++..|.+|---... T Consensus 17 k~~l~~~vG~~V~l~an~GRkK~~~~~GvL~etYPsvFvV~ld~~~~~~~~~~~rvSYSYsDiLT~~V~ 85 (90) T 3fb9_A 17 KEEIKAHEGQVVEMTLENGRKRQKNRLGKLIEVYPSLFIVEFGDVEGDKQVNVYVESFTYSDILTEKNL 85 (90) T ss_dssp HHHHHHTTTSEEEEEECCSSSCCSCEEEEEEEECSSEEEEEESCSTTSCCSSCEEEEEEHHHHHTTSEE T ss_pred HHHHHHHCCCEEEEEECCCCCCEEEEEEEEEEECCCEEEEEECCCCCCCCCCEEEEEEEEEEEECCCEE T ss_conf 999997279889999638951279999999541562899997265677567548998886202316189 No 6 >>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster} (A:) Probab=81.78 E-value=3.4 Score=21.30 Aligned_cols=62 Identities=16% Similarity=0.144 Sum_probs=47.8 Q ss_pred HHHHCCEEEEEEECCCCCEEEEEEEEEECCCCEEEEEECCCCCC--CCCCCEEEEEHHHHHHCCEEC Q ss_conf 98710568898722668807899998512697599996355456--777726997688765172504 Q gi|254780789|r 110 LRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEK--DMNELQIAISFDSLLSARLIV 174 (192) Q Consensus 110 ~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~~i~l~~~~~~~k--~~~~~~v~ip~~~I~kAkLv~ 174 (192) ..|+|..|.+...+ ..-.|.|.+..++...|+|...=.... +....++++.-.+|..-+|+- T Consensus 8 ~~~iG~~VSI~C~~---~lGvyQG~I~~vs~q~ItL~~af~NGvPlk~~~~EVtl~a~DI~~LkiI~ 71 (103) T 2rm4_A 8 QDWIGCAVSIACDE---VLGVFQGLIKQISAEEITIVRAFRNGVPLRKQNAEVVLKCTDIRSIDLIE 71 (103) T ss_dssp GGGTTCEEEEEECT---TTCEEEEEEEEEETTEEEEEEEEETTEECSCSSSCEEEETTTEEEEEEEE T ss_pred CCCEEEEEEEEECC---CCCEEEEEEEEECCCEEEEEEHHHCCCCCCCCCCEEEEEHHHCCCEEEEE T ss_conf 26120699998779---87478789998445548984232478765568834998813221102752 No 7 >>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens} (A:) Probab=81.28 E-value=3.9 Score=20.95 Aligned_cols=60 Identities=8% Similarity=0.157 Sum_probs=48.6 Q ss_pred HHHCCEEEEEEECCCCCEEEEEEEEEECCCC--EEEEEECCCCCCCCCCCEEEEEHHHHHHCCEE Q ss_conf 8710568898722668807899998512697--59999635545677772699768876517250 Q gi|254780789|r 111 RWNGHVVACEIVLSSGDKQKLIGKIMGTSET--GFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 (192) Q Consensus 111 r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~--~i~l~~~~~~~k~~~~~~v~ip~~~I~kAkLv 173 (192) .|+|..|.+.... +.-.|.|.+..++.+ .|+|...=....+....++++.-.+|..-+|+ T Consensus 6 ~~iG~~VSi~C~~---~lGvyQG~I~~v~~~~q~ItL~~af~NGvp~~~~EVtl~a~dI~~Lkii 67 (84) T 2vc8_A 6 DWLGSIVSINCGD---SLGVYQGRVSAVDQVSQTISLTRPFHNGVKCLVPEVTFRAGDITELKIL 67 (84) T ss_dssp TTTTCEEEEECCT---TTCEEEEEEEEEETTTTEEEEEEEEETTEECSSSEEEEEGGGCSEEEEE T ss_pred CCCCEEEEEEECC---CCCEEEEEEEEECCCCCEEEEEHHHHCCCCCCCCEEEEEHHHCCCCEEE T ss_conf 1145389998579---8647888998826877679981264488778885599981311011389 No 8 >>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens} (A:73-127) Probab=76.98 E-value=2.9 Score=21.76 Aligned_cols=51 Identities=10% Similarity=0.152 Sum_probs=33.4 Q ss_pred CCEEEEEEECCCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCEEE-EEHHHHHH Q ss_conf 056889872266880789999851269759999635545677772699-76887651 Q gi|254780789|r 114 GHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIA-ISFDSLLS 169 (192) Q Consensus 114 G~~VkV~l~~~~~g~k~~~G~L~~v~~~~i~l~~~~~~~k~~~~~~v~-ip~~~I~k 169 (192) |+.|.| ++....|. .|+|.+++++.+...+.-... +.....+. +||++|.| T Consensus 2 G~~V~V-vNG~yRG~---~a~L~~i~e~~f~a~i~i~~G-p~kGr~v~~v~YEDicK 53 (55) T 2ckk_A 2 GKRILV-LNGGYRGN---EGTLESINEKTFSATIVIETG-PLKGRRVEGIQYEDISK 53 (55) T ss_dssp TCEEEE-CSSTTTTC---EEEEEEEEGGGTEEEEEECSS-TTTTCEEEEEEGGGEEE T ss_pred CCEEEE-EECCCCCC---EEEEEEEECCCCEEEEEECCC-CCCCCEEEECCHHHHHH T ss_conf 995999-85675786---999999936588899997268-87664898428899740 No 9 >>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens} (A:1-74) Probab=76.92 E-value=5.1 Score=20.19 Aligned_cols=38 Identities=11% Similarity=0.040 Sum_probs=30.4 Q ss_pred CCHHHHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCCEEEE Q ss_conf 578999987105688987226688078999985126975999 Q gi|254780789|r 104 VRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFL 145 (192) Q Consensus 104 ~~~~~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~~i~l 145 (192) +.|.+|+.|++++|+|.+.+ .+.+.|.+..+|.-...+ T Consensus 7 ~~P~~~~~yv~k~V~Vtl~d----~~~~~GwVyTvDPVS~SV 44 (74) T 1y96_A 7 KGPLEWQDYIYKEVRVTASE----KNEYKGWVLTTDPVSANI 44 (74) T ss_dssp SCHHHHHHTTTCEEEEEETT----TEEEEEEEEEECTTTCCE T ss_pred CCHHHHHHHHCCEEEEEECC----CCEEEEEEEEECCCCCEE T ss_conf 79799998639689999735----977987999968874169 No 10 >>3cw1_A Small nuclear ribonucleoprotein-associated proteins B and B; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, zinc finger, RNA recognition motif; 5.49A {Homo sapiens} (A:) Probab=74.53 E-value=6.3 Score=19.62 Aligned_cols=40 Identities=15% Similarity=0.245 Sum_probs=29.1 Q ss_pred CCHHHHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEE Q ss_conf 57899998710568898722668807899998512697-599996 Q gi|254780789|r 104 VRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEK 147 (192) Q Consensus 104 ~~~~~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~ 147 (192) .