Query         gi|254780789|ref|YP_003065202.1| hypothetical protein CLIBASIA_03400 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 192
No_of_seqs    121 out of 1003
Neff          5.7 
Searched_HMMs 33803
Date          Wed Jun  1 14:04:56 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780789.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1ib8_A Conserved protein SP14  99.9 3.4E-23   1E-27  164.9  10.5   86   14-101     3-91  (91)
  2 >1ib8_A Conserved protein SP14  99.5 8.7E-14 2.6E-18  106.1   6.4   70  102-175     1-70  (73)
  3 >1m5q_A SMAP3, small nuclear r  87.2     1.5 4.5E-05   23.5   5.4   57  107-168     3-60  (67)
  4 >1ycy_A Conserved hypothetical  83.6     2.2 6.4E-05   22.5   4.8   59  105-168     7-65  (71)
  5 >3fb9_A Uncharacterized protei  81.9     3.8 0.00011   21.0   8.5   68  106-173    17-85  (90)
  6 >2rm4_A CG6311-PB, DM EDC3; en  81.8     3.4  0.0001   21.3   5.2   62  110-174     8-71  (103)
  7 >2vc8_A Enhancer of mRNA-decap  81.3     3.9 0.00011   21.0   5.3   60  111-173     6-67  (84)
  8 >2ckk_A KIN17; beta barrel, ri  77.0     2.9 8.5E-05   21.8   3.6   51  114-169     2-53  (55)
  9 >1y96_A Gemin6, SIP2, GEM-asso  76.9     5.1 0.00015   20.2   4.9   38  104-145     7-44  (74)
 10 >3cw1_A Small nuclear ribonucl  74.5     6.3 0.00019   19.6   5.2   40  104-147     4-44  (174)
 11 >1ljo_A Archaeal SM-like prote  72.7     4.6 0.00014   20.5   3.8   39  106-147     7-46  (77)
 12 >1nz9_A Transcription antiterm  72.2     6.2 0.00018   19.7   4.3   51  112-170     6-58  (58)
 13 >2e70_A Transcription elongati  71.1     4.9 0.00015   20.3   3.6   50  109-168    16-65  (71)
 14 >3cw1_F Small nuclear ribonucl  70.8     7.7 0.00023   19.1   6.4   43  101-147     3-46  (86)
 15 >3cw1_G Small nuclear ribonucl  68.1     8.2 0.00024   18.9   4.2   38  106-147     6-44  (76)
 16 >3bw1_A SMX4 protein, U6 snRNA  67.5     6.1 0.00018   19.7   3.5   36  108-147    14-50  (96)
 17 >1i8f_A Putative snRNP SM-like  67.2     7.6 0.00022   19.1   3.9   37  107-147    14-51  (81)
 18 >1d3b_B Protein (small nuclear  67.0       7 0.00021   19.3   3.7   35  109-147     9-44  (91)
 19 >3cw1_E Small nuclear ribonucl  65.4     9.9 0.00029   18.4   5.8   44  100-147    15-60  (92)
 20 >1i4k_A Putative snRNP SM-like  64.6       8 0.00024   19.0   3.6   37  107-147     7-44  (77)
 21 >1n9r_A SMF, small nuclear rib  64.4     8.7 0.00026   18.7   3.8   37  108-147    25-62  (93)
 22 >1th7_A SnRNP-2, small nuclear  63.2      11 0.00032   18.1   6.8   38  107-148    12-50  (81)
 23 >1h64_1 SnRNP SM-like protein;  61.3      12 0.00035   17.9   4.5   36  108-147     8-44  (75)
 24 >2hbp_A Cytoskeleton assembly   60.0     3.2 9.5E-05   21.4   0.9   55  125-186    11-65  (68)
 25 >1mgq_A SM-like protein; LSM,   59.8      12 0.00037   17.8   6.2   38  106-147    17-55  (83)
 26 >1d3b_A Protein (small nuclear  59.7      13 0.00037   17.7   6.1   38  107-148     8-46  (75)
 27 >2fwk_A U6 snRNA-associated SM  56.1     8.3 0.00025   18.9   2.5   38  106-147    29-68  (121)
 28 >3cw1_D Small nuclear ribonucl  48.2      19 0.00057   16.6   4.1   38  102-146     6-44  (126)
 29 >2e6z_A Transcription elongati  46.6      20  0.0006   16.4   3.6   49  113-169    10-58  (59)
 30 >1b34_B Protein (small nuclear  44.8      22 0.00064   16.3   4.4   35  109-147    34-69  (118)
 31 >1b34_A Protein (small nuclear  44.0      22 0.00066   16.2   5.6   62  107-172     5-70  (119)
 32 >1gtd_A MTH169; synthetase, FG  40.8      25 0.00074   15.9   3.3   70   18-96     12-81  (85)
 33 >2fyx_A Transposase, putative;  39.8      26 0.00077   15.8   8.3  102    6-115     6-119 (121)
 34 >1qd1_A Formiminotransferase-c  34.5      28 0.00083   15.6   2.4   50   62-112    96-148 (179)
 35 >1ug7_A 2610208M17RIK protein;  34.0      26 0.00076   15.8   2.1   30   59-89     89-118 (128)
 36 >1dpg_A G6PD, glucose 6-phosph  33.6      33 0.00096   15.2   4.5   34   52-86    141-174 (182)
 37 >3jz0_A Lincosamide nucleotidy  32.0      23 0.00067   16.1   1.6   46    1-47      1-48  (159)
 38 >2bh9_A G6PD, glucose-6-phosph  29.4      38  0.0011   14.7   4.5   36   50-86    136-171 (178)
 39 >1bia_A BIRA bifunctional prot  27.4      41  0.0012   14.5   4.9   45  113-162     1-45  (50)
 40 >2vs7_A I-DMOI, homing endonuc  27.2      21 0.00062   16.4   0.7   36   66-101    12-52  (79)
 41 >1ixd_A Cylindromatosis tumour  26.1      38  0.0011   14.8   1.8   41  111-151    18-58  (104)
 42 >2yx5_A UPF0062 protein MJ1593  23.6      46  0.0014   14.2   1.9   69   18-95     11-80  (83)
 43 >1ti6_B Pyrogallol hydroxytran  22.8      40  0.0012   14.6   1.5   19   83-101    45-63  (81)
 44 >1uty_A Non-structural protein  21.9      21 0.00063   16.3  -0.1   36   68-103    22-69  (187)
 45 >1tt9_A Formimidoyltransferase  21.9      53  0.0016   13.9   4.7   70   37-107    69-142 (180)

No 1  
>>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} (A:1-91)
Probab=99.90  E-value=3.4e-23  Score=164.88  Aligned_cols=86  Identities=34%  Similarity=0.613  Sum_probs=76.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECC-CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCC--CCCCCCC
Q ss_conf             10014127999999999999747977999999549-98689999965877878999999999987520211--3567650
Q gi|254780789|r   14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE--NIIEGHY   90 (192)
Q Consensus        14 r~~~~~~i~~~i~~li~p~v~~lG~eLv~v~~~~~-~~~~LrI~ID~~dg~i~iddC~~vSr~i~~~LD~~--d~i~~~Y   90 (192)
                      |.+....+.++|+++++|+++ +||+||+|++.+. ++++|||+||+++| |++|||+++||+|++.||++  +|++++|
T Consensus         3 ~~~~~~~~~~~i~~l~~~v~~-~g~eL~~v~~~~~~~~~~l~V~iD~~~g-i~iddc~~~Sr~i~~~LD~e~~d~i~~~Y   80 (91)
T 1ib8_A            3 GVDAIATIVELVREVVEPVIE-APFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEMISPVLDTIKPDPFPEQY   80 (91)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHC-SSSEEEEEEEEEETTEEEEEEEEECSSC-CCHHHHHHHHHHHGGGTTTCCSCCCCSCE
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-CCCEEEEEEEECCCCCCEEEEEEECCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCE
T ss_conf             265899999999999999985-7988999999828997199999999999-67899999999998776044465667534


Q ss_pred             EEEEEECCCCC
Q ss_conf             79997278877
Q gi|254780789|r   91 RLEVSSPGIDR  101 (192)
Q Consensus        91 ~LEVSSPGidR  101 (192)
                      +|||||||++|
T Consensus        81 ~LEVSSPGl~R   91 (91)
T 1ib8_A           81 FLEITSPGLER   91 (91)
T ss_dssp             EEEEECCSSSS
T ss_pred             EEEEECCCCCC
T ss_conf             99995799987


