BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780789|ref|YP_003065202.1| hypothetical protein CLIBASIA_03400 [Candidatus Liberibacter asiaticus str. psy62] (192 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780789|ref|YP_003065202.1| hypothetical protein CLIBASIA_03400 [Candidatus Liberibacter asiaticus str. psy62] gi|254040466|gb|ACT57262.1| hypothetical protein CLIBASIA_03400 [Candidatus Liberibacter asiaticus str. psy62] Length = 192 Score = 390 bits (1003), Expect = e-107, Method: Compositional matrix adjust. Identities = 192/192 (100%), Positives = 192/192 (100%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD Sbjct: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE Sbjct: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR Sbjct: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 Query: 181 ASLNNYGSYAGL 192 ASLNNYGSYAGL Sbjct: 181 ASLNNYGSYAGL 192 >gi|315122011|ref|YP_004062500.1| hypothetical protein CKC_01305 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495413|gb|ADR52012.1| hypothetical protein CKC_01305 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 186 Score = 280 bits (717), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 134/184 (72%), Positives = 159/184 (86%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 MESTH SKYEPRIFGD+GL D+S++IQPVIEEM FR VQ+SLLEE+NL+LQI VERD Sbjct: 1 MESTHVFCSKYEPRIFGDVGLGQDVSNIIQPVIEEMGFRIVQVSLLEERNLILQILVERD 60 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 +G MTL DCEE+S+AISPILDVENIIE HY+LE+SSPGI+RPMVRKSDF RWNGH+VACE Sbjct: 61 NGTMTLCDCEEVSKAISPILDVENIIEEHYQLEISSPGINRPMVRKSDFERWNGHIVACE 120 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 + SSGDK+KL+GKI+G S+ FFLEK++ KD QIA+SFDSLLSA+L++TDELL Sbjct: 121 VASSSGDKKKLVGKIVGKSDLDFFLEKKEEDLKDAGVSQIAVSFDSLLSAKLVITDELLC 180 Query: 181 ASLN 184 ASLN Sbjct: 181 ASLN 184 >gi|15963989|ref|NP_384342.1| hypothetical protein SMc02911 [Sinorhizobium meliloti 1021] gi|307306401|ref|ZP_07586145.1| protein of unknown function DUF150 [Sinorhizobium meliloti BL225C] gi|307319288|ref|ZP_07598717.1| protein of unknown function DUF150 [Sinorhizobium meliloti AK83] gi|34222989|sp|Q92SW6|RIMP_RHIME RecName: Full=Ribosome maturation factor rimP gi|15073165|emb|CAC41673.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021] gi|306895124|gb|EFN25881.1| protein of unknown function DUF150 [Sinorhizobium meliloti AK83] gi|306902243|gb|EFN32840.1| protein of unknown function DUF150 [Sinorhizobium meliloti BL225C] Length = 205 Score = 174 bits (441), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 84/180 (46%), Positives = 121/180 (67%), Gaps = 2/180 (1%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 M T + EPR+ + GL ++ +I+PV+ +M FR V++ + + L LQ+ ER+ Sbjct: 1 MSDTTTAENTNEPRLITETGLDRRVADIIEPVLVDMGFRLVRVRMSGQNGLTLQVMTERN 60 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 DG MT+ DCEE+S+AISP+LDVE+ I+ Y LEVSSPGIDRPMVR+SDF+RW GH+V CE Sbjct: 61 DGTMTVEDCEEVSKAISPVLDVEDPIDKAYHLEVSSPGIDRPMVRRSDFIRWQGHLVKCE 120 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 + +++ GKI+ E GF LE+++ + E +AI F +L ARLI+TDEL+R Sbjct: 121 TSVMVDGRKRFRGKIVSVDEDGFRLERDQPAYGE--EAAVAIPFTALSEARLILTDELIR 178 >gi|327192407|gb|EGE59367.1| hypothetical protein RHECNPAF_224004 [Rhizobium etli CNPAF512] Length = 201 Score = 172 bits (435), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 81/177 (45%), Positives = 125/177 (70%), Gaps = 6/177 (3%) Query: 9 SKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRD 68 ++ EPR+ + GL ++ +I+PV+ M FR +++ +L + + +Q+ ER+DG MT++D Sbjct: 9 NELEPRLITETGLDQRLADIIEPVLVGMGFRLIRVRMLNQNGMTMQVMAERNDGTMTVQD 68 Query: 69 CEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 CEE+S AISP+LDVE+ I+ Y LEVSSPGIDRPMVRKSDF+RW GH+V CE + G++ Sbjct: 69 CEEVSMAISPVLDVEDPIDKEYHLEVSSPGIDRPMVRKSDFVRWQGHLVKCETSIMIGNR 128 Query: 129 QKLIGKIMGTSETGFFLEKEK--RGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 ++ GKI+ GF LE+++ GE E +++I F +L A+LI+TD+L+R +L Sbjct: 129 KRFRGKIVEADADGFTLERDQIAYGE----EPKVSIPFTALSDAKLILTDDLIRDAL 181 >gi|190889788|ref|YP_001976330.1| hypothetical protein RHECIAT_CH0000156 [Rhizobium etli CIAT 652] gi|259586183|sp|B3PXE6|RIMP_RHIE6 RecName: Full=Ribosome maturation factor rimP gi|190695067|gb|ACE89152.1| hypothetical conserved protein [Rhizobium etli CIAT 652] Length = 198 Score = 172 bits (435), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 81/177 (45%), Positives = 125/177 (70%), Gaps = 6/177 (3%) Query: 9 SKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRD 68 ++ EPR+ + GL ++ +I+PV+ M FR +++ +L + + +Q+ ER+DG MT++D Sbjct: 6 NELEPRLITETGLDQRLADIIEPVLVGMGFRLIRVRMLNQNGMTMQVMAERNDGTMTVQD 65 Query: 69 CEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 CEE+S AISP+LDVE+ I+ Y LEVSSPGIDRPMVRKSDF+RW GH+V CE + G++ Sbjct: 66 CEEVSMAISPVLDVEDPIDKEYHLEVSSPGIDRPMVRKSDFVRWQGHLVKCETSIMIGNR 125 Query: 129 QKLIGKIMGTSETGFFLEKEK--RGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 ++ GKI+ GF LE+++ GE E +++I F +L A+LI+TD+L+R +L Sbjct: 126 KRFRGKIVEADADGFTLERDQIAYGE----EPKVSIPFTALSDAKLILTDDLIRDAL 178 >gi|259585712|sp|B9JGT7|RIMP_AGRRK RecName: Full=Ribosome maturation factor rimP Length = 198 Score = 171 bits (432), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 81/174 (46%), Positives = 123/174 (70%), Gaps = 6/174 (3%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 EPR+ + GL I+++I+PVI M +R V++ L+ + L LQ+ ER+DG+M ++ CEE Sbjct: 9 EPRLIVETGLDQRIAAIIEPVIVGMDYRLVRVRLMNQNGLTLQVMAERNDGSMNVQGCEE 68 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S AISP+LDVE+ ++ Y LEVSSPGIDRPMVRKSDF+RWNGH+V CE + ++++ Sbjct: 69 ISTAISPVLDVEDPVDKAYHLEVSSPGIDRPMVRKSDFVRWNGHIVKCETSILVDNRKRF 128 Query: 132 IGKIMGTSETGFFLEKEK--RGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 GKI ++ GF +E+++ GE E ++ I F +L A+LI+TD+L+R +L Sbjct: 129 RGKITDVNDDGFTIERDQVAYGE----EPKVTIPFSTLAEAKLILTDDLIRDAL 178 >gi|222084329|ref|YP_002542858.1| hypothetical protein Arad_0177 [Agrobacterium radiobacter K84] gi|221721777|gb|ACM24933.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 246 Score = 170 bits (431), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 79/172 (45%), Positives = 122/172 (70%), Gaps = 2/172 (1%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 EPR+ + GL I+++I+PVI M +R V++ L+ + L LQ+ ER+DG+M ++ CEE Sbjct: 57 EPRLIVETGLDQRIAAIIEPVIVGMDYRLVRVRLMNQNGLTLQVMAERNDGSMNVQGCEE 116 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S AISP+LDVE+ ++ Y LEVSSPGIDRPMVRKSDF+RWNGH+V CE + ++++ Sbjct: 117 ISTAISPVLDVEDPVDKAYHLEVSSPGIDRPMVRKSDFVRWNGHIVKCETSILVDNRKRF 176 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 GKI ++ GF +E+++ + E ++ I F +L A+LI+TD+L+R +L Sbjct: 177 RGKITDVNDDGFTIERDQVAYGE--EPKVTIPFSTLAEAKLILTDDLIRDAL 226 >gi|86355779|ref|YP_467671.1| hypothetical protein RHE_CH00119 [Rhizobium etli CFN 42] gi|123513435|sp|Q2KDZ2|RIMP_RHIEC RecName: Full=Ribosome maturation factor rimP gi|86279881|gb|ABC88944.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 198 Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 81/177 (45%), Positives = 123/177 (69%), Gaps = 6/177 (3%) Query: 9 SKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRD 68 ++ EPR+ + GL ++ +I+PV+ M FR +++ +L + +Q+ ER+DG MT++D Sbjct: 6 NELEPRLITETGLDQRLADIIEPVLVGMGFRLIRVRMLNQNGATMQVMAERNDGTMTVQD 65 Query: 69 CEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 CEE+S AISP+LDVE+ I+ Y LEVSSPGIDRPMVRKSDF+RW GH+V CE + G++ Sbjct: 66 CEEVSMAISPVLDVEDPIDKEYHLEVSSPGIDRPMVRKSDFVRWQGHLVKCETSIMIGNR 125 Query: 129 QKLIGKIMGTSETGFFLEKEK--RGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 ++ GKI+ GF LE+++ GE E ++ I F +L A+LI+TD+L+R +L Sbjct: 126 KRFRGKIVEADADGFTLERDQVAYGE----EQKVIIPFTALSDAKLILTDDLIRDAL 178 >gi|227824068|ref|YP_002828041.1| hypothetical protein NGR_c35650 [Sinorhizobium fredii NGR234] gi|254765072|sp|C3MC63|RIMP_RHISN RecName: Full=Ribosome maturation factor rimP gi|227343070|gb|ACP27288.1| conserved hypothetical protein [Sinorhizobium fredii NGR234] Length = 205 Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 81/169 (47%), Positives = 118/169 (69%), Gaps = 2/169 (1%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 EPR+ + GL I+ +I+PV+ +M FR V++ + + L LQI ER+DG MT+ DCE+ Sbjct: 12 EPRLITETGLDRRIADIIEPVLVQMGFRLVRVRMSGQNGLTLQIMTERNDGTMTVEDCED 71 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+A+SP+LDVE+ I+ Y LEVSSPGIDRPMVRKSDF+RW GH++ CE + +++ Sbjct: 72 VSKAVSPVLDVEDPIDKAYHLEVSSPGIDRPMVRKSDFVRWQGHLMKCETSIMVDGRKRF 131 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 GKI+ E GF LE+++ + E +AI F +L ARLI+TD+L+R Sbjct: 132 RGKIVSVDEEGFRLERDQPAYGE--EAVVAIPFTALSDARLILTDDLIR 178 >gi|241207072|ref|YP_002978168.1| hypothetical protein Rleg_4390 [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860962|gb|ACS58629.1| protein of unknown function DUF150 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 201 Score = 168 bits (425), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 78/177 (44%), Positives = 123/177 (69%), Gaps = 6/177 (3%) Query: 9 SKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRD 68 ++ EPR+ + GL ++ +I+PV+ ++ FR +++ ++ + +Q+ ERDDG MT++D Sbjct: 9 NEREPRLITETGLDQRLADIIEPVLVDLGFRLIRVRMMNQNGATMQVMAERDDGTMTVQD 68 Query: 69 CEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 CEE+S AISP+LDVE+ ++ Y LEVSSPGIDRPMVRKSDF+RW GH+V CE + ++ Sbjct: 69 CEEVSMAISPVLDVEDPVDKEYHLEVSSPGIDRPMVRKSDFVRWQGHLVKCETSILIDNR 128 Query: 129 QKLIGKIMGTSETGFFLEKEK--RGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 ++ GKI+ GF LE+++ GE E ++ I F +L A+LI+TD+L+R +L Sbjct: 129 KRFRGKIVEAGTDGFTLERDQIAYGE----EQKVTIPFTALSDAKLILTDDLIRDAL 181 >gi|150398624|ref|YP_001329091.1| hypothetical protein Smed_3438 [Sinorhizobium medicae WSM419] gi|166990840|sp|A6UF26|RIMP_SINMW RecName: Full=Ribosome maturation factor rimP gi|150030139|gb|ABR62256.1| protein of unknown function DUF150 [Sinorhizobium medicae WSM419] Length = 205 Score = 167 bits (423), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 81/180 (45%), Positives = 120/180 (66%), Gaps = 2/180 (1%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 M T + EPR+ + GL ++ +I+PV+ ++ FR V++ + + L LQ+ ER+ Sbjct: 1 MSDTTTAENANEPRLITETGLDRRVADIIEPVLVDLGFRLVRVRMSGQNGLTLQVMTERN 60 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 DG MT+ DCEE+S+AISP+LDVE+ I+ Y LEVSSPGIDRPMVR+SDF+RW GH++ CE Sbjct: 61 DGTMTVEDCEEVSKAISPVLDVEDPIDKAYHLEVSSPGIDRPMVRRSDFIRWQGHLLKCE 120 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 + +++ GKI+ E GF LE+++ + E + I F +L ARLI+TDEL+R Sbjct: 121 TSVLVEGRKRFRGKIVSVDEDGFRLERDQPAYGE--EAGVTIPFTALSEARLILTDELIR 178 >gi|116249894|ref|YP_765732.1| hypothetical protein RL0128 [Rhizobium leguminosarum bv. viciae 3841] gi|166977860|sp|Q1MN36|RIMP_RHIL3 RecName: Full=Ribosome maturation factor rimP gi|115254542|emb|CAK05616.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 201 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 77/177 (43%), Positives = 123/177 (69%), Gaps = 6/177 (3%) Query: 9 SKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRD 68 ++ EPR+ + GL ++ +I+PV+ ++ FR +++ ++ + +Q+ ER+DG MT++D Sbjct: 9 NEREPRLITETGLDQRLADIIEPVLVDLGFRLIRVRMMNQNGATMQVMAERNDGTMTVQD 68 Query: 69 CEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 CEE+S AISP+LDVE+ ++ Y LEVSSPGIDRPMVRKSDF+RW GH+V CE + ++ Sbjct: 69 CEEVSMAISPVLDVEDPVDKEYHLEVSSPGIDRPMVRKSDFVRWQGHLVKCETSILIDNR 128 Query: 129 QKLIGKIMGTSETGFFLEKEK--RGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 ++ GKI+ GF LE+++ GE E ++ I F +L A+LI+TD+L+R +L Sbjct: 129 KRFRGKIVEAGTDGFTLERDQIAYGE----EQKVTIPFTALSDAKLILTDDLIRDAL 181 >gi|319406548|emb|CBI80190.1| conserved hypothetical protein [Bartonella sp. 1-1C] Length = 225 Score = 164 bits (416), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 82/172 (47%), Positives = 118/172 (68%), Gaps = 2/172 (1%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 EPR+F + G+A +S++I P+++ + FR V+ LL L LQI VER +G MT+ DCE Sbjct: 29 EPRLFEEDGVAARVSALIIPLLKPLGFRLVRTKLLGLNGLTLQIMVERTNGTMTIEDCEI 88 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+A++P+LDVENIIE Y LEVSSPGIDRP+VRKSDF+ W GH+ E +QKL Sbjct: 89 VSRAVAPLLDVENIIERKYHLEVSSPGIDRPLVRKSDFIHWQGHLAKIETSTIIDGRQKL 148 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 GK+ ++ GF L EK ++ ++ + ISF ++ +A LI+TDEL+R +L Sbjct: 149 RGKLKDITQNGFTLNIEKTAHRE--KVNVFISFSNITNAHLILTDELIRDTL 198 >gi|209551641|ref|YP_002283558.1| hypothetical protein Rleg2_4070 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|226706118|sp|B5ZW32|RIMP_RHILW RecName: Full=Ribosome maturation factor rimP gi|209537397|gb|ACI57332.1| protein of unknown function DUF150 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 201 Score = 164 bits (415), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 78/177 (44%), Positives = 123/177 (69%), Gaps = 6/177 (3%) Query: 9 SKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRD 68 ++ EPR+ + GL ++ +I+PV+ + FR +++ +L + + +Q+ ER+DG MT++D Sbjct: 9 NELEPRLITETGLDQRLADIIEPVLIGIGFRLIRVRMLNQNGVTMQVMAERNDGTMTVQD 68 Query: 69 CEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 CEE+S AISP+LDVE+ ++ Y LEVSSPGIDRPMVRKSDF+RW GH+V CE + ++ Sbjct: 69 CEEVSMAISPVLDVEDPVDKEYHLEVSSPGIDRPMVRKSDFVRWQGHLVKCETSILIDNR 128 Query: 129 QKLIGKIMGTSETGFFLEKEK--RGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 ++ GKI+ GF LE+++ GE E ++ I F +L A+LI+TD+L+R +L Sbjct: 129 KRFRGKIVEAGVDGFTLERDQVAYGE----EQKVTIPFTALSDAKLILTDDLIRDAL 181 >gi|319898340|ref|YP_004158433.1| hypothetical protein BARCL_0162 [Bartonella clarridgeiae 73] gi|319402304|emb|CBI75843.1| conserved protein of unknown function [Bartonella clarridgeiae 73] Length = 207 Score = 163 bits (413), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 79/178 (44%), Positives = 118/178 (66%), Gaps = 3/178 (1%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 EPR+F + G+A ++++I P+++ + FR V+I LL L LQI ER +G MT+ DCE Sbjct: 32 EPRLFEEDGIAARVAALIAPLLKPLGFRLVRIKLLGLNGLTLQIMAERANGTMTIEDCET 91 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+ ++P+LD+ENIIE Y LE+SSPGIDRP+VRKSDF W GH+ E + +QK Sbjct: 92 VSRTVAPLLDIENIIERKYHLEISSPGIDRPLVRKSDFFHWQGHLAKIETSTAINGRQKF 151 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL-NNYGS 188 GK++ ++ GF L +K D E+ ISF ++ +A L++TDEL+R +L NY + Sbjct: 152 RGKLINVAQNGFTLNIDKTA--DGEEMHEFISFSNITNAHLVLTDELIRDTLKKNYNN 207 >gi|222147146|ref|YP_002548103.1| hypothetical protein Avi_0164 [Agrobacterium vitis S4] gi|259585691|sp|B9JYK3|RIMP_AGRVS RecName: Full=Ribosome maturation factor rimP gi|221734136|gb|ACM35099.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 204 Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 79/172 (45%), Positives = 116/172 (67%), Gaps = 2/172 (1%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 EPR+ + GL I+ +I+PVI E+ F V++ +L + + LQI ER DG MT+ DCEE Sbjct: 12 EPRLITETGLDRRIADIIEPVIVELGFELVRVRILNQNGMTLQIMAERKDGTMTVEDCEE 71 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 LS AISP+LDVE+ ++ Y LEVSSPGIDRPMVR SDF RW G+++ CE + ++++ Sbjct: 72 LSMAISPVLDVEDPVDKEYHLEVSSPGIDRPMVRASDFTRWQGNLLKCETSILIDNRKRF 131 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 GKI + GF LE+++ + E ++ I F +L A+LI+TD+L+R +L Sbjct: 132 RGKIADVTPDGFILERDQVAYGE--EPRLTIPFTALAEAKLILTDDLVRDAL 181 >gi|319405102|emb|CBI78706.1| conserved hypothetical protein [Bartonella sp. AR 15-3] Length = 207 Score = 161 bits (408), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 80/180 (44%), Positives = 116/180 (64%), Gaps = 2/180 (1%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 EPR+F + G+A +S++I P+++ + F + LL L LQI VER +G MT++DCE Sbjct: 29 EPRLFEEDGVAARVSALIIPLLKPLGFHLICTKLLSLNGLTLQIMVERTNGTMTIKDCEI 88 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+ ++P+LD+ENIIE Y LEVSSPGIDRP+VRKSDF W GH+ E +QK Sbjct: 89 VSRTVAPLLDIENIIERKYHLEVSSPGIDRPLVRKSDFFHWQGHLAKIETSTIIDGRQKF 148 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAG 191 GK+ +++GF L EK +++ E I I F ++ +ARLI+TDEL+R +L A Sbjct: 149 RGKLTDITQSGFTLNIEKTADRE--EANIFIPFSNITNARLILTDELIRDTLKKNKDCAN 206 >gi|319403632|emb|CBI77217.1| conserved hypothetical protein [Bartonella rochalimae ATCC BAA-1498] Length = 225 Score = 160 bits (406), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 80/172 (46%), Positives = 117/172 (68%), Gaps = 2/172 (1%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 EPR+F + G+A +S++I P+++ + FR V+ LL L LQI VER +G MT+ DCE Sbjct: 29 EPRLFEEDGVAARVSALIIPLLKPLGFRLVRTKLLGLNGLTLQIMVERTNGTMTIEDCEI 88 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+A++P+LD+EN+IE Y LE+SSPGIDR +VRKSDF+ W GH+ E +QKL Sbjct: 89 VSRAVAPLLDIENVIERKYHLEISSPGIDRLLVRKSDFVHWQGHLAKIETNTVIDGRQKL 148 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 GK+ ++ GF L EK ++ E+ I ISF ++ +A LI+TDEL+R +L Sbjct: 149 RGKLKDITQNGFTLNIEKTAHRE--EINIFISFSNITNAHLILTDELIRDTL 198 >gi|163757747|ref|ZP_02164836.1| hypothetical protein HPDFL43_20092 [Hoeflea phototrophica DFL-43] gi|162285249|gb|EDQ35531.1| hypothetical protein HPDFL43_20092 [Hoeflea phototrophica DFL-43] Length = 205 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 79/182 (43%), Positives = 117/182 (64%), Gaps = 6/182 (3%) Query: 4 THFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN 63 T S YEPR+ + G+ I+ +++PV+ + R V++ L + L LQI ER DG Sbjct: 2 TDNAASAYEPRLVTETGVDARIAEIVEPVLASIDMRLVRVRLSGQNGLTLQIMAERTDGT 61 Query: 64 MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVL 123 MT+ DCE S+A+SP+LDVE+ +E Y LE+SSPGIDRP+VRKSDF RW GH+ C+ + Sbjct: 62 MTVEDCEAASRALSPVLDVEDPVEKAYHLEISSPGIDRPLVRKSDFERWQGHLARCDASV 121 Query: 124 SSGDKQKLIGKIMGTSETGFFLEKEKR--GEKDMNELQIAISFDSLLSARLIVTDELLRA 181 +++ G I S+TGF +E+++ GE++ E I F +L A+L++TDEL+R Sbjct: 122 LINGRKRFRGFIRDVSDTGFIVERDQPVYGEENRAE----IPFSALAEAKLVLTDELIRE 177 Query: 182 SL 183 SL Sbjct: 178 SL 179 >gi|49475030|ref|YP_033071.1| hypothetical protein BH02180 [Bartonella henselae str. Houston-1] gi|51316602|sp|Q6G4W4|RIMP_BARHE RecName: Full=Ribosome maturation factor rimP gi|49237835|emb|CAF27030.1| hypothetical protein BH02180 [Bartonella henselae str. Houston-1] Length = 216 Score = 157 bits (397), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 76/183 (41%), Positives = 116/183 (63%), Gaps = 2/183 (1%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 M T + EPR+F + G+ I++ + P+++ + FR V++ LL L LQI VER Sbjct: 9 MSKTERISDIDEPRLFEENGVEAHIAAFVMPLLKPLGFRLVRVKLLGLNGLTLQIMVERP 68 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 DG+MT+ DCE +S+ +SP+LDV+N+IE Y LE+SSPGIDRP+VRKSDF W GH+ E Sbjct: 69 DGSMTVEDCETVSRTVSPLLDVQNVIERKYHLEISSPGIDRPLVRKSDFFHWQGHIAKIE 128 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 + ++K G + ++ GF L +K + + I+I FD ++ A L++TDEL+R Sbjct: 129 TKIILEGRRKFRGTLTNITQDGFTLNTDKAAYGE--SMYISIPFDDIIDAHLVLTDELIR 186 Query: 181 ASL 183 +L Sbjct: 187 DAL 189 >gi|49473873|ref|YP_031915.1| hypothetical protein BQ02060 [Bartonella quintana str. Toulouse] gi|51316597|sp|Q6G0N9|RIMP_BARQU RecName: Full=Ribosome maturation factor rimP gi|49239376|emb|CAF25709.1| hypothetical protein BQ02060 [Bartonella quintana str. Toulouse] Length = 216 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 74/183 (40%), Positives = 119/183 (65%), Gaps = 2/183 (1%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 M T ++ EPR+F + G+ +++++ P+++ + FR V++ LL + L LQI VER Sbjct: 9 MRKTEKMNDIDEPRLFEETGIEAFVAALVIPLLKPLDFRLVRVKLLGQNGLTLQIMVERA 68 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 DG+MT+ DCE +S+ +S +LDV+N+IE Y LE+SSPGIDRP+VRKSDF W GH+ E Sbjct: 69 DGSMTIEDCETVSRTVSHLLDVQNVIERKYHLEISSPGIDRPLVRKSDFFHWQGHIAKIE 128 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 ++ ++K G + ++ G L +K + + IAI FD+++ A L++TDEL+R Sbjct: 129 TKITIDGRKKFRGILANITQEGLTLNTDKAAYGEA--MYIAIPFDNIIDAHLVLTDELIR 186 Query: 181 ASL 183 +L Sbjct: 187 NAL 189 >gi|240849884|ref|YP_002971272.1| hypothetical protein Bgr_02280 [Bartonella grahamii as4aup] gi|240267007|gb|ACS50595.1| hypothetical protein Bgr_02280 [Bartonella grahamii as4aup] Length = 216 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 72/172 (41%), Positives = 115/172 (66%), Gaps = 2/172 (1%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 EPR+F + G+ +++++ P+++ + FR V++ LL + L LQI VER DG+MT+ DCE Sbjct: 20 EPRLFEEDGIEAQVAALVIPLLKPLGFRLVRVKLLGQNGLTLQIMVERADGSMTVEDCET 79 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+ +SP+LDV+N+IE Y LE+SSPGIDRP+VRKSDF W GH+ E ++ ++K Sbjct: 80 VSRTVSPLLDVQNVIERKYHLEISSPGIDRPLVRKSDFFHWQGHLAKIETKITIDGRRKF 139 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 G + ++ GF L +K + + ISF +++A L++TDEL+R +L Sbjct: 140 RGTLTNITQDGFILNTDKAAYGEA--MYTPISFCDIINAHLVLTDELIRDAL 189 >gi|163867514|ref|YP_001608713.1| hypothetical protein Btr_0242 [Bartonella tribocorum CIP 105476] gi|259585727|sp|A9IMU4|RIMP_BART1 RecName: Full=Ribosome maturation factor rimP gi|161017160|emb|CAK00718.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476] Length = 208 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 72/172 (41%), Positives = 115/172 (66%), Gaps = 2/172 (1%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 EPR+F + G+ +++++ P+++ + FR V++ LL + L LQI VER DG++T+ DCE Sbjct: 12 EPRLFEEDGIEARVAALVIPLLKPLGFRLVRVKLLGQNGLTLQIMVERADGSLTVEDCET 71 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+ +SP+LDVEN+IE Y LE+SSPGIDRP+VRKSDF W GH+ E ++ ++K Sbjct: 72 VSRTVSPLLDVENVIERKYHLEISSPGIDRPLVRKSDFFHWQGHLAKIETKITIDGRRKF 131 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 G + ++ GF L +K + + +ISF ++ A L++TDEL+R +L Sbjct: 132 RGTLTNITQDGFILNADKAAYGEA--MYTSISFCDIIGAHLVLTDELIRDAL 181 >gi|260461983|ref|ZP_05810228.1| protein of unknown function DUF150 [Mesorhizobium opportunistum WSM2075] gi|259032230|gb|EEW33496.1| protein of unknown function DUF150 [Mesorhizobium opportunistum WSM2075] Length = 215 Score = 154 bits (389), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 76/179 (42%), Positives = 116/179 (64%), Gaps = 2/179 (1%) Query: 7 LHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTL 66 + S+ + RI + G+ I+ +IQPV+ + FR V++ L + L LQI ER+DG MT+ Sbjct: 4 MTSEGDDRIIRESGIDARIALIIQPVLRGIGFRLVRVHLSGQNGLTLQIMAEREDGTMTV 63 Query: 67 RDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 DCEE+S+A+SP LDV++ IE Y LEVSSPGIDRP+VRKSDF+ W GH+V E + Sbjct: 64 EDCEEVSRAVSPALDVDDPIEKAYHLEVSSPGIDRPLVRKSDFVTWTGHLVKMETSVVVA 123 Query: 127 DKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 D+++ GKI E +E++K + E + + +D++ RLI+TD+L+R +L+ Sbjct: 124 DRKRFKGKIAEAGENDVLIERDKAAYGE--EPTVRVPYDAISETRLILTDDLIRDALSK 180 >gi|325291534|ref|YP_004277398.1| hypothetical protein AGROH133_02929 [Agrobacterium sp. H13-3] gi|325059387|gb|ADY63078.1| hypothetical protein AGROH133_02929 [Agrobacterium sp. H13-3] Length = 198 Score = 154 bits (388), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 75/173 (43%), Positives = 113/173 (65%), Gaps = 2/173 (1%) Query: 11 YEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCE 70 +EPR+ + G+ I+ +I+PV+ M + V++ L + + LQ+ ER+DG MT+ CE Sbjct: 6 HEPRLITETGIDQRIAEIIEPVLTGMGYLLVRVRLSNQNGMTLQVMAEREDGTMTVEGCE 65 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 +S AISP+LDVE+ ++ Y LEVSSPGIDRPMVRKSDF RW GH+V E + ++++ Sbjct: 66 AVSMAISPVLDVEDPVDKAYHLEVSSPGIDRPMVRKSDFTRWQGHLVKAETSILVENRKR 125 Query: 131 LIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 GKI+ GF LE+++ D E + I F +L A+LI+TD+L+R +L Sbjct: 126 FRGKIVEVDADGFKLERDQIAYGD--EPTVTIPFSALSDAKLILTDDLIRDAL 176 >gi|13474626|ref|NP_106195.1| hypothetical protein mlr5550 [Mesorhizobium loti MAFF303099] gi|34223133|sp|Q98BJ1|RIMP_RHILO RecName: Full=Ribosome maturation factor rimP gi|14025380|dbj|BAB51981.1| mlr5550 [Mesorhizobium loti MAFF303099] Length = 215 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 75/177 (42%), Positives = 115/177 (64%), Gaps = 2/177 (1%) Query: 9 SKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRD 68 S+ + RI + G+ I+ ++QPV+ + FR V++ L + L LQI ER+DG MT+ D Sbjct: 6 SEGDDRIIRESGIDARIALIVQPVLRGIGFRLVRVHLSGQNGLTLQIMAEREDGTMTVED 65 Query: 69 CEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 CEE+S+A+SP LDV++ IE Y LEVSSPGIDRP+VRKSDF+ W GH+V E + D+ Sbjct: 66 CEEVSRAVSPALDVDDPIEKAYHLEVSSPGIDRPLVRKSDFVTWTGHLVKMETSVIVADR 125 Query: 129 QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 ++ GKI E +E++K + E + + +D++ RLI+TD+L+R +L+ Sbjct: 126 KRFKGKIAEAGENDVLIERDKAAYGE--EPTVRVPYDAIAETRLILTDDLIRDALSK 180 >gi|319408014|emb|CBI81668.1| conserved hypothetical protein [Bartonella schoenbuchensis R1] Length = 211 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 72/183 (39%), Positives = 116/183 (63%), Gaps = 2/183 (1%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 + T +++ EPR+F + G+ G +++++ P+++ +S+R +++ L LQI ER Sbjct: 4 INETETINNIDEPRLFKEDGIEGRVAALVSPLLKPLSYRLIRVKFSGLNGLTLQIMAERT 63 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 DG MT+ DCE +S+ +SP LDV+NIIE Y LE+SSPGIDRP+VRKSDF +W GHV E Sbjct: 64 DGTMTIEDCEIISRTVSPFLDVQNIIERKYHLEISSPGIDRPLVRKSDFFKWQGHVAKIE 123 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 + +QK G + ++ F L +K ++ + + I F + +ARL++TDEL+R Sbjct: 124 TGVVINGRQKFRGTLTNITQNSFTLNTDKASHGEIAD--VLIPFADVTNARLVLTDELIR 181 Query: 181 ASL 183 +L Sbjct: 182 DAL 184 >gi|319779772|ref|YP_004139248.1| hypothetical protein Mesci_0023 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317165660|gb|ADV09198.1| protein of unknown function DUF150 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 214 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 77/179 (43%), Positives = 115/179 (64%), Gaps = 6/179 (3%) Query: 9 SKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRD 68 S+ + RI + G+ I+ ++QPV+ + FR V++ L + L LQI ER+DG MT+ D Sbjct: 6 SEGDDRIIRESGIDARIALIVQPVLRGIGFRLVRVHLSGQNGLTLQIMAEREDGTMTVED 65 Query: 69 CEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 CEE+S+A+SP LDV++ IE Y LEVSSPGIDRP+VRKSDF W GH+V E + D+ Sbjct: 66 CEEVSRAVSPALDVDDPIEKAYHLEVSSPGIDRPLVRKSDFTTWTGHLVKMETSIVVADR 125 Query: 129 QKLIGKIMGTSETGFFLEKEKR--GEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 ++ GKI E +E++K GE E + + +D++ RLI+TD+L+R +L+ Sbjct: 126 KRFKGKIAEAGEDDVLIERDKAAYGE----EPTVRVPYDAIADVRLILTDDLIRDALSK 180 >gi|15887444|ref|NP_353125.1| hypothetical protein Atu0090 [Agrobacterium tumefaciens str. C58] gi|34222929|sp|Q8UJ48|RIMP_AGRT5 RecName: Full=Ribosome maturation factor rimP gi|15154957|gb|AAK85910.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 198 Score = 151 bits (381), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 74/177 (41%), Positives = 115/177 (64%), Gaps = 6/177 (3%) Query: 9 SKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRD 68 + EPR+ + G+ I+ +I+PV+ M + V++ L + + LQ+ ER+DG M ++D Sbjct: 4 TAQEPRLITETGIDQRIAEIIEPVLTGMGYLLVRVRLSNQNGMTLQVMAEREDGTMNVQD 63 Query: 69 CEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 CE +S AISP+LDVE+ +E Y LEVSSPGIDRPMVRK+DF RW GH+V E + ++ Sbjct: 64 CEAISMAISPVLDVEDPVEKAYHLEVSSPGIDRPMVRKTDFTRWQGHLVKVETSILVENR 123 Query: 129 QKLIGKIMGTSETGFFLEKEK--RGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 ++ GKI+ F LE+++ GE E + + F++L A+LI+TD+L+R +L Sbjct: 124 KRFRGKIVEVDADSFKLERDQIAYGE----EPTVVVPFNALSDAKLILTDDLIRDAL 176 >gi|121601902|ref|YP_989500.1| hypothetical protein BARBAKC583_1251 [Bartonella bacilliformis KC583] gi|259585726|sp|A1UU47|RIMP_BARBK RecName: Full=Ribosome maturation factor rimP gi|120614079|gb|ABM44680.1| conserved hypothetical protein [Bartonella bacilliformis KC583] Length = 209 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 69/183 (37%), Positives = 113/183 (61%), Gaps = 4/183 (2%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 + +T + EPR+F + G+ + +++ P+++ + +R V++ LL L LQI ER Sbjct: 4 INATEIMDDIDEPRLFEEDGVEALVVALVAPLLKPLGYRLVRVKLLGLNGLTLQIMAERA 63 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 DG MT+ DCE +S+ ISP+LDV+N+IE Y LE+SSPGIDRP+VRKSDF W G+ E Sbjct: 64 DGTMTIEDCEIISKTISPLLDVQNVIERKYHLEISSPGIDRPLVRKSDFFHWQGYTAKIE 123 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 ++K G + ++ GF L + E++ + +SF ++ +A L++TD+L+R Sbjct: 124 TRTIVNGRRKFRGALENVTQDGFILNIDAAPEEET----VYVSFSNITNAHLVLTDKLIR 179 Query: 181 ASL 183 +L Sbjct: 180 DAL 182 >gi|118590497|ref|ZP_01547899.1| hypothetical protein SIAM614_02941 [Stappia aggregata IAM 12614] gi|118436960|gb|EAV43599.1| hypothetical protein SIAM614_02941 [Stappia aggregata IAM 12614] Length = 197 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 71/179 (39%), Positives = 113/179 (63%), Gaps = 8/179 (4%) Query: 9 SKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRD 68 S +EPRI + GL ++++++PVIE++ +R V+ + + LQI ER DG MT+ D Sbjct: 2 SAHEPRIVTEQGLDARVAAIVEPVIEDLGYRLVRTKISAQNGCTLQIMAERPDGTMTVED 61 Query: 69 CEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 CE +S+A+SP LDVE+ I Y LEVSSPGIDRP+VR DF RW GH + E+ + + Sbjct: 62 CETVSRAVSPALDVEDPINRAYHLEVSSPGIDRPLVRAGDFNRWAGHELKVEMAVMLDGR 121 Query: 129 QKLIGKIMGTSETGFF---LEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLN 184 ++ G ++G +E G L + GE+D +A+ +++ A+L++TD+L+ A+L Sbjct: 122 KRFRGTLLG-AENGMASIRLPDVREGEEDT----VALPLENIGEAKLVLTDDLITAALQ 175 >gi|92115661|ref|YP_575390.1| hypothetical protein Nham_0028 [Nitrobacter hamburgensis X14] gi|122418985|sp|Q1QS67|RIMP_NITHX RecName: Full=Ribosome maturation factor rimP gi|91798555|gb|ABE60930.1| protein of unknown function DUF150 [Nitrobacter hamburgensis X14] Length = 263 Score = 140 bits (353), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 67/174 (38%), Positives = 113/174 (64%), Gaps = 2/174 (1%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 EPR+ + G+A +SSV+ PV++ M +R V+I + E +QI ER DG+M + DCE Sbjct: 16 EPRLVVEPGVAARVSSVVAPVLQGMGYRLVRIKVSGEYGCTVQIMAERPDGSMQIEDCEA 75 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+A+SP+LDV + I+ YRLE+SSPGIDRP+VR+SDF R GH+V E+ ++ +++ Sbjct: 76 ISKALSPVLDVADPIDKAYRLEISSPGIDRPLVRRSDFERHAGHLVKVEMAVAHQGRKRF 135 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 G + G + L ++ ++++E ++ + + + ARL++TDEL+ S+ Sbjct: 136 RGILQGVKDNAIRLHRD--DVQNVDESEVLLVMEDIADARLVLTDELIAESMRR 187 >gi|328545920|ref|YP_004306029.1| ribosome maturation factor rimP [polymorphum gilvum SL003B-26A1] gi|326415660|gb|ADZ72723.1| Ribosome maturation factor rimP [Polymorphum gilvum SL003B-26A1] Length = 205 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 67/176 (38%), Positives = 111/176 (63%), Gaps = 2/176 (1%) Query: 9 SKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRD 68 S +E RI + GL ++++++PVIE++ +R V++ + LQI ER DG MT+ D Sbjct: 2 SLHEARIVIEQGLEARVAAIVEPVIEDLGYRLVRVKISAANGCTLQIMAERPDGTMTVED 61 Query: 69 CEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 CEE+S+A+SP LDV++ I Y LE+SSPGIDRP+VR DF RW+GHV E+ + + Sbjct: 62 CEEVSRAVSPALDVDDPINRAYHLEISSPGIDRPLVRVGDFDRWSGHVAKVEMSVMQDGR 121 Query: 129 QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLN 184 ++ G ++G + L + +E+++ ++ + ARL++TD+L+RA+L Sbjct: 122 KRFRGILLGAGDGTVRLRLTDTPKDVADEVRLPLA--EIAEARLVLTDDLIRAALQ 175 >gi|307942743|ref|ZP_07658088.1| conserved hypothetical protein [Roseibium sp. TrichSKD4] gi|307773539|gb|EFO32755.1| conserved hypothetical protein [Roseibium sp. TrichSKD4] Length = 200 Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 72/173 (41%), Positives = 108/173 (62%), Gaps = 6/173 (3%) Query: 9 SKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRD 68 S++E RI + GL ++++++PVIE++ FR V+ + LQI ER DG MT+ D Sbjct: 2 SEHEARIVTEQGLDARVAAIVEPVIEDLGFRLVRSKISAANGCTLQIMAERPDGTMTVED 61 Query: 69 CEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 CE +S+A+SP LDV++ I Y LEVSSPGIDRP+VR+SDF+RW+GH V E+ + + Sbjct: 62 CETVSRAVSPALDVDDPISRAYHLEVSSPGIDRPLVRESDFVRWSGHEVKIEMSVLQEGR 121 Query: 129 QKLIGKIMGT--SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELL 179 ++ G ++G ET L K GE D L I + A+L++TD+L+ Sbjct: 122 KRFRGTLLGAENGETQIKLPDTKSGEVDAVSLPIG----DIGEAKLVLTDDLI 170 >gi|27375897|ref|NP_767426.1| hypothetical protein bll0786 [Bradyrhizobium japonicum USDA 110] gi|34222841|sp|Q89WA6|RIMP_BRAJA RecName: Full=Ribosome maturation factor rimP gi|27349035|dbj|BAC46051.1| bll0786 [Bradyrhizobium japonicum USDA 110] Length = 251 Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 70/181 (38%), Positives = 113/181 (62%), Gaps = 6/181 (3%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 EPR+ + G+A +S+V PV++ M +R V+I + E +QI ER DG+M + DCE Sbjct: 16 EPRLVVEPGVAARVSAVAGPVLQGMGYRLVRIRISGEAGCTVQIMAERPDGSMQIEDCEA 75 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+A+SP+LDV + I+ YRLE+SSPGIDRP+VR+SDF R+ GH+V E+ ++ +++ Sbjct: 76 ISRALSPVLDVADPIDRAYRLEISSPGIDRPLVRRSDFERYAGHLVKVEMAVAHEGRKRF 135 Query: 132 IGKIMGTSETGFFLEKE--KRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSY 189 G I L+++ K GE E + ++ + + ARL++TDEL+ S+ + Sbjct: 136 RGMIGAVEGDRVHLQRDDVKAGE----ERNVLLTMEDISEARLVLTDELIAESMRRGKAA 191 Query: 190 A 190 A Sbjct: 192 A 192 >gi|86747723|ref|YP_484219.1| hypothetical protein RPB_0597 [Rhodopseudomonas palustris HaA2] gi|123408929|sp|Q2J2K2|RIMP_RHOP2 RecName: Full=Ribosome maturation factor rimP gi|86570751|gb|ABD05308.1| Protein of unknown function DUF150 [Rhodopseudomonas palustris HaA2] Length = 259 Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 69/174 (39%), Positives = 108/174 (62%), Gaps = 3/174 (1%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 EPR+ + G+A +V +PV+ M +R V+I + E +QI ER DG M + DCE Sbjct: 16 EPRLVVEPGVAARFGAVAEPVLLAMGYRLVRIKVSAEAGCTVQIMAERPDGTMLIEDCEA 75 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+A+SP+LDV + IE YRLE+SSPGIDRP+VR+SDF R++GH+V E+ + +++ Sbjct: 76 VSKALSPVLDVTDPIEKAYRLEISSPGIDRPLVRRSDFARYSGHLVKIEMAVPHQGRKRY 135 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 G + G +++E G KD + L + + + ARL++TDEL+ S+ Sbjct: 136 RGLLDGVEGDAIRIQRE--GVKDEDPL-VLLPMHDIGDARLVLTDELIAESMRR 186 >gi|153008086|ref|YP_001369301.1| hypothetical protein Oant_0750 [Ochrobactrum anthropi ATCC 49188] gi|167016790|sp|A6WWW8|RIMP_OCHA4 RecName: Full=Ribosome maturation factor rimP gi|151559974|gb|ABS13472.1| protein of unknown function DUF150 [Ochrobactrum anthropi ATCC 49188] Length = 224 Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 70/179 (39%), Positives = 107/179 (59%), Gaps = 2/179 (1%) Query: 7 LHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTL 66 L + + RI + G+ ++S+I+PVI + FR V++ L LQI ER DG MT+ Sbjct: 13 LAAGADERIIRETGIDAKVASIIEPVINTLGFRLVRVRLSGLNGQTLQIMAERPDGTMTV 72 Query: 67 RDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 DCE +S+ ++P+LDVE+ I G Y LE+SSPGIDRP+VRKSDF W GH+ E + Sbjct: 73 DDCELVSRTVAPVLDVEDPISGKYHLEISSPGIDRPLVRKSDFADWAGHIAKVETSVVHE 132 Query: 127 DKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 ++K G+I+ +E ++ +E + I FD + ARL++TD+L+R +L Sbjct: 133 GRKKFRGRIVLGDAESVVIESDQISYG--SEPVVRIPFDLISDARLVLTDDLIRDALRK 189 >gi|110636251|ref|YP_676459.1| hypothetical protein Meso_3927 [Mesorhizobium sp. BNC1] gi|123352956|sp|Q11BD1|RIMP_MESSB RecName: Full=Ribosome maturation factor rimP gi|110287235|gb|ABG65294.1| protein of unknown function DUF150 [Chelativorans sp. BNC1] Length = 220 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 68/174 (39%), Positives = 109/174 (62%), Gaps = 6/174 (3%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELS 73 RI + G A +++++ PV++ + +R V++ L + L LQI ER DG MT+ DCEE+S Sbjct: 5 RIIRETGAAARVAAIVMPVLDALGYRLVRVRLSAQDGLTLQIMAERPDGTMTVDDCEEVS 64 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 +A+SP LDVE+ I+ Y+LE+SSPGIDRP+VR SDF GH+ E + +++ G Sbjct: 65 RAVSPALDVEDPIDSAYQLEISSPGIDRPLVRLSDFQAALGHLAKVETSVMVDGRKRFRG 124 Query: 134 KIMGTSETGFFLEKEK--RGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 +I+G + +E++K GE + E I D++ A+L++TD L+R +L Sbjct: 125 QIVGCTGETLTIERDKVAEGEAPLAE----IPLDAISDAKLVLTDALIREALKK 174 >gi|90420534|ref|ZP_01228441.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1] gi|90335262|gb|EAS49015.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1] Length = 232 Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 65/166 (39%), Positives = 106/166 (63%), Gaps = 2/166 (1%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELS 73 RI + GL G ++ +++P IE++ +R V++ + LQI ER DG MT+ DCE +S Sbjct: 37 RIVKEQGLEGRVAEIVEPAIEQIGYRLVRVRTSGLNGMTLQIMAERPDGTMTVEDCEAVS 96 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 +A+SP+LDV++ I+ Y LEVSSPGIDRP+VRK DF W G ++ E ++++ G Sbjct: 97 RAVSPVLDVDDPIDKAYHLEVSSPGIDRPLVRKGDFETWAGFLMKLETNRLINERKRYRG 156 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELL 179 KI+ + +E+++ E + ++ I FD++ ARLI+TD+L+ Sbjct: 157 KIVAVGDEAITVERDQPAEGEPGAVE--IPFDAIGEARLILTDDLI 200 >gi|254502830|ref|ZP_05114981.1| conserved hypothetical protein [Labrenzia alexandrii DFL-11] gi|222438901|gb|EEE45580.1| conserved hypothetical protein [Labrenzia alexandrii DFL-11] Length = 198 Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 69/178 (38%), Positives = 104/178 (58%), Gaps = 6/178 (3%) Query: 9 SKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRD 68 S EPRI + GL ++++I+PVIE++ +R V+ + LQI ER DG MT+ D Sbjct: 2 SDQEPRIVTEQGLDARVAAIIEPVIEDLGYRLVRTRISAANGCTLQIMAERPDGTMTVDD 61 Query: 69 CEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 CE +S+A+SP LDVE+ I Y LEVSSPGIDRP+VR DF RW GH + E+ + + Sbjct: 62 CETISRAVSPALDVEDPINRAYHLEVSSPGIDRPLVRAGDFDRWAGHEMKVEMDVMQDGR 121 Query: 129 QKLIGKIMGTS--ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLN 184 ++ G ++G L GE D + + + + A+L++TD+L+ A+L Sbjct: 122 KRFRGTLLGVEGVSAKMRLPDAPEGEADT----VLLPMEDIGEAKLVLTDDLITAALQ 175 >gi|256060122|ref|ZP_05450304.1| hypothetical protein Bneo5_07156 [Brucella neotomae 5K33] gi|261324099|ref|ZP_05963296.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261300079|gb|EEY03576.1| conserved hypothetical protein [Brucella neotomae 5K33] Length = 219 Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 68/172 (39%), Positives = 103/172 (59%), Gaps = 2/172 (1%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELS 73 RI + G+ ++ +++PVI + FR V++ L LQI ER DG MT+ DCE +S Sbjct: 20 RIIRETGIDAKVAGIVEPVINTLGFRLVRVRLSGLNGQTLQIMAERPDGTMTVDDCELVS 79 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 + ++P+LDVE+ I G Y LE+SSPGIDRP+VRKSDF W GH+ E + ++K G Sbjct: 80 RTVAPVLDVEDPISGKYHLEISSPGIDRPLVRKSDFSDWAGHITKVETSIVHEGRKKFRG 139 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 +I+ +E ++ NE + I FD + ARL++TD+L+R +L Sbjct: 140 RIVVGEADSVTIESDQISYG--NEPVVRIPFDLISDARLVLTDDLIRDALRK 189 >gi|254718199|ref|ZP_05180010.1| hypothetical protein Bru83_01396 [Brucella sp. 83/13] gi|265983157|ref|ZP_06095892.1| conserved hypothetical protein [Brucella sp. 83/13] gi|306837713|ref|ZP_07470582.1| Protein of unknown function DUF150 [Brucella sp. NF 2653] gi|306843579|ref|ZP_07476180.1| Protein of unknown function DUF150 [Brucella sp. BO1] gi|264661749|gb|EEZ32010.1| conserved hypothetical protein [Brucella sp. 83/13] gi|306276270|gb|EFM57970.1| Protein of unknown function DUF150 [Brucella sp. BO1] gi|306407271|gb|EFM63481.1| Protein of unknown function DUF150 [Brucella sp. NF 2653] Length = 219 Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 68/172 (39%), Positives = 103/172 (59%), Gaps = 2/172 (1%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELS 73 RI + G+ ++ +++PVI + FR V++ L LQI ER DG MT+ DCE +S Sbjct: 20 RIIRETGIDAKVAGIVEPVINTLGFRLVRVRLSGLNGQTLQIMAERPDGTMTVDDCELVS 79 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 + ++P+LDVE+ I G Y LE+SSPGIDRP+VRKSDF W GH+ E + ++K G Sbjct: 80 RTVAPVLDVEDPISGKYHLEISSPGIDRPLVRKSDFSDWAGHIAKVETSIVHEGRKKFRG 139 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 +I+ +E ++ NE + I FD + ARL++TD+L+R +L Sbjct: 140 RIVVGDADSVTIESDQISYG--NEPVVRIPFDLISDARLVLTDDLIRDALRK 189 >gi|62290999|ref|YP_222792.1| hypothetical protein BruAb1_2135 [Brucella abortus bv. 1 str. 9-941] gi|82700908|ref|YP_415482.1| hypothetical protein BAB1_2162 [Brucella melitensis biovar Abortus 2308] gi|189025211|ref|YP_001935979.1| hypothetical protein BAbS19_I20230 [Brucella abortus S19] gi|237816501|ref|ZP_04595494.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A] gi|254696409|ref|ZP_05158237.1| hypothetical protein Babob28_01503 [Brucella abortus bv. 2 str. 86/8/59] gi|254731322|ref|ZP_05189900.1| hypothetical protein Babob42_09020 [Brucella abortus bv. 4 str. 292] gi|260546262|ref|ZP_05822002.1| conserved hypothetical protein [Brucella abortus NCTC 8038] gi|260759056|ref|ZP_05871404.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|260760781|ref|ZP_05873124.1| conserved hypothetical protein [Brucella abortus bv. 2 str. 86/8/59] gi|75496020|sp|Q57AA3|RIMP_BRUAB RecName: Full=Ribosome maturation factor rimP gi|91208402|sp|Q2YQS0|RIMP_BRUA2 RecName: Full=Ribosome maturation factor rimP gi|259585733|sp|B2S9F3|RIMP_BRUA1 RecName: Full=Ribosome maturation factor rimP gi|62197131|gb|AAX75431.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941] gi|82617009|emb|CAJ12118.1| Domain of unknown function DUF150 [Brucella melitensis biovar Abortus 2308] gi|189020783|gb|ACD73505.1| Domain of unknown function DUF150 [Brucella abortus S19] gi|237788568|gb|EEP62783.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A] gi|260096369|gb|EEW80245.1| conserved hypothetical protein [Brucella abortus NCTC 8038] gi|260669374|gb|EEX56314.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|260671213|gb|EEX58034.1| conserved hypothetical protein [Brucella abortus bv. 2 str. 86/8/59] Length = 219 Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 68/172 (39%), Positives = 103/172 (59%), Gaps = 2/172 (1%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELS 73 RI + G+ ++ +++PVI + FR V++ L LQI ER DG MT+ DCE +S Sbjct: 20 RIIRETGIDAKVAGIVEPVINTLGFRLVRVRLSGLNGQTLQIMAERPDGTMTVDDCELVS 79 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 + ++P+LDVE+ I G Y LE+SSPGIDRP+VRKSDF W GH+ E + ++K G Sbjct: 80 RTVAPVLDVEDPISGKYHLEISSPGIDRPLVRKSDFSDWAGHIAKVETSIVHEGRKKFRG 139 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 +I+ +E ++ NE + I FD + ARL++TD+L+R +L Sbjct: 140 RIVVGEADSVTIESDQISYG--NEPVVRIPFDLISDARLVLTDDLIRDALRK 189 >gi|17988251|ref|NP_540885.1| hypothetical protein BMEI1968 [Brucella melitensis bv. 1 str. 16M] gi|23503010|ref|NP_699137.1| hypothetical protein BR2162 [Brucella suis 1330] gi|148560565|ref|YP_001259956.1| hypothetical protein BOV_2074 [Brucella ovis ATCC 25840] gi|161620070|ref|YP_001593957.1| hypothetical protein BCAN_A2204 [Brucella canis ATCC 23365] gi|163844175|ref|YP_001628580.1| hypothetical protein BSUIS_A1999 [Brucella suis ATCC 23445] gi|225853587|ref|YP_002733820.1| hypothetical protein BMEA_A2222 [Brucella melitensis ATCC 23457] gi|254690293|ref|ZP_05153547.1| hypothetical protein Babob68_08992 [Brucella abortus bv. 6 str. 870] gi|254694781|ref|ZP_05156609.1| hypothetical protein Babob3T_08988 [Brucella abortus bv. 3 str. Tulya] gi|254700791|ref|ZP_05162619.1| hypothetical protein Bsuib55_08022 [Brucella suis bv. 5 str. 513] gi|254705160|ref|ZP_05166988.1| hypothetical protein Bsuib36_14811 [Brucella suis bv. 3 str. 686] gi|254709136|ref|ZP_05170947.1| hypothetical protein BpinB_02482 [Brucella pinnipedialis B2/94] gi|254713439|ref|ZP_05175250.1| hypothetical protein BcetM6_08809 [Brucella ceti M644/93/1] gi|254716205|ref|ZP_05178016.1| hypothetical protein BcetM_07186 [Brucella ceti M13/05/1] gi|256030661|ref|ZP_05444275.1| hypothetical protein BpinM2_08407 [Brucella pinnipedialis M292/94/1] gi|256045765|ref|ZP_05448643.1| hypothetical protein Bmelb1R_14765 [Brucella melitensis bv. 1 str. Rev.1] gi|256112484|ref|ZP_05453405.1| hypothetical protein Bmelb3E_07358 [Brucella melitensis bv. 3 str. Ether] gi|256158663|ref|ZP_05456546.1| hypothetical protein BcetM4_07321 [Brucella ceti M490/95/1] gi|256254067|ref|ZP_05459603.1| hypothetical protein BcetB_07163 [Brucella ceti B1/94] gi|256258546|ref|ZP_05464082.1| hypothetical protein Babob9C_14597 [Brucella abortus bv. 9 str. C68] gi|256262929|ref|ZP_05465461.1| conserved hypothetical protein [Brucella melitensis bv. 2 str. 63/9] gi|256370557|ref|YP_003108068.1| hypothetical protein BMI_I2183 [Brucella microti CCM 4915] gi|260563061|ref|ZP_05833547.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|260567371|ref|ZP_05837841.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] gi|260755833|ref|ZP_05868181.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870] gi|260884858|ref|ZP_05896472.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|261215108|ref|ZP_05929389.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya] gi|261217979|ref|ZP_05932260.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261221208|ref|ZP_05935489.1| conserved hypothetical protein [Brucella ceti B1/94] gi|261316636|ref|ZP_05955833.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261321171|ref|ZP_05960368.1| hypothetical protein BAIG_01745 [Brucella ceti M644/93/1] gi|261751300|ref|ZP_05995009.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261755865|ref|ZP_05999574.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|265987708|ref|ZP_06100265.1| hypothetical protein BALG_00285 [Brucella pinnipedialis M292/94/1] gi|265992182|ref|ZP_06104739.1| hypothetical protein BAMG_02674 [Brucella melitensis bv. 1 str. Rev.1] gi|265993920|ref|ZP_06106477.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|265997169|ref|ZP_06109726.1| hypothetical protein BAPG_00290 [Brucella ceti M490/95/1] gi|294851386|ref|ZP_06792059.1| hypothetical protein BAZG_00287 [Brucella sp. NVSL 07-0026] gi|297247385|ref|ZP_06931103.1| hypothetical protein BAYG_00286 [Brucella abortus bv. 5 str. B3196] gi|54040492|sp|P67213|RIMP_BRUSU RecName: Full=Ribosome maturation factor rimP gi|54042664|sp|P67212|RIMP_BRUME RecName: Full=Ribosome maturation factor rimP gi|166980272|sp|A5VTA9|RIMP_BRUO2 RecName: Full=Ribosome maturation factor rimP gi|189039426|sp|B0CK08|RIMP_BRUSI RecName: Full=Ribosome maturation factor rimP gi|189039778|sp|A9M9Z1|RIMP_BRUC2 RecName: Full=Ribosome maturation factor rimP gi|254801690|sp|C0RG44|RIMP_BRUMB RecName: Full=Ribosome maturation factor rimP gi|17984019|gb|AAL53149.1| protein associated with nus operon [Brucella melitensis bv. 1 str. 16M] gi|23349050|gb|AAN31052.1| conserved hypothetical protein [Brucella suis 1330] gi|148371822|gb|ABQ61801.1| conserved hypothetical protein [Brucella ovis ATCC 25840] gi|161336881|gb|ABX63186.1| hypothetical protein BCAN_A2204 [Brucella canis ATCC 23365] gi|163674898|gb|ABY39009.1| Hypothetical protein BSUIS_A1999 [Brucella suis ATCC 23445] gi|225641952|gb|ACO01866.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457] gi|256000720|gb|ACU49119.1| hypothetical protein BMI_I2183 [Brucella microti CCM 4915] gi|260153077|gb|EEW88169.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|260156889|gb|EEW91969.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] gi|260675941|gb|EEX62762.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870] gi|260874386|gb|EEX81455.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|260916715|gb|EEX83576.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya] gi|260919792|gb|EEX86445.1| conserved hypothetical protein [Brucella ceti B1/94] gi|260923068|gb|EEX89636.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261293861|gb|EEX97357.1| hypothetical protein BAIG_01745 [Brucella ceti M644/93/1] gi|261295859|gb|EEX99355.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261741053|gb|EEY28979.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261745618|gb|EEY33544.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|262551637|gb|EEZ07627.1| hypothetical protein BAPG_00290 [Brucella ceti M490/95/1] gi|262764901|gb|EEZ10822.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|263003248|gb|EEZ15541.1| hypothetical protein BAMG_02674 [Brucella melitensis bv. 1 str. Rev.1] gi|263092803|gb|EEZ16978.1| conserved hypothetical protein [Brucella melitensis bv. 2 str. 63/9] gi|264659905|gb|EEZ30166.1| hypothetical protein BALG_00285 [Brucella pinnipedialis M292/94/1] gi|294819975|gb|EFG36974.1| hypothetical protein BAZG_00287 [Brucella sp. NVSL 07-0026] gi|297174554|gb|EFH33901.1| hypothetical protein BAYG_00286 [Brucella abortus bv. 5 str. B3196] gi|326410160|gb|ADZ67225.1| conserved hypothetical protein [Brucella melitensis M28] gi|326539878|gb|ADZ88093.1| conserved hypothetical protein [Brucella melitensis M5-90] Length = 219 Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 68/172 (39%), Positives = 103/172 (59%), Gaps = 2/172 (1%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELS 73 RI + G+ ++ +++PVI + FR V++ L LQI ER DG MT+ DCE +S Sbjct: 20 RIIRETGIDAKVAGIVEPVINTLGFRLVRVRLSGLNGQTLQIMAERPDGTMTVDDCELVS 79 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 + ++P+LDVE+ I G Y LE+SSPGIDRP+VRKSDF W GH+ E + ++K G Sbjct: 80 RTVAPVLDVEDPISGKYHLEISSPGIDRPLVRKSDFSDWAGHIAKVETSIVHEGRKKFRG 139 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 +I+ +E ++ NE + I FD + ARL++TD+L+R +L Sbjct: 140 RIVVGEADSVTIESDQISYG--NEPVVRIPFDLISDARLVLTDDLIRDALRK 189 >gi|259585702|sp|A8IG16|RIMP_AZOC5 RecName: Full=Ribosome maturation factor rimP Length = 291 Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 66/174 (37%), Positives = 109/174 (62%), Gaps = 6/174 (3%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 EPR+ + G+A I++++ PV+ +++ R V++ + QI ER DG+MT+ DCE Sbjct: 12 EPRLITESGVAARIAAIVTPVLADLNLRLVRVKVTARDGGTCQIMAERPDGSMTIDDCEA 71 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 S+AISP+LDVE+ I G YRLE+SSPGIDRP+VR +DF RW GH V E+ + +++ Sbjct: 72 ASRAISPVLDVEDPITGAYRLEISSPGIDRPLVRLTDFDRWAGHEVKVEMAVPVDGRKRF 131 Query: 132 IGKIMGTSETGFFLEK--EKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 G ++GT +++ +GE E ++++ + A+L++TD L+ +L Sbjct: 132 RGILIGTRAELAVVKRTDAPKGE----EPEVSLPVADIGEAKLVLTDALITEAL 181 >gi|158421641|ref|YP_001522933.1| hypothetical protein AZC_0017 [Azorhizobium caulinodans ORS 571] gi|158328530|dbj|BAF86015.1| uncharacterized protein [Azorhizobium caulinodans ORS 571] Length = 329 Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 66/176 (37%), Positives = 109/176 (61%), Gaps = 6/176 (3%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 EPR+ + G+A I++++ PV+ +++ R V++ + QI ER DG+MT+ DCE Sbjct: 50 EPRLITESGVAARIAAIVTPVLADLNLRLVRVKVTARDGGTCQIMAERPDGSMTIDDCEA 109 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 S+AISP+LDVE+ I G YRLE+SSPGIDRP+VR +DF RW GH V E+ + +++ Sbjct: 110 ASRAISPVLDVEDPITGAYRLEISSPGIDRPLVRLTDFDRWAGHEVKVEMAVPVDGRKRF 169 Query: 132 IGKIMGTSETGFFLEK--EKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 G ++GT +++ +GE E ++++ + A+L++TD L+ +L Sbjct: 170 RGILIGTRAELAVVKRTDAPKGE----EPEVSLPVADIGEAKLVLTDALITEALRR 221 >gi|254471146|ref|ZP_05084549.1| conserved hypothetical protein [Pseudovibrio sp. JE062] gi|211960288|gb|EEA95485.1| conserved hypothetical protein [Pseudovibrio sp. JE062] Length = 196 Score = 134 bits (336), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 69/171 (40%), Positives = 101/171 (59%), Gaps = 8/171 (4%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 +PRI + GL ++ +++PVI ++ +R V+I + LQI ER DG M + DCEE Sbjct: 5 DPRIVKEKGLEARVAEIVEPVIVDLGYRLVRIRVNGNNGCTLQIMAERPDGTMAVEDCEE 64 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S A+SP LDV++ I G Y LE+SSPGIDRP+VR DF RW GHVV E+ + +++ Sbjct: 65 ISHAVSPALDVDDPISGAYHLEISSPGIDRPLVRAGDFERWVGHVVKIEMSVPQAGRKRY 124 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQ---IAISFDSLLSARLIVTDELL 179 G I+G E + D+ E Q + D + SA L++TDEL+ Sbjct: 125 RGHIIGVEEGNAVIRM-----TDVQEGQDEAAHLPLDEIGSAVLVLTDELI 170 >gi|225626527|ref|ZP_03784566.1| Protein of unknown function DUF150 [Brucella ceti str. Cudo] gi|260169565|ref|ZP_05756376.1| hypothetical protein BruF5_14639 [Brucella sp. F5/99] gi|261759093|ref|ZP_06002802.1| conserved hypothetical protein [Brucella sp. F5/99] gi|225618184|gb|EEH15227.1| Protein of unknown function DUF150 [Brucella ceti str. Cudo] gi|261739077|gb|EEY27073.1| conserved hypothetical protein [Brucella sp. F5/99] Length = 219 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 67/172 (38%), Positives = 102/172 (59%), Gaps = 2/172 (1%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELS 73 RI + G+ ++ +++PVI + FR V++ L LQI ER DG MT+ DCE +S Sbjct: 20 RIIRETGIDAKVAGIVEPVINTLGFRLVRVRLSGLNGQTLQIMAERPDGTMTVDDCELVS 79 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 + ++P+LDVE+ I G Y LE+SSPGIDRP+VRKSDF W GH+ E + ++K G Sbjct: 80 RTVAPVLDVEDPISGKYHLEISSPGIDRPLVRKSDFSDWAGHIAKVETSIVHEGRKKFRG 139 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 +I+ +E ++ NE + I FD + ARL++TD+ +R +L Sbjct: 140 RIVVGEADSVTIESDQISYG--NEPVVRIPFDLISDARLVLTDDFIRDALRK 189 >gi|85714178|ref|ZP_01045167.1| hypothetical protein NB311A_08478 [Nitrobacter sp. Nb-311A] gi|85699304|gb|EAQ37172.1| hypothetical protein NB311A_08478 [Nitrobacter sp. Nb-311A] Length = 259 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 63/172 (36%), Positives = 108/172 (62%), Gaps = 2/172 (1%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 EPR+ + G+A ++++ PV++ M +R V+I + E LQI ER DG+M + DCE Sbjct: 16 EPRLVLEPGVAARVATIAAPVLQGMGYRLVRIKVSGEAGCTLQIMAERPDGSMQIEDCET 75 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+ +SP+LDV + I+ YRLE+SSPGIDRP+VR+SDF R+ GH+ E+ ++ +++ Sbjct: 76 ISKMLSPVLDVADPIDRAYRLEISSPGIDRPLVRRSDFERYAGHLAKVEMAVAHQGRKRF 135 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 G + G + L ++ + N+ + + + + ARL++TDEL+ S+ Sbjct: 136 RGILRGVEDNAVRLHRDDVQQD--NDADVLLIMEDIADARLVLTDELIAESM 185 >gi|259586221|sp|Q21C34|RIMP_RHOPB RecName: Full=Ribosome maturation factor rimP Length = 262 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 65/174 (37%), Positives = 106/174 (60%), Gaps = 2/174 (1%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 EPR+ + GL +++V PV++ M +R V+I + E +QI ER DG M + DCE Sbjct: 16 EPRLVVEPGLGARVAAVAGPVLQGMGYRLVRIKVSGELGCTVQIMAERPDGTMLVEDCEA 75 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S A+SP+LD+ + +E YRLE+SSPGIDRP+VR+SDF R+ G++V E+ ++ G +++ Sbjct: 76 ISHALSPVLDIADPVERAYRLEISSPGIDRPLVRRSDFERYEGYLVKIEMAVAVGGRKRF 135 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 G + L +E G +D + + + + SA L++TDEL+ S+ Sbjct: 136 RGLLGPLQGDAVLLARE--GARDGEDPNSLLPLEDIASANLVLTDELIAESMRR 187 >gi|90422001|ref|YP_530371.1| hypothetical protein RPC_0477 [Rhodopseudomonas palustris BisB18] gi|90104015|gb|ABD86052.1| protein of unknown function DUF150 [Rhodopseudomonas palustris BisB18] Length = 272 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 65/174 (37%), Positives = 106/174 (60%), Gaps = 2/174 (1%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 EPR+ + GL +++V PV++ M +R V+I + E +QI ER DG M + DCE Sbjct: 26 EPRLVVEPGLGARVAAVAGPVLQGMGYRLVRIKVSGELGCTVQIMAERPDGTMLVEDCEA 85 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S A+SP+LD+ + +E YRLE+SSPGIDRP+VR+SDF R+ G++V E+ ++ G +++ Sbjct: 86 ISHALSPVLDIADPVERAYRLEISSPGIDRPLVRRSDFERYEGYLVKIEMAVAVGGRKRF 145 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 G + L +E G +D + + + + SA L++TDEL+ S+ Sbjct: 146 RGLLGPLQGDAVLLARE--GARDGEDPNSLLPLEDIASANLVLTDELIAESMRR 197 >gi|239833210|ref|ZP_04681539.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301] gi|239825477|gb|EEQ97045.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301] Length = 240 Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 66/172 (38%), Positives = 103/172 (59%), Gaps = 2/172 (1%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELS 73 RI + G+ ++ +++PV+ + FR V++ L LQI ER DG MT+ DCE +S Sbjct: 36 RIIRETGIDAKVAGIVEPVLNTLGFRLVRVRLSGLNGQTLQIMAERPDGTMTVDDCELVS 95 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 + ++P+LDVE+ I G Y LE+SSPGIDRP+VRKSDF W GH+ E + ++K G Sbjct: 96 RTVAPVLDVEDPINGKYHLEISSPGIDRPLVRKSDFADWAGHIAKVETSIVHEGRKKFRG 155 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 +I+ +E ++ +E + I FD + ARL++TD+L+R +L Sbjct: 156 RIVLGDAESVVIESDQISYG--SEPVVRIPFDLISDARLVLTDDLIRDALRK 205 >gi|91974716|ref|YP_567375.1| hypothetical protein RPD_0234 [Rhodopseudomonas palustris BisB5] gi|123749481|sp|Q13EL5|RIMP_RHOPS RecName: Full=Ribosome maturation factor rimP gi|91681172|gb|ABE37474.1| protein of unknown function DUF150 [Rhodopseudomonas palustris BisB5] Length = 262 Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 67/174 (38%), Positives = 108/174 (62%), Gaps = 2/174 (1%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 EPR+ + G+A ++V +PV++ M +R V+I + E +QI ER DG M + DCE Sbjct: 16 EPRLVVEPGVAARFAAVAEPVLQAMGYRLVRIKVSGEAGCTVQIMAERPDGTMLIDDCEA 75 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+A+SP+LDV + I+ YRLE+SSPGIDRP+VR SDF R++GH+V E+ + +++ Sbjct: 76 VSRALSPVLDVTDPIDRAYRLEISSPGIDRPLVRSSDFARYSGHLVKIEMAVPHQGRKRY 135 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 G + G +++E KD + L + + + ARL++TDEL+ S+ Sbjct: 136 RGLLDGVEGDAIRIQREG-VTKDEDPL-VLLPMHDIGDARLVLTDELVAESMRR 187 >gi|304392763|ref|ZP_07374703.1| conserved hypothetical protein [Ahrensia sp. R2A130] gi|303295393|gb|EFL89753.1| conserved hypothetical protein [Ahrensia sp. R2A130] Length = 213 Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 62/176 (35%), Positives = 107/176 (60%), Gaps = 2/176 (1%) Query: 8 HSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLR 67 + + + R+ + GL ++SVI PVIE++ +R V++ +++ L +QIF ER DG M++ Sbjct: 20 NDRADARLVKEEGLDAKVASVIAPVIEDLGYRLVRVRMVDHNGLTMQIFAERPDGTMSVG 79 Query: 68 DCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD 127 +CE +S+A+SP+LDVE+ + Y LEV SPGIDRP+VR+SDF W GH E Sbjct: 80 ECEIISKALSPVLDVEDPVTQAYNLEVGSPGIDRPLVRRSDFETWTGHTAKIETAYLVDG 139 Query: 128 KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 +++ GK++ L ++ + + + + ++ SA L++TD+L+R +L Sbjct: 140 RKRFRGKLVAVDGEIVKLRRDNAASGEDKDADVPLH--AIASASLVLTDDLIREAL 193 >gi|300024994|ref|YP_003757605.1| hypothetical protein Hden_3493 [Hyphomicrobium denitrificans ATCC 51888] gi|299526815|gb|ADJ25284.1| protein of unknown function DUF150 [Hyphomicrobium denitrificans ATCC 51888] Length = 213 Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 64/173 (36%), Positives = 110/173 (63%), Gaps = 6/173 (3%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLL---EEKNLLLQIFVERDDGNMTLRDCE 70 R + G+A +++++++PV+E++ FR V++ + + ++Q+ ER DG++T+ DCE Sbjct: 20 RFLRETGVAAEVAAIVEPVLEDLGFRLVRVKVQGGGATADKIVQLMAERPDGSITVDDCE 79 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 +S+ +SP+LDV + + G YRLEVSSPGIDRP+VR SDF W+GH E+ + G ++K Sbjct: 80 TISKQVSPVLDVADPVSGAYRLEVSSPGIDRPLVRPSDFEDWSGHEAKIELTEAVGGRRK 139 Query: 131 LIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 G + G + +E + GE + L + + + ARL++TDEL+R +L Sbjct: 140 FKGMLEGFEDGEVRIEADT-GEHGIQHLGLPVHL--ISDARLVLTDELIREAL 189 >gi|114705361|ref|ZP_01438269.1| hypothetical protein FP2506_10491 [Fulvimarina pelagi HTCC2506] gi|114540146|gb|EAU43266.1| hypothetical protein FP2506_10491 [Fulvimarina pelagi HTCC2506] Length = 202 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 65/176 (36%), Positives = 107/176 (60%), Gaps = 2/176 (1%) Query: 9 SKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRD 68 ++ E RI + GL I+S+++P IE+ +R V++ + +QI ER DG M + Sbjct: 2 TEKETRIVTEDGLEAKIASIVEPAIEQTGYRLVRVRVSGMNGKTVQIMAERPDGTMDVEG 61 Query: 69 CEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 CEE+S+AISP+L+ E+ ++G Y LE+SSPGIDRP+VR SDF W G ++ E D+ Sbjct: 62 CEEVSRAISPVLETEDPVDGAYHLELSSPGIDRPLVRVSDFETWAGFLMKLETSRLVADR 121 Query: 129 QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLN 184 ++ GKI+ +E+++ + ++ I D++ ARL++TD+L+ ASL Sbjct: 122 KRYRGKIVKVENGTITIERDQPAYGEPASVE--IPLDAVADARLVLTDDLIEASLK 175 >gi|316931576|ref|YP_004106558.1| hypothetical protein Rpdx1_0181 [Rhodopseudomonas palustris DX-1] gi|315599290|gb|ADU41825.1| protein of unknown function DUF150 [Rhodopseudomonas palustris DX-1] Length = 259 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 65/176 (36%), Positives = 109/176 (61%), Gaps = 6/176 (3%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 EPR+ + G+A +V +PV+ M +R V+I + E +QI ER DG M + DCE Sbjct: 16 EPRLVIEPGVAARFCAVAEPVLLAMGYRLVRIKVSGEAGCTVQIMAERPDGTMLIDDCEA 75 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+A+SP+LDV + I+ YRLE+SSPGIDRP+VR+SDF R+ GH+V E+ ++ +++ Sbjct: 76 VSRALSPVLDVADPIDRAYRLEISSPGIDRPLVRRSDFARYAGHLVKVEMAVAHQGRKRF 135 Query: 132 IGKIMGTSETGFFLEKEK--RGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 G + G +++++ +GE + + ++ + ARL++TDEL+ S+ Sbjct: 136 RGLLDGVEGDAVRIQRDEAPKGEDPL----VLLAMHDIGDARLVLTDELVAESMRR 187 >gi|39933516|ref|NP_945792.1| hypothetical protein RPA0439 [Rhodopseudomonas palustris CGA009] gi|51316646|sp|Q6NCN2|RIMP_RHOPA RecName: Full=Ribosome maturation factor rimP gi|39647362|emb|CAE25883.1| DUF150 [Rhodopseudomonas palustris CGA009] Length = 259 Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 66/174 (37%), Positives = 106/174 (60%), Gaps = 2/174 (1%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 EPR+ + G+A +V +PV+ M +R V+I + + +QI ER DG M + DCE Sbjct: 16 EPRLVIEPGVAARFCAVAEPVLMAMGYRLVRIKVSGDAGCTVQIMAERPDGTMLIDDCEA 75 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+A+SP+LDV + I+ YRLE+SSPGIDRP+VR+SDF R+ GH+V E+ + +++ Sbjct: 76 VSRALSPVLDVADPIDRAYRLEISSPGIDRPLVRRSDFARYAGHLVKIEMAVPHQGRKRY 135 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 G + G +++E KD + L + + + ARL++TDEL+ S+ Sbjct: 136 RGLLDGVEGDAVRVQREG-ATKDEDPL-VLLPMHDIGDARLVLTDELIAESMRR 187 >gi|209883665|ref|YP_002287522.1| hypothetical protein OCAR_4512 [Oligotropha carboxidovorans OM5] gi|226706198|sp|B6JCS7|RIMP_OLICO RecName: Full=Ribosome maturation factor rimP gi|209871861|gb|ACI91657.1| hypothetical protein OCAR_4512 [Oligotropha carboxidovorans OM5] Length = 260 Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 61/178 (34%), Positives = 106/178 (59%), Gaps = 1/178 (0%) Query: 9 SKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRD 68 S EPR+ + G+A ++++ +PV+E + +R V+I + E +QI ER DG M + D Sbjct: 13 STAEPRLVVEPGVAARVAAIAEPVLEGLGYRLVRIKISGEAGCTVQIMAERPDGTMLIDD 72 Query: 69 CEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 CE +S+A+SP++DV + I+ YRLE+SSPGIDRP+VR+SDF R+ GH+V E+ + Sbjct: 73 CEAVSKALSPVMDVADPIQRAYRLEISSPGIDRPLVRQSDFERYTGHLVKIEMAAPHEGR 132 Query: 129 QKLIGKIMGTSETGFFLEK-EKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 ++ G + G + + + + + + + + SA L++TD+L+ S+ Sbjct: 133 KRFRGTLQGIEDNLVRITRDDAKSHEGAQPADARLPLADIASAHLVLTDQLIAESMRR 190 >gi|192288874|ref|YP_001989479.1| hypothetical protein Rpal_0443 [Rhodopseudomonas palustris TIE-1] gi|226706186|sp|B3QAB7|RIMP_RHOPT RecName: Full=Ribosome maturation factor rimP gi|192282623|gb|ACE99003.1| protein of unknown function DUF150 [Rhodopseudomonas palustris TIE-1] Length = 259 Score = 128 bits (321), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 66/174 (37%), Positives = 105/174 (60%), Gaps = 2/174 (1%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 EPR+ + G+A +V +PV+ M +R V+I + + +QI ER DG M + DCE Sbjct: 16 EPRLVIEPGVAARFCAVAEPVLMAMGYRLVRIKVSGDAGCTVQIMAERPDGTMLIDDCEA 75 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 S+A+SP+LDV + I+ YRLE+SSPGIDRP+VR+SDF R+ GH+V E+ + +++ Sbjct: 76 ASRALSPVLDVADPIDRAYRLEISSPGIDRPLVRRSDFARYAGHLVKIEMAVPHQGRKRY 135 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 G + G +++E KD + L + + + ARL++TDEL+ S+ Sbjct: 136 RGLLDGVEGDAVRVQREG-ATKDEDPL-VLLPMHDIGDARLVLTDELIAESMRR 187 >gi|154244253|ref|YP_001415211.1| hypothetical protein Xaut_0296 [Xanthobacter autotrophicus Py2] gi|259645219|sp|A7IC11|RIMP_XANP2 RecName: Full=Ribosome maturation factor rimP gi|154158338|gb|ABS65554.1| protein of unknown function DUF150 [Xanthobacter autotrophicus Py2] Length = 286 Score = 127 bits (318), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 64/178 (35%), Positives = 105/178 (58%), Gaps = 2/178 (1%) Query: 6 FLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMT 65 L EPR+ + G+A ++++ V+ + +R V++ + LQI ER DG M+ Sbjct: 7 VLDDPNEPRLITETGVAARVAAIASGVLGALGYRLVRVKVTNRDGGTLQIMAERPDGTMS 66 Query: 66 LRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS 125 + DCE S+A+SP+LDVE+ I YRLE+SSPGIDRP+VR+SDF+RW GH V E+ Sbjct: 67 IDDCEAASRALSPVLDVEDPISSAYRLEMSSPGIDRPLVRQSDFVRWAGHEVKVEMARPV 126 Query: 126 GDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 +++ G ++G +E G + + + E + + + A+L++TD L+R +L Sbjct: 127 DGRKRFRGILIG-AEDGIAVVR-RLDAPATEEPTVRLPVADIHDAKLMLTDALIREAL 182 >gi|254707322|ref|ZP_05169150.1| hypothetical protein BpinM_10195 [Brucella pinnipedialis M163/99/10] gi|261314804|ref|ZP_05954001.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261303830|gb|EEY07327.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] Length = 192 Score = 127 bits (318), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 65/159 (40%), Positives = 97/159 (61%), Gaps = 2/159 (1%) Query: 27 SVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 ++++PVI + FR V++ L LQI ER DG MT+ DCE +S+ ++P+LDVE+ I Sbjct: 6 ALLEPVINTLGFRLVRVRLSGLNGQTLQIMAERPDGTMTVDDCELVSRTVAPVLDVEDPI 65 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE 146 G Y LE+SSPGIDRP+VRKSDF W GH+ E + ++K G+I+ +E Sbjct: 66 SGKYHLEISSPGIDRPLVRKSDFSDWAGHIAKVETSIVHEGRKKFRGRIVVGEADSVTIE 125 Query: 147 KEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 ++ NE + I FD + ARL++TD+L+R +L Sbjct: 126 SDQISYG--NEPVVRIPFDLISDARLVLTDDLIRDALRK 162 >gi|296448219|ref|ZP_06890115.1| protein of unknown function DUF150 [Methylosinus trichosporium OB3b] gi|296254259|gb|EFH01390.1| protein of unknown function DUF150 [Methylosinus trichosporium OB3b] Length = 251 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 68/176 (38%), Positives = 103/176 (58%), Gaps = 3/176 (1%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 EPR+ G+ G+A I+ + +PV+ ++ +R V+ +L + ++LQI ER DG MT+ DCE Sbjct: 16 EPRLCGETGVAARIAHIAEPVLAQLGYRLVRARILSQNGVILQIMAERPDGTMTIEDCEA 75 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS-SGDKQK 130 SQA+SP LDVE+ I YRLE+SSPGIDRP+VR SDF R G E+ L + +++ Sbjct: 76 ASQALSPELDVEDAIADAYRLELSSPGIDRPLVRVSDFRRAIGQEAKIELTLPLASGRKR 135 Query: 131 LIGKIMGTSETG--FFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLN 184 G I+ G E++ E + + L A+L++T+ L+R SL Sbjct: 136 FRGDIIAVEGEGREAVATLERKDAPPDEEKTVRLPLRDLDEAKLMLTEALIRESLR 191 >gi|217978444|ref|YP_002362591.1| protein of unknown function DUF150 [Methylocella silvestris BL2] gi|259585790|sp|B8EIB0|RIMP_METSB RecName: Full=Ribosome maturation factor rimP gi|217503820|gb|ACK51229.1| protein of unknown function DUF150 [Methylocella silvestris BL2] Length = 279 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 63/170 (37%), Positives = 101/170 (59%), Gaps = 2/170 (1%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 EPR+ + G+A I+ + PV+ ++ +R V++ L + + +QI ER DG MT+ DCE Sbjct: 17 EPRLVAETGVAARIAHIATPVLADLGYRLVRVKLSAQDGMTVQIMAERPDGAMTVNDCEA 76 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S A+SP LDVE++++ YRLE+SSPGIDRP+VR SDF R E+ L +++ Sbjct: 77 VSAALSPALDVEDVVKQAYRLEISSPGIDRPLVRVSDFRRALDQEARIELRLGLDGRKRF 136 Query: 132 IGKIMGTSETG--FFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELL 179 G I G + G + E+ K ++ + D L A+L++T+EL+ Sbjct: 137 RGLIKGVTGAGAAAVVTLERVDAKPGEAVEAVLPLDDLAEAKLVLTEELI 186 >gi|170740832|ref|YP_001769487.1| hypothetical protein M446_2614 [Methylobacterium sp. 4-46] gi|259585789|sp|B0UL53|RIMP_METS4 RecName: Full=Ribosome maturation factor rimP gi|168195106|gb|ACA17053.1| protein of unknown function DUF150 [Methylobacterium sp. 4-46] Length = 201 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 66/185 (35%), Positives = 103/185 (55%), Gaps = 6/185 (3%) Query: 8 HSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLR 67 H E R+ + G+A ++ +++P +E + FR V++ + + +QI ER DG MT+ Sbjct: 7 HHATEKRLITETGVAARVAQIVEPSLEGLGFRLVRVRVTGQNGCTVQIMAERPDGTMTVE 66 Query: 68 DCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD 127 DCE +S+ ISP+LDV++ I Y LE+SSPGIDRP+VR DF RW GH E+ + Sbjct: 67 DCEAVSRTISPLLDVDDPIGRAYHLEISSPGIDRPLVRAGDFARWAGHEAKVELAVPLEG 126 Query: 128 KQKLIGKIMGT--SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 +++ G I + L K G EL++A + A L++TD+L+R SL Sbjct: 127 RKRFRGLIRAPEGATVRIDLPDAKEGTPASYELRLA----DIGEAHLVLTDDLIRESLRR 182 Query: 186 YGSYA 190 + A Sbjct: 183 GSAPA 187 >gi|323136837|ref|ZP_08071918.1| protein of unknown function DUF150 [Methylocystis sp. ATCC 49242] gi|322398154|gb|EFY00675.1| protein of unknown function DUF150 [Methylocystis sp. ATCC 49242] Length = 255 Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 68/176 (38%), Positives = 103/176 (58%), Gaps = 5/176 (2%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 EPR+ + G+A ++ + +PV+ ++ FR V++ LL++ LQI ER DG MT+ DCE Sbjct: 15 EPRLVSETGVAARVAHLAEPVLAQLGFRLVRVRLLQQNGQTLQIMAERPDGTMTIDDCEA 74 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV--LSSGDKQ 129 SQA+SP LDV ++I YRLE+SSPG+DRP+VR SDF R GH E+ + SG ++ Sbjct: 75 ASQALSPELDVADVIANEYRLEISSPGVDRPLVRVSDFARAVGHEARIELTHPVESG-RK 133 Query: 130 KLIGKIMGTSETG--FFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 + G I G L E+ + E + + L +L++T+ L+R SL Sbjct: 134 RFRGVIQAVEGEGRNAKLTLERLDARSDEEKTVVLPLADLDEGKLMLTEALIRESL 189 >gi|299133376|ref|ZP_07026571.1| protein of unknown function DUF150 [Afipia sp. 1NLS2] gi|298593513|gb|EFI53713.1| protein of unknown function DUF150 [Afipia sp. 1NLS2] Length = 264 Score = 124 bits (310), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 62/176 (35%), Positives = 106/176 (60%), Gaps = 3/176 (1%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 E R+ + G+A ++++ +PV+E + ++ V+I + E +QI ER DG M + DCE Sbjct: 21 ERRLVVEPGVAARVAAIAEPVLEGLGYQLVRIKISGEAGCTVQIMAERPDGTMLIDDCEA 80 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+A+SP++DV + I+ YRLE+SSPGIDRP+VR+SDF R+ GH+V E+ + +++ Sbjct: 81 ISKALSPVMDVADPIQRAYRLEISSPGIDRPLVRQSDFERYTGHLVKIEMSVPHDGRKRF 140 Query: 132 IGKIMGTSETGF--FLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 G + G E G + + K E + + + SA L++T+EL+ S+ Sbjct: 141 RGTLEGI-ENGLVRITRDDVKEHKGAQEADVQLPLADIASANLVLTNELIAESMRR 195 >gi|298293855|ref|YP_003695794.1| hypothetical protein Snov_3905 [Starkeya novella DSM 506] gi|296930366|gb|ADH91175.1| protein of unknown function DUF150 [Starkeya novella DSM 506] Length = 270 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 66/174 (37%), Positives = 100/174 (57%), Gaps = 6/174 (3%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 EPR+ + G A ++ ++ PV+E + FR V++ + LQI ER DG+ + +CE Sbjct: 26 EPRLVTESGPAARVAGIVGPVLEGLGFRLVRVRISGGSPPTLQIMAERPDGSFGIDECEA 85 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 S+AISP+LDVE+ I G Y LE+SSPGIDRP+ R SDF RW GH V E+ + +++ Sbjct: 86 ASRAISPVLDVEDPISGAYNLEMSSPGIDRPLARLSDFERWAGHDVKVEMAVPVDGRKRF 145 Query: 132 IGKIMGTS--ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 G ++G E L + D +A+ + ARL++TD L+R +L Sbjct: 146 RGILVGAQREEALVRLPDAPADKPDT----VALPISDIGEARLVMTDALIREAL 195 >gi|148251678|ref|YP_001236263.1| hypothetical protein BBta_0054 [Bradyrhizobium sp. BTAi1] gi|166919104|sp|A5E863|RIMP_BRASB RecName: Full=Ribosome maturation factor rimP gi|146403851|gb|ABQ32357.1| hypothetical protein BBta_0054 [Bradyrhizobium sp. BTAi1] Length = 253 Score = 121 bits (303), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 63/174 (36%), Positives = 109/174 (62%), Gaps = 2/174 (1%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 EPR+ + G+A +++V +PV++ M +R V+I + E +Q+ ER DG M + DCE Sbjct: 16 EPRLVVEPGVAARVAAVAEPVLQGMGYRLVRIRISGEAGCTVQVMAERPDGTMQIEDCEA 75 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+A+SP+LD+ + I+ YRLE+SSPGIDRP+VR++DF R GH+V E+ ++ ++++ Sbjct: 76 VSRALSPVLDIADPIDRAYRLEISSPGIDRPLVRRTDFERHIGHLVKIEMAVAHQNRKRF 135 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 G I G G + ++ KD + + + + A+L++TDEL+ S+ Sbjct: 136 RGIITGLDGDGVCITRDDVA-KDQDP-SVVLPMTDIGDAKLVLTDELIAESMRR 187 >gi|170750128|ref|YP_001756388.1| hypothetical protein Mrad2831_3730 [Methylobacterium radiotolerans JCM 2831] gi|259585788|sp|B1LX00|RIMP_METRJ RecName: Full=Ribosome maturation factor rimP gi|170656650|gb|ACB25705.1| protein of unknown function DUF150 [Methylobacterium radiotolerans JCM 2831] Length = 257 Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 65/177 (36%), Positives = 98/177 (55%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 E R+ + G+A ++ I+ + + FR V++ + +QI ER DG T+ DCE Sbjct: 11 EKRLVREAGVAARVAQAIEGPLAGLGFRLVRVRMSNVNGCTVQIMAERPDGTFTIDDCEA 70 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+AISPILDV++ + G Y LEVSSPGIDRP+VR SDF RW G+ E+ +++ Sbjct: 71 VSRAISPILDVDDPVGGAYNLEVSSPGIDRPLVRVSDFARWAGYEAKVELSPPLDGRKRF 130 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGS 188 G + TG + + K+ +I + L A L++TDEL+R SL G Sbjct: 131 RGILGAPDPTGTTVPIDLPDVKEGLPSRIDLPLKDLAEAHLVLTDELIRESLRRGGP 187 >gi|75674220|ref|YP_316641.1| hypothetical protein Nwi_0021 [Nitrobacter winogradskyi Nb-255] gi|91207993|sp|Q3SWQ2|RIMP_NITWN RecName: Full=Ribosome maturation factor rimP gi|74419090|gb|ABA03289.1| Protein of unknown function DUF150 [Nitrobacter winogradskyi Nb-255] Length = 260 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 63/172 (36%), Positives = 110/172 (63%), Gaps = 1/172 (0%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 EPR+ + G+A ++++ PV++ M +R V+I + E +QI ER DG++ + DCE Sbjct: 16 EPRLVVEPGVAARVAAIAAPVLQGMGYRLVRIKVSGEAGCTVQIMAERPDGSIQIEDCEA 75 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+A+SP+LDV + I+ YRLE+SSPGIDRP+VR+SDF R+ GH+ E+ ++ +++ Sbjct: 76 ISKALSPVLDVADPIDKAYRLEISSPGIDRPLVRRSDFERYAGHLAKIEMAVAHQGRKRF 135 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 G + G + L ++ D +E ++ + + + ARL++TDEL+ S+ Sbjct: 136 RGVLQGVEDNAVRLHRDDIRNND-DESEVMLVMEDIADARLVLTDELIAESM 186 >gi|259585810|sp|B8IEB0|RIMP_METNO RecName: Full=Ribosome maturation factor rimP Length = 203 Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 61/181 (33%), Positives = 98/181 (54%), Gaps = 2/181 (1%) Query: 5 HFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNM 64 H E R+ + G+A ++ +++P +E + FR V++ + + +QI ER DG M Sbjct: 7 HHPADAAEKRLITETGVAARVAQIVEPSLEGLGFRLVRVRVTGQNGCTVQIMAERPDGTM 66 Query: 65 TLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS 124 T+ DCE +S+ ISP+LDV++ I Y LE+SSPGIDRP+VR DF RW GH E+ + Sbjct: 67 TVEDCESVSRTISPLLDVDDPIGRAYHLEISSPGIDRPLVRVGDFARWAGHEAKVELTVP 126 Query: 125 SGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLN 184 +++ G I + G + + K+ + + A L++TD L+R SL Sbjct: 127 LEGRKRFRGIIR--APEGESVRIDLPDAKEGTPASYDLRLRDIGEAHLVLTDALIRESLR 184 Query: 185 N 185 Sbjct: 185 R 185 >gi|220924483|ref|YP_002499785.1| hypothetical protein Mnod_4615 [Methylobacterium nodulans ORS 2060] gi|219949090|gb|ACL59482.1| protein of unknown function DUF150 [Methylobacterium nodulans ORS 2060] Length = 238 Score = 118 bits (295), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 61/181 (33%), Positives = 98/181 (54%), Gaps = 2/181 (1%) Query: 5 HFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNM 64 H E R+ + G+A ++ +++P +E + FR V++ + + +QI ER DG M Sbjct: 42 HHPADAAEKRLITETGVAARVAQIVEPSLEGLGFRLVRVRVTGQNGCTVQIMAERPDGTM 101 Query: 65 TLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS 124 T+ DCE +S+ ISP+LDV++ I Y LE+SSPGIDRP+VR DF RW GH E+ + Sbjct: 102 TVEDCESVSRTISPLLDVDDPIGRAYHLEISSPGIDRPLVRVGDFARWAGHEAKVELTVP 161 Query: 125 SGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLN 184 +++ G I + G + + K+ + + A L++TD L+R SL Sbjct: 162 LEGRKRFRGIIR--APEGESVRIDLPDAKEGTPASYDLRLRDIGEAHLVLTDALIRESLR 219 Query: 185 N 185 Sbjct: 220 R 220 >gi|182678036|ref|YP_001832182.1| hypothetical protein Bind_1050 [Beijerinckia indica subsp. indica ATCC 9039] gi|259585728|sp|B2IIK0|RIMP_BEII9 RecName: Full=Ribosome maturation factor rimP gi|182633919|gb|ACB94693.1| protein of unknown function DUF150 [Beijerinckia indica subsp. indica ATCC 9039] Length = 314 Score = 117 bits (293), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 63/179 (35%), Positives = 103/179 (57%), Gaps = 6/179 (3%) Query: 11 YEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCE 70 +EPR+ + G+A ++ + PV+ ++ R V++ + + +QI ER DG M + CE Sbjct: 26 HEPRLLQESGIAARVAVLAAPVLADLGLRLVRVKISGQNGTTVQIMAERPDGTMDVEACE 85 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 +S+A+SP+LDVE+ ++ Y LE+SSPGIDRP+VR SDF R G V E+ +++ Sbjct: 86 SVSEALSPVLDVEDPVKQAYHLEISSPGIDRPLVRLSDFERALGQEVRVELKTGLAGRKR 145 Query: 131 L---IGKIMGTSETG---FFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 IG I +S G L + K E ++ + D L ARL++T++L+R +L Sbjct: 146 FRGTIGPIEASSPIGGSKGALRLTRTDAKPEEETEVLLPLDDLHEARLVLTEDLIRQAL 204 >gi|163852119|ref|YP_001640162.1| hypothetical protein Mext_2700 [Methylobacterium extorquens PA1] gi|218530877|ref|YP_002421693.1| hypothetical protein Mchl_2926 [Methylobacterium chloromethanicum CM4] gi|259585785|sp|B7KQK1|RIMP_METC4 RecName: Full=Ribosome maturation factor rimP gi|259585786|sp|A9W685|RIMP_METEP RecName: Full=Ribosome maturation factor rimP gi|163663724|gb|ABY31091.1| protein of unknown function DUF150 [Methylobacterium extorquens PA1] gi|218523180|gb|ACK83765.1| protein of unknown function DUF150 [Methylobacterium chloromethanicum CM4] Length = 251 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 64/179 (35%), Positives = 99/179 (55%) Query: 7 LHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTL 66 + E R+ + G+A ++ +++ IE + FR V++ + +QI ER DG M + Sbjct: 1 MAEPTEKRLVSETGVAARVAQIVEGPIEGLGFRLVRVKISNTNGRTVQIMAERPDGTMGV 60 Query: 67 RDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 +CE +S+AISPILD+E+ + Y LEVSSPGIDRP+VR SDF RW G+ E+ + Sbjct: 61 DECEAVSRAISPILDLEDPVGDAYYLEVSSPGIDRPLVRVSDFERWAGYEAKVELAVPMD 120 Query: 127 DKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 +++ G I S G + + K +I + L A L++TDEL+R SL Sbjct: 121 GRKRFRGIIGVPSADGTTVPIDLPDVKPGLPSRIDVPLRDLGEAHLVLTDELIRESLRR 179 >gi|254561863|ref|YP_003068958.1| hypothetical protein METDI3462 [Methylobacterium extorquens DM4] gi|254269141|emb|CAX25105.1| conserved hypothetical protein, UPF0090 protein [Methylobacterium extorquens DM4] Length = 251 Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 64/179 (35%), Positives = 99/179 (55%) Query: 7 LHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTL 66 + E R+ + G+A ++ +++ IE + FR V++ + +QI ER DG M + Sbjct: 1 MAEPTEKRLVSETGVAARVAQIVEGPIEGLGFRLVRVKISNTNGRTVQIMAERPDGTMGV 60 Query: 67 RDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 +CE +S+AISPILD+E+ + Y LEVSSPGIDRP+VR SDF RW G+ E+ + Sbjct: 61 DECEAVSRAISPILDLEDPVGDAYYLEVSSPGIDRPLVRVSDFERWAGYEAKVELAVPMD 120 Query: 127 DKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 +++ G I S G + + K +I + L A L++TDEL+R SL Sbjct: 121 GRKRFRGIIGVPSADGTTVPIDLPDVKPGLPSRIDVPLRDLGEAHLVLTDELIRESLRR 179 >gi|188582067|ref|YP_001925512.1| hypothetical protein Mpop_2822 [Methylobacterium populi BJ001] gi|259585787|sp|B1ZDR1|RIMP_METPB RecName: Full=Ribosome maturation factor rimP gi|179345565|gb|ACB80977.1| protein of unknown function DUF150 [Methylobacterium populi BJ001] Length = 255 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 62/179 (34%), Positives = 100/179 (55%) Query: 7 LHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTL 66 + E R+ + G+A ++ +++ IE + FR V++ + +QI ER DG M + Sbjct: 1 MAEPTEKRLVSETGVAARVAQIVEGPIEGLGFRLVRVKISNTNGCTVQIMAERPDGTMGV 60 Query: 67 RDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 +CE +S+AISPILD+E+ + G Y LE+SSPGIDRP+VR SDF RW G+ E+ + Sbjct: 61 DECETVSRAISPILDLEDPVGGAYYLEISSPGIDRPLVRVSDFERWAGYEAKVELAVPMD 120 Query: 127 DKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 +++ G + S G + + K +I + L A L++TD+L+R SL Sbjct: 121 GRKRFRGILGVPSADGATVPIDLPDVKPGLPSRIDLPLRDLGEAHLVLTDDLIRESLRR 179 >gi|146337224|ref|YP_001202272.1| hypothetical protein BRADO0050 [Bradyrhizobium sp. ORS278] gi|259585732|sp|A4YJE6|RIMP_BRASO RecName: Full=Ribosome maturation factor rimP gi|146190030|emb|CAL74022.1| conserved hypothetical protein; putative YhbC-like protein [Bradyrhizobium sp. ORS278] Length = 233 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 57/155 (36%), Positives = 96/155 (61%), Gaps = 2/155 (1%) Query: 31 PVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHY 90 PV++ M +R V+I + E +Q+ ER DG M + DCE +S+A+SP+LD+ + I+ Y Sbjct: 15 PVLQGMGYRLVRIRISGESGCTVQVMAERPDGTMQIEDCEAVSRALSPVLDIADPIDRAY 74 Query: 91 RLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKR 150 RLE+SSPGIDRP+VR+SDF R GH+V E+ ++ ++++ G I G G + ++ Sbjct: 75 RLEISSPGIDRPLVRRSDFERHVGHLVKIEMAVAYQNRKRFRGIIKGVEGDGVRITRDDV 134 Query: 151 GEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 KD + + + + A++++TDEL+ S+ Sbjct: 135 A-KDADP-DVVLPMADIGDAKMVLTDELIAESMRR 167 >gi|115522228|ref|YP_779139.1| hypothetical protein RPE_0199 [Rhodopseudomonas palustris BisA53] gi|122298064|sp|Q07V75|RIMP_RHOP5 RecName: Full=Ribosome maturation factor rimP gi|115516175|gb|ABJ04159.1| protein of unknown function DUF150 [Rhodopseudomonas palustris BisA53] Length = 272 Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 59/151 (39%), Positives = 94/151 (62%), Gaps = 4/151 (2%) Query: 36 MSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVS 95 M +R V+I + E +QI ER DG M + DCE +S+A+SP+LDV + I+ YRLEVS Sbjct: 52 MGYRLVRIKVSGELGCTVQIMAERPDGTMLIEDCEAISKALSPVLDVADPIDKAYRLEVS 111 Query: 96 SPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEK-RGEKD 154 SPGIDRP+VR+SDF R+ G++V ++ + +++ G + G L++E RG+ D Sbjct: 112 SPGIDRPLVRRSDFERYAGYLVKIDMAVPHQGRKRFRGILGGIEGDAVHLQREGVRGDDD 171 Query: 155 MNELQIAISFDSLLSARLIVTDELLRASLNN 185 + ++ + + ARL++TDEL+ S+ Sbjct: 172 P---AVLLTIEDISDARLVLTDELIAESMRR 199 >gi|240139448|ref|YP_002963923.1| hypothetical protein MexAM1_META1p2893 [Methylobacterium extorquens AM1] gi|240009420|gb|ACS40646.1| conserved hypothetical protein, UPF0090 protein [Methylobacterium extorquens AM1] Length = 251 Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 64/179 (35%), Positives = 99/179 (55%) Query: 7 LHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTL 66 + E R+ + G+A ++ +++ IE + FR V++ + +QI ER DG M + Sbjct: 1 MAEPTEKRLVSETGVAARVAQIVEGPIEGLGFRLVRVKISNTNGRTVQIMAERPDGTMGV 60 Query: 67 RDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 +CE +S+AISPILD+E+ + Y LEVSSPGIDRP+VR SDF RW G+ E+ + Sbjct: 61 DECEAVSRAISPILDLEDPVGDAYYLEVSSPGIDRPLVRVSDFERWAGYEAKVELAVPMD 120 Query: 127 DKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 +++ G I S G + + K +I + L A L++TDEL+R SL Sbjct: 121 GRKRFRGIIGVPSADGTTVPIDLPDVKPGLLSRIDVPLRDLGEAHLVLTDELIRESLRR 179 >gi|306842730|ref|ZP_07475372.1| Protein of unknown function DUF150 [Brucella sp. BO2] gi|306287074|gb|EFM58579.1| Protein of unknown function DUF150 [Brucella sp. BO2] Length = 158 Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 56/130 (43%), Positives = 81/130 (62%), Gaps = 2/130 (1%) Query: 56 FVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGH 115 ER DG MT+ DCE +S+ ++P+LDVE+ I G Y LE+SSPGIDRP+VRKSDF W GH Sbjct: 1 MAERPDGTMTVDDCELVSRTVAPVLDVEDPISGKYHLEISSPGIDRPLVRKSDFSDWAGH 60 Query: 116 VVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + E + ++KL G+I+ +E ++ NE + I FD + ARL++T Sbjct: 61 IAKVETSIVHEGRKKLRGRIVVGDADSVTIESDQISYG--NEPVVRIPFDLISDARLVLT 118 Query: 176 DELLRASLNN 185 D+L+R +L Sbjct: 119 DDLIRDALRK 128 >gi|312115895|ref|YP_004013491.1| hypothetical protein Rvan_3197 [Rhodomicrobium vannielii ATCC 17100] gi|311221024|gb|ADP72392.1| protein of unknown function DUF150 [Rhodomicrobium vannielii ATCC 17100] Length = 221 Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 61/172 (35%), Positives = 101/172 (58%), Gaps = 6/172 (3%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELS 73 R + G A D++++I+PV+E+M FR V++++ + +QI ++ DG + + DC ++S Sbjct: 21 RFTREFGAAADLAALIEPVLEDMGFRLVRVTMSKRDGATIQIMADKADGAINVDDCAQIS 80 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 + ISP+LD + I+ Y LEVSSPGIDR +VR SDF W G E+ +++ G Sbjct: 81 RRISPLLDAHDPIKDRYYLEVSSPGIDRILVRPSDFEDWAGFETKVELKELIDGRKRFRG 140 Query: 134 KIMGTSETGFFLEKE--KRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 + G L+ + ++GE I + D + A+L++TDEL+RASL Sbjct: 141 ILEGYENGEMLLQVQLDEKGEPQT----IGLPVDLIHDAKLVLTDELIRASL 188 >gi|126738453|ref|ZP_01754158.1| hypothetical protein RSK20926_08312 [Roseobacter sp. SK209-2-6] gi|126720252|gb|EBA16958.1| hypothetical protein RSK20926_08312 [Roseobacter sp. SK209-2-6] Length = 197 Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 95/168 (56%), Gaps = 4/168 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ ++ PVIE++ F V+I L+ K LQI ++ +G + + DC E+S A+S LDVE+ Sbjct: 15 LAEILIPVIEDLGFELVRIRLMSGKTTTLQIMADKPEGGIEVDDCAEISNAVSATLDVED 74 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I Y LEVSSPGIDRP+ R DF + G+ E G +++ G++ GT E Sbjct: 75 PILDAYSLEVSSPGIDRPLTRMKDFDMFEGYEAKLETEELVGGRRRFKGELAGTEEDEVL 134 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + E +GE + I + FD L A+L++TDEL++ L + L Sbjct: 135 INIEDQGET----VTIGLKFDWLTDAKLVLTDELIKEMLRQRKAAGTL 178 >gi|254450327|ref|ZP_05063764.1| hypothetical protein OA238_928 [Octadecabacter antarcticus 238] gi|198264733|gb|EDY89003.1| hypothetical protein OA238_928 [Octadecabacter antarcticus 238] Length = 209 Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 57/161 (35%), Positives = 95/161 (59%), Gaps = 4/161 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 I+ +I P +E++ F V++ L+ K +LQI +R DG + + DC E+S A+S +LDVE+ Sbjct: 26 ITEIITPTVEDLGFEVVRVRLMTGKESILQIMAQRPDGTIEVDDCGEISTAVSALLDVED 85 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I+ + LEVSSPGIDRP+ R DF++W+G+ E +++ G + G Sbjct: 86 PIKDVFTLEVSSPGIDRPLTRFKDFVQWDGNEAKIETEELIDGRRRFKGMLRGVEGDEVL 145 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 +E E +GE + I + F+ L A+L++T++L+R L Sbjct: 146 IEIEDKGEP----VTIGLKFEWLTDAKLVLTEDLIRGVLRG 182 >gi|258543557|ref|YP_003188990.1| hypothetical protein APA01_25050 [Acetobacter pasteurianus IFO 3283-01] gi|256634635|dbj|BAI00611.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01] gi|256637691|dbj|BAI03660.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-03] gi|256640745|dbj|BAI06707.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-07] gi|256643800|dbj|BAI09755.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-22] gi|256646855|dbj|BAI12803.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-26] gi|256649908|dbj|BAI15849.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-32] gi|256652898|dbj|BAI18832.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655952|dbj|BAI21879.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-12] Length = 201 Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 57/173 (32%), Positives = 100/173 (57%), Gaps = 8/173 (4%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNM-TLRDCEELSQAISP 78 GL ++++I P +E+M + V++++L + +QI +R DG++ + DCE +S A+ Sbjct: 19 GLEARVAALIAPAVEDMGYEIVRVAVLGRERPTVQIMADRKDGSLINVEDCERISHAVGA 78 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LDVE+ I G + LEVSS GIDRP+ R D+ R+ GH V E++L +++ G ++G+ Sbjct: 79 VLDVEDPIPGAWTLEVSSAGIDRPLTRAKDWNRFAGHQVKAEVLLPVNGRRRFSGTVLGS 138 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAG 191 T + + + ++A+ + L ARL++TD L+ AS S G Sbjct: 139 DGTVARMRLD-------DGTEVALPLEELRRARLVLTDALIEASARMVQSAPG 184 >gi|209544213|ref|YP_002276442.1| hypothetical protein Gdia_2067 [Gluconacetobacter diazotrophicus PAl 5] gi|259585817|sp|A9HF10|RIMP_GLUDA RecName: Full=Ribosome maturation factor rimP gi|209531890|gb|ACI51827.1| protein of unknown function DUF150 [Gluconacetobacter diazotrophicus PAl 5] Length = 207 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 103/173 (59%), Gaps = 8/173 (4%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNM-TLRDCEELSQAISP 78 GL +++++ PV+ +M F V++++L ++ +QI +R DG + + DCE++S A+ Sbjct: 10 GLDAKVAAIVAPVLADMGFELVRVAILGRESPTVQIMADRADGTLIAIEDCEQISHAVGA 69 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LDVE+ + G + LEVSS GIDRP+ R D+ R+ GH+ E+ + +++ G ++G Sbjct: 70 VLDVEDPLPGAWTLEVSSAGIDRPLTRAKDWTRFAGHLAKAEVNIPIDGRKRFSGILLG- 128 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAG 191 +E GF + + G ++A+ + ARL++TDEL+ AS + + G Sbjct: 129 AEDGFGRLRLEDG------TEVALPLSDMRRARLVLTDELIAASAHMMRAPGG 175 >gi|255264773|ref|ZP_05344115.1| hypothetical protein TR2A62_2551 [Thalassiobium sp. R2A62] gi|255107108|gb|EET49782.1| hypothetical protein TR2A62_2551 [Thalassiobium sp. R2A62] Length = 190 Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 60/161 (37%), Positives = 91/161 (56%), Gaps = 8/161 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 I+ +IQP++E M + V+I L+ K LQI ++ DG + + DC E+S A+S +LDVE+ Sbjct: 14 IAEIIQPMMESMGYELVRIRLMSGKATTLQIMAQKPDGTIEVDDCAEISTAVSALLDVED 73 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I Y LEVSSPGIDRP+ R DF +W G+ E +++ G++ GT Sbjct: 74 PILDAYELEVSSPGIDRPLTRVKDFAQWEGYEAKIETDELIDGRRRFKGQLAGTEGDEIL 133 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 +E E E I + F+ L A+L++TD+L+R L Sbjct: 134 IEIE--------EGTIGLKFEWLSDAKLVLTDDLIRDVLRG 166 >gi|254439640|ref|ZP_05053134.1| conserved hypothetical protein [Octadecabacter antarcticus 307] gi|198255086|gb|EDY79400.1| conserved hypothetical protein [Octadecabacter antarcticus 307] Length = 188 Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 57/159 (35%), Positives = 95/159 (59%), Gaps = 4/159 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 I+ +I P IE++ F V++ L+ K +LQI ++ DG + + DC E+S A+S +LDVE+ Sbjct: 5 ITEIITPTIEDLGFEVVRVRLMTGKESILQIMAQKPDGTIEVDDCGEISTAVSALLDVED 64 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I+ + LEVSSPGIDRP+ R DF++W+G+ E +++ G + G Sbjct: 65 PIKDVFTLEVSSPGIDRPLTRLKDFVQWDGNEAKIETEELIDGRRRFKGMLRGVEGDEVL 124 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 +E E+ GE + I + F+ L A+L++T++L+R L Sbjct: 125 IEIEENGEP----VTIGLKFEWLTDAKLVLTEDLIRGVL 159 >gi|294675769|ref|YP_003576384.1| hypothetical protein RCAP_rcc00212 [Rhodobacter capsulatus SB 1003] gi|294474589|gb|ADE83977.1| protein of unknown function DUF150 [Rhodobacter capsulatus SB 1003] Length = 199 Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 62/166 (37%), Positives = 94/166 (56%), Gaps = 4/166 (2%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 G+ ++ +I P IE + F V+I + ++ LLQI +R +G + + DC +S A+S + Sbjct: 9 GIDRRLADIIGPTIEGLGFELVRIRMQGGRHPLLQIMADRPEGGIDVDDCGAISTAVSAV 68 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ IE Y LEVSSPGIDRP+ R DF W G+ E +++ G + GT Sbjct: 69 LDVEDPIEEKYTLEVSSPGIDRPLTRLKDFDVWEGYEARIETEEQIDGRKRFKGILRGTE 128 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 + +E E +GE+ + I + FD L A+LI+TDEL+ L Sbjct: 129 DDEVLIEIENQGEQ----VTIGLKFDWLSDAKLILTDELIAEMLRQ 170 >gi|89067478|ref|ZP_01154991.1| hypothetical protein OG2516_11576 [Oceanicola granulosus HTCC2516] gi|89047047|gb|EAR53101.1| hypothetical protein OG2516_11576 [Oceanicola granulosus HTCC2516] Length = 197 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 62/161 (38%), Positives = 93/161 (57%), Gaps = 4/161 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 I+ +I PVI +M F +V++ L +LQI ++ DG + + +C E+S A+S +LDVE+ Sbjct: 14 ITEIIDPVITDMGFETVRVRLQGGNTPVLQIMAQKPDGTIEVDECAEISTAVSAVLDVED 73 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I Y LEVSSPGIDRP+ R DF RW G+V E +++ G++ G Sbjct: 74 PILDAYTLEVSSPGIDRPLTRLKDFDRWQGYVAKLETTELIDGRRRFKGELGGVEGGEVL 133 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 +E E+ GE + I + FD L A+L++TDEL+R L Sbjct: 134 IEIEENGEP----VTIGLQFDWLSDAKLVLTDELIREVLKT 170 >gi|146278787|ref|YP_001168946.1| hypothetical protein Rsph17025_2754 [Rhodobacter sphaeroides ATCC 17025] gi|166988606|sp|A4WW77|RIMP_RHOS5 RecName: Full=Ribosome maturation factor rimP gi|145557028|gb|ABP71641.1| protein of unknown function DUF150 [Rhodobacter sphaeroides ATCC 17025] Length = 204 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 61/157 (38%), Positives = 91/157 (57%), Gaps = 7/157 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ ++ PVIE M F V++ L+ K LQI +R DG + + +C ++S A+S +LDVE+ Sbjct: 14 LADIVTPVIEGMGFELVRLRLMSGKTRTLQIMADRPDGGIVVDECADISTAVSAVLDVED 73 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT--SETG 142 IE +Y LEVSSPGIDRP+ R DF W G+ E +++ G++ GT E Sbjct: 74 PIEDNYTLEVSSPGIDRPLTRLKDFDAWAGYEARIETAELIDGRRRFKGELAGTEGDEVL 133 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELL 179 +E K G + I + FD L A+LI+TDEL+ Sbjct: 134 ITIEDGKEG-----FVTIGLKFDWLSDAKLILTDELI 165 >gi|110677787|ref|YP_680794.1| hypothetical protein RD1_0389 [Roseobacter denitrificans OCh 114] gi|123065971|sp|Q16D35|RIMP_ROSDO RecName: Full=Ribosome maturation factor rimP gi|109453903|gb|ABG30108.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114] Length = 196 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 94/168 (55%), Gaps = 8/168 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I PVIE+M F V++ L+ K+ +LQI +R DG + + DC E+SQA+S +LDVE+ Sbjct: 15 MAEIITPVIEDMGFELVRVRLMSGKSTILQIMADRPDGGIEVDDCAEISQAVSAVLDVED 74 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I Y LEVSSPGIDRP+ R DF + G+ E +++ G + G + Sbjct: 75 PILDEYTLEVSSPGIDRPLTRLKDFEMFEGYEAKIETGDMVDGRRRFKGALAGVEDDEVL 134 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + ++ E I + FD L A+L++TD+L++ L + L Sbjct: 135 I--------NIEEGTIGLKFDWLSDAKLVLTDDLIKEMLRQRKAAGAL 174 >gi|254475663|ref|ZP_05089049.1| hypothetical protein RR11_1501 [Ruegeria sp. R11] gi|214029906|gb|EEB70741.1| hypothetical protein RR11_1501 [Ruegeria sp. R11] Length = 196 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 4/168 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I PVIE++ F V+I L+ K LQI ++ DG + + DC E+S A+S LDVE+ Sbjct: 15 LAEIITPVIEDLGFELVRIRLMSGKTTTLQIMADKPDGGIEVDDCAEISNAVSATLDVED 74 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I Y LEVSSPGIDRP+ R DF + G+ E +++ G++ G E Sbjct: 75 PILDAYALEVSSPGIDRPLTRLKDFDMFEGYEAKIETTELIDGRRRFKGELAGVEEDEVL 134 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + E+ GE + I + FD L A+L++TD+L++ L + L Sbjct: 135 INIEEHGET----VTIGLKFDWLSDAKLVLTDDLIKEMLRQRKAAGTL 178 >gi|254465218|ref|ZP_05078629.1| hypothetical protein RBY4I_1824 [Rhodobacterales bacterium Y4I] gi|206686126|gb|EDZ46608.1| hypothetical protein RBY4I_1824 [Rhodobacterales bacterium Y4I] Length = 196 Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 55/159 (34%), Positives = 94/159 (59%), Gaps = 4/159 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ ++ PVIE++ + V+I L+ K+ LQI ++ +G + + DC E+S A+S LDVE+ Sbjct: 15 LAEIVTPVIEDLGYELVRIRLMSGKSTTLQIMADKPNGGIEVDDCAEISNAVSAALDVED 74 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I Y LEVSSPGIDRP+ R DF + G+ E + G +++ G++ GT Sbjct: 75 PIIDAYALEVSSPGIDRPLTRMKDFEMFEGYEAKLETAETVGGRRRFKGELAGTEGDEVL 134 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 + E +G+ + + + FD L A+L++TD+L++ L Sbjct: 135 INIEDQGQT----VTVGLKFDWLSDAKLVLTDDLIKEML 169 >gi|84684620|ref|ZP_01012521.1| hypothetical protein 1099457000260_RB2654_13384 [Maritimibacter alkaliphilus HTCC2654] gi|84667599|gb|EAQ14068.1| hypothetical protein RB2654_13384 [Rhodobacterales bacterium HTCC2654] Length = 194 Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 91/161 (56%), Gaps = 4/161 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +++PVIE+M + V++ L LQI ++ +G + + D ++ A+ LDVE+ Sbjct: 14 LADIVRPVIEDMGYELVRLRLQGGNTQTLQIMADKPEGGIEVDDLSAINTALGATLDVED 73 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 IEG Y LEVSSPGIDRP+ R DF W+G + E +++ G + GT + Sbjct: 74 PIEGEYNLEVSSPGIDRPLTRYKDFDTWDGWIAKVETSELIEGRKRFKGTLQGTEDGEIL 133 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 +E E +GE + I ++FD L A+L++TDEL+ L Sbjct: 134 IEIEDKGEP----VTIGLTFDLLADAKLVLTDELIAEMLKQ 170 >gi|329113269|ref|ZP_08242052.1| Ribosome maturation factor RimP [Acetobacter pomorum DM001] gi|326697410|gb|EGE49068.1| Ribosome maturation factor RimP [Acetobacter pomorum DM001] Length = 201 Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 97/164 (59%), Gaps = 8/164 (4%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNM-TLRDCEELSQAISP 78 GL ++++I P +E+M + V++++L + +QI +R DG++ + DCE +S A+ Sbjct: 19 GLEARVAALIAPAVEDMGYEIVRVAVLGRERPTVQIMADRKDGSLINVEDCERISHAVGA 78 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LDVE+ I G + LEVSS GIDRP+ R D+ R+ GH E++L +++ G ++G+ Sbjct: 79 VLDVEDPIPGAWTLEVSSAGIDRPLTRAKDWNRFAGHQAKAEVLLPVNGRRRFSGVVLGS 138 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS 182 T + + + ++A+ + L ARL++TD L+ AS Sbjct: 139 DGTVARMRLD-------DGTEVALPLEELRRARLVLTDALIEAS 175 >gi|161170253|gb|ABX59223.1| uncharacterized protein conserved in bacteria [uncultured marine bacterium EB000_55B11] gi|297183782|gb|ADI19905.1| hypothetical protein [uncultured marine bacterium EB000_55B11] Length = 222 Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 58/158 (36%), Positives = 91/158 (57%), Gaps = 8/158 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++S++QPVIE++ + V+I L+ K LQI ++ +G + + DC ++S IS ILDVE+ Sbjct: 53 MASIVQPVIEDLGYELVRIRLMSGKATTLQIMADKPNGGIDVNDCSKISTEISAILDVED 112 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 IE Y LEVSSPG+DRP+ R DF WNG + E +++ G G + Sbjct: 113 PIEAEYALEVSSPGMDRPLTRLKDFQTWNGFEIKVETSELIDGQRRFKGLSRGIEDNDVL 172 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS 182 +E + + I + F+ L A+L++TDEL+ AS Sbjct: 173 IE--------IPQGTIGLDFEWLSDAKLVLTDELVAAS 202 >gi|114769757|ref|ZP_01447367.1| hypothetical protein OM2255_09321 [alpha proteobacterium HTCC2255] gi|114549462|gb|EAU52344.1| hypothetical protein OM2255_09321 [alpha proteobacterium HTCC2255] Length = 183 Score = 107 bits (267), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 58/158 (36%), Positives = 91/158 (57%), Gaps = 8/158 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++S++QPVIE++ + V+I L+ K LQI ++ +G + + DC ++S IS ILDVE+ Sbjct: 14 MASIVQPVIEDLGYELVRIRLMSGKATTLQIMADKPNGGIDVNDCSKISTEISAILDVED 73 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 IE Y LEVSSPG+DRP+ R DF WNG + E +++ G G + Sbjct: 74 PIEAEYALEVSSPGMDRPLTRLKDFQTWNGFEIKVETSELIDGQRRFKGLSRGIEDNDVL 133 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS 182 +E + + I + F+ L A+L++TDEL+ AS Sbjct: 134 IE--------IPQGTIGLDFEWLSDAKLVLTDELVAAS 163 >gi|83313173|ref|YP_423437.1| hypothetical protein amb4074 [Magnetospirillum magneticum AMB-1] gi|123540593|sp|Q2VZU7|RIMP_MAGSA RecName: Full=Ribosome maturation factor rimP gi|82948014|dbj|BAE52878.1| Uncharacterized protein conserved in bacteria [Magnetospirillum magneticum AMB-1] Length = 166 Score = 107 bits (267), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 62/170 (36%), Positives = 95/170 (55%), Gaps = 10/170 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDG-NMTLRDCEELSQAIS 77 M L + ++I P ++ M + V++ L ++ L LQI +R DG M + DC ++S+++S Sbjct: 1 MDLQSRLEALIAPSLDAMGYELVRVQLQGKQRLTLQIMADRKDGVMMAVDDCADISRSVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I Y LEVSSPGIDRP+ R DF+ W G E +++ GK++G Sbjct: 61 ALLDVEDPISAAYTLEVSSPGIDRPLTRAKDFVAWAGFEAKMESCQPIDGRKRFRGKLLG 120 Query: 138 TSETG--FFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 E G L E GE IAI + A+L++TDEL+ A+L + Sbjct: 121 LDEAGVNVRLVIEAAGE-------IAIPLADVRGAKLVLTDELIAATLKD 163 >gi|83595107|ref|YP_428859.1| hypothetical protein Rru_A3778 [Rhodospirillum rubrum ATCC 11170] gi|91208354|sp|Q2RMS3|RIMP_RHORT RecName: Full=Ribosome maturation factor rimP gi|83578021|gb|ABC24572.1| Protein of unknown function DUF150 [Rhodospirillum rubrum ATCC 11170] Length = 225 Score = 107 bits (267), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 100/176 (56%), Gaps = 3/176 (1%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDG-NMTLRDCEELSQAI 76 D + G + ++ P ++ M + V+++LL +N LQ+ ER DG MT+ DCE +S+A+ Sbjct: 35 DARMMGHLEKLLAPTLDAMGYEVVRVTLLGSQNPTLQVMAERLDGVAMTVSDCETISRAL 94 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 +LDVE+ I G Y LE+SSPGIDRP+ R D+ R+ GH E +++ G ++ Sbjct: 95 GALLDVEDPIAGRYSLEISSPGIDRPLTRPKDYARFAGHEARIETDRLIEGHRRMKGLLL 154 Query: 137 GTSE--TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 G E T E + +D ++ I F +++ A+L++TD L+ +L + + A Sbjct: 155 GIDEDRTVRLRLIEGKAAEDGTLPEVEIPFGAIVKAKLLLTDALIAKALKDAEALA 210 >gi|162147157|ref|YP_001601618.1| hypothetical protein GDI_1362 [Gluconacetobacter diazotrophicus PAl 5] gi|161785734|emb|CAP55305.1| conserved protein [Gluconacetobacter diazotrophicus PAl 5] Length = 193 Score = 107 bits (267), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 101/168 (60%), Gaps = 8/168 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNM-TLRDCEELSQAISPILDVE 83 +++++ PV+ +M F V++++L ++ +QI +R DG + + DCE++S A+ +LDVE Sbjct: 1 MAAIVAPVLADMGFELVRVAILGRESPTVQIMADRADGTLIAIEDCEQISHAVGAVLDVE 60 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + + G + LEVSS GIDRP+ R D+ R+ GH+ E+ + +++ G ++G +E GF Sbjct: 61 DPLPGAWTLEVSSAGIDRPLTRAKDWTRFAGHLAKAEVNIPIDGRKRFSGILLG-AEDGF 119 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAG 191 + + G ++A+ + ARL++TDEL+ AS + + G Sbjct: 120 GRLRLEDG------TEVALPLSDMRRARLVLTDELIAASAHMMRAPGG 161 >gi|296114400|ref|ZP_06833054.1| hypothetical protein GXY_01428 [Gluconacetobacter hansenii ATCC 23769] gi|295979161|gb|EFG85885.1| hypothetical protein GXY_01428 [Gluconacetobacter hansenii ATCC 23769] Length = 210 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 99/164 (60%), Gaps = 8/164 (4%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-MTLRDCEELSQAISP 78 GL I+ +I P + +M F V+++++ ++ +QI +R DG+ +T+ DCE++S A+ Sbjct: 10 GLDARIADMIGPALVDMGFELVRVAVMGRESPTVQIMADRADGSQITINDCEQISHAVGA 69 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 ILDVE+ + G + LEVSS GIDRP+ R D+ R+ GH+ E+ + +++ G ++G Sbjct: 70 ILDVEDPLSGEWTLEVSSAGIDRPLTRPKDWDRYAGHLAKAEMNMPVDGRKRFSGIVLGA 129 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS 182 + G L + G ++A+ F+ + ARL++TD L+ AS Sbjct: 130 RD-GHGLMRLDDG------AEVALPFEEMRKARLVLTDALIEAS 166 >gi|330991198|ref|ZP_08315150.1| Ribosome maturation factor rimP [Gluconacetobacter sp. SXCC-1] gi|329761691|gb|EGG78183.1| Ribosome maturation factor rimP [Gluconacetobacter sp. SXCC-1] Length = 227 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 98/164 (59%), Gaps = 8/164 (4%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNM-TLRDCEELSQAISP 78 GL I++++ P + +M F V++++L ++ +QI +R DG + + DCE++S A+ Sbjct: 21 GLDARIAAMVAPALADMGFDLVRVAVLGRESPTVQIMADRADGTLIAIEDCEQISHAVGA 80 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 ILDVE+ + G + LEVSS GIDRP+ R D+ R+ GH+ E+ + +++ G ++G Sbjct: 81 ILDVEDPLPGAWTLEVSSAGIDRPLTRAKDWERFAGHLARAEMNMPIEGRKRFAGIVLGA 140 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS 182 + G L + G ++A+ F + ARL++TDEL+ AS Sbjct: 141 RD-GHGLMRLDDG------TEVALPFAEMRKARLVLTDELIEAS 177 >gi|221640657|ref|YP_002526919.1| hypothetical protein RSKD131_2558 [Rhodobacter sphaeroides KD131] gi|254765045|sp|B9KPN3|RIMP_RHOSK RecName: Full=Ribosome maturation factor rimP gi|221161438|gb|ACM02418.1| Hypothetical Protein RSKD131_2558 [Rhodobacter sphaeroides KD131] Length = 204 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 60/157 (38%), Positives = 90/157 (57%), Gaps = 7/157 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ ++ PVIE M F V++ L+ K LQI +R DG + + +C E+S A+S LDVE+ Sbjct: 14 LADIVTPVIEGMGFELVRLRLMSGKTRTLQIMADRPDGGIVVDECAEISTAVSAALDVED 73 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT--SETG 142 IE +Y LEVSSPGIDRP+ R DF W G+ E +++ G++ GT E Sbjct: 74 PIEENYTLEVSSPGIDRPLTRLKDFDVWTGYEARIETTELIDGRRRFKGELAGTEGDEVL 133 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELL 179 +E + G + I + FD L A+LI+T+EL+ Sbjct: 134 ITIEDGRDG-----YVTIGLKFDWLADAKLILTEELI 165 >gi|163733004|ref|ZP_02140448.1| hypothetical protein RLO149_10100 [Roseobacter litoralis Och 149] gi|161393539|gb|EDQ17864.1| hypothetical protein RLO149_10100 [Roseobacter litoralis Och 149] Length = 231 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 58/159 (36%), Positives = 90/159 (56%), Gaps = 8/159 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I PVIE+M F V++ L+ K+ +LQI ++ DG + + DC E+SQA+S +LDVE+ Sbjct: 50 MAEIITPVIEDMGFELVRVRLMSGKSTILQIMADKPDGGIEVDDCAEISQAVSAVLDVED 109 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I Y LEVSSPGIDRP+ R DF + G+ E +++ G + G Sbjct: 110 PILDEYTLEVSSPGIDRPLTRLKDFEMFEGYEAKIETGEMIDGRRRFKGALAGVENDEVL 169 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 + E E I + FD L A+L++TD+L++ L Sbjct: 170 INVE--------EGTIGLKFDWLSDAKLVLTDDLIKEML 200 >gi|77464743|ref|YP_354247.1| hypothetical protein RSP_1162 [Rhodobacter sphaeroides 2.4.1] gi|91208409|sp|Q3IYN8|RIMP_RHOS4 RecName: Full=Ribosome maturation factor rimP gi|77389161|gb|ABA80346.1| hypothetical protein RSP_1162 [Rhodobacter sphaeroides 2.4.1] Length = 204 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 58/155 (37%), Positives = 89/155 (57%), Gaps = 3/155 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ ++ PVIE M F V++ L+ K LQI +R DG + + +C E+S A+S LDVE+ Sbjct: 14 LADIVTPVIEGMGFELVRLRLMSGKTRTLQIMADRPDGGIVVDECAEISTAVSAALDVED 73 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 IE +Y LEVSSPGIDRP+ R DF W G+ E +++ G++ GT Sbjct: 74 PIEENYTLEVSSPGIDRPLTRLKDFEVWTGYEARIETTELIDGRRRFKGELAGTEGDEVL 133 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIVTDELL 179 + E + + + I + FD L A+LI+T+EL+ Sbjct: 134 ITIEDGRD---SYVTIGLKFDWLADAKLILTEELI 165 >gi|126463583|ref|YP_001044697.1| hypothetical protein Rsph17029_2823 [Rhodobacter sphaeroides ATCC 17029] gi|166988525|sp|A3PNK9|RIMP_RHOS1 RecName: Full=Ribosome maturation factor rimP gi|126105247|gb|ABN77925.1| protein of unknown function DUF150 [Rhodobacter sphaeroides ATCC 17029] Length = 204 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 58/155 (37%), Positives = 89/155 (57%), Gaps = 3/155 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ ++ PVIE M F V++ L+ K LQI +R DG + + +C E+S A+S LDVE+ Sbjct: 14 LADIVTPVIEGMGFELVRLRLMSGKTRTLQIMADRPDGGIVVDECAEISTAVSAALDVED 73 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 IE +Y LEVSSPGIDRP+ R DF W G+ E +++ G++ GT Sbjct: 74 PIEENYTLEVSSPGIDRPLTRLKDFDVWTGYEARIETTELIDGRRRFKGELAGTEGDEVL 133 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIVTDELL 179 + E + + + I + FD L A+LI+T+EL+ Sbjct: 134 ITIEDGRD---SYVTIGLKFDWLADAKLILTEELI 165 >gi|288959697|ref|YP_003450038.1| hypothetical protein AZL_028560 [Azospirillum sp. B510] gi|288912005|dbj|BAI73494.1| hypothetical protein AZL_028560 [Azospirillum sp. B510] Length = 166 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 95/165 (57%), Gaps = 9/165 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-MTLRDCEELSQAIS 77 M G I +I P +E M + V++ + + +LQI ER DG MT+ DC ++S+++S Sbjct: 1 MDATGRIEQIITPSVEAMGYEVVRVQISGGQRAVLQIMAERADGAPMTVEDCADISRSVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I Y LEVSSPGIDRP+ R DF R+ G E ++ +++ G + G Sbjct: 61 ALLDVEDPIREAYTLEVSSPGIDRPLTRLKDFERFAGFEARLESRMAIDGRKRFKGMLKG 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS 182 + ++ E+ + + FD++L A+L++TD+L+RAS Sbjct: 121 VEDGLVCIDTEQGAAR--------LEFDNILRAKLVLTDDLIRAS 157 >gi|84514879|ref|ZP_01002242.1| hypothetical protein SKA53_11683 [Loktanella vestfoldensis SKA53] gi|84511038|gb|EAQ07492.1| hypothetical protein SKA53_11683 [Loktanella vestfoldensis SKA53] Length = 191 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 60/159 (37%), Positives = 89/159 (55%), Gaps = 8/159 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 I+ +I PVIE+M F V++ L+ K LQI V+R DG + + C ++S AIS +LDVE+ Sbjct: 14 IAEIITPVIEDMGFEVVRVRLMTGKESTLQIMVQRPDGTIEVDQCAQISTAISAVLDVED 73 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I Y LEVSSPGIDRP+ R DF +W G E +++ G++ G Sbjct: 74 PIVDVYTLEVSSPGIDRPLTRLKDFDQWKGFEAKIETEELIDGRRRFKGELAGIDGDEVL 133 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 + D++E I + F L A+L++TD+L+R L Sbjct: 134 I--------DIDEGTIGLKFAWLSDAKLVLTDDLIRDVL 164 >gi|332559636|ref|ZP_08413958.1| ribosome maturation protein RimP [Rhodobacter sphaeroides WS8N] gi|332277348|gb|EGJ22663.1| ribosome maturation protein RimP [Rhodobacter sphaeroides WS8N] Length = 204 Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 58/155 (37%), Positives = 89/155 (57%), Gaps = 3/155 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ ++ PVIE M F V++ L+ K LQI +R DG + + +C E+S A+S LDVE+ Sbjct: 14 LADIVTPVIEGMGFELVRLRLMSGKTRTLQIMADRPDGGIVVDECAEISTAVSAALDVED 73 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 IE +Y LEVSSPGIDRP+ R DF W G+ E +++ G++ GT Sbjct: 74 PIEENYTLEVSSPGIDRPLTRLKDFDVWTGYEARIETTELIDGRRRFKGELAGTEGDEVL 133 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIVTDELL 179 + E + + + I + FD L A+LI+T+EL+ Sbjct: 134 ITIEDGRD---SYVTIGLKFDWLSDAKLILTEELI 165 >gi|144897847|emb|CAM74711.1| protein conserved in bacteria [Magnetospirillum gryphiswaldense MSR-1] Length = 171 Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 11/165 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDG-NMTLRDCEELSQAIS 77 M L + ++ P +E M + V++ + LQ+ ER DG NMT+ DC ++S+++S Sbjct: 1 MDLQQRLEALFAPTLEAMGYEMVRVMFQGRSHPTLQVMAERKDGRNMTVDDCADISRSLS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I+ Y LEVSSPGIDRP+ R DF+ W G V E ++ +++ GK++G Sbjct: 61 ALLDVEDPIQSAYALEVSSPGIDRPLTRAKDFITWAGFEVKLEALVGVDGRKRFRGKLLG 120 Query: 138 TSETGFFLEKEK-RGEKDMNELQIAISFDSLLSARLIVTDELLRA 181 LE E R D E+ + ++ L SA+L++TDEL+ A Sbjct: 121 -------LEGEAVRLFADGAEVSVPLT--DLKSAKLVLTDELIAA 156 >gi|126734453|ref|ZP_01750200.1| hypothetical protein RCCS2_09839 [Roseobacter sp. CCS2] gi|126717319|gb|EBA14183.1| hypothetical protein RCCS2_09839 [Roseobacter sp. CCS2] Length = 192 Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 59/161 (36%), Positives = 90/161 (55%), Gaps = 8/161 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 I+ +I PV+E+M F V++ L+ K +LQ+ V+R DG + + +C ++S A+S ILDVE+ Sbjct: 15 IAEIITPVVEDMGFEVVRVRLMTGKESILQVMVQRPDGQIEVDECGQVSTALSAILDVED 74 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I Y LEVSSPGIDRP+ R DF +W G E +++ G + GT Sbjct: 75 PILDVYTLEVSSPGIDRPLTRMKDFDQWEGFEAKIETDELIDGRRRFKGPLAGTEGDEVL 134 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 + + E I + F+ L A+L++TDEL+R L Sbjct: 135 IT--------IAEGTIGLKFEWLSDAKLVLTDELIRDVLRG 167 >gi|99082749|ref|YP_614903.1| hypothetical protein TM1040_2909 [Ruegeria sp. TM1040] gi|122397499|sp|Q1GCH5|RIMP_SILST RecName: Full=Ribosome maturation factor rimP gi|99039029|gb|ABF65641.1| protein of unknown function DUF150 [Ruegeria sp. TM1040] Length = 203 Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 57/159 (35%), Positives = 90/159 (56%), Gaps = 4/159 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I PVIE++ + V+I L+ K LQI +R DG + + DC +S A+S LDVE+ Sbjct: 15 LAEIITPVIEDLGYELVRIRLMSGKTTTLQIMADRPDGGIEVDDCAAISNAVSATLDVED 74 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I Y LEVSSPGIDRP+ R DF + G+ E +++ G++ G + Sbjct: 75 PILDAYTLEVSSPGIDRPLTRLKDFDMFEGYEAKLETADLIDGRRRFKGELAGIEDDEVL 134 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 + E+ GE + I + FD L A+L++TD+L++ L Sbjct: 135 INIEEHGET----VTIGLKFDWLSDAKLVLTDDLIKEML 169 >gi|259417818|ref|ZP_05741737.1| hypothetical protein SCH4B_3234 [Silicibacter sp. TrichCH4B] gi|259346724|gb|EEW58538.1| hypothetical protein SCH4B_3234 [Silicibacter sp. TrichCH4B] Length = 244 Score = 104 bits (260), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 57/159 (35%), Positives = 90/159 (56%), Gaps = 4/159 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I PVIE++ + V+I L+ K LQI +R DG + + DC +S A+S LDVE+ Sbjct: 56 LAEIITPVIEDLGYELVRIRLMSGKATTLQIMADRPDGGIEVDDCAAISNAVSATLDVED 115 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I Y LEVSSPGIDRP+ R DF + G+ E +++ G++ G + Sbjct: 116 PILDAYTLEVSSPGIDRPLTRLKDFDMFEGYEAKLETADLIDGRRRFKGELAGIEDDEVL 175 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 + E+ GE + I + FD L A+L++TD+L++ L Sbjct: 176 INIEEHGET----VTIGLKFDWLSDAKLVLTDDLIKEML 210 >gi|163796765|ref|ZP_02190723.1| hypothetical protein BAL199_13523 [alpha proteobacterium BAL199] gi|159178019|gb|EDP62566.1| hypothetical protein BAL199_13523 [alpha proteobacterium BAL199] Length = 179 Score = 104 bits (260), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 60/159 (37%), Positives = 93/159 (58%), Gaps = 7/159 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-MTLRDCEELSQAISPILDVE 83 I S+I P IE M + V++ + + LQI ER DG+ M + DC E+S++IS ILDVE Sbjct: 14 IESIIGPSIEAMGYALVRVMITGGRRPTLQIMAERADGSGMNVDDCAEISRSISAILDVE 73 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I G Y LEVSSPGIDRP+ R DF R+ G ++ +++ G+++G + Sbjct: 74 DPITGEYTLEVSSPGIDRPLTRLDDFRRFAGFEARIDMAELIEGRKRFGGRLIGVDDADR 133 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS 182 L + G ++ A+ F+ + A+L++TDEL+ AS Sbjct: 134 VLLETAPGVRE------ALPFEGIARAKLVLTDELVAAS 166 >gi|114329059|ref|YP_746216.1| hypothetical protein GbCGDNIH1_2395 [Granulibacter bethesdensis CGDNIH1] gi|122325995|sp|Q0BPF9|RIMP_GRABC RecName: Full=Ribosome maturation factor rimP gi|114317233|gb|ABI63293.1| hypothetical cytosolic protein [Granulibacter bethesdensis CGDNIH1] Length = 178 Score = 104 bits (259), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 98/165 (59%), Gaps = 9/165 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMT-LRDCEELSQAISPILDVE 83 I+ +I P + +M F V++++L + +QI +R DG++ + DCE +S A +LDVE Sbjct: 12 IAGLIAPGLADMGFELVRVAVLGREQPTVQIMADRADGSLIGIDDCEAISHAAGALLDVE 71 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI-VLSSGDKQKLIGKIMGTSETG 142 ++I+ + LEVSS GIDRP+ R D++R+ GH+ E+ + G +++ G ++G ET Sbjct: 72 DVIQSTWNLEVSSAGIDRPLTRVKDWVRFAGHLAKVEMSIPGPGGRRRFSGTVLGADETA 131 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYG 187 L + GE ++++ D L A+L++TD L+ A+ + G Sbjct: 132 ARLRLDD-GE------EVSLPMDGLKKAKLVLTDALIDATAQDAG 169 >gi|23016101|ref|ZP_00055861.1| COG0779: Uncharacterized protein conserved in bacteria [Magnetospirillum magnetotacticum MS-1] Length = 165 Score = 104 bits (259), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 58/169 (34%), Positives = 95/169 (56%), Gaps = 9/169 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDG-NMTLRDCEELSQAIS 77 M L + ++I P ++ M + V++ L ++ L LQI +R DG M + DC ++S+++S Sbjct: 1 MDLQSRLEALIAPSLDAMGYELVRVQLQGKQRLTLQIMADRKDGVMMAVDDCADISRSVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I Y LEVSSPGIDRP+ R DF W G E +++ GK++G Sbjct: 61 ALLDVEDPISAAYTLEVSSPGIDRPLTRAKDFAAWAGFEAKMESCQPIDGRKRFRGKLLG 120 Query: 138 TSETGFFLE-KEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 ETG + + GE ++I + A+L++TDEL+ A++ + Sbjct: 121 LDETGAHVRLAVETGE-------VSIPLADVRGAKLVLTDELIAATVKD 162 >gi|149912924|ref|ZP_01901458.1| hypothetical protein RAZWK3B_03010 [Roseobacter sp. AzwK-3b] gi|149813330|gb|EDM73156.1| hypothetical protein RAZWK3B_03010 [Roseobacter sp. AzwK-3b] Length = 190 Score = 104 bits (259), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 56/160 (35%), Positives = 90/160 (56%), Gaps = 8/160 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I PVIE+M F V++ L+ K LLQI ER +G + + DC ++S A+S +LDVE+ Sbjct: 15 LAEIITPVIEDMGFELVRVRLMGGKTHLLQIMAERPEGGIEVDDCAKISNAVSAVLDVED 74 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 + Y LEVSSPGIDRP+ R DF + G+ E +++ G + G + Sbjct: 75 PVTDPYTLEVSSPGIDRPLTRLKDFADFEGYEAKIETSELIDGRKRFKGVLAGVEDDEVL 134 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLN 184 + ++ E + + FD L A+L++TDEL++ L Sbjct: 135 I--------NIEEGTVGLKFDWLSDAKLVLTDELIKEMLK 166 >gi|310817129|ref|YP_003965093.1| Ribosome maturation factor rimP [Ketogulonicigenium vulgare Y25] gi|308755864|gb|ADO43793.1| Ribosome maturation factor rimP [Ketogulonicigenium vulgare Y25] Length = 218 Score = 104 bits (259), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 62/179 (34%), Positives = 96/179 (53%), Gaps = 16/179 (8%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP------ 78 ++ ++QPVIE+M F V+I ++ K LQI ++ DG + + DC +S A+S Sbjct: 14 VAEIVQPVIEDMGFELVRIRVMTGKETTLQIMAQKPDGTIEVDDCAAISTAVSAGLDPPP 73 Query: 79 -----ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 +LDVE+ I +Y LEVSSPGIDRP+ R DF W+G+ E +++ G Sbjct: 74 PAVSAVLDVEDPIVENYTLEVSSPGIDRPLTRLKDFDLWDGYTAKIETEELIDGRRRFKG 133 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 ++ GT +E + E + I + F+ L A+L++TDEL+R L AGL Sbjct: 134 ELRGTEGDEILIELDDAAEP----VTIGLKFEWLSDAKLVLTDELIRDVLRGRKD-AGL 187 >gi|163742657|ref|ZP_02150043.1| hypothetical protein RG210_07209 [Phaeobacter gallaeciensis 2.10] gi|161384242|gb|EDQ08625.1| hypothetical protein RG210_07209 [Phaeobacter gallaeciensis 2.10] Length = 196 Score = 103 bits (258), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 92/168 (54%), Gaps = 4/168 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I PVIE++ F V+I L+ K LQI ++ DG + + C E+S A+S LDVE+ Sbjct: 15 LAEIITPVIEDLGFELVRIRLMSGKTTTLQIMADKPDGGIEVDGCAEISNAVSATLDVED 74 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I Y LEVSSPGIDRP+ R DF + G+ E +++ G++ G + Sbjct: 75 PILDSYALEVSSPGIDRPLTRLKDFEMFEGYEAKIETSELIDGRRRFKGELAGVEDDEVL 134 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + E+ GE + I + FD L A+L++TD+L++ L + L Sbjct: 135 INIEEHGET----ITIGLKFDWLSDAKLVLTDDLIKEMLRQRKAAGTL 178 >gi|89052532|ref|YP_507983.1| hypothetical protein Jann_0041 [Jannaschia sp. CCS1] gi|122499897|sp|Q28WF4|RIMP_JANSC RecName: Full=Ribosome maturation factor rimP gi|88862081|gb|ABD52958.1| protein of unknown function DUF150 [Jannaschia sp. CCS1] Length = 194 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 94/168 (55%), Gaps = 5/168 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ ++ P IE + F V+I ++ K LQI ER DG + + +C ++S AIS +LDVE+ Sbjct: 14 MAEIVTPSIEALGFEVVRIRVMGGKTNTLQIMAERPDGGIDVDECAQISNAISVLLDVED 73 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 +E Y LEVSSPGIDRP+ R DF + G+ E G +++ G + G + Sbjct: 74 PLEDAYALEVSSPGIDRPLTRLKDFETFEGYEAKLETTEMIGGQRRFKGVLAGVEDDEVL 133 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + E+ E + + ++FD L A+L++TDEL++ L AGL Sbjct: 134 VNLEQGSET----VTVGLNFDWLSDAKLVLTDELIKEMLKQRKD-AGL 176 >gi|126724628|ref|ZP_01740471.1| hypothetical protein RB2150_12371 [Rhodobacterales bacterium HTCC2150] gi|126705792|gb|EBA04882.1| hypothetical protein RB2150_12371 [Rhodobacterales bacterium HTCC2150] Length = 228 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 57/161 (35%), Positives = 93/161 (57%), Gaps = 8/161 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 +++++ PVIE++ V++ L+ K +LQI VE+ +G + + DC ++S A+S LDVE+ Sbjct: 52 MANIVTPVIEDLGCELVRVRLMTGKENILQIMVEKPEGGIEVDDCAKVSTAVSATLDVED 111 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I Y LEVSSPGIDRP+ R DF W+G+ E +++ G++ GT + Sbjct: 112 PILDAYNLEVSSPGIDRPLTRLKDFDMWDGYEAKIETSELIDGRRRFKGQLAGTQDDEVL 171 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 + E E I + F+ L A+L++TDEL+R L + Sbjct: 172 ITIE--------EGTIGLKFEWLSDAKLVLTDELIRDVLRS 204 >gi|163737948|ref|ZP_02145364.1| hypothetical protein RGBS107_06039 [Phaeobacter gallaeciensis BS107] gi|161388564|gb|EDQ12917.1| hypothetical protein RGBS107_06039 [Phaeobacter gallaeciensis BS107] Length = 196 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 4/168 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I PVIE++ F V+I L+ K LQI ++ DG + + C E+S A+S LDVE+ Sbjct: 15 LAEIITPVIEDLGFELVRIRLMSGKTTTLQIMADKPDGGIEVDGCAEISNAVSATLDVED 74 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I Y LEVSSPGIDRP+ R DF + G+ E +++ G++ G Sbjct: 75 PILDSYALEVSSPGIDRPLTRLKDFEMFEGYEAKIETSELIDGRRRFKGELAGVEGDEVL 134 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + E+ GE + I + FD L A+L++TD+L++ L + L Sbjct: 135 INIEEHGET----ITIGLKFDWLSDAKLVLTDDLIKEMLRQRKAAGTL 178 >gi|163745073|ref|ZP_02152433.1| hypothetical protein OIHEL45_05780 [Oceanibulbus indolifex HEL-45] gi|161381891|gb|EDQ06300.1| hypothetical protein OIHEL45_05780 [Oceanibulbus indolifex HEL-45] Length = 192 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 93/161 (57%), Gaps = 8/161 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I PVIE+M F V++ L+ K+ +LQ+ +R DG + + +C ++SQAI +LDVE+ Sbjct: 15 LAEIITPVIEDMGFELVRVRLMSGKSTILQVMADRPDGGIEVDECAKISQAIGAVLDVED 74 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I Y LEVSSPGIDRP+ R DF + G+ E +++ G++ G E G Sbjct: 75 PILDEYALEVSSPGIDRPLTRLKDFDAFEGYEAKIETTELIDGRRRFKGELAGV-EGGEV 133 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 L ++ E I + FD L A+L++TD+L++ L Sbjct: 134 L-------INVEEGTIGLQFDWLSDAKLLLTDDLIKEMLRQ 167 >gi|154254056|ref|YP_001414880.1| hypothetical protein Plav_3625 [Parvibaculum lavamentivorans DS-1] gi|259586173|sp|A7HZ90|RIMP_PARL1 RecName: Full=Ribosome maturation factor rimP gi|154158006|gb|ABS65223.1| protein of unknown function DUF150 [Parvibaculum lavamentivorans DS-1] Length = 207 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 59/170 (34%), Positives = 92/170 (54%), Gaps = 4/170 (2%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 G+A + ++ E F V++ + LQI ER DG+MT+ DC ELS+ +S + Sbjct: 29 GVARRVFEQLRAPAEGAGFEIVRVRFGVQDGQTLQIMAERPDGSMTVEDCAELSRMLSAL 88 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I G Y LE+SS GIDRP+ R DF RW+G V + +++ G + G Sbjct: 89 LDVEDPIPGEYHLEISSAGIDRPLTRPKDFERWSGFEVKVGLSEPLSGRKRFRGILQGVE 148 Query: 140 ETGFFLEKEKRGEKDMNELQI-AISFDSLLSARLIVTDELLRASLNNYGS 188 + +E + G +E Q+ + F L A+L+++D+L+R SL G Sbjct: 149 DDEVLVECDIEG---FSEPQVLGLPFRQLSEAKLVMSDDLIRESLKRQGP 195 >gi|159046100|ref|YP_001534894.1| hypothetical protein Dshi_3560 [Dinoroseobacter shibae DFL 12] gi|189040162|sp|A8LQ53|RIMP_DINSH RecName: Full=Ribosome maturation factor rimP gi|157913860|gb|ABV95293.1| protein of unknown function DUF150 [Dinoroseobacter shibae DFL 12] Length = 196 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 90/161 (55%), Gaps = 8/161 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 I++++ PVIE++ + V++ ++ K+ LQI E+ +G + + DC +S +S LDVE+ Sbjct: 14 IAALVTPVIEDLGYELVRLRVMSGKSPTLQIMAEKPEGGIEVDDCARISTEVSATLDVED 73 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 IE +Y LEVSSPGIDRP+ R DF W G+ E +++ G + GT Sbjct: 74 PIEDNYTLEVSSPGIDRPLTRLKDFDTWVGYEAKIETTELIEGRRRFKGALAGTEGDEVL 133 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 +E + E I + F+ L A+L++TD+L+R L Sbjct: 134 IE--------IEEGTIGLKFEWLSDAKLVLTDDLIRDVLKG 166 >gi|260576185|ref|ZP_05844178.1| protein of unknown function DUF150 [Rhodobacter sp. SW2] gi|259021665|gb|EEW24968.1| protein of unknown function DUF150 [Rhodobacter sp. SW2] Length = 199 Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 87/161 (54%), Gaps = 8/161 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ ++ P IE + F V+I L+ K LQI ER DG + + +C +S A+S ILDVE+ Sbjct: 14 LAEIVTPAIEGLGFELVRIRLMGGKVRTLQIMAERPDGGIVVDECAAISTAVSAILDVED 73 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 +E +Y LEVSSPGIDRP+ R DF W G+ E +++ G++ G Sbjct: 74 PVEENYILEVSSPGIDRPLTRLKDFDTWQGYEARIETTELIDGRRRFKGELRGIQGDEVL 133 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 +E + E I + FD L A+L++TDEL+ L Sbjct: 134 IE--------IEEGIIGLQFDWLSDAKLVLTDELIAEMLRQ 166 >gi|119385318|ref|YP_916374.1| hypothetical protein Pden_2591 [Paracoccus denitrificans PD1222] gi|259586172|sp|A1B584|RIMP_PARDP RecName: Full=Ribosome maturation factor rimP gi|119375085|gb|ABL70678.1| protein of unknown function DUF150 [Paracoccus denitrificans PD1222] Length = 206 Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 61/159 (38%), Positives = 90/159 (56%), Gaps = 8/159 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I PVIE++ F V+I L K LQI +R +G + + DC ++S A+S ILDVE+ Sbjct: 14 LAEIISPVIEDLGFELVRIRLQGGKTATLQIMADRPEGGINVDDCADISTAVSAILDVED 73 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT--SETG 142 +E Y LEVSSPGIDRP+ R DF + G+ E +++ G + G E G Sbjct: 74 PLEDAYHLEVSSPGIDRPLTRLKDFETFEGYEARLETNQPIDGRKRFKGVLAGVEKGEGG 133 Query: 143 --FFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELL 179 L E+ GE I ++FD L A+L++TDEL+ Sbjct: 134 DEVLLNIEEGGETQT----IGLNFDWLSDAKLVLTDELI 168 >gi|126728007|ref|ZP_01743823.1| hypothetical protein SSE37_18492 [Sagittula stellata E-37] gi|126710972|gb|EBA10022.1| hypothetical protein SSE37_18492 [Sagittula stellata E-37] Length = 189 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 58/166 (34%), Positives = 91/166 (54%), Gaps = 8/166 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ ++ PVIE+M F V++ L LLQI ER +G + + +C E+S A+S +LDVE+ Sbjct: 14 LAEIVAPVIEDMGFELVRLRLQSGNTPLLQIMAERPEGGIEVDECAEISTAVSAVLDVED 73 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I Y LEVSSPGIDRP+ R DF + G+ E +++ G + G + Sbjct: 74 PIVEAYTLEVSSPGIDRPLTRLKDFDTYEGYEARLETTDLIEGRKRFRGILAGVEGSEVL 133 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 + +++E I + FD L A+L++TDEL+R L + A Sbjct: 134 I--------NVDEGTIGLQFDWLADAKLVMTDELVREMLKARKTAA 171 >gi|86136806|ref|ZP_01055384.1| hypothetical protein MED193_14067 [Roseobacter sp. MED193] gi|85826130|gb|EAQ46327.1| hypothetical protein MED193_14067 [Roseobacter sp. MED193] Length = 196 Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 93/168 (55%), Gaps = 4/168 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ ++ PVIE++ + V+I L+ K LQI ++ +G + + DC +S A+S LDVE+ Sbjct: 15 LAEILIPVIEDLGYELVRIRLMSGKTTTLQIMADKPEGGIEVDDCAVVSSAVSATLDVED 74 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I Y LEVSSPGIDRP+ R DF + G+ E G +++ G++ GT E Sbjct: 75 PILDAYTLEVSSPGIDRPLTRLKDFDMFEGYEAKLETDELVGGRRRFKGELAGTEEDEVL 134 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + E +G+ + I + FD L A+L++TD+L+ L + L Sbjct: 135 INIEDQGKT----VTIGLKFDWLSDAKLVLTDDLITEMLRQRKAAGTL 178 >gi|260429224|ref|ZP_05783201.1| hypothetical protein CSE45_3569 [Citreicella sp. SE45] gi|260419847|gb|EEX13100.1| hypothetical protein CSE45_3569 [Citreicella sp. SE45] Length = 198 Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 59/160 (36%), Positives = 88/160 (55%), Gaps = 4/160 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ ++ PVIE+M F V+I L+ K LQI ER +G + + +C ++S A+S +LDVE+ Sbjct: 14 LAEIVAPVIEDMGFELVRIRLMGGKTATLQIMAERPEGGIEIDECGDISTAVSAVLDVED 73 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I Y LEV SPGIDRP+ R DF + G+ + +++ G + G Sbjct: 74 PILDSYVLEVGSPGIDRPLTRLKDFETFEGYDAKIQTDELIDGRKRWQGVLAGVEGGEVL 133 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLN 184 L E+ GE I + FD L A+LI+TDEL+R L Sbjct: 134 LNIEENGETQT----IGLQFDWLSDAKLILTDELMREMLR 169 >gi|114762089|ref|ZP_01441557.1| hypothetical protein 1100011001331_R2601_14160 [Pelagibaca bermudensis HTCC2601] gi|114545113|gb|EAU48116.1| hypothetical protein R2601_14160 [Roseovarius sp. HTCC2601] Length = 195 Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 62/162 (38%), Positives = 93/162 (57%), Gaps = 7/162 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ ++ PVIE++ F V++ L+ K LQI ER +G + + +C ++S A+S +LDVE+ Sbjct: 14 LAEIVTPVIEDLGFELVRLRLMSGKTATLQIMAERPEGGIEVDECADISTAVSAVLDVED 73 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT--SETG 142 I Y LEVSSPGIDRP+ R DF + G+ E +++ G + G SE Sbjct: 74 PIIDAYALEVSSPGIDRPLTRLKDFDTYEGYEAKIETQEMIDGRKRWRGVLAGIEGSEVL 133 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLN 184 F +E E GE E I + FD L A+LI+TD+L+R L Sbjct: 134 FNIEGEG-GE----EQTIGLQFDWLSDAKLILTDDLIRDMLR 170 >gi|304320432|ref|YP_003854075.1| hypothetical protein PB2503_04292 [Parvularcula bermudensis HTCC2503] gi|303299334|gb|ADM08933.1| hypothetical protein PB2503_04292 [Parvularcula bermudensis HTCC2503] Length = 174 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 83/161 (51%), Gaps = 6/161 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ ++ P+IE + +++ L K LQI ER DG MT DC LS+A+S +L+ + Sbjct: 8 LTDLLLPIIETEGYELIRLRLTGAKQQTLQIMAERPDGTMTAEDCARLSRAVSAVLEEAD 67 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I G Y LEVSSPGIDRP+ R D+ RW G V E+ +++ G + G Sbjct: 68 PISGEYVLEVSSPGIDRPLTRLKDYARWEGFVAKIELSQPVEGQKRYRGTLAGVENDDVC 127 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 + + D E I F + +L++TDEL+ SL Sbjct: 128 I------DLDGEEETALIPFSIIAGGKLVMTDELIAESLRR 162 >gi|56694992|ref|YP_165338.1| hypothetical protein SPO0064 [Ruegeria pomeroyi DSS-3] gi|81350793|sp|Q5LWL1|RIMP_SILPO RecName: Full=Ribosome maturation factor rimP gi|56676729|gb|AAV93395.1| conserved hypothetical protein [Ruegeria pomeroyi DSS-3] Length = 208 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 89/159 (55%), Gaps = 4/159 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ ++ PVI ++ + V+I L+ K+ LQI ++ DG + + DC +S A+S LDVE+ Sbjct: 15 LAEIVSPVIADLGYELVRIRLMSGKSTTLQIMADKPDGGIEVDDCAAISNAVSATLDVED 74 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I Y LEVSSPGIDRP+ R DF + G+ E +++ G++ G Sbjct: 75 PILDAYTLEVSSPGIDRPLTRLKDFEMFEGYEAKIETTEMIDGRRRFRGELAGIEGNEVL 134 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 + ++ GE + I + FD L A+L++TD+L++ L Sbjct: 135 INLDQNGET----VTIGLEFDWLSDAKLVLTDDLIKEML 169 >gi|114800120|ref|YP_758845.1| hypothetical protein HNE_0111 [Hyphomonas neptunium ATCC 15444] gi|123129251|sp|Q0C5Z8|RIMP_HYPNA RecName: Full=Ribosome maturation factor rimP gi|114740294|gb|ABI78419.1| conserved hypothetical protein [Hyphomonas neptunium ATCC 15444] Length = 199 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 54/157 (34%), Positives = 84/157 (53%), Gaps = 8/157 (5%) Query: 27 SVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMT-LRDCEELSQAISPILDVENI 85 S++QPV E + V++ + + LQI ER G T + DC LS+ +SP+L+ + Sbjct: 13 SLVQPVAEGLGMEIVRLRVQGGRRPHLQIMAERAGGAPTGIEDCARLSRGMSPVLEAADP 72 Query: 86 IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFL 145 I Y LEVS+PGIDRP+ R DF RW GH V E+ +++ G I G G + Sbjct: 73 ISEAYTLEVSTPGIDRPLTRPGDFARWIGHAVRIELARPIDGRRRFTGTITGEDNDGAHI 132 Query: 146 EKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS 182 E + +E ++ + + A L++TDEL+ A+ Sbjct: 133 ELD-------DETKLVAAVHEMSRASLVLTDELIEAA 162 >gi|254462851|ref|ZP_05076267.1| hypothetical protein RB2083_3442 [Rhodobacterales bacterium HTCC2083] gi|206679440|gb|EDZ43927.1| hypothetical protein RB2083_3442 [Rhodobacteraceae bacterium HTCC2083] Length = 193 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 54/155 (34%), Positives = 84/155 (54%), Gaps = 8/155 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I PVIE++ F V++ L+ K LQI ER G + + C E+S AI LDVE+ Sbjct: 15 LAGIITPVIEDLGFELVRVRLMSGKTTTLQIMAERPTGGIEVDQCAEISTAIGATLDVED 74 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I Y LEVSSPGIDRP+ R DF + G+ E +++ G++ G Sbjct: 75 PIIDEYTLEVSSPGIDRPLTRLKDFATFEGYEAKIETTELIDGRRRFKGQLAGVEGNDVL 134 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIVTDELL 179 + ++ E + ++FD L A+L++TDEL+ Sbjct: 135 I--------NIEEGTVGLNFDWLSDAKLVLTDELI 161 >gi|260431716|ref|ZP_05785687.1| hypothetical protein SL1157_0822 [Silicibacter lacuscaerulensis ITI-1157] gi|260415544|gb|EEX08803.1| hypothetical protein SL1157_0822 [Silicibacter lacuscaerulensis ITI-1157] Length = 196 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 88/168 (52%), Gaps = 4/168 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I PVIE++ + V+I L+ K LQI ++ DG + + DC E+S A+S LDVE+ Sbjct: 15 LAEIITPVIEDLGYELVRIRLMSGKQTTLQIMADKPDGGIEVDDCAEISNAVSATLDVED 74 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I Y LEVSSPGIDRP+ R DF + G+ E +++ G++ G Sbjct: 75 PILDAYTLEVSSPGIDRPLTRLKDFEMFEGYEAKLETTELIDGRRRFKGELAGVEGDEVL 134 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + E + I + FD L A+L++TD+L++ L L Sbjct: 135 INIPNGDET----VTIGLQFDWLSDAKLVLTDDLIKEMLRQRKDAGAL 178 >gi|254510275|ref|ZP_05122342.1| conserved hypothetical protein [Rhodobacteraceae bacterium KLH11] gi|221533986|gb|EEE36974.1| conserved hypothetical protein [Rhodobacteraceae bacterium KLH11] Length = 232 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 89/168 (52%), Gaps = 4/168 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I PVIE++ + V+I L+ K +QI ++ DG + + DC E+S A+S LDVE+ Sbjct: 51 LAEIITPVIEDLGYELVRIRLMSGKTTTMQIMADKPDGGIEVDDCAEISNAVSATLDVED 110 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I Y LEVSSPGIDRP+ R DF + G+ E +++ G++ G Sbjct: 111 PILDAYTLEVSSPGIDRPLTRLKDFETFEGYEAKIETAELIDGRRRFKGELAGIEGDEVL 170 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + + E + I + FD L A+L++TD+L++ L L Sbjct: 171 INIPEGDET----ITIGLQFDWLSDAKLVLTDDLIKEMLRQRKDAGAL 214 >gi|84500728|ref|ZP_00998977.1| hypothetical protein OB2597_12236 [Oceanicola batsensis HTCC2597] gi|84391681|gb|EAQ04013.1| hypothetical protein OB2597_12236 [Oceanicola batsensis HTCC2597] Length = 189 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 56/160 (35%), Positives = 88/160 (55%), Gaps = 8/160 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ ++ PVIE+M F V++ L+ + LQI ER G + + +C E+S A+S LDVE+ Sbjct: 13 LAEIVTPVIEDMGFELVRLRLMGGQTKTLQIMAERPGGGIEVDECAEISNAVSATLDVED 72 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 + Y LEVSSPGIDRP+ R DF + G+ E +++ G + G E G Sbjct: 73 PVSDAYTLEVSSPGIDRPLTRLKDFDTFQGYEAKIETTELIDGRKRFKGVLAGV-EGGEI 131 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLN 184 L ++ E + + FD L A+L++TDEL++ L Sbjct: 132 L-------INIEEGTVGLHFDWLADAKLVLTDELIKEMLK 164 >gi|83945004|ref|ZP_00957370.1| hypothetical protein OA2633_10254 [Oceanicaulis alexandrii HTCC2633] gi|83851786|gb|EAP89641.1| hypothetical protein OA2633_10254 [Oceanicaulis alexandrii HTCC2633] Length = 178 Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 86/167 (51%), Gaps = 6/167 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 I + +P+ E + V++ ++ K +QI ER DG M + DC LS+A+S + D + Sbjct: 11 ILEIAEPLAETLGLEIVRVRVMGGKKTTVQIMAERHDGTMVVEDCARLSRALSEVFDEAD 70 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 + G Y LEVSSPGIDRP+ S F RW G E+ ++++ G + G + Sbjct: 71 PVSGEYDLEVSSPGIDRPLTALSHFERWEGFEAKIELDRLVENRKRFRGMLAGIEDDNVL 130 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAG 191 ++ GE D I F+ + A+L++TD L+ ASL G G Sbjct: 131 MDLA--GEDD----TAVIPFEWIADAKLVMTDALVEASLKARGPIEG 171 >gi|296533458|ref|ZP_06896040.1| protein of hypothetical function DUF150 [Roseomonas cervicalis ATCC 49957] gi|296266213|gb|EFH12256.1| protein of hypothetical function DUF150 [Roseomonas cervicalis ATCC 49957] Length = 195 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 76/131 (58%), Gaps = 1/131 (0%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMT-LRDCEELSQAISP 78 GL I++ IQP + M + V++ + ++ +Q+ +R DG + + DCE +S A+ Sbjct: 12 GLEARIAAAIQPTLTAMGYEIVRVQIHGKQTPTVQVMADRADGALIGVADCEAISHAVGA 71 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LDV++ G + LEVSSPGIDRP+ R D+LR+ GH+ E+ + +++ G I+G Sbjct: 72 VLDVDDPFSGEWNLEVSSPGIDRPLTRTKDWLRFTGHLAIAEMSIPFEGRRRFRGTILGA 131 Query: 139 SETGFFLEKEK 149 E L E+ Sbjct: 132 DEASVRLRLEE 142 >gi|167644003|ref|YP_001681666.1| hypothetical protein Caul_0030 [Caulobacter sp. K31] gi|259585739|sp|B0T164|RIMP_CAUSK RecName: Full=Ribosome maturation factor rimP gi|167346433|gb|ABZ69168.1| protein of unknown function DUF150 [Caulobacter sp. K31] Length = 199 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/179 (32%), Positives = 98/179 (54%), Gaps = 18/179 (10%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLL---EEKNLLLQIFVERDDGNMTLRDCEELSQ 74 D+GL ++ PV E + + V++ L+ E++ L QI ER DG+M + DC +LS+ Sbjct: 8 DIGLV----ELLDPVAESVGYEIVRLRLMGGAEQRRL--QIMAERPDGDMNVEDCAKLSR 61 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 AIS ILD + I G Y LEVSSPG+DRP+ R DF + G V E+ + +++ G+ Sbjct: 62 AISEILDAADPISGEYTLEVSSPGVDRPLTRLKDFETYAGLEVRIELDRVAEGRKRFKGE 121 Query: 135 IMGT--SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAG 191 + G + G LE E ++ + F+ ++ A+L++TD+L++ + G Sbjct: 122 LAGVEDGQVGLNLEGE-------DDTTVYFPFEWIVDAKLVLTDQLMKRGAEQRAARVG 173 >gi|83942069|ref|ZP_00954531.1| hypothetical protein EE36_07533 [Sulfitobacter sp. EE-36] gi|83953119|ref|ZP_00961841.1| hypothetical protein NAS141_12461 [Sulfitobacter sp. NAS-14.1] gi|83842087|gb|EAP81255.1| hypothetical protein NAS141_12461 [Sulfitobacter sp. NAS-14.1] gi|83847889|gb|EAP85764.1| hypothetical protein EE36_07533 [Sulfitobacter sp. EE-36] Length = 192 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 91/168 (54%), Gaps = 8/168 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I PVIE+M F V++ L+ K+ LQ+ +R DG + + + +SQ+IS ++DVE+ Sbjct: 15 MAEIITPVIEDMGFELVRVRLMSGKSTTLQVMADRPDGGIEVDELALISQSISAVMDVED 74 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I Y LEVSSPGIDRP+ R DF + G+ E +++ G++ G + Sbjct: 75 PILDEYTLEVSSPGIDRPLTRLKDFEMFEGYEAKIETGELIDGRRRFKGELAGVEDDEVL 134 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + E E I + FD L A+L++TD+L++ L + + Sbjct: 135 INVE--------EGTIGLKFDWLTDAKLVLTDDLIKEMLRQRKASGAI 174 >gi|85705697|ref|ZP_01036794.1| hypothetical protein ROS217_10367 [Roseovarius sp. 217] gi|85669687|gb|EAQ24551.1| hypothetical protein ROS217_10367 [Roseovarius sp. 217] Length = 191 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 88/161 (54%), Gaps = 8/161 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I PVIE++ + V++ L+ + LQI ++ DG + + DC +S A+S +LDVE+ Sbjct: 15 MAEIITPVIEDLGYELVRVRLMGGQYHTLQIMADKPDGGIEVDDCAVISTAVSAVLDVED 74 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 + Y LEVSSPGIDRP+ R DF + G+ E +++ G + G T Sbjct: 75 PLVEAYTLEVSSPGIDRPLTRLKDFEAFEGYEAKIETTELIDGRRRFKGVLAGVEGTEVL 134 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 + ++ E I + FD L A+L++TDEL++ L Sbjct: 135 I--------NVEEGTIGLEFDWLSDAKLVLTDELIKEMLRQ 167 >gi|114571579|ref|YP_758259.1| hypothetical protein Mmar10_3040 [Maricaulis maris MCS10] gi|122314890|sp|Q0AK72|RIMP_MARMM RecName: Full=Ribosome maturation factor rimP gi|114342041|gb|ABI67321.1| protein of unknown function DUF150 [Maricaulis maris MCS10] Length = 178 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 91/168 (54%), Gaps = 7/168 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-MTLRDCEELSQAISPILDVE 83 I ++ +PV E++ V++ ++ K LQI +R +G + + DC S+A+S + +VE Sbjct: 11 ILALAEPVAAELALEVVRVRIMSGKRPRLQIMADRTNGTGIEVEDCARFSRALSEVFEVE 70 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + + G Y LEVSSPGIDRP+ F RW G+ V E+ + +++ G + G + Sbjct: 71 DPVAGEYDLEVSSPGIDRPLTTLPHFERWEGNEVKIELDRLAEGRKRFRGILAGVEDGHV 130 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAG 191 L+ + GE D I FD ++ A+L++TD L+ A L G A Sbjct: 131 GLDMD--GEDDTT----MIPFDWIVEAKLVLTDALIEADLKARGRGAA 172 >gi|58040012|ref|YP_191976.1| hypothetical protein GOX1579 [Gluconobacter oxydans 621H] gi|81351770|sp|Q5FQM6|RIMP_GLUOX RecName: Full=Ribosome maturation factor rimP gi|58002426|gb|AAW61320.1| Hypothetical protein associated with nus operon [Gluconobacter oxydans 621H] Length = 203 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 90/164 (54%), Gaps = 8/164 (4%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNM-TLRDCEELSQAISP 78 GL I+ I P + ++ + V++S+L +QI +R +G++ ++ DCE++S A Sbjct: 17 GLEARIAERIAPTLADLGYELVRLSVLGRDTPTIQIMADRANGSLISVEDCEQISHAAGA 76 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 ILDV++ I G + LEVSS GIDRP+ R D+ R+ GH+ E+ + +++ G +MG Sbjct: 77 ILDVDDPIPGAWMLEVSSAGIDRPLTRAKDWERFAGHLAKAELDVPLNGRRRFSGTVMGA 136 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS 182 + + + + + + + ARL++TD L+ AS Sbjct: 137 RDGNAIIRLD-------DGTEAVLPLVDIRKARLVLTDALIEAS 173 >gi|148284845|ref|YP_001248935.1| hypothetical protein OTBS_1566 [Orientia tsutsugamushi str. Boryong] gi|254800562|sp|A5CEN4|RIMP_ORITB RecName: Full=Ribosome maturation factor rimP gi|146740284|emb|CAM80659.1| conserved hypothetical protein [Orientia tsutsugamushi str. Boryong] Length = 160 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 93/167 (55%), Gaps = 9/167 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVER-DDGNMTLRDCEELSQAISPI 79 L I +I P + + ++ + +S + K +L+I ++R D+ + + DC+ S+AIS + Sbjct: 2 LNDKIKELITPTAKTLGYKVINVSFIV-KPAILKIVIDRFDEKKVNVLDCQVFSKAISAV 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVENII G Y LEV S GI+R ++ DF+++ G+ + ++V + + +K IG I Sbjct: 61 LDVENIIPGKYFLEVESAGIERSLMDLEDFIKFLGYTIQVKLVAAINENKKYIGVISNIK 120 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNY 186 L + N+ IAI +D++ A+++ TDE+ R NY Sbjct: 121 GQEITLNLQ-------NDSTIAIDYDNIKVAKIVFTDEMFRQITKNY 160 >gi|83950735|ref|ZP_00959468.1| hypothetical protein ISM_06535 [Roseovarius nubinhibens ISM] gi|83838634|gb|EAP77930.1| hypothetical protein ISM_06535 [Roseovarius nubinhibens ISM] Length = 190 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 86/161 (53%), Gaps = 8/161 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ ++ PVIE++ F V++ L+ K LQI ER +G + + +C +S +S +LDVE+ Sbjct: 15 LAEIVTPVIEDLGFELVRLRLMGGKTDTLQIMAERPEGGIEVDECARISTEVSAVLDVED 74 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I Y LEVSSPGIDRP+ R DF + G+ E +++ G + G Sbjct: 75 PIIEAYTLEVSSPGIDRPLTRLKDFETFEGYEAKIETSELIDGRKRFKGVLAGVEGEEVL 134 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 + ++ E I + FD L A+L++TDEL++ L Sbjct: 135 I--------NVEEGTIGLQFDWLADAKLVLTDELIKEMLRQ 167 >gi|148259242|ref|YP_001233369.1| hypothetical protein Acry_0222 [Acidiphilium cryptum JF-5] gi|259585658|sp|A5FV18|RIMP_ACICJ RecName: Full=Ribosome maturation factor rimP gi|146400923|gb|ABQ29450.1| protein of unknown function DUF150 [Acidiphilium cryptum JF-5] Length = 201 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 98/165 (59%), Gaps = 9/165 (5%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVER-DDGNMTLRDCEELSQAISP 78 GL G I+ +I P +E + + V+++++ ++ +QI +R D ++L DCE +S +S Sbjct: 37 GLEGRIAELIAPGLESIGYELVRVAIMGKQTPTVQIMADRADQTPLSLDDCERISHLVSA 96 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI-VLSSGDKQKLIGKIMG 137 +LDV++ I + LEVSS GIDRP+ R D+ R+ GH+ ++ V ++ +++L G ++G Sbjct: 97 VLDVDDPISSAWTLEVSSAGIDRPLTRVKDWNRYAGHLARIDLDVPTASGRKRLTGTVLG 156 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS 182 E + R + D E + + + A+L++T+EL++A+ Sbjct: 157 ADEA------QARVKLDSGE-TVDLPHAHIRRAKLVLTEELIKAT 194 >gi|326402395|ref|YP_004282476.1| hypothetical protein ACMV_02470 [Acidiphilium multivorum AIU301] gi|325049256|dbj|BAJ79594.1| hypothetical protein ACMV_02470 [Acidiphilium multivorum AIU301] Length = 174 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 98/165 (59%), Gaps = 9/165 (5%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVER-DDGNMTLRDCEELSQAISP 78 GL G I+ +I P +E + + V+++++ ++ +QI +R D ++L DCE +S +S Sbjct: 10 GLEGRIAELIAPGLESIGYELVRVAIMGKQTPTVQIMADRADQTPLSLDDCERISHLVSA 69 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI-VLSSGDKQKLIGKIMG 137 +LDV++ I + LEVSS GIDRP+ R D+ R+ GH+ ++ V ++ +++L G ++G Sbjct: 70 VLDVDDPISSAWTLEVSSAGIDRPLTRVKDWNRYAGHLARIDLDVPTASGRKRLTGTVLG 129 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS 182 E + R + D E + + + A+L++T+EL++A+ Sbjct: 130 ADEA------QARVKLDSGE-TVDLPHAHIRRAKLVLTEELIKAT 167 >gi|149202948|ref|ZP_01879919.1| hypothetical protein RTM1035_19436 [Roseovarius sp. TM1035] gi|149143494|gb|EDM31530.1| hypothetical protein RTM1035_19436 [Roseovarius sp. TM1035] Length = 191 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 51/161 (31%), Positives = 88/161 (54%), Gaps = 8/161 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I PVIE++ + V++ L+ + LQI ++ +G + + DC +S A+S +LDVE+ Sbjct: 15 LAEIITPVIEDLGYELVRVRLMGGQYHTLQIMADKPEGGIEVDDCAAISTAVSAVLDVED 74 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 + Y LEVSSPGIDRP+ R DF + G+ E +++ G + G + Sbjct: 75 PLVEAYTLEVSSPGIDRPLTRLKDFEMFEGYEAKIETTELIDGRRRFKGVLAGVEGSEVL 134 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 + ++ E I + FD L A+L++TDEL++ L Sbjct: 135 I--------NVEEGTIGLEFDWLSDAKLVLTDELIKEMLRQ 167 >gi|189183524|ref|YP_001937309.1| hypothetical protein OTT_0617 [Orientia tsutsugamushi str. Ikeda] gi|254806539|sp|B3CR92|RIMP_ORITI RecName: Full=Ribosome maturation factor rimP gi|189180295|dbj|BAG40075.1| hypothetical protein OTT_0617 [Orientia tsutsugamushi str. Ikeda] Length = 160 Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 93/167 (55%), Gaps = 9/167 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVER-DDGNMTLRDCEELSQAISPI 79 L I +I P + + ++ + ++ + K +L+I ++R D+ + + DC+ S+AIS + Sbjct: 2 LNDKIKELITPTAKALGYKVINVNFVV-KPAILKIVIDRFDEKKVKVLDCQAFSKAISAV 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVENII G Y LEV S GI+R ++ DF+++ G+ + ++V + + +K IG I Sbjct: 61 LDVENIIPGKYFLEVESAGIERSLMDLEDFIKFLGYTIQVKLVAAINENKKYIGVISNIK 120 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNY 186 L + N+ IAI +D++ A+++ TDE+ R NY Sbjct: 121 GQEITLNLQ-------NDSTIAIDYDNIKVAKIVFTDEMFRQITKNY 160 >gi|254295402|ref|YP_003061425.1| hypothetical protein Hbal_3060 [Hirschia baltica ATCC 49814] gi|254043933|gb|ACT60728.1| protein of unknown function DUF150 [Hirschia baltica ATCC 49814] Length = 203 Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 53/155 (34%), Positives = 86/155 (55%), Gaps = 7/155 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 I +I+P + V++ ++ +LQI E+ DG M + DC +LS+AI P+LDVE+ Sbjct: 11 ILDIIEPEATSIGLEIVRVRMMGANTPILQIMAEKPDGTMDVEDCAKLSRAIGPVLDVED 70 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I Y LEVSSPGIDRP+ R+ DF W + V E+ + +++ G I T E Sbjct: 71 PIHSEYNLEVSSPGIDRPLTREGDFANWKTYEVRIELGIPIDGRRRFHGTI--TDEVNGI 128 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIVTDELL 179 + + KD ++ +I+I ++ A L++ D L+ Sbjct: 129 VSLDL---KDGSKAEISIV--DMVKASLVMNDRLI 158 >gi|294011602|ref|YP_003545062.1| hypothetical protein SJA_C1-16160 [Sphingobium japonicum UT26S] gi|292674932|dbj|BAI96450.1| conserved hypothetical protein [Sphingobium japonicum UT26S] Length = 196 Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 86/163 (52%), Gaps = 9/163 (5%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDG-NMTLRDCEELSQAISPIL 80 +++++I+P ++ + F V+I L + LQI ER + + + DC +S+ +S +L Sbjct: 27 AELTALIEPEVKALGFDLVRIKLFGSGDEYTLQIMAERPETKQLVIEDCAAISRRLSDVL 86 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D + IE YRLEVSSPGIDRP+ R +DFL W GH + ++ G + G Sbjct: 87 DEADPIEEAYRLEVSSPGIDRPLTRLTDFLEWAGHEAKIAATETVSGRKSFRGVLKGVEG 146 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 K G+ +AI F + A+LI+TD L+ AS+ Sbjct: 147 EDILFADAKAGD-------VAIPFALVGDAKLILTDALIAASM 182 >gi|307293341|ref|ZP_07573187.1| protein of unknown function DUF150 [Sphingobium chlorophenolicum L-1] gi|306881407|gb|EFN12623.1| protein of unknown function DUF150 [Sphingobium chlorophenolicum L-1] Length = 174 Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 87/167 (52%), Gaps = 9/167 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDG-NMTLRDCEELSQAI 76 M +++++I+P ++ + F V+I L + LQI ER + + + DC +S+ + Sbjct: 1 MADIAELTALIEPEVKALGFDLVRIKLFGSGDEYTLQIMAERPETKQLVIEDCATISRRL 60 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 S +LD + IE YRLEVSSPGIDRP+ R +DFL W GH + ++ G + Sbjct: 61 SDVLDEADPIEEAYRLEVSSPGIDRPLTRLTDFLEWTGHEAKIAATETVSGRKSFRGVLN 120 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 G K G+ +AI F + A+LI+TD L+ AS+ Sbjct: 121 GIEGEDILFTDAKAGD-------VAIPFALVGDAKLILTDALIAASM 160 >gi|209966174|ref|YP_002299089.1| hypothetical protein RC1_2909 [Rhodospirillum centenum SW] gi|259586184|sp|B6IVF3|RIMP_RHOCS RecName: Full=Ribosome maturation factor rimP gi|209959640|gb|ACJ00277.1| conserved hypothetical protein [Rhodospirillum centenum SW] Length = 252 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 46/114 (40%), Positives = 67/114 (58%), Gaps = 1/114 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-MTLRDCEELSQAISPILDVE 83 I +I+P +E M + V++ L + LQI ER DG MT+ DC ++S+A+S +LDVE Sbjct: 7 IGRIIEPSVEAMGYELVRVQLSGGQRPTLQIMAERSDGAAMTVEDCADISRAVSALLDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 + + G Y LEVSSPGIDRP+ R DF R+ G E +++ G + G Sbjct: 67 DPLPGAYTLEVSSPGIDRPLTRLKDFERFAGFEARLETKAPVDGRKRFRGFLAG 120 >gi|258545584|ref|ZP_05705818.1| BCR/YhbC family protein [Cardiobacterium hominis ATCC 15826] gi|258519284|gb|EEV88143.1| BCR/YhbC family protein [Cardiobacterium hominis ATCC 15826] Length = 157 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 71/119 (59%), Gaps = 1/119 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +++PV+E M F V + N +L+I+V+R +G + + E+++A++PILDVE Sbjct: 7 VTELLKPVVESMGFEWVGVEYHHNSVNAILRIYVDRPEGGIDMEGVVEVTEAVNPILDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 + I Y LEVSSPG+DRP+ +DF+R+ G + G +++ G I T ET Sbjct: 67 DPINAPYTLEVSSPGLDRPLFSFADFVRFTGETAKVHLHAPVGKRRRFEGVIESTDETA 125 >gi|319790653|ref|YP_004152286.1| protein of unknown function DUF150 [Thermovibrio ammonificans HB-1] gi|317115155|gb|ADU97645.1| protein of unknown function DUF150 [Thermovibrio ammonificans HB-1] Length = 162 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 82/149 (55%), Gaps = 7/149 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ P++EE F V + +E +L+I+ +R G +T+ DC+ +S+ I +LDVE Sbjct: 12 VKELLAPILEEGGFELVDVEFQKEPVGWVLRIYADRPQGGITISDCQWISERIGTLLDVE 71 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 ++I Y LEVSSPG+DRP+ + DF R G VV + +++ G ++ TSE G Sbjct: 72 DVIPHAYHLEVSSPGLDRPLKTQRDFERHRGVVVKIKTHEPMDNQRNFKGAVVSTSERGV 131 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + R + I +D++ SAR+ Sbjct: 132 TVHDVSRN------ADVEIPYDNIKSARV 154 >gi|95929629|ref|ZP_01312371.1| protein of unknown function DUF150 [Desulfuromonas acetoxidans DSM 684] gi|95134326|gb|EAT15983.1| protein of unknown function DUF150 [Desulfuromonas acetoxidans DSM 684] Length = 187 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 90/167 (53%), Gaps = 18/167 (10%) Query: 1 MESTHFLHS-KYEPRIFGDMGLAGDISS---------VIQPVIEEMSFRSVQISLLEE-K 49 M S F H + P +F + G D+S + +P++EE V I + Sbjct: 1 MRSELFAHFFLFYPFLFKEQGRCNDMSDEAVLNKVIELAEPILEEQGLELVDIEFFSQGS 60 Query: 50 NLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDF 109 LL++F+++ G + L DC + S+ +S ILDVE +IE YRLEVSSPGIDRP+ +++DF Sbjct: 61 EWLLRLFIDKP-GGVNLDDCADCSRELSLILDVEEVIEVAYRLEVSSPGIDRPLKKEADF 119 Query: 110 LRWNGHVVACEIV------LSSGDKQKLIGKIMGTSETGFFLEKEKR 150 R+ G +V + + L ++ IG+++G + F+E+ + Sbjct: 120 ERFKGEMVRAKTLQAIDPDLRGYQRKTFIGELLGLEDDVVFIEQNDK 166 >gi|160871632|ref|ZP_02061764.1| 15 kDa protein [Rickettsiella grylli] gi|159120431|gb|EDP45769.1| 15 kDa protein [Rickettsiella grylli] Length = 153 Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 88/150 (58%), Gaps = 10/150 (6%) Query: 25 ISSVIQPVIEEMSFR-SVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I + + P IE + + + L E + L+I+++ + G +TL DCE +S+ + +LDVE Sbjct: 8 IEARLSPTIEALGYELWACVYLREGQKNRLRIYIDSEKG-ITLSDCERVSRQVGALLDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 ++++GHY LEVSSPG+DRP++++ F R+ G+ + + +++K G + T +G Sbjct: 67 DLLQGHYHLEVSSPGLDRPLIKEDHFQRYVGYPIHVFLQSPIDNQRKFKGLLQSTRASGI 126 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L +E + + +++D++L A ++ Sbjct: 127 VLNREGK--------EFVLTWDNILHANVL 148 >gi|56551453|ref|YP_162292.1| hypothetical protein ZMO0557 [Zymomonas mobilis subsp. mobilis ZM4] gi|241761100|ref|ZP_04759189.1| protein of unknown function DUF150 [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752934|ref|YP_003225827.1| hypothetical protein Za10_0696 [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|81355359|sp|Q5NQ24|RIMP_ZYMMO RecName: Full=Ribosome maturation factor rimP gi|56543027|gb|AAV89181.1| protein of unknown function DUF150 [Zymomonas mobilis subsp. mobilis ZM4] gi|241374719|gb|EER64180.1| protein of unknown function DUF150 [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552297|gb|ACV75243.1| protein of unknown function DUF150 [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 184 Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 95/169 (56%), Gaps = 12/169 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDG-NMTLRDCEELSQAISPILDV 82 I+++++P ++ + V+I++ K + LQI ER D + L +CE LS+ +S I D Sbjct: 16 ITALVEPEVKALGLELVRIAMFGGKSDPTLQIMAERPDTRQIGLTECEALSRRLSEIFDE 75 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET- 141 ++ IE YRLEVSSPGIDRP+ R+ D+ W G + +++ G+I+G + Sbjct: 76 QDPIEDAYRLEVSSPGIDRPLTRRKDYQDWKGFSARIRLSAPLDGRKQFDGEIIGIDDAD 135 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS--LNNYGS 188 L+ K G+K + F ++ ++L++TD L+ A+ L++ G+ Sbjct: 136 NVILDCPKVGQK-------ILPFSAIERSKLLLTDALIAATQPLDSEGA 177 >gi|254447077|ref|ZP_05060544.1| conserved hypothetical protein [gamma proteobacterium HTCC5015] gi|198263216|gb|EDY87494.1| conserved hypothetical protein [gamma proteobacterium HTCC5015] Length = 159 Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 78/120 (65%), Gaps = 3/120 (2%) Query: 27 SVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDVENI 85 S+I+PV++++ + V + + +L ++++RD+G + + DC ++S+ +S +LDVE+ Sbjct: 10 SLIEPVVQDLGYELVGVDFRANASPAVLCVYIDRDEG-VNIDDCAKISREVSAVLDVEDP 68 Query: 86 IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFL 145 I Y LEVSSPG+DRP+ R+SDF+++ GH+ ++ + +++ G++ G E G L Sbjct: 69 ITSAYNLEVSSPGLDRPLFRESDFVKYKGHLAKVKLSIPYEERRNFKGQLNGV-EDGMVL 127 >gi|258591346|emb|CBE67645.1| conserved protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 153 Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 76/125 (60%), Gaps = 2/125 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ P+ E+ V + E +L++++++ DG +TL DC+ +S+ +S +LDVE Sbjct: 9 VRAIALPLFTELGLELVDVEFRREAGGWILRLYLDKPDG-VTLDDCQRVSEELSDLLDVE 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NII Y LEVSSPG++RP++R+SDFLR+ G + + +++ +G + G + Sbjct: 68 NIIHHPYTLEVSSPGLNRPLLRESDFLRFAGQRARVTTLQAVAGQRRFLGVLRGCEDGQV 127 Query: 144 FLEKE 148 LE+E Sbjct: 128 LLERE 132 >gi|326388031|ref|ZP_08209635.1| hypothetical protein Y88_0399 [Novosphingobium nitrogenifigens DSM 19370] gi|326207532|gb|EGD58345.1| hypothetical protein Y88_0399 [Novosphingobium nitrogenifigens DSM 19370] Length = 197 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 91/169 (53%), Gaps = 17/169 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNL-----LLQIFVERDD-GNMTLRDCEELSQAISP 78 I V++P + + F V+++L + + LQ+ ER + G + + DC ELS+ IS Sbjct: 18 IIEVVEPEAKALGFDLVRVALFGKTEVGDEEHTLQVMAERPETGQLLIEDCAELSRRISD 77 Query: 79 ILDV-----ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 +D E++IE YRLEVSSPGIDRP+ R DF W GH E+ +++ G Sbjct: 78 RMDQLEEAGEDLIEDAYRLEVSSPGIDRPLTRPKDFAGWVGHEARIELKDLIDRRKRYRG 137 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS 182 +++G + E+ + + A+ FD + A+L++TD+L+ AS Sbjct: 138 ELVGFDPATNTISIEE------DAVVYAVPFDLVAHAKLVLTDKLIAAS 180 >gi|85710532|ref|ZP_01041596.1| hypothetical protein NAP1_08982 [Erythrobacter sp. NAP1] gi|85687710|gb|EAQ27715.1| hypothetical protein NAP1_08982 [Erythrobacter sp. NAP1] Length = 188 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 90/170 (52%), Gaps = 21/170 (12%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE----EKNLLLQIFVERD-DGNMTLRDCEELSQAISPI 79 ++ +I+P E + F V++ ++ + LQI E G + + C ELS+ +S + Sbjct: 7 LTDLIEPEAEALGFELVRVKMMPSEAGDGGEALQIMAEDPATGQLVIEQCAELSRRVSDM 66 Query: 80 LDV-----ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG-DKQKLIG 133 +D E +IEG Y LEVSSPGIDRP+ R+ DF W GH IV++ G D Q++ Sbjct: 67 IDAREEAGEVLIEGAYHLEVSSPGIDRPLTREKDFANWAGH--EARIVMTKGFDGQRVYK 124 Query: 134 KIMGTSETGFF-LEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS 182 +G E G + K GE + + D + SA+L +TD+L+ A+ Sbjct: 125 GELGGVENGMVTITDAKAGEAKLPQ-------DQIHSAKLELTDKLIAAT 167 >gi|148556721|ref|YP_001264303.1| hypothetical protein Swit_3820 [Sphingomonas wittichii RW1] gi|259586199|sp|A5VCZ9|RIMP_SPHWW RecName: Full=Ribosome maturation factor rimP gi|148501911|gb|ABQ70165.1| protein of unknown function DUF150 [Sphingomonas wittichii RW1] Length = 186 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 53/160 (33%), Positives = 85/160 (53%), Gaps = 9/160 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDG-NMTLRDCEELSQAISPILDV 82 ++ +I+P + + V+++ K + LQ+ ER D + + DCE LS+ IS D Sbjct: 7 LTKLIEPEAKALGLDLVRVAFFGGKSDPTLQVMAERPDTRQLDIADCEALSRRISDKFDE 66 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 + IE YRLEVSSPGIDRP+ R D+ W+G ++ +++ G+I+ + Sbjct: 67 LDPIEDAYRLEVSSPGIDRPLTRVKDWADWSGFDARVKLAAPLDGRKQFDGRIVASDGDS 126 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS 182 L K GE + QIA SA+LI+TD L++A+ Sbjct: 127 VTLGVNKLGEVTVPLAQIA-------SAKLILTDALIKAT 159 >gi|197106903|ref|YP_002132280.1| hypothetical protein PHZ_c3442 [Phenylobacterium zucineum HLK1] gi|259586178|sp|B4RC58|RIMP_PHEZH RecName: Full=Ribosome maturation factor rimP gi|196480323|gb|ACG79851.