+.....+|+++.|.|+|+ +| +.|.|+|.++|.. +++|.. T Consensus 4 ~k~skL~~~in~rV~V~l~---DG-R~~~G~L~~fD~~mNlVL~d 44 (174) T 3cw1_A 4 GKSSKMLQHIDYRMRCILQ---DG-RIFIGTFKAFDKHMNLILCD 44 (174) T ss_pred CCHHHHHHHCCCEEEEEEC---CC-CEEEEEEEEECCCCCEEECC T ss_conf 6357999864987999982---99-59999999986767878627 No 11 >>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown function; 1.95A {Archaeoglobus fulgidus} (A:) Probab=72.66 E-value=4.6 Score=20.46 Aligned_cols=39 Identities=21% Similarity=0.516 Sum_probs=29.4 Q ss_pred HHHHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEE Q ss_conf 899998710568898722668807899998512697-599996 Q gi|254780789|r 106 KSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEK 147 (192) Q Consensus 106 ~~~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~ 147 (192) ..-.+.++|+.|.|+++ +|+-.+.|+|.++|+. .+.|.. T Consensus 7 ~~~L~~~~~~~V~V~lk---~g~~~~~G~L~~~D~~mNivL~d 46 (77) T 1ljo_A 7 NQMVKSMVGKIIRVEMK---GEENQLVGKLEGVDDYMNLYLTN 46 (77) T ss_dssp HHHHHHTTTSEEEEEET---TCSSEEEEEEEEECTTCCEEEEE T ss_pred HHHHHHHCCCEEEEEEE---CCCEEEEEEEEEECCCCCEEEEE T ss_conf 99998748998999997---99899999999997987269968 No 12 >>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} (A:) Probab=72.19 E-value=6.2 Score=19.67 Aligned_cols=51 Identities=16% Similarity=0.233 Sum_probs=37.0 Q ss_pred HHCCEEEEEEECCCCCEEEEEEEEEECCCC--EEEEEECCCCCCCCCCCEEEEEHHHHHHC Q ss_conf 710568898722668807899998512697--59999635545677772699768876517 Q gi|254780789|r 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSET--GFFLEKEKRGEKDMNELQIAISFDSLLSA 170 (192) Q Consensus 112 ~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~--~i~l~~~~~~~k~~~~~~v~ip~~~I~kA 170 (192) ..|..|+| ...|..| |.|++.+++.+ .+.+.++--++ ...++++|++|.|| T Consensus 6 ~~Gd~V~I-~~GpF~g---~~G~V~~id~~k~~v~V~i~~fGr----~t~vel~~~~ieKa 58 (58) T 1nz9_A 6 REGDQVRV-VSGPFAD---FTGTVTEINPERGKVKVMVTIFGR----ETPVELDFSQVVKA 58 (58) T ss_dssp CTTCEEEE-CSGGGTT---CEEEEEEEETTTTEEEEEEESSSS----EEEEEECGGGEEEC T ss_pred CCCCEEEE-CCCCCCC---CEEEEEEEECCCCEEEEEEEECCC----CCEEEECHHHEECC T ss_conf 59999999-2468999---889999990889999999982499----83373598997709 No 13 >>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=71.11 E-value=4.9 Score=20.29 Aligned_cols=50 Identities=16% Similarity=0.075 Sum_probs=38.2 Q ss_pred HHHHHCCEEEEEEECCCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCEEEEEHHHHH Q ss_conf 998710568898722668807899998512697599996355456777726997688765 Q gi|254780789|r 109 FLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLL 168 (192) Q Consensus 109 f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~~i~l~~~~~~~k~~~~~~v~ip~~~I~ 168 (192) -.+++|+.|+|+ ..+..| +.|++..++++.+.+++.... ..++++-+.|. T Consensus 16 ~d~liGktV~I~-~G~yKG---~~G~Vkd~t~~~~rVeLhs~~------K~v~V~r~~l~ 65 (71) T 2e70_A 16 DNELIGQTVRIS-QGPYKG---YIGVVKDATESTARVELHSTC------QTISVDRQRLT 65 (71) T ss_dssp TTSSTTSEEEEC-SSTTTT---CEEEEEEECSSCEEEEESSSC------CEEEECTTTEE T ss_pred CCCCCCCEEEEE-ECCCCC---EEEEEEECCCCEEEEEECCCC------EEEEEEHHHEE T ss_conf 644458889996-527688---788999652886999983688------49998978836 No 14 >>3cw1_F Small nuclear ribonucleoprotein F; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, zinc finger, RNA recognition motif; 5.49A {Homo sapiens} (F:) Probab=70.83 E-value=7.7 Score=19.08 Aligned_cols=43 Identities=14% Similarity=0.157 Sum_probs=31.8 Q ss_pred CCCCCHHHHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEE Q ss_conf 74457899998710568898722668807899998512697-599996 Q gi|254780789|r 101 RPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEK 147 (192) Q Consensus 101 RpL~~~~~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~ 147 (192) .|..-..-.+.++|+.|.|.+++ .+.+.|+|.++|.. .+.|.. T Consensus 3 ~~~~p~~~L~~~~g~~V~V~l~~----g~~~~G~L~~~D~~mNivL~~ 46 (86) T 3cw1_F 3 LPLNPKPFLNGLTGKPVMVKLKW----GMEYKGYLVSVDGYMNMQLAN 46 (86) T ss_pred CCCCHHHHHHHHCCCEEEEEEEC----CEEEEEEEEEECCCCEEEEEE T ss_conf 45588999987579789999959----919998789894887169912 No 15 >>3cw1_G Small nuclear ribonucleoprotein G; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, zinc finger, RNA recognition motif; 5.49A {Homo sapiens} (G:) Probab=68.14 E-value=8.2 Score=18.90 Aligned_cols=38 Identities=5% Similarity=0.197 Sum_probs=28.9 Q ss_pred HHHHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEE Q ss_conf 899998710568898722668807899998512697-599996 Q gi|254780789|r 106 KSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEK 147 (192) Q Consensus 106 ~~~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~ 147 (192) ..