No 2  
>>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} (A:92-164)
Probab=99.47  E-value=8.7e-14  Score=106.13  Aligned_cols=70  Identities=16%  Similarity=0.258  Sum_probs=64.7

Q ss_pred             CCCCHHHHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCEEEEEHHHHHHCCEECC
Q ss_conf             44578999987105688987226688078999985126975999963554567777269976887651725046
Q gi|254780789|r  102 PMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT  175 (192)
Q Consensus       102 pL~~~~~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~~i~l~~~~~~~k~~~~~~v~ip~~~I~kAkLv~~  175 (192)
                      ||++++||.+|+|+.|+|+|+.|++|+|+|+|+|.+++++.++|.++++.    ...+++|||++|++|||++.
T Consensus         1 PL~~~~df~r~~G~~V~i~l~~pi~g~k~f~G~L~~~~~~~i~l~~~~~~----~~~~i~i~~~~I~karL~~~   70 (73)
T 1ib8_A            1 PLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEEDELTMEYMDKT----RKKTVQIPYSLVSKARLAVK   70 (73)
T ss_dssp             CCSSHHHHHHHCSEEEEEECSSCSSSCSEEEEEEEEEETTEEEEEEECSS----CEEEEEECSSCCSSCEEECS
T ss_pred             CCCCHHHHHHHCCCEEEEEEECCCCCEEEEEEEEEEEECCEEEEEEECCC----CCEEEEEEHHHCCEEEEEEE
T ss_conf             23898899986695699999636698589999999884998999981477----77499974799367799999


No 3  
>>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} (A:1-67)
Probab=87.25  E-value=1.5  Score=23.47  Aligned_cols=57  Identities=9%  Similarity=0.120  Sum_probs=37.7

Q ss_pred             HHHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEECCCCCCCCCCCEEEEEHHHHH
Q ss_conf             99998710568898722668807899998512697-599996355456777726997688765
Q gi|254780789|r  107 SDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEKEKRGEKDMNELQIAISFDSLL  168 (192)
Q Consensus       107 ~~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~~~~~~k~~~~~~v~ip~~~I~  168 (192)
                      ...+.++|+.|.|++++    .+.|.|+|.++|.. .+.|....+-.+ ..-..+-|+-++|.
T Consensus         3 ~~L~~~l~k~V~V~l~d----gr~~~G~L~~~D~~~NlvL~da~E~~~-~~~G~v~irG~~I~   60 (67)
T 1m5q_A            3 AELNNLLGREVQVVLSN----GEVYKGVLHAVDNQLNIVLANASNKAG-EKFNRVFIXYRYIV   60 (67)
T ss_dssp             HHHHHTTTSEEEEEETT----SCEEEEEEEEECTTCCEEEEEEECTTC-CEEEEEEECGGGEE
T ss_pred             HHHHHHCCCEEEEEECC----CCEEEEEEEEECCCCEEEEEEEEECCC-CCCCEEEEECCCEE
T ss_conf             78876279869999999----989999999987996569915798789-84566999379389


No 4  
>>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} (A:)
Probab=83.56  E-value=2.2  Score=22.52  Aligned_cols=59  Identities=19%  Similarity=0.275  Sum_probs=39.2

Q ss_pred             CHHHHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCEEEEEHHHHH
Q ss_conf             7899998710568898722668807899998512697599996355456777726997688765
Q gi|254780789|r  105 RKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLL  168 (192)
Q Consensus       105 ~~~~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~~i~l~~~~~~~k~~~~~~v~ip~~~I~  168 (192)
                      ..+-.++|.|++|.|.    +++...|+|+|..++++.+.+..--... ....+.+-+..++|.
T Consensus         7 LdktL~~WKg~kVAv~----vg~ehSFtGiledFDeEviLLkdV~D~~-GNk~k~liv~idDin   65 (71)
T 1ycy_A            7 LEKVLKEWKGHKVAVS----VGGDHSFTGTLEDFDEEVILLKDVVDVI-GNRGKQXLIGLEDIN   65 (71)
T ss_dssp             HHHHHHHHTTSEEEEE----EC----CEEEEEEECSSEEEEEEEEETT-EEEEEEEEEEGGGEE
T ss_pred             HHHHHHHHCCCEEEEE----ECCCCEEEEEHHHCCCCEEEHHHHHHHH-CCCCCEEEEEECCCE
T ss_conf             9999998479679999----6685215666545586367511568885-655231589853623


No 5  
>>3fb9_A Uncharacterized protein; unknown function, structural genomics, MCSG, PSI2, protein structure initiative; 1.80A {Streptococcus pneumoniae TIGR4} (A:)
Probab=81.87  E-value=3.8  Score=20.98  Aligned_cols=68  Identities=16%  Similarity=0.304  Sum_probs=49.0

Q ss_pred             HHHHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCCEEEEEECCCC-CCCCCCCEEEEEHHHHHHCCEE
Q ss_conf             8999987105688987226688078999985126975999963554-5677772699768876517250
Q gi|254780789|r  106 KSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRG-EKDMNELQIAISFDSLLSARLI  173 (192)
Q Consensus       106 ~~~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~~i~l~~~~~~-~k~~~~~~v~ip~~~I~kAkLv  173 (192)
                      .+....++|+.|+++....=.....-.|+|.++=..-+++.++... .+...-..++..|.+|---...
T Consensus        17 k~~l~~~vG~~V~l~an~GRkK~~~~~GvL~etYPsvFvV~ld~~~~~~~~~~~rvSYSYsDiLT~~V~   85 (90)
T 3fb9_A           17 KEEIKAHEGQVVEMTLENGRKRQKNRLGKLIEVYPSLFIVEFGDVEGDKQVNVYVESFTYSDILTEKNL   85 (90)
T ss_dssp             HHHHHHTTTSEEEEEECCSSSCCSCEEEEEEEECSSEEEEEESCSTTSCCSSCEEEEEEHHHHHTTSEE
T ss_pred             HHHHHHHCCCEEEEEECCCCCCEEEEEEEEEEECCCEEEEEECCCCCCCCCCEEEEEEEEEEEECCCEE
T ss_conf             999997279889999638951279999999541562899997265677567548998886202316189


No 6  
>>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster} (A:)
Probab=81.78  E-value=3.4  Score=21.30  Aligned_cols=62  Identities=16%  Similarity=0.144  Sum_probs=47.8

Q ss_pred             HHHHCCEEEEEEECCCCCEEEEEEEEEECCCCEEEEEECCCCCC--CCCCCEEEEEHHHHHHCCEEC
Q ss_conf             98710568898722668807899998512697599996355456--777726997688765172504
Q gi|254780789|r  110 LRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEK--DMNELQIAISFDSLLSARLIV  174 (192)
Q Consensus       110 ~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~~i~l~~~~~~~k--~~~~~~v~ip~~~I~kAkLv~  174 (192)
                      ..|+|..|.+...+   ..-.|.|.+..++...|+|...=....  +....++++.-.+|..-+|+-
T Consensus         8 ~~~iG~~VSI~C~~---~lGvyQG~I~~vs~q~ItL~~af~NGvPlk~~~~EVtl~a~DI~~LkiI~   71 (103)
T 2rm4_A            8 QDWIGCAVSIACDE---VLGVFQGLIKQISAEEITIVRAFRNGVPLRKQNAEVVLKCTDIRSIDLIE   71 (103)
T ss_dssp             GGGTTCEEEEEECT---TTCEEEEEEEEEETTEEEEEEEEETTEECSCSSSCEEEETTTEEEEEEEE
T ss_pred             CCCEEEEEEEEECC---CCCEEEEEEEEECCCEEEEEEHHHCCCCCCCCCCEEEEEHHHCCCEEEEE
T ss_conf             26120699998779---87478789998445548984232478765568834998813221102752


No 7  
>>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens} (A:)
Probab=81.28  E-value=3.9  Score=20.95  Aligned_cols=60  Identities=8%  Similarity=0.157  Sum_probs=48.6