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1] Length = 187 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 83/158 (52%), Gaps = 14/158 (8%) Query: 31 PVIEEMSFRSVQISLL--EEKNLLLQIFVER------DDGNMTLRDCEELSQAISPILDV 82 PV E + + V++ L+ E LQI ER G+M + DC +LS+A+S +LD Sbjct: 17 PVAEAVGYEIVRLRLMGGERNQRRLQIMAERPLLEDGTGGDMNVEDCAKLSRAVSEVLDA 76 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 + I G Y LEVSSPG+DRP+ R DF + G+ E+ + +++ G + G Sbjct: 77 ADPISGEYTLEVSSPGVDRPLTRLKDFDTYEGYEARLELDRLAEGRKRFRGVLAGVEGDQ 136 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 ++ E E + + F ++ A+L++TDEL++ Sbjct: 137 VAIDLEGEEETAL------VPFAWIVEAKLVLTDELMK 168 >gi|85373512|ref|YP_457574.1| hypothetical protein ELI_03425 [Erythrobacter litoralis HTCC2594] gi|122544926|sp|Q2NC14|RIMP_ERYLH RecName: Full=Ribosome maturation factor rimP gi|84786595|gb|ABC62777.1| hypothetical protein ELI_03425 [Erythrobacter litoralis HTCC2594] Length = 188 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 87/168 (51%), Gaps = 17/168 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK----NLLLQIFVERD-DGNMTLRDCEELSQAISPI 79 ++++I+P + + F V++ ++ + LQI E G + + C ELS+ +S + Sbjct: 7 LTALIEPEAKALGFELVRVKMMPSEAGDGGQALQIMAEDPATGQLLIEQCAELSRKVSDV 66 Query: 80 LDV-----ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 +D E +IEG Y LEVSSPGIDRP+ R DF W GH +V + + G Sbjct: 67 IDAAEESGEVLIEGAYHLEVSSPGIDRPLTRPKDFADWAGHEAKVSLVEKIDGHRNMRGI 126 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS 182 ++G + + GE ++ + + + SA+L++TD+L+ A+ Sbjct: 127 LLGIDGETVTIADNRAGE-------VSFALEQIHSAKLVLTDKLIAAT 167 >gi|222055778|ref|YP_002538140.1| protein of unknown function DUF150 [Geobacter sp. FRC-32] gi|254801441|sp|B9M1F7|RIMP_GEOSF RecName: Full=Ribosome maturation factor rimP gi|221565067|gb|ACM21039.1| protein of unknown function DUF150 [Geobacter sp. FRC-32] Length = 159 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 43/122 (35%), Positives = 79/122 (64%), Gaps = 7/122 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ + + V+ + V++ E + L+L++F++++ G +TL DCE +S+ +S IL+VE Sbjct: 10 VTELAEQVLSSLGMELVELEYKHEGRELVLRLFIDKE-GGVTLDDCESVSRDLSQILEVE 68 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE----IVLSSGDKQK-LIGKIMGT 138 +II GHYR EVSSPG+DRP+ + SD+ ++ G +V + +G+K+K +G++ G Sbjct: 69 DIITGHYRFEVSSPGLDRPLKKGSDYEKYAGRLVKIRTFEALADDAGNKRKTFLGELKGL 128 Query: 139 SE 140 E Sbjct: 129 KE 130 >gi|255019835|ref|ZP_05291911.1| transcription termination protein NusA-like protein [Acidithiobacillus caldus ATCC 51756] gi|254970764|gb|EET28250.1| transcription termination protein NusA-like protein [Acidithiobacillus caldus ATCC 51756] Length = 176 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 36/72 (50%), Positives = 54/72 (75%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSD 108 +++ LQ+F+E+D+G +T+ DC +S+ +S LDVEN I G YRLEVSSPG+DRP+ R++D Sbjct: 57 RSVTLQVFIEKDEGAVTIEDCAAVSRQLSVWLDVENPIAGAYRLEVSSPGLDRPLKREAD 116 Query: 109 FLRWNGHVVACE 120 F R+ G + E Sbjct: 117 FQRFVGALAEIE 128 >gi|325294241|ref|YP_004280755.1| ribosome maturation factor rimP [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064689|gb|ADY72696.1| Ribosome maturation factor rimP [Desulfurobacterium thermolithotrophum DSM 11699] Length = 162 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 84/149 (56%), Gaps = 7/149 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ P++EE F V I + E +L+I+ +R +G +T+ DC+ +S+ I +LD+E Sbjct: 12 VKELLFPILEEGGFELVDIEFVREPIGWVLRIYADRPEGGITISDCQWISERIGTLLDIE 71 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 ++I Y LEVSSPG++RP+ + DF R G VV + +++ G+++ SE+ Sbjct: 72 DLIPHAYNLEVSSPGLNRPLKNQRDFERNLGTVVKIKTHEPMDNQRNFKGEVISASESAV 131 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + R ++ I F+++ SAR+ Sbjct: 132 VIHDVSRN------AEVEIPFENIKSARI 154 >gi|164688522|ref|ZP_02212550.1| hypothetical protein CLOBAR_02167 [Clostridium bartlettii DSM 16795] gi|164602935|gb|EDQ96400.1| hypothetical protein CLOBAR_02167 [Clostridium bartlettii DSM 16795] Length = 153 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 77/117 (65%), Gaps = 2/117 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I ++QP+++ + V I ++E L+I++E++ G +TL DC E+S+ ++PILD + Sbjct: 9 IEELVQPIVDARNIEIVDIEYVKEAGQFYLRIYLEKE-GGITLDDCAEVSRELNPILDEK 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + I+ +Y LEV SPG+DRP+ ++ DF+R+ G+ V ++ ++L G+++G +E Sbjct: 68 DPIKDNYFLEVCSPGLDRPLKKEKDFIRYAGYDVEIKLYKPLNGTKQLEGELIGLTE 124 >gi|225181380|ref|ZP_03734824.1| protein of unknown function DUF150 [Dethiobacter alkaliphilus AHT 1] gi|225167961|gb|EEG76768.1| protein of unknown function DUF150 [Dethiobacter alkaliphilus AHT 1] Length = 151 Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 82/142 (57%), Gaps = 2/142 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 +A ++++ P+ E++ F V + ++E ++L++F++R+ G +TL C+E+S A+S Sbjct: 4 IAERVTAIADPLAEKLGFELVDVEYVKEGSQMILRVFIDRE-GGITLDHCQEMSHALSDE 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + IE Y LEVSSPGI+RP+ + DF+R+ G V+ ++ K+K G + G Sbjct: 63 LDRVDPIEQSYHLEVSSPGIERPLKKDEDFVRFAGKPVSIKLFAPLEGKKKYGGILRGLE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIA 161 E LE E + Q+A Sbjct: 123 EGEILLEVENNNLVRIPRTQVA 144 >gi|258516335|ref|YP_003192557.1| hypothetical protein Dtox_3192 [Desulfotomaculum acetoxidans DSM 771] gi|257780040|gb|ACV63934.1| protein of unknown function DUF150 [Desulfotomaculum acetoxidans DSM 771] Length = 153 Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 85/155 (54%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 LA + ++ PV+EEM+ V + ++E L+IF+++ G + + DC+ +SQ +S + Sbjct: 6 LADIVEGLVAPVVEEMAMELVDVEYVKEGSQWYLRIFIDKT-GGIFVDDCQAVSQKVSRL 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +D ++ I Y LEVSSPG+DRP+ + +D+ R+ G+ V K+ G++ G S Sbjct: 65 MDEKDPIPHAYILEVSSPGLDRPLKKAADYERFCGYEVVVTTYAPFNGKKSFSGRLDGLS 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E G + +++ + I D + SARL V Sbjct: 125 EQGVII--------NVDGTEYVIPVDQVASARLAV 151 >gi|134299808|ref|YP_001113304.1| hypothetical protein Dred_1961 [Desulfotomaculum reducens MI-1] gi|259585752|sp|A4J5X6|RIMP_DESRM RecName: Full=Ribosome maturation factor rimP gi|134052508|gb|ABO50479.1| protein of unknown function DUF150 [Desulfotomaculum reducens MI-1] Length = 153 Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 81/151 (53%), Gaps = 10/151 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ + P++EE V + ++E N L+IF+++ G + L DC+ +S+ I +LD Sbjct: 10 VTEAVAPIVEEAKLELVDVEYVKEGGNWYLRIFIDKP-GGIELDDCQGVSEKIDTLLDEI 68 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + + Y LEVSSPGI+RP+ + DF ++NGH+V + IGK++ +E G Sbjct: 69 DPVPQAYFLEVSSPGIERPLKKPQDFEKFNGHLVNITTFAPINGSKNFIGKLLDYNEEGI 128 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 LE + + Q+ + + +ARL V Sbjct: 129 HLEIKGK--------QVVLPHQQVATARLAV 151 >gi|270158100|ref|ZP_06186757.1| conserved hypothetical protein [Legionella longbeachae D-4968] gi|289163635|ref|YP_003453773.1| hypothetical protein LLO_0291 [Legionella longbeachae NSW150] gi|269990125|gb|EEZ96379.1| conserved hypothetical protein [Legionella longbeachae D-4968] gi|288856808|emb|CBJ10619.1| putative conserved hypothetical protein [Legionella longbeachae NSW150] Length = 147 Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 43/123 (34%), Positives = 73/123 (59%), Gaps = 2/123 (1%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 ++ ++ P I +M + L + ++ LL+I++++ DG +T+ DCE +S +S +LDV Sbjct: 5 ELEHLLAPSIADMGYELWGCEYLSQGRHSLLRIYIDKSDG-ITIDDCEAVSHQVSALLDV 63 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ I G+Y LEVSSPGI RP+ + + R+ G V + K+KL+G ++ SET Sbjct: 64 EDPIHGNYSLEVSSPGIPRPLFKSWQYQRYLGQEVQVKTFKPVCGKRKLLGTLVSASETS 123 Query: 143 FFL 145 L Sbjct: 124 IVL 126 >gi|167630354|ref|YP_001680853.1| conserved hypothetical protein, possible yhbc family [Heliobacterium modesticaldum Ice1] gi|259585782|sp|B0THQ9|RIMP_HELMI RecName: Full=Ribosome maturation factor rimP gi|167593094|gb|ABZ84842.1| conserved hypothetical protein, possible yhbc family [Heliobacterium modesticaldum Ice1] Length = 154 Score = 80.9 bits (198), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 84/157 (53%), Gaps = 10/157 (6%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQA 75 G + L +S+ P++EE+ + + ++E N L+IF++++ G + + DC+E+S+ Sbjct: 3 GKVRLEDRVSAWAMPIVEELGLELIDVEWVKEGGNWYLRIFIDKEAG-IEMEDCQEVSRR 61 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I ILD E+ + Y LEVSSPGIDRP+ D+ R+ G V ++ +G++ Sbjct: 62 IDEILDREDPVAHSYSLEVSSPGIDRPLKSDRDYERFRGETVRITTFAPVMGAKEHLGEL 121 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G +ET + K N+ ++AI + S RL Sbjct: 122 AGKNETSILIRK--------NDEEMAIPLTQVSSVRL 150 >gi|307546729|ref|YP_003899208.1| hypothetical protein HELO_4139 [Halomonas elongata DSM 2581] gi|307218753|emb|CBV44023.1| K09748 hypothetical protein [Halomonas elongata DSM 2581] Length = 153 Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 43/114 (37%), Positives = 70/114 (61%), Gaps = 2/114 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++++I+PV+ M F I L + K+ L IF++ + G + + DC ++S+ +S +LDVE Sbjct: 8 LNALIEPVVTAMGFELWGIDYLSQGKHSRLVIFIDHEQG-VGVDDCADVSRQVSAVLDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 + I G YRLEVSSPG+DRP+ F R+ GH VA ++ ++K G + G Sbjct: 67 DPIAGEYRLEVSSPGMDRPLFTLEQFERYAGHTVAVKLRAPFDGRRKFQGLLAG 120 >gi|94497166|ref|ZP_01303738.1| hypothetical protein SKA58_13228 [Sphingomonas sp. SKA58] gi|94423271|gb|EAT08300.1| hypothetical protein SKA58_13228 [Sphingomonas sp. SKA58] Length = 196 Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 86/164 (52%), Gaps = 15/164 (9%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERD-DGNMTLRDCEELSQAISPILDV 82 ++++I+P ++ + F V+I L + LQI E + + DC +S+ +S +LD Sbjct: 29 LTALIEPEVQALGFDLVRIKLFGSGDDYTLQIMAENPRTKQLVIEDCATISRRLSDVLDE 88 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGH---VVACEIVLSSGDKQKLIGKIMGTS 139 + IE YRLEVSSPGIDRP+ R DF W GH + A EIV SG ++ G + G Sbjct: 89 ADPIEEAYRLEVSSPGIDRPLTRLHDFQEWAGHEAKIGASEIV--SG-RKSFRGVVNGVD 145 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 K G+ + I F + A+L++TD L+ AS+ Sbjct: 146 GEEILFTDAKSGD-------VRIPFALVDEAKLLLTDALIAASM 182 >gi|103486102|ref|YP_615663.1| hypothetical protein Sala_0609 [Sphingopyxis alaskensis RB2256] gi|123380087|sp|Q1GVJ2|RIMP_SPHAL RecName: Full=Ribosome maturation factor rimP gi|98976179|gb|ABF52330.1| protein of unknown function DUF150 [Sphingopyxis alaskensis RB2256] Length = 181 Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 89/166 (53%), Gaps = 14/166 (8%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDG-NMTLRDCEELSQAISPILDV 82 + ++I P E M V+++ + + LQ+ ER D +T+ DC +LS+ IS LD Sbjct: 7 LHAIIAPEAEAMGLALVRVAFFGGDSDPTLQVMAERPDTRQLTIDDCADLSRRISDRLDA 66 Query: 83 -----ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++ I+ YRLEVSSPGIDRP+ R +DF W GH + +Q+ G ++G Sbjct: 67 LEEAGQDPIDVAYRLEVSSPGIDRPLTRPADFADWAGHEAKIALKEKLDGRQRFNGTLVG 126 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 ++ + D ++ + F ++ +A+L++TD+L+ A++ Sbjct: 127 -------IDGDVVTISDKEGVEHKLPFGAIDTAKLVLTDKLIAATV 165 >gi|315497223|ref|YP_004086027.1| hypothetical protein Astex_0175 [Asticcacaulis excentricus CB 48] gi|315415235|gb|ADU11876.1| protein of unknown function DUF150 [Asticcacaulis excentricus CB 48] Length = 222 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 54/155 (34%), Positives = 85/155 (54%), Gaps = 10/155 (6%) Query: 31 PVIEEMSFRSVQISLLEEKN----LLLQIFVERD-DGNMTLRDCEELSQAISPILDVENI 85 P+ E + V++ L+ LQI ER DG++T+ C LS+A+S L+ + Sbjct: 17 PIAEALGLDIVRVRLMGSNKPGGPRRLQIMAERKTDGDITVNQCARLSRALSAWLEESDP 76 Query: 86 IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFL 145 I G Y LEVSSPGIDRP+ R DF ++G E+ + +++ G + GT E G ++ Sbjct: 77 IVGEYILEVSSPGIDRPLTRLKDFDTYSGLEARLELDRLAEGRKRFRGILTGT-EDGEYV 135 Query: 146 EKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 + GE+D I FD ++ A+L++ DELL+ Sbjct: 136 AIDLEGEEDT----AMIPFDWIIDAKLVLNDELLK 166 >gi|182417563|ref|ZP_02948888.1| conserved hypothetical protein [Clostridium butyricum 5521] gi|237668728|ref|ZP_04528712.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378576|gb|EDT76104.1| conserved hypothetical protein [Clostridium butyricum 5521] gi|237657076|gb|EEP54632.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 153 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 39/106 (36%), Positives = 70/106 (66%), Gaps = 10/106 (9%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L I ++++P+ EE+S++ + ++E + L+I++++++G ++L DCE +S+ +S I Sbjct: 6 LVEKIENIVRPITEELSYKLYYVEYIKENGDFYLRIYIDKEEGRISLNDCEAVSRRVSEI 65 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDF---------LRWNGHV 116 LDVE+ IEG Y LEVSSPG++R + KS F +R+NG + Sbjct: 66 LDVEDPIEGAYYLEVSSPGLNRSLHTKSHFESVLDKEVMVRFNGTI 111 >gi|221232983|ref|YP_002515419.1| hypothetical protein CCNA_00044 [Caulobacter crescentus NA1000] gi|259585738|sp|B8GX01|RIMP_CAUCN RecName: Full=Ribosome maturation factor rimP gi|220962155|gb|ACL93511.1| hypothetical cytosolic protein [Caulobacter crescentus NA1000] Length = 191 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 88/165 (53%), Gaps = 16/165 (9%) Query: 24 DISSVIQPVIEEMSFRSVQISLL---EEKNLLLQIFVER------DDGNMTLRDCEELSQ 74 D+ ++ PV E + + V++ L+ E++ L QI E G+M + DC +LS+ Sbjct: 10 DLIEMLDPVAESLGYEIVRLRLMGGTEQRRL--QIMAEHPLLEDGSGGDMNVEDCAKLSR 67 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S +LD + I G Y LEVSSPGIDRP+ R DF + G E+ + +++ G+ Sbjct: 68 AVSEVLDAADPIAGEYTLEVSSPGIDRPLTRLKDFDDYAGLEARIELDRVAEGRKRFKGE 127 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELL 179 + G + L E GE D+ + F ++ A+L++TD L+ Sbjct: 128 LAGVEDDQVGLNIE--GEDDVT---VYFPFAWVIDAKLVMTDALM 167 >gi|52842973|ref|YP_096772.1| hypothetical protein lpg2774 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|81376651|sp|Q5ZRV2|RIMP_LEGPH RecName: Full=Ribosome maturation factor rimP gi|91208410|sp|Q5X1C1|RIMP_LEGPA RecName: Full=Ribosome maturation factor rimP gi|259585808|sp|A5IHU9|RIMP_LEGPC RecName: Full=Ribosome maturation factor rimP gi|52630084|gb|AAU28825.1| hypothetical protein lpg2774 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 147 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 84/152 (55%), Gaps = 10/152 (6%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 D+ +++P+I+ M + L + K+ LL+I++++ DG + + DC+E+S+ +S +LDV Sbjct: 5 DLIVLLEPIIKNMGYELWGCEYLSQGKHSLLRIYIDKPDG-IGIDDCQEVSKQVSAMLDV 63 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ I GHY LE+SSPGI RP+ + R+ G+ + + K+KL G I+ SE Sbjct: 64 EDPIPGHYSLEISSPGIPRPLFSIWQYQRYLGYEIHVKTFKPVNGKRKLSGIIVSASEDT 123 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L D+N I +++ A L V Sbjct: 124 IVL--------DINNEHQEILLSNIVKANLTV 147 >gi|206889666|ref|YP_002248540.1| YlxS [Thermodesulfovibrio yellowstonii DSM 11347] gi|259645127|sp|B5YJX5|RIMP_THEYD RecName: Full=Ribosome maturation factor rimP gi|206741604|gb|ACI20661.1| YlxS [Thermodesulfovibrio yellowstonii DSM 11347] Length = 164 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 43/88 (48%), Positives = 56/88 (63%), Gaps = 1/88 (1%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSD 108 K L L+IF++++ G +T++DCE S+AI ILDVE+ I+ Y LEVSSPGIDRP+ K D Sbjct: 35 KGLTLRIFIDKE-GGVTIKDCENFSRAIEAILDVEDPIKSSYTLEVSSPGIDRPLKNKKD 93 Query: 109 FLRWNGHVVACEIVLSSGDKQKLIGKIM 136 FLR G V D IGKI+ Sbjct: 94 FLRNIGRDVKITTKEKIADNTFFIGKIV 121 >gi|254496139|ref|ZP_05109037.1| conserved hypothetical protein [Legionella drancourtii LLAP12] gi|254354626|gb|EET13263.1| conserved hypothetical protein [Legionella drancourtii LLAP12] Length = 147 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 72/123 (58%), Gaps = 2/123 (1%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 ++ ++ P I +M + L + K+ LL+I++++ DG + + DC+++S +S +LDV Sbjct: 5 ELEQLLAPTINDMGYELWGCEYLSQGKHSLLRIYIDKADG-IGIEDCQDVSHQVSALLDV 63 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ I G+Y LEVSSPGI RP+ + R+ G V + +K+KL+G I+ SE Sbjct: 64 EDPIPGNYSLEVSSPGIPRPLFYSWQYQRYIGQSVQIKTFKPVNNKRKLLGTIVSASENS 123 Query: 143 FFL 145 L Sbjct: 124 VVL 126 >gi|54298758|ref|YP_125127.1| hypothetical protein lpp2822 [Legionella pneumophila str. Paris] gi|53752543|emb|CAH13975.1| hypothetical protein lpp2822 [Legionella pneumophila str. Paris] Length = 152 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 84/152 (55%), Gaps = 10/152 (6%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 D+ +++P+I+ M + L + K+ LL+I++++ DG + + DC+E+S+ +S +LDV Sbjct: 10 DLIVLLEPIIKNMGYELWGCEYLSQGKHSLLRIYIDKPDG-IGIDDCQEVSKQVSAMLDV 68 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ I GHY LE+SSPGI RP+ + R+ G+ + + K+KL G I+ SE Sbjct: 69 EDPIPGHYSLEISSPGIPRPLFSIWQYQRYLGYEIHVKTFKPVNGKRKLSGIIVSASEDT 128 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L D+N I +++ A L V Sbjct: 129 IVL--------DINNEHQEILLSNIVKANLTV 152 >gi|291523275|emb|CBK81568.1| Uncharacterized protein conserved in bacteria [Coprococcus catus GD/7] Length = 154 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 79/136 (58%), Gaps = 2/136 (1%) Query: 27 SVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENI 85 +++ P++E F V + ++E N L+ ++++++G +T+ DCEE+S+A+S +LD E+ Sbjct: 12 AMLMPIVEAKGFELVDVEWVKEGANWYLRAYIDKENG-ITVDDCEEVSRALSDLLDEEDF 70 Query: 86 IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFL 145 I +Y LEVSSPG+DRP+ ++ DF R G V ++ + +++ +G + E L Sbjct: 71 ISENYILEVSSPGLDRPLKKEKDFARSIGKDVEVKLFKAINKEKEFVGILKAYDEDTVTL 130 Query: 146 EKEKRGEKDMNELQIA 161 E E E IA Sbjct: 131 EMEDETEMQFKRSDIA 146 >gi|91205426|ref|YP_537781.1| hypothetical protein RBE_0611 [Rickettsia bellii RML369-C] gi|157827029|ref|YP_001496093.1| hypothetical protein A1I_03485 [Rickettsia bellii OSU 85-389] gi|91068970|gb|ABE04692.1| unknown [Rickettsia bellii RML369-C] gi|157802333|gb|ABV79056.1| hypothetical protein A1I_03485 [Rickettsia bellii OSU 85-389] Length = 180 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 91/160 (56%), Gaps = 9/160 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVER-DDGNMTLRDCEELSQAISPILDVE 83 I+ +IQ + +M F V + + + +++I ++R DD +T+ DC + S IS ILDVE Sbjct: 20 ITDLIQETLSDMGFELVLVRVKGLSSKVVEILIDRLDDQKVTIEDCTKASNTISAILDVE 79 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 ++IE Y LEVSS G++RP+V+ ++ R+ G V ++ + + G I+ + Sbjct: 80 DLIEEAYYLEVSSSGVERPLVKFENYKRFIGREVKIKLKELLNGRSRYQGTIIEAKDDKV 139 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 +L+ E + ++ I++D + SA L++T+E+ + L Sbjct: 140 YLKWEDQ--------EVIINYDLIKSANLVLTEEMFKKLL 171 >gi|126253833|sp|Q1RIX2|RIMP_RICBR RecName: Full=Ribosome maturation factor rimP gi|259586219|sp|A8GW29|RIMP_RICB8 RecName: Full=Ribosome maturation factor rimP Length = 168 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 91/160 (56%), Gaps = 9/160 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVER-DDGNMTLRDCEELSQAISPILDVE 83 I+ +IQ + +M F V + + + +++I ++R DD +T+ DC + S IS ILDVE Sbjct: 8 ITDLIQETLSDMGFELVLVRVKGLSSKVVEILIDRLDDQKVTIEDCTKASNTISAILDVE 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 ++IE Y LEVSS G++RP+V+ ++ R+ G V ++ + + G I+ + Sbjct: 68 DLIEEAYYLEVSSSGVERPLVKFENYKRFIGREVKIKLKELLNGRSRYQGTIIEAKDDKV 127 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 +L+ E + ++ I++D + SA L++T+E+ + L Sbjct: 128 YLKWEDQ--------EVIINYDLIKSANLVLTEEMFKKLL 159 >gi|148361088|ref|YP_001252295.1| hypothetical protein LPC_3059 [Legionella pneumophila str. Corby] gi|148282861|gb|ABQ56949.1| conserved hypothetical protein; DUF150 [Legionella pneumophila str. Corby] Length = 140 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 82/148 (55%), Gaps = 10/148 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 +++P+I+ M + L + K+ LL+I++++ DG + + DC+E+S+ +S +LDVE+ I Sbjct: 2 LLEPIIKNMGYELWGCEYLSQGKHSLLRIYIDKPDG-IGIDDCQEVSKQVSAMLDVEDPI 60 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE 146 GHY LE+SSPGI RP+ + R+ G+ + + K+KL G I+ SE L Sbjct: 61 PGHYSLEISSPGIPRPLFSIWQYQRYLGYEIHVKTFKPVNGKRKLSGIIVSASEDTIVL- 119 Query: 147 KEKRGEKDMNELQIAISFDSLLSARLIV 174 D+N I +++ A L V Sbjct: 120 -------DINNEHQEILLSNIVKANLTV 140 >gi|34223001|sp|Q9AC22|RIMP_CAUCR RecName: Full=Ribosome maturation factor rimP Length = 178 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 86/161 (53%), Gaps = 16/161 (9%) Query: 28 VIQPVIEEMSFRSVQISLL---EEKNLLLQIFVER------DDGNMTLRDCEELSQAISP 78 ++ PV E + + V++ L+ E++ L QI E G+M + DC +LS+A+S Sbjct: 1 MLDPVAESLGYEIVRLRLMGGTEQRRL--QIMAEHPLLEDGSGGDMNVEDCAKLSRAVSE 58 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LD + I G Y LEVSSPGIDRP+ R DF + G E+ + +++ G++ G Sbjct: 59 VLDAADPIAGEYTLEVSSPGIDRPLTRLKDFDDYAGLEARIELDRVAEGRKRFKGELAGV 118 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELL 179 + L E GE D+ + F ++ A+L++TD L+ Sbjct: 119 EDDQVGLNIE--GEDDVT---VYFPFAWVIDAKLVMTDALM 154 >gi|323701862|ref|ZP_08113532.1| protein of unknown function DUF150 [Desulfotomaculum nigrificans DSM 574] gi|323533166|gb|EGB23035.1| protein of unknown function DUF150 [Desulfotomaculum nigrificans DSM 574] Length = 153 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 83/151 (54%), Gaps = 10/151 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 +++ I+P++EE V + ++E N L++F+++ G + L DC+ LS+ + +LD Sbjct: 10 VTAAIEPIVEESKLELVNVEYVKEGGNWYLRVFIDKP-GGVDLDDCQMLSEKLDKLLDEL 68 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I Y LEVSSPGI+RP+ + DF R+ GH+V + GK+ G +E G Sbjct: 69 DPIPQAYFLEVSSPGIERPLKKPEDFERFMGHLVNITTYTPIDGAKSFTGKLQGYTEAG- 127 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E E +G+ + I D + ++RL V Sbjct: 128 -IEIEVKGK------PMLIPHDRVATSRLAV 151 >gi|87200506|ref|YP_497763.1| hypothetical protein Saro_2493 [Novosphingobium aromaticivorans DSM 12444] gi|123488750|sp|Q2G5E4|RIMP_NOVAD RecName: Full=Ribosome maturation factor rimP gi|87136187|gb|ABD26929.1| protein of unknown function DUF150 [Novosphingobium aromaticivorans DSM 12444] Length = 186 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 90/177 (50%), Gaps = 19/177 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-----EKNLLLQIFVER-DDGNMTLRDCEELSQAISP 78 I V++P + + F V++ + ++ LQI ER D G + + DC LS+ +S Sbjct: 7 IIEVVEPEAKALGFDLVRVRYFKGGEIGDEEHTLQIMAERPDTGQLVIEDCAALSRRVSD 66 Query: 79 ILDV-----ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 D + +IE YRLEVSSPGIDRP+ R DF W GH E+ ++++ G Sbjct: 67 RFDELEEAGDVLIEDAYRLEVSSPGIDRPLTRAKDFAAWIGHEARVELSELLDNRKRFRG 126 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS--LNNYGS 188 ++ G + E G + + FD + +A+LI+TD+L+ AS L+ G+ Sbjct: 127 ELKGFDAETQAISIEDDG------VVFEVPFDLVSNAKLILTDKLIAASRPLDTSGA 177 >gi|296285013|ref|ZP_06863011.1| hypothetical protein CbatJ_15405 [Citromicrobium bathyomarinum JL354] Length = 188 Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 19/176 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE----EKNLLLQIFVERD-DGNMTLRDCEELSQAISPI 79 ++ +I+P + + F V++ ++ + LQI E G + + C LS+A+S Sbjct: 7 LTQIIEPEAQALGFELVRVKMMPSEAGDGTQALQIMAEDPATGQLVIEQCAALSRAVSAK 66 Query: 80 LDV-----ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 +D + +IEG Y LEVSSPGIDRP+ R DF W GH + ++ G Sbjct: 67 IDALEEQGDVLIEGAYHLEVSSPGIDRPLTRTKDFSDWAGHEAKISMAKGYDGQRNYRGS 126 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS--LNNYGS 188 + G + K G+ + + D + SA+L++TDEL+ A+ L+ G+ Sbjct: 127 LKGIEGDMVTITDRKAGD-------VELPRDQIHSAQLVLTDELIAATRPLDTTGA 175 >gi|294085150|ref|YP_003551910.1| hypothetical protein SAR116_1583 [Candidatus Puniceispirillum marinum IMCC1322] gi|292664725|gb|ADE39826.1| hypothetical protein SAR116_1583 [Candidatus Puniceispirillum marinum IMCC1322] Length = 177 Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 84/151 (55%), Gaps = 10/151 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLL--EEKNLLLQIFVER-DDGNMTLRDCEELSQAISPILD 81 +S +I+ +E++ F+ V++ + LQI E +D MT+ DC++LS+ I+ +LD Sbjct: 17 VSKIIEAAVEDLGFQLVRVLFMGGNSGRNQLQIMAEPVEDREMTVEDCKKLSRHIAALLD 76 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I Y LEVSSPGIDRP+ + D+ R+ G + + + +++ G++ G + Sbjct: 77 VEDPISSAYVLEVSSPGIDRPLTKIEDYERFEGELAKINLRMMRDGRRRFNGRLNGFDDE 136 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G + + G + A +FD + SAR+ Sbjct: 137 GKIVLETTFG-------RFAFAFDEIDSARI 160 >gi|295687484|ref|YP_003591177.1| hypothetical protein Cseg_0027 [Caulobacter segnis ATCC 21756] gi|295429387|gb|ADG08559.1| protein of unknown function DUF150 [Caulobacter segnis ATCC 21756] Length = 196 Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 16/165 (9%) Query: 24 DISSVIQPVIEEMSFRSVQISLL---EEKNLLLQIFVER------DDGNMTLRDCEELSQ 74 D+ ++ PV E + + V++ L+ E++ L QI E G+M + DC LS+ Sbjct: 10 DLIEMLDPVAESLGYEIVRLRLMGGAEQRRL--QIMAEHPLLEDGTGGDMNVEDCARLSR 67 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 IS ILD + I G Y LEVSSPG+DRP+ R DF + G E+ + +++ G+ Sbjct: 68 GISEILDAADPIAGEYTLEVSSPGVDRPLTRLKDFEDYAGLEARIELDRVAEGRKRFKGE 127 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELL 179 + G + L E GE D+ + F ++ A+L++TD L+ Sbjct: 128 LAGIEDDQVGLNIE--GEDDVT---VYFPFAWIIDAKLVMTDTLM 167 >gi|326794268|ref|YP_004312088.1| ribosome maturation factor rimP [Marinomonas mediterranea MMB-1] gi|326545032|gb|ADZ90252.1| Ribosome maturation factor rimP [Marinomonas mediterranea MMB-1] Length = 153 Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 42/116 (36%), Positives = 73/116 (62%), Gaps = 2/116 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERD-DGNMTLRDCEELSQAISPILDV 82 I +I+PV+E + F+ + + + K+ +L+IF+E D + + + DC ++S+ +S ILDV Sbjct: 8 IEELIRPVVEGLGFQFWGMEYISQGKHSVLRIFIETDKEKGIDVEDCAQVSRQVSSILDV 67 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 E+ I G Y LEVSSPG+DRP+ S + + G VVA ++ + ++K G++ G Sbjct: 68 EDPITGEYNLEVSSPGLDRPLFELSQYESYVGSVVALKLRVPFDGRRKFKGQLTGV 123 >gi|114321099|ref|YP_742782.1| hypothetical protein Mlg_1950 [Alkalilimnicola ehrlichii MLHE-1] gi|114227493|gb|ABI57292.1| protein of unknown function DUF150 [Alkalilimnicola ehrlichii MLHE-1] Length = 176 Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 83/151 (54%), Gaps = 9/151 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++I P++ M + V I LL+I+++ DG +TL DCE S+ IS +LDVE Sbjct: 32 LYALIDPLLTGMGYELVGIEYGGPAGKRLLRIYIDSPDG-ITLDDCETCSRQISAVLDVE 90 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I G Y LE+SSPG+DRP+ + SD+ R+ G + + +++ G + G + G Sbjct: 91 DPIPGEYTLEISSPGLDRPIFKASDYDRFAGEQIKIRLSAPWEGRRRFKGVLAGLGDEGV 150 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E +G+ ++ I D + ARLI+ Sbjct: 151 RV-VEAQGD------EVQIPLDLIEKARLIL 174 >gi|125973510|ref|YP_001037420.1| hypothetical protein Cthe_0995 [Clostridium thermocellum ATCC 27405] gi|256003328|ref|ZP_05428319.1| protein of unknown function DUF150 [Clostridium thermocellum DSM 2360] gi|281417713|ref|ZP_06248733.1| protein of unknown function DUF150 [Clostridium thermocellum JW20] gi|259585742|sp|A3DE48|RIMP_CLOTH RecName: Full=Ribosome maturation factor rimP gi|125713735|gb|ABN52227.1| protein of unknown function DUF150 [Clostridium thermocellum ATCC 27405] gi|255992618|gb|EEU02709.1| protein of unknown function DUF150 [Clostridium thermocellum DSM 2360] gi|281409115|gb|EFB39373.1| protein of unknown function DUF150 [Clostridium thermocellum JW20] gi|316940251|gb|ADU74285.1| protein of unknown function DUF150 [Clostridium thermocellum DSM 1313] Length = 154 Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 76/124 (61%), Gaps = 2/124 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ + PV+ + SF V + ++E + L+I++++ G +T+ DC+ +S+ IS ILD E Sbjct: 10 VTEIANPVVNKHSFELVDVEFIKEGSSWYLRIYIDKP-GGITIDDCQVVSEEISDILDKE 68 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I Y LEVSSPG+DRP+ ++SDF R+ G +V ++ K+ G+++G + Sbjct: 69 DPIPHSYFLEVSSPGLDRPLKKESDFERFKGELVEVKVFKPIEGKKIFEGELVGYKDNKI 128 Query: 144 FLEK 147 ++K Sbjct: 129 IIKK 132 >gi|313892594|ref|ZP_07826181.1| conserved hypothetical protein [Dialister microaerophilus UPII 345-E] gi|313118991|gb|EFR42196.1| conserved hypothetical protein [Dialister microaerophilus UPII 345-E] Length = 156 Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 35/97 (36%), Positives = 64/97 (65%), Gaps = 1/97 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + ++IQPV+E+ V + + E+N +L+IF+++D G + L DC+E+S + ++D + Sbjct: 10 VEALIQPVLEKKGIEVVDVEYVRERNWILRIFIDKD-GGVDLNDCQEISVSAGELIDKND 68 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 +I +Y LEVSSPGIDR + + DF+R+ V+ ++ Sbjct: 69 LISDNYMLEVSSPGIDRVLKKDKDFIRYKDSKVSVKL 105 >gi|329121256|ref|ZP_08249883.1| hypothetical protein HMPREF9083_0344 [Dialister micraerophilus DSM 19965] gi|327470190|gb|EGF15653.1| hypothetical protein HMPREF9083_0344 [Dialister micraerophilus DSM 19965] Length = 156 Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 35/97 (36%), Positives = 64/97 (65%), Gaps = 1/97 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + ++IQPV+E+ V + + E+N +L+IF+++D G + L DC+E+S + ++D + Sbjct: 10 VEALIQPVLEKKGIEVVDVEYVRERNWILRIFIDKD-GGVDLNDCQEISVSAGELIDKND 68 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 +I +Y LEVSSPGIDR + + DF+R+ V+ ++ Sbjct: 69 LISDNYMLEVSSPGIDRVLKKDKDFIRYKDSKVSVKL 105 >gi|259585707|sp|Q0A795|RIMP_ALHEH RecName: Full=Ribosome maturation factor rimP Length = 152 Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 82/149 (55%), Gaps = 9/149 (6%) Query: 27 SVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENI 85 ++I P++ M + V I LL+I+++ DG +TL DCE S+ IS +LDVE+ Sbjct: 10 ALIDPLLTGMGYELVGIEYGGPAGKRLLRIYIDSPDG-ITLDDCETCSRQISAVLDVEDP 68 Query: 86 IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFL 145 I G Y LE+SSPG+DRP+ + SD+ R+ G + + +++ G + G + G + Sbjct: 69 IPGEYTLEISSPGLDRPIFKASDYDRFAGEQIKIRLSAPWEGRRRFKGVLAGLGDEGVRV 128 Query: 146 EKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +G+ ++ I D + ARLI+ Sbjct: 129 -VEAQGD------EVQIPLDLIEKARLIL 150 >gi|254419012|ref|ZP_05032736.1| conserved hypothetical protein [Brevundimonas sp. BAL3] gi|196185189|gb|EDX80165.1| conserved hypothetical protein [Brevundimonas sp. BAL3] Length = 199 Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 8/155 (5%) Query: 28 VIQPVIEEMSFRSVQISLLE-EKNLLLQIFVER-DDGNMTLRDCEELSQAISPILDVENI 85 +I P+ E + V++ L+ K LQI ER D ++++ C +LS+A+S + D + Sbjct: 14 LIDPIAESLGLEVVRVRLMTGSKRQRLQIMAERPSDHDISVEQCAKLSRAVSEVFDAADP 73 Query: 86 IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFL 145 I G Y LEVSSPGIDRP+ R DF + G E +++ G + G + + Sbjct: 74 IAGEYMLEVSSPGIDRPLTRPLDFDLFEGEEARLETDRMIEGRKRFKGVLAGYEDGNVLI 133 Query: 146 EKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 + + E + I FD L A+L++TD L++ Sbjct: 134 DLDGEDETAL------IPFDWLSDAKLVLTDALMK 162 >gi|332188274|ref|ZP_08390001.1| hypothetical protein SUS17_3404 [Sphingomonas sp. S17] gi|332011670|gb|EGI53748.1| hypothetical protein SUS17_3404 [Sphingomonas sp. S17] Length = 192 Score = 77.4 bits (189), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 84/166 (50%), Gaps = 14/166 (8%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDG-NMTLRDCEELSQAISPILDV 82 ++ +I+P + + F V++ + + LQ+ ER D + + DC +LS+ IS ++D Sbjct: 7 LTQLIEPEAKALGFELVRVKMYGGTSDPTLQVMAERPDTRQLNIDDCADLSRRISDVMDA 66 Query: 83 -----ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 + I+ YRLEVSSPGIDRP+ R DF W GH + +++ G + G Sbjct: 67 LEEQGRDPIDHAYRLEVSSPGIDRPLTRLKDFADWAGHEARITLAEKLNGRKQFKGDLAG 126 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 + D E++ + F ++ A+L++TD L+ A++ Sbjct: 127 IEGDNVII-------VDGEEVRHKLPFAAIEDAKLVMTDRLIAATV 165 >gi|54295604|ref|YP_128019.1| hypothetical protein lpl2691 [Legionella pneumophila str. Lens] gi|53755436|emb|CAH16932.1| hypothetical protein lpl2691 [Legionella pneumophila str. Lens] Length = 152 Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 83/152 (54%), Gaps = 10/152 (6%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 D+ +++P+I+ M + L + K+ LL+I++++ DG + + DC+E+S+ +S +LDV Sbjct: 10 DLIVLLEPIIKNMGYELWGCEYLSQGKHSLLRIYIDKPDG-IGIDDCQEVSKQVSAMLDV 68 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ I GHY LE+SSPGI RP+ + R+ G+ + + K+KL G I+ S Sbjct: 69 EDPIPGHYSLEISSPGIPRPLFSIWQYQRYLGYEIHVKTFKPVNGKRKLSGIIVSASGDT 128 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L D+N I +++ A L V Sbjct: 129 IVL--------DINNEHQEILLSNIVKANLTV 152 >gi|91208407|sp|Q5WT34|RIMP_LEGPL RecName: Full=Ribosome maturation factor rimP Length = 147 Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 83/152 (54%), Gaps = 10/152 (6%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 D+ +++P+I+ M + L + K+ LL+I++++ DG + + DC+E+S+ +S +LDV Sbjct: 5 DLIVLLEPIIKNMGYELWGCEYLSQGKHSLLRIYIDKPDG-IGIDDCQEVSKQVSAMLDV 63 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ I GHY LE+SSPGI RP+ + R+ G+ + + K+KL G I+ S Sbjct: 64 EDPIPGHYSLEISSPGIPRPLFSIWQYQRYLGYEIHVKTFKPVNGKRKLSGIIVSASGDT 123 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L D+N I +++ A L V Sbjct: 124 IVL--------DINNEHQEILLSNIVKANLTV 147 >gi|332141180|ref|YP_004426918.1| hypothetical protein MADE_1008910 [Alteromonas macleodii str. 'Deep ecotype'] gi|259585705|sp|B4RXT6|RIMP_ALTMD RecName: Full=Ribosome maturation factor rimP gi|327551202|gb|AEA97920.1| hypothetical protein MADE_1008910 [Alteromonas macleodii str. 'Deep ecotype'] Length = 152 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 81/140 (57%), Gaps = 8/140 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +++P +E + F V I + K+ +L++F++ ++G +T+ DC ++S +S ILDVE Sbjct: 8 LTEMLEPGVEALGFELVGIEFVRAGKHSILRVFIDHENG-ITVDDCADVSHQVSAILDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I Y LEVSSPG+DRP+ ++ ++ G VV + + D++ GK++ E G Sbjct: 67 DPISTEYNLEVSSPGMDRPLFKEKHYIESVGEVVQVRLSMPMDDRRNFKGKVLAC-ENGM 125 Query: 144 FLEKEKRGEKDMNELQIAIS 163 E D + Q+A++ Sbjct: 126 V-----SIEVDGQQFQLAVA 140 >gi|148263955|ref|YP_001230661.1| hypothetical protein Gura_1898 [Geobacter uraniireducens Rf4] gi|189030115|sp|A5GF83|RIMP_GEOUR RecName: Full=Ribosome maturation factor rimP gi|146397455|gb|ABQ26088.1| protein of unknown function DUF150 [Geobacter uraniireducens Rf4] Length = 159 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 48/131 (36%), Positives = 77/131 (58%), Gaps = 13/131 (9%) Query: 47 EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRK 106 E + ++L++FV+++ G + L DC +S+ +S +LDVE++I HY LEVSSPGIDRP+ + Sbjct: 33 EGREMVLRLFVDKE-GGVNLDDCASVSRELSEVLDVEDVISEHYSLEVSSPGIDRPLKKV 91 Query: 107 SDFLRWNGHVVACE----IVLSSGDKQK-LIGKIMGTSETGFFLEKEKRGEKDMNELQIA 161 DF R+ G +V + +G+K+K +G++ G E G L K G+ A Sbjct: 92 EDFQRFKGRLVKIRTFEPLPDDAGNKRKTFLGELKGI-ENGVVLVALKEGQ------NAA 144 Query: 162 ISFDSLLSARL 172 I F+ + A L Sbjct: 145 IPFEKVAKANL 155 >gi|239997163|ref|ZP_04717687.1| hypothetical protein AmacA2_22177 [Alteromonas macleodii ATCC 27126] Length = 152 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 81/140 (57%), Gaps = 8/140 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +++P +E + F V I + K+ +L++F++ ++G +T+ DC ++S +S ILDVE Sbjct: 8 LTEMLEPGVEALGFELVGIEFVRAGKHSILRVFIDHENG-ITVDDCADVSHQVSAILDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I Y LEVSSPG+DRP+ ++ ++ G VV + + D++ GK++ E G Sbjct: 67 DPISTEYNLEVSSPGMDRPLFKEKHYIESVGEVVQIRLSMPMDDRRNFKGKVLAC-ENGI 125 Query: 144 FLEKEKRGEKDMNELQIAIS 163 E D + Q+A++ Sbjct: 126 V-----SIEVDGQQFQLAVA 140 >gi|189424725|ref|YP_001951902.1| hypothetical protein Glov_1666 [Geobacter lovleyi SZ] gi|226736404|sp|B3EAE4|RIMP_GEOLS RecName: Full=Ribosome maturation factor rimP gi|189420984|gb|ACD95382.1| protein of unknown function DUF150 [Geobacter lovleyi SZ] Length = 159 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 35/97 (36%), Positives = 65/97 (67%), Gaps = 2/97 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +++QP+++ M V++ + ++ LL++F+++ DG + L DC E+S+ +S LDVE Sbjct: 10 VETLLQPILDAMGLELVELEFKKVGRSYLLRVFIDKPDG-VNLDDCAEVSRELSVQLDVE 68 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 + I Y LEVSSPG+DRP+ ++ DF+R+ G + + Sbjct: 69 DCIASRYTLEVSSPGLDRPLKKEQDFIRYQGRLAVVK 105 >gi|329847355|ref|ZP_08262383.1| hypothetical protein ABI_04190 [Asticcacaulis biprosthecum C19] gi|328842418|gb|EGF91987.1| hypothetical protein ABI_04190 [Asticcacaulis biprosthecum C19] Length = 205 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 79/158 (50%), Gaps = 11/158 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEEKN----LLLQIFVERD-DGNMTLRDCEELSQAISPILDV 82 + P+ E+ V++ L+ LQI ER DG + + C LS+A+S LD Sbjct: 14 IFDPIANELGLNIVRVRLMGSNKPGGARRLQIMAERQSDGEINVNQCARLSRALSAFLDE 73 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 + I G Y LEVSSPGIDRP+ R DF + G+ E+ + +++ G + G Sbjct: 74 ADPISGDYVLEVSSPGIDRPLTRLKDFETYQGYEARIELDRLAEGRKRFRGTLAGVEGDH 133 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 ++ E E + + F ++ A+L++TDEL++ Sbjct: 134 IAIDLEGEPETAL------MPFAWVIDAKLVLTDELMK 165 >gi|300854497|ref|YP_003779481.1| hypothetical protein CLJU_c13110 [Clostridium ljungdahlii DSM 13528] gi|300434612|gb|ADK14379.1| conserved hypothetical protein [Clostridium ljungdahlii DSM 13528] Length = 154 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 84/149 (56%), Gaps = 9/149 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 +S++IQP++ +++ + +E N L+I++++ +GN++L DCE +S+A+S +LD E Sbjct: 10 MSALIQPIVNNLNYELYYLEFKKEGNNNYLRIYIDKKEGNISLEDCESVSRAVSDMLDKE 69 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I+ Y LEVSSPG++R + + R+ G+ V I K+K G+++ + Sbjct: 70 DPIKDPYYLEVSSPGVERKLYTEEHLKRYIGYSVQVNISGLLKGKKKYEGELLDFNSNEL 129 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ E E IAI D +L+ L Sbjct: 130 KIKCE--------EEDIAIPRDKILNVNL 150 >gi|329891252|ref|ZP_08269595.1| hypothetical protein BDIM_29650 [Brevundimonas diminuta ATCC 11568] gi|328846553|gb|EGF96117.1| hypothetical protein BDIM_29650 [Brevundimonas diminuta ATCC 11568] Length = 198 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 80/155 (51%), Gaps = 8/155 (5%) Query: 28 VIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERD-DGNMTLRDCEELSQAISPILDVENI 85 +I PV E + V++ L+ LQI ER D ++++ +C LS+A+S +LD + Sbjct: 14 LIDPVAESLGLAVVRVRLMGGTLRRRLQIMAERQTDHDISVEECARLSRAVSEVLDAADP 73 Query: 86 IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFL 145 I G Y LEVSSPGIDRP+ R DF + G E +++ G + GT + Sbjct: 74 ISGEYLLEVSSPGIDRPLTRLIDFDLFEGLEARLETDRMVEGRKRFKGVVAGTEGENIAI 133 Query: 146 EKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 + + E + I F L A+L++TDELL+ Sbjct: 134 DLDGEDETAL------IPFAWLADAKLVLTDELLK 162 >gi|253581489|ref|ZP_04858714.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] gi|251836559|gb|EES65094.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] Length = 159 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 80/159 (50%), Gaps = 10/159 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQ 74 + + I +++ PV+ EM V I L++ ++I+VE +G++TL DC +S Sbjct: 4 YNKENILKKIETIVTPVVNEMKLSLVDIEYLQDGGYWYVRIYVENLEGDITLEDCATISN 63 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 + D++ +IE + LEVSSPGI+RP+ + D++R+ G + D + G Sbjct: 64 KVDE--DIDKLIEQRFFLEVSSPGIERPLKKIDDYIRFKGEKAKLSLKHKVNDNKNFEGI 121 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 I+ ++ +LE E NE I I F + A L+ Sbjct: 122 IIDCRDSIIYLEVE-------NEKIIEIPFSEVRKANLV 153 >gi|296108418|ref|YP_003620119.1| putative protein conserved in bacteria [Legionella pneumophila 2300/99 Alcoy] gi|295650320|gb|ADG26167.1| putative protein conserved in bacteria [Legionella pneumophila 2300/99 Alcoy] gi|307611646|emb|CBX01333.1| hypothetical protein LPW_30281 [Legionella pneumophila 130b] Length = 131 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 45/130 (34%), Positives = 73/130 (56%), Gaps = 9/130 (6%) Query: 45 LLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMV 104 L + K+ LL+I++++ DG + + DC+E+S+ +S +LDVE+ I GHY LE+SSPGI RP+ Sbjct: 11 LSQGKHSLLRIYIDKPDG-IGIDDCQEVSKQVSAMLDVEDPIPGHYSLEISSPGIPRPLF 69 Query: 105 RKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISF 164 + R+ G+ + + K+KL G I+ SE L D+N I Sbjct: 70 SIWQYQRYLGYEIHVKTFKPVNGKRKLSGIIVSASEDTIVL--------DINNEHQEILL 121 Query: 165 DSLLSARLIV 174 +++ A L V Sbjct: 122 SNIVKANLTV 131 >gi|92115191|ref|YP_575119.1| hypothetical protein Csal_3076 [Chromohalobacter salexigens DSM 3043] gi|122419134|sp|Q1QSY8|RIMP_CHRSD RecName: Full=Ribosome maturation factor rimP gi|91798281|gb|ABE60420.1| protein of unknown function DUF150 [Chromohalobacter salexigens DSM 3043] Length = 153 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 41/115 (35%), Positives = 67/115 (58%), Gaps = 2/115 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++I+PV+ M F + L + K+ L I++E DG +T+ DC +S+ +S +LDVE Sbjct: 8 LKALIEPVVTAMGFELWGVDYLSQGKHSRLVIYIESADG-VTVDDCAAVSRQVSGVLDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 + I G YRLEVSSPG+DRP+ F + G V ++ ++K G++ G Sbjct: 67 DPISGEYRLEVSSPGMDRPLFTLEQFASFKGSHVKVKLSTPFEGRRKFQGQLAGV 121 >gi|206900815|ref|YP_002250929.1| YlxS [Dictyoglomus thermophilum H-6-12] gi|259585753|sp|B5YEH1|RIMP_DICT6 RecName: Full=Ribosome maturation factor rimP gi|206739918|gb|ACI18976.1| YlxS [Dictyoglomus thermophilum H-6-12] Length = 156 Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 83/157 (52%), Gaps = 10/157 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 M + +++P+ E+ S+ V + E + +L++++++ G +T+ DC LS+ IS Sbjct: 7 MEFYKKLKEIVEPICEKYSYELVDLEYRREPHGWVLRVYIDKV-GGVTVEDCAYLSEKIS 65 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD+++ I Y LEVSSPG+DRP+ RK DF R G V ++ K+K GKI Sbjct: 66 KELDIKDPIPHSYILEVSSPGLDRPLKRKRDFERHMGEKVNITLLEEIEGKKKFEGKIFK 125 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E+ L+ +++ + I + + A LIV Sbjct: 126 VDESSVTLK--------IDDSFVTIPLEKIKKAMLIV 154 >gi|87119793|ref|ZP_01075690.1| hypothetical protein MED121_07630 [Marinomonas sp. MED121] gi|86165269|gb|EAQ66537.1| hypothetical protein MED121_07630 [Marinomonas sp. MED121] Length = 153 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 39/112 (34%), Positives = 69/112 (61%), Gaps = 2/112 (1%) Query: 29 IQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMT-LRDCEELSQAISPILDVENII 86 I+PV+E + +R + + + K+ +L++F+E D N T + DC ++S+ +S ILDVE+ I Sbjct: 12 IRPVVEGLGYRFWGLEYISQGKDSVLRVFIESDSENGTDIEDCAKVSRQVSSILDVEDPI 71 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 G Y LEVSSPG+DRP+ + F + G +V+ + + ++K G++ Sbjct: 72 TGEYNLEVSSPGLDRPLFELAQFEEYIGAIVSLRLRVPFDGRRKFKGQLTAV 123 >gi|16124301|ref|NP_418865.1| hypothetical protein CC_0045 [Caulobacter crescentus CB15] gi|13421139|gb|AAK22033.1| conserved hypothetical protein [Caulobacter crescentus CB15] Length = 160 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 67/118 (56%), Gaps = 5/118 (4%) Query: 62 GNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 G+M + DC +LS+A+S +LD + I G Y LEVSSPGIDRP+ R DF + G E+ Sbjct: 24 GDMNVEDCAKLSRAVSEVLDAADPIAGEYTLEVSSPGIDRPLTRLKDFDDYAGLEARIEL 83 Query: 122 VLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELL 179 + +++ G++ G + L E GE D+ + F ++ A+L++TD L+ Sbjct: 84 DRVAEGRKRFKGELAGVEDDQVGLNIE--GEDDVT---VYFPFAWVIDAKLVMTDALM 136 >gi|239946886|ref|ZP_04698639.1| UPF0090 protein [Rickettsia endosymbiont of Ixodes scapularis] gi|239921162|gb|EER21186.1| UPF0090 protein [Rickettsia endosymbiont of Ixodes scapularis] Length = 166 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 90/160 (56%), Gaps = 9/160 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDG-NMTLRDCEELSQAISPILDVE 83 I++VI+ + +M F V + +++I ++ +G +++ DC + S+ IS ILDVE Sbjct: 8 ITNVIEESLTDMGFELVLVKFKGVNPKVVEILIDSLNGEKISVEDCTKASRTISAILDVE 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 ++IE Y LEVSS G++RP+V+ ++ R++G V ++ K + GKI+ Sbjct: 68 DLIEDTYSLEVSSSGLERPLVKFENYNRFSGREVKIKLKELLNGKTRYQGKIIKAENNKI 127 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 +L+ E E ++ I +D + +A L++T+E+ + L Sbjct: 128 YLKCE--------EQEVLIDYDLIKNANLVLTEEVFKKLL 159 >gi|197121570|ref|YP_002133521.1| hypothetical protein AnaeK_1159 [Anaeromyxobacter sp. K] gi|259585696|sp|B4UHF7|RIMP_ANASK RecName: Full=Ribosome maturation factor rimP gi|196171419|gb|ACG72392.1| protein of unknown function DUF150 [Anaeromyxobacter sp. K] Length = 171 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 69/125 (55%), Gaps = 12/125 (9%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 G+ +A + S+++PV+E + V++ L++F+++ G + + DC+ +S+ Sbjct: 4 IGEQSIAEQVRSLLEPVLERDGYELVEVEWARLAGRWTLRVFIDKA-GGVGIDDCQAVSK 62 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 + PILDV ++IE Y LEVSSPG+DRP+ + DF R+ G V K G Sbjct: 63 TVEPILDVADVIEPAYDLEVSSPGLDRPLRKPRDFDRYAGQRVHV----------KAYGP 112 Query: 135 IMGTS 139 + GT+ Sbjct: 113 VAGTA 117 >gi|261856065|ref|YP_003263348.1| hypothetical protein Hneap_1469 [Halothiobacillus neapolitanus c2] gi|261836534|gb|ACX96301.1| protein of unknown function DUF150 [Halothiobacillus neapolitanus c2] Length = 166 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 39/93 (41%), Positives = 59/93 (63%), Gaps = 1/93 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 I +++QPV+E V + LL+++++ + G +TL DC ++S A+S +LDVE+ Sbjct: 8 IEALLQPVVEAAGCAWVGGEFRGGPDGLLRVYIDTEAG-VTLDDCTKVSDALSGVLDVED 66 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 G YRLEVSSPG++RPM R SDF + G V Sbjct: 67 PFPGFYRLEVSSPGVERPMFRASDFALFIGQKV 99 >gi|153954052|ref|YP_001394817.1| hypothetical protein CKL_1427 [Clostridium kluyveri DSM 555] gi|219854665|ref|YP_002471787.1| hypothetical protein CKR_1322 [Clostridium kluyveri NBRC 12016] gi|189038691|sp|A5N838|RIMP_CLOK5 RecName: Full=Ribosome maturation factor rimP gi|254800038|sp|B9E1J8|RIMP_CLOK1 RecName: Full=Ribosome maturation factor rimP gi|146346933|gb|EDK33469.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555] gi|219568389|dbj|BAH06373.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 154 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 70/122 (57%), Gaps = 1/122 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + +I+P+++ ++F + E N L+IF+++++GN++L DCE +S+A+S I Sbjct: 6 LVERVLKLIKPIVDNLNFELYHLEFKREGNNNYLRIFIDKEEGNISLEDCEAVSRAVSDI 65 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD E+ I Y LEVSSPGI+R + R+ G V I K+K GK++ Sbjct: 66 LDREDPIRDPYYLEVSSPGIERTLYTHEHLKRYIGFNVIVNIQGLLKGKKKYQGKLLSFD 125 Query: 140 ET 141 E+ Sbjct: 126 ES 127 >gi|88812962|ref|ZP_01128205.1| hypothetical protein NB231_03777 [Nitrococcus mobilis Nb-231] gi|88789740|gb|EAR20864.1| hypothetical protein NB231_03777 [Nitrococcus mobilis Nb-231] Length = 150 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 40/114 (35%), Positives = 71/114 (62%), Gaps = 2/114 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ V++PV+ M + V I K+ LL+I++++ DG +++ DC +S IS +LDVE Sbjct: 7 LTKVVEPVVAAMGYELVGIEYRPSKSQALLRIYIDKADG-ISVEDCALVSNQISGVLDVE 65 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 + + G Y LEVSSPG+ RP+ + SD+ R+ G +V I + ++++ G + G Sbjct: 66 DPLSGRYTLEVSSPGLRRPIFKASDYERFAGELVHIRIRGTLDGRRRIHGLLRG 119 >gi|303240819|ref|ZP_07327332.1| protein of unknown function DUF150 [Acetivibrio cellulolyticus CD2] gi|302591707|gb|EFL61442.1| protein of unknown function DUF150 [Acetivibrio cellulolyticus CD2] Length = 153 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 39/114 (34%), Positives = 70/114 (61%), Gaps = 2/114 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +PV+ F V + ++E N L+I++++ G +T+ DC+ +S+ IS ILD + Sbjct: 10 VAEFAEPVVANHYFELVDVEFIKEGTNWYLRIYIDKP-GGITIDDCQIISEEISDILDKK 68 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 + IE Y LEVSSPG+DRP+ ++SDF R+ G +V ++ ++ G ++G Sbjct: 69 DPIEQSYFLEVSSPGLDRPLKKESDFERFKGELVEVKVFKPIDGRKIFEGNLLG 122 >gi|121998530|ref|YP_001003317.1| hypothetical protein Hhal_1751 [Halorhodospira halophila SL1] gi|166980218|sp|A1WXV3|RIMP_HALHL RecName: Full=Ribosome maturation factor rimP gi|121589935|gb|ABM62515.1| protein of unknown function DUF150 [Halorhodospira halophila SL1] Length = 151 Score = 74.7 bits (182), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 87/149 (58%), Gaps = 9/149 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + S+++P + + + V + L K N L+++++ G + L DCE +S +S +LDVE Sbjct: 7 LHSLLEPTVTGLGYELVGVELTGAKGNRTLRVYIDTPAG-IRLEDCEAVSHQVSGLLDVE 65 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + IEG Y LEVSSPG+DRP+ + +D+ R++G + ++ ++++ G ++G Sbjct: 66 DPIEGAYNLEVSSPGLDRPIFKSADYDRFSGERIKLRLLELYEGRRRVKGVLLG------ 119 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 L+ E +D++ +++ I + + ARL Sbjct: 120 -LDGEFVRVRDVDGVELRIPLELIDRARL 147 >gi|309389229|gb|ADO77109.1| protein of unknown function DUF150 [Halanaerobium praevalens DSM 2228] Length = 155 Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 72/114 (63%), Gaps = 1/114 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 +A ++ + P+ + + + + L+E + +L+IF+E +G +T+ +CE++S+++S I Sbjct: 7 VAETVTDFVLPIAQSENLNLIDVEFLKEGSDWILRIFLENKNGELTIEECEKVSRSLSMI 66 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 LD E+ I+ Y LEVSSPG++RP+ + DF R+ G ++A + +++ +G Sbjct: 67 LDEEDPIDKSYILEVSSPGLERPLKTEEDFERFKGELIAVKTFKKIEGQKEFVG 120 >gi|254787151|ref|YP_003074580.1| hypothetical protein TERTU_3219 [Teredinibacter turnerae T7901] gi|259645124|sp|C5BPW1|RIMP_TERTT RecName: Full=Ribosome maturation factor rimP gi|237686402|gb|ACR13666.1| conserved hypothetical protein [Teredinibacter turnerae T7901] Length = 152 Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 75/129 (58%), Gaps = 3/129 (2%) Query: 20 GLAGDISSVIQPVIE--EMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 G + +I PV+E E ++ S+ + + +L+IF+++ + + DCE++S+ +S Sbjct: 3 GKHTQLEELIAPVVESLECELWGLEYSV-QGRRSMLRIFIDKQPDGVLVEDCEKVSRQVS 61 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I G Y LEVSSPG+DRP+ + + F + GH VA + ++ ++K G + G Sbjct: 62 SVLDVEDPISGEYTLEVSSPGMDRPLFKLAHFELYVGHRVALRLRVAFEGRRKFQGLLKG 121 Query: 138 TSETGFFLE 146 + LE Sbjct: 122 IEDGEIVLE 130 >gi|157825876|ref|YP_001493596.1| hypothetical protein A1C_04075 [Rickettsia akari str. Hartford] gi|166979960|sp|A8GNW3|RIMP_RICAH RecName: Full=Ribosome maturation factor rimP gi|157799834|gb|ABV75088.1| hypothetical protein A1C_04075 [Rickettsia akari str. Hartford] Length = 166 Score = 74.3 bits (181), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 90/160 (56%), Gaps = 9/160 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDG-NMTLRDCEELSQAISPILDVE 83 I++VI+ + +M F V I + +++I ++ +G +++ DC + S IS ILDVE Sbjct: 8 ITNVIEKSLTDMGFELVLIKFKGVNHKVVEILIDSLNGEKISVADCTKASSTISAILDVE 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 ++IE Y LEV+S G++RP+V+ ++ R+ G V ++ K + GKI+ Sbjct: 68 DLIEDAYSLEVASSGLERPLVKFENYNRFLGREVKVKLKELLNGKTRYQGKIIKAENNKV 127 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 +L+ E + ++ I +D + +A L++T+E+L+ L Sbjct: 128 YLKCEAQ--------EVLIDYDLIKNANLVLTEEVLKKLL 159 >gi|162454077|ref|YP_001616444.1| hypothetical protein sce5801 [Sorangium cellulosum 'So ce 56'] gi|259586198|sp|A9G896|RIMP_SORC5 RecName: Full=Ribosome maturation factor rimP gi|161164659|emb|CAN95964.1| hypothetical protein sce5801 [Sorangium cellulosum 'So ce 56'] Length = 208 Score = 74.3 bits (181), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 84/158 (53%), Gaps = 15/158 (9%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDD-----GNMTLRDCEELSQAI 76 G + + PV+ V + + E+ L++ +ER++ G +TL DC ++S+ + Sbjct: 12 GRVRDAVAPVLASHGVTLVDLEWITERAGWTLRLTIERENADDAGGGVTLEDCADVSRDV 71 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI-GKI 135 S +LDVE++I HY LEVSSPG+DR + ++F R+ G ++ + D Q+L+ G++ Sbjct: 72 SSVLDVEDLIPNHYNLEVSSPGLDRRLRTAAEFARFLGRTAKVKLARPAPDGQRLLRGEL 131 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E + ++ +IA+ F + ARL+ Sbjct: 132 LEAPEGQVAVL--------VDGKRIAVPFADVAEARLV 161 >gi|218665765|ref|YP_002424885.1| lipoprotein, putative [Acidithiobacillus ferrooxidans ATCC 23270] gi|259585659|sp|B7J4D2|RIMP_ACIF2 RecName: Full=Ribosome maturation factor rimP gi|218517978|gb|ACK78564.1| lipoprotein, putative [Acidithiobacillus ferrooxidans ATCC 23270] Length = 150 Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 42/126 (33%), Positives = 70/126 (55%), Gaps = 9/126 (7%) Query: 49 KNLLLQIFVERDDGN-MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKS 107 + + LQ+F+E+D+ +T+ DC +S+ +S LDVEN I G YRLEVSSPG+DRP+ Sbjct: 30 RAVALQVFIEKDETTAVTIEDCAAVSRQLSLWLDVENPIHGAYRLEVSSPGLDRPLKNLH 89 Query: 108 DFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSL 167 DF R+ G + + +++L G+++G + L+ E + + D + Sbjct: 90 DFERFKGSQAEIHLHGLTQGRRRLQGELLGVEDQKIVLKN--------AEGRWTFALDDI 141 Query: 168 LSARLI 173 ARL+ Sbjct: 142 HKARLV 147 >gi|198282693|ref|YP_002219014.1| hypothetical protein Lferr_0553 [Acidithiobacillus ferrooxidans ATCC 53993] gi|259585660|sp|B5EMC8|RIMP_ACIF5 RecName: Full=Ribosome maturation factor rimP gi|198247214|gb|ACH82807.1| protein of unknown function DUF150 [Acidithiobacillus ferrooxidans ATCC 53993] Length = 153 Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 42/126 (33%), Positives = 70/126 (55%), Gaps = 9/126 (7%) Query: 49 KNLLLQIFVERDDGN-MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKS 107 + + LQ+F+E+D+ +T+ DC +S+ +S LDVEN I G YRLEVSSPG+DRP+ Sbjct: 33 RAVALQVFIEKDETTAVTIEDCAAVSRQLSLWLDVENPIHGAYRLEVSSPGLDRPLKNLH 92 Query: 108 DFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSL 167 DF R+ G + + +++L G+++G + L+ E + + D + Sbjct: 93 DFERFKGSQAEIHLHGLTQGRRRLQGELLGVEDQKIVLKNA--------EGRWTFALDDI 144 Query: 168 LSARLI 173 ARL+ Sbjct: 145 HKARLV 150 >gi|39996685|ref|NP_952636.1| hypothetical protein GSU1585 [Geobacter sulfurreducens PCA] gi|81702398|sp|Q74CT6|RIMP_GEOSL RecName: Full=Ribosome maturation factor rimP gi|39983566|gb|AAR34959.1| conserved hypothetical protein [Geobacter sulfurreducens PCA] gi|298505696|gb|ADI84419.1| protein of unknown function DUF150 [Geobacter sulfurreducens KN400] Length = 159 Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 79/126 (62%), Gaps = 7/126 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 +AG I++V + V+ V++ E + ++L++FV++ G ++L DC +S+ +S I Sbjct: 6 VAGRITAVAEQVLTPQGLELVEVEYKREGRQMVLRLFVDKP-GGISLDDCAAVSRELSEI 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE----IVLSSGDKQK-LIGK 134 LDVE+ I +Y LEVSSPG++RP+ +++D+ R+ G +V + G+++K +G Sbjct: 65 LDVEDFIRENYTLEVSSPGLNRPLKKEADYERYAGRLVKVRTFELLADEEGNRRKTFLGD 124 Query: 135 IMGTSE 140 ++G S+ Sbjct: 125 LVGLSD 130 >gi|169831085|ref|YP_001717067.1| hypothetical protein Daud_0922 [Candidatus Desulforudis audaxviator MP104C] gi|226696028|sp|B1I359|RIMP_DESAP RecName: Full=Ribosome maturation factor rimP gi|169637929|gb|ACA59435.1| protein of unknown function DUF150 [Candidatus Desulforudis audaxviator MP104C] Length = 154 Score = 73.9 bits (180), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 82/156 (52%), Gaps = 11/156 (7%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 +AG + + +P+ E V++ + E L++F+++ G + L DCE +S+ + Sbjct: 6 IAGRVEEMARPLAERKGLELVEVQYVTEGGRRYLRVFLDKP-GGINLDDCEAVSRELDRA 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + I Y LEVSSPG++RP+ R D++R+ G +V ++K G++MG+ Sbjct: 65 LDDVDFIPHSYVLEVSSPGLERPLKRAEDYVRFKGRLVQINTYAPLNGRKKFSGRLMGSG 124 Query: 140 ETGFFLEKEKRGEKDMNELQIA-ISFDSLLSARLIV 174 E G + + E ++A I +D + ARL V Sbjct: 125 EEGVTIL--------LGEHELATIPWDQISKARLAV 152 >gi|110833188|ref|YP_692047.1| hypothetical protein ABO_0327 [Alcanivorax borkumensis SK2] gi|110646299|emb|CAL15775.1| conserved hypothetical protein [Alcanivorax borkumensis SK2] Length = 181 Score = 73.9 bits (180), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 69/114 (60%), Gaps = 1/114 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ ++ PV+E++ F + ++ + +L++F++ DG +++ DC +S +S +LDVE+ Sbjct: 38 LTELLAPVVEDLGFVLWGVEYIQGRGAVLRVFIDHADG-ISVDDCAAVSHEVSGVLDVED 96 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 I G + LEVSSPG+DRPM + ++ + G V +++ K+K+ I+ Sbjct: 97 PIPGEFNLEVSSPGMDRPMFDITQYVDYIGEDVQLKLLAPVSGKRKMTAAIVAV 150 >gi|163782300|ref|ZP_02177298.1| hypothetical protein HG1285_05920 [Hydrogenivirga sp. 128-5-R1-1] gi|159882333|gb|EDP75839.1| hypothetical protein HG1285_05920 [Hydrogenivirga sp. 128-5-R1-1] Length = 157 Score = 73.9 bits (180), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 80/148 (54%), Gaps = 7/148 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 I +++P+I+ M +R + E+ +L++ +++ G +T+RDCEE+S+ IS +LDVE+ Sbjct: 12 IKELVEPLIKGMGYRLFDVEFKPERGWVLRVIIDKP-GGVTIRDCEEVSKKISGLLDVED 70 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 II Y LE+SSPG+ R + + + + G +V + K++ G + E Sbjct: 71 IIPFSYMLEISSPGLTRELEKPEHYDFFKGRLVKVVLREPVSGKREATGYVESVREGIIT 130 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARL 172 L + ++GE + I F ++ RL Sbjct: 131 LREREKGE------ALHIPFSAIAKGRL 152 >gi|85860523|ref|YP_462725.1| hypothetical protein SYN_01790 [Syntrophus aciditrophicus SB] gi|123517502|sp|Q2LWU4|RIMP_SYNAS RecName: Full=Ribosome maturation factor rimP gi|85723614|gb|ABC78557.1| hypothetical protein SYN_01790 [Syntrophus aciditrophicus SB] Length = 160 Score = 73.9 bits (180), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 41/102 (40%), Positives = 62/102 (60%), Gaps = 6/102 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L DI + +PVI V++ L K L++I+++R+ G +TL DC E+S + + Sbjct: 9 LREDIWQLAEPVIASEGLELVEVECLRMKTRWLVRIYMDRE-GGVTLDDCSEISNQLGDV 67 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 LDV ++ Y LEVSSPG+DRP+VR DF+R+ G CE+ Sbjct: 68 LDVHDLPPDPYTLEVSSPGLDRPLVRDKDFVRYQG----CEV 105 >gi|118602110|ref|YP_903325.1| hypothetical protein Rmag_0052 [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|166919103|sp|A1AV97|RIMP_RUTMC RecName: Full=Ribosome maturation factor rimP gi|118567049|gb|ABL01854.1| protein of unknown function DUF150 [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 154 Score = 73.9 bits (180), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 68/118 (57%), Gaps = 1/118 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I+ +I+ VI++M + V I + K+ +L++F++ D + + DCE++S+ +S I DVE Sbjct: 8 ITHLIELVIKDMCYELVGIEYVASGKHSILRVFIDTDKKGVGVNDCEKVSRQLSSIFDVE 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 I G Y LEVSSPGI+RP+ K + R+ G V +V ++ G I +E Sbjct: 68 EPISGQYTLEVSSPGIERPLFHKEHYQRFLGANVKLRMVRPIDGRRNFFGVIGCVNEA 125 >gi|86157526|ref|YP_464311.1| hypothetical protein Adeh_1099 [Anaeromyxobacter dehalogenans 2CP-C] gi|123499926|sp|Q2IPZ0|RIMP_ANADE RecName: Full=Ribosome maturation factor rimP gi|85774037|gb|ABC80874.1| hypothetical protein Adeh_1099 [Anaeromyxobacter dehalogenans 2CP-C] Length = 171 Score = 73.9 bits (180), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 68/125 (54%), Gaps = 12/125 (9%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 G+ +A + S+++PV+E + V++ L++F+++ G + + DC+ +S+ Sbjct: 4 IGEQSIAEQVRSLLEPVLERDGYELVEVEWARLAGRWTLRVFIDKA-GGVGIDDCQAVSK 62 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 + PILDV + IE Y LEVSSPG+DRP+ + DF R+ G V K G Sbjct: 63 TVEPILDVADFIEPAYDLEVSSPGLDRPLRKPRDFDRYAGQRVHV----------KAYGP 112 Query: 135 IMGTS 139 + GT+ Sbjct: 113 VAGTA 117 >gi|254427945|ref|ZP_05041652.1| conserved hypothetical protein [Alcanivorax sp. DG881] gi|196194114|gb|EDX89073.1| conserved hypothetical protein [Alcanivorax sp. DG881] Length = 151 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 71/122 (58%), Gaps = 1/122 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ ++ PV+E++ F + ++ + +L++F++ DG +++ +C +S +S +LDVE+ Sbjct: 8 LTELLAPVVEDLGFVLWGVEYIQGRGAVLRVFIDHADG-ISVDNCAAVSHEVSGVLDVED 66 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I G Y LEVSSPG+DRPM + ++ + G V +++ K+K+ I+ Sbjct: 67 PISGEYNLEVSSPGMDRPMFEIAQYVDYIGEDVQLKLLAPVSGKRKMTAAIVAVDGDTLV 126 Query: 145 LE 146 +E Sbjct: 127 VE 128 >gi|259585829|sp|B3PI94|RIMP_CELJU RecName: Full=Ribosome maturation factor rimP Length = 164 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 71/123 (57%), Gaps = 2/123 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I PV+E + + L + + L+IF++ G ++L DCE +S+ IS +LDVE Sbjct: 8 LTDLIVPVVESLGCELWGLEYLTQGRYTTLRIFIDGPQG-VSLDDCERVSRQISAVLDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I+G Y LEVSSPG+DRP+ ++ + R+ G V + ++ +++ G I E Sbjct: 67 DPIDGEYTLEVSSPGLDRPLYTEAQYARYVGETVNLRLRIAVEGRRRFKGVISAIEEGAL 126 Query: 144 FLE 146 L+ Sbjct: 127 LLQ 129 >gi|220927906|ref|YP_002504815.1| hypothetical protein Ccel_0453 [Clostridium cellulolyticum H10] gi|254803925|sp|B8I6E3|RIMP_CLOCE RecName: Full=Ribosome maturation factor rimP gi|219998234|gb|ACL74835.1| protein of unknown function DUF150 [Clostridium cellulolyticum H10] Length = 152 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 74/118 (62%), Gaps = 2/118 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ ++ PV+E +++ V I ++E N L++++++ G +++ DC+ +S+ +S +LD + Sbjct: 9 VTELVSPVVESLNYELVDIEYVKEGANWYLRVYIDKP-GGISIDDCQAVSEQVSDLLDKD 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + I+ Y LEVSSPG+DRP+ + DF ++ G +V ++ K+ G+++G + Sbjct: 68 DPIDQSYFLEVSSPGLDRPLKTEKDFAKYKGELVEVKVFQPIDGKKIFEGELVGLKDN 125 >gi|119713530|gb|ABL97583.1| hypothetical protein MBMO_EB0-35D03.0046 [uncultured marine bacterium EB0_35D03] Length = 153 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 71/122 (58%), Gaps = 2/122 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 +A + S+I P I ++ + + + + K+ +L+++++ + G + + DCE +S+ +S I Sbjct: 4 IADKLFSIINPSINDLGYELLGVEYVSSGKHSVLRLYIDSEKG-IGVDDCETVSRQVSAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +DVE+ I G Y LEVSSPGI+RP+ + + + R+ GH V ++ G I S Sbjct: 63 MDVEDPISGQYNLEVSSPGIERPLFKVAHYQRFLGHDVRLRTYRPLDGRRNFTGAIGSVS 122 Query: 140 ET 141 ET Sbjct: 123 ET 124 >gi|307825108|ref|ZP_07655329.1| protein of unknown function DUF150 [Methylobacter tundripaludum SV96] gi|307733856|gb|EFO04712.1| protein of unknown function DUF150 [Methylobacter tundripaludum SV96] Length = 161 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 82/148 (55%), Gaps = 5/148 (3%) Query: 27 SVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENI 85 ++I+P++E + + V I K+ LL+I+++ D+G + + DC ++S IS ++DVE+ Sbjct: 10 NLIEPIVEGLGYECVGIEYNPHPKHGLLRIYIDSDNG-ILVEDCTKVSHQISGVMDVEDP 68 Query: 86 IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFL 145 I G+Y LE+SSPG DRP + S F R+ G V + + ++K+ G I + L Sbjct: 69 ILGNYHLEISSPGEDRPFFKVSQFERYIGSTVLVHLFKAIDGRRKITGLIEKVEDDIITL 128 Query: 146 EKEKRGEKDMNELQIAISFDSLLSARLI 173 K GE+ IA+S L+ LI Sbjct: 129 ---KDGEQVFEVPFIAMSKARLVPEYLI 153 >gi|259585706|sp|Q0VSS3|RIMP_ALCBS RecName: Full=Ribosome maturation factor rimP Length = 151 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 71/122 (58%), Gaps = 1/122 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ ++ PV+E++ F + ++ + +L++F++ DG +++ DC +S +S +LDVE+ Sbjct: 8 LTELLAPVVEDLGFVLWGVEYIQGRGAVLRVFIDHADG-ISVDDCAAVSHEVSGVLDVED 66 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I G + LEVSSPG+DRPM + ++ + G V +++ K+K+ I+ Sbjct: 67 PIPGEFNLEVSSPGMDRPMFDITQYVDYIGEDVQLKLLAPVSGKRKMTAAIVAVDGDTLV 126 Query: 145 LE 146 +E Sbjct: 127 VE 128 >gi|258645577|ref|ZP_05733046.1| hypothetical protein GCWU000321_00427 [Dialister invisus DSM 15470] gi|260402935|gb|EEW96482.1| hypothetical protein GCWU000321_00427 [Dialister invisus DSM 15470] Length = 156 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 63/94 (67%), Gaps = 1/94 (1%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +++P ++++ + + + E+N +L++F++++DG + L DC+++S+ +LD ++I Sbjct: 13 LLEPALKQLGIELIDVEYVRERNWILRVFIDKEDG-VDLNDCQQISEKAGELLDEADLIS 71 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 +Y LEVSSPG+DR + + DFLR+ G V ++ Sbjct: 72 ANYMLEVSSPGLDRVLKKDKDFLRYAGEEVDVKL 105 >gi|302872116|ref|YP_003840752.1| hypothetical protein COB47_1477 [Caldicellulosiruptor obsidiansis OB47] gi|302574975|gb|ADL42766.1| protein of unknown function DUF150 [Caldicellulosiruptor obsidiansis OB47] Length = 151 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 87/149 (58%), Gaps = 6/149 (4%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + +++P++E F V I +E K+ L++++++ G +T+ DC+ +S+ +S Sbjct: 4 ITKKVEELVKPILERYGFDLVDIEFKKEGKSHFLRVYIDKP-GGITIDDCQLVSEELSDK 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD+ + I Y LEVSSPG+DRP+V DF+R G VV + ++ K+ G+++ + Sbjct: 63 LDIADPIPFSYYLEVSSPGVDRPLVTDRDFIRNKGRVVDVFLKQPFLNRTKITGELVEKN 122 Query: 140 ETGFFL--EKEKRG--EKDMNELQIAISF 164 E L +KEK +++ ++++AI F Sbjct: 123 EKSLVLIVDKEKIDIPVENVKKVKLAIRF 151 >gi|220916333|ref|YP_002491637.1| protein of unknown function DUF150 [Anaeromyxobacter dehalogenans 2CP-1] gi|259585694|sp|B8JFY3|RIMP_ANAD2 RecName: Full=Ribosome maturation factor rimP gi|219954187|gb|ACL64571.1| protein of unknown function DUF150 [Anaeromyxobacter dehalogenans 2CP-1] Length = 171 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 68/125 (54%), Gaps = 12/125 (9%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 G+ +A + +++PV+E + V++ L++F+++ G + + DC+ +S+ Sbjct: 4 IGEQSIAEQVRRLLEPVLERDGYELVEVEWARLAGRWTLRVFIDKA-GGVGIDDCQAVSK 62 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 + PILDV ++IE Y LEVSSPG+DRP+ + DF R+ G V K G Sbjct: 63 TVEPILDVADVIEPAYDLEVSSPGLDRPLRKPGDFDRYAGQRVHV----------KAYGP 112 Query: 135 IMGTS 139 + GT+ Sbjct: 113 VAGTA 117 >gi|210622609|ref|ZP_03293269.1| hypothetical protein CLOHIR_01217 [Clostridium hiranonis DSM 13275] gi|210154110|gb|EEA85116.1| hypothetical protein CLOHIR_01217 [Clostridium hiranonis DSM 13275] Length = 154 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 84/146 (57%), Gaps = 7/146 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ + +E + +V + ++E L++ V+++ G ++L +CEE+S+ +SP LD Sbjct: 10 VEKMVTAITDEKGYETVDVEYVKEAGQFYLRVVVDKE-GGISLNECEEVSRELSPKLDEN 68 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + IE +Y LEVSSPGIDR + R +F+++ G V ++ + ++ G+++G E Sbjct: 69 DFIEENYYLEVSSPGIDRALKRDKEFVKYKGRDVEIKLYKAIDGVKQFEGELVGLDEENN 128 Query: 144 FL-----EKEKRGEKDMNELQIAISF 164 + E+ K KD+ +++AI F Sbjct: 129 IVVIINNEEMKFNRKDVAIIRLAIKF 154 >gi|188586066|ref|YP_001917611.1| protein of unknown function DUF150 [Natranaerobius thermophilus JW/NM-WN-LF] gi|226734162|sp|B2A393|RIMP_NATTJ RecName: Full=Ribosome maturation factor rimP gi|179350753|gb|ACB85023.1| protein of unknown function DUF150 [Natranaerobius thermophilus JW/NM-WN-LF] Length = 154 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 80/151 (52%), Gaps = 9/151 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I ++I+P + ++ + V + L +E + +L+++++ G + L DCE +S ++ +LD Sbjct: 10 IENIIEPAVRDLGYDLVDVELIMENQKWVLRVYIDHGKG-IGLDDCELVSNSLDQLLDEH 68 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I Y LEVSSPG +RP+ +K DF+ + G V + + ++ GK++G + Sbjct: 69 DPIPHSYVLEVSSPGAERPLKKKKDFVNFAGKKVQIKTYVKLDGRKNFKGKLLGLEDEHV 128 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 LE GE + I D + A L++ Sbjct: 129 VLETFNSGE-------VKIPLDKIAKANLLL 152 >gi|192362188|ref|YP_001980957.1| BCR family protein [Cellvibrio japonicus Ueda107] gi|190688353|gb|ACE86031.1| Uncharacterized BCR, YhbC family [Cellvibrio japonicus Ueda107] Length = 196 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 71/123 (57%), Gaps = 2/123 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I PV+E + + L + + L+IF++ G ++L DCE +S+ IS +LDVE Sbjct: 40 LTDLIVPVVESLGCELWGLEYLTQGRYTTLRIFIDGPQG-VSLDDCERVSRQISAVLDVE 98 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I+G Y LEVSSPG+DRP+ ++ + R+ G V + ++ +++ G I E Sbjct: 99 DPIDGEYTLEVSSPGLDRPLYTEAQYARYVGETVNLRLRIAVEGRRRFKGVISAIEEGAL 158 Query: 144 FLE 146 L+ Sbjct: 159 LLQ 161 >gi|312143667|ref|YP_003995113.1| protein of unknown function DUF150 [Halanaerobium sp. 'sapolanicus'] gi|311904318|gb|ADQ14759.1| protein of unknown function DUF150 [Halanaerobium sp. 'sapolanicus'] Length = 156 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 71/117 (60%), Gaps = 2/117 (1%) Query: 19 MGLAGD-ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAI 76 +G D ++ + P+ + V + L+E + +L++F+E +G +T+ +CE +S+A+ Sbjct: 4 LGKVADLVTEFVLPIAHNENLNLVDVEFLKEGSDWILRVFLENKEGELTIEECERVSRAL 63 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 S ILD E+ I+ Y LEVSSPG++RP+ + DF R+ G +++ + +++ IG Sbjct: 64 SVILDEEDPIDKSYILEVSSPGLERPLKTEEDFERFQGELISVKTFKKIDGQKEFIG 120 >gi|326204062|ref|ZP_08193923.1| protein of unknown function DUF150 [Clostridium papyrosolvens DSM 2782] gi|325985829|gb|EGD46664.1| protein of unknown function DUF150 [Clostridium papyrosolvens DSM 2782] Length = 152 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 72/114 (63%), Gaps = 2/114 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ ++ PV+E +++ V + ++E N L++++++ G +++ DC+ +S+ +S +LD Sbjct: 9 VTELVSPVVENLNYELVDVEYVKEGANWYLRVYIDKP-GGISIDDCQAVSEQVSELLDKN 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 + I+ Y LEVSSPG+DRP+ + DF ++ G +V ++ K+ G+++G Sbjct: 68 DPIDQSYYLEVSSPGLDRPLKTEKDFTKYKGELVEVKVFQPIDGKKIFEGELVG 121 >gi|260771175|ref|ZP_05880102.1| UPF0090 domain-containing protein [Vibrio furnissii CIP 102972] gi|260613772|gb|EEX38964.1| UPF0090 domain-containing protein [Vibrio furnissii CIP 102972] gi|315179219|gb|ADT86133.1| hypothetical protein vfu_A00938 [Vibrio furnissii NCTC 11218] Length = 151 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 61/86 (70%), Gaps = 1/86 (1%) Query: 53 LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRW 112 L+I+++ ++G +T+ DC E+S +S +LDVE+ I Y LEVSSPG++RP+ + + + ++ Sbjct: 37 LRIYIDHENG-ITVDDCAEVSHQVSAVLDVEDPITVAYNLEVSSPGLERPLFKAAHYEQF 95 Query: 113 NGHVVACEIVLSSGDKQKLIGKIMGT 138 GH V+ + ++ G+++K G+I+G Sbjct: 96 KGHEVSIVLKMAVGNRRKWKGEILGA 121 >gi|118579396|ref|YP_900646.1| hypothetical protein Ppro_0960 [Pelobacter propionicus DSM 2379] gi|259586175|sp|A1AML8|RIMP_PELPD RecName: Full=Ribosome maturation factor rimP gi|118502106|gb|ABK98588.1| protein of unknown function DUF150 [Pelobacter propionicus DSM 2379] Length = 161 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 65/94 (69%), Gaps = 2/94 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I ++ PVI+ M+ V++ + +L++F++++ G +TL DC +LS+ +S +LDVE Sbjct: 12 IRTLALPVIDSMNLELVEVEYKRSGREAVLRLFIDKE-GGVTLDDCADLSRELSTLLDVE 70 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 ++I Y LEVSSPG+DRP+ ++D+ R++G ++ Sbjct: 71 DLIPCEYSLEVSSPGLDRPLKSEADYERFSGRLI 104 >gi|195953995|ref|YP_002122285.1| protein of unknown function DUF150 [Hydrogenobaculum sp. Y04AAS1] gi|226736378|sp|B4U6H1|RIMP_HYDS0 RecName: Full=Ribosome maturation factor rimP gi|195933607|gb|ACG58307.1| protein of unknown function DUF150 [Hydrogenobaculum sp. Y04AAS1] Length = 154 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 78/154 (50%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 +A + +++P+ + + FR + E +L+I ++++ G +T+ DCEELS+ +S +L Sbjct: 7 IATTVKDLVKPISDNLGFRLFDVEFKPENGWVLRIIIDKE-GGVTIDDCEELSKRVSALL 65 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE++I Y LEVSSPG+ R + K + + G + +KQ+ G I + Sbjct: 66 DVEDVITSSYFLEVSSPGLTRELKEKWHYEFFKGKYARLYLKEKIDNKQEYAGYIDSVED 125 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L + + + I FD + ARL V Sbjct: 126 DTLVLR--------LLDKTLKIPFDKIAKARLDV 151 >gi|312127898|ref|YP_003992772.1| hypothetical protein Calhy_1688 [Caldicellulosiruptor hydrothermalis 108] gi|311777917|gb|ADQ07403.1| protein of unknown function DUF150 [Caldicellulosiruptor hydrothermalis 108] Length = 151 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 87/149 (58%), Gaps = 6/149 (4%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + +++P++E F V I +E K+ L++++++ G +T+ DC+ +S+ +S Sbjct: 4 ITKKVEELVKPILERYGFDLVDIEFKKEGKSYFLRVYIDKP-GGITIDDCQLVSEELSEK 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD+ + I Y LEVSSPG+DRP+V DF+R G VV + ++ K+ G+++ + Sbjct: 63 LDIVDPIPFSYYLEVSSPGVDRPLVTDRDFVRNRGRVVDVFLNQPFLNRTKITGELVEKN 122 Query: 140 ETGFFL--EKEKRG--EKDMNELQIAISF 164 E L +KEK +++ ++++AI F Sbjct: 123 EKSLVLIVDKEKIDIPVENIKKVKLAIRF 151 >gi|217967592|ref|YP_002353098.1| protein of unknown function DUF150 [Dictyoglomus turgidum DSM 6724] gi|259585754|sp|B8E2Y4|RIMP_DICTD RecName: Full=Ribosome maturation factor rimP gi|217336691|gb|ACK42484.1| protein of unknown function DUF150 [Dictyoglomus turgidum DSM 6724] Length = 156 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 73/129 (56%), Gaps = 2/129 (1%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 M L + +++P+ E+ S+ V + E + +L++++++ G +T+ DC +S+ IS Sbjct: 7 MELLKKLKDIVEPICEKYSYELVDLEYRREPHGWVLRVYIDKV-GGVTVEDCAYISEKIS 65 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD+++ I Y LEVSSPG+DRP+ RK DF R G V ++ K+K+ GKI Sbjct: 66 KELDIKDPIPHSYILEVSSPGLDRPLKRKRDFERHIGEKVNITLLEEIEGKKKVEGKIFK 125 Query: 138 TSETGFFLE 146 E L+ Sbjct: 126 VDEKNVTLK 134 >gi|90416133|ref|ZP_01224065.1| hypothetical protein GB2207_10663 [marine gamma proteobacterium HTCC2207] gi|90331858|gb|EAS47072.1| hypothetical protein GB2207_10663 [marine gamma proteobacterium HTCC2207] Length = 151 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 70/115 (60%), Gaps = 2/115 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +++QPV+E + + L K LL+I+++R+DG + + DCE +S+ +LDVE Sbjct: 8 LKALLQPVVEALDCELWGLELQSGGKRKLLRIYIDREDG-IGVEDCERVSRQSGSVLDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 ++I G Y LEVSSPG+DRP+ + + R+ G V+ + + ++ G+++G Sbjct: 67 DVISGEYILEVSSPGMDRPLYELAQYERYIGEDVSLRLRFAYDGRRNFKGRLVGV 121 >gi|260893512|ref|YP_003239609.1| protein of unknown function DUF150 [Ammonifex degensii KC4] gi|260865653|gb|ACX52759.1| protein of unknown function DUF150 [Ammonifex degensii KC4] Length = 161 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 71/127 (55%), Gaps = 2/127 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 +S + +P+ E + V + +E +L++F+++ G +TL DCE LS+A+ LDVE Sbjct: 11 VSRLAEPLAERLGLELVDVEYKKEGGRWVLRVFIDKPSG-VTLDDCEALSEALGEALDVE 69 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I Y LEVSSPG++RP+ + + F R+ G V + +++ G ++ E G Sbjct: 70 DPIPHSYSLEVSSPGVERPLKKPAHFQRFVGREVRVSTLAPVEGQRRFTGVLLAADEEGI 129 Query: 144 FLEKEKR 150 LE + + Sbjct: 130 RLETDGK 136 >gi|257468348|ref|ZP_05632442.1| putative cytoplasmic protein [Fusobacterium ulcerans ATCC 49185] gi|317062621|ref|ZP_07927106.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] gi|313688297|gb|EFS25132.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] Length = 159 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 77/150 (51%), Gaps = 10/150 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I +++ PV+ EM V I L++ ++I+VE +G++TL DC +S I D++ Sbjct: 13 IETIVTPVVNEMELSLVDIEYLQDGGYWYVRIYVENPEGDITLEDCAAISNKIDE--DID 70 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +IE + LEVSSPGI+RP+ + D++R+ G + D + G I ++ Sbjct: 71 KLIEQRFFLEVSSPGIERPLKKIEDYIRFKGEKAKLSLKHKVDDNKNFEGIITDCKDSII 130 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLI 173 +LE E +E + I F + A L+ Sbjct: 131 YLELE-------DEKVMEIPFSEVRKANLV 153 >gi|289548940|ref|YP_003473928.1| hypothetical protein Thal_1169 [Thermocrinis albus DSM 14484] gi|289182557|gb|ADC89801.1| protein of unknown function DUF150 [Thermocrinis albus DSM 14484] Length = 157 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 81/140 (57%), Gaps = 7/140 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + ++ P++++M +R + E+ +L+I ++++ G +T+ DCEE+S+ +S +LDVE+ Sbjct: 12 VKELVTPLVKKMGYRLFDVEFKPERGWVLRIILDKE-GGITIGDCEEVSRKVSALLDVED 70 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 II Y LEVSSPG++R + + F + G +V + ++++ G I G +E Sbjct: 71 IIPFSYMLEVSSPGLNRELTKPEHFEFFEGRLVRVILRQPVEGRREIKGYIRGVTEGVLK 130 Query: 145 LEKEKRGEKD-MNELQIAIS 163 LE EKD N L + +S Sbjct: 131 LE-----EKDSRNILHVPLS 145 >gi|94501386|ref|ZP_01307906.1| hypothetical protein RED65_04750 [Oceanobacter sp. RED65] gi|94426499|gb|EAT11487.1| hypothetical protein RED65_04750 [Oceanobacter sp. RED65] Length = 175 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 70/114 (61%), Gaps = 2/114 (1%) Query: 28 VIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 ++QPV+E M + + + + K+ LL+IF++ ++G + + DC +S+ +S ++DVE+ I Sbjct: 30 LLQPVVEAMGYEFWGLEYIAKGKDSLLRIFIDGENG-VNVDDCAAVSRQVSGVMDVEDPI 88 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 Y LEVSSPG+DRP+ F R+ G V ++ + ++K GK++G + Sbjct: 89 TSEYNLEVSSPGLDRPLFTLEHFERYVGEFVDIKLRYAFEGRRKFKGKLVGIED 142 >gi|311695960|gb|ADP98833.1| protein belonging to uncharacterized protein family UPF0090 [marine bacterium HP15] Length = 153 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 68/115 (59%), Gaps = 1/115 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++QPV+E + + I + + LL++F++ + + + DCE++S+ IS ++DVE Sbjct: 8 LEDILQPVVEGLGYEFWGIEFRSQGHHSLLRVFIDDAENGIGVDDCEKVSRQISGVMDVE 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 + I+ Y LEVSSPG+DRP+ R + + GH V + ++ ++K G I G Sbjct: 68 DPIQTEYTLEVSSPGMDRPLFRLEQYEAFVGHQVQIRLRMAFEGRRKFQGLIKGV 122 >gi|302392349|ref|YP_003828169.1| hypothetical protein Acear_1598 [Acetohalobium arabaticum DSM 5501] gi|302204426|gb|ADL13104.1| protein of unknown function DUF150 [Acetohalobium arabaticum DSM 5501] Length = 153 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 71/117 (60%), Gaps = 2/117 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 +A I + +P++E+ V +E ++ +++FV++ +G +TL DC+++S+ IS Sbjct: 5 IADYIFDLARPIVEDHGLELVDTEYQKEGQDWTVRVFVDKPEG-VTLDDCQKISREISDR 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 LD+E+ IE Y LEVSSPG+DRP+ + DF R+ GH++ ++ G+++ Sbjct: 64 LDIEDPIEKSYILEVSSPGLDRPLKDEEDFKRFTGHLIDVSTYAPVNGEKSFTGELL 120 >gi|149185834|ref|ZP_01864149.1| hypothetical protein ED21_23911 [Erythrobacter sp. SD-21] gi|148830395|gb|EDL48831.1| hypothetical protein ED21_23911 [Erythrobacter sp. SD-21] Length = 185 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 89/176 (50%), Gaps = 19/176 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK----NLLLQIFVERD-DGNMTLRDCEELSQAISPI 79 ++ VI+P + + F V++ ++ + + LQI E G + + C LS+ +S + Sbjct: 7 LTEVIEPEAQALGFELVRVKMVPSEAGDGGMALQIMAEDPATGQLVIEQCAALSRRVSDM 66 Query: 80 LDV-----ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 LD E ++ G Y LEVSSPGIDRP+ R DF W GH + + + G+ Sbjct: 67 LDQLEEQGEVLVPGAYHLEVSSPGIDRPLTRAKDFENWAGHEAKIALTEKVHGYRTVKGE 126 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS--LNNYGS 188 + G G + + G K +++ + + SA+L++TDEL+ A+ L+ G+ Sbjct: 127 LKGID--GDMVTVDIPGAK-----EVSFPRNLIHSAKLVLTDELIAATQPLDTSGA 175 >gi|312793235|ref|YP_004026158.1| hypothetical protein Calkr_1037 [Caldicellulosiruptor kristjanssonii 177R1B] gi|312876953|ref|ZP_07736928.1| protein of unknown function DUF150 [Caldicellulosiruptor lactoaceticus 6A] gi|311796268|gb|EFR12622.1| protein of unknown function DUF150 [Caldicellulosiruptor lactoaceticus 6A] gi|312180375|gb|ADQ40545.1| protein of unknown function DUF150 [Caldicellulosiruptor kristjanssonii 177R1B] Length = 151 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 88/149 (59%), Gaps = 6/149 (4%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + +++P++E+ F V I +E ++ L++++++ G +T+ DC+ +S+ +S Sbjct: 4 ITKKVEELVKPILEKYGFDLVDIEFKKEGRSYFLRVYIDKP-GGITIDDCQLVSEELSEK 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD+ + I Y LEVSSPG+DRP+V DF+R G VV + ++ K+ G+++ + Sbjct: 63 LDIVDPIPFSYYLEVSSPGVDRPLVTDRDFIRNRGRVVDVFLNQPFLNRTKITGELVEKN 122 Query: 140 ETGFFL--EKEKRG--EKDMNELQIAISF 164 E L +KEK +++ ++++AI F Sbjct: 123 EKSLVLIVDKEKIDIPVENIKKVKLAIRF 151 >gi|153004005|ref|YP_001378330.1| hypothetical protein Anae109_1138 [Anaeromyxobacter sp. Fw109-5] gi|259585695|sp|A7H9F0|RIMP_ANADF RecName: Full=Ribosome maturation factor rimP gi|152027578|gb|ABS25346.1| protein of unknown function DUF150 [Anaeromyxobacter sp. Fw109-5] Length = 171 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 35/89 (39%), Positives = 58/89 (65%), Gaps = 2/89 (2%) Query: 28 VIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 V++PV+ + V++ L + L++FV++ G + + DC+ +S+ + PILDVE+ I Sbjct: 16 VLEPVLARDGYELVEVEWLRQGSRWTLRLFVDKP-GGVGIEDCQAVSRLVDPILDVEDFI 74 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGH 115 E Y LEVSSPG+DRP+ + +DF R+ G Sbjct: 75 EPAYDLEVSSPGLDRPLRKPADFDRYAGQ 103 >gi|152995056|ref|YP_001339891.1| hypothetical protein Mmwyl1_1025 [Marinomonas sp. MWYL1] gi|189038545|sp|A6VU27|RIMP_MARMS RecName: Full=Ribosome maturation factor rimP gi|150835980|gb|ABR69956.1| protein of unknown function DUF150 [Marinomonas sp. MWYL1] Length = 153 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 70/115 (60%), Gaps = 2/115 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERD-DGNMTLRDCEELSQAISPILDV 82 + +I+PV+E + F + L K+ +L+I++E D + + + DC +S+ +S ILDV Sbjct: 8 LEELIRPVVEGLGFEFWGMEYLSLGKDSVLRIYIETDAEKGIDVEDCARVSRQVSSILDV 67 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 E+ I G Y LEVSSPG+DRP+ + + + G +V+ + + ++K G++MG Sbjct: 68 EDPITGEYNLEVSSPGLDRPLFSLAQYQAYIGSIVSLRLRVPFDGRRKFKGQLMG 122 >gi|56478753|ref|YP_160342.1| hypothetical protein ebA5838 [Aromatoleum aromaticum EbN1] gi|81356614|sp|Q5NZS3|RIMP_AZOSE RecName: Full=Ribosome maturation factor rimP gi|56314796|emb|CAI09441.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1] Length = 142 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 81/150 (54%), Gaps = 12/150 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 D+ +++ V+ + F V K L+++F++ + G +T+ DC +S ++ + +VE Sbjct: 2 DVEGLVEQVVSGLGFELVDFET-SPKGRLMRVFIDIERG-VTVDDCATVSNQLTRVFEVE 59 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 N+ + RLEVSSPG+DRP+ + +DF R+ G V + + G+++ IG + G SE Sbjct: 60 NV--DYDRLEVSSPGLDRPLKKTADFERFAGDEVQVRLRMPIGNQRNFIGVLEGLSEGVV 117 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L +K +A FD + ARL+ Sbjct: 118 RLHTDKG--------DVAFPFDEIEKARLV 139 >gi|326791501|ref|YP_004309322.1| hypothetical protein Clole_2418 [Clostridium lentocellum DSM 5427] gi|326542265|gb|ADZ84124.1| protein of unknown function DUF150 [Clostridium lentocellum DSM 5427] Length = 153 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 86/145 (59%), Gaps = 6/145 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I + P++ E+ + V + ++E N L+I+++++ G +T++DC+ S+AI +LD + Sbjct: 10 IEGYLDPILAELHYELVDVEYVKEGPNYYLRIYIDKE-GGITIQDCQLTSRAIEKVLDEK 68 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I+ Y LEVSSPG+DR + + +F R+ G +V ++ + ++ G+++ +E Sbjct: 69 DPIKDPYVLEVSSPGLDRVLKKDKEFERFKGRLVDVKLYEAINKQKHFTGELIKKTEDKL 128 Query: 144 FLEKEKRG----EKDMNELQIAISF 164 +++ E K++ +++AI+F Sbjct: 129 YIDDEGTNLEFEMKNVAVVRLAITF 153 >gi|114331634|ref|YP_747856.1| hypothetical protein Neut_1648 [Nitrosomonas eutropha C91] gi|114308648|gb|ABI59891.1| protein of unknown function DUF150 [Nitrosomonas eutropha C91] Length = 160 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 75/138 (54%), Gaps = 6/138 (4%) Query: 11 YEPRIFGDMGLAGDISSV---IQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLR 67 +E + G + G+ S+ ++P I M + V I LL++FV++ DG +TL Sbjct: 3 FEGGLVGPFFICGEAMSLFELLEPTIAGMGYELVDIEQ-SAPGRLLRVFVDKKDGAITLA 61 Query: 68 DCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD 127 DC +S + +L VENI + RLEVSSPG+DRP+ +++DF+R+ G + + ++ Sbjct: 62 DCVAVSNHLGQLLAVENI--DYNRLEVSSPGLDRPLKKRADFVRFVGESIRIRLRIALQG 119 Query: 128 KQKLIGKIMGTSETGFFL 145 ++ +G + + L Sbjct: 120 QRNFVGTLTEVGDDALML 137 >gi|158320556|ref|YP_001513063.1| hypothetical protein Clos_1524 [Alkaliphilus oremlandii OhILAs] gi|259585693|sp|A8MHI0|RIMP_ALKOO RecName: Full=Ribosome maturation factor rimP gi|158140755|gb|ABW19067.1| protein of unknown function DUF150 [Alkaliphilus oremlandii OhILAs] Length = 154 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 72/115 (62%), Gaps = 2/115 (1%) Query: 28 VIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 ++ P+I+ +F V + +E N L+I++++ G +TL DC+++S+ + LD E+ I Sbjct: 13 LVMPIIQNENFELVDLEYKKEGSNWYLRIYIDKP-GGITLDDCQKVSEQLGEELDREDPI 71 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 +Y LEVSSPG+DRP+ + SDF+R+ G +V ++ + + + G+++G E Sbjct: 72 SENYFLEVSSPGLDRPLKKDSDFIRFAGEIVEVKLYEALNGNKVIEGELVGLEEN 126 >gi|320354997|ref|YP_004196336.1| hypothetical protein Despr_2912 [Desulfobulbus propionicus DSM 2032] gi|320123499|gb|ADW19045.1| protein of unknown function DUF150 [Desulfobulbus propionicus DSM 2032] Length = 153 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 72/114 (63%), Gaps = 2/114 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I +P++ +M V++ E + +L+ F++++ G +T+ DC ++S+ IS L+VE Sbjct: 12 IQGFAEPLLADMGMELVEVQFRREGHGWVLRFFIDKE-GGITIDDCADVSREISAYLEVE 70 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++I+ Y LEVSSPG++RP+ +K DF R+ ++ ++ G+++ L G ++G Sbjct: 71 DLIDHAYHLEVSSPGLERPLRKKEDFHRFIDRLIRVKLREPLGEQKVLTGTLLG 124 >gi|220931625|ref|YP_002508533.1| hypothetical protein Hore_07810 [Halothermothrix orenii H 168] gi|259585780|sp|B8CW69|RIMP_HALOH RecName: Full=Ribosome maturation factor rimP gi|219992935|gb|ACL69538.1| uncharacterized protein conserved in bacteria [Halothermothrix orenii H 168] Length = 159 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 83/158 (52%), Gaps = 8/158 (5%) Query: 19 MGLAGD-ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAI 76 MG D + + QP++E V + ++E +N +L++F+E +G +TL CE +S+ + Sbjct: 1 MGKITDRVEDLAQPIVESQGLELVDVEYVKEGENRVLRVFIENPEGEVTLDHCENVSKNL 60 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 LD + I+ Y LEVSSPGI+RP+ +K DF R++G + + +++ G I Sbjct: 61 DEKLDEVDPIQESYILEVSSPGIERPLKKKEDFDRFSGKLAYIKTFAPVSGNKEITGIIK 120 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G + K+ ++ ++ I F + A L+V Sbjct: 121 GRDGDNIKVLKKD------DDKELEIPFSQIAKAHLMV 152 >gi|197117687|ref|YP_002138114.1| hypothetical protein Gbem_1299 [Geobacter bemidjiensis Bem] gi|226695910|sp|B5EI54|RIMP_GEOBB RecName: Full=Ribosome maturation factor rimP gi|197087047|gb|ACH38318.1| protein of unknown function DUF150 [Geobacter bemidjiensis Bem] Length = 160 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 35/99 (35%), Positives = 67/99 (67%), Gaps = 5/99 (5%) Query: 47 EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRK 106 E +++++++F+E+ +G + L DC ++S+ +S ILDVE+ + Y LEVSSPGI RP+ + Sbjct: 33 EGRDMVVRVFLEKREGGINLDDCADVSRQLSDILDVEDFMPERYTLEVSSPGICRPLKKV 92 Query: 107 SDFLRWNGHVVACE----IVLSSGDKQK-LIGKIMGTSE 140 +D+ R+ GH++ + + +G+K+K GK+ G ++ Sbjct: 93 ADYERFLGHLIKVKTFEMLADEAGNKRKTFTGKLTGIAD 131 >gi|67459265|ref|YP_246889.1| hypothetical protein RF_0873 [Rickettsia felis URRWXCal2] gi|75536303|sp|Q4UL49|RIMP_RICFE RecName: Full=Ribosome maturation factor rimP gi|67004798|gb|AAY61724.1| Uncharacterized protein [Rickettsia felis URRWXCal2] Length = 161 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 89/160 (55%), Gaps = 9/160 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDG-NMTLRDCEELSQAISPILDVE 83 I++VI+ + +M F V + +++I ++ +G +++ DC + S+ IS ILDVE Sbjct: 8 ITNVIEESLTDMGFELVLVKFKGVNPKVVEILIDSLNGEKISVEDCTKASRTISAILDVE 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 ++IE Y LEV+S G++RP+V+ ++ R+ G V ++ K + GKI+ Sbjct: 68 DLIEDAYSLEVASSGLERPLVKFENYNRFLGREVKIKLKELLNGKTRYQGKIIKAKNNKI 127 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 +L+ E E ++ I +D + +A L++T+E+ + L Sbjct: 128 YLKCE--------EQEVLIDYDLIKNANLVLTEEVFKKLL 159 >gi|53804602|ref|YP_113779.1| hypothetical protein MCA1317 [Methylococcus capsulatus str. Bath] gi|81682218|sp|Q609B8|RIMP_METCA RecName: Full=Ribosome maturation factor rimP gi|53758363|gb|AAU92654.1| conserved hypothetical protein [Methylococcus capsulatus str. Bath] Length = 150 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 82/155 (52%), Gaps = 10/155 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 M + + +I+PV+ + + I + + +L+++++ G + L DC ++S +S Sbjct: 1 MRMPEHLQRLIEPVVTGLGYELAGIEF-DARARVLRVYIDHPQG-IGLDDCSKVSYQLSG 58 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LDVE+ I G Y+LE+SSPG+DRP+ F R+ G V + + S +++ G+I G Sbjct: 59 MLDVEDPIPGQYQLEISSPGLDRPLFTLEHFKRFTGRRVRLQTLRSLDGQRRFKGEIAGV 118 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 LE D N L AI FD + ARLI Sbjct: 119 RGDVIDLE-------DDNGLH-AIPFDLIDKARLI 145 >gi|332992816|gb|AEF02871.1| hypothetical protein ambt_06680 [Alteromonas sp. SN2] Length = 152 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 70/115 (60%), Gaps = 2/115 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ ++ P +E + F V I + K+ +L++F++ ++G +++ +C ++S +S ILDVE Sbjct: 8 LTEMLNPGVEALGFELVGIEFVRAGKHSILRVFIDHENG-ISVDNCADVSHQVSAILDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 + I Y LEVSSPG+DRP+ ++ ++ G VV + + D++ GK++ Sbjct: 67 DPISTEYNLEVSSPGMDRPLFKEKHYVDSVGEVVQVRLSMPMDDRRNFKGKVLAC 121 >gi|259585805|sp|Q0AFJ1|RIMP_NITEC RecName: Full=Ribosome maturation factor rimP Length = 143 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 67/118 (56%), Gaps = 3/118 (2%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +++P I M + V I LL++FV++ DG +TL DC +S + +L VENI Sbjct: 6 LLEPTIAGMGYELVDIEQ-SAPGRLLRVFVDKKDGAITLADCVAVSNHLGQLLAVENI-- 62 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFL 145 + RLEVSSPG+DRP+ +++DF+R+ G + + ++ ++ +G + + L Sbjct: 63 DYNRLEVSSPGLDRPLKKRADFVRFVGESIRIRLRIALQGQRNFVGTLTEVGDDALML 120 >gi|253701582|ref|YP_003022771.1| hypothetical protein GM21_2984 [Geobacter sp. M21] gi|259585778|sp|C6E2Q3|RIMP_GEOSM RecName: Full=Ribosome maturation factor rimP gi|251776432|gb|ACT19013.1| protein of unknown function DUF150 [Geobacter sp. M21] Length = 160 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 36/99 (36%), Positives = 66/99 (66%), Gaps = 5/99 (5%) Query: 47 EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRK 106 E +++++++F+E+ +G + L DC E+S+ +S ILDVE+ + Y LEVSSPGI RP+ + Sbjct: 33 EGRDMVVRVFLEKREGGINLDDCAEVSRQLSDILDVEDFMPERYTLEVSSPGICRPLKKV 92 Query: 107 SDFLRWNGHVVACE----IVLSSGDKQK-LIGKIMGTSE 140 D+ R+ GH++ + + +G+K+K GK+ G ++ Sbjct: 93 VDYERFMGHLIKVKTFEMLPDEAGNKRKTFTGKLTGIAD 131 >gi|290969146|ref|ZP_06560671.1| conserved hypothetical protein [Megasphaera genomosp. type_1 str. 28L] gi|290780652|gb|EFD93255.1| conserved hypothetical protein [Megasphaera genomosp. type_1 str. 28L] Length = 153 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 66/112 (58%), Gaps = 1/112 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ + ++ S V + + EK+ L++F++++ G + L DC+++S+ +S +LD E+ Sbjct: 13 VTEKAEQLLASTSLELVDVEYVREKDWYLRVFIDKE-GGVDLEDCQQVSEKLSKVLDRED 71 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 I +Y LEVSSPG+DR + + DFLR+ G V K+ +G+++ Sbjct: 72 PIRDNYLLEVSSPGLDRILKKDKDFLRYAGRTVDIHFFAPREGKKDWVGELV 123 >gi|30248763|ref|NP_840833.1| hypothetical protein NE0759 [Nitrosomonas europaea ATCC 19718] gi|34222818|sp|Q82WD1|RIMP_NITEU RecName: Full=Ribosome maturation factor rimP gi|30180358|emb|CAD84670.1| DUF150 [Nitrosomonas europaea ATCC 19718] Length = 143 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 37/109 (33%), Positives = 67/109 (61%), Gaps = 3/109 (2%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +++P I M + V I LL++F+++ +G++TL DC +S +S +L VENI Sbjct: 6 LLEPTIAGMGYELVDIEQ-SAPGRLLRVFIDKKEGSITLDDCVAISNHLSQLLAVENI-- 62 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 + RLEVSSPG+DRP+ +K+DF+R+ G + ++ ++ +G ++ Sbjct: 63 DYNRLEVSSPGLDRPLKKKADFVRYMGESARIRLRIALQGQRNFVGTLV 111 >gi|229031447|ref|ZP_04187447.1| hypothetical protein bcere0028_35010 [Bacillus cereus AH1271] gi|228729736|gb|EEL80716.1| hypothetical protein bcere0028_35010 [Bacillus cereus AH1271] Length = 164 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 90/166 (54%), Gaps = 12/166 (7%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEEL 72 R+F D + + + QP++EE++ V + ++E ++ L++F++ + G + + +C + Sbjct: 6 RLFMDKKVTEVVEAFAQPIVEELNLELVDVEYVQEGQDWFLRVFIDSEKG-VDIEECGAV 64 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+ +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ Sbjct: 65 SERLSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMFE 124 Query: 133 GKIM---GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 GK++ GT+ T K ++ E I IS D + +ARL VT Sbjct: 125 GKLLSYDGTTITLLLTIKTRKKE-------IQISMDKVANARLAVT 163 >gi|256821529|ref|YP_003145492.1| hypothetical protein Kkor_0303 [Kangiella koreensis DSM 16069] gi|256795068|gb|ACV25724.1| protein of unknown function DUF150 [Kangiella koreensis DSM 16069] Length = 150 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 70/118 (59%), Gaps = 2/118 (1%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M ++ +I+P +E F + L + K+ +L++F++ ++G +++ +C E+S +S Sbjct: 1 MARNAELEKIIRPAVEAAGFEFWGLEHLAQGKHSVLRVFIDHENG-ISVDNCAEVSHQVS 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +LDVE+ I+G Y LE+SSPG+DRP+ + F R+ G ++ + ++K G I Sbjct: 60 GVLDVEDPIKGLYNLEISSPGMDRPLFNEQQFARYVGEDAEVKLSVPLNGRRKFKGTI 117 >gi|302381339|ref|YP_003817162.1| hypothetical protein Bresu_0224 [Brevundimonas subvibrioides ATCC 15264] gi|302191967|gb|ADK99538.1| protein of unknown function DUF150 [Brevundimonas subvibrioides ATCC 15264] Length = 232 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 8/159 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVER-DDGNMTLRDCEELSQAISPILD 81 +I +I PV + + V++ L+ LQ+ ER D ++ + +C LS+A+S +LD Sbjct: 45 EILELIDPVADSIGLSIVRVRLMGGTLRRRLQVMAERPSDNDIDVGECARLSRAMSEVLD 104 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + I G Y LEVSSPGIDRP+ R DF + G E +++ G + GT Sbjct: 105 AADPIAGEYLLEVSSPGIDRPLTRLKDFDLFEGLEARLESDRMIEGRKRFKGILAGTDGD 164 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 ++ + GE D I FD L+ A+L++ D LL+ Sbjct: 165 NIAIDLD--GEDDT----ALIPFDWLVDAKLVMNDALLK 197 >gi|296132884|ref|YP_003640131.1| protein of unknown function DUF150 [Thermincola sp. JR] gi|296031462|gb|ADG82230.1| protein of unknown function DUF150 [Thermincola potens JR] Length = 153 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 67/114 (58%), Gaps = 2/114 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ + P++E V + ++E + L++F+++ G ++L DC+ ++Q + P+LD + Sbjct: 10 VTELAVPIVENAGMELVDVEYVKEGAHWYLRVFIDKPQG-VSLDDCQMIAQRLDPLLDEK 68 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 + I Y LEVSSPG+DRP+ + +DF R+ G V K++ IG++ G Sbjct: 69 DPIPHEYMLEVSSPGLDRPLKKPADFARYAGRKVKVSTYAPIDGKKEFIGELKG 122 >gi|262042728|ref|ZP_06015882.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039953|gb|EEW41070.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 140 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 36/103 (34%), Positives = 62/103 (60%), Gaps = 1/103 (0%) Query: 33 IEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRL 92 +E + F V I + + L+I+++ +DG + + DC ++S +S ++DVE+ I Y L Sbjct: 6 VEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVMDVEDPITVAYNL 64 Query: 93 EVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 EVSSPG+DRPM + R+ G VA + ++ +++KL G I Sbjct: 65 EVSSPGLDRPMFTAEHYQRFTGEEVALVLRMAVQNRRKLQGII 107 >gi|108761060|ref|YP_630294.1| hypothetical protein MXAN_2065 [Myxococcus xanthus DK 1622] gi|122389560|sp|Q1DAM9|RIMP_MYXXD RecName: Full=Ribosome maturation factor rimP gi|108464940|gb|ABF90125.1| conserved hypothetical protein [Myxococcus xanthus DK 1622] Length = 161 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 76/146 (52%), Gaps = 8/146 (5%) Query: 27 SVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVENI 85 ++++P++ V + L E+ +L++F+++ G + L +C ++S+A+ P LDVE+ Sbjct: 16 ALLEPIVAGEGLELVDLEFLREREGWVLRLFIDKPGGRVGLDECTQVSRAVDPSLDVEDF 75 Query: 86 IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD--KQKLIGKIMGTSETGF 143 I Y LEVSSPG+DRP+ + + F R G V + G+ ++ G + + G Sbjct: 76 IPHEYNLEVSSPGVDRPLRKPTHFERVKGQQVKVKTFGPVGEPPRKNFTGTLTEVAGDGI 135 Query: 144 FLEKEKRGE-----KDMNELQIAISF 164 +E E G KD+ + + F Sbjct: 136 SVEVEGAGTFHILFKDIAKANLEFQF 161 >gi|51473735|ref|YP_067492.1| hypothetical protein RT0541 [Rickettsia typhi str. Wilmington] gi|81390042|sp|Q68WI2|RIMP_RICTY RecName: Full=Ribosome maturation factor rimP gi|51460047|gb|AAU04010.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington] Length = 161 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 87/160 (54%), Gaps = 9/160 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-MTLRDCEELSQAISPILDVE 83 I+++I+ + +M F V + +++I ++ +GN +++ DC +S+ IS ILDVE Sbjct: 8 ITNIIEESLTDMGFELVLVKFKGVNTKVVEILIDSLNGNKISIEDCTNVSRTISAILDVE 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 ++IE Y LEVSS GI+R +V+ ++ R+ G V ++ K GKI+ Sbjct: 68 DLIEDAYSLEVSSSGIERKLVKFENYNRFLGREVKVKLKALLNGKTLYQGKIIKAENNKI 127 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 +L+ E ++ I F+ + +A L++T+E+ + L Sbjct: 128 YLK--------CAEQEVLIDFNLIKNANLVLTEEVFKKLL 159 >gi|153855239|ref|ZP_01996405.1| hypothetical protein DORLON_02419 [Dorea longicatena DSM 13814] gi|149752238|gb|EDM62169.1| hypothetical protein DORLON_02419 [Dorea longicatena DSM 13814] Length = 150 Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 74/136 (54%), Gaps = 2/136 (1%) Query: 28 VIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 ++ P++EE F V + ++E N L+ ++++ G + + DCE +S+ +S ILD ++ I Sbjct: 9 ILLPIVEEYGFELVDVEYVKEGSNWYLRAYIDKP-GGIGVNDCEVVSRRLSDILDEKDYI 67 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE 146 E Y LEVSSPG+ RP+ ++ DF R G V K++ G + ET +E Sbjct: 68 EDSYILEVSSPGLGRPLKKEKDFKRSLGEEVEIRTYRMIDRKKEFTGILKDYDETTVTIE 127 Query: 147 KEKRGEKDMNELQIAI 162 E EK + +IA+ Sbjct: 128 MEDETEKTFEKSEIAL 143 >gi|90022355|ref|YP_528182.1| hypothetical protein Sde_2710 [Saccharophagus degradans 2-40] gi|123395825|sp|Q21H59|RIMP_SACD2 RecName: Full=Ribosome maturation factor rimP gi|89951955|gb|ABD81970.1| protein of unknown function DUF150 [Saccharophagus degradans 2-40] Length = 151 Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 68/117 (58%), Gaps = 2/117 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ PV+E + + L ++ K LL+IF+E++ G + + DCE +S+ +S +LDVE Sbjct: 8 LEKMLAPVVESLGCEFWGLELRMQGKQSLLRIFIEKEAG-VGVEDCENVSRQVSAVLDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + I G Y LEVSSPG+DRP+ F R+ G V+ + + ++ GK+ + Sbjct: 67 DPISGEYTLEVSSPGMDRPLFTLDHFTRFVGEHVSLRLRTAFDGRRNFSGKLTAVED 123 >gi|77919152|ref|YP_356967.1| hypothetical protein Pcar_1552 [Pelobacter carbinolicus DSM 2380] gi|91208010|sp|Q3A4B0|RIMP_PELCD RecName: Full=Ribosome maturation factor rimP gi|77545235|gb|ABA88797.1| conserved hypothetical protein [Pelobacter carbinolicus DSM 2380] Length = 162 Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 84/155 (54%), Gaps = 13/155 (8%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I S++ PV+EE V + E + +L++++++ G +TL C E+S+ + +L+VE Sbjct: 10 IRSLVLPVLEEKGRELVDVEYRREGQGWILRLYIDQP-GGVTLDACAEVSREVGVLLEVE 68 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHV------VACEIVLSSGDKQKLIGKIMG 137 + I+ Y LEVSSPG+DRP+ + D+ R+ G + V+ ++ ++ +G + G Sbjct: 69 DPIDTAYNLEVSSPGLDRPLTKLEDYERFAGRLAKVKSRVSIDVDGKGRGRKTFVGVLAG 128 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 SE LE KD N ++ I F+ + A L Sbjct: 129 LSEGKVVLEL-----KDKNGFRMEIPFEDIEKANL 158 >gi|83589894|ref|YP_429903.1| hypothetical protein Moth_1046 [Moorella thermoacetica ATCC 39073] gi|91207996|sp|Q2RJM9|RIMP_MOOTA RecName: Full=Ribosome maturation factor rimP gi|83572808|gb|ABC19360.1| Protein of unknown function DUF150 [Moorella thermoacetica ATCC 39073] Length = 158 Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 83/150 (55%), Gaps = 9/150 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I +++P++ M + V + E +L++F++R +G + L DCE++S+ +S +LD + Sbjct: 8 IQELVEPLLTPMGYELVDLQYGREGGRYILRLFIDRPEG-IGLDDCEQVSRVVSALLDEK 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I Y LEVSSPG++RP+ +++DF R+ G V ++ G+++G + Sbjct: 67 DPIPHSYYLEVSSPGLERPLKKEADFNRFAGRKVKLRTFAPINGQRHFQGRLLGYQDGQV 126 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E+ + +AI + + +ARL+ Sbjct: 127 RMHLEEGWD-------LAIPLEQVATARLV 149 >gi|228954093|ref|ZP_04116122.1| hypothetical protein bthur0006_34650 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229191986|ref|ZP_04318956.1| hypothetical protein bcere0002_36430 [Bacillus cereus ATCC 10876] gi|228591537|gb|EEK49386.1| hypothetical protein bcere0002_36430 [Bacillus cereus ATCC 10876] gi|228805659|gb|EEM52249.1| hypothetical protein bthur0006_34650 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 174 Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 90/166 (54%), Gaps = 12/166 (7%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEEL 72 R+F D + + + QP++EE++ V + ++E ++ L++F++ + G + + +C + Sbjct: 16 RLFMDKKVTEVVEAFAQPIVEELNLELVDVEYVKEGQDWFLRVFIDSEKG-VDIEECGAV 74 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+ +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ Sbjct: 75 SERLSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMFE 134 Query: 133 GKIM---GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 GK++ GT+ T K ++ E I IS D + +ARL VT Sbjct: 135 GKLLSYDGTTITLLLTIKTRKKE-------IQISMDKVANARLAVT 173 >gi|323705404|ref|ZP_08116979.1| protein of unknown function DUF150 [Thermoanaerobacterium xylanolyticum LX-11] gi|323535306|gb|EGB25082.1| protein of unknown function DUF150 [Thermoanaerobacterium xylanolyticum LX-11] Length = 151 Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 39/111 (35%), Positives = 67/111 (60%), Gaps = 2/111 (1%) Query: 28 VIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 ++ P IE+ F V + +E N L++++++D G ++L DC+ +S+ +S LD + I Sbjct: 11 LVTPAIEKNKFELVDVEYKKEGNNWYLRVYIDKD-GGVSLDDCQIISEYLSEKLDEVDPI 69 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 + Y LEVSSPGIDRP+ K DF ++ G +V + K+K G+++G Sbjct: 70 DNSYILEVSSPGIDRPLKTKRDFEKFKGSLVEVSLYQPIDKKKKYEGELLG 120 >gi|312622704|ref|YP_004024317.1| hypothetical protein Calkro_1646 [Caldicellulosiruptor kronotskyensis 2002] gi|312203171|gb|ADQ46498.1| protein of unknown function DUF150 [Caldicellulosiruptor kronotskyensis 2002] Length = 151 Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 87/149 (58%), Gaps = 6/149 (4%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + +++P++E F V I +E K+ L++++++ G +T+ DC+ +S+ +S Sbjct: 4 ITKKVEELVKPILERYGFDLVDIEFKKEGKSHFLRVYIDKP-GGITIDDCQLVSEELSEK 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD+ + I Y LEVSSPG+DRP+V DF+R G VV + ++ ++ G+++ + Sbjct: 63 LDIVDPIPFSYYLEVSSPGVDRPLVTDRDFIRNKGKVVDVFLNQPFLNRTRITGELVEKN 122 Query: 140 ETGFFL--EKEK--RGEKDMNELQIAISF 164 E L +KEK +++ ++++AI F Sbjct: 123 EKSLILIVDKEKIVIPVENIKKVKLAIRF 151 >gi|254490571|ref|ZP_05103757.1| conserved hypothetical protein [Methylophaga thiooxidans DMS010] gi|224464315|gb|EEF80578.1| conserved hypothetical protein [Methylophaga thiooxydans DMS010] Length = 148 Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 70/129 (54%), Gaps = 2/129 (1%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M + + +I+ IE + + V + ++ + +L+I+++ + G + + DCE++S IS Sbjct: 1 MAITDQVEQLIEAPIESLGYELVGVEYIQGGPDAILRIYIDAEQG-IGIEDCEKVSHQIS 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE I Y LEVSSPG DRP+ + DF R+ G V + L ++ G + G Sbjct: 60 GVLDVEEPIRSAYMLEVSSPGFDRPLFKARDFERFAGAEVKISMKLPVQGRRNFTGVLQG 119 Query: 138 TSETGFFLE 146 S+ +E Sbjct: 120 FSDGEVLIE 128 >gi|147677600|ref|YP_001211815.1| hypothetical protein PTH_1265 [Pelotomaculum thermopropionicum SI] gi|259586176|sp|A5D2U8|RIMP_PELTS RecName: Full=Ribosome maturation factor rimP gi|146273697|dbj|BAF59446.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 153 Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 78/151 (51%), Gaps = 10/151 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + V PV++E V + +E L+IF+++ G + + DC+ +S+ I +LD Sbjct: 10 VKRVTLPVVQEAGLELVDVEYAKEGGRYYLRIFIDKP-GGVRIEDCQHVSEKIDRLLDEL 68 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I Y LEVSSPGIDRP+ + D++R+ G + + ++K G+I+G Sbjct: 69 DPIPQSYFLEVSSPGIDRPLKKAGDYIRFAGRLARVKTFSPVEGRRKFTGRIVGMHGEDV 128 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ E + +++I F + SARL V Sbjct: 129 VMQVEGK--------EMSIPFKQIASARLEV 151 >gi|228922571|ref|ZP_04085871.1| hypothetical protein bthur0011_35560 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228960033|ref|ZP_04121697.1| hypothetical protein bthur0005_35040 [Bacillus thuringiensis serovar pakistani str. T13001] gi|229047503|ref|ZP_04193093.1| hypothetical protein bcere0027_34860 [Bacillus cereus AH676] gi|229071315|ref|ZP_04204538.1| hypothetical protein bcere0025_34880 [Bacillus cereus F65185] gi|229081072|ref|ZP_04213582.1| hypothetical protein bcere0023_37110 [Bacillus cereus Rock4-2] gi|229111288|ref|ZP_04240841.1| hypothetical protein bcere0018_35340 [Bacillus cereus Rock1-15] gi|229129093|ref|ZP_04258066.1| hypothetical protein bcere0015_35380 [Bacillus cereus BDRD-Cer4] gi|229146388|ref|ZP_04274759.1| hypothetical protein bcere0012_35310 [Bacillus cereus BDRD-ST24] gi|229152016|ref|ZP_04280211.1| hypothetical protein bcere0011_35560 [Bacillus cereus m1550] gi|229180093|ref|ZP_04307437.1| hypothetical protein bcere0005_34390 [Bacillus cereus 172560W] gi|228603302|gb|EEK60779.1| hypothetical protein bcere0005_34390 [Bacillus cereus 172560W] gi|228631365|gb|EEK87999.1| hypothetical protein bcere0011_35560 [Bacillus cereus m1550] gi|228637021|gb|EEK93480.1| hypothetical protein bcere0012_35310 [Bacillus cereus BDRD-ST24] gi|228654330|gb|EEL10195.1| hypothetical protein bcere0015_35380 [Bacillus cereus BDRD-Cer4] gi|228672064|gb|EEL27355.1| hypothetical protein bcere0018_35340 [Bacillus cereus Rock1-15] gi|228702116|gb|EEL54592.1| hypothetical protein bcere0023_37110 [Bacillus cereus Rock4-2] gi|228711769|gb|EEL63721.1| hypothetical protein bcere0025_34880 [Bacillus cereus F65185] gi|228723750|gb|EEL75105.1| hypothetical protein bcere0027_34860 [Bacillus cereus AH676] gi|228799549|gb|EEM46502.1| hypothetical protein bthur0005_35040 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228837000|gb|EEM82341.1| hypothetical protein bthur0011_35560 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 164 Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 90/166 (54%), Gaps = 12/166 (7%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEEL 72 R+F D + + + QP++EE++ V + ++E ++ L++F++ + G + + +C + Sbjct: 6 RLFMDKKVTEVVEAFAQPIVEELNLELVDVEYVKEGQDWFLRVFIDSEKG-VDIEECGAV 64 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+ +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ Sbjct: 65 SERLSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMFE 124 Query: 133 GKIM---GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 GK++ GT+ T K ++ E I IS D + +ARL VT Sbjct: 125 GKLLSYDGTTITLLLTIKTRKKE-------IQISMDKVANARLAVT 163 >gi|330722349|gb|EGH00206.1| NusA [gamma proteobacterium IMCC2047] Length = 150 Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 75/125 (60%), Gaps = 8/125 (6%) Query: 18 DMGLAGDISSVIQPVIE--EMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 DMGL + +++PV+E E+ F +++ +++ + L++++E D G + + DCE +S+ Sbjct: 4 DMGL----TELVRPVVEGLELEFWGLEM-VVQGREKTLRVYIESDKG-IAVEDCEAVSRQ 57 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S + DVE+ I G Y LEVSSPG+DRP+ + F ++ G V ++ + ++ G + Sbjct: 58 LSSLFDVEDPIAGEYTLEVSSPGLDRPLFEAAQFAQYVGETVKIKLRSAFEGRRNFRGAL 117 Query: 136 MGTSE 140 G + Sbjct: 118 SGVED 122 >gi|284108774|ref|ZP_06386439.1| protein of unknown function DUF150 [Candidatus Poribacteria sp. WGA-A3] gi|283829848|gb|EFC34139.1| protein of unknown function DUF150 [Candidatus Poribacteria sp. WGA-A3] Length = 157 Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 37/154 (24%), Positives = 83/154 (53%), Gaps = 4/154 (2%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 GL + + +P+ + + +++ + ++++ VE++ G + ++DCE+ Q++ Sbjct: 3 GLGSLVQGIAEPIAKALRLEIIEVECHGQGAKTIVRVIVEKE-GGVGIQDCEQFHQSLGR 61 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LDV + + YRL+VSSPG+DRP+ R+ D+ + G + ++ K ++G++ Sbjct: 62 ALDVADPVAHAYRLDVSSPGLDRPLKRRKDYDQAVGRTIRVKVHAPVQGKGTVVGQLAEV 121 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + G L+ R K ++A+ +D++ A+L Sbjct: 122 DDQGITLQVPVR--KSRTPRRVALEWDAIAHAKL 153 >gi|322418687|ref|YP_004197910.1| hypothetical protein GM18_1160 [Geobacter sp. M18] gi|320125074|gb|ADW12634.1| protein of unknown function DUF150 [Geobacter sp. M18] Length = 159 Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 37/96 (38%), Positives = 66/96 (68%), Gaps = 6/96 (6%) Query: 47 EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRK 106 E +++++++F+E++ G +TL DC ++S+ +S ILDVE+ + Y LEVSSPGI RP+ + Sbjct: 33 EGRDMVVRVFLEKE-GGITLDDCADVSRQLSDILDVEDFMPERYTLEVSSPGICRPLKKV 91 Query: 107 SDFLRWNGHVVACE----IVLSSGDKQK-LIGKIMG 137 +D+ R+ GH+V + + +G+K+K GK+ G Sbjct: 92 ADYERFMGHLVKVKTFDTLTDDAGNKRKTFTGKLAG 127 >gi|229086369|ref|ZP_04218546.1| hypothetical protein bcere0022_29560 [Bacillus cereus Rock3-44] gi|228696981|gb|EEL49789.1| hypothetical protein bcere0022_29560 [Bacillus cereus Rock3-44] Length = 164 Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 89/166 (53%), Gaps = 12/166 (7%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEEL 72 R+F D + + + QP++EE++ V + ++E K+ L++F++ + G + + +C + Sbjct: 6 RLFMDKKVTEVVEAFAQPIVEELNLELVDVEYVKEGKDWFLRVFIDSEKG-VDIEECGAV 64 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+ +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ Sbjct: 65 SERLSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMFE 124 Query: 133 GKIM---GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 GK++ GT+ T K ++ E I I D + +ARL VT Sbjct: 125 GKLLSYDGTTITLLLTIKTRKKE-------IQIPMDKVANARLAVT 163 >gi|188589052|ref|YP_001920614.1| hypothetical protein CLH_1220 [Clostridium botulinum E3 str. Alaska E43] gi|226696282|sp|B2V4G5|RIMP_CLOBA RecName: Full=Ribosome maturation factor rimP gi|188499333|gb|ACD52469.1| conserved hypothetical protein [Clostridium botulinum E3 str. Alaska E43] Length = 153 Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 39/124 (31%), Positives = 76/124 (61%), Gaps = 2/124 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + +++P++EE+S+ + ++E L+I++++++ +++L DCE++S+ +S I Sbjct: 6 LLEKVEVLVKPIVEELSYELYYLEYVKENGEYYLRIYIDKEEDSISLNDCEKVSRRVSEI 65 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ IE Y LEVSSPG++R + ++ F ++ G V S +K+ G I+ + Sbjct: 66 LDVEDPIEDSYYLEVSSPGLNRGLYKEEHFKKFIGREVLVRFNGSLEGMKKIQG-ILKEA 124 Query: 140 ETGF 143 E F Sbjct: 125 ENEF 128 >gi|187933637|ref|YP_001885467.1| hypothetical protein CLL_A1269 [Clostridium botulinum B str. Eklund 17B] gi|226695891|sp|B2TJ51|RIMP_CLOBB RecName: Full=Ribosome maturation factor rimP gi|187721790|gb|ACD23011.1| conserved hypothetical protein [Clostridium botulinum B str. Eklund 17B] Length = 153 Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 65/94 (69%), Gaps = 1/94 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +++P++EE+S+ + ++E L+I++++++ +++L DCE++S+ +S ILDVE Sbjct: 10 VEVLVKPIVEELSYELYYLEYVKENGEYYLRIYIDKEEDSISLNDCEKVSRRVSEILDVE 69 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + IE Y LEVSSPG++R + ++ F ++ G V Sbjct: 70 DPIEDSYYLEVSSPGLNRGLYKEEHFKKFIGREV 103 >gi|222529040|ref|YP_002572922.1| hypothetical protein Athe_1048 [Caldicellulosiruptor bescii DSM 6725] gi|254799910|sp|B9MR45|RIMP_ANATD RecName: Full=Ribosome maturation factor rimP gi|222455887|gb|ACM60149.1| protein of unknown function DUF150 [Caldicellulosiruptor bescii DSM 6725] Length = 151 Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 87/149 (58%), Gaps = 6/149 (4%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + +++P++E F V I +E K+ L++++++ G +T+ DC+ +S+ +S Sbjct: 4 ITKKVEELVKPILERYGFDLVDIEFKKEGKSHFLRVYIDKP-GGITIDDCQLVSEELSEK 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD+ + I Y LEVSSPG+DRP+V DF+R G VV + ++ ++ G+++ + Sbjct: 63 LDIVDPIPFSYYLEVSSPGVDRPLVTDRDFIRNKGKVVDVFLNQPFLNRTRITGELVEKN 122 Query: 140 ETGFFL--EKEK--RGEKDMNELQIAISF 164 E L +KEK +++ ++++AI F Sbjct: 123 EKSLILIVDKEKIVIPIENIKKVKLAIRF 151 >gi|78485465|ref|YP_391390.1| hypothetical protein Tcr_1121 [Thiomicrospira crunogena XCL-2] gi|91207998|sp|Q31GK7|RIMP_THICR RecName: Full=Ribosome maturation factor rimP gi|78363751|gb|ABB41716.1| conserved hypothetical protein with DUF150 domain [Thiomicrospira crunogena XCL-2] Length = 151 Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 70/129 (54%), Gaps = 1/129 (0%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M L I ++++P IE M F+ L K+ L+I++++D+ +T+ DC ++S+ +S Sbjct: 1 MTLEDKIENLLRPTIETMGFQFWGCEYLPAGKHSTLRIYIDKDEVGVTVDDCGKVSRQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 I+DVE+ I Y LEVSSPG+DRP+ + + G V +++ G + Sbjct: 61 AIMDVEDPISNAYMLEVSSPGMDRPLFHPEQYKAYEGQEVQVRTSSPVMGRKRFKGVMSQ 120 Query: 138 TSETGFFLE 146 SE+ +E Sbjct: 121 VSESDIAVE 129 >gi|292572171|gb|ADE30086.1| hypothetical protein rpr22_CDS533 [Rickettsia prowazekii Rp22] Length = 161 Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 90/164 (54%), Gaps = 9/164 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-MTLRDCEELSQAISPI 79 +A I+++I+ + +M F V + ++++ ++ +GN +++ DC +S+ IS I Sbjct: 4 IAQQITNIIEESLTDMGFELVLVKFKGVSPKVVEVLIDSLNGNKISIEDCTNVSRTISAI 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE++IE Y LEVSS GI+R +V+ ++ R+ G V ++ K GKI+ Sbjct: 64 LDVEDLIEEAYSLEVSSSGIERTLVKFENYNRFLGREVKIKLKELLNGKTLYQGKIIKAE 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 +L+ E +++I F+ + +A L++T+E+ + L Sbjct: 124 NNKIYLK--------CAEQEVSIDFNLIRNANLVLTEEVFKKLL 159 >gi|205354192|ref|YP_002227993.1| hypothetical protein SG3179 [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|259586192|sp|B5REN8|RIMP_SALG2 RecName: Full=Ribosome maturation factor rimP gi|205273973|emb|CAR38978.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326629313|gb|EGE35656.1| Ribosome maturation factor rimP [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 154 Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 65/111 (58%), Gaps = 1/111 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I +E + + V I + + L+I+++ +DG + + DC ++S +S +LDVE+ Sbjct: 12 LTEMITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVED 70 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I Y LEVSSPG+DRPM + R+ G VA + ++ +++K G I Sbjct: 71 PISVAYNLEVSSPGLDRPMFTADHYARFQGEEVALVLRMAVQNRRKWQGII 121 >gi|150390439|ref|YP_001320488.1| hypothetical protein Amet_2677 [Alkaliphilus metalliredigens QYMF] gi|259585692|sp|A6TRL1|RIMP_ALKMQ RecName: Full=Ribosome maturation factor rimP gi|149950301|gb|ABR48829.1| protein of unknown function DUF150 [Alkaliphilus metalliredigens QYMF] Length = 152 Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 83/137 (60%), Gaps = 2/137 (1%) Query: 28 VIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 +I P++E F V I +E + L++++++ G +TL DC+++S+ +S LD + I Sbjct: 11 LITPIVEAEQFELVDIEFKKEGPHKYLRVYIDKP-GGITLDDCQKVSEGLSKKLDEADPI 69 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE 146 +Y LEVSSPG+DRP+ R+ DFL++ G ++ ++ + ++ + G+++G + ++ Sbjct: 70 VENYFLEVSSPGLDRPLKREVDFLKFKGEMIELKLYEAIDGQKTIEGELVGLIDDKIVIK 129 Query: 147 KEKRGEKDMNELQIAIS 163 + E +M ++AI+ Sbjct: 130 ISETEEVEMPREKVAIT 146 >gi|303229567|ref|ZP_07316355.1| conserved hypothetical protein [Veillonella atypica ACS-134-V-Col7a] gi|303232094|ref|ZP_07318797.1| conserved hypothetical protein [Veillonella atypica ACS-049-V-Sch6] gi|302513200|gb|EFL55239.1| conserved hypothetical protein [Veillonella atypica ACS-049-V-Sch6] gi|302515692|gb|EFL57646.1| conserved hypothetical protein [Veillonella atypica ACS-134-V-Col7a] Length = 152 Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 70/117 (59%), Gaps = 1/117 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 +SSV++ VI + V + + E++ L++++++ G + L DC+ +S+ +S LD ++ Sbjct: 10 VSSVVEGVIAGTNLELVDVDYVRERDWYLRVYLDKP-GGVDLDDCQMVSEKLSAALDEKD 68 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 I +Y LEVSSPG+DR + + DF+R+NG V ++ ++ G + G ++T Sbjct: 69 PIAENYLLEVSSPGLDRVLKKDKDFIRYNGRDVDIQLFKPINGSKQYTGVLQGFTDT 125 >gi|154485018|ref|ZP_02027466.1| hypothetical protein EUBVEN_02736 [Eubacterium ventriosum ATCC 27560] gi|149733971|gb|EDM50090.1| hypothetical protein EUBVEN_02736 [Eubacterium ventriosum ATCC 27560] Length = 147 Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 78/137 (56%), Gaps = 2/137 (1%) Query: 27 SVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENI 85 ++I P+++E F V + ++E N L+ +V+++ G +T+ D E +S+ +S LD E+ Sbjct: 5 ALITPIVDEKGFELVDVEYVKEGSNWYLRAYVDKE-GGITINDLESVSRILSDKLDEEDF 63 Query: 86 IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFL 145 I Y LEVSSPG+ RP+ + DF R G+ + + + +++L+G + + + Sbjct: 64 ISDAYILEVSSPGLGRPLKKDKDFDRNMGNEIEVHLYRAVDRQKQLVGLLKAYNADTITI 123 Query: 146 EKEKRGEKDMNELQIAI 162 E E E D++ + +++ Sbjct: 124 ENEDGSETDIDRVNVSL 140 >gi|304316866|ref|YP_003852011.1| hypothetical protein Tthe_1413 [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778368|gb|ADL68927.1| protein of unknown function DUF150 [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 151 Score = 70.9 bits (172), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 81/137 (59%), Gaps = 3/137 (2%) Query: 27 SVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENI 85 +++ P IE+ +F V + +E N L+++++++ G ++L DC+ +S+ +S LD + Sbjct: 10 NLVAPAIEKNNFELVDVEYKKEGNNWYLRVYIDKE-GGVSLDDCQIISEYLSEKLDEVDP 68 Query: 86 IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG-TSETGFF 144 IE Y LEVSSPGIDRP+ + DF ++ G +V + K+K G+++G ++ Sbjct: 69 IENSYILEVSSPGIDRPLKTQRDFDKFKGSLVEVSLYQPIDKKKKYEGELVGLINDKVVI 128 Query: 145 LEKEKRGEKDMNELQIA 161 + +R E D+N++ + Sbjct: 129 TDNGERKEFDINDISLV 145 >gi|54040273|sp|P67219|RIMP_SALTI RecName: Full=Ribosome maturation factor rimP gi|54042668|sp|P67218|RIMP_SALTY RecName: Full=Ribosome maturation factor rimP gi|91208382|sp|Q57JH7|RIMP_SALCH RecName: Full=Ribosome maturation factor rimP gi|91208383|sp|Q5PLA8|RIMP_SALPA RecName: Full=Ribosome maturation factor rimP gi|259586212|sp|A9N734|RIMP_SALPB RecName: Full=Ribosome maturation factor rimP gi|259586213|sp|C0PZ56|RIMP_SALPC RecName: Full=Ribosome maturation factor rimP gi|259586214|sp|B5BGJ7|RIMP_SALPK RecName: Full=Ribosome maturation factor rimP gi|259586216|sp|B5QZW0|RIMP_SALEP RecName: Full=Ribosome maturation factor rimP gi|259586218|sp|A9MP34|RIMP_SALAR RecName: Full=Ribosome maturation factor rimP gi|323131648|gb|ADX19078.1| Ribosome maturation factor rimP [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 152 Score = 70.9 bits (172), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 69/120 (57%), Gaps = 4/120 (3%) Query: 19 MGLAG---DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 MGL+ ++ +I +E + + V I + + L+I+++ +DG + + DC ++S Sbjct: 1 MGLSTLEQKLTEMITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LEVSSPG+DRPM + R+ G VA + ++ +++K G I Sbjct: 60 VSAVLDVEDPISVAYNLEVSSPGLDRPMFTADHYARFQGEEVALVLRMAVQNRRKWQGII 119 >gi|194445687|ref|YP_002042545.1| hypothetical protein SNSL254_A3546 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|195873562|ref|ZP_02697406.2| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197248900|ref|YP_002148214.1| hypothetical protein SeAg_B3477 [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197264321|ref|ZP_03164395.