-.+.++|+.|.|++++ .+.+.|+|.++|.. .+.|.. T Consensus 6 ~~~L~~~~g~~v~V~lk~----g~~~~G~L~~~D~~mNlvL~~ 44 (76) T 3cw1_G 6 PPELKKFMDKKLSLKLNG----GRHVQGILRGFDPFMNLVIDE 44 (76) T ss_pred CHHHHHHCCCCEEEEECC----CCEEEEEEEEECCCCCEEEEE T ss_conf 767998679819999889----939999999985856479986 No 16 >>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, homomeric, octamer, cytoplasm; 2.50A {Saccharomyces cerevisiae} (A:) Probab=67.53 E-value=6.1 Score=19.72 Aligned_cols=36 Identities=11% Similarity=0.049 Sum_probs=28.3 Q ss_pred HHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEE Q ss_conf 9998710568898722668807899998512697-599996 Q gi|254780789|r 108 DFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEK 147 (192) Q Consensus 108 ~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~ 147 (192) -+..++|+.|.|.|++ .+.+.|+|.++|.. ++.|.. T Consensus 14 ~L~~~l~~~V~V~l~d----g~~~~G~L~~~D~~mNlvL~d 50 (96) T 3bw1_A 14 LLKLNLDERVYIKLRG----ARTLVGTLQAFDSHCNIVLSD 50 (96) T ss_dssp HHGGGTTSEEEEEEGG----GCEEEEEEEEECTTCCEEEEE T ss_pred HHHHHCCCEEEEEECC----CCEEEEEEEEECCCCCEEECC T ss_conf 9998789869999929----919999999988999729884 No 17 >>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet in the heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} (A:) Probab=67.19 E-value=7.6 Score=19.12 Aligned_cols=37 Identities=14% Similarity=0.201 Sum_probs=28.5 Q ss_pred HHHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEE Q ss_conf 99998710568898722668807899998512697-599996 Q gi|254780789|r 107 SDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEK 147 (192) Q Consensus 107 ~~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~ 147 (192) .-+..++|+.|.|+|++ .+.+.|+|.++|.. .+.|.. T Consensus 14 ~~L~~~~~~~V~V~l~~----g~~~~G~L~~~D~~mNlvL~~ 51 (81) T 1i8f_A 14 ATLQDSIGKQVLVKLRD----SHEIRGILRSFDQHVNLLLED 51 (81) T ss_dssp HHHHTTTTSEEEEEEGG----GEEEEEEEEEECTTCCEEEEE T ss_pred HHHHHHCCCEEEEEECC----CCEEEEEEEEECCCCCEEECC T ss_conf 99998669979999959----919999999976997749958 No 18 >>1d3b_B Protein (small nuclear ribonucleoprotein associated protein B); snRNP, splicing, core snRNP domain, systemic lupus erythematosus, SLE; HET: CIT; 2.00A {Homo sapiens} (B:) Probab=66.98 E-value=7 Score=19.33 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=27.1 Q ss_pred HHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEE Q ss_conf 998710568898722668807899998512697-599996 Q gi|254780789|r 109 FLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEK 147 (192) Q Consensus 109 f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~ 147 (192) .+.++|+.|.|+++. .+.|.|+|.++|.. .++|.. T Consensus 9 L~~~l~~~V~V~l~~----gr~~~G~L~~~D~~~NlvL~d 44 (91) T 1d3b_B 9 MLQHIDYRMRCILQD----GRIFIGTFKAFDKHMNLILCD 44 (91) T ss_dssp CGGGTTSEEEEEETT----CCEEEEEEEECCTTCCEEEEE T ss_pred HHHHCCCEEEEEECC----CCEEEEEEEEECCCCCEEEEC T ss_conf 998739879999859----969999999986757879716 No 19 >>3cw1_E Small nuclear ribonucleoprotein E; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, zinc finger, RNA recognition motif; 5.49A {Homo sapiens} (E:) Probab=65.45 E-value=9.9 Score=18.40 Aligned_cols=44 Identities=16% Similarity=0.153 Sum_probs=31.7 Q ss_pred CCCCCCHHHH-HHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEE Q ss_conf 7744578999-98710568898722668807899998512697-599996 Q gi|254780789|r 100 DRPMVRKSDF-LRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEK 147 (192) Q Consensus 100 dRpL~~~~~f-~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~ 147 (192) ..|+..+-.| ..++|+.|.|++++ .+.+.|+|.++|+. .+.|.. T Consensus 15 ~~~~~~~~~~L~~~~~~~V~V~l~~----g~~~~G~L~~~D~~mNlvL~d 60 (92) T 3cw1_E 15 VQPINLIFRYLQNRSRIQVWLYEQV----NMRIEGCIIGFDEYMNLVLDD 60 (92) T ss_pred CCCHHHHHHHHHHCCCEEEEEEECC----CEEEEEEEEEECCCCEEEEEC T ss_conf 5988999999962787899999479----829999999986750799824 No 20 >>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} (A:) Probab=64.62 E-value=8 Score=18.98 Aligned_cols=37 Identities=14% Similarity=0.054 Sum_probs=28.5 Q ss_pred HHHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEE Q ss_conf 99998710568898722668807899998512697-599996 Q gi|254780789|r 107 SDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEK 147 (192) Q Consensus 107 ~~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~ 147 (192) .-...++|+.|.|++++ .+.+.|+|.++|.. .+.