Q ss_pred             HHHCCEEEEEEECCCCCEEEEEEEEEECCCC--EEEEEECCCCCCCCCCCEEEEEHHHHHHCCEE
Q ss_conf             8710568898722668807899998512697--59999635545677772699768876517250
Q gi|254780789|r  111 RWNGHVVACEIVLSSGDKQKLIGKIMGTSET--GFFLEKEKRGEKDMNELQIAISFDSLLSARLI  173 (192)
Q Consensus       111 r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~--~i~l~~~~~~~k~~~~~~v~ip~~~I~kAkLv  173 (192)
                      .|+|..|.+....   +.-.|.|.+..++.+  .|+|...=....+....++++.-.+|..-+|+
T Consensus         6 ~~iG~~VSi~C~~---~lGvyQG~I~~v~~~~q~ItL~~af~NGvp~~~~EVtl~a~dI~~Lkii   67 (84)
T 2vc8_A            6 DWLGSIVSINCGD---SLGVYQGRVSAVDQVSQTISLTRPFHNGVKCLVPEVTFRAGDITELKIL   67 (84)
T ss_dssp             TTTTCEEEEECCT---TTCEEEEEEEEEETTTTEEEEEEEEETTEECSSSEEEEEGGGCSEEEEE
T ss_pred             CCCCEEEEEEECC---CCCEEEEEEEEECCCCCEEEEEHHHHCCCCCCCCEEEEEHHHCCCCEEE
T ss_conf             1145389998579---8647888998826877679981264488778885599981311011389


No 8  
>>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens} (A:73-127)
Probab=76.98  E-value=2.9  Score=21.76  Aligned_cols=51  Identities=10%  Similarity=0.152  Sum_probs=33.4

Q ss_pred             CCEEEEEEECCCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCEEE-EEHHHHHH
Q ss_conf             056889872266880789999851269759999635545677772699-76887651
Q gi|254780789|r  114 GHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIA-ISFDSLLS  169 (192)
Q Consensus       114 G~~VkV~l~~~~~g~k~~~G~L~~v~~~~i~l~~~~~~~k~~~~~~v~-ip~~~I~k  169 (192)
                      |+.|.| ++....|.   .|+|.+++++.+...+.-... +.....+. +||++|.|
T Consensus         2 G~~V~V-vNG~yRG~---~a~L~~i~e~~f~a~i~i~~G-p~kGr~v~~v~YEDicK   53 (55)
T 2ckk_A            2 GKRILV-LNGGYRGN---EGTLESINEKTFSATIVIETG-PLKGRRVEGIQYEDISK   53 (55)
T ss_dssp             TCEEEE-CSSTTTTC---EEEEEEEEGGGTEEEEEECSS-TTTTCEEEEEEGGGEEE
T ss_pred             CCEEEE-EECCCCCC---EEEEEEEECCCCEEEEEECCC-CCCCCEEEECCHHHHHH
T ss_conf             995999-85675786---999999936588899997268-87664898428899740


No 9  
>>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens} (A:1-74)
Probab=76.92  E-value=5.1  Score=20.19  Aligned_cols=38  Identities=11%  Similarity=0.040  Sum_probs=30.4

Q ss_pred             CCHHHHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCCEEEE
Q ss_conf             578999987105688987226688078999985126975999
Q gi|254780789|r  104 VRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFL  145 (192)
Q Consensus       104 ~~~~~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~~i~l  145 (192)
                      +.|.+|+.|++++|+|.+.+    .+.+.|.+..+|.-...+
T Consensus         7 ~~P~~~~~yv~k~V~Vtl~d----~~~~~GwVyTvDPVS~SV   44 (74)
T 1y96_A            7 KGPLEWQDYIYKEVRVTASE----KNEYKGWVLTTDPVSANI   44 (74)
T ss_dssp             SCHHHHHHTTTCEEEEEETT----TEEEEEEEEEECTTTCCE
T ss_pred             CCHHHHHHHHCCEEEEEECC----CCEEEEEEEEECCCCCEE
T ss_conf             79799998639689999735----977987999968874169


No 10 
>>3cw1_A Small nuclear ribonucleoprotein-associated proteins B and B; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, zinc finger, RNA recognition motif; 5.49A {Homo sapiens} (A:)
Probab=74.53  E-value=6.3  Score=19.62  Aligned_cols=40  Identities=15%  Similarity=0.245  Sum_probs=29.1

Q ss_pred             CCHHHHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEE
Q ss_conf             57899998710568898722668807899998512697-599996
Q gi|254780789|r  104 VRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEK  147 (192)
Q Consensus       104 ~~~~~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~  147 (192)
                      .+.....+|+++.|.|+|+   +| +.|.|+|.++|.. +++|..
T Consensus         4 ~k~skL~~~in~rV~V~l~---DG-R~~~G~L~~fD~~mNlVL~d   44 (174)
T 3cw1_A            4 GKSSKMLQHIDYRMRCILQ---DG-RIFIGTFKAFDKHMNLILCD   44 (174)
T ss_pred             CCHHHHHHHCCCEEEEEEC---CC-CEEEEEEEEECCCCCEEECC
T ss_conf             6357999864987999982---99-59999999986767878627


No 11 
>>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown function; 1.95A {Archaeoglobus fulgidus} (A:)
Probab=72.66  E-value=4.6  Score=20.46  Aligned_cols=39  Identities=21%  Similarity=0.516  Sum_probs=29.4

Q ss_pred             HHHHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEE
Q ss_conf             899998710568898722668807899998512697-599996
Q gi|254780789|r  106 KSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEK  147 (192)
Q Consensus       106 ~~~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~  147 (192)
                      ..-.+.++|+.|.|+++   +|+-.+.|+|.++|+. .+.|..
T Consensus         7 ~~~L~~~~~~~V~V~lk---~g~~~~~G~L~~~D~~mNivL~d   46 (77)
T 1ljo_A            7 NQMVKSMVGKIIRVEMK---GEENQLVGKLEGVDDYMNLYLTN   46 (77)
T ss_dssp             HHHHHHTTTSEEEEEET---TCSSEEEEEEEEECTTCCEEEEE
T ss_pred             HHHHHHHCCCEEEEEEE---CCCEEEEEEEEEECCCCCEEEEE
T ss_conf             99998748998999997---99899999999997987269968


No 12 
>>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} (A:)
Probab=72.19  E-value=6.2  Score=19.67  Aligned_cols=51  Identities=16%  Similarity=0.233  Sum_probs=37.0

Q ss_pred             HHCCEEEEEEECCCCCEEEEEEEEEECCCC--EEEEEECCCCCCCCCCCEEEEEHHHHHHC
Q ss_conf             710568898722668807899998512697--59999635545677772699768876517
Q gi|254780789|r  112 WNGHVVACEIVLSSGDKQKLIGKIMGTSET--GFFLEKEKRGEKDMNELQIAISFDSLLSA  170 (192)
Q Consensus       112 ~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~--~i~l~~~~~~~k~~~~~~v~ip~~~I~kA  170 (192)
                      ..|..|+| ...|..|   |.|++.+++.+  .+.+.++--++    ...++++|++|.||
T Consensus         6 ~~Gd~V~I-~~GpF~g---~~G~V~~id~~k~~v~V~i~~fGr----~t~vel~~~~ieKa   58 (58)
T 1nz9_A            6 REGDQVRV-VSGPFAD---FTGTVTEINPERGKVKVMVTIFGR----ETPVELDFSQVVKA   58 (58)
T ss_dssp             CTTCEEEE-CSGGGTT---CEEEEEEEETTTTEEEEEEESSSS----EEEEEECGGGEEEC
T ss_pred             CCCCEEEE-CCCCCCC---CEEEEEEEECCCCEEEEEEEECCC----CCEEEECHHHEECC
T ss_conf             59999999-2468999---889999990889999999982499----83373598997709


No 13 
>>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=71.11  E-value=4.9  Score=20.29  Aligned_cols=50  Identities=16%  Similarity=0.075  Sum_probs=38.2