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197301026|ref|ZP_02663047.2| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204928262|ref|ZP_03219462.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205357196|ref|ZP_02345817.2| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205357561|ref|ZP_02571247.2| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205359197|ref|ZP_02668054.2| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205360600|ref|ZP_02684674.2| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|259586187|sp|B5F6U0|RIMP_SALA4 RecName: Full=Ribosome maturation factor rimP gi|259586193|sp|B4TJ08|RIMP_SALHS RecName: Full=Ribosome maturation factor rimP gi|259586194|sp|B4T700|RIMP_SALNS RecName: Full=Ribosome maturation factor rimP gi|62129432|gb|AAX67135.1| Hypothetical protein yhbC [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194404350|gb|ACF64572.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194409325|gb|ACF69544.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195633168|gb|EDX51582.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197212603|gb|ACH50000.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197242576|gb|EDY25196.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289178|gb|EDY28547.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204322584|gb|EDZ07781.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205323251|gb|EDZ11090.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205331278|gb|EDZ18042.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205337765|gb|EDZ24529.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205348549|gb|EDZ35180.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 154 Score = 70.9 bits (172), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 65/111 (58%), Gaps = 1/111 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I +E + + V I + + L+I+++ +DG + + DC ++S +S +LDVE+ Sbjct: 12 LTEMITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVED 70 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I Y LEVSSPG+DRPM + R+ G VA + ++ +++K G I Sbjct: 71 PISVAYNLEVSSPGLDRPMFTADHYARFQGEEVALVLRMAVQNRRKWQGII 121 >gi|146297078|ref|YP_001180849.1| hypothetical protein Csac_2073 [Caldicellulosiruptor saccharolyticus DSM 8903] gi|226701152|sp|A4XL73|RIMP_CALS8 RecName: Full=Ribosome maturation factor rimP gi|145410654|gb|ABP67658.1| protein of unknown function DUF150 [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 151 Score = 70.9 bits (172), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 70/117 (59%), Gaps = 2/117 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +++P++E+ F V I +E K L++++++ G +T+ DC+ +S+ +S LD+ Sbjct: 8 VEELVKPILEKYGFDLVDIEFKKEGKKHFLRVYIDKP-GGITIDDCQLVSEELSNKLDIV 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + I Y LEVSSPG+DRP+V DF+R G VV + + KL G+++ +E Sbjct: 67 DPIPFSYYLEVSSPGVDRPLVNDRDFIRNKGRVVDVFLKQPIMNTTKLTGELVEKNE 123 >gi|15605802|ref|NP_213179.1| hypothetical protein aq_260 [Aquifex aeolicus VF5] gi|6647906|sp|O66619|RIMP_AQUAE RecName: Full=Ribosome maturation factor rimP gi|2982974|gb|AAC06588.1| hypothetical protein aq_260 [Aquifex aeolicus VF5] Length = 158 Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 83/155 (53%), Gaps = 20/155 (12%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +++PVI M F+ + E + +L+I +++ G +T++DCEE+S+ +S +LDVE Sbjct: 12 VKEIVEPVIRGMGFKLFDVEFKPEGRGWVLRIIADKE-GGITIKDCEEISRKVSALLDVE 70 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK--IMGTSET 141 +II Y LE++SPG+ RP+ + + + G +V KLI K I G E Sbjct: 71 DIIPFSYLLEITSPGLTRPLTKVEHYDFFKGRLV------------KLILKEPIEGKREV 118 Query: 142 GFFLEKEKRGEKDMNELQ----IAISFDSLLSARL 172 ++E K G D+ E + + I F ++ RL Sbjct: 119 VGYIEDVKNGIIDIREKEKGKVLHIPFSAIAKGRL 153 >gi|229168556|ref|ZP_04296279.1| hypothetical protein bcere0007_35130 [Bacillus cereus AH621] gi|228614962|gb|EEK72064.1| hypothetical protein bcere0007_35130 [Bacillus cereus AH621] Length = 164 Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 89/166 (53%), Gaps = 12/166 (7%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEEL 72 R+F D + + + QP++EE++ V + ++E ++ L++F++ + G + + +C + Sbjct: 6 RLFMDKKVTEIVEAFAQPIVEELNLELVDVEYVQEGQDWFLRVFIDSEKG-VEIEECGAV 64 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+ +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ Sbjct: 65 SERLSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYKPIDGEKMFE 124 Query: 133 GKIM---GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 GK++ GT+ T K ++ E I I D + +ARL VT Sbjct: 125 GKLLSYDGTTITLLLTIKTRKKE-------IQIPMDKVANARLAVT 163 >gi|161353583|ref|NP_462201.2| hypothetical protein STM3288 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161486781|ref|NP_806884.2| hypothetical protein t3206 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|161501916|ref|NP_457670.2| hypothetical protein STY3469 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|161936211|ref|YP_152295.2| hypothetical protein SPA3156 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|162139540|ref|YP_218216.2| hypothetical protein SC3229 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194470097|ref|ZP_03076081.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194735644|ref|YP_002116238.1| hypothetical protein SeSA_A3478 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|198245424|ref|YP_002217261.1| hypothetical protein SeD_A3645 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200387280|ref|ZP_03213892.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205358508|ref|ZP_02656955.2| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205359739|ref|ZP_02831643.2| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|213052983|ref|ZP_03345861.1| hypothetical protein Salmoneentericaenterica_08732 [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425431|ref|ZP_03358181.1| hypothetical protein SentesTyphi_07043 [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213581726|ref|ZP_03363552.1| hypothetical protein SentesTyph_11179 [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213621933|ref|ZP_03374716.1| hypothetical protein SentesTyp_32176 [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213645860|ref|ZP_03375913.1| hypothetical protein SentesTy_00020 [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|228879515|ref|YP_001573258.2| hypothetical protein SARI_04336 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|229307088|ref|YP_001590259.2| hypothetical protein SPAB_04100 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|229597265|ref|YP_002047317.2| hypothetical protein SeHA_C3583 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|259586191|sp|B5FI15|RIMP_SALDC RecName: Full=Ribosome maturation factor rimP gi|259586195|sp|B4TWE0|RIMP_SALSV RecName: Full=Ribosome maturation factor rimP gi|194456461|gb|EDX45300.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711146|gb|ACF90367.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197939940|gb|ACH77273.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199604378|gb|EDZ02923.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205333894|gb|EDZ20658.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205343499|gb|EDZ30263.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|267995485|gb|ACY90370.1| hypothetical protein STM14_3971 [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|320087735|emb|CBY97499.1| UPF0090 protein yhbC [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322716286|gb|EFZ07857.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|326625039|gb|EGE31384.1| phage shock protein A [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 150 Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 65/111 (58%), Gaps = 1/111 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I +E + + V I + + L+I+++ +DG + + DC ++S +S +LDVE+ Sbjct: 8 LTEMITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVED 66 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I Y LEVSSPG+DRPM + R+ G VA + ++ +++K G I Sbjct: 67 PISVAYNLEVSSPGLDRPMFTADHYARFQGEEVALVLRMAVQNRRKWQGII 117 >gi|115372720|ref|ZP_01460026.1| YlxS [Stigmatella aurantiaca DW4/3-1] gi|115370201|gb|EAU69130.1| YlxS [Stigmatella aurantiaca DW4/3-1] Length = 249 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 38/146 (26%), Positives = 77/146 (52%), Gaps = 8/146 (5%) Query: 27 SVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVENI 85 ++++P++ + + + E+ +L++F+++ G + L +C ++S+A+ P LDVE++ Sbjct: 104 TLLEPIVAGEGLELIDLEFVREREGWVLRLFIDKPGGRVGLDECSQVSRAVDPALDVEDL 163 Query: 86 IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD--KQKLIGKIMGTSETGF 143 + Y LEVSSPG++RP+ + S + R G V + GD ++ G + + G Sbjct: 164 VPNEYNLEVSSPGVNRPLKKLSHYERVKGQKVKVKTFGPIGDPPRKNFSGTLTEVTAEGI 223 Query: 144 FLEKEKRGE-----KDMNELQIAISF 164 +E E G KD+ + + F Sbjct: 224 AVEVEGAGAFRIPLKDIAKANLEFEF 249 >gi|196247597|ref|ZP_03146299.1| protein of unknown function DUF150 [Geobacillus sp. G11MC16] gi|259585816|sp|A4IMD3|RIMP_GEOTN RecName: Full=Ribosome maturation factor rimP gi|196212381|gb|EDY07138.1| protein of unknown function DUF150 [Geobacillus sp. G11MC16] Length = 157 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 82/152 (53%), Gaps = 8/152 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ P++ EM V I ++E KN L++F++ DDG + + C +S+ +S LD Sbjct: 9 VEQLVTPILNEMGLELVDIEYVKEGKNWFLRVFIDSDDG-VDIEQCGVVSEKLSEKLDEV 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNG-HVVACEIVLSSGDKQKLIGKIMGTSETG 142 + I +Y LEVSSPG +RP+ + DF++ G HV +G+KQ G++ T Sbjct: 68 DPIPHNYFLEVSSPGAERPLKNEKDFVKAIGKHVYIKTYEPIAGEKQ-FEGELTAFDGTT 126 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L + RG + +AI ++ + SARL V Sbjct: 127 VTLSVKDRGRQKT----VAIPYEKVASARLAV 154 >gi|126698904|ref|YP_001087801.1| hypothetical protein CD1306 [Clostridium difficile 630] gi|254974852|ref|ZP_05271324.1| hypothetical protein CdifQC_06040 [Clostridium difficile QCD-66c26] gi|255092239|ref|ZP_05321717.1| hypothetical protein CdifC_06222 [Clostridium difficile CIP 107932] gi|255100325|ref|ZP_05329302.1| hypothetical protein CdifQCD-6_05917 [Clostridium difficile QCD-63q42] gi|255306263|ref|ZP_05350435.1| hypothetical protein CdifA_06705 [Clostridium difficile ATCC 43255] gi|255313979|ref|ZP_05355562.1| hypothetical protein CdifQCD-7_06500 [Clostridium difficile QCD-76w55] gi|255516659|ref|ZP_05384335.1| hypothetical protein CdifQCD-_06064 [Clostridium difficile QCD-97b34] gi|255649758|ref|ZP_05396660.1| hypothetical protein CdifQCD_06184 [Clostridium difficile QCD-37x79] gi|260682914|ref|YP_003214199.1| hypothetical protein CD196_1169 [Clostridium difficile CD196] gi|260686512|ref|YP_003217645.1| hypothetical protein CDR20291_1147 [Clostridium difficile R20291] gi|306519863|ref|ZP_07406210.1| hypothetical protein CdifQ_07217 [Clostridium difficile QCD-32g58] gi|123363595|sp|Q18BH3|RIMP_CLOD6 RecName: Full=Ribosome maturation factor rimP gi|115250341|emb|CAJ68163.1| conserved hypothetical protein [Clostridium difficile] gi|260209077|emb|CBA62221.1| conserved hypothetical protein [Clostridium difficile CD196] gi|260212528|emb|CBE03478.1| conserved hypothetical protein [Clostridium difficile R20291] Length = 153 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 74/122 (60%), Gaps = 2/122 (1%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISP 78 L I ++ + +E F V + ++E L++++++++G ++L +CE +S+ +SP Sbjct: 4 NLEATIEEIVTKITDEHGFEMVDVEYVKEAGEYYLRVYIDKEEG-ISLNECELVSRELSP 62 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 ILD ++ I+ +Y LEVSSPG+DR + + DF+R+ G V ++ ++ G+++G Sbjct: 63 ILDEKDPIKENYFLEVSSPGLDRALKKDRDFVRYQGRDVDLKLYKPLNGCKQFEGELVGL 122 Query: 139 SE 140 +E Sbjct: 123 TE 124 >gi|268686951|ref|ZP_06153813.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|268627235|gb|EEZ59635.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] Length = 149 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 70/119 (58%), Gaps = 5/119 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 +G + DI ++++ + + + V L + L ++F++++ G +T+ DC +S +S Sbjct: 3 IGSSMDIQTILEKTLPGLGYELVDFELTAQGTL--RVFIDKE-GGITVEDCATVSNHLSR 59 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 + VE+I G+ LE+SSPG+DRP+ + +DF+R+ G + L G ++ IGKI G Sbjct: 60 VFMVEDI--GYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIGGQKNFIGKIEG 116 >gi|269103409|ref|ZP_06156106.1| UPF0090 domain-containing protein [Photobacterium damselae subsp. damselae CIP 102761] gi|268163307|gb|EEZ41803.1| UPF0090 domain-containing protein [Photobacterium damselae subsp. damselae CIP 102761] Length = 151 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 75/120 (62%), Gaps = 2/120 (1%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 L ++ +++P + + + V + + ++ L+IF+++++G + + DC E+S+ +S Sbjct: 3 ALETQLTEMLEPSVAALGYELVGLEFIRAGEHSTLRIFIDKENG-INVEDCAEVSRQVSA 61 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 ++DVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ G+++K G I+ Sbjct: 62 VMDVEDPITVAYNLEVSSPGLERPLFKAAHYEQFIGHEVSLVLKMAMGNRRKWKGDIVAV 121 >gi|194099045|ref|YP_002002126.1| hypothetical protein NGK_1501 [Neisseria gonorrhoeae NCCP11945] gi|193934335|gb|ACF30159.1| UPF0090 protein [Neisseria gonorrhoeae NCCP11945] Length = 205 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 70/119 (58%), Gaps = 5/119 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 +G + DI ++++ + + + V L + L ++F++++ G +T+ DC +S +S Sbjct: 59 IGSSMDIQTILEKTLPGLGYELVDFELAAQGTL--RVFIDKE-GGITVEDCATVSNHLSR 115 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 + VE+I G+ LE+SSPG+DRP+ + +DF+R+ G + L G ++ IGKI G Sbjct: 116 VFMVEDI--GYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIGGQKNFIGKIEG 172 >gi|149375757|ref|ZP_01893525.1| hypothetical protein MDG893_04092 [Marinobacter algicola DG893] gi|149359882|gb|EDM48338.1| hypothetical protein MDG893_04092 [Marinobacter algicola DG893] Length = 153 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 68/114 (59%), Gaps = 1/114 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +++P++E + + I + + LL+IF++ + + + DCE++S+ S ++DVE Sbjct: 8 LEELLRPIVEGLGYEFWGIEFRSQGHHSLLRIFIDDAENGIGIEDCEKVSRQASGVMDVE 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 + I+ Y LEVSSPG+DRP+ R + + GH V ++ ++ ++K G I G Sbjct: 68 DPIQTEYTLEVSSPGMDRPLFRLEQYEAFAGHQVQIKLRMAFEGRRKFQGLIKG 121 >gi|317051741|ref|YP_004112857.1| hypothetical protein Selin_1571 [Desulfurispirillum indicum S5] gi|316946825|gb|ADU66301.1| protein of unknown function DUF150 [Desulfurispirillum indicum S5] Length = 155 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 81/131 (61%), Gaps = 9/131 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 +S ++QP+++E++ + L+ +L+++++++ G ++L +CE +S + +LDVE+ Sbjct: 10 VSELLQPIVQELALELFDVELINASGWILRVYLDKE-GGVSLDECERVSIELGTLLDVED 68 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV---ACEIVLSSGDKQKL-IGKIMGTSE 140 II Y LEVSSPG++R + ++DF ++ G + E++L++ KL IG + S+ Sbjct: 69 IIGFRYTLEVSSPGVNRKLRHRADFEKYLGRLARIRTSEVLLNT----KLHIGYLADISD 124 Query: 141 TGFFLEKEKRG 151 T + ++ RG Sbjct: 125 TELTIREKDRG 135 >gi|255655318|ref|ZP_05400727.1| hypothetical protein CdifQCD-2_06375 [Clostridium difficile QCD-23m63] gi|296451303|ref|ZP_06893043.1| protein of hypothetical function DUF150 [Clostridium difficile NAP08] gi|296880345|ref|ZP_06904308.1| protein of hypothetical function DUF150 [Clostridium difficile NAP07] gi|296259909|gb|EFH06764.1| protein of hypothetical function DUF150 [Clostridium difficile NAP08] gi|296428586|gb|EFH14470.1| protein of hypothetical function DUF150 [Clostridium difficile NAP07] Length = 153 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 74/122 (60%), Gaps = 2/122 (1%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISP 78 L I ++ + +E F V + ++E L++++++++G ++L +CE +S+ +SP Sbjct: 4 NLEATIEEIVTKITDEHGFEMVDVEYVKEAGEYYLRVYIDKEEG-ISLNECELVSRELSP 62 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 ILD ++ I+ +Y LEVSSPG+DR + + DF+R+ G V ++ ++ G+++G Sbjct: 63 ILDEKDPIKENYFLEVSSPGLDRALKKDRDFVRYQGRDVDLKLYKPLNGCKQFEGELVGL 122 Query: 139 SE 140 +E Sbjct: 123 TE 124 >gi|317493624|ref|ZP_07952045.1| yhbC protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918567|gb|EFV39905.1| yhbC protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 152 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 70/120 (58%), Gaps = 4/120 (3%) Query: 19 MGLAG---DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 MGL+ ++ +I +E + F V I + + L+I+++ D+G + + DC ++S Sbjct: 1 MGLSTLEQKLTEMISAPVEALGFELVGIEFIRSHHSTLRIYIDSDEG-INVDDCADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LEVSSPG+DRPM ++R+ G V+ + ++ +++K G I Sbjct: 60 VSAVLDVEDPITVAYNLEVSSPGLDRPMFTADHYVRFMGEEVSLVLRMAVQNRRKWQGII 119 >gi|59801638|ref|YP_208350.1| hypothetical protein NGO1284 [Neisseria gonorrhoeae FA 1090] gi|254494078|ref|ZP_05107249.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268595171|ref|ZP_06129338.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268597520|ref|ZP_06131687.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268599675|ref|ZP_06133842.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268604050|ref|ZP_06138217.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268682509|ref|ZP_06149371.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268684673|ref|ZP_06151535.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|293398727|ref|ZP_06642903.1| hypothetical protein NGNG_02048 [Neisseria gonorrhoeae F62] gi|75355764|sp|Q5F799|RIMP_NEIG1 RecName: Full=Ribosome maturation factor rimP gi|259585809|sp|B4RMZ1|RIMP_NEIG2 RecName: Full=Ribosome maturation factor rimP gi|59718533|gb|AAW89938.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090] gi|226513118|gb|EEH62463.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268548560|gb|EEZ43978.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268551308|gb|EEZ46327.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268583806|gb|EEZ48482.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268588181|gb|EEZ52857.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268622793|gb|EEZ55193.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268624957|gb|EEZ57357.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|291610867|gb|EFF39966.1| hypothetical protein NGNG_02048 [Neisseria gonorrhoeae F62] Length = 149 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 70/119 (58%), Gaps = 5/119 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 +G + DI ++++ + + + V L + L ++F++++ G +T+ DC +S +S Sbjct: 3 IGSSMDIQTILEKTLPGLGYELVDFELAAQGTL--RVFIDKE-GGITVEDCATVSNHLSR 59 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 + VE+I G+ LE+SSPG+DRP+ + +DF+R+ G + L G ++ IGKI G Sbjct: 60 VFMVEDI--GYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIGGQKNFIGKIEG 116 >gi|229174483|ref|ZP_04302015.1| hypothetical protein bcere0006_35760 [Bacillus cereus MM3] gi|228609043|gb|EEK66333.1| hypothetical protein bcere0006_35760 [Bacillus cereus MM3] Length = 164 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 89/166 (53%), Gaps = 12/166 (7%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEEL 72 R+F D + + + QP++EE++ V + ++E ++ L++F++ + G + + +C + Sbjct: 6 RLFMDKKVTEVVEAFAQPIVEELNLELVDVEYVQEGQDWFLRVFIDSEKG-VDIEECGAV 64 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+ +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ Sbjct: 65 SERLSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMFE 124 Query: 133 GKIM---GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 GK++ GT+ T K ++ E I I D + +ARL VT Sbjct: 125 GKLLSYDGTTITLLLTIKTRKKE-------IQIPMDKVANARLAVT 163 >gi|138894779|ref|YP_001125232.1| hypothetical protein GTNG_1113 [Geobacillus thermodenitrificans NG80-2] gi|134266292|gb|ABO66487.1| Conserved hypothetical protein [Geobacillus thermodenitrificans NG80-2] Length = 170 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 82/152 (53%), Gaps = 8/152 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ P++ EM V I ++E KN L++F++ DDG + + C +S+ +S LD Sbjct: 22 VEQLVTPILNEMGLELVDIEYVKEGKNWFLRVFIDSDDG-VDIEQCGVVSEKLSEKLDEV 80 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNG-HVVACEIVLSSGDKQKLIGKIMGTSETG 142 + I +Y LEVSSPG +RP+ + DF++ G HV +G+KQ G++ T Sbjct: 81 DPIPHNYFLEVSSPGAERPLKNEKDFVKAIGKHVYIKTYEPIAGEKQ-FEGELTAFDGTT 139 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L + RG + +AI ++ + SARL V Sbjct: 140 VTLSVKDRGRQKT----VAIPYEKVASARLAV 167 >gi|261342616|ref|ZP_05970474.1| hypothetical protein ENTCAN_09187 [Enterobacter cancerogenus ATCC 35316] gi|296104884|ref|YP_003615030.1| YhbC-like protein [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|288315264|gb|EFC54202.1| hypothetical protein ENTCAN_09187 [Enterobacter cancerogenus ATCC 35316] gi|295059343|gb|ADF64081.1| YhbC-like protein [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 140 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 36/107 (33%), Positives = 63/107 (58%), Gaps = 1/107 (0%) Query: 29 IQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEG 88 I +E + + V I + + L+I+++ +DG + + DC ++S +S +LDVE+ I Sbjct: 2 ITAPVEALGYELVGIEFVRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVEDPITV 60 Query: 89 HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 Y LEVSSPG+DRPM ++R+ G VA + ++ +++K G I Sbjct: 61 AYNLEVSSPGLDRPMFTAEHYVRFTGEEVALVLRMAVQNRRKWQGII 107 >gi|120556257|ref|YP_960608.1| hypothetical protein Maqu_3350 [Marinobacter aquaeolei VT8] gi|166990772|sp|A1U602|RIMP_MARAV RecName: Full=Ribosome maturation factor rimP gi|120326106|gb|ABM20421.1| protein of unknown function DUF150 [Marinobacter aquaeolei VT8] Length = 153 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 68/115 (59%), Gaps = 1/115 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +++PV+E + + I + L++F++ + + + DCE++S+ +S ++DVE Sbjct: 8 LEDILRPVVEGLGYEFWGIEFRSHGHHSKLRVFIDDAENGIAIDDCEKVSRQVSGVMDVE 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 + I+ Y LEVSSPG+DRP+ R + + GH V ++ ++ ++K +G I G Sbjct: 68 DPIQTEYTLEVSSPGMDRPLFRLEQYEAFIGHKVQIKLRMAFEGRRKFLGLIKGV 122 >gi|317129166|ref|YP_004095448.1| hypothetical protein Bcell_2460 [Bacillus cellulosilyticus DSM 2522] gi|315474114|gb|ADU30717.1| protein of unknown function DUF150 [Bacillus cellulosilyticus DSM 2522] Length = 154 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 82/158 (51%), Gaps = 6/158 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M + ++ +++P++++MS V I +E KN L+++++RD G + L DC +S+ +S Sbjct: 1 MSIREEVEVLVEPILQQMSLELVDIEYKKEGKNWFLRVYIDRD-GGVDLDDCTAVSEQLS 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + I+ Y LEVSSPG +RP+ + D +R G + ++ GK+M Sbjct: 60 EALDKHDPIDQMYYLEVSSPGAERPLKTEQDIVRAVGKYINVTTYAPIDGEKVFEGKLMH 119 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 ++ +E + + EL +D + ARL + Sbjct: 120 FNDGILSMETKVKTRVKTVEL----PYDKIAKARLAIV 153 >gi|312898334|ref|ZP_07757724.1| conserved hypothetical protein [Megasphaera micronuciformis F0359] gi|310620253|gb|EFQ03823.1| conserved hypothetical protein [Megasphaera micronuciformis F0359] Length = 153 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 80/145 (55%), Gaps = 6/145 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 +S ++ +I V + + E++ L++F++++ G + L DC+ +S+ +S LDV++ Sbjct: 10 VSQEVETIIAGTDLELVDVEYVRERDWYLRVFIDKE-GGVGLEDCQAVSEKLSEFLDVKD 68 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG-- 142 I Y LEVSSPG+DR + + +DF+R+ V + L +++G ++G Sbjct: 69 PITDKYLLEVSSPGLDRILKKDTDFVRYKDRHVDVHFFTPYKGVKSLTARLVGKDKSGVV 128 Query: 143 -FFLEKEKRG--EKDMNELQIAISF 164 +++E KD++++++ I F Sbjct: 129 HLLIDEEDAAIDSKDISQIRLHIDF 153 >gi|156935696|ref|YP_001439612.1| hypothetical protein ESA_03563 [Cronobacter sakazakii ATCC BAA-894] gi|259585769|sp|A7MQE3|RIMP_ENTS8 RecName: Full=Ribosome maturation factor rimP gi|156533950|gb|ABU78776.1| hypothetical protein ESA_03563 [Cronobacter sakazakii ATCC BAA-894] Length = 160 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 65/111 (58%), Gaps = 1/111 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I +E + + V I + + L+I+++ +DG +T+ DC ++S +S +LDVE+ Sbjct: 18 LTEMITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDG-ITVDDCADVSHQVSSVLDVED 76 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I Y LEVSSPG+DRP+ + R+ G V + ++ +++K G I Sbjct: 77 PITVAYNLEVSSPGLDRPLFTAEHYARYTGEEVTLVLRMAVQNRRKWQGII 127 >gi|217970107|ref|YP_002355341.1| hypothetical protein Tmz1t_1690 [Thauera sp. MZ1T] gi|217507434|gb|ACK54445.1| protein of unknown function DUF150 [Thauera sp. MZ1T] Length = 144 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 81/153 (52%), Gaps = 12/153 (7%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + D+ +I+ V+ + + V I K LL++F++ + G +T+ DC +S + + Sbjct: 1 MRADVEGLIEQVVTGLGYELVDIEF-SPKGRLLRVFLDIERG-ITVDDCATVSNQLQRVF 58 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 +VEN+ + RLEVSSPG+DRP+ + +DF R+ G + L G+++ +G I + Sbjct: 59 EVENV--DYDRLEVSSPGLDRPLKKLADFERFAGEQAQVRLSLPIGNQRNFVGVIERVQD 116 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L EK GE + + FD + ARL+ Sbjct: 117 GAVALRTEK-GE-------VLLPFDDIEKARLV 141 >gi|269797843|ref|YP_003311743.1| hypothetical protein Vpar_0782 [Veillonella parvula DSM 2008] gi|269094472|gb|ACZ24463.1| protein of unknown function DUF150 [Veillonella parvula DSM 2008] Length = 152 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 70/117 (59%), Gaps = 1/117 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 +SSV++ +I V + + E++ L++++++ G + L DC+ +S+ +S +LD ++ Sbjct: 10 VSSVVEGIIAGTDMELVDVDYVRERDWYLRVYLDKP-GGVDLDDCQLVSEKLSAVLDEKD 68 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 I +Y LEVSSPG+DR + + D +R+NG V ++ + ++ G + G ++T Sbjct: 69 PITENYLLEVSSPGLDRVLKKDKDLVRYNGRDVDIQLFKAINGSKQFTGALQGFTDT 125 >gi|94263058|ref|ZP_01286877.1| Protein of unknown function DUF150 [delta proteobacterium MLMS-1] gi|94272102|ref|ZP_01292068.1| Protein of unknown function DUF150 [delta proteobacterium MLMS-1] gi|93450238|gb|EAT01519.1| Protein of unknown function DUF150 [delta proteobacterium MLMS-1] gi|93456601|gb|EAT06709.1| Protein of unknown function DUF150 [delta proteobacterium MLMS-1] Length = 155 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 36/100 (36%), Positives = 61/100 (61%), Gaps = 2/100 (2%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQA 75 D L+ ++ ++QPV+E+ + E +L++ ++ DDG +TL DC +S+ Sbjct: 4 ADKALSARLTELLQPVVEDHGLELADLQFRREPAGWVLRLVIDGDDG-VTLDDCTRISRE 62 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGH 115 +S +L+VE+ IE + LEVSSPG+DRP+ R+ D+ R G Sbjct: 63 VSHLLEVEDPIEQAFNLEVSSPGLDRPLKREQDYRRCRGR 102 >gi|238760243|ref|ZP_04621388.1| hypothetical protein yaldo0001_39490 [Yersinia aldovae ATCC 35236] gi|238701566|gb|EEP94138.1| hypothetical protein yaldo0001_39490 [Yersinia aldovae ATCC 35236] Length = 152 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 68/120 (56%), Gaps = 4/120 (3%) Query: 19 MGLAG---DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 MGL+ ++ +I +E + + V I + + L+I+++ DDG +T+ C ++S Sbjct: 1 MGLSTLEQKLTEIISAPVEALGYELVGIEFIRGRQSTLRIYIDSDDG-ITVDACADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LEVSSPG+DRPM + R+ G V + ++ +++K G I Sbjct: 60 VSAVLDVEDPITVAYNLEVSSPGLDRPMFTAEHYTRYLGENVTLVLRMAMQNRRKWQGII 119 >gi|260596200|ref|YP_003208771.1| ribosome maturation protein RimP [Cronobacter turicensis z3032] gi|260215377|emb|CBA27399.1| UPF0090 protein yhbC [Cronobacter turicensis z3032] Length = 150 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 65/111 (58%), Gaps = 1/111 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I +E + + V I + + L+I+++ +DG +T+ DC ++S +S +LDVE+ Sbjct: 8 LTEMITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDG-ITVDDCADVSHQVSAVLDVED 66 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 + Y LEVSSPG+DRP+ + R+ G V + ++ +++K G I Sbjct: 67 PVTVAYNLEVSSPGLDRPLFTAEHYARYTGEEVTLVLRMAVQNRRKWQGVI 117 >gi|295097659|emb|CBK86749.1| Uncharacterized protein conserved in bacteria [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 140 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 36/107 (33%), Positives = 63/107 (58%), Gaps = 1/107 (0%) Query: 29 IQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEG 88 I +E + + V I + + L+I+++ +DG + + DC ++S +S +LDVE+ I Sbjct: 2 ITAPVEALGYELVGIEFVRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVEDPITV 60 Query: 89 HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 Y LEVSSPG+DRPM ++R+ G VA + ++ +++K G I Sbjct: 61 AYNLEVSSPGLDRPMFTDEHYVRFTGEEVALVLRMAVQNRRKWQGII 107 >gi|251780527|ref|ZP_04823447.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084842|gb|EES50732.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 153 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 65/94 (69%), Gaps = 1/94 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +++P++EE+S+ + ++E L+I++++++ +++L DCE++S+ +S +LDVE Sbjct: 10 VEVLVKPIVEELSYELYYLEYVKENGEYYLRIYIDKEEDSISLNDCEKVSRRVSEMLDVE 69 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + IE Y LEVSSPG++R + ++ F ++ G V Sbjct: 70 DPIEDSYYLEVSSPGLNRGLYKEEHFKKFIGREV 103 >gi|289449993|ref|YP_003474584.1| hypothetical protein HMPREF0868_0246 [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184540|gb|ADC90965.1| conserved hypothetical protein [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 155 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 70/132 (53%), Gaps = 2/132 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 +A S+ +I +M + V + ++E + L+ ++++ G + L DC E+S++I P+ Sbjct: 6 IAAQAESLCAKLINDMGYDLVDVEFVKEGPDRFLRFYIDKR-GGVGLDDCTEVSRSIDPL 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +D I+ Y LEVSSPG+DRP+ SD LR G V + + +K +G+I+ Sbjct: 65 IDENLTIDQAYYLEVSSPGLDRPLKTDSDLLRHQGEKVEVTLYQARDGHKKFVGEIVAVD 124 Query: 140 ETGFFLEKEKRG 151 + L E G Sbjct: 125 DGVLKLAVENMG 136 >gi|153997275|ref|ZP_02022375.1| hypothetical protein YPE_3717 [Yersinia pestis CA88-4125] gi|229839150|ref|ZP_04459309.1| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896639|ref|ZP_04511806.1| conserved protein [Yersinia pestis Pestoides A] gi|229899714|ref|ZP_04514855.1| conserved protein [Yersinia pestis biovar Orientalis str. India 195] gi|229903876|ref|ZP_04518989.1| conserved protein [Yersinia pestis Nepal516] gi|238787592|ref|ZP_04631390.1| hypothetical protein yfred0001_21120 [Yersinia frederiksenii ATCC 33641] gi|238793020|ref|ZP_04636649.1| hypothetical protein yinte0001_33150 [Yersinia intermedia ATCC 29909] gi|34223130|sp|Q8ZBC0|RIMP_YERPE RecName: Full=Ribosome maturation factor rimP gi|81640534|sp|Q66F62|RIMP_YERPS RecName: Full=Ribosome maturation factor rimP gi|51588112|emb|CAH19718.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP 32953] gi|115349123|emb|CAL22086.1| conserved hypothetical protein [Yersinia pestis CO92] gi|149288912|gb|EDM38992.1| hypothetical protein YPE_3717 [Yersinia pestis CA88-4125] gi|229679646|gb|EEO75749.1| conserved protein [Yersinia pestis Nepal516] gi|229687206|gb|EEO79281.1| conserved protein [Yersinia pestis biovar Orientalis str. India 195] gi|229695516|gb|EEO85563.1| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700417|gb|EEO88449.1| conserved protein [Yersinia pestis Pestoides A] gi|238724379|gb|EEQ16021.1| hypothetical protein yfred0001_21120 [Yersinia frederiksenii ATCC 33641] gi|238727620|gb|EEQ19145.1| hypothetical protein yinte0001_33150 [Yersinia intermedia ATCC 29909] gi|320013701|gb|ADV97272.1| conserved protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 152 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 68/120 (56%), Gaps = 4/120 (3%) Query: 19 MGLAG---DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 MGL+ ++ +I +E + + V I + + L+I+++ DDG +T+ C ++S Sbjct: 1 MGLSTLEQKLTEIISAPVEALGYELVGIEFIRGRQSTLRIYIDSDDG-ITVDACADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LEVSSPG+DRPM + R+ G V + ++ +++K G I Sbjct: 60 VSAVLDVEDPITVAYNLEVSSPGLDRPMFTAEHYTRYLGEEVTLVLRMAMQNRRKWQGII 119 >gi|119898400|ref|YP_933613.1| hypothetical protein azo2109 [Azoarcus sp. BH72] gi|259585699|sp|A1K7C1|RIMP_AZOSB RecName: Full=Ribosome maturation factor rimP gi|119670813|emb|CAL94726.1| conserved hypothetical protein [Azoarcus sp. BH72] Length = 144 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 84/153 (54%), Gaps = 12/153 (7%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + ++++ V+ + + V L K LL++F++ + G +T+ DC +S ++ + Sbjct: 1 MQAGVENLVEQVVSGLGYELVDFEL-SPKGRLLRVFIDIERG-VTVDDCATVSNQLTRVF 58 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 +VEN+ + RLEVSSPG+DRP+ + +DF R+ G + + L G+++ +G + G E Sbjct: 59 EVENV--DYDRLEVSSPGLDRPLKKLADFERFAGQEIQLRLSLPIGNQRNFVGVLQGVRE 116 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + L EK GE + F+ + ARL+ Sbjct: 117 SSVVLLTEK-GE-------LLAPFEEIEKARLV 141 >gi|313893703|ref|ZP_07827270.1| conserved hypothetical protein [Veillonella sp. oral taxon 158 str. F0412] gi|313441717|gb|EFR60142.1| conserved hypothetical protein [Veillonella sp. oral taxon 158 str. F0412] Length = 152 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 69/117 (58%), Gaps = 1/117 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 +SSV++ +I V + + E++ L++++++ G + L DC+ +S+ +S +LD ++ Sbjct: 10 VSSVVEGIIAGTDMELVDVDYVRERDWYLRVYLDKP-GGVDLDDCQLVSEKLSAVLDEKD 68 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 I +Y LEVSSPG+DR + + D +R+NG V ++ ++ G + G ++T Sbjct: 69 PITENYLLEVSSPGLDRVLKKDKDLIRYNGRDVDIQLFKPVNGSKQFTGALQGFTDT 125 >gi|288933402|ref|YP_003437461.1| hypothetical protein Kvar_0519 [Klebsiella variicola At-22] gi|288888131|gb|ADC56449.1| protein of unknown function DUF150 [Klebsiella variicola At-22] Length = 152 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 69/120 (57%), Gaps = 4/120 (3%) Query: 19 MGLAG---DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 MGL+ ++ ++ +E + F V I + + L+I+++ +DG + + DC ++S Sbjct: 1 MGLSTLEQKLTEMLTAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S ++DVE+ I Y LEVSSPG+DRPM + R+ G VA + ++ +++K G I Sbjct: 60 VSAVMDVEDPITVAYNLEVSSPGLDRPMFTAEHYQRFTGEEVALVLRMAVQNRRKWQGII 119 >gi|310823423|ref|YP_003955781.1| hypothetical protein STAUR_6197 [Stigmatella aurantiaca DW4/3-1] gi|309396495|gb|ADO73954.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1] Length = 161 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 71/128 (55%), Gaps = 3/128 (2%) Query: 27 SVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVENI 85 ++++P++ + + + E+ +L++F+++ G + L +C ++S+A+ P LDVE++ Sbjct: 16 TLLEPIVAGEGLELIDLEFVREREGWVLRLFIDKPGGRVGLDECSQVSRAVDPALDVEDL 75 Query: 86 IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD--KQKLIGKIMGTSETGF 143 + Y LEVSSPG++RP+ + S + R G V + GD ++ G + + G Sbjct: 76 VPNEYNLEVSSPGVNRPLKKLSHYERVKGQKVKVKTFGPIGDPPRKNFSGTLTEVTAEGI 135 Query: 144 FLEKEKRG 151 +E E G Sbjct: 136 AVEVEGAG 143 >gi|167401220|ref|ZP_02306720.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|259645220|sp|A7FMS4|RIMP_YERP3 RecName: Full=Ribosome maturation factor rimP gi|21957404|gb|AAM84274.1|AE013671_1 hypothetical protein y0686 [Yersinia pestis KIM 10] gi|45435296|gb|AAS60855.1| conserved hypothetical protein [Yersinia pestis biovar Microtus str. 91001] gi|152961108|gb|ABS48569.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP 31758] gi|167049245|gb|EDR60653.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. UG05-0454] Length = 154 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 64/111 (57%), Gaps = 1/111 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I +E + + V I + + L+I+++ DDG +T+ C ++S +S +LDVE+ Sbjct: 12 LTEIISAPVEALGYELVGIEFIRGRQSTLRIYIDSDDG-ITVDACADVSHQVSAVLDVED 70 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I Y LEVSSPG+DRPM + R+ G V + ++ +++K G I Sbjct: 71 PITVAYNLEVSSPGLDRPMFTAEHYTRYLGEEVTLVLRMAMQNRRKWQGII 121 >gi|225027046|ref|ZP_03716238.1| hypothetical protein EUBHAL_01302 [Eubacterium hallii DSM 3353] gi|224955510|gb|EEG36719.1| hypothetical protein EUBHAL_01302 [Eubacterium hallii DSM 3353] Length = 162 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 78/149 (52%), Gaps = 6/149 (4%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + ++ P+IEE F V + + E N L+++ +++ G + + DC +S+A+ Sbjct: 15 IVAKTEELVTPIIEENHFELVDVEYVREGANWYLRVYADKE-GGINIDDCVLISRALEEK 73 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD E+ I Y LEVSSPG+ RP+ ++ DF R G V C++ + +++ G + + Sbjct: 74 LDAEDFISDAYILEVSSPGLGRPLKKEKDFKRSLGKSVECKLYKAINKQKEFEGILKDFT 133 Query: 140 ETGFFLEKEKR----GEKDMNELQIAISF 164 E +E E KD+ +++AI F Sbjct: 134 EDTVTIETEGNELVLDRKDIAMIRLAIDF 162 >gi|228902320|ref|ZP_04066477.1| hypothetical protein bthur0014_34980 [Bacillus thuringiensis IBL 4222] gi|228909641|ref|ZP_04073464.1| hypothetical protein bthur0013_37930 [Bacillus thuringiensis IBL 200] gi|228940905|ref|ZP_04103464.1| hypothetical protein bthur0008_35450 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228966762|ref|ZP_04127806.1| hypothetical protein bthur0004_35680 [Bacillus thuringiensis serovar sotto str. T04001] gi|228973834|ref|ZP_04134410.1| hypothetical protein bthur0003_35890 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980423|ref|ZP_04140733.1| hypothetical protein bthur0002_35910 [Bacillus thuringiensis Bt407] gi|229098286|ref|ZP_04229233.1| hypothetical protein bcere0020_35200 [Bacillus cereus Rock3-29] gi|229104379|ref|ZP_04235048.1| hypothetical protein bcere0019_35270 [Bacillus cereus Rock3-28] gi|229117303|ref|ZP_04246681.1| hypothetical protein bcere0017_35830 [Bacillus cereus Rock1-3] gi|229162753|ref|ZP_04290710.1| hypothetical protein bcere0009_35230 [Bacillus cereus R309803] gi|228620635|gb|EEK77504.1| hypothetical protein bcere0009_35230 [Bacillus cereus R309803] gi|228666203|gb|EEL21667.1| hypothetical protein bcere0017_35830 [Bacillus cereus Rock1-3] gi|228679077|gb|EEL33285.1| hypothetical protein bcere0019_35270 [Bacillus cereus Rock3-28] gi|228685184|gb|EEL39115.1| hypothetical protein bcere0020_35200 [Bacillus cereus Rock3-29] gi|228779243|gb|EEM27500.1| hypothetical protein bthur0002_35910 [Bacillus thuringiensis Bt407] gi|228785859|gb|EEM33862.1| hypothetical protein bthur0003_35890 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228792861|gb|EEM40419.1| hypothetical protein bthur0004_35680 [Bacillus thuringiensis serovar sotto str. T04001] gi|228818741|gb|EEM64807.1| hypothetical protein bthur0008_35450 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228849930|gb|EEM94761.1| hypothetical protein bthur0013_37930 [Bacillus thuringiensis IBL 200] gi|228857289|gb|EEN01792.1| hypothetical protein bthur0014_34980 [Bacillus thuringiensis IBL 4222] Length = 164 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 89/166 (53%), Gaps = 12/166 (7%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEEL 72 R+F D + + + QP++EE++ V + ++E ++ L++F++ + G + + +C + Sbjct: 6 RLFMDKKVTEVVEAFAQPIVEELNLELVDVEYVKEGQDWFLRVFIDSEKG-VDIEECGAV 64 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+ +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ Sbjct: 65 SERLSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMFE 124 Query: 133 GKIM---GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 GK++ GT+ T K ++ E I I D + +ARL VT Sbjct: 125 GKLLSYDGTTITLLLTIKTRKKE-------IQIPMDKVANARLAVT 163 >gi|65321144|ref|ZP_00394103.1| COG0779: Uncharacterized protein conserved in bacteria [Bacillus anthracis str. A2012] Length = 174 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 89/166 (53%), Gaps = 12/166 (7%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEEL 72 R+F D + + + QP++EE++ V + ++E ++ L++F++ + G + + +C + Sbjct: 16 RLFMDKKVTEVVEAFAQPIVEELNLELVDVEYVKEGQDWFLRVFIDSEKG-VDIEECGAV 74 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+ +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ Sbjct: 75 SERLSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMFE 134 Query: 133 GKIM---GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 GK++ GT+ T K ++ E I I D + +ARL VT Sbjct: 135 GKMLSYDGTTITLLLTIKTRKKE-------IQIPMDKVANARLAVT 173 >gi|322615293|gb|EFY12214.1| hypothetical protein SEEM315_15045 [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618348|gb|EFY15239.1| hypothetical protein SEEM971_03440 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622847|gb|EFY19691.1| hypothetical protein SEEM973_09985 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626831|gb|EFY23628.1| hypothetical protein SEEM974_17064 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631400|gb|EFY28160.1| hypothetical protein SEEM201_11154 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635333|gb|EFY32047.1| hypothetical protein SEEM202_21223 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643468|gb|EFY40031.1| hypothetical protein SEEM954_03710 [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647096|gb|EFY43597.1| hypothetical protein SEEM054_06288 [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648899|gb|EFY45344.1| hypothetical protein SEEM675_09177 [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655091|gb|EFY51402.1| hypothetical protein SEEM965_16526 [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657694|gb|EFY53962.1| hypothetical protein SEEM19N_17226 [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664190|gb|EFY60388.1| hypothetical protein SEEM801_14392 [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667473|gb|EFY63635.1| hypothetical protein SEEM507_15450 [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674721|gb|EFY70813.1| hypothetical protein SEEM877_12264 [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675646|gb|EFY71719.1| hypothetical protein SEEM867_11084 [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682282|gb|EFY78305.1| hypothetical protein SEEM180_00717 [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684885|gb|EFY80883.1| hypothetical protein SEEM600_02779 [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323191868|gb|EFZ77116.1| hypothetical protein SEEM581_13996 [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199027|gb|EFZ84124.1| hypothetical protein SEEM501_06456 [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204273|gb|EFZ89282.1| hypothetical protein SEEM460_13042 [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207620|gb|EFZ92567.1| hypothetical protein SEEM020_13687 [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211327|gb|EFZ96171.1| hypothetical protein SEEM6152_16965 [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214731|gb|EFZ99480.1| hypothetical protein SEEM0077_18874 [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221211|gb|EGA05637.1| hypothetical protein SEEM0047_04951 [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224048|gb|EGA08341.1| hypothetical protein SEEM0055_21925 [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230303|gb|EGA14422.1| hypothetical protein SEEM0052_18579 [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233279|gb|EGA17373.1| hypothetical protein SEEM3312_09406 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239316|gb|EGA23366.1| hypothetical protein SEEM5258_06940 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242433|gb|EGA26459.1| hypothetical protein SEEM1156_15792 [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246943|gb|EGA30909.1| ribosome maturation protein RimP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254124|gb|EGA37944.1| ribosome maturation protein RimP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255241|gb|EGA39018.1| ribosome maturation protein RimP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262704|gb|EGA46260.1| hypothetical protein SEEM8284_03071 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264014|gb|EGA47522.1| ribosome maturation protein RimP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269400|gb|EGA52855.1| ribosome maturation protein RimP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 140 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 63/108 (58%), Gaps = 1/108 (0%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I +E + + V I + + L+I+++ +DG + + DC ++S +S +LDVE+ I Sbjct: 1 MITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVEDPIS 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 Y LEVSSPG+DRPM + R+ G VA + ++ +++K G I Sbjct: 60 VAYNLEVSSPGLDRPMFTADHYARFQGEEVALVLRMAVQNRRKWQGII 107 >gi|108806046|ref|YP_649962.1| hypothetical protein YPA_0048 [Yersinia pestis Antiqua] gi|108813402|ref|YP_649169.1| hypothetical protein YPN_3242 [Yersinia pestis Nepal516] gi|145600794|ref|YP_001164870.1| hypothetical protein YPDSF_3547 [Yersinia pestis Pestoides F] gi|161484876|ref|NP_668023.2| hypothetical protein y0686 [Yersinia pestis KIM 10] gi|161511440|ref|NP_991978.2| hypothetical protein YP_0585 [Yersinia pestis biovar Microtus str. 91001] gi|161760591|ref|YP_069021.2| hypothetical protein YPTB0478 [Yersinia pseudotuberculosis IP 32953] gi|162419022|ref|YP_001608284.1| hypothetical protein YpAngola_A3991 [Yersinia pestis Angola] gi|166010175|ref|ZP_02231073.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. E1979001] gi|167420580|ref|ZP_02312333.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423588|ref|ZP_02315341.1| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170025947|ref|YP_001722452.1| hypothetical protein YPK_3732 [Yersinia pseudotuberculosis YPIII] gi|186893839|ref|YP_001870951.1| hypothetical protein YPTS_0508 [Yersinia pseudotuberculosis PB1/+] gi|218930512|ref|YP_002348387.1| hypothetical protein YPO3498 [Yersinia pestis CO92] gi|229294897|ref|YP_001402552.2| hypothetical protein YpsIP31758_3598 [Yersinia pseudotuberculosis IP 31758] gi|270489134|ref|ZP_06206208.1| conserved hypothetical protein [Yersinia pestis KIM D27] gi|294505369|ref|YP_003569431.1| hypothetical protein YPZ3_3260 [Yersinia pestis Z176003] gi|122383879|sp|Q1CC05|RIMP_YERPA RecName: Full=Ribosome maturation factor rimP gi|122384216|sp|Q1CEL1|RIMP_YERPN RecName: Full=Ribosome maturation factor rimP gi|259511439|sp|A4TRI5|RIMP_YERPP RecName: Full=Ribosome maturation factor rimP gi|259511440|sp|B1JLY2|RIMP_YERPY RecName: Full=Ribosome maturation factor rimP gi|259645221|sp|B2K2Q3|RIMP_YERPB RecName: Full=Ribosome maturation factor rimP gi|259645222|sp|A9R5A1|RIMP_YERPG RecName: Full=Ribosome maturation factor rimP gi|108777050|gb|ABG19569.1| hypothetical protein YPN_3242 [Yersinia pestis Nepal516] gi|108777959|gb|ABG12017.1| hypothetical protein YPA_0048 [Yersinia pestis Antiqua] gi|145212490|gb|ABP41897.1| hypothetical protein YPDSF_3547 [Yersinia pestis Pestoides F] gi|162351837|gb|ABX85785.1| conserved hypothetical protein [Yersinia pestis Angola] gi|165991082|gb|EDR43383.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166961386|gb|EDR57407.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167057758|gb|EDR67504.1| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752481|gb|ACA69999.1| protein of unknown function DUF150 [Yersinia pseudotuberculosis YPIII] gi|186696865|gb|ACC87494.1| protein of unknown function DUF150 [Yersinia pseudotuberculosis PB1/+] gi|262363435|gb|ACY60156.1| hypothetical protein YPD4_3252 [Yersinia pestis D106004] gi|262367190|gb|ACY63747.1| hypothetical protein YPD8_3075 [Yersinia pestis D182038] gi|270337638|gb|EFA48415.1| conserved hypothetical protein [Yersinia pestis KIM D27] gi|294355828|gb|ADE66169.1| hypothetical protein YPZ3_3260 [Yersinia pestis Z176003] Length = 150 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 64/111 (57%), Gaps = 1/111 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I +E + + V I + + L+I+++ DDG +T+ C ++S +S +LDVE+ Sbjct: 8 LTEIISAPVEALGYELVGIEFIRGRQSTLRIYIDSDDG-ITVDACADVSHQVSAVLDVED 66 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I Y LEVSSPG+DRPM + R+ G V + ++ +++K G I Sbjct: 67 PITVAYNLEVSSPGLDRPMFTAEHYTRYLGEEVTLVLRMAMQNRRKWQGII 117 >gi|197364150|ref|YP_002143787.1| hypothetical protein SSPA2946 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|207858538|ref|YP_002245189.1| hypothetical protein SEN3123 [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224585086|ref|YP_002638885.1| hypothetical protein SPC_3359 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238910083|ref|ZP_04653920.1| hypothetical protein SentesTe_02955 [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289825803|ref|ZP_06544971.1| hypothetical protein Salmonellentericaenterica_10351 [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25302491|pir||AB0902 conserved hypothetical protein STY3469 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16421847|gb|AAL22160.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16504356|emb|CAD07808.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29139176|gb|AAO70744.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56129477|gb|AAV78983.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|160867493|gb|ABX24116.1| hypothetical protein SARI_04336 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|161365658|gb|ABX69426.1| hypothetical protein SPAB_04100 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|197095627|emb|CAR61195.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|206710341|emb|CAR34699.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224469614|gb|ACN47444.1| hypothetical protein SPC_3359 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261248454|emb|CBG26291.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|301159838|emb|CBW19357.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914314|dbj|BAJ38288.1| hypothetical protein STMDT12_C33450 [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225972|gb|EFX51026.1| clustered with transcription termination protein NusA [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|332990146|gb|AEF09129.1| hypothetical protein STMUK_3272 [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 140 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 63/108 (58%), Gaps = 1/108 (0%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I +E + + V I + + L+I+++ +DG + + DC ++S +S +LDVE+ I Sbjct: 1 MITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVEDPIS 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 Y LEVSSPG+DRPM + R+ G VA + ++ +++K G I Sbjct: 60 VAYNLEVSSPGLDRPMFTADHYARFQGEEVALVLRMAVQNRRKWQGII 107 >gi|256028608|ref|ZP_05442442.1| putative cytoplasmic protein [Fusobacterium sp. D11] gi|289766526|ref|ZP_06525904.1| conserved hypothetical protein [Fusobacterium sp. D11] gi|289718081|gb|EFD82093.1| conserved hypothetical protein [Fusobacterium sp. D11] Length = 156 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 82/148 (55%), Gaps = 6/148 (4%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQA 75 G+ + I+ ++ P +EEM+ V + +++ ++IF+E +G++++ DC +LS Sbjct: 3 GNNQIVEKITEIVNPFVEEMNLSLVDVEYVQDGAYWYIRIFIENLNGDLSIEDCSKLSSK 62 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ--KLIG 133 I +E +IE + LEVSSPG++RP+ + D++R+ G + + DK+ K I Sbjct: 63 IED--KIEKLIEHKFFLEVSSPGLERPLKKIEDYIRFTGEKITLHLKHKLDDKKQFKAII 120 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIA 161 K + + F ++K K E NE++ A Sbjct: 121 KEVNGNNIIFLIDK-KEIEIKFNEIRKA 147 >gi|290511547|ref|ZP_06550916.1| hypothetical protein HMPREF0485_03317 [Klebsiella sp. 1_1_55] gi|289776540|gb|EFD84539.1| hypothetical protein HMPREF0485_03317 [Klebsiella sp. 1_1_55] Length = 154 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 65/111 (58%), Gaps = 1/111 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ ++ +E + F V I + + L+I+++ +DG + + DC ++S +S ++DVE+ Sbjct: 12 LTEMLTAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVMDVED 70 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I Y LEVSSPG+DRPM + R+ G VA + ++ +++K G I Sbjct: 71 PITVAYNLEVSSPGLDRPMFTAEHYQRFTGEEVALVLRMAVQNRRKWQGII 121 >gi|282848826|ref|ZP_06258219.1| conserved hypothetical protein [Veillonella parvula ATCC 17745] gi|294791738|ref|ZP_06756886.1| conserved hypothetical protein [Veillonella sp. 6_1_27] gi|294793599|ref|ZP_06758736.1| conserved hypothetical protein [Veillonella sp. 3_1_44] gi|282581480|gb|EFB86870.1| conserved hypothetical protein [Veillonella parvula ATCC 17745] gi|294455169|gb|EFG23541.1| conserved hypothetical protein [Veillonella sp. 3_1_44] gi|294456968|gb|EFG25330.1| conserved hypothetical protein [Veillonella sp. 6_1_27] Length = 152 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 69/117 (58%), Gaps = 1/117 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 +SSV++ +I V + + E++ L++++++ G + L DC+ +S+ +S +LD ++ Sbjct: 10 VSSVVEGIIAGTDMELVDVDYVRERDWYLRVYLDKP-GGVDLDDCQLVSEKLSAVLDEKD 68 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 I +Y LEVSSPG+DR + + D +R+NG V ++ ++ G + G ++T Sbjct: 69 PITENYLLEVSSPGLDRVLKKDKDLVRYNGRDVDIQLFKPVNGSKQFTGALQGFTDT 125 >gi|228916454|ref|ZP_04080020.1| hypothetical protein bthur0012_36690 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228928865|ref|ZP_04091897.1| hypothetical protein bthur0010_35570 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935131|ref|ZP_04097958.1| hypothetical protein bthur0009_35840 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947536|ref|ZP_04109826.1| hypothetical protein bthur0007_36640 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228986960|ref|ZP_04147086.1| hypothetical protein bthur0001_36350 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229092857|ref|ZP_04223991.1| hypothetical protein bcere0021_36040 [Bacillus cereus Rock3-42] gi|229123330|ref|ZP_04252534.1| hypothetical protein bcere0016_36190 [Bacillus cereus 95/8201] gi|229140458|ref|ZP_04269013.1| hypothetical protein bcere0013_35570 [Bacillus cereus BDRD-ST26] gi|229157393|ref|ZP_04285471.1| hypothetical protein bcere0010_35760 [Bacillus cereus ATCC 4342] gi|229186054|ref|ZP_04313224.1| hypothetical protein bcere0004_36010 [Bacillus cereus BGSC 6E1] gi|229197927|ref|ZP_04324643.1| hypothetical protein bcere0001_34630 [Bacillus cereus m1293] gi|228585645|gb|EEK43747.1| hypothetical protein bcere0001_34630 [Bacillus cereus m1293] gi|228597473|gb|EEK55123.1| hypothetical protein bcere0004_36010 [Bacillus cereus BGSC 6E1] gi|228626120|gb|EEK82869.1| hypothetical protein bcere0010_35760 [Bacillus cereus ATCC 4342] gi|228643019|gb|EEK99295.1| hypothetical protein bcere0013_35570 [Bacillus cereus BDRD-ST26] gi|228660106|gb|EEL15742.1| hypothetical protein bcere0016_36190 [Bacillus cereus 95/8201] gi|228690479|gb|EEL44262.1| hypothetical protein bcere0021_36040 [Bacillus cereus Rock3-42] gi|228772738|gb|EEM21178.1| hypothetical protein bthur0001_36350 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228812056|gb|EEM58387.1| hypothetical protein bthur0007_36640 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824496|gb|EEM70301.1| hypothetical protein bthur0009_35840 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830672|gb|EEM76277.1| hypothetical protein bthur0010_35570 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843033|gb|EEM88115.1| hypothetical protein bthur0012_36690 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 164 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 89/166 (53%), Gaps = 12/166 (7%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEEL 72 R+F D + + + QP++EE++ V + ++E ++ L++F++ + G + + +C + Sbjct: 6 RLFMDKKVTEVVEAFAQPIVEELNLELVDVEYVKEGQDWFLRVFIDSEKG-VDIEECGAV 64 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+ +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ Sbjct: 65 SERLSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMFE 124 Query: 133 GKIM---GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 GK++ GT+ T K ++ E I I D + +ARL VT Sbjct: 125 GKMLSYDGTTITLLLTIKTRKKE-------IQIPMDKVANARLAVT 163 >gi|319941975|ref|ZP_08016296.1| ribosome maturation factor rimP [Sutterella wadsworthensis 3_1_45B] gi|319804628|gb|EFW01498.1| ribosome maturation factor rimP [Sutterella wadsworthensis 3_1_45B] Length = 186 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 73/128 (57%), Gaps = 10/128 (7%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 M +G +S++++ +E + + V + L+ + + I +ERD G ++L DCE +S ++ Sbjct: 1 MNSSGALSALVKKTVEGLGYELVDVERLQRGLVRVTIDIERD-GGISLEDCERVSDQLTH 59 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV-------LSSGDKQKL 131 + VE++ + RLEVSSPG++RP+ R D+ R+ G + E+ ++KL Sbjct: 60 LFTVEDV--SYERLEVSSPGVERPLKRARDWERFTGELAWVELFAPLKAEGFPEAGRRKL 117 Query: 132 IGKIMGTS 139 G+I+G S Sbjct: 118 EGRIVGIS 125 >gi|240128558|ref|ZP_04741219.1| hypothetical protein NgonS_08003 [Neisseria gonorrhoeae SK-93-1035] gi|317164605|gb|ADV08146.1| hypothetical protein NGTW08_1178 [Neisseria gonorrhoeae TCDC-NG08107] Length = 143 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 67/114 (58%), Gaps = 5/114 (4%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++++ + + + V L + L ++F++++ G +T+ DC +S +S + VE Sbjct: 2 DIQTILEKTLPGLGYELVDFELTAQGTL--RVFIDKE-GGITVEDCATVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +I G+ LE+SSPG+DRP+ + +DF+R+ G + L G ++ IGKI G Sbjct: 59 DI--GYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIGGQKNFIGKIEG 110 >gi|118479037|ref|YP_896188.1| hypothetical protein BALH_3445 [Bacillus thuringiensis str. Al Hakam] gi|118418262|gb|ABK86681.1| conserved hypothetical protein [Bacillus thuringiensis str. Al Hakam] Length = 174 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 89/166 (53%), Gaps = 12/166 (7%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEEL 72 R+F D + + + QP++EE++ V + ++E ++ L++F++ + G + + +C + Sbjct: 16 RLFMDKKVTEVVEAFAQPIVEELNLELVDVEYVKEGQDWFLRVFIDSEKG-VDIEECGAV 74 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+ +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ Sbjct: 75 SERLSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMFE 134 Query: 133 GKIM---GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 GK++ GT+ T K ++ E I I D + +ARL VT Sbjct: 135 GKMLSYDGTTITLLLTIKTRKKE-------IQIPMDKVANARLAVT 173 >gi|206577891|ref|YP_002236419.1| hypothetical protein KPK_0544 [Klebsiella pneumoniae 342] gi|229269511|ref|YP_001337240.2| hypothetical protein KPN_03578 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|259585803|sp|B5XSX2|RIMP_KLEP3 RecName: Full=Ribosome maturation factor rimP gi|259585806|sp|A6TEI9|RIMP_KLEP7 RecName: Full=Ribosome maturation factor rimP gi|206566949|gb|ACI08725.1| conserved hypothetical protein [Klebsiella pneumoniae 342] Length = 150 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 65/111 (58%), Gaps = 1/111 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ ++ +E + F V I + + L+I+++ +DG + + DC ++S +S ++DVE+ Sbjct: 8 LTEMLTAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVMDVED 66 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I Y LEVSSPG+DRPM + R+ G VA + ++ +++K G I Sbjct: 67 PITVAYNLEVSSPGLDRPMFTAEHYQRFTGEEVALVLRMAVQNRRKWQGII 117 >gi|75760861|ref|ZP_00740875.1| Hypothetical cytosolic protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491645|gb|EAO54847.1| Hypothetical cytosolic protein [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 174 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 89/166 (53%), Gaps = 12/166 (7%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEEL 72 R+F D + + + QP++EE++ V + ++E ++ L++F++ + G + + +C + Sbjct: 16 RLFMDKKVTEVVEAFAQPIVEELNLELVDVEYVKEGQDWFLRVFIDSEKG-VDIEECGAV 74 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+ +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ Sbjct: 75 SERLSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMFE 134 Query: 133 GKIM---GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 GK++ GT+ T K ++ E I I D + +ARL VT Sbjct: 135 GKLLSYDGTTITLLLTIKTRKKE-------IQIPMDKVANARLAVT 173 >gi|239999348|ref|ZP_04719272.1| hypothetical protein Ngon3_07677 [Neisseria gonorrhoeae 35/02] gi|240014532|ref|ZP_04721445.1| hypothetical protein NgonD_07784 [Neisseria gonorrhoeae DGI18] gi|240016978|ref|ZP_04723518.1| hypothetical protein NgonFA_07392 [Neisseria gonorrhoeae FA6140] gi|240081420|ref|ZP_04725963.1| hypothetical protein NgonF_08941 [Neisseria gonorrhoeae FA19] gi|240113615|ref|ZP_04728105.1| hypothetical protein NgonM_08610 [Neisseria gonorrhoeae MS11] gi|240118337|ref|ZP_04732399.1| hypothetical protein NgonPID_07718 [Neisseria gonorrhoeae PID1] gi|240121054|ref|ZP_04734016.1| hypothetical protein NgonPI_04654 [Neisseria gonorrhoeae PID24-1] gi|240123885|ref|ZP_04736841.1| hypothetical protein NgonP_08079 [Neisseria gonorrhoeae PID332] gi|240126084|ref|ZP_04738970.1| hypothetical protein NgonSK_07689 [Neisseria gonorrhoeae SK-92-679] Length = 143 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 67/114 (58%), Gaps = 5/114 (4%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++++ + + + V L + L ++F++++ G +T+ DC +S +S + VE Sbjct: 2 DIQTILEKTLPGLGYELVDFELAAQGTL--RVFIDKE-GGITVEDCATVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +I G+ LE+SSPG+DRP+ + +DF+R+ G + L G ++ IGKI G Sbjct: 59 DI--GYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIGGQKNFIGKIEG 110 >gi|78222793|ref|YP_384540.1| hypothetical protein Gmet_1583 [Geobacter metallireducens GS-15] gi|91208011|sp|Q39VA9|RIMP_GEOMG RecName: Full=Ribosome maturation factor rimP gi|78194048|gb|ABB31815.1| protein of unknown function DUF150 [Geobacter metallireducens GS-15] Length = 159 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 53/71 (74%), Gaps = 1/71 (1%) Query: 47 EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRK 106 E ++++L++FV++ G +TL DC +S+ S ILDVE+ I +Y LEVSSPG++RP+ R+ Sbjct: 33 EGRHMVLRLFVDKA-GGITLDDCALVSREFSEILDVEDFISENYTLEVSSPGLNRPLKRE 91 Query: 107 SDFLRWNGHVV 117 SD+ R+ G +V Sbjct: 92 SDYERYRGRLV 102 >gi|161501882|ref|YP_048824.2| hypothetical protein ECA0710 [Pectobacterium atrosepticum SCRI1043] Length = 150 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 67/111 (60%), Gaps = 1/111 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I + + + V I + + L+I+++ +DG +T+ DC ++S +S +LDVE+ Sbjct: 8 LTEMISAPVAALGYELVGIEFIRSRQSTLRIYIDSEDG-ITVDDCADVSHQVSAVLDVED 66 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I Y LEVSSPG++RP+ + +L + G VA + ++ +++K +G I Sbjct: 67 PITVAYNLEVSSPGLERPLFTAAHYLHFVGEEVAVVLRMAVQNRRKWLGVI 117 >gi|91208369|sp|Q6D9A7|RIMP_ERWCT RecName: Full=Ribosome maturation factor rimP Length = 152 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 67/111 (60%), Gaps = 1/111 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I + + + V I + + L+I+++ +DG +T+ DC ++S +S +LDVE+ Sbjct: 10 LTEMISAPVAALGYELVGIEFIRSRQSTLRIYIDSEDG-ITVDDCADVSHQVSAVLDVED 68 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I Y LEVSSPG++RP+ + +L + G VA + ++ +++K +G I Sbjct: 69 PITVAYNLEVSSPGLERPLFTAAHYLHFVGEEVAVVLRMAVQNRRKWLGVI 119 >gi|312134895|ref|YP_004002233.1| hypothetical protein Calow_0865 [Caldicellulosiruptor owensensis OL] gi|311774946|gb|ADQ04433.1| protein of unknown function DUF150 [Caldicellulosiruptor owensensis OL] Length = 151 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 89/152 (58%), Gaps = 12/152 (7%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + +++P++E F V I +E K+ L++++++ G +T+ DC+ +S+ +S Sbjct: 4 ITKKVEELVKPILERYGFDLVDIEFKKEGKSHFLRVYIDKP-GGITIDDCQLVSEELSER 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG--DKQKLIGKIMG 137 LD+ + I Y LEVSSPG+DRP+V DF+R G +V E+ LS ++ K G+++ Sbjct: 63 LDIVDPIPFSYYLEVSSPGVDRPLVTDRDFIRNKGRLV--EVFLSQPFLNRTKFTGELVE 120 Query: 138 TSETGFFL--EKEKRG---EKDMNELQIAISF 164 ++ L +KEK EK + +++IAI F Sbjct: 121 KNDKFLVLIMDKEKIDIPIEK-VKKVKIAIRF 151 >gi|329997773|ref|ZP_08302912.1| hypothetical protein HMPREF9538_00552 [Klebsiella sp. MS 92-3] gi|150956943|gb|ABR78973.1| hypothetical protein KPN_03578 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|328538907|gb|EGF64968.1| hypothetical protein HMPREF9538_00552 [Klebsiella sp. MS 92-3] Length = 140 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 61/103 (59%), Gaps = 1/103 (0%) Query: 33 IEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRL 92 +E + F V I + + L+I+++ +DG + + DC ++S +S ++DVE+ I Y L Sbjct: 6 VEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVMDVEDPITVAYNL 64 Query: 93 EVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 EVSSPG+DRPM + R+ G VA + ++ +++K G I Sbjct: 65 EVSSPGLDRPMFTAEHYQRFTGEEVALVLRMAVQNRRKWQGII 107 >gi|307243344|ref|ZP_07525508.1| conserved hypothetical protein [Peptostreptococcus stomatis DSM 17678] gi|306493291|gb|EFM65280.1| conserved hypothetical protein [Peptostreptococcus stomatis DSM 17678] Length = 155 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 86/152 (56%), Gaps = 9/152 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQAISPI 79 +A + IQP +E + V + ++E + L++ ++ ++G + L +CE++S+ I+PI Sbjct: 5 IAQRVEEKIQPSVEGFGYELVDVEYVKEAGVYYLRVIIDHENG-IGLDECEKVSREINPI 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD--KQKLIGKIMG 137 LD E+ IE +Y LEV SPGIDR + R +F ++ G V ++ + D ++ ++ G Sbjct: 64 LDEEDYIEDNYFLEVCSPGIDRVLKRDKEFSKYAGKTVEVKLYKNDQDLKTKQFEAELRG 123 Query: 138 TSETGFFL-----EKEKRGEKDMNELQIAISF 164 + G + ++K K++ ++++A+ F Sbjct: 124 LDQDGMVVVSIGDTEKKFDRKEIAQIRLAVVF 155 >gi|157964684|ref|YP_001499508.1| hypothetical protein RMA_0855 [Rickettsia massiliae MTU5] gi|157844460|gb|ABV84961.1| hypothetical protein RMA_0855 [Rickettsia massiliae MTU5] Length = 164 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 89/160 (55%), Gaps = 9/160 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDG-NMTLRDCEELSQAISPILDVE 83 I++VI+ + +M F V + + +++I ++ +G +++ DC + S+ IS ILDVE Sbjct: 11 ITNVIEESLTDMGFELVLVKVKGVNPKVVEILIDSLNGERISVEDCTKASRTISAILDVE 70 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 ++IE Y LEV+S G++RP+V+ ++ R+ V ++ K + GKI+ Sbjct: 71 DLIEAAYSLEVASSGLERPLVKFENYNRFLEREVKIKLKELLNGKTRYQGKIIKAENNKI 130 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 +L+ E E ++ I +D + +A L++T+E+ + L Sbjct: 131 YLKCE--------EQEVLIDYDLIKNANLVLTEEVFKKLL 162 >gi|126657164|ref|ZP_01728330.1| hypothetical protein CY0110_24586 [Cyanothece sp. CCY0110] gi|126621435|gb|EAZ92146.1| hypothetical protein CY0110_24586 [Cyanothece sp. CCY0110] Length = 151 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 69/132 (52%), Gaps = 1/132 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 L I + P+++EM V++ K +L++ + D + +L DCE++S+A+ + Sbjct: 5 LIPQIIDLATPIVQEMGLDVVEVVFQTNKRPPVLRVDIRNPDSDTSLNDCEQVSRALEAV 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD I+ G Y LE+SSPGI R + + DF+ + G V DK++ G++ G Sbjct: 65 LDETAIMPGAYVLEISSPGISRYLSDERDFVAFKGFEVNVTTNPPYKDKKEWQGRLQGRD 124 Query: 140 ETGFFLEKEKRG 151 + +L ++ R Sbjct: 125 DKAVYLNRKGRA 136 >gi|237743253|ref|ZP_04573734.1| conserved hypothetical protein [Fusobacterium sp. 7_1] gi|229433032|gb|EEO43244.1| conserved hypothetical protein [Fusobacterium sp. 7_1] Length = 156 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 78/147 (53%), Gaps = 4/147 (2%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQA 75 G+ + I+ ++ P +EEM+ V + +++ ++IF+E +G++++ DC +LS Sbjct: 3 GNNQIVEKITEIVNPFVEEMNLSLVDVEYVQDGAYWYIRIFIENLNGDLSIEDCSKLSSK 62 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I +E +IE + LEVSSPG++RP+ + D++R+ G + + DK++ I Sbjct: 63 IED--KIEKLIEHKFFLEVSSPGLERPLKKIEDYIRFTGEKITLHLKHKLDDKKQFKAII 120 Query: 136 MGTSETG-FFLEKEKRGEKDMNELQIA 161 + FL K E NE++ A Sbjct: 121 KEVNGNNIIFLIDNKEIEIKFNEIRKA 147 >gi|190575264|ref|YP_001973109.1| hypothetical protein Smlt3391 [Stenotrophomonas maltophilia K279a] gi|226703805|sp|B2FN92|RIMP_STRMK RecName: Full=Ribosome maturation factor rimP gi|190013186|emb|CAQ46819.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a] Length = 196 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 82/162 (50%), Gaps = 20/162 (12%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFV-----ERDDGNMTLRDCEELSQA 75 A DI++++ P + + + + L L++++ E+ + + + DCE +S+ Sbjct: 5 ATDIANLLAPTVVSLGLELLGVEYLPAPGGATLRLYIDVPLAEQPERIINVDDCERVSRE 64 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LDVE+ I G+Y LEVSSPG+DRP+ F R G + L ++++L G+I Sbjct: 65 VSAQLDVEDPISGNYTLEVSSPGVDRPLFNLEQFARHQGESAKVTLKLPQDNRRRLQGRI 124 Query: 136 MGTSETG----FFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 T E F ++K ++ +S D++ AR++ Sbjct: 125 EATDEAAGTITFIVDK----------TEVVVSADNIDKARIM 156 >gi|56419794|ref|YP_147112.1| hypothetical protein GK1259 [Geobacillus kaustophilus HTA426] gi|81347603|sp|Q5L0J2|RIMP_GEOKA RecName: Full=Ribosome maturation factor rimP gi|56379636|dbj|BAD75544.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 157 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 80/151 (52%), Gaps = 6/151 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ P+++EM V I ++E KN L++F++ DDG + + C +S+ +S LD Sbjct: 9 VEQLVTPILDEMGLELVDIEYVKEGKNWFLRVFIDSDDG-VDIEQCGAVSEKLSEKLDEV 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I +Y LEVSSPG +RP+ + DF + G V + +++ G++ T Sbjct: 68 DPIPHNYFLEVSSPGAERPLKKAKDFAKAIGKNVYIKTYEPIEGEKQFEGELTAFDGTTV 127 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L + RG + +AI ++ + SARL V Sbjct: 128 TLLVKDRGRQKT----VAIPYEKVASARLAV 154 >gi|261419459|ref|YP_003253141.1| hypothetical protein GYMC61_2043 [Geobacillus sp. Y412MC61] gi|319766274|ref|YP_004131775.1| hypothetical protein GYMC52_1166 [Geobacillus sp. Y412MC52] gi|261375916|gb|ACX78659.1| protein of unknown function DUF150 [Geobacillus sp. Y412MC61] gi|317111140|gb|ADU93632.1| protein of unknown function DUF150 [Geobacillus sp. Y412MC52] Length = 157 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 80/151 (52%), Gaps = 6/151 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ P+++EM V I ++E KN L++F++ DDG + + C +S+ +S LD Sbjct: 9 VEQLVTPILDEMGLELVDIEYVKEGKNWFLRVFIDSDDG-VDIEQCGAVSEKLSEKLDEV 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I +Y LEVSSPG +RP+ + DF + G V + +++ G++ T Sbjct: 68 DPIPYNYFLEVSSPGAERPLKKAKDFAKAIGKNVYIKTYEPIEGEKQFEGELTAFDGTTV 127 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L + RG + +AI ++ + SARL V Sbjct: 128 TLLVKDRGRQKT----VAIPYEKVASARLAV 154 >gi|259586220|sp|A8F225|RIMP_RICM5 RecName: Full=Ribosome maturation factor rimP Length = 161 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 89/160 (55%), Gaps = 9/160 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDG-NMTLRDCEELSQAISPILDVE 83 I++VI+ + +M F V + + +++I ++ +G +++ DC + S+ IS ILDVE Sbjct: 8 ITNVIEESLTDMGFELVLVKVKGVNPKVVEILIDSLNGERISVEDCTKASRTISAILDVE 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 ++IE Y LEV+S G++RP+V+ ++ R+ V ++ K + GKI+ Sbjct: 68 DLIEAAYSLEVASSGLERPLVKFENYNRFLEREVKIKLKELLNGKTRYQGKIIKAENNKI 127 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 +L+ E E ++ I +D + +A L++T+E+ + L Sbjct: 128 YLKCE--------EQEVLIDYDLIKNANLVLTEEVFKKLL 159 >gi|332306995|ref|YP_004434846.1| hypothetical protein Glaag_2637 [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174324|gb|AEE23578.1| protein of unknown function DUF150 [Glaciecola agarilytica 4H-3-7+YE-5] Length = 152 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 69/121 (57%), Gaps = 2/121 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ ++ +E + F V I + K+ ++++++ DG +T+ C E+S +S + Sbjct: 4 LEQKLTEMLTAPVEALGFEMVGIEFVRAGKHSTMRVYIDHPDG-ITVDHCAEVSHQVSAV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG++RP+ + ++ G VV + + GD++ GK++ + Sbjct: 63 LDVEDPINTEYNLEVSSPGMERPLFKLQHYIDSVGEVVTLRLKMPMGDRRNFKGKLLSEA 122 Query: 140 E 140 + Sbjct: 123 D 123 >gi|255524232|ref|ZP_05391191.1| protein of unknown function DUF150 [Clostridium carboxidivorans P7] gi|255512057|gb|EET88338.1| protein of unknown function DUF150 [Clostridium carboxidivorans P7] Length = 154 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 77/118 (65%), Gaps = 1/118 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L +++++++P++ E+++ + L+ E K+ L+I++++++ ++L+DCE++S+A+S + Sbjct: 6 LIDELTNLVKPIVTELNYDLYYLELVREGKDNYLRIYIDKENEGISLQDCEKVSRAVSEM 65 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LDV++ I+ Y LEVSSPGI+R + ++ G+ V I K+K G+++ Sbjct: 66 LDVKDPIKEGYYLEVSSPGIERILHTDEHLQKYTGNDVVVNISGLLNGKKKYEGQLVN 123 >gi|260495124|ref|ZP_05815253.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33] gi|260197567|gb|EEW95085.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33] Length = 156 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 79/145 (54%), Gaps = 4/145 (2%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQA 75 G+ + I+ ++ P +EEM+ V + +++ ++IF+E +G++++ DC +LS Sbjct: 3 GNNQIVEKITEIVNPFVEEMNLSLVDVEYVQDGAYWYIRIFIENLNGDLSIEDCSKLSSK 62 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I +E +IE + LEVSSPG++RP+ + D++R+ G + + DK++ I Sbjct: 63 IED--KIEKLIEHKFFLEVSSPGLERPLKKIEDYIRFTGEKITLHLKHKLDDKKQFKAII 120 Query: 136 MGTS-ETGFFLEKEKRGEKDMNELQ 159 + + FL +K E NE++ Sbjct: 121 KEVNGDNIIFLIDKKEIEIKFNEIR 145 >gi|188532502|ref|YP_001906299.1| YhbC-like protein [Erwinia tasmaniensis Et1/99] gi|188027544|emb|CAO95391.1| YhbC-like protein [Erwinia tasmaniensis Et1/99] Length = 192 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 65/111 (58%), Gaps = 1/111 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I +E + + V I + + L+I+++ +DG + + DC ++S +S ++DVE+ Sbjct: 50 LTELISAPVEALGYELVGIEFVRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVMDVED 108 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I Y LEVSSPG+DRPM + R+ G V+ + ++ +++K G I Sbjct: 109 PITVAYNLEVSSPGLDRPMFTAEHYARFTGEEVSLVLRMAVQNRRKWQGII 159 >gi|297530566|ref|YP_003671841.1| hypothetical protein GC56T3_2294 [Geobacillus sp. C56-T3] gi|297253818|gb|ADI27264.1| protein of unknown function DUF150 [Geobacillus sp. C56-T3] Length = 157 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 80/151 (52%), Gaps = 6/151 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ P+++EM V I ++E KN L++F++ DDG + + C +S+ +S LD Sbjct: 9 VEQLVTPILDEMGLELVDIEYVKEGKNWFLRVFIDSDDG-VDIEQCGAVSEKLSEKLDEV 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I +Y LEVSSPG +RP+ + DF + G V + +++ G++ T Sbjct: 68 DPIPYNYFLEVSSPGAERPLKKAKDFAKAIGKNVYIKTYEPIEGERQFEGELTAFDGTTV 127 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L + RG + +AI ++ + SARL V Sbjct: 128 TLLVKDRGRQKT----VAIPYEKVASARLAV 154 >gi|296185353|ref|ZP_06853763.1| hypothetical protein CLCAR_0776 [Clostridium carboxidivorans P7] gi|296050187|gb|EFG89611.1| hypothetical protein CLCAR_0776 [Clostridium carboxidivorans P7] Length = 155 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 77/118 (65%), Gaps = 1/118 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L +++++++P++ E+++ + L+ E K+ L+I++++++ ++L+DCE++S+A+S + Sbjct: 7 LIDELTNLVKPIVTELNYDLYYLELVREGKDNYLRIYIDKENEGISLQDCEKVSRAVSEM 66 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LDV++ I+ Y LEVSSPGI+R + ++ G+ V I K+K G+++ Sbjct: 67 LDVKDPIKEGYYLEVSSPGIERILHTDEHLQKYTGNDVVVNISGLLNGKKKYEGQLVN 124 >gi|268601717|ref|ZP_06135884.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|291043425|ref|ZP_06569146.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|268585848|gb|EEZ50524.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|291012661|gb|EFE04646.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] Length = 149 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 69/119 (57%), Gaps = 5/119 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 +G + DI ++++ + + + L + L ++F++++ G +T+ DC +S +S Sbjct: 3 IGSSMDIQTILEKTLPGLGYELADFELAAQGTL--RVFIDKE-GGITVEDCATVSNHLSR 59 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 + VE+I G+ LE+SSPG+DRP+ + +DF+R+ G + L G ++ IGKI G Sbjct: 60 VFMVEDI--GYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIGGQKNFIGKIEG 116 >gi|237736657|ref|ZP_04567138.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817] gi|229420519|gb|EEO35566.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817] Length = 160 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I ++ PV+ EM V I +++ ++I+VE +G +TL +C +S I DV+ Sbjct: 14 IEKIVTPVVNEMGLSLVDIEYMQDGGYWYVRIYVENLNGEITLEECAAISGKIDE--DVD 71 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +IE + LEVSSPGI+RP+ + DF+R+ G + + DK+ G I + Sbjct: 72 KLIEQRFFLEVSSPGIERPLKKIEDFIRFKGEKIKVSLKHKINDKKSFEGIITECKDNII 131 Query: 144 FL 145 FL Sbjct: 132 FL 133 >gi|89895267|ref|YP_518754.1| hypothetical protein DSY2521 [Desulfitobacterium hafniense Y51] gi|122482374|sp|Q24UI2|RIMP_DESHY RecName: Full=Ribosome maturation factor rimP gi|89334715|dbj|BAE84310.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 152 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 69/126 (54%), Gaps = 2/126 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++I PVI E V + ++E + L+I+++++ G + + DC +S +S +LD Sbjct: 9 VEAIIAPVITEQGLELVDVEYVKEGAHWYLRIYIDKE-GGVDIDDCTNVSHLVSEVLDKH 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I Y LEVSSPG++RP+ + DF R+ G +V + ++ G ++G E Sbjct: 68 DPIAQAYMLEVSSPGLERPLKKDEDFERFTGKLVRVLTKEAYQGYKEFTGYLVGLIEDDI 127 Query: 144 FLEKEK 149 LE EK Sbjct: 128 VLEYEK 133 >gi|282861438|ref|ZP_06270503.1| protein of unknown function DUF150 [Streptomyces sp. ACTE] gi|282564096|gb|EFB69633.1| protein of unknown function DUF150 [Streptomyces sp. ACTE] Length = 165 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 80/151 (52%), Gaps = 11/151 (7%) Query: 25 ISSVIQPVI--EEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 + +++P++ +E+ +++S + +L ++ V+ DDG + L C ELS+ IS LD Sbjct: 9 LRGLLEPLVSAKELDLEEIEVSRAGRRRVL-RVIVDSDDG-VELDTCAELSRTISETLDA 66 Query: 83 ENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + + EG Y LEVSSPG DRP+ ++R G + L+ D +L+ +I+G + Sbjct: 67 TDAMGEGEYVLEVSSPGADRPLTEHRHYVRATGRLAK----LNLADGGELVARILGVDDE 122 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G LE G K ++FD + AR+ Sbjct: 123 GLDLEVP--GVKGRKPTARRVAFDEIAKARV 151 >gi|188996514|ref|YP_001930765.1| protein of unknown function DUF150 [Sulfurihydrogenibium sp. YO3AOP1] gi|259645122|sp|B2V8D8|RIMP_SULSY RecName: Full=Ribosome maturation factor rimP gi|188931581|gb|ACD66211.1| protein of unknown function DUF150 [Sulfurihydrogenibium sp. YO3AOP1] Length = 147 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 82/154 (53%), Gaps = 9/154 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 M + + ++ P++EE F+ V I + K +L+I++ +G ++ DCE +S+ I Sbjct: 1 MKVEEKVKELLLPILEERDFKLVDIEFIPSKRPILRIYIYNPEGT-SIDDCEWVSKRIGA 59 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LDVE++I+ Y LEVSSPG+DR ++ + G V + +K+ G ++G Sbjct: 60 LLDVEDLIDKAYILEVSSPGLDRKFKNIEEYDIFKGRDVVVKTKEPINEKKVFKGTLLG- 118 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 LE EK K+ NE + I F+++ +L Sbjct: 119 ------LEDEKVKIKE-NEETVEIPFENVSQTKL 145 >gi|327441014|dbj|BAK17379.1| uncharacterized protein [Solibacillus silvestris StLB046] Length = 161 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 82/151 (54%), Gaps = 5/151 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I ++ P++EE+ V I ++E ++ L+I+V+ +G + + C ++S+ +S LD Sbjct: 8 IEELVTPIVEELDLELVDIEFVKEGRDWFLRIYVDTPEGGIDILQCAQVSERLSEKLDEN 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + IE +Y LEVSSPG +RP+ ++ DF + G + + D ++ G + ++ Sbjct: 68 DPIEQNYYLEVSSPGAERPLKKQQDFEKAIGKYIYVKTYEPVKDLKEFYGYLRAYTDE-- 125 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 FLE E R + ++ + I + + ARL + Sbjct: 126 FLEMEFRIK--TRKVTVQIEKEKIAQARLAI 154 >gi|229061420|ref|ZP_04198765.1| hypothetical protein bcere0026_35060 [Bacillus cereus AH603] gi|229134624|ref|ZP_04263434.1| hypothetical protein bcere0014_35330 [Bacillus cereus BDRD-ST196] gi|228648885|gb|EEL04910.1| hypothetical protein bcere0014_35330 [Bacillus cereus BDRD-ST196] gi|228717843|gb|EEL69491.1| hypothetical protein bcere0026_35060 [Bacillus cereus AH603] Length = 164 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 88/166 (53%), Gaps = 12/166 (7%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEEL 72 R+F D + + + QP++EE++ V + ++E ++ L++F++ + G + + +C + Sbjct: 6 RLFMDKKVTEIVEAFAQPIVEELNLELVDVEYVQEGQDWFLRVFIDSEKG-VEIEECGAV 64 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+ +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ Sbjct: 65 SERLSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYKPIDGEKMFE 124 Query: 133 GKIM---GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 GK++ G + T K ++ E I I D + +ARL VT Sbjct: 125 GKLLSYDGNTITLLLTIKTRKKE-------IQIPMDKVANARLAVT 163 >gi|172036757|ref|YP_001803258.1| hypothetical protein cce_1842 [Cyanothece sp. ATCC 51142] gi|259585745|sp|B1WZP0|RIMP_CYAA5 RecName: Full=Ribosome maturation factor rimP gi|171698211|gb|ACB51192.1| DUF150-containing protein [Cyanothece sp. ATCC 51142] Length = 151 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 68/132 (51%), Gaps = 1/132 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 L I + P++EEM V++ K +L++ + + +L DCE++S+A+ + Sbjct: 5 LIPQIIDLATPIVEEMGLDVVEVVFQTNKRPPVLRVDIRNPASDTSLNDCEQVSRALEAV 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD I+ G Y LE+SSPGI R + + DF+ + G V DK++ G++ G Sbjct: 65 LDETAIMPGAYVLEISSPGISRYLNSERDFIAFKGFEVNIATNPPYKDKKEWRGRLQGRD 124 Query: 140 ETGFFLEKEKRG 151 E +L ++ R Sbjct: 125 EKAVYLNRKGRA 136 >gi|121535259|ref|ZP_01667073.1| protein of unknown function DUF150 [Thermosinus carboxydivorans Nor1] gi|121306144|gb|EAX47072.1| protein of unknown function DUF150 [Thermosinus carboxydivorans Nor1] Length = 152 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 76/148 (51%), Gaps = 9/148 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + ++Q +I + + V + ++E+N L++F+++ G + + DC+ +S+ + LD + Sbjct: 10 VERLVQDIITDTNMELVDVEYVKERNWYLRVFLDKP-GGIEVEDCQWVSEQLEVKLDELD 68 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I+ Y LEVSSPG+DRP+ + DF+R G V + ++G + G SET Sbjct: 69 PIKESYYLEVSSPGLDRPLKKDRDFIRHIGEKVEVHTFAPLNGSKLVVGTLTGISETDIH 128 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARL 172 L D+N +++ D +L Sbjct: 129 L--------DVNGTALSVPRDKTAQVKL 148 >gi|301063518|ref|ZP_07204050.1| conserved hypothetical protein [delta proteobacterium NaphS2] gi|300442457|gb|EFK06690.1| conserved hypothetical protein [delta proteobacterium NaphS2] Length = 157 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 36/101 (35%), Positives = 64/101 (63%), Gaps = 2/101 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L +I ++++PV++EM V + + + +L+I+ +R G +TL DC +S+ I + Sbjct: 5 LLKEIEALVEPVLDEMGIELVDLEYVSGQGRQVLRIYADRPTG-ITLDDCAMVSREIGHL 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 LDV ++++ Y LEVSSPG++RP+ R+ DFLR G + + Sbjct: 64 LDVSDLLKHQYVLEVSSPGLNRPLKREKDFLRVVGQRIKVQ 104 >gi|228992545|ref|ZP_04152472.1| hypothetical protein bpmyx0001_32850 [Bacillus pseudomycoides DSM 12442] gi|228998593|ref|ZP_04158180.1| hypothetical protein bmyco0003_31540 [Bacillus mycoides Rock3-17] gi|229006093|ref|ZP_04163781.1| hypothetical protein bmyco0002_30140 [Bacillus mycoides Rock1-4] gi|228755169|gb|EEM04526.1| hypothetical protein bmyco0002_30140 [Bacillus mycoides Rock1-4] gi|228761061|gb|EEM10020.1| hypothetical protein bmyco0003_31540 [Bacillus mycoides Rock3-17] gi|228767179|gb|EEM15815.1| hypothetical protein bpmyx0001_32850 [Bacillus pseudomycoides DSM 12442] Length = 164 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 90/168 (53%), Gaps = 12/168 (7%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCE 70 E R+F D + + ++ QP++EE++ V + ++E K+ L++ ++ + G + + +C Sbjct: 4 ERRLFMDKKVTEVVEALAQPIVEELNLELVDVEYVKEGKDWFLRVSIDSETG-VDIEECG 62 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 +S+ +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ Sbjct: 63 AVSERLSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKM 122 Query: 131 LIGKIM---GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 GK++ GT+ T K ++ E I I D + +ARL VT Sbjct: 123 FEGKLLSYDGTTITLLLTIKTRKKE-------IQIPMDKVANARLAVT 163 >gi|15640661|ref|NP_230290.1| hypothetical protein VC0641 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587845|ref|ZP_01677602.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|121728393|ref|ZP_01681421.1| conserved hypothetical protein [Vibrio cholerae V52] gi|147673580|ref|YP_001216135.1| hypothetical protein VC0395_A0172 [Vibrio cholerae O395] gi|153215845|ref|ZP_01950177.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|153801997|ref|ZP_01956583.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|153818682|ref|ZP_01971349.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|153822534|ref|ZP_01975201.1| conserved hypothetical protein [Vibrio cholerae B33] gi|153826540|ref|ZP_01979207.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|153829155|ref|ZP_01981822.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|227080822|ref|YP_002809373.1| hypothetical protein VCM66_0599 [Vibrio cholerae M66-2] gi|229505737|ref|ZP_04395247.1| clustered with transcription termination protein NusA [Vibrio cholerae BX 330286] gi|229509230|ref|ZP_04398715.1| clustered with transcription termination protein NusA [Vibrio cholerae B33] gi|229512903|ref|ZP_04402370.1| clustered with transcription termination protein NusA [Vibrio cholerae TMA 21] gi|229519561|ref|ZP_04409004.1| clustered with transcription termination protein NusA [Vibrio cholerae RC9] gi|229520932|ref|ZP_04410354.1| clustered with transcription termination protein NusA [Vibrio cholerae TM 11079-80] gi|229530446|ref|ZP_04419834.1| clustered with transcription termination protein NusA [Vibrio cholerae 12129(1)] gi|229608848|ref|YP_002879496.1| hypothetical protein VCD_003770 [Vibrio cholerae MJ-1236] gi|254292207|ref|ZP_04962975.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|254850875|ref|ZP_05240225.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255744142|ref|ZP_05418095.1| UPF0090 domain-containing protein [Vibrio cholera CIRS 101] gi|262156118|ref|ZP_06029237.1| UPF0090 domain-containing protein [Vibrio cholerae INDRE 91/1] gi|262169940|ref|ZP_06037630.1| UPF0090 domain-containing protein [Vibrio cholerae RC27] gi|262189772|ref|ZP_06048123.1| UPF0090 domain-containing protein [Vibrio cholerae CT 5369-93] gi|298500757|ref|ZP_07010560.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|34223077|sp|Q9KU82|RIMP_VIBCH RecName: Full=Ribosome maturation factor rimP gi|172047699|sp|A5F924|RIMP_VIBC3 RecName: Full=Ribosome maturation factor rimP gi|254806528|sp|C3LSP6|RIMP_VIBCM RecName: Full=Ribosome maturation factor rimP gi|9655077|gb|AAF93807.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547881|gb|EAX57965.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|121629327|gb|EAX61759.1| conserved hypothetical protein [Vibrio cholerae V52] gi|124114562|gb|EAY33382.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|124122456|gb|EAY41199.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|126510762|gb|EAZ73356.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|126519952|gb|EAZ77175.1| conserved hypothetical protein [Vibrio cholerae B33] gi|146315463|gb|ABQ20002.1| conserved hypothetical protein [Vibrio cholerae O395] gi|148875344|gb|EDL73479.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|149739720|gb|EDM53927.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|150421888|gb|EDN13867.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|227008710|gb|ACP04922.1| conserved hypothetical protein [Vibrio cholerae M66-2] gi|227012466|gb|ACP08676.1| conserved hypothetical protein [Vibrio cholerae O395] gi|229332219|gb|EEN97707.1| clustered with transcription termination protein NusA [Vibrio cholerae 12129(1)] gi|229342165|gb|EEO07161.1| clustered with transcription termination protein NusA [Vibrio cholerae TM 11079-80] gi|229344250|gb|EEO09225.1| clustered with transcription termination protein NusA [Vibrio cholerae RC9] gi|229350152|gb|EEO15105.1| clustered with transcription termination protein NusA [Vibrio cholerae TMA 21] gi|229353802|gb|EEO18738.1| clustered with transcription termination protein NusA [Vibrio cholerae B33] gi|229357960|gb|EEO22877.1| clustered with transcription termination protein NusA [Vibrio cholerae BX 330286] gi|229371503|gb|ACQ61926.1| clustered with transcription termination protein NusA [Vibrio cholerae MJ-1236] gi|254846580|gb|EET24994.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255738082|gb|EET93474.1| UPF0090 domain-containing protein [Vibrio cholera CIRS 101] gi|262021674|gb|EEY40385.1| UPF0090 domain-containing protein [Vibrio cholerae RC27] gi|262030154|gb|EEY48799.1| UPF0090 domain-containing protein [Vibrio cholerae INDRE 91/1] gi|262034349|gb|EEY52738.1| UPF0090 domain-containing protein [Vibrio cholerae CT 5369-93] gi|297540538|gb|EFH76596.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|327483443|gb|AEA77850.1| hypothetical protein VCLMA_A0562 [Vibrio cholerae LMA3894-4] Length = 151 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 59/83 (71%), Gaps = 1/83 (1%) Query: 53 LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRW 112 L+IF++ ++G +T+ DC E+S+ +S +LDVE+ I Y LEVSSPG++RP+ + + + ++ Sbjct: 37 LRIFIDHENG-ITVEDCAEVSRQVSAVLDVEDPISVVYNLEVSSPGLERPLFKAAHYEQF 95 Query: 113 NGHVVACEIVLSSGDKQKLIGKI 135 GH V+ + ++ G+++K G I Sbjct: 96 IGHEVSIVLKMAVGNRRKWKGVI 118 >gi|49610183|emb|CAG73625.1| conserved hypothetical protein [Pectobacterium atrosepticum SCRI1043] Length = 140 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 64/107 (59%), Gaps = 1/107 (0%) Query: 29 IQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEG 88 I + + + V I + + L+I+++ +DG +T+ DC ++S +S +LDVE+ I Sbjct: 2 ISAPVAALGYELVGIEFIRSRQSTLRIYIDSEDG-ITVDDCADVSHQVSAVLDVEDPITV 60 Query: 89 HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 Y LEVSSPG++RP+ + +L + G VA + ++ +++K +G I Sbjct: 61 AYNLEVSSPGLERPLFTAAHYLHFVGEEVAVVLRMAVQNRRKWLGVI 107 >gi|259585819|sp|B2VGS4|RIMP_ERWT9 RecName: Full=Ribosome maturation factor rimP Length = 152 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 69/120 (57%), Gaps = 4/120 (3%) Query: 19 MGLAG---DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 MGL+ ++ +I +E + + V I + + L+I+++ +DG + + DC ++S Sbjct: 1 MGLSTLEQKLTELISAPVEALGYELVGIEFVRGRTSTLRIYIDSEDG-INVDDCADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S ++DVE+ I Y LEVSSPG+DRPM + R+ G V+ + ++ +++K G I Sbjct: 60 VSAVMDVEDPITVAYNLEVSSPGLDRPMFTAEHYARFTGEEVSLVLRMAVQNRRKWQGII 119 >gi|238755154|ref|ZP_04616500.1| hypothetical protein yruck0001_25670 [Yersinia ruckeri ATCC 29473] gi|238706601|gb|EEP98972.1| hypothetical protein yruck0001_25670 [Yersinia ruckeri ATCC 29473] Length = 152 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 68/120 (56%), Gaps = 4/120 (3%) Query: 19 MGLAG---DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 MGL+ ++ +I +E + + V I + + L+I+++ +DG +T+ C ++S Sbjct: 1 MGLSTLEQKLTEIISAPVEALGYELVGIEFIRGRQSTLRIYIDSEDG-ITVDACADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LEVSSPG+DRPM + R+ G V + ++ +++K G I Sbjct: 60 VSAVLDVEDPITVAYNLEVSSPGLDRPMFTAEHYARYLGETVILVLRMAMQNRRKWQGII 119 >gi|304310505|ref|YP_003810103.1| Protein of unknown function DUF150 [gamma proteobacterium HdN1] gi|301796238|emb|CBL44446.1| Protein of unknown function DUF150 [gamma proteobacterium HdN1] Length = 154 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 58/92 (63%), Gaps = 1/92 (1%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSD 108 K+ +L++F++ ++G +T+ DCE +S +S +LDVE+ + G Y LEVSSPG+DRP+ Sbjct: 35 KHSVLRLFIDSENG-VTIDDCERVSHQVSAVLDVEDPVSGEYHLEVSSPGMDRPLFGAEQ 93 Query: 109 FLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 R+ + + ++ K+ +GK++ SE Sbjct: 94 LGRYIHCEIKVRLKMAVDGKRNFVGKLLAVSE 125 >gi|149189796|ref|ZP_01868077.1| hypothetical protein VSAK1_11003 [Vibrio shilonii AK1] gi|148836445|gb|EDL53401.1| hypothetical protein VSAK1_11003 [Vibrio shilonii AK1] Length = 151 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 73/117 (62%), Gaps = 2/117 (1%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 GL ++ +++ +E + + V + + ++ L+I+++ +DG +T+ C E+S +S Sbjct: 3 GLERQLTELLEAPVEALGYELVGLEFIRAGEHSTLRIYIDHEDG-ITVDACAEVSHQVSA 61 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 ++DVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ G+++K G I Sbjct: 62 VMDVEDPITVAYNLEVSSPGLERPLFKAAHYEQFIGHEVSIVLKMAVGNRRKWKGTI 118 >gi|288817342|ref|YP_003431689.1| hypothetical protein HTH_0021 [Hydrogenobacter thermophilus TK-6] gi|288786741|dbj|BAI68488.1| hypothetical protein HTH_0021 [Hydrogenobacter thermophilus TK-6] gi|308750949|gb|ADO44432.1| protein of unknown function DUF150 [Hydrogenobacter thermophilus TK-6] Length = 157 Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 69/116 (59%), Gaps = 1/116 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + + +P+I+ + F+ + E+ +L++ +++D G +T+ DCEE+S+ +S +LDVE+ Sbjct: 12 VRQLAEPIIKNLGFKLFDVEFKPERGWVLRVILDKD-GGITVNDCEEVSKRLSALLDVED 70 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 II Y LEVSSPG+ R + + + + G ++ + + K++L G I+ E Sbjct: 71 IIPTSYILEVSSPGLTRELTKPEHYEFFKGRLIRLVLREALEGKRELKGYIVDVKE 126 >gi|221134837|ref|ZP_03561140.1| hypothetical protein GHTCC_07897 [Glaciecola sp. HTCC2999] Length = 165 Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 69/127 (54%), Gaps = 2/127 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ ++ P E + F V + + K+ +L++F++ DG +++ C ++SQ S I Sbjct: 17 LEKKLTEMLTPAAESLGFEMVGVEFVRAGKHSILRVFIDHPDG-ISVDHCADVSQQASAI 75 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ + + + G +VA + + +++ G ++ Sbjct: 76 LDVEDPINTEYNLEVSSPGMDRPLFKTAHYEAIVGEMVAVRLRMPMNERRNFKGTLLSCE 135 Query: 140 ETGFFLE 146 +E Sbjct: 136 NDNIVVE 142 >gi|226946309|ref|YP_002801382.1| hypothetical protein Avin_42840 [Azotobacter vinelandii DJ] gi|259585700|sp|C1DFL1|RIMP_AZOVD RecName: Full=Ribosome maturation factor rimP gi|226721236|gb|ACO80407.1| Conserved hypothetical protein [Azotobacter vinelandii DJ] Length = 145 Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 60/94 (63%), Gaps = 2/94 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +++ PV+E + + I L + ++ LL+++++ DG + + DCE++S+ IS +LDVE Sbjct: 1 MQALLAPVVEALGYECWGIEFLSQGRHSLLRVYIDHADG-ILIDDCEKVSRQISGVLDVE 59 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + I Y LEVSSPG+DRP+ F+R G V Sbjct: 60 DPISSEYTLEVSSPGMDRPLFTLEQFVRCAGEQV 93 >gi|229525294|ref|ZP_04414699.1| clustered with transcription termination protein NusA [Vibrio cholerae bv. albensis VL426] gi|229338875|gb|EEO03892.1| clustered with transcription termination protein NusA [Vibrio cholerae bv. albensis VL426] Length = 151 Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 59/83 (71%), Gaps = 1/83 (1%) Query: 53 LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRW 112 L+IF++ ++G +T+ DC E+S+ +S +LDVE+ I Y LEVSSPG++RP+ + + + ++ Sbjct: 37 LRIFIDHENG-ITVEDCAEVSRQVSAVLDVEDPISVVYNLEVSSPGLERPLFKAAHYEQF 95 Query: 113 NGHVVACEIVLSSGDKQKLIGKI 135 GH V+ + ++ G+++K G I Sbjct: 96 IGHEVSIVLKMAVGNRRKWKGII 118 >gi|300113655|ref|YP_003760230.1| hypothetical protein Nwat_0966 [Nitrosococcus watsonii C-113] gi|299539592|gb|ADJ27909.1| protein of unknown function DUF150 [Nitrosococcus watsonii C-113] Length = 151 Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 39/102 (38%), Positives = 59/102 (57%), Gaps = 5/102 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE--KNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 IS ++ PV+ + + V + L K +LL+I+++ G +T+ DCE S IS +LDV Sbjct: 7 ISKLVGPVVAALGYELVGVERLSSVGKGVLLRIYIDAPSG-VTVNDCERTSHQISALLDV 65 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS 124 E + Y LE+SSPG+DRP+ + F R+ G V I LS Sbjct: 66 EEPMASAYTLEISSPGLDRPLFTEEHFKRFTG--VEASITLS 105 >gi|331007795|ref|ZP_08330908.1| clustered with transcription termination protein NusA [gamma proteobacterium IMCC1989] gi|330418394|gb|EGG92947.1| clustered with transcription termination protein NusA [gamma proteobacterium IMCC1989] Length = 163 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 76/137 (55%), Gaps = 12/137 (8%) Query: 25 ISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVER-------DD----GNMTLRDCEEL 72 ++++I+PV+E + + + L++ + L+I++E+ DD + L DCE++ Sbjct: 8 LTALIEPVVESLGCQLWGLEYLVQGRQATLRIYIEKAADSESSDDTKKESGVGLHDCEKV 67 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+ +S +LDVE+ I HY LEVSSPG+DRP+ + + G V+ ++ D++ I Sbjct: 68 SRQVSSVLDVEDPISSHYTLEVSSPGMDRPLFLLAHYHSSVGEKVSIKLSRKFDDRKNFI 127 Query: 133 GKIMGTSETGFFLEKEK 149 G I G + L E+ Sbjct: 128 GVIAGVEDDEVILRVEE 144 >gi|240116050|ref|ZP_04730112.1| hypothetical protein NgonPID1_07356 [Neisseria gonorrhoeae PID18] gi|260440136|ref|ZP_05793952.1| hypothetical protein NgonDG_03444 [Neisseria gonorrhoeae DGI2] Length = 143 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 66/114 (57%), Gaps = 5/114 (4%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++++ + + + L + L ++F++++ G +T+ DC +S +S + VE Sbjct: 2 DIQTILEKTLPGLGYELADFELAAQGTL--RVFIDKE-GGITVEDCATVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +I G+ LE+SSPG+DRP+ + +DF+R+ G + L G ++ IGKI G Sbjct: 59 DI--GYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIGGQKNFIGKIEG 110 >gi|254302279|ref|ZP_04969637.1| hypothetical protein FNP_2331 [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322471|gb|EDK87721.1| hypothetical protein FNP_2331 [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 156 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 75/139 (53%), Gaps = 4/139 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I+ +I P IEEM V + +++ ++IF+E +G++ + DC +LS I VE Sbjct: 11 ITKIINPFIEEMGLSLVDVEYVQDGGYWYVRIFIENLNGDLNIEDCSKLSSKIED--KVE 68 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS-ETG 142 +IE + LEVSSPG++RP+ + D++R+ G + + DK++ I + + Sbjct: 69 ELIEHKFFLEVSSPGLERPLKKLEDYIRFTGEKITLHLKHKLDDKKQFKAIIKEVNGDNI 128 Query: 143 FFLEKEKRGEKDMNELQIA 161 FL +K E NE++ A Sbjct: 129 IFLIDKKEIEIKFNEIRKA 147 >gi|288940249|ref|YP_003442489.1| hypothetical protein Alvin_0500 [Allochromatium vinosum DSM 180] gi|288895621|gb|ADC61457.1| protein of unknown function DUF150 [Allochromatium vinosum DSM 180] Length = 151 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 74/143 (51%), Gaps = 10/143 (6%) Query: 32 VIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHY 90 V+E + + V + ++ L+++++ + G +TL DC +S +S +LDVE+ I Y Sbjct: 15 VVEPLGYELVGVEYFQKGGGATLRVYIDHERG-ITLDDCTAVSHQLSGVLDVEDPISDQY 73 Query: 91 RLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKR 150 LEVSSPG+DRP+V F R+ G V + ++KL G ++G G L ++R Sbjct: 74 DLEVSSPGLDRPLVFPEHFERFAGSRVRIRLSEKIEGRRKLEGVLLGVVPGGVALRADER 133 Query: 151 GEKDMNELQIAISFDSLLSARLI 173 I S+ SARLI Sbjct: 134 --------DWEIPLTSIDSARLI 148 >gi|238750124|ref|ZP_04611627.1| hypothetical protein yrohd0001_7050 [Yersinia rohdei ATCC 43380] gi|238761766|ref|ZP_04622740.1| hypothetical protein ykris0001_12910 [Yersinia kristensenii ATCC 33638] gi|332160077|ref|YP_004296654.1| hypothetical protein YE105_C0453 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|167012934|sp|A1JIW7|RIMP_YERE8 RecName: Full=Ribosome maturation factor rimP gi|122087772|emb|CAL10558.1| conserved hypothetical protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|238699880|gb|EEP92623.1| hypothetical protein ykris0001_12910 [Yersinia kristensenii ATCC 33638] gi|238711668|gb|EEQ03883.1| hypothetical protein yrohd0001_7050 [Yersinia rohdei ATCC 43380] gi|325664307|gb|ADZ40951.1| hypothetical protein YE105_C0453 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 152 Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 68/120 (56%), Gaps = 4/120 (3%) Query: 19 MGLAG---DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 MGL+ ++ +I +E + + V I + + L+I+++ DDG +T+ C ++S Sbjct: 1 MGLSTLEQKLTEIISAPVEALGYELVGIEFIRGRQSTLRIYIDSDDG-ITVDACADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LEVSSPG++RPM + R+ G V + ++ +++K G I Sbjct: 60 VSAVLDVEDPITVAYNLEVSSPGLERPMFTAEHYTRYLGEEVTLVLRMAMQNRRKWQGII 119 >gi|29654725|ref|NP_820417.1| hypothetical cytosolic protein [Coxiella burnetii RSA 493] gi|161830413|ref|YP_001597278.1| hypothetical protein COXBURSA331_A1602 [Coxiella burnetii RSA 331] gi|34223106|sp|Q83BR9|RIMP_COXBU RecName: Full=Ribosome maturation factor rimP gi|189038961|sp|A9N8V8|RIMP_COXBR RecName: Full=Ribosome maturation factor rimP gi|29541993|gb|AAO90931.1| hypothetical cytosolic protein [Coxiella burnetii RSA 493] gi|161762280|gb|ABX77922.1| conserved hypothetical protein [Coxiella burnetii RSA 331] Length = 153 Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 58/98 (59%), Gaps = 2/98 (2%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M A + +I P +E + F V L +LQ+FV++ G + L +C ++S+ IS Sbjct: 1 MSQARTLHRLIAPAVEALGFELVGCELFRRGATTILQVFVDKP-GGIGLDECAKVSRQIS 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGH 115 +LDVE+ I G Y LEVSSPG++RP+ + + R+ G+ Sbjct: 60 AVLDVEDPIRGRYTLEVSSPGLERPLYTANHYRRFIGN 97 >gi|169342738|ref|ZP_02863778.1| conserved hypothetical protein [Clostridium perfringens C str. JGS1495] gi|169299244|gb|EDS81314.1| conserved hypothetical protein [Clostridium perfringens C str. JGS1495] Length = 170 Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 72/129 (55%), Gaps = 1/129 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L D+ ++ P+++E + I ++E N L++++E+ + ++LRDCE +S+A+S + Sbjct: 22 LVADLEALCAPIVKEKGYDLYHIEYVKENNEYYLRLYIEKPEERISLRDCEIVSRALSDM 81 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD+E+ I+ Y LEVSSPG++R + F R+ G V S ++ + G + Sbjct: 82 LDIEDPIKDAYFLEVSSPGLNRRLHSDEHFNRFIGKEVFVGFKSSLSGRKNVKGILKDVQ 141 Query: 140 ETGFFLEKE 148 E +E E Sbjct: 142 ENEIIVECE 150 >gi|109898013|ref|YP_661268.1| hypothetical protein Patl_1693 [Pseudoalteromonas atlantica T6c] gi|122972050|sp|Q15V74|RIMP_PSEA6 RecName: Full=Ribosome maturation factor rimP gi|109700294|gb|ABG40214.1| protein of unknown function DUF150 [Pseudoalteromonas atlantica T6c] Length = 152 Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 69/121 (57%), Gaps = 2/121 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ ++ +E + F V I + K+ ++++++ DG +++ C E+S +S + Sbjct: 4 LEQKLTEMLTAPVEALGFEMVGIEFVRAGKHSTMRVYIDHPDG-ISVDHCAEVSHQVSAV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG++RP+ + ++ G VV + + GD++ GK++ + Sbjct: 63 LDVEDPINTEYNLEVSSPGMERPLFKLQHYIESVGEVVTLRLKMPMGDRRNFKGKLLSEA 122 Query: 140 E 140 + Sbjct: 123 D 123 >gi|256846937|ref|ZP_05552391.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2] gi|294784278|ref|ZP_06749573.1| conserved hypothetical protein [Fusobacterium sp. 3_1_27] gi|256717735|gb|EEU31294.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2] gi|294488144|gb|EFG35495.1| conserved hypothetical protein [Fusobacterium sp. 3_1_27] Length = 156 Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 76/139 (54%), Gaps = 4/139 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I+ ++ P IEEM+ V + +++ ++IF+E +G++ + DC +LS I VE Sbjct: 11 ITKIVNPFIEEMNLSLVDVEYVQDGGYWYIRIFIENLNGDLNIEDCSKLSSKIED--KVE 68 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS-ETG 142 +IE + LEVSSPG++RP+ + D++R+ G + + DK++ I + + Sbjct: 69 GLIEHKFFLEVSSPGLERPLKKIEDYVRFTGEKITLHLKHKLDDKKQFKAIIKEVNGDNI 128 Query: 143 FFLEKEKRGEKDMNELQIA 161 FL +K E NE++ A Sbjct: 129 IFLIDKKEIEIKFNEIRKA 147 >gi|220934177|ref|YP_002513076.1| protein of unknown function DUF150 [Thioalkalivibrio sp. HL-EbGR7] gi|259645128|sp|B8GP00|RIMP_THISH RecName: Full=Ribosome maturation factor rimP gi|219995487|gb|ACL72089.1| protein of unknown function DUF150 [Thioalkalivibrio sp. HL-EbGR7] Length = 154 Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 71/127 (55%), Gaps = 2/127 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++++P++ M ++ + + + + LL++F++ + G +TL DC E+S+ +S ++DVE Sbjct: 3 LKALLEPLVTRMGYQLWGMEFRVAKHSALLRLFIDSEQG-ITLDDCTEVSRQVSALMDVE 61 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I+ Y LEVSSPG+DRP+ + R+ G V ++ G I+ E Sbjct: 62 DPIQVPYTLEVSSPGVDRPLFEAGQYARYVGEQVRVRTQWPIDGQRNFAGAIVSADEDSV 121 Query: 144 FLEKEKR 150 L+ + R Sbjct: 122 TLDVDGR 128 >gi|212212196|ref|YP_002303132.1| hypothetical protein CbuG_0575 [Coxiella burnetii CbuG_Q212] gi|226707750|sp|B6IZ59|RIMP_COXB2 RecName: Full=Ribosome maturation factor rimP gi|212010606|gb|ACJ17987.1| hypothetical cytosolic protein [Coxiella burnetii CbuG_Q212] Length = 153 Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 58/98 (59%), Gaps = 2/98 (2%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M A + +I P +E + F V L +LQ+FV++ G + L +C ++S+ IS Sbjct: 1 MSQARTLHRLIAPAVEALGFELVGCELFRRGATTILQVFVDKP-GGIGLDECAKVSRQIS 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGH 115 +LDVE+ I G Y LEVSSPG++RP+ + + R+ G+ Sbjct: 60 AVLDVEDPIRGRYTLEVSSPGLERPLYTANHYRRFIGN 97 >gi|259585813|sp|Q2SML5|RIMP_HAHCH RecName: Full=Ribosome maturation factor rimP Length = 150 Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 67/116 (57%), Gaps = 2/116 (1%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M D+ +++PV+E M + + + K LL+I+++++ G + + DCE++S+ IS Sbjct: 1 MARKDDLYQLLKPVVEGMGCDFWGMDYIAQGKRSLLRIYIDKESG-VLVDDCEKVSRQIS 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 ILDVE+ I+G Y LEVSSPG DRP+ + + G ++ + ++K G Sbjct: 60 AILDVEDPIKGEYTLEVSSPGWDRPLFNVEQYKAYIGSIIEVRLQAPFNGRRKFKG 115 >gi|153207258|ref|ZP_01946022.1| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177'] gi|165918794|ref|ZP_02218880.1| conserved hypothetical protein [Coxiella burnetii RSA 334] gi|212218227|ref|YP_002305014.1| hypothetical protein CbuK_0601 [Coxiella burnetii CbuK_Q154] gi|226707776|sp|B6J6A9|RIMP_COXB1 RecName: Full=Ribosome maturation factor rimP gi|120576746|gb|EAX33370.1| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177'] gi|165917518|gb|EDR36122.1| conserved hypothetical protein [Coxiella burnetii RSA 334] gi|212012489|gb|ACJ19869.1| hypothetical cytosolic protein [Coxiella burnetii CbuK_Q154] Length = 153 Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 58/98 (59%), Gaps = 2/98 (2%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M A + +I P +E + F V L +LQ+FV++ G + L +C ++S+ IS Sbjct: 1 MSQARTLHRLIAPAVEALGFELVGCELFRRGATTILQVFVDKP-GGIGLDECAKVSRQIS 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGH 115 +LDVE+ I G Y LEVSSPG++RP+ + + R+ G+ Sbjct: 60 AVLDVEDPIRGRYTLEVSSPGLERPLYTANHYRRFIGN 97 >gi|254038336|ref|ZP_04872394.1| conserved hypothetical protein [Escherichia sp. 1_1_43] gi|293449506|ref|ZP_06663927.1| hypothetical protein ECCG_02538 [Escherichia coli B088] gi|226839960|gb|EEH71981.1| conserved hypothetical protein [Escherichia sp. 1_1_43] gi|291322596|gb|EFE62025.1| hypothetical protein ECCG_02538 [Escherichia coli B088] Length = 163 Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 64/111 (57%), Gaps = 1/111 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I +E + F V I + + L+I+++ +DG + + DC ++S +S +LDVE+ Sbjct: 21 LTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVED 79 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I Y LEVSSPG+DRP+ + R+ G V + ++ +++K G I Sbjct: 80 PITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 130 >gi|91208368|sp|Q3SKW9|RIMP_THIDA RecName: Full=Ribosome maturation factor rimP Length = 142 Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 73/115 (63%), Gaps = 7/115 (6%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDV 82 D+ + ++PV+ + + ++ +LE LL+IF+++ G +T+ DC +S ++ + V Sbjct: 3 DLPARLEPVLAGLGY---ELVMLERAGRGLLRIFIDKP-GGVTIDDCVAVSNHLTHLFTV 58 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ENI + RLEVSSPG+DRP+V+ D+ R+ G V ++ + ++++L G+++G Sbjct: 59 ENI--DYDRLEVSSPGLDRPLVKPQDYARFAGEQVTLKLRVPMDNRRRLSGQLLG 111 >gi|284048696|ref|YP_003399035.1| protein of unknown function DUF150 [Acidaminococcus fermentans DSM 20731] gi|283952917|gb|ADB47720.1| protein of unknown function DUF150 [Acidaminococcus fermentans DSM 20731] Length = 153 Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 1/126 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ + P++EE V + + E++ L++F+++ G + + DC +S A++ LD E+ Sbjct: 10 VTDLAAPIVEEAGLELVDVEYVRERDWFLRVFIDKA-GGIDIDDCSAVSNALAKKLDEED 68 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I+ Y LEVSSPGIDRP+ + D G V K++L + Sbjct: 69 FIKEKYYLEVSSPGIDRPLKKDKDLEAHYGQKVDLAFFAPYEGKKQLTAVLKSHDAEKLV 128 Query: 145 LEKEKR 150 LE K+ Sbjct: 129 LEDAKK 134 >gi|191172206|ref|ZP_03033749.1| conserved hypothetical protein [Escherichia coli F11] gi|194433780|ref|ZP_03066055.1| conserved hypothetical protein [Shigella dysenteriae 1012] gi|227887893|ref|ZP_04005698.1| UPF0090 protein yhbC [Escherichia coli 83972] gi|238902274|ref|YP_002928070.1| hypothetical protein BWG_2874 [Escherichia coli BW2952] gi|291284546|ref|YP_003501364.1| hypothetical protein G2583_3895 [Escherichia coli O55:H7 str. CB9615] gi|331659459|ref|ZP_08360401.1| putative cytoplasmic protein [Escherichia coli TA206] gi|331664784|ref|ZP_08365689.1| putative cytoplasmic protein [Escherichia coli TA143] gi|331669999|ref|ZP_08370844.1| putative cytoplasmic protein [Escherichia coli TA271] gi|331684819|ref|ZP_08385411.1| putative cytoplasmic protein [Escherichia coli H299] gi|67476527|sp|P0A8A9|RIMP_ECOL6 RecName: Full=Ribosome maturation factor rimP gi|67476528|sp|P0A8B0|RIMP_ECO57 RecName: Full=Ribosome maturation factor rimP gi|67476531|sp|P0A8B1|RIMP_SHIFL RecName: Full=Ribosome maturation factor rimP gi|91208385|sp|Q32BG3|RIMP_SHIDS RecName: Full=Ribosome maturation factor rimP gi|91208386|sp|Q3YX71|RIMP_SHISS RecName: Full=Ribosome maturation factor rimP gi|166979883|sp|A1AG75|RIMP_ECOK1 RecName: Full=Ribosome maturation factor rimP gi|259585759|sp|C4ZSR1|RIMP_ECOBW RecName: Full=Ribosome maturation factor rimP gi|259585820|sp|B6I1P5|RIMP_ECOSE RecName: Full=Ribosome maturation factor rimP gi|259585821|sp|B1LFS2|RIMP_ECOSM RecName: Full=Ribosome maturation factor rimP gi|259585822|sp|Q1R6G7|RIMP_ECOUT RecName: Full=Ribosome maturation factor rimP gi|259585823|sp|B5YS60|RIMP_ECO5E RecName: Full=Ribosome maturation factor rimP gi|259585825|sp|B1IQV1|RIMP_ECOLC RecName: Full=Ribosome maturation factor rimP gi|259585826|sp|B7UJ65|RIMP_ECO27 RecName: Full=Ribosome maturation factor rimP gi|12517781|gb|AAG58306.1|AE005545_8 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|606110|gb|AAA57973.1| gtg start; differences from database entry [Escherichia coli str. K-12 substr. MG1655] gi|13363524|dbj|BAB37474.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|30042769|gb|AAP18492.1| hypothetical protein S3428 [Shigella flexneri 2a str. 2457T] gi|56383831|gb|AAN44678.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|73857184|gb|AAZ89891.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|81242632|gb|ABB63342.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|115514590|gb|ABJ02665.1| conserved hypothetical protein [Escherichia coli APEC O1] gi|190907516|gb|EDV67112.1| conserved hypothetical protein [Escherichia coli F11] gi|194418043|gb|EDX34137.1| conserved hypothetical protein [Shigella dysenteriae 1012] gi|209758318|gb|ACI77471.1| hypothetical protein ECs4051 [Escherichia coli] gi|209758320|gb|ACI77472.1| hypothetical protein ECs4051 [Escherichia coli] gi|209758322|gb|ACI77473.1| hypothetical protein ECs4051 [Escherichia coli] gi|209758324|gb|ACI77474.1| hypothetical protein ECs4051 [Escherichia coli] gi|209758326|gb|ACI77475.1| hypothetical protein ECs4051 [Escherichia coli] gi|222034889|emb|CAP77632.1| UPF0090 protein yhbC [Escherichia coli LF82] gi|227835289|gb|EEJ45755.1| UPF0090 protein yhbC [Escherichia coli 83972] gi|238860383|gb|ACR62381.1| conserved protein [Escherichia coli BW2952] gi|281602554|gb|ADA75538.1| hypothetical protein SFxv_3524 [Shigella flexneri 2002017] gi|290764419|gb|ADD58380.1| hypothetical protein G2583_3895 [Escherichia coli O55:H7 str. CB9615] gi|323936134|gb|EGB32428.1| yhbC protein [Escherichia coli E1520] gi|323941728|gb|EGB37907.1| yhbC [Escherichia coli E482] gi|323946974|gb|EGB42990.1| yhbC protein [Escherichia coli H120] gi|323951310|gb|EGB47185.1| yhbC [Escherichia coli H252] gi|323957681|gb|EGB53395.1| yhbC [Escherichia coli H263] gi|323961058|gb|EGB56673.1| yhbC [Escherichia coli H489] gi|323966352|gb|EGB61786.1| yhbC [Escherichia coli M863] gi|323970265|gb|EGB65536.1| yhbC [Escherichia coli TA007] gi|323979111|gb|EGB74189.1| yhbC [Escherichia coli TW10509] gi|324115224|gb|EGC09188.1| yhbC [Escherichia fergusonii B253] gi|324119537|gb|EGC13419.1| yhbC [Escherichia coli E1167] gi|325498753|gb|EGC96612.1| hypothetical protein ECD227_2850 [Escherichia fergusonii ECD227] gi|331054041|gb|EGI26070.1| putative cytoplasmic protein [Escherichia coli TA206] gi|331058032|gb|EGI30014.1| putative cytoplasmic protein [Escherichia coli TA143] gi|331062912|gb|EGI34826.1| putative cytoplasmic protein [Escherichia coli TA271] gi|331078434|gb|EGI49640.1| putative cytoplasmic protein [Escherichia coli H299] Length = 152 Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 68/120 (56%), Gaps = 4/120 (3%) Query: 19 MGLAG---DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 MGL+ ++ +I +E + F V I + + L+I+++ +DG + + DC ++S Sbjct: 1 MGLSTLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LEVSSPG+DRP+ + R+ G V + ++ +++K G I Sbjct: 60 VSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 119 >gi|33152525|ref|NP_873878.1| hypothetical protein HD1463 [Haemophilus ducreyi 35000HP] gi|51316788|sp|Q7VLI0|RIMP_HAEDU RecName: Full=Ribosome maturation factor rimP gi|33148748|gb|AAP96267.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP] Length = 154 Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 70/129 (54%), Gaps = 2/129 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I IE M + V + L ++++++++ G +T+ DC ++S+ +S I DVE Sbjct: 8 LTVLISDTIESMGYELVGVECQHAGRFLTVRLYIDKE-GGVTIDDCSDVSRQVSAIFDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I Y LEVSSPG+DRP+ + + R+ G + + + D++K GK+ Sbjct: 67 DPISDKYNLEVSSPGLDRPLFTLAHYARFVGREMVIHLRIPMFDRRKWQGKLTKVDGDLI 126 Query: 144 FLEKEKRGE 152 LE E GE Sbjct: 127 SLEIENNGE 135 >gi|229576801|ref|YP_001004802.2| hypothetical protein YE0432 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318607363|emb|CBY28861.1| clustered with transcription termination protein NusA [Yersinia enterocolitica subsp. palearctica Y11] gi|330862030|emb|CBX72197.1| UPF0090 protein YE0432 [Yersinia enterocolitica W22703] Length = 150 Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 64/111 (57%), Gaps = 1/111 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I +E + + V I + + L+I+++ DDG +T+ C ++S +S +LDVE+ Sbjct: 8 LTEIISAPVEALGYELVGIEFIRGRQSTLRIYIDSDDG-ITVDACADVSHQVSAVLDVED 66 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I Y LEVSSPG++RPM + R+ G V + ++ +++K G I Sbjct: 67 PITVAYNLEVSSPGLERPMFTAEHYTRYLGEEVTLVLRMAMQNRRKWQGII 117 >gi|226940849|ref|YP_002795923.1| hypothetical protein LHK_01930 [Laribacter hongkongensis HLHK9] gi|254800662|sp|C1D8X4|RIMP_LARHH RecName: Full=Ribosome maturation factor rimP gi|226715776|gb|ACO74914.1| Uncharacterized protein conserved in bacteria [Laribacter hongkongensis HLHK9] Length = 141 Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 83/149 (55%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 D+ ++++ + + + V L L+++F++ G + L DC ++S ++ + VE Sbjct: 2 DVRTLLETTLSGLGYELVDFEL--GHGGLMRVFIDAPAG-IALDDCVKVSNHLTRLFTVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DRP+ R++D+ R+ G V + L G+++K G ++G + Sbjct: 59 NI--DYDRLEVSSPGLDRPLTREADYARFAGERVRIKTRLPIGERKKFAGTLVGLA---- 112 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + E D++ ++AI S+ ARL Sbjct: 113 ----DGQVELDIDGERVAIPLASIDKARL 137 >gi|262274885|ref|ZP_06052696.1| UPF0090 domain-containing protein [Grimontia hollisae CIP 101886] gi|262221448|gb|EEY72762.1| UPF0090 domain-containing protein [Grimontia hollisae CIP 101886] Length = 151 Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 74/118 (62%), Gaps = 2/118 (1%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 GL + ++++ ++ + + V + + ++ L+I+++ ++G +T+ DC E+S+ +S Sbjct: 3 GLEKQLLALLEAPVKALDYELVGLEFVRAGQHSTLRIYIDHENG-ITVEDCAEVSRQVSA 61 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 ++DVE+ I Y LEVSSPG++RP+ + + R+ GH V + ++ +++K G+I+ Sbjct: 62 VMDVEDPITVAYNLEVSSPGLERPLFKAEHYQRFVGHEVTIVLKMAMQNRRKWKGEIL 119 >gi|259585827|sp|A8AQ61|RIMP_CITK8 RecName: Full=Ribosome maturation factor rimP Length = 152 Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 68/120 (56%), Gaps = 4/120 (3%) Query: 19 MGLAG---DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 MGL+ ++ +I +E + + V I + + L+I+++ +DG + + DC ++S Sbjct: 1 MGLSTLEQKLTEMITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LEVSSPG+DRPM + R+ G V + ++ +++K G I Sbjct: 60 VSAVLDVEDPITVAYNLEVSSPGLDRPMFTAEHYARFLGEEVTLVLRMAVQNRRKWQGVI 119 >gi|225572727|ref|ZP_03781482.1| hypothetical protein RUMHYD_00916 [Blautia hydrogenotrophica DSM 10507] gi|225039900|gb|EEG50146.1| hypothetical protein RUMHYD_00916 [Blautia hydrogenotrophica DSM 10507] Length = 155 Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 75/136 (55%), Gaps = 2/136 (1%) Query: 28 VIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 +I P++E F V + ++E N L+++++++ G +T+ DCE +S+A S +LD + I Sbjct: 14 MILPLVEAQRFELVDVEYVKEAGNWYLRVYIDKE-GGITVDDCELISRAFSDLLDEADFI 72 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE 146 E Y LEVSSPG+ RP+ ++ D+ R G + +++ G ++ +E Sbjct: 73 EDSYILEVSSPGLGRPLKKEKDYARSMGKELEIRTYRPIDKQKEFYGILLAYDNNSVTIE 132 Query: 147 KEKRGEKDMNELQIAI 162 ++ + + + +IA+ Sbjct: 133 EQDKTRRTFEKKEIAL 148 >gi|253686984|ref|YP_003016174.1| hypothetical protein PC1_0583 [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753562|gb|ACT11638.1| protein of unknown function DUF150 [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 191 Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 66/111 (59%), Gaps = 1/111 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I + + + V I + + L+I+++ +DG +T+ DC ++S +S +LDVE+ Sbjct: 49 LTEMISAPVAALGYELVGIEFIRSRQSTLRIYIDSEDG-ITVDDCADVSHQVSAVLDVED 107 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I Y LEVSSPG++RP+ + +L + G V + ++ +++K +G I Sbjct: 108 PITVAYNLEVSSPGLERPLFTAAHYLHFVGEEVTVVLRMAVQNRRKWLGVI 158 >gi|290454910|emb|CBJ57168.1| YhbC-like protein [Pectobacterium carotovorum] Length = 152 Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 66/111 (59%), Gaps = 1/111 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I + + + V I + + L+I+++ +DG +T+ DC ++S +S +LDVE+ Sbjct: 10 LTEMISAPVAALGYELVGIEFIRSRQSTLRIYIDSEDG-ITVDDCADVSHQVSAVLDVED 68 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I Y LEVSSPG++RP+ + +L + G V + ++ +++K +G I Sbjct: 69 PITVAYNLEVSSPGLERPLFTAAHYLHFVGEEVTVVLRMAVQNRRKWLGVI 119 >gi|227112573|ref|ZP_03826229.1| hypothetical protein PcarbP_06402 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227327825|ref|ZP_03831849.1| hypothetical protein PcarcW_11031 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 150 Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 66/111 (59%), Gaps = 1/111 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I + + + V I + + L+I+++ +DG +T+ DC ++S +S +LDVE+ Sbjct: 8 LTEMISAPVAALGYELVGIEFIRSRQSTLRIYIDSEDG-ITVDDCADVSHQVSAVLDVED 66 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I Y LEVSSPG++RP+ + +L + G V + ++ +++K +G I Sbjct: 67 PITVAYNLEVSSPGLERPLFTAAHYLHFVGEEVTVVLRMAVQNRRKWLGVI 117 >gi|325290364|ref|YP_004266545.1| Ribosome maturation factor rimP [Syntrophobotulus glycolicus DSM 8271] gi|324965765|gb|ADY56544.1| Ribosome maturation factor rimP [Syntrophobotulus glycolicus DSM 8271] Length = 152 Score = 67.8 bits (164), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 61/94 (64%), Gaps = 2/94 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +++P+ EE+ V + ++E + L++++++D G + + DC +S +S ILD + Sbjct: 9 VWQIVEPITEELKLELVDVEYVKEGAHWYLRVYIDKD-GGVDIDDCASVSHQLSNILDSK 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 N+I Y LEVSSPGI+RP+ ++ D+ ++ G +V Sbjct: 68 NLIPQAYMLEVSSPGIERPLSKREDYDKYIGKLV 101 >gi|27362892|gb|AAN86998.1| YhbC-like protein [Pectobacterium carotovorum subsp. carotovorum] Length = 191 Score = 67.8 bits (164), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 66/111 (59%), Gaps = 1/111 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I + + + V I + + L+I+++ +DG +T+ DC ++S +S +LDVE+ Sbjct: 49 LTEMISAPVAALGYELVGIEFIRSRQSTLRIYIDSEDG-ITVDDCADVSHQVSAVLDVED 107 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I Y LEVSSPG++RP+ + +L + G V + ++ +++K +G I Sbjct: 108 PITVAYNLEVSSPGLERPLFTAAHYLHFVGEEVTVVLRMAVQNRRKWLGVI 158 >gi|323162864|gb|EFZ48699.1| hypothetical protein ECE128010_0824 [Escherichia coli E128010] Length = 150 Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 64/111 (57%), Gaps = 1/111 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I +E + F V I + + L+I+++ +DG + + DC ++S +S +LDVE+ Sbjct: 8 LTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVED 66 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I Y LEVSSPG+DRP+ + R+ G V + ++ +++K G I Sbjct: 67 PITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKCQGVI 117 >gi|308189111|ref|YP_003933242.1| UPF0090 protein yhbC [Pantoea vagans C9-1] gi|308059621|gb|ADO11793.1| UPF0090 protein yhbC [Pantoea vagans C9-1] Length = 150 Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 67/115 (58%), Gaps = 1/115 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ ++ +E + + V I + + +L+I+++ +DG + + DC ++S +S ++ Sbjct: 4 LEQKLTELVSAPVEALGYELVGIEFVRSRTSILRIYIDSEDG-INVDDCADVSHQVSAVM 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 DVE+ I Y LEVSSPG+DRP+ + R+ G V+ + ++ +++K G I Sbjct: 63 DVEDPITVPYNLEVSSPGLDRPLFTAEHYTRFMGEEVSLVLRMAVQNRRKWQGTI 117 >gi|18310672|ref|NP_562606.1| hypothetical protein CPE1690 [Clostridium perfringens str. 13] gi|110799296|ref|YP_696377.1| hypothetical protein CPF_1944 [Clostridium perfringens ATCC 13124] gi|168211422|ref|ZP_02637047.1| conserved hypothetical protein [Clostridium perfringens B str. ATCC 3626] gi|168214477|ref|ZP_02640102.1| conserved hypothetical protein [Clostridium perfringens CPE str. F4969] gi|168216977|ref|ZP_02642602.1| conserved hypothetical protein [Clostridium perfringens NCTC 8239] gi|182626379|ref|ZP_02954133.1| conserved hypothetical protein [Clostridium perfringens D str. JGS1721] gi|34223128|sp|Q8XJR4|RIMP_CLOPE RecName: Full=Ribosome maturation factor rimP gi|122958819|sp|Q0TPR3|RIMP_CLOP1 RecName: Full=Ribosome maturation factor rimP gi|18145353|dbj|BAB81396.1| conserved hypothetical protein [Clostridium perfringens str. 13] gi|110673943|gb|ABG82930.1| conserved hypothetical protein [Clostridium perfringens ATCC 13124] gi|170710586|gb|EDT22768.1| conserved hypothetical protein [Clostridium perfringens B str. ATCC 3626] gi|170714055|gb|EDT26237.1| conserved hypothetical protein [Clostridium perfringens CPE str. F4969] gi|177908330|gb|EDT70878.1| conserved hypothetical protein [Clostridium perfringens D str. JGS1721] gi|182380875|gb|EDT78354.1| conserved hypothetical protein [Clostridium perfringens NCTC 8239] Length = 154 Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 72/129 (55%), Gaps = 1/129 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L D+ ++ P+++E + I ++E N L++++E+ + ++LRDCE +S+A+S + Sbjct: 6 LVADLEALCAPIVKEKGYDLYHIEYVKENNEYYLRLYIEKPEERISLRDCEIVSRALSDM 65 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD+E+ I+ Y LEVSSPG++R + F R+ G V S ++ + G + Sbjct: 66 LDIEDPIKDAYFLEVSSPGLNRRLHSDEHFNRFIGKEVFVGFKSSLSGRKNVKGILKDVQ 125 Query: 140 ETGFFLEKE 148 E +E E Sbjct: 126 ENEIIVECE 134 >gi|71901434|ref|ZP_00683524.1| Protein of unknown function DUF150 [Xylella fastidiosa Ann-1] gi|71728805|gb|EAO30946.1| Protein of unknown function DUF150 [Xylella fastidiosa Ann-1] Length = 216 Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 86/156 (55%), Gaps = 12/156 (7%) Query: 24 DISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVE-----RDDGNMTLRDCEELSQAIS 77 +I +++ P +E + F + LL +L+++++ + + +++ DCE +S+ +S Sbjct: 24 EIVNLLAPKVEMLGFDLLGAEYLLVPSGAILRLYIDIPFAMQPECMVSIDDCERVSREVS 83 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD+E I G+Y LEVSSPG+DR + F R + H+V + L ++L GKI+ Sbjct: 84 AYLDLEEPISGNYTLEVSSPGLDRRLFTLEQFARHHNHLVKVGLKLQQHGSRRLQGKIVR 143 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + G F+ +N +++A+ F+++ AR++ Sbjct: 144 VEQVGGFVVLL------VNGVELAVDFNNIDKARIV 173 >gi|323141192|ref|ZP_08076093.1| hypothetical protein HMPREF9443_00865 [Phascolarctobacterium sp. YIT 12067] gi|322414335|gb|EFY05153.1| hypothetical protein HMPREF9443_00865 [Phascolarctobacterium sp. YIT 12067] Length = 187 Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 56/85 (65%), Gaps = 1/85 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 I++++ P++++ V + + EK+ L+IF+++ G + + DC+ +S+ ++ ILD E+ Sbjct: 39 ITAMVDPLLQDTGLTLVDVEYVREKDWYLRIFLDKP-GGVEIDDCQMVSEKLTEILDAED 97 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDF 109 I Y LEVSSPGIDRP+ + DF Sbjct: 98 PIPDKYFLEVSSPGIDRPLKKDKDF 122 >gi|91212592|ref|YP_542578.1| hypothetical protein UTI89_C3601 [Escherichia coli UTI89] gi|170680823|ref|YP_001745444.1| hypothetical protein EcSMS35_3466 [Escherichia coli SMS-3-5] gi|187775784|ref|ZP_02798170.2| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196] gi|188024835|ref|ZP_02774257.2| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113] gi|189010333|ref|ZP_02806320.2| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076] gi|189401946|ref|ZP_02779158.2| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401] gi|189403296|ref|ZP_02794595.2| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486] gi|189404085|ref|ZP_02787144.2| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501] gi|189404788|ref|ZP_02811062.2| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869] gi|189405548|ref|ZP_02822778.2| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508] gi|191168030|ref|ZP_03029830.1| conserved hypothetical protein [Escherichia coli B7A] gi|193062091|ref|ZP_03043187.1| conserved hypothetical protein [Escherichia coli E22] gi|193067407|ref|ZP_03048375.1| conserved hypothetical protein [Escherichia coli E110019] gi|194430231|ref|ZP_03062729.1| conserved hypothetical protein [Escherichia coli B171] gi|194438776|ref|ZP_03070862.1| conserved hypothetical protein [Escherichia coli 101-1] gi|208808473|ref|ZP_03250810.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206] gi|208812353|ref|ZP_03253682.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045] gi|208820794|ref|ZP_03261114.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042] gi|209400717|ref|YP_002272641.1| hypothetical protein ECH74115_4491 [Escherichia coli O157:H7 str. EC4115] gi|217327331|ref|ZP_03443414.1| conserved hypothetical protein [Escherichia coli O157:H7 str. TW14588] gi|237706077|ref|ZP_04536558.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|293406781|ref|ZP_06650707.1| hypothetical protein ECGG_02091 [Escherichia coli FVEC1412] gi|298382522|ref|ZP_06992119.1| hypothetical protein ECFG_02283 [Escherichia coli FVEC1302] gi|331643870|ref|ZP_08345001.1| putative cytoplasmic protein [Escherichia coli H736] gi|331648971|ref|ZP_08350059.1| putative cytoplasmic protein [Escherichia coli M605] gi|331654776|ref|ZP_08355776.1| putative cytoplasmic protein [Escherichia coli M718] gi|331674708|ref|ZP_08375467.1| putative cytoplasmic protein [Escherichia coli TA280] gi|331679251|ref|ZP_08379923.1| putative cytoplasmic protein [Escherichia coli H591] gi|332279999|ref|ZP_08392412.1| conserved hypothetical protein [Shigella sp. D9] gi|26110182|gb|AAN82368.1|AE016767_128 Hypothetical protein yhbC [Escherichia coli CFT073] gi|91074166|gb|ABE09047.1| conserved hypothetical protein [Escherichia coli UTI89] gi|170518541|gb|ACB16719.1| conserved hypothetical protein [Escherichia coli SMS-3-5] gi|187770840|gb|EDU34684.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196] gi|188016402|gb|EDU54524.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113] gi|189001090|gb|EDU70076.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076] gi|189358736|gb|EDU77155.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401] gi|189361416|gb|EDU79835.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486] gi|189367607|gb|EDU86023.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501] gi|189374130|gb|EDU92546.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869] gi|189379725|gb|EDU98141.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508] gi|190901899|gb|EDV61648.1| conserved hypothetical protein [Escherichia coli B7A] gi|192932311|gb|EDV84909.1| conserved hypothetical protein [Escherichia coli E22] gi|192959364|gb|EDV89799.1| conserved hypothetical protein [Escherichia coli E110019] gi|194411732|gb|EDX28056.1| conserved hypothetical protein [Escherichia coli B171] gi|194422248|gb|EDX38249.1| conserved hypothetical protein [Escherichia coli 101-1] gi|208728274|gb|EDZ77875.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206] gi|208733630|gb|EDZ82317.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045] gi|208740917|gb|EDZ88599.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042] gi|209162117|gb|ACI39550.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4115] gi|217319698|gb|EEC28123.1| conserved hypothetical protein [Escherichia coli O157:H7 str. TW14588] gi|226899117|gb|EEH85376.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|291426787|gb|EFE99819.1| hypothetical protein ECGG_02091 [Escherichia coli FVEC1412] gi|298277662|gb|EFI19178.1| hypothetical protein ECFG_02283 [Escherichia coli FVEC1302] gi|323376934|gb|ADX49202.1| protein of unknown function DUF150 [Escherichia coli KO11] gi|331037341|gb|EGI09565.1| putative cytoplasmic protein [Escherichia coli H736] gi|331042718|gb|EGI14860.1| putative cytoplasmic protein [Escherichia coli M605] gi|331048158|gb|EGI20235.1| putative cytoplasmic protein [Escherichia coli M718] gi|331068147|gb|EGI39543.1| putative cytoplasmic protein [Escherichia coli TA280] gi|331073316|gb|EGI44639.1| putative cytoplasmic protein [Escherichia coli H591] gi|332102351|gb|EGJ05697.1| conserved hypothetical protein [Shigella sp. D9] Length = 154 Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 64/111 (57%), Gaps = 1/111 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I +E + F V I + + L+I+++ +DG + + DC ++S +S +LDVE+ Sbjct: 12 LTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVED 70 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I Y LEVSSPG+DRP+ + R+ G V + ++ +++K G I Sbjct: 71 PITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 121 >gi|28198120|ref|NP_778434.1| hypothetical protein PD0192 [Xylella fastidiosa Temecula1] gi|28056180|gb|AAO28083.1| conserved hypothetical protein [Xylella fastidiosa Temecula1] Length = 216 Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 86/156 (55%), Gaps = 12/156 (7%) Query: 24 DISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVE-----RDDGNMTLRDCEELSQAIS 77 +I +++ P +E + F + LL +L+++++ + + +++ DCE +S+ +S Sbjct: 24 EIVNLLAPKVEMLGFDLLGAEYLLVPSGAILRLYIDIPFAMQPECMVSIDDCERVSREVS 83 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD+E I G+Y LEVSSPG+DR + F R + H+V + L ++L GKI+ Sbjct: 84 AYLDLEEPISGNYTLEVSSPGLDRRLFTLEQFARHHNHLVKVGLKLQQHGSRRLQGKIVR 143 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + G F+ +N +++A+ F+++ AR++ Sbjct: 144 VEQVGGFVVLL------VNGVELAVDFNNIDKARIV 173 >gi|148244224|ref|YP_001218918.1| hypothetical protein COSY_0057 [Candidatus Vesicomyosocius okutanii HA] gi|166919105|sp|A5CXX4|RIMP_VESOH RecName: Full=Ribosome maturation factor rimP gi|146326051|dbj|BAF61194.1| conserved hypothetical protein [Candidatus Vesicomyosocius okutanii HA] Length = 153 Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 65/117 (55%), Gaps = 2/117 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I+ +I+PVIE M + + I + K +L+IF++ + ++++ DCE +S+ +S I D+E Sbjct: 8 ITHLIKPVIEGMGYELLGIEYVASGKYSILRIFIDTNK-SISVNDCEIVSRQLSSIFDIE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 I G Y LEVSSPGI+RP+ K + + G V + + G I SE Sbjct: 67 EPISGQYNLEVSSPGIERPLFHKGHYQCFLGFNVKLHMFRPISGQSNFFGVIGSVSE 123 >gi|67923758|ref|ZP_00517222.1| Protein of unknown function DUF150 [Crocosphaera watsonii WH 8501] gi|67854385|gb|EAM49680.1| Protein of unknown function DUF150 [Crocosphaera watsonii WH 8501] Length = 151 Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 1/132 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 L I + P+ +EM V + K +L++ + G+ +L DCE++S+A+ I Sbjct: 5 LIPQIIDLATPIAQEMGLEIVDVVFQTNKRPPVLRVDIRNTIGDTSLNDCEKVSRALESI 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD I+ G Y LE+SSPGI R + + DF+ + G V DK++ G++ G Sbjct: 65 LDERAIMPGAYVLEISSPGISRYLSSERDFIAFKGFEVKVTTNPPYMDKKEWQGRLQGRD 124 Query: 140 ETGFFLEKEKRG 151 E +L ++ R Sbjct: 125 EKAVYLNRKGRA 136 >gi|299534744|ref|ZP_07048074.1| hypothetical protein BFZC1_01897 [Lysinibacillus fusiformis ZC1] gi|298729832|gb|EFI70377.1| hypothetical protein BFZC1_01897 [Lysinibacillus fusiformis ZC1] Length = 158 Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 38/151 (25%), Positives = 81/151 (53%), Gaps = 5/151 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I + +P+++E++ V I ++E +N L+++V+ +G + + C ++S+ +S +LD + Sbjct: 8 IEELAKPIVDELNLELVDIEFVKEGRNWFLRVYVDTPEGGIDIDQCAQVSERLSLLLDEK 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I +Y LEVSSPG +RP+ + +DF++ G + + D ++ G + E Sbjct: 68 DPITQNYYLEVSSPGAERPLKKDTDFVKAVGKFIYVKTYEPIKDMKEFQGYLTSYDEHTL 127 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + K + + I + + ARL + Sbjct: 128 VMEVRIKTRK----ITVTIEQEKIALARLAI 154 >gi|229593531|ref|YP_001456060.2| hypothetical protein CKO_04571 [Citrobacter koseri ATCC BAA-895] Length = 150 Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 64/111 (57%), Gaps = 1/111 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I +E + + V I + + L+I+++ +DG + + DC ++S +S +LDVE+ Sbjct: 8 LTEMITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVED 66 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I Y LEVSSPG+DRPM + R+ G V + ++ +++K G I Sbjct: 67 PITVAYNLEVSSPGLDRPMFTAEHYARFLGEEVTLVLRMAVQNRRKWQGVI 117 >gi|89109935|ref|AP_003715.1| hypothetical protein [Escherichia coli str. K-12 substr. W3110] gi|110643411|ref|YP_671141.1| hypothetical protein ECP_3258 [Escherichia coli 536] gi|110807039|ref|YP_690559.1| hypothetical protein SFV_3200 [Shigella flexneri 5 str. 8401] gi|157159426|ref|YP_001464647.1| hypothetical protein EcE24377A_3655 [Escherichia coli E24377A] gi|157162655|ref|YP_001459973.1| hypothetical protein EcHS_A3362 [Escherichia coli HS] gi|161367518|ref|NP_289746.2| hypothetical protein Z4531 [Escherichia coli O157:H7 EDL933] gi|161485816|ref|NP_708971.3| hypothetical protein SF3211 [Shigella flexneri 2a str. 301] gi|161486109|ref|NP_755794.2| hypothetical protein c3927 [Escherichia coli CFT073] gi|161486428|ref|NP_838681.2| hypothetical protein S3428 [Shigella flexneri 2a str. 2457T] gi|161950037|ref|YP_404833.2| hypothetical protein SDY_3349 [Shigella dysenteriae Sd197] gi|161986442|ref|YP_312126.2| hypothetical protein SSON_3316 [Shigella sonnei Ss046] gi|162139721|ref|NP_312078.3| hypothetical protein ECs4051 [Escherichia coli O157:H7 str. Sakai] gi|170082707|ref|YP_001732027.1| hypothetical protein ECDH10B_3344 [Escherichia coli str. K-12 substr. DH10B] gi|187733192|ref|YP_001881913.1| hypothetical protein SbBS512_E3601 [Shigella boydii CDC 3083-94] gi|188492035|ref|ZP_02999305.1| conserved hypothetical protein [Escherichia coli 53638] gi|195938390|ref|ZP_03083772.1| hypothetical protein EscherichcoliO157_18476 [Escherichia coli O157:H7 str. EC4024] gi|218550455|ref|YP_002384246.1| hypothetical protein EFER_3149 [Escherichia fergusonii ATCC 35469] gi|218555742|ref|YP_002388655.1| hypothetical protein ECIAI1_3320 [Escherichia coli IAI1] gi|218560242|ref|YP_002393155.1| hypothetical protein ECS88_3554 [Escherichia coli S88] gi|218691462|ref|YP_002399674.1| hypothetical protein ECED1_3830 [Escherichia coli ED1a] gi|218696877|ref|YP_002404544.1| hypothetical protein EC55989_3590 [Escherichia coli 55989] gi|218701941|ref|YP_002409570.1| hypothetical protein ECIAI39_3667 [Escherichia coli IAI39] gi|218706792|ref|YP_002414311.1| hypothetical protein ECUMN_3652 [Escherichia coli UMN026] gi|226524751|ref|NP_417639.6| ribosome maturation factor for 30S subunits [Escherichia coli str. K-12 substr. MG1655] gi|229597230|ref|YP_001723532.2| hypothetical protein EcolC_0528 [Escherichia coli ATCC 8739] gi|229775958|ref|YP_858789.2| hypothetical protein APECO1_3260 [Escherichia coli APEC O1] gi|254163114|ref|YP_003046222.1| hypothetical protein ECB_03037 [Escherichia coli B str. REL606] gi|254795121|ref|YP_003079958.1| hypothetical protein ECSP_4145 [Escherichia coli O157:H7 str. TW14359] gi|256018910|ref|ZP_05432775.1| hypothetical protein ShiD9_08333 [Shigella sp. D9] gi|256024254|ref|ZP_05438119.1| hypothetical protein E4_12823 [Escherichia sp. 4_1_40B] gi|307313123|ref|ZP_07592749.1| protein of unknown function DUF150 [Escherichia coli W] gi|312968491|ref|ZP_07782700.1| conserved hypothetical protein [Escherichia coli 2362-75] gi|123342478|sp|Q0T0B1|RIMP_SHIF8 RecName: Full=Ribosome maturation factor rimP gi|123343572|sp|Q0TCT9|RIMP_ECOL5 RecName: Full=Ribosome maturation factor rimP gi|259585755|sp|A7ZS68|RIMP_ECO24 RecName: Full=Ribosome maturation factor rimP gi|259585756|sp|B7NKN9|RIMP_ECO7I RecName: Full=Ribosome maturation factor rimP gi|259585757|sp|B7N0V5|RIMP_ECO81 RecName: Full=Ribosome maturation factor rimP gi|259585758|sp|B7M078|RIMP_ECO8A RecName: Full=Ribosome maturation factor rimP gi|259585760|sp|B1XGY2|RIMP_ECODH RecName: Full=Ribosome maturation factor rimP gi|259585761|sp|A8A4Y6|RIMP_ECOHS RecName: Full=Ribosome maturation factor rimP gi|259585764|sp|B7MB91|RIMP_ECO45 RecName: Full=Ribosome maturation factor rimP gi|259585765|sp|B7LHN5|RIMP_ECO55 RecName: Full=Ribosome maturation factor rimP gi|259585766|sp|B7NDF6|RIMP_ECOLU RecName: Full=Ribosome maturation factor rimP gi|259585770|sp|B7LR39|RIMP_ESCF3 RecName: Full=Ribosome maturation factor rimP gi|259586197|sp|B2U205|RIMP_SHIB3 RecName: Full=Ribosome maturation factor rimP gi|269849638|sp|P0A8A8|RIMP_ECOLI RecName: Full=Ribosome maturation factor rimP gi|85675966|dbj|BAE77216.1| conserved hypothetical protein [Escherichia coli str. K12 substr. W3110] gi|110345003|gb|ABG71240.1| putative cytoplasmic protein [Escherichia coli 536] gi|110616587|gb|ABF05254.