|.. T Consensus 7 ~~L~~~~~~~V~V~l~~----g~~~~G~L~~~D~~mNivL~~ 44 (77) T 1i4k_A 7 DVLNRSLKSPVIVRLKG----GREFRGTLDGYDIHMNLVLLD 44 (77) T ss_dssp HHHHTTTTSEEEEEETT----SCEEEEEEEEECTTCCEEEEE T ss_pred HHHHHHCCCEEEEEECC----CCEEEEEEEEECCCCCEEEEE T ss_conf 99987589989999869----989999999997988379978 No 21 >>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein; heptamer, translation; 2.80A {Saccharomyces cerevisiae} (A:) Probab=64.42 E-value=8.7 Score=18.74 Aligned_cols=37 Identities=14% Similarity=0.223 Sum_probs=28.2 Q ss_pred HHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEE Q ss_conf 9998710568898722668807899998512697-599996 Q gi|254780789|r 108 DFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEK 147 (192) Q Consensus 108 ~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~ 147 (192) .++.++|+.|.|+|+. +.+.+.|+|.++|.. .+.|.. T Consensus 25 ~L~~~~~~~V~V~Lk~---ng~~~~G~L~~~D~~mNlvL~d 62 (93) T 1n9r_A 25 FLKGLVNHRVGVKLKF---NSTEYRGTLVSTDNYFNLQLNE 62 (93) T ss_dssp -CGGGTTSEEEEEESS---TTEEEEEEEEECCTTTCEEEEE T ss_pred HHHHCCCCEEEEEEEC---CCEEEEEEEEEECCCCEEEEEE T ss_conf 9986089879999974---9999999999985887059924 No 22 >>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} (A:) Probab=63.21 E-value=11 Score=18.14 Aligned_cols=38 Identities=8% Similarity=0.113 Sum_probs=30.0 Q ss_pred HHHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEEC Q ss_conf 99998710568898722668807899998512697-5999963 Q gi|254780789|r 107 SDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEKE 148 (192) Q Consensus 107 ~~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~~ 148 (192) ..++.++|+.|.|++++ .+.+.|+|.++|.. .++|... T Consensus 12 ~~L~~~~~~~V~V~l~~----g~~~~G~L~~~D~~mNivL~d~ 50 (81) T 1th7_A 12 KVLAESLNNLVLVKLKG----NKEVRGMLRSYDQHMNLVLSDS 50 (81) T ss_dssp HHHHHHTTSEEEEEETT----TEEEEEEEEEECTTCCEEEEEE T ss_pred HHHHHHCCCEEEEEECC----CCEEEEEEEEECCCCCEEEEEE T ss_conf 99998779859999879----9699999999868772798029 No 23 >>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} (1:) Probab=61.27 E-value=12 Score=17.92 Aligned_cols=36 Identities=14% Similarity=0.094 Sum_probs=28.0 Q ss_pred HHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEE Q ss_conf 9998710568898722668807899998512697-599996 Q gi|254780789|r 108 DFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEK 147 (192) Q Consensus 108 ~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~ 147 (192) -.++++|+.|.|+++. .+.+.|+|.++|.. .+.|.. T Consensus 8 ~L~~~~~~~V~V~l~~----g~~~~G~L~~~D~~mNlvL~~ 44 (75) T 1h64_1 8 VIHRSLDKDVLVILKK----GFEFRGRLIGYDIHLNVVLAD 44 (75) T ss_dssp HHHTTTTSEEEEEETT----SEEEEEEEEEECTTCCEEEEE T ss_pred HHHHHCCCEEEEEECC----CCEEEEEEEEECCCCCEEEEE T ss_conf 9987489879999959----979999999997888479988 No 24 >>2hbp_A Cytoskeleton assembly control protein SLA1; SHD1, NPFX(1,2)D, endocytosis, protein binding; NMR {Saccharomyces cerevisiae} (A:) Probab=60.05 E-value=3.2 Score=21.43 Aligned_cols=55 Identities=20% Similarity=0.335 Sum_probs=35.5 Q ss_pred CCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCEEEEEHHHHHHCCEECCHHHHHHHHHCC Q ss_conf 68807899998512697599996355456777726997688765172504699999999607 Q gi|254780789|r 125 SGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNY 186 (192) Q Consensus 125 ~~g~k~~~G~L~~v~~~~i~l~~~~~~~k~~~~~~v~ip~~~I~kAkLv~~d~l~~~~~~~~ 186 (192) ..|+-++.+.++++.++.|.|.... ...+.+|++..+.+-+.+-+++-+.+++.+ T Consensus 11 ~~G~f~veA~fv~~~~~~V~L~k~n-------G~~i~VPl~kLS~~Dq~~ve~~t~~~~e~~ 65 (68) T 2hbp_A 11 RSGTFKVDAEFIGCAKGKIHLHKAN-------GVKIAVAADKLSNEDLAYVEKITGFSLEKF 65 (68) T ss_dssp SSSCCEEEEEEEEEETTEEEEECTT-------SCEEEEETTSBCHHHHHHHHHHHSCCCGGG T ss_pred CCCCEEEEEEEEEEECCEEEEEECC-------CEEEEEEHHHCCHHHHHHHHHHHCCCCHHH T ss_conf 8999899999998629999999749-------979997959979989999999863661222 No 25 >>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} (A:) Probab=59.80 E-value=12 Score=17.76 Aligned_cols=38 Identities=8% Similarity=0.003 Sum_probs=29.5 Q ss_pred HHHHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEE Q ss_conf 899998710568898722668807899998512697-599996 Q gi|254780789|r 106 KSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEK 147 (192) Q Consensus 106 ~~~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~ 147 (192) .....+++|+.|.|.+++ .+.+.|+|.++|.. .+.|.. T Consensus 17 ~~~L~~~~~~~V~V~l~~----g~~~~G~L~~~D~~mNivL~~ 55 (83) T 1mgq_A 17 LDALGNSLNSPVIIKLKG----DREFRGVLKSFDLHMNLVLND 55 (83) T ss_dssp THHHHHTTTSEEEEEETT----TEEEEEEEEEECTTCCEEEEE T ss_pred HHHHHHHCCCEEEEEECC----CCEEEEEEEEECCCCCEEEEE T ss_conf 899998589979999879----999999999988999769911 No 26 >>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus erythematosus, SLE; HET: CIT; 2.00A {Homo sapiens} (A:) Probab=59.66 E-value=13 Score=17.75 Aligned_cols=38 Identities=18% Similarity=0.340 Sum_probs=28.8 Q ss_pred HHHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEEC Q ss_conf 99998710568898722668807899998512697-5999963 Q gi|254780789|r 107 SDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEKE 148 (192) Q Consensus 107 ~~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~~ 148 (192) .