Q ss_pred             HHHHHCCEEEEEEECCCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCEEEEEHHHHH
Q ss_conf             998710568898722668807899998512697599996355456777726997688765
Q gi|254780789|r  109 FLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLL  168 (192)
Q Consensus       109 f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~~i~l~~~~~~~k~~~~~~v~ip~~~I~  168 (192)
                      -.+++|+.|+|+ ..+..|   +.|++..++++.+.+++....      ..++++-+.|.
T Consensus        16 ~d~liGktV~I~-~G~yKG---~~G~Vkd~t~~~~rVeLhs~~------K~v~V~r~~l~   65 (71)
T 2e70_A           16 DNELIGQTVRIS-QGPYKG---YIGVVKDATESTARVELHSTC------QTISVDRQRLT   65 (71)
T ss_dssp             TTSSTTSEEEEC-SSTTTT---CEEEEEEECSSCEEEEESSSC------CEEEECTTTEE
T ss_pred             CCCCCCCEEEEE-ECCCCC---EEEEEEECCCCEEEEEECCCC------EEEEEEHHHEE
T ss_conf             644458889996-527688---788999652886999983688------49998978836


No 14 
>>3cw1_F Small nuclear ribonucleoprotein F; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, zinc finger, RNA recognition motif; 5.49A {Homo sapiens} (F:)
Probab=70.83  E-value=7.7  Score=19.08  Aligned_cols=43  Identities=14%  Similarity=0.157  Sum_probs=31.8

Q ss_pred             CCCCCHHHHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEE
Q ss_conf             74457899998710568898722668807899998512697-599996
Q gi|254780789|r  101 RPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEK  147 (192)
Q Consensus       101 RpL~~~~~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~  147 (192)
                      .|..-..-.+.++|+.|.|.+++    .+.+.|+|.++|.. .+.|..
T Consensus         3 ~~~~p~~~L~~~~g~~V~V~l~~----g~~~~G~L~~~D~~mNivL~~   46 (86)
T 3cw1_F            3 LPLNPKPFLNGLTGKPVMVKLKW----GMEYKGYLVSVDGYMNMQLAN   46 (86)
T ss_pred             CCCCHHHHHHHHCCCEEEEEEEC----CEEEEEEEEEECCCCEEEEEE
T ss_conf             45588999987579789999959----919998789894887169912


No 15 
>>3cw1_G Small nuclear ribonucleoprotein G; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, zinc finger, RNA recognition motif; 5.49A {Homo sapiens} (G:)
Probab=68.14  E-value=8.2  Score=18.90  Aligned_cols=38  Identities=5%  Similarity=0.197  Sum_probs=28.9

Q ss_pred             HHHHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEE
Q ss_conf             899998710568898722668807899998512697-599996
Q gi|254780789|r  106 KSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEK  147 (192)
Q Consensus       106 ~~~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~  147 (192)
                      ..-.+.++|+.|.|++++    .+.+.|+|.++|.. .+.|..
T Consensus         6 ~~~L~~~~g~~v~V~lk~----g~~~~G~L~~~D~~mNlvL~~   44 (76)
T 3cw1_G            6 PPELKKFMDKKLSLKLNG----GRHVQGILRGFDPFMNLVIDE   44 (76)
T ss_pred             CHHHHHHCCCCEEEEECC----CCEEEEEEEEECCCCCEEEEE
T ss_conf             767998679819999889----939999999985856479986


No 16 
>>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, homomeric, octamer, cytoplasm; 2.50A {Saccharomyces cerevisiae} (A:)
Probab=67.53  E-value=6.1  Score=19.72  Aligned_cols=36  Identities=11%  Similarity=0.049  Sum_probs=28.3

Q ss_pred             HHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEE
Q ss_conf             9998710568898722668807899998512697-599996
Q gi|254780789|r  108 DFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEK  147 (192)
Q Consensus       108 ~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~  147 (192)
                      -+..++|+.|.|.|++    .+.+.|+|.++|.. ++.|..
T Consensus        14 ~L~~~l~~~V~V~l~d----g~~~~G~L~~~D~~mNlvL~d   50 (96)
T 3bw1_A           14 LLKLNLDERVYIKLRG----ARTLVGTLQAFDSHCNIVLSD   50 (96)
T ss_dssp             HHGGGTTSEEEEEEGG----GCEEEEEEEEECTTCCEEEEE
T ss_pred             HHHHHCCCEEEEEECC----CCEEEEEEEEECCCCCEEECC
T ss_conf             9998789869999929----919999999988999729884


No 17 
>>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet in the heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} (A:)
Probab=67.19  E-value=7.6  Score=19.12  Aligned_cols=37  Identities=14%  Similarity=0.201  Sum_probs=28.5

Q ss_pred             HHHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEE
Q ss_conf             99998710568898722668807899998512697-599996
Q gi|254780789|r  107 SDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEK  147 (192)
Q Consensus       107 ~~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~  147 (192)
                      .-+..++|+.|.|+|++    .+.+.|+|.++|.. .+.|..
T Consensus        14 ~~L~~~~~~~V~V~l~~----g~~~~G~L~~~D~~mNlvL~~   51 (81)
T 1i8f_A           14 ATLQDSIGKQVLVKLRD----SHEIRGILRSFDQHVNLLLED   51 (81)
T ss_dssp             HHHHTTTTSEEEEEEGG----GEEEEEEEEEECTTCCEEEEE
T ss_pred             HHHHHHCCCEEEEEECC----CCEEEEEEEEECCCCCEEECC
T ss_conf             99998669979999959----919999999976997749958


No 18 
>>1d3b_B Protein (small nuclear ribonucleoprotein associated protein B); snRNP, splicing, core snRNP domain, systemic lupus erythematosus, SLE; HET: CIT; 2.00A {Homo sapiens} (B:)
Probab=66.98  E-value=7  Score=19.33  Aligned_cols=35  Identities=14%  Similarity=0.208  Sum_probs=27.1

Q ss_pred             HHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEE
Q ss_conf             998710568898722668807899998512697-599996
Q gi|254780789|r  109 FLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEK  147 (192)
Q Consensus       109 f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~  147 (192)
                      .+.++|+.|.|+++.    .+.|.|+|.++|.. .++|..
T Consensus         9 L~~~l~~~V~V~l~~----gr~~~G~L~~~D~~~NlvL~d   44 (91)
T 1d3b_B            9 MLQHIDYRMRCILQD----GRIFIGTFKAFDKHMNLILCD   44 (91)
T ss_dssp             CGGGTTSEEEEEETT----CCEEEEEEEECCTTCCEEEEE
T ss_pred             HHHHCCCEEEEEECC----CCEEEEEEEEECCCCCEEEEC
T ss_conf             998739879999859----969999999986757879716


No 19 
>>3cw1_E Small nuclear ribonucleoprotein E; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, zinc finger, RNA recognition motif; 5.49A {Homo sapiens} (E:)
Probab=65.45  E-value=9.9  Score=18.40  Aligned_cols=44  Identities=16%  Similarity=0.153  Sum_probs=31.7

Q ss_pred             CCCCCCHHHH-HHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEE
Q ss_conf             7744578999-98710568898722668807899998512697-599996
Q gi|254780789|r  100 DRPMVRKSDF-LRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEK  147 (192)
Q Consensus       100 dRpL~~~~~f-~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~  147 (192)
                      ..|+..+-.| ..++|+.|.|++++    .+.+.|+|.++|+. .+.|..
T Consensus        15 ~~~~~~~~~~L~~~~~~~V~V~l~~----g~~~~G~L~~~D~~mNlvL~d   60 (92)
T 3cw1_E           15 VQPINLIFRYLQNRSRIQVWLYEQV----NMRIEGCIIGFDEYMNLVLDD   60 (92)
T ss_pred             CCCHHHHHHHHHHCCCEEEEEEECC----CEEEEEEEEEECCCCEEEEEC
T ss_conf             5988999999962787899999479----829999999986750799824


No 20 
>>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} (A:)
Probab=64.62  E-value=8  Score=18.98  Aligned_cols=37  Identities=14%  Similarity=0.054  Sum_probs=28.5

Q ss_pred             HHHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEE
Q ss_conf             99998710568898722668807899998512697-599996
Q gi|254780789|r  107 SDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEK  147 (192)
Q Consensus       107 ~~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~  147 (192)
                      .-...++|+.|.|++++    .+.+.|+|.++|.. .+.|..
T Consensus         7 ~~L~~~~~~~V~V~l~~----g~~~~G~L~~~D~~mNivL~~   44 (77)
T 1i4k_A            7 DVLNRSLKSPVIVRLKG----GREFRGTLDGYDIHMNLVLLD   44 (77)
T ss_dssp             HHHHTTTTSEEEEEETT----SCEEEEEEEEECTTCCEEEEE
T ss_pred             HHHHHHCCCEEEEEECC----CCEEEEEEEEECCCCCEEEEE
T ss_conf             99987589989999869----989999999997988379978