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] gi|157068335|gb|ABV07590.1| conserved hypothetical protein [Escherichia coli HS] gi|157081456|gb|ABV21164.1| conserved hypothetical protein [Escherichia coli E24377A] gi|169890542|gb|ACB04249.1| conserved protein [Escherichia coli str. K-12 substr. DH10B] gi|187430184|gb|ACD09458.1| conserved hypothetical protein [Shigella boydii CDC 3083-94] gi|188487234|gb|EDU62337.1| conserved hypothetical protein [Escherichia coli 53638] gi|218353609|emb|CAU99801.1| conserved hypothetical protein [Escherichia coli 55989] gi|218357996|emb|CAQ90642.1| conserved hypothetical protein [Escherichia fergusonii ATCC 35469] gi|218362510|emb|CAR00134.1| conserved hypothetical protein [Escherichia coli IAI1] gi|218367011|emb|CAR04782.1| conserved hypothetical protein [Escherichia coli S88] gi|218371927|emb|CAR19783.1| conserved hypothetical protein [Escherichia coli IAI39] gi|218429026|emb|CAR09973.2| conserved hypothetical protein [Escherichia coli ED1a] gi|218433889|emb|CAR14806.1| conserved hypothetical protein [Escherichia coli UMN026] gi|226510978|gb|AAC76204.4| ribosome maturation factor for 30S subunits [Escherichia coli str. K-12 substr. MG1655] gi|242378715|emb|CAQ33505.1| ribosome maturation protein [Escherichia coli BL21(DE3)] gi|253975015|gb|ACT40686.1| hypothetical protein ECB_03037 [Escherichia coli B str. REL606] gi|253979171|gb|ACT44841.1| hypothetical protein ECD_03037 [Escherichia coli BL21(DE3)] gi|254594521|gb|ACT73882.1| conserved protein [Escherichia coli O157:H7 str. TW14359] gi|294489705|gb|ADE88461.1| conserved hypothetical protein [Escherichia coli IHE3034] gi|306907034|gb|EFN37542.1| protein of unknown function DUF150 [Escherichia coli W] gi|307555266|gb|ADN48041.1| putative cytoplasmic protein [Escherichia coli ABU 83972] gi|309703598|emb|CBJ02938.1| conserved hypothetical protein [Escherichia coli ETEC H10407] gi|312286709|gb|EFR14620.1| conserved hypothetical protein [Escherichia coli 2362-75] gi|313648588|gb|EFS13030.1| hypothetical protein SF2457T_3054 [Shigella flexneri 2a str. 2457T] gi|315137758|dbj|BAJ44917.1| conserved protein [Escherichia coli DH1] gi|315617253|gb|EFU97862.1| conserved hypothetical protein [Escherichia coli 3431] gi|320181446|gb|EFW56364.1| hypothetical protein SGB_01316 [Shigella boydii ATCC 9905] gi|320194656|gb|EFW69286.1| hypothetical protein EcoM_03098 [Escherichia coli WV_060327] gi|323165128|gb|EFZ50918.1| hypothetical protein SS53G_4591 [Shigella sonnei 53G] gi|323189207|gb|EFZ74491.1| hypothetical protein ECRN5871_2808 [Escherichia coli RN587/1] gi|327255186|gb|EGE66786.1| hypothetical protein ECSTEC7V_5219 [Escherichia coli STEC_7v] gi|332086098|gb|EGI91260.1| hypothetical protein SB521682_3815 [Shigella boydii 5216-82] gi|332752330|gb|EGJ82720.1| hypothetical protein SF434370_3403 [Shigella flexneri 4343-70] gi|332752857|gb|EGJ83242.1| hypothetical protein SFK671_3816 [Shigella flexneri K-671] gi|333014971|gb|EGK34315.1| hypothetical protein SFK227_3827 [Shigella flexneri K-227] Length = 150 Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 64/111 (57%), Gaps = 1/111 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I +E + F V I + + L+I+++ +DG + + DC ++S +S +LDVE+ Sbjct: 8 LTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVED 66 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I Y LEVSSPG+DRP+ + R+ G V + ++ +++K G I Sbjct: 67 PITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 117 >gi|219669698|ref|YP_002460133.1| hypothetical protein Dhaf_3680 [Desulfitobacterium hafniense DCB-2] gi|254800077|sp|B8FR10|RIMP_DESHD RecName: Full=Ribosome maturation factor rimP gi|219539958|gb|ACL21697.1| protein of unknown function DUF150 [Desulfitobacterium hafniense DCB-2] Length = 152 Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 68/126 (53%), Gaps = 2/126 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++I PVI E V + ++E + L+I+++++ G + + DC +S +S +LD Sbjct: 9 VEAIIAPVITEQGLELVDVEYVKEGAHWYLRIYIDKE-GGVDIDDCTNVSHLVSEVLDKH 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I Y LEVSSPG++RP+ + DF R+ G +V ++ G ++G E Sbjct: 68 DPIAQAYMLEVSSPGLERPLKKDEDFERFTGKLVRVLTKEVYQGYKEFTGYLVGLIEDDI 127 Query: 144 FLEKEK 149 LE EK Sbjct: 128 VLEYEK 133 >gi|77165587|ref|YP_344112.1| hypothetical protein Noc_2122 [Nitrosococcus oceani ATCC 19707] gi|254434762|ref|ZP_05048270.1| conserved hypothetical protein [Nitrosococcus oceani AFC27] gi|91208399|sp|Q3J9B4|RIMP_NITOC RecName: Full=Ribosome maturation factor rimP gi|76883901|gb|ABA58582.1| Protein of unknown function DUF150 [Nitrosococcus oceani ATCC 19707] gi|207091095|gb|EDZ68366.1| conserved hypothetical protein [Nitrosococcus oceani AFC27] Length = 151 Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 38/102 (37%), Positives = 60/102 (58%), Gaps = 5/102 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE--KNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 IS +++PV+ + + V + L K LL+I+++ G +T+ DCE S IS +LDV Sbjct: 7 ISELVEPVVAALGYELVGVERLSSVGKGALLRIYIDTPSG-ITIDDCERASHQISALLDV 65 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS 124 E ++ Y LE+SSPG++RP+ + F R+ G V I LS Sbjct: 66 EELMASAYTLEISSPGLNRPLFTEEHFKRFTG--VEASITLS 105 >gi|30021906|ref|NP_833537.1| hypothetical protein BC3815 [Bacillus cereus ATCC 14579] gi|206972652|ref|ZP_03233593.1| conserved hypothetical protein [Bacillus cereus AH1134] gi|218235854|ref|YP_002368618.1| hypothetical protein BCB4264_A3915 [Bacillus cereus B4264] gi|296504312|ref|YP_003666012.1| hypothetical protein BMB171_C3482 [Bacillus thuringiensis BMB171] gi|34222809|sp|Q812X5|RIMP_BACCR RecName: Full=Ribosome maturation factor rimP gi|226706108|sp|B7HDU0|RIMP_BACC4 RecName: Full=Ribosome maturation factor rimP gi|29897462|gb|AAP10738.1| hypothetical Cytosolic Protein [Bacillus cereus ATCC 14579] gi|206732409|gb|EDZ49590.1| conserved hypothetical protein [Bacillus cereus AH1134] gi|218163811|gb|ACK63803.1| conserved hypothetical protein [Bacillus cereus B4264] gi|296325364|gb|ADH08292.1| hypothetical protein BMB171_C3482 [Bacillus thuringiensis BMB171] Length = 156 Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 85/155 (54%), Gaps = 12/155 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + + QP++EE++ V + ++E ++ L++F++ + G + + +C +S+ +S LD E Sbjct: 9 VEAFAQPIVEELNLELVDVEYVKEGQDWFLRVFIDSEKG-VDIEECGAVSERLSEALDKE 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM---GTSE 140 + I Y L+VSSPG +RP+ ++ DF + G VA + ++ GK++ GT+ Sbjct: 68 DPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMFEGKLLSYDGTTI 127 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 T K ++ E I IS D + +ARL VT Sbjct: 128 TLLLTIKTRKKE-------IQISMDKVANARLAVT 155 >gi|74316717|ref|YP_314457.1| hypothetical protein Tbd_0699 [Thiobacillus denitrificans ATCC 25259] gi|74056212|gb|AAZ96652.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC 25259] Length = 161 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 73/115 (63%), Gaps = 7/115 (6%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDV 82 D+ + ++PV+ + + ++ +LE LL+IF+++ G +T+ DC +S ++ + V Sbjct: 22 DLPARLEPVLAGLGY---ELVMLERAGRGLLRIFIDKP-GGVTIDDCVAVSNHLTHLFTV 77 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ENI + RLEVSSPG+DRP+V+ D+ R+ G V ++ + ++++L G+++G Sbjct: 78 ENI--DYDRLEVSSPGLDRPLVKPQDYARFAGEQVTLKLRVPMDNRRRLSGQLLG 130 >gi|259586209|sp|A3QGU7|RIMP_SHELP RecName: Full=Ribosome maturation factor rimP Length = 151 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 68/125 (54%), Gaps = 9/125 (7%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSD 108 K+ +L+++++ ++G + + DC ++S+ IS +LDVE+ I Y LEVSSPG+DRP+ Sbjct: 33 KHSVLRVYIDNENG-IFIDDCADVSRQISAVLDVEDPISTEYTLEVSSPGVDRPLFTAEQ 91 Query: 109 FLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLL 168 + R+ G V ++ + + L G + G L D NEL IA+ D++ Sbjct: 92 YARYLGETVKVQLTMPVAGSRNLKGTVAGVEGQMLTL------TVDGNELIIAL--DNIR 143 Query: 169 SARLI 173 LI Sbjct: 144 KGNLI 148 >gi|242240751|ref|YP_002988932.1| hypothetical protein Dd703_3348 [Dickeya dadantii Ech703] gi|242132808|gb|ACS87110.1| protein of unknown function DUF150 [Dickeya dadantii Ech703] Length = 140 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 64/108 (59%), Gaps = 1/108 (0%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I +E + + V I + + L+I+++ +DG +T+ DC ++S +S ++DVE+ I Sbjct: 1 MISAPVEALGYELVGIEFIRGRQSTLRIYIDSEDG-ITVDDCADVSHQVSAVMDVEDPIS 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 Y LEVSSPG+DRP+ + R+ G V+ + ++ +++K G I Sbjct: 60 VAYNLEVSSPGVDRPLFTAEHYERFTGEEVSLVLRMAVQNRRKWQGII 107 >gi|284925431|gb|ADC27783.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni IA3902] Length = 140 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 68/123 (55%), Gaps = 11/123 (8%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 + +I+V+++ G + L DC LS+ +SPI DVE+ + G Y LEVSSPG++R + + F + Sbjct: 27 IYRIYVQKE-GGVNLDDCARLSEILSPIFDVESPVNGEYFLEVSSPGLERKLSKIEHFAK 85 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 G +V +++ +K+K KI+ + LE + EK I+F+ + AR Sbjct: 86 SIGELVK----ITTNEKEKFEAKIIAVDDENITLENLENKEK------TTINFNDIKKAR 135 Query: 172 LIV 174 V Sbjct: 136 TFV 138 >gi|83644099|ref|YP_432534.1| hypothetical protein HCH_01237 [Hahella chejuensis KCTC 2396] gi|83632142|gb|ABC28109.1| uncharacterized protein conserved in bacteria [Hahella chejuensis KCTC 2396] Length = 173 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 15 IFGDMGLA--GDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEE 71 + GD LA D+ +++PV+E M + + + K LL+I+++++ G + + DCE+ Sbjct: 18 LIGDNLLARKDDLYQLLKPVVEGMGCDFWGMDYIAQGKRSLLRIYIDKESG-VLVDDCEK 76 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+ IS ILDVE+ I+G Y LEVSSPG DRP+ + + G ++ + ++K Sbjct: 77 VSRQISAILDVEDPIKGEYTLEVSSPGWDRPLFNVEQYKAYIGSIIEVRLQAPFNGRRKF 136 Query: 132 IG 133 G Sbjct: 137 KG 138 >gi|304396346|ref|ZP_07378227.1| protein of unknown function DUF150 [Pantoea sp. aB] gi|304355855|gb|EFM20221.1| protein of unknown function DUF150 [Pantoea sp. aB] Length = 143 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 66/111 (59%), Gaps = 1/111 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ ++ +E + + V I + + +L+I+++ +DG + + DC ++S +S ++DVE+ Sbjct: 1 MTELVSAPVEALGYELVGIEFVRSRTSILRIYIDSEDG-INVDDCADVSHQVSAVMDVED 59 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I Y LEVSSPG+DRP+ + R+ G V+ + ++ +++K G I Sbjct: 60 PITVPYNLEVSSPGLDRPLFTAEHYTRFMGEEVSLVLRMAVQNRRKWQGTI 110 >gi|259907040|ref|YP_002647396.1| YhbC-like protein [Erwinia pyrifoliae Ep1/96] gi|292900767|ref|YP_003540136.1| hypothetical protein EAM_3073 [Erwinia amylovora ATCC 49946] gi|224962662|emb|CAX54117.1| YhbC-like protein [Erwinia pyrifoliae Ep1/96] gi|291200615|emb|CBJ47747.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946] gi|310766252|gb|ADP11202.1| YhbC-like protein [Erwinia sp. Ejp617] Length = 152 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 69/120 (57%), Gaps = 4/120 (3%) Query: 19 MGLAG---DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 MGL+ ++ +I +E + + V I + + L+I+++ +DG + + DC ++S Sbjct: 1 MGLSTLEQKLTELISAPVEALGYELVGIEFVRGRTSTLRIYIDSEDG-INVDDCADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S ++DVE+ I Y LEVSSPG+DRPM + R+ G V+ + ++ +++K G I Sbjct: 60 VSAVMDVEDPITVAYNLEVSSPGLDRPMFTAEHYDRFTGEEVSLVLRMAVQNRRKWQGII 119 >gi|154706898|ref|YP_001423971.1| hypothetical protein CBUD_0561 [Coxiella burnetii Dugway 5J108-111] gi|189040247|sp|A9KBL9|RIMP_COXBN RecName: Full=Ribosome maturation factor rimP gi|154356184|gb|ABS77646.1| hypothetical cytosolic protein [Coxiella burnetii Dugway 5J108-111] Length = 153 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 58/98 (59%), Gaps = 2/98 (2%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M A + +I P +E + F V L +LQ+FV++ G + L +C ++S+ IS Sbjct: 1 MSQARTLHRLIAPAVEALGFELVGCELFRRGATRILQVFVDKP-GGIGLDECAKVSRQIS 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGH 115 +LDVE+ I G Y LEVSSPG++RP+ + + R+ G+ Sbjct: 60 AVLDVEDPIRGRYTLEVSSPGLERPLYTANHYRRFIGN 97 >gi|297580767|ref|ZP_06942693.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|297535183|gb|EFH74018.1| conserved hypothetical protein [Vibrio cholerae RC385] Length = 151 Score = 67.4 bits (163), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 59/83 (71%), Gaps = 1/83 (1%) Query: 53 LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRW 112 L+IF++ ++G +T+ DC E+S+ +S +LDVE+ I Y LEVSSPG+++P+ + + + ++ Sbjct: 37 LRIFIDHENG-ITVEDCAEVSRQVSAVLDVEDPISVVYNLEVSSPGLEKPLFKAAHYEQF 95 Query: 113 NGHVVACEIVLSSGDKQKLIGKI 135 GH V+ + ++ G+++K G I Sbjct: 96 IGHEVSIVLKMAVGNRRKWKGVI 118 >gi|127513757|ref|YP_001094954.1| hypothetical protein Shew_2829 [Shewanella loihica PV-4] gi|126639052|gb|ABO24695.1| protein of unknown function DUF150 [Shewanella loihica PV-4] Length = 161 Score = 67.4 bits (163), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 68/125 (54%), Gaps = 9/125 (7%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSD 108 K+ +L+++++ ++G + + DC ++S+ IS +LDVE+ I Y LEVSSPG+DRP+ Sbjct: 43 KHSVLRVYIDNENG-IFIDDCADVSRQISAVLDVEDPISTEYTLEVSSPGVDRPLFTAEQ 101 Query: 109 FLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLL 168 + R+ G V ++ + + L G + G L D NEL IA+ D++ Sbjct: 102 YARYLGETVKVQLTMPVAGSRNLKGTVAGVEGQMLTL------TVDGNELIIAL--DNIR 153 Query: 169 SARLI 173 LI Sbjct: 154 KGNLI 158 >gi|315123740|ref|YP_004065744.1| YlxS [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315017462|gb|ADT65555.1| YlxS [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 140 Score = 67.4 bits (163), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 11/123 (8%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 + +I+V+++ G + L DC LS+ +SPI DVE + G Y LEVSSPG++R + R F + Sbjct: 27 IYRIYVQKE-GGVNLDDCARLSEILSPIFDVEPPVNGEYFLEVSSPGLERKLSRIEHFAK 85 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 G +V +++ +K+K KI+ + LE + EK I+F+ + AR Sbjct: 86 SIGELVK----ITTNEKEKFEAKIIAVDDENITLENLENKEK------TTINFNDIKKAR 135 Query: 172 LIV 174 + Sbjct: 136 TFI 138 >gi|182680748|ref|YP_001828908.1| hypothetical protein XfasM23_0177 [Xylella fastidiosa M23] gi|226695961|sp|B2I724|RIMP_XYLF2 RecName: Full=Ribosome maturation factor rimP gi|259016318|sp|Q87EV6|RIMP_XYLFT RecName: Full=Ribosome maturation factor rimP gi|182630858|gb|ACB91634.1| protein of unknown function DUF150 [Xylella fastidiosa M23] Length = 199 Score = 67.4 bits (163), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 86/156 (55%), Gaps = 12/156 (7%) Query: 24 DISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVE-----RDDGNMTLRDCEELSQAIS 77 +I +++ P +E + F + LL +L+++++ + + +++ DCE +S+ +S Sbjct: 7 EIVNLLAPKVEMLGFDLLGAEYLLVPSGAILRLYIDIPFAMQPECMVSIDDCERVSREVS 66 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD+E I G+Y LEVSSPG+DR + F R + H+V + L ++L GKI+ Sbjct: 67 AYLDLEEPISGNYTLEVSSPGLDRRLFTLEQFARHHNHLVKVGLKLQQHGSRRLQGKIVR 126 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + G F+ +N +++A+ F+++ AR++ Sbjct: 127 VEQVGGFVVLL------VNGVELAVDFNNIDKARIV 156 >gi|237808992|ref|YP_002893432.1| hypothetical protein Tola_2248 [Tolumonas auensis DSM 9187] gi|259645129|sp|C4L8X6|RIMP_TOLAT RecName: Full=Ribosome maturation factor rimP gi|237501253|gb|ACQ93846.1| protein of unknown function DUF150 [Tolumonas auensis DSM 9187] Length = 152 Score = 67.4 bits (163), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 55/87 (63%), Gaps = 1/87 (1%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSD 108 K+ L+++++ +G +++ DC E S +S +LDVE+ I Y LEVSSPG+DRP+++ Sbjct: 33 KHSTLRVYIDHANG-ISVDDCAEASHQVSALLDVEDPITTEYYLEVSSPGMDRPLLKPEH 91 Query: 109 FLRWNGHVVACEIVLSSGDKQKLIGKI 135 F R+ G V + ++ +++K G I Sbjct: 92 FARYIGQVATVTLRMAVNNRRKYKGTI 118 >gi|57237145|ref|YP_178157.1| hypothetical protein CJE0133 [Campylobacter jejuni RM1221] gi|218561819|ref|YP_002343598.1| hypothetical protein Cj0138 [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|34223082|sp|Q9PIY9|RIMP_CAMJE RecName: Full=Ribosome maturation factor rimP gi|81354202|sp|Q5HX28|RIMP_CAMJR RecName: Full=Ribosome maturation factor rimP gi|57165949|gb|AAW34728.1| conserved hypothetical protein [Campylobacter jejuni RM1221] gi|112359525|emb|CAL34309.1| conserved hypothetical protein Cj0138 [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315057578|gb|ADT71907.1| hypothetical protein CJS3_0137 [Campylobacter jejuni subsp. jejuni S3] gi|315926922|gb|EFV06284.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 140 Score = 67.4 bits (163), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 68/123 (55%), Gaps = 11/123 (8%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 + +I+V+++ G + L DC LS+ +SPI DVE+ + G Y LEVSSPG++R + + F + Sbjct: 27 IYRIYVQKE-GGVNLDDCARLSEILSPIFDVESPVNGEYFLEVSSPGLERKLSKIEHFAK 85 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 G +V +++ +K+K KI+ + LE + EK I+F+ + AR Sbjct: 86 SIGELVK----ITTNEKEKFEAKIIAVDDENITLENLENKEK------TTINFNDIKKAR 135 Query: 172 LIV 174 V Sbjct: 136 TFV 138 >gi|238019443|ref|ZP_04599869.1| hypothetical protein VEIDISOL_01312 [Veillonella dispar ATCC 17748] gi|237864142|gb|EEP65432.1| hypothetical protein VEIDISOL_01312 [Veillonella dispar ATCC 17748] Length = 170 Score = 67.4 bits (163), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 69/117 (58%), Gaps = 1/117 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 +SSV++ +I V + + E++ L++++++ G + L DC+ +S+ +S +LD ++ Sbjct: 28 VSSVVEGIIAGTEMELVDVDYVRERDWYLRVYLDKP-GGVDLDDCQLVSEKLSAVLDEKD 86 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 I +Y LEVSSPG+DR + + D +R+NG V ++ ++ G + G ++T Sbjct: 87 PITENYLLEVSSPGLDRVLKKDKDLVRYNGRDVDIQLFKPINGSKQFTGVLEGFTDT 143 >gi|271499172|ref|YP_003332197.1| hypothetical protein Dd586_0598 [Dickeya dadantii Ech586] gi|270342727|gb|ACZ75492.1| protein of unknown function DUF150 [Dickeya dadantii Ech586] Length = 152 Score = 67.4 bits (163), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 70/120 (58%), Gaps = 4/120 (3%) Query: 19 MGLAG---DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 MGL+ ++ +I +E + + V I + + L+I+++ +DG +T+ DC ++S Sbjct: 1 MGLSTLEQKLTEMISAPVEALGYELVGIEFIRGRQSTLRIYIDSEDG-ITVDDCADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LEVSSPG+DRP+ + + + G V+ + ++ +++K G I Sbjct: 60 VSAVLDVEDPISVAYNLEVSSPGLDRPLFTAAHYAHFVGEEVSLVLRMAVQNRRKWQGII 119 >gi|15892741|ref|NP_360455.1| hypothetical protein RC0818 [Rickettsia conorii str. Malish 7] gi|34222951|sp|Q92HF3|RIMP_RICCN RecName: Full=Ribosome maturation factor rimP gi|15619918|gb|AAL03356.1| unknown [Rickettsia conorii str. Malish 7] Length = 161 Score = 67.4 bits (163), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 87/160 (54%), Gaps = 9/160 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVER-DDGNMTLRDCEELSQAISPILDVE 83 I++VI+ + +M F V + +++I ++ + +++ DC + S+ IS ILDVE Sbjct: 8 IANVIEESLTDMGFELVLVKFKGVNPKVVEILIDSLNSEKISVEDCTKASRTISAILDVE 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 ++IE Y LEV+S G++RP+V+ ++ R+ V ++ K + GKI+ Sbjct: 68 DLIEAAYSLEVASSGLERPLVKFENYNRFLEREVKIKLKELLNGKTRYQGKIIKAENNKI 127 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 +L+ E E ++ I +D + +A L++T+E+ + L Sbjct: 128 YLKCE--------EQEVLIDYDLIKNANLVLTEEVFKKLL 159 >gi|307579212|gb|ADN63181.1| hypothetical protein XFLM_06240 [Xylella fastidiosa subsp. fastidiosa GB514] Length = 176 Score = 67.4 bits (163), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 86/156 (55%), Gaps = 12/156 (7%) Query: 24 DISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVE-----RDDGNMTLRDCEELSQAIS 77 +I +++ P +E + F + LL +L+++++ + + +++ DCE +S+ +S Sbjct: 7 EIVNLLAPKVEMLGFDLLGAEYLLVPSGAILRLYIDIPFAMQPECMVSIDDCERVSREVS 66 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD+E I G+Y LEVSSPG+DR + F R + H+V + L ++L GKI+ Sbjct: 67 AYLDLEEPISGNYTLEVSSPGLDRRLFTLEQFARHHNHLVKVGLKLQQHGSRRLQGKIVR 126 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + G F+ +N +++A+ F+++ AR++ Sbjct: 127 VEQVGGFVVLL------VNGVELAVDFNNIDKARIV 156 >gi|304437179|ref|ZP_07397140.1| protein of hypothetical function DUF150 [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369841|gb|EFM23505.1| protein of hypothetical function DUF150 [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 163 Score = 67.4 bits (163), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 70/122 (57%), Gaps = 10/122 (8%) Query: 25 ISSVIQPVIEEM---------SFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 +S+ I+ +EEM + V + ++E++ L++++++ G + + DC+ LS+ Sbjct: 15 MSAKIEERVEEMVRGLLTDSPAIELVDVEYVKERDYYLRVYIDKA-GGIDIDDCQRLSER 73 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 + ILD E++I Y LEVSSPG+DR + ++ DF+R +G VV + K++ G + Sbjct: 74 LEEILDREDVIPDAYTLEVSSPGLDRVLRKERDFVREHGRVVDVTLYAPFEGKKQWTGTL 133 Query: 136 MG 137 G Sbjct: 134 AG 135 >gi|52785643|ref|YP_091472.1| hypothetical protein BLi01884 [Bacillus licheniformis ATCC 14580] gi|52348145|gb|AAU40779.1| YlxS [Bacillus licheniformis ATCC 14580] Length = 166 Score = 67.4 bits (163), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 64/94 (68%), Gaps = 2/94 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 +S ++QP+++ + V I ++E ++ L++F++ DDG + + +C ++S+A+S LD Sbjct: 18 VSEMVQPILDNLQLELVDIEFVKEGQSWFLRVFIDSDDG-VDIEECAKVSEALSEKLDEA 76 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + I+ +Y LEVSSPG +RP+ +++DF++ G V Sbjct: 77 DPIKQNYFLEVSSPGAERPLKKEADFMKALGKNV 110 >gi|157828687|ref|YP_001494929.1| hypothetical protein A1G_04605 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933406|ref|YP_001650195.1| ribosome maturation protein RimP [Rickettsia rickettsii str. Iowa] gi|167012960|sp|A8GSP6|RIMP_RICRS RecName: Full=Ribosome maturation factor rimP gi|189040651|sp|B0BY63|RIMP_RICRO RecName: Full=Ribosome maturation factor rimP gi|157801168|gb|ABV76421.1| hypothetical protein A1G_04605 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908493|gb|ABY72789.1| hypothetical cytosolic protein [Rickettsia rickettsii str. Iowa] Length = 161 Score = 67.4 bits (163), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 87/160 (54%), Gaps = 9/160 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVER-DDGNMTLRDCEELSQAISPILDVE 83 I++VI+ + +M F V + +++I ++ + +++ DC + S+ IS ILDVE Sbjct: 8 ITNVIEESLTDMGFELVLVKFKGVNPKVVEILIDSLNSEKVSVEDCTKASRTISAILDVE 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 ++IE Y LEV+S G++RP+V+ ++ R+ V ++ K + GKI+ Sbjct: 68 DLIEAAYSLEVASSGLERPLVKFENYNRFLEREVKIKLKELLNGKTRYQGKIIKAENNKI 127 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 +L+ E E ++ I +D + +A L++T+E+ + L Sbjct: 128 YLKCE--------EQEVLIDYDLIKNANLVLTEEVFKKLL 159 >gi|152976183|ref|YP_001375700.1| hypothetical protein Bcer98_2469 [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189039695|sp|A7GRE7|RIMP_BACCN RecName: Full=Ribosome maturation factor rimP gi|152024935|gb|ABS22705.1| protein of unknown function DUF150 [Bacillus cytotoxicus NVH 391-98] Length = 156 Score = 67.4 bits (163), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 85/155 (54%), Gaps = 12/155 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ QP++EE++ V + ++E K+ L++F++ + G + + +C +S+ +S LD E Sbjct: 9 VEALAQPIVEELNLELVDVEYVKEGKDWFLRVFIDSETG-VDIEECGAVSERLSEALDKE 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM---GTSE 140 + I Y L+VSSPG +RP+ ++ DF + G VA + ++ GK++ GT+ Sbjct: 68 DPIPHLYFLDVSSPGAERPLKKEKDFEQAVGSQVAIKTYEPIDGEKMFEGKLLSYDGTTI 127 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 T K ++ E I I D + +ARL VT Sbjct: 128 TLLLTIKTRKKE-------IQIPMDKVANARLAVT 155 >gi|328885405|emb|CCA58644.1| conserved hypothetical protein [Streptomyces venezuelae ATCC 10712] Length = 168 Score = 67.4 bits (163), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 40/96 (41%), Positives = 59/96 (61%), Gaps = 3/96 (3%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENII-EGHYRLEVSSPGIDRPMVRKSDFL 110 LL+I V+ D+G + L C ELS+AIS LD + + EG Y LEVSSPG DRP+ + ++ Sbjct: 37 LLRIVVDSDEG-VELDACAELSRAISEKLDETDAMGEGEYVLEVSSPGADRPLTQHRHYV 95 Query: 111 RWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE 146 R G +V ++ S G ++L+ +I+ E G LE Sbjct: 96 RATGRLVKLQLS-SDGAAEELVARIVAVDEDGLDLE 130 >gi|110801637|ref|YP_698977.1| hypothetical protein CPR_1662 [Clostridium perfringens SM101] gi|123341718|sp|Q0SSD0|RIMP_CLOPS RecName: Full=Ribosome maturation factor rimP gi|110682138|gb|ABG85508.1| conserved hypothetical protein [Clostridium perfringens SM101] Length = 154 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 72/129 (55%), Gaps = 1/129 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L D+ ++ P+++E + I ++E N L++++E+ + ++LRDCE +S+A+S + Sbjct: 6 LVADLEALCAPIVKEKGYDLYHIEYVKENNEYYLRLYIEKPEERISLRDCEIVSRALSDM 65 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD+E+ I+ Y LEVSSPG++R + F R+ G + S ++ + G + Sbjct: 66 LDIEDPIKDAYFLEVSSPGLNRRLHSDEHFNRFIGKEIFVGFKSSLSGRKNVKGILKDVQ 125 Query: 140 ETGFFLEKE 148 E +E E Sbjct: 126 ENEIIVECE 134 >gi|307129383|ref|YP_003881399.1| hypothetical protein Dda3937_02343 [Dickeya dadantii 3937] gi|306526912|gb|ADM96842.1| conserved protein [Dickeya dadantii 3937] Length = 150 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 68/115 (59%), Gaps = 1/115 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I +E + + V I + + L+I+++ +DG +T+ DC ++S +S +L Sbjct: 4 LEQKLTEMISAPVEALGYELVGIEFIRGRQSTLRIYIDSEDG-ITVDDCADVSHQVSAVL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 DVE+ I Y LEVSSPG++RP+ + + R+ G V+ + ++ +++K G I Sbjct: 63 DVEDPISVAYNLEVSSPGLERPLFTAAHYERFAGEEVSLVLRMAVQNRRKWQGII 117 >gi|229824766|ref|ZP_04450835.1| hypothetical protein GCWU000182_00115 [Abiotrophia defectiva ATCC 49176] gi|229791095|gb|EEP27209.1| hypothetical protein GCWU000182_00115 [Abiotrophia defectiva ATCC 49176] Length = 155 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 81/144 (56%), Gaps = 7/144 (4%) Query: 27 SVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENI 85 ++I P+I + ++ V + + E N L+ +V+++ G ++ DCE++S+ S +LD E+ Sbjct: 13 ALILPIINKNNYELVDVEFVREGSNWFLRAYVDKE-GGFSVNDCEKVSREFSDLLDKEDF 71 Query: 86 IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG----TSET 141 IE Y LE+SSPG+ RP+ + DF R G V ++ + ++++ G + T Sbjct: 72 IEESYILEISSPGLGRPLKKDKDFERSIGEEVEVKLYKAFEEQKEFSGTLEAYDAQTVTI 131 Query: 142 GFFLEKEKRGE-KDMNELQIAISF 164 GF EK E K++ +++AI F Sbjct: 132 GFEDNTEKTFERKNIALIRLAIDF 155 >gi|292486835|ref|YP_003529705.1| hypothetical protein EAMY_0347 [Erwinia amylovora CFBP1430] gi|283476836|emb|CAY72674.1| UPF0090 protein yhbC [Erwinia pyrifoliae DSM 12163] gi|291552252|emb|CBA19289.1| UPF0090 protein yhbC [Erwinia amylovora CFBP1430] gi|312170903|emb|CBX79162.1| UPF0090 protein yhbC [Erwinia amylovora ATCC BAA-2158] Length = 150 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 65/111 (58%), Gaps = 1/111 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I +E + + V I + + L+I+++ +DG + + DC ++S +S ++DVE+ Sbjct: 8 LTELISAPVEALGYELVGIEFVRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVMDVED 66 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I Y LEVSSPG+DRPM + R+ G V+ + ++ +++K G I Sbjct: 67 PITVAYNLEVSSPGLDRPMFTAEHYDRFTGEEVSLVLRMAVQNRRKWQGII 117 >gi|302389799|ref|YP_003825620.1| protein of unknown function DUF150 [Thermosediminibacter oceani DSM 16646] gi|302200427|gb|ADL07997.1| protein of unknown function DUF150 [Thermosediminibacter oceani DSM 16646] Length = 162 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 36/106 (33%), Positives = 64/106 (60%), Gaps = 2/106 (1%) Query: 32 VIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHY 90 VI + F V + ++E + L+ ++++ G +TL DC+E+S+ IS LD+E+ I Y Sbjct: 17 VIHDRGFELVDVEFVQEAGSWYLRYYIDKP-GGITLDDCQEVSEEISRRLDIEDPIPHSY 75 Query: 91 RLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 LEVSSPG++RP+ ++ DFL++ G V ++ K+ G ++ Sbjct: 76 ILEVSSPGVERPLKKEKDFLKYIGSEVEIKVFEPIAGKKAFTGTLI 121 >gi|251791037|ref|YP_003005758.1| hypothetical protein Dd1591_3467 [Dickeya zeae Ech1591] gi|247539658|gb|ACT08279.1| protein of unknown function DUF150 [Dickeya zeae Ech1591] Length = 154 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 66/111 (59%), Gaps = 1/111 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I +E + + V I + + L+I+++ +DG +T+ DC ++S +S +LDVE+ Sbjct: 12 LTEMISAPVEALGYELVGIEFIRGRQSTLRIYIDSEDG-ITVDDCADVSHQVSAVLDVED 70 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I Y LEVSSPG+DRP+ + + + G V+ + ++ +++K G I Sbjct: 71 PISVAYNLEVSSPGLDRPLFTAAHYAHFVGEEVSLVLRMAVQNRRKWQGII 121 >gi|52080266|ref|YP_079057.1| hypothetical protein BL01228 [Bacillus licheniformis ATCC 14580] gi|319645954|ref|ZP_08000184.1| hypothetical protein HMPREF1012_01218 [Bacillus sp. BT1B_CT2] gi|91208394|sp|Q65JI5|RIMP_BACLD RecName: Full=Ribosome maturation factor rimP gi|52003477|gb|AAU23419.1| conserved hypothetical protein [Bacillus licheniformis ATCC 14580] gi|317391704|gb|EFV72501.1| hypothetical protein HMPREF1012_01218 [Bacillus sp. BT1B_CT2] Length = 157 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 64/94 (68%), Gaps = 2/94 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 +S ++QP+++ + V I ++E ++ L++F++ DDG + + +C ++S+A+S LD Sbjct: 9 VSEMVQPILDNLQLELVDIEFVKEGQSWFLRVFIDSDDG-VDIEECAKVSEALSEKLDEA 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + I+ +Y LEVSSPG +RP+ +++DF++ G V Sbjct: 68 DPIKQNYFLEVSSPGAERPLKKEADFMKALGKNV 101 >gi|259585768|sp|A4WEY5|RIMP_ENT38 RecName: Full=Ribosome maturation factor rimP gi|145320118|gb|ABP62265.1| protein of unknown function DUF150 [Enterobacter sp. 638] Length = 160 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 64/111 (57%), Gaps = 1/111 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I+ +E + + V I + + L+I+++ +DG + + DC ++S +S +LDVE+ Sbjct: 18 LTEMIKAPVEALGYELVGIEFIRSRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVED 76 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I Y LEVSSPG+ RPM + + G VA + ++ +++K G I Sbjct: 77 PITVAYNLEVSSPGLHRPMFTAEHYTHYIGEEVAVVLRMAVQNRRKWQGVI 127 >gi|78358200|ref|YP_389649.1| hypothetical protein Dde_3160 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|91208345|sp|Q30WJ2|RIMP_DESDG RecName: Full=Ribosome maturation factor rimP gi|78220605|gb|ABB39954.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 173 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 76/151 (50%), Gaps = 8/151 (5%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I PVI + ++ +L+I+++ DG +T+ C +S+ I L+VE+II Sbjct: 15 IITPVIRSFDLELWGMDFIQGGKAVLRIYIDGPDG-VTIDQCATVSRHIGLALEVEDIIA 73 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS-----GDKQKLIGKIMGTSETG 142 G Y LEVSSPG++RP+ + + GH E+VL + ++K G + Sbjct: 74 GAYNLEVSSPGLERPLFSAAQLAAYKGH--KAELVLRAPCAQFPGRKKFTGVVGNVEGEN 131 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 F L+ + D + +++ +D + ARLI Sbjct: 132 FTLQIDPLKGGDNLQEELSAHWDDVKKARLI 162 >gi|91208384|sp|Q31W49|RIMP_SHIBS RecName: Full=Ribosome maturation factor rimP gi|81247001|gb|ABB67709.1| conserved hypothetical protein [Shigella boydii Sb227] Length = 152 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 67/120 (55%), Gaps = 4/120 (3%) Query: 19 MGLAG---DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 MGL+ ++ +I +E + F V I + L+I+++ +DG + + DC ++S Sbjct: 1 MGLSTLEQKLTEMITAPVEALGFELVGIEFIRGHTSTLRIYIDSEDG-INVDDCADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LEVSSPG+DRP+ + R+ G V + ++ +++K G I Sbjct: 60 VSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 119 >gi|53729158|ref|ZP_00133985.2| COG0779: Uncharacterized protein conserved in bacteria [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208119|ref|YP_001053344.1| hypothetical protein APL_0637 [Actinobacillus pleuropneumoniae L20] gi|165976049|ref|YP_001651642.1| hypothetical protein APJL_0628 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149947|ref|YP_001968472.1| hypothetical protein APP7_0678 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307249836|ref|ZP_07531812.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307261094|ref|ZP_07542773.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307263275|ref|ZP_07544893.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|167016737|sp|A3N003|RIMP_ACTP2 RecName: Full=Ribosome maturation factor rimP gi|226707976|sp|B0BNR3|RIMP_ACTPJ RecName: Full=Ribosome maturation factor rimP gi|226708014|sp|B3H161|RIMP_ACTP7 RecName: Full=Ribosome maturation factor rimP gi|126096911|gb|ABN73739.1| hypothetical protein APL_0637 [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165876150|gb|ABY69198.1| hypothetical protein APJL_0628 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189915078|gb|ACE61330.1| hypothetical protein APP7_0678 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306858138|gb|EFM90218.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306869226|gb|EFN01024.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871337|gb|EFN03063.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 153 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 66/116 (56%), Gaps = 2/116 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQAISPI 79 L + ++ IE M F V I L ++++++++ G +T+ DC ++S+ +S I Sbjct: 4 LEQKLEELVSDTIESMGFELVGIECQRAGRFLTVRLYIDKE-GGVTIDDCSDVSRQVSAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LDVE+ I Y LEVSSPG+DRP+ + + R+ G + + + D++K GK+ Sbjct: 63 LDVEDPIADKYNLEVSSPGLDRPLFTLAHYQRFIGQEIVIHLRIPMFDRRKWQGKL 118 >gi|229577503|ref|YP_001178316.2| hypothetical protein Ent638_3607 [Enterobacter sp. 638] Length = 150 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 65/115 (56%), Gaps = 1/115 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I+ +E + + V I + + L+I+++ +DG + + DC ++S +S +L Sbjct: 4 LEQKLTEMIKAPVEALGYELVGIEFIRSRTSTLRIYIDSEDG-INVDDCADVSHQVSAVL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 DVE+ I Y LEVSSPG+ RPM + + G VA + ++ +++K G I Sbjct: 63 DVEDPITVAYNLEVSSPGLHRPMFTAEHYTHYIGEEVAVVLRMAVQNRRKWQGVI 117 >gi|326565083|gb|EGE15276.1| hypothetical protein E9M_00058 [Moraxella catarrhalis 46P47B1] gi|326567251|gb|EGE17371.1| hypothetical protein E9O_01044 [Moraxella catarrhalis 12P80B1] Length = 165 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 85/165 (51%), Gaps = 18/165 (10%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVE-----RDDG-NMTLRDCEELSQA 75 +++ +I P ++ I + + + LL+I++E R G ++T+ DC ++ Sbjct: 8 AELTELIAPAVDACGVDLWGIEFMPQGRKSLLRIYIESLPENRAAGEHVTIEDCSAVNHQ 67 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV--LSSGD--KQKL 131 +S +LDV + I G Y LEVSSPG DRP+ + + G + ++ + SGD ++K+ Sbjct: 68 VSGVLDVHDPIAGEYVLEVSSPGFDRPLFTREQVAAYVGETINLRLIHAIGSGDTKRRKV 127 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 +G++ E + E ++L+ I+FDS+ A L+ D Sbjct: 128 VGRLTCVGEDSMTVITE-------DKLEFNIAFDSVDKAHLVYED 165 >gi|311277857|ref|YP_003940088.1| hypothetical protein Entcl_0527 [Enterobacter cloacae SCF1] gi|308747052|gb|ADO46804.1| protein of unknown function DUF150 [Enterobacter cloacae SCF1] Length = 150 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 65/111 (58%), Gaps = 1/111 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ ++ +E + F V I + + L+I+++ +DG + + DC ++S +S ++DVE+ Sbjct: 8 LTEMLTAPVEALGFELVGIEFVRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVMDVED 66 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I Y LEVSSPG+DRPM + R+ G V+ + ++ +++K G I Sbjct: 67 PITVAYNLEVSSPGLDRPMFTAEHYTRFLGEEVSLVLRMAVQNRRKWQGII 117 >gi|166030877|ref|ZP_02233706.1| hypothetical protein DORFOR_00557 [Dorea formicigenerans ATCC 27755] gi|166029144|gb|EDR47901.1| hypothetical protein DORFOR_00557 [Dorea formicigenerans ATCC 27755] Length = 157 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 64/107 (59%), Gaps = 2/107 (1%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 ++ P++EE+ F V + ++E ++ L+ ++++ G +T+ DCE +S+ +S ILD ++ I Sbjct: 14 ILNPIMEELEFELVDVEYVKEGSMWYLRAYIDKP-GGITVNDCEAVSRRLSDILDEKDFI 72 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 E Y LEVSSPG+ RP+ ++ D+ R G V K++ G Sbjct: 73 EDSYVLEVSSPGLGRPLKKEKDYKRNLGKEVEIRTYRMVDKKKEFTG 119 >gi|165936752|ref|ZP_02225319.1| protein YhbC [Yersinia pestis biovar Orientalis str. IP275] gi|165915401|gb|EDR34011.1| protein YhbC [Yersinia pestis biovar Orientalis str. IP275] Length = 134 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 35/102 (34%), Positives = 59/102 (57%), Gaps = 1/102 (0%) Query: 34 EEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLE 93 E + + V I + + L+I+++ DDG +T+ C ++S +S +LDVE+ I Y LE Sbjct: 1 EALGYELVGIEFIRGRQSTLRIYIDSDDG-ITVDACADVSHQVSAVLDVEDPITVAYNLE 59 Query: 94 VSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 VSSPG+DRPM + R+ G V + ++ +++K G I Sbjct: 60 VSSPGLDRPMFTAEHYTRYLGEEVTLVLRMAMQNRRKWQGII 101 >gi|71276364|ref|ZP_00652641.1| Protein of unknown function DUF150 [Xylella fastidiosa Dixon] gi|71898653|ref|ZP_00680823.1| Protein of unknown function DUF150 [Xylella fastidiosa Ann-1] gi|170729431|ref|YP_001774864.1| hypothetical protein Xfasm12_0201 [Xylella fastidiosa M12] gi|71162826|gb|EAO12551.1| Protein of unknown function DUF150 [Xylella fastidiosa Dixon] gi|71731600|gb|EAO33661.1| Protein of unknown function DUF150 [Xylella fastidiosa Ann-1] gi|167964224|gb|ACA11234.1| conserved hypothetical protein [Xylella fastidiosa M12] Length = 215 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 67/118 (56%), Gaps = 6/118 (5%) Query: 56 FVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGH 115 F + + +++ DCE +S+ +S LD+E I G+Y LEVSSPG+DR + F R + H Sbjct: 61 FAMQPECMVSIDDCERVSREVSAYLDLEEPISGNYTLEVSSPGLDRRLFTLEQFARHHNH 120 Query: 116 VVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 +V + L ++L GKI+ + G F+ +N +++A+ F+++ AR++ Sbjct: 121 LVKVGLKLQQHGSRRLQGKIVRVEQVGGFVVLL------VNGVELAVDFNNIDKARIV 172 >gi|330447379|ref|ZP_08311028.1| ribosome maturation protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491570|dbj|GAA05525.1| ribosome maturation protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 151 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 73/120 (60%), Gaps = 2/120 (1%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 L ++ +++P + + + V + + ++ L++F++ ++G + + DC E+S+ IS Sbjct: 3 ALETQLTEMLEPSVLALGYELVGLEFIRAGEHSTLRVFIDHENG-INVDDCAEVSRQISA 61 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 ++DVE+ I Y LEVSSPG++RP+ + + + ++ GH + + ++ G+++K G I+ Sbjct: 62 VMDVEDPITVAYNLEVSSPGLERPLFKAAHYEQFVGHEASIVLKMAMGNRRKWKGDIVAV 121 >gi|304439998|ref|ZP_07399891.1| protein of hypothetical function DUF150 [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371490|gb|EFM25103.1| protein of hypothetical function DUF150 [Peptoniphilus duerdenii ATCC BAA-1640] Length = 154 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 36/103 (34%), Positives = 63/103 (61%), Gaps = 2/103 (1%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISP 78 G+ ++ + V EE + V+++ + + L+ +F+ ++DG ++L DC+ +S+AI Sbjct: 6 GILSKLNEISTKVAEERGYEIVEVAYKKATPHSLVSVFIYKEDG-ISLDDCDTMSRAIEE 64 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 LD E+IIE Y LEVSSPG+DRP+ + D R G +V ++ Sbjct: 65 ELDKEDIIEESYYLEVSSPGLDRPIKTQDDLRRNKGKLVEAKL 107 >gi|157085946|gb|ABV15624.1| hypothetical protein CKO_04571 [Citrobacter koseri ATCC BAA-895] Length = 140 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 35/108 (32%), Positives = 62/108 (57%), Gaps = 1/108 (0%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I +E + + V I + + L+I+++ +DG + + DC ++S +S +LDVE+ I Sbjct: 1 MITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVEDPIT 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 Y LEVSSPG+DRPM + R+ G V + ++ +++K G I Sbjct: 60 VAYNLEVSSPGLDRPMFTAEHYARFLGEEVTLVLRMAVQNRRKWQGVI 107 >gi|254507524|ref|ZP_05119658.1| conserved hypothetical protein [Vibrio parahaemolyticus 16] gi|219549594|gb|EED26585.1| conserved hypothetical protein [Vibrio parahaemolyticus 16] Length = 151 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 58/83 (69%), Gaps = 1/83 (1%) Query: 53 LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRW 112 L+IF++ ++G + + DC E+S+ +S ++DVE+ I Y LEVSSPG++RP+ + + + ++ Sbjct: 37 LRIFIDHENG-INVEDCAEVSRQVSAVMDVEDPITVAYNLEVSSPGLERPLFKAAHYEQF 95 Query: 113 NGHVVACEIVLSSGDKQKLIGKI 135 GH V+ + ++ G+++K G I Sbjct: 96 IGHEVSIVLKMAVGNRRKWKGVI 118 >gi|78044682|ref|YP_360590.1| hypothetical protein CHY_1770 [Carboxydothermus hydrogenoformans Z-2901] gi|91208344|sp|Q3AB94|RIMP_CARHZ RecName: Full=Ribosome maturation factor rimP gi|77996797|gb|ABB15696.1| conserved hypothetical protein [Carboxydothermus hydrogenoformans Z-2901] Length = 154 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 83/155 (53%), Gaps = 10/155 (6%) Query: 19 MGLAGDISSVIQPVIE----EMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELS 73 MG I + P+ E E++ V + ++E L+I++++D+G + L DC+ S Sbjct: 1 MGRNKGIEQKVWPLAERVGGELNLEVVDVEFVKEAGRYFLRIYIDKDEG-VDLDDCQNFS 59 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 + I ILD E+ I Y LEVSSPGI+RP+ + +DF ++ G + + +++ G Sbjct: 60 ERIGVILDEEDPIPQSYYLEVSSPGIERPLKKLADFEKFAGREAQIKTFAAIEGQKQFKG 119 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIA---ISFD 165 K++G + ++ K GE + QIA ++FD Sbjct: 120 KLLGVRDGQVVIDAGK-GEVQIPLEQIAKANLTFD 153 >gi|150016082|ref|YP_001308336.1| hypothetical protein Cbei_1198 [Clostridium beijerinckii NCIMB 8052] gi|189038629|sp|A6LSQ0|RIMP_CLOB8 RecName: Full=Ribosome maturation factor rimP gi|149902547|gb|ABR33380.1| protein of unknown function DUF150 [Clostridium beijerinckii NCIMB 8052] Length = 152 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 80/149 (53%), Gaps = 11/149 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I +++P++ E+S + ++E L+I+++++ G ++L DCE +S+ +S ILDVE Sbjct: 10 IEELVRPIVSELSCELYYVEYVKENGEFYLRIYIDKE-GRVSLNDCEAVSRRVSEILDVE 68 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I+ Y LEVSSPG++R + ++ F ++ G V + S + + G + SE Sbjct: 69 DPIKEAYYLEVSSPGLNRGLYKEEHFKKYIGSEVLIRLTSSLNGVKSVKGLLRDVSEDSI 128 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 +E E +I I D + +A L Sbjct: 129 LVE---------GETEIQIPRDKIKAANL 148 >gi|323495467|ref|ZP_08100542.1| ribosome maturation protein RimP [Vibrio sinaloensis DSM 21326] gi|323319464|gb|EGA72400.1| ribosome maturation protein RimP [Vibrio sinaloensis DSM 21326] Length = 140 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 58/83 (69%), Gaps = 1/83 (1%) Query: 53 LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRW 112 L+IF++ ++G + + DC E+S+ +S ++DVE+ I Y LEVSSPG++RP+ + + + ++ Sbjct: 26 LRIFIDHENG-INVEDCAEVSRQVSAVMDVEDPITVAYNLEVSSPGLERPLFKAAHYEQF 84 Query: 113 NGHVVACEIVLSSGDKQKLIGKI 135 GH V+ + ++ G+++K G I Sbjct: 85 IGHEVSIVLKMAVGNRRKWKGVI 107 >gi|260775411|ref|ZP_05884308.1| UPF0090 domain-containing protein [Vibrio coralliilyticus ATCC BAA-450] gi|260608592|gb|EEX34757.1| UPF0090 domain-containing protein [Vibrio coralliilyticus ATCC BAA-450] Length = 151 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 59/83 (71%), Gaps = 1/83 (1%) Query: 53 LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRW 112 L+IF++ ++G +++ DC E+S+ +S ++DVE+ I Y LEVSSPG++RP+ + + + ++ Sbjct: 37 LRIFIDHENG-ISVDDCAEVSRQVSAVMDVEDPITVAYNLEVSSPGLERPLFKAAHYEQF 95 Query: 113 NGHVVACEIVLSSGDKQKLIGKI 135 GH V+ + ++ G+++K G I Sbjct: 96 IGHEVSIVLKMAVGNRRKWKGVI 118 >gi|86153804|ref|ZP_01072007.1| YlxS [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842765|gb|EAQ59977.1| YlxS [Campylobacter jejuni subsp. jejuni HB93-13] Length = 140 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 11/123 (8%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 + +I+V+++ G + L DC LS+ +SPI DVE + G Y LEVSSPG++R + + F + Sbjct: 27 IYRIYVQKE-GGVNLDDCARLSEILSPIFDVEPPVNGEYFLEVSSPGLERKLSKIEHFAK 85 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 G +V +++ +K+K KI+ + LE + EK I+F+ + AR Sbjct: 86 SIGELVK----ITTNEKEKFEAKIIAVDDENITLENLENKEK------TTINFNDIKKAR 135 Query: 172 LIV 174 V Sbjct: 136 TFV 138 >gi|259016317|sp|B0U1Q6|RIMP_XYLFM RecName: Full=Ribosome maturation factor rimP Length = 199 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 67/118 (56%), Gaps = 6/118 (5%) Query: 56 FVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGH 115 F + + +++ DCE +S+ +S LD+E I G+Y LEVSSPG+DR + F R + H Sbjct: 45 FAMQPECMVSIDDCERVSREVSAYLDLEEPISGNYTLEVSSPGLDRRLFTLEQFARHHNH 104 Query: 116 VVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 +V + L ++L GKI+ + G F+ +N +++A+ F+++ AR++ Sbjct: 105 LVKVGLKLQQHGSRRLQGKIVRVEQVGGFVVLL------VNGVELAVDFNNIDKARIV 156 >gi|292492784|ref|YP_003528223.1| hypothetical protein Nhal_2769 [Nitrosococcus halophilus Nc4] gi|291581379|gb|ADE15836.1| protein of unknown function DUF150 [Nitrosococcus halophilus Nc4] Length = 150 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 66/114 (57%), Gaps = 2/114 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 IS +++PV+ + + V + L K +LL+I+++ G +T+ DCE +S +S +LDVE Sbjct: 7 ISKLVEPVVTALGYELVGVERLSIGKGVLLRIYIDTPLG-VTVDDCERVSHQVSALLDVE 65 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 + Y LE+SSPG+DRP+ + F R+ G V+ + +++ G + G Sbjct: 66 EPMASPYTLEISSPGLDRPLFTEEHFKRFAGAEVSITLSEPLNGRRRFKGLLRG 119 >gi|209920647|ref|YP_002294731.1| hypothetical protein ECSE_3456 [Escherichia coli SE11] gi|215488488|ref|YP_002330919.1| hypothetical protein E2348C_3451 [Escherichia coli O127:H6 str. E2348/69] gi|253771994|ref|YP_003034825.1| hypothetical protein ECBD_0570 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|260845985|ref|YP_003223763.1| hypothetical protein ECO103_3919 [Escherichia coli O103:H2 str. 12009] gi|260857299|ref|YP_003231190.1| hypothetical protein ECO26_4276 [Escherichia coli O26:H11 str. 11368] gi|260869922|ref|YP_003236324.1| hypothetical protein ECO111_3994 [Escherichia coli O111:H- str. 11128] gi|261228182|ref|ZP_05942463.1| hypothetical protein EscherichiacoliO157_26753 [Escherichia coli O157:H7 str. FRIK2000] gi|261255038|ref|ZP_05947571.1| hypothetical protein EscherichiacoliO157EcO_04328 [Escherichia coli O157:H7 str. FRIK966] gi|297519523|ref|ZP_06937909.1| hypothetical protein EcolOP_17907 [Escherichia coli OP50] gi|300817578|ref|ZP_07097794.1| conserved hypothetical protein [Escherichia coli MS 107-1] gi|300823867|ref|ZP_07103991.1| conserved hypothetical protein [Escherichia coli MS 119-7] gi|300897934|ref|ZP_07116313.1| conserved hypothetical protein [Escherichia coli MS 198-1] gi|300904356|ref|ZP_07122209.1| hypothetical protein HMPREF9536_02438 [Escherichia coli MS 84-1] gi|300918925|ref|ZP_07135484.1| conserved hypothetical protein [Escherichia coli MS 115-1] gi|300926091|ref|ZP_07141909.1| hypothetical protein HMPREF9548_04117 [Escherichia coli MS 182-1] gi|300929860|ref|ZP_07145306.1| conserved hypothetical protein [Escherichia coli MS 187-1] gi|300938080|ref|ZP_07152858.1| conserved hypothetical protein [Escherichia coli MS 21-1] gi|300948820|ref|ZP_07162888.1| conserved hypothetical protein [Escherichia coli MS 116-1] gi|300955756|ref|ZP_07168101.1| hypothetical protein HMPREF9547_01616 [Escherichia coli MS 175-1] gi|300977837|ref|ZP_07174077.1| hypothetical protein HMPREF9553_01175 [Escherichia coli MS 200-1] gi|300990770|ref|ZP_07179342.1| conserved hypothetical protein [Escherichia coli MS 45-1] gi|301022025|ref|ZP_07185968.1| conserved hypothetical protein [Escherichia coli MS 69-1] gi|301025985|ref|ZP_07189467.1| conserved hypothetical protein [Escherichia coli MS 196-1] gi|301047987|ref|ZP_07195029.1| conserved hypothetical protein [Escherichia coli MS 185-1] gi|301301774|ref|ZP_07207908.1| hypothetical protein HMPREF9347_00334 [Escherichia coli MS 124-1] gi|301326407|ref|ZP_07219761.1| conserved hypothetical protein [Escherichia coli MS 78-1] gi|301644881|ref|ZP_07244853.1| conserved hypothetical protein [Escherichia coli MS 146-1] gi|306816486|ref|ZP_07450618.1| hypothetical protein ECNC101_07709 [Escherichia coli NC101] gi|307139857|ref|ZP_07499213.1| hypothetical protein EcolH7_17218 [Escherichia coli H736] gi|309785497|ref|ZP_07680128.1| conserved hypothetical protein [Shigella dysenteriae 1617] gi|309793748|ref|ZP_07688174.1| conserved hypothetical protein [Escherichia coli MS 145-7] gi|312972557|ref|ZP_07786730.1| conserved hypothetical protein [Escherichia coli 1827-70] gi|42143|emb|CAA25199.1| unnamed protein product [Escherichia coli] gi|169753506|gb|ACA76205.1| protein of unknown function DUF150 [Escherichia coli ATCC 8739] gi|209913906|dbj|BAG78980.1| conserved hypothetical protein [Escherichia coli SE11] gi|215266560|emb|CAS10999.1| predicted protein [Escherichia coli O127:H6 str. E2348/69] gi|253323038|gb|ACT27640.1| protein of unknown function DUF150 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|257755948|dbj|BAI27450.1| conserved predicted protein [Escherichia coli O26:H11 str. 11368] gi|257761132|dbj|BAI32629.1| conserved predicted protein [Escherichia coli O103:H2 str. 12009] gi|257766278|dbj|BAI37773.1| conserved predicted protein [Escherichia coli O111:H- str. 11128] gi|260447801|gb|ACX38223.1| protein of unknown function DUF150 [Escherichia coli DH1] gi|281180214|dbj|BAI56544.1| conserved hypothetical protein [Escherichia coli SE15] gi|284923194|emb|CBG36288.1| conserved hypothetical protein [Escherichia coli 042] gi|299879880|gb|EFI88091.1| conserved hypothetical protein [Escherichia coli MS 196-1] gi|300300130|gb|EFJ56515.1| conserved hypothetical protein [Escherichia coli MS 185-1] gi|300308214|gb|EFJ62734.1| hypothetical protein HMPREF9553_01175 [Escherichia coli MS 200-1] gi|300317389|gb|EFJ67173.1| hypothetical protein HMPREF9547_01616 [Escherichia coli MS 175-1] gi|300358364|gb|EFJ74234.1| conserved hypothetical protein [Escherichia coli MS 198-1] gi|300397740|gb|EFJ81278.1| conserved hypothetical protein [Escherichia coli MS 69-1] gi|300403707|gb|EFJ87245.1| hypothetical protein HMPREF9536_02438 [Escherichia coli MS 84-1] gi|300407078|gb|EFJ90616.1| conserved hypothetical protein [Escherichia coli MS 45-1] gi|300413951|gb|EFJ97261.1| conserved hypothetical protein [Escherichia coli MS 115-1] gi|300417856|gb|EFK01167.1| hypothetical protein HMPREF9548_04117 [Escherichia coli MS 182-1] gi|300451709|gb|EFK15329.1| conserved hypothetical protein [Escherichia coli MS 116-1] gi|300456940|gb|EFK20433.1| conserved hypothetical protein [Escherichia coli MS 21-1] gi|300462222|gb|EFK25715.1| conserved hypothetical protein [Escherichia coli MS 187-1] gi|300523635|gb|EFK44704.1| conserved hypothetical protein [Escherichia coli MS 119-7] gi|300529876|gb|EFK50938.1| conserved hypothetical protein [Escherichia coli MS 107-1] gi|300842755|gb|EFK70515.1| hypothetical protein HMPREF9347_00334 [Escherichia coli MS 124-1] gi|300846896|gb|EFK74656.1| conserved hypothetical protein [Escherichia coli MS 78-1] gi|301076826|gb|EFK91632.1| conserved hypothetical protein [Escherichia coli MS 146-1] gi|305850051|gb|EFM50510.1| hypothetical protein ECNC101_07709 [Escherichia coli NC101] gi|307625229|gb|ADN69533.1| hypothetical protein UM146_00520 [Escherichia coli UM146] gi|308122705|gb|EFO59967.1| conserved hypothetical protein [Escherichia coli MS 145-7] gi|308926617|gb|EFP72093.1| conserved hypothetical protein [Shigella dysenteriae 1617] gi|310332499|gb|EFP99712.1| conserved hypothetical protein [Escherichia coli 1827-70] gi|312947729|gb|ADR28556.1| hypothetical protein NRG857_15730 [Escherichia coli O83:H1 str. NRG 857C] gi|315062478|gb|ADT76805.1| conserved hypothetical protein [Escherichia coli W] gi|315257096|gb|EFU37064.1| 15 kDa protein [Escherichia coli MS 85-1] gi|315288928|gb|EFU48326.1| conserved hypothetical protein [Escherichia coli MS 110-3] gi|315294915|gb|EFU54254.1| conserved hypothetical protein [Escherichia coli MS 153-1] gi|315297878|gb|EFU57148.1| conserved hypothetical protein [Escherichia coli MS 16-3] gi|320175534|gb|EFW50630.1| hypothetical protein SDB_01982 [Shigella dysenteriae CDC 74-1112] gi|320189524|gb|EFW64183.1| hypothetical protein ECoD_04531 [Escherichia coli O157:H7 str. EC1212] gi|320202084|gb|EFW76659.1| hypothetical protein ECoL_00712 [Escherichia coli EC4100B] gi|320640242|gb|EFX09814.1| ribosome maturation protein RimP [Escherichia coli O157:H7 str. G5101] gi|320645539|gb|EFX14548.1| ribosome maturation protein RimP [Escherichia coli O157:H- str. 493-89] gi|320650849|gb|EFX19306.1| ribosome maturation protein RimP [Escherichia coli O157:H- str. H 2687] gi|320656230|gb|EFX24142.1| ribosome maturation protein RimP [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661920|gb|EFX29328.1| ribosome maturation protein RimP [Escherichia coli O55:H7 str. USDA 5905] gi|320666755|gb|EFX33734.1| ribosome maturation protein RimP [Escherichia coli O157:H7 str. LSU-61] gi|323154384|gb|EFZ40585.1| hypothetical protein ECEPECA14_3686 [Escherichia coli EPECa14] gi|323173569|gb|EFZ59198.1| hypothetical protein ECLT68_1886 [Escherichia coli LT-68] gi|323178883|gb|EFZ64459.1| hypothetical protein ECOK1180_2616 [Escherichia coli 1180] gi|323183125|gb|EFZ68523.1| hypothetical protein ECOK1357_3540 [Escherichia coli 1357] gi|324008769|gb|EGB77988.1| hypothetical protein HMPREF9532_01528 [Escherichia coli MS 57-2] gi|324012104|gb|EGB81323.1| hypothetical protein HMPREF9533_03857 [Escherichia coli MS 60-1] gi|324018306|gb|EGB87525.1| hypothetical protein HMPREF9542_03022 [Escherichia coli MS 117-3] gi|326337872|gb|EGD61706.1| hypothetical protein ECF_05498 [Escherichia coli O157:H7 str. 1125] gi|326347441|gb|EGD71166.1| hypothetical protein ECoA_00752 [Escherichia coli O157:H7 str. 1044] gi|330909226|gb|EGH37740.1| clustered with transcription termination protein NusA [Escherichia coli AA86] gi|332086489|gb|EGI91636.1| hypothetical protein SD15574_3713 [Shigella dysenteriae 155-74] gi|332345127|gb|AEE58461.1| conserved hypothetical protein [Escherichia coli UMNK88] gi|332754726|gb|EGJ85092.1| hypothetical protein SF274771_3795 [Shigella flexneri 2747-71] gi|332765167|gb|EGJ95394.1| ribosome maturation protein [Shigella flexneri 2930-71] gi|332998812|gb|EGK18408.1| hypothetical protein SFVA6_4094 [Shigella flexneri VA-6] gi|332999249|gb|EGK18835.1| hypothetical protein SFK272_3978 [Shigella flexneri K-272] gi|333000398|gb|EGK19981.1| hypothetical protein SFK218_4200 [Shigella flexneri K-218] gi|333014539|gb|EGK33886.1| hypothetical protein SFK304_4023 [Shigella flexneri K-304] Length = 140 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 61/107 (57%), Gaps = 1/107 (0%) Query: 29 IQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEG 88 I +E + F V I + + L+I+++ +DG + + DC ++S +S +LDVE+ I Sbjct: 2 ITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVEDPITV 60 Query: 89 HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 Y LEVSSPG+DRP+ + R+ G V + ++ +++K G I Sbjct: 61 AYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 107 >gi|259586205|sp|Q2NW25|RIMP_SODGM RecName: Full=Ribosome maturation factor rimP Length = 152 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 66/111 (59%), Gaps = 1/111 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I +E + F V I + + L+I++ D+G +T+ DC ++S +S +LDVE+ Sbjct: 10 LTEMITAPVEALGFELVGIEFIRGRQSTLRIYINSDEG-ITVDDCADVSHQVSAVLDVED 68 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I Y LEVSSPG+DRP+ + + ++ G V+ + ++ +++K G I Sbjct: 69 PISVAYSLEVSSPGLDRPLFTAAHYRQFIGSDVSVVLRIAVQNRRKWQGII 119 >gi|161984849|ref|YP_409537.2| hypothetical protein SBO_3212 [Shigella boydii Sb227] Length = 150 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 63/111 (56%), Gaps = 1/111 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I +E + F V I + L+I+++ +DG + + DC ++S +S +LDVE+ Sbjct: 8 LTEMITAPVEALGFELVGIEFIRGHTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVED 66 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I Y LEVSSPG+DRP+ + R+ G V + ++ +++K G I Sbjct: 67 PITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 117 >gi|258620311|ref|ZP_05715349.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|258624682|ref|ZP_05719616.1| UPF0090 protein [Vibrio mimicus VM603] gi|262163945|ref|ZP_06031684.1| UPF0090 domain-containing protein [Vibrio mimicus VM223] gi|262172283|ref|ZP_06039961.1| UPF0090 domain-containing protein [Vibrio mimicus MB-451] gi|258582969|gb|EEW07784.1| UPF0090 protein [Vibrio mimicus VM603] gi|258587190|gb|EEW11901.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|261893359|gb|EEY39345.1| UPF0090 domain-containing protein [Vibrio mimicus MB-451] gi|262027473|gb|EEY46139.1| UPF0090 domain-containing protein [Vibrio mimicus VM223] Length = 151 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 58/83 (69%), Gaps = 1/83 (1%) Query: 53 LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRW 112 L+IF++ ++G +T+ DC E+S+ +S +LDVE+ I Y LEVSSPG++RP+ + + + ++ Sbjct: 37 LRIFIDHENG-ITVEDCAEVSRQVSAVLDVEDPISVVYNLEVSSPGLERPLFKAAHYEQF 95 Query: 113 NGHVVACEIVLSSGDKQKLIGKI 135 GH V+ + ++ +++K G I Sbjct: 96 IGHEVSIVLKMAVANRRKWKGII 118 >gi|253991504|ref|YP_003042860.1| hypothetical protein PAU_04031 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638382|emb|CAR67004.1| Conserved Hypothetical Protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782954|emb|CAQ86119.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 152 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 72/120 (60%), Gaps = 4/120 (3%) Query: 19 MGLAG---DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 MGL+ ++++I +E + F V + + + L+I+++ ++G +T+ DC ++S Sbjct: 1 MGLSTLEQKLTAMISAPVEALGFELVGLEFIRARVSTLRIYIDSENG-ITVDDCADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LE+SSPG++RP+ + R+ G V+ + L+ +++K +G I Sbjct: 60 VSAVLDVEDPISVLYNLEISSPGLERPLFTAEHYQRFIGEEVSLVLRLAMQNRRKWLGVI 119 >gi|237730090|ref|ZP_04560571.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226908696|gb|EEH94614.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 163 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 65/111 (58%), Gaps = 1/111 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I +E + + V I + + L+I+++ +DG + + DC ++S +S ++DVE+ Sbjct: 21 LTEMITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVMDVED 79 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I Y LEVSSPG+DRP+ ++R+ G V + ++ +++K G I Sbjct: 80 PITVAYNLEVSSPGLDRPLFTAEHYVRFLGEEVTLVLRMAVQNRRKWQGVI 130 >gi|323491075|ref|ZP_08096267.1| ribosome maturation protein RimP [Vibrio brasiliensis LMG 20546] gi|323314739|gb|EGA67811.1| ribosome maturation protein RimP [Vibrio brasiliensis LMG 20546] Length = 151 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 58/83 (69%), Gaps = 1/83 (1%) Query: 53 LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRW 112 L+IF++ ++G + + DC E+S+ +S ++DVE+ I Y LEVSSPG++RP+ + + + ++ Sbjct: 37 LRIFIDHENG-INVEDCAEVSRQVSAVMDVEDPITVAYNLEVSSPGLERPLFKAAHYEQF 95 Query: 113 NGHVVACEIVLSSGDKQKLIGKI 135 GH V+ + ++ G+++K G I Sbjct: 96 IGHEVSIVLKMAVGNRRKWKGII 118 >gi|261212248|ref|ZP_05926534.1| UPF0090 domain-containing protein [Vibrio sp. RC341] gi|260838856|gb|EEX65507.1| UPF0090 domain-containing protein [Vibrio sp. RC341] Length = 151 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 58/85 (68%), Gaps = 1/85 (1%) Query: 53 LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRW 112 L+IF++ ++G +T+ DC E+S+ +S +LDVE+ I Y LEVSSPG++RP+ + + + ++ Sbjct: 37 LRIFIDHENG-ITVEDCAEVSRQVSAVLDVEDPISVVYNLEVSSPGLERPLFKAAHYEQF 95 Query: 113 NGHVVACEIVLSSGDKQKLIGKIMG 137 GH V+ + ++ +++K G I Sbjct: 96 IGHEVSIVLKMAVANRRKWKGFIQA 120 >gi|162382799|ref|YP_454055.2| hypothetical protein SG0375 [Sodalis glossinidius str. 'morsitans'] Length = 150 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 66/111 (59%), Gaps = 1/111 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I +E + F V I + + L+I++ D+G +T+ DC ++S +S +LDVE+ Sbjct: 8 LTEMITAPVEALGFELVGIEFIRGRQSTLRIYINSDEG-ITVDDCADVSHQVSAVLDVED 66 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I Y LEVSSPG+DRP+ + + ++ G V+ + ++ +++K G I Sbjct: 67 PISVAYSLEVSSPGLDRPLFTAAHYRQFIGSDVSVVLRIAVQNRRKWQGII 117 >gi|157414451|ref|YP_001481707.1| hypothetical protein C8J_0131 [Campylobacter jejuni subsp. jejuni 81116] gi|205425409|sp|A8FJU3|RIMP_CAMJ8 RecName: Full=Ribosome maturation factor rimP gi|157385415|gb|ABV51730.1| hypothetical protein C8J_0131 [Campylobacter jejuni subsp. jejuni 81116] gi|315931533|gb|EFV10500.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni 327] Length = 140 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 11/123 (8%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 + +I+V+++ G + L DC LS+ +SPI DVE + G Y LEVSSPG++R + + F + Sbjct: 27 IYRIYVQKE-GGVNLDDCARLSEILSPIFDVEPPVNGEYFLEVSSPGLERKLSKIEHFAK 85 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 G +V +++ +K+K KI+ + LE + EK I+F+ + AR Sbjct: 86 SIGELVK----ITTNEKEKFEAKIIAVDDENITLENLENKEK------TTINFNDIKKAR 135 Query: 172 LIV 174 V Sbjct: 136 TFV 138 >gi|126664887|ref|ZP_01735871.1| hypothetical protein MELB17_03575 [Marinobacter sp. ELB17] gi|126631213|gb|EBA01827.1| hypothetical protein MELB17_03575 [Marinobacter sp. ELB17] Length = 153 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 67/114 (58%), Gaps = 1/114 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +++PV+E + + I + LL++F++ + + + DCE++S+ +S ++DVE Sbjct: 8 LEDILRPVVEGLGYEYWGIEFRARGHESLLRLFIDDVEKGIGIEDCEKVSRQVSSVMDVE 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 + I+ Y LEVSSPG+DRP+ + + + GH V + ++ ++K G + G Sbjct: 68 DPIQSEYTLEVSSPGMDRPLFELAQYQAFVGHKVQIRLRMAFEGRRKFQGLLNG 121 >gi|148270199|ref|YP_001244659.1| hypothetical protein Tpet_1066 [Thermotoga petrophila RKU-1] gi|166977875|sp|A5ILL0|RIMP_THEP1 RecName: Full=Ribosome maturation factor rimP gi|147735743|gb|ABQ47083.1| protein of unknown function DUF150 [Thermotoga petrophila RKU-1] Length = 150 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 36/104 (34%), Positives = 59/104 (56%), Gaps = 4/104 (3%) Query: 47 EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRK 106 E + +L+I ++ G +++RDCE S+ I LD E++IE Y LEVSSPG+DRP+ Sbjct: 33 ESRGWVLRIIIDNPVGYVSVRDCELFSREIERFLDREDLIEHSYTLEVSSPGLDRPLRGP 92 Query: 107 SDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKR 150 D++R+ G + + + D + IG+I + + EKR Sbjct: 93 KDYVRFTGKLAK----IVTKDGKTFIGRIESFVDGTITISDEKR 132 >gi|148926309|ref|ZP_01809993.1| hypothetical protein Cj8486_0133 [Campylobacter jejuni subsp. jejuni CG8486] gi|145844701|gb|EDK21806.1| hypothetical protein Cj8486_0133 [Campylobacter jejuni subsp. jejuni CG8486] Length = 140 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 11/123 (8%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 + +I+V+++ G + L DC LS+ +SPI DVE + G Y LEVSSPG++R + + F + Sbjct: 27 IYRIYVQKE-GGVNLDDCARLSEILSPIFDVEPPVNGEYFLEVSSPGLERKLSKIEHFAK 85 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 G +V +++ +K+K+ KI+ + LE + EK I+F+ + AR Sbjct: 86 SIGELVK----ITTNEKEKIEAKIIAVDDENITLENLENKEK------TTINFNDIKKAR 135 Query: 172 LIV 174 + Sbjct: 136 TFI 138 >gi|34581536|ref|ZP_00143016.1| hypothetical protein [Rickettsia sibirica 246] gi|229586875|ref|YP_002845376.1| hypothetical protein RAF_ORF0746 [Rickettsia africae ESF-5] gi|259586186|sp|C3PNX3|RIMP_RICAE RecName: Full=Ribosome maturation factor rimP gi|28262921|gb|EAA26425.1| unknown [Rickettsia sibirica 246] gi|228021925|gb|ACP53633.1| Unknown [Rickettsia africae ESF-5] Length = 161 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 86/160 (53%), Gaps = 9/160 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVER-DDGNMTLRDCEELSQAISPILDVE 83 I++VI+ + +M F V + +++I ++ + +++ DC + S+ IS ILDVE Sbjct: 8 IANVIEESLTDMGFELVLVKFKGVNPKVVEILIDSLNSEKISVEDCTKASRTISAILDVE 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 ++IE Y LEV+S G++RP+V+ ++ R+ V + K + GKI+ Sbjct: 68 DLIEAAYSLEVASSGLERPLVKFENYNRFLEREVKITLKELLNGKTRYQGKIIKAENNKI 127 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 +L+ E E ++ I +D + +A L++T+E+ + L Sbjct: 128 YLKCE--------EQEVLIDYDLIKNANLVLTEEVFKKLL 159 >gi|262401661|ref|ZP_06078227.1| UPF0090 domain-containing protein [Vibrio sp. RC586] gi|262352078|gb|EEZ01208.1| UPF0090 domain-containing protein [Vibrio sp. RC586] Length = 151 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 58/83 (69%), Gaps = 1/83 (1%) Query: 53 LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRW 112 L+IF++ ++G +T+ DC E+S+ +S +LDVE+ I Y LEVSSPG++RP+ + + + ++ Sbjct: 37 LRIFIDHENG-ITVEDCAEVSRQVSAVLDVEDPISVVYNLEVSSPGLERPLFKPAHYEQF 95 Query: 113 NGHVVACEIVLSSGDKQKLIGKI 135 GH V+ + ++ +++K G I Sbjct: 96 IGHEVSIVLKMAVANRRKWKGII 118 >gi|283955583|ref|ZP_06373077.1| hypothetical protein C1336_000030016 [Campylobacter jejuni subsp. jejuni 1336] gi|283792926|gb|EFC31701.1| hypothetical protein C1336_000030016 [Campylobacter jejuni subsp. jejuni 1336] Length = 140 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 11/123 (8%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 + +I+V+++ G + L DC LS+ +SPI DVE + G Y LEVSSPG++R + + F + Sbjct: 27 IYRIYVQKE-GGVNLDDCARLSEILSPIFDVEPPVNGEYFLEVSSPGLERKLSKIEHFAK 85 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 G +V +++ +K+K KI+ + LE + EK I+F+ + AR Sbjct: 86 SIGELVK----ITANEKEKFEAKIIAVDDENITLENLENKEK------TTINFNDIKKAR 135 Query: 172 LIV 174 V Sbjct: 136 TFV 138 >gi|229019011|ref|ZP_04175853.1| hypothetical protein bcere0030_35250 [Bacillus cereus AH1273] gi|229025257|ref|ZP_04181677.1| hypothetical protein bcere0029_35590 [Bacillus cereus AH1272] gi|228736010|gb|EEL86585.1| hypothetical protein bcere0029_35590 [Bacillus cereus AH1272] gi|228742339|gb|EEL92497.1| hypothetical protein bcere0030_35250 [Bacillus cereus AH1273] Length = 156 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 84/155 (54%), Gaps = 12/155 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + + QP++EE++ V + ++E ++ L++F++ + G + + +C +S+ +S LD E Sbjct: 9 VEAFAQPIVEELNLELVDVEYVQEGQDWFLRVFIDSEKG-VDIEECGAVSERLSEALDKE 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM---GTSE 140 + I Y L+VSSPG +RP+ ++ DF + G VA + ++ GK++ GT+ Sbjct: 68 DPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMFEGKLLSYDGTTI 127 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 T K ++ E I I D + +ARL VT Sbjct: 128 TLLLTIKTRKKE-------IQIPMDKVANARLAVT 155 >gi|15599940|ref|NP_253434.1| hypothetical protein PA4746 [Pseudomonas aeruginosa PAO1] gi|107103845|ref|ZP_01367763.1| hypothetical protein PaerPA_01004916 [Pseudomonas aeruginosa PACS2] gi|116052893|ref|YP_793210.1| hypothetical protein PA14_62780 [Pseudomonas aeruginosa UCBPP-PA14] gi|152986446|ref|YP_001350788.1| hypothetical protein PSPA7_5464 [Pseudomonas aeruginosa PA7] gi|218893841|ref|YP_002442710.1| hypothetical protein PLES_51311 [Pseudomonas aeruginosa LESB58] gi|254238518|ref|ZP_04931841.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|254244352|ref|ZP_04937674.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|296391573|ref|ZP_06881048.1| hypothetical protein PaerPAb_25623 [Pseudomonas aeruginosa PAb1] gi|313109727|ref|ZP_07795667.1| hypothetical protein PA39016_002040024 [Pseudomonas aeruginosa 39016] gi|34223065|sp|Q9HV53|RIMP_PSEAE RecName: Full=Ribosome maturation factor rimP gi|122257096|sp|Q02FS6|RIMP_PSEAB RecName: Full=Ribosome maturation factor rimP gi|167013034|sp|A6VCK3|RIMP_PSEA7 RecName: Full=Ribosome maturation factor rimP gi|226707668|sp|B7V1F8|RIMP_PSEA8 RecName: Full=Ribosome maturation factor rimP gi|9951008|gb|AAG08132.1|AE004888_7 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|115588114|gb|ABJ14129.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14] gi|126170449|gb|EAZ55960.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126197730|gb|EAZ61793.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|150961604|gb|ABR83629.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7] gi|218774069|emb|CAW29885.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58] gi|310882169|gb|EFQ40763.1| hypothetical protein PA39016_002040024 [Pseudomonas aeruginosa 39016] Length = 152 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 67/117 (57%), Gaps = 2/117 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +++ PV+E + + + + + ++ +L+++++R +G + + DCE +S+ +S ILDVE Sbjct: 8 LQALLAPVVEALGYECWGVEFISQGRHSVLRVYIDRPEG-ILIDDCEAVSRQVSGILDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + I G Y LEVSSPG+DRP+ F + G V + ++ G + G E Sbjct: 67 DPISGEYTLEVSSPGMDRPLFTLEQFAKHAGEQVKIRLRSPYEGRRNYQGILRGVEE 123 >gi|331090929|ref|ZP_08339771.1| ribosome maturation factor rimP [Lachnospiraceae bacterium 2_1_46FAA] gi|330405151|gb|EGG84687.1| ribosome maturation factor rimP [Lachnospiraceae bacterium 2_1_46FAA] Length = 155 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 70/133 (52%), Gaps = 2/133 (1%) Query: 31 PVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGH 89 P++EE F V + ++E L+ ++++ G + + DCE +S+A S ILD ++ IE Sbjct: 17 PIVEEHGFELVDVEYVKEGGTWYLRAYIDKP-GGIAVDDCEVVSRAFSDILDEKDYIEDT 75 Query: 90 YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEK 149 Y EVSSPG+ RP+ ++ DF R G V + +++ +G + G + +E E Sbjct: 76 YIFEVSSPGLGRPLKKEKDFARSMGEEVEVRTYRAIDRQKEFVGILKGYDKNTVTIEMED 135 Query: 150 RGEKDMNELQIAI 162 E+ IA+ Sbjct: 136 GSERIFERNDIAL 148 >gi|73662812|ref|YP_301593.1| hypothetical protein SSP1503 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|82582354|sp|Q49X50|RIMP_STAS1 RecName: Full=Ribosome maturation factor rimP gi|72495327|dbj|BAE18648.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 155 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 80/149 (53%), Gaps = 8/149 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++IQPV+ +++F V++ +E K+ L++ ++++ G + L DC S+ IS ++D E Sbjct: 8 VETIIQPVLNDLNFELVEVEFTKEGKDHFLRVSIDKE-GGVDLNDCALASEKISEVMDAE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I+ Y L+V+SPG +RP+ ++ DF V + ++ +G + ET Sbjct: 67 DPIQEMYYLDVASPGAERPIKKEKDFQNAITKPVFVSLYAPIEGSKEWLGILQSVDETNI 126 Query: 144 FLE-KEKRGEKDMNELQIAISFDSLLSAR 171 +E KEK K QI I + + AR Sbjct: 127 VMEVKEKAKTK-----QIEIPRNKIAKAR 150 >gi|148825865|ref|YP_001290618.1| hypothetical protein CGSHiEE_04150 [Haemophilus influenzae PittEE] gi|229846822|ref|ZP_04466929.1| hypothetical protein CGSHi7P49H1_02333 [Haemophilus influenzae 7P49H1] gi|167012908|sp|A5UBT4|RIMP_HAEIE RecName: Full=Ribosome maturation factor rimP gi|148716025|gb|ABQ98235.1| hypothetical protein CGSHiEE_04150 [Haemophilus influenzae PittEE] gi|229810311|gb|EEP46030.1| hypothetical protein CGSHi7P49H1_02333 [Haemophilus influenzae 7P49H1] gi|309973010|gb|ADO96211.1| 30S ribosomal maturation protein RimP [Haemophilus influenzae R2846] Length = 151 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 56/85 (65%), Gaps = 1/85 (1%) Query: 51 LLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFL 110 + +++F+++D G +T+ DC ++S+ +S ILDVE+ I Y LEVSSPG+DRP+ F Sbjct: 35 MTVRLFIDKD-GGVTVDDCADVSRQVSAILDVEDPIADKYNLEVSSPGLDRPLFTLPQFE 93 Query: 111 RWNGHVVACEIVLSSGDKQKLIGKI 135 R+ G +A + + +++K GK+ Sbjct: 94 RYIGQDIAVHLRIPVMERRKWQGKL 118 >gi|167746759|ref|ZP_02418886.1| hypothetical protein ANACAC_01471 [Anaerostipes caccae DSM 14662] gi|167653719|gb|EDR97848.1| hypothetical protein ANACAC_01471 [Anaerostipes caccae DSM 14662] Length = 171 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 70/126 (55%), Gaps = 3/126 (2%) Query: 6 FLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNM 64 F + + + G + ++ P+I+E F V + ++E N L+I+ ++D G + Sbjct: 9 FAQKRRQGNLAGKAEIEQKTEELVTPIIDENHFELVDVEYVKEGANWYLRIYADKD-GGI 67 Query: 65 TLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS 124 ++ DC +S+A+ LD ++ I+ Y LEVSSPG+ RP+ ++ D+ R G V ++ Sbjct: 68 SIDDCVLISRALEAKLDADDFIKDAYILEVSSPGLGRPLKKEKDYQRSIGQSVDIKL-YK 126 Query: 125 SGDKQK 130 + DKQK Sbjct: 127 AIDKQK 132 >gi|90581551|ref|ZP_01237344.1| hypothetical protein VAS14_07344 [Vibrio angustum S14] gi|90437313|gb|EAS62511.1| hypothetical protein VAS14_07344 [Vibrio angustum S14] Length = 151 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 72/120 (60%), Gaps = 2/120 (1%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 L ++ +++P + + + V + + ++ L++F++ ++G + + DC E+S+ IS Sbjct: 3 ALETQLTEMLEPSVLALGYELVGLEFIRAGEHSTLRVFIDHENG-INVDDCAEVSRQISA 61 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 ++DVE+ I Y LEVSSPG++RP+ + + + ++ GH + ++ G+++K G I+ Sbjct: 62 VMDVEDPITVAYNLEVSSPGLERPLFKAAHYQQFVGHEANIVLKMAMGNRRKWKGDIVAV 121 >gi|289423156|ref|ZP_06424971.1| conserved hypothetical protein [Peptostreptococcus anaerobius 653-L] gi|289156487|gb|EFD05137.1| conserved hypothetical protein [Peptostreptococcus anaerobius 653-L] Length = 154 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 65/99 (65%), Gaps = 2/99 (2%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQAISP 78 +A + ++QP+ + F V + ++E + L++ ++ +DG + L +CE++S+ ++P Sbjct: 4 NIAQQVEKLVQPIADLYGFELVDVEYVKEAGIYYLRVIIDSEDG-IGLDECEKVSRDLNP 62 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 ILD +++IE +Y LEV SPGIDR + R ++ +++G +V Sbjct: 63 ILDEKDMIEENYLLEVCSPGIDRILKRDHEYEKYSGKLV 101 >gi|160932905|ref|ZP_02080294.1| hypothetical protein CLOLEP_01746 [Clostridium leptum DSM 753] gi|156867979|gb|EDO61351.1| hypothetical protein CLOLEP_01746 [Clostridium leptum DSM 753] Length = 167 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 72/128 (56%), Gaps = 6/128 (4%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 G + + +P++++ + L+E L+++++R +G +T+ DCE +S+AI Sbjct: 9 GTVEAVWDLCEPIVKDFGLELWDVRYLKEGAQWYLRVYIDRQEG-VTIEDCENVSRAIDE 67 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV--LSSGDKQKLIGKIM 136 LD + ++ Y LEV SPG++R +VR F R+ G V +++ L SG+++ ++ Sbjct: 68 PLDRLDPVDQSYCLEVCSPGLERELVRPEHFQRFEGWPVMVKLIRPLDSGERE--FNGVL 125 Query: 137 GTSETGFF 144 GT E G F Sbjct: 126 GTYENGVF 133 >gi|30995436|ref|NP_439434.2| hypothetical protein HI1282 [Haemophilus influenzae Rd KW20] gi|145633249|ref|ZP_01788980.1| hypothetical protein CGSHi3655_03431 [Haemophilus influenzae 3655] gi|145634373|ref|ZP_01790083.1| hypothetical protein CGSHiAA_06269 [Haemophilus influenzae PittAA] gi|148827022|ref|YP_001291775.1| hypothetical protein CGSHiGG_01570 [Haemophilus influenzae PittGG] gi|229845093|ref|ZP_04465228.1| hypothetical protein CGSHi6P18H1_00035 [Haemophilus influenzae 6P18H1] gi|260581404|ref|ZP_05849218.1| conserved hypothetical protein [Haemophilus influenzae RdAW] gi|260582502|ref|ZP_05850293.1| conserved hypothetical protein [Haemophilus influenzae NT127] gi|329123361|ref|ZP_08251926.1| YhbC family protein [Haemophilus aegyptius ATCC 11116] gi|34223728|sp|P45138|RIMP_HAEIN RecName: Full=Ribosome maturation factor rimP gi|166979796|sp|A5UF36|RIMP_HAEIG RecName: Full=Ribosome maturation factor rimP gi|144986095|gb|EDJ92685.1| hypothetical protein CGSHi3655_03431 [Haemophilus influenzae 3655] gi|145268353|gb|EDK08347.1| hypothetical protein CGSHiAA_06269 [Haemophilus influenzae PittAA] gi|148718264|gb|ABQ99391.1| hypothetical protein CGSHiGG_01570 [Haemophilus influenzae PittGG] gi|229811929|gb|EEP47623.1| hypothetical protein CGSHi6P18H1_00035 [Haemophilus influenzae 6P18H1] gi|260091946|gb|EEW75895.1| conserved hypothetical protein [Haemophilus influenzae RdAW] gi|260094482|gb|EEW78379.1| conserved hypothetical protein [Haemophilus influenzae NT127] gi|327471361|gb|EGF16813.1| YhbC family protein [Haemophilus aegyptius ATCC 11116] Length = 151 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 56/85 (65%), Gaps = 1/85 (1%) Query: 51 LLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFL 110 + +++F+++D G +T+ DC ++S+ +S ILDVE+ I Y LEVSSPG+DRP+ F Sbjct: 35 MTVRLFIDKD-GGVTVDDCADVSRQVSAILDVEDPIADKYNLEVSSPGLDRPLFTLPQFE 93 Query: 111 RWNGHVVACEIVLSSGDKQKLIGKI 135 R+ G +A + + +++K GK+ Sbjct: 94 RYIGQDIAVHLRIPVMERRKWQGKL 118 >gi|145637798|ref|ZP_01793447.1| hypothetical protein CGSHiHH_01594 [Haemophilus influenzae PittHH] gi|145268991|gb|EDK08945.1| hypothetical protein CGSHiHH_01594 [Haemophilus influenzae PittHH] Length = 151 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 56/85 (65%), Gaps = 1/85 (1%) Query: 51 LLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFL 110 + +++F+++D G +T+ DC ++S+ +S ILDVE+ I Y LEVSSPG+DRP+ F Sbjct: 35 MTVRLFIDKD-GGVTVDDCADVSRQVSAILDVEDPIADKYNLEVSSPGLDRPLFTLPQFE 93 Query: 111 RWNGHVVACEIVLSSGDKQKLIGKI 135 R+ G +A + + +++K GK+ Sbjct: 94 RYIGQDIAVHLRIPVMERRKWQGKL 118 >gi|153876665|ref|ZP_02003868.1| Protein of unknown function DUF150 [Beggiatoa sp. PS] gi|152066871|gb|EDN66132.1| Protein of unknown function DUF150 [Beggiatoa sp. PS] Length = 144 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 36/101 (35%), Positives = 58/101 (57%), Gaps = 3/101 (2%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L + ++ P+I + + V + L + LL+++++ G + L DCE +S +S +L Sbjct: 2 LDNQLQQLLAPIIIGLGYELVGVERLS--STLLRVYIDHPKG-INLSDCERVSYQVSGVL 58 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 DV+N I+G Y LEVSSPG DRP+ F R+ GH V + Sbjct: 59 DVQNPIKGRYTLEVSSPGWDRPLFTLEHFKRFVGHKVKVSL 99 >gi|332295449|ref|YP_004437372.1| Ribosome maturation factor rimP [Thermodesulfobium narugense DSM 14796] gi|332178552|gb|AEE14241.1| Ribosome maturation factor rimP [Thermodesulfobium narugense DSM 14796] Length = 159 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 79/145 (54%), Gaps = 9/145 (6%) Query: 27 SVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENI 85 ++++ V+ ++ F + ++ K +L++F++ + ++L DCE +S+ +S ILD ++ Sbjct: 12 NIVEKVLLDIGFELYDLEYFKQGKRWILRVFIDNLEKPISLDDCELVSKKLSAILDYYDL 71 Query: 86 IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFL 145 I + LEVSSPGI+R + + SDF R+ G + ++ + +IG + G G ++ Sbjct: 72 IPESFYLEVSSPGIERKLKKDSDFTRFKGEEII--VIFQKPNISPIIGILEGIDSDGNYI 129 Query: 146 ------EKEKRGEKDMNELQIAISF 164 KEK D+ E++I F Sbjct: 130 IVNTGKSKEKINRNDVKEVRIHFRF 154 >gi|296113982|ref|YP_003627920.1| hypothetical protein MCR_1770 [Moraxella catarrhalis RH4] gi|295921676|gb|ADG62027.1| conserved hypothetical protein [Moraxella catarrhalis RH4] gi|326559306|gb|EGE09733.1| hypothetical protein E9G_09360 [Moraxella catarrhalis 7169] gi|326564318|gb|EGE14548.1| hypothetical protein E9K_04722 [Moraxella catarrhalis 103P14B1] gi|326568243|gb|EGE18325.1| hypothetical protein E9U_09405 [Moraxella catarrhalis BC8] gi|326569944|gb|EGE19991.1| hypothetical protein E9Q_01306 [Moraxella catarrhalis BC1] gi|326570022|gb|EGE20068.1| hypothetical protein E9S_06263 [Moraxella catarrhalis BC7] gi|326573672|gb|EGE23630.1| hypothetical protein EA1_08342 [Moraxella catarrhalis O35E] gi|326574705|gb|EGE24641.1| hypothetical protein E9Y_05110 [Moraxella catarrhalis 101P30B1] Length = 165 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 18/165 (10%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVE-----RDDG-NMTLRDCEELSQA 75 +++ +I P + I + + + LL+I++E R G ++T+ DC ++ Sbjct: 8 AELTELIAPAVAACGVDLWGIEFMPQGRKSLLRIYIESLPENRAAGEHVTIEDCSAVNHQ 67 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV--LSSGD--KQKL 131 +S +LDV + I G Y LEVSSPG DRP+ + + G + ++ + SGD ++K+ Sbjct: 68 VSGVLDVHDPIAGEYVLEVSSPGFDRPLFTREQVAAYVGETINLRLIHAIGSGDTKRRKV 127 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 +G++ E + E ++L+ I+FDS+ A L+ D Sbjct: 128 VGRLTCVGEDSMTVITE-------DKLEFNIAFDSVDKAHLVYED 165 >gi|261253852|ref|ZP_05946425.1| UPF0090 domain-containing protein [Vibrio orientalis CIP 102891] gi|260937243|gb|EEX93232.1| UPF0090 domain-containing protein [Vibrio orientalis CIP 102891] Length = 151 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 58/83 (69%), Gaps = 1/83 (1%) Query: 53 LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRW 112 L+IF++ ++G + + DC E+S+ +S ++DVE+ I Y LEVSSPG++RP+ + + + ++ Sbjct: 37 LRIFIDHENG-INVDDCAEVSRQVSAVMDVEDPITVAYNLEVSSPGLERPLFKAAHYEQF 95 Query: 113 NGHVVACEIVLSSGDKQKLIGKI 135 GH V+ + ++ G+++K G I Sbjct: 96 IGHEVSIVLKMAVGNRRKWKGVI 118 >gi|170765477|ref|ZP_02900288.1| conserved hypothetical protein [Escherichia albertii TW07627] gi|170124623|gb|EDS93554.1| conserved hypothetical protein [Escherichia albertii TW07627] Length = 150 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 63/111 (56%), Gaps = 1/111 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I +E + F V I + + L+I+++ +DG + + DC ++S +S +LDVE+ Sbjct: 8 LTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVED 66 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I Y LEVSSPG+DRP+ + R+ G + ++ +++K G I Sbjct: 67 PITVAYNLEVSSPGLDRPLFTAEHYARFVGEEATLVLRMAVQNRRKWQGVI 117 >gi|254721997|ref|ZP_05183786.1| hypothetical protein BantA1_05952 [Bacillus anthracis str. A1055] Length = 156 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 84/155 (54%), Gaps = 12/155 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + + QP++EE++ V + ++E ++ L++F++ + G + + +C +S+ +S LD E Sbjct: 9 VEAFAQPIVEELNLEFVDVEYVKEGQDWFLRVFIDSEKG-VDIEECGAVSERLSEALDKE 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM---GTSE 140 + I Y L+VSSPG +RP+ ++ DF + G VA + ++ GK++ GT+ Sbjct: 68 DPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMFEGKMLSYDGTTI 127 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 T K ++ E I I D + +ARL VT Sbjct: 128 TLLLTIKTRKKE-------IQIPMDKVANARLAVT 155 >gi|85712988|ref|ZP_01044026.1| Alpha-hemolysin-like protein, hlyA family protein [Idiomarina baltica OS145] gi|85693157|gb|EAQ31117.1| Alpha-hemolysin-like protein, hlyA family protein [Idiomarina baltica OS145] Length = 167 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 67/114 (58%), Gaps = 2/114 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 +S +++P +E + F I + K L+I++++++G +++ DC ++S +S +LDVE Sbjct: 23 LSDMLRPAVEALGFELWGIEFVRAGKFSTLRIYIDKEEG-ISVDDCADVSYQVSSVLDVE 81 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 + I Y LEVSSPG++RP + + G VA E+ ++ +K+K + G Sbjct: 82 DPINTEYNLEVSSPGMERPFFSIAQMQPYIGETVAFELTVAKQNKRKFQAVLEG 135 >gi|326572880|gb|EGE22865.1| hypothetical protein E9W_08250 [Moraxella catarrhalis CO72] Length = 165 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 18/165 (10%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVE-----RDDG-NMTLRDCEELSQA 75 +++ +I P + I + + + LL+I++E R G ++T+ DC ++ Sbjct: 8 AELTELITPAVAACGVDLWGIEFMPQGRKSLLRIYIESLPENRAAGEHVTIEDCSAVNHQ 67 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV--LSSGD--KQKL 131 +S +LDV + I G Y LEVSSPG DRP+ + + G + ++ + SGD ++K+ Sbjct: 68 VSGVLDVHDPIAGEYVLEVSSPGFDRPLFTREQVAAYVGETINLRLIHAIGSGDTKRRKV 127 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 +G++ E + E ++L+ I+FDS+ A L+ D Sbjct: 128 VGRLTCVGEDSMTVITE-------DKLEFNIAFDSVDKAHLVYED 165 >gi|227357077|ref|ZP_03841447.1| YhbC family protein [Proteus mirabilis ATCC 29906] gi|227162769|gb|EEI47732.1| YhbC family protein [Proteus mirabilis ATCC 29906] Length = 170 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 75/129 (58%), Gaps = 5/129 (3%) Query: 11 YEPRIF----GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTL 66 Y+P + G L +++++ +E + F V + + + L+I+++ ++G +T+ Sbjct: 10 YKPFFYALGVGLSTLEQKLTAMVSAPVEALGFEFVGLEFIRGRVSTLRIYIDSEEG-ITV 68 Query: 67 RDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 DC ++S +S +LDVE+ I+ Y LE+SSPG++RP+ + + ++ G VA + ++ Sbjct: 69 DDCADVSHQVSAVLDVEDPIQTFYNLEISSPGLERPLFTTTHYEQFIGEEVAVVLRIAMQ 128 Query: 127 DKQKLIGKI 135 +++K G I Sbjct: 129 NRRKWQGII 137 >gi|145630837|ref|ZP_01786615.1| hypothetical protein CGSHi22421_10572 [Haemophilus influenzae R3021] gi|144983719|gb|EDJ91179.1| hypothetical protein CGSHi22421_10572 [Haemophilus influenzae R3021] Length = 151 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 56/85 (65%), Gaps = 1/85 (1%) Query: 51 LLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFL 110 + +++F+++D G +T+ DC ++S+ +S ILDVE+ I Y LEVSSPG+DRP+ F Sbjct: 35 ITVRLFIDKD-GGVTVDDCADVSRQVSAILDVEDPIADKYNLEVSSPGLDRPLFTLPQFE 93 Query: 111 RWNGHVVACEIVLSSGDKQKLIGKI 135 R+ G +A + + +++K GK+ Sbjct: 94 RYIGQDIAVHLRIPVMERRKWQGKL 118 >gi|319896983|ref|YP_004135178.1| hypothetical protein HIBPF06790 [Haemophilus influenzae F3031] gi|317432487|emb|CBY80844.1| conserved hypothetical protein [Haemophilus influenzae F3031] Length = 141 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 56/85 (65%), Gaps = 1/85 (1%) Query: 51 LLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFL 110 + +++F+++D G +T+ DC ++S+ +S ILDVE+ I Y LEVSSPG+DRP+ F Sbjct: 25 MTVRLFIDKD-GGVTVDDCADVSRQVSAILDVEDPIADKYNLEVSSPGLDRPLFTLPQFE 83 Query: 111 RWNGHVVACEIVLSSGDKQKLIGKI 135 R+ G +A + + +++K GK+ Sbjct: 84 RYIGQDIAVHLRIPVMERRKWQGKL 108 >gi|270265057|ref|ZP_06193320.1| putative cytoplasmic protein [Serratia odorifera 4Rx13] gi|270040991|gb|EFA14092.1| putative cytoplasmic protein [Serratia odorifera 4Rx13] Length = 150 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 65/115 (56%), Gaps = 1/115 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ ++ +E + F V I + + L+I+++ ++G + + DC ++S +S +L Sbjct: 4 LEQKLTEMLSAPVEALGFELVGIEFIRARQSTLRIYIDSENG-INVDDCADVSHQVSAVL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 DVE I Y LEVSSPG+DRPM + R+ G V+ + ++ +++K G I Sbjct: 63 DVEEPITVAYNLEVSSPGLDRPMFTAEHYTRFLGEEVSLVLRMAVQNRRKWQGII 117 >gi|332290218|ref|YP_004421070.1| hypothetical protein UMN179_02160 [Gallibacterium anatis UMN179] gi|330433114|gb|AEC18173.1| hypothetical protein UMN179_02160 [Gallibacterium anatis UMN179] Length = 153 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 68/113 (60%), Gaps = 2/113 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++QP +E+M F + I + +++++++++G +T+ DC ++S+ + ILDVE Sbjct: 8 LQDLLQPTVEDMGFELLGIECTRAGRYSTVRLYIDKENG-VTIDDCSDVSREVGAILDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 + I Y LEVSSPG+DRP+ + + R+ G V + ++ ++K G ++ Sbjct: 67 DPISDKYNLEVSSPGLDRPLFTLAHYQRFVGEEVVIHLRIAMSGRRKWQGDLI 119 >gi|218898969|ref|YP_002447380.1| hypothetical protein BCG9842_B1329 [Bacillus cereus G9842] gi|226695927|sp|B7IUH5|RIMP_BACC2 RecName: Full=Ribosome maturation factor rimP gi|218540973|gb|ACK93367.1| conserved hypothetical protein [Bacillus cereus G9842] gi|326941583|gb|AEA17479.1| hypothetical protein CT43_CH3814 [Bacillus thuringiensis serovar chinensis CT-43] Length = 156 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 84/155 (54%), Gaps = 12/155 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + + QP++EE++ V + ++E ++ L++F++ + G + + +C +S+ +S LD E Sbjct: 9 VEAFAQPIVEELNLELVDVEYVKEGQDWFLRVFIDSEKG-VDIEECGAVSERLSEALDKE 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM---GTSE 140 + I Y L+VSSPG +RP+ ++ DF + G VA + ++ GK++ GT+ Sbjct: 68 DPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMFEGKLLSYDGTTI 127 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 T K ++ E I I D + +ARL VT Sbjct: 128 TLLLTIKTRKKE-------IQIPMDKVANARLAVT 155 >gi|291616008|ref|YP_003518750.1| YhbC [Pantoea ananatis LMG 20103] gi|291151038|gb|ADD75622.1| YhbC [Pantoea ananatis LMG 20103] gi|327396259|dbj|BAK13681.1| hypothetical UPF0090 protein YhbC [Pantoea ananatis AJ13355] Length = 154 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 65/111 (58%), Gaps = 1/111 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ ++ +E + + V I + + L+I+++ +DG + + DC ++S +S ++DVE+ Sbjct: 12 LTELVSAPVEALGYELVGIEFVRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVMDVED 70 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I Y LEVSSPG+DRP+ + R+ G V+ + ++ +++K G I Sbjct: 71 PITVPYHLEVSSPGLDRPLFTAEHYARFTGDEVSLVLRMAVQNRRKWQGII 121 >gi|121613126|ref|YP_999862.1| hypothetical protein CJJ81176_0173 [Campylobacter jejuni subsp. jejuni 81-176] gi|167004833|ref|ZP_02270591.1| hypothetical protein Cjejjejuni_00785 [Campylobacter jejuni subsp. jejuni 81-176] gi|166980215|sp|A1VXM1|RIMP_CAMJJ RecName: Full=Ribosome maturation factor rimP gi|87250144|gb|EAQ73102.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni 81-176] Length = 140 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 67/123 (54%), Gaps = 11/123 (8%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 + +I+V+++ G + L DC LS+ +SPI DVE + G Y LEVSSPG++R + + F + Sbjct: 27 IYRIYVQKE-GGVNLDDCARLSEILSPIFDVEPPVNGEYFLEVSSPGLERKLSKIEHFAK 85 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 G +V +++ +K+K KI+ + LE + EK I+F+ + AR Sbjct: 86 SIGELVK----ITTNEKEKFEAKIIAVDDENITLENLENKEK------TTINFNDIKKAR 135 Query: 172 LIV 174 + Sbjct: 136 TFI 138 >gi|319776226|ref|YP_004138714.1| hypothetical protein HICON_18130 [Haemophilus influenzae F3047] gi|1574740|gb|AAC22931.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] gi|317450817|emb|CBY87039.1| conserved hypothetical protein [Haemophilus influenzae F3047] Length = 141 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 56/85 (65%), Gaps = 1/85 (1%) Query: 51 LLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFL 110 + +++F+++D G +T+ DC ++S+ +S ILDVE+ I Y LEVSSPG+DRP+ F Sbjct: 25 MTVRLFIDKD-GGVTVDDCADVSRQVSAILDVEDPIADKYNLEVSSPGLDRPLFTLPQFE 83 Query: 111 RWNGHVVACEIVLSSGDKQKLIGKI 135 R+ G +A + + +++K GK+ Sbjct: 84 RYIGQDIAVHLRIPVMERRKWQGKL 108 >gi|169827164|ref|YP_001697322.1| hypothetical protein Bsph_1594 [Lysinibacillus sphaericus C3-41] gi|226734725|sp|B1HR01|RIMP_LYSSC RecName: Full=Ribosome maturation factor rimP gi|168991652|gb|ACA39192.1| UPF0090 protein [Lysinibacillus sphaericus C3-41] Length = 156 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 38/151 (25%), Positives = 80/151 (52%), Gaps = 5/151 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I + +P+++E++ V I ++E +N L+++V+ +G + + C ++S+ +S +LD + Sbjct: 8 IEELAKPIVDELNLELVDIEFVKEGRNWFLRVYVDTPEGGIDIDQCAQVSERLSLLLDEK 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I +Y LEVSSPG +RP+ + +DF + G + + D ++ G + E Sbjct: 68 DPITQNYYLEVSSPGAERPLKKDADFEKAIGKFIYVKTYKPIKDMKEFQGYLTSYEEHTL 127 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + K + + I + + ARL + Sbjct: 128 VMEVRIKTRK----ITVTIEQEKIALARLAI 154 >gi|19705319|ref|NP_602814.1| putative cytoplasmic protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|34223125|sp|Q8RHJ4|RIMP_FUSNN RecName: Full=Ribosome maturation factor rimP gi|19713290|gb|AAL94113.1| Hypothetical cytosolic protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 156 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 78/141 (55%), Gaps = 8/141 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I+ ++ P IEEM+ V + +++ ++IF+E +G++ + DC +LS I VE Sbjct: 11 ITRIVNPFIEEMNLSLVDVEYVQDGGYWYVRIFIENLNGDLNIEDCSKLSSKIED--KVE 68 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK---LIGKIMGTSE 140 +IE + LEVSSPG++RP+ + D+ R+ G + + DK++ +I ++ G + Sbjct: 69 ELIEHKFFLEVSSPGLERPLKKLEDYTRFIGEKITLHLKHKLDDKKQFKTIIKEVNG--D 126 Query: 141 TGFFLEKEKRGEKDMNELQIA 161 FL +K E NE++ A Sbjct: 127 NIIFLMDKKEVEIKFNEIRKA 147 >gi|254521461|ref|ZP_05133516.1| conserved hypothetical protein [Stenotrophomonas sp. SKA14] gi|219719052|gb|EED37577.1| conserved hypothetical protein [Stenotrophomonas sp. SKA14] Length = 196 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 83/162 (51%), Gaps = 20/162 (12%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFV-----ERDDGNMTLRDCEELSQA 75 A DI++++ P + + + + L L++++ E+ + + + DCE +S+ Sbjct: 5 ATDIANLLAPTVVSLGLELLGVEYLPAPGGATLRLYIDVPLAEQPERIINVDDCERVSRE 64 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +DVE+ I G+Y LEVSSPG+DRP+ F R G + + L ++++L G+I Sbjct: 65 VSAQMDVEDPISGNYTLEVSSPGVDRPLFNLEQFGRHLGEMAKVTLKLPQDNRRRLQGRI 124 Query: 136 MGTSETG----FFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 T E F ++K ++ +S D++ AR++ Sbjct: 125 EATDEAADTITFVVDK----------TEVIVSADNIDKARIM 156 >gi|154506275|ref|ZP_02043013.1| hypothetical protein RUMGNA_03817 [Ruminococcus gnavus ATCC 29149] gi|153793414|gb|EDN75834.1| hypothetical protein RUMGNA_03817 [Ruminococcus gnavus ATCC 29149] Length = 155 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 63/107 (58%), Gaps = 2/107 (1%) Query: 28 VIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 +++P++ E F V + ++E N L+ ++++ G +T+ DCE +S+ S ILD ++ I Sbjct: 14 LLEPIVAEQGFELVDVEYVKEAGNWYLRAYIDKP-GGITVDDCEVVSRRFSDILDEKDYI 72 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 E Y EVSSPG+ RP+ ++ DF+R G V + +++ +G Sbjct: 73 EDSYIFEVSSPGLGRPLKKEKDFIRSVGQEVEIRTYRAINRQKEFVG 119 >gi|237757009|ref|ZP_04585464.1| conserved hypothetical protein [Sulfurihydrogenibium yellowstonense SS-5] gi|237690827|gb|EEP59980.1| conserved hypothetical protein [Sulfurihydrogenibium yellowstonense SS-5] Length = 147 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 81/154 (52%), Gaps = 9/154 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 M + + ++ P++EE F+ V I + K +L+I++ +G ++ DCE +S+ I Sbjct: 1 MKVEEKVKELLLPILEERDFKLVDIEFIPSKRPILRIYIYNPEGT-SIDDCEWVSKRIGA 59 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LDVE++I+ Y LEVSSPG+DR ++ + G V + +K+ G ++G Sbjct: 60 LLDVEDLIDKAYILEVSSPGLDRKFKNIEEYDIFKGRDVVIKTKEPINEKKVFKGTLLG- 118 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 LE EK K+ NE + I +++ +L Sbjct: 119 ------LEDEKVKIKE-NEETVEIPLENVSQTKL 145 >gi|320540175|ref|ZP_08039830.1| putative conserved protein [Serratia symbiotica str. Tucson] gi|320029841|gb|EFW11865.1| putative conserved protein [Serratia symbiotica str. Tucson] Length = 156 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 60/103 (58%), Gaps = 1/103 (0%) Query: 33 IEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRL 92 +E + F V I + + L+I+++ ++G + + DC ++S +S +LDVE I Y L Sbjct: 22 VEALGFEFVGIEFIRARQSTLRIYIDSENG-INVDDCADVSHQVSAVLDVEEPIAVAYNL 80 Query: 93 EVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 EVSSPG+DRPM + R+ G V+ + ++ +++K G I Sbjct: 81 EVSSPGLDRPMFTAEHYTRFLGEEVSLVLRMAVQNRRKWQGII 123 >gi|257452236|ref|ZP_05617535.1| putative cytoplasmic protein [Fusobacterium sp. 3_1_5R] gi|317058779|ref|ZP_07923264.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R] gi|313684455|gb|EFS21290.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R] Length = 153 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 9/140 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I ++ P EE+ V + +++ ++++VE+ +G++ L DC LS I +D Sbjct: 8 IEKIVIPAAEELGLSLVDVEYMQDGGYWYVRVYVEKLEGDVNLEDCASLSGKIEDAVD-- 65 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +I+ + LEVSSPGI+RP+ ++SDF+R+ G + + +K+ + G + Sbjct: 66 QLIDKKFFLEVSSPGIERPLKKESDFIRFTGEKIFVALKHKLNEKRNIEGILRAYENQSL 125 Query: 144 FLEKEKRGEKDMNELQIAIS 163 L E D ELQI S Sbjct: 126 LL------EVDGEELQIPFS 139 >gi|153952308|ref|YP_001397397.1| hypothetical protein JJD26997_0151 [Campylobacter jejuni subsp. doylei 269.97] gi|166979754|sp|A7H1L7|RIMP_CAMJD RecName: Full=Ribosome maturation factor rimP gi|152939754|gb|ABS44495.1| protein Tmden_0678 [Campylobacter jejuni subsp. doylei 269.97] Length = 140 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 67/120 (55%), Gaps = 11/120 (9%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 + +I+V+++ G + L DC LS+ +SPI DVE + G Y LEVSSPG++R + + F + Sbjct: 27 IYRIYVQKE-GGVNLDDCARLSEILSPIFDVEPPVNGEYFLEVSSPGLERKLSKIEHFAK 85 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 G +V +++ +K+K+ KI+ + LE + EK I+F+ + AR Sbjct: 86 SIGELVK----ITTNEKEKIEAKIIAVDDENITLENLENKEK------TTINFNDIKKAR 135 >gi|259586207|sp|A8G905|RIMP_SERP5 RecName: Full=Ribosome maturation factor rimP Length = 152 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 68/120 (56%), Gaps = 4/120 (3%) Query: 19 MGLAG---DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 MGL+ ++ ++ +E + F V I + + L+I+++ ++G + + DC ++S Sbjct: 1 MGLSTLEQKLTEMLSAPVEALGFELVGIEFIRARQSTLRIYIDSENG-INVDDCADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE I Y LEVSSPG+DRPM + R+ G V+ + ++ +++K G I Sbjct: 60 VSAVLDVEEPITVAYNLEVSSPGLDRPMFTAEHYTRFLGDEVSLVLRMAVQNRRKWQGII 119 >gi|30263820|ref|NP_846197.1| hypothetical protein BA_3954 [Bacillus anthracis str. Ames] gi|42782905|ref|NP_980152.1| hypothetical protein BCE_3855 [Bacillus cereus ATCC 10987] gi|47529244|ref|YP_020593.1| hypothetical protein GBAA_3954 [Bacillus anthracis str. 'Ames Ancestor'] gi|47569094|ref|ZP_00239783.1| YlxS-like protein [Bacillus cereus G9241] gi|49186667|ref|YP_029919.1| hypothetical protein BAS3668 [Bacillus anthracis str. Sterne] gi|49478391|ref|YP_037878.1| hypothetical protein BT9727_3558 [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141671|ref|YP_085158.1| hypothetical protein BCZK3576 [Bacillus cereus E33L] gi|165872607|ref|ZP_02217238.1| conserved hypothetical protein [Bacillus anthracis str. A0488] gi|167635806|ref|ZP_02394115.1| conserved hypothetical protein [Bacillus anthracis str. A0442] gi|167639838|ref|ZP_02398107.1| conserved hypothetical protein [Bacillus anthracis str. A0193] gi|170687819|ref|ZP_02879033.1| conserved hypothetical protein [Bacillus anthracis str. A0465] gi|170706785|ref|ZP_02897243.1| conserved hypothetical protein [Bacillus anthracis str. A0389] gi|177652089|ref|ZP_02934635.1| conserved hypothetical protein [Bacillus anthracis str. A0174] gi|190568460|ref|ZP_03021367.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I] gi|196036915|ref|ZP_03104299.1| conserved hypothetical protein [Bacillus cereus W] gi|196042165|ref|ZP_03109448.1| conserved hypothetical protein [Bacillus cereus NVH0597-99] gi|196044678|ref|ZP_03111913.1| conserved hypothetical protein [Bacillus cereus 03BB108] gi|206978439|ref|ZP_03239306.1| conserved hypothetical protein [Bacillus cereus H3081.97] gi|217961237|ref|YP_002339805.1| hypothetical protein BCAH187_A3864 [Bacillus cereus AH187] gi|218904945|ref|YP_002452779.1| hypothetical protein BCAH820_3829 [Bacillus cereus AH820] gi|222097261|ref|YP_002531318.1| hypothetical protein BCQ_3601 [Bacillus cereus Q1] gi|225865796|ref|YP_002751174.1| hypothetical protein BCA_3913 [Bacillus cereus 03BB102] gi|227813275|ref|YP_002813284.1| hypothetical protein BAMEG_0677 [Bacillus anthracis str. CDC 684] gi|229603147|ref|YP_002868055.1| hypothetical protein BAA_3978 [Bacillus anthracis str. A0248] gi|254683476|ref|ZP_05147336.1| hypothetical protein BantC_06445 [Bacillus anthracis str. CNEVA-9066] gi|254735855|ref|ZP_05193561.1| hypothetical protein BantWNA_11921 [Bacillus anthracis str. Western North America USA6153] gi|254739619|ref|ZP_05197313.1| hypothetical protein BantKB_01112 [Bacillus anthracis str. Kruger B] gi|254756008|ref|ZP_05208039.1| hypothetical protein BantV_26379 [Bacillus anthracis str. Vollum] gi|254759331|ref|ZP_05211356.1| hypothetical protein BantA9_13571 [Bacillus anthracis str. Australia 94] gi|301055307|ref|YP_003793518.1| nus operon associated protein [Bacillus anthracis CI] gi|34222814|sp|Q81WL9|RIMP_BACAN RecName: Full=Ribosome maturation factor rimP gi|51316695|sp|Q732Q5|RIMP_BACC1 RecName: Full=Ribosome maturation factor rimP gi|81395111|sp|Q6HEZ8|RIMP_BACHK RecName: Full=Ribosome maturation factor rimP gi|81686585|sp|Q636K9|RIMP_BACCZ RecName: Full=Ribosome maturation factor rimP gi|226706060|sp|B7JJ95|RIMP_BACC0 RecName: Full=Ribosome maturation factor rimP gi|226706064|sp|B7HLF0|RIMP_BACC7 RecName: Full=Ribosome maturation factor rimP gi|254765081|sp|B9IVA5|RIMP_BACCQ RecName: Full=Ribosome maturation factor rimP gi|254803820|sp|C1EP39|RIMP_BACC3 RecName: Full=Ribosome maturation factor rimP gi|254803830|sp|C3P5L9|RIMP_BACAA RecName: Full=Ribosome maturation factor rimP gi|254806572|sp|C3L7B0|RIMP_BACAC RecName: Full=Ribosome maturation factor rimP gi|259585701|sp|A0RHI8|RIMP_BACAH RecName: Full=Ribosome maturation factor rimP gi|30258464|gb|AAP27683.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gi|42738832|gb|AAS42760.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gi|47504392|gb|AAT33068.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames Ancestor'] gi|47554256|gb|EAL12618.1| YlxS-like protein [Bacillus cereus G9241] gi|49180594|gb|AAT55970.1| conserved hypothetical protein [Bacillus anthracis str. Sterne] gi|49329947|gb|AAT60593.1| conserved hypothetical protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51975140|gb|AAU16690.1| conserved hypothetical protein [Bacillus cereus E33L] gi|164711639|gb|EDR17185.1| conserved hypothetical protein [Bacillus anthracis str. A0488] gi|167512239|gb|EDR87616.1| conserved hypothetical protein [Bacillus anthracis str. A0193] gi|167528763|gb|EDR91521.1| conserved hypothetical protein [Bacillus anthracis str. A0442] gi|170128203|gb|EDS97072.1| conserved hypothetical protein [Bacillus anthracis str. A0389] gi|170668135|gb|EDT18884.1| conserved hypothetical protein [Bacillus anthracis str. A0465] gi|172082458|gb|EDT67523.1| conserved hypothetical protein [Bacillus anthracis str. A0174] gi|190560464|gb|EDV14442.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I] gi|195990470|gb|EDX54454.1| conserved hypothetical protein [Bacillus cereus W] gi|196024713|gb|EDX63385.1| conserved hypothetical protein [Bacillus cereus 03BB108] gi|196027017|gb|EDX65641.1| conserved hypothetical protein [Bacillus cereus NVH0597-99] gi|206743354|gb|EDZ54794.1| conserved hypothetical protein [Bacillus cereus H3081.97] gi|217067014|gb|ACJ81264.1| conserved hypothetical protein [Bacillus cereus AH187] gi|218536944|gb|ACK89342.1| conserved hypothetical protein [Bacillus cereus AH820] gi|221241319|gb|ACM14029.1| conserved hypothetical protein [Bacillus cereus Q1] gi|225790678|gb|ACO30895.1| conserved hypothetical protein [Bacillus cereus 03BB102] gi|227005285|gb|ACP15028.1| conserved hypothetical protein [Bacillus anthracis str. CDC 684] gi|229267555|gb|ACQ49192.1| conserved hypothetical protein [Bacillus anthracis str. A0248] gi|300377476|gb|ADK06380.1| protein associated with nus operon [Bacillus cereus biovar anthracis str. CI] gi|324327711|gb|ADY22971.1| ribosome maturation protein RimP [Bacillus thuringiensis serovar finitimus YBT-020] Length = 156 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 84/155 (54%), Gaps = 12/155 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + + QP++EE++ V + ++E ++ L++F++ + G + + +C +S+ +S LD E Sbjct: 9 VEAFAQPIVEELNLELVDVEYVKEGQDWFLRVFIDSEKG-VDIEECGAVSERLSEALDKE 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM---GTSE 140 + I Y L+VSSPG +RP+ ++ DF + G VA + ++ GK++ GT+ Sbjct: 68 DPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMFEGKMLSYDGTTI 127 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 T K ++ E I I D + +ARL VT Sbjct: 128 TLLLTIKTRKKE-------IQIPMDKVANARLAVT 155 >gi|294788743|ref|ZP_06753984.1| 15 kDa protein [Simonsiella muelleri ATCC 29453] gi|294483225|gb|EFG30911.1| 15 kDa protein [Simonsiella muelleri ATCC 29453] Length = 145 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 65/112 (58%), Gaps = 5/112 (4%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI +++ + + + V L + L ++F++ + G +T+ DC +S +S + VE Sbjct: 2 DIQTILDTTLPGLGYELVDFELTAQGTL--RVFIDTE-GGITVEDCANVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 N+ + LE+SSPG+DRP+ + SDF+R++G +V + L ++ IGKI Sbjct: 59 NV--DYKNLEISSPGLDRPLKKASDFVRFSGSLVKIKTRLPIDGQKNFIGKI 108 >gi|261820126|ref|YP_003258232.1| hypothetical protein Pecwa_0806 [Pectobacterium wasabiae WPP163] gi|261604139|gb|ACX86625.1| protein of unknown function DUF150 [Pectobacterium wasabiae WPP163] Length = 140 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 62/107 (57%), Gaps = 1/107 (0%) Query: 29 IQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEG 88 I + + + V I + + L+I+++ +DG +T+ DC ++S +S +LDVE+ I Sbjct: 2 ISAPVAALGYELVGIEFIRSRQSTLRIYIDSEDG-ITVDDCADVSHQVSAVLDVEDPITV 60 Query: 89 HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 Y LEVSSPG++RP+ +L + G V + ++ +++K +G I Sbjct: 61 AYNLEVSSPGLERPLFTAEHYLHFIGEEVTVVLRMAVQNRRKWLGVI 107 >gi|291536068|emb|CBL09180.1| Uncharacterized protein conserved in bacteria [Roseburia intestinalis M50/1] gi|291538563|emb|CBL11674.1| Uncharacterized protein conserved in bacteria [Roseburia intestinalis XB6B4] Length = 155 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 36/136 (26%), Positives = 74/136 (54%), Gaps = 2/136 (1%) Query: 28 VIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 +I P+++ M+F V + ++E L+ +++++ G +T+ DCE +++ ++ ILD E+ + Sbjct: 14 LITPILDRMNFELVDVEYVKEGGTWYLRAYIDKE-GGITVNDCEAVAREMNEILDREDFV 72 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE 146 E Y EVSSPG+ RP+ ++ D++R G V + +++ G + E ++ Sbjct: 73 EDSYVFEVSSPGLGRPLKKEKDYIRSMGKEVEIRTYRAINREKEFYGILSAYDENTVTIK 132 Query: 147 KEKRGEKDMNELQIAI 162 E E + IA+ Sbjct: 133 TEDGTEMTFEKSDIAL 148 >gi|283788202|ref|YP_003368067.1| hypothetical protein ROD_46621 [Citrobacter rodentium ICC168] gi|282951656|emb|CBG91356.1| conserved hypothetical protein [Citrobacter rodentium ICC168] Length = 154 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 65/111 (58%), Gaps = 1/111 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I +E + + V I + + L+I+++ +DG + + DC ++S +S ++DVE+ Sbjct: 12 LTEMITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVMDVED 70 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I Y LEVSSPG+DRP+ + R+ G V+ + ++ +++K G I Sbjct: 71 PITVAYNLEVSSPGLDRPLFTAEHYARFLGEEVSLVLRMAVQNRRKWQGVI 121 >gi|170717518|ref|YP_001784610.1| hypothetical protein HSM_1288 [Haemophilus somnus 2336] gi|226695902|sp|B0UU11|RIMP_HAES2 RecName: Full=Ribosome maturation factor rimP gi|168825647|gb|ACA31018.1| protein of unknown function DUF150 [Haemophilus somnus 2336] Length = 153 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 65/116 (56%), Gaps = 1/116 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQAISPI 79 L + ++QP +E++ I +++++++ DG +T+ DC ++S+ +S + Sbjct: 4 LEDKLQELLQPSVEDLGCELWGIECQRSGRFFTVRLYIDKKDGGVTVDDCADVSRQVSAV 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LDVE+ I Y LEVSSPG++RP+ F + G ++ + + D++K GK+ Sbjct: 64 LDVEDPIADKYNLEVSSPGLNRPLFTLKQFENYIGQDISVHLRVPMFDRRKWQGKL 119 >gi|260887248|ref|ZP_05898511.1| putative cytoplasmic protein [Selenomonas sputigena ATCC 35185] gi|330838994|ref|YP_004413574.1| Ribosome maturation factor rimP [Selenomonas sputigena ATCC 35185] gi|260863310|gb|EEX77810.1| putative cytoplasmic protein [Selenomonas sputigena ATCC 35185] gi|329746758|gb|AEC00115.1| Ribosome maturation factor rimP [Selenomonas sputigena ATCC 35185] Length = 150 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 29/113 (25%), Positives = 66/113 (58%), Gaps = 1/113 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + +++Q ++++ + V + ++E++ L+++++++ G + + DC+ +S+ + ILD ++ Sbjct: 9 VEAIVQEIVQDSNLEVVDVEYVKERDWYLRVYLDKE-GGIEIDDCQRVSETLEQILDEKD 67 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++ Y LEVSSPG+DR + + DF R G V K+ +G + G Sbjct: 68 LLTEAYILEVSSPGLDRVLKKARDFEREQGKAVDVTFYAPVDGKKTWVGTLTG 120 >gi|320186659|gb|EFW61383.1| hypothetical protein SGF_01107 [Shigella flexneri CDC 796-83] gi|332090719|gb|EGI95813.1| hypothetical protein SB359474_3714 [Shigella boydii 3594-74] Length = 140 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 1/107 (0%) Query: 29 IQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEG 88 I +E + F V I + L+I+++ +DG + + DC ++S +S +LDVE+ I Sbjct: 2 ITAPVEALGFELVGIEFIRGHTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVEDPITV 60 Query: 89 HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 Y LEVSSPG+DRP+ + R+ G V + ++ +++K G I Sbjct: 61 AYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 107 >gi|293393155|ref|ZP_06637470.1| conserved hypothetical protein [Serratia odorifera DSM 4582] gi|291424301|gb|EFE97515.1| conserved hypothetical protein [Serratia odorifera DSM 4582] Length = 187 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 66/115 (57%), Gaps = 1/115 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ ++ +E + F V I + + L+I+++ ++G + + DC ++S +S +L Sbjct: 41 LEQKLTEMLSAPVEALGFELVGIEFIRARQSTLRIYIDSENG-INVDDCADVSHQVSAVL 99 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 DVE+ + Y LEVSSPG+DRPM + R+ G V+ + ++ +++K G I Sbjct: 100 DVEDPVTVAYNLEVSSPGLDRPMFTAEHYTRFLGEEVSLVLRMAVQNRRKWQGII 154 >gi|84778873|dbj|BAE73650.1| conserved hypothetical protein [Sodalis glossinidius str. 'morsitans'] Length = 140 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 62/103 (60%), Gaps = 1/103 (0%) Query: 33 IEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRL 92 +E + F V I + + L+I++ D+G +T+ DC ++S +S +LDVE+ I Y L Sbjct: 6 VEALGFELVGIEFIRGRQSTLRIYINSDEG-ITVDDCADVSHQVSAVLDVEDPISVAYSL 64 Query: 93 EVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 EVSSPG+DRP+ + + ++ G V+ + ++ +++K G I Sbjct: 65 EVSSPGLDRPLFTAAHYRQFIGSDVSVVLRIAVQNRRKWQGII 107 >gi|325267088|ref|ZP_08133757.1| protein of hypothetical function DUF150 [Kingella denitrificans ATCC 33394] gi|324981441|gb|EGC17084.1| protein of hypothetical function DUF150 [Kingella denitrificans ATCC 33394] Length = 145 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 67/112 (59%), Gaps = 5/112 (4%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 D+ +++ + M + V + L + +L++F++++ G +T+ DC +S +S + VE Sbjct: 2 DLQQILETTLPGMGYELVDVELTAQG--ILRVFIDKE-GGITVEDCATVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 ++ H LE+SSPG+DRP+ + +DF+R+ G +V + L ++ IG+I Sbjct: 59 DVDYKH--LEISSPGLDRPLKKAADFVRFTGSMVKLKTRLPVDGQKNFIGRI 108 >gi|261867878|ref|YP_003255800.1| hypothetical protein D11S_1199 [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413210|gb|ACX82581.1| protein YhbC [Aggregatibacter actinomycetemcomitans D11S-1] Length = 151 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 57/87 (65%), Gaps = 1/87 (1%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSD 108 + L +++F++++ G +T+ DC ++S+ +S +LDVE+ I Y LEVSSPG+DRP+ + Sbjct: 33 RYLTVRLFIDKE-GGVTVEDCADVSRQVSAVLDVEDPIADKYNLEVSSPGLDRPLFTLAQ 91 Query: 109 FLRWNGHVVACEIVLSSGDKQKLIGKI 135 + R+ G + + + D++K G++ Sbjct: 92 YARYVGQEILVHLRIPVADRRKWQGEL 118 >gi|145298042|ref|YP_001140883.1| hypothetical protein ASA_1008 [Aeromonas salmonicida subsp. salmonicida A449] gi|166919114|sp|A4SJR3|RIMP_AERS4 RecName: Full=Ribosome maturation factor rimP gi|142850814|gb|ABO89135.1| conserved hypothetical protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 152 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 56/83 (67%), Gaps = 1/83 (1%) Query: 53 LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRW 112 L++F++ ++G +T+ +C E+S + I+DVE+ I Y LEVSSPG+DRP+ + + F ++ Sbjct: 37 LRVFIDGENG-VTVENCAEVSHQVGAIMDVEDPITEEYFLEVSSPGLDRPLFKVAQFEKY 95 Query: 113 NGHVVACEIVLSSGDKQKLIGKI 135 G A ++ +++ +++K G I Sbjct: 96 VGQEAAVQLRMATNNRRKFKGVI 118 >gi|291327116|ref|ZP_06127048.2| hypothetical protein PROVRETT_09231 [Providencia rettgeri DSM 1131] gi|291311612|gb|EFE52065.1| hypothetical protein PROVRETT_09231 [Providencia rettgeri DSM 1131] Length = 171 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 67/111 (60%), Gaps = 1/111 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I +E + F V + + + L++F++ ++G +T+ DC ++S +S +LDVE+ Sbjct: 29 LTEMISAPVEALGFEFVGLEFVRGRTSTLRVFIDSEEG-ITVDDCADVSHQVSAVLDVED 87 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I Y LE+SSPG++RP+ + + R+ G VA + ++ +++K G I Sbjct: 88 PISVIYNLEISSPGLERPLFTIAHYERFMGEEVALTLRIAMQNRRKWQGII 138 >gi|315634095|ref|ZP_07889384.1| YhbC family protein [Aggregatibacter segnis ATCC 33393] gi|315477345|gb|EFU68088.1| YhbC family protein [Aggregatibacter segnis ATCC 33393] Length = 151 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 57/87 (65%), Gaps = 1/87 (1%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSD 108 + L +++F++++ G +T+ DC ++S+ +S +LDVE+ I Y LEVSSPG+DRP+ + Sbjct: 33 RYLTVRLFIDKE-GGVTVDDCADVSRQVSAVLDVEDPIADKYNLEVSSPGLDRPLFTLAQ 91 Query: 109 FLRWNGHVVACEIVLSSGDKQKLIGKI 135 + R+ G + + + D++K G++ Sbjct: 92 YTRYVGQEIVVHLRIPVADRRKWQGEL 118 >gi|163752375|ref|ZP_02159570.1| hypothetical protein KT99_00518 [Shewanella benthica KT99] gi|161327747|gb|EDP98934.1| hypothetical protein KT99_00518 [Shewanella benthica KT99] Length = 151 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 62/114 (54%), Gaps = 7/114 (6%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSD 108 K+ +L+++++ D+G + + DC E S+ IS +LDVE+ I + LEVSSPG+DRP+ Sbjct: 33 KHSILRVYIDNDNG-IFIEDCAETSRQISAVLDVEDPISTEFTLEVSSPGVDRPLFSAEQ 91 Query: 109 FLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAI 162 + + V ++ + G + L G ++G L D NEL IA+ Sbjct: 92 YGSYIDETVKIQLTMPVGGSRNLKGTVIGVEGQTLTL------SVDGNELIIAL 139 >gi|237742965|ref|ZP_04573446.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13] gi|229430613|gb|EEO40825.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13] Length = 156 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 75/139 (53%), Gaps = 4/139 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I+ ++ P IEEM+ V + +++ ++IF+E +G++ + DC +LS I VE Sbjct: 11 ITKIVNPFIEEMNLSLVDVEYVQDGGYWYIRIFIENLNGDLNIEDCSKLSSKIED--KVE 68 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS-ETG 142 +IE + LEVSSPG++RP+ + D++R+ G + + K++ I + + Sbjct: 69 GLIEHKFFLEVSSPGLERPLKKIEDYVRFKGEKITLHLKHKLNYKKQFKAVIKEVNGDNI 128 Query: 143 FFLEKEKRGEKDMNELQIA 161 FL +K E NE++ A Sbjct: 129 IFLIDKKEIEIKFNEIRKA 147 >gi|238924308|ref|YP_002937824.1| hypothetical protein EUBREC_1947 [Eubacterium rectale ATCC 33656] gi|259585772|sp|C4ZBF8|RIMP_EUBR3 RecName: Full=Ribosome maturation factor rimP gi|238875983|gb|ACR75690.1| protein of unknown function DUF150 [Eubacterium rectale ATCC 33656] gi|291525078|emb|CBK90665.1| Uncharacterized protein conserved in bacteria [Eubacterium rectale DSM 17629] gi|291529173|emb|CBK94759.1| Uncharacterized protein conserved in bacteria [Eubacterium rectale M104/1] Length = 155 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 73/137 (53%), Gaps = 2/137 (1%) Query: 27 SVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVENI 85 S IQP+++ M+F V + ++E + L+ +++++ G +T+ DCE +++ ++ ILD E+ Sbjct: 13 SFIQPILDSMNFELVDVEYVKEGGMNYLRAYIDKE-GGITVDDCEVVARQMNEILDREDY 71 Query: 86 IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFL 145 I Y EVSSPG+ RP+ ++ D++R + + ++ G + + + Sbjct: 72 IPDSYTFEVSSPGLGRPLKKEKDYVRNMNKEIEIRTYRAINKSKEFYGLLKAYDKDTVTI 131 Query: 146 EKEKRGEKDMNELQIAI 162 E E N+ IA+ Sbjct: 132 TDEDGNETTFNKSDIAL 148 >gi|229593539|ref|YP_001476723.2| hypothetical protein Spro_0487 [Serratia proteamaculans 568] Length = 150 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 65/115 (56%), Gaps = 1/115 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ ++ +E + F V I + + L+I+++ ++G + + DC ++S +S +L Sbjct: 4 LEQKLTEMLSAPVEALGFELVGIEFIRARQSTLRIYIDSENG-INVDDCADVSHQVSAVL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 DVE I Y LEVSSPG+DRPM + R+ G V+ + ++ +++K G I Sbjct: 63 DVEEPITVAYNLEVSSPGLDRPMFTAEHYTRFLGDEVSLVLRMAVQNRRKWQGII 117 >gi|28899232|ref|NP_798837.1| hypothetical protein VP2458 [Vibrio parahaemolyticus RIMD 2210633] gi|153838301|ref|ZP_01990968.1| protein YhbC [Vibrio parahaemolyticus AQ3810] gi|260362205|ref|ZP_05775189.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030] gi|260879073|ref|ZP_05891428.1| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034] gi|260897744|ref|ZP_05906240.1| conserved hypothetical protein [Vibrio parahaemolyticus Peru-466] gi|260900800|ref|ZP_05909195.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037] gi|34223108|sp|Q87M00|RIMP_VIBPA RecName: Full=Ribosome maturation factor rimP gi|28807456|dbj|BAC60721.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|149748290|gb|EDM59149.1| protein YhbC [Vibrio parahaemolyticus AQ3810] gi|308088965|gb|EFO38660.1| conserved hypothetical protein [Vibrio parahaemolyticus Peru-466] gi|308089555|gb|EFO39250.1| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034] gi|308108208|gb|EFO45748.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037] gi|308111471|gb|EFO49011.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030] gi|328474232|gb|EGF45037.1| ribosome maturation protein RimP [Vibrio parahaemolyticus 10329] Length = 151 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 71/120 (59%), Gaps = 2/120 (1%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 GL ++ +++ +E + V + + + L+I+++ ++G + + DC E+S +S Sbjct: 3 GLERQLTEMLEAPVEASGYELVGLEFIRAGAHSTLRIYIDHENG-INVDDCAEVSHQVSA 61 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LDVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ +++K G I G Sbjct: 62 VLDVEDPISVAYSLEVSSPGLERPLFKAAHYEQFIGHEVSIVLKMAVANRRKWKGIIHGV 121 >gi|86149726|ref|ZP_01067956.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|205356511|ref|ZP_03223275.1| hypothetical protein Cj8421_0138 [Campylobacter jejuni subsp. jejuni CG8421] gi|85839994|gb|EAQ57253.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|205345698|gb|EDZ32337.1| hypothetical protein Cj8421_0138 [Campylobacter jejuni subsp. jejuni CG8421] Length = 140 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 68/123 (55%), Gaps = 11/123 (8%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 + +I+V+++ G + L DC +LS+ +SPI DVE + G Y LEVSSPG++R + + F + Sbjct: 27 IYRIYVQKE-GGVNLDDCAKLSEILSPIFDVEPPVNGEYFLEVSSPGLERKLSKIEHFAK 85 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 G + +++ +K+K+ KI+ + LE + EK I+F+ + AR Sbjct: 86 SIGELAK----ITTNEKEKIEAKIIAVDDENITLENLENKEK------TTINFNDIKKAR 135 Query: 172 LIV 174 + Sbjct: 136 TFI 138 >gi|262393380|ref|YP_003285234.1| hypothetical protein VEA_002607 [Vibrio sp. Ex25] gi|262336974|gb|ACY50769.1| UPF0090 domain-containing protein [Vibrio sp. Ex25] Length = 151 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 71/120 (59%), Gaps = 2/120 (1%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 GL ++ +++ +E + V + + + L+I+++ ++G + + DC E+S +S Sbjct: 3 GLERQLTEMLEAPVEASGYELVGLEFIRAGAHSTLRIYIDHENG-INVDDCAEVSHQVSA 61 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LDVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ +++K G I G Sbjct: 62 VLDVEDPISVAYSLEVSSPGLERPLFKAAHYEQFIGHEVSIVLKMAVANRRKWKGIIHGV 121 >gi|197287228|ref|YP_002153100.1| hypothetical protein PMI3416 [Proteus mirabilis HI4320] gi|226703818|sp|B4F2B7|RIMP_PROMH RecName: Full=Ribosome maturation factor rimP gi|194684715|emb|CAR46695.1| conserved hypothetical protein [Proteus mirabilis HI4320] Length = 152 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 73/120 (60%), Gaps = 4/120 (3%) Query: 19 MGLAG---DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 MGL+ +++++ +E + F V + + + L+I+++ ++G +T+ DC ++S Sbjct: 1 MGLSTLEQKLTAMVSAPVEALGFEFVGLEFIRGRVSTLRIYIDSEEG-ITVDDCADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I+ Y LE+SSPG++RP+ + + ++ G VA + ++ +++K G I Sbjct: 60 VSAVLDVEDPIQTFYNLEISSPGLERPLFTTTHYEQFIGEEVAVVLRIAMQNRRKWQGII 119 >gi|86151421|ref|ZP_01069636.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni 260.94] gi|85841768|gb|EAQ59015.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni 260.94] Length = 140 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 67/123 (54%), Gaps = 11/123 (8%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 + +I+V+++ G + L DC LS+ +SPI DVE + G Y LEVSSPG++R + + F + Sbjct: 27 IYRIYVQKE-GGVNLDDCARLSEILSPIFDVEPPVNGEYFLEVSSPGLERKLSKIEHFAK 85 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 G +V +++ +K+K KI+ + LE + EK I+F+ + A+ Sbjct: 86 SIGELVK----ITTNEKEKFEAKIIAVDDENITLENLENKEK------TTINFNDIKKAK 135 Query: 172 LIV 174 V Sbjct: 136 TFV 138 >gi|54307813|ref|YP_128833.1| hypothetical protein PBPRA0610 [Photobacterium profundum SS9] gi|90412483|ref|ZP_01220486.1| hypothetical protein P3TCK_13963 [Photobacterium profundum 3TCK] gi|51316622|sp|Q6LUJ4|RIMP_PHOPR RecName: Full=Ribosome maturation factor rimP gi|46912236|emb|CAG19031.1| conserved hypothetical protein [Photobacterium profundum SS9] gi|90326520|gb|EAS42926.1| hypothetical protein P3TCK_13963 [Photobacterium profundum 3TCK] Length = 151 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 56/86 (65%), Gaps = 1/86 (1%) Query: 53 LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRW 112 L++FV+ ++G + + DC E S+ IS ++DVE+ I Y LEVSSPG++RP+ + + + ++ Sbjct: 37 LRVFVDHENG-INVEDCAEASRQISAVMDVEDPITVAYHLEVSSPGLERPLFKAAHYQQF 95 Query: 113 NGHVVACEIVLSSGDKQKLIGKIMGT 138 GH V + ++ +++K G I+ Sbjct: 96 VGHEVNLVLKMAMNNRRKWKGDIVAV 121 >gi|238916822|ref|YP_002930339.1| hypothetical protein EUBELI_00890 [Eubacterium eligens ATCC 27750] gi|259585771|sp|C4Z5N3|RIMP_EUBE2 RecName: Full=Ribosome maturation factor rimP gi|238872182|gb|ACR71892.1| hypothetical protein EUBELI_00890 [Eubacterium eligens ATCC 27750] Length = 156 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 65/106 (61%), Gaps = 3/106 (2%) Query: 26 SSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + +IQPV+E + ++E + L+++++++ G +T+ DC+ +S+A + ILD EN Sbjct: 12 TELIQPVVEANGVELFDVDYVKEGSDWYLRVYIDKE-GGVTIDDCQNVSRAFNEILDREN 70 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 I+ Y EVSSPG+ RP+ ++ D+ + G ++ ++ S DK K Sbjct: 71 YIDDQYIFEVSSPGLTRPLKKEKDYEKSIGRMIEIKL-FSPVDKSK 115 >gi|296328567|ref|ZP_06871086.1| probable cytoplasmic protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154376|gb|EFG95175.1| probable cytoplasmic protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 156 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 78/141 (55%), Gaps = 8/141 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I+ ++ P IEEM+ V + +++ ++IF+E +G++ + DC +LS I +E Sbjct: 11 ITRIVNPFIEEMNLSLVDVEYVQDGGYWYVRIFIENLNGDLNIEDCSKLSSKIED--KIE 68 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK---LIGKIMGTSE 140 +IE + LEVSSPG++RP+ + D+ R+ G + + DK++ +I ++ G + Sbjct: 69 ELIEHKFFLEVSSPGLERPLKKLEDYTRFIGEKITLHLKHKLDDKKQFKTIIKEVNG--D 126 Query: 141 TGFFLEKEKRGEKDMNELQIA 161 FL +K E NE++ A Sbjct: 127 NIIFLMDKKEVEIKFNEIRKA 147 >gi|238896677|ref|YP_002921422.1| hypothetical protein KP1_4889 [Klebsiella pneumoniae NTUH-K2044] gi|238549004|dbj|BAH65355.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 154 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 64/111 (57%), Gaps = 1/111 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ ++ +E + F V I + + L+I+++ +DG + + DC ++S +S ++DVE+ Sbjct: 12 LTEMLTAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVMDVED 70 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I Y LEVSS G+DRPM + R+ G VA + ++ +++K G I Sbjct: 71 PITVAYNLEVSSLGLDRPMFTAEHYQRFTGEEVALVLRMAVQNRRKWQGII 121 >gi|226329685|ref|ZP_03805203.1| hypothetical protein PROPEN_03595 [Proteus penneri ATCC 35198] gi|225202871|gb|EEG85225.1| hypothetical protein PROPEN_03595 [Proteus penneri ATCC 35198] Length = 152 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 72/120 (60%), Gaps = 4/120 (3%) Query: 19 MGLAG---DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 MGL+ +++++ +E + F V + + + L+I+++ +DG +T+ DC ++S Sbjct: 1 MGLSTLEQKLTAMVSAPVEALGFEFVGLEFIRGRESTLRIYIDSEDG-ITVDDCADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I+ Y LE+SSPG++RP+ + + ++ G A + ++ +++K G I Sbjct: 60 VSAVLDVEDPIQTVYNLEISSPGLERPLFTATHYEQFIGEEAAIVLRIAMQNRRKWQGII 119 >gi|51316751|sp|Q7MYY5|RIMP_PHOLL RecName: Full=Ribosome maturation factor rimP gi|36787788|emb|CAE16903.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 152 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 72/120 (60%), Gaps = 4/120 (3%) Query: 19 MGLAG---DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 MGL+ ++++I +E + F V + + + L+I+++ ++G +T+ DC ++S Sbjct: 1 MGLSTLEQKLTAMISAPVEALGFELVGLEFIRARVSTLRIYIDSENG-ITVDDCADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LE+SSPG++RP+ + R+ G V+ + ++ +++K +G I Sbjct: 60 VSAVLDVEDPISVLYNLEISSPGLERPLFTTEHYQRFIGEEVSLVLRIAMQNRRKWLGII 119 >gi|160892798|ref|ZP_02073588.1| hypothetical protein CLOL250_00329 [Clostridium sp. L2-50] gi|156865839|gb|EDO59270.1| hypothetical protein CLOL250_00329 [Clostridium sp. L2-50] Length = 142 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 82/143 (57%), Gaps = 7/143 (4%) Query: 28 VIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 ++ P+IE + V + ++E + L+I+ +++ G +T+ DCE +++A+S +LD ++ I Sbjct: 1 MVLPIIEANNLELVDVEYVKEGSDYYLRIYADKE-GGITIGDCEIVNRAMSDLLDADDFI 59 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFL- 145 + Y LEVSSPG+ RP+ +++DF R G +V + + + G++ E + Sbjct: 60 KDAYILEVSSPGLTRPLKKENDFKRSIGKIVEIKTYTKIDNCKDFEGELTAYDEETVTIL 119 Query: 146 ---EKE-KRGEKDMNELQIAISF 164 EKE K KD++ +++A + Sbjct: 120 TEDEKELKIARKDISMIRLAFVY 142 >gi|257465969|ref|ZP_05630280.1| putative cytoplasmic protein [Fusobacterium gonidiaformans ATCC 25563] gi|315917125|ref|ZP_07913365.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC 25563] gi|313691000|gb|EFS27835.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC 25563] Length = 153 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 9/140 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I ++ P EE+ V + +++ ++++VE+ +G++ L DC LS I +D Sbjct: 8 IEKIVIPAAEELGLSLVDVEYMQDGGYWYVRVYVEKLEGDVNLEDCASLSGKIEDAVD-- 65 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +I+ + LEVSSPGI+RP+ ++SDF+R+ G + + +K+ + G + Sbjct: 66 QLIDKKFFLEVSSPGIERPLKKESDFIRFTGEKIFVALKHKLNEKRNIEGILRAYENQTL 125 Query: 144 FLEKEKRGEKDMNELQIAIS 163 L E D ELQI S Sbjct: 126 LL------EVDGEELQIPFS 139 >gi|223042073|ref|ZP_03612249.1| hypothetical protein AM202_0665 [Actinobacillus minor 202] gi|240949225|ref|ZP_04753569.1| hypothetical protein AM305_09786 [Actinobacillus minor NM305] gi|223017148|gb|EEF15584.1| hypothetical protein AM202_0665 [Actinobacillus minor 202] gi|240296341|gb|EER46985.1| hypothetical protein AM305_09786 [Actinobacillus minor NM305] Length = 153 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 65/112 (58%), Gaps = 2/112 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ + Q IE M V I L ++++++++ G +T+ DC ++S+ +S ILDVE Sbjct: 8 LTELTQDTIEAMGCELVGIECQRAGRFLTVRLYIDKE-GGVTIDDCSDVSRQVSAILDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 + I Y LEVSSPG+DRP+ + + R+ G + + + D++K GK+ Sbjct: 67 DPIADKYNLEVSSPGLDRPLFTLAHYERFVGREITIHLRIPMFDRRKWQGKL 118 >gi|188026374|ref|ZP_02961857.2| hypothetical protein PROSTU_03929 [Providencia stuartii ATCC 25827] gi|188020155|gb|EDU58195.1| hypothetical protein PROSTU_03929 [Providencia stuartii ATCC 25827] Length = 171 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 67/111 (60%), Gaps = 1/111 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I +E + F V + + + L++F++ ++G +T+ DC ++S +S +LDVE+ Sbjct: 29 LTEMISAPVEALGFEFVGLEFVRARTSTLRVFIDSEEG-ITVDDCADVSHQVSAVLDVED 87 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I Y LE+SSPG++RP+ + + R+ G VA + ++ ++++ G I Sbjct: 88 PISVVYNLEISSPGLERPLFTVAHYERFVGEEVALTLRIAMQNRRRWQGII 138 >gi|113460962|ref|YP_719029.1| hypothetical protein HS_0819 [Haemophilus somnus 129PT] gi|122945308|sp|Q0I3P7|RIMP_HAES1 RecName: Full=Ribosome maturation factor rimP gi|112823005|gb|ABI25094.1| conserved hypothetical protein [Haemophilus somnus 129PT] Length = 153 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 65/116 (56%), Gaps = 1/116 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQAISPI 79 L + ++QP +E++ I +++++++ DG +T+ DC ++S+ +S + Sbjct: 4 LEDKLQELLQPSVEDLGCELWGIECQRSGRFFTVRLYIDKKDGGVTVDDCADVSRQVSAV 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LDVE+ I Y LEVSSPG++RP+ F + G ++ + + D++K GK+ Sbjct: 64 LDVEDPIADKYNLEVSSPGLNRPLFTLKQFENYIGQDISVHLRVPMLDRRKWQGKL 119 >gi|308272454|emb|CBX29058.1| Ribosome maturation factor rimP [uncultured Desulfobacterium sp.] Length = 194 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 68/122 (55%), Gaps = 9/122 (7%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 +++++V++ G +TL+DC +S +S ILD+ + Y LEVSSPG +RP+ + DF R Sbjct: 74 VIRLYVDKQ-GGVTLKDCAWVSHQLSDILDINLDTDWPYSLEVSSPGANRPLGKPEDFKR 132 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 + G+ ++ ++ G ++G ++ GF K +N+ +AIS+ + AR Sbjct: 133 FKGNTATVRTIVPVEGQKNFKGVLLGFND-GFVKLK-------INDKMVAISYKEIAKAR 184 Query: 172 LI 173 L Sbjct: 185 LF 186 >gi|157320498|gb|ABV39595.1| protein of unknown function DUF150 [Serratia proteamaculans 568] Length = 140 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 60/103 (58%), Gaps = 1/103 (0%) Query: 33 IEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRL 92 +E + F V I + + L+I+++ ++G + + DC ++S +S +LDVE I Y L Sbjct: 6 VEALGFELVGIEFIRARQSTLRIYIDSENG-INVDDCADVSHQVSAVLDVEEPITVAYNL 64 Query: 93 EVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 EVSSPG+DRPM + R+ G V+ + ++ +++K G I Sbjct: 65 EVSSPGLDRPMFTAEHYTRFLGDEVSLVLRMAVQNRRKWQGII 107 >gi|283836284|ref|ZP_06356025.1| hypothetical protein CIT292_10732 [Citrobacter youngae ATCC 29220] gi|291067647|gb|EFE05756.1| hypothetical protein CIT292_10732 [Citrobacter youngae ATCC 29220] Length = 140 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 62/107 (57%), Gaps = 1/107 (0%) Query: 29 IQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEG 88 I +E + + V I + + L+I+++ +DG + + DC ++S +S ++DVE+ I Sbjct: 2 ITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVMDVEDPITV 60 Query: 89 HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 Y LEVSSPG+DRP+ ++R+ G V + ++ +++K G I Sbjct: 61 AYNLEVSSPGLDRPLFTAEHYVRFLGEEVTLVLRMAVQNRRKWQGVI 107 >gi|226313024|ref|YP_002772918.1| hypothetical protein BBR47_34370 [Brevibacillus brevis NBRC 100599] gi|254801675|sp|C0ZF55|RIMP_BREBN RecName: Full=Ribosome maturation factor rimP gi|226095972|dbj|BAH44414.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 152 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 57/98 (58%), Gaps = 1/98 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + G ++ +I P++EE+ V I +E N L++F++ + GN+ + DC +S+ +S Sbjct: 4 VTGIVTELITPIVEEVGLELVDIEYKKEGSNWFLRVFIDNETGNIDIDDCRLVSEKLSEK 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 LD + I Y LEVSSPG +RP+ + DF + G V Sbjct: 64 LDEVDPIPTAYFLEVSSPGAERPLRKDKDFTKAVGRNV 101 >gi|157692342|ref|YP_001486804.1| hypothetical protein BPUM_1562 [Bacillus pumilus SAFR-032] gi|194014514|ref|ZP_03053131.1| protein YlxS (P15A) [Bacillus pumilus ATCC 7061] gi|166979791|sp|A8FDC7|RIMP_BACP2 RecName: Full=Ribosome maturation factor rimP gi|157681100|gb|ABV62244.1| hypothetical protein BPUM_1562 [Bacillus pumilus SAFR-032] gi|194013540|gb|EDW23105.1| protein YlxS (P15A) [Bacillus pumilus ATCC 7061] Length = 157 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 85/153 (55%), Gaps = 8/153 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 +S ++QP+++ + V + ++E +N L++F++ D G + + +C ++S+A+S LD Sbjct: 9 VSEMVQPILDGLQLELVDVEFVKEGQNWFLRVFIDSDKG-VDIEECAKVSEALSEKLDEA 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG-TSETG 142 + I +Y LEVSSPG +RP+ +K+DF + G V + ++ G++ E Sbjct: 68 DPISQNYFLEVSSPGAERPLKKKADFEKALGKNVFMKTYEPIDGEKAFEGELTSFDGEIA 127 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 K K +K++N I ++ + +ARL V+ Sbjct: 128 TVTVKIKTRKKEIN-----IPYEKIANARLAVS 155 >gi|282600045|ref|ZP_05972807.2| hypothetical protein PROVRUST_06459 [Providencia rustigianii DSM 4541] gi|282566854|gb|EFB72389.1| hypothetical protein PROVRUST_06459 [Providencia rustigianii DSM 4541] Length = 185 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 67/111 (60%), Gaps = 1/111 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ ++ +E + F V + + + L+IF++ ++G +T+ DC ++S +S +LDVE+ Sbjct: 43 LTEMVSAPVEALGFEFVGLEFVRGRTSTLRIFIDSEEG-ITVDDCADVSHQVSAVLDVED 101 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I Y LEVSSPG++RP+ + + R+ G VA + ++ ++++ G I Sbjct: 102 PISVIYNLEVSSPGMERPLFTIAHYERFMGEEVALTLRIAMQNRRRWQGII 152 >gi|119774096|ref|YP_926836.1| hypothetical protein Sama_0959 [Shewanella amazonensis SB2B] gi|166919003|sp|A1S460|RIMP_SHEAM RecName: Full=Ribosome maturation factor rimP gi|119766596|gb|ABL99166.1| protein of unknown function DUF150 [Shewanella amazonensis SB2B] Length = 151 Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 65/112 (58%), Gaps = 2/112 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ ++ P +E + I ++ K+ +L+++++ + G +++ DC + S+ IS ILDVE Sbjct: 8 LAEMLTPAVEAAGYVVWGIEYVQAGKHSILRVYIDSEQG-ISVDDCADASRQISAILDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 + I Y LEVSSPG+DRP+ + + R+ G V ++ + + L G I Sbjct: 67 DPISNEYTLEVSSPGLDRPLFNAAQYARYVGEDVKVQLTMPVEGSRNLKGVI 118 >gi|237739229|ref|ZP_04569710.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31] gi|229422837|gb|EEO37884.