-++.++|+.|.|++++ .+.+.|+|.++|.. .+.|... T Consensus 8 ~~L~~~~g~~V~V~l~~----g~~~~G~L~~~D~~mNi~L~~~ 46 (75) T 1d3b_A 8 KVLHEAEGHIVTCETNT----GEVYRGKLIEAEDNMNCQMSNI 46 (75) T ss_dssp HHHHHTTTSEEEEEETT----SCEEEEEEEEECTTCCEEEEEE T ss_pred HHHHHCCCCEEEEEECC----CEEEEEEEEEECCCCEEEEEEE T ss_conf 99976589989999899----8399999998969963999899 No 27 >>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} (A:) Probab=56.13 E-value=8.3 Score=18.87 Aligned_cols=38 Identities=13% Similarity=0.172 Sum_probs=28.8 Q ss_pred HHH-HHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEE Q ss_conf 899-998710568898722668807899998512697-599996 Q gi|254780789|r 106 KSD-FLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEK 147 (192) Q Consensus 106 ~~~-f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~ 147 (192) |.+ ..+++|+.|.|+|++ .+.|.|+|.++|.. .+.|.. T Consensus 29 p~~~L~~~l~k~V~V~l~~----gr~~~G~L~~~D~~~NlvL~d 68 (121) T 2fwk_A 29 PLALIDKCIGNRIYVVMKG----DKEFSGVLRGFDEYVNMVLDD 68 (121) T ss_dssp HHHHHHHTBTSBCEEEETT----TEEECCEEEEECTTCCEEEES T ss_pred HHHHHHHHCCCEEEEEECC----CCEEEEEEEEECCCCCEEEEE T ss_conf 3999998789879999879----989999999987999839911 No 28 >>3cw1_D Small nuclear ribonucleoprotein SM D3; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, zinc finger, RNA recognition motif; 5.49A {Homo sapiens} (D:) Probab=48.24 E-value=19 Score=16.60 Aligned_cols=38 Identities=21% Similarity=0.437 Sum_probs=28.2 Q ss_pred CCCCHHHHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEE Q ss_conf 4457899998710568898722668807899998512697-59999 Q gi|254780789|r 102 PMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLE 146 (192) Q Consensus 102 pL~~~~~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~ 146 (192) ||+. ....+|+.|.|+|+. ...+.|+|.++|+. .+.|. T Consensus 6 Pl~l---L~~~~g~~V~VeLkn----g~~~~G~L~~~D~~MNi~L~ 44 (126) T 3cw1_D 6 PIKV---LHEAEGHIVTCETNT----GEVYRGKLIEAEDNMNCQMS 44 (126) T ss_pred HHHH---HHHHCCCEEEEEECC----CEEEEEEEEEECCCCEEEEE T ss_conf 7999---987179989999899----71999999987488478998 No 29 >>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=46.63 E-value=20 Score=16.44 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=34.9 Q ss_pred HCCEEEEEEECCCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCEEEEEHHHHHH Q ss_conf 105688987226688078999985126975999963554567777269976887651 Q gi|254780789|r 113 NGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLS 169 (192) Q Consensus 113 ~G~~VkV~l~~~~~g~k~~~G~L~~v~~~~i~l~~~~~~~k~~~~~~v~ip~~~I~k 169 (192) .|-.|.|-- ..++...|+..+++++.|++......- +..+.+|-.+.+| T Consensus 10 pGD~VeV~~----GEl~~l~G~V~sv~gd~Vti~p~~~dL----~~~l~~p~~~LRK 58 (59) T 2e6z_A 10 PGDNVEVCE----GELINLQGKILSVDGNKITIMPKHEDL----KDMLEFPAQELRK 58 (59) T ss_dssp TTSEEEECS----STTTTCEEEECCCBTTEEEEEECCSSC----CSCEEEETTTEEE T ss_pred CCCEEEEEC----CEECCCEEEEEEECCCEEEEEECCCCC----CCEEECCHHHCCC T ss_conf 999899922----775377999999709989998764236----8615416798336 No 30 >>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemic lupus erythematosus, SLE; 2.50A {Homo sapiens} (B:) Probab=44.83 E-value=22 Score=16.27 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=26.9 Q ss_pred HHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEE Q ss_conf 998710568898722668807899998512697-599996 Q gi|254780789|r 109 FLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEK 147 (192) Q Consensus 109 f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~ 147 (192) ...++++.|.|.|+. .+.|.|+|.++|.. .+.|.. T Consensus 34 l~~~~~k~V~V~L~~----gr~~~G~L~~fD~~mNlvL~d 69 (118) T 1b34_B 34 QSVKNNTQVLINCRN----NKKLLGRVKAFDRHCNMVLEN 69 (118) T ss_dssp HHHHHTCEEEEEETT----SCEEEEEEEEECTTCCEEEEE T ss_pred HHHHCCCEEEEEECC----CCEEEEEEEEECCCCEEEEEC T ss_conf 999769789999779----959999999971000267303 No 31 >>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemic lupus erythematosus, SLE; 2.50A {Homo sapiens} (A:) Probab=43.96 E-value=22 Score=16.18 Aligned_cols=62 Identities=16% Similarity=0.135 Sum_probs=37.0 Q ss_pred HHHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEECCCCCC---CCCCCEEEEEHHHHHHCCE Q ss_conf 99998710568898722668807899998512697-599996355456---7777269976887651725 Q gi|254780789|r 107 SDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEKEKRGEK---DMNELQIAISFDSLLSARL 172 (192) Q Consensus 107 ~~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~~~~~~k---~~~~~~v~ip~~~I~kAkL 172 (192) .-+..++|+.|.|.|++ ...|.|+|.++|+. .+.|........ ...-..+-|-=+.|....