No 21 
>>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein; heptamer, translation; 2.80A {Saccharomyces cerevisiae} (A:)
Probab=64.42  E-value=8.7  Score=18.74  Aligned_cols=37  Identities=14%  Similarity=0.223  Sum_probs=28.2

Q ss_pred             HHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEE
Q ss_conf             9998710568898722668807899998512697-599996
Q gi|254780789|r  108 DFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEK  147 (192)
Q Consensus       108 ~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~  147 (192)
                      .++.++|+.|.|+|+.   +.+.+.|+|.++|.. .+.|..
T Consensus        25 ~L~~~~~~~V~V~Lk~---ng~~~~G~L~~~D~~mNlvL~d   62 (93)
T 1n9r_A           25 FLKGLVNHRVGVKLKF---NSTEYRGTLVSTDNYFNLQLNE   62 (93)
T ss_dssp             -CGGGTTSEEEEEESS---TTEEEEEEEEECCTTTCEEEEE
T ss_pred             HHHHCCCCEEEEEEEC---CCEEEEEEEEEECCCCEEEEEE
T ss_conf             9986089879999974---9999999999985887059924


No 22 
>>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} (A:)
Probab=63.21  E-value=11  Score=18.14  Aligned_cols=38  Identities=8%  Similarity=0.113  Sum_probs=30.0

Q ss_pred             HHHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEEC
Q ss_conf             99998710568898722668807899998512697-5999963
Q gi|254780789|r  107 SDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEKE  148 (192)
Q Consensus       107 ~~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~~  148 (192)
                      ..++.++|+.|.|++++    .+.+.|+|.++|.. .++|...
T Consensus        12 ~~L~~~~~~~V~V~l~~----g~~~~G~L~~~D~~mNivL~d~   50 (81)
T 1th7_A           12 KVLAESLNNLVLVKLKG----NKEVRGMLRSYDQHMNLVLSDS   50 (81)
T ss_dssp             HHHHHHTTSEEEEEETT----TEEEEEEEEEECTTCCEEEEEE
T ss_pred             HHHHHHCCCEEEEEECC----CCEEEEEEEEECCCCCEEEEEE
T ss_conf             99998779859999879----9699999999868772798029


No 23 
>>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} (1:)
Probab=61.27  E-value=12  Score=17.92  Aligned_cols=36  Identities=14%  Similarity=0.094  Sum_probs=28.0

Q ss_pred             HHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEE
Q ss_conf             9998710568898722668807899998512697-599996
Q gi|254780789|r  108 DFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEK  147 (192)
Q Consensus       108 ~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~  147 (192)
                      -.++++|+.|.|+++.    .+.+.|+|.++|.. .+.|..
T Consensus         8 ~L~~~~~~~V~V~l~~----g~~~~G~L~~~D~~mNlvL~~   44 (75)
T 1h64_1            8 VIHRSLDKDVLVILKK----GFEFRGRLIGYDIHLNVVLAD   44 (75)
T ss_dssp             HHHTTTTSEEEEEETT----SEEEEEEEEEECTTCCEEEEE
T ss_pred             HHHHHCCCEEEEEECC----CCEEEEEEEEECCCCCEEEEE
T ss_conf             9987489879999959----979999999997888479988


No 24 
>>2hbp_A Cytoskeleton assembly control protein SLA1; SHD1, NPFX(1,2)D, endocytosis, protein binding; NMR {Saccharomyces cerevisiae} (A:)
Probab=60.05  E-value=3.2  Score=21.43  Aligned_cols=55  Identities=20%  Similarity=0.335  Sum_probs=35.5

Q ss_pred             CCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCEEEEEHHHHHHCCEECCHHHHHHHHHCC
Q ss_conf             68807899998512697599996355456777726997688765172504699999999607
Q gi|254780789|r  125 SGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNY  186 (192)
Q Consensus       125 ~~g~k~~~G~L~~v~~~~i~l~~~~~~~k~~~~~~v~ip~~~I~kAkLv~~d~l~~~~~~~~  186 (192)
                      ..|+-++.+.++++.++.|.|....       ...+.+|++..+.+-+.+-+++-+.+++.+
T Consensus        11 ~~G~f~veA~fv~~~~~~V~L~k~n-------G~~i~VPl~kLS~~Dq~~ve~~t~~~~e~~   65 (68)
T 2hbp_A           11 RSGTFKVDAEFIGCAKGKIHLHKAN-------GVKIAVAADKLSNEDLAYVEKITGFSLEKF   65 (68)
T ss_dssp             SSSCCEEEEEEEEEETTEEEEECTT-------SCEEEEETTSBCHHHHHHHHHHHSCCCGGG
T ss_pred             CCCCEEEEEEEEEEECCEEEEEECC-------CEEEEEEHHHCCHHHHHHHHHHHCCCCHHH
T ss_conf             8999899999998629999999749-------979997959979989999999863661222


No 25 
>>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} (A:)
Probab=59.80  E-value=12  Score=17.76  Aligned_cols=38  Identities=8%  Similarity=0.003  Sum_probs=29.5

Q ss_pred             HHHHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEE
Q ss_conf             899998710568898722668807899998512697-599996
Q gi|254780789|r  106 KSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEK  147 (192)
Q Consensus       106 ~~~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~  147 (192)
                      .....+++|+.|.|.+++    .+.+.|+|.++|.. .+.|..
T Consensus        17 ~~~L~~~~~~~V~V~l~~----g~~~~G~L~~~D~~mNivL~~   55 (83)
T 1mgq_A           17 LDALGNSLNSPVIIKLKG----DREFRGVLKSFDLHMNLVLND   55 (83)
T ss_dssp             THHHHHTTTSEEEEEETT----TEEEEEEEEEECTTCCEEEEE
T ss_pred             HHHHHHHCCCEEEEEECC----CCEEEEEEEEECCCCCEEEEE
T ss_conf             899998589979999879----999999999988999769911


No 26 
>>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus erythematosus, SLE; HET: CIT; 2.00A {Homo sapiens} (A:)
Probab=59.66  E-value=13  Score=17.75  Aligned_cols=38  Identities=18%  Similarity=0.340  Sum_probs=28.8

Q ss_pred             HHHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEEC
Q ss_conf             99998710568898722668807899998512697-5999963
Q gi|254780789|r  107 SDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEKE  148 (192)
Q Consensus       107 ~~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~~  148 (192)
                      .-++.++|+.|.|++++    .+.+.|+|.++|.. .+.|...
T Consensus         8 ~~L~~~~g~~V~V~l~~----g~~~~G~L~~~D~~mNi~L~~~   46 (75)
T 1d3b_A            8 KVLHEAEGHIVTCETNT----GEVYRGKLIEAEDNMNCQMSNI   46 (75)
T ss_dssp             HHHHHTTTSEEEEEETT----SCEEEEEEEEECTTCCEEEEEE
T ss_pred             HHHHHCCCCEEEEEECC----CEEEEEEEEEECCCCEEEEEEE
T ss_conf             99976589989999899----8399999998969963999899


No 27 
>>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} (A:)
Probab=56.13  E-value=8.3  Score=18.87  Aligned_cols=38  Identities=13%  Similarity=0.172  Sum_probs=28.8

Q ss_pred             HHH-HHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEE
Q ss_conf             899-998710568898722668807899998512697-599996
Q gi|254780789|r  106 KSD-FLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEK  147 (192)
Q Consensus       106 ~~~-f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~  147 (192)
                      |.+ ..+++|+.|.|+|++    .+.|.|+|.++|.. .+.|..
T Consensus        29 p~~~L~~~l~k~V~V~l~~----gr~~~G~L~~~D~~~NlvL~d   68 (121)
T 2fwk_A           29 PLALIDKCIGNRIYVVMKG----DKEFSGVLRGFDEYVNMVLDD   68 (121)
T ss_dssp             HHHHHHHTBTSBCEEEETT----TEEECCEEEEECTTCCEEEES
T ss_pred             HHHHHHHHCCCEEEEEECC----CCEEEEEEEEECCCCCEEEEE
T ss_conf             3999998789879999879----989999999987999839911


No 28 
>>3cw1_D Small nuclear ribonucleoprotein SM D3; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, zinc finger, RNA recognition motif; 5.49A {Homo sapiens} (D:)
Probab=48.24  E-value=19  Score=16.60  Aligned_cols=38  Identities=21%  Similarity=0.437  Sum_probs=28.2