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31] Length = 156 Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 63/108 (58%), Gaps = 3/108 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I+ ++ P +EEM+ V + L++ +++F+E +G++++ DC +LS I VE Sbjct: 11 ITKIVNPFVEEMNLSLVDVEYLQDGGYWYVRVFIENLNGDLSIEDCSKLSSKIED--KVE 68 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +IE + LEVSSPG++R + + D++R+ G + + DK++ Sbjct: 69 ELIEHKFFLEVSSPGLERALKKLEDYIRFTGEKITLHLKHKLNDKKQF 116 >gi|160940463|ref|ZP_02087808.1| hypothetical protein CLOBOL_05353 [Clostridium bolteae ATCC BAA-613] gi|158437043|gb|EDP14810.1| hypothetical protein CLOBOL_05353 [Clostridium bolteae ATCC BAA-613] Length = 155 Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 70/133 (52%), Gaps = 2/133 (1%) Query: 31 PVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGH 89 P++EE F V + ++E L+ +++++ G + + DCE +S+A+S LD E+ I+ Sbjct: 17 PLMEEHGFELVDVEYVKEAGTWYLRAYIDKE-GGIAVDDCEVISRALSDWLDKEDFIDDS 75 Query: 90 YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEK 149 Y LEVSSPG+ RP+ ++ DF+R G V + +++ G + E L E Sbjct: 76 YILEVSSPGLGRPLKKERDFVRSMGKDVDVRLYRQLNKQKEFTGALSAYDENTVTLTMED 135 Query: 150 RGEKDMNELQIAI 162 + + IA+ Sbjct: 136 GSQMVFEKADIAL 148 >gi|117927004|ref|YP_867621.1| hypothetical protein Mmc1_3730 [Magnetococcus sp. MC-1] gi|189040289|sp|A0LE22|RIMP_MAGSM RecName: Full=Ribosome maturation factor rimP gi|117610760|gb|ABK46215.1| protein of unknown function DUF150 [Magnetococcus sp. MC-1] Length = 185 Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 8/110 (7%) Query: 63 NMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV 122 +++L +C +S+ IS +LDV ++I Y LEVSSPGI+RP+++ DF R+ G +V Sbjct: 76 HISLDECGSISRQISSLLDVHDVIPNAYHLEVSSPGIERPLIKDGDFTRFAGKLVEIRTY 135 Query: 123 ----LSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIA---ISFD 165 SG ++K G ++G E + E GE + Q+A ++FD Sbjct: 136 QPMDTESGPRKKFRGTLLGLQE-AMVVVAEANGEVRIPWEQVAKAHLTFD 184 >gi|254361244|ref|ZP_04977387.1| hypothetical protein MHA_0829 [Mannheimia haemolytica PHL213] gi|153092740|gb|EDN73783.1| hypothetical protein MHA_0829 [Mannheimia haemolytica PHL213] Length = 153 Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 36/104 (34%), Positives = 61/104 (58%), Gaps = 2/104 (1%) Query: 33 IEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYR 91 IE + F V I L ++++++++ G +T+ DC ++S+ +S I DVE+ I Y Sbjct: 16 IEALGFELVGIECQRAGRFLTVRLYIDKE-GGVTIDDCSDVSRQVSAIFDVEDPIADKYN 74 Query: 92 LEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LEVSSPG+DRP+ + + R+ G V + + D++K GKI Sbjct: 75 LEVSSPGLDRPLFTVAHYERFIGQDVVIHLRIPMFDRRKWQGKI 118 >gi|332976857|gb|EGK13682.1| protein of hypothetical function DUF150 [Desmospora sp. 8437] Length = 170 Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 73/151 (48%), Gaps = 9/151 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++QP++ E +E KN +L+++++R DG + L DC +S+ + +LD E Sbjct: 26 VEEMVQPILAEEGLELYDTEYTKEGKNWILRVYIDRPDGKVDLDDCGRVSERLGEVLDRE 85 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + + G Y LEVSSPG +RP+ + + F G + ++K G + S Sbjct: 86 DPLTGQYFLEVSSPGAERPLKKPAHFEAAVGKRIFLNTFEPVDGRKKFEGVLTRYSPESL 145 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E +E + I + + ARL++ Sbjct: 146 TVE--------TDEGAVEIPTEKVAKARLVL 168 >gi|269966858|ref|ZP_06180931.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269828525|gb|EEZ82786.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 151 Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 57/86 (66%), Gaps = 1/86 (1%) Query: 53 LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRW 112 L+I+++ ++G + + DC E+S +S +LDVE+ I Y LEVSSPG++RP+ + + + ++ Sbjct: 37 LRIYIDHENG-INVDDCAEVSHQVSAVLDVEDPISVAYSLEVSSPGLERPLFKAAHYEQF 95 Query: 113 NGHVVACEIVLSSGDKQKLIGKIMGT 138 GH V+ + ++ +++K G I G Sbjct: 96 IGHEVSIVLKMAVANRRKWKGIIHGV 121 >gi|27365055|ref|NP_760583.1| ribosome maturation protein RimP [Vibrio vulnificus CMCP6] gi|37680894|ref|NP_935503.1| hypothetical protein VV2710 [Vibrio vulnificus YJ016] gi|320155439|ref|YP_004187818.1| clustered with transcription termination protein NusA [Vibrio vulnificus MO6-24/O] gi|34223112|sp|Q8DBW2|RIMP_VIBVU RecName: Full=Ribosome maturation factor rimP gi|51316954|sp|Q7MI07|RIMP_VIBVY RecName: Full=Ribosome maturation factor rimP gi|27361201|gb|AAO10110.1| clustered with transcription termination protein NusA [Vibrio vulnificus CMCP6] gi|37199643|dbj|BAC95474.1| conserved hypothetical protein [Vibrio vulnificus YJ016] gi|319930751|gb|ADV85615.1| clustered with transcription termination protein NusA [Vibrio vulnificus MO6-24/O] Length = 151 Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 56/83 (67%), Gaps = 1/83 (1%) Query: 53 LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRW 112 L+I+++ ++G +T+ DC E+S +S +LDVE+ I Y LEVSSPG+DRP+ + + + ++ Sbjct: 37 LRIYIDHENG-ITVEDCAEVSHQVSAVLDVEDPISVAYSLEVSSPGLDRPLFKPAHYEQF 95 Query: 113 NGHVVACEIVLSSGDKQKLIGKI 135 G V + ++ +++K G+I Sbjct: 96 IGQEVNVVLKMAVANRRKWKGEI 118 >gi|91228265|ref|ZP_01262201.1| hypothetical protein V12G01_21798 [Vibrio alginolyticus 12G01] gi|91188142|gb|EAS74444.1| hypothetical protein V12G01_21798 [Vibrio alginolyticus 12G01] Length = 141 Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 57/86 (66%), Gaps = 1/86 (1%) Query: 53 LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRW 112 L+I+++ ++G + + DC E+S +S +LDVE+ I Y LEVSSPG++RP+ + + + ++ Sbjct: 27 LRIYIDHENG-INVDDCAEVSHQVSAVLDVEDPISVAYSLEVSSPGLERPLFKAAHYEQF 85 Query: 113 NGHVVACEIVLSSGDKQKLIGKIMGT 138 GH V+ + ++ +++K G I G Sbjct: 86 IGHEVSIVLKMAVANRRKWKGIIHGV 111 >gi|225023297|ref|ZP_03712489.1| hypothetical protein EIKCOROL_00150 [Eikenella corrodens ATCC 23834] gi|224943942|gb|EEG25151.1| hypothetical protein EIKCOROL_00150 [Eikenella corrodens ATCC 23834] Length = 141 Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 68/112 (60%), Gaps = 5/112 (4%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI +V++ + + + V L + +L ++F+++ +G +T+ DC +S +S + VE Sbjct: 2 DIQAVLEKTLPGLGYELVDFELTAQGDL--RVFIDKPEG-ITVEDCATVSNHLSRLFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 ++ + RLE+SSPG+DRP+ + +DF+R++G +V + L ++ IG I Sbjct: 59 DV--DYKRLEISSPGLDRPLKKAADFIRFSGSLVKLKTRLPVEGQKNFIGHI 108 >gi|294783787|ref|ZP_06749111.1| conserved hypothetical protein [Fusobacterium sp. 1_1_41FAA] gi|294480665|gb|EFG28442.1| conserved hypothetical protein [Fusobacterium sp. 1_1_41FAA] Length = 156 Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 33/108 (30%), Positives = 62/108 (57%), Gaps = 3/108 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I+ ++ P +EEM+ V + L++ ++IF+E +G +++ DC +LS I VE Sbjct: 11 ITKIVNPFVEEMNLSLVDVEYLQDGGYWYVRIFIENLNGELSIEDCSKLSSKIED--KVE 68 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +IE + LEVSSPG++R + + D++R+ G + + DK++ Sbjct: 69 ELIEHKFFLEVSSPGLERALKKLEDYIRFTGEKITLHLKHKLNDKKQF 116 >gi|161579560|ref|NP_931695.2| hypothetical protein plu4531 [Photorhabdus luminescens subsp. laumondii TTO1] Length = 150 Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 69/115 (60%), Gaps = 1/115 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++++I +E + F V + + + L+I+++ ++G +T+ DC ++S +S +L Sbjct: 4 LEQKLTAMISAPVEALGFELVGLEFIRARVSTLRIYIDSENG-ITVDDCADVSHQVSAVL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 DVE+ I Y LE+SSPG++RP+ + R+ G V+ + ++ +++K +G I Sbjct: 63 DVEDPISVLYNLEISSPGLERPLFTTEHYQRFIGEEVSLVLRIAMQNRRKWLGII 117 >gi|163941554|ref|YP_001646438.1| hypothetical protein BcerKBAB4_3639 [Bacillus weihenstephanensis KBAB4] gi|226705817|sp|A9VT54|RIMP_BACWK RecName: Full=Ribosome maturation factor rimP gi|163863751|gb|ABY44810.1| protein of unknown function DUF150 [Bacillus weihenstephanensis KBAB4] Length = 156 Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 83/155 (53%), Gaps = 12/155 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + + QP++EE++ V + ++E ++ L++F++ + G + + +C +S+ +S LD E Sbjct: 9 VEAFAQPIVEELNLELVDVEYVQEGQDWFLRVFIDSEKG-VEIEECGAVSERLSEALDKE 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM---GTSE 140 + I Y L+VSSPG +RP+ ++ DF + G VA + ++ GK++ G + Sbjct: 68 DPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYKPIDGEKMFEGKLLSYDGNTI 127 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 T K ++ E I I D + +ARL VT Sbjct: 128 TLLLTIKTRKKE-------IQIPMDKVANARLAVT 155 >gi|261492532|ref|ZP_05989085.1| hypothetical protein COK_0954 [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496807|ref|ZP_05993181.1| hypothetical protein COI_2524 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307554|gb|EEY08883.1| hypothetical protein COI_2524 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311691|gb|EEY12841.1| hypothetical protein COK_0954 [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 153 Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 36/104 (34%), Positives = 61/104 (58%), Gaps = 2/104 (1%) Query: 33 IEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYR 91 IE + F V I L ++++++++ G +T+ DC ++S+ +S I DVE+ I Y Sbjct: 16 IEALGFELVGIECQRAGRFLTVRLYIDKE-GGVTIDDCSDVSRQVSAIFDVEDPIADKYN 74 Query: 92 LEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LEVSSPG+DRP+ + + R+ G V + + D++K GKI Sbjct: 75 LEVSSPGLDRPLFTVAHYERFIGQDVVIHLRIPMFDRRKWQGKI 118 >gi|332981611|ref|YP_004463052.1| hypothetical protein Mahau_1032 [Mahella australiensis 50-1 BON] gi|332699289|gb|AEE96230.1| protein of unknown function DUF150 [Mahella australiensis 50-1 BON] Length = 154 Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 2/118 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 +A + ++ P++E+ F V I +E L+IF+++ DG +T+ DCE +S+ +S Sbjct: 6 VADTVRQLVMPILEDNGFELVDIEFKKEGAEQYLRIFIDKPDG-ITIDDCELVSRHLSDK 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + I Y LEVSSPGIDRP+ + DF R G V ++ S + G ++G Sbjct: 65 LDEIDPIPQAYILEVSSPGIDRPLKTQRDFERSMGKQVEIKLYKQSMGHKTYKGTLVG 122 >gi|210612464|ref|ZP_03289322.1| hypothetical protein CLONEX_01523 [Clostridium nexile DSM 1787] gi|210151572|gb|EEA82579.1| hypothetical protein CLONEX_01523 [Clostridium nexile DSM 1787] Length = 169 Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 70/133 (52%), Gaps = 2/133 (1%) Query: 31 PVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGH 89 P++E F V + ++E N L+ ++++ G +++ DCE +S+A S ILD ++ IE Sbjct: 31 PIVESNGFELVDVEYVKEGGNWYLRAYIDKP-GGISVDDCEVVSRAFSDILDEKDYIEDT 89 Query: 90 YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEK 149 Y EVSSPG+ RP+ ++ DF R G V + +++ IG + + +E E Sbjct: 90 YIFEVSSPGLGRPLKKEKDFARSIGEEVEIRTYRAIDRQKEFIGILKEYDQDTVTIEYED 149 Query: 150 RGEKDMNELQIAI 162 K +IA+ Sbjct: 150 ETTKTFERSEIAL 162 >gi|325981568|ref|YP_004293970.1| hypothetical protein NAL212_0881 [Nitrosomonas sp. AL212] gi|325531087|gb|ADZ25808.1| protein of unknown function DUF150 [Nitrosomonas sp. AL212] Length = 155 Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 34/84 (40%), Positives = 56/84 (66%), Gaps = 3/84 (3%) Query: 50 NLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDF 109 N LL+IFV++ +G + + DC +S +S +L VENI G RLEVSSPG+DRP+ R++DF Sbjct: 40 NKLLRIFVDKAEG-ICIDDCVTISNHLSRLLAVENIDYG--RLEVSSPGLDRPLRREADF 96 Query: 110 LRWNGHVVACEIVLSSGDKQKLIG 133 +R+ G + ++ + ++ +G Sbjct: 97 IRFRGETIKLKLRIPLEGQKNFVG 120 >gi|119470820|ref|ZP_01613431.1| hypothetical protein ATW7_05756 [Alteromonadales bacterium TW-7] gi|119446047|gb|EAW27326.1| hypothetical protein ATW7_05756 [Alteromonadales bacterium TW-7] Length = 151 Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 67/120 (55%), Gaps = 2/120 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L D+ +++ P +E + F + ++ ++ L++++ +DG +++ +C + S+ IS I Sbjct: 4 LEQDLVTMLTPAVEMLGFELHGLEFVQAGRHSTLRVYIAHEDG-ISVDNCADASRQISAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ ++ + + G V L ++ G ++ S Sbjct: 63 LDVEDPITNEYDLEVSSPGVDRPLFKQDHYEQAQGEEVRVRTKLPQDGRRNFKGDLIAVS 122 >gi|89072573|ref|ZP_01159145.1| hypothetical protein SKA34_18649 [Photobacterium sp. SKA34] gi|89051677|gb|EAR57130.1| hypothetical protein SKA34_18649 [Photobacterium sp. SKA34] Length = 151 Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 71/120 (59%), Gaps = 2/120 (1%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 L ++ +++P + + F V + + ++ L++F++ ++G + + C E+S+ IS Sbjct: 3 ALETQLTEMLEPSVLALGFELVGLEFIRAGEHSTLRVFIDHENG-INVDGCAEVSRQISA 61 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 ++DVE+ I Y LEVSSPG++RP+ + + + ++ GH + ++ G+++K G I+ Sbjct: 62 VMDVEDPITVAYNLEVSSPGLERPLFKAAHYQQFVGHEANIVLKMAMGNRRKWKGDIVAV 121 >gi|212709947|ref|ZP_03318075.1| hypothetical protein PROVALCAL_00997 [Providencia alcalifaciens DSM 30120] gi|212687459|gb|EEB46987.1| hypothetical protein PROVALCAL_00997 [Providencia alcalifaciens DSM 30120] Length = 183 Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 67/111 (60%), Gaps = 1/111 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ ++ +E + F V + + + L+IF++ ++G +T+ DC ++S +S +LDVE+ Sbjct: 41 LTEMVSAPVEALGFEFVGLEFVRGRTSTLRIFIDSEEG-ITVDDCADVSHQVSAVLDVED 99 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I Y LE+SSPG++RP+ + + R+ G VA + ++ ++++ G I Sbjct: 100 PISVIYNLEISSPGMERPLFTIAHYERFMGEEVALSLRIAMQNRRRWQGII 150 >gi|225374839|ref|ZP_03752060.1| hypothetical protein ROSEINA2194_00460 [Roseburia inulinivorans DSM 16841] gi|225213300|gb|EEG95654.1| hypothetical protein ROSEINA2194_00460 [Roseburia inulinivorans DSM 16841] Length = 162 Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 58/88 (65%), Gaps = 2/88 (2%) Query: 28 VIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 +I P+++ +F V + ++E L+++++++ G +T DC ++S+ ++ ILD E+ + Sbjct: 21 LITPILDRRNFELVDVEYVKEGSTWYLRVYIDKE-GGITSDDCADVSREMNEILDREDYV 79 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNG 114 EG Y EVSSPG+ RP+ ++ D++R G Sbjct: 80 EGSYTFEVSSPGLGRPLKKEKDYIRSMG 107 >gi|317046739|ref|YP_004114387.1| hypothetical protein Pat9b_0506 [Pantoea sp. At-9b] gi|316948356|gb|ADU67831.1| protein of unknown function DUF150 [Pantoea sp. At-9b] Length = 202 Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 64/111 (57%), Gaps = 1/111 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I +E + + V I + + L+I+++ ++G + + DC ++S +S ++DVE+ Sbjct: 60 LTELISAPVEALGYELVGIEFIRGRTSTLRIYIDSEEG-INVDDCADVSHQVSAVMDVED 118 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I Y LEVSSPG+DRP+ + R+ G V + ++ +++K G I Sbjct: 119 PITVAYNLEVSSPGLDRPLFTAEHYARFAGEEVGLVLRMAVQNRRKWQGII 169 >gi|171463769|ref|YP_001797882.1| protein of unknown function DUF150 [Polynucleobacter necessarius subsp. necessarius STIR1] gi|226696205|sp|B1XV91|RIMP_POLNS RecName: Full=Ribosome maturation factor rimP gi|171193307|gb|ACB44268.1| protein of unknown function DUF150 [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 163 Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 39/112 (34%), Positives = 67/112 (59%), Gaps = 6/112 (5%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN--MTLRDCEELSQAISPILDVENI 85 VI +E + + V+I E LL++ +E D +T+ DCE++S +S L VENI Sbjct: 6 VISAELENLGYSLVEIE--REAGGLLRVTIENPDYERLITVLDCEKVSHQLSYTLPVENI 63 Query: 86 IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 + RLE+SSPG+DRP+ +DF R+ G V ++ +++G+++ G++ G Sbjct: 64 --PYERLEISSPGLDRPVKSAADFQRFAGMEVDLKLRVAAGNRKNFRGELQG 113 >gi|119944577|ref|YP_942257.1| hypothetical protein Ping_0815 [Psychromonas ingrahamii 37] gi|167016814|sp|A1ST43|RIMP_PSYIN RecName: Full=Ribosome maturation factor rimP gi|119863181|gb|ABM02658.1| hypothetical protein DUF150 [Psychromonas ingrahamii 37] Length = 153 Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 37/147 (25%), Positives = 82/147 (55%), Gaps = 6/147 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ ++ P +E++ + V + + K+ L++++++D+G + + DC +S+ +S I+DVE Sbjct: 8 LTEMLAPSVEDLGYELVGVEYIRAGKHSTLRVYIDQDEG-ILVDDCAAVSRQVSAIMDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I Y LEVSSPG++RP+ + + + G V ++ + ++++ G I+ + Sbjct: 67 DPITNEYSLEVSSPGMNRPLFKAEHYQIFAGEEVKIQLRMPIQNRRRWKGVIVSAEDEII 126 Query: 144 FLEKEKRGEK----DMNELQIAISFDS 166 L E R E+ ++ + I FD+ Sbjct: 127 CLNIEGREERFSLSNIQKANIVPKFDN 153 >gi|308173622|ref|YP_003920327.1| RNA-binding protein [Bacillus amyloliquefaciens DSM 7] gi|307606486|emb|CBI42857.1| putative RNA-binding protein [Bacillus amyloliquefaciens DSM 7] gi|328553446|gb|AEB23938.1| ribosome maturation protein RimP [Bacillus amyloliquefaciens TA208] gi|328911763|gb|AEB63359.1| putative RNA-binding protein [Bacillus amyloliquefaciens LL3] Length = 156 Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 61/94 (64%), Gaps = 2/94 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + + QP+++++ V I ++E +N L++F++ D+G + + +C ++S+A+S LD Sbjct: 9 VQEMAQPILDDLQLELVDIEFVKEGQNWFLRVFIDSDNG-VDIEECAKVSEALSEKLDEA 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + I +Y LEVSSPG +RP+ +K+DF + G V Sbjct: 68 DPITQNYFLEVSSPGAERPLKKKADFEKSLGKNV 101 >gi|302342323|ref|YP_003806852.1| hypothetical protein Deba_0888 [Desulfarculus baarsii DSM 2075] gi|301638936|gb|ADK84258.1| protein of unknown function DUF150 [Desulfarculus baarsii DSM 2075] Length = 161 Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 73/127 (57%), Gaps = 5/127 (3%) Query: 28 VIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 +I+PV+ V++ E +L++FV+R G +TL DC +S+ +S +LDVE+ I Sbjct: 19 LIEPVVRSEGLVLVELQWRPENAGQVLRLFVDRPAGGVTLDDCSLISRQVSDLLDVEDPI 78 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK---QKLIGKIMGTSETGF 143 G YRLEVSSPG++R + +++ + G +A ++ G+K + L G+++G Sbjct: 79 GGAYRLEVSSPGLERRLKSAREYVIFAGR-MAKLVIRDDGEKSGNRVLHGRLLGLQGDDV 137 Query: 144 FLEKEKR 150 +E + R Sbjct: 138 LIEIDGR 144 >gi|15644523|ref|NP_229575.1| hypothetical protein TM1778 [Thermotoga maritima MSB8] gi|34223165|sp|Q9X299|RIMP_THEMA RecName: Full=Ribosome maturation factor rimP gi|4982356|gb|AAD36841.1|AE001815_15 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 150 Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 58/104 (55%), Gaps = 4/104 (3%) Query: 47 EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRK 106 E + +L+I ++ G +++RDCE S+ + LD E+ IE Y LEVSSPG+DRP+ Sbjct: 33 ESRGWVLRIIIDNPVGYVSVRDCELFSREMERFLDREDFIEHSYTLEVSSPGLDRPLRGP 92 Query: 107 SDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKR 150 D++R+ G + + + D + IG+I + + EKR Sbjct: 93 RDYVRFTGKLAK----IVTKDGKTFIGRIESFVDGTITISDEKR 132 >gi|261392136|emb|CAX49636.1| conserved hypothetical protein [Neisseria meningitidis 8013] Length = 149 Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 68/119 (57%), Gaps = 5/119 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 +G + DI ++++ + + + V L + L ++F++++ G +T+ DC +S +S Sbjct: 3 IGSSMDIQTILEKTLPGLGYELVDFELTAQGTL--RVFIDKE-GGITVEDCATVSNHLSR 59 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 + VE+I + LE+SSPG+DRP+ + +DF+R+ G + L ++ IGKI G Sbjct: 60 VFMVEDI--DYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIDGQKNFIGKIEG 116 >gi|291562552|emb|CBL41368.1| Uncharacterized protein conserved in bacteria [butyrate-producing bacterium SS3/4] Length = 155 Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 71/139 (51%), Gaps = 2/139 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + + P++EE +F V + ++E L+ +++++ G T+ DCE +S+ +S LD E Sbjct: 11 VEKFLIPIMEENNFELVDVEYVKEAGTWYLRAYIDKE-GGFTVDDCEMVSRRLSDWLDKE 69 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I+ Y LEVSSPG+ RP+ ++ DF R G V ++ + ++ G + Sbjct: 70 DFIDDSYILEVSSPGLGRPLKKEKDFKRSLGEAVDIKLYRAIERQKDFSGILTAYDADTV 129 Query: 144 FLEKEKRGEKDMNELQIAI 162 + E E N IA+ Sbjct: 130 TIRYEDGSENTFNRKDIAL 148 >gi|52425501|ref|YP_088638.1| hypothetical protein MS1446 [Mannheimia succiniciproducens MBEL55E] gi|81386924|sp|Q65SK7|RIMP_MANSM RecName: Full=Ribosome maturation factor rimP gi|52307553|gb|AAU38053.1| unknown [Mannheimia succiniciproducens MBEL55E] Length = 151 Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 56/85 (65%), Gaps = 1/85 (1%) Query: 51 LLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFL 110 + ++++++++ G +T+ DC ++S+ +S ILDVE+ I Y LEVSSPG+DRP+ F Sbjct: 35 MTVRLYIDKE-GGVTVDDCADVSRQVSAILDVEDPIADKYNLEVSSPGLDRPLFTLEQFQ 93 Query: 111 RWNGHVVACEIVLSSGDKQKLIGKI 135 R+ G ++ + + D++K GK+ Sbjct: 94 RYVGQEISVHLRIPMLDRRKWQGKL 118 >gi|68250160|ref|YP_249272.1| hypothetical protein NTHI1846 [Haemophilus influenzae 86-028NP] gi|145629345|ref|ZP_01785144.1| hypothetical protein CGSHi22121_11095 [Haemophilus influenzae 22.1-21] gi|145641319|ref|ZP_01796898.1| hypothetical protein CGSHiR3021_04472 [Haemophilus influenzae R3021] gi|81335416|sp|Q4QK35|RIMP_HAEI8 RecName: Full=Ribosome maturation factor rimP gi|68058359|gb|AAX88612.1| conserved hypothetical protein [Haemophilus influenzae 86-028NP] gi|144978848|gb|EDJ88571.1| hypothetical protein CGSHi22121_11095 [Haemophilus influenzae 22.1-21] gi|145273862|gb|EDK13729.1| hypothetical protein CGSHiR3021_04472 [Haemophilus influenzae 22.4-21] gi|301170016|emb|CBW29620.1| conserved protein [Haemophilus influenzae 10810] Length = 151 Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 56/85 (65%), Gaps = 1/85 (1%) Query: 51 LLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFL 110 + +++F++++ G +T+ DC ++S+ +S ILDVE+ I Y LEVSSPG+DRP+ F Sbjct: 35 MTVRLFIDKE-GGVTVDDCADVSRQVSAILDVEDPIADKYNLEVSSPGLDRPLFTLPQFE 93 Query: 111 RWNGHVVACEIVLSSGDKQKLIGKI 135 R+ G +A + + +++K GK+ Sbjct: 94 RYIGQDIAVHLRIPVMERRKWQGKL 118 >gi|317471573|ref|ZP_07930919.1| hypothetical protein HMPREF1011_01267 [Anaerostipes sp. 3_2_56FAA] gi|316900952|gb|EFV22920.1| hypothetical protein HMPREF1011_01267 [Anaerostipes sp. 3_2_56FAA] Length = 154 Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 36/104 (34%), Positives = 64/104 (61%), Gaps = 3/104 (2%) Query: 28 VIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 ++ P+I+E F V + ++E N L+I+ +++ G +++ DC +S+A+ LD ++ I Sbjct: 14 LVTPIIDENHFELVDVEYVKEGANWYLRIYADKE-GGISIDDCVLISRALEAKLDADDFI 72 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 + Y LEVSSPG+ RP+ ++ DF R G V ++ + DKQK Sbjct: 73 KDAYILEVSSPGLGRPLKKEKDFQRSIGQSVDIKL-YKAIDKQK 115 >gi|242278480|ref|YP_002990609.1| hypothetical protein Desal_1005 [Desulfovibrio salexigens DSM 2638] gi|259585762|sp|C6C0D6|RIMP_DESAD RecName: Full=Ribosome maturation factor rimP gi|242121374|gb|ACS79070.1| protein of unknown function DUF150 [Desulfovibrio salexigens DSM 2638] Length = 155 Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 77/153 (50%), Gaps = 7/153 (4%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 LA +S ++P IE M + + + I+++ ++G +++ C E+S+ + +L Sbjct: 6 LAKKVSQFVEPTIESMGLTLWGVEVTSANRPAVIIYIDSENG-VSIDQCAEVSRDVGLML 64 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 +VE +I+ Y LEVSSPG++R + + G + +V S ++K G + T E Sbjct: 65 EVEEVIDSAYVLEVSSPGLERKFFKPEQMSAYVGKKIDIALVFSLEGRKKFKGLLQETDE 124 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 G L+ E + E I I +D + A+LI Sbjct: 125 EGLLLKLEDQ------EDPIKIEWDRIKKAKLI 151 >gi|307747095|gb|ADN90365.1| UPF0090 protein [Campylobacter jejuni subsp. jejuni M1] Length = 140 Score = 64.3 bits (155), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 66/123 (53%), Gaps = 11/123 (8%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 + +I+V+++ G + L DC LS+ +SPI DVE + G Y LEVSSPG++R + + F + Sbjct: 27 IYRIYVQKE-GGVNLDDCARLSEILSPIFDVEPPVNGEYFLEVSSPGLERKLSKIEHFAK 85 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 G +V +++ +K+K KI+ + LE + EK I+F + A+ Sbjct: 86 SIGELVK----ITTNEKEKFEAKIIAVDDENITLENLENKEK------TTINFSDIRKAK 135 Query: 172 LIV 174 V Sbjct: 136 TFV 138 >gi|294634513|ref|ZP_06713048.1| hypothetical protein EDWATA_00308 [Edwardsiella tarda ATCC 23685] gi|291092027|gb|EFE24588.1| hypothetical protein EDWATA_00308 [Edwardsiella tarda ATCC 23685] Length = 140 Score = 64.3 bits (155), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 63/108 (58%), Gaps = 1/108 (0%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I +E + F V I + ++ L+I+++ ++G +T+ DC ++S +S +LDVE+ I Sbjct: 1 MITAPVEALGFELVGIEFIRGRHSTLRIYIDSEEG-ITVDDCADVSHQVSAVLDVEDPIS 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 Y LEVSSPG+DRP+ + R+ V + ++ +++K G I Sbjct: 60 VAYNLEVSSPGMDRPLFTAEHYTRFLNEEVTLVLRMAMQNRRKWQGVI 107 >gi|298369369|ref|ZP_06980687.1| hypothetical protein HMPREF9016_01039 [Neisseria sp. oral taxon 014 str. F0314] gi|298283372|gb|EFI24859.1| hypothetical protein HMPREF9016_01039 [Neisseria sp. oral taxon 014 str. F0314] Length = 157 Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 79/151 (52%), Gaps = 17/151 (11%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI +++ + + + V L + +L +IF++++ G +T+ DC +S +S + VE Sbjct: 16 DIQNILDKTLPGLGYELVDFELTAQGDL--RIFIDKE-GGITVEDCATVSNHLSRVFTVE 72 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +I + RLE+SSPG+DRP+ + +DF+R+ G + L ++ IG+I Sbjct: 73 DI--DYKRLEISSPGLDRPLKKAADFVRFAGRQAKIKTRLPIDGQKNFIGRI-------- 122 Query: 144 FLEKEKRGEKDM--NELQIAISFDSLLSARL 172 E K G + + + I FD++ ARL Sbjct: 123 --ENCKNGTVSISFDGKSVDIEFDNIDKARL 151 >gi|71281315|ref|YP_268926.1| hypothetical protein CPS_2201 [Colwellia psychrerythraea 34H] gi|91208404|sp|Q482U1|RIMP_COLP3 RecName: Full=Ribosome maturation factor rimP gi|71147055|gb|AAZ27528.1| conserved hypothetical protein [Colwellia psychrerythraea 34H] Length = 151 Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 66/123 (53%), Gaps = 2/123 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +++P +EE I + N +L++F++ ++G + + DC E+S+ + ILDVE Sbjct: 8 LTDLLRPAVEETGKTLHGIEYISAGNNSVLRLFIDHENG-INVDDCAEVSRQVGAILDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I Y LEVSSPG+DRP+ + F G + +I + ++K G ++ Sbjct: 67 DPISSEYSLEVSSPGVDRPLFELAHFQEVIGETINVKISMPLNGRRKFKGPLVAIENDTL 126 Query: 144 FLE 146 +E Sbjct: 127 IVE 129 >gi|170288838|ref|YP_001739076.1| hypothetical protein TRQ2_1046 [Thermotoga sp. RQ2] gi|281412458|ref|YP_003346537.1| protein of unknown function DUF150 [Thermotoga naphthophila RKU-10] gi|226734063|sp|B1LAP5|RIMP_THESQ RecName: Full=Ribosome maturation factor rimP gi|170176341|gb|ACB09393.1| protein of unknown function DUF150 [Thermotoga sp. RQ2] gi|281373561|gb|ADA67123.1| protein of unknown function DUF150 [Thermotoga naphthophila RKU-10] Length = 150 Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 54/89 (60%), Gaps = 4/89 (4%) Query: 47 EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRK 106 E + +L+I ++ G +++RDCE S+ + LD E++IE Y LEVSSPG+DRP+ Sbjct: 33 ESRGWILRIIIDNPMGYVSVRDCELFSREMERFLDREDLIEHSYTLEVSSPGLDRPLRGP 92 Query: 107 SDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 D++R+ G + + + D + IG+I Sbjct: 93 RDYVRFTGKLAK----IVTKDGKTFIGRI 117 >gi|15677490|ref|NP_274646.1| hypothetical protein NMB1641 [Neisseria meningitidis MC58] gi|218768663|ref|YP_002343175.1| hypothetical protein NMA1895 [Neisseria meningitidis Z2491] gi|304386890|ref|ZP_07369152.1| protein of hypothetical function DUF150 [Neisseria meningitidis ATCC 13091] gi|54040272|sp|P67217|RIMP_NEIMB RecName: Full=Ribosome maturation factor rimP gi|54042665|sp|P67216|RIMP_NEIMA RecName: Full=Ribosome maturation factor rimP gi|7226891|gb|AAF41990.1| conserved hypothetical protein [Neisseria meningitidis MC58] gi|121052671|emb|CAM09012.1| conserved hypothetical protein [Neisseria meningitidis Z2491] gi|304339049|gb|EFM05141.1| protein of hypothetical function DUF150 [Neisseria meningitidis ATCC 13091] Length = 149 Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 68/119 (57%), Gaps = 5/119 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 +G + DI ++++ + + + V L + L ++F++++ G +T+ DC +S +S Sbjct: 3 IGSSMDIQTILEKTLPGLGYELVDFELTAQGTL--RVFIDKESG-ITVEDCATVSNHLSR 59 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 + VE+I + LE+SSPG+DRP+ + +DF+R+ G + L ++ IGKI G Sbjct: 60 VFMVEDI--DYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIDGQKNFIGKIEG 116 >gi|322514416|ref|ZP_08067459.1| hypothetical protein HMPREF0027_1211 [Actinobacillus ureae ATCC 25976] gi|322119664|gb|EFX91722.1| hypothetical protein HMPREF0027_1211 [Actinobacillus ureae ATCC 25976] Length = 153 Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 55/85 (64%), Gaps = 1/85 (1%) Query: 51 LLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFL 110 L ++++++++ G +T+ DC ++S+ +S ILDVE+ I Y LEVSSPG+DRP+ + Sbjct: 35 LTVRLYIDKE-GGVTIDDCSDVSRQVSAILDVEDPIADKYNLEVSSPGLDRPLFTLVHYQ 93 Query: 111 RWNGHVVACEIVLSSGDKQKLIGKI 135 R+ G V + + D++K GK+ Sbjct: 94 RFIGQEVVIHLCIPMFDRRKWQGKL 118 >gi|262066536|ref|ZP_06026148.1| conserved hypothetical protein [Fusobacterium periodonticum ATCC 33693] gi|291379770|gb|EFE87288.1| conserved hypothetical protein [Fusobacterium periodonticum ATCC 33693] Length = 156 Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 62/108 (57%), Gaps = 3/108 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I+ ++ P +EEM+ V + L++ +++F+E +G +++ DC +LS I VE Sbjct: 11 ITKIVNPFVEEMNLSLVDVEYLQDGGYWYVRVFIENLNGELSIEDCSKLSSKIED--RVE 68 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +IE + LEVSSPG++R + + D++R+ G + + DK++ Sbjct: 69 ELIEHKFFLEVSSPGLERALKKLEDYIRFTGEKITLHLKHKMNDKKQF 116 >gi|329295929|ref|ZP_08253265.1| hypothetical protein Pstas_03447 [Plautia stali symbiont] Length = 150 Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 65/115 (56%), Gaps = 1/115 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I +E + + V I + + L+I+++ ++G + + DC ++S +S ++ Sbjct: 4 LEQKLTELISAPVEALGYELVGIEFIRGRTSTLRIYIDSEEG-INVDDCADVSHQVSAVM 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 DVE+ I Y LEVSSPG DRP+ + R+ G V+ + ++ +++K G I Sbjct: 63 DVEDPITVAYNLEVSSPGFDRPLFTAEHYARFAGEEVSLVLRMAVQNRRKWQGII 117 >gi|269123543|ref|YP_003306120.1| hypothetical protein Smon_0773 [Streptobacillus moniliformis DSM 12112] gi|268314869|gb|ACZ01243.1| protein of unknown function DUF150 [Streptobacillus moniliformis DSM 12112] Length = 164 Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 87/164 (53%), Gaps = 12/164 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I IQP + E S I + E L+I+VE +GN +L DC LS I I+D Sbjct: 8 IEKEIQPYLNENSLELADIEYVREGGYNFLRIYVESKNGNTSLDDCVMLSTKIDNIVD-- 65 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +I+ + LEVS+PG++R + ++ DF+R+ G ++ + + +K+ G ++G E G Sbjct: 66 ELIDDKFYLEVSTPGLERKLKKEKDFIRFTGKKISVKTKSNVENKKSFEGILLGF-ENGK 124 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLI--VTDELLRASLNN 185 L K+ D+ E + I + + A+L+ ++D++ + + N Sbjct: 125 ILIKD-----DIIE-NVEIPLEKIKVAKLVFNLSDKIFKEDVEN 162 >gi|218133588|ref|ZP_03462392.1| hypothetical protein BACPEC_01457 [Bacteroides pectinophilus ATCC 43243] gi|217990963|gb|EEC56969.1| hypothetical protein BACPEC_01457 [Bacteroides pectinophilus ATCC 43243] Length = 155 Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 61/95 (64%), Gaps = 2/95 (2%) Query: 28 VIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 +I P+I+ F V + ++E + L++++++D G +T+ DCE++S+A + ILD E+ I Sbjct: 14 LITPLIDAEGFELVDVEYVKEGADWYLRVYIDKD-GGITVNDCEKISRAFNEILDREDYI 72 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 + Y EVSSPG+ RP+ + D+ R G ++ ++ Sbjct: 73 DDAYIFEVSSPGLLRPLKKDKDYQRNLGKLLEVKL 107 >gi|307245493|ref|ZP_07527580.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254447|ref|ZP_07536284.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258906|ref|ZP_07540637.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853552|gb|EFM85770.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862588|gb|EFM94545.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866930|gb|EFM98787.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 153 Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 56/85 (65%), Gaps = 1/85 (1%) Query: 51 LLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFL 110 L ++++++++ G +T+ DC ++S+ +S ILDVE+ I Y LEVSSPG+DRP+ + + Sbjct: 35 LTVRLYIDKE-GGVTIDDCSDVSRQVSAILDVEDPIADKYNLEVSSPGLDRPLFTLAHYQ 93 Query: 111 RWNGHVVACEIVLSSGDKQKLIGKI 135 R+ G + + + D++K GK+ Sbjct: 94 RFIGQEIVIHLRIPMFDRRKWQGKL 118 >gi|302039406|ref|YP_003799728.1| hypothetical protein NIDE4135 [Candidatus Nitrospira defluvii] gi|300607470|emb|CBK43803.1| conserved protein of unknown function DUF150 [Candidatus Nitrospira defluvii] Length = 159 Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 77/148 (52%), Gaps = 6/148 (4%) Query: 25 ISSVIQPVIEEMSFRSVQ-ISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I + P+++ V+ + + + ++++F+++ G +TL DCE+ +++SP LDV Sbjct: 11 IQEIAAPILQSHGLELVEAVCVGQGPRTVIRVFIDKP-GGITLTDCEQAHRSLSPALDVI 69 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + Y LE+SSPG+DRP+ D+ R G V ++ + +L+G ++ + G Sbjct: 70 DPFPHAYTLEISSPGLDRPLRSVQDYRRLIGKPVTLKLREPIQAQWRLVGAVVEVDDRGV 129 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSAR 171 L +++ + I + FD + AR Sbjct: 130 TLGIQQKKTTET----IRVEFDQIALAR 153 >gi|330504829|ref|YP_004381698.1| hypothetical protein MDS_3915 [Pseudomonas mendocina NK-01] gi|328919115|gb|AEB59946.1| hypothetical protein MDS_3915 [Pseudomonas mendocina NK-01] Length = 152 Score = 63.9 bits (154), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 61/98 (62%), Gaps = 2/98 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +++ PVIE + ++ I L + ++ LL++++++ DG + + DCE +S+ +S +LDVE Sbjct: 8 LQALLAPVIEALGYQCWGIEFLSQGRHSLLRVYIDKADG-ILIDDCEIVSRQLSGVLDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 + I Y LEVSSPG+DRP+ F G V ++ Sbjct: 67 DPISSEYTLEVSSPGMDRPLFTLEQFAAHVGEQVKIKL 104 >gi|303249648|ref|ZP_07335853.1| hypothetical protein APP6_1055 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303253713|ref|ZP_07339850.1| hypothetical protein APP2_0900 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247607|ref|ZP_07529650.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307252188|ref|ZP_07534086.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307256658|ref|ZP_07538437.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|302647438|gb|EFL77657.1| hypothetical protein APP2_0900 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302651460|gb|EFL81611.1| hypothetical protein APP6_1055 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306855877|gb|EFM88037.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306860332|gb|EFM92347.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306864706|gb|EFM96610.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 153 Score = 63.9 bits (154), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 55/85 (64%), Gaps = 1/85 (1%) Query: 51 LLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFL 110 L ++++++++ G +T+ DC ++S+ +S ILDVE+ I Y LEVSSPG+DRP+ + Sbjct: 35 LTVRLYIDKE-GGVTIDDCSDVSRQVSAILDVEDPIADKYNLEVSSPGLDRPLFTLKHYQ 93 Query: 111 RWNGHVVACEIVLSSGDKQKLIGKI 135 R+ G V + + D++K GK+ Sbjct: 94 RFIGQEVVIHLRIPMFDRRKWQGKL 118 >gi|319637702|ref|ZP_07992468.1| hypothetical protein HMPREF0604_00091 [Neisseria mucosa C102] gi|317400857|gb|EFV81512.1| hypothetical protein HMPREF0604_00091 [Neisseria mucosa C102] Length = 143 Score = 63.9 bits (154), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 65/112 (58%), Gaps = 5/112 (4%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI S++ + + + V L + +L +IF++++ G +T+ DC +S +S + VE Sbjct: 2 DIQSILDKTLPGLGYELVDFELTAQGDL--RIFIDKE-GGITVEDCATVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +I + RLE+SSPG+DRP+ + +DF+R+ G + L ++ IG+I Sbjct: 59 DI--DYKRLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIDGQKNFIGRI 108 >gi|332799220|ref|YP_004460719.1| Ribosome maturation factor rimP [Tepidanaerobacter sp. Re1] gi|332696955|gb|AEE91412.1| Ribosome maturation factor rimP [Tepidanaerobacter sp. Re1] Length = 157 Score = 63.9 bits (154), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 2/103 (1%) Query: 32 VIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHY 90 +E F + + ++E N L+ ++++ G +T+ DC+ +S + +LD+ ++I Y Sbjct: 17 AVEAAGFELIDMEFVKESGNWYLRYYIDKP-GGITIDDCQTVSVEVGRLLDIADLIPCSY 75 Query: 91 RLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 LEVSSPG++RP+ DFLR+ G V + GDK+ G Sbjct: 76 ILEVSSPGLERPIKTDKDFLRYIGSFVEIKTFEKIGDKKVFTG 118 >gi|146308625|ref|YP_001189090.1| hypothetical protein Pmen_3610 [Pseudomonas mendocina ymp] gi|166990870|sp|A4XYE2|RIMP_PSEMY RecName: Full=Ribosome maturation factor rimP gi|145576826|gb|ABP86358.1| protein of unknown function DUF150 [Pseudomonas mendocina ymp] Length = 152 Score = 63.9 bits (154), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 61/98 (62%), Gaps = 2/98 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +++ PVIE + ++ I L + ++ LL++++++ DG + + DCE +S+ +S +LDVE Sbjct: 8 LQALLAPVIEALGYQCWGIEFLSQGRHSLLRVYIDKADG-ILIDDCEIVSRQLSGVLDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 + I Y LEVSSPG+DRP+ F G V ++ Sbjct: 67 DPISSEYTLEVSSPGMDRPLFTLEQFAAHVGEQVKIKL 104 >gi|328953956|ref|YP_004371290.1| Ribosome maturation factor rimP [Desulfobacca acetoxidans DSM 11109] gi|328454280|gb|AEB10109.1| Ribosome maturation factor rimP [Desulfobacca acetoxidans DSM 11109] Length = 153 Score = 63.9 bits (154), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 66/118 (55%), Gaps = 2/118 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + G ++ +I PV++ V+ + + +L++F+++ G ++L DC LS + + Sbjct: 6 VTGRVTELILPVLQAHDVELVETEFVRAGRRYILRLFLDKP-GGISLEDCAYLSNLLGEL 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +DV ++I Y LEVSSPG+ RP+ + DF R+ G +V + G + G+++G Sbjct: 65 IDVHDVIRHAYILEVSSPGLTRPIKKIEDFSRYAGRLVRITVRGGVGKRSLYRGELLG 122 >gi|251792721|ref|YP_003007447.1| hypothetical protein NT05HA_0985 [Aggregatibacter aphrophilus NJ8700] gi|247534114|gb|ACS97360.1| protein YhbC [Aggregatibacter aphrophilus NJ8700] Length = 151 Score = 63.9 bits (154), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 56/87 (64%), Gaps = 1/87 (1%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSD 108 + L +++F++++ G +T+ DC +S+ +S +LDVE+ I Y LEVSSPG+DRP+ + Sbjct: 33 RYLTVRLFIDKE-GGVTVEDCAYVSRQVSAVLDVEDPIADKYNLEVSSPGLDRPLFTLNQ 91 Query: 109 FLRWNGHVVACEIVLSSGDKQKLIGKI 135 F R+ G + + + D++K G++ Sbjct: 92 FERYLGQEILLHLRIPVADRRKWQGQL 118 >gi|84624710|ref|YP_452082.1| hypothetical protein XOO_3053 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|161898973|ref|YP_201860.2| hypothetical protein XOO3221 [Xanthomonas oryzae pv. oryzae KACC10331] gi|91208349|sp|Q5GXU6|RIMP_XANOR RecName: Full=Ribosome maturation factor rimP gi|91208413|sp|Q2P0W9|RIMP_XANOM RecName: Full=Ribosome maturation factor rimP gi|259645271|sp|B2SVK5|RIMP_XANOP RecName: Full=Ribosome maturation factor rimP gi|84368650|dbj|BAE69808.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 196 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 82/159 (51%), Gaps = 14/159 (8%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFV-----ERDDGNMTLRDCEELSQA 75 A +I++++ P ++ + + + L L++++ E+ + + + DCE +S+ Sbjct: 5 ATEIANLLSPTVDSLGVELLGVEYLPAPGGATLRLYIDVPLAEQPERVINVDDCERVSRE 64 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LDVE+ I GHY LEVSSPG+DRP+ F R G + L+ +++ G+I Sbjct: 65 VSAQLDVEDPISGHYTLEVSSPGVDRPLFTLEQFARHAGESTKIVLKLAQDGRRRFQGEI 124 Query: 136 MGT-SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + +E G + ++ + I FD++ AR++ Sbjct: 125 LRIDAEAGAVVFA-------IDGKDVQIGFDNIDKARIL 156 >gi|325915553|ref|ZP_08177864.1| hypothetical protein XVE_1758 [Xanthomonas vesicatoria ATCC 35937] gi|325538269|gb|EGD09954.1| hypothetical protein XVE_1758 [Xanthomonas vesicatoria ATCC 35937] Length = 196 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 80/158 (50%), Gaps = 12/158 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFV-----ERDDGNMTLRDCEELSQA 75 A +I++++ P +E + + + L L++++ E+ + + + DCE +S+ Sbjct: 5 ATEIANLLSPTVESLGLELLGVEYLPAPGGATLRLYIDVPLAEQPERVINVDDCERVSRE 64 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LDVE+ I G+Y LEVSSPG+DRP+ F R G + L+ +++ G+I Sbjct: 65 VSAQLDVEDPISGNYTLEVSSPGVDRPLFTLEQFARHAGESAKIVLKLAQDGRRRFQGQI 124 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + T + G+ + I FD++ AR++ Sbjct: 125 LRTETEADAVVFSVDGK------DVQIGFDNIDKARIL 156 >gi|295396944|ref|ZP_06807066.1| protein of hypothetical function DUF150 [Aerococcus viridans ATCC 11563] gi|294974797|gb|EFG50502.1| protein of hypothetical function DUF150 [Aerococcus viridans ATCC 11563] Length = 179 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 80/156 (51%), Gaps = 6/156 (3%) Query: 4 THFLH-SKYEPR-IFGDMGLAGD-ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVER 59 HF H +K + R G+M D + ++QP+IE++ F I ++E K+ L+I+V++ Sbjct: 5 AHFFHGNKVKIRKARGNMAKVTDQMQEIVQPIIEDLGFILFDIEFVKEGKSWFLRIYVDK 64 Query: 60 DDGNMTLRDCEELSQAISPILDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 G + + DC +S+ IS +D + I Y LEVSSPG +RP+ D G V Sbjct: 65 PGGGIAIEDCVTVSEHISEAVDQLETDPIPQAYYLEVSSPGAERPLKNDDDVQAAIGEWV 124 Query: 118 ACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEK 153 + ++ + G+++ S+ + +E + + K Sbjct: 125 FLSFYQAIDGQKNIQGRLLSVSDDAYEVETKDKTRK 160 >gi|166364177|ref|YP_001656450.1| YhbC family protein [Microcystis aeruginosa NIES-843] gi|226734161|sp|B0JU70|RIMP_MICAN RecName: Full=Ribosome maturation factor rimP gi|166086550|dbj|BAG01258.1| YhbC family protein [Microcystis aeruginosa NIES-843] Length = 156 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 9/143 (6%) Query: 31 PVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGH 89 P+ E + V I K +L++ + G+ L DCE++S+A+ LD + I+ G Sbjct: 15 PIAENLGLEVVDIVFQTNKRPPVLRVDIRNLAGDTGLEDCEQMSRALETALDSQEILPGA 74 Query: 90 YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEK 149 Y LE+SSPGI R + + +F + G V S G Q+ GK+ G E +L ++ Sbjct: 75 YVLEISSPGISRQLSSEREFQSFKGFPVIVTGQDSQGKPQEWRGKLQGRDEQSIYLNQKG 134 Query: 150 RGEKDMNELQIAISFDSLLSARL 172 R + I +++S RL Sbjct: 135 RS--------LTIDRTTVISVRL 149 >gi|84387287|ref|ZP_00990308.1| hypothetical protein V12B01_22696 [Vibrio splendidus 12B01] gi|86148619|ref|ZP_01066902.1| hypothetical protein MED222_21704 [Vibrio sp. MED222] gi|218710447|ref|YP_002418068.1| hypothetical protein VS_2484 [Vibrio splendidus LGP32] gi|254765031|sp|B7VJH9|RIMP_VIBSL RecName: Full=Ribosome maturation factor rimP gi|84377934|gb|EAP94796.1| hypothetical protein V12B01_22696 [Vibrio splendidus 12B01] gi|85833610|gb|EAQ51785.1| hypothetical protein MED222_21704 [Vibrio sp. MED222] gi|218323466|emb|CAV19643.1| conserved hypothetical protein [Vibrio splendidus LGP32] Length = 151 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 1/83 (1%) Query: 53 LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRW 112 L+I+++ +G + + DC E+S +S ++DVE+ I Y LEVSSPG++RP+ + + ++ Sbjct: 37 LRIYIDSPNG-INVDDCSEVSHQVSAVMDVEDPISVAYNLEVSSPGLERPLFKAEHYQQF 95 Query: 113 NGHVVACEIVLSSGDKQKLIGKI 135 GH V+ + ++ G+++K G I Sbjct: 96 IGHEVSIVLKMAVGNRRKWKGDI 118 >gi|319937396|ref|ZP_08011803.1| hypothetical protein HMPREF9488_02638 [Coprobacillus sp. 29_1] gi|319807762|gb|EFW04355.1| hypothetical protein HMPREF9488_02638 [Coprobacillus sp. 29_1] Length = 153 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/80 (41%), Positives = 52/80 (65%), Gaps = 1/80 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I+S+IQP+++ I + EKN L+IF+E++DG++ + C +S+ IS LD E Sbjct: 5 ITSLIQPILDNHDVYLDDIEYVSEKNEWYLRIFIEKNDGHLDMDTCVAVSEDISLKLDEE 64 Query: 84 NIIEGHYRLEVSSPGIDRPM 103 +II Y LEVSSPG ++P+ Sbjct: 65 DIITNEYYLEVSSPGAEKPL 84 >gi|296315230|ref|ZP_06865171.1| hypothetical protein NEIPOLOT_02434 [Neisseria polysaccharea ATCC 43768] gi|296837868|gb|EFH21806.1| hypothetical protein NEIPOLOT_02434 [Neisseria polysaccharea ATCC 43768] Length = 143 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 65/114 (57%), Gaps = 5/114 (4%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++++ + + + V L + L ++F++++ G +T+ DC +S +S + VE Sbjct: 2 DIQTILEKTLPGLGYELVDFELTAQGTL--RVFIDKE-GGITVEDCAAVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +I + LE+SSPG+DRP+ + +DF+R+ G + L ++ IGKI G Sbjct: 59 DI--DYKNLEISSPGLDRPLKKAADFVRFAGQQAKIKTRLPIDGQKNFIGKIEG 110 >gi|294500901|ref|YP_003564601.1| hypothetical protein BMQ_4155 [Bacillus megaterium QM B1551] gi|294350838|gb|ADE71167.1| conserved hypothetical protein [Bacillus megaterium QM B1551] Length = 156 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/94 (36%), Positives = 60/94 (63%), Gaps = 3/94 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ P++EEM+ V+I ++E K+ L++F++ D+G + + DC +S+ +S +D Sbjct: 9 VEEMVSPILEEMNLELVEIEYVKEGKDWFLRVFIDSDNG-VDIEDCGAVSEKLSEKMDAV 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNG-HV 116 + I +Y LEVSSPG +RP+ + DF R G HV Sbjct: 68 DPIPHNYFLEVSSPGAERPLKKDKDFERAIGKHV 101 >gi|253997781|ref|YP_003049844.1| hypothetical protein Msip34_0068 [Methylovorus sp. SIP3-4] gi|313199845|ref|YP_004038503.1| hypothetical protein MPQ_0074 [Methylovorus sp. MP688] gi|253984460|gb|ACT49317.1| protein of unknown function DUF150 [Methylovorus sp. SIP3-4] gi|312439161|gb|ADQ83267.1| conserved hypothetical protein [Methylovorus sp. MP688] Length = 145 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 74/125 (59%), Gaps = 3/125 (2%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 D+ S+++ + ++ + V + + + L+++F+++ +G + + DC +S + +L VE Sbjct: 3 DLYSLLEKSVSQLGYELVDVEI-SNRGKLIRLFIDKPEG-INIDDCVLVSNQLGNVLAVE 60 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 N I+ + RLEVSSPG+DR + + +DF+R+ G ++ + +++ IG + G + Sbjct: 61 NDID-YDRLEVSSPGLDRVLKKDADFIRFTGERAQVKLRIPVDNRKNFIGILQGIEQDNL 119 Query: 144 FLEKE 148 +E+E Sbjct: 120 LIEQE 124 >gi|197335158|ref|YP_002155239.1| protein VV1_1694 [Vibrio fischeri MJ11] gi|226707621|sp|B5FA77|RIMP_VIBFM RecName: Full=Ribosome maturation factor rimP gi|197316648|gb|ACH66095.1| protein VV1_1694 [Vibrio fischeri MJ11] Length = 151 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 56/84 (66%), Gaps = 1/84 (1%) Query: 53 LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRW 112 L++F++ ++G + + DC E S+ IS ++DVE+ I Y LEVSSPG++RP+ + + + ++ Sbjct: 37 LRVFIDHENG-IFVEDCAEASRQISAVMDVEDPITVAYNLEVSSPGLERPLFKAAHYQQF 95 Query: 113 NGHVVACEIVLSSGDKQKLIGKIM 136 GH V+ + + +++K G I+ Sbjct: 96 VGHEVSLVLKMPMNNRRKWKGDIL 119 >gi|59711091|ref|YP_203867.1| hypothetical protein VF_0484 [Vibrio fischeri ES114] gi|75354545|sp|Q5E7L7|RIMP_VIBF1 RecName: Full=Ribosome maturation factor rimP gi|59479192|gb|AAW84979.1| YhbC-like protein [Vibrio fischeri ES114] Length = 151 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 56/84 (66%), Gaps = 1/84 (1%) Query: 53 LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRW 112 L++F++ ++G + + DC E S+ IS ++DVE+ I Y LEVSSPG++RP+ + + + ++ Sbjct: 37 LRVFIDHENG-IFVEDCAEASRQISAVMDVEDPITVAYNLEVSSPGLERPLFKAAHYQQF 95 Query: 113 NGHVVACEIVLSSGDKQKLIGKIM 136 GH V+ + + +++K G I+ Sbjct: 96 VGHEVSLVLKMPMNNRRKWKGDIL 119 >gi|260654722|ref|ZP_05860210.1| hypothetical protein GCWU000246_00656 [Jonquetella anthropi E3_33 E1] gi|260630437|gb|EEX48631.1| hypothetical protein GCWU000246_00656 [Jonquetella anthropi E3_33 E1] Length = 173 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 77/153 (50%), Gaps = 8/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L G+++++++PV+ E+ +R + L E ++ +++F++ +G +T DCE +S+AI P+L Sbjct: 8 LRGELTALLKPVVVELGYRWEGLQLEEIGSMTVRVFIDGPNG-VTADDCEVVSKAIDPLL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + Y LEVSSPG++R + D+ R+ G ++L G + E Sbjct: 67 EGAMADSNRYYLEVSSPGLERFLFELDDYRRFIGETARIRFHGEGSHIKRLTGVVEAVDE 126 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 G R E AI F+ ++ L+ Sbjct: 127 EG-------RVTIHTEEETAAIPFEDIVEGSLV 152 >gi|209694188|ref|YP_002262116.1| hypothetical protein VSAL_I0596 [Aliivibrio salmonicida LFI1238] gi|226707769|sp|B6ENE0|RIMP_ALISL RecName: Full=Ribosome maturation factor rimP gi|208008139|emb|CAQ78281.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238] Length = 151 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 56/84 (66%), Gaps = 1/84 (1%) Query: 53 LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRW 112 L++F++ ++G + + DC E S+ IS ++DVE+ I Y LEVSSPG++RP+ + + + ++ Sbjct: 37 LRVFIDHENG-IFVEDCAEASRQISAVMDVEDPITVAYNLEVSSPGLERPLFKAAHYQQF 95 Query: 113 NGHVVACEIVLSSGDKQKLIGKIM 136 GH V+ + + +++K G I+ Sbjct: 96 VGHEVSLVLKMPMNNRRKWKGDIL 119 >gi|289665187|ref|ZP_06486768.1| hypothetical protein XcampvN_19489 [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289667365|ref|ZP_06488440.1| hypothetical protein XcampmN_02313 [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 196 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 83/159 (52%), Gaps = 14/159 (8%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFV-----ERDDGNMTLRDCEELSQA 75 A +I++++ P +E + + + L L++++ E+ + + + DCE +S+ Sbjct: 5 ATEIANLLSPTVESLGLELLGVEYLPAPGGATLRLYIDVPLAEQPERVINVDDCERVSRE 64 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LDVE+ I G+Y LEVSSPG+DRP+ F R G + L+ +++ G+I Sbjct: 65 VSAQLDVEDPISGNYTLEVSSPGVDRPLFTLEQFARHAGESAKIVLKLAQDGRRRFQGEI 124 Query: 136 MGT-SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + +E G + D E+QI FD++ AR++ Sbjct: 125 LRIDAEAGAVVFA-----VDGKEVQIG--FDNIDKARIL 156 >gi|330830890|ref|YP_004393842.1| ribosome maturation factor rimP [Aeromonas veronii B565] gi|328806026|gb|AEB51225.1| Ribosome maturation factor rimP [Aeromonas veronii B565] Length = 145 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 56/87 (64%), Gaps = 1/87 (1%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSD 108 K+ L+++++ + G +T+ +C E+S + I+DVE+ I Y LEVSSPG+DRP+ + + Sbjct: 26 KHSTLRVYIDGEQG-VTVENCAEVSHQVGAIMDVEDPITEEYYLEVSSPGLDRPLFKVAH 84 Query: 109 FLRWNGHVVACEIVLSSGDKQKLIGKI 135 F ++ G A + +++ +++K G I Sbjct: 85 FEKYVGQEAAVTLRMATNNRRKFKGVI 111 >gi|152978791|ref|YP_001344420.1| hypothetical protein Asuc_1119 [Actinobacillus succinogenes 130Z] gi|171704316|sp|A6VND8|RIMP_ACTSZ RecName: Full=Ribosome maturation factor rimP gi|150840514|gb|ABR74485.1| protein of unknown function DUF150 [Actinobacillus succinogenes 130Z] Length = 151 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 56/85 (65%), Gaps = 1/85 (1%) Query: 51 LLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFL 110 + +++F++++ G +++ DC ++S+ +S ILDVE+ I Y LEVSSPG+DRP+ S + Sbjct: 35 MTVRLFIDKE-GGVSVDDCADVSRQVSAILDVEDPITDKYNLEVSSPGLDRPLFTLSQYE 93 Query: 111 RWNGHVVACEIVLSSGDKQKLIGKI 135 R+ G + + + D++K GK+ Sbjct: 94 RFIGEDITIHLRIPVSDRRKWQGKL 118 >gi|325578297|ref|ZP_08148432.1| YhbC family protein [Haemophilus parainfluenzae ATCC 33392] gi|301156200|emb|CBW15671.1| conserved protein [Haemophilus parainfluenzae T3T1] gi|325160033|gb|EGC72162.1| YhbC family protein [Haemophilus parainfluenzae ATCC 33392] Length = 151 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 55/85 (64%), Gaps = 1/85 (1%) Query: 51 LLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFL 110 + +++F++++ G + + DC ++S+ +S ILDVE+ I Y LEVSSPG+DRP+ F Sbjct: 35 MTVRLFIDKE-GGVGVDDCADVSRQVSAILDVEDPIADKYNLEVSSPGLDRPLFTLEQFQ 93 Query: 111 RWNGHVVACEIVLSSGDKQKLIGKI 135 R+ G +A + + D++K GK+ Sbjct: 94 RYVGEDIAVHLRIPVLDRRKWQGKL 118 >gi|88797621|ref|ZP_01113210.1| hypothetical protein MED297_10726 [Reinekea sp. MED297] gi|88779793|gb|EAR10979.1| hypothetical protein MED297_10726 [Reinekea sp. MED297] Length = 155 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 72/127 (56%), Gaps = 2/127 (1%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDV 82 +++ +I+PV+ M F + + N L+I+++ +DG + + C ++S+ +S +LDV Sbjct: 10 ELTDLIEPVVIGMGFLLWGVEYIPSGNYSTLRIYIDHEDG-IQVDQCADVSRQVSAVLDV 68 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ I +Y LEVSSPG+DRP+ + + G V ++ + ++K G ++G + Sbjct: 69 EDPISSNYTLEVSSPGMDRPLFTLEQYAAYIGEWVDIKLRYAFEGRRKFKGVLVGIEDGD 128 Query: 143 FFLEKEK 149 ++ +K Sbjct: 129 VIVQVDK 135 >gi|269120927|ref|YP_003309104.1| hypothetical protein Sterm_2319 [Sebaldella termitidis ATCC 33386] gi|268614805|gb|ACZ09173.1| protein of unknown function DUF150 [Sebaldella termitidis ATCC 33386] Length = 157 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 63/114 (55%), Gaps = 3/114 (2%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDV 82 +I I ++EM+ + + E L+I++ER DG ++ DC S+ I P+ + Sbjct: 7 EIEKTIASYLDEMNLELADLEYVPEGGYNYLRIYIERVDGVTSIEDCVSFSEKIDPL--I 64 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 E+ I+ + LEVS+PGI+R + ++ DFLR+ G + + DK+ L G ++ Sbjct: 65 EDFIKDKFFLEVSTPGIERRLRKEKDFLRFKGKKIRLALKSKVNDKKVLTGDLV 118 >gi|239944686|ref|ZP_04696623.1| hypothetical protein SrosN15_27072 [Streptomyces roseosporus NRRL 15998] gi|239991149|ref|ZP_04711813.1| hypothetical protein SrosN1_27849 [Streptomyces roseosporus NRRL 11379] gi|291448147|ref|ZP_06587537.1| UPF0090 protein [Streptomyces roseosporus NRRL 15998] gi|291351094|gb|EFE77998.1| UPF0090 protein [Streptomyces roseosporus NRRL 15998] Length = 167 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 79/151 (52%), Gaps = 9/151 (5%) Query: 25 ISSVIQPVI--EEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 + +++P++ +E+ +++S + +L ++ V+ D+G + L C ELS+AIS LD Sbjct: 9 LRGLLEPLVSAQELDLEEIEVSRAGRRGVL-RVIVDSDEG-VELDACAELSRAISQKLDE 66 Query: 83 ENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + + EG Y LEVSSPG DRP+ ++R G + L+ +L+ +I+ E Sbjct: 67 TDAMGEGEYVLEVSSPGADRPLTEHRHYVRATGRL--ARFHLTGDGSGELVARILAVDED 124 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G LE G K ++FD + AR+ Sbjct: 125 GLDLEVP--GVKGRKPTARRLAFDEIAKARV 153 >gi|225075065|ref|ZP_03718264.1| hypothetical protein NEIFLAOT_00064 [Neisseria flavescens NRL30031/H210] gi|224953549|gb|EEG34758.1| hypothetical protein NEIFLAOT_00064 [Neisseria flavescens NRL30031/H210] Length = 143 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 65/112 (58%), Gaps = 5/112 (4%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI S++ + + + V L + +L ++F++++ G +T+ DC +S +S + VE Sbjct: 2 DIQSILDKTLPGLGYELVDFELTAQGDL--RVFIDKE-GGITVEDCATVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +I + RLE+SSPG+DRP+ + +DF+R+ G + L ++ IG+I Sbjct: 59 DI--DYKRLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIDGQKNFIGRI 108 >gi|148976709|ref|ZP_01813396.1| hypothetical protein VSWAT3_19956 [Vibrionales bacterium SWAT-3] gi|145964060|gb|EDK29318.1| hypothetical protein VSWAT3_19956 [Vibrionales bacterium SWAT-3] Length = 151 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 1/83 (1%) Query: 53 LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRW 112 L+I+++ +G + + DC E+S +S ++DVE+ I Y LEVSSPG++RP+ + + ++ Sbjct: 37 LRIYIDSPNG-INVDDCAEVSHQVSAVMDVEDPISVAYNLEVSSPGLERPLFKAEHYQQF 95 Query: 113 NGHVVACEIVLSSGDKQKLIGKI 135 GH V+ + ++ G+++K G I Sbjct: 96 IGHEVSIVLKMAVGNRRKWKGDI 118 >gi|289578390|ref|YP_003477017.1| hypothetical protein Thit_1191 [Thermoanaerobacter italicus Ab9] gi|297544666|ref|YP_003676968.1| hypothetical protein Tmath_1242 [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528103|gb|ADD02455.1| protein of unknown function DUF150 [Thermoanaerobacter italicus Ab9] gi|296842441|gb|ADH60957.1| protein of unknown function DUF150 [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 151 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 76/138 (55%), Gaps = 3/138 (2%) Query: 26 SSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ P++E+ +F V + +E N L+++++++ G +TL DC+ +S+ +S LD + Sbjct: 9 KDLVTPILEKNNFELVDVEYKKEGNNWYLRVYIDKE-GGITLDDCQLVSEYLSDRLDEVD 67 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG-TSETGF 143 IE Y LEVSSPG+DRP+ + DF R G + + ++K G+++ T + Sbjct: 68 PIEHSYILEVSSPGLDRPLKKPRDFERNIGKEIEISLYSPIDKRKKFEGELIEFTGDKII 127 Query: 144 FLEKEKRGEKDMNELQIA 161 L +R E DM + + Sbjct: 128 ILYNGERKEFDMKNVSLV 145 >gi|212634072|ref|YP_002310597.1| hypothetical protein swp_1216 [Shewanella piezotolerans WP3] gi|212555556|gb|ACJ28010.1| Conserved hypothetical protein [Shewanella piezotolerans WP3] Length = 141 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 66/125 (52%), Gaps = 9/125 (7%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSD 108 K+ +L+++++ + G + + DC E S+ +S ++DVE+ I Y LEVSSPG+DRP+ Sbjct: 23 KHSILRLYIDNEKG-IFIEDCAETSRQVSAVMDVEDPISTEYTLEVSSPGVDRPLFTAEQ 81 Query: 109 FLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLL 168 + + G V ++ + + L G ++G L D NEL IA+ D++ Sbjct: 82 YQLYIGETVKVQVTMPVAGSRNLKGTVIGIEGQMLTL------SVDGNELIIAL--DNIR 133 Query: 169 SARLI 173 LI Sbjct: 134 KGNLI 138 >gi|168184628|ref|ZP_02619292.1| conserved hypothetical protein [Clostridium botulinum Bf] gi|237795858|ref|YP_002863410.1| hypothetical protein CLJ_B2647 [Clostridium botulinum Ba4 str. 657] gi|259585740|sp|C3L0C0|RIMP_CLOB6 RecName: Full=Ribosome maturation factor rimP gi|182672272|gb|EDT84233.1| conserved hypothetical protein [Clostridium botulinum Bf] gi|229262492|gb|ACQ53525.1| conserved hypothetical protein [Clostridium botulinum Ba4 str. 657] Length = 153 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 72/122 (59%), Gaps = 2/122 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ I+P++E +++ I ++E K L+I+++ ++G ++L CE++S+A+S + Sbjct: 6 LIENLKKQIEPIVEGLNYELYHIEFVKEGKENYLRIYIDSENG-VSLEGCEKVSRAVSEL 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + I+ Y LEVSSPGIDR + ++ G+ + + S K+K G+++ + Sbjct: 65 LDDIDPIQESYYLEVSSPGIDRVLYTDKHLEKYKGYNIVLNLYSSIDKKKKYEGELVDFN 124 Query: 140 ET 141 E Sbjct: 125 EN 126 >gi|293390260|ref|ZP_06634594.1| protein YhbC [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950794|gb|EFE00913.1| protein YhbC [Aggregatibacter actinomycetemcomitans D7S-1] Length = 151 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 57/88 (64%), Gaps = 1/88 (1%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSD 108 + L +++F++++ G +T+ DC ++S+ +S +LDVE+ I Y LEVSSPG+DRP+ + Sbjct: 33 RYLTVRLFIDKE-GGVTVEDCADVSRQVSAVLDVEDPIADKYNLEVSSPGLDRPLFTLAQ 91 Query: 109 FLRWNGHVVACEIVLSSGDKQKLIGKIM 136 R+ G + + + D++K G+++ Sbjct: 92 CARYVGQEILVHLRIPVADRRKWQGELV 119 >gi|241760269|ref|ZP_04758364.1| conserved hypothetical protein [Neisseria flavescens SK114] gi|261379746|ref|ZP_05984319.1| hypothetical protein NEISUBOT_03607 [Neisseria subflava NJ9703] gi|241319147|gb|EER55625.1| conserved hypothetical protein [Neisseria flavescens SK114] gi|284797424|gb|EFC52771.1| hypothetical protein NEISUBOT_03607 [Neisseria subflava NJ9703] Length = 143 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 65/112 (58%), Gaps = 5/112 (4%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI S++ + + + V L + +L ++F++++ G +T+ DC +S +S + VE Sbjct: 2 DIQSILDKTLPGLGYELVDFELTAQGDL--RVFIDKE-GGITVEDCATVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +I + RLE+SSPG+DRP+ + +DF+R+ G + L ++ IG+I Sbjct: 59 DI--DYKRLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIDGQKNFIGRI 108 >gi|170719905|ref|YP_001747593.1| hypothetical protein PputW619_0719 [Pseudomonas putida W619] gi|259586190|sp|B1J268|RIMP_PSEPW RecName: Full=Ribosome maturation factor rimP gi|169757908|gb|ACA71224.1| protein of unknown function DUF150 [Pseudomonas putida W619] Length = 169 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 60/98 (61%), Gaps = 2/98 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +++ PV+E + ++ I + + K+ +L+I+++++ G + + DCE +S+ S ILDVE Sbjct: 25 LQALLAPVVEGLGYQCWGIEYVSQGKHSVLRIYIDKE-GGILVEDCEAVSRQASAILDVE 83 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 + I Y LEVSSPG+DRP+ F G V ++ Sbjct: 84 DPISSEYTLEVSSPGMDRPLFTLEQFASHAGEQVKIKL 121 >gi|313667983|ref|YP_004048267.1| hypothetical protein NLA_6440 [Neisseria lactamica ST-640] gi|309378388|emb|CBX22989.1| unnamed protein product [Neisseria lactamica Y92-1009] gi|313005445|emb|CBN86880.1| conserved hypothetical protein [Neisseria lactamica 020-06] Length = 143 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 65/114 (57%), Gaps = 5/114 (4%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++++ + + + V L + L ++F++++ G +T+ DC +S +S + VE Sbjct: 2 DIQTILEKTLPGLGYELVDFELTAQGTL--RVFIDKE-GGITVEDCAAVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +I + LE+SSPG+DRP+ + +DF+R+ G + L ++ IGKI G Sbjct: 59 DI--DYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIDGQKNFIGKIEG 110 >gi|308389760|gb|ADO32080.1| hypothetical protein NMBB_1873 [Neisseria meningitidis alpha710] gi|325134693|gb|EGC57332.1| hypothetical protein NMBM13399_0599 [Neisseria meningitidis M13399] gi|325198740|gb|ADY94196.1| conserved hypothetical protein [Neisseria meningitidis G2136] Length = 143 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 65/114 (57%), Gaps = 5/114 (4%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++++ + + + V L + L ++F++++ G +T+ DC +S +S + VE Sbjct: 2 DIQTILEKTLPGLGYELVDFELTAQGTL--RVFIDKE-GGITVEDCATVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +I + LE+SSPG+DRP+ + +DF+R+ G + L ++ IGKI G Sbjct: 59 DI--DYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIDGQKNFIGKIEG 110 >gi|261400894|ref|ZP_05987019.1| hypothetical protein NEILACOT_04263 [Neisseria lactamica ATCC 23970] gi|269209253|gb|EEZ75708.1| hypothetical protein NEILACOT_04263 [Neisseria lactamica ATCC 23970] Length = 143 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 65/114 (57%), Gaps = 5/114 (4%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++++ + + + V L + L ++F++++ G +T+ DC +S +S + VE Sbjct: 2 DIQTILEKTLPGLGYELVDFELTAQGTL--RVFIDKE-GGITVEDCAAVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +I + LE+SSPG+DRP+ + +DF+R+ G + L ++ IGKI G Sbjct: 59 DI--DYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIDGQKNFIGKIEG 110 >gi|159027909|emb|CAO89716.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 156 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 L D+ + P+ E + V I K +L++ + G+ L DCE++S+++ Sbjct: 5 LIPDLLHLATPIAENLGLEVVDIVFQTNKRPPVLRVDIRNLAGDTGLEDCEQMSRSLETA 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + I+ G Y LE+SSPGI R + + +F + G V S G Q+ GK+ G Sbjct: 65 LDSQEILPGAYVLEISSPGISRQLSSEREFHSFKGFPVIVTGQDSQGKPQEWRGKLQGRD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 E +L ++ R + I +++S RL Sbjct: 125 EQSIYLNQKGRS--------LTIDRTTVISVRL 149 >gi|121635281|ref|YP_975526.1| hypothetical protein NMC1555 [Neisseria meningitidis FAM18] gi|259585799|sp|A1KV49|RIMP_NEIMF RecName: Full=Ribosome maturation factor rimP gi|120866987|emb|CAM10750.1| conserved hypothetical protein [Neisseria meningitidis FAM18] gi|325128689|gb|EGC51555.1| hypothetical protein NMXN1568_0547 [Neisseria meningitidis N1568] gi|325132775|gb|EGC55457.1| hypothetical protein NMBM6190_0488 [Neisseria meningitidis M6190] gi|325136709|gb|EGC59309.1| hypothetical protein NMBM0579_0602 [Neisseria meningitidis M0579] gi|325138661|gb|EGC61217.1| hypothetical protein NMBES14902_0645 [Neisseria meningitidis ES14902] gi|325205640|gb|ADZ01093.1| conserved hypothetical protein [Neisseria meningitidis M04-240196] Length = 143 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 65/114 (57%), Gaps = 5/114 (4%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++++ + + + V L + L ++F++++ G +T+ DC +S +S + VE Sbjct: 2 DIQTILEKTLPGLGYELVDFELTAQGTL--RVFIDKE-GGITVEDCATVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +I + LE+SSPG+DRP+ + +DF+R+ G + L ++ IGKI G Sbjct: 59 DI--DYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIDGQKNFIGKIEG 110 >gi|296330874|ref|ZP_06873349.1| hypothetical protein BSU6633_07236 [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674392|ref|YP_003866064.1| hypothetical protein BSUW23_08545 [Bacillus subtilis subsp. spizizenii str. W23] gi|296151879|gb|EFG92753.1| hypothetical protein BSU6633_07236 [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412636|gb|ADM37755.1| conserved hypothetical protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 156 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 60/94 (63%), Gaps = 2/94 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + + QP+++ + V I ++E ++ L++F++ DDG + + +C ++S+A+S LD Sbjct: 9 VQEMAQPIVDSLQLELVDIEFVKEGQSWFLRVFIDSDDG-VDIEECAKVSEALSEKLDEA 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + I +Y LEVSSPG +RP+ +K+DF + G V Sbjct: 68 DPISQNYFLEVSSPGAERPLKKKADFEKSLGKNV 101 >gi|259586210|sp|B8CKH1|RIMP_SHEPW RecName: Full=Ribosome maturation factor rimP Length = 151 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 66/125 (52%), Gaps = 9/125 (7%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSD 108 K+ +L+++++ + G + + DC E S+ +S ++DVE+ I Y LEVSSPG+DRP+ Sbjct: 33 KHSILRLYIDNEKG-IFIEDCAETSRQVSAVMDVEDPISTEYTLEVSSPGVDRPLFTAEQ 91 Query: 109 FLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLL 168 + + G V ++ + + L G ++G L D NEL IA+ D++ Sbjct: 92 YQLYIGETVKVQVTMPVAGSRNLKGTVIGIEGQMLTL------SVDGNELIIAL--DNIR 143 Query: 169 SARLI 173 LI Sbjct: 144 KGNLI 148 >gi|16078722|ref|NP_389541.1| hypothetical protein BSU16590 [Bacillus subtilis subsp. subtilis str. 168] gi|221309537|ref|ZP_03591384.1| hypothetical protein Bsubs1_09141 [Bacillus subtilis subsp. subtilis str. 168] gi|221313861|ref|ZP_03595666.1| hypothetical protein BsubsN3_09072 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318784|ref|ZP_03600078.1| hypothetical protein BsubsJ_09001 [Bacillus subtilis subsp. subtilis str. JH642] gi|221323056|ref|ZP_03604350.1| hypothetical protein BsubsS_09112 [Bacillus subtilis subsp. subtilis str. SMY] gi|321315426|ref|YP_004207713.1| ribosome maturation protein RimP [Bacillus subtilis BSn5] gi|418459|sp|P32726|RIMP_BACSU RecName: Full=Ribosome maturation factor rimP; AltName: Full=P15A gi|49315|emb|CAA79230.1| ORF1 [Bacillus subtilis subsp. subtilis str. 168] gi|2634031|emb|CAB13532.1| putative RNA-binding protein [Bacillus subtilis subsp. subtilis str. 168] gi|291484214|dbj|BAI85289.1| hypothetical protein BSNT_02698 [Bacillus subtilis subsp. natto BEST195] gi|320021700|gb|ADV96686.1| ribosome maturation protein RimP [Bacillus subtilis BSn5] Length = 156 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 60/94 (63%), Gaps = 2/94 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + + QP+++ + V I ++E ++ L++F++ DDG + + +C ++S+A+S LD Sbjct: 9 VQEMAQPIVDSLQLELVDIEFVKEGQSWFLRVFIDSDDG-VDIEECAKVSEALSEKLDEA 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + I +Y LEVSSPG +RP+ +K+DF + G V Sbjct: 68 DPISQNYFLEVSSPGAERPLKKKADFEKSLGKNV 101 >gi|331084711|ref|ZP_08333799.1| ribosome maturation factor rimP [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410805|gb|EGG90227.1| ribosome maturation factor rimP [Lachnospiraceae bacterium 9_1_43BFAA] Length = 155 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 70/136 (51%), Gaps = 2/136 (1%) Query: 28 VIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 +I P++E F V + ++E N L+ ++++ G + + DCE +S+A S ILD E+ I Sbjct: 14 LILPIVEGNGFELVDVEYVKEGSNWYLRAYIDKP-GGIAVDDCEVVSRAFSEILDREDYI 72 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE 146 E Y EVSSPG+ RP+ ++ DF R G V + +++ G + + +E Sbjct: 73 EDTYIFEVSSPGLGRPLKKEKDFKRSLGEEVEIRTYRAIDRQKEFTGILKSYDKDTVTIE 132 Query: 147 KEKRGEKDMNELQIAI 162 E K +IA+ Sbjct: 133 YEDGEPKTFERSEIAL 148 >gi|161870485|ref|YP_001599657.1| hypothetical protein NMCC_1541 [Neisseria meningitidis 053442] gi|259585798|sp|A9M1D3|RIMP_NEIM0 RecName: Full=Ribosome maturation factor rimP gi|161596038|gb|ABX73698.1| conserved hypothetical protein [Neisseria meningitidis 053442] Length = 143 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 65/114 (57%), Gaps = 5/114 (4%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++++ + + + V L + L ++F++++ G +T+ DC +S +S + VE Sbjct: 2 DIQTILEKTLPGLGYELVDFELTAQGTL--RVFIDKE-GGITVEDCATVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +I + LE+SSPG+DRP+ + +DF+R+ G + L ++ IGKI G Sbjct: 59 DI--DYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIDGQKNFIGKIEG 110 >gi|21243418|ref|NP_643000.1| hypothetical protein XAC2689 [Xanthomonas axonopodis pv. citri str. 306] gi|34223124|sp|Q8PJ53|RIMP_XANAC RecName: Full=Ribosome maturation factor rimP gi|21108969|gb|AAM37536.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 196 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/158 (25%), Positives = 79/158 (50%), Gaps = 12/158 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFV-----ERDDGNMTLRDCEELSQA 75 A +I++++ P +E + + + L L++++ E+ + + + DCE +S+ Sbjct: 5 ATEIANLLSPTVESLGLELLGVEYLPAPGGATLRLYIDVPLAEQPERVINVDDCERVSRE 64 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LDVE+ I G+Y LEVSSPG+DRP+ F R G + L+ +++ G+I Sbjct: 65 VSAQLDVEDPISGNYTLEVSSPGVDRPLFTLEQFARHTGESAKIVLKLAQDGRRRFQGQI 124 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + G+ + I +D++ AR++ Sbjct: 125 LRIDAEAAAVVFAVDGK------DVQIGYDNIDKARIV 156 >gi|282857787|ref|ZP_06266996.1| conserved hypothetical protein [Pyramidobacter piscolens W5455] gi|282584457|gb|EFB89816.1| conserved hypothetical protein [Pyramidobacter piscolens W5455] Length = 165 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 58/95 (61%), Gaps = 3/95 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILD-V 82 IS ++ ++E + + V ++E + +L+++++RD G + L DCE ++ I +LD Sbjct: 6 ISGQLKTLVESLGYEFVGAETVKEAGSQILRVYIDRD-GGVGLDDCERSAKEIGALLDTA 64 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + E HY LEVSSPG++RP+ + D+ R+ G V Sbjct: 65 ADAFEDHYLLEVSSPGLERPLFKAEDYARFAGRPV 99 >gi|325661696|ref|ZP_08150319.1| ribosome maturation factor rimP [Lachnospiraceae bacterium 4_1_37FAA] gi|325471949|gb|EGC75164.1| ribosome maturation factor rimP [Lachnospiraceae bacterium 4_1_37FAA] Length = 174 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 70/136 (51%), Gaps = 2/136 (1%) Query: 28 VIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 +I P++E F V + ++E N L+ ++++ G + + DCE +S+A S ILD E+ I Sbjct: 33 LILPIVEGNGFELVDVEYVKEGSNWYLRAYIDKP-GGIAVDDCEVVSRAFSEILDREDYI 91 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE 146 E Y EVSSPG+ RP+ ++ DF R G V + +++ G + + +E Sbjct: 92 EDTYIFEVSSPGLGRPLKKEKDFKRSLGEEVEIRTYRAIDRQKEFTGILKSYDKDTVTIE 151 Query: 147 KEKRGEKDMNELQIAI 162 E K +IA+ Sbjct: 152 YEDGEPKTFERSEIAL 167 >gi|294142062|ref|YP_003558040.1| hypothetical protein SVI_3291 [Shewanella violacea DSS12] gi|293328531|dbj|BAJ03262.1| conserved hypothetical protein [Shewanella violacea DSS12] Length = 151 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 1/89 (1%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSD 108 K+ L+++++ D G + + DC E S+ IS +LDVE+ I Y LEVSSPG+DRP+ Sbjct: 33 KHSTLRVYIDNDKG-IFIEDCAETSRQISAVLDVEDPISTEYTLEVSSPGVDRPLFSSEQ 91 Query: 109 FLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 + + V ++ + + L G ++G Sbjct: 92 YASYIDETVKIQLTMPVAGSRNLKGTVIG 120 >gi|259586211|sp|A8FYS2|RIMP_SHESH RecName: Full=Ribosome maturation factor rimP Length = 151 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 1/89 (1%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSD 108 K+ +L+++++ + G + + DC E S+ +S +LDVE+ I Y LEVSSPG+DRP+ + Sbjct: 33 KHSILRVYIDNEKG-IFIEDCAETSRQVSAVLDVEDPISTEYTLEVSSPGVDRPLFKAEQ 91 Query: 109 FLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 + + V ++ + + L G I G Sbjct: 92 YAAYIDETVKIQLTMPVAGSRNLKGTITG 120 >gi|289805472|ref|ZP_06536101.1| hypothetical protein Salmonellaentericaenterica_13917 [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 86 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 1/87 (1%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I +E + + V I + + L+I+++ +DG + + DC ++S +S +LDVE+ I Sbjct: 1 MITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVEDPIS 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNG 114 Y LEVSSPG+DRPM + + G Sbjct: 60 VAYNLEVSSPGLDRPMFTADHYASFRG 86 >gi|224419195|ref|ZP_03657201.1| hypothetical protein HcanM9_07971 [Helicobacter canadensis MIT 98-5491] gi|253828125|ref|ZP_04871010.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313142699|ref|ZP_07804892.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|253511531|gb|EES90190.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313131730|gb|EFR49347.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] Length = 143 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 72/129 (55%), Gaps = 6/129 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 M ++ D+ + IQ ++E + I L+E N +L+IFV + +++L DC+E+S A+S Sbjct: 1 MLISQDLQTKIQKLVESFDCKLYDIVTLKENDNQILRIFVTKK-SSVSLDDCQEISLALS 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 P+LDVE Y LEVSSPGI+R + K + G ++ + + K++ GK++ Sbjct: 60 PLLDVEIPESKSYFLEVSSPGIERTLKTKEHYCDAIGELLK----VKTFAKEEFKGKLLA 115 Query: 138 TSETGFFLE 146 + LE Sbjct: 116 VNSDNLELE 124 >gi|83748668|ref|ZP_00945685.1| Hypothetical cytosolic protein [Ralstonia solanacearum UW551] gi|207743365|ref|YP_002259757.1| hypothetical protein RSIPO_01539 [Ralstonia solanacearum IPO1609] gi|83724630|gb|EAP71791.1| Hypothetical cytosolic protein [Ralstonia solanacearum UW551] gi|206594762|emb|CAQ61689.1| conserved hypothetical protein [Ralstonia solanacearum IPO1609] Length = 162 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 67/120 (55%), Gaps = 7/120 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I+ + M + V++ LL++++++ + + + DCE++S ++ + +VEN Sbjct: 3 LTDLIEKTLTAMGYELVEVE--RAPAGLLRVYIDQAETGIVIEDCEKVSHQLTRVFEVEN 60 Query: 85 IIEGHY-RLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG-TSETG 142 + HY RLEVSSPG+DRP+ +DF R+ G V + L ++ G + T E G Sbjct: 61 V---HYERLEVSSPGLDRPLRTLTDFTRFAGQEVKVTLRLPVDGQKNFTGIVQAPTGEPG 117 >gi|313888257|ref|ZP_07821928.1| conserved hypothetical protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845660|gb|EFR33050.1| conserved hypothetical protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 153 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/128 (33%), Positives = 66/128 (51%), Gaps = 12/128 (9%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L +I + + V EE+ + V I K+ LL IF+ + +G + L DC ++S+++ Sbjct: 6 LKKEIYPLAEEVAEELGYEIVDIEFQNGSKHDLLSIFIYKKEG-IDLNDCTDMSRSLEKK 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD I++ Y LE+SSPG+DRP+ K D+ R G+ V KL I G Sbjct: 65 LDNLEILKNPYYLEISSPGLDRPLKTKDDYRRNIGNEVDV----------KLYAPIDGKK 114 Query: 140 ETGFFLEK 147 E F L+K Sbjct: 115 EFSFVLDK 122 >gi|20807844|ref|NP_623015.1| hypothetical protein TTE1397 [Thermoanaerobacter tengcongensis MB4] gi|34222922|sp|Q8RA33|RIMP_THETN RecName: Full=Ribosome maturation factor rimP gi|20516406|gb|AAM24619.1| conserved hypothetical protein [Thermoanaerobacter tengcongensis MB4] Length = 151 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 66/112 (58%), Gaps = 2/112 (1%) Query: 26 SSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ P++EE +F V + +E K+ L+++++++ G +TL DC+ +S+ +S LD + Sbjct: 9 KELVMPILEENNFELVDVEYKKEGKHWYLRVYIDKE-GGITLDDCQLVSEYLSDRLDEVD 67 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 I+ Y LEVSSPG+DRP+ DF R G V + ++K G+++ Sbjct: 68 PIDHSYILEVSSPGLDRPLKTPRDFKRNLGKEVEVSLYQPIDKRKKFTGELL 119 >gi|253580824|ref|ZP_04858087.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847894|gb|EES75861.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 154 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 56/91 (61%), Gaps = 2/91 (2%) Query: 28 VIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 ++ P++E F V + ++E N L+ ++++ G +T+ DCE +S+A S LD + I Sbjct: 14 LLAPIVELNGFELVDVEYVKEAGNWYLRGYIDKP-GGITVNDCETVSRAFSDKLDENDFI 72 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 E Y +E+SSPG+DRP+ + DF R G +V Sbjct: 73 EDSYIMEISSPGLDRPLKKDKDFERNMGKLV 103 >gi|167035705|ref|YP_001670936.1| hypothetical protein PputGB1_4714 [Pseudomonas putida GB-1] gi|189040210|sp|B0KHY0|RIMP_PSEPG RecName: Full=Ribosome maturation factor rimP gi|166862193|gb|ABZ00601.1| protein of unknown function DUF150 [Pseudomonas putida GB-1] Length = 152 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 60/98 (61%), Gaps = 2/98 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +++ PV+E + ++ I + + K+ +L+I+++++ G + + DCE +S+ S ILDVE Sbjct: 8 LQALLAPVVEGLGYQCWGIEYVSQGKHSVLRIYIDKE-GGILVEDCEAVSRQASAILDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 + I Y LEVSSPG+DRP+ F G V ++ Sbjct: 67 DPISSEYTLEVSSPGMDRPLFTLEQFASHAGEQVKIKL 104 >gi|17231320|ref|NP_487868.1| hypothetical protein alr3828 [Nostoc sp. PCC 7120] gi|34222944|sp|Q8YQJ5|RIMP_ANASP RecName: Full=Ribosome maturation factor rimP gi|17132962|dbj|BAB75527.1| alr3828 [Nostoc sp. PCC 7120] Length = 153 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 1/131 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L I+ + PV E++ V I ++ +L+I + + L DCE +S+A+ Sbjct: 5 LVPPITDLAIPVAEQLGLEVVGIVFHTNQRPPVLRIDIRNPQQDTGLDDCERMSRALEAA 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD II Y LEVSSPGI R +V +F+ + G V ++Q+ IG+++ Sbjct: 65 LDATEIIPDAYVLEVSSPGISRQLVTDREFISFKGFPVIVSTSPPHEEQQEWIGQLIRRD 124 Query: 140 ETGFFLEKEKR 150 ET ++ ++ R Sbjct: 125 ETKVYINQKGR 135 >gi|119504357|ref|ZP_01626437.1| hypothetical protein MGP2080_00755 [marine gamma proteobacterium HTCC2080] gi|119459865|gb|EAW40960.1| hypothetical protein MGP2080_00755 [marine gamma proteobacterium HTCC2080] Length = 166 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 65/114 (57%), Gaps = 2/114 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 +S ++ P +E + F + LL + L++F+E D G +++ DC ++S+ + +LDVE Sbjct: 8 LSELLTPTVESLGFELWGLELLSPNRRPTLRLFIEGDTG-VSVDDCAKVSRHVGGVLDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 + I G Y LEVSSPGIDR + + + + G + ++ +++ G +MG Sbjct: 67 DPISGDYTLEVSSPGIDRLLFKVDQYGLYIGEPIEVKLRFPFEGRRRFRGWLMG 120 >gi|325276163|ref|ZP_08141968.1| ribosome maturation protein RimP [Pseudomonas sp. TJI-51] gi|324098700|gb|EGB96741.1| ribosome maturation protein RimP [Pseudomonas sp. TJI-51] Length = 152 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 60/98 (61%), Gaps = 2/98 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +++ PV+E + ++ I + + K+ +L+I+++++ G + + DCE +S+ S ILDVE Sbjct: 8 LQALLAPVVEGLGYQCWGIEFVSQGKHSVLRIYIDKE-GGILVDDCEAVSRQASAILDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 + I Y LEVSSPG+DRP+ F G V ++ Sbjct: 67 DPISSEYTLEVSSPGMDRPLFTLEQFASHAGEQVKIKL 104 >gi|302537259|ref|ZP_07289601.1| conserved hypothetical protein [Streptomyces sp. C] gi|302446154|gb|EFL17970.1| conserved hypothetical protein [Streptomyces sp. C] Length = 170 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/127 (35%), Positives = 71/127 (55%), Gaps = 7/127 (5%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII-EGHYRLEVSSPGIDRPMVRKS 107 K +L+I V+ D+G + L +C ELS+ IS LD +++ E Y LEVSSPG DRP+ + Sbjct: 34 KRRMLRIIVDSDEG-VDLDECAELSREISDRLDESDVMGEDEYNLEVSSPGADRPLSERR 92 Query: 108 DFLRWNGHVVACEIVLSSGDK--QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFD 165 ++R G +V ++ + G+K +LI +I+G + G LE G K I+F Sbjct: 93 HYVRATGRLVKFQLS-AEGEKGAGELIARILGVDDEGMDLEVP--GVKGRKATARRIAFT 149 Query: 166 SLLSARL 172 + AR+ Sbjct: 150 DVAKARV 156 >gi|316984983|gb|EFV63937.1| conserved hypothetical protein [Neisseria meningitidis H44/76] gi|319410894|emb|CBY91288.1| conserved hypothetical protein [Neisseria meningitidis WUE 2594] gi|325130690|gb|EGC53430.1| hypothetical protein NMBOX9930304_0543 [Neisseria meningitidis OX99.30304] gi|325140714|gb|EGC63228.1| hypothetical protein NMBCU385_0550 [Neisseria meningitidis CU385] gi|325144893|gb|EGC67180.1| hypothetical protein NMBM01240013_0663 [Neisseria meningitidis M01-240013] gi|325199765|gb|ADY95220.1| conserved hypothetical protein [Neisseria meningitidis H44/76] gi|325204602|gb|ADZ00056.1| conserved hypothetical protein [Neisseria meningitidis M01-240355] Length = 143 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 65/114 (57%), Gaps = 5/114 (4%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++++ + + + V L + L ++F++++ G +T+ DC +S +S + VE Sbjct: 2 DIQTILEKTLPGLGYELVDFELTAQGTL--RVFIDKESG-ITVEDCATVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +I + LE+SSPG+DRP+ + +DF+R+ G + L ++ IGKI G Sbjct: 59 DI--DYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIDGQKNFIGKIEG 110 >gi|261364308|ref|ZP_05977191.1| hypothetical protein NEIMUCOT_04406 [Neisseria mucosa ATCC 25996] gi|288567561|gb|EFC89121.1| hypothetical protein NEIMUCOT_04406 [Neisseria mucosa ATCC 25996] Length = 143 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 65/114 (57%), Gaps = 5/114 (4%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++++ + + + V L + L ++F++++ G +T+ DC +S +S + VE Sbjct: 2 DIQTILEKTLPGLGYELVDFELTAQGTL--RVFIDKE-GGITVEDCATVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +I + LE+SSPG+DRP+ + +DF+R+ G + L ++ IG+I G Sbjct: 59 DI--DYKNLEISSPGLDRPLKKAADFVRFAGQQAKIKTRLPVDGQKNFIGRIEG 110 >gi|194366590|ref|YP_002029200.1| hypothetical protein Smal_2817 [Stenotrophomonas maltophilia R551-3] gi|226701526|sp|B4SQS2|RIMP_STRM5 RecName: Full=Ribosome maturation factor rimP gi|194349394|gb|ACF52517.1| protein of unknown function DUF150 [Stenotrophomonas maltophilia R551-3] Length = 196 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 81/162 (50%), Gaps = 20/162 (12%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFV-----ERDDGNMTLRDCEELSQA 75 A DI++++ P + + + + L L++++ E+ + + + DCE +S+ Sbjct: 5 ATDIANLLAPTVVSLGLELLGVEYLPAPGGATLRLYIDVPLAEQPERIINVDDCERVSRE 64 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +DVE+ I G+Y LEVSSPG+DRP+ F R G + L ++++L G+I Sbjct: 65 VSAQMDVEDPISGNYTLEVSSPGVDRPLFNLEQFGRHLGESAKVTLKLPQDNRRRLQGRI 124 Query: 136 MGTSETG----FFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 E F ++K ++ +S D++ AR++ Sbjct: 125 EAIDEAAGAITFIVDK----------AEVVVSADNIDKARIM 156 >gi|225848028|ref|YP_002728191.1| hypothetical protein SULAZ_0194 [Sulfurihydrogenibium azorense Az-Fu1] gi|259645121|sp|C1DXS9|RIMP_SULAA RecName: Full=Ribosome maturation factor rimP gi|225644280|gb|ACN99330.1| conserved hypothetical protein [Sulfurihydrogenibium azorense Az-Fu1] Length = 147 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 1/119 (0%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 M L + ++ P++E+ + V I + K +L+I++ +G ++ DCE +SQ I Sbjct: 1 MKLEEKVKELLSPILEDRGLKLVDIEYITGKRPVLRIYIYNPEGT-SIDDCEYVSQRIGS 59 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ILDVE++I+ Y LEVSSPG+DR ++ + G V + DK+ G + G Sbjct: 60 ILDVEDLIKTSYTLEVSSPGLDRKFKNIEEYNIFKGKDVVVKTKEPIEDKKIFKGILEG 118 >gi|157376523|ref|YP_001475123.1| hypothetical protein Ssed_3391 [Shewanella sediminis HAW-EB3] gi|157318897|gb|ABV37995.1| protein of unknown function DUF150 [Shewanella sediminis HAW-EB3] Length = 172 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 1/89 (1%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSD 108 K+ +L+++++ + G + + DC E S+ +S +LDVE+ I Y LEVSSPG+DRP+ + Sbjct: 54 KHSILRVYIDNEKG-IFIEDCAETSRQVSAVLDVEDPISTEYTLEVSSPGVDRPLFKAEQ 112 Query: 109 FLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 + + V ++ + + L G I G Sbjct: 113 YAAYIDETVKIQLTMPVAGSRNLKGTITG 141 >gi|255066626|ref|ZP_05318481.1| hypothetical protein NEISICOT_01636 [Neisseria sicca ATCC 29256] gi|255049210|gb|EET44674.1| hypothetical protein NEISICOT_01636 [Neisseria sicca ATCC 29256] Length = 189 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 65/114 (57%), Gaps = 5/114 (4%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++++ + + + V L + L ++F++++ G +T+ DC +S +S + VE Sbjct: 48 DIQTILEKTLPGLGYELVDFELTAQGTL--RVFIDKE-GGITVEDCATVSNHLSRVFMVE 104 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +I + LE+SSPG+DRP+ + +DF+R+ G + L ++ IG+I G Sbjct: 105 DI--DYKNLEISSPGLDRPLKKAADFVRFAGQQAKIKTRLPVDGQKNFIGRIEG 156 >gi|254805396|ref|YP_003083617.1| hypothetical protein NMO_1459 [Neisseria meningitidis alpha14] gi|254668938|emb|CBA07181.1| conserved hypothetical protein [Neisseria meningitidis alpha14] gi|254669625|emb|CBA03670.1| conserved hypothetical protein [Neisseria meningitidis alpha153] gi|325201700|gb|ADY97154.1| conserved hypothetical protein [Neisseria meningitidis M01-240149] gi|325208564|gb|ADZ04016.1| conserved hypothetical protein [Neisseria meningitidis NZ-05/33] Length = 143 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 65/114 (57%), Gaps = 5/114 (4%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++++ + + + V L + L ++F++++ G +T+ DC +S +S + VE Sbjct: 2 DIQTILEKTLPGLGYELVDFELTAQGTL--RVFIDKESG-ITVEDCATVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +I + LE+SSPG+DRP+ + +DF+R+ G + L ++ IGKI G Sbjct: 59 DI--DYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIDGQKNFIGKIEG 110 >gi|325921397|ref|ZP_08183254.1| hypothetical protein XGA_2246 [Xanthomonas gardneri ATCC 19865] gi|325548155|gb|EGD19152.1| hypothetical protein XGA_2246 [Xanthomonas gardneri ATCC 19865] Length = 196 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 66/121 (54%), Gaps = 6/121 (4%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFV-----ERDDGNMTLRDCEELSQA 75 A +I++++ P +E + + + L L++++ E+ + + + DCE +S+ Sbjct: 5 ATEIANLLSPTVESLGLELLGVEYLPAPGGATLRLYIDVPLAEQPERVINVDDCERVSRE 64 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LDVE+ I G+Y LEVSSPG+DRP+ F R G + L+ +++ GKI Sbjct: 65 VSAQLDVEDPITGNYTLEVSSPGVDRPLFTLEQFARHVGESAKIVLKLAQDGRRRFQGKI 124 Query: 136 M 136 + Sbjct: 125 L 125 >gi|319787429|ref|YP_004146904.1| hypothetical protein Psesu_1831 [Pseudoxanthomonas suwonensis 11-1] gi|317465941|gb|ADV27673.1| protein of unknown function DUF150 [Pseudoxanthomonas suwonensis 11-1] Length = 192 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 78/165 (47%), Gaps = 17/165 (10%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFV--------ERDDGNMTLRDCEELSQ 74 +I ++ P +E + + + L L++++ E +T+ DCE +S+ Sbjct: 7 EIVQLLAPTVESLGLELLGVEYLPAPGGATLRLYIDVPAAGEGEEPARTVTIEDCEAVSR 66 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 +S LDV + I G+Y LEVSSPG+DRP+ F+R+ G + L +++L G Sbjct: 67 EVSAQLDVADPISGNYTLEVSSPGMDRPLFAAEHFIRFLGQQAKVGLKLPQDGRRRLQGT 126 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELL 179 I+ ++ ++ + ++ D++ ARL+ E L Sbjct: 127 ILRVADGQVAF--------GLDNAEFVVALDNIDKARLVPDWEAL 163 >gi|167756907|ref|ZP_02429034.1| hypothetical protein CLORAM_02456 [Clostridium ramosum DSM 1402] gi|167703082|gb|EDS17661.1| hypothetical protein CLORAM_02456 [Clostridium ramosum DSM 1402] Length = 155 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/86 (38%), Positives = 55/86 (63%), Gaps = 1/86 (1%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 M L I ++I+P++E I L+E L+IFVE+++G++ + C +S+AIS Sbjct: 1 MELLDTIKTLIKPILENNDVYLDDIEYLQENGEWYLRIFVEKNEGSLDMDTCVAVSEAIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPM 103 +D E+ I+G Y LEVSSPG+++P+ Sbjct: 61 LKMDEEDPIKGEYYLEVSSPGVEKPL 86 >gi|104780026|ref|YP_606524.1| hypothetical protein PSEEN0793 [Pseudomonas entomophila L48] gi|259586182|sp|Q1IF45|RIMP_PSEE4 RecName: Full=Ribosome maturation factor rimP gi|95109013|emb|CAK13709.1| conserved hypothetical protein [Pseudomonas entomophila L48] Length = 169 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 60/98 (61%), Gaps = 2/98 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +++ PV+E + ++ I + + K+ +L+I+++++ G + + DCE +S+ S ILDVE Sbjct: 25 LQALLAPVVEGLGYQCWGIEYVSQGKHSVLRIYIDKE-GGILVDDCEAVSRQASAILDVE 83 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 + I Y LEVSSPG+DRP+ F G V ++ Sbjct: 84 DPISSEYTLEVSSPGMDRPLFTLEQFASHAGEQVKIKL 121 >gi|315658445|ref|ZP_07911317.1| protein of hypothetical function DUF150 [Staphylococcus lugdunensis M23590] gi|315496774|gb|EFU85097.1| protein of hypothetical function DUF150 [Staphylococcus lugdunensis M23590] Length = 155 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/152 (23%), Positives = 86/152 (56%), Gaps = 6/152 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + ++ ++IQPV+E +++ V++ ++E K+ L++ ++++ G + L DC S+ IS + Sbjct: 4 ITEEVETLIQPVLEALNYELVEVEFVKEGKDHFLRVSIDKE-GGVDLNDCTLASEKISEV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +D + I+ Y L+V+SPG +RP+ ++ D+ R + + + ++ +G ++ + Sbjct: 63 MDEHDPIKEMYYLDVASPGAERPIKKEQDYQRAIQQPIFVSLYAPIENNKEWLGILVEVT 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 +E +++ +K QI+I + + AR Sbjct: 123 AETITMEVKEKAKKK----QISIPRNKIAKAR 150 >gi|312885215|ref|ZP_07744894.1| hypothetical protein VIBC2010_19055 [Vibrio caribbenthicus ATCC BAA-2122] gi|309367155|gb|EFP94728.1| hypothetical protein VIBC2010_19055 [Vibrio caribbenthicus ATCC BAA-2122] Length = 151 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 56/83 (67%), Gaps = 1/83 (1%) Query: 53 LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRW 112 L+IF++ +G + + DC E+S+ +S ++DVE+ I Y LEVSSPG++RP+ + + + ++ Sbjct: 37 LRIFIDHANG-INVEDCAEVSRQVSAVMDVEDPITVAYNLEVSSPGLERPLFKAAHYEQF 95 Query: 113 NGHVVACEIVLSSGDKQKLIGKI 135 GH V+ + ++ +++K G I Sbjct: 96 IGHEVSLVLKMAMNNRRKWKGII 118 >gi|229013000|ref|ZP_04170165.1| hypothetical protein bmyco0001_34380 [Bacillus mycoides DSM 2048] gi|228748254|gb|EEL98114.1| hypothetical protein bmyco0001_34380 [Bacillus mycoides DSM 2048] Length = 173 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 71/124 (57%), Gaps = 2/124 (1%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEEL 72 R+F D + + + QP++EE++ V + ++E ++ L++F++ + G + + +C + Sbjct: 6 RLFMDKKVTEIVEAFAQPIVEELNLELVDVEYVQEGQDWFLRVFIDSEKG-VEIEECGAV 64 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+ +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ Sbjct: 65 SERLSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYKPIDGEKMFE 124 Query: 133 GKIM 136 GK++ Sbjct: 125 GKLL 128 >gi|297584077|ref|YP_003699857.1| hypothetical protein Bsel_1784 [Bacillus selenitireducens MLS10] gi|297142534|gb|ADH99291.1| protein of unknown function DUF150 [Bacillus selenitireducens MLS10] Length = 156 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 6/156 (3%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + + + +P++ E V I ++E KN L++F++ +G + L C +S+ +S Sbjct: 4 AITDKVEKLAEPIVSEAGLELVDIEFVKEGKNWFLRVFIDGPEG-VDLDHCSTVSERLSE 62 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LD + IE Y LEVSSPG +RP+ + D + G V D++ GK++G Sbjct: 63 KLDQSDPIEQAYYLEVSSPGAERPLKKAEDITKAIGKNVHVATYAPIEDEKVFEGKLIGF 122 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G L E++ + ++ Q+ I +D + ARL V Sbjct: 123 D--GETLTVEQKIKTRVS--QVEIPYDKVSKARLAV 154 >gi|94310971|ref|YP_584181.1| hypothetical protein Rmet_2033 [Cupriavidus metallidurans CH34] gi|166980260|sp|Q1LLR4|RIMP_RALME RecName: Full=Ribosome maturation factor rimP gi|93354823|gb|ABF08912.1| conserved hypothetical protein [Cupriavidus metallidurans CH34] Length = 162 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 55/82 (67%), Gaps = 2/82 (2%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 LL++++++ + + + DCE++S+ ++ +L VEN+ + RLEVSSPG+DRP+ + +DF+R Sbjct: 28 LLRVYIDQPETGIVIEDCEKVSRQLTHVLTVENV--DYERLEVSSPGLDRPLKKLADFVR 85 Query: 112 WNGHVVACEIVLSSGDKQKLIG 133 + G V + L ++ +G Sbjct: 86 FAGAEVRVTLRLPVNGQKNFVG 107 >gi|261379109|ref|ZP_05983682.1| hypothetical protein NEICINOT_05033 [Neisseria cinerea ATCC 14685] gi|269144429|gb|EEZ70847.1| hypothetical protein NEICINOT_05033 [Neisseria cinerea ATCC 14685] Length = 143 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 65/114 (57%), Gaps = 5/114 (4%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++++ + + + V L + L ++F++++ G +T+ DC +S +S + VE Sbjct: 2 DIQTILEKTLPGLGYELVDFELTAQGTL--RVFIDKE-GGITVEDCATVSNHLSRLFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +I + LE+SSPG+DRP+ + +DF+R+ G + L ++ IGKI G Sbjct: 59 DI--DYKNLEISSPGLDRPLKKAADFVRFAGQQAKIKTRLPIDGQKNFIGKIEG 110 >gi|237734615|ref|ZP_04565096.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229382435|gb|EEO32526.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 167 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/86 (38%), Positives = 55/86 (63%), Gaps = 1/86 (1%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 M L I ++I+P++E I L+E L+IFVE+++G++ + C +S+AIS Sbjct: 13 MELLDTIKTLIKPILENNDVYLDDIEYLQENGEWYLRIFVEKNEGSLDMDTCVAVSEAIS 72 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPM 103 +D E+ I+G Y LEVSSPG+++P+ Sbjct: 73 LKMDEEDPIKGEYYLEVSSPGVEKPL 98 >gi|117919477|ref|YP_868669.1| hypothetical protein Shewana3_1028 [Shewanella sp. ANA-3] gi|166919124|sp|A0KTZ4|RIMP_SHESA RecName: Full=Ribosome maturation factor rimP gi|117611809|gb|ABK47263.1| protein of unknown function DUF150 [Shewanella sp. ANA-3] Length = 151 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 65/112 (58%), Gaps = 2/112 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +++ +E + F+ I ++ K+ +L++F++ ++G + + DC +S+ +S +LDVE Sbjct: 8 LADMLKVPVEALGFQLWGIEYVQAGKHSILRVFIDGENG-INIEDCANVSRQVSAVLDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 + I Y LEVSSPG+DRP+ + + G V ++ + + L G I Sbjct: 67 DPISTEYTLEVSSPGVDRPLFTAEQYAAYVGEDVKLQLTMPVAGSRNLKGAI 118 >gi|24372785|ref|NP_716827.1| hypothetical protein SO_1202 [Shewanella oneidensis MR-1] gi|34222878|sp|Q8EHL7|RIMP_SHEON RecName: Full=Ribosome maturation factor rimP gi|24346870|gb|AAN54272.1|AE015564_3 conserved hypothetical protein [Shewanella oneidensis MR-1] Length = 151 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 60/104 (57%), Gaps = 2/104 (1%) Query: 33 IEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYR 91 +E + F+ I ++ K+ +L++F++ ++G + + DC +S+ +S +LDVE+ I Y Sbjct: 16 VEALGFQLWGIEYVQAGKHSILRVFIDGENG-INIEDCANVSRQVSAVLDVEDPISTEYT 74 Query: 92 LEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LEVSSPG+DRP+ + + G V ++ + + L G I Sbjct: 75 LEVSSPGVDRPLFTAEQYAAYVGEDVKLQLTMPVAGSRNLKGAI 118 >gi|113969368|ref|YP_733161.1| hypothetical protein Shewmr4_1024 [Shewanella sp. MR-4] gi|114046595|ref|YP_737145.1| hypothetical protein Shewmr7_1089 [Shewanella sp. MR-7] gi|123029878|sp|Q0HLG3|RIMP_SHESM RecName: Full=Ribosome maturation factor rimP gi|123030836|sp|Q0HXR7|RIMP_SHESR RecName: Full=Ribosome maturation factor rimP gi|113884052|gb|ABI38104.1| protein of unknown function DUF150 [Shewanella sp. MR-4] gi|113888037|gb|ABI42088.1| protein of unknown function DUF150 [Shewanella sp. MR-7] Length = 151 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 60/104 (57%), Gaps = 2/104 (1%) Query: 33 IEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYR 91 +E + F+ I ++ K+ +L++F++ ++G + + DC +S+ +S +LDVE+ I Y Sbjct: 16 VEALGFQLWGIEYVQAGKHSILRVFIDGENG-INIEDCANVSRQVSAVLDVEDPISTEYT 74 Query: 92 LEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LEVSSPG+DRP+ + + G V ++ + + L G I Sbjct: 75 LEVSSPGVDRPLFTAEQYAAYVGEDVKLQLTMPVAGSRNLKGAI 118 >gi|331082959|ref|ZP_08332079.1| ribosome maturation factor rimP [Lachnospiraceae bacterium 6_1_63FAA] gi|330399954|gb|EGG79612.1| ribosome maturation factor rimP [Lachnospiraceae bacterium 6_1_63FAA] Length = 154 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 58/88 (65%), Gaps = 2/88 (2%) Query: 28 VIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 +++P++ E +F V + ++E N L+ ++++ +G +T+ DCE +S+A S LD E+ I Sbjct: 14 LLEPIVAEHNFELVDVEYVKEGSNFYLRAYIDKPEG-ITVDDCEIVSRAFSQKLDEEDFI 72 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNG 114 + Y +EVSSPG+ RP+ ++ D+ R G Sbjct: 73 DEAYIMEVSSPGLGRPLKKEKDYKRSMG 100 >gi|26991397|ref|NP_746822.1| hypothetical protein PP_4714 [Pseudomonas putida KT2440] gi|148549781|ref|YP_001269883.1| hypothetical protein Pput_4579 [Pseudomonas putida F1] gi|259586189|sp|A5W989|RIMP_PSEP1 RecName: Full=Ribosome maturation factor rimP gi|24986466|gb|AAN70286.1|AE016669_4 conserved hypothetical protein [Pseudomonas putida KT2440] gi|148513839|gb|ABQ80699.1| protein of unknown function DUF150 [Pseudomonas putida F1] gi|313500622|gb|ADR61988.1| Ribosome maturation factor rimP [Pseudomonas putida BIRD-1] Length = 169 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 60/98 (61%), Gaps = 2/98 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +++ PV+E + ++ I + + K+ +L+I+++++ G + + DCE +S+ S ILDVE Sbjct: 25 LQALLAPVVEGLGYQCWGIEYVSQGKHSVLRIYIDKE-GGILVDDCEAVSRQASAILDVE 83 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 + I Y LEVSSPG+DRP+ F G V ++ Sbjct: 84 DPISSEYTLEVSSPGMDRPLFTLEQFASHAGEQVKIKL 121 >gi|227499046|ref|ZP_03929183.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|226904495|gb|EEH90413.1| conserved hypothetical protein [Acidaminococcus sp. D21] Length = 153 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 +S + P+ E V + + E++ L+++++++ G + + DC +S + +LD ++ Sbjct: 10 VSELALPICEACGVELVDVEYVRERDWYLRVYIDKE-GGIDIDDCTAVSGDLEKVLDEKD 68 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNG 114 +I+ Y LEVSSPGIDRP+ + SD++ G Sbjct: 69 VIKEQYYLEVSSPGIDRPLKKDSDYVDHYG 98 >gi|297191725|ref|ZP_06909123.1| UPF0090 protein [Streptomyces pristinaespiralis ATCC 25486] gi|197721419|gb|EDY65327.1| UPF0090 protein [Streptomyces pristinaespiralis ATCC 25486] Length = 165 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 81/151 (53%), Gaps = 11/151 (7%) Query: 25 ISSVIQPVIE--EMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 + +++P++ E+ +++S + +L +I V+ D+G + L C ELS+AIS LD Sbjct: 9 LRGLLEPLVSAAELDLEEIEVSRAGRRRML-RITVDSDEG-VELDACAELSRAISEKLDE 66 Query: 83 ENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + + EG Y LEVSSPG DRP+ F+R G +V ++ GD L+ +++ + Sbjct: 67 TDAMGEGEYVLEVSSPGADRPLSEHRHFVRATGRLVKLQLK-EGGD---LVARLLTVDDE 122 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G LE G K ++FD ++ AR+ Sbjct: 123 GLDLEVP--GVKGRKPTARRVAFDDIVKARV 151 >gi|295706247|ref|YP_003599322.1| hypothetical protein BMD_4142 [Bacillus megaterium DSM 319] gi|294803906|gb|ADF40972.1| conserved hypothetical protein [Bacillus megaterium DSM 319] Length = 156 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 34/94 (36%), Positives = 59/94 (62%), Gaps = 3/94 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ P++EEM+ V+I ++E K+ L++F++ D G + + DC +S+ +S +D Sbjct: 9 VEEMVSPILEEMNLELVEIEYVKEGKDWFLRVFIDSDTG-VDIEDCGAVSEKLSEKMDAV 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNG-HV 116 + I +Y LEVSSPG +RP+ + DF R G HV Sbjct: 68 DPIPHNYFLEVSSPGAERPLKKDKDFERAIGKHV 101 >gi|260771816|ref|ZP_05880734.1| UPF0090 domain-containing protein [Vibrio metschnikovii CIP 69.14] gi|260613108|gb|EEX38309.1| UPF0090 domain-containing protein [Vibrio metschnikovii CIP 69.14] Length = 151 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 56/83 (67%), Gaps = 1/83 (1%) Query: 53 LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRW 112 L+I+++ ++G +T+ C E+S +S +LDVE+ I Y LEVSSPG++RP+ + + + ++ Sbjct: 37 LRIYIDHENG-ITVDACAEVSHQVSAVLDVEDPITVAYNLEVSSPGLERPLFKAAHYEQF 95 Query: 113 NGHVVACEIVLSSGDKQKLIGKI 135 GH V+ + ++ +++K G I Sbjct: 96 IGHEVSIVLKMAVANRRKWKGII 118 >gi|160943265|ref|ZP_02090501.1| hypothetical protein FAEPRAM212_00751 [Faecalibacterium prausnitzii M21/2] gi|158445504|gb|EDP22507.1| hypothetical protein FAEPRAM212_00751 [Faecalibacterium prausnitzii M21/2] gi|295105167|emb|CBL02711.1| Uncharacterized protein conserved in bacteria [Faecalibacterium prausnitzii SL3/3] Length = 161 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 3/126 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++++P +E M R + +E + L+I ++RD G M C E+S A+ PILD Sbjct: 13 VEALVRPTVEGMGLRLWDVVFEKEGPDWYLRILIDRD-GTMDTDTCAEVSHALDPILDEA 71 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK-QKLIGKIMGTSETG 142 + I+ Y LEV SPG+ R + R + G V +++ + D ++L G + G + Sbjct: 72 DPIDQSYYLEVGSPGLGRKLTRPEHYEALKGQKVRAKLIRPNADGVRELSGILTGREGST 131 Query: 143 FFLEKE 148 LE E Sbjct: 132 VTLETE 137 >gi|297569837|ref|YP_003691181.1| protein of unknown function DUF150 [Desulfurivibrio alkaliphilus AHT2] gi|296925752|gb|ADH86562.1| protein of unknown function DUF150 [Desulfurivibrio alkaliphilus AHT2] Length = 155 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 85/165 (51%), Gaps = 22/165 (13%) Query: 17 GDMGLAGDISSVIQPVI-------EEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDC 69 G+ L + +++PV+ E+ FR E +L++ ++ DDG + L DC Sbjct: 4 GESALIQRLHELLEPVVLDHGLELAELQFRR------EAPGWVLRLIIDADDG-VGLDDC 56 Query: 70 EELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ 129 +S+ +S +L+VE+ IE + LEVSSPG+DRP+ R+ D++R G + + Sbjct: 57 TRVSREVSHLLEVEDPIEQAFTLEVSSPGLDRPLRRERDYVRCRGKMAKIVCTRQIEGQN 116 Query: 130 KLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +IG++ ++ + E D +++ ++ ++ ARL+V Sbjct: 117 VVIGRLGEVADGAVTV------ETDAGPVKVPLA--AVRRARLVV 153 >gi|78048395|ref|YP_364570.1| hypothetical protein XCV2839 [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325924689|ref|ZP_08186127.1| hypothetical protein XPE_0035 [Xanthomonas perforans 91-118] gi|91208411|sp|Q3BRP3|RIMP_XANC5 RecName: Full=Ribosome maturation factor rimP gi|78036825|emb|CAJ24518.1| YhbC family protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325544895|gb|EGD16240.1| hypothetical protein XPE_0035 [Xanthomonas perforans 91-118] Length = 196 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 80/161 (49%), Gaps = 18/161 (11%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFV-----ERDDGNMTLRDCEELSQA 75 A +I++++ P +E + + + L L++++ E+ + + + DCE +S+ Sbjct: 5 ATEIANLLSPTVESLGLELLGVEYLPAPGGATLRLYIDVPLAEQPERVINVDDCERVSRE 64 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LDVE+ I G+Y LEVSSPG+DRP+ F R G + L+ +++ G+I Sbjct: 65 VSAQLDVEDPISGNYTLEVSSPGVDRPLFTLEQFARHTGESAKIVLKLAQDGRRRFQGEI 124 Query: 136 M---GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + +E F K + I +D++ AR++ Sbjct: 125 LRIDAEAEAVVFAVDGK---------DVQIGYDNIDKARIV 156 >gi|89095216|ref|ZP_01168139.1| YhbC-like protein [Oceanospirillum sp. MED92] gi|89080513|gb|EAR59762.1| YhbC-like protein [Oceanospirillum sp. MED92] Length = 151 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 65/112 (58%), Gaps = 2/112 (1%) Query: 28 VIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 +I+P + + F I L + K+ L+++++ ++G + + DC ++S +S I+DVE+ I Sbjct: 11 LIEPSVSALGFELWGIEFLSQGKHSTLRVYIDSENG-INVDDCAKVSHQVSGIMDVEDPI 69 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 G+Y LEVSSPG++RP+ F + G + + ++ ++K G + G Sbjct: 70 AGNYTLEVSSPGMERPLFTLEQFAAYAGSEIQIRLRVAFEGRRKFKGVLNGV 121 >gi|313896717|ref|ZP_07830265.1| conserved hypothetical protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312974634|gb|EFR40101.1| conserved hypothetical protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 149 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 31 PVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHY 90 PV E+ V + + E++ L+++++++ G + + DC LS+ + ILD E+ I Y Sbjct: 18 PVQPELEL--VDVEYVRERDWYLRVYIDKE-GGIDIEDCRTLSERLEEILDREDFIADAY 74 Query: 91 RLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKR 150 LEVSSPG+DR + + DF R +G V + K+ L G++ G L+ + R Sbjct: 75 ILEVSSPGLDRVLRKARDFEREHGKRVDVALYAPLDGKKNLTGELTGYDGNVLILDDDVR 134 >gi|310658998|ref|YP_003936719.1| hypothetical protein CLOST_1694 [Clostridium sticklandii DSM 519] gi|308825776|emb|CBH21814.1| conserved protein of unknown function [Clostridium sticklandii] Length = 152 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/124 (31%), Positives = 72/124 (58%), Gaps = 5/124 (4%) Query: 21 LAGDISSVIQPVIEEM---SFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAI 76 +A + +I+ ++ +M F V + ++E +L L+I++++ G M+L DC+ S I Sbjct: 1 MASKLELLIEGIVSDMITDPFELVDVEYVKEGSLKYLRIYIDKQ-GKMSLDDCQHFSHLI 59 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 S LD + IE +Y LE+SSPG+DR + ++ DF+R G V ++ + ++ G ++ Sbjct: 60 SEKLDELDPIEENYMLEISSPGLDRHLKKEKDFIREKGKEVELKLFKAIDGVKEFEGTLV 119 Query: 137 GTSE 140 G SE Sbjct: 120 GLSE 123 >gi|312869023|ref|ZP_07729200.1| conserved hypothetical protein [Lactobacillus oris PB013-T2-3] gi|311095449|gb|EFQ53716.1| conserved hypothetical protein [Lactobacillus oris PB013-T2-3] Length = 157 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 81/156 (51%), Gaps = 14/156 (8%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILD-V 82 ++ ++ P+++E F I ++E K+ L++++++D G +TL DC +S +S LD V Sbjct: 8 VTDLVTPILDEHHFYLYDIEFVKEGKSWYLRVYIDKD-GGITLDDCATVSDQLSEALDNV 66 Query: 83 E-NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE- 140 E + I Y LEVSSPG +RP+ ++D+ R H + + K+ G +M S+ Sbjct: 67 EPDPIPQAYFLEVSSPGAERPLKNEADYQRAVNHYIHVSLYQQIAGKKVYEGTLMELSDK 126 Query: 141 --TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 T F++K + Q+ I + ARL + Sbjct: 127 EMTLDFMDKTRHR-------QVVIDRSKVAKARLAI 155 >gi|157962880|ref|YP_001502914.1| hypothetical protein Spea_3062 [Shewanella pealeana ATCC 700345] gi|189039813|sp|A8H742|RIMP_SHEPA RecName: Full=Ribosome maturation factor rimP gi|157847880|gb|ABV88379.1| protein of unknown function DUF150 [Shewanella pealeana ATCC 700345] Length = 151 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 52/89 (58%), Gaps = 1/89 (1%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSD 108 K+ +L+++++ + G + + DC E S+ +S ++DVE+ I Y LEVSSPG+DRP+ Sbjct: 33 KHSILRLYIDNEKG-IFIEDCAEASRQVSAVMDVEDPISTEYTLEVSSPGVDRPLFTAEQ 91 Query: 109 FLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 + + G V ++ + + L G + G Sbjct: 92 YQAYIGETVKVQLTMPVAGSRNLKGTVTG 120 >gi|294624664|ref|ZP_06703334.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666763|ref|ZP_06731997.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292601020|gb|EFF45087.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603424|gb|EFF46841.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 196 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 66/121 (54%), Gaps = 6/121 (4%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFV-----ERDDGNMTLRDCEELSQA 75 A +I++++ P +E + + + L L++++ E+ + + + DCE +S+ Sbjct: 5 ATEIANLLSPTVESLGLELLGVEYLPAPGGATLRLYIDVPLAEQPERVINVDDCERVSRE 64 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LDVE+ I G+Y LEVSSPG+DRP+ F R G + L+ +++ G+I Sbjct: 65 VSAQLDVEDPISGNYTLEVSSPGVDRPLFTLEQFARHTGESAKIVLKLAQDGRRRFQGEI 124 Query: 136 M 136 + Sbjct: 125 L 125 >gi|34222833|sp|Q88DV5|RIMP_PSEPK RecName: Full=Ribosome maturation factor rimP Length = 158 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 60/98 (61%), Gaps = 2/98 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +++ PV+E + ++ I + + K+ +L+I+++++ G + + DCE +S+ S ILDVE Sbjct: 14 LQALLAPVVEGLGYQCWGIEYVSQGKHSVLRIYIDKE-GGILVDDCEAVSRQASAILDVE 72 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 + I Y LEVSSPG+DRP+ F G V ++ Sbjct: 73 DPISSEYTLEVSSPGMDRPLFTLEQFASHAGEQVKIKL 110 >gi|242309141|ref|ZP_04808296.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] gi|239524182|gb|EEQ64048.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] Length = 143 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 73/129 (56%), Gaps = 6/129 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M ++ ++ + IQ ++E + I+ L+E +N +L+I + + +++L DC+E+S A+S Sbjct: 1 MLISQELQAKIQKLVESFGCKIYDITTLKENENQILRISITKK-PSVSLDDCQEVSLALS 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 P+LDVE Y LEVSSPGI+RP+ K F G ++ + + KQ GK++ Sbjct: 60 PLLDVEIPNFEKYYLEVSSPGIERPLKTKEHFEDAIGELIKIKTI----SKQDFKGKLIA 115 Query: 138 TSETGFFLE 146 + LE Sbjct: 116 IDDESLKLE 124 >gi|120597898|ref|YP_962472.1| hypothetical protein Sputw3181_1068 [Shewanella sp. W3-18-1] gi|146293930|ref|YP_001184354.1| hypothetical protein Sputcn32_2836 [Shewanella putrefaciens CN-32] gi|166977876|sp|A1RGX3|RIMP_SHESW RecName: Full=Ribosome maturation factor rimP gi|166988527|sp|A4Y9C2|RIMP_SHEPC RecName: Full=Ribosome maturation factor rimP gi|120557991|gb|ABM23918.1| protein of unknown function DUF150 [Shewanella sp. W3-18-1] gi|145565620|gb|ABP76555.1| protein of unknown function DUF150 [Shewanella putrefaciens CN-32] gi|319427307|gb|ADV55381.1| protein of unknown function DUF150 [Shewanella putrefaciens 200] Length = 151 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 59/104 (56%), Gaps = 2/104 (1%) Query: 33 IEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYR 91 +E + F+ I ++ K+ +L++F++ ++G + + DC S+ +S +LDVE+ I Y Sbjct: 16 VEALGFQLWGIEYVQAGKHSILRVFIDGENG-INIEDCANTSRQVSAVLDVEDPISTEYT 74 Query: 92 LEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LEVSSPG+DRP+ + + G V ++ + + L G I Sbjct: 75 LEVSSPGVDRPLFTAEQYAAYVGEDVKVQLTMPVAGSRNLKGAI 118 >gi|34558305|ref|NP_908120.1| hypothetical protein WS2018 [Wolinella succinogenes DSM 1740] gi|51316745|sp|Q7MQU0|RIMP_WOLSU RecName: Full=Ribosome maturation factor rimP gi|34484024|emb|CAE11020.1| conserved hypothetical protein [Wolinella succinogenes] Length = 142 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/105 (35%), Positives = 62/105 (59%), Gaps = 5/105 (4%) Query: 45 LLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMV 104 L E + +L++++ ++ G ++L DC +S ISP+LDVE+ + G Y LEVSSPGI+RP+ Sbjct: 27 LKENERSILRLYITKEVG-VSLDDCAMVSDLISPLLDVEDPLAGEYFLEVSSPGIERPLK 85 Query: 105 RKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEK 149 R + + G + + DK ++ G+I ET L+ E+ Sbjct: 86 RPAHYQHALGELAR----IKFADKNEIEGEIEAADETSVKLKGEE 126 >gi|117618499|ref|YP_857796.1| 15 kDa protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559906|gb|ABK36854.1| 15 kDa protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 175 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 56/87 (64%), Gaps = 1/87 (1%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSD 108 K+ L+++++ + G +++ +C E+S + I+DVE+ I Y LEVSSPG+DRP+ + + Sbjct: 56 KHSTLRVYIDGEHG-VSVENCAEVSHQVGAIMDVEDPITEEYYLEVSSPGLDRPLFKVAQ 114 Query: 109 FLRWNGHVVACEIVLSSGDKQKLIGKI 135 F ++ G A + +++ +++K G I Sbjct: 115 FEKYVGQEAAVTLRMATNNRRKFKGVI 141 >gi|319649524|ref|ZP_08003680.1| hypothetical protein HMPREF1013_00284 [Bacillus sp. 2_A_57_CT2] gi|317398686|gb|EFV79368.1| hypothetical protein HMPREF1013_00284 [Bacillus sp. 2_A_57_CT2] Length = 155 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 61/94 (64%), Gaps = 2/94 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ P+++E++ V I ++E K+ L++F++++ G + + +C +S+ +S LD E Sbjct: 8 VEQLVTPIVDELNLELVDIEYVKEGKDWFLRVFIDKETG-VDIEECGTVSERLSEKLDAE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + I +Y LEVSSPG +RP+ + SDF++ G V Sbjct: 67 DPIPYNYFLEVSSPGAERPLKKDSDFVKAVGKNV 100 >gi|154686076|ref|YP_001421237.1| hypothetical protein RBAM_016430 [Bacillus amyloliquefaciens FZB42] gi|189038972|sp|A7Z4T0|RIMP_BACA2 RecName: Full=Ribosome maturation factor rimP gi|154351927|gb|ABS74006.1| YlxS [Bacillus amyloliquefaciens FZB42] Length = 156 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 82/152 (53%), Gaps = 6/152 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + + QP+++++ V I ++E +N L++F++ ++G + + +C ++S+A+S LD Sbjct: 9 VQEMAQPILDDLQLELVDIEFVKEGQNWFLRVFIDSENG-VDIEECAKVSEALSEKLDEA 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I +Y LEVSSPG +RP+ +K+DF + G V + + GK+ Sbjct: 68 DPITQNYFLEVSSPGAERPLKKKADFEKSLGKNVYMKTYEPIDGLKVFEGKLAEFDGQTV 127 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +E + K ++ I ++ + +ARL VT Sbjct: 128 TIEMTVKTRKK----RVNIPYEKIANARLAVT 155 >gi|145638848|ref|ZP_01794456.1| hypothetical protein CGSHiII_01640 [Haemophilus influenzae PittII] gi|145271820|gb|EDK11729.1| hypothetical protein CGSHiII_01640 [Haemophilus influenzae PittII] gi|309750829|gb|ADO80813.1| 30S ribosomal maturation protein RimP [Haemophilus influenzae R2866] Length = 151 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 56/85 (65%), Gaps = 1/85 (1%) Query: 51 LLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFL 110 + +++F++++ G +T+ +C ++S+ +S ILDVE+ I Y LEVSSPG+DRP+ F Sbjct: 35 MTVRLFIDKE-GGVTVDNCADVSRQVSAILDVEDPIADKYNLEVSSPGLDRPLFTLPQFE 93 Query: 111 RWNGHVVACEIVLSSGDKQKLIGKI 135 R+ G +A + + +++K GK+ Sbjct: 94 RYIGQDIAVHLRIPVMERRKWQGKL 118 >gi|154249423|ref|YP_001410248.1| hypothetical protein Fnod_0736 [Fervidobacterium nodosum Rt17-B1] gi|259585774|sp|A7HL08|RIMP_FERNB RecName: Full=Ribosome maturation factor rimP gi|154153359|gb|ABS60591.1| protein of unknown function DUF150 [Fervidobacterium nodosum Rt17-B1] Length = 152 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 1/91 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ +P++ M + ++ +L I +++ D ++ RDCE +S I +LD Sbjct: 12 VRAIAEPIVTSMGLELFDVKYRIQAGKWVLSIIIDKLDDYVSTRDCELVSYEIEKVLDSH 71 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNG 114 + I G Y LEVSSPG+DRP+ + DF R+ G Sbjct: 72 DFIPGRYYLEVSSPGLDRPLKKIEDFRRFVG 102 >gi|261416679|ref|YP_003250362.1| protein of unknown function DUF150 [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373135|gb|ACX75880.1| protein of unknown function DUF150 [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326580|gb|ADL25781.1| conserved hypothetical protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 150 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 80/145 (55%), Gaps = 18/145 (12%) Query: 37 SFRSVQISLLEE------KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE-NIIEGH 89 + +S ++L+E K L+IF+++ +G +T+ DC +S +S LD++ +IEG Sbjct: 14 ACKSASVTLVEADVFRAGKRKTLRIFIDKPEG-VTIDDCTNVSHFLSDALDLDPELIEGA 72 Query: 90 YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEK 149 Y LEVSSPGIDRP+ +DF R G ++ + S+G + + G+++ E L+ + Sbjct: 73 YTLEVSSPGIDRPLKSMADFERNKGRLL--RVTRSTG--KPVTGELLNADEENLTLKLKG 128 Query: 150 RGEKDMNELQIAISFDSLLSARLIV 174 N +I I +LSA++ V Sbjct: 129 ------NAGEIVIPRSEVLSAKVEV 147 >gi|66767927|ref|YP_242689.1| hypothetical protein XC_1603 [Xanthomonas campestris pv. campestris str. 8004] gi|81306096|sp|Q4UWA4|RIMP_XANC8 RecName: Full=Ribosome maturation factor rimP gi|66573259|gb|AAY48669.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] Length = 196 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 66/121 (54%), Gaps = 6/121 (4%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFV-----ERDDGNMTLRDCEELSQA 75 A +I++++ P +E + + + L L++++ E+ D + + DCE +S+ Sbjct: 5 ATEIANLLGPTVESLGLELLGVEYLPAPGGATLRLYIDVPLAEQPDRIINVDDCERVSRE 64 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LDVE+ I G+Y LEVSSPG+DRP+ F R G + L+ +++ G+I Sbjct: 65 VSAQLDVEDPISGNYTLEVSSPGVDRPLFTLDQFARHVGESAKIVLKLAQDGRRRFQGQI 124 Query: 136 M 136 + Sbjct: 125 V 125 >gi|207723238|ref|YP_002253637.1| hypothetical protein RSMK00472 [Ralstonia solanacearum MolK2] gi|206588434|emb|CAQ35397.1| conserved hypothetical protein [Ralstonia solanacearum MolK2] Length = 144 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 32/93 (34%), Positives = 56/93 (60%), Gaps = 5/93 (5%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHY-RLEVSSPGIDRPMVRKSDFL 110 LL++++++ + + + DCE++S ++ + +VEN+ HY RLEVSSPG+DRP+ +DF Sbjct: 10 LLRVYIDQAETGIVIEDCEKVSHQLTRVFEVENV---HYERLEVSSPGLDRPLRTLTDFT 66 Query: 111 RWNGHVVACEIVLSSGDKQKLIGKIMG-TSETG 142 R+ G V + L ++ G + T E G Sbjct: 67 RFAGQEVKVTLRLPVEGQKNFTGIVQAPTGEPG 99 >gi|295696155|ref|YP_003589393.1| protein of unknown function DUF150 [Bacillus tusciae DSM 2912] gi|295411757|gb|ADG06249.1| protein of unknown function DUF150 [Bacillus tusciae DSM 2912] Length = 154 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 1/98 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 +A + + +P++E V + ++E N L++FV+R +G + + DC +S+ +S Sbjct: 6 IAAVVEEIARPIVEGEGLELVDVEYVKEGANWFLRVFVDRPEGGVDIDDCSRVSERLSDR 65 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 LD + I G Y LEVSSPGI+RP+ F R G V Sbjct: 66 LDEIDPIPGSYFLEVSSPGIERPLKNMPAFRRALGQTV 103 >gi|284006666|emb|CBA71928.1| conserved hypothetical protein [Arsenophonus nasoniae] Length = 150 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 70/120 (58%), Gaps = 1/120 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++S+I +E + F V + + + L+++++ ++G +T+ DC ++S +S +L Sbjct: 4 LEQKLTSMISVPVEALGFEFVGLEFIRARVSTLRVYIDNENG-VTVDDCADVSHQVSAVL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LE+SSPG++RP+ + + R+ G V + ++ +++K G I ++ Sbjct: 63 DVEDPISVLYNLEISSPGLERPLFTVAHYQRFIGKEVNLILRIAMQNRRKWQGIIKAVND 122 >gi|303256974|ref|ZP_07342988.1| DUF150-containing protein [Burkholderiales bacterium 1_1_47] gi|330999162|ref|ZP_08322881.1| hypothetical protein HMPREF9439_00503 [Parasutterella excrementihominis YIT 11859] gi|302860465|gb|EFL83542.1| DUF150-containing protein [Burkholderiales bacterium 1_1_47] gi|329575362|gb|EGG56906.1| hypothetical protein HMPREF9439_00503 [Parasutterella excrementihominis YIT 11859] Length = 186 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 62/103 (60%), Gaps = 5/103 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 M ++ + +I +E + + V + L L+++ +++D G +TL DCE++S ++ Sbjct: 1 MAVSTQLFEMIDATVEGLGYELVDVEKLPRG--LIRVTIDKD-GGITLDDCEKVSNQLNN 57 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 + VEN+ + RLEVSSPG+DRP+ R DF+++ G V E+ Sbjct: 58 AMTVENV--DYDRLEVSSPGVDRPLKRPRDFVKFVGQNVHVEL 98 >gi|255284073|ref|ZP_05348628.1| hypothetical protein BRYFOR_09459 [Bryantella formatexigens DSM 14469] gi|255265418|gb|EET58623.1| hypothetical protein BRYFOR_09459 [Bryantella formatexigens DSM 14469] Length = 201 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 59/92 (64%), Gaps = 2/92 (2%) Query: 27 SVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVENI 85 +++QP+++ F V + ++E + L+ ++++ G +T+ DCE +S+A + ILD ++ Sbjct: 59 AILQPIVDANGFELVDVEYVKEGGSWYLRAYIDKP-GGITVDDCELVSRAANDILDEQDF 117 Query: 86 IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 +E Y EVSSPG+ RP+ ++ DF+R G V Sbjct: 118 VEESYIFEVSSPGLGRPLKKEKDFVRSIGEEV 149 >gi|167037625|ref|YP_001665203.1| hypothetical protein Teth39_1213 [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|307264911|ref|ZP_07546473.1| protein of unknown function DUF150 [Thermoanaerobacter wiegelii Rt8.B1] gi|320116040|ref|YP_004186199.1| hypothetical protein Thebr_1242 [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|326389439|ref|ZP_08211006.1| protein of unknown function DUF150 [Thermoanaerobacter ethanolicus JW 200] gi|226696278|sp|B0K9Q4|RIMP_THEP3 RecName: Full=Ribosome maturation factor rimP gi|166856459|gb|ABY94867.1| protein of unknown function DUF150 [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|306920169|gb|EFN50381.1| protein of unknown function DUF150 [Thermoanaerobacter wiegelii Rt8.B1] gi|319929131|gb|ADV79816.1| protein of unknown function DUF150 [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|325994444|gb|EGD52869.1| protein of unknown function DUF150 [Thermoanaerobacter ethanolicus JW 200] Length = 151 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 76/138 (55%), Gaps = 3/138 (2%) Query: 26 SSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ PV+E+ +F V + +E + L+++++++ G +TL DC+ +S+ +S LD + Sbjct: 9 KDLVMPVLEKNNFELVDVEYKKEGSHWYLRVYIDKE-GGITLDDCQLVSEYLSDRLDEVD 67 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG-TSETGF 143 IE Y LEVSSPG+DRP+ + DF R G + + ++K G+++ T + Sbjct: 68 PIEHSYILEVSSPGLDRPLKKPRDFERNIGKEIEISLYAPIDKRKKFEGELIEFTGDKII 127 Query: 144 FLEKEKRGEKDMNELQIA 161 L +R E DM + + Sbjct: 128 ILYNGERKEFDMKNVSLV 145 >gi|259585711|sp|A0KNE5|RIMP_AERHH RecName: Full=Ribosome maturation factor rimP Length = 152 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 56/87 (64%), Gaps = 1/87 (1%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSD 108 K+ L+++++ + G +++ +C E+S + I+DVE+ I Y LEVSSPG+DRP+ + + Sbjct: 33 KHSTLRVYIDGEHG-VSVENCAEVSHQVGAIMDVEDPITEEYYLEVSSPGLDRPLFKVAQ 91 Query: 109 FLRWNGHVVACEIVLSSGDKQKLIGKI 135 F ++ G A + +++ +++K G I Sbjct: 92 FEKYVGQEAAVTLRMATNNRRKFKGVI 118 >gi|257463890|ref|ZP_05628276.1| putative cytoplasmic protein [Fusobacterium sp. D12] gi|317061419|ref|ZP_07925904.1| conserved hypothetical protein [Fusobacterium sp. D12] gi|313687095|gb|EFS23930.1| conserved hypothetical protein [Fusobacterium sp. D12] Length = 153 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 56/91 (61%), Gaps = 3/91 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I ++ P E++ V + +++ ++I+VE+ DG++ L DC LS I +D Sbjct: 8 IEKIVTPEAEKLGLSLVDVEYMQDGGYWYVRIYVEKLDGDVNLEDCANLSGNIEDAVD-- 65 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNG 114 +I+ + LEVSSPGI+RP+ +++DF+R+ G Sbjct: 66 QLIDKKFFLEVSSPGIERPLKKEADFIRFTG 96 >gi|254283179|ref|ZP_04958147.1| conserved hypothetical protein [gamma proteobacterium NOR51-B] gi|219679382|gb|EED35731.1| conserved hypothetical protein [gamma proteobacterium NOR51-B] Length = 168 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 64/115 (55%), Gaps = 2/115 (1%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 G +S ++ P IE + F + LL + +++++R++G +T+ DC +S+ IS Sbjct: 3 GKTTQLSELLTPTIESLGFELWGLELLPPFRKPTFRVYIDREEG-VTVDDCAMVSRHISG 61 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 +LDVE+ I+ + LEVSSPGIDR + R + + G + + + ++K G Sbjct: 62 VLDVEDPIQTEFTLEVSSPGIDRLLFRPEQYRLYIGEPIEVRLRMPFEGRRKFRG 116 >gi|21231946|ref|NP_637863.1| hypothetical protein XCC2513 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|188991043|ref|YP_001903053.1| hypothetical protein xccb100_1647 [Xanthomonas campestris pv. campestris str. B100] gi|34223123|sp|Q8P7U5|RIMP_XANCP RecName: Full=Ribosome maturation factor rimP gi|226736393|sp|B0RRB2|RIMP_XANCB RecName: Full=Ribosome maturation factor rimP gi|21113675|gb|AAM41787.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|167732803|emb|CAP50997.1| YhbC family protein [Xanthomonas campestris pv. campestris] Length = 196 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 66/121 (54%), Gaps = 6/121 (4%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFV-----ERDDGNMTLRDCEELSQA 75 A +I++++ P +E + + + L L++++ E+ D + + DCE +S+ Sbjct: 5 ATEIANLLGPTVESLGLELLGVEYLPAPGGATLRLYIDVPLAEQPDRIINVDDCERVSRE 64 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LDVE+ I G+Y LEVSSPG+DRP+ F R G + L+ +++ G+I Sbjct: 65 VSAQLDVEDPISGNYTLEVSSPGVDRPLFTLDQFARHVGESAKIVLKLAQDGRRRFQGQI 124 Query: 136 M 136 + Sbjct: 125 V 125 >gi|15836838|ref|NP_297526.1| hypothetical protein XF0233 [Xylella fastidiosa 9a5c] gi|9105044|gb|AAF83046.1|AE003877_1 conserved hypothetical protein [Xylella fastidiosa 9a5c] Length = 215 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 83/157 (52%), Gaps = 14/157 (8%) Query: 24 DISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVE-----RDDGNMTLRDCEELSQAIS 77 +I +++ P +E + F + LL +L+++++ + + +++ DCE +S+ +S Sbjct: 23 EIVNLLAPKVETLGFELLGAEYLLVPSGAILRLYIDTPFAMQPECMVSIDDCERVSREVS 82 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LDVE I G+Y LEVSSPG+DR + F R V + L ++L GKI+ Sbjct: 83 AYLDVEEPISGNYTLEVSSPGLDRRLFTLEQFARHYNQFVKVGLKLPQHGSRRLQGKIVR 142 Query: 138 TSET-GFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + GF + +N +++A+ F+++ AR++ Sbjct: 143 VEQVDGFVVLL-------VNGVELAVDFNNIDKARIV 172 >gi|153814922|ref|ZP_01967590.1| hypothetical protein RUMTOR_01137 [Ruminococcus torques ATCC 27756] gi|317500434|ref|ZP_07958658.1| ribosome maturation factor rimP [Lachnospiraceae bacterium 8_1_57FAA] gi|331089559|ref|ZP_08338458.1| ribosome maturation factor rimP [Lachnospiraceae bacterium 3_1_46FAA] gi|145847953|gb|EDK24871.1| hypothetical protein RUMTOR_01137 [Ruminococcus torques ATCC 27756] gi|316898189|gb|EFV20236.1| ribosome maturation factor rimP [Lachnospiraceae bacterium 8_1_57FAA] gi|330404927|gb|EGG84465.1| ribosome maturation factor rimP [Lachnospiraceae bacterium 3_1_46FAA] Length = 155 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 71/136 (52%), Gaps = 2/136 (1%) Query: 28 VIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 +++P++ + F V + ++E L+ ++++ G +T+ DCE +S+ S ILD ++ I Sbjct: 14 LLEPIVSALGFELVDVEYVKEAGTWYLRAYIDKP-GGITVDDCEAVSRKFSDILDEKDYI 72 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE 146 Y EVSSPG+ RP+ ++ DF R G V + +++ G + G E + Sbjct: 73 PDSYVFEVSSPGLGRPLKKEKDFKRSIGEEVEIRTYRAIDRQKEFTGILKGFDENTVTII 132 Query: 147 KEKRGEKDMNELQIAI 162 E E+ + +IA+ Sbjct: 133 YEDETEQVFDRAEIAL 148 >gi|299144045|ref|ZP_07037125.1| 15 kDa protein [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518530|gb|EFI42269.1| 15 kDa protein [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 153 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 36/97 (37%), Positives = 58/97 (59%), Gaps = 2/97 (2%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSD 108 K+ LL IF+ + +G + + DC +S+ I ILD E+II+ Y LE+SSPG+DRP+ K D Sbjct: 35 KHDLLSIFIYKKEG-IDINDCTNMSRIIESILDKEDIIDKPYYLEISSPGLDRPLKTKDD 93 Query: 109 FLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFL 145 + R G+ V ++ + D +KLI I+ + + Sbjct: 94 YRRNVGNEVTVKL-YAPLDGKKLIEGILENYDESIII 129 >gi|300704338|ref|YP_003745941.1| hypothetical protein RCFBP_20140 [Ralstonia solanacearum CFBP2957] gi|299072002|emb|CBJ43332.1| conserved protein of unknown function [Ralstonia solanacearum CFBP2957] Length = 149 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 54/89 (60%), Gaps = 4/89 (4%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHY-RLEVSSPGIDRPMVRKSDFL 110 LL++++++ + + + DCE++S ++ + +VEN+ HY RLEVSSPG+DRP+ +DF Sbjct: 15 LLRVYIDQAETGIVIEDCEKVSHQLTRVFEVENV---HYERLEVSSPGLDRPLRTLTDFT 71 Query: 111 RWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 R+ G V + L ++ G + + Sbjct: 72 RFAGQEVKVTLRLPVDGQKNFTGIVQAPA 100 >gi|223038669|ref|ZP_03608962.1| conserved hypothetical protein [Campylobacter rectus RM3267] gi|222880071|gb|EEF15159.1| conserved hypothetical protein [Campylobacter rectus RM3267] Length = 142 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 36/99 (36%), Positives = 60/99 (60%), Gaps = 6/99 (6%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 + +I++ + G + L DCE++S+ +SPI DVE + G Y LEVSSPG++R + + S F+ Sbjct: 28 IYRIYIAKP-GGVNLDDCEKVSRLLSPIFDVEPPLSGDYVLEVSSPGLERKLEKPSHFIS 86 Query: 112 WNGHV--VACEIVLSSGDKQKLIGKIMGTSETGFFLEKE 148 G + ++ E+ G+ +KL GKI+ + LE E Sbjct: 87 SVGELAKISAEV---DGENKKLKGKILSADDDETSLESE 122 >gi|289207908|ref|YP_003459974.1| hypothetical protein TK90_0723 [Thioalkalivibrio sp. K90mix] gi|288943539|gb|ADC71238.1| protein of unknown function DUF150 [Thioalkalivibrio sp. K90mix] Length = 151 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 74/145 (51%), Gaps = 3/145 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +++ PV+E F + K ++L+I+++ +G +T+ DC +S+ +L+VE Sbjct: 8 LKTLLAPVVEGQGFVFWGLEYHPGSKPVMLRIYIDSPEG-VTVDDCALVSEQAGAVLEVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + G+Y LEVSSPGI+RP+ + + GH V + ++ G ++G E Sbjct: 67 QALRGNYTLEVSSPGIERPLFTPDQYRGYIGHPVKVRLSWPEHGRRNYRGTLIGVDEEMI 126 Query: 144 FLEKEKRG-EKDMNELQIAISFDSL 167 +E + G E +N + A + L Sbjct: 127 EVEVDGTGYELPLNAIHNARVLEQL 151 >gi|167766536|ref|ZP_02438589.1| hypothetical protein CLOSS21_01042 [Clostridium sp. SS2/1] gi|167711659|gb|EDS22238.1| hypothetical protein CLOSS21_01042 [Clostridium sp. SS2/1] Length = 154 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 64/104 (61%), Gaps = 3/104 (2%) Query: 28 VIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 ++ P+IE +F V + ++E N L+++ +++ G + + DC +S+++ LD E+ I Sbjct: 14 LVLPIIEANNFELVDVEYVKEGANWYLRVYADKE-GGIAIDDCVLISRSLEEKLDAEDFI 72 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 E Y LEVSSPG+ RP+ ++ D++R G + ++ + DKQK Sbjct: 73 EDAYILEVSSPGLGRPLKKEKDYVRSVGKSIDIKL-YKAIDKQK 115 >gi|15895074|ref|NP_348423.1| hypothetical protein CA_C1798 [Clostridium acetobutylicum ATCC 824] gi|34223132|sp|Q97I55|RIMP_CLOAB RecName: Full=Ribosome maturation factor rimP gi|15024771|gb|AAK79763.1|AE007689_1 Uncharacterized protein, YhbC family [Clostridium acetobutylicum ATCC 824] gi|325509212|gb|ADZ20848.1| Conserved hypothetical protein [Clostridium acetobutylicum EA 2018] Length = 149 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 69/114 (60%), Gaps = 2/114 (1%) Query: 28 VIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 +I+PV+E + + I +++E L++++++++G ++L DCE++S+AIS +LD ++ I Sbjct: 8 IIRPVVESLGYEFYHIEIVKEDGERYLRVYIDKENG-ISLDDCEKVSRAISDLLDEKDPI 66 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 Y LEVSSPGI R + + ++ G+ V ++ S GK++ +E Sbjct: 67 PYSYYLEVSSPGIYRTLFTEEHLKKYIGNTVDIKLKSSLEKSTNYSGKLIDVNE 120 >gi|262197039|ref|YP_003268248.1| hypothetical protein Hoch_3856 [Haliangium ochraceum DSM 14365] gi|262080386|gb|ACY16355.1| protein of unknown function DUF150 [Haliangium ochraceum DSM 14365] Length = 209 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 57/104 (54%), Gaps = 14/104 (13%) Query: 28 VIQPVIEEMSFRSVQISLLEEK-NLLLQIFVER-------------DDGNMTLRDCEELS 73 + +PV + V +SL + + L+Q+F++ + ++L DCE +S Sbjct: 39 IAEPVCASAGYELVDLSLTQSRVGWLVQVFIDHMHSDETSTVAGGEEASEVSLEDCEHVS 98 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + +S +LDVE+ + Y LEVSSPG+DRP+ + F R+ GH V Sbjct: 99 RELSAVLDVEDPLPFAYNLEVSSPGLDRPLRTVAHFQRFAGHEV 142 >gi|332283700|ref|YP_004415611.1| hypothetical protein PT7_0447 [Pusillimonas sp. T7-7] gi|330427653|gb|AEC18987.1| hypothetical protein PT7_0447 [Pusillimonas sp. T7-7] Length = 164 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 87/161 (54%), Gaps = 20/161 (12%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILD 81 DI ++ Q I M V++ +E L LL++ ++R +G + + DCE++S+ +S + + Sbjct: 2 ADIFALTQEAIAGMD---VELVDVERAPLGLLRVTIDRAEG-VRIEDCEQVSKHLSRVFE 57 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG-DKQKLIGKIMGTSE 140 VENI + RLEV SPGIDRP+ R +DF+R+ V EI L D +K+ ++ SE Sbjct: 58 VENI--DYKRLEVGSPGIDRPLKRVADFIRFANERV--EIKLREAIDNRKVYAGVLRVSE 113 Query: 141 T---------GFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 F LE E K+ ++ + +FD + A+L Sbjct: 114 NVASDPSANPVFGLELEPTSRKEPAQV-LDFAFDDVDRAKL 153 >gi|259016316|sp|Q9PGR5|RIMP_XYLFA RecName: Full=Ribosome maturation factor rimP Length = 199 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 83/157 (52%), Gaps = 14/157 (8%) Query: 24 DISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVE-----RDDGNMTLRDCEELSQAIS 77 +I +++ P +E + F + LL +L+++++ + + +++ DCE +S+ +S Sbjct: 7 EIVNLLAPKVETLGFELLGAEYLLVPSGAILRLYIDTPFAMQPECMVSIDDCERVSREVS 66 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LDVE I G+Y LEVSSPG+DR + F R V + L ++L GKI+ Sbjct: 67 AYLDVEEPISGNYTLEVSSPGLDRRLFTLEQFARHYNQFVKVGLKLPQHGSRRLQGKIVR 126 Query: 138 TSET-GFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + GF + +N +++A+ F+++ AR++ Sbjct: 127 VEQVDGFVVLL-------VNGVELAVDFNNIDKARIV 156 >gi|118443860|ref|YP_878212.1| hypothetical protein NT01CX_2139 [Clostridium novyi NT] gi|259585741|sp|A0Q0R0|RIMP_CLONN RecName: Full=Ribosome maturation factor rimP gi|118134316|gb|ABK61360.1| Hypothetical UPF0090 protein [Clostridium novyi NT] Length = 154 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 74/127 (58%), Gaps = 4/127 (3%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDV 82 +I+ +I+P++EE+++ I + E+N L+I+++ G + L DCE++S+ +S ILD Sbjct: 10 EINKLIKPIVEELNYELYYIEYVREQNENYLRIYIDSSKG-INLEDCEKVSRKVSDILDE 68 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRW-NGHVVACEIVLSSGDKQKLIGKIMGTSET 141 ++ I Y LEVSSPGI+R + + ++ N ++ L G ++ G ++ ++ Sbjct: 69 KDPISDSYYLEVSSPGIERVLYTEEHLHKYTNNQIIVKLAKLFEGSREHQ-GNLISFNDD 127 Query: 142 GFFLEKE 148 +EKE Sbjct: 128 TVTIEKE 134 >gi|302878487|ref|YP_003847051.1| hypothetical protein Galf_1259 [Gallionella capsiferriformans ES-2] gi|302581276|gb|ADL55287.1| protein of unknown function DUF150 [Gallionella capsiferriformans ES-2] Length = 141 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 71/124 (57%), Gaps = 11/124 (8%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 LL++F+++ DG + + DC+ +S ++ + VENI + RLEVSSPG+DR + +++DF+R Sbjct: 28 LLRVFIDKPDG-IAVEDCQVVSNQLTRLFTVENI--DYDRLEVSSPGLDRALKKEADFIR 84 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 + G ++ + ++ IG ++G G + D+ + +AI ++ AR Sbjct: 85 FVGQKAQIKLRMPIAARKNFIG-VIGEINDGVL-------QLDVEGVPVAIELTNVDKAR 136 Query: 172 LIVT 175 L+ T Sbjct: 137 LVPT 140 >gi|58427438|gb|AAW76475.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 160 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 60/111 (54%), Gaps = 8/111 (7%) Query: 64 MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVL 123 + + DCE +S+ +S LDVE+ I GHY LEVSSPG+DRP+ F R G + L Sbjct: 17 INVDDCERVSREVSAQLDVEDPISGHYTLEVSSPGVDRPLFTLEQFARHAGESTKIVLKL 76 Query: 124 SSGDKQKLIGKIMG-TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + +++ G+I+ +E G + ++ + I FD++ AR++ Sbjct: 77 AQDGRRRFQGEILRIDAEAGAVVFA-------IDGKDVQIGFDNIDKARIL 120 >gi|163802302|ref|ZP_02196196.1| hypothetical protein 1103602000417_AND4_14441 [Vibrio sp. AND4] gi|159173831|gb|EDP58645.1| hypothetical protein AND4_14441 [Vibrio sp. AND4] Length = 151 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 70/117 (59%), Gaps = 2/117 (1%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 GL ++ +++ +E + + V + + + L+I+++ ++G + + C E+S +S Sbjct: 3 GLERQLTEMLEAPVEALGYELVGLEFIRAGAHSTLRIYIDHENG-INVDACAEVSHQVSA 61 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +LDVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ +++K G I Sbjct: 62 VLDVEDPISVAYSLEVSSPGLERPLFKATHYEQFIGHEVSIVLKMAVANRRKWNGII 118 >gi|167040286|ref|YP_001663271.1| hypothetical protein Teth514_1649 [Thermoanaerobacter sp. X514] gi|300914370|ref|ZP_07131686.1| protein of unknown function DUF150 [Thermoanaerobacter sp. X561] gi|307724394|ref|YP_003904145.1| hypothetical protein Thet_1251 [Thermoanaerobacter sp. X513] gi|226736395|sp|B0K1E0|RIMP_THEPX RecName: Full=Ribosome maturation factor rimP gi|166854526|gb|ABY92935.1| protein of unknown function DUF150 [Thermoanaerobacter sp. X514] gi|300889305|gb|EFK84451.1| protein of unknown function DUF150 [Thermoanaerobacter sp. X561] gi|307581455|gb|ADN54854.1| protein of unknown function DUF150 [Thermoanaerobacter sp. X513] Length = 151 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 76/138 (55%), Gaps = 3/138 (2%) Query: 26 SSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ P++E+ +F V + +E + L+++++++ G +TL DC+ +S+ +S LD + Sbjct: 9 KDLVMPILEKNNFELVDVEYKKEGSHWYLRVYIDKE-GGITLDDCQLVSEYLSDRLDEVD 67 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG-TSETGF 143 IE Y LEVSSPG+DRP+ + DF R G + + ++K G+++ T + Sbjct: 68 PIEHSYILEVSSPGLDRPLKKPRDFERNIGKEIEISLYTPIDKRKKFEGELIEFTGDKII 127 Query: 144 FLEKEKRGEKDMNELQIA 161 L +R E DM + + Sbjct: 128 ILYNGERKEFDMKNVSLV 145 >gi|224438171|ref|ZP_03659106.1| hypothetical protein HcinC1_09335 [Helicobacter cinaedi CCUG 18818] gi|313144616|ref|ZP_07806809.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] gi|313129647|gb|EFR47264.