+ T Consensus 5 ~~L~~~~g~~V~V~l~n----g~~~~G~L~~~D~~mNi~L~~~~~~~~~~~~~~~~~v~IRG~~I~~i~~ 70 (119) T 1b34_A 5 RFLMKLSHETVTIELKN----GTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFIL 70 (119) T ss_dssp HHHHTCTTCEEEEEETT----CCEEEEEEEEECTTCCEEEEEEEEECTTSCCEEEEEEEECGGGEEEEEC T ss_pred HHHHHCCCCEEEEEECC----CCEEEEEEEEECCCCEEEEEEEEEECCCCCEEECCCEEECCCEEEEEEC T ss_conf 99987589869999889----9599999998869926899799999899968874768987987999987 No 32 >>1gtd_A MTH169; synthetase, FGAM synthetase, purine synthesis pathway, PSI, protein structure initiative, NESG; 2.56A {Methanobacterium thermoautotrophicum} (A:) Probab=40.83 E-value=25 Score=15.88 Aligned_cols=70 Identities=9% Similarity=0.181 Sum_probs=42.4 Q ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE Q ss_conf 4127999999999999747977999999549986899999658778789999999999875202113567650799972 Q gi|254780789|r 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSS 96 (192) Q Consensus 18 ~~~i~~~i~~li~p~v~~lG~eLv~v~~~~~~~~~LrI~ID~~dg~i~iddC~~vSr~i~~~LD~~d~i~~~Y~LEVSS 96 (192) ++++-+.=-..+...+..+||++-+|.+- +.+.+.+|.++..--.+. +....... -.+|+-++|..+|.- T Consensus 12 K~gVlDPqG~aI~~aL~~lG~~V~~VRvG----K~iel~i~~~~~e~a~~~---v~~~c~~l--LaNpvIE~y~i~i~e 81 (85) T 1gtd_A 12 KKGXLNPEAATIERALALLGYEVEDTDTT----DVITFTXDEDSLEAVERE---VEDXCQRL--LCNPVIHDYDVSINE 81 (85) T ss_dssp CTTSCCHHHHHHHHHHHHHTCCCEEEEEE----EEEEEEECCSCHHHHHHH---HHHHHHHT--TCCTTTEEEEEEEEE T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCEEEEE----EEEEEEECCCCHHHHHHH---HHHHHHHH--CCCCCEEEEEEEEEE T ss_conf 89773848999999998659863047876----699999778998999999---99999986--397654789999996 No 33 >>2fyx_A Transposase, putative; 6457846, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 1.90A {Deinococcus radiodurans R1} (A:23-143) Probab=39.75 E-value=26 Score=15.78 Aligned_cols=102 Identities=8% Similarity=0.159 Sum_probs=65.2 Q ss_pred HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCC Q ss_conf 0113337610014127999999999999747977999999549986899999658778789999999999875202-113 Q gi|254780789|r 6 FLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD-VEN 84 (192) Q Consensus 6 ~~~~~~~~r~~~~~~i~~~i~~li~p~v~~lG~eLv~v~~~~~~~~~LrI~ID~~dg~i~iddC~~vSr~i~~~LD-~~d 84 (192) .++++|-..++. ..+.+++.+++..+++..|+++..++... + -+-++++-+- .+++-+....=+..|...= .+. T Consensus 6 V~~tKyR~~vl~-~~i~~~l~~~i~~i~~~~~~~i~~~~~~~--D-HVHllv~~~P-~~sis~~i~~lKg~Ssr~i~~~~ 80 (121) T 2fyx_A 6 IWATKYRHQVLV-DEVADGLKDILRDIATQNGLELVALEVMP--D-YVHLLLGATP-QHVIPDFVKALKGASARRMFSAF 80 (121) T ss_dssp EEECGGGCCCCC-HHHHHHHHHHHHHHHHHTTCEEEEEEECS--S-EEEEEEEECT-TCCHHHHHHHHHHHHHHHHHHHC T ss_pred EECCCCCHHHCC-HHHHHHHHHHHHHHHHHCCCEEEECCCCC--C-CCEEEEECCC-CCCHHHHHHHHCCHHHHHHHHHC T ss_conf 981377404236-89999999999999975585033324567--7-6216885287-76518999987023788999867 Q ss_pred -----------CCCCCCEEEEEECCCCCCCCCHHHHHHHHCC Q ss_conf -----------5676507999727887744578999987105 Q gi|254780789|r 85 -----------IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGH 115 (192) Q Consensus 85 -----------~i~~~Y~LEVSSPGidRpL~~~~~f~r~~G~ 115 (192) .-...|. |+|-|- -++-..++|-++.+. T Consensus 81 ~~~~k~~~~~~~W~~gYf--~~svg~-~~~~~i~~YI~~Q~~ 119 (121) T 2fyx_A 81 PHLKQPHWGGNLWNPSYC--VLTVSE-HTRAQIQQYIENQHA 119 (121) T ss_dssp GGGCCGGGTTSSCCSCEE--EECCCT-THHHHHHHHHHTSCC T ss_pred CCCCHHCCCCCEECCCEE--EEECCC-CCHHHHHHHHHHCCC T ss_conf 421000345550048678--990388-889999999980086 No 34 >>1qd1_A Formiminotransferase-cyclodeaminase; functional dimer, alpha-beta-BETA-alpha sandwich, electrostatically charged substrate tunnel; HET: FON; 1.70A {Sus scrofa} (A:1-179) Probab=34.51 E-value=28 Score=15.56 Aligned_cols=50 Identities=16% Similarity=0.205 Sum_probs=29.2 Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCC-CCC--HHHHHHH Q ss_conf 78789999999999875202113567650799972788774-457--8999987 Q gi|254780789|r 62 GNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRP-MVR--KSDFLRW 112 (192) Q Consensus 62 g~i~iddC~~vSr~i~~~LD~~d~i~~~Y~LEVSSPGidRp-L~~--~~~f~r~ 112 (192) +++|+++|+.+++.+...+-.+--++- |.-|-+.+--+|. |-. ..+|+-+ T Consensus 96 ~~~t~eec~~lA~~~g~~i~~~l~vPV-yLYg~Aa~~~~r~~l~~iR~G~~e~l 148 (179) T 1qd1_A 96 RGVTMDECVRCAQAFGQRLAEELGVPV-YLYGEAARTAGRQSLPALRAGEYEAL 148 (179) T ss_dssp ESCCHHHHHHHHHHHHHHHHHHHTCCE-EEEETTCSSGGGSCHHHHHTTHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCE-EEECCCCCCCCCCCHHHHHHCCEECC T ss_conf 999989999999999999987429857-98602027953133789973255533 No 35 >>1ug7_A 2610208M17RIK protein; hypothetical protein FLJ12806, four helical UP-and-DOWN bundle, structural genomics; NMR {Mus musculus} (A:) Probab=33.96 E-value=26 Score=15.80 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=24.7 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 5877878999999999987520211356765 Q gi|254780789|r 59 RDDGNMTLRDCEELSQAISPILDVENIIEGH 89 (192) Q Consensus 59 ~~dg~i~iddC~~vSr~i~~~LD~~d~i~~~ 89 (192) ..