Q ss_pred             CCCCHHHHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEE
Q ss_conf             4457899998710568898722668807899998512697-59999
Q gi|254780789|r  102 PMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLE  146 (192)
Q Consensus       102 pL~~~~~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~  146 (192)
                      ||+.   ....+|+.|.|+|+.    ...+.|+|.++|+. .+.|.
T Consensus         6 Pl~l---L~~~~g~~V~VeLkn----g~~~~G~L~~~D~~MNi~L~   44 (126)
T 3cw1_D            6 PIKV---LHEAEGHIVTCETNT----GEVYRGKLIEAEDNMNCQMS   44 (126)
T ss_pred             HHHH---HHHHCCCEEEEEECC----CEEEEEEEEEECCCCEEEEE
T ss_conf             7999---987179989999899----71999999987488478998


No 29 
>>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=46.63  E-value=20  Score=16.44  Aligned_cols=49  Identities=16%  Similarity=0.175  Sum_probs=34.9

Q ss_pred             HCCEEEEEEECCCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCEEEEEHHHHHH
Q ss_conf             105688987226688078999985126975999963554567777269976887651
Q gi|254780789|r  113 NGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLS  169 (192)
Q Consensus       113 ~G~~VkV~l~~~~~g~k~~~G~L~~v~~~~i~l~~~~~~~k~~~~~~v~ip~~~I~k  169 (192)
                      .|-.|.|--    ..++...|+..+++++.|++......-    +..+.+|-.+.+|
T Consensus        10 pGD~VeV~~----GEl~~l~G~V~sv~gd~Vti~p~~~dL----~~~l~~p~~~LRK   58 (59)
T 2e6z_A           10 PGDNVEVCE----GELINLQGKILSVDGNKITIMPKHEDL----KDMLEFPAQELRK   58 (59)
T ss_dssp             TTSEEEECS----STTTTCEEEECCCBTTEEEEEECCSSC----CSCEEEETTTEEE
T ss_pred             CCCEEEEEC----CEECCCEEEEEEECCCEEEEEECCCCC----CCEEECCHHHCCC
T ss_conf             999899922----775377999999709989998764236----8615416798336


No 30 
>>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemic lupus erythematosus, SLE; 2.50A {Homo sapiens} (B:)
Probab=44.83  E-value=22  Score=16.27  Aligned_cols=35  Identities=20%  Similarity=0.200  Sum_probs=26.9

Q ss_pred             HHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEE
Q ss_conf             998710568898722668807899998512697-599996
Q gi|254780789|r  109 FLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEK  147 (192)
Q Consensus       109 f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~  147 (192)
                      ...++++.|.|.|+.    .+.|.|+|.++|.. .+.|..
T Consensus        34 l~~~~~k~V~V~L~~----gr~~~G~L~~fD~~mNlvL~d   69 (118)
T 1b34_B           34 QSVKNNTQVLINCRN----NKKLLGRVKAFDRHCNMVLEN   69 (118)
T ss_dssp             HHHHHTCEEEEEETT----SCEEEEEEEEECTTCCEEEEE
T ss_pred             HHHHCCCEEEEEECC----CCEEEEEEEEECCCCEEEEEC
T ss_conf             999769789999779----959999999971000267303


No 31 
>>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemic lupus erythematosus, SLE; 2.50A {Homo sapiens} (A:)
Probab=43.96  E-value=22  Score=16.18  Aligned_cols=62  Identities=16%  Similarity=0.135  Sum_probs=37.0

Q ss_pred             HHHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEECCCCCC---CCCCCEEEEEHHHHHHCCE
Q ss_conf             99998710568898722668807899998512697-599996355456---7777269976887651725
Q gi|254780789|r  107 SDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEKEKRGEK---DMNELQIAISFDSLLSARL  172 (192)
Q Consensus       107 ~~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~~~~~~k---~~~~~~v~ip~~~I~kAkL  172 (192)
                      .-+..++|+.|.|.|++    ...|.|+|.++|+. .+.|........   ...-..+-|-=+.|....+
T Consensus         5 ~~L~~~~g~~V~V~l~n----g~~~~G~L~~~D~~mNi~L~~~~~~~~~~~~~~~~~v~IRG~~I~~i~~   70 (119)
T 1b34_A            5 RFLMKLSHETVTIELKN----GTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFIL   70 (119)
T ss_dssp             HHHHTCTTCEEEEEETT----CCEEEEEEEEECTTCCEEEEEEEEECTTSCCEEEEEEEECGGGEEEEEC
T ss_pred             HHHHHCCCCEEEEEECC----CCEEEEEEEEECCCCEEEEEEEEEECCCCCEEECCCEEECCCEEEEEEC
T ss_conf             99987589869999889----9599999998869926899799999899968874768987987999987


No 32 
>>1gtd_A MTH169; synthetase, FGAM synthetase, purine synthesis pathway, PSI, protein structure initiative, NESG; 2.56A {Methanobacterium thermoautotrophicum} (A:)
Probab=40.83  E-value=25  Score=15.88  Aligned_cols=70  Identities=9%  Similarity=0.181  Sum_probs=42.4

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE
Q ss_conf             4127999999999999747977999999549986899999658778789999999999875202113567650799972
Q gi|254780789|r   18 DMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSS   96 (192)
Q Consensus        18 ~~~i~~~i~~li~p~v~~lG~eLv~v~~~~~~~~~LrI~ID~~dg~i~iddC~~vSr~i~~~LD~~d~i~~~Y~LEVSS   96 (192)
                      ++++-+.=-..+...+..+||++-+|.+-    +.+.+.+|.++..--.+.   +.......  -.+|+-++|..+|.-
T Consensus        12 K~gVlDPqG~aI~~aL~~lG~~V~~VRvG----K~iel~i~~~~~e~a~~~---v~~~c~~l--LaNpvIE~y~i~i~e   81 (85)
T 1gtd_A           12 KKGXLNPEAATIERALALLGYEVEDTDTT----DVITFTXDEDSLEAVERE---VEDXCQRL--LCNPVIHDYDVSINE   81 (85)
T ss_dssp             CTTSCCHHHHHHHHHHHHHTCCCEEEEEE----EEEEEEECCSCHHHHHHH---HHHHHHHT--TCCTTTEEEEEEEEE
T ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCEEEEE----EEEEEEECCCCHHHHHHH---HHHHHHHH--CCCCCEEEEEEEEEE
T ss_conf             89773848999999998659863047876----699999778998999999---99999986--397654789999996


No 33 
>>2fyx_A Transposase, putative; 6457846, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 1.90A {Deinococcus radiodurans R1} (A:23-143)
Probab=39.75  E-value=26  Score=15.78  Aligned_cols=102  Identities=8%  Similarity=0.159  Sum_probs=65.2

Q ss_pred             HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCC
Q ss_conf             0113337610014127999999999999747977999999549986899999658778789999999999875202-113
Q gi|254780789|r    6 FLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD-VEN   84 (192)
Q Consensus         6 ~~~~~~~~r~~~~~~i~~~i~~li~p~v~~lG~eLv~v~~~~~~~~~LrI~ID~~dg~i~iddC~~vSr~i~~~LD-~~d   84 (192)
                      .++++|-..++. ..+.+++.+++..+++..|+++..++...  + -+-++++-+- .+++-+....=+..|...= .+.
T Consensus         6 V~~tKyR~~vl~-~~i~~~l~~~i~~i~~~~~~~i~~~~~~~--D-HVHllv~~~P-~~sis~~i~~lKg~Ssr~i~~~~   80 (121)
T 2fyx_A            6 IWATKYRHQVLV-DEVADGLKDILRDIATQNGLELVALEVMP--D-YVHLLLGATP-QHVIPDFVKALKGASARRMFSAF   80 (121)
T ss_dssp             EEECGGGCCCCC-HHHHHHHHHHHHHHHHHTTCEEEEEEECS--S-EEEEEEEECT-TCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             EECCCCCHHHCC-HHHHHHHHHHHHHHHHHCCCEEEECCCCC--C-CCEEEEECCC-CCCHHHHHHHHCCHHHHHHHHHC
T ss_conf             981377404236-89999999999999975585033324567--7-6216885287-76518999987023788999867