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] Length = 156 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 16/123 (13%) Query: 53 LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRW 112 +Q +D ++L+DC+ LS+ +SP+LDVE+I +Y LEVSSPG+DR + + + Sbjct: 45 MQNLSSKDSNAVSLQDCQILSELLSPLLDVEHINMDNYHLEVSSPGLDRILKKPQHYAFS 104 Query: 113 NGHVVACEIVLSSGDKQKLIGKI--MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 G +++ +++ DK L G + + +E ++KEK I I F S+ A Sbjct: 105 LGEMISLKLI----DKSSLQGILENVNDTEIALLVDKEK----------INIPFSSIKKA 150 Query: 171 RLI 173 ++I Sbjct: 151 KVI 153 >gi|88860546|ref|ZP_01135184.1| hypothetical protein PTD2_16017 [Pseudoalteromonas tunicata D2] gi|88817744|gb|EAR27561.1| hypothetical protein PTD2_16017 [Pseudoalteromonas tunicata D2] Length = 141 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 29/110 (26%), Positives = 65/110 (59%), Gaps = 2/110 (1%) Query: 28 VIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 +++P +E + F + + +++ ++ L+++++ +G + + +C ++S+ +S ILDVE+ I Sbjct: 1 MLEPAVEALGFELLGLEVVQAGRDSTLRLYIDHANG-INVDNCADVSRQVSAILDVEDPI 59 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 Y LEVSSPG+DRP+ + F++ G + L ++ G ++ Sbjct: 60 TNEYNLEVSSPGLDRPLFKPEHFIKAQGEEIRLRTKLPQDGRRNFKGDLI 109 >gi|188577682|ref|YP_001914611.1| hypothetical protein PXO_01301 [Xanthomonas oryzae pv. oryzae PXO99A] gi|188522134|gb|ACD60079.1| YhbC family protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 176 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 8/119 (6%) Query: 56 FVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGH 115 E+ + + + DCE +S+ +S LDVE+ I GHY LEVSSPG+DRP+ F R G Sbjct: 25 LAEQPERVINVDDCERVSREVSAQLDVEDPISGHYTLEVSSPGVDRPLFTLEQFARHAGE 84 Query: 116 VVACEIVLSSGDKQKLIGKIMG-TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + L+ +++ G+I+ +E G + ++ + I FD++ AR++ Sbjct: 85 STKIVLKLAQDGRRRFQGEILRIDAEAGAVVFA-------IDGKDVQIGFDNIDKARIL 136 >gi|283797336|ref|ZP_06346489.1| hypothetical protein CLOM621_07330 [Clostridium sp. M62/1] gi|291075008|gb|EFE12372.1| hypothetical protein CLOM621_07330 [Clostridium sp. M62/1] gi|295090488|emb|CBK76595.1| Uncharacterized protein conserved in bacteria [Clostridium cf. saccharolyticum K10] Length = 155 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 70/139 (50%), Gaps = 2/139 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + + + P++E+ F V + + E L L+ +++++ G +T+ DCE +S+ + LD E Sbjct: 11 VEAWLLPLLEKYKFELVDVEYVREAGLWYLRAYIDKE-GGITVDDCEVVSRELGDWLDKE 69 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I Y LEVSSPG+ RP+ ++ DF R G V + +++ G + Sbjct: 70 DFIADSYILEVSSPGLGRPLKKEKDFARSLGKAVEVRLYRPINRQKEFTGALKAYDADTV 129 Query: 144 FLEKEKRGEKDMNELQIAI 162 L E E + + IA+ Sbjct: 130 TLSMEDESELVLEKSDIAL 148 >gi|116748666|ref|YP_845353.1| hypothetical protein Sfum_1226 [Syntrophobacter fumaroxidans MPOB] gi|259645123|sp|A0LHL6|RIMP_SYNFM RecName: Full=Ribosome maturation factor rimP gi|116697730|gb|ABK16918.1| protein of unknown function DUF150 [Syntrophobacter fumaroxidans MPOB] Length = 168 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 77/149 (51%), Gaps = 10/149 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + + +PVI ++I E +L++FV+++ G +++ DC +S+ + +LDV Sbjct: 21 VWDLTEPVIRAEGMEIIEIEYRRESPGWVLRVFVDQE-GGVSVDDCARISRVVGDLLDVA 79 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +II Y LEVSSPG++RP+ ++ F + G V+ + ++ G ++ G + E G Sbjct: 80 DIIHYPYHLEVSSPGLNRPLRKREQFAKVVGKVIEVKTLVPFGTRRNFKGIL---KEVGV 136 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 +R D + I F ++ ARL Sbjct: 137 -----ERIRMDCDNQLFEIPFSNMDRARL 160 >gi|288871536|ref|ZP_06117961.2| protein associated with NUS operon [Clostridium hathewayi DSM 13479] gi|288863081|gb|EFC95379.1| protein associated with NUS operon [Clostridium hathewayi DSM 13479] Length = 162 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 70/133 (52%), Gaps = 2/133 (1%) Query: 31 PVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGH 89 P++EE F V + ++E N L+ +++++ G +T+ DCE +S+ + LD ++ IE Sbjct: 24 PLMEEYHFELVDVEYVKEAGNWYLRAYIDKE-GGITVDDCEVVSRRLGDWLDEKDFIEDS 82 Query: 90 YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEK 149 Y LEVSSPG+ RP+ + DF R G V ++ ++ G + + + E Sbjct: 83 YILEVSSPGLGRPLKKDKDFDRSIGKDVDIKLYKPMNKQKDYTGTLKAYDKDTVTVTVED 142 Query: 150 RGEKDMNELQIAI 162 E +N +IA+ Sbjct: 143 GTELVLNRPEIAL 155 >gi|310828068|ref|YP_003960425.1| hypothetical protein ELI_2480 [Eubacterium limosum KIST612] gi|308739802|gb|ADO37462.1| Uncharacterized protein conserved in bacteria [Eubacterium limosum KIST612] Length = 154 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 36/107 (33%), Positives = 63/107 (58%), Gaps = 3/107 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +I PV+E + V ++ + K+ +L +++ +G + L DCE +S+ +S ++D + Sbjct: 10 LEELIAPVVEAEGYECVDVTFEKAGKDWVLTTYIDGPNG-IGLDDCEVVSRKLSDLMDEK 68 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLR-WNGHVVACEIVLSSGDKQ 129 + IE Y LEVSSPGIDRP+ ++ DF R + +V +G KQ Sbjct: 69 DPIEQSYLLEVSSPGIDRPLKKEKDFARNMDKRIVVSFYAPVNGSKQ 115 >gi|260589531|ref|ZP_05855444.1| putative cytoplasmic protein [Blautia hansenii DSM 20583] gi|260540099|gb|EEX20668.1| putative cytoplasmic protein [Blautia hansenii DSM 20583] Length = 154 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 57/89 (64%), Gaps = 2/89 (2%) Query: 27 SVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENI 85 ++++P++ E F V + ++E N L+ ++++ +G +T+ DCE +S+ S LD E+ Sbjct: 13 ALLEPIVAEHDFELVDVEYVKEGSNFYLRAYIDKPEG-ITVDDCEVVSRTFSQKLDEEDF 71 Query: 86 IEGHYRLEVSSPGIDRPMVRKSDFLRWNG 114 I+ Y +EVSSPG+ RP+ ++ D+ R G Sbjct: 72 IDEAYIMEVSSPGLGRPLKKEKDYKRSMG 100 >gi|315126156|ref|YP_004068159.1| hypothetical protein PSM_A1065 [Pseudoalteromonas sp. SM9913] gi|315014670|gb|ADT68008.1| hypothetical protein PSM_A1065 [Pseudoalteromonas sp. SM9913] Length = 141 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 63/113 (55%), Gaps = 2/113 (1%) Query: 28 VIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 ++ P +E + F + ++ ++ L++++ +DG +++ +C + S+ IS ILDVE+ I Sbjct: 1 MLTPAVEMLGFELHGLEFVQAGRHSTLRVYIAHEDG-ISVDNCADASRQISAILDVEDPI 59 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 Y LEVSSPG+DRP+ ++ + + G V L ++ G ++ S Sbjct: 60 TNEYDLEVSSPGVDRPLFKQDHYEQAQGEEVRVRTKLPQDGRRNFKGDLIAVS 112 >gi|222099942|ref|YP_002534510.1| hypothetical protein CTN_0968 [Thermotoga neapolitana DSM 4359] gi|254807290|sp|B9K861|RIMP_THENN RecName: Full=Ribosome maturation factor rimP gi|221572332|gb|ACM23144.1| Hypothetical Protein CTN_0968 [Thermotoga neapolitana DSM 4359] Length = 150 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 53/89 (59%), Gaps = 4/89 (4%) Query: 47 EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRK 106 E + +L++ ++ G +++RDCE S+ + LD E++IE Y LEVSSPG+DRP+ Sbjct: 33 ESRGWVLRVVIDNPVGYVSVRDCELFSRELERFLDREDLIEHSYTLEVSSPGLDRPLRGP 92 Query: 107 SDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 D+ R+ G + + + D + IG+I Sbjct: 93 KDYQRFTGKLAK----IITKDGKTFIGRI 117 >gi|239826653|ref|YP_002949277.1| hypothetical protein GWCH70_1151 [Geobacillus sp. WCH70] gi|259585779|sp|C5D9C5|RIMP_GEOSW RecName: Full=Ribosome maturation factor rimP gi|239806946|gb|ACS24011.1| protein of unknown function DUF150 [Geobacillus sp. WCH70] Length = 157 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 79/151 (52%), Gaps = 6/151 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ P++ +M V I ++E KN L++F++ D+G + + C +S+ +S LD Sbjct: 9 VEELVTPILADMDLELVDIEYVKEGKNWFLRVFIDSDNG-VDIEQCGMVSEKLSEKLDEV 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I +Y LEVSSPG +RP+ + DF + G V + +++ G+++G T Sbjct: 68 DPIPHNYFLEVSSPGAERPLKKPKDFTKAIGKNVYIKTYEPIEGEKEFEGELIGFDGTTV 127 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + K I I ++ + SARL V Sbjct: 128 SVTVKDKTRKKT----IDIPYEKVASARLAV 154 >gi|197303043|ref|ZP_03168091.1| hypothetical protein RUMLAC_01770 [Ruminococcus lactaris ATCC 29176] gi|197297898|gb|EDY32450.1| hypothetical protein RUMLAC_01770 [Ruminococcus lactaris ATCC 29176] Length = 155 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 72/137 (52%), Gaps = 2/137 (1%) Query: 27 SVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVENI 85 ++++P++ E+ F V + ++E L+ ++++ G + + DCE +S+ S ILD ++ Sbjct: 13 TLLEPIVTELGFELVDVEYVKEGGTWYLRAYIDKP-GGIAVDDCEAVSRRFSDILDEKDY 71 Query: 86 IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFL 145 I Y EVSSPG+ RP+ ++ DF R G V + +++ +G + ++ + Sbjct: 72 IADSYVFEVSSPGLGRPLKKEKDFKRSLGEEVEIRTYRAIDRQKEFVGLLKAYDDSTVTI 131 Query: 146 EKEKRGEKDMNELQIAI 162 E E+ + IA+ Sbjct: 132 TYEDDTEQTFDRGDIAL 148 >gi|75908092|ref|YP_322388.1| hypothetical protein Ava_1871 [Anabaena variabilis ATCC 29413] gi|91208393|sp|Q3MBZ3|RIMP_ANAVT RecName: Full=Ribosome maturation factor rimP gi|75701817|gb|ABA21493.1| Protein of unknown function DUF150 [Anabaena variabilis ATCC 29413] Length = 153 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 1/131 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L I+ + PV E++ V I ++ +L++ + + L DCE +S+A+ Sbjct: 5 LVPPITDLAIPVAEQLGLEVVGIVFHTNQRPPVLRVDIRNPQQDTGLDDCERMSRALEAA 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD II Y LEVSSPGI R +V +F+ + G V +Q+ IG+++ Sbjct: 65 LDATEIIPDAYVLEVSSPGISRQLVTDREFISFKGFPVIVSTSPPHEGQQEWIGQLIRRD 124 Query: 140 ETGFFLEKEKR 150 ET ++ ++ R Sbjct: 125 ETKVYINQKGR 135 >gi|224373557|ref|YP_002607929.1| hypothetical protein NAMH_1540 [Nautilia profundicola AmH] gi|259585797|sp|B9L6E1|RIMP_NAUPA RecName: Full=Ribosome maturation factor rimP gi|223588517|gb|ACM92253.1| conserved hypothetical protein [Nautilia profundicola AmH] Length = 148 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 79/144 (54%), Gaps = 6/144 (4%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 +++ +I+ ++E+ I L EE + ++++ + G ++L DC +++ ISPI D+ Sbjct: 5 ELNDIIKNIVEDNGCDLYDIELSEEGGHKYFRVYITKP-GGVSLNDCAKINNLISPIFDI 63 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ +EG Y LEVSSPG++R + + F + G V +++ D KL G++ + Sbjct: 64 EDPVEGKYFLEVSSPGLERKLTKPEHFEKSIGEKVK----VTTNDGTKLKGELKSFIDNV 119 Query: 143 FFLEKEKRGEKDMNELQIAISFDS 166 + KEK D+ + + I +++ Sbjct: 120 AEIGKEKVNFDDIKKAKTYIEWNT 143 >gi|320008231|gb|ADW03081.1| protein of unknown function DUF150 [Streptomyces flavogriseus ATCC 33331] Length = 165 Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 81/151 (53%), Gaps = 11/151 (7%) Query: 25 ISSVIQPVI--EEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 + +++P++ +E+ +++S + +L ++ V+ +DG + L C ELS++IS LD Sbjct: 9 LRGLLEPLVSAKELDLEEIEVSRAGRRRVL-RVIVDSEDG-VELDTCAELSRSISEKLDE 66 Query: 83 ENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + + E Y LEVSSPG DRP+ ++R G + L+ G+ +L+ +I+G + Sbjct: 67 TDAMGEDEYVLEVSSPGADRPLTEHRHYVRATGRLAR----LTLGEGGELVARILGVDDE 122 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G LE G K ++FD + AR+ Sbjct: 123 GLDLEVP--GVKGRKPTSRRVAFDEISRARV 151 >gi|167856226|ref|ZP_02478961.1| hypothetical protein HPS_08460 [Haemophilus parasuis 29755] gi|259585812|sp|B8F3J3|RIMP_HAEPS RecName: Full=Ribosome maturation factor rimP gi|167852646|gb|EDS23925.1| hypothetical protein HPS_08460 [Haemophilus parasuis 29755] Length = 153 Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 62/105 (59%), Gaps = 2/105 (1%) Query: 33 IEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYR 91 I+ M F V + L ++++++++ G +T+ DC ++S+ +S I DVE+ I Y Sbjct: 16 IDAMGFELVGVECQRAGRFLTVRLYIDKE-GGVTVDDCSDVSRQVSAIFDVEDPIADKYN 74 Query: 92 LEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 LEVSSPG+DRP+ + + R+ G + + + D++K G+++ Sbjct: 75 LEVSSPGLDRPLFTLAHYQRFVGREIVVHLRIPMLDRRKWQGELV 119 >gi|167758064|ref|ZP_02430191.1| hypothetical protein CLOSCI_00402 [Clostridium scindens ATCC 35704] gi|167663961|gb|EDS08091.1| hypothetical protein CLOSCI_00402 [Clostridium scindens ATCC 35704] Length = 155 Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 57/92 (61%), Gaps = 2/92 (2%) Query: 27 SVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVENI 85 +++ P++EE F V + ++E L+ ++++ G + + DCE +S+ +S ILD ++ Sbjct: 13 AILMPIVEEHGFELVDVEYVKEGGTWYLRAYIDKP-GGINVDDCEVVSRRLSDILDEKDY 71 Query: 86 IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 IE Y LEVSSPG+ RP+ ++ DF R G V Sbjct: 72 IEEAYILEVSSPGLGRPLKKEKDFKRSLGEEV 103 >gi|295102729|emb|CBL00274.1| Uncharacterized protein conserved in bacteria [Faecalibacterium prausnitzii L2-6] Length = 161 Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 2/113 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++++PV+E M R + +E + L++ ++RD G M C E+S A+ PILD Sbjct: 13 VEALVRPVVEGMGLRLWDVVFEKEGPDWYLRVLIDRD-GTMDTDTCAEVSHALDPILDEA 71 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 + I+ Y LEV SPG+ R + R + G + +++ + D + I+ Sbjct: 72 DPIDQSYYLEVGSPGLGRKLTRPEHYEALKGEKIGVKLIRPTADGVREFAGIL 124 >gi|289550943|ref|YP_003471847.1| hypothetical protein SLGD_01629 [Staphylococcus lugdunensis HKU09-01] gi|289180475|gb|ADC87720.1| hypothetical protein SLGD_01629 [Staphylococcus lugdunensis HKU09-01] Length = 155 Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 35/152 (23%), Positives = 86/152 (56%), Gaps = 6/152 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + ++ ++IQPV+E +++ V++ ++E K+ L++ ++++ G + L DC S+ IS + Sbjct: 4 ITEEVETLIQPVLEALNYELVEVEFVKEGKDHFLRVSIDKE-GGVDLNDCTLASEKISEV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +D + I+ Y L+V+SPG +RP+ ++ D+ + + + + ++ +G ++ + Sbjct: 63 MDEHDPIKEMYYLDVASPGAERPIKKEQDYQKAIQQPIFVSLYAPIENNKEWLGILVEVT 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 +E +++ +K QI+I + + AR Sbjct: 123 AETITMEVKEKAKKK----QISIPRNKIAKAR 150 >gi|320530107|ref|ZP_08031177.1| hypothetical protein HMPREF9555_01262 [Selenomonas artemidis F0399] gi|320137540|gb|EFW29452.1| hypothetical protein HMPREF9555_01262 [Selenomonas artemidis F0399] Length = 149 Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 31 PVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHY 90 PV E+ V + + E++ L+++++++ G + + DC LS+ + +LD E+ I Y Sbjct: 18 PVQPELEL--VDVEYVRERDWYLRVYIDKE-GGIDIEDCRMLSEHLEEVLDREDFISDAY 74 Query: 91 RLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKR 150 LEVSSPG+DR + + DF R +G V + K+ L G + G L+ + R Sbjct: 75 ILEVSSPGLDRVLRKARDFEREHGKRVDVALYAPLDGKKNLTGALTGYDGNVLILDDDVR 134 >gi|269961978|ref|ZP_06176333.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269833301|gb|EEZ87405.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 151 Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 69/117 (58%), Gaps = 2/117 (1%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 GL ++ +++ +E + V + + + L+I+++ ++G + + C E+S +S Sbjct: 3 GLERQLTEMLEAPVEASGYELVGLEFIRAGAHSTLRIYIDHENG-INVDACAEVSHQVSA 61 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +LDVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ +++K G I Sbjct: 62 VLDVEDPISVAYSLEVSSPGLERPLFKAAHYEQFIGHEVSIVLKMAVANRRKWAGII 118 >gi|225570593|ref|ZP_03779618.1| hypothetical protein CLOHYLEM_06695 [Clostridium hylemonae DSM 15053] gi|225160606|gb|EEG73225.1| hypothetical protein CLOHYLEM_06695 [Clostridium hylemonae DSM 15053] Length = 155 Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 61/104 (58%), Gaps = 3/104 (2%) Query: 28 VIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 ++ P++EE F V + ++E L+ ++++ G + + DCE++S+ +S ILD ++ I Sbjct: 14 ILLPIVEEYGFELVDVEYVKEGSTWYLRAYIDKP-GGINIDDCEKVSRRLSDILDEKDYI 72 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 + Y +EVSSPG+ RP+ ++ DF R G V DKQK Sbjct: 73 DDAYIMEVSSPGLGRPLKKEKDFKRSLGEEVEIR-TYRMMDKQK 115 >gi|166712600|ref|ZP_02243807.1| hypothetical protein Xoryp_14385 [Xanthomonas oryzae pv. oryzicola BLS256] Length = 196 Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 82/159 (51%), Gaps = 14/159 (8%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFV-----ERDDGNMTLRDCEELSQA 75 A +I++++ P ++ + + + L L++++ E+ + + + DCE +S+ Sbjct: 5 ATEIANLLSPTVDSLGLELLGVEYLPAPGGATLRLYIDVPLAEQPERVINVDDCERVSRE 64 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LDVE+ I G+Y LEVSSPG+DRP+ F R G + L+ +++ G+I Sbjct: 65 VSAQLDVEDPISGNYTLEVSSPGVDRPLFTLEQFARHAGESAKIVLKLAQDGRRRFQGEI 124 Query: 136 MG-TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + +E G + ++ + I FD++ AR++ Sbjct: 125 LRIDAEAGAVVFA-------VDGKDVQIGFDNIDKARIL 156 >gi|149909282|ref|ZP_01897938.1| hypothetical protein PE36_05678 [Moritella sp. PE36] gi|149807599|gb|EDM67547.1| hypothetical protein PE36_05678 [Moritella sp. PE36] Length = 152 Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 66/112 (58%), Gaps = 2/112 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +++P +E + F V I K+ L ++++ ++G + + DC ++S +S I+DVE Sbjct: 8 LTDLLEPTVEMLGFELVGIEFTRAGKHSTLLVYIDHENG-IFVDDCSKVSHQLSAIMDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 + I Y LEVSSPG++RP+ + + + + G + + ++ ++KL G I Sbjct: 67 DPISTEYFLEVSSPGMERPLFKVAHYQEYCGSEIKALLRMAVNGRRKLRGVI 118 >gi|307720624|ref|YP_003891764.1| hypothetical protein Saut_0703 [Sulfurimonas autotrophica DSM 16294] gi|306978717|gb|ADN08752.1| protein of unknown function DUF150 [Sulfurimonas autotrophica DSM 16294] Length = 150 Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 39/102 (38%), Positives = 58/102 (56%), Gaps = 5/102 (4%) Query: 64 MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVL 123 ++L +C EL+ ISP+LDV I G YRLEV SPGI+R + F + G V+ L Sbjct: 49 VSLDECVELTHLISPLLDVTPPISGEYRLEVGSPGIERKLTTLDHFKKSVGENVS----L 104 Query: 124 SSGDKQKLIGKIMGTSETGFFLEKEKR-GEKDMNELQIAISF 164 +K+KL GK++ F+EKE + E D N ++ A ++ Sbjct: 105 LLDEKEKLKGKLVKVEGNKLFVEKEGQIHEVDFNAVKKAKTY 146 >gi|284030870|ref|YP_003380801.1| hypothetical protein Kfla_2937 [Kribbella flavida DSM 17836] gi|283810163|gb|ADB32002.1| protein of unknown function DUF150 [Kribbella flavida DSM 17836] Length = 178 Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 70/115 (60%), Gaps = 9/115 (7%) Query: 29 IQPVIEEM--SFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 ++P++E+ + +++ + LL ++ V+RD G ++L D ++++AIS LD ++++ Sbjct: 17 LRPLVEQFGCDLEAAEVTPAGRRRLL-RVLVDRD-GGISLDDVADVTRAISKALDADDVM 74 Query: 87 -EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 +G Y LEVSSPG+DRP+ + R +VA + L SGD KL G+I S+ Sbjct: 75 GDGAYTLEVSSPGVDRPLTLPRHWRRNISRLVA--VTLHSGD--KLTGRIKTVSD 125 >gi|170727896|ref|YP_001761922.1| hypothetical protein Swoo_3563 [Shewanella woodyi ATCC 51908] gi|226703865|sp|B1KRR2|RIMP_SHEWM RecName: Full=Ribosome maturation factor rimP gi|169813243|gb|ACA87827.1| protein of unknown function DUF150 [Shewanella woodyi ATCC 51908] Length = 151 Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 9/125 (7%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSD 108 K+ +++++++ + G + + DC E+S+ +S +LDVE+ I Y LEVSSPG+DRP+ Sbjct: 33 KHSVVRVYIDNEKG-VFIEDCAEVSRQVSAVLDVEDPISTEYTLEVSSPGVDRPLFNAEQ 91 Query: 109 FLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLL 168 + + V ++ + + L G + G L D NEL IA+ D++ Sbjct: 92 YTAYIDETVKIQLTMPVAGSRNLKGTVTGVEGQMLTL------TVDGNELIIAL--DNIR 143 Query: 169 SARLI 173 LI Sbjct: 144 KGNLI 148 >gi|15604409|ref|NP_220926.1| hypothetical protein RP554 [Rickettsia prowazekii str. Madrid E] gi|6647940|sp|Q9ZCZ6|RIMP_RICPR RecName: Full=Ribosome maturation factor rimP gi|3861103|emb|CAA15003.1| unknown [Rickettsia prowazekii] Length = 117 Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 63/102 (61%), Gaps = 1/102 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-MTLRDCEELSQAISPI 79 +A I+++I+ + +M F V + ++++ ++ +GN +++ DC +S+ IS I Sbjct: 4 IAQQITNIIEESLTDMGFELVLVKFKGVSPKVVEVLIDSLNGNKISIEDCTNVSRTISAI 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 LDVE++IE Y LEVSS GI+R +V+ ++ R+ G V ++ Sbjct: 64 LDVEDLIEEAYSLEVSSSGIERTLVKFENYNRFLGREVKIKL 105 >gi|23099049|ref|NP_692515.1| hypothetical protein OB1594 [Oceanobacillus iheyensis HTE831] gi|34223115|sp|Q8EQU5|RIMP_OCEIH RecName: Full=Ribosome maturation factor rimP gi|22777277|dbj|BAC13550.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 156 Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 81/152 (53%), Gaps = 12/152 (7%) Query: 28 VIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 ++ P++EE + V I ++E KN L+++++++ G + + +C E+S+ +S LD + I Sbjct: 12 LVTPILEEKNLELVDIEYVKEGKNWFLRVYIDKE-GGIDIMECGEVSELLSEKLDESDPI 70 Query: 87 EGHYRLEVSSPGIDRPMVRKSDF---LRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 Y LEVSSPG++RP+ +K DF + N V E + S + + + G + T Sbjct: 71 TEAYFLEVSSPGVERPLKKKEDFDASIGKNIFVKLYEPIDGSKEYEGTLQSFDGETVTME 130 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + K ++ Q+ I + + AR+ VT Sbjct: 131 YKVKTRKK-------QVEIPYSKIAKARIAVT 155 >gi|238927233|ref|ZP_04658993.1| protein of hypothetical function DUF150 [Selenomonas flueggei ATCC 43531] gi|238884908|gb|EEQ48546.1| protein of hypothetical function DUF150 [Selenomonas flueggei ATCC 43531] Length = 163 Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 67/122 (54%), Gaps = 10/122 (8%) Query: 25 ISSVIQPVIEEM---------SFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 +S+ I+ +EEM + V + ++E++ L++++++ G + + DC+ LS+ Sbjct: 15 MSAKIEERVEEMVRGLLTDLPAIELVDVEYVKERDSYLRVYIDKT-GGIDIDDCQSLSER 73 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 + +LD E+ I Y LEVSSPG+DR + ++ DF R +G V + K++ G + Sbjct: 74 LEEMLDREDFIPDAYILEVSSPGLDRVLRKERDFTREHGRTVDVTLYAPFEGKKQWTGTL 133 Query: 136 MG 137 G Sbjct: 134 AG 135 >gi|145589411|ref|YP_001156008.1| hypothetical protein Pnuc_1229 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|226696286|sp|A4SY80|RIMP_POLSQ RecName: Full=Ribosome maturation factor rimP gi|145047817|gb|ABP34444.1| protein of unknown function DUF150 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 163 Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 37/112 (33%), Positives = 66/112 (58%), Gaps = 6/112 (5%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN--MTLRDCEELSQAISPILDVENI 85 +I +E + + V+I E LL++ +E D +++ DCE++S +S L VENI Sbjct: 6 IIAAELENLGYTLVEIE--REAGGLLRVTIENPDYERLISVLDCEKVSHQLSYALPVENI 63 Query: 86 IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 + RLE+SSPG+DRP+ +DF R+ G V ++ +++G+++ G + G Sbjct: 64 --PYERLEISSPGLDRPVKSAADFERFTGMEVDLKLRVAAGNRKNFRGVLQG 113 >gi|218247499|ref|YP_002372870.1| hypothetical protein PCC8801_2713 [Cyanothece sp. PCC 8801] gi|257061165|ref|YP_003139053.1| hypothetical protein Cyan8802_3390 [Cyanothece sp. PCC 8802] gi|226701501|sp|B7K5I1|RIMP_CYAP8 RecName: Full=Ribosome maturation factor rimP gi|218167977|gb|ACK66714.1| protein of unknown function DUF150 [Cyanothece sp. PCC 8801] gi|256591331|gb|ACV02218.1| protein of unknown function DUF150 [Cyanothece sp. PCC 8802] Length = 153 Score = 61.2 bits (147), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 1/146 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 L I ++ P+ E+ V + K +L++ + G +L DCE +S+A+ + Sbjct: 5 LIPQIINLATPIAEDRGLEVVDVVFQTNKRPPVLRVDIRNSQGETSLDDCEAVSRALEAV 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD ++ G Y LE+SSPGI R + +F+ + G V + D ++ G++ G Sbjct: 65 LDESQVMGGSYVLEISSPGISRQLHSDREFISFKGFAVIVTTEIPYLDHKEWRGQLQGRD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFD 165 E+ ++ ++ R EL + D Sbjct: 125 ESAVYINQKGRAIAIPRELIAKVQLD 150 >gi|256750787|ref|ZP_05491672.1| protein of unknown function DUF150 [Thermoanaerobacter ethanolicus CCSD1] gi|256750370|gb|EEU63389.1| protein of unknown function DUF150 [Thermoanaerobacter ethanolicus CCSD1] Length = 151 Score = 61.2 bits (147), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 76/138 (55%), Gaps = 3/138 (2%) Query: 26 SSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ P++E+ +F V + +E + L+++++++ G +TL DC+ +S+ +S LD + Sbjct: 9 KDLVMPILEKNNFELVDVEYKKEGSHWYLRVYIDKE-GGITLDDCQLVSEYLSDRLDEVD 67 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG-TSETGF 143 IE Y LEVSSPG+DRP+ + DF R G + + ++K G+++ T + Sbjct: 68 PIEHSYILEVSSPGLDRPLKKPRDFERNIGKEIEISLYSPIDKRKKFEGELIEFTGDKII 127 Query: 144 FLEKEKRGEKDMNELQIA 161 L +R E DM + + Sbjct: 128 ILYNGERKEFDMKNVSLV 145 >gi|170759112|ref|YP_001787733.1| hypothetical protein CLK_1798 [Clostridium botulinum A3 str. Loch Maree] gi|226695970|sp|B1KWL1|RIMP_CLOBM RecName: Full=Ribosome maturation factor rimP gi|169406101|gb|ACA54512.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch Maree] Length = 153 Score = 61.2 bits (147), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 70/123 (56%), Gaps = 2/123 (1%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 L ++ I+P++E +++ I ++E K L+I+++ ++G +L CE++S+A+S Sbjct: 5 NLIENLKKQIEPIVEGLNYELYHIEFVKEGKENYLRIYIDSENG-ASLEGCEKVSRAVSE 63 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LD + I+ Y LEVSSPGIDR + ++ G+ + + K+K G+++ Sbjct: 64 LLDDIDPIQESYYLEVSSPGIDRVLYTDKHLEKYKGYNIILNLYSPIDKKKKYEGELIDF 123 Query: 139 SET 141 +E Sbjct: 124 NEN 126 >gi|329896245|ref|ZP_08271423.1| clustered with transcription termination protein NusA [gamma proteobacterium IMCC3088] gi|328921916|gb|EGG29283.1| clustered with transcription termination protein NusA [gamma proteobacterium IMCC3088] Length = 155 Score = 61.2 bits (147), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 81/151 (53%), Gaps = 10/151 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 +++ +++ +E M F + + KN LL+++++R+ G + + DC ++S+ IS ILD Sbjct: 10 AELADLLRATVEAMGFALWGLEFRAQGKNSLLRVYIDREAG-VQVDDCAQVSRQISGILD 68 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I G Y LEVSSPGIDR + ++ G + ++ + ++ G ++G + Sbjct: 69 VEDPIAGEYNLEVSSPGIDRLLFSLEQCQQYVGEWLEVKLRVPFEGRKNFNGTLVGIEDQ 128 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + +++ + + FDS+ A++ Sbjct: 129 DVVVR--------IDDDEYVLPFDSIDKAKV 151 >gi|156975665|ref|YP_001446572.1| hypothetical protein VIBHAR_03398 [Vibrio harveyi ATCC BAA-1116] gi|166990836|sp|A7MUV0|RIMP_VIBHB RecName: Full=Ribosome maturation factor rimP gi|156527259|gb|ABU72345.1| hypothetical protein VIBHAR_03398 [Vibrio harveyi ATCC BAA-1116] Length = 151 Score = 61.2 bits (147), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 69/117 (58%), Gaps = 2/117 (1%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 GL ++ +++ +E + V + + + L+I+++ ++G + + C E+S +S Sbjct: 3 GLERQLTEMLEAPVEATGYELVGLEFIRAGAHSTLRIYIDHENG-INVDACAEVSHQVSA 61 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +LDVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ +++K G I Sbjct: 62 VLDVEDPISVAYSLEVSSPGLERPLFKAAHYEQFIGHEVSIVLKMAVANRRKWKGII 118 >gi|254519188|ref|ZP_05131244.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA] gi|226912937|gb|EEH98138.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA] Length = 152 Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 68/125 (54%), Gaps = 2/125 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I +++P+ EE+++ I ++E L+I++++D G + L DCE LS+ +S ++D + Sbjct: 10 IDQLVRPIAEELNYEIYHIEYVKENGEYYLRIYIDKD-GGIALSDCEALSRRVSDVMDEK 68 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I+ Y LEVSSPG++R + F + G + S ++ + G + S+ Sbjct: 69 DPIKEAYFLEVSSPGLNRTLFTDDHFKKQIGKEIMVRFTKSLNGRKNIKGILKEVSDDSV 128 Query: 144 FLEKE 148 +E + Sbjct: 129 IVETD 133 >gi|291546818|emb|CBL19926.1| Uncharacterized protein conserved in bacteria [Ruminococcus sp. SR1/5] Length = 120 Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 56/86 (65%), Gaps = 3/86 (3%) Query: 27 SVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVENI 85 +++ P++E F V + ++E L+ ++++ G +T+ DCE++S+A S ILD ++ Sbjct: 13 AILTPIVESRGFELVDVEYVKEAGTWYLRGYIDKP-GGITVNDCEDVSRAFSDILDEQDF 71 Query: 86 IEGHYRLEVSSPGIDRPMVRKSDFLR 111 IE Y +E+SSPG+DRP+ +K LR Sbjct: 72 IEDSYIMEISSPGLDRPL-KKEKTLR 96 >gi|114562166|ref|YP_749679.1| hypothetical protein Sfri_0988 [Shewanella frigidimarina NCIMB 400] gi|114333459|gb|ABI70841.1| protein of unknown function DUF150 [Shewanella frigidimarina NCIMB 400] Length = 165 Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 59/104 (56%), Gaps = 2/104 (1%) Query: 33 IEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYR 91 +E + F+ I ++ ++ +L++F++ ++G + + DC E S+ +S ++DVE+ I Y Sbjct: 30 VEALGFKLWGIEYIQAGRHSILRVFIDHENG-INIEDCAEASRQVSAVMDVEDPISTEYT 88 Query: 92 LEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LEVSSPG+DRP+ + + G ++ + + L G I Sbjct: 89 LEVSSPGVDRPLFTAEQYRAYIGEETKVQLTMPVAGSRNLKGVI 132 >gi|126175441|ref|YP_001051590.1| hypothetical protein Sbal_3241 [Shewanella baltica OS155] gi|153001791|ref|YP_001367472.1| hypothetical protein Shew185_3282 [Shewanella baltica OS185] gi|160876525|ref|YP_001555841.1| hypothetical protein Sbal195_3419 [Shewanella baltica OS195] gi|217972313|ref|YP_002357064.1| hypothetical protein Sbal223_1126 [Shewanella baltica OS223] gi|304410267|ref|ZP_07391886.1| protein of unknown function DUF150 [Shewanella baltica OS183] gi|307302022|ref|ZP_07581780.1| protein of unknown function DUF150 [Shewanella baltica BA175] gi|166990740|sp|A3D7K8|RIMP_SHEB5 RecName: Full=Ribosome maturation factor rimP gi|166990756|sp|A6WRH0|RIMP_SHEB8 RecName: Full=Ribosome maturation factor rimP gi|189040141|sp|A9KZX3|RIMP_SHEB9 RecName: Full=Ribosome maturation factor rimP gi|254799945|sp|B8E6N0|RIMP_SHEB2 RecName: Full=Ribosome maturation factor rimP gi|125998646|gb|ABN62721.1| protein of unknown function DUF150 [Shewanella baltica OS155] gi|151366409|gb|ABS09409.1| protein of unknown function DUF150 [Shewanella baltica OS185] gi|160862047|gb|ABX50581.1| protein of unknown function DUF150 [Shewanella baltica OS195] gi|217497448|gb|ACK45641.1| protein of unknown function DUF150 [Shewanella baltica OS223] gi|304351676|gb|EFM16075.1| protein of unknown function DUF150 [Shewanella baltica OS183] gi|306914060|gb|EFN44481.1| protein of unknown function DUF150 [Shewanella baltica BA175] gi|315268719|gb|ADT95572.1| protein of unknown function DUF150 [Shewanella baltica OS678] Length = 151 Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 79/150 (52%), Gaps = 10/150 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +++ +E + F+ I ++ K+ L++F++ ++G + + DC S+ +S +LDVE Sbjct: 8 LAEMLKVPVEALGFQLWGIEYVQAGKHSTLRVFIDGENG-INIEDCANASRQVSAVLDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I Y LEVSSPG+DRP+ + + G V ++ + + L G I T+ G Sbjct: 67 DPISTEYTLEVSSPGVDRPLFTAEQYAGYVGEDVKLQLTMPVDGSRNLKGAI--TAVDGQ 124 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + G+ ++ ++ D++ LI Sbjct: 125 MLSLKVNGK------ELVVALDNIRKGNLI 148 >gi|239982634|ref|ZP_04705158.1| hypothetical protein SalbJ_24601 [Streptomyces albus J1074] gi|291454475|ref|ZP_06593865.1| UPF0090 protein [Streptomyces albus J1074] gi|291357424|gb|EFE84326.1| UPF0090 protein [Streptomyces albus J1074] Length = 174 Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 83/158 (52%), Gaps = 16/158 (10%) Query: 21 LAGDISSVIQPVI--EEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 L+ + +I+P++ +E+ V ++ K +L++ V+ DDG + L C +LS+ +S Sbjct: 5 LSDRLRELIEPLVSSQELDLEEVTVTPAG-KRRVLRVVVDSDDG-VQLDTCADLSRTVSA 62 Query: 79 ILDVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD +++ E Y LEV+SPG DRP+ F+R G +V + +G ++L+ +I Sbjct: 63 RLDETDLMGESEYVLEVTSPGADRPLSEYRHFVRATGRLVKFHLTPDAG-AEELVARIEA 121 Query: 138 TSETGFFLE---------KEKRGE-KDMNELQIAISFD 165 E G LE K++R KD+ ++ I F+ Sbjct: 122 VDEEGLDLEVPGVKGRKPKQRRLPLKDVARARVEIEFN 159 >gi|238020477|ref|ZP_04600903.1| hypothetical protein GCWU000324_00359 [Kingella oralis ATCC 51147] gi|237867457|gb|EEP68463.1| hypothetical protein GCWU000324_00359 [Kingella oralis ATCC 51147] Length = 145 Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 63/112 (56%), Gaps = 5/112 (4%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI S++ + + + V L + L ++F+++ G +T+ DC +S +S + VE Sbjct: 2 DIQSILDTTLPGLGYELVDHELTAQGTL--RVFIDKA-GGITVDDCAAVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 NI + LE+SSPG+DRP+ + +DF+R+ G + + L ++ IG++ Sbjct: 59 NI--DYKNLEISSPGLDRPLKKAADFIRFAGSQIKLKTRLPVDGQKNFIGRL 108 >gi|259586208|sp|Q086H4|RIMP_SHEFN RecName: Full=Ribosome maturation factor rimP Length = 151 Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 59/104 (56%), Gaps = 2/104 (1%) Query: 33 IEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYR 91 +E + F+ I ++ ++ +L++F++ ++G + + DC E S+ +S ++DVE+ I Y Sbjct: 16 VEALGFKLWGIEYIQAGRHSILRVFIDHENG-INIEDCAEASRQVSAVMDVEDPISTEYT 74 Query: 92 LEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LEVSSPG+DRP+ + + G ++ + + L G I Sbjct: 75 LEVSSPGVDRPLFTAEQYRAYIGEETKVQLTMPVAGSRNLKGVI 118 >gi|56460078|ref|YP_155359.1| alpha-hemolysin-like HlyA family protein [Idiomarina loihiensis L2TR] gi|81362146|sp|Q5QTY6|RIMP_IDILO RecName: Full=Ribosome maturation factor rimP gi|56179088|gb|AAV81810.1| Alpha-hemolysin-like protein, hlyA family [Idiomarina loihiensis L2TR] Length = 152 Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 64/115 (55%), Gaps = 2/115 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I+P +E + F + + K L+++++ +G +++ +C ++S +S +LDVE Sbjct: 8 LTDIIRPAVEALEFELWGVEFIRAGKFSTLRVYIDHPEG-ISVDNCADVSYQVSSLLDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 + I Y LEVSSPG++RP + VA E+V + +K+K +++ Sbjct: 67 DPINVEYNLEVSSPGMERPFFNAQQMQPYINETVAFELVAAQKNKRKFKAELIAV 121 >gi|229544432|ref|ZP_04433490.1| protein of unknown function DUF150 [Bacillus coagulans 36D1] gi|229324917|gb|EEN90594.1| protein of unknown function DUF150 [Bacillus coagulans 36D1] Length = 155 Score = 60.8 bits (146), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 79/151 (52%), Gaps = 6/151 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + + PV+E + V I ++E KN L++++++++G + + +C +S+ + LD Sbjct: 8 VEQLASPVVEGLGLELVDIEYVKEGKNWFLRVYIDKENG-VDIEECGLVSERLGEKLDEV 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I +Y LEVSSPG +RP+ + DF R G V + ++ GK++ Sbjct: 67 DPIPHNYFLEVSSPGAERPLKKARDFERAVGRTVLVKTYEPLDGEKTFQGKLIAFHNGCL 126 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 LE + + +K ++ I +D + +ARL V Sbjct: 127 TLECKVKTKK----IEKEIPYDKVANARLAV 153 >gi|308050586|ref|YP_003914152.1| hypothetical protein Fbal_2876 [Ferrimonas balearica DSM 9799] gi|307632776|gb|ADN77078.1| protein of unknown function DUF150 [Ferrimonas balearica DSM 9799] Length = 151 Score = 60.8 bits (146), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 1/85 (1%) Query: 53 LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRW 112 L++F+E ++G +T+ DC +S+ + +LDVE+ I Y LEVSSPG+DRP+ + R+ Sbjct: 37 LRLFIEHENG-ITVDDCAAVSRQVGAVLDVEDPITTEYNLEVSSPGLDRPLFTAEHYQRY 95 Query: 113 NGHVVACEIVLSSGDKQKLIGKIMG 137 G + + K+K G+I+ Sbjct: 96 MGSEAVVVLNMPMEGKRKWQGEIVA 120 >gi|157363141|ref|YP_001469908.1| hypothetical protein Tlet_0274 [Thermotoga lettingae TMO] gi|166988603|sp|A8F3W0|RIMP_THELT RecName: Full=Ribosome maturation factor rimP gi|157313745|gb|ABV32844.1| protein of unknown function DUF150 [Thermotoga lettingae TMO] Length = 152 Score = 60.8 bits (146), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 42/126 (33%), Positives = 68/126 (53%), Gaps = 11/126 (8%) Query: 47 EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRK 106 E + L+L++ ++ + +++R CE +S I LD ++I+ Y LEVSSPG+DRP+ Sbjct: 34 ERRKLVLRVVIDDPENYVSIRQCEIVSSQIGNYLDEADLIDSSYILEVSSPGLDRPLREM 93 Query: 107 SDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDS 166 D+ R+ G + +I L G + L+G I T+E +E K GE I SFD Sbjct: 94 KDYNRFVGRL--AKIWLKDG--KVLVGNIKETTENTVSIEL-KNGE------IITFSFDQ 142 Query: 167 LLSARL 172 + +L Sbjct: 143 IKKGKL 148 >gi|315502522|ref|YP_004081409.1| hypothetical protein ML5_1726 [Micromonospora sp. L5] gi|315409141|gb|ADU07258.1| protein of unknown function DUF150 [Micromonospora sp. L5] Length = 216 Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 67/127 (52%), Gaps = 8/127 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE--- 83 VI+PV+ + +S+ + ++++ V+ DG + L ++S+A+S LD Sbjct: 46 VIEPVVTAAGYDLEDLSVSRAGRRHVVRVIVD-ADGGINLDGVADVSRAVSAALDAAEEA 104 Query: 84 --NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 +I+ G Y+LEVSSPG+DRP+ + R G +V + +GD+Q L G+I + Sbjct: 105 GGDIVAGEYQLEVSSPGVDRPLTLPRHWRRNAGRLVKVTVRGDAGDRQ-LTGRITAADDE 163 Query: 142 GFFLEKE 148 LE + Sbjct: 164 RVVLETD 170 >gi|238897564|ref|YP_002923243.1| hypothetical protein HDEF_0333 [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259585781|sp|C4K3F2|RIMP_HAMD5 RecName: Full=Ribosome maturation factor rimP gi|229465321|gb|ACQ67095.1| conserved hypothetical protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 155 Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 67/115 (58%), Gaps = 1/115 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L + +I +E + + V I ++ + +L+I+++ ++G +T+ C ++S+ +S +L Sbjct: 9 LVKKLKKIITAPVEGLGYELVGIEFIQSRQSVLRIYIDHEEG-VTVDSCADVSKEVSLVL 67 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 DVE+ I Y LE+SSPG+DRP+ + ++ G V + ++ +++K G I Sbjct: 68 DVEDPITVPYNLEISSPGLDRPLFTARHYAQFIGEKVNLMLRMAIQNQRKWQGII 122 >gi|219870468|ref|YP_002474843.1| hypothetical protein HAPS_0200 [Haemophilus parasuis SH0165] gi|219690672|gb|ACL31895.1| conserved hypothetical protein [Haemophilus parasuis SH0165] Length = 135 Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 56/86 (65%), Gaps = 1/86 (1%) Query: 51 LLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFL 110 L ++++++++ G +T+ DC ++S+ +S I DVE+ I Y LEVSSPG+DRP+ + + Sbjct: 17 LTVRLYIDKE-GGVTVDDCSDVSRQVSAIFDVEDPIADKYNLEVSSPGLDRPLFTLAHYQ 75 Query: 111 RWNGHVVACEIVLSSGDKQKLIGKIM 136 R+ G + + + D++K G+++ Sbjct: 76 RFVGREIVVHLRIPMLDRRKWQGELV 101 >gi|224825863|ref|ZP_03698967.1| protein of unknown function DUF150 [Lutiella nitroferrum 2002] gi|224602087|gb|EEG08266.1| protein of unknown function DUF150 [Lutiella nitroferrum 2002] Length = 141 Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 66/120 (55%), Gaps = 11/120 (9%) Query: 53 LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRW 112 ++F+++ G +T+ DC +S ++ + VENI + RLEVSSPG+DRP+ ++SDF+R+ Sbjct: 29 FRVFLDKP-GGITVEDCVLVSNHLTRLFMVENI--DYERLEVSSPGLDRPLKKESDFVRF 85 Query: 113 NGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +G + + ++K G++ G + LE E R +AI + ARL Sbjct: 86 SGQRAKIKTRMPIEQQKKFSGRLAGVVDGAVQLEFEGR--------TVAIPLAVIDKARL 137 >gi|157164808|ref|YP_001466379.1| hypothetical protein CCC13826_1497 [Campylobacter concisus 13826] gi|259585734|sp|A7ZC71|RIMP_CAMC1 RecName: Full=Ribosome maturation factor rimP gi|112801640|gb|EAT98984.1| protein Tmden_0678 [Campylobacter concisus 13826] Length = 138 Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 57/98 (58%), Gaps = 6/98 (6%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 + ++++ +D G ++L DCE++S+ +SPI DV + G Y LEVSSPG++R + + S F Sbjct: 28 IFRVYITKD-GGVSLDDCEKVSRLLSPIFDVTPPVSGDYNLEVSSPGLERKLSKPSHFKA 86 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEK 149 G +V + + +K G+++ E +E E+ Sbjct: 87 SVGELVKVQT-----EAEKFAGRLVKADEESIAVENEE 119 >gi|302865965|ref|YP_003834602.1| hypothetical protein Micau_1466 [Micromonospora aurantiaca ATCC 27029] gi|302568824|gb|ADL45026.1| protein of unknown function DUF150 [Micromonospora aurantiaca ATCC 27029] Length = 216 Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 67/127 (52%), Gaps = 8/127 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE--- 83 VI+PV+ + +S+ + ++++ V+ DG + L ++S+A+S LD Sbjct: 46 VIEPVVTAAGYDLEDLSVSRAGRRHVVRVIVD-ADGGINLDGVADVSRAVSAALDAAEEA 104 Query: 84 --NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 +I+ G Y+LEVSSPG+DRP+ + R G +V + +GD+Q L G+I + Sbjct: 105 GGDIVAGEYQLEVSSPGVDRPLTLPRHWRRNAGRLVKVTVRGDAGDRQ-LTGRITAADDE 163 Query: 142 GFFLEKE 148 LE + Sbjct: 164 RVVLETD 170 >gi|257460847|ref|ZP_05625948.1| conserved hypothetical protein [Campylobacter gracilis RM3268] gi|257442178|gb|EEV17320.1| conserved hypothetical protein [Campylobacter gracilis RM3268] Length = 139 Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 12/113 (10%) Query: 62 GNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 G + L DCE LS+ +SPI DVE +EG + LEV SPG++R + + F G +V Sbjct: 37 GGVGLDDCERLSRLLSPIYDVEPPLEGEWTLEVGSPGLERKLSKPQHFANSVGELVR--- 93 Query: 122 VLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 LS D QKL G+++ E G + GE +++ D + AR V Sbjct: 94 -LSCTDGQKLSGEVL-DCEGGVLRLRTDGGE-------VSVRLDEIKKARTYV 137 >gi|256544695|ref|ZP_05472067.1| hypothetical protein HMPREF0078_0324 [Anaerococcus vaginalis ATCC 51170] gi|256399584|gb|EEU13189.1| hypothetical protein HMPREF0078_0324 [Anaerococcus vaginalis ATCC 51170] Length = 152 Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 8/135 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M L + ++ I + + V I + E KN +L+ F+ +D G +T+ DCE+ S +S Sbjct: 7 MDLISKLKENLESDINGLGYELVDIEFVNEGKNKILRFFIYKD-GGITIDDCEKTSNFLS 65 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD ++I+ Y LEVSSP + RP+ D R ++ EI L +G +K IGKI Sbjct: 66 ERLDEIDLIKSFYYLEVSSPDLSRPLKTDRDLERNKDELL--EIKLKNG--EKFIGKIKE 121 Query: 138 TSETG--FFLEKEKR 150 E F LE E++ Sbjct: 122 IKENSLIFTLENEQK 136 >gi|315639113|ref|ZP_07894280.1| conserved hypothetical protein [Campylobacter upsaliensis JV21] gi|315480817|gb|EFU71454.1| conserved hypothetical protein [Campylobacter upsaliensis JV21] Length = 139 Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 12/114 (10%) Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 +G ++L DC LS+ +SPI DVE + G Y LEVSS G++R + F + G ++ Sbjct: 36 EGGVSLEDCARLSEILSPIFDVEPPVSGEYFLEVSSAGLERKLSTLEHFEKSVGEMLK-- 93 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +++ +K+K+ GK++ FL+ EK +I I F + A+ + Sbjct: 94 --ITTSEKEKIQGKLLKVEGENIFLQDEKA--------EICIEFSQVKKAKTFI 137 >gi|57505608|ref|ZP_00371535.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195] gi|57016155|gb|EAL52942.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195] Length = 138 Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 12/114 (10%) Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 +G ++L DC LS+ +SPI DVE + G Y LEVSS G++R + F + G ++ Sbjct: 35 EGGVSLEDCARLSEILSPIFDVEPPVNGEYFLEVSSAGLERKLSTLEHFEKSVGEMLK-- 92 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +++ +K+K+ GK++ FL+ EK +I I F + A+ + Sbjct: 93 --ITTSEKEKIQGKLLKVEGENIFLQDEKA--------EICIEFSQVKKAKTFI 136 >gi|34223026|sp|Q9CMQ4|RIMP_PASMU RecName: Full=Ribosome maturation factor rimP Length = 151 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 55/87 (63%), Gaps = 1/87 (1%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSD 108 + L ++++++++ G +T+ DC ++S+ +S ILDVE+ I Y LEVSSPG+DR + Sbjct: 33 RYLTVRLYIDKE-GGVTVEDCADVSRQVSAILDVEDPIADKYNLEVSSPGLDRALFTLDQ 91 Query: 109 FLRWNGHVVACEIVLSSGDKQKLIGKI 135 + R+ G + + + D++K GK+ Sbjct: 92 YQRYIGQEIVVHLRIPVLDRRKWQGKL 118 >gi|260914258|ref|ZP_05920731.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325] gi|260631891|gb|EEX50069.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325] Length = 162 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 55/85 (64%), Gaps = 1/85 (1%) Query: 51 LLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFL 110 L ++++++++ G +T+ DC ++S+ +S ILDVE+ I Y LEVSSPG+DR + + + Sbjct: 46 LTVRLYIDKE-GGVTVDDCADVSRQVSAILDVEDPIADKYNLEVSSPGLDRALFTLAQYQ 104 Query: 111 RWNGHVVACEIVLSSGDKQKLIGKI 135 R+ G + + + D++K GK+ Sbjct: 105 RYIGQDIVVHLRIPVLDRRKWQGKL 129 >gi|182435607|ref|YP_001823326.1| hypothetical protein SGR_1814 [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776241|ref|ZP_08235506.1| Ribosome maturation factor rimP [Streptomyces cf. griseus XylebKG-1] gi|226695980|sp|B1VYN8|RIMP_STRGG RecName: Full=Ribosome maturation factor rimP gi|178464123|dbj|BAG18643.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326656574|gb|EGE41420.1| Ribosome maturation factor rimP [Streptomyces cf. griseus XylebKG-1] Length = 167 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 79/151 (52%), Gaps = 9/151 (5%) Query: 25 ISSVIQPVI--EEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 + +++P++ +++ +++S + +L +I V+ ++G + L C ELS+AIS LD Sbjct: 9 LRGLLEPLVSAQQLDLEEIEVSRAGRRGVL-RIIVDSEEG-VELDACAELSRAISEKLDE 66 Query: 83 ENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + + EG Y LEVSSPG DRP+ ++R G + L+ +L+ +I+ E Sbjct: 67 TDAMGEGEYVLEVSSPGADRPLTEHRHYVRATGRL--ARFHLAGDGSGELVARILAVDEE 124 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G LE G K ++FD + AR+ Sbjct: 125 GLDLEVP--GVKGRKPTARRLAFDEIARARV 153 >gi|153939522|ref|YP_001391720.1| hypothetical protein CLI_2478 [Clostridium botulinum F str. Langeland] gi|166987487|sp|A7GG10|RIMP_CLOBL RecName: Full=Ribosome maturation factor rimP gi|152935418|gb|ABS40916.1| conserved hypothetical protein [Clostridium botulinum F str. Langeland] gi|295319746|gb|ADG00124.1| conserved hypothetical protein [Clostridium botulinum F str. 230613] Length = 153 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 70/122 (57%), Gaps = 2/122 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ I+P+ E + + I ++E K L+I+++ ++G ++L CE++S+A+S + Sbjct: 6 LIENLKEQIEPIAEGLDYELYHIEFVKEGKENYLRIYIDSENG-VSLEGCEKVSRAVSEL 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + I+ Y LEVSSPGIDR + ++ G+ + + + K+K G+++ + Sbjct: 65 LDDIDPIQESYYLEVSSPGIDRVLYTDKHLEKYKGYNIVLNLYSAIDKKKKYEGELVDFN 124 Query: 140 ET 141 E Sbjct: 125 EN 126 >gi|241662812|ref|YP_002981172.1| hypothetical protein Rpic12D_1208 [Ralstonia pickettii 12D] gi|309782265|ref|ZP_07676993.1| hypothetical protein HMPREF1004_03620 [Ralstonia sp. 5_7_47FAA] gi|240864839|gb|ACS62500.1| protein of unknown function DUF150 [Ralstonia pickettii 12D] gi|308918958|gb|EFP64627.1| hypothetical protein HMPREF1004_03620 [Ralstonia sp. 5_7_47FAA] Length = 162 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 65/119 (54%), Gaps = 5/119 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I+ + M + V++ LL++++++ + + + DCE++S ++ + +VEN Sbjct: 3 LTDLIEKTLTAMGYELVEVERAPAG--LLRVYIDQAENGVVIEDCEKVSHQLTRVFEVEN 60 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG-TSETG 142 + + RLEVSSPG+DRP+ +DF R+ G + L ++ G I T E G Sbjct: 61 V--NYERLEVSSPGLDRPLRTLADFTRFAGLEAKVTLRLPVNGQKNFTGIIQAPTGEPG 117 >gi|225016951|ref|ZP_03706143.1| hypothetical protein CLOSTMETH_00866 [Clostridium methylpentosum DSM 5476] gi|224950265|gb|EEG31474.1| hypothetical protein CLOSTMETH_00866 [Clostridium methylpentosum DSM 5476] Length = 177 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 69/121 (57%), Gaps = 2/121 (1%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEEL 72 R+ G ++++++P+++++ + +E + L++F+++D G M + DCE + Sbjct: 20 RMAGKGNTVSAVTALVKPIVDDLGLILWDVVFEKEGASWFLRVFIDKD-GIMEVDDCEAV 78 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+ ++P+LD + IE Y LEVSS G+ R + R F R+ G V ++ + +++ + Sbjct: 79 SKRLNPLLDETDPIEQSYYLEVSSAGLGRRLKRPEHFARFLGDEVTVKLYRAVDKRKEFV 138 Query: 133 G 133 G Sbjct: 139 G 139 >gi|237748746|ref|ZP_04579226.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] gi|229380108|gb|EEO30199.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] Length = 162 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/105 (34%), Positives = 62/105 (59%), Gaps = 5/105 (4%) Query: 62 GNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNG---HVVA 118 GN++L DCE++S+ +S +L VE++ + RLEVSSPG+DRP+ + +DF+R+ G HV Sbjct: 42 GNISLEDCEKVSRQLSHVLMVEDV--DYDRLEVSSPGLDRPLKKFADFVRFVGMEAHVKL 99 Query: 119 CEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAIS 163 + V +++ G ++ LE E + E + + L I+ Sbjct: 100 RKPVTGMSNRKTFQGILLAPEGDELALEFEGKDENNNSVLHFTIA 144 >gi|283955315|ref|ZP_06372815.1| hypothetical protein C414_000440054 [Campylobacter jejuni subsp. jejuni 414] gi|283793229|gb|EFC31998.1| hypothetical protein C414_000440054 [Campylobacter jejuni subsp. jejuni 414] Length = 147 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 10/111 (9%) Query: 64 MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVL 123 + L DC LS+ +SPI DVE + G Y LEVSSPG++R + + F + G +V + Sbjct: 45 VNLDDCARLSEILSPIFDVEPPVNGEYFLEVSSPGLERKLGKIEHFAKSIGELVK----I 100 Query: 124 SSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ +K+K+ KIM + LE + EK + F + AR + Sbjct: 101 TTNEKEKIEAKIMSVEDENIILENLENQEK------TTLKFSDIKKARTFI 145 >gi|292669519|ref|ZP_06602945.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] gi|292648842|gb|EFF66814.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] Length = 163 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 55/97 (56%), Gaps = 1/97 (1%) Query: 41 VQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGID 100 V + + E++ L+I+++++ G + + DC+ LS+ + +LD E+ I Y LEVSSPG+D Sbjct: 40 VDVEYVRERDWYLRIYIDKE-GGIDIEDCQGLSERLEEMLDREDFIPDAYILEVSSPGLD 98 Query: 101 RPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 R + + DF R G V + K++ G + G Sbjct: 99 RVLRKPRDFEREQGKAVDVTLYAPFEGKKQWTGTLAG 135 >gi|237746614|ref|ZP_04577094.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] gi|229377965|gb|EEO28056.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] Length = 182 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 65/115 (56%), Gaps = 7/115 (6%) Query: 62 GNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNG---HVVA 118 GN+T+ DCE++S+ +S +L VE++ + RLEVSSPG+DRP+ + DF+R+ G HV Sbjct: 62 GNITVDDCEKVSRQLSHVLTVEDV--DYDRLEVSSPGLDRPLKKWQDFVRFAGMEAHVRL 119 Query: 119 CEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + V G+++ G ++ LE E + + L I+ + ARL+ Sbjct: 120 RKPVTGMGNRKSFQGILLPPEGDELALEFEGNDSESSSVLHFTIT--DIDKARLV 172 >gi|146283632|ref|YP_001173785.1| hypothetical protein PST_3312 [Pseudomonas stutzeri A1501] gi|145571837|gb|ABP80943.1| conserved hypothetical protein [Pseudomonas stutzeri A1501] Length = 182 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 68/117 (58%), Gaps = 2/117 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +++ PV+E + ++ I + + ++ LL+++++ +G + + DCE++S+ +S +LDVE Sbjct: 38 LQALLAPVVEALGYQCWGIEFISQGRHSLLRVYIDHANG-ILIDDCEKVSRQLSGVLDVE 96 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + I Y LEVSSPG+DRP+ ++ G V ++ ++ G + G E Sbjct: 97 DPISVDYTLEVSSPGMDRPLFTIEQYVAHVGDQVKIKLRSPFEGRRNFQGLLRGVEE 153 >gi|146329510|ref|YP_001208969.1| hypothetical protein DNO_0031 [Dichelobacter nodosus VCS1703A] gi|166919100|sp|A5EWZ1|RIMP_DICNV RecName: Full=Ribosome maturation factor rimP gi|146232980|gb|ABQ13958.1| conserved hypothetical protein [Dichelobacter nodosus VCS1703A] Length = 155 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 61/110 (55%), Gaps = 1/110 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +++P++E M F + N +L+I+V+ +G + + D +++ ++PILDVE Sbjct: 7 VTELLRPIVESMGFIWWGLEYHYNSMNSILRIYVDTQEGGIGIDDIVTITEQLNPILDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 I +Y LEVSSPG+DR + + ++ G V C + K+K G Sbjct: 67 QPITTNYTLEVSSPGLDRILFTLAQCEQFIGATVHCRLRFPFEGKRKFQG 116 >gi|160902005|ref|YP_001567586.1| hypothetical protein Pmob_0529 [Petrotoga mobilis SJ95] gi|189040239|sp|A9BH33|RIMP_PETMO RecName: Full=Ribosome maturation factor rimP gi|160359649|gb|ABX31263.1| protein of unknown function DUF150 [Petrotoga mobilis SJ95] Length = 157 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 45/69 (65%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSD 108 KN +L++ +++ DG +++ DCE S+A P LD ++ + Y L VSSPG+DR + K+D Sbjct: 36 KNKILEVVIDKADGYVSIGDCERFSKAFDPWLDEIDLFDKSYELVVSSPGLDRKLRGKAD 95 Query: 109 FLRWNGHVV 117 + R+ G + Sbjct: 96 YERFKGKLA 104 >gi|168180699|ref|ZP_02615363.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916] gi|182668569|gb|EDT80548.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916] Length = 153 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 69/122 (56%), Gaps = 2/122 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ I+P+ E + + I ++E K L+I+++ ++G ++L CE++S+AIS + Sbjct: 6 LIENLKEQIEPIAEGLDYELYHIEFVKEGKENYLRIYIDSENG-VSLEGCEKVSRAISEL 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + I+ Y LEVSSPGIDR + ++ G+ + + K+K G+++ + Sbjct: 65 LDDIDPIQESYYLEVSSPGIDRVLYTDKHLEKYKGYNIVLNLYSPIDKKKKYEGELVDFN 124 Query: 140 ET 141 E Sbjct: 125 EN 126 >gi|226323232|ref|ZP_03798750.1| hypothetical protein COPCOM_01004 [Coprococcus comes ATCC 27758] gi|225208422|gb|EEG90776.1| hypothetical protein COPCOM_01004 [Coprococcus comes ATCC 27758] Length = 155 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 62/107 (57%), Gaps = 2/107 (1%) Query: 28 VIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 ++ P++E+ F + ++E N L+ ++++ G + + DCE +S+ +S ILD ++ I Sbjct: 14 ILNPIVEKHGFDLWDVEYVKEGGNWYLRAYIDKP-GGIMVDDCEVVSRELSDILDEKDFI 72 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 + Y LEVSSPG+ RP+ ++ DF R G V + +++ IG Sbjct: 73 DEAYILEVSSPGLGRPLKKEKDFARSLGEEVEVRTYRAIDRQKEFIG 119 >gi|239626255|ref|ZP_04669286.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520485|gb|EEQ60351.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 155 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 61/107 (57%), Gaps = 3/107 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + + P++EE F V + ++E L+ +++++ G + + DCE +S+ + LD E Sbjct: 11 VERYLLPLMEEHHFELVDVEYVKEAGTWYLRAYIDKE-GGIAVDDCEVISRKLGDWLDKE 69 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 + I+ Y LEVSSPG+ RP+ ++ DF+R G V + DKQK Sbjct: 70 DFIDESYILEVSSPGLGRPLKKEKDFIRSMGKDVDVRL-YRQIDKQK 115 >gi|119511040|ref|ZP_01630160.1| hypothetical protein N9414_09856 [Nodularia spumigena CCY9414] gi|119464291|gb|EAW45208.1| hypothetical protein N9414_09856 [Nodularia spumigena CCY9414] Length = 153 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 1/131 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L I + PV E+ V I ++ +L++ + + L DCE +S+A+ Sbjct: 5 LVPQIIDLATPVAAELGLEVVGIVFHTNQRPPVLRVDIRNSQQDTGLNDCERMSRALEAS 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD II Y LEVSSPGI R ++ +F+ + G V +Q+ IG+++ Sbjct: 65 LDAAEIIPDAYVLEVSSPGISRQLITDREFISFKGFPVIISTSQPYDGQQEWIGQLIRRD 124 Query: 140 ETGFFLEKEKR 150 ET +L ++ R Sbjct: 125 ETTVYLNQKGR 135 >gi|255321999|ref|ZP_05363149.1| conserved hypothetical protein [Campylobacter showae RM3277] gi|255301103|gb|EET80370.1| conserved hypothetical protein [Campylobacter showae RM3277] Length = 142 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/99 (35%), Positives = 59/99 (59%), Gaps = 6/99 (6%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 + +I++ + G + L DCE++S+ +SPI DVE + G Y LEVSSPG++R + + S F+ Sbjct: 28 IYRIYIAKP-GGVNLDDCEKVSRILSPIFDVEPPLTGDYVLEVSSPGLERKLEKPSHFIL 86 Query: 112 WNGHV--VACEIVLSSGDKQKLIGKIMGTSETGFFLEKE 148 G + ++ E+ G+ +KL GKI+ + E E Sbjct: 87 SIGELAKISAEV---DGENKKLKGKILSADDEEISFESE 122 >gi|323485569|ref|ZP_08090914.1| hypothetical protein HMPREF9474_02665 [Clostridium symbiosum WAL-14163] gi|323692917|ref|ZP_08107140.1| ribosome maturation factor rimP [Clostridium symbiosum WAL-14673] gi|323401108|gb|EGA93461.1| hypothetical protein HMPREF9474_02665 [Clostridium symbiosum WAL-14163] gi|323503024|gb|EGB18863.1| ribosome maturation factor rimP [Clostridium symbiosum WAL-14673] Length = 155 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 63/112 (56%), Gaps = 2/112 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + + + PV+EE F V + + E + L+ +++++ G + + DCE +S+ + LD E Sbjct: 11 VEAWLLPVLEEHHFELVDVEYVREVGVWYLRAYIDKE-GGIAVDDCEIISRKLGEWLDKE 69 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 + I+ Y LEVSSPG+ RP+ ++ DF+R G V + +++ G + Sbjct: 70 DFIDDSYILEVSSPGLGRPLKKEKDFVRSMGKDVEVRLYKPLNKQKEYTGAL 121 >gi|311068182|ref|YP_003973105.1| hypothetical protein BATR1942_06100 [Bacillus atrophaeus 1942] gi|310868699|gb|ADP32174.1| hypothetical protein BATR1942_06100 [Bacillus atrophaeus 1942] Length = 157 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 56/89 (62%), Gaps = 2/89 (2%) Query: 30 QPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEG 88 QP+ + + V I ++E +N L++F++ D+G + + +C ++S+ +S LD + I Sbjct: 14 QPIADNLQLELVDIEFVKEGQNWFLRVFIDSDNG-VDIEECAKVSELLSEKLDEADPISQ 72 Query: 89 HYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 +Y LEVSSPG +RP+ +K+DF R G V Sbjct: 73 NYFLEVSSPGAERPLKKKADFDRSLGKNV 101 >gi|291287255|ref|YP_003504071.1| hypothetical protein Dacet_1343 [Denitrovibrio acetiphilus DSM 12809] gi|290884415|gb|ADD68115.1| protein of unknown function DUF150 [Denitrovibrio acetiphilus DSM 12809] Length = 169 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 77/147 (52%), Gaps = 24/147 (16%) Query: 35 EMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE-NIIE-GHYRL 92 +M+ RS E +L+I ++++ G + DC E S+AIS LD E NI+ Y L Sbjct: 38 DMTLRS------ERGGKVLRITIDKETG-PGIEDCTEASRAISAFLDGEDNIVPLDKYHL 90 Query: 93 EVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD---KQKLIGKI--MGTSETGFFLEK 147 EVS+PG++RP+ + DF+R G C+I+ + D ++ GKI + S+ ++EK Sbjct: 91 EVSTPGLERPLRSQQDFVRQTGK--KCKIITVNKDESGRKSYTGKIDSVDDSKVTLYVEK 148 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 E IS D++ A L+V Sbjct: 149 ESAA--------FEISLDNISKANLVV 167 >gi|225390158|ref|ZP_03759882.1| hypothetical protein CLOSTASPAR_03908 [Clostridium asparagiforme DSM 15981] gi|225043752|gb|EEG53998.1| hypothetical protein CLOSTASPAR_03908 [Clostridium asparagiforme DSM 15981] Length = 156 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 61/107 (57%), Gaps = 3/107 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + + + P++EE F V + ++E L+ +++++ G + + DCE +S+ + LD E Sbjct: 12 VEAYLLPLMEEHHFELVDVEYVKEAGTWYLRAYIDKE-GGIAVDDCEVISRKLGDWLDKE 70 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 + I Y LEVSSPG+ RP+ ++ DF+R G V + DKQK Sbjct: 71 DFISESYILEVSSPGLGRPLKKEKDFVRSLGKDVEVRL-YRMRDKQK 116 >gi|170754643|ref|YP_001781965.1| hypothetical protein CLD_2218 [Clostridium botulinum B1 str. Okra] gi|226701221|sp|B1II53|RIMP_CLOBK RecName: Full=Ribosome maturation factor rimP gi|169119855|gb|ACA43691.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra] Length = 153 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 69/122 (56%), Gaps = 2/122 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ I+P+ E + + I ++E K L+I+++ ++G ++L CE++S+A+S + Sbjct: 6 LIENLKKQIEPIAEGLDYELYHIEFVKEGKENYLRIYIDSENG-VSLEGCEKVSRAVSEL 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + I+ Y LEVSSPGIDR + ++ G+ + + K+K G+++ + Sbjct: 65 LDDIDPIQESYYLEVSSPGIDRVLYTDKHLQKYKGYNIVLNLYSPIDKKKKYEGELVDFN 124 Query: 140 ET 141 E Sbjct: 125 EN 126 >gi|332532409|ref|ZP_08408287.1| NusA-like protein [Pseudoalteromonas haloplanktis ANT/505] gi|332038052|gb|EGI74499.1| NusA-like protein [Pseudoalteromonas haloplanktis ANT/505] Length = 151 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 66/120 (55%), Gaps = 2/120 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L D+ +++ P +E + F + ++ ++ L++++ +DG +++ +C + S+ IS I Sbjct: 4 LEQDLVTMLTPAVEMLGFELHGLEFVQAGRHSTLRVYIAHEDG-ISVDNCADASRQISAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DR + ++ + + G V L ++ G ++ S Sbjct: 63 LDVEDPITNEYDLEVSSPGVDRLLFKQDHYEQAQGEEVRVRTKLPQDGRRNFKGDLVAVS 122 >gi|225849797|ref|YP_002730031.1| hypothetical protein PERMA_0235 [Persephonella marina EX-H1] gi|259586177|sp|C0QTL6|RIMP_PERMH RecName: Full=Ribosome maturation factor rimP gi|225645648|gb|ACO03834.1| conserved hypothetical protein [Persephonella marina EX-H1] Length = 151 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 68/117 (58%), Gaps = 4/117 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + ++QP++EE + V I + E +L+I++ +G T+ DCE +S+ I +LD+E+ Sbjct: 9 VKEMLQPLLEERGLKLVDIEYVTEGKPVLRIYIYNPEGT-TIEDCEWISRRIGALLDIED 67 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG-DKQKLIGKIMGTSE 140 +I Y LEVSSPG++R + ++ + G + +IVL DK+ +I ++ E Sbjct: 68 LIPVSYTLEVSSPGLERKLKNVEEYDIFKGRDI--KIVLKEPVDKKNVIKGVLKGRE 122 >gi|153813000|ref|ZP_01965668.1| hypothetical protein RUMOBE_03407 [Ruminococcus obeum ATCC 29174] gi|149830947|gb|EDM86037.1| hypothetical protein RUMOBE_03407 [Ruminococcus obeum ATCC 29174] Length = 129 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 52/81 (64%), Gaps = 2/81 (2%) Query: 27 SVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVENI 85 +++ P++E F V + ++E N L+ ++++ G +T+ DCE +S+A S LD + Sbjct: 40 ALLAPIVEGQGFELVDVEYVKEAGNWYLRGYIDKP-GGITVNDCEAVSRAFSDKLDENDF 98 Query: 86 IEGHYRLEVSSPGIDRPMVRK 106 IE Y +E+SSPG+DRP+ R+ Sbjct: 99 IEDSYIMEISSPGLDRPLKRR 119 >gi|300718579|ref|YP_003743382.1| hypothetical protein [Erwinia billingiae Eb661] gi|299064415|emb|CAX61535.1| Conserved uncharacterized protein [Erwinia billingiae Eb661] Length = 195 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/111 (27%), Positives = 65/111 (58%), Gaps = 1/111 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I +E + + V I + + L+I+++ ++G + + DC ++S +S + DVE+ Sbjct: 53 LTELITAPVEALGYELVGIEFVRGRTSTLRIYIDSENG-INVDDCADVSHQVSAVFDVED 111 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I Y LEVSSPG++RP+ + + ++ G V+ + ++ +++K G I Sbjct: 112 PITVAYNLEVSSPGLERPLFTAAHYAQFIGEEVSLVLRMAVQNRRKWQGII 162 >gi|295399849|ref|ZP_06809830.1| protein of unknown function DUF150 [Geobacillus thermoglucosidasius C56-YS93] gi|312111639|ref|YP_003989955.1| hypothetical protein GY4MC1_2648 [Geobacillus sp. Y4.1MC1] gi|294978252|gb|EFG53849.1| protein of unknown function DUF150 [Geobacillus thermoglucosidasius C56-YS93] gi|311216740|gb|ADP75344.1| protein of unknown function DUF150 [Geobacillus sp. Y4.1MC1] Length = 157 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 78/151 (51%), Gaps = 6/151 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ P++ +M V I ++E KN L++F++ D+G + + C +S+ +S LD Sbjct: 9 VEELVTPILADMDLELVDIEYVKEGKNWFLRVFIDSDEG-VDIEQCGTVSEKLSEKLDEV 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I +Y LEVSSPG +RP+ + +DF R G V + +++ G++ G Sbjct: 68 DPIPHNYFLEVSSPGAERPLKKPADFTRAIGKHVYIKTYEPIEGEKEFEGELTGFDGKIV 127 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + K I I ++ + SARL V Sbjct: 128 SVTVKDKTRKKT----IDIPYEKVASARLAV 154 >gi|299823035|ref|ZP_07054921.1| protein of hypothetical function DUF150 [Listeria grayi DSM 20601] gi|299816564|gb|EFI83802.1| protein of hypothetical function DUF150 [Listeria grayi DSM 20601] Length = 155 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 62/104 (59%), Gaps = 5/104 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +++ P+ EE+ V I+ +E KN L++FV+R G + + +C +S+ +S +D + Sbjct: 8 VEAIVLPITEELGVELVDIAYEKEGKNWFLRVFVDRP-GGIDIDECAAVSEKLSEKMDEQ 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNG---HVVACEIVLS 124 + I +Y LEVSSPG +RP+ ++ DF G HV + E + S Sbjct: 67 DPISENYFLEVSSPGAERPLKKEKDFENAVGKYVHVTSYEPIDS 110 >gi|15614980|ref|NP_243283.1| hypothetical protein BH2417 [Bacillus halodurans C-125] gi|34223162|sp|Q9KA73|RIMP_BACHD RecName: Full=Ribosome maturation factor rimP gi|10175037|dbj|BAB06136.1| BH2417 [Bacillus halodurans C-125] Length = 156 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 81/153 (52%), Gaps = 7/153 (4%) Query: 24 DISS-VIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 DI++ +++P++E++ + +E K+ L++F++ + G + L DC ++S+ +S LD Sbjct: 7 DITAELVKPILEQLDLELYDVEFKKEGKDWFLRVFIDSETG-VDLEDCGKVSERLSEKLD 65 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + IE Y LEVSSPG +RP+ R+ D LR G V + ++ L G++ Sbjct: 66 ETDPIEQAYFLEVSSPGAERPLKREKDLLRSIGKNVHVTLYEPIDGEKALEGELTEFDGE 125 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + + K + I + + SARL V Sbjct: 126 TLTIEIKIKTRKKT----VTIPYAKVASARLAV 154 >gi|187478886|ref|YP_786910.1| hypothetical protein BAV2396 [Bordetella avium 197N] gi|123514388|sp|Q2KXY5|RIMP_BORA1 RecName: Full=Ribosome maturation factor rimP gi|115423472|emb|CAJ50006.1| conserved hypothetical protein [Bordetella avium 197N] Length = 159 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 60/91 (65%), Gaps = 6/91 (6%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 LL++ ++R+DG + + DCE++S+ +S + +VENI + RLEV SPG+DRP+ +++F R Sbjct: 29 LLRVTIDREDG-VRIEDCEQVSRQLSRVYEVENI--DYKRLEVGSPGVDRPLRNEAEFRR 85 Query: 112 WNGHVVACEIVLSSG-DKQKLIGKIMGTSET 141 + G + EI L D +K+ I+ ++T Sbjct: 86 FAGERI--EIKLREAVDGRKVFTGILQEADT 114 >gi|154148890|ref|YP_001407189.1| hypothetical protein CHAB381_1677 [Campylobacter hominis ATCC BAA-381] gi|259585737|sp|A7I3U8|RIMP_CAMHC RecName: Full=Ribosome maturation factor rimP gi|153804899|gb|ABS51906.1| conserved hypothetical protein [Campylobacter hominis ATCC BAA-381] Length = 140 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 70/123 (56%), Gaps = 12/123 (9%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 + ++++ + +G + L DCE LS+ +SPILDVE G + LEVSSPG++R + S+F Sbjct: 28 IYRVYITKKNG-VNLDDCEALSRLLSPILDVEPPTSGAFTLEVSSPGLERKLTTPSNFEN 86 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 G +V +I L +G +K+ G+I+ + L+ + E I+++F+ + A+ Sbjct: 87 SLGELV--KITLKNG--EKISGEILSFKDEILKLKTAENNE-------ISVNFNEIKKAK 135 Query: 172 LIV 174 + Sbjct: 136 TYI 138 >gi|269137761|ref|YP_003294461.1| hypothetical protein ETAE_0403 [Edwardsiella tarda EIB202] gi|267983421|gb|ACY83250.1| conserved hypothetical protein [Edwardsiella tarda EIB202] gi|304557818|gb|ADM40482.1| hypothetical protein ETAF_0358 [Edwardsiella tarda FL6-60] Length = 140 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 62/108 (57%), Gaps = 1/108 (0%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I +E + F V I + ++ L+I+++ ++G +T+ +C ++S +S +LDVE+ I Sbjct: 1 MITAPVEALGFELVGIEFIRGRHSTLRIYIDSEEG-ITVDNCADVSHQVSAVLDVEDPIS 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 Y LEVSSPG+DRP+ + + V + ++ +++K G I Sbjct: 60 VAYYLEVSSPGMDRPLFTAEHYTHFLNEEVTLVLRMAMQNRRKWQGII 107 >gi|186685821|ref|YP_001869017.1| hypothetical protein Npun_R5776 [Nostoc punctiforme PCC 73102] gi|226707751|sp|B2J958|RIMP_NOSP7 RecName: Full=Ribosome maturation factor rimP gi|186468273|gb|ACC84074.1| protein of unknown function DUF150 [Nostoc punctiforme PCC 73102] Length = 153 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 1/131 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L I + PV EE+ V + + +L++ + + L DCE +S+A+ Sbjct: 5 LVPQIIDLATPVAEELGLEVVGVVFHTHQSPPVLRVDIRNPQQDTGLNDCERMSRALEAS 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD I+ Y LEVSSPGI R +V +F+ + G V +Q+ IG+++ Sbjct: 65 LDAAEIVPDTYVLEVSSPGISRQLVTDREFISFKGFPVIISTTPPYDGQQEWIGQLIRRD 124 Query: 140 ETGFFLEKEKR 150 E +L ++ R Sbjct: 125 EITLYLNQKGR 135 >gi|15602626|ref|NP_245698.1| hypothetical protein PM0761 [Pasteurella multocida subsp. multocida str. Pm70] gi|12721059|gb|AAK02845.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 177 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 55/87 (63%), Gaps = 1/87 (1%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSD 108 + L ++++++++ G +T+ DC ++S+ +S ILDVE+ I Y LEVSSPG+DR + Sbjct: 59 RYLTVRLYIDKE-GGVTVEDCADVSRQVSAILDVEDPIADKYNLEVSSPGLDRALFTLDQ 117 Query: 109 FLRWNGHVVACEIVLSSGDKQKLIGKI 135 + R+ G + + + D++K GK+ Sbjct: 118 YQRYIGQEIVVHLRIPVLDRRKWQGKL 144 >gi|187928208|ref|YP_001898695.1| hypothetical protein Rpic_1115 [Ralstonia pickettii 12J] gi|226696216|sp|B2UAA1|RIMP_RALPJ RecName: Full=Ribosome maturation factor rimP gi|187725098|gb|ACD26263.1| protein of unknown function DUF150 [Ralstonia pickettii 12J] Length = 162 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 65/119 (54%), Gaps = 5/119 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I+ + M + V++ LL++++++ + + + DCE++S ++ + +VEN Sbjct: 3 LTDLIEKTLTAMGYELVEVERAPAG--LLRVYIDQAENGVVIEDCEKVSHQLTRVFEVEN 60 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG-TSETG 142 + + RLEVSSPG+DRP+ +DF R+ G + L ++ G I T E G Sbjct: 61 V--NYERLEVSSPGLDRPLRTLADFTRFAGLEAKVTLRLPVDGQKNFTGIIQAPTGEPG 117 >gi|168187911|ref|ZP_02622546.1| conserved hypothetical protein [Clostridium botulinum C str. Eklund] gi|169294239|gb|EDS76372.1| conserved hypothetical protein [Clostridium botulinum C str. Eklund] Length = 154 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 75/127 (59%), Gaps = 4/127 (3%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDV 82 +I+ +I+P++EE+++ I + E+N L+I+++ G + L DCE++S+ +S ILD Sbjct: 10 EINKLIKPIVEELNYELYYIEYVVEQNENYLRIYIDSSKG-INLDDCEKVSRRVSEILDE 68 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI-VLSSGDKQKLIGKIMGTSET 141 ++ I Y LEVSSPGI+R + ++ + + ++ L G ++ GK++ ++ Sbjct: 69 KDPISDSYYLEVSSPGIERVLYTDEHLHKYTNNQIIIKLGKLFEGSREHQ-GKLLSFNDD 127 Query: 142 GFFLEKE 148 +E+E Sbjct: 128 TVVIERE 134 >gi|300691723|ref|YP_003752718.1| hypothetical protein RPSI07_2078 [Ralstonia solanacearum PSI07] gi|299078783|emb|CBJ51443.1| conserved protein of unknown function [Ralstonia solanacearum PSI07] Length = 149 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 52/88 (59%), Gaps = 2/88 (2%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 LL++++++ + + + DCE++S ++ + +VEN+ + RLEVSSPG+DRP+ +DF R Sbjct: 15 LLRVYIDQAETGIVIEDCEKVSHQLTRVFEVENV--NYERLEVSSPGLDRPLRTLTDFTR 72 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTS 139 + G + L ++ G + + Sbjct: 73 FAGQEAKVTLRLPVNGQKNFTGIVQAPA 100 >gi|194289951|ref|YP_002005858.1| hypothetical protein RALTA_A1852 [Cupriavidus taiwanensis LMG 19424] gi|226696147|sp|B3R1E6|RIMP_CUPTR RecName: Full=Ribosome maturation factor rimP gi|193223786|emb|CAQ69793.1| conserved hypothetical protein [Cupriavidus taiwanensis LMG 19424] Length = 162 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 52/82 (63%), Gaps = 2/82 (2%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 LL++++++ + + + DCE++S+ ++ + VEN+ + RLEVSSPG+DRP+ + +DF+R Sbjct: 28 LLRVYIDQPETGIAIEDCEKVSRQLTHVFTVENV--DYERLEVSSPGLDRPLKKLADFVR 85 Query: 112 WNGHVVACEIVLSSGDKQKLIG 133 + G + L ++ G Sbjct: 86 FAGAEARVTLRLPVNGQKNFTG 107 >gi|322806688|emb|CBZ04257.1| clustered with transcription termination protein NusA [Clostridium botulinum H04402 065] Length = 153 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 69/122 (56%), Gaps = 2/122 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ I+P+ E + + I ++E K L+I+++ ++G ++L CE++S+A+S + Sbjct: 6 LIENLKEQIEPIAEGLDYELYHIEFVKEGKENYLRIYIDSENG-VSLEGCEKVSRAVSEL 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + I+ Y LEVSSPGIDR + ++ G+ + + K+K G+++ + Sbjct: 65 LDDIDPIQESYYLEVSSPGIDRVLYTDKHLEKYKGYNIVLNLYSPIDKKKKYEGELVDFN 124 Query: 140 ET 141 E Sbjct: 125 EN 126 >gi|187778985|ref|ZP_02995458.1| hypothetical protein CLOSPO_02580 [Clostridium sporogenes ATCC 15579] gi|187772610|gb|EDU36412.1| hypothetical protein CLOSPO_02580 [Clostridium sporogenes ATCC 15579] Length = 153 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 70/123 (56%), Gaps = 2/123 (1%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 L ++ I+P+++ +S+ I ++E K L+I+++ + G ++L CE++S+A+S Sbjct: 5 SLIENLKKQIEPIVKGLSYDLYHIEFVKEGKENYLRIYIDSESG-VSLEGCEKVSRAVSE 63 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LD + I+ Y LEVSSPGIDR + ++ G+ + + K+K G+++ Sbjct: 64 LLDDIDPIQESYYLEVSSPGIDRVLYTDKHLEKYKGYNIVLNLYSPIDKKKKYEGELVDF 123 Query: 139 SET 141 +E Sbjct: 124 NEN 126 >gi|262037341|ref|ZP_06010806.1| conserved hypothetical protein [Leptotrichia goodfellowii F0264] gi|261748598|gb|EEY35972.1| conserved hypothetical protein [Leptotrichia goodfellowii F0264] Length = 178 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 8/121 (6%) Query: 53 LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRW 112 L+++VE+ DG +L DC ELS I + D N+I + LEVS+PG++R + ++ DF+R+ Sbjct: 53 LRVYVEKKDGTTSLDDCIELSSKIDGLAD--NLINEKFYLEVSTPGVERKLKKEKDFIRF 110 Query: 113 NGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +G + K+ GK+ FL + G+ + I L A L Sbjct: 111 SGEKIKLHSKSQIEGKKTFEGKLEKFENDTIFLNDQNIGK------TVEIPLSKLKKANL 164 Query: 173 I 173 I Sbjct: 165 I 165 >gi|227518529|ref|ZP_03948578.1| protein of hypothetical function DUF150 [Enterococcus faecalis TX0104] gi|227553055|ref|ZP_03983104.1| protein of hypothetical function DUF150 [Enterococcus faecalis HH22] gi|229546054|ref|ZP_04434779.1| protein of hypothetical function DUF150 [Enterococcus faecalis TX1322] gi|229550244|ref|ZP_04438969.1| protein of hypothetical function DUF150 [Enterococcus faecalis ATCC 29200] gi|293383161|ref|ZP_06629078.1| UPF0090 protein [Enterococcus faecalis R712] gi|293387685|ref|ZP_06632230.1| UPF0090 protein [Enterococcus faecalis S613] gi|307268538|ref|ZP_07549911.1| UPF0090 family protein [Enterococcus faecalis TX4248] gi|307273443|ref|ZP_07554688.1| UPF0090 family protein [Enterococcus faecalis TX0855] gi|307277606|ref|ZP_07558698.1| UPF0090 family protein [Enterococcus faecalis TX2134] gi|307279084|ref|ZP_07560142.1| UPF0090 family protein [Enterococcus faecalis TX0860] gi|307288431|ref|ZP_07568419.1| UPF0090 family protein [Enterococcus faecalis TX0109] gi|307291250|ref|ZP_07571134.1| UPF0090 family protein [Enterococcus faecalis TX0411] gi|312899342|ref|ZP_07758675.1| UPF0090 family protein [Enterococcus faecalis TX0470] gi|312904019|ref|ZP_07763187.1| UPF0090 family protein [Enterococcus faecalis TX0635] gi|312907250|ref|ZP_07766241.1| UPF0090 family protein [Enterococcus faecalis DAPTO 512] gi|312909868|ref|ZP_07768716.1| SP14.3 family protein [Enterococcus faecalis DAPTO 516] gi|312952266|ref|ZP_07771141.1| UPF0090 family protein [Enterococcus faecalis TX0102] gi|227074011|gb|EEI11974.1| protein of hypothetical function DUF150 [Enterococcus faecalis TX0104] gi|227177798|gb|EEI58770.1| protein of hypothetical function DUF150 [Enterococcus faecalis HH22] gi|229304682|gb|EEN70678.1| protein of hypothetical function DUF150 [Enterococcus faecalis ATCC 29200] gi|229308827|gb|EEN74814.1| protein of hypothetical function DUF150 [Enterococcus faecalis TX1322] gi|291079500|gb|EFE16864.1| UPF0090 protein [Enterococcus faecalis R712] gi|291082874|gb|EFE19837.1| UPF0090 protein [Enterococcus faecalis S613] gi|306497481|gb|EFM67014.1| UPF0090 family protein [Enterococcus faecalis TX0411] gi|306500602|gb|EFM69931.1| UPF0090 family protein [Enterococcus faecalis TX0109] gi|306504209|gb|EFM73421.1| UPF0090 family protein [Enterococcus faecalis TX0860] gi|306505871|gb|EFM75049.1| UPF0090 family protein [Enterococcus faecalis TX2134] gi|306509970|gb|EFM78995.1| UPF0090 family protein [Enterococcus faecalis TX0855] gi|306515134|gb|EFM83676.1| UPF0090 family protein [Enterococcus faecalis TX4248] gi|310626278|gb|EFQ09561.1| UPF0090 family protein [Enterococcus faecalis DAPTO 512] gi|310629650|gb|EFQ12933.1| UPF0090 family protein [Enterococcus faecalis TX0102] gi|310632495|gb|EFQ15778.1| UPF0090 family protein [Enterococcus faecalis TX0635] gi|311289826|gb|EFQ68382.1| SP14.3 family protein [Enterococcus faecalis DAPTO 516] gi|311293493|gb|EFQ72049.1| UPF0090 family protein [Enterococcus faecalis TX0470] gi|315027495|gb|EFT39427.1| UPF0090 family protein [Enterococcus faecalis TX2137] gi|315030926|gb|EFT42858.1| UPF0090 family protein [Enterococcus faecalis TX4000] gi|315034082|gb|EFT46014.1| UPF0090 family protein [Enterococcus faecalis TX0017] gi|315036750|gb|EFT48682.1| UPF0090 family protein [Enterococcus faecalis TX0027] gi|315145576|gb|EFT89592.1| UPF0090 family protein [Enterococcus faecalis TX2141] gi|315147749|gb|EFT91765.1| UPF0090 family protein [Enterococcus faecalis TX4244] gi|315151450|gb|EFT95466.1| UPF0090 family protein [Enterococcus faecalis TX0012] gi|315153229|gb|EFT97245.1| UPF0090 family protein [Enterococcus faecalis TX0031] gi|315155992|gb|EFU00009.1| UPF0090 family protein [Enterococcus faecalis TX0043] gi|315157836|gb|EFU01853.1| UPF0090 family protein [Enterococcus faecalis TX0312] gi|315160338|gb|EFU04355.1| UPF0090 family protein [Enterococcus faecalis TX0645] gi|315166761|gb|EFU10778.1| UPF0090 family protein [Enterococcus faecalis TX1341] gi|315169948|gb|EFU13965.1| UPF0090 family protein [Enterococcus faecalis TX1342] gi|315174356|gb|EFU18373.1| UPF0090 family protein [Enterococcus faecalis TX1346] gi|315575676|gb|EFU87867.1| UPF0090 family protein [Enterococcus faecalis TX0309B] gi|315578366|gb|EFU90557.1| UPF0090 family protein [Enterococcus faecalis TX0630] gi|315579880|gb|EFU92071.1| UPF0090 family protein [Enterococcus faecalis TX0309A] gi|327534891|gb|AEA93725.1| protein of hypothetical function DUF150 [Enterococcus faecalis OG1RF] gi|329577095|gb|EGG58568.1| hypothetical protein HMPREF9520_01115 [Enterococcus faecalis TX1467] Length = 185 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 67/109 (61%), Gaps = 5/109 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 ++ ++ P++EE +F V++ ++E KN L++F++++ G + + +C +S+ +S LD Sbjct: 36 VTKLVTPILEEQNFELVEVEFVKEGKNWFLRVFIDKE-GGIDIEECAFVSEKLSEKLDAM 94 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS-SGDKQ 129 + I Y LEVSSPG +RP+ ++SD+ + G + + + G+KQ Sbjct: 95 DPDPIPQAYFLEVSSPGAERPLKKESDYEQAVGKYIHISLYQAVDGEKQ 143 >gi|302874659|ref|YP_003843292.1| hypothetical protein Clocel_1784 [Clostridium cellulovorans 743B] gi|307690727|ref|ZP_07633173.1| hypothetical protein Ccel74_21406 [Clostridium cellulovorans 743B] gi|302577516|gb|ADL51528.1| protein of unknown function DUF150 [Clostridium cellulovorans 743B] Length = 153 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/99 (35%), Positives = 61/99 (61%), Gaps = 2/99 (2%) Query: 24 DISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 +I S + VI+++ + I ++E L+ ++E + G + L DCE++S+AIS I+DV Sbjct: 9 EIESRMGSVIKDLGYDLYHIEYVVEGGENFLRFYIENEAG-IGLNDCEKVSRAISDIIDV 67 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 E+ I+ +Y LEVSSPG+ R + + F R+ G V ++ Sbjct: 68 EDPIDENYYLEVSSPGVFRTLFKDEHFKRYIGEEVTVKL 106 >gi|29375839|ref|NP_814993.1| hypothetical protein EF1270 [Enterococcus faecalis V583] gi|255973019|ref|ZP_05423605.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|255976058|ref|ZP_05426644.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|256618849|ref|ZP_05475695.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256762267|ref|ZP_05502847.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|256852912|ref|ZP_05558282.1| conserved hypothetical protein [Enterococcus faecalis T8] gi|256958758|ref|ZP_05562929.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|256962136|ref|ZP_05566307.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|256965335|ref|ZP_05569506.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|257078787|ref|ZP_05573148.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|257082769|ref|ZP_05577130.1| conserved hypothetical protein [Enterococcus faecalis E1Sol] gi|257085470|ref|ZP_05579831.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|257086617|ref|ZP_05580978.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|257089674|ref|ZP_05584035.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|257415888|ref|ZP_05592882.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG] gi|257419090|ref|ZP_05596084.1| conserved hypothetical protein [Enterococcus faecalis T11] gi|257422842|ref|ZP_05599832.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|294780120|ref|ZP_06745493.1| conserved hypothetical protein [Enterococcus faecalis PC1.1] gi|300859867|ref|ZP_07105955.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] gi|34222820|sp|Q835V2|RIMP_ENTFA RecName: Full=Ribosome maturation factor rimP gi|29343301|gb|AAO81063.1| conserved hypothetical protein [Enterococcus faecalis V583] gi|255964037|gb|EET96513.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|255968930|gb|EET99552.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|256598376|gb|EEU17552.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256683518|gb|EEU23213.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|256711371|gb|EEU26409.1| conserved hypothetical protein [Enterococcus faecalis T8] gi|256949254|gb|EEU65886.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|256952632|gb|EEU69264.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|256955831|gb|EEU72463.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|256986817|gb|EEU74119.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|256990799|gb|EEU78101.1| conserved hypothetical protein [Enterococcus faecalis E1Sol] gi|256993500|gb|EEU80802.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|256994647|gb|EEU81949.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|256998486|gb|EEU85006.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|257157716|gb|EEU87676.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG] gi|257160918|gb|EEU90878.1| conserved hypothetical protein [Enterococcus faecalis T11] gi|257164666|gb|EEU94626.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|294452795|gb|EFG21224.1| conserved hypothetical protein [Enterococcus faecalis PC1.1] gi|300850685|gb|EFK78434.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] gi|323480501|gb|ADX79940.1| conserved hypothetical protein [Enterococcus faecalis 62] Length = 157 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 67/109 (61%), Gaps = 5/109 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 ++ ++ P++EE +F V++ ++E KN L++F++++ G + + +C +S+ +S LD Sbjct: 8 VTKLVTPILEEQNFELVEVEFVKEGKNWFLRVFIDKE-GGIDIEECAFVSEKLSEKLDAM 66 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS-SGDKQ 129 + I Y LEVSSPG +RP+ ++SD+ + G + + + G+KQ Sbjct: 67 DPDPIPQAYFLEVSSPGAERPLKKESDYEQAVGKYIHISLYQAVDGEKQ 115 >gi|315165483|gb|EFU09500.1| UPF0090 family protein [Enterococcus faecalis TX1302] Length = 185 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 67/109 (61%), Gaps = 5/109 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 ++ ++ P++EE +F V++ ++E KN L++F++++ G + + +C +S+ +S LD Sbjct: 36 VTKLVTPILEEQNFELVEVEFVKEGKNWFLRVFIDKE-GGIDIEECAFVSEKLSEKLDAM 94 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS-SGDKQ 129 + I Y LEVSSPG +RP+ ++SD+ + G + + + G+KQ Sbjct: 95 DPDPIPQAYFLEVSSPGAERPLKKESDYEQAVGKYIHISLYQAVDGEKQ 143 >gi|34496915|ref|NP_901130.1| hypothetical protein CV_1460 [Chromobacterium violaceum ATCC 12472] gi|51316759|sp|Q7NY15|RIMP_CHRVO RecName: Full=Ribosome maturation factor rimP gi|34102771|gb|AAQ59135.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 141 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 67/120 (55%), Gaps = 11/120 (9%) Query: 53 LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRW 112 ++F+++ G +T+ DC +S + + VEN+ + RLEVSSPG+DRP+ +++DF+R+ Sbjct: 29 FRVFIDKP-GGITVEDCVLVSNHFTRLFMVENV--DYERLEVSSPGLDRPLKKEADFVRF 85 Query: 113 NGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +G + + + ++K G++ G + L+ + R + I F ++ ARL Sbjct: 86 SGQLAKIKTRMPIEQQKKFTGRLAGVEDGSVKLDVDGR--------IVEIPFANIDKARL 137 >gi|73541718|ref|YP_296238.1| hypothetical protein Reut_A2030 [Ralstonia eutropha JMP134] gi|91208397|sp|Q46ZN9|RIMP_RALEJ RecName: Full=Ribosome maturation factor rimP gi|72119131|gb|AAZ61394.1| Protein of unknown function DUF150 [Ralstonia eutropha JMP134] Length = 162 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 53/82 (64%), Gaps = 2/82 (2%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 LL++++++ + + + DCE++S+ ++ +L VEN+ + RLEVSSPG+DRP+ + +D++R Sbjct: 28 LLRVYIDQPETGIVIEDCEKVSRQLTHVLTVENV--DYERLEVSSPGLDRPLKKLADYVR 85 Query: 112 WNGHVVACEIVLSSGDKQKLIG 133 + G + L ++ G Sbjct: 86 FAGAEARVTLRLPVNGQKNFTG 107 >gi|314933444|ref|ZP_07840809.1| conserved hypothetical protein [Staphylococcus caprae C87] gi|313653594|gb|EFS17351.1| conserved hypothetical protein [Staphylococcus caprae C87] Length = 155 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 84/157 (53%), Gaps = 18/157 (11%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++IQP+++++ F V+I ++E K+ L++ ++++ G + L DC S+ IS +D Sbjct: 8 VETIIQPILDDLKFELVEIEYVKEGKDRFLRVSIDKE-GGVDLNDCTLASEKISEAMDEN 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS-----SGDKQKLIGKIMGT 138 + I Y L+V+SPG +RP+ ++ DF + V+ I +S GDK+ L G + Sbjct: 67 DPIPEMYYLDVASPGAERPIKKEKDF----QNAVSQPIFVSLYAPIEGDKEWL-GILKSV 121 Query: 139 SETGFFLE-KEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E KEK K +I I + + AR V Sbjct: 122 DEENIVMEVKEKSKTK-----EIEIPRNKIAKARYAV 153 >gi|259586217|sp|A4VPP2|RIMP_PSEU5 RecName: Full=Ribosome maturation factor rimP gi|327482027|gb|AEA85337.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166] Length = 152 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 68/117 (58%), Gaps = 2/117 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +++ PV+E + ++ I + + ++ LL+++++ +G + + DCE++S+ +S +LDVE Sbjct: 8 LQALLAPVVEALGYQCWGIEFISQGRHSLLRVYIDHANG-ILIDDCEKVSRQLSGVLDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + I Y LEVSSPG+DRP+ ++ G V ++ ++ G + G E Sbjct: 67 DPISVDYTLEVSSPGMDRPLFTIEQYVAHVGDQVKIKLRSPFEGRRNFQGLLRGVEE 123 >gi|268608288|ref|ZP_06142015.1| hypothetical protein RflaF_02144 [Ruminococcus flavefaciens FD-1] Length = 157 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 73/135 (54%), Gaps = 2/135 (1%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQAISP 78 G + +I+P+ +E+ + + ++E + L+IF+++D+G +++ DCE + IS Sbjct: 8 GTEQKVYDLIKPITDELGYYLWDVCYVKEGAMWYLRIFIDQDEG-ISIDDCERATAPISD 66 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 ILD + + Y LEV S G++R +V++ F G V + + ++++ +++G Sbjct: 67 ILDEADPVPQQYMLEVGSAGLERELVKEEHFEVCKGDTVTLKFFRAVDGEKEIRAELVGA 126 Query: 139 SETGFFLEKEKRGEK 153 + G + KE EK Sbjct: 127 DKDGITVIKEDGTEK 141 >gi|290473445|ref|YP_003466312.1| YhbC-like protein (fragment) [Xenorhabdus bovienii SS-2004] gi|289172745|emb|CBJ79516.1| YhbC-like protein (fragment) [Xenorhabdus bovienii SS-2004] Length = 140 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/108 (26%), Positives = 65/108 (60%), Gaps = 1/108 (0%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I +E + F V + + + L+++++ ++G +T+ +C ++S +S +LDVE+ I Sbjct: 1 MISAPVEALGFELVGLEFIRARVSTLRVYIDSEEG-ITVDNCADVSHQVSAVLDVEDPIS 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 Y LE+SSPG++RP+ + + R+ G V+ + ++ ++++ G I Sbjct: 60 VLYNLEISSPGLERPLFKAEHYQRFMGEEVSLVLRMAMQNRRRWQGII 107 >gi|259503124|ref|ZP_05746026.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] gi|259168990|gb|EEW53485.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] Length = 171 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 79/156 (50%), Gaps = 14/156 (8%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILD-V 82 ++ ++ P+++E F I ++E K+ L++++++D G +TL DC +S +S LD V Sbjct: 22 VTDLVTPILDEHHFYLYDIEFVKEGKSWYLRVYIDKD-GGITLNDCAAVSDQLSEALDNV 80 Query: 83 E-NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE- 140 E + I Y LEVSSPG +RP+ + D+ R H + + K+ G ++ S Sbjct: 81 EPDPIPQAYFLEVSSPGAERPLKNEDDYQRAVNHYIHVSLYQQLAGKKVYEGTLVELSAK 140 Query: 141 --TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 T F++K + Q+ I + ARL + Sbjct: 141 EMTLNFMDKTRHR-------QVVIDRSKVAQARLAI 169 >gi|323489586|ref|ZP_08094813.1| hypothetical protein GPDM_09575 [Planococcus donghaensis MPA1U2] gi|323396717|gb|EGA89536.1| hypothetical protein GPDM_09575 [Planococcus donghaensis MPA1U2] Length = 161 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 55/94 (58%), Gaps = 1/94 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I + QP+ E+ V + L+E ++ L+++V+ + + + C +S+ +S ILD Sbjct: 8 IEQIAQPITSELGLELVDVEFLKEGRDWFLRVYVDNPEAPIDIEQCALVSEKLSGILDEL 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + IE +Y LEVSSPG +RP+ ++ DF + G + Sbjct: 68 DPIEQNYFLEVSSPGAERPLKKEKDFEKAIGKFI 101 >gi|160880909|ref|YP_001559877.1| hypothetical protein Cphy_2778 [Clostridium phytofermentans ISDg] gi|226701647|sp|A9KNW8|RIMP_CLOPH RecName: Full=Ribosome maturation factor rimP gi|160429575|gb|ABX43138.1| protein of unknown function DUF150 [Clostridium phytofermentans ISDg] Length = 155 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 67/119 (56%), Gaps = 14/119 (11%) Query: 27 SVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENI 85 ++ P++EE +F V + ++E N L+ +++++ G +T+ DCE +S+ S +LD ++ Sbjct: 13 QLLTPIMEENNFELVDVEYVKEVGNWYLRAYIDKE-GGITVDDCEVVSRRFSDLLDEKDF 71 Query: 86 IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI------------VLSSGDKQKLI 132 I Y LEVSSPG+ R + + DF R G V ++ +L+ D++KLI Sbjct: 72 IPDAYILEVSSPGLGRQLKKDKDFKRSLGEEVEIKLYKAINKQKDFEGILTDFDQEKLI 130 >gi|325265379|ref|ZP_08132103.1| hypothetical protein HMPREF0240_04394 [Clostridium sp. D5] gi|324029380|gb|EGB90671.1| hypothetical protein HMPREF0240_04394 [Clostridium sp. D5] Length = 155 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 62/107 (57%), Gaps = 2/107 (1%) Query: 28 VIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 +++P++ + F V + ++E L+ ++++ G +T+ DCE +S+ S ILD ++ I Sbjct: 14 LLEPIVTGVGFELVDVEYVKEAGTWYLRAYIDKP-GGITVDDCEAVSRKFSDILDEKDYI 72 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 E Y EVSSPG+ RP+ ++ D+ R G V + + +++ +G Sbjct: 73 EDTYIFEVSSPGLGRPLKKEKDYRRSLGEEVEIKTYRAIDRQKEFVG 119 >gi|242373556|ref|ZP_04819130.1| protein of hypothetical function DUF150 [Staphylococcus epidermidis M23864:W1] gi|242348919|gb|EES40521.1| protein of hypothetical function DUF150 [Staphylococcus epidermidis M23864:W1] Length = 178 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 78/152 (51%), Gaps = 8/152 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + S+IQP+++++ F V+I ++E K+ L+I ++++ G + L DC S+ IS +D Sbjct: 31 VESIIQPILDDLKFELVEIEYVKEGKDRFLRISIDKE-GGVDLNDCTLASEKISEAMDEN 89 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I Y L+V+SPG +RP+ + DF V + +++ +G + + Sbjct: 90 DPIPEMYYLDVASPGAERPIKKDKDFHNAVTQPVFISLYAPIEGEKEWLGILQSVDDDNI 149 Query: 144 FLE-KEKRGEKDMNELQIAISFDSLLSARLIV 174 +E KEK K QI I + + AR V Sbjct: 150 VMEVKEKSKTK-----QIEIPRNKIAKARHAV 176 >gi|330685687|gb|EGG97328.1| hypothetical protein SEVCU121_1926 [Staphylococcus epidermidis VCU121] Length = 155 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 79/153 (51%), Gaps = 8/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 +A + +IQPV++E+SF V+I ++E K+ L+I ++++ G + L DC S+ IS Sbjct: 4 IAEQVEPIIQPVLDELSFELVEIEYVKEGKDHFLRISIDKE-GGVDLNDCTLASEKISEA 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +D + I Y L+V+SPG +RP+ + H + + + ++++ +G + Sbjct: 63 MDANDPIPEMYYLDVASPGAERPIKNEKALKNAVSHPIFISLYVPIENEKEWLGILKEVK 122 Query: 140 ETGFFLE-KEKRGEKDMNELQIAISFDSLLSAR 171 E +E KEK K I I + + AR Sbjct: 123 EDIILIEVKEKSKTK-----TIEIPRNKIAKAR 150 >gi|298490030|ref|YP_003720207.1| hypothetical protein Aazo_0596 ['Nostoc azollae' 0708] gi|298231948|gb|ADI63084.1| protein of unknown function DUF150 ['Nostoc azollae' 0708] Length = 153 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 1/121 (0%) Query: 31 PVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGH 89 PV E++ V I L ++ +L++ + + +L DCE +S+ + LD II Sbjct: 15 PVAEQLGLEVVGIVLHTNQRPPVLRVDIRNTQQDTSLDDCERMSRVLEASLDAAEIIPDA 74 Query: 90 YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEK 149 Y LEVSSPGI R ++ +F+ + G V +Q+ G+++ ET +L ++ Sbjct: 75 YVLEVSSPGISRQLITDREFISFKGFPVVISTSQPYDGQQEWTGQLIRRGETKIYLNQKG 134 Query: 150 R 150 R Sbjct: 135 R 135 >gi|163815207|ref|ZP_02206584.1| hypothetical protein COPEUT_01365 [Coprococcus eutactus ATCC 27759] gi|158449402|gb|EDP26397.1| hypothetical protein COPEUT_01365 [Coprococcus eutactus ATCC 27759] Length = 129 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 68/123 (55%), Gaps = 6/123 (4%) Query: 47 EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRK 106 E + L+++ +++ G +T+ DCE +++A+ +LD E+ I Y LEVSSPG+ RP+ ++ Sbjct: 8 EGSDYYLRVYADKE-GGITINDCEIVNRALGDLLDQEDYISDAYILEVSSPGLTRPLKKE 66 Query: 107 SDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGE-----KDMNELQIA 161 +DF R G VV + + ++ G + + +E E E KD++ +++A Sbjct: 67 NDFKRSIGKVVEIKTFVKINGAKEFEGVLKAYDDATVTIEFEDETEVTISRKDISMIRLA 126 Query: 162 ISF 164 + Sbjct: 127 FIY 129 >gi|114777566|ref|ZP_01452547.1| hypothetical protein SPV1_07661 [Mariprofundus ferrooxydans PV-1] gi|114552037|gb|EAU54554.1| hypothetical protein SPV1_07661 [Mariprofundus ferrooxydans PV-1] Length = 158 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 74/123 (60%), Gaps = 7/123 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I S+++P+++E+ ++ISL N LL++ V++ G + E +S+ ++ LDVE Sbjct: 5 IESLLRPIVDELGVEIIKISLGGGGHNPLLKVVVDKA-GGVDSGMLERISRGLALQLDVE 63 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG-TSETG 142 ++I+ +RLEV++PG+D P+ +DF R+ G +++ + G Q+ G+ +G S+ Sbjct: 64 DLIKSAFRLEVTTPGLDWPLTTNADFERYRGE--WLKVMFADGSSQE--GRNLGPVSDHA 119 Query: 143 FFL 145 F L Sbjct: 120 FML 122 >gi|224367579|ref|YP_002601742.1| hypothetical protein HRM2_04640 [Desulfobacterium autotrophicum HRM2] gi|259585763|sp|C0QHM0|RIMP_DESAH RecName: Full=Ribosome maturation factor rimP gi|223690295|gb|ACN13578.1| conserved hypothetical protein [Desulfobacterium autotrophicum HRM2] Length = 155 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 62/110 (56%), Gaps = 2/110 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I S+ +P+ F V + + ++ ++++I++++ G +TL DC +++ + I+DVE Sbjct: 15 IESIAEPLCIAEGFELVHVECVSDQGGMIVRIYLDKP-GGITLDDCVHMTRHLGDIIDVE 73 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 YRLE+SSPG RP+ + +DF R+ G V E V G + K G Sbjct: 74 LEEISAYRLEISSPGAKRPLKKLADFERFLGSRVKVEAVEPIGGRLKFTG 123 >gi|313638096|gb|EFS03363.1| conserved hypothetical protein [Listeria seeligeri FSL S4-171] Length = 155 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 55/87 (63%), Gaps = 2/87 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +++ P+ +E+ V I+ +E N L+IF+++D G + + +C +S+ +S +D Sbjct: 8 VEAIVAPITDELHLELVDIAFEKEGPNWFLRIFIDKD-GGVDIDECAAVSEKVSEKMDES 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFL 110 + I +Y LEVSSPG +RP+ ++ DF+ Sbjct: 67 DPITQNYFLEVSSPGAERPLKKEQDFV 93 >gi|238918422|ref|YP_002931936.1| hypothetical protein NT01EI_0465 [Edwardsiella ictaluri 93-146] gi|238867990|gb|ACR67701.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 140 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 63/108 (58%), Gaps = 1/108 (0%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I +E + F V I + ++ L+I+++ ++G +T+ +C ++S +S +LDVE+ I Sbjct: 1 MITAPVEALGFELVGIEFIRGRHSTLRIYIDSEEG-ITVDNCADVSHQVSAVLDVEDPIS 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 Y LEVSSPG++RP+ + R+ V + ++ +++K G I Sbjct: 60 VAYYLEVSSPGMERPLFIAEHYTRFLNEEVTLVLRMAMQNRRKWQGII 107 >gi|332968910|gb|EGK07957.1| protein of hypothetical function DUF150 [Kingella kingae ATCC 23330] Length = 145 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 63/112 (56%), Gaps = 5/112 (4%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI +++ + + + V L + L ++F++++ G +T+ DC +S ++ + VE Sbjct: 2 DIQNILDTTLPGLGYELVDFELTAQGTL--RVFIDKE-GGITVEDCATVSNHLNRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 ++ + LE+SSPG+DRP+ + SDF+R+ G + L ++ IG+I Sbjct: 59 DV--DYKNLEISSPGLDRPLKKASDFVRFAGSQAKIKTRLPVDGQKNFIGRI 108 >gi|285017806|ref|YP_003375517.1| hypothetical protein XALc_1014 [Xanthomonas albilineans GPE PC73] gi|283473024|emb|CBA15529.1| conserved hypothetical protein [Xanthomonas albilineans] Length = 201 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFV-----ERDDGNMTLRDCEELSQA 75 A +I++++ P ++ + + L L++++ E+ + + + DCE +S+ Sbjct: 5 ANEIANLLGPTVDALGLELLGAEYLPASGGATLRLYIDVPLGEQPERMVNIDDCERVSRE 64 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LDVE+ I G+Y LEVSSPG+DRP+ F R + L +++L G+I Sbjct: 65 VSAQLDVEDPISGNYTLEVSSPGVDRPLFTAEQFARHRDESAKVVLKLPQQGRRRLQGRI 124 Query: 136 M 136 + Sbjct: 125 V 125 >gi|313633404|gb|EFS00240.1| conserved hypothetical protein [Listeria seeligeri FSL N1-067] Length = 155 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 55/87 (63%), Gaps = 2/87 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +++ P+ +E+ V I+ +E N L+IF+++D G + + +C +S+ +S +D Sbjct: 8 VEAIVAPITDELHLELVDIAFEKEGPNWFLRIFIDKD-GGVDIDECAAVSEKVSEKMDES 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFL 110 + I +Y LEVSSPG +RP+ ++ DF+ Sbjct: 67 DPITQNYFLEVSSPGAERPLKKEQDFV 93 >gi|16800426|ref|NP_470694.1| hypothetical protein lin1358 [Listeria innocua Clip11262] gi|34222948|sp|Q92C33|RIMP_LISIN RecName: Full=Ribosome maturation factor rimP gi|16413831|emb|CAC96589.1| lin1358 [Listeria innocua Clip11262] gi|313619130|gb|EFR90920.1| conserved hypothetical protein [Listeria innocua FSL S4-378] Length = 155 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 56/94 (59%), Gaps = 2/94 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +++ P+ +E+ V I+ +E N L+IF+++D G + + +C +S+ +S +D Sbjct: 8 VEAIVAPITDELQLELVDIAFEKEGPNWFLRIFIDKD-GGVDIDECAAVSEKVSEKMDES 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + I +Y LEVSSPG +RP+ ++ DF G V Sbjct: 67 DPITQNYFLEVSSPGAERPLKKEQDFENAVGKYV 100 >gi|254468932|ref|ZP_05082338.1| hypothetical protein KB13_1157 [beta proteobacterium KB13] gi|207087742|gb|EDZ65025.1| hypothetical protein KB13_1157 [beta proteobacterium KB13] Length = 158 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 80/145 (55%), Gaps = 7/145 (4%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNM-TLRDCEELSQAISP 78 G D+ +I I+ + + V+ + L++IF+ D+GN+ ++ DC ++S ++ Sbjct: 12 GFVMDLEKIISESIQNIGYELVECEH-NHNSGLIRIFI--DNGNLISVDDCVKVSNHLNR 68 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +L VE + RLEVSSPG+DR +++ +D+ R+ G + ++ +++K GK++ + Sbjct: 69 VLSVE-LDYDFSRLEVSSPGVDRKLIKLADYKRFEGEKIKIKLYSPINNQKKFDGKLIAS 127 Query: 139 SET--GFFLEKEKRGEKDMNELQIA 161 E L EK E +E+Q+A Sbjct: 128 DEKKIKILLSDEKILEVPFDEIQMA 152 >gi|315302975|ref|ZP_07873695.1| conserved hypothetical protein [Listeria ivanovii FSL F6-596] gi|313628655|gb|EFR97068.1| conserved hypothetical protein [Listeria ivanovii FSL F6-596] Length = 155 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 55/87 (63%), Gaps = 2/87 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +++ P+ +E+ V I+ +E N L+IF+++D G + + +C +S+ +S +D Sbjct: 8 VEAIVAPITDELHLELVDIAFEKEGPNWFLRIFIDKD-GGVDIDECAAVSEKVSEKMDES 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFL 110 + I +Y LEVSSPG +RP+ ++ DF+ Sbjct: 67 DPITQNYFLEVSSPGAERPLKKEQDFV 93 >gi|119477403|ref|ZP_01617594.1| hypothetical protein GP2143_00477 [marine gamma proteobacterium HTCC2143] gi|119449329|gb|EAW30568.1| hypothetical protein GP2143_00477 [marine gamma proteobacterium HTCC2143] Length = 151 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/112 (26%), Positives = 63/112 (56%), Gaps = 2/112 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ ++ PV E + ++ + L K +++I+++ DG + + DC ++S+ + + DVE Sbjct: 8 LADLVAPVAEALGYQLWGVEYLSHGKQSVVRIYIDSPDG-IDVDDCAKVSRQVGSVFDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 + I G Y LEVSSPG+DRP+ + + G V ++ + ++ G++ Sbjct: 67 DPIMGEYTLEVSSPGMDRPLFALEQYRPYVGEQVKIKLRTAFDGRRNFSGRM 118 >gi|313673262|ref|YP_004051373.1| hypothetical protein Calni_1302 [Calditerrivibrio nitroreducens DSM 19672] gi|312940018|gb|ADR19210.1| protein of unknown function DUF150 [Calditerrivibrio nitroreducens DSM 19672] Length = 157 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 3/87 (3%) Query: 53 LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRW 112 L+IF++++ N+TL DC S+ IS LD E++I Y LEVSSPG++RP+ D+ ++ Sbjct: 41 LRIFLDKE--NLTLEDCANFSKEISKWLDKEDLIPHKYNLEVSSPGLNRPLRNIDDYKKY 98 Query: 113 NGHVVACEIVLS-SGDKQKLIGKIMGT 138 G E+ S ++ G I G Sbjct: 99 IGRKCKVELFKKDSSGRKNYTGYIKGV 125 >gi|116872752|ref|YP_849533.1| hypothetical protein lwe1336 [Listeria welshimeri serovar 6b str. SLCC5334] gi|123460990|sp|A0AIC2|RIMP_LISW6 RecName: Full=Ribosome maturation factor rimP gi|116741630|emb|CAK20754.1| conserved hypothetical protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 155 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 54/86 (62%), Gaps = 2/86 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++++P+ E+ V I+ +E N L+IF+++D G + + +C +S+ +S +D Sbjct: 8 VEAIVEPITNELQLELVDIAFEKEGPNWFLRIFIDKD-GGVDIDECAAVSEKVSEKMDES 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDF 109 + I +Y LEVSSPG +RP+ ++ DF Sbjct: 67 DPITQNYFLEVSSPGAERPLKKEQDF 92 >gi|116624261|ref|YP_826417.1| hypothetical protein Acid_5179 [Candidatus Solibacter usitatus Ellin6076] gi|116227423|gb|ABJ86132.1| protein of unknown function DUF150 [Candidatus Solibacter usitatus Ellin6076] Length = 174 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 45/64 (70%), Gaps = 1/64 (1%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 L++I +++ +G +T DC+ +S + IL+ E+ I GHY LEVSSPG++R +++ D+ R Sbjct: 58 LVRISIDKPEG-VTHADCQTVSDKVGEILEAEDAIPGHYTLEVSSPGVERKLLKPQDYQR 116 Query: 112 WNGH 115 ++G Sbjct: 117 FHGQ 120 >gi|56963997|ref|YP_175728.1| hypothetical protein ABC2232 [Bacillus clausii KSM-K16] gi|81365999|sp|Q5WFT8|RIMP_BACSK RecName: Full=Ribosome maturation factor rimP gi|56910240|dbj|BAD64767.1| conserved hypothetical protein [Bacillus clausii KSM-K16] Length = 156 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/149 (24%), Positives = 75/149 (50%), Gaps = 6/149 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + + +P++ E+ V++ +E N L++F++ D G + L DCE +S+ +S +LD Sbjct: 9 VEQLAEPIVRELHLELVEVEYKKEGPNWYLRVFIDADRG-VNLDDCEAVSEKLSEVLDEV 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I+ Y LEVSSPG +RP+ +++D + G V ++ G ++ + Sbjct: 68 DPIKEAYFLEVSSPGAERPLKKEADVKKAVGKGVYVTTYEPIDGQKAFEGVLVSFEDATL 127 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 +E G+ + + + + +ARL Sbjct: 128 VIE----GKNKTRTVTYTVPYAKVANARL 152 >gi|46907547|ref|YP_013936.1| hypothetical protein LMOf2365_1338 [Listeria monocytogenes serotype 4b str. F2365] gi|47093945|ref|ZP_00231682.1| conserved hypothetical protein [Listeria monocytogenes str. 4b H7858] gi|226223922|ref|YP_002758029.1| hypothetical protein Lm4b_01329 [Listeria monocytogenes Clip81459] gi|254824620|ref|ZP_05229621.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|254852629|ref|ZP_05241977.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|254932364|ref|ZP_05265723.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|254993852|ref|ZP_05276042.1| hypothetical protein LmonocytoFSL_13365 [Listeria monocytogenes FSL J2-064] gi|255521786|ref|ZP_05389023.1| hypothetical protein LmonocFSL_11262 [Listeria monocytogenes FSL J1-175] gi|300765439|ref|ZP_07075421.1| hypothetical protein LMHG_11499 [Listeria monocytogenes FSL N1-017] gi|51316675|sp|Q720A1|RIMP_LISMF RecName: Full=Ribosome maturation factor rimP gi|259585784|sp|C1L2M7|RIMP_LISMC RecName: Full=Ribosome maturation factor rimP gi|46880815|gb|AAT04113.1| conserved hypothetical protein [Listeria monocytogenes serotype 4b str. F2365] gi|47017683|gb|EAL08479.1| conserved hypothetical protein [Listeria monocytogenes str. 4b H7858] gi|225876384|emb|CAS05093.1| unnamed protein product [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605944|gb|EEW18552.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|293583920|gb|EFF95952.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|293593858|gb|EFG01619.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|300513876|gb|EFK40941.1| hypothetical protein LMHG_11499 [Listeria monocytogenes FSL N1-017] gi|328468604|gb|EGF39604.1| ribosome maturation protein RimP [Listeria monocytogenes 1816] gi|328475043|gb|EGF45831.1| ribosome maturation protein RimP [Listeria monocytogenes 220] gi|332311764|gb|EGJ24859.1| Ribosome maturation factor rimP [Listeria monocytogenes str. Scott A] Length = 155 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 54/86 (62%), Gaps = 2/86 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +++ P+ +E+ V I+ +E N L+IF+++D G + + +C +S+ +S +D Sbjct: 8 VEAIVTPITDELQLELVDIAFEKEGPNWFLRIFIDKD-GGVDIDECAAVSEKVSEKMDEN 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDF 109 + I +Y LEVSSPG +RP+ ++ DF Sbjct: 67 DPITQNYFLEVSSPGAERPLKKEQDF 92 >gi|313623921|gb|EFR94029.1| conserved hypothetical protein [Listeria innocua FSL J1-023] Length = 155 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 56/94 (59%), Gaps = 2/94 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +++ P+ +E+ V I+ +E N L+IF+++D G + + +C +S+ +S +D Sbjct: 8 VEAIVAPITDELQLELVDIAFEKEGPNWFLRIFIDKD-GGVDIDECAAVSEKVSEKMDES 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + I +Y LEVSSPG +RP+ ++ DF G V Sbjct: 67 DPITQNYFLEVSSPGAERPLKKEQDFENAVGKYV 100 >gi|169350437|ref|ZP_02867375.1| hypothetical protein CLOSPI_01205 [Clostridium spiroforme DSM 1552] gi|169292757|gb|EDS74890.1| hypothetical protein CLOSPI_01205 [Clostridium spiroforme DSM 1552] Length = 155 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 53/86 (61%), Gaps = 1/86 (1%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 M L I +I+P+++ I +++K L+IFVE+++G + + C +S+ IS Sbjct: 1 MELLNKIKEMIEPILQSNDVYLDDIEYVQDKGEWYLRIFVEKNEGFLDMDTCVAVSEQIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPM 103 LD E+ I+G Y LEVSSPG+++P+ Sbjct: 61 QKLDEEDPIKGEYYLEVSSPGVEKPL 86 >gi|113868283|ref|YP_726772.1| hypothetical protein H16_A2308 [Ralstonia eutropha H16] gi|123032887|sp|Q0K9B7|RIMP_RALEH RecName: Full=Ribosome maturation factor rimP gi|113527059|emb|CAJ93404.1| conserved hypothetical protein [Ralstonia eutropha H16] Length = 162 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 52/82 (63%), Gaps = 2/82 (2%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 LL++++++ + + + DCE++S+ ++ + VEN+ + RLEVSSPG+DRP+ + +D++R Sbjct: 28 LLRVYIDQPETGIAIEDCEKVSRQLTHVFTVENV--DYERLEVSSPGLDRPLKKLADYVR 85 Query: 112 WNGHVVACEIVLSSGDKQKLIG 133 + G + L ++ G Sbjct: 86 FAGEEARVTLRLPVNGQKNFTG 107 >gi|16803361|ref|NP_464846.1| hypothetical protein lmo1321 [Listeria monocytogenes EGD-e] gi|224499903|ref|ZP_03668252.1| hypothetical protein LmonF1_09559 [Listeria monocytogenes Finland 1988] gi|224501736|ref|ZP_03670043.1| hypothetical protein LmonFR_04337 [Listeria monocytogenes FSL R2-561] gi|254828681|ref|ZP_05233368.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|254829922|ref|ZP_05234577.1| hypothetical protein Lmon1_01135 [Listeria monocytogenes 10403S] gi|254898514|ref|ZP_05258438.1| hypothetical protein LmonJ_01825 [Listeria monocytogenes J0161] gi|254911995|ref|ZP_05262007.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254936322|ref|ZP_05268019.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|284801706|ref|YP_003413571.1| hypothetical protein LM5578_1460 [Listeria monocytogenes 08-5578] gi|284994848|ref|YP_003416616.1| hypothetical protein LM5923_1413 [Listeria monocytogenes 08-5923] gi|315282174|ref|ZP_07870639.1| conserved hypothetical protein [Listeria marthii FSL S4-120] gi|34222940|sp|Q8Y7G0|RIMP_LISMO RecName: Full=Ribosome maturation factor rimP gi|16410737|emb|CAC99399.1| lmo1321 [Listeria monocytogenes EGD-e] gi|258601085|gb|EEW14410.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|258608912|gb|EEW21520.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|284057268|gb|ADB68209.1| hypothetical protein LM5578_1460 [Listeria monocytogenes 08-5578] gi|284060315|gb|ADB71254.1| hypothetical protein LM5923_1413 [Listeria monocytogenes 08-5923] gi|293589959|gb|EFF98293.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|313614178|gb|EFR87857.1| conserved hypothetical protein [Listeria marthii FSL S4-120] Length = 155 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 54/86 (62%), Gaps = 2/86 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +++ P+ +E+ V I+ +E N L+IF+++D G + + +C +S+ +S +D Sbjct: 8 VEAIVAPITDELQLELVDIAFEKEGPNWFLRIFIDKD-GGVDIDECAAVSEKVSEKMDEN 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDF 109 + I +Y LEVSSPG +RP+ ++ DF Sbjct: 67 DPITQNYFLEVSSPGAERPLKKEQDF 92 >gi|269127539|ref|YP_003300909.1| hypothetical protein Tcur_3333 [Thermomonospora curvata DSM 43183] gi|268312497|gb|ACY98871.1| protein of unknown function DUF150 [Thermomonospora curvata DSM 43183] Length = 205 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 10/121 (8%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII-EGHYRLEVSSPGIDRPMVRKS 107 + L++I V+ DG +TL D LSQA+S LD +++ E Y LEV+SPG+DRP+ Sbjct: 64 RRRLVRIVVD-ADGGVTLEDTATLSQAVSAALDDTDVMGEAPYVLEVTSPGVDRPLTEPR 122 Query: 108 DFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKR----GEKDMNELQIAIS 163 + R G +V + D ++ G+++ E LE R G ++ ++ + Sbjct: 123 HWRRATGRLVRAALA----DGGQVEGRVVAADEEAVVLEVAGRRRRFGHGELGRGRVQVE 178 Query: 164 F 164 F Sbjct: 179 F 179 >gi|94971245|ref|YP_593293.1| hypothetical protein Acid345_4219 [Candidatus Koribacter versatilis Ellin345] gi|259585655|sp|Q1IIT1|RIMP_ACIBL RecName: Full=Ribosome maturation factor rimP gi|94553295|gb|ABF43219.1| protein of unknown function DUF150 [Candidatus Koribacter versatilis Ellin345] Length = 169 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/70 (42%), Positives = 48/70 (68%), Gaps = 2/70 (2%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEG-HYRLEVSSPGIDRPMVRKS 107 K +L+I +++ +G +T DC +S +S ILDVE+++ G Y LEVSSPG+DR + + + Sbjct: 32 KARMLRITIDKPEG-VTHDDCSHVSNEVSTILDVEDVVPGASYTLEVSSPGLDRKISKPA 90 Query: 108 DFLRWNGHVV 117 DF R+ G +V Sbjct: 91 DFERFTGSLV 100 >gi|82702987|ref|YP_412553.1| hypothetical protein Nmul_A1866 [Nitrosospira multiformis ATCC 25196] gi|91208392|sp|Q2Y7W0|RIMP_NITMU RecName: Full=Ribosome maturation factor rimP gi|82411052|gb|ABB75161.1| Protein of unknown function DUF150 [Nitrosospira multiformis ATCC 25196] Length = 142 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 63/110 (57%), Gaps = 4/110 (3%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 D+ +++P + + + V + LL+IF+++ G + + DC +S +S L VE Sbjct: 2 DLYELLEPTLAGLGYELVDLER-SPGGKLLRIFIDKP-GGVNVDDCVTVSNHLSRFLAVE 59 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 N+ + RLEVSSPG+DRP+ + +DF+R+ G V + ++ ++ +G Sbjct: 60 NV--DYDRLEVSSPGLDRPLKKTADFIRFAGESVKLRLRVALQGQRNFVG 107 >gi|51892656|ref|YP_075347.1| hypothetical protein STH1518 [Symbiobacterium thermophilum IAM 14863] gi|81388945|sp|Q67P90|RIMP_SYMTH RecName: Full=Ribosome maturation factor rimP gi|51856345|dbj|BAD40503.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM 14863] Length = 160 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 76/155 (49%), Gaps = 13/155 (8%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + + P + V + L++E L+++++++ G + DCE LS+ + LD E Sbjct: 12 VEELAAPHAAALGLELVGVELVKEGAYRYLRVYIDKE-GGVGFDDCEALSRVVDAQLD-E 69 Query: 84 NIIEGHYRL-EVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE-- 140 + Y EVSSPG+DRP+ R++DF R+ GH V ++ +G++ G + Sbjct: 70 ILPNPPYDFFEVSSPGLDRPLKREADFARYVGHKVVVTTYAPVDGQKSFVGELQGLVDGR 129 Query: 141 -TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 T E + RG+ IA+ + SARL V Sbjct: 130 VTLTLTEGKGRGQ------TIALDRKQVASARLYV 158 >gi|227875843|ref|ZP_03993969.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243] gi|269977479|ref|ZP_06184451.1| conserved hypothetical protein [Mobiluncus mulieris 28-1] gi|306819124|ref|ZP_07452838.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239] gi|307700024|ref|ZP_07637073.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16] gi|227843591|gb|EEJ53774.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243] gi|269934395|gb|EEZ90957.1| conserved hypothetical protein [Mobiluncus mulieris 28-1] gi|304648100|gb|EFM45411.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239] gi|307614785|gb|EFN94005.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16] Length = 178 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 81/161 (50%), Gaps = 16/161 (9%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVE--RDDGNMTLRDCEELS 73 G++ +A ++S ++ P + ++ ++ + KN ++IF++ G + E S Sbjct: 9 GNVDIAAEVSQLLAPTVTQLGLFLEKVCVKGSKNSRQVEIFLDLPAGSGEIGFERLEAAS 68 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 Q IS ++D + +EG Y LEVS+ G + + F+R G EI ++ QK +G Sbjct: 69 QEISRLMDSADPVEGKYNLEVSTLGAEHALDNPRLFVRAVGR--DAEITVAG---QKRVG 123 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +I+ ET F E++ + Q ISF +L SAR +V Sbjct: 124 RILAAGETDFTWEEDGK--------QETISFSALQSARTVV 156 >gi|307155147|ref|YP_003890531.1| hypothetical protein Cyan7822_5377 [Cyanothece sp. PCC 7822] gi|306985375|gb|ADN17256.1| protein of unknown function DUF150 [Cyanothece sp. PCC 7822] Length = 153 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 63/121 (52%), Gaps = 1/121 (0%) Query: 31 PVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGH 89 P+ E++ V++ K +L++ + + +L DCE++S+++ LD +I G Sbjct: 15 PIAEQLGLEIVEVVFQTNKRPPVLRVDIRNKSSDTSLNDCEQMSRSLEANLDATELIPGS 74 Query: 90 YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEK 149 Y LE+SSPGI R + +F+ + G + + ++++ GK+ G E +L K+ Sbjct: 75 YVLEISSPGISRQLNSDREFIVFKGFDIIVKTDTPFENQKEWRGKLQGRDEQAVYLNKKG 134 Query: 150 R 150 R Sbjct: 135 R 135 >gi|310778371|ref|YP_003966704.1| protein of unknown function DUF150 [Ilyobacter polytropus DSM 2926] gi|309747694|gb|ADO82356.1| protein of unknown function DUF150 [Ilyobacter polytropus DSM 2926] Length = 158 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 3/92 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I + PV E V I L++ +++++E+ D +TL DC +S I DV+ Sbjct: 13 IWDLTTPVASEFGLDIVDIEYLQDGGYWYVRVYIEKPDAEITLVDCANVSNRIEE--DVD 70 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGH 115 +I+ + LEVSSPGI+RP+ + DF+R+ G Sbjct: 71 ALIDKKFFLEVSSPGIERPLKSEKDFIRFVGE 102 >gi|254516619|ref|ZP_05128678.1| conserved hypothetical protein [gamma proteobacterium NOR5-3] gi|219675042|gb|EED31409.1| conserved hypothetical protein [gamma proteobacterium NOR5-3] Length = 151 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 64/117 (54%), Gaps = 2/117 (1%) Query: 25 ISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +++ P +E + F L++ K+ +L++++E ++G + + DC +S+ + +LDVE Sbjct: 8 LQTLLAPTVEALGFELWGTEYLIQGKHSVLRLYIESENG-VQVSDCAAVSEQVGAVLDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 I G Y LEVSSPG+DR + R + + G + + ++K G + G + Sbjct: 67 EPISGEYLLEVSSPGVDRRLFRLEQYAAYVGEELELRLRSPFEGRRKFKGILRGVED 123 >gi|261367203|ref|ZP_05980086.1| hypothetical protein SUBVAR_05255 [Subdoligranulum variabile DSM 15176] gi|282570801|gb|EFB76336.1| hypothetical protein SUBVAR_05255 [Subdoligranulum variabile DSM 15176] Length = 163 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 2/104 (1%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 G A + ++++P +E M R + +E + L++ ++RD+ + CE +S+AI P Sbjct: 9 GAAKTVETLVRPTVEGMGLRLWDVRFEKEGPDWFLRVLIDRDE-PLDTDTCEAVSRAIDP 67 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV 122 ILD + I+ Y LEV SPG+ R + R + G A ++ Sbjct: 68 ILDEADPIDQSYYLEVGSPGLGRRLTRPEHYEALRGQKCAAHLI 111 >gi|289434602|ref|YP_003464474.1| hypothetical protein lse_1237 [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170846|emb|CBH27388.1| conserved hypothetical protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 155 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 55/87 (63%), Gaps = 2/87 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +++ P+ +E+ V I+ +E N L++F+++D G + + +C +S+ +S +D Sbjct: 8 VEAIVAPITDELHLELVDIAFEKEGPNWFLRVFIDKD-GGVDIDECAAVSEKVSEKMDES 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFL 110 + I +Y LEVSSPG +RP+ ++ DF+ Sbjct: 67 DPITQNYFLEVSSPGAERPLKKEQDFV 93 >gi|218439320|ref|YP_002377649.1| hypothetical protein PCC7424_2360 [Cyanothece sp. PCC 7424] gi|226701263|sp|B7KIU5|RIMP_CYAP7 RecName: Full=Ribosome maturation factor rimP gi|218172048|gb|ACK70781.1| protein of unknown function DUF150 [Cyanothece sp. PCC 7424] Length = 155 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 1/132 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 L I + P+ E++ V++ K +L++ + + L DCE++S+++ Sbjct: 5 LIPQIIDLATPIAEKLGLEIVEVVFQTNKRPPVLRLDIRNLSSDTGLDDCEQMSRSLEAT 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD +I G Y LE+SSPGI R + +F+ + G V + ++++ G + G Sbjct: 65 LDATELIPGSYVLEISSPGISRQLTSDREFIAFKGFEVIVKTYTPYENQKEWRGNLQGRD 124 Query: 140 ETGFFLEKEKRG 151 E +L K+ R Sbjct: 125 EQAVYLNKKGRA 136 >gi|218288336|ref|ZP_03492635.1| protein of unknown function DUF150 [Alicyclobacillus acidocaldarius LAA1] gi|218241695|gb|EED08868.1| protein of unknown function DUF150 [Alicyclobacillus acidocaldarius LAA1] Length = 157 Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 74/149 (49%), Gaps = 6/149 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ P++E + V I +E KN L++++++ G + + DC +S+ +S LD Sbjct: 10 VERLVLPIVEREAVELVDIEYTKEGKNWYLRVYIDKP-GGVDIDDCSRVSEQLSEELDRV 68 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I Y LEVSSPG +RP+ R +DF R G V + + G ++ Sbjct: 69 DPIPNAYFLEVSSPGAERPLKRPADFERAVGRYVHVSLYEPLEGAKTHEGTLVSYDGERL 128 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 LE ++R + + +A+ + + ARL Sbjct: 129 ILEIKRRSKT----VTLAVPMEKIAHARL 153 >gi|169334800|ref|ZP_02861993.1| hypothetical protein ANASTE_01206 [Anaerofustis stercorihominis DSM 17244] gi|169257538|gb|EDS71504.1| hypothetical protein ANASTE_01206 [Anaerofustis stercorihominis DSM 17244] Length = 172 Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 57/91 (62%) Query: 47 EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRK 106 E N +L++++ER +G ++L + +++ +S +LD E+ IE Y LEVSSPG++R + ++ Sbjct: 49 EGNNKVLRLYIERIEGKVSLDEISTVNRLLSDLLDEEDFIEEEYILEVSSPGVNRVIKKE 108 Query: 107 SDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 DF+++ G V ++ K++ G + G Sbjct: 109 KDFIKFKGSKVDVKLYKPLNGKKQFTGILEG 139 >gi|294670567|ref|ZP_06735446.1| hypothetical protein NEIELOOT_02289 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307692|gb|EFE48935.1| hypothetical protein NEIELOOT_02289 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 143 Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 62/112 (55%), Gaps = 5/112 (4%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++ + + + V L + L ++F++++ G +T+ DC +S +S + VE Sbjct: 2 DIQQILDKTLPGLGYELVDFELTAQGTL--RVFIDKE-GGITVEDCATVSNHLSRLFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 ++ + LE+SSPG+DRP+ + +DF+R+ G + L ++ IG+I Sbjct: 59 DV--DYKNLEISSPGLDRPLKKTADFVRFAGQQAKIKTRLPIDGQKNFIGRI 108 >gi|259586206|sp|Q01W33|RIMP_SOLUE RecName: Full=Ribosome maturation factor rimP Length = 153 Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 45/64 (70%), Gaps = 1/64 (1%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 L++I +++ +G +T DC+ +S + IL+ E+ I GHY LEVSSPG++R +++ D+ R Sbjct: 37 LVRISIDKPEG-VTHADCQTVSDKVGEILEAEDAIPGHYTLEVSSPGVERKLLKPQDYQR 95 Query: 112 WNGH 115 ++G Sbjct: 96 FHGQ 99 >gi|258511412|ref|YP_003184846.1| hypothetical protein Aaci_1431 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478138|gb|ACV58457.1| protein of unknown function DUF150 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 157 Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 78/152 (51%), Gaps = 12/152 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ P++E + V I +E KN L++++++ G + + DC +S+ +S LD Sbjct: 10 VERLVLPIVEREAVELVDIEYTKEGKNWYLRVYIDKP-GGVDIDDCSRVSEQLSEELDRV 68 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNG---HVVACEIVLSSGDKQKLIGKIMGTSE 140 + I Y LEVSSPG +RP+ R +DF R G HV E ++ + + G ++ Sbjct: 69 DPIPNAYFLEVSSPGAERPLKRPADFERAVGRYVHVSLYEPLMGAKTHE---GTLVSYDG 125 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 LE ++R + + +A+ + + ARL Sbjct: 126 ERLILEIKRRSKT----VTLAVPMEKIAHARL 153 >gi|229829177|ref|ZP_04455246.1| hypothetical protein GCWU000342_01262 [Shuttleworthia satelles DSM 14600] gi|229792340|gb|EEP28454.1| hypothetical protein GCWU000342_01262 [Shuttleworthia satelles DSM 14600] Length = 157 Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 53/82 (64%), Gaps = 2/82 (2%) Query: 31 PVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGH 89 P++E+ F V + ++E L+ ++++ G +T+ DC ++S+ ++ ILD E+ I+G Sbjct: 17 PILEKDGFSLVDVEYVKEGGQYYLRAYIDKP-GGITIDDCVDVSREMNEILDREDYIDGT 75 Query: 90 YRLEVSSPGIDRPMVRKSDFLR 111 Y EVSSPG+ RP+ ++ DF R Sbjct: 76 YTFEVSSPGLGRPIRKERDFAR 97 >gi|239617902|ref|YP_002941224.1| protein of unknown function DUF150 [Kosmotoga olearia TBF 19.5.1] gi|239506733|gb|ACR80220.1| protein of unknown function DUF150 [Kosmotoga olearia TBF 19.5.1] Length = 167 Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 34/136 (25%), Positives = 68/136 (50%), Gaps = 8/136 (5%) Query: 13 PRIF-------GDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNM 64 P IF G L + + + V EE+ + +++ + + +L + ++++DG + Sbjct: 2 PSIFISMEVVDGMYELTEKLRKLAEEVAEELGYEIYKLTFGKGRRRAVLTVAIDKEDGYI 61 Query: 65 TLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS 124 ++ DCE S+A LD II Y L + SPG +R + + DF+R+ G V + Sbjct: 62 SISDCENFSRAFEKKLDETEIISSSYNLVIESPGAERELRKPGDFMRFTGKSVKIVLKEP 121 Query: 125 SGDKQKLIGKIMGTSE 140 ++ L+G+++ +E Sbjct: 122 LENRSVLVGQLINANE 137 >gi|294815428|ref|ZP_06774071.1| Conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|326443781|ref|ZP_08218515.1| ribosome maturation protein RimP [Streptomyces clavuligerus ATCC 27064] gi|294328027|gb|EFG09670.1| Conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] Length = 165 Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 6/95 (6%) Query: 53 LQIFVERDDGNMTLRDCEELSQAISPILDVENII-EGHYRLEVSSPGIDRPMVRKSDFLR 111 L+I V+ +DG TL C ELS+AIS LD + + E Y LEVSSPG DRP+ ++R Sbjct: 38 LRIVVDSEDG-ATLDACAELSRAISQKLDESDAMGEDEYVLEVSSPGADRPLTEHRHYVR 96 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE 146 G +V + D +L+ +++ + G LE Sbjct: 97 ATGRLVKLHL----ADGGELVARVLTVDDEGLDLE 127 >gi|170077375|ref|YP_001734013.1| hypothetical protein SYNPCC7002_A0752 [Synechococcus sp. PCC 7002] gi|169885044|gb|ACA98757.1| conserved hypothetical protein [Synechococcus sp. PCC 7002] Length = 166 Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 1/142 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I + +P+ E+ V + +K +L+I V + L DCE S+ + P L+ + Sbjct: 22 IVTCAEPIAAELGLEVVDVVFQTNKKPPVLRIDVRNLSQDTGLEDCERFSRLLDPQLEAQ 81 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 II G Y LEVSSPG DR + +F+ + G V + D+++ G + E Sbjct: 82 EIIPGAYVLEVSSPGTDRNLTTDREFIAFRGFPVRVKTYAPYKDQKEWCGTLRERDEAAI 141 Query: 144 FLEKEKRGEKDMNELQIAISFD 165 L + + EL + D Sbjct: 142 HLNLKGKAIAIPRELVAKVQLD 163 >gi|51246467|ref|YP_066351.1| hypothetical protein DP2615 [Desulfotalea psychrophila LSv54] gi|81641363|sp|Q6AJY2|RIMP_DESPS RecName: Full=Ribosome maturation factor rimP gi|50877504|emb|CAG37344.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54] Length = 151 Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 54/91 (59%), Gaps = 2/91 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I + V++ M V I E +L++F++ + G +TL C ++S+ + LDVE Sbjct: 9 IEGYVASVLQSMDVELVDIQFRCEGHGWVLRLFIDVE-GGVTLDLCAQVSREVGQYLDVE 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNG 114 ++IE Y LEVSSPG++RP+ ++F R+ G Sbjct: 68 DVIEQAYHLEVSSPGVERPLKSLANFERFAG 98 >gi|260881110|ref|ZP_05403661.2| hypothetical protein MITSMUL_03619 [Mitsuokella multacida DSM 20544] gi|260849563|gb|EEX69570.1| hypothetical protein MITSMUL_03619 [Mitsuokella multacida DSM 20544] Length = 211 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/142 (24%), Positives = 76/142 (53%), Gaps = 3/142 (2%) Query: 25 ISSVIQPVIEEMS-FRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +++Q ++++ V ++E + L+++++++ G + + DC+ LS+ + LD Sbjct: 71 VEAIVQELLKDQDVIELVDAEYVKEHDWYLRVYIDKE-GGIDIEDCQALSEKLEEALDKG 129 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +++ Y LEVSSPGIDR + + DF R G V + K+ ++G++ G Sbjct: 130 DVVPDSYILEVSSPGIDRVLRKPRDFTREQGKKVDVTLYAPREGKKLVVGELTGFDGDAI 189 Query: 144 FLEKEKRGE-KDMNELQIAISF 164 L+ E + D+ ++++ I F Sbjct: 190 ELDGETKIPLADIAQVRLHIDF 211 >gi|88705683|ref|ZP_01103393.1| conserved hypothetical protein [Congregibacter litoralis KT71] gi|88700196|gb|EAQ97305.1| conserved hypothetical protein [Congregibacter litoralis KT71] Length = 167 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 2/122 (1%) Query: 25 ISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +++ P +E + F L++ K+ +L++++E ++G + + DC +S+ + +LDVE Sbjct: 24 LQALLAPTVEALGFELWGTEYLIQGKHSVLRLYIESENG-VQVTDCAAVSEQVGALLDVE 82 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 I G Y LEVSSPG+DR + R + + G V + ++K G + G + Sbjct: 83 EPISGEYVLEVSSPGVDRRLFRLEQYPGYVGEEVELRLRSPFEGRRKFKGILRGVEDEDI 142 Query: 144 FL 145 L Sbjct: 143 VL 144 >gi|322382350|ref|ZP_08056257.1| hypothetical protein PL1_2630 [Paenibacillus larvae subsp. larvae B-3650] gi|321153703|gb|EFX46078.1| hypothetical protein PL1_2630 [Paenibacillus larvae subsp. larvae B-3650] Length = 153 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 79/159 (49%), Gaps = 17/159 (10%) Query: 25 ISSVIQPVIEEM--------SFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQA 75 +SS I+ ++EEM F V I ++E N L+++V++ +G + + DC +S+ Sbjct: 1 MSSSIKSIVEEMMKDYLTENGFELVDIEYVKEGSNWFLRVYVDKLEGGIDIEDCGRISEY 60 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LD ++ I Y LEVSSPG +RP+ + D + G V + ++ G++ Sbjct: 61 LSAKLDEKDPIPTAYFLEVSSPGAERPLKKPQDIAKSVGKHVFITTYEPVDNAKEFEGEL 120 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + ++ K+ + +I ++ + SARL + Sbjct: 121 LSFDGETLVVKTAKK--------KSSIPYEKVASARLAI 151 >gi|223044231|ref|ZP_03614268.1| 3-beta hydroxysteroid dehydrogenase/isomerase family protein [Staphylococcus capitis SK14] gi|222442381|gb|EEE48489.1| 3-beta hydroxysteroid dehydrogenase/isomerase family protein [Staphylococcus capitis SK14] Length = 155 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 82/154 (53%), Gaps = 18/154 (11%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++IQP+++++ F V+I ++E K+ L++ ++++ G + L DC S+ IS +D Sbjct: 8 VETIIQPILDDLKFELVEIEYVKEGKDRFLRVSIDKE-GGVDLNDCTLASEKISEAMDEN 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS-----SGDKQKLIGKIMGT 138 + I Y L+V+SPG +RP+ + DF + V+ I +S GDK+ L G + Sbjct: 67 DPIPEMYYLDVASPGAERPIKKDKDF----QNAVSQPIFVSLYAPIEGDKEWL-GILKSV 121 Query: 139 SETGFFLE-KEKRGEKDMNELQIAISFDSLLSAR 171 E +E KEK K +I I + + AR Sbjct: 122 DEDNIVMEVKEKSKTK-----EIEIPRNKIAKAR 150 >gi|169824467|ref|YP_001692078.1| hypothetical protein FMG_0770 [Finegoldia magna ATCC 29328] gi|303233823|ref|ZP_07320477.1| conserved hypothetical protein [Finegoldia magna BVS033A4] gi|226708072|sp|B0S1E8|RIMP_FINM2 RecName: Full=Ribosome maturation factor rimP gi|167831272|dbj|BAG08188.1| conserved hypothetical protein associated with Nus operon [Finegoldia magna ATCC 29328] gi|302495257|gb|EFL55009.1| conserved hypothetical protein [Finegoldia magna BVS033A4] Length = 154 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 3/124 (2%) Query: 29 IQPVIEE--MSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 + P+I++ + F V+ S KN+L ++E+DDG +++ DCE ++ IS LD + I Sbjct: 14 LSPLIKDTGIEFYDVEYSNNNGKNIL-TFYIEKDDGLISIDDCELINNKISDKLDEIDPI 72 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE 146 Y LE++S I P R DF + G+VV + K++ G + ++T LE Sbjct: 73 SDPYYLEIASVDITTPFTRDKDFKKNLGNVVIVNLYQKLDSKKEFKGILTDFNDTEISLE 132 Query: 147 KEKR 150 EK+ Sbjct: 133 LEKK 136 >gi|27467859|ref|NP_764496.1| hypothetical protein SE0941 [Staphylococcus epidermidis ATCC 12228] gi|57866747|ref|YP_188414.1| hypothetical protein SERP0832 [Staphylococcus epidermidis RP62A] gi|251810696|ref|ZP_04825169.1| protein of hypothetical function DUF150 [Staphylococcus epidermidis BCM-HMP0060] gi|282876303|ref|ZP_06285170.1| conserved hypothetical protein [Staphylococcus epidermidis SK135] gi|293366771|ref|ZP_06613447.1| conserved hypothetical protein [Staphylococcus epidermidis M23864:W2(grey)] gi|34222847|sp|Q8CST6|RIMP_STAES RecName: Full=Ribosome maturation factor rimP gi|81674897|sp|Q5HPS6|RIMP_STAEQ RecName: Full=Ribosome maturation factor rimP gi|27315404|gb|AAO04538.1|AE016747_35 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|57637405|gb|AAW54193.1| conserved hypothetical protein [Staphylococcus epidermidis RP62A] gi|251805856|gb|EES58513.1| protein of hypothetical function DUF150 [Staphylococcus epidermidis BCM-HMP0060] gi|281295328|gb|EFA87855.1| conserved hypothetical protein [Staphylococcus epidermidis SK135] gi|291319072|gb|EFE59442.1| conserved hypothetical protein [Staphylococcus epidermidis M23864:W2(grey)] gi|329736648|gb|EGG72914.1| hypothetical protein SEVCU045_1081 [Staphylococcus epidermidis VCU045] Length = 155 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 81/153 (52%), Gaps = 10/153 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++IQPV+ +++F V I ++E K+ L+I ++++ G + L DC S+ IS ++D Sbjct: 8 VEALIQPVLNDLNFELVDIEYVKEGKDHFLRISIDKE-GGVDLNDCTIASEKISEVMDEN 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRW-NGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 + I Y L+V+SPG +RP+ ++ DF N + GDK+ L G + ++ Sbjct: 67 DPIPEMYYLDVASPGAERPIKKEKDFYNAINQPIFVSLYAPIEGDKEWL-GVLKSVNDES 125 Query: 143 FFLE-KEKRGEKDMNELQIAISFDSLLSARLIV 174 +E KEK K +I I + + AR V Sbjct: 126 INMEVKEKAKTK-----EIEIPRNKIAKARHAV 153 >gi|299067339|emb|CBJ38536.1| conserved protein of unknown function [Ralstonia solanacearum CMR15] Length = 149 Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 52/88 (59%), Gaps = 2/88 (2%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 LL++++++ + + + DCE++S ++ + +VEN+ + RLEVSSPG+DRP+ DF R Sbjct: 15 LLRVYIDQAETGIVIEDCEKVSHQLTRVFEVENV--NYERLEVSSPGLDRPLRTLVDFTR 72 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTS 139 + G V + L ++ G + + Sbjct: 73 FAGLEVKVTLRLPVNGQKNFTGIVQAPA 100 >gi|124267112|ref|YP_001021116.1| hypothetical protein Mpe_A1923 [Methylibium petroleiphilum PM1] gi|226732163|sp|A2SH42|RIMP_METPP RecName: Full=Ribosome maturation factor rimP gi|124259887|gb|ABM94881.1| conserved hypothetical protein [Methylibium petroleiphilum PM1] Length = 177 Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 57/99 (57%), Gaps = 11/99 (11%) Query: 52 LLQIFVERDDGNM---------TLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRP 102 LL++F++R G + T+ DCE++++ + +L+VEN + RLEVSSPG+DRP Sbjct: 28 LLRVFIDRVPGQVYDGGPGEFVTVEDCEKVTRQLQYVLEVENC--DYSRLEVSSPGLDRP 85 Query: 103 MVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + + +D+ R+ G + + L ++K G + + E Sbjct: 86 LKKSADYARFAGERIDITLKLPFQGRKKYQGVLAASGEA 124 >gi|260889855|ref|ZP_05901118.1| UPF0090 protein [Leptotrichia hofstadii F0254] gi|260860461|gb|EEX74961.1| UPF0090 protein [Leptotrichia hofstadii F0254] Length = 162 Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 2/93 (2%) Query: 53 LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRW 112 L+++VE+ DG TL DC + S+ I I D ++IE + LEVS+PG++R + + DF+R+ Sbjct: 37 LRVYVEKLDGTTTLDDCIDFSREIDGIAD--DLIEEKFFLEVSTPGVERRLRKPKDFVRF 94 Query: 113 NGHVVACEIVLSSGDKQKLIGKIMGTSETGFFL 145 G + + + +K IGK+ FL Sbjct: 95 LGERINVQAKSNIEGAKKFIGKLEKFENDTVFL 127 >gi|329724310|gb|EGG60822.1| hypothetical protein SEVCU144_1771 [Staphylococcus epidermidis VCU144] Length = 155 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 80/153 (52%), Gaps = 10/153 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++IQPV+ +++F V I ++E K+ L+I ++++ G + L DC S+ IS ++D Sbjct: 8 VEALIQPVLNDLNFELVDIEYVKEGKDHFLRISIDKE-GGVDLNDCTIASEKISEVMDKN 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRW-NGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 + I Y L+V+SPG +RP+ + DF N + GDK+ L G + ++ Sbjct: 67 DPIPEMYYLDVASPGAERPIKKDKDFYNAINQPIFVSLYAPIEGDKEWL-GVLKSVNDES 125 Query: 143 FFLE-KEKRGEKDMNELQIAISFDSLLSARLIV 174 +E KEK K +I I + + AR V Sbjct: 126 INMEVKEKAKTK-----EIEIPRNKIAKARHAV 153 >gi|222823265|ref|YP_002574838.1| conserved hypothetical protein (DUF150 domain protein) [Campylobacter lari RM2100] gi|254801701|sp|B9KEV2|RIMP_CAMLR RecName: Full=Ribosome maturation factor rimP gi|222538486|gb|ACM63587.1| conserved hypothetical protein (DUF150 domain protein) [Campylobacter lari RM2100] Length = 140 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 11/123 (8%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 + +++V+++ G + L DC LS+ +SPI DVE + G Y LEVSS G++R + + F + Sbjct: 27 IYRVYVQKE-GGVKLDDCARLSEILSPIFDVEPPVSGEYFLEVSSCGLERKLSKIEHFAK 85 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 +V +++ +K+K+ KI+ + LE K EK + F + AR Sbjct: 86 SINELVK----ITTSEKEKIEAKIVSVDDENITLENLKTQEK------TTLKFSDIRKAR 135 Query: 172 LIV 174 V Sbjct: 136 TFV 138 >gi|259645133|sp|B1XI06|RIMP_SYNP2 RecName: Full=Ribosome maturation factor rimP Length = 153 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 1/142 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I + +P+ E+ V + +K +L+I V + L DCE S+ + P L+ + Sbjct: 9 IVTCAEPIAAELGLEVVDVVFQTNKKPPVLRIDVRNLSQDTGLEDCERFSRLLDPQLEAQ 68 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 II G Y LEVSSPG DR + +F+ + G V + D+++ G + E Sbjct: 69 EIIPGAYVLEVSSPGTDRNLTTDREFIAFRGFPVRVKTYAPYKDQKEWCGTLRERDEAAI 128 Query: 144 FLEKEKRGEKDMNELQIAISFD 165 L + + EL + D Sbjct: 129 HLNLKGKAIAIPRELVAKVQLD 150 >gi|226949775|ref|YP_002804866.1| hypothetical protein CLM_2715 [Clostridium botulinum A2 str. Kyoto] gi|254801446|sp|C1FS63|RIMP_CLOBJ RecName: Full=Ribosome maturation factor rimP gi|226844311|gb|ACO86977.1| conserved hypothetical protein [Clostridium botulinum A2 str. Kyoto] Length = 153 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 68/123 (55%), Gaps = 2/123 (1%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 L ++ I+P+ E + + I ++E K L+I+++ ++G ++L CE++S+AIS Sbjct: 5 SLIENLKKQIEPIAEGLDYELYHIEFVKEGKENYLRIYIDSENG-VSLEGCEKVSRAISE 63 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LD + I+ Y LEVSSPGIDR + ++ + + + K+K G+++ Sbjct: 64 LLDDIDPIQESYYLEVSSPGIDRVLYTDKHLEKYKSYNIVLNLYSPIDKKKKYEGELVDF 123 Query: 139 SET 141 +E Sbjct: 124 NEN 126 >gi|254382095|ref|ZP_04997457.1| conserved hypothetical protein [Streptomyces sp. Mg1] gi|194341002|gb|EDX21968.1| conserved hypothetical protein [Streptomyces sp. Mg1] Length = 170 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 43/128 (33%), Positives = 69/128 (53%), Gaps = 9/128 (7%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII-EGHYRLEVSSPGIDRPMVRKS 107 K +L++ V+ D+G + L C ELS+ IS LD +++ E Y LEVSSPG DRP+ Sbjct: 34 KRRMLRVIVDSDEG-VELDTCAELSREISDQLDESDVMGEDEYVLEVSSPGADRPLTEHR 92 Query: 108 DFLRWNGHVVACEIVLSSGDKQ---KLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISF 164 ++R G +V + L++GD + +L+ +I+ + G LE G K I+F Sbjct: 93 HYVRALGRLVKFQ--LTAGDDKGAGELVARILDVDDEGMDLEVP--GVKGRKATARRIAF 148 Query: 165 DSLLSARL 172 + AR+ Sbjct: 149 TDIAKARV 156 >gi|90409005|ref|ZP_01217135.1| hypothetical protein PCNPT3_10746 [Psychromonas sp. CNPT3] gi|90309890|gb|EAS38045.1| hypothetical protein PCNPT3_10746 [Psychromonas sp. CNPT3] Length = 152 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 30/112 (26%), Positives = 66/112 (58%), Gaps = 2/112 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ + P +E++ + V I K+ +L+++++++ G + + DC +S+ IS ++DVE Sbjct: 8 LTDMFTPSVEDLGYELVGIEYTRAGKHSILRVYIDQEAG-ILVDDCAAVSRQISALMDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 + I Y LEVSSPG++RP+ + + + G V ++ + ++++ G I Sbjct: 67 DPITNEYTLEVSSPGLERPLFSATHYQAFVGSKVKIQLRMPIQNRRRWKGMI 118 >gi|91792365|ref|YP_562016.1| hypothetical protein Sden_1005 [Shewanella denitrificans OS217] gi|123166362|sp|Q12QI3|RIMP_SHEDO RecName: Full=Ribosome maturation factor rimP gi|91714367|gb|ABE54293.1| protein of unknown function DUF150 [Shewanella denitrificans OS217] Length = 151 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 51/87 (58%), Gaps = 1/87 (1%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSD 108 ++ ++++F++ + G + + DC E S+ +S +LDVE+ I Y LEVSSPG+DRP+ + Sbjct: 33 RHSIVRVFIDSEKG-IFIEDCAETSRQVSAVLDVEDPITTEYTLEVSSPGVDRPLFTAAQ 91 Query: 109 FLRWNGHVVACEIVLSSGDKQKLIGKI 135 + + G ++ + + L G I Sbjct: 92 YQAYIGEDAKVQLTMPVAGSRNLKGVI 118 >gi|237752794|ref|ZP_04583274.1| conserved hypothetical protein [Helicobacter winghamensis ATCC BAA-430] gi|229376283|gb|EEO26374.1| conserved hypothetical protein [Helicobacter winghamensis ATCC BAA-430] Length = 150 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 74/131 (56%), Gaps = 3/131 (2%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQI-SLLEEKNLLLQIFVERD--DGNMTLRDCEELSQA 75 M ++ ++ I+ ++E + F + +L E +N +L+I + ++ +++L DC+E+S A Sbjct: 1 MTISPNLEDKIKVLVESLGFDLYDVLTLKENENQILRICITKNMESKSVSLDDCQEVSLA 60 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +SP+LDVE Y LEVSSPGI+R + + + ++ + + K++ GK+ Sbjct: 61 LSPLLDVEMPDFEKYYLEVSSPGIERVLKTLAHYKGAINELIKVKTLQEIAGKKEFKGKL 120 Query: 136 MGTSETGFFLE 146 + SE+ LE Sbjct: 121 VSVSESVLVLE 131 >gi|242242548|ref|ZP_04796993.1| protein of hypothetical function DUF150 [Staphylococcus epidermidis W23144] gi|242233975|gb|EES36287.1| protein of hypothetical function DUF150 [Staphylococcus epidermidis W23144] gi|319401445|gb|EFV89655.1| conserved hypothetical protein [Staphylococcus epidermidis FRI909] Length = 155 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 80/153 (52%), Gaps = 10/153 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++IQPV+ ++ F V I ++E K+ L+I ++++ G + L DC S+ IS ++D Sbjct: 8 VEALIQPVLNDLDFELVDIEYVKEGKDHFLRISIDKE-GGVDLNDCTLASEKISEVMDEN 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRW-NGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 + I Y L+V+SPG +RP+ ++ DF N + GDK+ L G + ++ Sbjct: 67 DPIPEMYYLDVASPGAERPIKKEKDFYNAINQPIFVSLYAPIEGDKEWL-GILKSVNDES 125 Query: 143 FFLE-KEKRGEKDMNELQIAISFDSLLSARLIV 174 +E KEK K +I I + + AR V Sbjct: 126 INMEVKEKAKTK-----EIEIPRNKIAKARHAV 153 >gi|187251075|ref|YP_001875557.1| hypothetical protein Emin_0665 [Elusimicrobium minutum Pei191] gi|259585767|sp|B2KC93|RIMP_ELUMP RecName: Full=Ribosome maturation factor rimP gi|186971235|gb|ACC98220.1| Uncharacterized protein conserved in bacteria [Elusimicrobium minutum Pei191] Length = 152 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 L Q FV+++ G + L D E+ S+ I I+++EN+IEG Y LE SSPGI R + + F + Sbjct: 35 LFQFFVDKE-GGINLDDVEKASRLIDSIIEMENLIEGAYILEASSPGIKRVLKKPEHFKK 93 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + G + ++ G I G +ET Sbjct: 94 FIGQRAKITLKQMIENRANFTGLIAGANET 123 >gi|148380377|ref|YP_001254918.1| hypothetical protein CBO2421 [Clostridium botulinum A str. ATCC 3502] gi|153933725|ref|YP_001384597.1| hypothetical protein CLB_2286 [Clostridium botulinum A str. ATCC 19397] gi|153935745|ref|YP_001388113.1| hypothetical protein CLC_2269 [Clostridium botulinum A str. Hall] gi|166987426|sp|A7FVZ7|RIMP_CLOB1 RecName: Full=Ribosome maturation factor rimP gi|166987470|sp|A5I4J7|RIMP_CLOBH RecName: Full=Ribosome maturation factor rimP gi|148289861|emb|CAL83969.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 3502] gi|152929769|gb|ABS35269.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 19397] gi|152931659|gb|ABS37158.1| conserved hypothetical protein [Clostridium botulinum A str. Hall] Length = 153 Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 68/123 (55%), Gaps = 2/123 (1%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 L ++ I+P+ E + + I ++E K L+I+++ ++G ++L CE++S+AIS Sbjct: 5 SLIENLKEQIEPIAEGLDYELYHIEFVKEGKENYLRIYIDSENG-VSLEGCEKVSRAISE 63 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LD + I+ Y LEVSSPGIDR + ++ + + + K+K G+++ Sbjct: 64 LLDDIDPIQESYYLEVSSPGIDRVLYTDKHLEKYKSYNIVLNLYSPIDKKKKYEGELVDF 123 Query: 139 SET 141 +E Sbjct: 124 NEN 126 >gi|291613947|ref|YP_003524104.1| hypothetical protein Slit_1480 [Sideroxydans lithotrophicus ES-1] gi|291584059|gb|ADE11717.1| protein of unknown function DUF150 [Sideroxydans lithotrophicus ES-1] Length = 141 Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 38/150 (25%), Positives = 81/150 (54%), Gaps = 13/150 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 D++ +++ + M + V + + L+++F+++ DG +++ DCE +S + + VE Sbjct: 2 DVAKLVETTLAGMGYELVDLEV--SGRGLMRVFMDKPDG-ISVEDCERVSNQLVRLFTVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + + RLEVSSPG+DR + ++SDF+R+ G ++ + ++ G I+G + G Sbjct: 59 GV--EYERLEVSSPGLDRVLKKESDFVRFAGQKAQIKVRVPLAGRKNFAG-IIGEVKDGV 115 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + D++ +AI ++ ARL+ Sbjct: 116 V-------QLDVDGSLVAIELSNMDKARLV 138 >gi|271963646|ref|YP_003337842.1| hypothetical protein Sros_2114 [Streptosporangium roseum DSM 43021] gi|270506821|gb|ACZ85099.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021] Length = 166 Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 67/122 (54%), Gaps = 9/122 (7%) Query: 28 VIQPVI--EEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENI 85 +++PV+ E + V ++ K LL++ V+RD G ++L D E+S A+S LD ++ Sbjct: 13 LLEPVVGAEGLDLEDVTVTP-AGKRRLLRVVVDRD-GGVSLDDVAEVSLAVSATLDADDA 70 Query: 86 IEGH-YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 + Y LEVSSPG+DRP+ + R +V ++ D + G+I+ T ETG Sbjct: 71 MGATPYVLEVSSPGVDRPLTEPRHWRRAVKRLVKADL----RDGTSVEGRIVATDETGVE 126 Query: 145 LE 146 L+ Sbjct: 127 LD 128 >gi|302542144|ref|ZP_07294486.1| conserved hypothetical protein [Streptomyces hygroscopicus ATCC 53653] gi|302459762|gb|EFL22855.1| conserved hypothetical protein [Streptomyces himastatinicus ATCC 53653] Length = 168 Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 35/99 (35%), Positives = 58/99 (58%), Gaps = 6/99 (6%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII-EGHYRLEVSSPGIDRPMVRKS 107 K +L+I V+ DDG + L C ELS+AIS LD + + + Y LEV+SPG +RP++ + Sbjct: 34 KRRVLRIVVDSDDG-VQLDTCAELSRAISQALDESDAMGQTPYVLEVTSPGAERPLIEQR 92 Query: 108 DFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE 146 + R G ++ ++V + +LI +I+ + G LE Sbjct: 93 HYRRATGRLMKAQLV----EGGELIARIIAVDDEGLDLE 127 >gi|88597399|ref|ZP_01100634.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni 84-25] gi|88190460|gb|EAQ94434.