+| ++++||-++--.+..+|+...+||-+ T Consensus 89 ~~~~-i~ledlkkL~p~l~~ll~~~~eFP~d 118 (128) T 1ug7_A 89 SQEE-FKLEDLKKLEPILKNILTYNKEFPFD 118 (128) T ss_dssp CCCS-CCSHHHHTHHHHHHTTTTCCSCCSSC T ss_pred CCCC-CCHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 5677-57999998999999773028898740 No 36 >>1dpg_A G6PD, glucose 6-phosphate dehydrogenase; oxidoreductase, NADP/NAD, glucose metabolism, oxidoreductase (CHOH(D) - NAD(P)); 2.00A {Leuconostoc mesenteroides} (A:1-182) Probab=33.57 E-value=33 Score=15.17 Aligned_cols=34 Identities=15% Similarity=0.330 Sum_probs=30.4 Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCC Q ss_conf 89999965877878999999999987520211356 Q gi|254780789|r 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 (192) Q Consensus 52 ~LrI~ID~~dg~i~iddC~~vSr~i~~~LD~~d~i 86 (192) ..||.+++|=| -+++.+.++++.|...++++.++ T Consensus 141 ~~RiviEKPfG-~dl~Sa~~ln~~l~~~f~E~qiy 174 (182) T 1dpg_A 141 YNRLMIEKPFG-TSYDTAAELQNDLENAFDDNQLF 174 (182) T ss_dssp CEEEEECSCCC-SSHHHHHHHHHHHTTTCCGGGEE T ss_pred CEEEEEECCCC-CCHHHHHHHHHHHHHHCCHHHEE T ss_conf 55899868887-85361999999998658997830 No 37 >>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase/antibiotic complex; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A* (A:1-159) Probab=31.97 E-value=23 Score=16.14 Aligned_cols=46 Identities=15% Similarity=0.065 Sum_probs=29.5 Q ss_pred CCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC--CEEEEEEEEC Q ss_conf 9620101133376100141279999999999997479--7799999954 Q gi|254780789|r 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMS--FRSVQISLLE 47 (192) Q Consensus 1 ~~~~~~~~~~~~~r~~~~~~i~~~i~~li~p~v~~lG--~eLv~v~~~~ 47 (192) |-|||- ||+++...|..........++++-+++.+. ..+..|-+.| T Consensus 1 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~i~~~l~~~~~v~av~L~G 48 (159) T 3jz0_A 1 MGSSHH-HHHHSSGLVPRGSHMLKQKELIANVKNLTESDERITACMMYG 48 (159) T ss_dssp ----------------------CHHHHHHHHHHHHHHHCTTEEEEEECS T ss_pred CCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC T ss_conf 997544-433334567441202129999999999970390369999876 No 38 >>2bh9_A G6PD, glucose-6-phosphate 1-dehydrogenase; oxidoreductase, oxidoreductase (CHOH(D)-NADP), carbohydrate metabolism, glucose metabolism; HET: NAP; 2.5A {Homo sapiens} PDB: 2bhl_A* 1qki_A* (A:1-178) Probab=29.36 E-value=38 Score=14.73 Aligned_cols=36 Identities=28% Similarity=0.337 Sum_probs=31.2 Q ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCC Q ss_conf 8689999965877878999999999987520211356 Q gi|254780789|r 50 NLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 (192) Q Consensus 50 ~~~LrI~ID~~dg~i~iddC~~vSr~i~~~LD~~d~i 86 (192) +...||.+++|=| -+++-+..+++.|...++++.++ T Consensus 136 ~~~~RiviEKPfG-~dl~Sa~~Ln~~l~~~f~E~qIy 171 (178) T 2bh9_A 136 IGWNRIIVEKPFG-RDLQSSDRLSNHISSLFREDQIY 171 (178) T ss_dssp SSCEEEEECSCSC-SSHHHHHHHHHHHTTTSCGGGEE T ss_pred CCCCEEEEECCCC-CCHHHHHHHHHHHHHHCCCCHHC T ss_conf 6762167614433-56787999999999656850120 No 39 >>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} (A:272-321) Probab=27.40 E-value=41 Score=14.51 Aligned_cols=45 Identities=18% Similarity=0.161 Sum_probs=29.6 Q ss_pred HCCEEEEEEECCCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCEEEE Q ss_conf 10568898722668807899998512697599996355456777726997 Q gi|254780789|r 113 NGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAI 162 (192) Q Consensus 113 ~G~~VkV~l~~~~~g~k~~~G~L~~v~~~~i~l~~~~~~~k~~~~~~v~i 162 (192) +|+.|++.+ +...+.|+-.++++++-.+-....+.+...-.++++ T Consensus 1 lGk~V~i~~-----~~~~~~G~a~gId~~G~Llv~~~~g~~~~~sGEVSl 45 (50) T 1bia_A 1 INRPVKLII-----GDKEIFGISRGIDKQGALLLEQDGIIKPWMGGEISL 45 (50) T ss_dssp TTSEEEEEE-----TTEEEEEEEEEECTTSCEEEEETTEEEEESSCEEEE T ss_pred CCCEEEEEE-----CCEEEEEEEEEECCCCEEEEEECCEEEEEEEEEEEE T ss_conf 498699997-----997999999999989829999999199999889998 No 40 >>2vs7_A I-DMOI, homing endonuclease I-DMOI; protein/nucleic acid crystallography; 2.05A {Desulfurococcus mobilis} PDB: 2vs8_A 1b24_A (A:121-199) Probab=27.23 E-value=21 Score=16.36 Aligned_cols=36 Identities=17% Similarity=0.091 Sum_probs=20.7 Q ss_pred HHHHHHHHHHHHHHHC-----CCCCCCCCCEEEEEECCCCC Q ss_conf 9999999999875202-----11356765079997278877 Q gi|254780789|r 66 LRDCEELSQAISPILD-----VENIIEGHYRLEVSSPGIDR 101 (192) Q Consensus 66 iddC~~vSr~i~~~LD-----~~d~i~~~Y~LEVSSPGidR 101 (192) .--.+-||+.+++.=- .+|---+-|.||||||--.