Q ss_pred             -----------CCCCCCEEEEEECCCCCCCCCHHHHHHHHCC
Q ss_conf             -----------5676507999727887744578999987105
Q gi|254780789|r   85 -----------IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGH  115 (192)
Q Consensus        85 -----------~i~~~Y~LEVSSPGidRpL~~~~~f~r~~G~  115 (192)
                                 .-...|.  |+|-|- -++-..++|-++.+.
T Consensus        81 ~~~~k~~~~~~~W~~gYf--~~svg~-~~~~~i~~YI~~Q~~  119 (121)
T 2fyx_A           81 PHLKQPHWGGNLWNPSYC--VLTVSE-HTRAQIQQYIENQHA  119 (121)
T ss_dssp             GGGCCGGGTTSSCCSCEE--EECCCT-THHHHHHHHHHTSCC
T ss_pred             CCCCHHCCCCCEECCCEE--EEECCC-CCHHHHHHHHHHCCC
T ss_conf             421000345550048678--990388-889999999980086


No 34 
>>1qd1_A Formiminotransferase-cyclodeaminase; functional dimer, alpha-beta-BETA-alpha sandwich, electrostatically charged substrate tunnel; HET: FON; 1.70A {Sus scrofa} (A:1-179)
Probab=34.51  E-value=28  Score=15.56  Aligned_cols=50  Identities=16%  Similarity=0.205  Sum_probs=29.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCC-CCC--HHHHHHH
Q ss_conf             78789999999999875202113567650799972788774-457--8999987
Q gi|254780789|r   62 GNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRP-MVR--KSDFLRW  112 (192)
Q Consensus        62 g~i~iddC~~vSr~i~~~LD~~d~i~~~Y~LEVSSPGidRp-L~~--~~~f~r~  112 (192)
                      +++|+++|+.+++.+...+-.+--++- |.-|-+.+--+|. |-.  ..+|+-+
T Consensus        96 ~~~t~eec~~lA~~~g~~i~~~l~vPV-yLYg~Aa~~~~r~~l~~iR~G~~e~l  148 (179)
T 1qd1_A           96 RGVTMDECVRCAQAFGQRLAEELGVPV-YLYGEAARTAGRQSLPALRAGEYEAL  148 (179)
T ss_dssp             ESCCHHHHHHHHHHHHHHHHHHHTCCE-EEEETTCSSGGGSCHHHHHTTHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCE-EEECCCCCCCCCCCHHHHHHCCEECC
T ss_conf             999989999999999999987429857-98602027953133789973255533


No 35 
>>1ug7_A 2610208M17RIK protein; hypothetical protein FLJ12806, four helical UP-and-DOWN bundle, structural genomics; NMR {Mus musculus} (A:)
Probab=33.96  E-value=26  Score=15.80  Aligned_cols=30  Identities=17%  Similarity=0.236  Sum_probs=24.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             5877878999999999987520211356765
Q gi|254780789|r   59 RDDGNMTLRDCEELSQAISPILDVENIIEGH   89 (192)
Q Consensus        59 ~~dg~i~iddC~~vSr~i~~~LD~~d~i~~~   89 (192)
                      ..+| ++++||-++--.+..+|+...+||-+
T Consensus        89 ~~~~-i~ledlkkL~p~l~~ll~~~~eFP~d  118 (128)
T 1ug7_A           89 SQEE-FKLEDLKKLEPILKNILTYNKEFPFD  118 (128)
T ss_dssp             CCCS-CCSHHHHTHHHHHHTTTTCCSCCSSC
T ss_pred             CCCC-CCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             5677-57999998999999773028898740


No 36 
>>1dpg_A G6PD, glucose 6-phosphate dehydrogenase; oxidoreductase, NADP/NAD, glucose metabolism, oxidoreductase (CHOH(D) - NAD(P)); 2.00A {Leuconostoc mesenteroides} (A:1-182)
Probab=33.57  E-value=33  Score=15.17  Aligned_cols=34  Identities=15%  Similarity=0.330  Sum_probs=30.4

Q ss_pred             EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             89999965877878999999999987520211356
Q gi|254780789|r   52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENII   86 (192)
Q Consensus        52 ~LrI~ID~~dg~i~iddC~~vSr~i~~~LD~~d~i   86 (192)
                      ..||.+++|=| -+++.+.++++.|...++++.++
T Consensus       141 ~~RiviEKPfG-~dl~Sa~~ln~~l~~~f~E~qiy  174 (182)
T 1dpg_A          141 YNRLMIEKPFG-TSYDTAAELQNDLENAFDDNQLF  174 (182)
T ss_dssp             CEEEEECSCCC-SSHHHHHHHHHHHTTTCCGGGEE
T ss_pred             CEEEEEECCCC-CCHHHHHHHHHHHHHHCCHHHEE
T ss_conf             55899868887-85361999999998658997830


No 37 
>>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase/antibiotic complex; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A* (A:1-159)
Probab=31.97  E-value=23  Score=16.14  Aligned_cols=46  Identities=15%  Similarity=0.065  Sum_probs=29.5

Q ss_pred             CCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC--CEEEEEEEEC
Q ss_conf             9620101133376100141279999999999997479--7799999954
Q gi|254780789|r    1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMS--FRSVQISLLE   47 (192)
Q Consensus         1 ~~~~~~~~~~~~~r~~~~~~i~~~i~~li~p~v~~lG--~eLv~v~~~~   47 (192)
                      |-|||- ||+++...|..........++++-+++.+.  ..+..|-+.|
T Consensus         1 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~i~~~l~~~~~v~av~L~G   48 (159)
T 3jz0_A            1 MGSSHH-HHHHSSGLVPRGSHMLKQKELIANVKNLTESDERITACMMYG   48 (159)
T ss_dssp             ----------------------CHHHHHHHHHHHHHHHCTTEEEEEECS
T ss_pred             CCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf             997544-433334567441202129999999999970390369999876


No 38 
>>2bh9_A G6PD, glucose-6-phosphate 1-dehydrogenase; oxidoreductase, oxidoreductase (CHOH(D)-NADP), carbohydrate metabolism, glucose metabolism; HET: NAP; 2.5A {Homo sapiens} PDB: 2bhl_A* 1qki_A* (A:1-178)
Probab=29.36  E-value=38  Score=14.73  Aligned_cols=36  Identities=28%  Similarity=0.337  Sum_probs=31.2

Q ss_pred             CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             8689999965877878999999999987520211356
Q gi|254780789|r   50 NLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII   86 (192)
Q Consensus        50 ~~~LrI~ID~~dg~i~iddC~~vSr~i~~~LD~~d~i   86 (192)
                      +...||.+++|=| -+++-+..+++.|...++++.++
T Consensus       136 ~~~~RiviEKPfG-~dl~Sa~~Ln~~l~~~f~E~qIy  171 (178)
T 2bh9_A          136 IGWNRIIVEKPFG-RDLQSSDRLSNHISSLFREDQIY  171 (178)
T ss_dssp             SSCEEEEECSCSC-SSHHHHHHHHHHHTTTSCGGGEE
T ss_pred             CCCCEEEEECCCC-CCHHHHHHHHHHHHHHCCCCHHC
T ss_conf             6762167614433-56787999999999656850120


No 39 
>>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} (A:272-321)
Probab=27.40  E-value=41  Score=14.51  Aligned_cols=45  Identities=18%  Similarity=0.161  Sum_probs=29.6

Q ss_pred             HCCEEEEEEECCCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCEEEE
Q ss_conf             10568898722668807899998512697599996355456777726997
Q gi|254780789|r  113 NGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAI  162 (192)
Q Consensus       113 ~G~~VkV~l~~~~~g~k~~~G~L~~v~~~~i~l~~~~~~~k~~~~~~v~i  162 (192)
                      +|+.|++.+     +...+.|+-.++++++-.+-....+.+...-.++++
T Consensus         1 lGk~V~i~~-----~~~~~~G~a~gId~~G~Llv~~~~g~~~~~sGEVSl   45 (50)
T 1bia_A            1 INRPVKLII-----GDKEIFGISRGIDKQGALLLEQDGIIKPWMGGEISL   45 (50)
T ss_dssp             TTSEEEEEE-----TTEEEEEEEEEECTTSCEEEEETTEEEEESSCEEEE
T ss_pred             CCCEEEEEE-----CCEEEEEEEEEECCCCEEEEEECCEEEEEEEEEEEE
T ss_conf             498699997-----997999999999989829999999199999889998