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni 84-25] Length = 147 Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 10/111 (9%) Query: 64 MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVL 123 + L DC LS+ +SPI DVE + G Y LEVSS G++R + + F + +V + Sbjct: 45 VNLDDCARLSEILSPIFDVEPPVSGEYFLEVSSAGLERKLSKIEHFAKSINELVK----I 100 Query: 124 SSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++G+K+K+ KI+ + LE + EK I+F+ + AR + Sbjct: 101 TTGEKEKIEAKIISVEDENITLENLENKEK------TTINFNDIKKARTFI 145 >gi|297180948|gb|ADI17151.1| uncharacterized protein conserved in bacteria [uncultured gamma proteobacterium HF0070_08D07] Length = 152 Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 81/152 (53%), Gaps = 11/152 (7%) Query: 24 DISSVIQPVIEEMSFR--SVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 +I S++ P IE + R V++ + NL + ++++ +DG +++ DC +S+ +S ILD Sbjct: 7 NIESLVAPTIEALGCRIWGVELQGGLKNNLKVVVYIDSEDG-ISVDDCATVSEHVSDILD 65 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 +E ++ Y LEVSSPG+DR + ++ F G + + ++KL G ++ + Sbjct: 66 MEELVPSPYVLEVSSPGLDRILFKEQHFKESLGLKIDVRLNRPFEGRKKLTGVLLDYGDL 125 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L ++K G ++ I D++ RL+ Sbjct: 126 ELIL-RDKMGVRN-------IPVDAIRKVRLV 149 >gi|217964532|ref|YP_002350210.1| hypothetical protein LMHCC_1249 [Listeria monocytogenes HCC23] gi|290893568|ref|ZP_06556551.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|254800006|sp|B8DG06|RIMP_LISMH RecName: Full=Ribosome maturation factor rimP gi|217333802|gb|ACK39596.1| conserved hypothetical protein [Listeria monocytogenes HCC23] gi|290556913|gb|EFD90444.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|307570902|emb|CAR84081.1| conserved hypothetical protein [Listeria monocytogenes L99] gi|313608988|gb|EFR84730.1| conserved hypothetical protein [Listeria monocytogenes FSL F2-208] Length = 155 Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 53/86 (61%), Gaps = 2/86 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +++ P+ +E+ V I +E N L+IF+++D G + + +C +S+ +S +D Sbjct: 8 VEAIVAPITDELQLELVDIVFEKEGPNWFLRIFIDKD-GGVDIDECAAVSEKVSEKMDEN 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDF 109 + I +Y LEVSSPG +RP+ ++ DF Sbjct: 67 DPITQNYFLEVSSPGAERPLKKEQDF 92 >gi|253573563|ref|ZP_04850906.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251847091|gb|EES75096.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 153 Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 75/155 (48%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + ++ P +EE F V + ++E N L++FV+++ G + + DC +S+ +S Sbjct: 6 IKATVEQMVTPYLEENGFELVDVEYVKEGSNWFLRVFVDKE-GGIDIDDCGRISEYLSEK 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + I Y LEVSSPG +RP+ + D + G V ++ G+++ Sbjct: 65 LDENDPIPSAYFLEVSSPGAERPLKKAEDVSKAVGKDVFVTTYEPVDGLKEFEGRLLSFD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E K+ + AI ++ + SARL + Sbjct: 125 GDELVVEVGKK--------RHAIPYNKVASARLAI 151 >gi|253681731|ref|ZP_04862528.1| conserved hypothetical protein [Clostridium botulinum D str. 1873] gi|253561443|gb|EES90895.1| conserved hypothetical protein [Clostridium botulinum D str. 1873] Length = 154 Score = 57.4 bits (137), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 73/126 (57%), Gaps = 4/126 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I+ +++P++E +++ I + E+N L+I+++ G + L DCE++S+ +S +LD + Sbjct: 11 INELVRPIVEGLNYELYYIEYVREQNENYLRIYIDSSKG-INLEDCEKVSRKVSDMLDEK 69 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRW-NGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 + IE Y LEVSSPGI+R + ++ N +V L G ++ GK++ ++ Sbjct: 70 DPIEDGYYLEVSSPGIERVLHTDEHLHKYINNQIVIKLAKLFEGSREHQ-GKLLNFNDES 128 Query: 143 FFLEKE 148 ++K+ Sbjct: 129 ITIQKD 134 >gi|17546006|ref|NP_519408.1| hypothetical protein RSc1287 [Ralstonia solanacearum GMI1000] gi|34222937|sp|Q8XZV8|RIMP_RALSO RecName: Full=Ribosome maturation factor rimP gi|17428301|emb|CAD14989.1| conserved hypothetical protein [Ralstonia solanacearum GMI1000] Length = 162 Score = 57.4 bits (137), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 62/115 (53%), Gaps = 4/115 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I+ + M + V++ LL++++++ + + + DCE++S ++ + +VEN Sbjct: 3 LTDLIEKTLTAMGYELVEVERAPAG--LLRVYIDQAETGIVIEDCEKVSHQLTRVFEVEN 60 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 + + RLEVSSPG+DRP+ DF R+ G + L ++ G + + Sbjct: 61 V--NYERLEVSSPGLDRPLRTLVDFARFAGLEAKVTLRLPVNGQKNFTGIVQAPA 113 >gi|306820435|ref|ZP_07454071.1| protein of hypothetical function DUF150 [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551510|gb|EFM39465.1| protein of hypothetical function DUF150 [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 153 Score = 57.4 bits (137), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 70/129 (54%), Gaps = 14/129 (10%) Query: 25 ISSVIQPVIEEMSFRS-------VQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAI 76 +S I+ + EE+ R V + ++E + L+I +++D G+MT+ DC +LS I Sbjct: 1 MSKKIEQITEELVLRVLPEEYEMVDVEYVKEAGEMYLRILIDKD-GSMTIDDCVKLSGII 59 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK---QKLIG 133 +D ++ I+ Y LE+SSPG+DR + + DF+R G V E+ L D+ ++ + Sbjct: 60 GDEIDKKDYIKDAYNLEISSPGLDRTLKKDRDFVREKGKDV--EVKLFKKDEKYGKEFVA 117 Query: 134 KIMGTSETG 142 + G E G Sbjct: 118 VLEGLDENG 126 >gi|167625061|ref|YP_001675355.1| hypothetical protein Shal_3149 [Shewanella halifaxensis HAW-EB4] gi|189039835|sp|B0TQA4|RIMP_SHEHH RecName: Full=Ribosome maturation factor rimP gi|167355083|gb|ABZ77696.1| protein of unknown function DUF150 [Shewanella halifaxensis HAW-EB4] Length = 151 Score = 57.4 bits (137), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 51/89 (57%), Gaps = 1/89 (1%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSD 108 K+ +L+++++ + G + + DC E S+ +S +LDVE+ I Y LEVSSPG++R + Sbjct: 33 KHSILRLYIDNEKG-IFIEDCAEASRQVSAVLDVEDPITSEYTLEVSSPGVERLLFTAEQ 91 Query: 109 FLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 + + G V ++ + + L G + G Sbjct: 92 YKAYIGETVKVQLTMPVAGSRNLKGTVTG 120 >gi|289646959|ref|ZP_06478302.1| hypothetical protein Psyrpa2_04287 [Pseudomonas syringae pv. aesculi str. 2250] Length = 152 Score = 57.4 bits (137), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 58/98 (59%), Gaps = 2/98 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + V+ PV+ + ++ I + K+ +L+I+++++ G + + DC +S+ IS +LDVE Sbjct: 8 LQDVLAPVVVALGYQCWGIDFSSQGKHSVLRIYIDKE-GGVLVDDCAIVSRQISGVLDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 + I Y LEVSSPG++RP+ F + G V ++ Sbjct: 67 DPISTEYTLEVSSPGMERPLFTIEQFASYAGEQVKIKL 104 >gi|310641592|ref|YP_003946350.1| ribosome maturation factor rimp [Paenibacillus polymyxa SC2] gi|309246542|gb|ADO56109.1| Ribosome maturation factor rimP [Paenibacillus polymyxa SC2] Length = 153 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 2/94 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + + QP ++E F V + ++E N L++FV++D G + L DC +S+ + LD Sbjct: 10 VEEMAQPYLDEHGFELVDVEYVKEGSNWFLRVFVDKD-GGIDLDDCSMISEYLGQKLDEN 68 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + + Y LEVSSPG +RP+ + D + G V Sbjct: 69 DPVSTAYFLEVSSPGAERPLKKAEDVTKAVGKNV 102 >gi|300721536|ref|YP_003710811.1| hypothetical protein XNC1_0503 [Xenorhabdus nematophila ATCC 19061] gi|297628028|emb|CBJ88577.1| conserved hypothetical protein [Xenorhabdus nematophila ATCC 19061] Length = 140 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/108 (26%), Positives = 63/108 (58%), Gaps = 1/108 (0%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I +E + F V + + + L+++++ ++G +T+ +C ++S +S +LDVE+ I Sbjct: 1 MISAPVEALGFELVGLEFIRARVSTLRVYIDSEEG-ITVDNCADVSHQVSAVLDVEDPIS 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 Y LE+SSPG++RP+ + R+ G V + ++ ++++ G I Sbjct: 60 VLYNLEISSPGLERPLFTAEHYQRFIGEEVNVVLRMAMQNRRRWQGII 107 >gi|294339929|emb|CAZ88292.1| conserved hypothetical protein [Thiomonas sp. 3As] Length = 191 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 56/84 (66%), Gaps = 6/84 (7%) Query: 35 EMSFRSVQISLLEEKNL---LLQIFVERDDG-NMTLRDCEELSQAISPILDVENIIEGHY 90 + + S+ + L+E ++L LL++ ++ DG +T+ DCE +++ + + +VEN+ G Sbjct: 8 DTAVTSLGLELVEVEHLPRGLLRVTIDHADGAPVTVEDCERVTRQLQYVFEVENVDYG-- 65 Query: 91 RLEVSSPGIDRPMVRKSDFLRWNG 114 RLEVSSPG+DRP+ + DF+R+ G Sbjct: 66 RLEVSSPGLDRPLRKSEDFVRFAG 89 >gi|308068696|ref|YP_003870301.1| hypothetical protein PPE_01927 [Paenibacillus polymyxa E681] gi|305857975|gb|ADM69763.1| Conserved hypothetical protein [Paenibacillus polymyxa E681] Length = 153 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 2/94 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + + QP ++E F V + ++E N L++FV++D G + L DC +S+ + LD Sbjct: 10 VEEMAQPYLDEHGFELVDVEYVKEGSNWFLRVFVDKD-GGIDLDDCSMISEYLGQKLDEN 68 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + + Y LEVSSPG +RP+ + D + G V Sbjct: 69 DPVSTAYFLEVSSPGAERPLKKAEDVTKAVGKNV 102 >gi|329120393|ref|ZP_08249060.1| protein of hypothetical function DUF150 [Neisseria bacilliformis ATCC BAA-1200] gi|327462348|gb|EGF08674.1| protein of hypothetical function DUF150 [Neisseria bacilliformis ATCC BAA-1200] Length = 192 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 51/83 (61%), Gaps = 3/83 (3%) Query: 53 LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRW 112 L++F++++ G +T+ DC +S +S + VE++ + LE+SSPG+DRP+ + +DF R+ Sbjct: 78 LRVFIDKE-GGITIDDCAAVSNHLSRLFTVEDV--DYKNLEISSPGLDRPLKKAADFARF 134 Query: 113 NGHVVACEIVLSSGDKQKLIGKI 135 G + L ++ IG+I Sbjct: 135 AGQEAKIKTRLPVDGQKNFIGRI 157 >gi|331269631|ref|YP_004396123.1| hypothetical protein CbC4_1447 [Clostridium botulinum BKT015925] gi|329126181|gb|AEB76126.1| Hypothetical UPF0090 protein [Clostridium botulinum BKT015925] Length = 154 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 73/126 (57%), Gaps = 4/126 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I+ +++P++E +++ I + E+N L+I+++ G + L DC+++S+ +S +LD + Sbjct: 11 INELVRPIVEGLNYELYYIEYVREQNENYLRIYIDSSKG-INLEDCQKVSRKVSDMLDEK 69 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRW-NGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 + IE Y LEVSSPGI+R + ++ N +V L G ++ GK++ ++ Sbjct: 70 DPIEDGYYLEVSSPGIERILHTDEHLHKYINNQIVIKLAKLFEGSREHQ-GKLLSFNDES 128 Query: 143 FFLEKE 148 +EK+ Sbjct: 129 ITMEKD 134 >gi|116492652|ref|YP_804387.1| hypothetical protein PEPE_0886 [Pediococcus pentosaceus ATCC 25745] gi|122265884|sp|Q03FS7|RIMP_PEDPA RecName: Full=Ribosome maturation factor rimP gi|116102802|gb|ABJ67945.1| hypothetical protein PEPE_0886 [Pediococcus pentosaceus ATCC 25745] Length = 158 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 83/157 (52%), Gaps = 16/157 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ ++QP+ + +F V++ ++E + L++++++ G + + +C +S +S ILD + Sbjct: 9 VTELVQPITDRHNFELVEVEFVKEGQGWFLRVYIDKV-GGINIEECAMVSDELSEILDAQ 67 Query: 84 NI--IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + I Y LEVSSPG +RP+ K D R G + + +S +KQK+ + + E Sbjct: 68 DPDPIPQAYFLEVSSPGAERPLKTKEDLTRSIGEYIHISL-YASINKQKVFEGYLKSFEN 126 Query: 142 GF----FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +L+K + E + +++D + ARL + Sbjct: 127 DEIVLDYLDKTRHKE-------LKVTYDQVAFARLAI 156 >gi|107022572|ref|YP_620899.1| hypothetical protein Bcen_1018 [Burkholderia cenocepacia AU 1054] gi|116689520|ref|YP_835143.1| hypothetical protein Bcen2424_1498 [Burkholderia cenocepacia HI2424] gi|170732824|ref|YP_001764771.1| hypothetical protein Bcenmc03_1474 [Burkholderia cenocepacia MC0-3] gi|254245587|ref|ZP_04938908.1| hypothetical protein BCPG_00296 [Burkholderia cenocepacia PC184] gi|122978973|sp|Q1BWS9|RIMP_BURCA RecName: Full=Ribosome maturation factor rimP gi|166979874|sp|A0K6X3|RIMP_BURCH RecName: Full=Ribosome maturation factor rimP gi|226734185|sp|B1K0L8|RIMP_BURCC RecName: Full=Ribosome maturation factor rimP gi|105892761|gb|ABF75926.1| protein of unknown function DUF150 [Burkholderia cenocepacia AU 1054] gi|116647609|gb|ABK08250.1| protein of unknown function DUF150 [Burkholderia cenocepacia HI2424] gi|124870363|gb|EAY62079.1| hypothetical protein BCPG_00296 [Burkholderia cenocepacia PC184] gi|169816066|gb|ACA90649.1| protein of unknown function DUF150 [Burkholderia cenocepacia MC0-3] Length = 152 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 70/123 (56%), Gaps = 8/123 (6%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 +L I++++ G ++L DCE++++ + +L VENI + RLEVSSPG+DRP+ + +DF R Sbjct: 28 MLCIYIDQPAG-ISLEDCEKVTRQLQHVLTVENI--DYERLEVSSPGLDRPLKKLADFER 84 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKE-KRGEKDMNELQIAISFDSLLSA 170 + G V+ + ++ G + + LE E K+GE M + +A + A Sbjct: 85 FAGSEVSVTLKKPLDGRKTYRGILHAPNGETIGLEFEGKKGEAAMLDFTLA----DIDKA 140 Query: 171 RLI 173 RLI Sbjct: 141 RLI 143 >gi|296135766|ref|YP_003643008.1| protein of unknown function DUF150 [Thiomonas intermedia K12] gi|295795888|gb|ADG30678.1| protein of unknown function DUF150 [Thiomonas intermedia K12] Length = 191 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 56/84 (66%), Gaps = 6/84 (7%) Query: 35 EMSFRSVQISLLEEKNL---LLQIFVERDDG-NMTLRDCEELSQAISPILDVENIIEGHY 90 + + S+ + L+E ++L LL++ ++ DG +T+ DCE +++ + + +VEN+ G Sbjct: 8 DTAVTSLGLELVEVEHLPRGLLRVTIDHADGAPVTVEDCERVTRQLQYVFEVENVDYG-- 65 Query: 91 RLEVSSPGIDRPMVRKSDFLRWNG 114 RLEVSSPG+DRP+ + DF+R+ G Sbjct: 66 RLEVSSPGLDRPLRKAEDFVRFAG 89 >gi|157803621|ref|YP_001492170.1| hypothetical protein A1E_02200 [Rickettsia canadensis str. McKiel] gi|166987409|sp|A8EYF2|RIMP_RICCK RecName: Full=Ribosome maturation factor rimP gi|157784884|gb|ABV73385.1| hypothetical protein A1E_02200 [Rickettsia canadensis str. McKiel] Length = 125 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 65/113 (57%), Gaps = 1/113 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVER-DDGNMTLRDCEELSQAISPILDVE 83 I++VI+ + +M F V + + +++I ++ + +++ DC ++S+ I ILDVE Sbjct: 8 ITNVIEESLIDMGFELVLVKFKGVNSKVVEILIDSLNSEKVSVEDCTKVSRTIPAILDVE 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 N+IE LEV+S G++RP+V+ ++ R+ G V + DK GKI+ Sbjct: 68 NLIEDASSLEVASSGLERPLVKFENYNRFLGREVKITLKELLNDKTSYQGKII 120 >gi|187931004|ref|YP_001890988.1| protein Lpl2691 [Francisella tularensis subsp. mediasiatica FSC147] gi|226696222|sp|B2SEW5|RIMP_FRATM RecName: Full=Ribosome maturation factor rimP gi|187711913|gb|ACD30210.1| protein Lpl2691 [Francisella tularensis subsp. mediasiatica FSC147] Length = 150 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 77/142 (54%), Gaps = 5/142 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L D+ +++P+ ++ + I ++ L ++IF++ ++G +++ DC+ +S+ IS + Sbjct: 2 LLDDLYEIVEPITADLGYILWGIEVVGSGKLTIRIFIDHENG-VSVDDCQIVSKEISAVF 60 Query: 81 DVENIIEGHYRLEVSSPGIDRP---MVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 DVE+ + G Y LEVSSPG++R +++ + +N V V S + ++ ++ G Sbjct: 61 DVEDPVSGKYILEVSSPGMNRQIFNIIQAQALVGFNVKAVTLAPVGSQTKFKGVLERVEG 120 Query: 138 TSETGFFLEKEKRGEKDMNELQ 159 S LE K D +EL+ Sbjct: 121 NSVI-LNLEDGKEISFDFDELK 141 >gi|78066109|ref|YP_368878.1| hypothetical protein Bcep18194_A4639 [Burkholderia sp. 383] gi|91208362|sp|Q39H32|RIMP_BURS3 RecName: Full=Ribosome maturation factor rimP gi|77966854|gb|ABB08234.1| protein of unknown function DUF150 [Burkholderia sp. 383] Length = 152 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 70/123 (56%), Gaps = 8/123 (6%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 +L I++++ G ++L DCE++++ + +L VENI + RLEVSSPG+DRP+ + +DF R Sbjct: 28 MLCIYIDQPAG-ISLEDCEKVTRQLQHVLTVENI--DYERLEVSSPGLDRPLKKLADFER 84 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKE-KRGEKDMNELQIAISFDSLLSA 170 + G V+ + ++ G + + LE E K+GE M + +A + A Sbjct: 85 FAGSEVSVTLKKPLDGRKTYRGILHAPNGETIGLEFEGKKGEAAMLDFTLA----DIDKA 140 Query: 171 RLI 173 RLI Sbjct: 141 RLI 143 >gi|257784635|ref|YP_003179852.1| hypothetical protein Apar_0832 [Atopobium parvulum DSM 20469] gi|257473142|gb|ACV51261.1| protein of unknown function DUF150 [Atopobium parvulum DSM 20469] Length = 164 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 68/130 (52%), Gaps = 8/130 (6%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQA---ISPILDVENIIEGHYRLEVSSPGIDRPMVR 105 KN L+++ ++ DD +E++Q IS +D + + LEVSSPG+ RP+ R Sbjct: 35 KNPLVRVRIDHDDETEETISLDEVAQETSWISETIDELDPFPASFTLEVSSPGMARPLRR 94 Query: 106 KSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKR-GEKDMNELQ---IA 161 DF+R+ G V + + G ++K G ++G T ++ E D++EL+ I Sbjct: 95 AKDFVRFAGQEVQLQTTATEG-RRKFTGTLLGIEGTTISIQTEDEVCTIDLSELKKCVIK 153 Query: 162 ISFDSLLSAR 171 +FD L SA+ Sbjct: 154 PAFDFLTSAK 163 >gi|224476388|ref|YP_002633994.1| hypothetical protein Sca_0900 [Staphylococcus carnosus subsp. carnosus TM300] gi|254807265|sp|B9DPF1|RIMP_STACT RecName: Full=Ribosome maturation factor rimP gi|222420995|emb|CAL27809.1| conserved hypothetical protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 155 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 54/80 (67%), Gaps = 2/80 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I +IQPV+++++F V+I +E K+ L+I ++++ G + L DC S+ IS +++ E Sbjct: 8 IEEIIQPVLDDLNFELVEIEFTKEGKDHFLRISIDKE-GGVDLNDCTLASEKISEVMNEE 66 Query: 84 NIIEGHYRLEVSSPGIDRPM 103 + IE Y L+V+SPG +RP+ Sbjct: 67 DPIEQMYYLDVASPGAERPI 86 >gi|149194181|ref|ZP_01871279.1| hypothetical protein CMTB2_03813 [Caminibacter mediatlanticus TB-2] gi|149136134|gb|EDM24612.1| hypothetical protein CMTB2_03813 [Caminibacter mediatlanticus TB-2] Length = 147 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/108 (30%), Positives = 61/108 (56%), Gaps = 4/108 (3%) Query: 24 DISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 ++ +VI+ ++E+ I E ++ ++++ + G + L DC ++ ISPI DV Sbjct: 5 ELKNVIKNIVEDNGCELYDIEETTEGEHKYFRVYITKP-GGVNLNDCTAINNLISPIFDV 63 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 E+ ++G Y LEVSSPG++R + + F + G V ++ L+ G K K Sbjct: 64 EDPVDGKYFLEVSSPGVERKLTKSEHFEKSIGENV--KVTLNDGTKIK 109 >gi|70726650|ref|YP_253564.1| hypothetical protein SH1649 [Staphylococcus haemolyticus JCSC1435] gi|82582359|sp|Q4L5W7|RIMP_STAHJ RecName: Full=Ribosome maturation factor rimP gi|68447374|dbj|BAE04958.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 155 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 81/157 (51%), Gaps = 10/157 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + ++ ++I P+++E++F V++ +E K+ L+I ++++ G + L DC S+ IS Sbjct: 4 ITEEVETIITPILDELNFELVEVEYTKEGKDHFLRISIDKE-GGVNLNDCTLASEKISEA 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS-SGDKQKLIGKIMGT 138 +D + I Y L+V+SPG +RP+ ++ D+ V + GDK+ L G + Sbjct: 63 MDENDPIPDMYYLDVASPGAERPIKKEKDYHNAIDKPVFVSLYAPIEGDKEWL-GILKAV 121 Query: 139 SETGFFLE-KEKRGEKDMNELQIAISFDSLLSARLIV 174 + +E KEK K QI I + + AR V Sbjct: 122 DDDTITMEVKEKAKTK-----QIEIPRNKIAKARHAV 153 >gi|255530055|ref|YP_003090427.1| hypothetical protein Phep_0139 [Pedobacter heparinus DSM 2366] gi|255343039|gb|ACU02365.1| protein of unknown function DUF150 [Pedobacter heparinus DSM 2366] Length = 154 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 77/136 (56%), Gaps = 8/136 (5%) Query: 41 VQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGID 100 V++ +L L+ I V+ D+G ++++DC +S+ + L+ EN IE Y LEVSSPG+ Sbjct: 24 VEVKMLPNNKLI--IHVDGDEG-ISIQDCAAISRHVGFHLEEENTIEKAYNLEVSSPGVG 80 Query: 101 RPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE-KEKRGEKDMNELQ 159 P+ K +L+ G ++ + L G+ ++ GK++ E G +E K K K + ++ Sbjct: 81 EPLKLKRQYLKNVGRELSVK--LDGGEVKE--GKLLAADEQGITIEAKIKEKGKKVQLVE 136 Query: 160 IAISFDSLLSARLIVT 175 I F+ ++ +++++ Sbjct: 137 TRIDFNKIIETKVLIS 152 >gi|222151099|ref|YP_002560253.1| hypothetical protein MCCL_0850 [Macrococcus caseolyticus JCSC5402] gi|254806624|sp|B9EBE6|RIMP_MACCJ RecName: Full=Ribosome maturation factor rimP gi|222120222|dbj|BAH17557.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 155 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 67/123 (54%), Gaps = 4/123 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ QPV+E + F V + ++E + L+I +++ G + + DC S+ IS ++D E Sbjct: 8 VEAICQPVVESLGFELVDVEYVKEGPDYYLRIAIDKP-GGIDISDCALASEKISEVMDKE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNG-HVVACEIVLSSGDKQKLIGKIMGTSETG 142 + I Y L+VSSPG +RP+ ++ D+ G HV GDK+ IG++ S+ Sbjct: 67 DPITEAYFLDVSSPGAERPLKKEKDYENAIGKHVYVKLYEPVEGDKE-WIGELKEVSKDT 125 Query: 143 FFL 145 L Sbjct: 126 ITL 128 >gi|33592373|ref|NP_880017.1| hypothetical protein BP1245 [Bordetella pertussis Tohama I] gi|33602224|ref|NP_889784.1| hypothetical protein BB3248 [Bordetella bronchiseptica RB50] gi|51316792|sp|Q7VYR4|RIMP_BORPE RecName: Full=Ribosome maturation factor rimP gi|51316959|sp|Q7WHG0|RIMP_BORBR RecName: Full=Ribosome maturation factor rimP gi|33572018|emb|CAE41541.1| conserved hypothetical protein [Bordetella pertussis Tohama I] gi|33576662|emb|CAE33740.1| conserved hypothetical protein [Bordetella bronchiseptica RB50] gi|332381789|gb|AEE66636.1| hypothetical protein BPTD_1235 [Bordetella pertussis CS] Length = 168 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 47/66 (71%), Gaps = 3/66 (4%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 LL++ ++R DG + + DCE++S+ +S + +VENI + RLEV SPG+DRP+ +++F R Sbjct: 29 LLRVTIDRVDG-VRIEDCEQVSRQLSRVYEVENI--DYKRLEVGSPGVDRPLRNEAEFRR 85 Query: 112 WNGHVV 117 + G + Sbjct: 86 FAGERI 91 >gi|332184779|gb|AEE27033.1| clustered with transcription termination protein NusA [Francisella cf. novicida 3523] Length = 150 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 53/81 (65%), Gaps = 1/81 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L D+ +++P+ ++ + I ++ L ++IF++ ++G +++ DC+ +S+ +S I Sbjct: 2 LLDDLYEIVEPITADLGYILWGIEVVGSGKLTIRIFIDHENG-VSVDDCQIVSKEVSAIF 60 Query: 81 DVENIIEGHYRLEVSSPGIDR 101 DVE+ I G Y LEVSSPG++R Sbjct: 61 DVEDPISGKYILEVSSPGMNR 81 >gi|319892282|ref|YP_004149157.1| transcription termination protein NusA-like protein [Staphylococcus pseudintermedius HKU10-03] gi|317161978|gb|ADV05521.1| transcription termination protein NusA-like protein [Staphylococcus pseudintermedius HKU10-03] gi|323464621|gb|ADX76774.1| conserved hypothetical protein [Staphylococcus pseudintermedius ED99] Length = 155 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 77/152 (50%), Gaps = 8/152 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++IQPV++E++F V + +E ++ L+I +++ G + L DC S+ IS ++D + Sbjct: 8 VETIIQPVLDELNFELVDVEFAKEGRDHYLRIAIDKP-GGVDLNDCTLASERISEVMDEQ 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS-SGDKQKLIGKIMGTSETG 142 + I Y L+VSSPG +RP+ + F + + GDK+ L G + +E Sbjct: 67 DPIPQAYYLDVSSPGAERPIKNEKGFQNAIEQPIFVSLYAPIEGDKEWL-GHLKSVTEDA 125 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + + + I I D + AR V Sbjct: 126 ITMEVKVKAKTKT----ITIPRDKIAKARHAV 153 >gi|259585811|sp|A6T0Z0|RIMP_JANMA RecName: Full=Ribosome maturation factor rimP Length = 161 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 57/95 (60%), Gaps = 9/95 (9%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVE-----RDDGNMTLRDCEELSQAISPI 79 +S++I+ + M + V + L+++F++ D G +T+ DCE+++ + + Sbjct: 3 LSALIEKTVVGMGYELVNFE--QAARGLVRVFIDFTPEDADKGAITVEDCEKVTHQLLHV 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNG 114 L VEN + RLEVSSPG+DRP+ + SD++R+ G Sbjct: 61 LTVENA--NYERLEVSSPGLDRPLKKLSDYVRFAG 93 >gi|325526250|gb|EGD03869.1| ribosome maturation protein RimP [Burkholderia sp. TJI49] Length = 152 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 70/123 (56%), Gaps = 8/123 (6%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 +L +++++ G ++L DCE++++ + +L VENI + RLEVSSPG+DRP+ + +DF R Sbjct: 28 MLCVYIDQPAG-ISLEDCEKVTRQLQHVLTVENI--DYERLEVSSPGLDRPLKKLADFER 84 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKE-KRGEKDMNELQIAISFDSLLSA 170 + G V+ + ++ G + + LE E K+GE M + +A + A Sbjct: 85 FAGSEVSVTLKKPLDGRKTYRGILHAPNGETIGLEFERKKGEAAMLDFTLA----DIDKA 140 Query: 171 RLI 173 RLI Sbjct: 141 RLI 143 >gi|69246861|ref|ZP_00604153.1| Protein of unknown function DUF150 [Enterococcus faecium DO] gi|257878527|ref|ZP_05658180.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257882945|ref|ZP_05662598.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|257884341|ref|ZP_05663994.1| conserved hypothetical protein [Enterococcus faecium 1,231,501] gi|257889276|ref|ZP_05668929.1| conserved hypothetical protein [Enterococcus faecium 1,231,410] gi|257894714|ref|ZP_05674367.1| conserved hypothetical protein [Enterococcus faecium 1,231,408] gi|258615948|ref|ZP_05713718.1| hypothetical protein EfaeD_09568 [Enterococcus faecium DO] gi|260560112|ref|ZP_05832290.1| conserved hypothetical protein [Enterococcus faecium C68] gi|261207400|ref|ZP_05922086.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289566678|ref|ZP_06447095.1| conserved hypothetical protein [Enterococcus faecium D344SRF] gi|293556648|ref|ZP_06675213.1| hypothetical protein EfmE1039_1955 [Enterococcus faecium E1039] gi|293560201|ref|ZP_06676703.1| hypothetical protein EfmE1162_0858 [Enterococcus faecium E1162] gi|293567722|ref|ZP_06679064.1| hypothetical protein EfmE1071_0525 [Enterococcus faecium E1071] gi|294613938|ref|ZP_06693873.1| hypothetical protein EfmE1636_0063 [Enterococcus faecium E1636] gi|294618724|ref|ZP_06698256.1| hypothetical protein EfmE1679_1593 [Enterococcus faecium E1679] gi|294620762|ref|ZP_06699969.1| hypothetical protein EfmU0317_0176 [Enterococcus faecium U0317] gi|68195042|gb|EAN09505.1| Protein of unknown function DUF150 [Enterococcus faecium DO] gi|257812755|gb|EEV41513.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257818603|gb|EEV45931.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|257820179|gb|EEV47327.1| conserved hypothetical protein [Enterococcus faecium 1,231,501] gi|257825636|gb|EEV52262.1| conserved hypothetical protein [Enterococcus faecium 1,231,410] gi|257831093|gb|EEV57700.1| conserved hypothetical protein [Enterococcus faecium 1,231,408] gi|260073947|gb|EEW62271.1| conserved hypothetical protein [Enterococcus faecium C68] gi|260078291|gb|EEW65996.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289161537|gb|EFD09420.1| conserved hypothetical protein [Enterococcus faecium D344SRF] gi|291589565|gb|EFF21371.1| hypothetical protein EfmE1071_0525 [Enterococcus faecium E1071] gi|291593213|gb|EFF24787.1| hypothetical protein EfmE1636_0063 [Enterococcus faecium E1636] gi|291595037|gb|EFF26382.1| hypothetical protein EfmE1679_1593 [Enterococcus faecium E1679] gi|291599742|gb|EFF30752.1| hypothetical protein EfmU0317_0176 [Enterococcus faecium U0317] gi|291601183|gb|EFF31470.1| hypothetical protein EfmE1039_1955 [Enterococcus faecium E1039] gi|291605873|gb|EFF35305.1| hypothetical protein EfmE1162_0858 [Enterococcus faecium E1162] Length = 157 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 66/109 (60%), Gaps = 5/109 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 ++ ++ P+++E +F V++ ++E K+ L++F++++ G + + +C +S+ +S LD Sbjct: 8 VTEMVTPILDEQNFELVEVEFVKEGKSWFLRVFIDKE-GGIDIEECAFVSEKLSEKLDAA 66 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS-SGDKQ 129 + I Y LEVSSPG +RP+ ++SD+ + G V + G+KQ Sbjct: 67 DPDPIPQAYFLEVSSPGAERPLKKESDYEKALGDYVHVSLYQPVDGEKQ 115 >gi|161524930|ref|YP_001579942.1| hypothetical protein Bmul_1757 [Burkholderia multivorans ATCC 17616] gi|189350320|ref|YP_001945948.1| hypothetical protein BMULJ_01483 [Burkholderia multivorans ATCC 17616] gi|221197755|ref|ZP_03570801.1| conserved hypothetical protein [Burkholderia multivorans CGD2M] gi|221204687|ref|ZP_03577704.1| conserved hypothetical protein [Burkholderia multivorans CGD2] gi|221214881|ref|ZP_03587849.1| conserved hypothetical protein [Burkholderia multivorans CGD1] gi|226734876|sp|A9ABD7|RIMP_BURM1 RecName: Full=Ribosome maturation factor rimP gi|160342359|gb|ABX15445.1| protein of unknown function DUF150 [Burkholderia multivorans ATCC 17616] gi|189334342|dbj|BAG43412.1| conserved hypothetical protein [Burkholderia multivorans ATCC 17616] gi|221165108|gb|EED97586.1| conserved hypothetical protein [Burkholderia multivorans CGD1] gi|221175544|gb|EEE07974.1| conserved hypothetical protein [Burkholderia multivorans CGD2] gi|221181687|gb|EEE14088.1| conserved hypothetical protein [Burkholderia multivorans CGD2M] Length = 152 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 70/123 (56%), Gaps = 8/123 (6%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 +L +++++ G ++L DCE++++ + +L VENI + RLEVSSPG+DRP+ + +DF R Sbjct: 28 MLCVYIDQPAG-ISLEDCEKVTRQLQHVLTVENI--DYERLEVSSPGLDRPLKKLADFER 84 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKE-KRGEKDMNELQIAISFDSLLSA 170 + G V+ + ++ G + + LE E K+GE M + +A + A Sbjct: 85 FAGSEVSVTLKKPLDGRKTYRGILHAPNGETIGLEFERKKGEAAMLDFTLA----DIDKA 140 Query: 171 RLI 173 RLI Sbjct: 141 RLI 143 >gi|33596481|ref|NP_884124.1| hypothetical protein BPP1860 [Bordetella parapertussis 12822] gi|51316795|sp|Q7W9A7|RIMP_BORPA RecName: Full=Ribosome maturation factor rimP gi|33566250|emb|CAE37161.1| conserved hypothetical protein [Bordetella parapertussis] Length = 168 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 47/66 (71%), Gaps = 3/66 (4%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 LL++ ++R DG + + DCE++S+ +S + +VENI + RLEV SPG+DRP+ +++F R Sbjct: 29 LLRVTIDRVDG-VRIEDCEQVSRQLSHVYEVENI--DYKRLEVGSPGVDRPLRNEAEFRR 85 Query: 112 WNGHVV 117 + G + Sbjct: 86 FAGERI 91 >gi|149277311|ref|ZP_01883453.1| hypothetical protein PBAL39_10486 [Pedobacter sp. BAL39] gi|149232188|gb|EDM37565.1| hypothetical protein PBAL39_10486 [Pedobacter sp. BAL39] Length = 154 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 77/136 (56%), Gaps = 8/136 (5%) Query: 41 VQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGID 100 V++ +L L+ I V+ D+G ++++DC +S+ + L+ EN IE Y LEVSSPG+ Sbjct: 24 VEVKMLPNNKLI--IHVDGDEG-ISIQDCAAISRHVGFHLEEENTIEKAYNLEVSSPGVG 80 Query: 101 RPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE-KEKRGEKDMNELQ 159 P+ K + + G V+ + LS G+ ++ GK++ + G +E K K K ++ Sbjct: 81 EPLKLKRQYDKNIGREVSVK--LSGGEVKE--GKLLSVDDKGIIIEAKVKEKGKKAQLVE 136 Query: 160 IAISFDSLLSARLIVT 175 ++ F+S+ +++++ Sbjct: 137 TSVDFNSITETKVLIS 152 >gi|154174423|ref|YP_001408783.1| hypothetical protein CCV52592_0357 [Campylobacter curvus 525.92] gi|259585735|sp|A7GZZ1|RIMP_CAMC5 RecName: Full=Ribosome maturation factor rimP gi|112802245|gb|EAT99589.1| protein conserved hypothetical protein [Campylobacter curvus 525.92] Length = 138 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 55/98 (56%), Gaps = 6/98 (6%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 + +I++ ++ G ++L DCE++S+ +SPI DVE I G Y LEVSSPG++R + F Sbjct: 28 IYRIYITKN-GGVSLDDCEKVSRLLSPIFDVEPPISGDYNLEVSSPGLERKLSEARHFKA 86 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEK 149 G +V + + K G+++ + LE ++ Sbjct: 87 SLGELVKAQTA-----EAKFAGRLVKADDESIALENDE 119 >gi|313115475|ref|ZP_07800940.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310622185|gb|EFQ05675.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 161 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/104 (26%), Positives = 55/104 (52%), Gaps = 2/104 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++++P +E M R + +E + L++ +++D G M C ++S A+ PILD Sbjct: 13 VEALVRPTVEGMGLRLWDVVFEKEGPDWYLRVLIDKD-GTMDTDTCADVSHALDPILDEA 71 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD 127 + I+ Y LEV SPG+ R + R + G + +++ + D Sbjct: 72 DPIDQSYYLEVGSPGLGRKLTRPEHYEALKGQKIRVKLIRPNAD 115 >gi|289522944|ref|ZP_06439798.1| hypothetical protein HMPREF1705_00858 [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503487|gb|EFD24651.1| hypothetical protein HMPREF1705_00858 [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 161 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 8/128 (6%) Query: 47 EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV-ENIIEGHYRLEVSSPGIDRPMVR 105 E ++L+I++ G + ++DCE +S+ + LD E I G Y LEVSSPG+D P+ Sbjct: 34 EHGRMILRIYINTP-GGINVKDCETVSRKVDKFLDSREEIFGGRYYLEVSSPGLDAPLFY 92 Query: 106 KSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFD 165 DF + G V + G ++ GKI+ K G D E I I F Sbjct: 93 IKDFKNYVGKTVRIKTHDPVGSRRNFKGKIIEILSNNDI----KLGLDDGTE--ILIPFQ 146 Query: 166 SLLSARLI 173 ++ ARL+ Sbjct: 147 NISKARLV 154 >gi|259585815|sp|A4G7S9|RIMP_HERAR RecName: Full=Ribosome maturation factor rimP Length = 161 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 40/55 (72%), Gaps = 2/55 (3%) Query: 60 DDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNG 114 D G++T+ DCE+++ + +L VEN + RLEVSSPG+DRP+ + SD++R+ G Sbjct: 41 DKGSITVEDCEKVTHQLLHVLTVENA--NYERLEVSSPGLDRPLKKLSDYVRFAG 93 >gi|152981795|ref|YP_001354187.1| hypothetical protein mma_2497 [Janthinobacterium sp. Marseille] gi|151281872|gb|ABR90282.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 170 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 57/95 (60%), Gaps = 9/95 (9%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVE-----RDDGNMTLRDCEELSQAISPI 79 +S++I+ + M + V + L+++F++ D G +T+ DCE+++ + + Sbjct: 12 LSALIEKTVVGMGYELVNFE--QAARGLVRVFIDFTPEDADKGAITVEDCEKVTHQLLHV 69 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNG 114 L VEN + RLEVSSPG+DRP+ + SD++R+ G Sbjct: 70 LTVEN--ANYERLEVSSPGLDRPLKKLSDYVRFAG 102 >gi|254252538|ref|ZP_04945856.1| hypothetical protein BDAG_01771 [Burkholderia dolosa AUO158] gi|124895147|gb|EAY69027.1| hypothetical protein BDAG_01771 [Burkholderia dolosa AUO158] Length = 152 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 70/123 (56%), Gaps = 8/123 (6%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 +L I++++ G ++L DCE++++ + +L VENI + RLEVSSPG+DRP+ + +DF R Sbjct: 28 MLCIYIDQPAG-ISLDDCEKVTRQLQHVLTVENI--DYERLEVSSPGLDRPLKKLADFER 84 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKE-KRGEKDMNELQIAISFDSLLSA 170 + G V+ + ++ G + + LE E K+GE M + +A + A Sbjct: 85 FAGSEVSVTLKKPLDGRKTYRGILHAPNGETIGLEFERKKGEAAMLDFTLA----DIDKA 140 Query: 171 RLI 173 RLI Sbjct: 141 RLI 143 >gi|206559871|ref|YP_002230635.1| hypothetical protein BCAL1505 [Burkholderia cenocepacia J2315] gi|226734182|sp|B4E7K9|RIMP_BURCJ RecName: Full=Ribosome maturation factor rimP gi|198035912|emb|CAR51804.1| conserved hypothetical protein [Burkholderia cenocepacia J2315] Length = 152 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 70/123 (56%), Gaps = 8/123 (6%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 +L I++++ G ++L DCE++++ + +L VENI + RLEVSSPG+DRP+ + +DF R Sbjct: 28 MLCIYIDQPAG-ISLDDCEKVTRQLQHVLTVENI--DYERLEVSSPGLDRPLKKLADFER 84 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKE-KRGEKDMNELQIAISFDSLLSA 170 + G V+ + ++ G + + LE E K+GE M + +A + A Sbjct: 85 FAGSEVSVTLKKPLDGRKTYRGILHAPNGETIGLEFEGKKGEAAMLDFTLA----DIDKA 140 Query: 171 RLI 173 RLI Sbjct: 141 RLI 143 >gi|56707227|ref|YP_169123.1| hypothetical protein FTT_0048 [Francisella tularensis subsp. tularensis SCHU S4] gi|110669697|ref|YP_666254.1| hypothetical protein FTF0048 [Francisella tularensis subsp. tularensis FSC198] gi|115315430|ref|YP_764153.1| hypothetical protein FTH_1748 [Francisella tularensis subsp. holarctica OSU18] gi|169656764|ref|YP_001429349.2| hypothetical protein FTA_1918 [Francisella tularensis subsp. holarctica FTNF002-00] gi|254375032|ref|ZP_04990512.1| conserved hypothetical protein [Francisella novicida GA99-3548] gi|254874066|ref|ZP_05246776.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis MA00-2987] gi|81598096|sp|Q5NIL9|RIMP_FRATT RecName: Full=Ribosome maturation factor rimP gi|122324584|sp|Q0BK68|RIMP_FRATO RecName: Full=Ribosome maturation factor rimP gi|123169692|sp|Q14K22|RIMP_FRAT1 RecName: Full=Ribosome maturation factor rimP gi|189030342|sp|A7NEJ0|RIMP_FRATF RecName: Full=Ribosome maturation factor rimP gi|56603719|emb|CAG44681.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110320030|emb|CAL08064.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC198] gi|115130329|gb|ABI83516.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica OSU18] gi|151572750|gb|EDN38404.1| conserved hypothetical protein [Francisella novicida GA99-3548] gi|164551832|gb|ABU62393.2| conserved hypothetical protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|254840065|gb|EET18501.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis MA00-2987] Length = 152 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 53/81 (65%), Gaps = 1/81 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L D+ +++P+ ++ + I ++ L ++IF++ ++G +++ DC+ +S+ IS + Sbjct: 4 LLDDLYEIVEPITADLGYILWGIEVVGSGKLTIRIFIDHENG-VSVDDCQIVSKEISAVF 62 Query: 81 DVENIIEGHYRLEVSSPGIDR 101 DVE+ + G Y LEVSSPG++R Sbjct: 63 DVEDPVSGKYILEVSSPGMNR 83 >gi|168492709|ref|ZP_02716852.1| conserved hypothetical protein [Streptococcus pneumoniae CDC3059-06] gi|183576817|gb|EDT97345.1| conserved hypothetical protein [Streptococcus pneumoniae CDC3059-06] Length = 159 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 79/152 (51%), Gaps = 7/152 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 + V++PVIE F V I + +++L IFV++ +G +TL D +L++ ISP+LD Sbjct: 11 VREVVEPVIE-APFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEIISPVLDTI 68 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI-GKIMGTSE 140 + Y LE++SPG++RP+ K G + + + DKQK+ G ++ E Sbjct: 69 KPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGL-YQAIDKQKVFEGTLLAFEE 127 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G +E + K ++ ++ + L+ +L Sbjct: 128 DGLTMEYMDKTRKKTVQIPYSLVSKARLAVKL 159 >gi|89257074|ref|YP_514436.1| hypothetical protein FTL_1811 [Francisella tularensis subsp. holarctica LVS] gi|118498224|ref|YP_899274.1| hypothetical protein FTN_1662 [Francisella tularensis subsp. novicida U112] gi|134301262|ref|YP_001121230.1| hypothetical protein FTW_0124 [Francisella tularensis subsp. tularensis WY96-3418] gi|167009461|ref|ZP_02274392.1| hypothetical protein Ftulh_01737 [Francisella tularensis subsp. holarctica FSC200] gi|194324408|ref|ZP_03058181.1| conserved hypothetical protein [Francisella tularensis subsp. novicida FTE] gi|208780251|ref|ZP_03247593.1| conserved hypothetical protein [Francisella novicida FTG] gi|224456288|ref|ZP_03664761.1| hypothetical protein FtultM_00215 [Francisella tularensis subsp. tularensis MA00-2987] gi|290954350|ref|ZP_06558971.1| hypothetical protein FtulhU_09047 [Francisella tularensis subsp. holarctica URFT1] gi|295312214|ref|ZP_06803014.1| hypothetical protein FtulhU_09034 [Francisella tularensis subsp. holarctica URFT1] gi|122500220|sp|Q2A1G6|RIMP_FRATH RecName: Full=Ribosome maturation factor rimP gi|226696298|sp|A4IW08|RIMP_FRATW RecName: Full=Ribosome maturation factor rimP gi|226736401|sp|A0Q8F5|RIMP_FRATN RecName: Full=Ribosome maturation factor rimP gi|89144905|emb|CAJ80250.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica LVS] gi|118424130|gb|ABK90520.1| conserved protein of unknown function [Francisella novicida U112] gi|134049039|gb|ABO46110.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis WY96-3418] gi|194321473|gb|EDX18958.1| conserved hypothetical protein [Francisella tularensis subsp. novicida FTE] gi|208743900|gb|EDZ90202.1| conserved hypothetical protein [Francisella novicida FTG] gi|282158335|gb|ADA77726.1| hypothetical protein NE061598_00270 [Francisella tularensis subsp. tularensis NE061598] gi|332678960|gb|AEE88089.1| clustered with transcription termination protein NusA [Francisella cf. novicida Fx1] Length = 150 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 53/81 (65%), Gaps = 1/81 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L D+ +++P+ ++ + I ++ L ++IF++ ++G +++ DC+ +S+ IS + Sbjct: 2 LLDDLYEIVEPITADLGYILWGIEVVGSGKLTIRIFIDHENG-VSVDDCQIVSKEISAVF 60 Query: 81 DVENIIEGHYRLEVSSPGIDR 101 DVE+ + G Y LEVSSPG++R Sbjct: 61 DVEDPVSGKYILEVSSPGMNR 81 >gi|332665271|ref|YP_004448059.1| ribosome maturation factor rimP [Haliscomenobacter hydrossis DSM 1100] gi|332334085|gb|AEE51186.1| Ribosome maturation factor rimP [Haliscomenobacter hydrossis DSM 1100] Length = 158 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 75/151 (49%), Gaps = 10/151 (6%) Query: 25 ISSVIQPVIEEMSFRSV-QISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I +++Q +E F I + +E L++FV+ D G M C+ +S+ + LD Sbjct: 6 IEALLQEKYQEPEFADCFTIEIKQEGGNRLEVFVDSDSG-MQFEKCQRISRFLEAHLDTN 64 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + Y LEVSSPGI+RP+ +LR G E+ LS+G+ + G + + Sbjct: 65 GWLGEVYTLEVSSPGIERPLKFARQYLRNIGRTF--EVRLSAGETK--TGVLKAVNPESI 120 Query: 144 FLEKE---KRGEKDMN-ELQIAISFDSLLSA 170 LE+E K G+K+M +Q I F+ + A Sbjct: 121 VLEEEIKWKEGKKNMKGTVQTVIPFEHIAKA 151 >gi|302387321|ref|YP_003823143.1| protein of unknown function DUF150 [Clostridium saccharolyticum WM1] gi|302197949|gb|ADL05520.1| protein of unknown function DUF150 [Clostridium saccharolyticum WM1] Length = 155 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 69/133 (51%), Gaps = 2/133 (1%) Query: 31 PVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGH 89 P+++E F V + ++E + L+ +++++ G +T+ DCE +S+ + LD ++ I Sbjct: 17 PLMKENHFELVDVEYVKEAGSWYLRAYIDKE-GGITVDDCETISRRLGDWLDEKDFIADS 75 Query: 90 YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEK 149 Y LEVSSPG+ RP+ + DF R G V ++ ++ G + + +E Sbjct: 76 YILEVSSPGLGRPLKKDKDFNRSIGKEVDIKLYKPLNKQKDFTGTLTSYDRETVTITQED 135 Query: 150 RGEKDMNELQIAI 162 E +N +IA+ Sbjct: 136 GIELVLNRPEIAL 148 >gi|294101967|ref|YP_003553825.1| protein of unknown function DUF150 [Aminobacterium colombiense DSM 12261] gi|293616947|gb|ADE57101.1| protein of unknown function DUF150 [Aminobacterium colombiense DSM 12261] Length = 159 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 69/116 (59%), Gaps = 7/116 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILD-V 82 +S+ ++ ++E + + V + +E KNL ++++++ G +T++DCE +S+++S LD Sbjct: 11 LSASLRQIVESLGYECVGVVFAQESKNLYVKVYIDVL-GGITVKDCETVSRSLSRYLDEN 69 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVA--CEIVLSSGDKQKLIGKIM 136 ++ + Y LEV S G+DRP+ D+ R+ G V C+ ++ +++ G I+ Sbjct: 70 DSALPDRYFLEVGSAGLDRPLFSLDDYARFAGKKVKIRCQTLVEG--RKRFTGTIL 123 >gi|251772258|gb|EES52828.1| conserved protein of unknown function [Leptospirillum ferrodiazotrophum] Length = 171 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 64/114 (56%), Gaps = 1/114 (0%) Query: 32 VIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYR 91 +++ M + L ++ +L++FV+ +G +T+ E +S+ +S +LDV + G Y Sbjct: 20 LLDSMGLTLYDLVLPKKSGGVLRVFVDGPEG-VTIDQIESVSRRVSVLLDVLDPFPGRYH 78 Query: 92 LEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFL 145 LEVSSPG+DR + D + G V+ ++V + ++ L G+I + GFFL Sbjct: 79 LEVSSPGLDRLLKIPEDLRKNEGKWVSLKLVDAIEGQKVLKGRIGSVGDAGFFL 132 >gi|134095612|ref|YP_001100687.1| hypothetical protein HEAR2435 [Herminiimonas arsenicoxydans] gi|133739515|emb|CAL62566.1| Conserved hypothetical protein [Herminiimonas arsenicoxydans] Length = 172 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 40/55 (72%), Gaps = 2/55 (3%) Query: 60 DDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNG 114 D G++T+ DCE+++ + +L VEN + RLEVSSPG+DRP+ + SD++R+ G Sbjct: 52 DKGSITVEDCEKVTHQLLHVLTVENA--NYERLEVSSPGLDRPLKKLSDYVRFAG 104 >gi|317133696|ref|YP_004093010.1| protein of unknown function DUF150 [Ethanoligenens harbinense YUAN-3] gi|315471675|gb|ADU28279.1| protein of unknown function DUF150 [Ethanoligenens harbinense YUAN-3] Length = 165 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 2/99 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ PV E + I ++E + L+I++++D G + + DCE S+AI LD Sbjct: 11 VEALALPVAETLGLSIWDIEYVKEGASWFLRIYIDKD-GGVGIEDCEAFSRAIDGPLDEA 69 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV 122 ++I Y LEVSSPGI+R + R + F + G V ++ Sbjct: 70 DLIPQQYYLEVSSPGIERELKRDAHFQAFIGKKVHVRLI 108 >gi|325142813|gb|EGC65184.1| hypothetical protein NMB9615945_0622 [Neisseria meningitidis 961-5945] Length = 109 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 2/77 (2%) Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 +G +T+ DC +S +S + VE+I + LE+SSPG+DRP+ + +DF+R+ G + Sbjct: 2 EGGITVEDCATVSNHLSRVFMVEDI--DYKNLEISSPGLDRPLKKAADFVRFAGQNAKIK 59 Query: 121 IVLSSGDKQKLIGKIMG 137 L ++ IGKI G Sbjct: 60 TRLPIDGQKNFIGKIEG 76 >gi|312796185|ref|YP_004029107.1| hypothetical protein RBRH_03643 [Burkholderia rhizoxinica HKI 454] gi|312167960|emb|CBW74963.1| Hypothetical cytosolic protein [Burkholderia rhizoxinica HKI 454] Length = 216 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 53/82 (64%), Gaps = 3/82 (3%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 +L++F+++ G + + DCE++++ + +L VENI + RLEVSSPG+DRP+ +++DF R Sbjct: 92 MLRVFIDQPAG-IAIDDCEKVTRQLQHVLTVENI--DYERLEVSSPGLDRPLKKRADFER 148 Query: 112 WNGHVVACEIVLSSGDKQKLIG 133 + G V + G ++ G Sbjct: 149 FAGSEVMVTLKQPLGGRKSFRG 170 >gi|257453567|ref|ZP_05618857.1| hypothetical protein ENHAE0001_1621 [Enhydrobacter aerosaccus SK60] gi|257449025|gb|EEV23978.1| hypothetical protein ENHAE0001_1621 [Enhydrobacter aerosaccus SK60] Length = 169 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/162 (23%), Positives = 80/162 (49%), Gaps = 14/162 (8%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVE-----RDDG-NMTLRDCEELSQA 75 +++ +I+P + I + + + LL+I++E R +G +T+ DC ++ Sbjct: 8 AELTQIIEPAVTACDVSLWGIEFVPQGRRSLLRIYIEALPEDRAEGKQVTIEDCAAVTHQ 67 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD----KQKL 131 + +LD+ + I G Y LEVSSPG+DR + G ++ ++ + G ++K+ Sbjct: 68 VGGVLDLHDPIAGEYLLEVSSPGLDRAFFSAEQLHDYVGQTISLRLIHAIGQGSDKRRKV 127 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 G+++ E ++ E +N+ +AI D++ A L+ Sbjct: 128 TGELVNIDERQLTVKTEN---DQVNDQLLAIELDNIDKANLV 166 >gi|332670043|ref|YP_004453051.1| hypothetical protein Celf_1529 [Cellulomonas fimi ATCC 484] gi|332339081|gb|AEE45664.1| protein of unknown function DUF150 [Cellulomonas fimi ATCC 484] Length = 193 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 41/65 (63%) Query: 58 ERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 E D+G + L E+++A+S LD ++++ G Y LEVSSPG+ RP+ ++ F R G V Sbjct: 47 EDDEGELDLDRVAEVTRAVSDALDAQDVVAGEYTLEVSSPGVSRPLTQRRHFARAVGRSV 106 Query: 118 ACEIV 122 + +V Sbjct: 107 SVRLV 111 >gi|262377016|ref|ZP_06070242.1| UPF0090 protein [Acinetobacter lwoffii SH145] gi|262308054|gb|EEY89191.1| UPF0090 protein [Acinetobacter lwoffii SH145] Length = 174 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 65/132 (49%), Gaps = 18/132 (13%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVER-----------DDG------NMTL 66 + +I P +E + I L + K LL+I++++ +DG + + Sbjct: 10 LQDLIAPAVEACNVNLWGIEFLPQGKCSLLRIYIDKPVDESVAPAINEDGEEEQGRGIGV 69 Query: 67 RDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 +DC ++Q + +LDV + I G Y LEVSSPG DRP + + GH VA ++ + Sbjct: 70 QDCVRVTQQVGAMLDVHDPISGEYSLEVSSPGWDRPFFQLEQMSGYIGHTVALRLISAVD 129 Query: 127 DKQKLIGKIMGT 138 +++K K++ Sbjct: 130 NRRKFQAKLVAV 141 >gi|62263138|gb|AAX78134.1| unknown protein [synthetic construct] Length = 187 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 53/81 (65%), Gaps = 1/81 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L D+ +++P+ ++ + I ++ L ++IF++ ++G +++ DC+ +S+ IS + Sbjct: 30 LLDDLYEIVEPITADLGYILWGIEVVGSGKLTIRIFIDHENG-VSVDDCQIVSKEISAVF 88 Query: 81 DVENIIEGHYRLEVSSPGIDR 101 DVE+ + G Y LEVSSPG++R Sbjct: 89 DVEDPVSGKYILEVSSPGMNR 109 >gi|259645132|sp|Q10XM0|RIMP_TRIEI RecName: Full=Ribosome maturation factor rimP Length = 153 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 50/99 (50%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 +L++ + + L DCE +S AI LD NII Y LE+SSPGI + + DF+ Sbjct: 37 ILRLDIRHPHQDTGLDDCERMSNAIGEQLDAANIIPEPYLLEISSPGISKFLDNDRDFIA 96 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKR 150 + G VA K IG+++ +T ++ ++ R Sbjct: 97 FKGFNVAVNTSEPYKGKNYWIGQLVSRDQTAVYINQKGR 135 >gi|259016312|sp|Q3IJ55|RIMP_PSEHT RecName: Full=Ribosome maturation factor rimP Length = 151 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 65/120 (54%), Gaps = 2/120 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L D+ +++ P +E + F + ++ ++ L++++ + G +++ +C + S+ IS I Sbjct: 4 LEQDLVAMLTPAVEMLGFELHGLEFVQAGRHSTLRVYITHEAG-ISVDNCADASRQISAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DR + ++ + + G V L ++ G ++ + Sbjct: 63 LDVEDPITNEYDLEVSSPGVDRLLFKQDHYEQAQGEEVQLRTKLPQDGRRNFKGDLIAVT 122 >gi|319778228|ref|YP_004129141.1| transcription termination protein NusA [Taylorella equigenitalis MCE9] gi|317108252|gb|ADU90998.1| transcription termination protein NusA [Taylorella equigenitalis MCE9] Length = 171 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 46/66 (69%), Gaps = 3/66 (4%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 LL++ ++ D G +T+ DCEE+S+ +S I +VE++ + RLEV SPG DRP+ ++ DF R Sbjct: 29 LLRVTIDIDRG-ITIEDCEEVSRLLSRIYEVEDV--DYARLEVGSPGTDRPLKKEDDFHR 85 Query: 112 WNGHVV 117 + G V Sbjct: 86 FAGQRV 91 >gi|297617184|ref|YP_003702343.1| hypothetical protein Slip_0999 [Syntrophothermus lipocalidus DSM 12680] gi|297145021|gb|ADI01778.1| protein of unknown function DUF150 [Syntrophothermus lipocalidus DSM 12680] Length = 153 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 64/114 (56%), Gaps = 6/114 (5%) Query: 29 IQPVIE-EMSFRSVQISLLEEKN----LLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++P+IE E+ + + ++ KN +LQ+F+++ G + L C++ S+ I LD E Sbjct: 10 VEPIIERELEPVGIDVVDVQYKNQAGRWVLQVFIDKP-GGVDLDTCQQASEIIGRALDWE 68 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 + I Y LEVSSPG+DR + + DF R+ G V ++ +++ G ++G Sbjct: 69 DPIPHSYVLEVSSPGLDRVLKKDKDFERFTGKKVTVKVREPINNQKNFKGLLLG 122 >gi|330963973|gb|EGH64233.1| ribosome maturation protein RimP [Pseudomonas syringae pv. actinidiae str. M302091] Length = 152 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 56/94 (59%), Gaps = 2/94 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ PV+ + ++ I + K+ +L+I+++++ G + + DC +S+ IS +LDVE Sbjct: 8 LQGLLAPVVVALGYQCWGIDFSSQGKHSVLRIYIDKE-GGVLVDDCAIVSRQISGVLDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + I Y LEVSSPG++RP+ F + G V Sbjct: 67 DPISTEYTLEVSSPGMERPLFTIEQFASYAGEQV 100 >gi|227551757|ref|ZP_03981806.1| protein of hypothetical function DUF150 [Enterococcus faecium TX1330] gi|257887082|ref|ZP_05666735.1| conserved hypothetical protein [Enterococcus faecium 1,141,733] gi|257895647|ref|ZP_05675300.1| conserved hypothetical protein [Enterococcus faecium Com12] gi|257898237|ref|ZP_05677890.1| conserved hypothetical protein [Enterococcus faecium Com15] gi|293377742|ref|ZP_06623931.1| conserved hypothetical protein [Enterococcus faecium PC4.1] gi|293570614|ref|ZP_06681665.1| hypothetical protein EfmE980_0412 [Enterococcus faecium E980] gi|227179062|gb|EEI60034.1| protein of hypothetical function DUF150 [Enterococcus faecium TX1330] gi|257823136|gb|EEV50068.1| conserved hypothetical protein [Enterococcus faecium 1,141,733] gi|257832212|gb|EEV58633.1| conserved hypothetical protein [Enterococcus faecium Com12] gi|257836149|gb|EEV61223.1| conserved hypothetical protein [Enterococcus faecium Com15] gi|291609285|gb|EFF38556.1| hypothetical protein EfmE980_0412 [Enterococcus faecium E980] gi|292643742|gb|EFF61863.1| conserved hypothetical protein [Enterococcus faecium PC4.1] Length = 157 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 65/109 (59%), Gaps = 5/109 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 ++ ++ P+++E F V++ ++E K+ L++F++++ G + + +C +S+ +S LD Sbjct: 8 VTEMVTPILDEQHFELVEVEFVKEGKSWFLRVFIDKE-GGIDIEECAFVSEKLSEKLDAA 66 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS-SGDKQ 129 + I Y LEVSSPG +RP+ ++SD+ + G V + G+KQ Sbjct: 67 DPDPIPQAYFLEVSSPGAERPLKKESDYEKALGDYVHVSLYQPVDGEKQ 115 >gi|330877235|gb|EGH11384.1| ribosome maturation protein RimP [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 152 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 56/94 (59%), Gaps = 2/94 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ PV+ + ++ I + K+ +L+I+++++ G + + DC +S+ IS +LDVE Sbjct: 8 LQGLLAPVVVALGYQCWGIDFSSQGKHSVLRIYIDKE-GGVLVDDCAIVSRQISGVLDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + I Y LEVSSPG++RP+ F + G V Sbjct: 67 DPISTEYTLEVSSPGMERPLFTIEQFASYAGEQV 100 >gi|329736175|gb|EGG72447.1| hypothetical protein SEVCU028_0396 [Staphylococcus epidermidis VCU028] Length = 114 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 56/87 (64%), Gaps = 2/87 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++IQPV+ +++F V I ++E K+ L+I ++++ G + L DC S+ IS ++D Sbjct: 8 VEALIQPVLNDLNFELVDIEYVKEGKDHFLRISIDKE-GGVDLNDCTIASEKISEVMDEN 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFL 110 + I Y L+V+SPG +RP+ +K F+ Sbjct: 67 DPIPEMYYLDVASPGAERPIKKKKIFI 93 >gi|113477416|ref|YP_723477.1| hypothetical protein Tery_3979 [Trichodesmium erythraeum IMS101] gi|110168464|gb|ABG53004.1| protein of unknown function DUF150 [Trichodesmium erythraeum IMS101] Length = 172 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 50/99 (50%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 +L++ + + L DCE +S AI LD NII Y LE+SSPGI + + DF+ Sbjct: 56 ILRLDIRHPHQDTGLDDCERMSNAIGEQLDAANIIPEPYLLEISSPGISKFLDNDRDFIA 115 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKR 150 + G VA K IG+++ +T ++ ++ R Sbjct: 116 FKGFNVAVNTSEPYKGKNYWIGQLVSRDQTAVYINQKGR 154 >gi|237798561|ref|ZP_04587022.1| ribosome maturation protein RimP [Pseudomonas syringae pv. oryzae str. 1_6] gi|237803808|ref|ZP_04591393.1| ribosome maturation protein RimP [Pseudomonas syringae pv. oryzae str. 1_6] gi|237805250|ref|ZP_04591954.1| ribosome maturation protein RimP [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021414|gb|EGI01471.1| ribosome maturation protein RimP [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025788|gb|EGI05844.1| ribosome maturation protein RimP [Pseudomonas syringae pv. oryzae str. 1_6] gi|331026358|gb|EGI06413.1| ribosome maturation protein RimP [Pseudomonas syringae pv. oryzae str. 1_6] Length = 152 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 58/98 (59%), Gaps = 2/98 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ PV+ + ++ I + K+ +L+I+++++ G + + DC +S+ IS +LDVE Sbjct: 8 LQDLLAPVVVALGYQCWGIDFSSQGKHSVLRIYIDKE-GGVLVDDCAIVSRQISGVLDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 + I Y LEVSSPG++RP+ F + G V ++ Sbjct: 67 DPISTEYTLEVSSPGMERPLFTIEQFASYAGEQVKIKL 104 >gi|257482263|ref|ZP_05636304.1| hypothetical protein PsyrptA_03277 [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289624600|ref|ZP_06457554.1| hypothetical protein PsyrpaN_05581 [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|298488454|ref|ZP_07006485.1| 30S ribosomal subunit maturation factor [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|302185430|ref|ZP_07262103.1| hypothetical protein Psyrps6_03769 [Pseudomonas syringae pv. syringae 642] gi|298157079|gb|EFH98168.1| 30S ribosomal subunit maturation factor [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320322530|gb|EFW78623.1| hypothetical protein PsgB076_21417 [Pseudomonas syringae pv. glycinea str. B076] gi|320330001|gb|EFW85988.1| hypothetical protein PsgRace4_10252 [Pseudomonas syringae pv. glycinea str. race 4] gi|330868244|gb|EGH02953.1| ribosome maturation protein RimP [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330875222|gb|EGH09371.1| ribosome maturation protein RimP [Pseudomonas syringae pv. glycinea str. race 4] gi|330888660|gb|EGH21321.1| ribosome maturation protein RimP [Pseudomonas syringae pv. mori str. 301020] gi|330895307|gb|EGH27645.1| ribosome maturation protein RimP [Pseudomonas syringae pv. japonica str. M301072PT] gi|330937944|gb|EGH41731.1| ribosome maturation protein RimP [Pseudomonas syringae pv. pisi str. 1704B] gi|330950307|gb|EGH50567.1| ribosome maturation protein RimP [Pseudomonas syringae Cit 7] gi|330969649|gb|EGH69715.1| ribosome maturation protein RimP [Pseudomonas syringae pv. aceris str. M302273PT] gi|330981088|gb|EGH79191.1| ribosome maturation protein RimP [Pseudomonas syringae pv. aptata str. DSM 50252] gi|330987053|gb|EGH85156.1| ribosome maturation protein RimP [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011497|gb|EGH91553.1| ribosome maturation protein RimP [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 152 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 58/98 (59%), Gaps = 2/98 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ PV+ + ++ I + K+ +L+I+++++ G + + DC +S+ IS +LDVE Sbjct: 8 LQDLLAPVVVALGYQCWGIDFSSQGKHSVLRIYIDKE-GGVLVDDCAIVSRQISGVLDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 + I Y LEVSSPG++RP+ F + G V ++ Sbjct: 67 DPISTEYTLEVSSPGMERPLFTIEQFASYAGEQVKIKL 104 >gi|66047409|ref|YP_237250.1| hypothetical protein Psyr_4182 [Pseudomonas syringae pv. syringae B728a] gi|71733923|ref|YP_276313.1| hypothetical protein PSPPH_4191 [Pseudomonas syringae pv. phaseolicola 1448A] gi|289676022|ref|ZP_06496912.1| hypothetical protein PsyrpsF_22296 [Pseudomonas syringae pv. syringae FF5] gi|34223096|sp|P95578|RIMP_PSEU2 RecName: Full=Ribosome maturation factor rimP gi|91208357|sp|Q48E75|RIMP_PSE14 RecName: Full=Ribosome maturation factor rimP gi|1835603|gb|AAC45133.1| 15 kDa protein [Pseudomonas syringae pv. syringae] gi|63258116|gb|AAY39212.1| Protein of unknown function DUF150 [Pseudomonas syringae pv. syringae B728a] gi|71554476|gb|AAZ33687.1| YhbC-like protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 158 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 58/98 (59%), Gaps = 2/98 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ PV+ + ++ I + K+ +L+I+++++ G + + DC +S+ IS +LDVE Sbjct: 14 LQDLLAPVVVALGYQCWGIDFSSQGKHSVLRIYIDKE-GGVLVDDCAIVSRQISGVLDVE 72 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 + I Y LEVSSPG++RP+ F + G V ++ Sbjct: 73 DPISTEYTLEVSSPGMERPLFTIEQFASYAGEQVKIKL 110 >gi|172057850|ref|YP_001814310.1| hypothetical protein Exig_1841 [Exiguobacterium sibiricum 255-15] gi|226696098|sp|B1YI66|RIMP_EXIS2 RecName: Full=Ribosome maturation factor rimP gi|171990371|gb|ACB61293.1| protein of unknown function DUF150 [Exiguobacterium sibiricum 255-15] Length = 155 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 76/151 (50%), Gaps = 6/151 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + + +P++E V + ++E + L++ +++D G + L DC +++ +S L+ + Sbjct: 8 VEQLAKPIVEREGMELVDVEFVKEGADWFLRVSIDKD-GGVDLEDCVNINEKLSEALNQD 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I+ Y L+V+SPG +RP+ + DF + G V + D + G ++ SE Sbjct: 67 DPIDEPYYLDVASPGAERPLKKTEDFEKAIGKHVYIKTHDPVKDATEFEGTLLTYSEEML 126 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 LE + K L+I I + + ARL V Sbjct: 127 ELEVRVKTRK----LKIEIPVNKIAMARLAV 153 >gi|330958051|gb|EGH58311.1| ribosome maturation protein RimP [Pseudomonas syringae pv. maculicola str. ES4326] Length = 152 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 58/98 (59%), Gaps = 2/98 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ PV+ + ++ I + K+ +L+I+++++ G + + DC +S+ IS +LDVE Sbjct: 8 LQDLLAPVVVALGYQCWGIDFSSQGKHSVLRIYIDKE-GGVLVDDCAIVSRQISGVLDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 + I Y LEVSSPG++RP+ F + G V ++ Sbjct: 67 DPITTEYTLEVSSPGMERPLFTIEQFASYAGEQVKIKL 104 >gi|115351433|ref|YP_773272.1| hypothetical protein Bamb_1380 [Burkholderia ambifaria AMMD] gi|170700024|ref|ZP_02891049.1| protein of unknown function DUF150 [Burkholderia ambifaria IOP40-10] gi|171317090|ref|ZP_02906293.1| protein of unknown function DUF150 [Burkholderia ambifaria MEX-5] gi|172060472|ref|YP_001808124.1| hypothetical protein BamMC406_1420 [Burkholderia ambifaria MC40-6] gi|122323374|sp|Q0BFY5|RIMP_BURCM RecName: Full=Ribosome maturation factor rimP gi|226734154|sp|B1YP34|RIMP_BURA4 RecName: Full=Ribosome maturation factor rimP gi|115281421|gb|ABI86938.1| protein of unknown function DUF150 [Burkholderia ambifaria AMMD] gi|170135083|gb|EDT03386.1| protein of unknown function DUF150 [Burkholderia ambifaria IOP40-10] gi|171097724|gb|EDT42551.1| protein of unknown function DUF150 [Burkholderia ambifaria MEX-5] gi|171992989|gb|ACB63908.1| protein of unknown function DUF150 [Burkholderia ambifaria MC40-6] Length = 152 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 70/123 (56%), Gaps = 8/123 (6%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 +L I++++ G ++L DCE++++ + +L VENI + RLEVSSPG+DRP+ + +DF R Sbjct: 28 MLCIYIDQLAG-ISLEDCEKVTRQLQHVLTVENI--DYERLEVSSPGLDRPLKKLADFER 84 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKE-KRGEKDMNELQIAISFDSLLSA 170 + G V+ + ++ G + + LE E K+GE M + +A + A Sbjct: 85 FAGSEVSVTLKKPLDGRKTYRGILHAPNGETIGLEFEGKKGEAAMLDFTLA----DIDKA 140 Query: 171 RLI 173 RLI Sbjct: 141 RLI 143 >gi|297562527|ref|YP_003681501.1| hypothetical protein Ndas_3595 [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846975|gb|ADH68995.1| protein of unknown function DUF150 [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 160 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 68/126 (53%), Gaps = 7/126 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I+ +++PV+ E + L K +L++ V+ D+G + L E+SQ ++ +LD Sbjct: 10 IAELLEPVLAEAGLDLEAVELTPAGKRRVLRVVVDSDNG-VDLDTVGEVSQEVNTLLDSS 68 Query: 84 NIIEGH-YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 +++ Y LEV+SPG+DRP+ + + R G +V + S + K+ G++ G + G Sbjct: 69 DVMGAQPYVLEVTSPGVDRPLTQPRHWRRSRGRLV----IASLAEGGKVTGRVTGADDDG 124 Query: 143 FFLEKE 148 L+ E Sbjct: 125 VTLDVE 130 >gi|145593915|ref|YP_001158212.1| hypothetical protein Strop_1367 [Salinispora tropica CNB-440] gi|259586196|sp|A4X4N4|RIMP_SALTO RecName: Full=Ribosome maturation factor rimP gi|145303252|gb|ABP53834.1| protein of unknown function DUF150 [Salinispora tropica CNB-440] Length = 220 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 77/150 (51%), Gaps = 17/150 (11%) Query: 14 RIFGDMGLAGDISS-------VIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMT 65 R G + GD++S V++PV+ E + ++S+ + ++Q+ V+ DG + Sbjct: 24 RSAGRVSRGGDLASRRARLHEVVEPVVGEAGYDLEELSISRAGRRHVVQVIVD-ADGGID 82 Query: 66 LRDCEELSQAISPILDVE-----NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 L ++S+A+S LD +I+ G Y+LEVSSPG+ RP+ + R G +V Sbjct: 83 LDAVADVSRAVSAALDAAEEARGDIVAGEYQLEVSSPGVSRPLTLPRHWRRNAGRLVRVT 142 Query: 121 IV--LSSGDKQKLIGKIMGTSETGFFLEKE 148 + +GD+Q L G+++ + LE + Sbjct: 143 VRGGPDAGDRQ-LTGRVVEADDEQVVLETD 171 >gi|257865908|ref|ZP_05645561.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257872241|ref|ZP_05651894.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257875535|ref|ZP_05655188.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] gi|257799842|gb|EEV28894.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257806405|gb|EEV35227.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257809701|gb|EEV38521.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] Length = 157 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 64/109 (58%), Gaps = 5/109 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 ++ ++ P+++ F V++ ++E KN L++F++++ G + + +C +S+ +S LD Sbjct: 8 VTDIVTPILDAQKFELVEVEFVKEGKNWFLRVFIDKE-GGIDIEECAFVSEQLSEQLDQC 66 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS-SGDKQ 129 + I Y LEVSSPG +RP+ +++D+ R G + + G+KQ Sbjct: 67 EPDPIPQAYFLEVSSPGAERPLKKEADYQRAVGEYIHVSLYQPIDGEKQ 115 >gi|325847928|ref|ZP_08170099.1| hypothetical protein HMPREF9246_0391 [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480797|gb|EGC83851.1| hypothetical protein HMPREF9246_0391 [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 146 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 72/143 (50%), Gaps = 7/143 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M L + ++ I + + V I + E KN +L+ F+ +D G +T+ DCE+ S +S Sbjct: 1 MDLISKLKENLESDINNLGYELVDIEFVTEGKNKILRFFIYKD-GGITIDDCEKTSNLLS 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD ++I+ Y LEVSSP + RP+ D R ++ E+ L +G +K + I Sbjct: 60 ERLDEIDLIKSFYYLEVSSPDLSRPLKTDRDLERNKDELL--EVKLKNG--EKFLANIEE 115 Query: 138 TSETGFFLEKEK-RGEKDMNELQ 159 E + E + E D NE++ Sbjct: 116 IKEDSLVFKCEDGQKEVDKNEIK 138 >gi|291166363|gb|EFE28409.1| hypothetical protein HMPREF0389_00324 [Filifactor alocis ATCC 35896] Length = 152 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 58/90 (64%), Gaps = 1/90 (1%) Query: 53 LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRW 112 L++FV++D G + + + ++++ ++ +LD ++ I+ Y LEVS+PG+ R + ++ DF+R Sbjct: 37 LRVFVDKD-GGLDIDEISDITRVLNKLLDEKDPIQQQYFLEVSTPGLGRALKKERDFIRE 95 Query: 113 NGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 +G + ++ +++L G ++G ETG Sbjct: 96 SGKEIELKLYQPVNGQKELSGVLIGLDETG 125 >gi|224543311|ref|ZP_03683850.1| hypothetical protein CATMIT_02511 [Catenibacterium mitsuokai DSM 15897] gi|224523844|gb|EEF92949.1| hypothetical protein CATMIT_02511 [Catenibacterium mitsuokai DSM 15897] Length = 153 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 47/74 (63%), Gaps = 1/74 (1%) Query: 31 PVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGH 89 P+I + ++EK L++F+E++DGN+ + C +S+A+S LD ++I+ Sbjct: 11 PIIASFECHLDSMEYVKEKGEWYLRVFIEKNDGNLDMDTCVAVSEAVSEKLDELDLIKDE 70 Query: 90 YRLEVSSPGIDRPM 103 Y LEVSSPGI++P+ Sbjct: 71 YYLEVSSPGIEKPL 84 >gi|255994862|ref|ZP_05427997.1| conserved hypothetical protein [Eubacterium saphenum ATCC 49989] gi|255993575|gb|EEU03664.1| conserved hypothetical protein [Eubacterium saphenum ATCC 49989] Length = 187 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 58/101 (57%), Gaps = 4/101 (3%) Query: 68 DCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD 127 +C +S+AIS LD +II+ +Y LEVS+PGIDR + + DF+R+ G V + Sbjct: 87 ECTAISEAISEYLDKNDIIDNNYYLEVSTPGIDRELKKDIDFIRFKGRSVDISLYKRIDG 146 Query: 128 KQKLIGKIMGTSETGFFLEKEKRGE----KDMNELQIAISF 164 +++ G ++ ++ G +E ++ + D+ ++ +AI F Sbjct: 147 QKEYRGTLIEKNDEGIAVEVDESTKVFSNNDVAKVNLAIEF 187 >gi|229918665|ref|YP_002887311.1| hypothetical protein EAT1b_2952 [Exiguobacterium sp. AT1b] gi|259585773|sp|C4L660|RIMP_EXISA RecName: Full=Ribosome maturation factor rimP gi|229470094|gb|ACQ71866.1| protein of unknown function DUF150 [Exiguobacterium sp. AT1b] Length = 156 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/152 (25%), Positives = 74/152 (48%), Gaps = 6/152 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + S+ P++E + V + ++E + L++++++ G + L DC +++ +S L+ Sbjct: 8 VESIALPIVERENMELVDVEFVKEGPDWFLRVYIDKP-GGVDLDDCVNINEQLSEKLNET 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + IE Y L+VSSPG +RP+ + SDF R G V + ++ G + Sbjct: 67 DPIEQAYYLDVSSPGAERPLKKPSDFERAVGKNVYMKTFAPIDGAKEFEGILTAYDGETV 126 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +E + K +++ D + ARL VT Sbjct: 127 VIETRIKTRKKA----VSLPVDKIAQARLAVT 154 >gi|259585828|sp|B8FCY3|RIMP_DESAA RecName: Full=Ribosome maturation factor rimP Length = 152 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 1/71 (1%) Query: 47 EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRK 106 E +L+++V+++ G +TL DC +S+ + +LD YRLEVSSPG+DRP+ R+ Sbjct: 27 EGGGYILRLYVDKE-GGITLGDCTMVSRYVGDLLDAYADEMPRYRLEVSSPGLDRPLTRE 85 Query: 107 SDFLRWNGHVV 117 F R+ G Sbjct: 86 DHFRRFEGRTA 96 >gi|257126085|ref|YP_003164199.1| hypothetical protein Lebu_1320 [Leptotrichia buccalis C-1013-b] gi|257050024|gb|ACV39208.1| protein of unknown function DUF150 [Leptotrichia buccalis C-1013-b] Length = 163 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 58/101 (57%), Gaps = 3/101 (2%) Query: 53 LQIFVERDDGNMT-LRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 L+++VE++DG+ T L DC + S+ I + D ++I+ + LEVS+PG++R + + DFLR Sbjct: 37 LRVYVEKEDGSTTTLDDCIDFSREIDGVAD--DLIDEKFFLEVSTPGVERRLKKPKDFLR 94 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGE 152 + G + + + +K +GK+ FL E G+ Sbjct: 95 FLGEKINVQAKSNIDGAKKFLGKLEKFENDTIFLLDENLGK 135 >gi|194467744|ref|ZP_03073730.1| protein of unknown function DUF150 [Lactobacillus reuteri 100-23] gi|194452597|gb|EDX41495.1| protein of unknown function DUF150 [Lactobacillus reuteri 100-23] Length = 157 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 80/156 (51%), Gaps = 14/156 (8%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILD-V 82 ++ ++ P++++ F + ++E K+ L++++++D G +TL DC +S +S LD V Sbjct: 8 VTDLVTPILQDHDFYLYDLEFVKEGKSWYLRVYIDKD-GGITLEDCALVSDELSEALDNV 66 Query: 83 E-NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE- 140 E + I Y LEVSSPG +RP+ ++ D+ R H + + ++ G + S+ Sbjct: 67 EPDPIPQAYFLEVSSPGAERPLKKEEDYQRAIDHYIHISLYQQINGQKIYEGTLTQLSDK 126 Query: 141 --TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 T +L+K + QI I + ARL + Sbjct: 127 EITLDYLDKTRHR-------QITIDRQKIAQARLAI 155 >gi|134295572|ref|YP_001119307.1| hypothetical protein Bcep1808_1464 [Burkholderia vietnamiensis G4] gi|166979856|sp|A4JDW9|RIMP_BURVG RecName: Full=Ribosome maturation factor rimP gi|134138729|gb|ABO54472.1| protein of unknown function DUF150 [Burkholderia vietnamiensis G4] Length = 152 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 70/123 (56%), Gaps = 8/123 (6%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 +L I++++ G ++L DCE++++ + +L VENI + RLEVSSPG+DRP+ + +DF R Sbjct: 28 MLCIYIDQPAG-ISLDDCEKVTRQLQHVLTVENI--DYERLEVSSPGLDRPLKKLADFER 84 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEK-RGEKDMNELQIAISFDSLLSA 170 + G V+ + ++ G + + LE E+ +GE M + +A + A Sbjct: 85 FAGSEVSVTLKKPLDGRKTYRGILHAPNGETIGLEFERNKGEAAMLDFTLA----DIDKA 140 Query: 171 RLI 173 RLI Sbjct: 141 RLI 143 >gi|313681591|ref|YP_004059329.1| hypothetical protein Sulku_0462 [Sulfuricurvum kujiense DSM 16994] gi|313154451|gb|ADR33129.1| protein of unknown function DUF150 [Sulfuricurvum kujiense DSM 16994] Length = 143 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 5/90 (5%) Query: 47 EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRK 106 E +N + ++ V G ++L C E + ISP+LDV + G YRLEVSSPGI+R + Sbjct: 26 ENENTIFRVSV-TAPGGVSLDQCVEATHLISPLLDVTPPVGGEYRLEVSSPGIERKLKTL 84 Query: 107 SDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 F + G ++V S+ +K+K G+++ Sbjct: 85 DHFAQSVGE----KVVFSTVNKEKFDGEVV 110 >gi|229592638|ref|YP_002874757.1| hypothetical protein PFLU5255 [Pseudomonas fluorescens SBW25] gi|229364504|emb|CAY52354.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25] Length = 173 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 58/95 (61%), Gaps = 2/95 (2%) Query: 24 DISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 ++ +++ PV+ + + I + ++ +L+++++++ G + + DC +S+ IS +LDV Sbjct: 28 ELQALLAPVVVALGYECWGIEFSAQGRHSMLRVYIDKE-GGVLVDDCAIVSRQISGVLDV 86 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 E+ I Y LEVSSPG++RP+ F ++ G V Sbjct: 87 EDPISVEYTLEVSSPGMERPLFTIDQFAKFAGEQV 121 >gi|28871626|ref|NP_794245.1| hypothetical protein PSPTO_4492 [Pseudomonas syringae pv. tomato str. DC3000] gi|213966649|ref|ZP_03394800.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] gi|301383159|ref|ZP_07231577.1| hypothetical protein PsyrptM_11007 [Pseudomonas syringae pv. tomato Max13] gi|302063406|ref|ZP_07254947.1| hypothetical protein PsyrptK_25769 [Pseudomonas syringae pv. tomato K40] gi|302133779|ref|ZP_07259769.1| hypothetical protein PsyrptN_20414 [Pseudomonas syringae pv. tomato NCPPB 1108] gi|34222830|sp|Q87WQ3|RIMP_PSESM RecName: Full=Ribosome maturation factor rimP gi|28854878|gb|AAO57940.1| conserved protein of unknown function [Pseudomonas syringae pv. tomato str. DC3000] gi|213928499|gb|EEB62043.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] Length = 158 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 56/94 (59%), Gaps = 2/94 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ PV+ + ++ I + K+ +L+I+++++ G + + DC +S+ IS +LDVE Sbjct: 14 LQGLLAPVVVALGYQCWGIDFSSQGKHSVLRIYIDKE-GGVLVDDCAIVSRQISGVLDVE 72 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + I Y LEVSSPG++RP+ F + G V Sbjct: 73 DPISTEYTLEVSSPGMERPLFTIEQFALYAGEQV 106 >gi|312963085|ref|ZP_07777570.1| hypothetical protein PFWH6_5007 [Pseudomonas fluorescens WH6] gi|311282596|gb|EFQ61192.1| hypothetical protein PFWH6_5007 [Pseudomonas fluorescens WH6] Length = 173 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 58/95 (61%), Gaps = 2/95 (2%) Query: 24 DISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 ++ +++ PV+ + + I + ++ +L+++++++ G + + DC +S+ IS +LDV Sbjct: 28 ELQALLAPVVVALGYECWGIEFSAQGRHSMLRVYIDKE-GGVLVDDCAIVSRQISGVLDV 86 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 E+ I Y LEVSSPG++RP+ F ++ G V Sbjct: 87 EDPISVEYTLEVSSPGMERPLFTIEQFAKFAGEQV 121 >gi|329915248|ref|ZP_08276236.1| clustered with transcription termination protein NusA [Oxalobacteraceae bacterium IMCC9480] gi|327544953|gb|EGF30294.1| clustered with transcription termination protein NusA [Oxalobacteraceae bacterium IMCC9480] Length = 161 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 47/68 (69%), Gaps = 7/68 (10%) Query: 52 LLQIFV-----ERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRK 106 LL++++ + + G +T+ DCE+++ + +L VEN + + RLEVSSPG+DRP+ + Sbjct: 28 LLRVYIDFPPEQAERGMITVEDCEKVTHQLLHVLTVENAV--YERLEVSSPGLDRPLKKL 85 Query: 107 SDFLRWNG 114 +D+LR+ G Sbjct: 86 ADYLRFAG 93 >gi|70734335|ref|YP_257975.1| hypothetical protein PFL_0842 [Pseudomonas fluorescens Pf-5] gi|91208376|sp|Q4KIF8|RIMP_PSEF5 RecName: Full=Ribosome maturation factor rimP gi|68348634|gb|AAY96240.1| 15 kDa protein [Pseudomonas fluorescens Pf-5] Length = 158 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 59/98 (60%), Gaps = 2/98 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +++ PV+ + + I + ++ LL+++++++ G + + DC +S+ IS +LDVE Sbjct: 14 LQALLAPVVVALGYECWGIEFSAQGRHSLLRVYIDKE-GGVLVDDCAIVSRQISGVLDVE 72 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 + I Y LEVSSPG++RP+ F ++ G V ++ Sbjct: 73 DPISVEYTLEVSSPGMERPLFTLEQFAKYVGEQVKIKL 110 >gi|218782564|ref|YP_002433882.1| hypothetical protein Dalk_4736 [Desulfatibacillum alkenivorans AK-01] gi|218763948|gb|ACL06414.1| protein of unknown function DUF150 [Desulfatibacillum alkenivorans AK-01] Length = 182 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 1/71 (1%) Query: 47 EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRK 106 E +L+++V+++ G +TL DC +S+ + +LD YRLEVSSPG+DRP+ R+ Sbjct: 57 EGGGYILRLYVDKE-GGITLGDCTMVSRYVGDLLDAYADEMPRYRLEVSSPGLDRPLTRE 115 Query: 107 SDFLRWNGHVV 117 F R+ G Sbjct: 116 DHFRRFEGRTA 126 >gi|333024105|ref|ZP_08452169.1| hypothetical protein STTU_1611 [Streptomyces sp. Tu6071] gi|332743957|gb|EGJ74398.1| hypothetical protein STTU_1611 [Streptomyces sp. Tu6071] Length = 197 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 6/99 (6%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILD-VENIIEGHYRLEVSSPGIDRPMVRKS 107 + +LQI V+ D G ++L C ELS+ IS +LD + + E Y LEV+SPG DRP+ Sbjct: 48 RRRVLQIVVDGDSG-VSLDTCAELSREISTVLDDTDAMGENEYVLEVTSPGADRPLTAHR 106 Query: 108 DFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE 146 ++R G +V ++ + +L+ +++ + G LE Sbjct: 107 HYVRATGRLVRFQL----AEGGELVARLLKADDAGLDLE 141 >gi|331016646|gb|EGH96702.1| ribosome maturation protein RimP [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 158 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 64/117 (54%), Gaps = 2/117 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ PV+ + ++ I + K+ +L+I+++++ G + + DC +S+ IS +LDVE Sbjct: 14 LQGLLAPVVVALGYQCWGIDFSSQGKHSVLRIYIDKE-GGVLVDDCAIVSRQISGVLDVE 72 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + I Y LEVSSPG++RP+ F + G V ++ ++ G + G E Sbjct: 73 DPISTEYTLEVSSPGMERPLFTIEQFALYAGEQVRIKLRSPFEGRRNFQGLLRGVEE 129 >gi|330807481|ref|YP_004351943.1| Sm_like superfamily [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375589|gb|AEA66939.1| Conserved hypothetical protein; Sm_like superfamily [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 152 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 58/98 (59%), Gaps = 2/98 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +++ PV+ + + I + ++ LL+++++++ G + + DC +S+ IS +LDVE Sbjct: 8 LQALLAPVVVALGYECWGIEFSAQGRHSLLRVYIDKE-GGVLVDDCAIVSRQISGVLDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 + I Y LEVSSPG++RP+ F + G V ++ Sbjct: 67 DPITSEYTLEVSSPGMERPLFTLEQFASFAGEQVKIKL 104 >gi|302522223|ref|ZP_07274565.1| conserved hypothetical protein [Streptomyces sp. SPB78] gi|318062644|ref|ZP_07981365.1| ribosome maturation protein RimP [Streptomyces sp. SA3_actG] gi|318081084|ref|ZP_07988416.1| ribosome maturation protein RimP [Streptomyces sp. SA3_actF] gi|302431118|gb|EFL02934.1| conserved hypothetical protein [Streptomyces sp. SPB78] Length = 183 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 6/99 (6%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILD-VENIIEGHYRLEVSSPGIDRPMVRKS 107 + +LQI V+ D G ++L C ELS+ IS +LD + + E Y LEV+SPG DRP+ Sbjct: 34 RRRVLQIVVDGDSG-VSLDTCAELSREISTVLDDTDAMGENEYVLEVTSPGADRPLTAHR 92 Query: 108 DFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE 146 ++R G +V ++ + +L+ +++ + G LE Sbjct: 93 HYVRATGRLVRFQL----AEGGELVARLLKADDAGLDLE 127 >gi|288556946|ref|YP_003428881.1| hypothetical protein BpOF4_19750 [Bacillus pseudofirmus OF4] gi|288548106|gb|ADC51989.1| hypothetical protein BpOF4_19750 [Bacillus pseudofirmus OF4] Length = 156 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 58/102 (56%), Gaps = 5/102 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ ++ P+++E++ V + +E N L++F++ D G + L DC ++S+ +S LD Sbjct: 9 VAELVTPLLDELNLELVDVEFKKEGPNWFLRVFIDSDTG-VDLEDCGKVSEQLSEKLDEM 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRW---NGHVVACEIV 122 + I Y LEVSSPG +RP+ + D + N HV E V Sbjct: 68 DPIPQAYFLEVSSPGAERPLKKVKDLEKAVGKNVHVTTYEPV 109 >gi|293115578|ref|ZP_05792144.2| putative cytoplasmic protein [Butyrivibrio crossotus DSM 2876] gi|292808915|gb|EFF68120.1| putative cytoplasmic protein [Butyrivibrio crossotus DSM 2876] Length = 166 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 2/87 (2%) Query: 26 SSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + +I P+IE F V + ++E + L+ ++++ G +T+ DC E+S+ S LD + Sbjct: 23 TELIMPIIESCGFELVDLEYVKEGSSKYLRAYIDKP-GGITVDDCAEVSRPFSDKLDEAD 81 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLR 111 I+ Y LEVSSPG+ RP + DF R Sbjct: 82 FIDEAYILEVSSPGLFRPFKKDKDFER 108 >gi|163791588|ref|ZP_02185989.1| hypothetical protein CAT7_03409 [Carnobacterium sp. AT7] gi|159873137|gb|EDP67240.1| hypothetical protein CAT7_03409 [Carnobacterium sp. AT7] Length = 157 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 55/88 (62%), Gaps = 4/88 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 ++ ++QP++E F V I ++E +N L++++++ +G + L DC +S+ IS +D Sbjct: 8 VTEIVQPIVERNQFELVDIEFVKEGQNWFLRVYIDKPEG-IDLEDCALVSEQISQHMDKI 66 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDF 109 + I Y LEVSSPG +RP+ ++ D+ Sbjct: 67 DPDPIPQAYFLEVSSPGAERPLKKEQDY 94 >gi|37523057|ref|NP_926434.1| hypothetical protein glr3488 [Gloeobacter violaceus PCC 7421] gi|35214060|dbj|BAC91429.1| glr3488 [Gloeobacter violaceus PCC 7421] Length = 182 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 69/133 (51%), Gaps = 5/133 (3%) Query: 9 SKYEPRIFGDMG---LAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNM 64 S +E F M + ++++ +PV E++ + V ++ K L++ + Sbjct: 17 SGFEAHFFDGMNPRDIVEQVTALAEPVAEQLGLQLVAVAYQTHTKPATLRVDIRHPTEGT 76 Query: 65 TLRDCEELSQAISPILDV-ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVL 123 L DCE++S+A+ +LD +++I G Y LEVSSPG++R + +F+ + G V + Sbjct: 77 GLDDCEKMSRALEALLDTRDDLIIGAYNLEVSSPGVERVLTTDREFMAFRGFPVMVKTFG 136 Query: 124 SSGDKQKLIGKIM 136 K++ G+++ Sbjct: 137 PVDGKKQWEGRLL 149 >gi|167950227|ref|ZP_02537301.1| 15 kDa protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 79 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 44/75 (58%) Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LDVE+ I+ Y LEVSSPG+DRP+ +DF R+ G V + + G++++ G + G Sbjct: 1 MLDVEDPIKEKYDLEVSSPGLDRPLFEAADFERFKGQRVRVKTRMKIGNQRRFSGTLCGL 60 Query: 139 SETGFFLEKEKRGEK 153 LE++ + + Sbjct: 61 EGNTILLEEDAQAAR 75 >gi|326803577|ref|YP_004321395.1| hypothetical protein HMPREF9243_1141 [Aerococcus urinae ACS-120-V-Col10a] gi|326650272|gb|AEA00455.1| conserved hypothetical protein [Aerococcus urinae ACS-120-V-Col10a] Length = 157 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 68/125 (54%), Gaps = 4/125 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 + ++I+ I EM ++ I+ +E K+ L+I+++ +DG +T+ DC + S+ IS ILD Sbjct: 8 VKALIEADINEMGYQLFDITFSKEGKDWYLRIYIDNNDG-ITIADCVKASEKISEILDNV 66 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 ++ I Y LEVSSPG +RP+ + + G V + + G+++ SE Sbjct: 67 EDDPIPQAYYLEVSSPGAERPLNNDNAIQQAIGKWVHLNFYHEIDGSKFVEGRLLEASEQ 126 Query: 142 GFFLE 146 F LE Sbjct: 127 YFTLE 131 >gi|268316866|ref|YP_003290585.1| hypothetical protein Rmar_1307 [Rhodothermus marinus DSM 4252] gi|262334400|gb|ACY48197.1| protein of unknown function DUF150 [Rhodothermus marinus DSM 4252] Length = 160 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 69/121 (57%), Gaps = 3/121 (2%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQA 75 G L I + ++ V++ +F + + + + +++IF++ D G +LRD E+LS+ Sbjct: 7 GTPALIEQIRARVEEVLQGTTFFLIDVVVRGRRGAHVVEIFIDGDRGP-SLRDLEQLSRE 65 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV-LSSGDKQKLIGK 134 I +LD ++++ G Y L VSSPG+DRP+V + + G + ++V ++ ++L G Sbjct: 66 IGFLLDSDDLLPGPYTLNVSSPGVDRPLVHPRQYPKHVGRELEVKLVAVADAPAERLRGT 125 Query: 135 I 135 + Sbjct: 126 L 126 >gi|77457004|ref|YP_346509.1| hypothetical protein Pfl01_0777 [Pseudomonas fluorescens Pf0-1] gi|77381007|gb|ABA72520.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1] Length = 173 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 58/95 (61%), Gaps = 2/95 (2%) Query: 24 DISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 ++ +++ PV+ + + I + ++ +L+++++++ G + + DC +S+ IS +LDV Sbjct: 28 ELQALLAPVVVALGYECWGIEFSAQGRHSMLRVYIDKE-GGVLVDDCAIVSRQISGVLDV 86 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 E+ I Y LEVSSPG++RP+ F ++ G V Sbjct: 87 EDPISVEYTLEVSSPGMERPLFTLEQFAKYVGEQV 121 >gi|160913531|ref|ZP_02076222.1| hypothetical protein EUBDOL_00007 [Eubacterium dolichum DSM 3991] gi|158434083|gb|EDP12372.1| hypothetical protein EUBDOL_00007 [Eubacterium dolichum DSM 3991] Length = 181 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 54/115 (46%) Query: 47 EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRK 106 E KN +LQI + R DG M + C E+S+ IS LD E+ I+ Y LEV SPG +R + Sbjct: 56 EGKNKILQIAIMRKDGTMDIDTCAEVSEKISAKLDEEDFIQSEYFLEVCSPGAERELKTY 115 Query: 107 SDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIA 161 G V ++ + G ++ E ++ + K E++IA Sbjct: 116 EQIKDAIGEFVYVKLKDPKAGMCDVKGTLLSCEENSILIQYMDKAVKKKAEIEIA 170 >gi|239636257|ref|ZP_04677259.1| conserved hypothetical protein [Staphylococcus warneri L37603] gi|239597612|gb|EEQ80107.1| conserved hypothetical protein [Staphylococcus warneri L37603] Length = 155 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 79/153 (51%), Gaps = 8/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 +A + +IQPV+++++F V+I ++E K+ L+I ++++ G + L DC S+ IS Sbjct: 4 IAEQVEPIIQPVLDDLNFELVEIEYVKEGKDHFLRISIDKE-GGVDLNDCTLASEKISEA 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +D + I Y L+V+SPG +RP+ + H + + + ++++ +G + Sbjct: 63 MDENDPIPEMYYLDVASPGAERPIKNEKALKDAISHPIFISLYIPIENEKEWLGILKEVK 122 Query: 140 ETGFFLE-KEKRGEKDMNELQIAISFDSLLSAR 171 E +E KEK K I I + + AR Sbjct: 123 EDIILIEVKEKSKTK-----TIEIPRNKIAKAR 150 >gi|15924255|ref|NP_371789.1| hypothetical protein SAV1265 [Staphylococcus aureus subsp. aureus Mu50] gi|15926848|ref|NP_374381.1| hypothetical protein SA1108 [Staphylococcus aureus subsp. aureus N315] gi|148267755|ref|YP_001246698.1| hypothetical protein SaurJH9_1325 [Staphylococcus aureus subsp. aureus JH9] gi|150393814|ref|YP_001316489.1| hypothetical protein SaurJH1_1351 [Staphylococcus aureus subsp. aureus JH1] gi|156979586|ref|YP_001441845.1| hypothetical protein SAHV_1255 [Staphylococcus aureus subsp. aureus Mu3] gi|253315621|ref|ZP_04838834.1| hypothetical protein SauraC_05652 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253733497|ref|ZP_04867662.1| protein of hypothetical function DUF150 [Staphylococcus aureus subsp. aureus TCH130] gi|255006052|ref|ZP_05144653.2| hypothetical protein SauraM_06265 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795679|ref|ZP_05644658.1| conserved hypothetical protein [Staphylococcus aureus A9781] gi|258416082|ref|ZP_05682350.1| conserved hypothetical protein [Staphylococcus aureus A9763] gi|258421665|ref|ZP_05684589.1| conserved hypothetical protein [Staphylococcus aureus A9719] gi|258434821|ref|ZP_05688895.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|258444603|ref|ZP_05692932.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|258447564|ref|ZP_05695708.1| hypothetical protein SAIG_00219 [Staphylococcus aureus A6300] gi|258449406|ref|ZP_05697509.1| hypothetical protein SAHG_00482 [Staphylococcus aureus A6224] gi|258454785|ref|ZP_05702749.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|269202882|ref|YP_003282151.1| hypothetical protein SAAV_1240 [Staphylococcus aureus subsp. aureus ED98] gi|282892753|ref|ZP_06300988.1| hypothetical protein SGAG_00108 [Staphylococcus aureus A8117] gi|282927607|ref|ZP_06335223.1| conserved hypothetical protein [Staphylococcus aureus A10102] gi|295406202|ref|ZP_06816009.1| UPF0090 protein [Staphylococcus aureus A8819] gi|296274823|ref|ZP_06857330.1| hypothetical protein SauraMR_00705 [Staphylococcus aureus subsp. aureus MR1] gi|297244430|ref|ZP_06928313.1| hypothetical protein SLAG_00512 [Staphylococcus aureus A8796] gi|54040041|sp|P67221|RIMP_STAAN RecName: Full=Ribosome maturation factor rimP gi|54042669|sp|P67220|RIMP_STAAM RecName: Full=Ribosome maturation factor rimP gi|166977846|sp|A7X1P6|RIMP_STAA1 RecName: Full=Ribosome maturation factor rimP gi|189038661|sp|A5ISE9|RIMP_STAA9 RecName: Full=Ribosome maturation factor rimP gi|189038668|sp|A6U184|RIMP_STAA2 RecName: Full=Ribosome maturation factor rimP gi|13701065|dbj|BAB42360.1| conserved hypotehtical protein [Staphylococcus aureus subsp. aureus N315] gi|14247035|dbj|BAB57427.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] gi|147740824|gb|ABQ49122.1| protein of unknown function DUF150 [Staphylococcus aureus subsp. aureus JH9] gi|149946266|gb|ABR52202.1| protein of unknown function DUF150 [Staphylococcus aureus subsp. aureus JH1] gi|156721721|dbj|BAF78138.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|253728551|gb|EES97280.1| protein of hypothetical function DUF150 [Staphylococcus aureus subsp. aureus TCH130] gi|257789651|gb|EEV27991.1| conserved hypothetical protein [Staphylococcus aureus A9781] gi|257839230|gb|EEV63706.1| conserved hypothetical protein [Staphylococcus aureus A9763] gi|257842351|gb|EEV66776.1| conserved hypothetical protein [Staphylococcus aureus A9719] gi|257849182|gb|EEV73164.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|257850096|gb|EEV74049.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|257853755|gb|EEV76714.1| hypothetical protein SAIG_00219 [Staphylococcus aureus A6300] gi|257857394|gb|EEV80292.1| hypothetical protein SAHG_00482 [Staphylococcus aureus A6224] gi|257863168|gb|EEV85932.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|262075172|gb|ACY11145.1| hypothetical protein SAAV_1240 [Staphylococcus aureus subsp. aureus ED98] gi|282590610|gb|EFB95687.1| conserved hypothetical protein [Staphylococcus aureus A10102] gi|282764750|gb|EFC04875.1| hypothetical protein SGAG_00108 [Staphylococcus aureus A8117] gi|285816947|gb|ADC37434.1| clustered with transcription termination protein NusA [Staphylococcus aureus 04-02981] gi|294968790|gb|EFG44812.1| UPF0090 protein [Staphylococcus aureus A8819] gi|297178460|gb|EFH37706.1| hypothetical protein SLAG_00512 [Staphylococcus aureus A8796] gi|312829659|emb|CBX34501.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315131059|gb|EFT87043.1| hypothetical protein CGSSa03_05939 [Staphylococcus aureus subsp. aureus CGS03] gi|329727532|gb|EGG63988.1| hypothetical protein SA21172_0119 [Staphylococcus aureus subsp. aureus 21172] Length = 155 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 55/86 (63%), Gaps = 2/86 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++QP++E+++F V + ++E ++ L+I ++++ G + L DC S+ IS +D Sbjct: 8 VEVIVQPIMEDLNFELVDVEYVKEGRDHFLRISIDKE-GGVDLNDCTLASEKISEAMDAN 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDF 109 + I Y L+V+SPG +RP+ ++ DF Sbjct: 67 DPIPEMYYLDVASPGAERPIKKEQDF 92 >gi|227544952|ref|ZP_03975001.1| protein of hypothetical function DUF150 [Lactobacillus reuteri CF48-3A] gi|300910017|ref|ZP_07127477.1| protein of hypothetical function DUF150 [Lactobacillus reuteri SD2112] gi|77745317|gb|ABB02559.1| unknown [Lactobacillus reuteri] gi|227185063|gb|EEI65134.1| protein of hypothetical function DUF150 [Lactobacillus reuteri CF48-3A] gi|300892665|gb|EFK86025.1| protein of hypothetical function DUF150 [Lactobacillus reuteri SD2112] Length = 162 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 59/96 (61%), Gaps = 4/96 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILD-V 82 ++ ++ P++++ F + ++E K+ L++++++D G +TL DC +S +S LD V Sbjct: 13 VTDLVTPILQDHDFYLYDLEFVKEGKSWYLRVYIDKD-GGITLEDCALVSDELSEALDNV 71 Query: 83 E-NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 E + I Y LEVSSPG +RP+ ++ D+ R H + Sbjct: 72 EPDPIPQAYFLEVSSPGAERPLKKEEDYQRAIDHYI 107 >gi|116333945|ref|YP_795472.1| hypothetical protein LVIS_1339 [Lactobacillus brevis ATCC 367] gi|122269371|sp|Q03QT1|RIMP_LACBA RecName: Full=Ribosome maturation factor rimP gi|116099292|gb|ABJ64441.1| hypothetical protein LVIS_1339 [Lactobacillus brevis ATCC 367] Length = 157 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/153 (23%), Positives = 77/153 (50%), Gaps = 8/153 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 ++++ QP++ + F V + ++E K+ L++++++ G + + +C +S +S +D Sbjct: 8 VTALAQPIVAQHQFELVDVEFVKEGKSWYLRLYIDKP-GGINIEECALVSDEVSEKMDAL 66 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + I Y LEVSSPG +RP+ + +DF + G + + G+ + G ++ + Sbjct: 67 DPDPIPQAYFLEVSSPGAERPLKKPADFEKAVGDYIHVSLYQKIGNSKVYEGTLLSLTAD 126 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 LE +G + I D++ ARL + Sbjct: 127 SLDLEVNLKGRIKT----LTIPRDAVAQARLAI 155 >gi|326799023|ref|YP_004316842.1| ribosome maturation factor rimP [Sphingobacterium sp. 21] gi|326549787|gb|ADZ78172.1| Ribosome maturation factor rimP [Sphingobacterium sp. 21] Length = 154 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 7/117 (5%) Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 D +T++DC +S+ + L+ EN IE Y LEVSSPGID P+ LR + Sbjct: 41 DQGITIQDCAAISRHVGYHLEEENAIENAYNLEVSSPGIDTPL----KLLRQYQKNIGRS 96 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEK--EKRGEKDMNELQIAISFDSLLSARLIVT 175 I L D K G ++ SE L + +++G+K + +++ + D ++ +++++ Sbjct: 97 ITLKMADGSKREGTLLAASEKEMKLAETIKEKGKKAI-QVETVVPLDQVIETKVLIS 152 >gi|315652149|ref|ZP_07905147.1| protein of hypothetical function DUF150 [Eubacterium saburreum DSM 3986] gi|315485641|gb|EFU76025.1| protein of hypothetical function DUF150 [Eubacterium saburreum DSM 3986] Length = 166 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 2/90 (2%) Query: 29 IQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 ++ + E+ F V I ++E L+++ + D G + + DC E+S+ +S LD E+ I+ Sbjct: 27 LEKLSSELKFELVDIEFVKEAGEYYLRVYCDMD-GGIGIEDCAEISRHLSDWLDEEDFID 85 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 Y LEVSSPG+ R + + DFLR G V Sbjct: 86 EGYILEVSSPGLGRTLKKDKDFLRELGKEV 115 >gi|57168691|ref|ZP_00367823.1| conserved hypothetical protein [Campylobacter coli RM2228] gi|305432680|ref|ZP_07401841.1| conserved hypothetical protein [Campylobacter coli JV20] gi|57019972|gb|EAL56652.1| conserved hypothetical protein [Campylobacter coli RM2228] gi|304444391|gb|EFM37043.1| conserved hypothetical protein [Campylobacter coli JV20] Length = 147 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 10/111 (9%) Query: 64 MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVL 123 + L DC LS+ +SPI DVE + G Y LEVSS G++R + + F + +V + Sbjct: 45 VNLDDCARLSEILSPIFDVEPPVSGEYFLEVSSAGLERKLSKIEHFAKSINELVK----I 100 Query: 124 SSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++G+K+K+ KI+ + LE + EK + F + AR + Sbjct: 101 TTGEKEKIEAKIISVEDENITLENLENQEK------TTLKFSDIKKARTFI 145 >gi|314937504|ref|ZP_07844837.1| UPF0090 family protein [Enterococcus faecium TX0133a04] gi|314942163|ref|ZP_07849017.1| UPF0090 family protein [Enterococcus faecium TX0133C] gi|314947497|ref|ZP_07850912.1| UPF0090 family protein [Enterococcus faecium TX0082] gi|314951484|ref|ZP_07854533.1| UPF0090 family protein [Enterococcus faecium TX0133A] gi|314992574|ref|ZP_07857992.1| UPF0090 family protein [Enterococcus faecium TX0133B] gi|314995491|ref|ZP_07860591.1| UPF0090 family protein [Enterococcus faecium TX0133a01] gi|313590325|gb|EFR69170.1| UPF0090 family protein [Enterococcus faecium TX0133a01] gi|313592866|gb|EFR71711.1| UPF0090 family protein [Enterococcus faecium TX0133B] gi|313596324|gb|EFR75169.1| UPF0090 family protein [Enterococcus faecium TX0133A] gi|313599086|gb|EFR77931.1| UPF0090 family protein [Enterococcus faecium TX0133C] gi|313643145|gb|EFS07725.1| UPF0090 family protein [Enterococcus faecium TX0133a04] gi|313646047|gb|EFS10627.1| UPF0090 family protein [Enterococcus faecium TX0082] Length = 147 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 64/106 (60%), Gaps = 5/106 (4%) Query: 28 VIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDV--EN 84 ++ P+++E +F V++ ++E K+ L++F++++ G + + +C +S+ +S LD + Sbjct: 1 MVTPILDEQNFELVEVEFVKEGKSWFLRVFIDKE-GGIDIEECAFVSEKLSEKLDAADPD 59 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS-SGDKQ 129 I Y LEVSSPG +RP+ ++SD+ + G V + G+KQ Sbjct: 60 PIPQAYFLEVSSPGAERPLKKESDYEKALGDYVHVSLYQPVDGEKQ 105 >gi|148543927|ref|YP_001271297.1| hypothetical protein Lreu_0695 [Lactobacillus reuteri DSM 20016] gi|184153323|ref|YP_001841664.1| hypothetical protein LAR_0668 [Lactobacillus reuteri JCM 1112] gi|167016762|sp|A5VJD6|RIMP_LACRD RecName: Full=Ribosome maturation factor rimP gi|226708007|sp|B2G6V2|RIMP_LACRJ RecName: Full=Ribosome maturation factor rimP gi|148530961|gb|ABQ82960.1| protein of unknown function DUF150 [Lactobacillus reuteri DSM 20016] gi|183224667|dbj|BAG25184.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112] Length = 157 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 79/156 (50%), Gaps = 14/156 (8%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILD-V 82 ++ ++ P++++ F + ++E K+ L++++ +D G +TL DC +S +S LD V Sbjct: 8 VTDLVTPILQDHDFYLYDLEFVKEGKSWYLRVYINKD-GGITLEDCALVSDELSEALDNV 66 Query: 83 E-NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE- 140 E + I Y LEVSSPG +RP+ ++ D+ R H + + ++ G + S+ Sbjct: 67 EPDPIPQAYFLEVSSPGAERPLKKEEDYQRAIDHYIHISLYQQINGQKVYEGTLTQLSDK 126 Query: 141 --TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 T +L+K + QI I + ARL + Sbjct: 127 EITLDYLDKTRHR-------QITIDRQKIAQARLAI 155 >gi|313906215|ref|ZP_07839561.1| protein of unknown function DUF150 [Eubacterium cellulosolvens 6] gi|313468945|gb|EFR64301.1| protein of unknown function DUF150 [Eubacterium cellulosolvens 6] Length = 157 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 51/83 (61%), Gaps = 2/83 (2%) Query: 36 MSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEV 94 M++ V + ++E L+ + +++ G +T+ DCE +S+A LD ++IE Y LEV Sbjct: 23 MNYEFVDLEYVKEAGTWYLRAYADKE-GGITVDDCEIISRAFEEKLDAADLIEEAYILEV 81 Query: 95 SSPGIDRPMVRKSDFLRWNGHVV 117 SSPG+ RP+ ++ D++R G V Sbjct: 82 SSPGLGRPLKKERDYVRAMGQRV 104 >gi|152993548|ref|YP_001359269.1| hypothetical protein SUN_1969 [Sulfurovum sp. NBC37-1] gi|166980517|sp|A6QBQ3|RIMP_SULNB RecName: Full=Ribosome maturation factor rimP gi|151425409|dbj|BAF72912.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 142 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/92 (39%), Positives = 50/92 (54%), Gaps = 5/92 (5%) Query: 62 GNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 G + L C +S +SP LDV + GHYRLEVSSPGI+R + + F G V ++ Sbjct: 40 GGVNLDLCATISNELSPFLDVHPPMNGHYRLEVSSPGIERKLSKPIHFQNAIGEKV--KV 97 Query: 122 VLSSGDKQKLIGKIMGTSETGFFLEKEKRGEK 153 L GDK K G + + G +E K+GE+ Sbjct: 98 KLLGGDKLK--GVLKAADDKGITVET-KQGEE 126 >gi|91208372|sp|Q3KI86|RIMP_PSEPF RecName: Full=Ribosome maturation factor rimP Length = 158 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 60/99 (60%), Gaps = 2/99 (2%) Query: 24 DISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 ++ +++ PV+ + + I + ++ +L+++++++ G + + DC +S+ IS +LDV Sbjct: 13 ELQALLAPVVVALGYECWGIEFSAQGRHSMLRVYIDKE-GGVLVDDCAIVSRQISGVLDV 71 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 E+ I Y LEVSSPG++RP+ F ++ G V ++ Sbjct: 72 EDPISVEYTLEVSSPGMERPLFTLEQFAKYVGEQVKIKL 110 >gi|259586222|sp|C3K261|RIMP_PSEFS RecName: Full=Ribosome maturation factor rimP Length = 158 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 60/99 (60%), Gaps = 2/99 (2%) Query: 24 DISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 ++ +++ PV+ + + I + ++ +L+++++++ G + + DC +S+ IS +LDV Sbjct: 13 ELQALLAPVVVALGYECWGIEFSAQGRHSMLRVYIDKE-GGVLVDDCAIVSRQISGVLDV 71 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 E+ I Y LEVSSPG++RP+ F ++ G V ++ Sbjct: 72 EDPISVEYTLEVSSPGMERPLFTIDQFAKFAGEQVKIKL 110 >gi|254412382|ref|ZP_05026156.1| conserved hypothetical protein [Microcoleus chthonoplastes PCC 7420] gi|196180692|gb|EDX75682.1| conserved hypothetical protein [Microcoleus chthonoplastes PCC 7420] Length = 153 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 1/136 (0%) Query: 31 PVIEEMSFRSV-QISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGH 89 PV E++ V + + +L++ + DG+ L DCE +S+A+ LD ++I Sbjct: 15 PVAEKLGLEFVGAVFHTNRRPPVLRVDIRNRDGDTGLDDCERMSRALEAELDAVDLIPDA 74 Query: 90 YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEK 149 Y LE+SSPGI + + DF+ + G V ++ GK++ +T ++ ++ Sbjct: 75 YVLEISSPGISQELTTDRDFIAFKGFSVVVNTAEPDQGHKEWRGKLIRRDDTRVYINQKG 134 Query: 150 RGEKDMNELQIAISFD 165 R + + FD Sbjct: 135 RAIAIPRDQVTKVQFD 150 >gi|311030089|ref|ZP_07708179.1| hypothetical protein Bm3-1_06021 [Bacillus sp. m3-13] Length = 156 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 54/88 (61%), Gaps = 2/88 (2%) Query: 31 PVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGH 89 P+++EM+ V I ++E + L++FV+++ G + + DC +S+ +S LD + I + Sbjct: 15 PIVKEMNVELVDIEYVKEGSSWFLRVFVDKE-GGIDIEDCGTVSEKLSEKLDELDPIPHN 73 Query: 90 YRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 Y LEVSSPG +RP+ +K D + G V Sbjct: 74 YFLEVSSPGAERPLKKKEDIEKSVGKYV 101 >gi|332653589|ref|ZP_08419334.1| conserved hypothetical protein [Ruminococcaceae bacterium D16] gi|332518735|gb|EGJ48338.1| conserved hypothetical protein [Ruminococcaceae bacterium D16] Length = 151 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 29/109 (26%), Positives = 58/109 (53%), Gaps = 2/109 (1%) Query: 26 SSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + + QP +E + ++E L+ +++++ G +++ DCE +S+ +S LD + Sbjct: 9 AQLAQPFVEAAGCSLWDVEYVKEAGEWYLRFYIDKE-GGVSINDCEAVSRPLSDALDEAD 67 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 IEG Y LEVSS G DR + + F ++ G V ++ + ++ +G Sbjct: 68 PIEGSYTLEVSSAGADRALKKPEHFAQFQGAEVEVKLYRARDGRKDYVG 116 >gi|300772909|ref|ZP_07082778.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33861] gi|300759080|gb|EFK55907.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33861] Length = 156 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 60/103 (58%), Gaps = 5/103 (4%) Query: 43 ISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRP 102 +S+ + N +L+I V+ D G + + DC ++S+ + L+ EN+IE YRLEVSSPGID P Sbjct: 26 VSIKMQSNGVLEILVDGDSG-IAIDDCVKISRHVGFHLEEENVIETAYRLEVSSPGIDSP 84 Query: 103 MVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFL 145 ++ +R + + + + + +K GK++ +E+ + Sbjct: 85 LI----MIRQYKKNIGRNVRVKNHEGEKREGKLLNVTESNITI 123 >gi|296272022|ref|YP_003654653.1| hypothetical protein Arnit_0482 [Arcobacter nitrofigilis DSM 7299] gi|296096197|gb|ADG92147.1| protein of unknown function DUF150 [Arcobacter nitrofigilis DSM 7299] Length = 142 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 13/119 (10%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 + +I++ DG ++L C E+S+ +SPILD + G Y LEVSSPGI+R + + + ++ Sbjct: 31 IFRIYITSKDG-VSLDKCAEISRLVSPILDTNEPMYGKYNLEVSSPGIERKLKKTAHYIS 89 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 G V + DK L G+++ E + K + GE+ IS+D + SA Sbjct: 90 SIGENVK----VKDFDKNVLKGELIFADENEIKV-KTQEGEE-------TISYDKISSA 136 >gi|269792607|ref|YP_003317511.1| hypothetical protein Taci_0997 [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100242|gb|ACZ19229.1| protein of unknown function DUF150 [Thermanaerovibrio acidaminovorans DSM 6589] Length = 150 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 62/105 (59%), Gaps = 7/105 (6%) Query: 29 IQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN--I 85 I+ ++E++ + V++ L+ + ++++ ++ D + DCE +S+ + +LD E Sbjct: 13 IRRLVEDLGYICVEVKLVRDLGGQVVRVTIDSPDAPIGHGDCEAVSRKVGELLDGEGEGF 72 Query: 86 IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 ++G Y LEVSSPG +RP++ DF R+ G +I +S+G +K Sbjct: 73 LKGRYYLEVSSPGPNRPLLSLDDFRRFKGS----KIRVSTGKGKK 113 >gi|258404631|ref|YP_003197373.1| hypothetical protein Dret_0498 [Desulfohalobium retbaense DSM 5692] gi|257796858|gb|ACV67795.1| protein of unknown function DUF150 [Desulfohalobium retbaense DSM 5692] Length = 157 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 1/112 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 +S +I+P+ + + + +L+++V+ +G +++ C LS+ IS LDVE+ Sbjct: 9 LSELIKPLAASCGLDVWGMEIPASRGGVLRVYVDSPNG-VSIDQCATLSRHISVTLDVED 67 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 + G Y LEVSSPG++RP S + G VA ++ ++K G ++ Sbjct: 68 PLPGPYTLEVSSPGLERPFFTVSQLPPYIGQPVALKLQAPMQGRKKWRGVLI 119 >gi|91774421|ref|YP_544177.1| hypothetical protein Mfla_0065 [Methylobacillus flagellatus KT] gi|122399243|sp|Q1GXD8|RIMP_METFK RecName: Full=Ribosome maturation factor rimP gi|91708408|gb|ABE48336.1| protein of unknown function DUF150 [Methylobacillus flagellatus KT] Length = 144 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 73/123 (59%), Gaps = 3/123 (2%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 D++++++ + ++ + V + L + L+++F+++ +G + + DC +S +S +L VE Sbjct: 3 DLNALLERSLGQLGYELVDMEL-ANRGKLIRLFIDKPEG-INIDDCVLVSNHLSNLLAVE 60 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I+ + RLE+SSPG+DR + + SDF+R+ G ++ + ++ +G + G + Sbjct: 61 HDID-YDRLEISSPGLDRVLKKTSDFVRFAGERAQVKLRMPIEGRKNFLGILRGVDQEYL 119 Query: 144 FLE 146 LE Sbjct: 120 VLE 122 >gi|323144580|ref|ZP_08079169.1| hypothetical protein HMPREF9444_01845 [Succinatimonas hippei YIT 12066] gi|322415656|gb|EFY06401.1| hypothetical protein HMPREF9444_01845 [Succinatimonas hippei YIT 12066] Length = 175 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 7/122 (5%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 LLQIF++ DG ++ C +++ +SP LD +II Y LEVSSPG DR + Sbjct: 50 LLQIFIDSKDG-VSADTCGDITNMLSPALDAADIIAPAYILEVSSPGFDRILFTLDQARA 108 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 + G + E+ + G ++K G + +E +K Q+ I+F ++ AR Sbjct: 109 YIGKKIKAEVRIPVGGRRKFEGVLEEVTEDNSLKINDKISG------QVEIAFSNISVAR 162 Query: 172 LI 173 L+ Sbjct: 163 LV 164 >gi|227364836|ref|ZP_03848883.1| protein of hypothetical function DUF150 [Lactobacillus reuteri MM2-3] gi|325682538|ref|ZP_08162055.1| protein of hypothetical function DUF150 [Lactobacillus reuteri MM4-1A] gi|227070099|gb|EEI08475.1| protein of hypothetical function DUF150 [Lactobacillus reuteri MM2-3] gi|324978377|gb|EGC15327.1| protein of hypothetical function DUF150 [Lactobacillus reuteri MM4-1A] Length = 162 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 79/156 (50%), Gaps = 14/156 (8%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILD-V 82 ++ ++ P++++ F + ++E K+ L++++ +D G +TL DC +S +S LD V Sbjct: 13 VTDLVTPILQDHDFYLYDLEFVKEGKSWYLRVYINKD-GGITLEDCALVSDELSEALDNV 71 Query: 83 E-NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE- 140 E + I Y LEVSSPG +RP+ ++ D+ R H + + ++ G + S+ Sbjct: 72 EPDPIPQAYFLEVSSPGAERPLKKEEDYQRAIDHYIHISLYQQINGQKVYEGTLTQLSDK 131 Query: 141 --TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 T +L+K + QI I + ARL + Sbjct: 132 EITLDYLDKTRHR-------QITIDRQKIAQARLAI 160 >gi|293604236|ref|ZP_06686644.1| protein of hypothetical function DUF150 [Achromobacter piechaudii ATCC 43553] gi|292817461|gb|EFF76534.1| protein of hypothetical function DUF150 [Achromobacter piechaudii ATCC 43553] Length = 174 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 48/70 (68%), Gaps = 3/70 (4%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 LL++ ++R G + + DCE++S+ +S + +VEN+ + RLEV SPGIDRP+ +++F R Sbjct: 37 LLRVTIDRV-GGVRIEDCEQVSRQLSRVFEVENV--DYKRLEVGSPGIDRPLRNEAEFRR 93 Query: 112 WNGHVVACEI 121 + G + ++ Sbjct: 94 FAGERIEIKL 103 >gi|212696552|ref|ZP_03304680.1| hypothetical protein ANHYDRO_01090 [Anaerococcus hydrogenalis DSM 7454] gi|212676488|gb|EEB36095.1| hypothetical protein ANHYDRO_01090 [Anaerococcus hydrogenalis DSM 7454] Length = 146 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 73/143 (51%), Gaps = 7/143 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M L + ++ I + + V I + E N +L+ F+ +D G +T+ DCE+ S +S Sbjct: 1 MDLISKLKENLESDINNLGYELVDIEFVTEGNNKILRFFIYKD-GGITIDDCEKTSNLLS 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD ++I+ Y LEVSSP + RP+ D R ++ E+ L +G +K + I Sbjct: 60 ERLDEIDLIKSFYYLEVSSPDLSRPLKTDRDLERNKDELL--EVKLKNG--EKFLANIEE 115 Query: 138 TSETGF-FLEKEKRGEKDMNELQ 159 E F ++++ E D NE++ Sbjct: 116 IKENSLVFKCEDEQKEVDKNEIK 138 >gi|330816692|ref|YP_004360397.1| hypothetical protein bgla_1g17960 [Burkholderia gladioli BSR3] gi|327369085|gb|AEA60441.1| hypothetical protein bgla_1g17960 [Burkholderia gladioli BSR3] Length = 153 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 71/123 (57%), Gaps = 8/123 (6%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 +L +++++ G +++ DCE++++ + +L VENI + RLEVSSPG+DRP+ + +DF R Sbjct: 28 MLCVYIDQPAG-ISIDDCEKVTRQLQHVLTVENI--DYERLEVSSPGLDRPLKKLADFER 84 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKE-KRGEKDMNELQIAISFDSLLSA 170 + G+ ++ + ++ G + + LE E K+GE M + +A + A Sbjct: 85 FAGNEISVTLKKPLEGRKTYRGILHAPNGETIGLEFERKKGEAAMLDFTLA----DIDKA 140 Query: 171 RLI 173 RLI Sbjct: 141 RLI 143 >gi|317402908|gb|EFV83449.1| hypothetical protein HMPREF0005_01713 [Achromobacter xylosoxidans C54] Length = 175 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 45/64 (70%), Gaps = 3/64 (4%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 LL++ ++R G + + DCE++S+ +S + +VENI + RLEV SPGIDRP+ +++F R Sbjct: 37 LLRVTIDRV-GGVRIEDCEQVSRQLSRVYEVENI--DYKRLEVGSPGIDRPLRNEAEFRR 93 Query: 112 WNGH 115 + G Sbjct: 94 FAGE 97 >gi|167465393|ref|ZP_02330482.1| hypothetical protein Plarl_23005 [Paenibacillus larvae subsp. larvae BRL-230010] Length = 140 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 71/143 (49%), Gaps = 9/143 (6%) Query: 33 IEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYR 91 + E F V I ++E N L+++V++ +G + + DC +S+ +S LD ++ I Y Sbjct: 4 LTENGFELVDIEYVKEGSNWFLRVYVDKLEGGIDIEDCGRISEYLSAKLDEKDPIPTAYF 63 Query: 92 LEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRG 151 LEVSSPG +RP+ + D + G V + ++ G+++ ++ K+ Sbjct: 64 LEVSSPGAERPLKKPQDIAKSVGKHVFITTYEPVDNAKEFEGELLSFDGETLVVKTAKK- 122 Query: 152 EKDMNELQIAISFDSLLSARLIV 174 + +I ++ + SARL + Sbjct: 123 -------KSSIPYEKVASARLAI 138 >gi|268678891|ref|YP_003303322.1| hypothetical protein Sdel_0250 [Sulfurospirillum deleyianum DSM 6946] gi|268616922|gb|ACZ11287.1| protein of unknown function DUF150 [Sulfurospirillum deleyianum DSM 6946] Length = 142 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 13/120 (10%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 + +I++ +G + L C E+S+ +SPI DVE +EG Y EVSSPGI+R +++ F Sbjct: 31 IFRIYITSKEG-INLDKCAEVSRILSPIFDVEPPLEGEYLFEVSSPGIERKLLKPEHFSV 89 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 G V ++ +K+K IG + G + + R E ++ E I+ D + AR Sbjct: 90 SVGEKVKIKL----KNKEKFIGILEGFANNTL----QVRVENEVKE----IALDDIEKAR 137 >gi|304404289|ref|ZP_07385951.1| protein of unknown function DUF150 [Paenibacillus curdlanolyticus YK9] gi|304347267|gb|EFM13099.1| protein of unknown function DUF150 [Paenibacillus curdlanolyticus YK9] Length = 153 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 59/107 (55%), Gaps = 3/107 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +++P I+E F V + ++E N L+IFV+++ G + + +C +S+ +S LD + Sbjct: 10 VEEMVKPFIDENGFELVDVEYVKEGSNWFLRIFVDKE-GGIDIDECGRVSEYLSEQLDQK 68 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNG-HVVACEIVLSSGDKQ 129 + I Y LEVSSPG +RP+ + D + G HV G K+ Sbjct: 69 DPITDAYFLEVSSPGAERPLKKPEDVHKAVGKHVYMTTYEPVHGQKE 115 >gi|299139240|ref|ZP_07032416.1| protein of unknown function DUF150 [Acidobacterium sp. MP5ACTX8] gi|298598920|gb|EFI55082.1| protein of unknown function DUF150 [Acidobacterium sp. MP5ACTX8] Length = 193 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 67/134 (50%), Gaps = 7/134 (5%) Query: 47 EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEG-HYRLEVSSPGIDRPMVR 105 EE L + VE G +T DC ++ +LDVE++I G Y LE SSPG++R +++ Sbjct: 59 EEAGLPKGVPVETLSG-VTHEDCANFARDFGTVLDVEDLIPGAEYTLETSSPGLERKLLK 117 Query: 106 KSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE----KEK-RGEKDMNELQI 160 +D+ R+ G +V + + G+++ T L+ K+K + +K + + Sbjct: 118 AADYERFKGSLVKVQTFSPVDSNRHFTGRLVAFEGTNLTLDLAAVKQKGKAKKTLTAQTV 177 Query: 161 AISFDSLLSARLIV 174 IS ++ A L+ Sbjct: 178 EISLANVEKANLVA 191 >gi|317498936|ref|ZP_07957219.1| hypothetical protein HMPREF0996_02203 [Lachnospiraceae bacterium 5_1_63FAA] gi|316893769|gb|EFV15968.1| hypothetical protein HMPREF0996_02203 [Lachnospiraceae bacterium 5_1_63FAA] Length = 95 Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 51/81 (62%), Gaps = 2/81 (2%) Query: 28 VIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 ++ P+IE +F V + ++E N L+++ +++ G + + DC +S+++ LD E+ I Sbjct: 14 LVLPIIEANNFELVDVEYVKEGANWYLRVYADKE-GGIAIDDCVLISRSLEEKLDAEDFI 72 Query: 87 EGHYRLEVSSPGIDRPMVRKS 107 E Y LEVSSPG+ RP+ +K Sbjct: 73 EDAYILEVSSPGLGRPLKKKK 93 >gi|328957407|ref|YP_004374793.1| hypothetical protein CAR_c10840 [Carnobacterium sp. 17-4] gi|328673731|gb|AEB29777.1| hypothetical protein CAR_c10840 [Carnobacterium sp. 17-4] Length = 154 Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 57/96 (59%), Gaps = 4/96 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +++P++E F I ++E KN L++++++ +G + L DC +S+ IS +D Sbjct: 5 VTEIVKPIVERNQFELEDIEFIKEGKNWFLRVYIDKPEG-IDLEDCALVSEQISEHMDKI 63 Query: 84 NI--IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 N I Y LEVSSPG +RP+ ++ D++ G + Sbjct: 64 NPDPIPQAYFLEVSSPGAERPLKKEEDYVNAVGEYI 99 >gi|297156813|gb|ADI06525.1| hypothetical protein SBI_03404 [Streptomyces bingchenggensis BCW-1] Length = 180 Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 6/99 (6%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGH-YRLEVSSPGIDRPMVRKS 107 K +L+I V+ DDG + L C ELS+AIS LD + + H Y LEV+SPG DRP+ Sbjct: 34 KRRVLRIVVDSDDG-VQLDACAELSRAISQTLDDTDAMGRHPYVLEVTSPGADRPLTEPR 92 Query: 108 DFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE 146 + R G ++ + + +L+ +I + G +E Sbjct: 93 HYRRAAGRLMKARL----AEGGELVARITAVDDEGLDVE 127 >gi|149926273|ref|ZP_01914535.1| hypothetical protein LMED105_02033 [Limnobacter sp. MED105] gi|149825091|gb|EDM84303.1| hypothetical protein LMED105_02033 [Limnobacter sp. MED105] Length = 171 Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 56/96 (58%), Gaps = 3/96 (3%) Query: 48 EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKS 107 E N LL+I ++ G +T+ DCE++S ++ + VEN+ + RLE+SSPG+DR + RK Sbjct: 45 EGNGLLRIMIDSPTG-VTVEDCEKVSHQLTHLFTVENV--NYERLEISSPGVDRVLRRKK 101 Query: 108 DFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 DF R+ V+ + + ++++ G + E + Sbjct: 102 DFERFLDQEVSLKFKRAINNQKQFKGVLQKGKEQAW 137 >gi|311104986|ref|YP_003977839.1| hypothetical protein AXYL_01790 [Achromobacter xylosoxidans A8] gi|310759675|gb|ADP15124.1| hypothetical protein AXYL_01790 [Achromobacter xylosoxidans A8] Length = 182 Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 74/137 (54%), Gaps = 25/137 (18%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 LL++ ++R G + + DCE++S+ +S + +VEN+ + R+EV SPG+DRP+ +++F R Sbjct: 44 LLRVTIDRV-GGVRIEDCEQVSRQLSRVFEVENV--DYKRMEVGSPGVDRPLRNEAEFRR 100 Query: 112 WNGHVVACEIVLSSG-DKQKLIGKIM--------------GTSETGFFLEKEKRGEKDMN 156 + G + EI L D +K+ I+ G +T F LE E + N Sbjct: 101 FAGERI--EIKLREALDGRKVFAGILTMPEDDAAASDAAAGMQKTVFGLEFEAK----KN 154 Query: 157 ELQI-AISFDSLLSARL 172 E+Q+ + D + A+L Sbjct: 155 EIQVLNFTVDDIERAKL 171 >gi|157738248|ref|YP_001490932.1| hypothetical protein Abu_2045 [Arcobacter butzleri RM4018] gi|166980266|sp|A8EWD9|RIMP_ARCB4 RecName: Full=Ribosome maturation factor rimP gi|157700102|gb|ABV68262.1| conserved hypothetical protein (DUF150 domain protein) [Arcobacter butzleri RM4018] Length = 142 Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 43/117 (36%), Positives = 62/117 (52%), Gaps = 14/117 (11%) Query: 29 IQPVIEEMSFRSVQISLLEE--KNLL-LQIFVERDDGNMTLRDCEELSQAISPILDVENI 85 I+ +E + + IS L E KN+ + I E G + L C E+S+ +SPILDVE Sbjct: 7 IKLTVESLGAKLYDISTLREHDKNIFRVSITCE---GGVNLDKCAEISRMLSPILDVEEP 63 Query: 86 IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV-----ACEIV---LSSGDKQKLIGK 134 + G Y LEVSSPGI+R + + FL G V A E+ L D++K++ K Sbjct: 64 MNGEYLLEVSSPGIERKLKKVDHFLASIGEKVKVKNFATEVFKGELICADEEKIVIK 120 >gi|167570130|ref|ZP_02363004.1| hypothetical protein BoklC_09816 [Burkholderia oklahomensis C6786] Length = 153 Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 68/123 (55%), Gaps = 8/123 (6%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 ++ +++++ G +T+ DCE++++ + +L VENI + RLEVSSPG+DRP+ + +DF R Sbjct: 28 MVCVYIDQPAG-ITIDDCEKVTRQLQHVLTVENI--DYERLEVSSPGLDRPLKKLADFTR 84 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKE-KRGEKDMNELQIAISFDSLLSA 170 + G + ++ G + + LE E K+GE M + +A + A Sbjct: 85 FAGSEAVITLKKPLDGRKTYRGILYAPNGETIGLEFERKKGEAAMLDFTLA----DIDKA 140 Query: 171 RLI 173 RLI Sbjct: 141 RLI 143 >gi|257869191|ref|ZP_05648844.1| conserved hypothetical protein [Enterococcus gallinarum EG2] gi|257803355|gb|EEV32177.1| conserved hypothetical protein [Enterococcus gallinarum EG2] Length = 157 Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 81/150 (54%), Gaps = 22/150 (14%) Query: 31 PVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDV--ENIIE 87 P++E +F V++ ++E K+ L++F++++ G + + +C +S+ +S LD + I Sbjct: 14 PILEAQNFELVEVEFVKEGKSWFLRVFIDKE-GGIDIEECAFVSEQLSDKLDACDPDPIP 72 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVV------------ACEIVLSSGDKQKLIGKI 135 Y LEVSSPG +RP+ ++ D+ R G + E L S D+++L+ KI Sbjct: 73 QAYFLEVSSPGAERPLKKEEDYHRAVGEYIHLSLYQPVEGEKQFEGFLQSFDEEQLVIKI 132 Query: 136 -MGTSETGFFLEKEKRGEKDMNELQIAISF 164 + T E +E+ K++ + ++AI F Sbjct: 133 RIKTREKELTIER-----KNIAKARLAIQF 157 >gi|322436507|ref|YP_004218719.1| protein of unknown function DUF150 [Acidobacterium sp. MP5ACTX9] gi|321164234|gb|ADW69939.1| protein of unknown function DUF150 [Acidobacterium sp. MP5ACTX9] Length = 207 Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 1/75 (1%) Query: 64 MTLRDCEELSQAISPILDVENIIEG-HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV 122 +T DC + ++ +LDVE+ I G Y LEVSSPG++R + + +DF R++G ++ + Sbjct: 86 VTHEDCADFARDFGTVLDVEDTIPGAEYTLEVSSPGLERKLAKPADFARFSGFLIKLQTF 145 Query: 123 LSSGDKQKLIGKIMG 137 + + G++ G Sbjct: 146 TAVDGNRHFQGRLTG 160 >gi|325569919|ref|ZP_08145913.1| protein of hypothetical function DUF150 [Enterococcus casseliflavus ATCC 12755] gi|325157042|gb|EGC69210.1| protein of hypothetical function DUF150 [Enterococcus casseliflavus ATCC 12755] Length = 170 Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 62/106 (58%), Gaps = 5/106 (4%) Query: 28 VIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDV--EN 84 ++ P+++ F V++ ++E KN L++F++++ G + + +C +S+ +S LD + Sbjct: 24 IVTPILDAQKFELVEVEFVKEGKNWFLRVFIDKE-GGIDIEECAFVSEQLSEQLDQCEPD 82 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS-SGDKQ 129 I Y LEVSSPG +RP+ +++D+ R G + + G+KQ Sbjct: 83 PIPQAYFLEVSSPGAERPLKKEADYQRAVGEYIHVSLYQPIDGEKQ 128 >gi|184155205|ref|YP_001843545.1| hypothetical protein LAF_0729 [Lactobacillus fermentum IFO 3956] gi|227514705|ref|ZP_03944754.1| protein of hypothetical function DUF150 [Lactobacillus fermentum ATCC 14931] gi|260662295|ref|ZP_05863191.1| UPF0090 protein [Lactobacillus fermentum 28-3-CHN] gi|259585802|sp|B2GBN3|RIMP_LACF3 RecName: Full=Ribosome maturation factor rimP gi|183226549|dbj|BAG27065.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956] gi|227086909|gb|EEI22221.1| protein of hypothetical function DUF150 [Lactobacillus fermentum ATCC 14931] gi|260553678|gb|EEX26570.1| UPF0090 protein [Lactobacillus fermentum 28-3-CHN] Length = 159 Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 58/90 (64%), Gaps = 4/90 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 ++++++P++ E +F ++ ++E K+ L+++++++ G +TL DC +S +S LD Sbjct: 10 VTALVEPILAEHNFELYEVEFVQEAKSWYLRVYIDKE-GGITLEDCALVSDQLSEQLDSA 68 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 + I Y LEVSSPG +RP+ ++ D+ R Sbjct: 69 DPDPIPQAYFLEVSSPGAERPLKKEVDYQR 98 >gi|227537267|ref|ZP_03967316.1| protein of hypothetical function DUF150 [Sphingobacterium spiritivorum ATCC 33300] gi|227242871|gb|EEI92886.1| protein of hypothetical function DUF150 [Sphingobacterium spiritivorum ATCC 33300] Length = 156 Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 60/103 (58%), Gaps = 5/103 (4%) Query: 43 ISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRP 102 +S+ + N +L+I V+ D G + + DC ++S+ + L+ EN+IE YRLEVSSPGID P Sbjct: 26 VSIKMQGNGVLEILVDGDSG-IAIDDCVKISRHVGFHLEEENVIETAYRLEVSSPGIDSP 84 Query: 103 MVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFL 145 +V +R + + + + + +K GK++ +E+ + Sbjct: 85 LV----LIRQYEKNIGRNVRVKNHEGEKREGKLLDVTESAITI 123 >gi|254876276|ref|ZP_05248986.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842297|gb|EET20711.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 152 Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 52/81 (64%), Gaps = 1/81 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L D+ +++P+ ++ + I ++ L ++IF++ ++G +++ DC+ +S+ +S I Sbjct: 4 LLDDLYEIVEPITADLGYILWGIEVVGAGKLTIRIFIDHENG-VSVDDCQVVSKEVSAIF 62 Query: 81 DVENIIEGHYRLEVSSPGIDR 101 DVE+ I Y LEVSSPG++R Sbjct: 63 DVEDPISDKYVLEVSSPGMNR 83 >gi|282898606|ref|ZP_06306594.1| protein of unknown function DUF150 [Cylindrospermopsis raciborskii CS-505] gi|281196474|gb|EFA71383.1| protein of unknown function DUF150 [Cylindrospermopsis raciborskii CS-505] Length = 164 Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 63/131 (48%), Gaps = 1/131 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L I + P+ E+ V + ++ +L++ + + +L DCE++S+A+ Sbjct: 16 LVPQIIDLATPLAAELGLEVVGMVFHTNQRPPILRVDIRNPQQDTSLNDCEKMSRALETS 75 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD II Y LEVSSPGI R + +F+ + G V +++ G+++ Sbjct: 76 LDAAEIILDTYVLEVSSPGISRELATDREFISFKGFPVVVSTCDPDDGEKEWKGQLIRRD 135 Query: 140 ETGFFLEKEKR 150 ET +L ++ R Sbjct: 136 ETKIYLNQKGR 146 >gi|254458920|ref|ZP_05072343.1| conserved hypothetical protein [Campylobacterales bacterium GD 1] gi|207084191|gb|EDZ61480.1| conserved hypothetical protein [Campylobacterales bacterium GD 1] Length = 149 Score = 54.3 bits (129), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 79/157 (50%), Gaps = 17/157 (10%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK----NLLLQIFVERDDGNMTLRDCEELSQ 74 M L DI+S+++ V E+ + + +S +E +++ + V+ ++L C L+ Sbjct: 1 MSLESDINSLVKSVDLEL-YDATVVSENDETIYRISVISKEIVDGKRSGISLDACVNLTH 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 ISP+LDV + G YRLEV SPGI+R + FL G I L +K+K GK Sbjct: 60 LISPLLDVTPPVSGDYRLEVGSPGIERKLSSLKHFLLSIGE----NISLLLTNKEKYKGK 115 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 ++ ++ FL ++ + ++ I F +L A+ Sbjct: 116 LVKVKDSKIFL--------NVGDEKVEIDFYEILKAK 144 >gi|327398876|ref|YP_004339745.1| Ribosome maturation factor rimP [Hippea maritima DSM 10411] gi|327181505|gb|AEA33686.1| Ribosome maturation factor rimP [Hippea maritima DSM 10411] Length = 140 Score = 54.3 bits (129), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 4/83 (4%) Query: 32 VIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYR 91 V+E + + I L ++K + I++++ G +++ DCE S+ IS +LDV++ G Y Sbjct: 13 VVESLGYSVYDIELTQKK---ITIYIDKP-GGVSIDDCELASRNISALLDVKDPFSGSYT 68 Query: 92 LEVSSPGIDRPMVRKSDFLRWNG 114 LEVSSPGI+R + K F+ G Sbjct: 69 LEVSSPGINRKLKTKEHFMAAIG 91 >gi|167627170|ref|YP_001677670.1| hypothetical protein Fphi_0946 [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|241667732|ref|ZP_04755310.1| hypothetical protein FphipA2_03111 [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|226696044|sp|B0TWR1|RIMP_FRAP2 RecName: Full=Ribosome maturation factor rimP gi|167597171|gb|ABZ87169.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 150 Score = 54.3 bits (129), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 52/81 (64%), Gaps = 1/81 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L D+ +++P+ ++ + I ++ L ++IF++ ++G +++ DC+ +S+ +S I Sbjct: 2 LLDDLYEIVEPITADLGYILWGIEVVGAGKLTIRIFIDHENG-VSVDDCQVVSKEVSAIF 60 Query: 81 DVENIIEGHYRLEVSSPGIDR 101 DVE+ I Y LEVSSPG++R Sbjct: 61 DVEDPISDKYVLEVSSPGMNR 81 >gi|295836232|ref|ZP_06823165.1| conserved hypothetical protein [Streptomyces sp. SPB74] gi|295825917|gb|EFG64551.1| conserved hypothetical protein [Streptomyces sp. SPB74] Length = 183 Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 6/99 (6%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILD-VENIIEGHYRLEVSSPGIDRPMVRKS 107 + +LQI V+ D G ++L C ELS+ IS +LD + + E Y LEV+SPG DRP+ Sbjct: 34 RRRVLQIVVDGDTG-VSLDTCAELSREISTVLDDTDAMGENEYVLEVTSPGADRPLSAHR 92 Query: 108 DFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE 146 ++R G +V ++ + +L+ +++ + G LE Sbjct: 93 HYVRATGRLVRFQL----AEGGELVARLLKADDAGLDLE 127 >gi|237749787|ref|ZP_04580267.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] gi|229374652|gb|EEO25043.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] Length = 167 Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 35/99 (35%), Positives = 58/99 (58%), Gaps = 2/99 (2%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + D+ I+ +I + I LL+E ++++L+I + + +G ++L DCE +S I+P+ Sbjct: 2 ITQDLHDKIESLITQKGLELYDIELLKENESMILRISIFKKEG-ISLDDCENISTLIAPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVA 118 LDVE Y LEVSSPG++R + + FL G VA Sbjct: 61 LDVELSDLEAYHLEVSSPGVERNLKKPKHFLCSIGQKVA 99 >gi|315636536|ref|ZP_07891772.1| conserved hypothetical protein [Arcobacter butzleri JV22] gi|315479185|gb|EFU69882.1| conserved hypothetical protein [Arcobacter butzleri JV22] Length = 142 Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 43/117 (36%), Positives = 62/117 (52%), Gaps = 14/117 (11%) Query: 29 IQPVIEEMSFRSVQISLLEE--KNLL-LQIFVERDDGNMTLRDCEELSQAISPILDVENI 85 I+ +E + + IS L E KN+ + I E G + L C E+S+ +SPILDVE Sbjct: 7 IKLTVESLGAKLYDISTLREHDKNIFRVSITCE---GGVNLDKCAEISRMLSPILDVEEP 63 Query: 86 IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV-----ACEIV---LSSGDKQKLIGK 134 + G Y LEVSSPGI+R + + FL G V A E+ L D++K++ K Sbjct: 64 MNGEYILEVSSPGIERKLKKVDHFLASIGEKVKVKNFATEVFKGELICADEEKIVIK 120 >gi|238027586|ref|YP_002911817.1| hypothetical protein bglu_1g20040 [Burkholderia glumae BGR1] gi|237876780|gb|ACR29113.1| Hypothetical protein bglu_1g20040 [Burkholderia glumae BGR1] Length = 153 Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 70/123 (56%), Gaps = 8/123 (6%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 +L +++++ G +++ DCE++++ + +L VENI + RLEVSSPG+DRP+ + +DF R Sbjct: 28 MLCVYIDQPAG-ISIDDCEKVTRQLQHVLTVENI--DYERLEVSSPGLDRPLKKLADFER 84 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKE-KRGEKDMNELQIAISFDSLLSA 170 + G ++ + ++ G + + LE E K+GE M + +A + A Sbjct: 85 FAGSEISVTLKKPLEGRKTYRGILHAPNGETIGLEFEMKKGEAAMLDFTLA----DIDKA 140 Query: 171 RLI 173 RLI Sbjct: 141 RLI 143 >gi|282898465|ref|ZP_06306455.1| Protein of unknown function DUF150 [Raphidiopsis brookii D9] gi|281196631|gb|EFA71537.1| Protein of unknown function DUF150 [Raphidiopsis brookii D9] Length = 163 Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 52/99 (52%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 +L++ + + +L DCE++S+A+ LD II Y LEVSSPGI R + +F+ Sbjct: 47 ILRVDIRNPQQDTSLNDCEKMSRALESYLDAAGIIPDTYVLEVSSPGISRQLETDREFIS 106 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKR 150 + G V +++ G+++ ET +L ++ R Sbjct: 107 FKGFPVVVSTCDPDDGEKEWKGQLIRRDETKIYLNQKGR 145 >gi|167587340|ref|ZP_02379728.1| hypothetical protein BuboB_18484 [Burkholderia ubonensis Bu] Length = 152 Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 46/63 (73%), Gaps = 3/63 (4%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 +L I++++ G ++L DCE++++ + +L VENI + RLEVSSPG+DRP+ + +DF R Sbjct: 28 MLCIYIDQPAG-ISLDDCEKVTRQLQHVLTVENI--DYERLEVSSPGLDRPLKKLADFER 84 Query: 112 WNG 114 + G Sbjct: 85 FAG 87 >gi|53719534|ref|YP_108520.1| hypothetical protein BPSL1920 [Burkholderia pseudomallei K96243] gi|53724823|ref|YP_102762.1| hypothetical protein BMA1063 [Burkholderia mallei ATCC 23344] gi|67641343|ref|ZP_00440123.1| conserved hypothetical protein [Burkholderia mallei GB8 horse 4] gi|83720636|ref|YP_443083.1| hypothetical protein BTH_I2566 [Burkholderia thailandensis E264] gi|121601076|ref|YP_992839.1| hypothetical protein BMASAVP1_A1509 [Burkholderia mallei SAVP1] gi|124386071|ref|YP_001026182.1| hypothetical protein BMA10229_A0177 [Burkholderia mallei NCTC 10229] gi|126439674|ref|YP_001058777.1| hypothetical protein BURPS668_1738 [Burkholderia pseudomallei 668] gi|126448900|ref|YP_001080548.1| hypothetical protein BMA10247_0989 [Burkholderia mallei NCTC 10247] gi|126452322|ref|YP_001066029.1| hypothetical protein BURPS1106A_1760 [Burkholderia pseudomallei 1106a] gi|134282401|ref|ZP_01769106.1| conserved hypothetical protein [Burkholderia pseudomallei 305] gi|167004350|ref|ZP_02270108.1| conserved hypothetical protein [Burkholderia mallei PRL-20] gi|167562941|ref|ZP_02355857.1| hypothetical protein BoklE_10300 [Burkholderia oklahomensis EO147] gi|167582088|ref|ZP_02374962.1| hypothetical protein BthaT_28352 [Burkholderia thailandensis TXDOH] gi|167620249|ref|ZP_02388880.1| hypothetical protein BthaB_28340 [Burkholderia thailandensis Bt4] gi|167719820|ref|ZP_02403056.1| hypothetical protein BpseD_12440 [Burkholderia pseudomallei DM98] gi|167738821|ref|ZP_02411595.1| hypothetical protein Bpse14_12188 [Burkholderia pseudomallei 14] gi|167816042|ref|ZP_02447722.1| hypothetical protein Bpse9_12932 [Burkholderia pseudomallei 91] gi|167824418|ref|ZP_02455889.1| hypothetical protein Bpseu9_12158 [Burkholderia pseudomallei 9] gi|167836823|ref|ZP_02463706.1| hypothetical protein Bpse38_10070 [Burkholderia thailandensis MSMB43] gi|167845950|ref|ZP_02471458.1| hypothetical protein BpseB_11725 [Burkholderia pseudomallei B7210] gi|167894527|ref|ZP_02481929.1| hypothetical protein Bpse7_12319 [Burkholderia pseudomallei 7894] gi|167902932|ref|ZP_02490137.1| hypothetical protein BpseN_11790 [Burkholderia pseudomallei NCTC 13177] gi|167919192|ref|ZP_02506283.1| hypothetical protein BpseBC_11610 [Burkholderia pseudomallei BCC215] gi|217423492|ref|ZP_03454993.1| conserved hypothetical protein [Burkholderia pseudomallei 576] gi|226199708|ref|ZP_03795261.1| conserved hypothetical protein [Burkholderia pseudomallei Pakistan 9] gi|237812040|ref|YP_002896491.1| hypothetical protein GBP346_A1782 [Burkholderia pseudomallei MSHR346] gi|242317839|ref|ZP_04816855.1| conserved hypothetical protein [Burkholderia pseudomallei 1106b] gi|254178698|ref|ZP_04885353.1| conserved hypothetical protein [Burkholderia mallei ATCC 10399] gi|254179982|ref|ZP_04886581.1| conserved hypothetical protein [Burkholderia pseudomallei 1655] gi|254188606|ref|ZP_04895117.1| conserved hypothetical protein [Burkholderia pseudomallei Pasteur 52237] gi|254197760|ref|ZP_04904182.1| conserved hypothetical protein [Burkholderia pseudomallei S13] gi|254199710|ref|ZP_04906076.1| conserved hypothetical protein [Burkholderia mallei FMH] gi|254206032|ref|ZP_04912384.1| conserved hypothetical protein [Burkholderia mallei JHU] gi|254297817|ref|ZP_04965270.1| conserved hypothetical protein [Burkholderia pseudomallei 406e] gi|254358406|ref|ZP_04974679.1| conserved hypothetical protein [Burkholderia mallei 2002721280] gi|257139312|ref|ZP_05587574.1| hypothetical protein BthaA_08929 [Burkholderia thailandensis E264] gi|81379645|sp|Q63TP6|RIMP_BURPS RecName: Full=Ribosome maturation factor rimP gi|81605125|sp|Q62KK7|RIMP_BURMA RecName: Full=Ribosome maturation factor rimP gi|123536573|sp|Q2SVG6|RIMP_BURTA RecName: Full=Ribosome maturation factor rimP gi|166980214|sp|A3N8V6|RIMP_BURP6 RecName: Full=Ribosome maturation factor rimP gi|166980223|sp|A3NUK8|RIMP_BURP0 RecName: Full=Ribosome maturation factor rimP gi|166987486|sp|A2S2L3|RIMP_BURM9 RecName: Full=Ribosome maturation factor rimP gi|166990761|sp|A1V3N6|RIMP_BURMS RecName: Full=Ribosome maturation factor rimP gi|166990846|sp|A3MJW2|RIMP_BURM7 RecName: Full=Ribosome maturation factor rimP gi|52209948|emb|CAH35920.1| conserved hypothetical protein [Burkholderia pseudomallei K96243] gi|52428246|gb|AAU48839.1| conserved hypothetical protein [Burkholderia mallei ATCC 23344] gi|83654461|gb|ABC38524.1| Uncharacterized BCR, YhbC family COG0779 superfamily [Burkholderia thailandensis E264] gi|121229886|gb|ABM52404.1| conserved hypothetical protein [Burkholderia mallei SAVP1] gi|124294091|gb|ABN03360.1| conserved hypothetical protein [Burkholderia mallei NCTC 10229] gi|126219167|gb|ABN82673.1| conserved hypothetical protein [Burkholderia pseudomallei 668] gi|126225964|gb|ABN89504.1| conserved hypothetical protein [Burkholderia pseudomallei 1106a] gi|126241770|gb|ABO04863.1| conserved hypothetical protein [Burkholderia mallei NCTC 10247] gi|134246439|gb|EBA46528.1| conserved hypothetical protein [Burkholderia pseudomallei 305] gi|147749306|gb|EDK56380.1| conserved hypothetical protein [Burkholderia mallei FMH] gi|147753475|gb|EDK60540.1| conserved hypothetical protein [Burkholderia mallei JHU] gi|148027533|gb|EDK85554.1| conserved hypothetical protein [Burkholderia mallei 2002721280] gi|157806885|gb|EDO84055.1| conserved hypothetical protein [Burkholderia pseudomallei 406e] gi|157936285|gb|EDO91955.1| conserved hypothetical protein [Burkholderia pseudomallei Pasteur 52237] gi|160699737|gb|EDP89707.1| conserved hypothetical protein [Burkholderia mallei ATCC 10399] gi|169654501|gb|EDS87194.1| conserved hypothetical protein [Burkholderia pseudomallei S13] gi|184210522|gb|EDU07565.1| conserved hypothetical protein [Burkholderia pseudomallei 1655] gi|217393350|gb|EEC33371.1| conserved hypothetical protein [Burkholderia pseudomallei 576] gi|225928294|gb|EEH24328.1| conserved hypothetical protein [Burkholderia pseudomallei Pakistan 9] gi|237503609|gb|ACQ95927.1| conserved hypothetical protein [Burkholderia pseudomallei MSHR346] gi|238522260|gb|EEP85705.1| conserved hypothetical protein [Burkholderia mallei GB8 horse 4] gi|242141078|gb|EES27480.1| conserved hypothetical protein [Burkholderia pseudomallei 1106b] gi|243060318|gb|EES42504.1| conserved hypothetical protein [Burkholderia mallei PRL-20] Length = 153 Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 68/123 (55%), Gaps = 8/123 (6%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 ++ +++++ G +T+ DCE++++ + +L VENI + RLEVSSPG+DRP+ + +DF R Sbjct: 28 MVCVYIDQPAG-ITIDDCEKVTRQLQHVLTVENI--DYERLEVSSPGLDRPLKKLADFTR 84 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKE-KRGEKDMNELQIAISFDSLLSA 170 + G + ++ G + + LE E K+GE M + +A + A Sbjct: 85 FAGSEAVITLKKPLDGRKTYRGILHAPNGETIGLEFERKKGEAAMLDFTLA----DIDKA 140 Query: 171 RLI 173 RLI Sbjct: 141 RLI 143 >gi|89098597|ref|ZP_01171479.1| hypothetical protein B14911_00370 [Bacillus sp. NRRL B-14911] gi|89086559|gb|EAR65678.1| hypothetical protein B14911_00370 [Bacillus sp. NRRL B-14911] Length = 156 Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 82/152 (53%), Gaps = 6/152 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ P+++E++ V I ++E K L++F++++ G + + +C +S+ +S LD Sbjct: 8 VEELVTPIVDELNLELVDIEYVKEGKEWFLRVFIDKEQG-VDIEECGLVSERLSEKLDEL 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I +Y LEVSSPG +RP+ ++ D+ G V + ++ GK+ T G Sbjct: 67 DPIPYNYFLEVSSPGAERPLKKEKDYKSAIGKNVLIKTYEPIDGEKTFEGKL--TQFDGE 124 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + E R + + I+I ++ + +ARL VT Sbjct: 125 TVTVEVRVKTRIK--TISIPYEKVANARLAVT 154 >gi|76809648|ref|YP_333312.1| hypothetical protein BURPS1710b_1913 [Burkholderia pseudomallei 1710b] gi|167911168|ref|ZP_02498259.1| hypothetical protein Bpse112_11783 [Burkholderia pseudomallei 112] gi|254259962|ref|ZP_04951016.1| conserved hypothetical protein [Burkholderia pseudomallei 1710a] gi|91208395|sp|Q3JSZ1|RIMP_BURP1 RecName: Full=Ribosome maturation factor rimP gi|76579101|gb|ABA48576.1| conserved hypothetical protein [Burkholderia pseudomallei 1710b] gi|254218651|gb|EET08035.1| conserved hypothetical protein [Burkholderia pseudomallei 1710a] Length = 153 Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 46/63 (73%), Gaps = 3/63 (4%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 ++ +++++ G +T+ DCE++++ + +L VENI + RLEVSSPG+DRP+ + +DF R Sbjct: 28 MVCVYIDQPAG-ITIDDCEKVTRQLQHVLTVENI--DYERLEVSSPGLDRPLKKLADFTR 84 Query: 112 WNG 114 + G Sbjct: 85 FAG 87 >gi|302380608|ref|ZP_07269073.1| conserved hypothetical protein [Finegoldia magna ACS-171-V-Col3] gi|302311551|gb|EFK93567.1| conserved hypothetical protein [Finegoldia magna ACS-171-V-Col3] Length = 154 Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 65/124 (52%), Gaps = 3/124 (2%) Query: 29 IQPVIEE--MSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 + P+I++ + F V+ S KN+L ++E+DDG +++ DCE ++ IS LD + I Sbjct: 14 LSPLIKDTGIEFYDVEYSNNNGKNIL-TFYIEKDDGLISIDDCELINNKISDKLDEIDPI 72 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE 146 Y LE++S I P R DF + G+VV + +++ G + ++ LE Sbjct: 73 SDPYYLEIASVDITTPFTRDKDFKKNLGNVVIVNLYQKLDSQKEFKGILKDFNDKEISLE 132 Query: 147 KEKR 150 EK+ Sbjct: 133 LEKK 136 >gi|319957625|ref|YP_004168888.1| hypothetical protein Nitsa_1895 [Nitratifractor salsuginis DSM 16511] gi|319420029|gb|ADV47139.1| protein of unknown function DUF150 [Nitratifractor salsuginis DSM 16511] Length = 146 Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 6/114 (5%) Query: 47 EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRK 106 E + ++++ +D G + L C ++S +SP+LDV + G Y LEVSSPGI+R + + Sbjct: 26 ENDQTIYRVYITKD-GGVDLDTCADISNDLSPLLDVHPPVGGKYFLEVSSPGIERTLKKP 84 Query: 107 SDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQI 160 F G V +I +KL G + E G L + K GE + QI Sbjct: 85 RHFQSAVGERVKLKIAGG----EKLRGILESADEEGIIL-RNKEGEHRYSYPQI 133 >gi|332976701|gb|EGK13539.1| hypothetical protein HMPREF9373_1208 [Psychrobacter sp. 1501(2011)] Length = 166 Score = 53.9 bits (128), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 27/140 (19%) Query: 52 LLQIFVER------DDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVR 105 LL+I++E D +T+ +C ++ +S +L+V + I G Y LEVSSPG+DRP Sbjct: 38 LLRIYIESLPEDKAADKQVTIENCAAVTHQVSGVLEVHDPIAGEYVLEVSSPGLDRPFFA 97 Query: 106 KSDFLRWNGHVVACEIVLSSG----DKQKLIGKIMGTSETGFFLEKEKRGEKDMNEL--- 158 + G + ++ + G ++K+ GK+ E+ G+K ++ + Sbjct: 98 PEQMTDYVGQTLNLRLIQAVGAGSSKRRKVTGKL------------EQLGDKQLSIVTPE 145 Query: 159 --QIAISFDSLLSARLIVTD 176 Q I+ D++ A LI D Sbjct: 146 GEQFDIALDNIDKANLIYQD 165 >gi|259016311|sp|Q7NFN6|RIMP_GLOVI RecName: Full=Ribosome maturation factor rimP Length = 156 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 63/114 (55%), Gaps = 2/114 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 ++++ +PV E++ + V ++ K L++ + L DCE++S+A+ +LD Sbjct: 10 VTALAEPVAEQLGLQLVAVAYQTHTKPATLRVDIRHPTEGTGLDDCEKMSRALEALLDTR 69 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 +++I G Y LEVSSPG++R + +F+ + G V + K++ G+++ Sbjct: 70 DDLIIGAYNLEVSSPGVERVLTTDREFMAFRGFPVMVKTFGPVDGKKQWEGRLL 123 >gi|78776877|ref|YP_393192.1| hypothetical protein Suden_0678 [Sulfurimonas denitrificans DSM 1251] gi|91208367|sp|Q30SS4|RIMP_SULDN RecName: Full=Ribosome maturation factor rimP gi|78497417|gb|ABB43957.1| Protein of unknown function DUF150 [Sulfurimonas denitrificans DSM 1251] Length = 149 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 12/108 (11%) Query: 64 MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVL 123 ++L +C LS+ ISP+LDV + G YRLEV +PGI+R + F+ G VA L Sbjct: 49 VSLDECVHLSRLISPLLDVTPPMSGEYRLEVGTPGIERKVSTLKQFVLSIGERVA----L 104 Query: 124 SSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 + K+KL G ++ E+ +L D++ ++ + F + A+ Sbjct: 105 TLKSKEKLKGLLLRVEESNIYL--------DVDAEEVCVEFAQISKAK 144 >gi|255319714|ref|ZP_05360922.1| conserved hypothetical protein [Acinetobacter radioresistens SK82] gi|262380004|ref|ZP_06073159.1| UPF0090 protein [Acinetobacter radioresistens SH164] gi|255303243|gb|EET82452.1| conserved hypothetical protein [Acinetobacter radioresistens SK82] gi|262298198|gb|EEY86112.1| UPF0090 protein [Acinetobacter radioresistens SH164] Length = 174 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 18/132 (13%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVER-----------DDGNMT------L 66 + +I P +E I L + K L++IF+++ +DG + + Sbjct: 10 LHDLIAPAVEACDVELWGIEFLPQGKRSLVRIFIDKPVDENAEPVLNEDGELEQGRGIGV 69 Query: 67 RDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 +DC ++Q + ILDV + I G Y LEVSSPG DRP + + G VA ++ + Sbjct: 70 QDCVRVTQQVGAILDVHDPISGEYSLEVSSPGWDRPFFQLEQMSAYIGQQVALRLISAVD 129 Query: 127 DKQKLIGKIMGT 138 +++K K++ Sbjct: 130 NRRKFQAKLVSV 141 >gi|187923622|ref|YP_001895264.1| hypothetical protein Bphyt_1630 [Burkholderia phytofirmans PsJN] gi|226736380|sp|B2T379|RIMP_BURPP RecName: Full=Ribosome maturation factor rimP gi|187714816|gb|ACD16040.1| protein of unknown function DUF150 [Burkholderia phytofirmans PsJN] Length = 152 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 46/66 (69%), Gaps = 3/66 (4%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 +L I++++ G + + DCE++++ + +L VENI + RLEVSSPG+DRP+ + +DF R Sbjct: 28 MLCIYIDQPAG-IAIEDCEKVTRQLQHVLTVENI--DYERLEVSSPGLDRPLKKLADFER 84 Query: 112 WNGHVV 117 + G V Sbjct: 85 FAGSEV 90 >gi|91782987|ref|YP_558193.1| hypothetical protein Bxe_A2822 [Burkholderia xenovorans LB400] gi|296158770|ref|ZP_06841599.1| protein of unknown function DUF150 [Burkholderia sp. Ch1-1] gi|123358892|sp|Q140U8|RIMP_BURXL RecName: Full=Ribosome maturation factor rimP gi|91686941|gb|ABE30141.1| Conserved hypothetical protein [Burkholderia xenovorans LB400] gi|295890975|gb|EFG70764.1| protein of unknown function DUF150 [Burkholderia sp. Ch1-1] Length = 152 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 46/66 (69%), Gaps = 3/66 (4%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 +L I++++ G + + DCE++++ + +L VENI + RLEVSSPG+DRP+ + +DF R Sbjct: 28 MLCIYIDQPAG-IAIEDCEKVTRQLQHVLTVENI--DYERLEVSSPGLDRPLKKLADFER 84 Query: 112 WNGHVV 117 + G V Sbjct: 85 FAGSEV 90 >gi|332704825|ref|ZP_08424913.1| Ribosome maturation factor rimP [Desulfovibrio africanus str. Walvis Bay] gi|332554974|gb|EGJ52018.1| Ribosome maturation factor rimP [Desulfovibrio africanus str. Walvis Bay] Length = 170 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 73/154 (47%), Gaps = 12/154 (7%) Query: 25 ISSVIQPVIEEM--SFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 I+ + VIE M S V+I +L+ + + ++VE G +++ E S+ I +LDV Sbjct: 11 IAQAARTVIEPMGLSLWGVEI-VLDGRGQTVLVYVESPTG-VSVEQLAEASRNIGLVLDV 68 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ I G YRLE+SSPG +R + G V + GD++K G + E Sbjct: 69 EDFIPGTYRLELSSPGFERSFFSTEQMRDYMGEKVEIRTSVPLGDRRKFRGILKEVREDS 128 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 +E E + + ++ + ARLIV D Sbjct: 129 IAVEAEGQ--------LFNLRWEDVKKARLIVED 154 >gi|332528134|ref|ZP_08404165.1| hypothetical protein RBXJA2T_19301 [Rubrivivax benzoatilyticus JA2] gi|332112705|gb|EGJ12498.1| hypothetical protein RBXJA2T_19301 [Rubrivivax benzoatilyticus JA2] Length = 194 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 48/72 (66%), Gaps = 10/72 (13%) Query: 52 LLQIFVERDDGN--------MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPM 103 LL++ ++R G+ +T+ DCE +++ + +L+VEN+ + RLEVSSPG+DRP+ Sbjct: 46 LLRVTIDRVPGHAYPVEGEFVTVEDCEAVTRQLQYVLEVENV--DYERLEVSSPGLDRPL 103 Query: 104 VRKSDFLRWNGH 115 R +D+ R++G Sbjct: 104 RRAADYERFSGQ 115 >gi|169634555|ref|YP_001708291.1| hypothetical protein ABSDF3182 [Acinetobacter baumannii SDF] gi|226703734|sp|B0VLU4|RIMP_ACIBS RecName: Full=Ribosome maturation factor rimP gi|169153347|emb|CAP02460.1| conserved hypothetical protein [Acinetobacter baumannii] Length = 174 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 18/129 (13%) Query: 28 VIQPVIEEMSFRSVQISLLEE-KNLLLQIFVER-----------DDG------NMTLRDC 69 +I P +E I L + K LL+I+++R +DG + + DC Sbjct: 13 MIAPAVEACGVDLWGIEFLPQGKRSLLRIYIDRTVDENAEPVINEDGEVEQGRGIGVEDC 72 Query: 70 EELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ 129 ++Q + +LDV + I G Y LEVSSPG DRP + + G VA ++ + +++ Sbjct: 73 VRVTQQVGAMLDVHDPISGEYALEVSSPGWDRPFFQLEQLQGYIGQQVALRLIAAVENRR 132 Query: 130 KLIGKIMGT 138 K K++ Sbjct: 133 KFQAKLLAV 141 >gi|170696461|ref|ZP_02887587.1| protein of unknown function DUF150 [Burkholderia graminis C4D1M] gi|209520194|ref|ZP_03268965.1| protein of unknown function DUF150 [Burkholderia sp. H160] gi|295676259|ref|YP_003604783.1| protein of unknown function DUF150 [Burkholderia sp. CCGE1002] gi|307730030|ref|YP_003907254.1| hypothetical protein BC1003_2000 [Burkholderia sp. CCGE1003] gi|323525723|ref|YP_004227876.1| hypothetical protein BC1001_1380 [Burkholderia sp. CCGE1001] gi|170138614|gb|EDT06816.1| protein of unknown function DUF150 [Burkholderia graminis C4D1M] gi|209499353|gb|EDZ99437.1| protein of unknown function DUF150 [Burkholderia sp. H160] gi|295436102|gb|ADG15272.1| protein of unknown function DUF150 [Burkholderia sp. CCGE1002] gi|307584565|gb|ADN57963.1| protein of unknown function DUF150 [Burkholderia sp. CCGE1003] gi|323382725|gb|ADX54816.1| protein of unknown function DUF150 [Burkholderia sp. CCGE1001] Length = 152 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 45/63 (71%), Gaps = 3/63 (4%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 +L I++++ G + + DCE++++ + +L VENI + RLEVSSPG+DRP+ + +DF R Sbjct: 28 MLCIYIDQPAG-IAIEDCEKVTRQLQHVLTVENI--DYERLEVSSPGLDRPLKKLADFER 84 Query: 112 WNG 114 + G Sbjct: 85 FAG 87 >gi|186476489|ref|YP_001857959.1| hypothetical protein Bphy_1731 [Burkholderia phymatum STM815] gi|226736435|sp|B2JKT6|RIMP_BURP8 RecName: Full=Ribosome maturation factor rimP gi|184192948|gb|ACC70913.1| protein of unknown function DUF150 [Burkholderia phymatum STM815] Length = 152 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 45/63 (71%), Gaps = 3/63 (4%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 +L I++++ G + + DCE++++ + +L VENI + RLEVSSPG+DRP+ + +DF R Sbjct: 28 MLCIYIDQPAG-IAIEDCEKVTRQLQHVLTVENI--DYERLEVSSPGLDRPLKKLADFER 84 Query: 112 WNG 114 + G Sbjct: 85 FAG 87 >gi|21282877|ref|NP_645965.1| hypothetical protein MW1148 [Staphylococcus aureus subsp. aureus MW2] gi|49483428|ref|YP_040652.1| hypothetical protein SAR1241 [Staphylococcus aureus subsp. aureus MRSA252] gi|49486104|ref|YP_043325.1| hypothetical protein SAS1199 [Staphylococcus aureus subsp. aureus MSSA476] gi|57651835|ref|YP_186141.1| hypothetical protein SACOL1284 [Staphylococcus aureus subsp. aureus COL] gi|82750866|ref|YP_416607.1| hypothetical protein SAB1127 [Staphylococcus aureus RF122] gi|87160896|ref|YP_493855.1| hypothetical protein SAUSA300_1158 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194975|ref|YP_499775.1| hypothetical protein SAOUHSC_01242 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221387|ref|YP_001332209.1| hypothetical protein NWMN_1175 [Staphylococcus aureus subsp. aureus str. Newman] gi|161509431|ref|YP_001575090.1| hypothetical protein USA300HOU_1197 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142499|ref|ZP_03566992.1| hypothetical protein SauraJ_12822 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253731884|ref|ZP_04866049.1| protein of hypothetical function DUF150 [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257425319|ref|ZP_05601744.