| T Consensus 12 ~~LLelV~~WL~~lGi~~tihLDD~RHGVYVL~v~~~~R~r 52 (79) T 2vs7_A 12 KALLEIVSRWLNNLGVRNTIHLDDHRHGVYVLNISLRDRIK 52 (79) T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEECGGGHHH T ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEECCHHHHH T ss_conf 99999999999986975899970377866999977816678 No 41 >>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken structural genomics/proteomics initiative, RSGI, antitumor protein; NMR {Homo sapiens} (A:) Probab=26.07 E-value=38 Score=14.78 Aligned_cols=41 Identities=20% Similarity=-0.008 Sum_probs=33.7 Q ss_pred HHHCCEEEEEEECCCCCEEEEEEEEEECCCCEEEEEECCCC Q ss_conf 87105688987226688078999985126975999963554 Q gi|254780789|r 111 RWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRG 151 (192) Q Consensus 111 r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~~i~l~~~~~~ 151 (192) -.+|..|.|.-..+..|.=+|.|.+....+..+-++++.+. T Consensus 18 ~~vG~rV~v~~~~~~~G~vryiG~~~~~~g~~vGVElD~p~ 58 (104) T 1ixd_A 18 LEVGSLAEVKENPPFYGVIRWIGQPPGLNEVLAGLELEDEC 58 (104) T ss_dssp CCTTSEEEECSSSCCCEEEEEEECCSSSCCCEEEEEESSCC T ss_pred CCCCCEEEECCCCCCEEEEEEEECCCCCCCCEEEEEECCCC T ss_conf 82689889899896079998973689989738999966888 No 42 >>2yx5_A UPF0062 protein MJ1593; anti parallel beta sheet, NPPSFA, national project on protein structural and functional analyses; 2.30A {Methanocaldococcus jannaschii} (A:) Probab=23.58 E-value=46 Score=14.24 Aligned_cols=69 Identities=17% Similarity=0.351 Sum_probs=39.9 Q ss_pred CCCHHHHHHHHHHHHHHHCCCE-EEEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE Q ss_conf 4127999999999999747977-99999954998689999965877878999999999987520211356765079997 Q gi|254780789|r 18 DMGLAGDISSVIQPVIEEMSFR-SVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVS 95 (192) Q Consensus 18 ~~~i~~~i~~li~p~v~~lG~e-Lv~v~~~~~~~~~LrI~ID~~dg~i~iddC~~vSr~i~~~LD~~d~i~~~Y~LEVS 95 (192) ++++-+.--+.+...+..+||. +-+|. -++.+.+.++..+..-..+....+.+. | -.+|+-+.|..+|+ T Consensus 11 K~gVlDPqG~ai~~al~~lG~~~V~~vR----vgK~~~~~i~~~~~e~a~~~v~~i~~~----L-LaNpvIe~y~i~i~ 80 (83) T 2yx5_A 11 KKGVLNPEGRTIQRALNFLGFNNVKEVQ----TYKMIDIIMEGENEEKVKEEVEEMCKK----L-LANPVIHDYEIKVE 80 (83) T ss_dssp CTTCCCHHHHHHHHHHHHTTCTTCCCCC----CCEEEEEEEC-CCHHHHHHHHHHHHHH----T-TCCTTTEEEEEEEE T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCEEE----EEEEEEEEECCCCHHHHHHHHHHHHHH----H-CCCCCEEEEEEEEE T ss_conf 9977382799999999864975666357----555999998579989999999999998----6-39864378999999 No 43 >>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} (B:194-274) Probab=22.81 E-value=40 Score=14.61 Aligned_cols=19 Identities=21% Similarity=0.518 Sum_probs=13.9 Q ss_pred CCCCCCCCEEEEEECCCCC Q ss_conf 1356765079997278877 Q gi|254780789|r 83 ENIIEGHYRLEVSSPGIDR 101 (192) Q Consensus 83 ~d~i~~~Y~LEVSSPGidR 101 (192) .++-++.|.|.||.+|... T Consensus 45 ~~l~~G~Y~l~vs~~Gy~~ 63 (81) T 1ti6_B 45 DALDNGEYTVEIDADGKSY 63 (81) T ss_dssp EEECSEEEEEEEEETTEEE T ss_pred CCCCCCEEEEEEEECCCCE T ss_conf 6514860699998278760 No 44 >>1uty_A Non-structural protein 2; viral protein, RNA binding protein; 2.4A {Bluetongue virus} (A:) Probab=21.94 E-value=21 Score=16.32 Aligned_cols=36 Identities=28% Similarity=0.367 Sum_probs=25.7 Q ss_pred HHHHHHHHHHH-----------HHC-CCCCCCCCCEEEEEECCCCCCC Q ss_conf 99999999875-----------202-1135676507999727887744 Q gi|254780789|r 68 DCEELSQAISP-----------ILD-VENIIEGHYRLEVSSPGIDRPM 103 (192) Q Consensus 68 dC~~vSr~i~~-----------~LD-~~d~i~~~Y~LEVSSPGidRpL 103 (192) -|-.+++..+. .+. +..|.+..|.|||+-||.-|-. T Consensus 22 ~cG~iak~~~~~Y~qVKiGr~~~~~~v~~P~Pk~yVleI~~~gayRIq 69 (187) T 1uty_A 22 LCGAIAKLSSQPYCQIKIGRVVAFKPVKNPEPKGYVLNVPGPGAYRIQ 69 (187) T ss_dssp HHHHHHHHTTCSEEEEEESSSCEEEEESSCCTTCEEEECSSSEEEEEE T ss_pred HHHHHHHHHCCCEEEEEECCEEEEEECCCCCCCEEEEEECCCCEEEEE T ss_conf 689999862797089997457886261899997389993688568987 No 45 >>1tt9_A Formimidoyltransferase-cyclodeaminase (formiminotransferase- cyclodeaminase) (FTCD)...; hepatitis autoantigen, intermediate channeling; 3.42A {Rattus norvegicus} PDB: 2pfd_A (A:1-180) Probab=21.88 E-value=53 Score=13.86 Aligned_cols=70 Identities=9% Similarity=0.028 Sum_probs=38.3 Q ss_pred CCEEEEEEEECCCCCE---EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE-CCCCCCCCCHH Q ss_conf 9779999995499868---99999658778789999999999875202113567650799972-78877445789 Q gi|254780789|r 37 SFRSVQISLLEEKNLL---LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSS-PGIDRPMVRKS 107 (192) Q Consensus 37 G~eLv~v~~~~~~~~~---LrI~ID~~dg~i~iddC~~vSr~i~~~LD~~d~i~~~Y~LEVSS-PGidRpL~~~~ 107 (192) -++++|++.+.+.++. +-+.--.|=+++|+++|..+++.+...+-.+--++- |.-|-+. ..--|+|-..| T Consensus 69 A~~~IDm~~H~G~HPR~GavDvipf~Pl~~~t~eec~~lA~~~g~~ig~~l~vPV-yLYg~Aa~~p~r~~L~~iR 142 (180) T 1tt9_A 69 ASQLIDXRKHKGEHPRXGALDVCPFIPVRGVSXDECVLCAKAFGQRLAEELNVPV-YLYGEAAQXPSRQTLPAIR 142 (180) T ss_pred HHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCE-EEEHHHCCCCCCCCHHHHH T ss_conf 9985574447787998974252200127999999999999999999985269866-8623303895325578897 Done!