No 40 
>>2vs7_A I-DMOI, homing endonuclease I-DMOI; protein/nucleic acid crystallography; 2.05A {Desulfurococcus mobilis} PDB: 2vs8_A 1b24_A (A:121-199)
Probab=27.23  E-value=21  Score=16.36  Aligned_cols=36  Identities=17%  Similarity=0.091  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHC-----CCCCCCCCCEEEEEECCCCC
Q ss_conf             9999999999875202-----11356765079997278877
Q gi|254780789|r   66 LRDCEELSQAISPILD-----VENIIEGHYRLEVSSPGIDR  101 (192)
Q Consensus        66 iddC~~vSr~i~~~LD-----~~d~i~~~Y~LEVSSPGidR  101 (192)
                      .--.+-||+.+++.=-     .+|---+-|.||||||--.|
T Consensus        12 ~~LLelV~~WL~~lGi~~tihLDD~RHGVYVL~v~~~~R~r   52 (79)
T 2vs7_A           12 KALLEIVSRWLNNLGVRNTIHLDDHRHGVYVLNISLRDRIK   52 (79)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEECGGGHHH
T ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEECCHHHHH
T ss_conf             99999999999986975899970377866999977816678


No 41 
>>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken structural genomics/proteomics initiative, RSGI, antitumor protein; NMR {Homo sapiens} (A:)
Probab=26.07  E-value=38  Score=14.78  Aligned_cols=41  Identities=20%  Similarity=-0.008  Sum_probs=33.7

Q ss_pred             HHHCCEEEEEEECCCCCEEEEEEEEEECCCCEEEEEECCCC
Q ss_conf             87105688987226688078999985126975999963554
Q gi|254780789|r  111 RWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRG  151 (192)
Q Consensus       111 r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~~i~l~~~~~~  151 (192)
                      -.+|..|.|.-..+..|.=+|.|.+....+..+-++++.+.
T Consensus        18 ~~vG~rV~v~~~~~~~G~vryiG~~~~~~g~~vGVElD~p~   58 (104)
T 1ixd_A           18 LEVGSLAEVKENPPFYGVIRWIGQPPGLNEVLAGLELEDEC   58 (104)
T ss_dssp             CCTTSEEEECSSSCCCEEEEEEECCSSSCCCEEEEEESSCC
T ss_pred             CCCCCEEEECCCCCCEEEEEEEECCCCCCCCEEEEEECCCC
T ss_conf             82689889899896079998973689989738999966888


No 42 
>>2yx5_A UPF0062 protein MJ1593; anti parallel beta sheet, NPPSFA, national project on protein structural and functional analyses; 2.30A {Methanocaldococcus jannaschii} (A:)
Probab=23.58  E-value=46  Score=14.24  Aligned_cols=69  Identities=17%  Similarity=0.351  Sum_probs=39.9

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCE-EEEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE
Q ss_conf             4127999999999999747977-99999954998689999965877878999999999987520211356765079997
Q gi|254780789|r   18 DMGLAGDISSVIQPVIEEMSFR-SVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVS   95 (192)
Q Consensus        18 ~~~i~~~i~~li~p~v~~lG~e-Lv~v~~~~~~~~~LrI~ID~~dg~i~iddC~~vSr~i~~~LD~~d~i~~~Y~LEVS   95 (192)
                      ++++-+.--+.+...+..+||. +-+|.    -++.+.+.++..+..-..+....+.+.    | -.+|+-+.|..+|+
T Consensus        11 K~gVlDPqG~ai~~al~~lG~~~V~~vR----vgK~~~~~i~~~~~e~a~~~v~~i~~~----L-LaNpvIe~y~i~i~   80 (83)
T 2yx5_A           11 KKGVLNPEGRTIQRALNFLGFNNVKEVQ----TYKMIDIIMEGENEEKVKEEVEEMCKK----L-LANPVIHDYEIKVE   80 (83)
T ss_dssp             CTTCCCHHHHHHHHHHHHTTCTTCCCCC----CCEEEEEEEC-CCHHHHHHHHHHHHHH----T-TCCTTTEEEEEEEE
T ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCEEE----EEEEEEEEECCCCHHHHHHHHHHHHHH----H-CCCCCEEEEEEEEE
T ss_conf             9977382799999999864975666357----555999998579989999999999998----6-39864378999999


No 43 
>>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} (B:194-274)
Probab=22.81  E-value=40  Score=14.61  Aligned_cols=19  Identities=21%  Similarity=0.518  Sum_probs=13.9

Q ss_pred             CCCCCCCCEEEEEECCCCC
Q ss_conf             1356765079997278877
Q gi|254780789|r   83 ENIIEGHYRLEVSSPGIDR  101 (192)
Q Consensus        83 ~d~i~~~Y~LEVSSPGidR  101 (192)
                      .++-++.|.|.||.+|...
T Consensus        45 ~~l~~G~Y~l~vs~~Gy~~   63 (81)
T 1ti6_B           45 DALDNGEYTVEIDADGKSY   63 (81)
T ss_dssp             EEECSEEEEEEEEETTEEE
T ss_pred             CCCCCCEEEEEEEECCCCE
T ss_conf             6514860699998278760


No 44 
>>1uty_A Non-structural protein 2; viral protein, RNA binding protein; 2.4A {Bluetongue virus} (A:)
Probab=21.94  E-value=21  Score=16.32  Aligned_cols=36  Identities=28%  Similarity=0.367  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHH-----------HHC-CCCCCCCCCEEEEEECCCCCCC
Q ss_conf             99999999875-----------202-1135676507999727887744
Q gi|254780789|r   68 DCEELSQAISP-----------ILD-VENIIEGHYRLEVSSPGIDRPM  103 (192)
Q Consensus        68 dC~~vSr~i~~-----------~LD-~~d~i~~~Y~LEVSSPGidRpL  103 (192)
                      -|-.+++..+.           .+. +..|.+..|.|||+-||.-|-.
T Consensus        22 ~cG~iak~~~~~Y~qVKiGr~~~~~~v~~P~Pk~yVleI~~~gayRIq   69 (187)
T 1uty_A           22 LCGAIAKLSSQPYCQIKIGRVVAFKPVKNPEPKGYVLNVPGPGAYRIQ   69 (187)
T ss_dssp             HHHHHHHHTTCSEEEEEESSSCEEEEESSCCTTCEEEECSSSEEEEEE
T ss_pred             HHHHHHHHHCCCEEEEEECCEEEEEECCCCCCCEEEEEECCCCEEEEE
T ss_conf             689999862797089997457886261899997389993688568987


No 45 
>>1tt9_A Formimidoyltransferase-cyclodeaminase (formiminotransferase- cyclodeaminase) (FTCD)...; hepatitis autoantigen, intermediate channeling; 3.42A {Rattus norvegicus} PDB: 2pfd_A (A:1-180)
Probab=21.88  E-value=53  Score=13.86  Aligned_cols=70  Identities=9%  Similarity=0.028  Sum_probs=38.3

Q ss_pred             CCEEEEEEEECCCCCE---EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE-CCCCCCCCCHH
Q ss_conf             9779999995499868---99999658778789999999999875202113567650799972-78877445789
Q gi|254780789|r   37 SFRSVQISLLEEKNLL---LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSS-PGIDRPMVRKS  107 (192)
Q Consensus        37 G~eLv~v~~~~~~~~~---LrI~ID~~dg~i~iddC~~vSr~i~~~LD~~d~i~~~Y~LEVSS-PGidRpL~~~~  107 (192)
                      -++++|++.+.+.++.   +-+.--.|=+++|+++|..+++.+...+-.+--++- |.-|-+. ..--|+|-..|
T Consensus        69 A~~~IDm~~H~G~HPR~GavDvipf~Pl~~~t~eec~~lA~~~g~~ig~~l~vPV-yLYg~Aa~~p~r~~L~~iR  142 (180)
T 1tt9_A           69 ASQLIDXRKHKGEHPRXGALDVCPFIPVRGVSXDECVLCAKAFGQRLAEELNVPV-YLYGEAAQXPSRQTLPAIR  142 (180)
T ss_pred             HHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCE-EEEHHHCCCCCCCCHHHHH
T ss_conf             9985574447787998974252200127999999999999999999985269866-8623303895325578897


Done!