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257427980|ref|ZP_05604378.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257430613|ref|ZP_05606995.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257433373|ref|ZP_05609731.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257436215|ref|ZP_05612262.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|258423894|ref|ZP_05686779.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|258452564|ref|ZP_05700570.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|262048157|ref|ZP_06021044.1| hypothetical protein SAD30_1933 [Staphylococcus aureus D30] gi|262051327|ref|ZP_06023550.1| hypothetical protein SA930_2049 [Staphylococcus aureus 930918-3] gi|282903820|ref|ZP_06311708.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus C160] gi|282905583|ref|ZP_06313438.1| hypothetical protein SDAG_01207 [Staphylococcus aureus subsp. aureus Btn1260] gi|282908558|ref|ZP_06316388.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910837|ref|ZP_06318640.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282914042|ref|ZP_06321829.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M899] gi|282916525|ref|ZP_06324283.1| hypothetical protein SATG_00018 [Staphylococcus aureus subsp. aureus D139] gi|282918964|ref|ZP_06326699.1| hypothetical protein SASG_00270 [Staphylococcus aureus subsp. aureus C427] gi|282920509|ref|ZP_06328230.1| conserved hypothetical protein [Staphylococcus aureus A9765] gi|282924087|ref|ZP_06331763.1| hypothetical protein SARG_01628 [Staphylococcus aureus subsp. aureus C101] gi|283770329|ref|ZP_06343221.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus H19] gi|283958008|ref|ZP_06375459.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus A017934/97] gi|284024258|ref|ZP_06378656.1| hypothetical protein Saura13_06684 [Staphylococcus aureus subsp. aureus 132] gi|293501074|ref|ZP_06666925.1| hypothetical protein SCAG_01604 [Staphylococcus aureus subsp. aureus 58-424] gi|293510036|ref|ZP_06668744.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M809] gi|293526622|ref|ZP_06671307.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M1015] gi|294848261|ref|ZP_06789008.1| hypothetical protein SKAG_00320 [Staphylococcus aureus A9754] gi|295427752|ref|ZP_06820384.1| UPF0090 protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|297208089|ref|ZP_06924520.1| protein of hypothetical function DUF150 [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297591290|ref|ZP_06949928.1| protein of hypothetical function DUF150 [Staphylococcus aureus subsp. aureus MN8] gi|300912170|ref|ZP_07129613.1| protein of hypothetical function DUF150 [Staphylococcus aureus subsp. aureus TCH70] gi|304381171|ref|ZP_07363824.1| protein of hypothetical function DUF150 [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|34222911|sp|Q8NWZ3|RIMP_STAAW RecName: Full=Ribosome maturation factor rimP gi|56749717|sp|Q6G9U8|RIMP_STAAS RecName: Full=Ribosome maturation factor rimP gi|56749746|sp|Q6GHH0|RIMP_STAAR RecName: Full=Ribosome maturation factor rimP gi|81694636|sp|Q5HGG6|RIMP_STAAC RecName: Full=Ribosome maturation factor rimP gi|91207999|sp|Q2YXK3|RIMP_STAAB RecName: Full=Ribosome maturation factor rimP gi|122540592|sp|Q2G2D3|RIMP_STAA8 RecName: Full=Ribosome maturation factor rimP gi|123486179|sp|Q2FHH3|RIMP_STAA3 RecName: Full=Ribosome maturation factor rimP gi|189038628|sp|A8Z3U5|RIMP_STAAT RecName: Full=Ribosome maturation factor rimP gi|205405730|sp|A6QGG5|RIMP_STAAE RecName: Full=Ribosome maturation factor rimP gi|21204316|dbj|BAB95013.1| conserved hypotehtical protein [Staphylococcus aureus subsp. aureus MW2] gi|49241557|emb|CAG40243.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49244547|emb|CAG42976.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57286021|gb|AAW38115.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus COL] gi|82656397|emb|CAI80816.1| conserved hypothetical protein [Staphylococcus aureus RF122] gi|87126870|gb|ABD21384.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202533|gb|ABD30343.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374187|dbj|BAF67447.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|160368240|gb|ABX29211.1| hypothetical protein USA300HOU_1197 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724294|gb|EES93023.1| protein of hypothetical function DUF150 [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257271776|gb|EEV03914.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257274821|gb|EEV06308.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257278741|gb|EEV09360.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257281466|gb|EEV11603.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257284497|gb|EEV14617.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|257845923|gb|EEV69952.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|257859782|gb|EEV82624.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|259160702|gb|EEW45723.1| hypothetical protein SA930_2049 [Staphylococcus aureus 930918-3] gi|259163723|gb|EEW48278.1| hypothetical protein SAD30_1933 [Staphylococcus aureus D30] gi|269940756|emb|CBI49138.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TW20] gi|282314059|gb|EFB44451.1| hypothetical protein SARG_01628 [Staphylococcus aureus subsp. aureus C101] gi|282316774|gb|EFB47148.1| hypothetical protein SASG_00270 [Staphylococcus aureus subsp. aureus C427] gi|282319012|gb|EFB49364.1| hypothetical protein SATG_00018 [Staphylococcus aureus subsp. aureus D139] gi|282322110|gb|EFB52434.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M899] gi|282325442|gb|EFB55751.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282327620|gb|EFB57903.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330875|gb|EFB60389.1| hypothetical protein SDAG_01207 [Staphylococcus aureus subsp. aureus Btn1260] gi|282594171|gb|EFB99158.1| conserved hypothetical protein [Staphylococcus aureus A9765] gi|282595438|gb|EFC00402.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus C160] gi|283460476|gb|EFC07566.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus H19] gi|283470480|emb|CAQ49691.1| protein LMOf2365_1338 [Staphylococcus aureus subsp. aureus ST398] gi|283790157|gb|EFC28974.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus A017934/97] gi|290920694|gb|EFD97757.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M1015] gi|291096079|gb|EFE26340.1| hypothetical protein SCAG_01604 [Staphylococcus aureus subsp. aureus 58-424] gi|291466980|gb|EFF09498.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M809] gi|294825061|gb|EFG41483.1| hypothetical protein SKAG_00320 [Staphylococcus aureus A9754] gi|295128110|gb|EFG57744.1| UPF0090 protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|296887332|gb|EFH26234.1| protein of hypothetical function DUF150 [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297576176|gb|EFH94892.1| protein of hypothetical function DUF150 [Staphylococcus aureus subsp. aureus MN8] gi|298694557|gb|ADI97779.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ED133] gi|300886416|gb|EFK81618.1| protein of hypothetical function DUF150 [Staphylococcus aureus subsp. aureus TCH70] gi|302332871|gb|ADL23064.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus JKD6159] gi|302751088|gb|ADL65265.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340154|gb|EFM06095.1| protein of hypothetical function DUF150 [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312438355|gb|ADQ77426.1| protein of hypothetical function DUF150 [Staphylococcus aureus subsp. aureus TCH60] gi|315194153|gb|EFU24546.1| hypothetical protein CGSSa00_05608 [Staphylococcus aureus subsp. aureus CGS00] gi|315198507|gb|EFU28836.1| hypothetical protein CGSSa01_02741 [Staphylococcus aureus subsp. aureus CGS01] gi|320140918|gb|EFW32765.1| hypothetical protein HMPREF9528_00535 [Staphylococcus aureus subsp. aureus MRSA131] gi|320144366|gb|EFW36132.1| hypothetical protein HMPREF9529_00249 [Staphylococcus aureus subsp. aureus MRSA177] gi|323441045|gb|EGA98752.1| hypothetical protein SAO11_0112 [Staphylococcus aureus O11] gi|323443914|gb|EGB01525.1| hypothetical protein SAO46_0024 [Staphylococcus aureus O46] gi|329313935|gb|AEB88348.1| Ribosome maturation factor rimP [Staphylococcus aureus subsp. aureus T0131] gi|329727856|gb|EGG64307.1| hypothetical protein SA21189_0300 [Staphylococcus aureus subsp. aureus 21189] gi|329733678|gb|EGG70006.1| hypothetical protein SA21193_0242 [Staphylococcus aureus subsp. aureus 21193] Length = 155 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 55/86 (63%), Gaps = 2/86 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +++P++E+++F V + ++E ++ L+I ++++ G + L DC S+ IS +D Sbjct: 8 VEVIVKPIMEDLNFELVDVEYVKEGRDHFLRISIDKE-GGVDLNDCTLASEKISEAMDAN 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDF 109 + I Y L+V+SPG +RP+ ++ DF Sbjct: 67 DPIPEMYYLDVASPGAERPIKKEQDF 92 >gi|300312900|ref|YP_003776992.1| hypothetical protein Hsero_3606 [Herbaspirillum seropedicae SmR1] gi|300075685|gb|ADJ65084.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 164 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 12/77 (15%) Query: 63 NMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV 122 ++T+ DCE+ + + + VEN++ + RLEVSSPG+DRP+ + SDF+R+ V CE V Sbjct: 46 SITVEDCEKATHQLLHVFTVENVL--YERLEVSSPGLDRPLKKFSDFVRF----VDCEAV 99 Query: 123 LSSGDKQKLIGKIMGTS 139 + KL + GTS Sbjct: 100 I------KLRVPLPGTS 110 >gi|159162465|pdb|1IB8|A Chain A, Solution Structure And Function Of A Conserved Protein Sp14.3 Encoded By An Essential Streptococcus Pneumoniae Gene Length = 164 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 79/153 (51%), Gaps = 7/153 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 + V++PVIE F V I + +++L IFV++ +G +TL D +L++ ISP+LD Sbjct: 14 VREVVEPVIE-APFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEMISPVLDTI 71 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI-GKIMGTSE 140 + Y LE++SPG++RP+ K G + + + DKQK+ G ++ E Sbjct: 72 KPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGL-YQAIDKQKVFEGTLLAFEE 130 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 +E + K ++ ++ + L+ +L+ Sbjct: 131 DELTMEYMDKTRKKTVQIPYSLVSKARLAVKLL 163 >gi|328950380|ref|YP_004367715.1| Ribosome maturation factor rimP [Marinithermus hydrothermalis DSM 14884] gi|328450704|gb|AEB11605.1| Ribosome maturation factor rimP [Marinithermus hydrothermalis DSM 14884] Length = 147 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 7/115 (6%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVER-DDGNMTLRDCEELSQAISPILD 81 ++ +VI+ V+ + + ++++L K +L + +ER D+ ++ D E SQ IS LD Sbjct: 2 ELWNVIEAVVRPLGYEVLEVTLKGGGKTRVLTVRLERADEQPISFADLERASQVISLELD 61 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 + I G YRLEV SPG DRP++ F R+ G + D+ + G+I+ Sbjct: 62 RLDPIPGAYRLEVESPGPDRPLITARHFERFMGLKAKVQ-----SDEGRFTGRIV 111 >gi|260550520|ref|ZP_05824730.1| UPF0090 protein [Acinetobacter sp. RUH2624] gi|260406435|gb|EEW99917.1| UPF0090 protein [Acinetobacter sp. RUH2624] Length = 174 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 18/129 (13%) Query: 28 VIQPVIEEMSFRSVQISLLEE-KNLLLQIFVER-----------DDG------NMTLRDC 69 +I P ++ I L + K LL+I+++R +DG + ++DC Sbjct: 13 MIAPAVQACGVDLWGIEFLPQGKRSLLRIYIDRPVDENAEPVINEDGEVEQGRGIGVQDC 72 Query: 70 EELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ 129 ++Q + +LDV + I G Y LEVSSPG DRP + + G VA ++ + +++ Sbjct: 73 VRVTQQVGAMLDVHDPISGEYSLEVSSPGWDRPFFQLEQLQSYIGQQVALRLIAAVENRR 132 Query: 130 KLIGKIMGT 138 K K++ Sbjct: 133 KFQAKLLAV 141 >gi|284992352|ref|YP_003410906.1| hypothetical protein Gobs_3968 [Geodermatophilus obscurus DSM 43160] gi|284065597|gb|ADB76535.1| protein of unknown function DUF150 [Geodermatophilus obscurus DSM 43160] Length = 196 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 78/160 (48%), Gaps = 8/160 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 +A ++ ++ PV+E + ++ + + ++++ V+RD G +TL D E+S+A+S Sbjct: 10 VATRMAGLVAPVVEAAGYDLEELVVTPAGRRSIVRVVVDRDAG-VTLDDVAEVSRAVSTA 68 Query: 80 LDVEN--IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LEV+SPG+DRP+ + R G +V V G +++ +++ Sbjct: 69 LDEHDGEFGSAPYVLEVTSPGVDRPLTEPRHWRRNTGRLVTV-AVGREGSSEQVTARVLE 127 Query: 138 TSETGFFL---EKEKRGEKDMNELQIAISFDSLLSARLIV 174 G L K K G K + + + L + R+ V Sbjct: 128 VDGDGVTLAVEAKGKPGAKKRPPTRRQVPWQELGAGRVQV 167 >gi|50083627|ref|YP_045137.1| hypothetical protein ACIAD0367 [Acinetobacter sp. ADP1] gi|51316595|sp|Q6FF42|RIMP_ACIAD RecName: Full=Ribosome maturation factor rimP gi|49529603|emb|CAG67315.1| conserved hypothetical protein [Acinetobacter sp. ADP1] Length = 174 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 18/130 (13%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVER-----------DDGNMTL------ 66 + +I P ++ I + + K LL+IF+++ +DG L Sbjct: 10 LHDLIAPAVQACDVNLWGIEFIPQGKRSLLRIFIDKPVDETAEPVLNEDGETELGRGIGV 69 Query: 67 RDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 +DC ++Q + ILDV + I G Y LEVSSPG DRP + + G VA ++ + Sbjct: 70 QDCVRVTQQVGAILDVHDPISGEYALEVSSPGWDRPFFQLEQMSAYIGQQVALRLISAVE 129 Query: 127 DKQKLIGKIM 136 +++K K++ Sbjct: 130 NRRKFQAKLL 139 >gi|228474945|ref|ZP_04059673.1| conserved hypothetical protein [Staphylococcus hominis SK119] gi|314936574|ref|ZP_07843921.1| conserved hypothetical protein [Staphylococcus hominis subsp. hominis C80] gi|228270930|gb|EEK12318.1| conserved hypothetical protein [Staphylococcus hominis SK119] gi|313655193|gb|EFS18938.1| conserved hypothetical protein [Staphylococcus hominis subsp. hominis C80] Length = 155 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 56/90 (62%), Gaps = 2/90 (2%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + ++ ++I P++++++F V + +E K+ L+I ++++ G + L DC S+ IS Sbjct: 4 ITEEVETIITPILDDLNFELVDVEYAKEGKDRFLRISIDKE-GGVDLNDCTLASEKISEA 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDF 109 +D + I Y L+V+SPG +RP+ ++ D+ Sbjct: 63 MDQNDPIPEMYYLDVASPGAERPLKKEKDY 92 >gi|169797409|ref|YP_001715202.1| hypothetical protein ABAYE3440 [Acinetobacter baumannii AYE] gi|184156668|ref|YP_001845007.1| hypothetical protein ACICU_00348 [Acinetobacter baumannii ACICU] gi|213155777|ref|YP_002317822.1| hypothetical protein AB57_0413 [Acinetobacter baumannii AB0057] gi|215484848|ref|YP_002327085.1| hypothetical protein ABBFA_003201 [Acinetobacter baumannii AB307-0294] gi|239500932|ref|ZP_04660242.1| hypothetical protein AbauAB_01325 [Acinetobacter baumannii AB900] gi|260556301|ref|ZP_05828520.1| UPF0090 protein [Acinetobacter baumannii ATCC 19606] gi|301346316|ref|ZP_07227057.1| hypothetical protein AbauAB0_08725 [Acinetobacter baumannii AB056] gi|301513269|ref|ZP_07238506.1| hypothetical protein AbauAB05_16841 [Acinetobacter baumannii AB058] gi|301596449|ref|ZP_07241457.1| hypothetical protein AbauAB059_11562 [Acinetobacter baumannii AB059] gi|332855374|ref|ZP_08435839.1| hypothetical protein HMPREF0021_03428 [Acinetobacter baumannii 6013150] gi|332867630|ref|ZP_08437762.1| hypothetical protein HMPREF0020_01378 [Acinetobacter baumannii 6013113] gi|332873076|ref|ZP_08441033.1| hypothetical protein HMPREF0022_00636 [Acinetobacter baumannii 6014059] gi|226703746|sp|B7H117|RIMP_ACIB3 RecName: Full=Ribosome maturation factor rimP gi|226703825|sp|B0VE83|RIMP_ACIBY RecName: Full=Ribosome maturation factor rimP gi|226703842|sp|B2I2M5|RIMP_ACIBC RecName: Full=Ribosome maturation factor rimP gi|226703866|sp|A3M1K2|RIMP_ACIBT RecName: Full=Ribosome maturation factor rimP gi|226706136|sp|B7I3R7|RIMP_ACIB5 RecName: Full=Ribosome maturation factor rimP gi|169150336|emb|CAM88233.1| conserved hypothetical protein [Acinetobacter baumannii AYE] gi|183208262|gb|ACC55660.1| uncharacterized protein conserved in bacteria [Acinetobacter baumannii ACICU] gi|193076181|gb|ABO10796.2| hypothetical protein A1S_0334 [Acinetobacter baumannii ATCC 17978] gi|213054937|gb|ACJ39839.1| conserved hypothetical protein [Acinetobacter baumannii AB0057] gi|213988150|gb|ACJ58449.1| conserved hypothetical protein [Acinetobacter baumannii AB307-0294] gi|260410356|gb|EEX03655.1| UPF0090 protein [Acinetobacter baumannii ATCC 19606] gi|322506555|gb|ADX02009.1| Putative uncharacterized protein [Acinetobacter baumannii 1656-2] gi|323516434|gb|ADX90815.1| hypothetical protein ABTW07_0378 [Acinetobacter baumannii TCDC-AB0715] gi|332727506|gb|EGJ58932.1| hypothetical protein HMPREF0021_03428 [Acinetobacter baumannii 6013150] gi|332733824|gb|EGJ64971.1| hypothetical protein HMPREF0020_01378 [Acinetobacter baumannii 6013113] gi|332738588|gb|EGJ69458.1| hypothetical protein HMPREF0022_00636 [Acinetobacter baumannii 6014059] Length = 174 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 18/129 (13%) Query: 28 VIQPVIEEMSFRSVQISLLEE-KNLLLQIFVER-----------DDG------NMTLRDC 69 +I P +E I L + K LL+I+++R +DG + + DC Sbjct: 13 MIAPAVEACGVDLWGIEFLPQGKRSLLRIYIDRPVDENAEPVINEDGEVEQGRGIGVEDC 72 Query: 70 EELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ 129 ++Q + +LDV + I G Y LEVSSPG DRP + + G VA ++ + +++ Sbjct: 73 VRVTQQVGAMLDVHDPISGEYALEVSSPGWDRPFFQLEQLQGYIGQQVALRLIAAVENRR 132 Query: 130 KLIGKIMGT 138 K K++ Sbjct: 133 KFQAKLLAV 141 >gi|257066113|ref|YP_003152369.1| hypothetical protein Apre_0606 [Anaerococcus prevotii DSM 20548] gi|256797993|gb|ACV28648.1| protein of unknown function DUF150 [Anaerococcus prevotii DSM 20548] Length = 147 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 11/152 (7%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 M L + + + IE + + V I +KN +L F+ DG +T+ DCE++S + Sbjct: 1 MDLTKRLKEIFEADIENLGYELVDIEFKGQKNNKILTFFIYNKDG-ITIEDCEKVSAFLD 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD +II+ Y LEVSS + RP+ D R ++ ++ D + +GKI+ Sbjct: 60 EKLDEIDIIKDSYYLEVSSQDLSRPIKTDRDLERNKDELLKIKL----KDGEIFLGKIIN 115 Query: 138 TSET--GFFLEKEKR---GEKDMNELQIAISF 164 E F LE E ++D+ E+ I I F Sbjct: 116 IGEDFYEFILEDENTKNIKKEDVKEIYIEIVF 147 >gi|284052677|ref|ZP_06382887.1| hypothetical protein AplaP_14508 [Arthrospira platensis str. Paraca] gi|291568134|dbj|BAI90406.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 153 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 53/103 (51%) Query: 48 EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKS 107 +K +L++ + + + +L DCE +S+A+ LD ++I Y LEVSSPG+ R + Sbjct: 33 QKPPVLRVDIRNLEQDTSLEDCERMSRALEEQLDAVDVIPDAYILEVSSPGVSRSLSCDR 92 Query: 108 DFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKR 150 DF+ + G V ++ GK++G E + ++ R Sbjct: 93 DFISFKGFPVTVTTSEPYKGHKQQTGKLVGRDEMAVHINQKGR 135 >gi|217077787|ref|YP_002335505.1| hypothetical protein THA_1728 [Thermosipho africanus TCF52B] gi|259645125|sp|B7IDT7|RIMP_THEAB RecName: Full=Ribosome maturation factor rimP gi|217037642|gb|ACJ76164.1| hypothetical protein THA_1728 [Thermosipho africanus TCF52B] Length = 148 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 5/110 (4%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 L+I ++ ++ +DCE +S+ + LD +II Y L VSSPG+DRP+ DF R Sbjct: 36 FLEIVIDNPLDYVSTKDCENISREVEFQLDKLDIIPQRYYLTVSSPGLDRPLRSIDDFKR 95 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIA 161 + + V ++ + + +IG I ++ FLE+ + K++ QI Sbjct: 96 FINNKVKIKL-----ENETIIGYIKDVKDSVIFLEENNKKIKEIKYNQIK 140 >gi|77359941|ref|YP_339516.1| hypothetical protein PSHAa0995 [Pseudoalteromonas haloplanktis TAC125] gi|76874852|emb|CAI86073.1| conserved protein of unknown function (yhbC) [Pseudoalteromonas haloplanktis TAC125] Length = 141 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/113 (25%), Positives = 61/113 (53%), Gaps = 2/113 (1%) Query: 28 VIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 ++ P +E + F + ++ ++ L++++ + G +++ +C + S+ IS ILDVE+ I Sbjct: 1 MLTPAVEMLGFELHGLEFVQAGRHSTLRVYITHEAG-ISVDNCADASRQISAILDVEDPI 59 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 Y LEVSSPG+DR + ++ + + G V L ++ G ++ + Sbjct: 60 TNEYDLEVSSPGVDRLLFKQDHYEQAQGEEVQLRTKLPQDGRRNFKGDLIAVT 112 >gi|291543556|emb|CBL16665.1| Uncharacterized protein conserved in bacteria [Ruminococcus sp. 18P13] Length = 158 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 61/111 (54%), Gaps = 7/111 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 LA ++ + VI ++ F E + L++F+++D+G +++ DCE +S+ +S + Sbjct: 15 ALAAPLAESLGLVIWDVRFEK------EGASWYLRVFIDKDEG-ISIDDCEAMSRPLSDL 67 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 LD + I+ Y LEV S G++R +VR+S F G VV ++ QK Sbjct: 68 LDEADPIDQQYFLEVGSAGLERDLVRESHFAASIGAVVRMRLIRPDETGQK 118 >gi|257094535|ref|YP_003168176.1| hypothetical protein CAP2UW1_2969 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047059|gb|ACV36247.1| protein of unknown function DUF150 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 155 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 65/119 (54%), Gaps = 5/119 (4%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVER--DDGNMTLRDCEELSQAISPILD 81 D+ V++ + + ++ V + + +L++F+++ + + DC +S ++ +L Sbjct: 2 DLHEVLEVTVTGLGYQLVDVER-SPRGRVLRVFIDKPAKPRGVDVEDCALVSNQLTRVLL 60 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 VENI + RLEVSSPG+DRP+ ++ DF R+ G V ++ L ++ G + G + Sbjct: 61 VENI--DYERLEVSSPGLDRPLTKEVDFERFAGSEVTIKLRLPLNGRRNFAGVLHGAQD 117 >gi|298528713|ref|ZP_07016117.1| protein of unknown function DUF150 [Desulfonatronospira thiodismutans ASO3-1] gi|298512365|gb|EFI36267.1| protein of unknown function DUF150 [Desulfonatronospira thiodismutans ASO3-1] Length = 154 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 43/66 (65%), Gaps = 1/66 (1%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 +L++FV+ +G +++ C +LS+ +S LDVE+++ G Y LEVSSPG++R R Sbjct: 40 VLRVFVDSPEG-VSIDQCADLSRQLSVALDVEDLVPGSYNLEVSSPGLNRRFFRPEQMSG 98 Query: 112 WNGHVV 117 + GH V Sbjct: 99 YTGHKV 104 >gi|168482792|ref|ZP_02707744.1| conserved hypothetical protein [Streptococcus pneumoniae CDC1873-00] gi|303260041|ref|ZP_07346014.1| hypothetical protein CGSSp9vBS293_01125 [Streptococcus pneumoniae SP-BS293] gi|303261225|ref|ZP_07347173.1| hypothetical protein CGSSp14BS292_07790 [Streptococcus pneumoniae SP14-BS292] gi|303263890|ref|ZP_07349811.1| hypothetical protein CGSSpBS397_04757 [Streptococcus pneumoniae BS397] gi|303267074|ref|ZP_07352945.1| hypothetical protein CGSSpBS457_10002 [Streptococcus pneumoniae BS457] gi|303269289|ref|ZP_07355063.1| hypothetical protein CGSSpBS458_08806 [Streptococcus pneumoniae BS458] gi|172043720|gb|EDT51766.1| conserved hypothetical protein [Streptococcus pneumoniae CDC1873-00] gi|302637359|gb|EFL67846.1| hypothetical protein CGSSp14BS292_07790 [Streptococcus pneumoniae SP14-BS292] gi|302638736|gb|EFL69198.1| hypothetical protein CGSSpBS293_01125 [Streptococcus pneumoniae SP-BS293] gi|302641186|gb|EFL71559.1| hypothetical protein CGSSpBS458_08806 [Streptococcus pneumoniae BS458] gi|302643402|gb|EFL73678.1| hypothetical protein CGSSpBS457_10002 [Streptococcus pneumoniae BS457] gi|302646295|gb|EFL76521.1| hypothetical protein CGSSpBS397_04757 [Streptococcus pneumoniae BS397] Length = 175 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 78/152 (51%), Gaps = 7/152 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 + V++PVIE F V I + +++L IFV++ +G +TL D +L++ ISP+LD Sbjct: 27 VREVVEPVIE-APFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEMISPVLDTI 84 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI-GKIMGTSE 140 + Y LE++SPG++RP+ K G + + + DKQK+ G ++ E Sbjct: 85 KPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGL-YQAIDKQKVFEGTLLAFEE 143 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +E + K ++ ++ + L+ +L Sbjct: 144 DELTMEYMDKTRKKTVQIPYSLVSKARLAVKL 175 >gi|148983930|ref|ZP_01817249.1| hypothetical protein CGSSp3BS71_07349 [Streptococcus pneumoniae SP3-BS71] gi|148990070|ref|ZP_01821324.1| hypothetical protein CGSSp6BS73_05420 [Streptococcus pneumoniae SP6-BS73] gi|148992338|ref|ZP_01822061.1| hypothetical protein CGSSp9BS68_06575 [Streptococcus pneumoniae SP9-BS68] gi|148998225|ref|ZP_01825694.1| hypothetical protein CGSSp11BS70_03456 [Streptococcus pneumoniae SP11-BS70] gi|168485663|ref|ZP_02710171.1| conserved hypothetical protein [Streptococcus pneumoniae CDC1087-00] gi|168490558|ref|ZP_02714701.1| conserved hypothetical protein [Streptococcus pneumoniae CDC0288-04] gi|168576546|ref|ZP_02722420.1| conserved hypothetical protein [Streptococcus pneumoniae MLV-016] gi|225854093|ref|YP_002735605.1| hypothetical protein SPJ_0512 [Streptococcus pneumoniae JJA] gi|225856262|ref|YP_002737773.1| hypothetical protein SPP_0569 [Streptococcus pneumoniae P1031] gi|225860557|ref|YP_002742066.1| hypothetical protein SPT_0582 [Streptococcus pneumoniae Taiwan19F-14] gi|237650176|ref|ZP_04524428.1| hypothetical protein SpneC1_05532 [Streptococcus pneumoniae CCRI 1974] gi|237821776|ref|ZP_04597621.1| hypothetical protein SpneC19_05602 [Streptococcus pneumoniae CCRI 1974M2] gi|298230908|ref|ZP_06964589.1| hypothetical protein SpneCMD_09588 [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255626|ref|ZP_06979212.1| hypothetical protein SpneCM_08527 [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502346|ref|YP_003724286.1| hypothetical protein HMPREF0837_10844 [Streptococcus pneumoniae TCH8431/19A] gi|303255253|ref|ZP_07341326.1| hypothetical protein CGSSpBS455_07226 [Streptococcus pneumoniae BS455] gi|307709806|ref|ZP_07646257.1| conserved hypothetical protein [Streptococcus mitis SK564] gi|254806452|sp|C1CCT4|RIMP_STRZJ RecName: Full=Ribosome maturation factor rimP gi|254806512|sp|C1CJ35|RIMP_STRZP RecName: Full=Ribosome maturation factor rimP gi|254806519|sp|C1CQ44|RIMP_STRZT RecName: Full=Ribosome maturation factor rimP gi|259586203|sp|C1C5S4|RIMP_STRP7 RecName: Full=Ribosome maturation factor rimP gi|259586204|sp|B2IME0|RIMP_STRPS RecName: Full=Ribosome maturation factor rimP gi|147755868|gb|EDK62912.1| hypothetical protein CGSSp11BS70_03456 [Streptococcus pneumoniae SP11-BS70] gi|147924077|gb|EDK75189.1| hypothetical protein CGSSp3BS71_07349 [Streptococcus pneumoniae SP3-BS71] gi|147924596|gb|EDK75683.1| hypothetical protein CGSSp6BS73_05420 [Streptococcus pneumoniae SP6-BS73] gi|147928964|gb|EDK79976.1| hypothetical protein CGSSp9BS68_06575 [Streptococcus pneumoniae SP9-BS68] gi|183571099|gb|EDT91627.1| conserved hypothetical protein [Streptococcus pneumoniae CDC1087-00] gi|183574915|gb|EDT95443.1| conserved hypothetical protein [Streptococcus pneumoniae CDC0288-04] gi|183577690|gb|EDT98218.1| conserved hypothetical protein [Streptococcus pneumoniae MLV-016] gi|225722728|gb|ACO18581.1| conserved hypothetical protein [Streptococcus pneumoniae JJA] gi|225725938|gb|ACO21790.1| conserved hypothetical protein [Streptococcus pneumoniae P1031] gi|225727228|gb|ACO23079.1| conserved hypothetical protein [Streptococcus pneumoniae Taiwan19F-14] gi|298237941|gb|ADI69072.1| protein of hypothetical function DUF150 [Streptococcus pneumoniae TCH8431/19A] gi|301799609|emb|CBW32164.1| conserved hypothetical protein [Streptococcus pneumoniae OXC141] gi|301801433|emb|CBW34120.1| conserved hypothetical protein [Streptococcus pneumoniae INV200] gi|302597794|gb|EFL64867.1| hypothetical protein CGSSpBS455_07226 [Streptococcus pneumoniae BS455] gi|307619508|gb|EFN98633.1| conserved hypothetical protein [Streptococcus mitis SK564] gi|327390292|gb|EGE88633.1| hypothetical protein SPAR5_0534 [Streptococcus pneumoniae GA04375] gi|332076388|gb|EGI86851.1| hypothetical protein SPAR68_0575 [Streptococcus pneumoniae GA41301] gi|332202436|gb|EGJ16505.1| hypothetical protein SPAR69_0547 [Streptococcus pneumoniae GA41317] gi|332203717|gb|EGJ17784.1| hypothetical protein SPAR93_0588 [Streptococcus pneumoniae GA47368] Length = 159 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 78/154 (50%), Gaps = 11/154 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 + V++PVIE F V I + +++L IFV++ +G +TL D +L++ ISP+LD Sbjct: 11 VREVVEPVIE-APFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEMISPVLDTI 68 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI-GKIMGTSE 140 + Y LE++SPG++RP+ K G + + + DKQK+ G ++ E Sbjct: 69 KPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGL-YQAIDKQKVFEGTLLAFEE 127 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + K +QI S S ARL V Sbjct: 128 DELTMEYMDKTRK--KTVQIPYSLVS--KARLAV 157 >gi|297180709|gb|ADI16918.1| uncharacterized protein conserved in bacteria [uncultured gamma proteobacterium HF0010_16J05] Length = 171 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 10/152 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I +I P +E + I L + K L I++ER DG + + C +S+ + +LDVE Sbjct: 27 IEELIAPTVESLGCEVWGIEYLSQGKYSKLLIYIERADG-IDVDLCATVSKHVGDLLDVE 85 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +I Y LEVSSPG+DR + ++ +L G V + ++++ G + G + Sbjct: 86 ELISSRYTLEVSSPGMDRVLFKEQHYLDHVGERVEIRLNYPFEGRKRISGILAGIEDQTA 145 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +++ E + + +++ ARL+ T Sbjct: 146 IVQE--------AEDEFLLPLENVQKARLVPT 169 >gi|332707467|ref|ZP_08427515.1| hypothetical protein LYNGBM3L_38480 [Lyngbya majuscula 3L] gi|332353764|gb|EGJ33256.1| hypothetical protein LYNGBM3L_38480 [Lyngbya majuscula 3L] Length = 153 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 54/100 (54%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 +L++++ + +L DCE +S+A+ LD + II Y LE+SSPGI + + +F+ Sbjct: 37 VLRVYIRNPIRDTSLDDCERMSRALEAQLDAKEIILDTYVLEISSPGITQDLTTDREFIS 96 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRG 151 + G V + +Q+ G+++ E+G +L + R Sbjct: 97 FKGFGVIVQTFEPYQGQQEWRGQLIRRDESGVYLNLKGRA 136 >gi|307705616|ref|ZP_07642468.1| conserved hypothetical protein [Streptococcus mitis SK597] gi|307620893|gb|EFN99977.1| conserved hypothetical protein [Streptococcus mitis SK597] Length = 159 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 78/154 (50%), Gaps = 11/154 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 + V++PVIE F V I + +++L IFV++ +G +TL D +L++ ISP+LD Sbjct: 11 VREVVEPVIE-APFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEMISPVLDTI 68 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI-GKIMGTSE 140 + Y LE++SPG++RP+ K G + + + DKQK+ G ++ E Sbjct: 69 KPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGL-YQAIDKQKVFEGTLLAFEE 127 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + K +QI S S ARL V Sbjct: 128 EELTMEYMDKTRK--KTVQIPYSLVS--KARLAV 157 >gi|182683485|ref|YP_001835232.1| hypothetical protein SPCG_0515 [Streptococcus pneumoniae CGSP14] gi|225858390|ref|YP_002739900.1| hypothetical protein SP70585_0612 [Streptococcus pneumoniae 70585] gi|182628819|gb|ACB89767.1| hypothetical protein SPCG_0515 [Streptococcus pneumoniae CGSP14] gi|225720853|gb|ACO16707.1| conserved hypothetical protein [Streptococcus pneumoniae 70585] Length = 183 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 78/152 (51%), Gaps = 7/152 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 + V++PVIE F V I + +++L IFV++ +G +TL D +L++ ISP+LD Sbjct: 35 VREVVEPVIE-APFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEMISPVLDTI 92 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI-GKIMGTSE 140 + Y LE++SPG++RP+ K G + + + DKQK+ G ++ E Sbjct: 93 KPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGL-YQAIDKQKVFEGTLLAFEE 151 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +E + K ++ ++ + L+ +L Sbjct: 152 DELTMEYMDKTRKKTVQIPYSLVSKARLAVKL 183 >gi|146319504|ref|YP_001199216.1| hypothetical protein SSU05_1850 [Streptococcus suis 05ZYH33] gi|259645119|sp|A4VXH7|RIMP_STRSY RecName: Full=Ribosome maturation factor rimP gi|145690310|gb|ABP90816.1| unknown protein [Streptococcus suis 05ZYH33] Length = 158 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 67/128 (52%), Gaps = 9/128 (7%) Query: 50 NLLLQIFVERDDGNMTLRDCEELSQAISPILDV--ENIIEGHYRLEVSSPGIDRPMVRKS 107 + +L IFV+++ G ++L+D +LS+ ISPILD + Y LEV+SPG++RP+ Sbjct: 35 DYVLSIFVDKE-GGISLQDTADLSEKISPILDTIKPDPFPDQYMLEVTSPGLERPLKTAD 93 Query: 108 DFLRWNGHVVACEIVLSSGDKQKLI-GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDS 166 + G + ++ + DK K+ G ++ T +E + K ++ I + + Sbjct: 94 AVEKAVGKYIHVKL-YQAIDKLKVFEGTLLSFDGTDLIMEYMDKTRKK----EVTIPYQT 148 Query: 167 LLSARLIV 174 + ARL V Sbjct: 149 VAKARLAV 156 >gi|291541941|emb|CBL15051.1| Uncharacterized protein conserved in bacteria [Ruminococcus bromii L2-63] Length = 159 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 55/91 (60%), Gaps = 2/91 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + + QP++E + ++E + L++++++ +G + + DCE +S+AI+ LD Sbjct: 13 VWELCQPIVEGFGLSLWDVRYVKEGADRFLRVYIDKPEG-IDINDCENVSRAINGPLDEL 71 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNG 114 + IE Y LEV SPGI+R ++R F+++ G Sbjct: 72 DPIEEAYCLEVCSPGIERELIRDEHFMQFIG 102 >gi|139436992|ref|ZP_01771152.1| Hypothetical protein COLAER_00126 [Collinsella aerofaciens ATCC 25986] gi|133776639|gb|EBA40459.1| Hypothetical protein COLAER_00126 [Collinsella aerofaciens ATCC 25986] Length = 170 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 58/102 (56%), Gaps = 4/102 (3%) Query: 49 KNLLLQIFVERDDG-NMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKS 107 K +++ +E +G +++L D ++ + +++ + I Y LEVSSPG+ RP+ R S Sbjct: 41 KAPCVRVRIEGAEGQSLSLNDVTANTKWVGDVIEELDPISSSYTLEVSSPGMARPLRRPS 100 Query: 108 DFLRWNGHVVACEIVLSSGD-KQKLIGKIMGTSETGFFLEKE 148 DF R+ G CE+ ++ + ++K GKI +ET LE E Sbjct: 101 DFARFVGE--NCELTSTATEGRRKYAGKIASATETSVTLELE 140 >gi|15900464|ref|NP_345068.1| hypothetical protein SP_0552 [Streptococcus pneumoniae TIGR4] gi|111657274|ref|ZP_01408040.1| hypothetical protein SpneT_02001512 [Streptococcus pneumoniae TIGR4] gi|149012574|ref|ZP_01833571.1| hypothetical protein CGSSp19BS75_10108 [Streptococcus pneumoniae SP19-BS75] gi|168488243|ref|ZP_02712442.1| conserved hypothetical protein [Streptococcus pneumoniae SP195] gi|194396782|ref|YP_002037213.1| hypothetical protein SPG_0498 [Streptococcus pneumoniae G54] gi|221231385|ref|YP_002510537.1| hypothetical protein SPN23F_04980 [Streptococcus pneumoniae ATCC 700669] gi|307710805|ref|ZP_07647233.1| conserved hypothetical protein [Streptococcus mitis SK321] gi|34222993|sp|Q97S61|RIMP_STRPN RecName: Full=Ribosome maturation factor rimP; AltName: Full=SP14.3 gi|226707643|sp|B5E262|RIMP_STRP4 RecName: Full=Ribosome maturation factor rimP gi|254806440|sp|B8ZM89|RIMP_STRPJ RecName: Full=Ribosome maturation factor rimP gi|14972026|gb|AAK74708.1| SP14.3 protein [Streptococcus pneumoniae TIGR4] gi|147763379|gb|EDK70316.1| hypothetical protein CGSSp19BS75_10108 [Streptococcus pneumoniae SP19-BS75] gi|183572963|gb|EDT93491.1| conserved hypothetical protein [Streptococcus pneumoniae SP195] gi|194356449|gb|ACF54897.1| hypothetical protein SPG_0498 [Streptococcus pneumoniae G54] gi|220673845|emb|CAR68348.1| conserved hypothetical protein [Streptococcus pneumoniae ATCC 700669] gi|301793756|emb|CBW36143.1| conserved hypothetical protein [Streptococcus pneumoniae INV104] gi|307617411|gb|EFN96583.1| conserved hypothetical protein [Streptococcus mitis SK321] gi|332074366|gb|EGI84842.1| hypothetical protein SPAR50_0547 [Streptococcus pneumoniae GA17570] gi|332204572|gb|EGJ18637.1| hypothetical protein SPAR120_0537 [Streptococcus pneumoniae GA47901] Length = 159 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 78/154 (50%), Gaps = 11/154 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 + V++PVIE F V I + +++L IFV++ +G +TL D +L++ ISP+LD Sbjct: 11 VREVVEPVIE-APFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEIISPVLDTI 68 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI-GKIMGTSE 140 + Y LE++SPG++RP+ K G + + + DKQK+ G ++ E Sbjct: 69 KPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGL-YQAIDKQKVFEGTLLAFEE 127 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + K +QI S S ARL V Sbjct: 128 DELTMEYMDKTRK--KTVQIPYSLVS--KARLAV 157 >gi|260583737|ref|ZP_05851485.1| conserved hypothetical protein [Granulicatella elegans ATCC 700633] gi|260158363|gb|EEW93431.1| conserved hypothetical protein [Granulicatella elegans ATCC 700633] Length = 157 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 4/96 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 +S++ PVIE F V + ++E KN L+ ++++ G + L DC +S+ S +LD + Sbjct: 8 VSTLALPVIEAEGFELVDLEFVKEGKNWFLRFYLDK-PGGIDLDDCAFMSEKFSELLDAQ 66 Query: 84 --NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + I Y LEVSSPG +RP+ + D G V Sbjct: 67 DPDPIPQAYFLEVSSPGAERPLKTEKDLKEAIGQYV 102 >gi|331701345|ref|YP_004398304.1| ribosome maturation factor rimP [Lactobacillus buchneri NRRL B-30929] gi|329128688|gb|AEB73241.1| Ribosome maturation factor rimP [Lactobacillus buchneri NRRL B-30929] Length = 157 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/137 (24%), Positives = 71/137 (51%), Gaps = 4/137 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 + V++P++E+ SF + ++E K+ L++++++ G +T+ DC +S +S LD Sbjct: 8 VKQVVEPILEKHSFYLFDVEFVKENKSWYLRVYIDKK-GGITIDDCVLVSDELSEKLDAM 66 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + I Y LEVSSPG +RP+ ++ + G + + + + G + + Sbjct: 67 DPDPIPQAYFLEVSSPGAERPLRNDAELKQAIGEYIHVSLYQNLNGNKTFEGILKSLDDD 126 Query: 142 GFFLEKEKRGEKDMNEL 158 L+ +K G++D E+ Sbjct: 127 KLVLQNDKWGKQDTLEV 143 >gi|297588446|ref|ZP_06947089.1| conserved hypothetical protein [Finegoldia magna ATCC 53516] gi|297573819|gb|EFH92540.1| conserved hypothetical protein [Finegoldia magna ATCC 53516] Length = 154 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 3/124 (2%) Query: 29 IQPVIEE--MSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 + P+IE+ + F V+ S KN+L ++E+D+G +++ DCE ++ I+ LD + I Sbjct: 14 LSPLIEDTGIDFYDVEYSNQNGKNIL-TFYIEKDEGLISIDDCELINNRITDKLDEIDPI 72 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE 146 Y LE++S I P R DF + G+VV + K++ G + ++ LE Sbjct: 73 SDPYYLEIASVDITTPFTRDKDFKKNLGNVVIVNLYQKLDSKKEFKGILKDFNDQEISLE 132 Query: 147 KEKR 150 EK Sbjct: 133 LEKN 136 >gi|315452832|ref|YP_004073102.1| ribosome maturation factor rimP [Helicobacter felis ATCC 49179] gi|315131884|emb|CBY82512.1| ribosome maturation factor rimP [Helicobacter felis ATCC 49179] Length = 156 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 47/78 (60%) Query: 45 LLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMV 104 L E + +L+I ++ +G +L C+E S ISP+LDV I G Y LEVSS G++R + Sbjct: 27 LKENQTDILRISIKALEGPTSLDVCQEASLLISPLLDVHAPIAGSYTLEVSSMGLERTLS 86 Query: 105 RKSDFLRWNGHVVACEIV 122 ++ F G ++ C+I+ Sbjct: 87 KRRHFELSIGELIECKIL 104 >gi|322387177|ref|ZP_08060787.1| hypothetical protein HMPREF9423_0185 [Streptococcus infantis ATCC 700779] gi|321141706|gb|EFX37201.1| hypothetical protein HMPREF9423_0185 [Streptococcus infantis ATCC 700779] Length = 183 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 78/154 (50%), Gaps = 11/154 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 + V++PVIE F V I + +++L IFV++ +G +TL D +L++ ISP+LD Sbjct: 35 VREVVEPVIE-APFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEIISPVLDTI 92 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI-GKIMGTSE 140 + Y LE++SPG++RP+ K G + + + DKQK+ G ++ E Sbjct: 93 KPDPFPEQYFLEITSPGLERPLKTKEAVAGAVGKYIHVGL-YQAIDKQKVFEGTLLSFEE 151 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + K + I ++ + ARL V Sbjct: 152 DELTMEYMDKTRKK----TVRIPYNLVSKARLAV 181 >gi|309799812|ref|ZP_07694019.1| conserved hypothetical protein [Streptococcus infantis SK1302] gi|308116528|gb|EFO53997.1| conserved hypothetical protein [Streptococcus infantis SK1302] Length = 159 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 78/152 (51%), Gaps = 7/152 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 + V++PVIE F V I + +++L IFV++ +G +TL D +L++ ISP+LD Sbjct: 11 VREVVEPVIE-APFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEIISPVLDTI 68 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI-GKIMGTSE 140 + Y LE++SPG++RP+ K G + + + DKQK+ G ++ E Sbjct: 69 KPDPFPEQYFLEITSPGLERPLKTKEAVAGAVGKYIHVGL-YQAIDKQKVFEGTLLAFEE 127 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +E + K ++ ++ + L+ +L Sbjct: 128 DELTMEYMDKTRKKTVQIPYSLVSKARLAVKL 159 >gi|256379833|ref|YP_003103493.1| hypothetical protein Amir_5837 [Actinosynnema mirum DSM 43827] gi|255924136|gb|ACU39647.1| protein of unknown function DUF150 [Actinosynnema mirum DSM 43827] Length = 174 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 70/130 (53%), Gaps = 13/130 (10%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE----EKNLLLQIFVERDDGNMTLRDCEELSQAI 76 LA ++ V++ +E + + + LL+ + L+++ V+ D+G + L + + S+A+ Sbjct: 9 LAAQLTPVVREAVEAIGY---DLELLDVNQAGRRRLVKVVVDGDEG-IGLDEVAQASRAV 64 Query: 77 SPILDV-ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 S LD E++I G Y LEV+SPG DRP+ R +LR +V + ++ + G++ Sbjct: 65 SAALDANEHLIAGPYTLEVTSPGADRPLTRPRHWLRARLRLVK----VKQPEQVEWFGRV 120 Query: 136 MGTSETGFFL 145 +TG L Sbjct: 121 GDCDDTGVVL 130 >gi|294649081|ref|ZP_06726524.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC 19194] gi|292825027|gb|EFF83787.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC 19194] Length = 174 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 47/88 (53%) Query: 66 LRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS 125 ++DC ++Q + +LDV + I G Y LEVSSPG DRP + S + G VA ++ + Sbjct: 69 VQDCVLVTQQVGAMLDVHDPISGEYALEVSSPGWDRPFFQLSQMSGYIGQQVALRLIAAV 128 Query: 126 GDKQKLIGKIMGTSETGFFLEKEKRGEK 153 +++K K++ ++ E G + Sbjct: 129 ENRRKFQAKLLSVDLENEMIQVEVEGAQ 156 >gi|146321699|ref|YP_001201410.1| hypothetical protein SSU98_1852 [Streptococcus suis 98HAH33] gi|259586202|sp|A4W3S1|RIMP_STRS2 RecName: Full=Ribosome maturation factor rimP gi|145692505|gb|ABP93010.1| unknown protein [Streptococcus suis 98HAH33] gi|292559122|gb|ADE32123.1| hypothetical protein SSGZ1_1667 [Streptococcus suis GZ1] Length = 158 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 67/128 (52%), Gaps = 9/128 (7%) Query: 50 NLLLQIFVERDDGNMTLRDCEELSQAISPILDV--ENIIEGHYRLEVSSPGIDRPMVRKS 107 + +L IFV+++ G ++L+D +LS+ ISPILD + Y LEV+SPG++RP+ Sbjct: 35 DYVLSIFVDKE-GGISLQDTADLSEKISPILDTIKPDPFPDQYMLEVTSPGLERPLKTAD 93 Query: 108 DFLRWNGHVVACEIVLSSGDKQKLI-GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDS 166 + G + ++ + DK K+ G ++ T +E + K ++ I + + Sbjct: 94 AVEKAVGKYIHVKL-YQAIDKIKVFEGTLLSFDGTDLIMEYMDKTRKK----EVTIPYQT 148 Query: 167 LLSARLIV 174 + ARL V Sbjct: 149 VAKARLAV 156 >gi|300813715|ref|ZP_07094035.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512172|gb|EFK39352.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 153 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 2/127 (1%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 I + Q EE+ + V I + K+ LL IF+ + +G + L DC ++S I Sbjct: 5 SFKNQIFKIAQVSAEELGYEIVDIEYQKGNKHDLLSIFIFKKEG-IDLDDCTKMSHNIEK 63 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LD I+ Y LE+SSPG+DRP+ K D+ R + V ++ K++ +G + Sbjct: 64 NLDNLEILTRPYYLEISSPGLDRPIKTKDDYRRNLENEVEVKLYGPYNGKKEYVGILKDY 123 Query: 139 SETGFFL 145 +E + Sbjct: 124 NEHNVII 130 >gi|28210958|ref|NP_781902.1| hypothetical protein CTC01272 [Clostridium tetani E88] gi|34222839|sp|Q895K1|RIMP_CLOTE RecName: Full=Ribosome maturation factor rimP gi|28203397|gb|AAO35839.1| protein associated with NUS operon [Clostridium tetani E88] Length = 153 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 53/81 (65%), Gaps = 2/81 (2%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 ++ + +P++ ++ + + + E K L+I+++ + G + L DCE++S+A+S +LD Sbjct: 9 NLKELTEPIVNDLDYELYYLEFVNENKENYLRIYIDSESG-IGLEDCEKVSRAVSAMLDE 67 Query: 83 ENIIEGHYRLEVSSPGIDRPM 103 ++ I+ Y LEVSSPG++R + Sbjct: 68 KDPIDTSYYLEVSSPGLERQL 88 >gi|296877070|ref|ZP_06901111.1| protein of hypothetical function DUF150 [Streptococcus parasanguinis ATCC 15912] gi|312867870|ref|ZP_07728075.1| conserved hypothetical protein [Streptococcus parasanguinis F0405] gi|296431931|gb|EFH17737.1| protein of hypothetical function DUF150 [Streptococcus parasanguinis ATCC 15912] gi|311096625|gb|EFQ54864.1| conserved hypothetical protein [Streptococcus parasanguinis F0405] Length = 159 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 79/154 (51%), Gaps = 11/154 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILD-- 81 ++ VIQP I+E F V + + + +L IFV++ +G +TL D +L++ ISP+LD Sbjct: 11 VTEVIQPAIKE-PFELVDVEYGKMGGDYVLSIFVDKPEG-ITLNDTADLTEIISPLLDQI 68 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI-GKIMGTSE 140 + Y LEV+SPG++RP+ K G V + + +KQK+ G ++G E Sbjct: 69 KPDPFPEQYFLEVTSPGLERPLKTKEALEGAVGKYVNISL-YKAVEKQKVFEGNLVGFEE 127 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + K + I ++ + ARL V Sbjct: 128 DVLTIEYMDKTRKK----TVDIPYNLVSKARLAV 157 >gi|304414227|ref|ZP_07395595.1| hypothetical protein REG_1311 [Candidatus Regiella insecticola LSR1] gi|304283441|gb|EFL91837.1| hypothetical protein REG_1311 [Candidatus Regiella insecticola LSR1] Length = 154 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/111 (26%), Positives = 61/111 (54%), Gaps = 1/111 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I ++ + + V + + + L+I+++ DG +T+ C ++S +S +LDVE Sbjct: 12 LTEIISAPVKALGHKLVGVEFIPGRQSTLRIYIDNCDG-VTVDMCADVSYQVSAVLDVEE 70 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I Y LEVSSPG++R + D+ + G + + ++ +++K G I Sbjct: 71 PITCPYNLEVSSPGLERLLFTAEDYTDYLGERINLTLRIAMQNRRKWQGII 121 >gi|223934078|ref|ZP_03626027.1| protein of unknown function DUF150 [Streptococcus suis 89/1591] gi|253752515|ref|YP_003025656.1| hypothetical protein SSUSC84_1671 [Streptococcus suis SC84] gi|253754341|ref|YP_003027482.1| hypothetical protein SSU1646 [Streptococcus suis P1/7] gi|253756275|ref|YP_003029415.1| hypothetical protein SSUBM407_1719 [Streptococcus suis BM407] gi|302024449|ref|ZP_07249660.1| hypothetical protein Ssui0_07814 [Streptococcus suis 05HAS68] gi|330833474|ref|YP_004402299.1| hypothetical protein SSUST3_1700 [Streptococcus suis ST3] gi|223897248|gb|EEF63660.1| protein of unknown function DUF150 [Streptococcus suis 89/1591] gi|251816804|emb|CAZ52447.1| conserved hypothetical protein [Streptococcus suis SC84] gi|251818739|emb|CAZ56575.1| conserved hypothetical protein [Streptococcus suis BM407] gi|251820587|emb|CAR47343.1| conserved hypothetical protein [Streptococcus suis P1/7] gi|319758924|gb|ADV70866.1| hypothetical protein SSUJS14_1808 [Streptococcus suis JS14] gi|329307697|gb|AEB82113.1| hypothetical protein SSUST3_1700 [Streptococcus suis ST3] Length = 156 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 67/128 (52%), Gaps = 9/128 (7%) Query: 50 NLLLQIFVERDDGNMTLRDCEELSQAISPILDV--ENIIEGHYRLEVSSPGIDRPMVRKS 107 + +L IFV+++ G ++L+D +LS+ ISPILD + Y LEV+SPG++RP+ Sbjct: 33 DYVLSIFVDKE-GGISLQDTADLSEKISPILDTIKPDPFPDQYMLEVTSPGLERPLKTAD 91 Query: 108 DFLRWNGHVVACEIVLSSGDKQKLI-GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDS 166 + G + ++ + DK K+ G ++ T +E + K ++ I + + Sbjct: 92 AVEKAVGKYIHVKL-YQAIDKIKVFEGTLLSFDGTDLIMEYMDKTRKK----EVTIPYQT 146 Query: 167 LLSARLIV 174 + ARL V Sbjct: 147 VAKARLAV 154 >gi|46578926|ref|YP_009734.1| hypothetical protein DVU0511 [Desulfovibrio vulgaris str. Hildenborough] gi|120603473|ref|YP_967873.1| hypothetical protein Dvul_2430 [Desulfovibrio vulgaris DP4] gi|51316683|sp|Q72EQ8|RIMP_DESVH RecName: Full=Ribosome maturation factor rimP gi|166987475|sp|A1VG80|RIMP_DESVV RecName: Full=Ribosome maturation factor rimP gi|46448338|gb|AAS94993.1| conserved hypothetical protein [Desulfovibrio vulgaris str. Hildenborough] gi|120563702|gb|ABM29446.1| protein of unknown function DUF150 [Desulfovibrio vulgaris DP4] gi|311232784|gb|ADP85638.1| protein of unknown function DUF150 [Desulfovibrio vulgaris RCH1] Length = 172 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 4/157 (2%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L I+ + P + + I L ++++FV+ +G +T+ C E+S+ + Sbjct: 5 ALDATIADMAGPFLASLGLELWGIELSYGGRTVVRLFVDGPEG-VTIDQCAEVSRHVGLA 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD---KQKLIGKIM 136 L+VE++I Y LEVSSPG++RP R + G + ++ + + ++K G+++ Sbjct: 64 LEVEDVISSAYVLEVSSPGLERPFFRAEQMSPYVGRQIELTLIDPTPEWPGRRKFRGELL 123 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L E + E + S+ + A LI Sbjct: 124 AVEGDTVVLRPEGAPAPEAEEAVLRTSWQGVRKANLI 160 >gi|148651971|ref|YP_001279064.1| hypothetical protein PsycPRwf_0155 [Psychrobacter sp. PRwf-1] gi|172048444|sp|A5WBS3|RIMP_PSYWF RecName: Full=Ribosome maturation factor rimP gi|148571055|gb|ABQ93114.1| protein of unknown function DUF150 [Psychrobacter sp. PRwf-1] Length = 166 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 10/94 (10%) Query: 52 LLQIFVER------DDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVR 105 LL+I++E D +T+ +C ++ +S +L+V + I G Y LEVSSPG+DRP Sbjct: 38 LLRIYIEALPEDKAADKQVTIENCAAVTHQVSGVLEVHDPIAGEYVLEVSSPGLDRPFFA 97 Query: 106 KSDFLRWNGHVVACEIVLSSGD----KQKLIGKI 135 + G + ++ + G ++K+ GK+ Sbjct: 98 PEQMTDYMGQTINLRLIQAVGSGSSKRRKVTGKL 131 >gi|229552420|ref|ZP_04441145.1| protein of hypothetical function DUF150 [Lactobacillus rhamnosus LMS2-1] gi|229314157|gb|EEN80130.1| protein of hypothetical function DUF150 [Lactobacillus rhamnosus LMS2-1] Length = 167 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 56/88 (63%), Gaps = 4/88 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++++++P++++ F + ++E L++++++ G +TL +C +S+A+S LD Sbjct: 18 VTALVKPILDDHHFYLTDVEFVKEGGGWYLRVYIDKP-GGITLDECVLVSEALSEQLDAI 76 Query: 84 NI--IEGHYRLEVSSPGIDRPMVRKSDF 109 N I Y LEVSSPG +RP+ R++D+ Sbjct: 77 NPDPIPQQYFLEVSSPGAERPLKRETDY 104 >gi|297170975|gb|ADI21990.1| uncharacterized protein conserved in bacteria [uncultured myxobacterium HF0200_01L06] Length = 170 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 9/151 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRD-CEELSQAISPILDV 82 ++ ++I+PV+E+ V +L ++ I +G D C E+S+ + LD Sbjct: 8 ELRTLIEPVLEDHGCELVDTIVLNRPKVVRIIIDRASEGRGVGIDLCAEISREVGTQLDA 67 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 IEG YRLEVSSPG+ R + R+ DF G V +++ G+++ E G Sbjct: 68 AEAIEGSYRLEVSSPGLHRVLSREKDFRAACGQNVNVTTKGLIDGRRRFNGQLL---EFG 124 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + +++ +++ I FD + A L+ Sbjct: 125 DGLAR-----VEVDGVRVGIPFDQIEKANLV 150 >gi|209527730|ref|ZP_03276226.1| protein of unknown function DUF150 [Arthrospira maxima CS-328] gi|209491851|gb|EDZ92210.1| protein of unknown function DUF150 [Arthrospira maxima CS-328] Length = 153 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 53/103 (51%) Query: 48 EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKS 107 +K +L++ + + + +L DCE +S+A+ LD ++I Y LEVSSPG+ R + Sbjct: 33 QKPPVLRVDIRNLEQDTSLEDCERMSRALEEQLDAVDVIPDAYILEVSSPGVSRSLSCDR 92 Query: 108 DFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKR 150 DF+ + G V ++ GK++G E + ++ R Sbjct: 93 DFISFKGFPVTVTTSEPYKGHKQQSGKLVGRDEMAVHINQKGR 135 >gi|226951827|ref|ZP_03822291.1| YhbC family protein [Acinetobacter sp. ATCC 27244] gi|226837367|gb|EEH69750.1| YhbC family protein [Acinetobacter sp. ATCC 27244] Length = 174 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 47/88 (53%) Query: 64 MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVL 123 + ++DC ++Q + +LDV + I G Y LEVSSPG DRP + S + G VA ++ Sbjct: 67 IGVQDCVLVTQQVGAMLDVHDPISGEYALEVSSPGWDRPFFQLSQMSGYIGQQVALRLIA 126 Query: 124 SSGDKQKLIGKIMGTSETGFFLEKEKRG 151 + +++K K++ ++ E G Sbjct: 127 AVENRRKFQAKLLSVDLENEMIQVEVEG 154 >gi|71908072|ref|YP_285659.1| hypothetical protein Daro_2454 [Dechloromonas aromatica RCB] gi|91208406|sp|Q47D92|RIMP_DECAR RecName: Full=Ribosome maturation factor rimP gi|71847693|gb|AAZ47189.1| Protein of unknown function DUF150 [Dechloromonas aromatica RCB] Length = 146 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/152 (23%), Positives = 82/152 (53%), Gaps = 13/152 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVER--DDGNMTLRDCEELSQAISPILD 81 D++++++ + + + V + + + +++F++ + + + DC ++S ++ + + Sbjct: 2 DLNTLLETTVVGLGYELVDVEM-SPRGRTIRVFIDAPAKETGIDVEDCAKVSNQLTRVFE 60 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VEN RLE+SSPG+DR + + +DF R++G + ++ + G ++ G+++G + Sbjct: 61 VENF--DFDRLEISSPGLDRVVKKAADFERFSGQEIQIKVRIPQGGRRNFQGELLGLKDG 118 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L R KD EL+ F ++ ARL+ Sbjct: 119 KVGL----RLAKDDVELE----FTNIEKARLV 142 >gi|322391411|ref|ZP_08064881.1| essential protein [Streptococcus peroris ATCC 700780] gi|321145837|gb|EFX41228.1| essential protein [Streptococcus peroris ATCC 700780] Length = 207 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 78/154 (50%), Gaps = 11/154 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 + V++PVIE F V I + +++L IFV++ +G +TL D +L++ ISP+LD Sbjct: 59 VREVVEPVIE-APFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEIISPVLDTI 116 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI-GKIMGTSE 140 + Y LE++SPG++RP+ K G + + + DKQK+ G ++ E Sbjct: 117 KPDPFPEQYFLEITSPGLERPLKTKEAVAGAVGKYIHVGL-YQAIDKQKVFEGTLLSFEE 175 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + K + I ++ + ARL V Sbjct: 176 DELTMEYMDKTRKK----TVQIPYNLVSKARLAV 205 >gi|293610133|ref|ZP_06692434.1| hypothetical protein HMPREF0013_02285 [Acinetobacter sp. SH024] gi|292827365|gb|EFF85729.1| hypothetical protein HMPREF0013_02285 [Acinetobacter sp. SH024] gi|325124306|gb|ADY83829.1| hypothetical protein BDGL_003243 [Acinetobacter calcoaceticus PHEA-2] Length = 174 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 18/132 (13%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVER-----------DDGNMTL------ 66 + +I P +E I L + K LL+I++++ +DG + L Sbjct: 10 LHDLIVPAVEACGVDLWGIEFLPQGKRSLLRIYIDKAVSEDAEPVINEDGEVELGRGIGV 69 Query: 67 RDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 +DC ++Q + +LDV + I G Y LEVSSPG DRP + + G +A ++ + Sbjct: 70 QDCVRVTQQVGAMLDVHDPISGEYSLEVSSPGWDRPFFQLEQLQGYIGQQIALRLIAAVE 129 Query: 127 DKQKLIGKIMGT 138 +++K K++ Sbjct: 130 NRRKFQAKLIAV 141 >gi|262374025|ref|ZP_06067302.1| conserved hypothetical protein [Acinetobacter junii SH205] gi|262311036|gb|EEY92123.1| conserved hypothetical protein [Acinetobacter junii SH205] Length = 174 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 48/89 (53%) Query: 64 MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVL 123 + ++DC ++Q + +LDV + I G Y LEVSSPG DRP + + + G VA ++ Sbjct: 67 IGVQDCVLVTQQVGAMLDVHDPISGEYALEVSSPGWDRPFFQLNQLPAYIGQQVALRLIA 126 Query: 124 SSGDKQKLIGKIMGTSETGFFLEKEKRGE 152 + +++K K++ ++ E G+ Sbjct: 127 AVENRRKFQAKLLSVDLENELIQVEVEGK 155 >gi|315924375|ref|ZP_07920597.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC 23263] gi|315622254|gb|EFV02213.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC 23263] Length = 162 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 67/124 (54%), Gaps = 8/124 (6%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSD 108 K +L ++++R +G ++L DCE++S+ IS LD + I Y L+VSSPG++R + R Sbjct: 43 KKRILTVYIDRKEG-ISLEDCEKVSREISAFLDAADPIAETYTLQVSSPGLERKLTRLKH 101 Query: 109 FLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLL 168 + G ++ ++ + D QK + ++ F++ EK ++ + + I F S+ Sbjct: 102 YRAVVGEMIDLKL-FEAIDGQKQLCAVLR------FVDDEKIVVQEGDAEPLTIPFKSIA 154 Query: 169 SARL 172 A L Sbjct: 155 KASL 158 >gi|212639525|ref|YP_002316045.1| hypothetical protein Aflv_1699 [Anoxybacillus flavithermus WK1] gi|212561005|gb|ACJ34060.1| Uncharacterized conserved protein, YhbC family [Anoxybacillus flavithermus WK1] Length = 200 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 2/94 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ P++ M V I ++E KN L++F++ G + + C +S+ +S LD Sbjct: 52 VEELVTPIVTHMGLELVDIEYVKEGKNWFLRVFIDSPTG-IDIDQCGVVSEQLSEKLDEI 110 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + I +Y LEVSSPG +RP+ + DF R G V Sbjct: 111 DPIPHNYFLEVSSPGAERPLKKARDFERAVGKNV 144 >gi|251797401|ref|YP_003012132.1| hypothetical protein Pjdr2_3411 [Paenibacillus sp. JDR-2] gi|247545027|gb|ACT02046.1| protein of unknown function DUF150 [Paenibacillus sp. JDR-2] Length = 153 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 55/94 (58%), Gaps = 3/94 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +++ P ++ F V I ++E N L++FV+++ G + + +C ++S+ +S LD Sbjct: 10 VEAMVTPFLDSNGFELVDIEYVKEGSNYFLRVFVDKE-GGIDIDECGKVSEFLSEELDKN 68 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNG-HV 116 + + Y LEVSSPG +RP+ + D + G HV Sbjct: 69 DPVSDAYFLEVSSPGAERPLKKPDDVRKAVGKHV 102 >gi|15902521|ref|NP_358071.1| hypothetical protein spr0477 [Streptococcus pneumoniae R6] gi|116516675|ref|YP_815984.1| hypothetical protein SPD_0478 [Streptococcus pneumoniae D39] gi|149002223|ref|ZP_01827165.1| hypothetical protein CGSSp14BS69_01239 [Streptococcus pneumoniae SP14-BS69] gi|149005662|ref|ZP_01829401.1| hypothetical protein CGSSp18BS74_08855 [Streptococcus pneumoniae SP18-BS74] gi|149021507|ref|ZP_01835562.1| hypothetical protein CGSSp23BS72_06564 [Streptococcus pneumoniae SP23-BS72] gi|169833553|ref|YP_001694039.1| hypothetical protein SPH_0649 [Streptococcus pneumoniae Hungary19A-6] gi|307126755|ref|YP_003878786.1| hypothetical protein SP670_0615 [Streptococcus pneumoniae 670-6B] gi|34222871|sp|Q8DQV6|RIMP_STRR6 RecName: Full=Ribosome maturation factor rimP gi|122279130|sp|Q04LW4|RIMP_STRP2 RecName: Full=Ribosome maturation factor rimP gi|226707991|sp|B1IA76|RIMP_STRPI RecName: Full=Ribosome maturation factor rimP gi|15458047|gb|AAK99281.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] gi|116077251|gb|ABJ54971.1| conserved hypothetical protein [Streptococcus pneumoniae D39] gi|147759538|gb|EDK66529.1| hypothetical protein CGSSp14BS69_01239 [Streptococcus pneumoniae SP14-BS69] gi|147762602|gb|EDK69562.1| hypothetical protein CGSSp18BS74_08855 [Streptococcus pneumoniae SP18-BS74] gi|147930203|gb|EDK81188.1| hypothetical protein CGSSp23BS72_06564 [Streptococcus pneumoniae SP23-BS72] gi|168996055|gb|ACA36667.1| conserved hypothetical protein [Streptococcus pneumoniae Hungary19A-6] gi|306483817|gb|ADM90686.1| conserved hypothetical protein [Streptococcus pneumoniae 670-6B] gi|332076984|gb|EGI87446.1| hypothetical protein SPAR148_0517 [Streptococcus pneumoniae GA17545] Length = 159 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 77/154 (50%), Gaps = 11/154 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 + V++PVIE F V I + +++L IFV++ +G +TL D +L++ ISP+LD Sbjct: 11 VREVVEPVIE-APFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEIISPVLDTI 68 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI-GKIMGTSE 140 + Y LE++SPG++RP+ K G + + + DKQK+ G ++ E Sbjct: 69 KPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGL-YQAIDKQKVFEGTLLAFEE 127 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + K + I + + ARL V Sbjct: 128 DELTMEYMDKTRKK----TVRIPYSLVSKARLAV 157 >gi|259585704|sp|B7GG79|RIMP_ANOFW RecName: Full=Ribosome maturation factor rimP Length = 156 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 2/91 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ P++ M V I ++E KN L++F++ G + + C +S+ +S LD Sbjct: 8 VEELVTPIVTHMGLELVDIEYVKEGKNWFLRVFIDSPTG-IDIDQCGVVSEQLSEKLDEI 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNG 114 + I +Y LEVSSPG +RP+ + DF R G Sbjct: 67 DPIPHNYFLEVSSPGAERPLKKARDFERAVG 97 >gi|289167248|ref|YP_003445515.1| hypothetical protein smi_0375 [Streptococcus mitis B6] gi|288906813|emb|CBJ21647.1| conserved hypothetical protein [Streptococcus mitis B6] Length = 159 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 78/152 (51%), Gaps = 7/152 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 + V++PVI+ F V I + +++L IFV++ +G +TL D +L++ ISP+LD Sbjct: 11 VREVVEPVIQS-PFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEVISPVLDTI 68 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI-GKIMGTSE 140 + Y LE++SPG++RP+ K G + + + DKQK+ G ++ E Sbjct: 69 KPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGL-YQAIDKQKVFEGTLLAFEE 127 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +E + K ++ ++ + L+ +L Sbjct: 128 DELTMEYMDKTRKKTVQIPYSLVSKARLAVKL 159 >gi|259585824|sp|A8ZZ67|RIMP_DESOH RecName: Full=Ribosome maturation factor rimP Length = 161 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 45/80 (56%) Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 D +TL DC +S+ ++ +LDV +Y LEVSS G++RP+ ++ DF R+ G V Sbjct: 50 DRGVTLEDCAGISRQVNGLLDVYLPELDNYTLEVSSAGLERPLAKEIDFERFAGSRVKIR 109 Query: 121 IVLSSGDKQKLIGKIMGTSE 140 D++ G ++G S+ Sbjct: 110 TAAPVSDRKNFTGILLGVSD 129 >gi|199597101|ref|ZP_03210533.1| hypothetical protein LRH_07196 [Lactobacillus rhamnosus HN001] gi|258508611|ref|YP_003171362.1| hypothetical protein LGG_01616 [Lactobacillus rhamnosus GG] gi|258539790|ref|YP_003174289.1| hypothetical protein LC705_01599 [Lactobacillus rhamnosus Lc 705] gi|199591905|gb|EDY99979.1| hypothetical protein LRH_07196 [Lactobacillus rhamnosus HN001] gi|257148538|emb|CAR87511.1| Conserved hypotehtical protein [Lactobacillus rhamnosus GG] gi|257151466|emb|CAR90438.1| Conserved hypotehtical protein [Lactobacillus rhamnosus Lc 705] gi|259649918|dbj|BAI42080.1| conserved hypothetical protein [Lactobacillus rhamnosus GG] Length = 159 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 56/88 (63%), Gaps = 4/88 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++++++P++++ F + ++E L++++++ G +TL +C +S+A+S LD Sbjct: 10 VTALVKPILDDHHFYLTDVEFVKEGGGWYLRVYIDKP-GGITLDECVLVSEALSEQLDAI 68 Query: 84 NI--IEGHYRLEVSSPGIDRPMVRKSDF 109 N I Y LEVSSPG +RP+ R++D+ Sbjct: 69 NPDPIPQQYFLEVSSPGAERPLKRETDY 96 >gi|293374144|ref|ZP_06620478.1| SP14.3 protein [Turicibacter sanguinis PC909] gi|325837436|ref|ZP_08166418.1| hypothetical protein HMPREF9402_1291 [Turicibacter sp. HGF1] gi|292647247|gb|EFF65223.1| SP14.3 protein [Turicibacter sanguinis PC909] gi|325490968|gb|EGC93266.1| hypothetical protein HMPREF9402_1291 [Turicibacter sp. HGF1] Length = 155 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/156 (23%), Positives = 74/156 (47%), Gaps = 6/156 (3%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + +++P+ E + V + ++E +N L+++V+ +G + + C ++++A+S Sbjct: 3 NIVAKTEELVKPICEANNVELVDVEYVKEGQNFFLRVYVDTPEG-IDIDQCADVAEALSE 61 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LD + IE Y LEVSSPG +RP+ K G + + + +++ G ++ Sbjct: 62 KLDQHDYIEDEYMLEVSSPGAERPLKTKEAVAESIGAYINVKTYKAIDGQKEFEGHLIKF 121 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E LE + K + + I +D RL + Sbjct: 122 EEDILTLEVLVKTRKKV----VEIPYDKAAKVRLAI 153 >gi|291532988|emb|CBL06101.1| Uncharacterized protein conserved in bacteria [Megamonas hypermegale ART12/1] Length = 112 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 54/91 (59%), Gaps = 5/91 (5%) Query: 21 LAGDISSVIQPVIEEM----SFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAI 76 +A + ++ + EE+ + V + ++E++ L+++++++ G + L DC+E+S + Sbjct: 1 MANRVEEAVEKIAEEILANTDYELVDVEYVKERDWFLRVYIDKE-GGIGLDDCQEVSGLL 59 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKS 107 L+ NII Y LEVSSPG+DR + ++ Sbjct: 60 DEKLEELNIINDRYILEVSSPGLDRALKKEK 90 >gi|109947687|ref|YP_664915.1| hypothetical protein Hac_1157 [Helicobacter acinonychis str. Sheeba] gi|122973267|sp|Q17WR0|RIMP_HELAH RecName: Full=Ribosome maturation factor rimP gi|109714908|emb|CAJ99916.1| conserved hypothetical protein [Helicobacter acinonychis str. Sheeba] Length = 146 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 60/95 (63%), Gaps = 1/95 (1%) Query: 29 IQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 I+ VIE + + +SL++E + +L++ ++ +G ++L +C+++S+ ISP+LDV + ++ Sbjct: 9 IEGVIESLGYLLYDVSLIKESEQHILRVSLKNPNGAVSLDNCQQVSEIISPLLDVCDFLK 68 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV 122 Y LEVSS G++R + F G VA +++ Sbjct: 69 DAYILEVSSMGLERTLKTPKHFKLSLGEKVAVKLM 103 >gi|291296310|ref|YP_003507708.1| hypothetical protein Mrub_1931 [Meiothermus ruber DSM 1279] gi|290471269|gb|ADD28688.1| protein of unknown function DUF150 [Meiothermus ruber DSM 1279] Length = 159 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 15/151 (9%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVER- 59 ME H L + G A S V + V+ + + ++ L KN +L + +ER Sbjct: 1 MEPEHPLQA----------GGAPQWSQVAESVLAPLGYEVLEAGLKSGKNPVLLVRIERK 50 Query: 60 DDGNMTLRDCEELSQAISPILD-VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVA 118 D+ +++ D E ++A+S LD +E ++ Y L+V SPG DRP+ F R+ G + Sbjct: 51 DEVPISIADLERANRALSAHLDTLEALLPARYLLQVESPGADRPLFTARHFERFAG--LK 108 Query: 119 CEIVLSSGDKQKLIGKIMGTSETGFFLEKEK 149 + G+ IG + G F LEK++ Sbjct: 109 VRVRSPQGNFTGRIGAVRGDM-VEFLLEKDE 138 >gi|229820978|ref|YP_002882504.1| protein of unknown function DUF150 [Beutenbergia cavernae DSM 12333] gi|259585729|sp|C5BWS6|RIMP_BEUC1 RecName: Full=Ribosome maturation factor rimP gi|229566891|gb|ACQ80742.1| protein of unknown function DUF150 [Beutenbergia cavernae DSM 12333] Length = 162 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 9/136 (6%) Query: 18 DMGLAGDISSVIQPVIEE--MSFRSVQISLLEEKNLLLQIFVERDDGNMTL--RDCEELS 73 D L G + +++PV + V +S + + ++ ++ DG L D + S Sbjct: 6 DTALLGRLRDLLEPVAAGCGLHLEDVAVSPAGRRRRV-RVTLDLADGPGALGSNDLADAS 64 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 +A+S LD +++ G Y LEVS+PG DRP+ + F R G +V + L++G + G Sbjct: 65 RAVSAALDDADVVTGPYVLEVSTPGTDRPLTQPRHFRRAQGRLV--TLTLAAG--THVSG 120 Query: 134 KIMGTSETGFFLEKEK 149 +++ + G + + Sbjct: 121 RLLSADDDGIHVRTDA 136 >gi|158523047|ref|YP_001530917.1| hypothetical protein Dole_3037 [Desulfococcus oleovorans Hxd3] gi|158511873|gb|ABW68840.1| protein of unknown function DUF150 [Desulfococcus oleovorans Hxd3] Length = 181 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 67/132 (50%), Gaps = 4/132 (3%) Query: 13 PRIFGDMG-LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVER--DDGNMTLRD 68 PR+ G + + +++PV V + +E + +L++++ D +TL D Sbjct: 18 PRLMGGGNPVVAQMWKLVEPVCSAEGMELVFVEFNKESQGRVLRLYLASGVPDRGVTLED 77 Query: 69 CEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 C +S+ ++ +LDV +Y LEVSS G++RP+ ++ DF R+ G V D+ Sbjct: 78 CAGISRQVNGLLDVYLPELDNYTLEVSSAGLERPLAKEIDFERFAGSRVKIRTAAPVSDR 137 Query: 129 QKLIGKIMGTSE 140 + G ++G S+ Sbjct: 138 KNFTGILLGVSD 149 >gi|312194981|ref|YP_004015042.1| hypothetical protein FraEuI1c_1099 [Frankia sp. EuI1c] gi|311226317|gb|ADP79172.1| protein of unknown function DUF150 [Frankia sp. EuI1c] Length = 277 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 7/96 (7%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDV--ENIIEGHYRLEVSSPGIDRPMVRKSDF 109 +L++ V+RDDG + L + S+ IS +LD E + G Y LEV+SPG+DRP+ + Sbjct: 52 VLRVAVDRDDG-IDLDAVADASRLISDLLDQVDEGGLAGAYVLEVTSPGVDRPLTEPRHW 110 Query: 110 LRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFL 145 R G +V V D ++G+++G + G L Sbjct: 111 RRARGRLVEARRV----DGTVVLGRVLGADDEGVDL 142 >gi|307707651|ref|ZP_07644132.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261] gi|322377699|ref|ZP_08052189.1| SP14.3 protein [Streptococcus sp. M334] gi|307616364|gb|EFN95556.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261] gi|321281464|gb|EFX58474.1| SP14.3 protein [Streptococcus sp. M334] Length = 159 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 78/152 (51%), Gaps = 7/152 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 + V++PVI+ F V I + +++L IFV++ +G +TL D +L++ ISP+LD Sbjct: 11 VREVVEPVIQ-APFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEIISPVLDTI 68 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI-GKIMGTSE 140 + Y LE++SPG++RP+ K G + + + DKQK+ G ++ E Sbjct: 69 KPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGL-YQAIDKQKVFEGTLLAFEE 127 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +E + K ++ ++ + L+ +L Sbjct: 128 DELTMEYMDKTRKKTVQIPYSLVSKARLAVKL 159 >gi|126640414|ref|YP_001083398.1| hypothetical protein A1S_0334 [Acinetobacter baumannii ATCC 17978] Length = 157 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 17/112 (15%) Query: 45 LLEEKNLLLQIFVER-----------DDG------NMTLRDCEELSQAISPILDVENIIE 87 L + K LL+I+++R +DG + + DC ++Q + +LDV + I Sbjct: 14 LPQGKRSLLRIYIDRPVDENAEPVINEDGEVEQGRGIGVEDCVRVTQQVGAMLDVHDPIS 73 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 G Y LEVSSPG DRP + + G VA ++ + +++K K++ Sbjct: 74 GEYALEVSSPGWDRPFFQLEQLQGYIGQQVALRLIAAVENRRKFQAKLLAVD 125 >gi|297623579|ref|YP_003705013.1| hypothetical protein Trad_1348 [Truepera radiovictrix DSM 17093] gi|297164759|gb|ADI14470.1| protein of unknown function DUF150 [Truepera radiovictrix DSM 17093] Length = 146 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Query: 48 EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKS 107 ++N+LL+I RD G +T+ D E +Q S LD + EG YRLEV SPG +RP+ Sbjct: 29 KRNVLLRI-DRRDRGVVTMEDVERATQVFSLELDRLDPFEGAYRLEVESPGPERPLRTAE 87 Query: 108 DFLRWNG 114 F R++G Sbjct: 88 HFRRFSG 94 >gi|330466359|ref|YP_004404102.1| hypothetical protein VAB18032_11940 [Verrucosispora maris AB-18-032] gi|328809330|gb|AEB43502.1| hypothetical protein VAB18032_11940 [Verrucosispora maris AB-18-032] Length = 175 Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/158 (25%), Positives = 77/158 (48%), Gaps = 23/158 (14%) Query: 29 IQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE---- 83 I PV++ + +S+ + ++++ V+ D G + L ++S+A+S LD Sbjct: 2 IAPVVDSAGYDLEDLSVSRAGRRHVVRVIVDAD-GGINLDAVADVSRAVSAALDAAEESG 60 Query: 84 -NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI-------VLSSGDKQKLIGKI 135 +I+ G Y+LEVSSPG+DRP+ + R G +V + +GD+Q + G++ Sbjct: 61 GDIVAGEYQLEVSSPGVDRPLTLPRHWRRNVGRLVRVTVRGAGESGARPAGDRQ-VTGRV 119 Query: 136 MGTSETGFFLEKEKRGEK------DMNELQIAISFDSL 167 + + LE + GE+ D+ ++ + F L Sbjct: 120 VAADDESVALEVD--GERVQWPYADLGPGRVQVEFSRL 155 >gi|320108354|ref|YP_004183944.1| hypothetical protein AciPR4_3194 [Terriglobus saanensis SP1PR4] gi|319926875|gb|ADV83950.1| protein of unknown function DUF150 [Terriglobus saanensis SP1PR4] Length = 195 Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 3/98 (3%) Query: 47 EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEG--HYRLEVSSPGIDRPMV 104 E K L + VE G +T +DC + +LDVE ++ G Y LEVSSPGI+R + Sbjct: 59 ESKALPRGVPVEALSG-VTHQDCAAFATDFGTLLDVEELVPGTTEYTLEVSSPGIERKLF 117 Query: 105 RKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 + +D+ R+ G +V + + + G++ T T Sbjct: 118 KTADYERFAGSLVTLKTFQAINGTKNFTGRMTFTDGTA 155 >gi|293400741|ref|ZP_06644886.1| putative SP14.3 protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305767|gb|EFE47011.1| putative SP14.3 protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 155 Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 1/80 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I +I+P++ + +S +E KN +LQ+ + R DG+M + C +S+ IS LD Sbjct: 7 IKELIKPLLAQEDIELYDVSWQQEGKNRILQVAIMRKDGSMDIDTCAAMSEKISEKLDEV 66 Query: 84 NIIEGHYRLEVSSPGIDRPM 103 ++I Y LEV SPG +R + Sbjct: 67 DMIASEYFLEVCSPGAEREL 86 >gi|227529105|ref|ZP_03959154.1| protein of hypothetical function DUF150 [Lactobacillus vaginalis ATCC 49540] gi|227350949|gb|EEJ41240.1| protein of hypothetical function DUF150 [Lactobacillus vaginalis ATCC 49540] Length = 165 Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 55/90 (61%), Gaps = 4/90 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILD-- 81 +S + +P++ + + ++E K+ L+++V++D G +TL DC ++S +S LD Sbjct: 13 VSGLAKPILAKHDCYLYDLEFVKEGKSWYLRVYVDKD-GGVTLEDCADISDELSEALDNT 71 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 + I Y LEVSSPG +RP+ +++D+ R Sbjct: 72 EPDPIPQAYFLEVSSPGAERPLKKEADYER 101 >gi|86605174|ref|YP_473937.1| hypothetical protein CYA_0456 [Synechococcus sp. JA-3-3Ab] gi|123507667|sp|Q2JX22|RIMP_SYNJA RecName: Full=Ribosome maturation factor rimP gi|86553716|gb|ABC98674.1| conserved hypothetical protein [Synechococcus sp. JA-3-3Ab] Length = 157 Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 4/85 (4%) Query: 68 DCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD 127 DCE +SQA+ LD ++I GHY LEVSSPGI ++ DF+ + G A E+ + Sbjct: 55 DCEAMSQALEVELDRVDLIPGHYVLEVSSPGISNLLISDRDFVVFKG--FAVEVTVDPPY 112 Query: 128 KQKLI--GKIMGTSETGFFLEKEKR 150 K K + G ++G E L + R Sbjct: 113 KGKAVWSGHLLGRDEEKVALSLKGR 137 >gi|319944111|ref|ZP_08018389.1| hypothetical protein HMPREF0551_1236 [Lautropia mirabilis ATCC 51599] gi|319742605|gb|EFV95014.1| hypothetical protein HMPREF0551_1236 [Lautropia mirabilis ATCC 51599] Length = 208 Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 60/111 (54%), Gaps = 6/111 (5%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDD--GNMTLRDCEELSQAISPILDVENI 85 ++ PV+ M + V + + LL+I +E D +TL DCE +S+ +S + VE++ Sbjct: 1 MVDPVVSGMGYEVVDVEFV--AGGLLRITIENVDHAQPITLDDCERVSEQLSHLFLVEDV 58 Query: 86 IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 + RLE+SSPG+DR + R DF R+ G V + + ++ G ++ Sbjct: 59 --DYDRLEISSPGLDRRLRRPQDFARFTGDEVKLWLRMPQDGRRTFEGVLL 107 >gi|317010677|gb|ADU84424.1| Ribosome maturation factor rimP [Helicobacter pylori SouthAfrica7] Length = 146 Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 61/99 (61%), Gaps = 1/99 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I I+ VIE + + +SL++E ++ +L++ ++ +G ++L +C+++S+ ISP+LDV Sbjct: 5 IEERIEGVIESLGYLLYDVSLIKENEHNILRVSLKNPNGAVSLDNCQQVSEVISPLLDVC 64 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV 122 + ++ Y LEVSS G++R + F G V ++V Sbjct: 65 DFLKDAYILEVSSMGLERVLKTPKHFKLSLGEKVGVKLV 103 >gi|256847047|ref|ZP_05552493.1| conserved hypothetical protein [Lactobacillus coleohominis 101-4-CHN] gi|256715711|gb|EEU30686.1| conserved hypothetical protein [Lactobacillus coleohominis 101-4-CHN] Length = 159 Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 55/96 (57%), Gaps = 4/96 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 ++ ++QP++++ F ++E + L++++++ G +TL DC +S +S LD Sbjct: 10 VNELVQPILDQYDFYLFDTEFVKEGHSWYLRVYIDKT-GGITLEDCVNVSDQLSEALDNC 68 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + I Y LEVSSPG +RP+ ++ D+ R G + Sbjct: 69 DPDPIPQAYFLEVSSPGAERPLKKEEDYHRAIGEYI 104 >gi|221195857|ref|ZP_03568910.1| conserved hypothetical protein [Atopobium rimae ATCC 49626] gi|221184331|gb|EEE16725.1| conserved hypothetical protein [Atopobium rimae ATCC 49626] Length = 164 Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Query: 57 VERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHV 116 + D ++L + + IS LD ++ G + LEVSSPG+DRP+ R DF R++G Sbjct: 46 ADEDGKTISLDEVAAETGWISDALDEIDVFPGSFTLEVSSPGMDRPLRRVRDFERFSGSQ 105 Query: 117 VACEIVLSSGDKQKLIGKIMGTSETGFFLEKE 148 V+ + G +++ GK++G E LE + Sbjct: 106 VSLQTTALEG-RRRYTGKLLGIQENIVSLESD 136 >gi|108804246|ref|YP_644183.1| hypothetical protein Rxyl_1409 [Rubrobacter xylanophilus DSM 9941] gi|122381798|sp|Q1AW57|RIMP_RUBXD RecName: Full=Ribosome maturation factor rimP gi|108765489|gb|ABG04371.1| protein of unknown function DUF150 [Rubrobacter xylanophilus DSM 9941] Length = 152 Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 9/124 (7%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSD 108 + LL + V+R+ G + C + ++P L+ E +EVSSPGI+RP+ R S Sbjct: 32 RGPLLTLLVDREGGPVDHEFCARIISIVAPALEEEGY---SGMIEVSSPGIERPLTRPSH 88 Query: 109 FLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLL 168 F R+ G V + ++ G I ++ GF L + GE ++ + F S+ Sbjct: 89 FRRFIGRRVRVRVGEPVDGRRNFTGVIERVADAGFVLRLSEDGE------EVELPFGSVT 142 Query: 169 SARL 172 A L Sbjct: 143 RAHL 146 >gi|217031630|ref|ZP_03437135.1| hypothetical protein HPB128_21g188 [Helicobacter pylori B128] gi|298736659|ref|YP_003729185.1| hypothetical protein HPB8_1164 [Helicobacter pylori B8] gi|216946830|gb|EEC25426.1| hypothetical protein HPB128_21g188 [Helicobacter pylori B128] gi|298355849|emb|CBI66721.1| conserved hypothetical protein [Helicobacter pylori B8] Length = 146 Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 54/86 (62%), Gaps = 1/86 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I I+ VIE + + +SL++E + +L++ ++ +G ++L C+++S+ ISP+LDV Sbjct: 5 IEEKIEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEVISPLLDVC 64 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDF 109 + I+ Y LEVSS G++R + F Sbjct: 65 DFIQDAYTLEVSSMGLERTLKTPKHF 90 >gi|307637097|gb|ADN79547.1| transcription termination protein [Helicobacter pylori 908] gi|325995688|gb|ADZ51093.1| ribosome maturation factor [Helicobacter pylori 2018] gi|325997284|gb|ADZ49492.1| hypothetical protein hp2017_0406 [Helicobacter pylori 2017] Length = 146 Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 54/86 (62%), Gaps = 1/86 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I I+ VIE + + +SL++E + +L++ ++ +G ++L C+++S+ ISP+LDV Sbjct: 5 IEEKIEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEVISPLLDVC 64 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDF 109 + I+ Y LEVSS G++R + F Sbjct: 65 DFIQDAYTLEVSSMGLERTLKTPKHF 90 >gi|304384866|ref|ZP_07367212.1| protein of hypothetical function DUF150 [Pediococcus acidilactici DSM 20284] gi|304329060|gb|EFL96280.1| protein of hypothetical function DUF150 [Pediococcus acidilactici DSM 20284] Length = 168 Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 81/157 (51%), Gaps = 16/157 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I+ + +PVIE F+ V++ ++E + L+ ++++ G + + +C +S +S +LD + Sbjct: 19 ITELARPVIESHDFQLVEVEFVKEGQGWFLRFYIDKV-GGINIEECAMVSDELSELLDQQ 77 Query: 84 NI--IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + I Y LEVSSPG +RP+ K D G + + +S +KQK+ + + E Sbjct: 78 DPDPIPQAYFLEVSSPGAERPLKTKEDLAAAVGEYIHISL-YASINKQKVFEGYLKSFEN 136 Query: 142 GF----FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +L+K + E + ++++ + ARL + Sbjct: 137 DELVLDYLDKTRHKE-------LKVAYNQVAFARLAI 166 >gi|282882028|ref|ZP_06290669.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] gi|281298058|gb|EFA90513.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] Length = 153 Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 2/127 (1%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 I + Q EE+ + V I + K+ LL IF+ + +G + L DC +S I Sbjct: 5 SFKNQIFKIAQVSAEELGYEIVDIEYQKGNKHDLLSIFIFKKEG-IDLDDCTMMSHNIEK 63 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LD I+ Y LE+SSPG+DRP+ K D+ R + V ++ K++ +G + Sbjct: 64 NLDNLEILSRPYYLEISSPGLDRPIKTKDDYRRNLENEVEVKLYGPYNGKKEYVGILKDY 123 Query: 139 SETGFFL 145 +E + Sbjct: 124 NEHNVII 130 >gi|56752081|ref|YP_172782.1| hypothetical protein syc2072_d [Synechococcus elongatus PCC 6301] gi|81300832|ref|YP_401040.1| hypothetical protein Synpcc7942_2023 [Synechococcus elongatus PCC 7942] gi|81561540|sp|Q5N0A8|RIMP_SYNP6 RecName: Full=Ribosome maturation factor rimP gi|123556488|sp|Q31LL6|RIMP_SYNE7 RecName: Full=Ribosome maturation factor rimP gi|56687040|dbj|BAD80262.1| hypothetical protein [Synechococcus elongatus PCC 6301] gi|81169713|gb|ABB58053.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942] Length = 153 Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 1/127 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I + +P+ +++ VQ + +L++ + G+ L DCE +S++ LD Sbjct: 9 ILDLARPIADDLDLEVVQAVFHTNQSPPILRLDIRSRVGDTGLEDCERMSRSFELALDEA 68 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NII Y LE+SSPG+ + DFL + G V + D + G ++G Sbjct: 69 NIIPDAYVLEISSPGLSDTLESDRDFLSFKGFPVQVTSRSPNDDTVEQQGTLLGRDADSV 128 Query: 144 FLEKEKR 150 +L K R Sbjct: 129 YLNKRGR 135 >gi|167772659|ref|ZP_02444712.1| hypothetical protein ANACOL_04040 [Anaerotruncus colihominis DSM 17241] gi|167665137|gb|EDS09267.1| hypothetical protein ANACOL_04040 [Anaerotruncus colihominis DSM 17241] Length = 159 Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 28/115 (24%), Positives = 59/115 (51%), Gaps = 2/115 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 A ++ PV + M ++ +E L+ +++R+ G +T+ +CE S+ +S +L Sbjct: 12 AAVCEALAAPVAQRMGLYLWDVAFEKEGAGWYLRYYIDRE-GGVTIDECEAFSREVSDLL 70 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 D + I+ Y LEV SPG++R + + F ++ G V ++ ++ +G + Sbjct: 71 DEADPIDQSYTLEVGSPGVERKLTKDWHFQKYIGAQVHVRLIRPVEGERDFVGAL 125 >gi|308182570|ref|YP_003926697.1| Ribosome maturation factor rimP [Helicobacter pylori PeCan4] gi|308064755|gb|ADO06647.1| Ribosome maturation factor rimP [Helicobacter pylori PeCan4] Length = 146 Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E + +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKKIEEKIESVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEVISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDF 109 LDV + I+ Y LEVSS G++R + F Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHF 90 >gi|299771784|ref|YP_003733810.1| hypothetical protein AOLE_17760 [Acinetobacter sp. DR1] gi|298701872|gb|ADI92437.1| hypothetical protein AOLE_17760 [Acinetobacter sp. DR1] Length = 175 Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 23/75 (30%), Positives = 42/75 (56%) Query: 64 MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVL 123 + ++DC ++Q + +LDV + I G Y LEVSSPG DRP + + G +A ++ Sbjct: 68 IGVQDCVRVTQQVGAMLDVHDPISGEYSLEVSSPGWDRPFFQLEQLQGYIGQQIALRLIA 127 Query: 124 SSGDKQKLIGKIMGT 138 + +++K K++ Sbjct: 128 AVENRRKFQAKLIAV 142 >gi|262280757|ref|ZP_06058540.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] gi|262257657|gb|EEY76392.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] Length = 174 Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 23/75 (30%), Positives = 42/75 (56%) Query: 64 MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVL 123 + ++DC ++Q + +LDV + I G Y LEVSSPG DRP + + G +A ++ Sbjct: 67 IGVQDCVRVTQQVGAMLDVHDPISGEYSLEVSSPGWDRPFFQLEQLQGYIGQQIALRLIA 126 Query: 124 SSGDKQKLIGKIMGT 138 + +++K K++ Sbjct: 127 AVENRRKFQAKLIAV 141 >gi|150021291|ref|YP_001306645.1| hypothetical protein Tmel_1413 [Thermosipho melanesiensis BI429] gi|259645126|sp|A6LMV9|RIMP_THEM4 RecName: Full=Ribosome maturation factor rimP gi|149793812|gb|ABR31260.1| protein of unknown function DUF150 [Thermosipho melanesiensis BI429] Length = 147 Score = 51.2 bits (121), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 1/95 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + + Q + EE + + L+I ++ ++ +DCE +S+ + Sbjct: 4 IVSQVKDIAQKICEEFHLELFDVKYYNKSGRWFLEIIIDNPYDYISTKDCENVSRKLEFE 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNG 114 LD NII Y L VSSPG++RP+ DF R+ G Sbjct: 64 LDKINIIPNKYYLTVSSPGLNRPLRNVKDFERFTG 98 >gi|124002856|ref|ZP_01687708.1| 15 kDa protein [Microscilla marina ATCC 23134] gi|123992084|gb|EAY31471.1| 15 kDa protein [Microscilla marina ATCC 23134] Length = 152 Score = 51.2 bits (121), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 69/123 (56%), Gaps = 7/123 (5%) Query: 53 LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRW 112 L + ++ D G +++ C LS+ + ++ EN+IEG Y LEVSSPG+D P+ + +++ Sbjct: 35 LTVLIDGDQG-VSIDRCATLSRWLGKYIEEENLIEGAYTLEVSSPGVDLPLKNQRQYIKN 93 Query: 113 NGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G V + G+K ++ K+ + ++ EK+G K + E + I FD ++ ++ Sbjct: 94 IGRKVKVSLN-EGGNKTGVLEKV---EDKLIVIQPEKKG-KIIPEKE-EIPFDQIMKTKV 147 Query: 173 IVT 175 +++ Sbjct: 148 MIS 150 >gi|134102375|ref|YP_001108036.1| hypothetical protein SACE_5928 [Saccharopolyspora erythraea NRRL 2338] gi|291004240|ref|ZP_06562213.1| hypothetical protein SeryN2_06952 [Saccharopolyspora erythraea NRRL 2338] gi|167016718|sp|A4FM36|RIMP_SACEN RecName: Full=Ribosome maturation factor rimP gi|133914998|emb|CAM05111.1| protein of unknown function DUF150 [Saccharopolyspora erythraea NRRL 2338] Length = 185 Score = 51.2 bits (121), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 60/95 (63%), Gaps = 7/95 (7%) Query: 23 GDISSVIQPVIEE-MSFRSVQISLLE----EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 G++++ ++PV+ E +S + L+ + L+++ V+ ++G + L + E+S+A+S Sbjct: 7 GEVAARLEPVVAEAVSAAGFDLEELDVQQAGRRRLVKVVVDAEEG-VGLDEISEISRAVS 65 Query: 78 PILDV-ENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 +LD E+++ G Y LEV+SPG+DRP+ R + R Sbjct: 66 KVLDAHEHVLAGSYTLEVTSPGVDRPLTRPRHWRR 100 >gi|270290315|ref|ZP_06196540.1| hypothetical protein HMPREF9024_00500 [Pediococcus acidilactici 7_4] gi|270281096|gb|EFA26929.1| hypothetical protein HMPREF9024_00500 [Pediococcus acidilactici 7_4] Length = 158 Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 81/157 (51%), Gaps = 16/157 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I+ + +PVIE F+ V++ ++E + L+ ++++ G + + +C +S +S +LD + Sbjct: 9 ITELARPVIESHDFQLVEVEFVKEGQGWFLRFYIDKV-GGINIEECAMVSDELSELLDQQ 67 Query: 84 NI--IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + I Y LEVSSPG +RP+ K D G + + +S +KQK+ + + E Sbjct: 68 DPDPIPQAYFLEVSSPGAERPLKTKEDLAAAVGEYIHISL-YASINKQKVFEGYLKSFEN 126 Query: 142 GF----FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +L+K + E + ++++ + ARL + Sbjct: 127 DELVLDYLDKTRHKE-------LKVAYNQVAFARLAI 156 >gi|302670326|ref|YP_003830286.1| hypothetical protein bpr_I0962 [Butyrivibrio proteoclasticus B316] gi|302394799|gb|ADL33704.1| hypothetical protein bpr_I0962 [Butyrivibrio proteoclasticus B316] Length = 154 Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 2/92 (2%) Query: 27 SVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDVENI 85 +++ P+ E R + ++E L+ ++++D G + + +C ++S A+S LDV++ Sbjct: 13 ALLTPIAEANGVRVYDVEYVKEAGEWYLRAYIDKD-GGVDINECVDVSHALSDALDVDDF 71 Query: 86 IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 IE Y LEVSSPG+ R + + F G V Sbjct: 72 IEEAYTLEVSSPGLGRQLKKDRHFANSIGQDV 103 >gi|317013844|gb|ADU81280.1| Ribosome maturation factor rimP [Helicobacter pylori Gambia94/24] Length = 146 Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 53/80 (66%), Gaps = 1/80 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I I+ VIE + + +SL++E + +L++ ++ +G ++L C+++S+ ISP+LDV Sbjct: 5 IEEKIEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEVISPLLDVC 64 Query: 84 NIIEGHYRLEVSSPGIDRPM 103 + I+ Y LEVSS G++R + Sbjct: 65 DFIQDAYTLEVSSMGLERTL 84 >gi|332528892|ref|ZP_08404862.1| hypothetical protein HGR_03237 [Hylemonella gracilis ATCC 19624] gi|332041649|gb|EGI78005.1| hypothetical protein HGR_03237 [Hylemonella gracilis ATCC 19624] Length = 202 Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 38/54 (70%), Gaps = 2/54 (3%) Query: 64 MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + + DCE++++ + +L+VE I + RLEVSSPGIDRP+ + DF R+ G V+ Sbjct: 55 VNVEDCEKVTRQLQYVLEVEGI--EYKRLEVSSPGIDRPLRHEQDFERFAGQVI 106 >gi|315641144|ref|ZP_07896223.1| protein of hypothetical function DUF150 [Enterococcus italicus DSM 15952] gi|315483152|gb|EFU73669.1| protein of hypothetical function DUF150 [Enterococcus italicus DSM 15952] Length = 154 Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/109 (26%), Positives = 65/109 (59%), Gaps = 5/109 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 ++ ++ P+++ F V++ ++E K+ L++F+++++G + + +C +S+ +S LD Sbjct: 5 VTDLVVPILDSKHFELVEVEFVKEGKSWFLRVFIDKEEG-IDIEECAWVSEMLSEKLDSI 63 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS-SGDKQ 129 + I Y LE+SSPG +RP+ ++ D+ + G V + + G+KQ Sbjct: 64 DPDPIPQAYFLEISSPGAERPLKKEKDYEKAVGSFVHLSLYQAVDGEKQ 112 >gi|254431118|ref|ZP_05044821.1| hypothetical protein CPCC7001_1009 [Cyanobium sp. PCC 7001] gi|197625571|gb|EDY38130.1| hypothetical protein CPCC7001_1009 [Cyanobium sp. PCC 7001] Length = 158 Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 3/108 (2%) Query: 32 VIEEMSFRSVQISLLEEK-NLLLQIFVERDDG-NMTLRDCEELSQAISPILDVENII-EG 88 V E+ F Q++LL + + LQ+ V+R DG +++L +C LS + + D ++ E Sbjct: 16 VCAELGFELRQVNLLTHRIPMTLQVLVQRGDGRDISLDECAALSAPLGEVFDAAGVLGEE 75 Query: 89 HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 Y LE+SSPG+ + + DF + G VA +G + + G ++ Sbjct: 76 AYVLEISSPGVSDELQDERDFRSFRGFPVAVRFTDRNGAEARCEGLLL 123 >gi|163857447|ref|YP_001631745.1| hypothetical protein Bpet3135 [Bordetella petrii DSM 12804] gi|226703725|sp|A9ITY3|RIMP_BORPD RecName: Full=Ribosome maturation factor rimP gi|163261175|emb|CAP43477.1| conserved hypothetical protein [Bordetella petrii] Length = 163 Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 44/64 (68%), Gaps = 3/64 (4%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 LL++ +++ G + + DCE++S+ +S + +VENI + RLEV SPG+DRP+ +++ R Sbjct: 29 LLRVTIDKA-GGVRIEDCEQVSRQLSRVYEVENI--DYKRLEVGSPGVDRPLRTEAELRR 85 Query: 112 WNGH 115 + G Sbjct: 86 FAGE 89 >gi|108562826|ref|YP_627142.1| hypothetical protein HPAG1_0401 [Helicobacter pylori HPAG1] gi|122386653|sp|Q1CUA4|RIMP_HELPH RecName: Full=Ribosome maturation factor rimP gi|107836599|gb|ABF84468.1| hypothetical protein HPAG1_0401 [Helicobacter pylori HPAG1] Length = 146 Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E + +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKKIEEKIEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEVISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDF 109 LDV + I+ Y LEVSS G++R + F Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHF 90 >gi|326316664|ref|YP_004234336.1| ribosome maturation factor rimP [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373500|gb|ADX45769.1| Ribosome maturation factor rimP [Acidovorax avenae subsp. avenae ATCC 19860] Length = 201 Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 2/64 (3%) Query: 64 MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVL 123 +T+ DCE++++ + L+V+ + + RLEVSSPGIDRP+ + DF R+ G VV + Sbjct: 57 VTVEDCEKVTRQLQFALEVDGV--DYKRLEVSSPGIDRPLRHEQDFQRFAGEVVDITLKA 114 Query: 124 SSGD 127 GD Sbjct: 115 PIGD 118 >gi|238063379|ref|ZP_04608088.1| hypothetical protein MCAG_04345 [Micromonospora sp. ATCC 39149] gi|237885190|gb|EEP74018.1| hypothetical protein MCAG_04345 [Micromonospora sp. ATCC 39149] Length = 232 Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 71/140 (50%), Gaps = 17/140 (12%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +VI+PV+ + +S+ + ++++ V+ DG + L ++S+A+S LD Sbjct: 43 LHAVIEPVVNAAGYDLEDVSVSRAGRRHVVRVIVD-ADGGINLDAVADVSRAVSAALDAA 101 Query: 84 -----NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV-----ACEIVLSSGDKQ---- 129 +I+ G Y+LEVSSPG+DRP+ + R G +V A +GD+Q Sbjct: 102 EEAGGDILAGEYQLEVSSPGVDRPLTLPRHWRRNVGRLVKVTARAVAPGPRAGDRQPTGD 161 Query: 130 -KLIGKIMGTSETGFFLEKE 148 ++ G+++ + LE + Sbjct: 162 RQVTGRVVEADDERVVLETD 181 >gi|317180703|dbj|BAJ58489.1| hypothetical protein HPF32_0907 [Helicobacter pylori F32] Length = 146 Score = 50.8 bits (120), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E + +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKKIEEKIEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEVISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDF 109 LDV + I+ Y LEVSS G++R + F Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHF 90 >gi|306830061|ref|ZP_07463247.1| hypothetical protein HMPREF8571_1603 [Streptococcus mitis ATCC 6249] gi|304427774|gb|EFM30868.1| hypothetical protein HMPREF8571_1603 [Streptococcus mitis ATCC 6249] Length = 175 Score = 50.8 bits (120), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 78/152 (51%), Gaps = 7/152 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 + V++PVI+ F V I + +++L IFV++ +G +TL D +L++ ISP+LD Sbjct: 27 VREVVEPVIQ-APFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEIISPVLDTI 84 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI-GKIMGTSE 140 + Y LE++SPG++RP+ K G + + + DKQK+ G ++ E Sbjct: 85 KPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGL-YQAIDKQKVFEGTLLSFEE 143 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +E + K ++ ++ + L+ +L Sbjct: 144 EELTVEYMDKTRKKTVQIPYSLVSKARLAVKL 175 >gi|270292190|ref|ZP_06198405.1| conserved hypothetical protein [Streptococcus sp. M143] gi|293364177|ref|ZP_06610904.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037] gi|270279718|gb|EFA25560.1| conserved hypothetical protein [Streptococcus sp. M143] gi|291317355|gb|EFE57781.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037] Length = 175 Score = 50.8 bits (120), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 78/152 (51%), Gaps = 7/152 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 + V++PVI+ F V I + +++L IFV++ +G +TL D +L++ ISP+LD Sbjct: 27 VREVVEPVIQ-APFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEIISPVLDTI 84 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI-GKIMGTSE 140 + Y LE++SPG++RP+ K G + + + DKQK+ G ++ E Sbjct: 85 KPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGL-YQAIDKQKVFEGTLVSFEE 143 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +E + K ++ ++ + L+ +L Sbjct: 144 DELTMEYMDKTRKKTVQIPYSLVSKARLAVKL 175 >gi|290581069|ref|YP_003485461.1| hypothetical protein SmuNN2025_1543 [Streptococcus mutans NN2025] gi|254997968|dbj|BAH88569.1| hypothetical protein [Streptococcus mutans NN2025] Length = 163 Score = 50.8 bits (120), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 76/159 (47%), Gaps = 21/159 (13%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK---NLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + V+ PVI + F V I EK N +L I V++ +G +T+ D +L+ ISP+LD Sbjct: 15 VRPVVAPVIPK-PFELVDIEY--EKLGGNYVLSILVDKPEG-ITVEDTADLTDIISPLLD 70 Query: 82 V--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL----IGKI 135 + Y LE+SSPG++RP+ + GH + + + DK K+ + Sbjct: 71 TIKPDPFPEQYMLEISSPGLERPLKTAQSLMNAVGHYINVSL-YQAIDKVKVFEGDLTAF 129 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G + T +L+K ++ + I + + ARL V Sbjct: 130 DGETLTMTYLDKTQQK-------TVTIPYKMVAKARLAV 161 >gi|313680245|ref|YP_004057984.1| hypothetical protein Ocepr_1355 [Oceanithermus profundus DSM 14977] gi|313152960|gb|ADR36811.1| protein of unknown function DUF150 [Oceanithermus profundus DSM 14977] Length = 147 Score = 50.8 bits (120), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 2/93 (2%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVER-DDGNMTLRDCEELSQAISPILD 81 D+ +++ V+ + + +++ L K +L + +ER D+ +T+ D + ++ I LD Sbjct: 2 DLWELVENVVRPLGYEPLEVRLHGAGKTQVLTVRLERLDEAPITVADLQRANRIIGLELD 61 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNG 114 + I G YRLEV SPG DRP++ + F R+ G Sbjct: 62 RADPIRGSYRLEVESPGPDRPLLTRRHFERFAG 94 >gi|307702468|ref|ZP_07639423.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037] gi|307623962|gb|EFO02944.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037] Length = 159 Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 78/152 (51%), Gaps = 7/152 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 + V++PVI+ F V I + +++L IFV++ +G +TL D +L++ ISP+LD Sbjct: 11 VREVVEPVIQ-APFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEIISPVLDTI 68 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI-GKIMGTSE 140 + Y LE++SPG++RP+ K G + + + DKQK+ G ++ E Sbjct: 69 KPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGL-YQAIDKQKVFEGTLVSFEE 127 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +E + K ++ ++ + L+ +L Sbjct: 128 DELTMEYMDKTRKKTVQIPYSLVSKARLAVKL 159 >gi|313885302|ref|ZP_07819053.1| conserved hypothetical protein [Eremococcus coleocola ACS-139-V-Col8] gi|312619408|gb|EFR30846.1| conserved hypothetical protein [Eremococcus coleocola ACS-139-V-Col8] Length = 157 Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 73/143 (51%), Gaps = 11/143 (7%) Query: 29 IQPVIEEM----SFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 ++P+IEE R V + L+E N L+++ ++D G + L DC +S+ +S LD+ Sbjct: 8 VRPIIEETVAANDCRLVDLEYLKEGPNWYLRVYADKD-GGIDLDDCAFISEKLSEALDLI 66 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + Y LEVSSPG +RP+ +D G V + + ++ G ++ +T Sbjct: 67 KPDPFPKSYYLEVSSPGAERPLKTAADIEAAVGEYVHFDYYVPQYGEKFHEGNLLAVEDT 126 Query: 142 GFFLE---KEKRGEKDMNELQIA 161 + +E K +R E ++++ +A Sbjct: 127 LYRIEVKDKTRRKELEIDKKAVA 149 >gi|119485068|ref|ZP_01619453.1| hypothetical protein L8106_06459 [Lyngbya sp. PCC 8106] gi|119457296|gb|EAW38421.1| hypothetical protein L8106_06459 [Lyngbya sp. PCC 8106] Length = 172 Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 33/131 (25%), Positives = 61/131 (46%), Gaps = 1/131 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSV-QISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L I + PV E + V + +L++ + + + L DCE++S+A+ Sbjct: 24 LVPKIIDLATPVAEALGLEVVGAVFYTNHSPPVLRVDIRNPNQDTGLDDCEQMSRALEEQ 83 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + I Y LE+SSPGI + + DF+ + G + + ++ GK++ Sbjct: 84 LDTIDFIPDAYVLEISSPGISQILTSDRDFISFKGFPILIRTSEAYKGYKEWSGKLIRRD 143 Query: 140 ETGFFLEKEKR 150 ET +L ++ R Sbjct: 144 ETAVYLNQKGR 154 >gi|120612039|ref|YP_971717.1| hypothetical protein Aave_3385 [Acidovorax citrulli AAC00-1] gi|226703802|sp|A1TSK5|RIMP_ACIAC RecName: Full=Ribosome maturation factor rimP gi|120590503|gb|ABM33943.1| protein of unknown function DUF150 [Acidovorax citrulli AAC00-1] Length = 202 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 41/64 (64%), Gaps = 2/64 (3%) Query: 64 MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVL 123 +T+ DCE++++ + L+V+ + + RLEVSSPGIDRP+ + DF R+ G V+ + Sbjct: 58 VTVEDCEKVTRQLQFALEVDGV--DYKRLEVSSPGIDRPLRHEQDFQRFAGEVIDITLKA 115 Query: 124 SSGD 127 GD Sbjct: 116 PIGD 119 >gi|261839249|gb|ACX99014.1| hypothetical protein HPKB_0406 [Helicobacter pylori 52] Length = 146 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E + +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKKIEEKIEGVIESLGYLLYDVSLIKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDF 109 LDV + I+ Y LEVSS G++R + F Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHF 90 >gi|227497550|ref|ZP_03927778.1| YhbC family protein [Actinomyces urogenitalis DSM 15434] gi|226833004|gb|EEH65387.1| YhbC family protein [Actinomyces urogenitalis DSM 15434] Length = 154 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 13/113 (11%) Query: 62 GNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 G++ L E++Q +S LD + ++G Y LEV+SPG +R + F R GH Sbjct: 53 GDLDLDAVAEVTQTVSDALDEADPVKGQYTLEVTSPGAERELTTPRTFRRATGHQAR--- 109 Query: 122 VLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++++G Q L G + E + E D +E IA + LL AR++V Sbjct: 110 LVTAG--QTLTGTVRSADEETVTV------EVDGSEQTIA--YTDLLEARMVV 152 >gi|86609688|ref|YP_478450.1| hypothetical protein CYB_2246 [Synechococcus sp. JA-2-3B'a(2-13)] gi|123501415|sp|Q2JJI0|RIMP_SYNJB RecName: Full=Ribosome maturation factor rimP gi|86558230|gb|ABD03187.1| conserved hypothetical protein [Synechococcus sp. JA-2-3B'a(2-13)] Length = 156 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 7/135 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN---LLLQIFVERDDGNMTLRDCEELSQAIS 77 L + S+ +P+ ++ ++ VQ+ ++ L + I D + DCE +SQA+ Sbjct: 5 LIPQLESLARPLAAQLGYQLVQMVFHTNQHPPVLRVDIRPLDPDRETSHADCEAMSQALE 64 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI--GKI 135 LD ++I G Y LEVSSPGI + DF+ + G A E+ L K K + G + Sbjct: 65 VELDRVDLIPGQYVLEVSSPGISNLLTSDRDFVVFKG--FAVEVTLDPPYKGKAVWSGHL 122 Query: 136 MGTSETGFFLEKEKR 150 +G E L + R Sbjct: 123 LGRDEERVALSLKGR 137 >gi|332673248|gb|AEE70065.1| conserved hypothetical protein [Helicobacter pylori 83] Length = 146 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E + +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKKIEEKIEGVIESLGYLLYDVSLIKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDF 109 LDV + I+ Y LEVSS G++R + F Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHF 90 >gi|259585814|sp|B5Z6E8|RIMP_HELPG RecName: Full=Ribosome maturation factor rimP Length = 146 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E + +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKKIEEKIEGVIESLGYLLYDVSLVKENEQHILRVSLKNPNGAVSLDICQQVSEIISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDF 109 LDV + I+ Y LEVSS G++R + F Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHF 90 >gi|188527211|ref|YP_001909898.1| hypothetical protein HPSH_02090 [Helicobacter pylori Shi470] gi|226701161|sp|B2USN6|RIMP_HELPS RecName: Full=Ribosome maturation factor rimP gi|188143451|gb|ACD47868.1| hypothetical protein HPSH_02090 [Helicobacter pylori Shi470] gi|261837834|gb|ACX97600.1| hypothetical protein KHP_0389 [Helicobacter pylori 51] gi|297379622|gb|ADI34509.1| UPF0090 protein [Helicobacter pylori v225d] gi|308061753|gb|ADO03641.1| Ribosome maturation factor rimP [Helicobacter pylori Cuz20] gi|308063263|gb|ADO05150.1| Ribosome maturation factor rimP [Helicobacter pylori Sat464] Length = 146 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E + +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKKIEEKIEGVIESLGYLLYDVSLIKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDF 109 LDV + I+ Y LEVSS G++R + F Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHF 90 >gi|171058382|ref|YP_001790731.1| hypothetical protein Lcho_1699 [Leptothrix cholodnii SP-6] gi|226736416|sp|B1XY65|RIMP_LEPCP RecName: Full=Ribosome maturation factor rimP gi|170775827|gb|ACB33966.1| protein of unknown function DUF150 [Leptothrix cholodnii SP-6] Length = 183 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 72/136 (52%), Gaps = 22/136 (16%) Query: 52 LLQIFVERDDGNMTL---------RDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRP 102 LL ++++R G++ L DCE +++ + + +VEN+ + RLEVSSPG+DRP Sbjct: 28 LLCVYIDRVPGSVYLTGPGEFVLVEDCELVTRQLRYLFEVENV--DYSRLEVSSPGLDRP 85 Query: 103 MVRKSDFLRWNGHVVACEIVLSS---GDK--QKLIGKIMGTSETGFFLEKEKRGEKDMNE 157 + + DFLR+ G V ++ L + G K + L+ + T E GF L + E + Sbjct: 86 LRKVGDFLRFLGSDV--DVTLKAPFQGRKNYRGLLRQAGDTPEQGFELVFQDGKEDKV-- 141 Query: 158 LQIAISFDSLLSARLI 173 + + D + ARL+ Sbjct: 142 --LGFALDEVREARLV 155 >gi|319947586|ref|ZP_08021816.1| hypothetical protein containing DUF150 [Streptococcus australis ATCC 700641] gi|319746274|gb|EFV98537.1| hypothetical protein containing DUF150 [Streptococcus australis ATCC 700641] Length = 195 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 78/152 (51%), Gaps = 7/152 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 ++ ++QP I+ F V + + + +L IFV++ G +TL D +L++ ISP+LD Sbjct: 47 VTEILQPAIQ-APFELVDVEYGKMGGDYVLSIFVDKP-GGITLNDTADLTEVISPLLDQI 104 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI-GKIMGTSE 140 + Y LEV+SPG++RP+ K + G + + + DKQK+I G ++ + Sbjct: 105 QPDPFPEQYFLEVTSPGLERPLKTKDAVEKSLGQYIHVSL-YKAVDKQKVIEGTLVKFED 163 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +E + K E+ ++ + L+ +L Sbjct: 164 DQLTMEYMDKTRKKTIEIPYSLVSKARLAVKL 195 >gi|256830178|ref|YP_003158906.1| hypothetical protein Dbac_2411 [Desulfomicrobium baculatum DSM 4028] gi|256579354|gb|ACU90490.1| protein of unknown function DUF150 [Desulfomicrobium baculatum DSM 4028] Length = 162 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 4/121 (3%) Query: 28 VIQPVIEEMSFRSVQISLLEE---KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ P+ E I LL ++ +++++++ G + + +C E+S+ +S LDVE+ Sbjct: 13 MVTPLCEARDLEVWGIELLFAAGGRHKIVRVYLDSQQG-VGIDECSEVSRHLSLALDVED 71 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 II G + LEVSSPG++RP L + G V + ++ G+++ F Sbjct: 72 IIPGAFNLEVSSPGLERPFFSTEQMLPYVGQTVRIRLDNPLEGRKNFKGRLLSIESPMFT 131 Query: 145 L 145 L Sbjct: 132 L 132 >gi|311748746|ref|ZP_07722531.1| hypothetical protein ALPR1_20868 [Algoriphagus sp. PR1] gi|126577280|gb|EAZ81528.1| hypothetical protein ALPR1_20868 [Algoriphagus sp. PR1] Length = 157 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 54/91 (59%), Gaps = 5/91 (5%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 +L I ++ D G + ++ C +S+A++ L+ + ++ Y LEVSSPG+D P+ + F + Sbjct: 36 VLSILIDADQG-LNVQTCANVSRAVAEELEAKELMSEAYILEVSSPGVDYPLSSRRQFQK 94 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 G +++L+SG Q+L GK++ TG Sbjct: 95 NIGR--ELKVLLTSG--QELKGKLLEVDTTG 121 >gi|241764250|ref|ZP_04762281.1| protein of unknown function DUF150 [Acidovorax delafieldii 2AN] gi|241366373|gb|EER60895.1| protein of unknown function DUF150 [Acidovorax delafieldii 2AN] Length = 197 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 39/54 (72%), Gaps = 2/54 (3%) Query: 64 MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 +T+ DCE++++ + L+V+ + + RLEVSSPGIDRP+ + DF+R+ G V+ Sbjct: 53 ITVEDCEKVTRQLQFALEVDGV--EYKRLEVSSPGIDRPLRHEQDFVRFEGSVI 104 >gi|90961544|ref|YP_535460.1| hypothetical protein LSL_0568 [Lactobacillus salivarius UCC118] gi|227890632|ref|ZP_04008437.1| protein of hypothetical function DUF150 [Lactobacillus salivarius ATCC 11741] gi|301300280|ref|ZP_07206489.1| conserved hypothetical protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|122449172|sp|Q1WUF8|RIMP_LACS1 RecName: Full=Ribosome maturation factor rimP gi|90820738|gb|ABD99377.1| Conserved hypothetical protein [Lactobacillus salivarius UCC118] gi|227867570|gb|EEJ74991.1| protein of hypothetical function DUF150 [Lactobacillus salivarius ATCC 11741] gi|300852121|gb|EFK79796.1| conserved hypothetical protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 157 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 56/90 (62%), Gaps = 4/90 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 +++++ P+++E F V + ++E K+ L++++++ +G + + +C +S +S LD Sbjct: 8 VTNLVTPILDENHFELVDVEFVKEGKSWYLRVYIDKPNG-INIEECALVSDKLSEKLDSC 66 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 + I Y LEVSSPG +RP+ ++ D+ R Sbjct: 67 DPDPIPQAYYLEVSSPGAERPLKKEKDYER 96 >gi|307067173|ref|YP_003876139.1| hypothetical protein SPAP_0544 [Streptococcus pneumoniae AP200] gi|306408710|gb|ADM84137.1| Uncharacterized protein conserved in bacteria [Streptococcus pneumoniae AP200] Length = 134 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 9/128 (7%) Query: 50 NLLLQIFVERDDGNMTLRDCEELSQAISPILDV--ENIIEGHYRLEVSSPGIDRPMVRKS 107 +++L IFV++ +G +TL D +L++ ISP+LD + Y LE++SPG++RP+ K Sbjct: 11 DMILSIFVDKPEG-ITLNDTADLTEMISPVLDTIKPDPFPEQYFLEITSPGLERPLKTKD 69 Query: 108 DFLRWNGHVVACEIVLSSGDKQKLI-GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDS 166 G + + + DKQK+ G ++ E +E + K +QI S S Sbjct: 70 AVAGAVGKYIHVGL-YQAIDKQKVFEGTLLAFEEDELTMEYMDKTRK--KTVQIPYSLVS 126 Query: 167 LLSARLIV 174 ARL V Sbjct: 127 --KARLAV 132 >gi|317179205|dbj|BAJ56993.1| hypothetical protein HPF30_0896 [Helicobacter pylori F30] Length = 146 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E + +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKKIEEKIEGVIESLGYLLYDVSLIKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDF 109 LDV + I+ Y LEVSS G++R + F Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHF 90 >gi|254779091|ref|YP_003057196.1| hypothetical protein HELPY_0404 [Helicobacter pylori B38] gi|254001002|emb|CAX28946.1| Conserved hypothetical protein [Helicobacter pylori B38] Length = 146 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 54/86 (62%), Gaps = 1/86 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I I+ VIE + + +SL++E + +L++ ++ +G ++L C+++S+ ISP+LDV Sbjct: 5 IEEKIEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEVISPLLDVC 64 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDF 109 + I+ Y LEVSS G++R + F Sbjct: 65 DFIQDAYILEVSSMGLERTLKTPKHF 90 >gi|262370082|ref|ZP_06063409.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] gi|262315121|gb|EEY96161.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] Length = 174 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/73 (30%), Positives = 41/73 (56%) Query: 66 LRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS 125 ++DC ++Q + ++DV + I G Y LEVSSPG DRP + + G +A ++ + Sbjct: 69 VQDCVRVTQQVGAMMDVHDPISGEYALEVSSPGWDRPFFQLEQLPAYIGQQIAFRLISAV 128 Query: 126 GDKQKLIGKIMGT 138 +++K K++ Sbjct: 129 DNRRKFQAKLVAV 141 >gi|312130304|ref|YP_003997644.1| hypothetical protein Lbys_1583 [Leadbetterella byssophila DSM 17132] gi|311906850|gb|ADQ17291.1| protein of unknown function DUF150 [Leadbetterella byssophila DSM 17132] Length = 151 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/158 (25%), Positives = 84/158 (53%), Gaps = 10/158 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 M L + +++ +I + + V+I++ + K + IF++ D G +T+ C E+S+ + Sbjct: 1 MSLKDTVIKLVEDLIRDTDYYVVEIAVSDSKIRRKVSIFLDSDAG-ITIDQCTEVSRKLG 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 L +E +I+ + LEVSSPG D P+ + +++ G + +I+ G + K GK++ Sbjct: 60 --LQLEEVIDEAFTLEVSSPGADSPLKFERQYVKNIGR--SLKILKVDGSEIK--GKLVS 113 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +E E +K + +A+S D + A++I++ Sbjct: 114 VENGSITIETE--AKKKVKSETVALSLDEIKEAKVIIS 149 >gi|317009046|gb|ADU79626.1| Ribosome maturation factor rimP [Helicobacter pylori India7] Length = 146 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E + +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKKIEEKIEGVIESLGYLLYDVSLVKENEQHILRVSLKNPNGAVSLDICQQVSEIISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDF 109 LDV + I+ Y LEVSS G++R + F Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHF 90 >gi|220907501|ref|YP_002482812.1| hypothetical protein Cyan7425_2088 [Cyanothece sp. PCC 7425] gi|254801539|sp|B8HUA6|RIMP_CYAP4 RecName: Full=Ribosome maturation factor rimP gi|219864112|gb|ACL44451.1| protein of unknown function DUF150 [Cyanothece sp. PCC 7425] Length = 154 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/100 (26%), Positives = 50/100 (50%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 +L++ + + +L DCE +S + LD +++ G Y LEVSSPGI R + +F+ Sbjct: 37 VLRVDIRNLSADTSLEDCERMSHRLETALDAADLVAGTYVLEVSSPGISRLLSSDREFVS 96 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRG 151 + G V +++ +G ++ E +L ++ R Sbjct: 97 FRGFSVIVRTREPIAGQREWVGNLVQRDEEFVYLNQKGRA 136 >gi|15611447|ref|NP_223098.1| hypothetical protein jhp0379 [Helicobacter pylori J99] gi|6648012|sp|Q9ZM44|RIMP_HELPJ RecName: Full=Ribosome maturation factor rimP gi|4154909|gb|AAD05958.1| putative [Helicobacter pylori J99] Length = 146 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E + +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKKIEEKIEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDF 109 LDV + I+ Y LEVSS G++R + F Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHF 90 >gi|71064648|ref|YP_263375.1| hypothetical protein Psyc_0067 [Psychrobacter arcticus 273-4] gi|91207994|sp|Q4FVL7|RIMP_PSYA2 RecName: Full=Ribosome maturation factor rimP gi|71037633|gb|AAZ17941.1| conserved hypothetical protein [Psychrobacter arcticus 273-4] Length = 166 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 7/122 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVER------DDGNMTLRDCEELSQAI 76 +++++I P + I + N LL+I++E + +T+ +C ++ + Sbjct: 9 ELTNIIAPAVAACDVALWGIEFAPQGNRSLLRIYIEALPEEQAQNKQVTIENCAAVNHQV 68 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 S IL+V + I G + LEVSSPG DR + G V+ ++ + G+ K K Sbjct: 69 SGILEVHDPIAGEFILEVSSPGFDRAFFSDEQMHAYVGQTVSLRLIQAIGEGDKKRRKAT 128 Query: 137 GT 138 GT Sbjct: 129 GT 130 >gi|93004903|ref|YP_579340.1| hypothetical protein Pcryo_0072 [Psychrobacter cryohalolentis K5] gi|122416155|sp|Q1QEP7|RIMP_PSYCK RecName: Full=Ribosome maturation factor rimP gi|92392581|gb|ABE73856.1| protein of unknown function DUF150 [Psychrobacter cryohalolentis K5] Length = 166 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 7/122 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVER------DDGNMTLRDCEELSQAI 76 +++++I P + I + N LL+I++E + +T+ +C ++ + Sbjct: 9 ELTNIIAPAVAACDVALWGIEFAPQGNRSLLRIYIEALPEEQAQNKQVTIENCAAVNHQV 68 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 S IL+V + I G + LEVSSPG DR + G V+ ++ + G+ K K Sbjct: 69 SGILEVHDPISGEFILEVSSPGFDRAFFSDEQMHAYVGQTVSLRLIQAIGEGDKKRRKAT 128 Query: 137 GT 138 GT Sbjct: 129 GT 130 >gi|327403852|ref|YP_004344690.1| Ribosome maturation factor rimP [Fluviicola taffensis DSM 16823] gi|327319360|gb|AEA43852.1| Ribosome maturation factor rimP [Fluviicola taffensis DSM 16823] Length = 158 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 70/131 (53%), Gaps = 25/131 (19%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 ++++ +++ +GN+++ DC +S+ I LD E+ + L VSS G+D+P+ + +++ Sbjct: 34 VIRLELDKTEGNVSIEDCMSVSRNIEHNLDRED---ADFELSVSSAGLDKPLRVHAQYVK 90 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKR----GEK-------------- 153 G ++ L S K+K+ G ++ ETG L+ E++ G+K Sbjct: 91 NIGR--GLDVKLKS--KEKVTGTLISVDETGVVLQHEEKQAIEGKKKKELVVIENKIAFS 146 Query: 154 DMNELQIAISF 164 D+NE +I ISF Sbjct: 147 DINEAKIVISF 157 >gi|308184203|ref|YP_003928336.1| Ribosome maturation factor rimP [Helicobacter pylori SJM180] gi|308060123|gb|ADO02019.1| Ribosome maturation factor rimP [Helicobacter pylori SJM180] Length = 146 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 54/84 (64%), Gaps = 1/84 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E + +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKKIEEKIEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPM 103 LDV + I+ Y LEVSS G++R + Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTL 84 >gi|323697470|ref|ZP_08109382.1| protein of unknown function DUF150 [Desulfovibrio sp. ND132] gi|323457402|gb|EGB13267.1| protein of unknown function DUF150 [Desulfovibrio desulfuricans ND132] Length = 152 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 62/115 (53%), Gaps = 2/115 (1%) Query: 25 ISSVIQPVIEEMSFRSVQI-SLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 +S +I+P +E + + + S K +++I+++ G + + C E+S+ + +L+VE Sbjct: 9 LSDMIRPEVENLGYVFWGLASPSSGKKRVVRIYIDAP-GGVNIDQCAEVSRQVGLMLEVE 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 ++I G + LEVSSPG++RP + + G V + ++K G++ G Sbjct: 68 DVIPGAFVLEVSSPGLERPFFAPAQLADYVGRKVDVLLFEPLDGRRKFKGELTGV 122 >gi|306824617|ref|ZP_07457962.1| conserved hypothetical protein [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|315611733|ref|ZP_07886655.1| conserved hypothetical protein [Streptococcus sanguinis ATCC 49296] gi|304433185|gb|EFM36156.1| conserved hypothetical protein [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|315316148|gb|EFU64178.1| conserved hypothetical protein [Streptococcus sanguinis ATCC 49296] Length = 175 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 61/110 (55%), Gaps = 6/110 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 + V++PVI+ F V I + +++L IFV++ +G +TL D +L++ ISP+LD Sbjct: 27 VREVVEPVIQ-APFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEIISPVLDTI 84 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 + Y LE++SPG++RP+ K G + + + DKQK+ Sbjct: 85 KPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGL-YQAIDKQKV 133 >gi|331265776|ref|YP_004325406.1| hypothetical protein SOR_0379 [Streptococcus oralis Uo5] gi|326682448|emb|CBZ00065.1| conserved hypothetical protein [Streptococcus oralis Uo5] Length = 175 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 61/110 (55%), Gaps = 6/110 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 + V++PVI+ F V I + +++L IFV++ +G +TL D +L++ ISP+LD Sbjct: 27 VREVVEPVIQ-APFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEIISPVLDTI 84 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 + Y LE++SPG++RP+ K G + + + DKQK+ Sbjct: 85 KPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGL-YQAIDKQKV 133 >gi|213026073|ref|ZP_03340520.1| hypothetical protein Salmonelentericaenterica_28018 [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 59 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 37/59 (62%) Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 +S +S +LDVE+ I Y LEVSSPG+DRPM + R+ G VA + ++ +++K Sbjct: 1 MSHQVSAVLDVEDPISVAYNLEVSSPGLDRPMFTADHYARFQGEEVALVLRMAVQNRRK 59 >gi|207093098|ref|ZP_03240885.1| hypothetical protein HpylHP_09959 [Helicobacter pylori HPKX_438_AG0C1] Length = 146 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 54/86 (62%), Gaps = 1/86 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I I+ VIE + + +SL++E + +L++ ++ +G ++L C+++S+ ISP+LDV Sbjct: 5 IEEKIEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPLLDVC 64 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDF 109 + I+ Y LEVSS G++R + F Sbjct: 65 DFIQDAYILEVSSMGLERTLKTPKHF 90 >gi|322391043|ref|ZP_08064547.1| protein of hypothetical function DUF150 [Streptococcus parasanguinis ATCC 903] gi|321142273|gb|EFX37747.1| protein of hypothetical function DUF150 [Streptococcus parasanguinis ATCC 903] Length = 159 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 78/154 (50%), Gaps = 11/154 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILD-- 81 ++ VIQP I+E F V + + + +L IFV++ +G +TL D +L++ ISP+LD Sbjct: 11 VTEVIQPAIQE-PFELVDVEYGKMGGDYVLSIFVDKPEG-ITLNDTADLTEIISPLLDQI 68 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI-GKIMGTSE 140 + Y LEV+SPG++RP+ K G V + + +KQK+ G ++ E Sbjct: 69 KPDPFPEQYFLEVTSPGLERPLKTKQALEGALGKYVNISL-YKAVEKQKVFEGTLVRFEE 127 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + K E I ++ + ARL V Sbjct: 128 DVLTIEYMDKTRKKTVE----IPYNLVSKARLAV 157 >gi|116495059|ref|YP_806793.1| hypothetical protein LSEI_1577 [Lactobacillus casei ATCC 334] gi|191638562|ref|YP_001987728.1| hypothetical protein LCABL_17900 [Lactobacillus casei BL23] gi|239631346|ref|ZP_04674377.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066622|ref|YP_003788645.1| hypothetical protein LCAZH_1564 [Lactobacillus casei str. Zhang] gi|122263524|sp|Q038M1|RIMP_LACC3 RecName: Full=Ribosome maturation factor rimP gi|259585801|sp|B3WER9|RIMP_LACCB RecName: Full=Ribosome maturation factor rimP gi|116105209|gb|ABJ70351.1| hypothetical protein LSEI_1577 [Lactobacillus casei ATCC 334] gi|190712864|emb|CAQ66870.1| Putative uncharacterized protein [Lactobacillus casei BL23] gi|239525811|gb|EEQ64812.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439029|gb|ADK18795.1| conserved hypothetical protein [Lactobacillus casei str. Zhang] gi|327382600|gb|AEA54076.1| Ribosome maturation factor rimP [Lactobacillus casei LC2W] gi|327385798|gb|AEA57272.1| Ribosome maturation factor rimP [Lactobacillus casei BD-II] Length = 159 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 55/88 (62%), Gaps = 4/88 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 ++++++P++++ F + ++E L++++++ G +TL +C +S+A+S LD Sbjct: 10 VTALVKPILDDHHFYLTDVEFVKEGGGWYLRVYIDKT-GGITLDECVMVSEALSEKLDAM 68 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDF 109 + I Y LEVSSPG +RP+ ++D+ Sbjct: 69 DPDPIPQQYFLEVSSPGAERPLKHETDY 96 >gi|300866112|ref|ZP_07110840.1| Ribosome maturation factor rimP [Oscillatoria sp. PCC 6506] gi|300335908|emb|CBN55998.1| Ribosome maturation factor rimP [Oscillatoria sp. PCC 6506] Length = 153 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/99 (24%), Positives = 53/99 (53%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 +L++ + + L DCE +S+A+ LD+ +I+ Y LE+SSPG+ R + +F+ Sbjct: 37 ILRVDIRNPQQDTGLEDCERMSKALEEKLDMADILPDAYVLEISSPGLSRSLASDREFIS 96 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKR 150 + G V + + ++ +G+++ E ++ ++ R Sbjct: 97 FKGFPVIVKTSEAYNGLKEWVGQLIRRDEKAVYINQKGR 135 >gi|210134596|ref|YP_002301035.1| hypothetical protein HPP12_0398 [Helicobacter pylori P12] gi|226706095|sp|B6JKX7|RIMP_HELP2 RecName: Full=Ribosome maturation factor rimP gi|210132564|gb|ACJ07555.1| hypothetical protein HPP12_0398 [Helicobacter pylori P12] Length = 146 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 55/86 (63%), Gaps = 1/86 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I I+ VIE + + +SL++E ++ +L++ ++ +G ++L C+++S+ ISP+LDV Sbjct: 5 IEEKIEGVIESLGYLLYDVSLVKENEHNILRVSLKNPNGAVSLDICQQVSEIISPLLDVC 64 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDF 109 + I+ Y LEVSS G++R + F Sbjct: 65 DFIQDAYILEVSSMGLERVLKTPKHF 90 >gi|170017454|ref|YP_001728373.1| YlxS [Leuconostoc citreum KM20] gi|259585783|sp|B1MZH7|RIMP_LEUCK RecName: Full=Ribosome maturation factor rimP gi|169804311|gb|ACA82929.1| YlxS [Leuconostoc citreum KM20] Length = 158 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/158 (25%), Positives = 76/158 (48%), Gaps = 14/158 (8%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVE-RDDGNMTLRDCEELSQAISP 78 +A +IS++I+P+I +S +E +L+I ++ R+ +T+ D +QA++ Sbjct: 5 VAQEISTLIEPLINAQQLLLWDVSYTKEGGQKVLRILIDKRNHEFITMDDITTFTQAVNE 64 Query: 79 ILDV--ENIIEGHYRLEVSSPGIDRPMVRKS--DFLRWNGHVVACEIVLSSGDKQKLIGK 134 +LD + I Y L++SSPG DRP++R ++ + +G + ++ ++K GK Sbjct: 65 LLDTIEPDPIPEAYMLDISSPGADRPLIRPWHYEWAKASGENILVAFFVAKNGQKKWQGK 124 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 I + G L I +FD + A L Sbjct: 125 IETIDDKGITLTTSSE--------TIVCTFDEIAKAVL 154 >gi|315586392|gb|ADU40773.1| conserved hypothetical protein [Helicobacter pylori 35A] gi|317181743|dbj|BAJ59527.1| hypothetical protein HPF57_0453 [Helicobacter pylori F57] Length = 146 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL+ E + +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKKIEEKIEGVIESLGYLLYDVSLIRENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDF 109 LDV + I+ Y LEVSS G++R + F Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHF 90 >gi|24378910|ref|NP_720865.1| hypothetical protein SMU.417 [Streptococcus mutans UA159] gi|34222873|sp|Q8DVQ3|RIMP_STRMU RecName: Full=Ribosome maturation factor rimP gi|24376793|gb|AAN58171.1|AE014888_9 conserved hypothetical protein [Streptococcus mutans UA159] Length = 163 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 9/98 (9%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK---NLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + V+ PVI + F V I EK N +L I V++ +G +T+ D +L+ ISP+LD Sbjct: 15 VRPVVAPVIPK-PFELVDIEY--EKLGGNYVLSILVDKPEG-ITVEDTADLTDIISPLLD 70 Query: 82 V--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + Y LE+SSPG++RP+ + GH + Sbjct: 71 TIKPDPFPEQYMLEISSPGLERPLKTAQSLMNAVGHYI 108 >gi|227495146|ref|ZP_03925462.1| protein of hypothetical function DUF150 [Actinomyces coleocanis DSM 15436] gi|226831598|gb|EEH63981.1| protein of hypothetical function DUF150 [Actinomyces coleocanis DSM 15436] Length = 168 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/152 (25%), Positives = 76/152 (50%), Gaps = 10/152 (6%) Query: 29 IQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN--MTLRDCEELSQAISPILDVENII 86 ++PV++ + + E +++I V+ ++G ++ D +E+S IS LD + I Sbjct: 14 VEPVVKAQGLFLEDVKVSERSETVVRIIVDLEEGTYLVSSDDLQEVSWKISEALDAADPI 73 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE 146 E Y LE+S+PG +R + + R +V ++ DK +L G I E+ LE Sbjct: 74 EQAYTLEISTPGAERKLHTPRHYRRSLNRLVEIKL----ADKSELRGFIREVGESELTLE 129 Query: 147 KEKRGEKDMNELQ----IAISFDSLLSARLIV 174 +E + K + + + +SF+++ AR+ V Sbjct: 130 EEAKAPKPGMKPKPGKLVTVSFENISKARVRV 161 >gi|241889857|ref|ZP_04777155.1| conserved hypothetical protein [Gemella haemolysans ATCC 10379] gi|241863479|gb|EER67863.1| conserved hypothetical protein [Gemella haemolysans ATCC 10379] Length = 154 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 2/86 (2%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M + + ++ E F + ++E L+I+ ++D G +TL DC LS+ ++ Sbjct: 1 MSIVEKVKAIATKQAENTEFSLYDVEYVKEGTEYFLRIYFDKD-GGLTLDDCVLLSEKLA 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPM 103 LD E+ I Y LEVSSPGI+R + Sbjct: 60 EELDKEDFISDKYYLEVSSPGIERDL 85 >gi|328955635|ref|YP_004372968.1| protein of unknown function DUF150 [Coriobacterium glomerans PW2] gi|328455959|gb|AEB07153.1| protein of unknown function DUF150 [Coriobacterium glomerans PW2] Length = 167 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 14/154 (9%) Query: 35 EMSFRSVQISLLE----EKNLLLQIFVERDDGN-MTLRDCEELSQAISPILDVENIIEGH 89 E S R + I +E K +++ +E+ DG+ ++L D + +S +++ + + G Sbjct: 17 EASARDIDIVDVELTGATKAPCVRVRLEKADGSALSLDDVCAQNCWVSAVVEDIDPVAGR 76 Query: 90 YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD--KQKLIGKIMGTSETGFFLEK 147 Y LEVSSPG+ RP+ R DF R+ G + + G + +L G I +E + Sbjct: 77 YTLEVSSPGMARPLRRPRDFARFVGQTAQIGFIQTQGPDGRSRLTGLIQSANEDCVTI-A 135 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIVTDELLRA 181 K GE +A+ F+++ A L + + RA Sbjct: 136 PKDGEP------LAVPFEAIKKATLKPSYDFGRA 163 >gi|158334114|ref|YP_001515286.1| hypothetical protein AM1_0930 [Acaryochloris marina MBIC11017] gi|259585654|sp|B0BZP6|RIMP_ACAM1 RecName: Full=Ribosome maturation factor rimP gi|158304355|gb|ABW25972.1| conserved hypothetical protein [Acaryochloris marina MBIC11017] Length = 150 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 2/100 (2%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 +L++ + D + L DCE++S+A+ +LD +++ Y LE+SSPG+ + DF+ Sbjct: 33 VLRVDIRNCDADTGLEDCEKMSRALEAVLDEDDVFPEAYVLEISSPGLSTLLTCDRDFVS 92 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRG 151 + G V + + IG + G E F++ ++G Sbjct: 93 FRGFPVLVQTHQPYRGHHQWIGNLTGRDEK--FVQLNQKG 130 >gi|260221429|emb|CBA29983.1| UPF0090 protein Daci_2988 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 199 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 37/54 (68%), Gaps = 2/54 (3%) Query: 64 MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + + DCE++++ + L+V+ + + RLEVSSPGIDRP+ DF R+ GHV+ Sbjct: 51 VNVEDCEKVTRQLQFALEVDGV--EYKRLEVSSPGIDRPLRHTQDFERFAGHVI 102 >gi|210634028|ref|ZP_03297946.1| hypothetical protein COLSTE_01864 [Collinsella stercoris DSM 13279] gi|210158972|gb|EEA89943.1| hypothetical protein COLSTE_01864 [Collinsella stercoris DSM 13279] Length = 164 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 8/97 (8%) Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S ++ + I G Y LEVSSPG+ RP+ R SDF R+ G V G ++ G I Sbjct: 63 VSDTVEALDPIAGAYTLEVSSPGMKRPLRRPSDFARFAGEEVELTTTAMEG-RRSYKGVI 121 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 T++T ++ E E + ISFD + L Sbjct: 122 AETTDTAVTIQPE-------GEEAVTISFDDVKKCTL 151 >gi|319939748|ref|ZP_08014105.1| ribosome maturation factor rimP [Streptococcus anginosus 1_2_62CV] gi|319811086|gb|EFW07397.1| ribosome maturation factor rimP [Streptococcus anginosus 1_2_62CV] Length = 162 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 9/153 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 + V++PVI+E + V I + + +L IFV++ G +T+ D +L+ ISP+LD Sbjct: 14 VKEVVEPVIQE-PYELVNIDYGKMGSDHVLSIFVDKS-GGITVNDTADLTDIISPLLDTI 71 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + Y LEV+SPG++RP+ K G + + + + G ++ E Sbjct: 72 KPDPFPEQYFLEVTSPGLERPLKTKEQLADAVGQYIHVSLYQAVDKSKTFEGTLLSFEED 131 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + K + + I + + ARL V Sbjct: 132 HLTMEYMDKTRKKV----VQIPYKLVSKARLAV 160 >gi|227534930|ref|ZP_03964979.1| protein of hypothetical function DUF150 [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187686|gb|EEI67753.1| protein of hypothetical function DUF150 [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 150 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 55/88 (62%), Gaps = 4/88 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 ++++++P++++ F + ++E L++++++ G +TL +C +S+A+S LD Sbjct: 1 MTALVKPILDDHHFYLTDVEFVKEGGGWYLRVYIDKT-GGITLDECVMVSEALSEKLDAM 59 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDF 109 + I Y LEVSSPG +RP+ ++D+ Sbjct: 60 DPDPIPQQYFLEVSSPGAERPLKHETDY 87 >gi|217033305|ref|ZP_03438736.1| hypothetical protein HP9810_9g58 [Helicobacter pylori 98-10] gi|216944246|gb|EEC23671.1| hypothetical protein HP9810_9g58 [Helicobacter pylori 98-10] Length = 146 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E + +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKKIEEKIEGVIESLGYLLYDVSLIKENEQHILRVSLKNPNGAVSLDICQQVSEIISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDF 109 LDV + I+ Y EVSS G++R + F Sbjct: 61 LDVCDFIQDAYIFEVSSMGLERTLKTPKHF 90 >gi|284929276|ref|YP_003421798.1| hypothetical protein UCYN_07210 [cyanobacterium UCYN-A] gi|284809720|gb|ADB95417.1| uncharacterized conserved protein [cyanobacterium UCYN-A] Length = 125 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 1/98 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 L I + PVI+EM V + K +L+ + N++L DC ++S+ + I Sbjct: 5 LIQQIIDLTTPVIKEMGIDIVNVVFHTNKCPSILRFDISNPAENISLDDCAKVSRTLESI 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 LD II Y LEVSSPGI + + + DF + G + Sbjct: 65 LDETTIIPHAYVLEVSSPGISQILNSERDFTTFQGFAI 102 >gi|253995582|ref|YP_003047646.1| hypothetical protein Mmol_0209 [Methylotenera mobilis JLW8] gi|253982261|gb|ACT47119.1| protein of unknown function DUF150 [Methylotenera mobilis JLW8] Length = 161 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/141 (24%), Positives = 76/141 (53%), Gaps = 18/141 (12%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDD-----GNMTLRDCEELSQAISP 78 D+ ++I+ + ++ + V + + + LL++F+++ + ++ + DC +S + Sbjct: 3 DLQTLIEKSVSQLGYELVDLEI-SNRGKLLRVFIDKQNPADSKDSVNIDDCVLVSNQLGN 61 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD----------- 127 +L VE+ I+ + RLEVSSPG+DR + +++D++R+ G V+ ++ + D Sbjct: 62 LLAVEHEID-YDRLEVSSPGMDRVLKKEADYVRFVGERVSIKLRVGIKDEGPNATETTLP 120 Query: 128 KQKLIGKIMGTSETGFFLEKE 148 ++ +G I G + LE E Sbjct: 121 RKTFLGLIQGVEDGHLLLEFE 141 >gi|118474205|ref|YP_892625.1| hypothetical protein CFF8240_1491 [Campylobacter fetus subsp. fetus 82-40] gi|261885775|ref|ZP_06009814.1| hypothetical protein CfetvA_11986 [Campylobacter fetus subsp. venerealis str. Azul-94] gi|259585736|sp|A0RQZ2|RIMP_CAMFF RecName: Full=Ribosome maturation factor rimP gi|118413431|gb|ABK81851.1| hypothetical protein CFF8240_1491 [Campylobacter fetus subsp. fetus 82-40] Length = 140 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 67/125 (53%), Gaps = 12/125 (9%) Query: 47 EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRK 106 E ++ ++++ ++ G ++L +CE +S+ +SPI DV + G + LEVSSPG++R + + Sbjct: 23 ENGRVIYRVYITKN-GGVSLEECEAVSKLLSPIYDVMPPVSGEWILEVSSPGLERKLSKI 81 Query: 107 SDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDS 166 F G +I+L+ DK ++ GKI+ + + + N I + F++ Sbjct: 82 EHFTLSIGEFA--KIILN--DKTEIKGKIVSVKDDNICINIK-------NNESIEVKFEN 130 Query: 167 LLSAR 171 + A+ Sbjct: 131 IKKAK 135 >gi|207109808|ref|ZP_03243970.1| hypothetical protein HpylH_11664 [Helicobacter pylori HPKX_438_CA4C1] Length = 143 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 54/83 (65%), Gaps = 1/83 (1%) Query: 28 VIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 +++ VIE + + +SL++E + +L++ ++ +G ++L C+++S+ ISP+LDV + I Sbjct: 5 LLEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPLLDVCDFI 64 Query: 87 EGHYRLEVSSPGIDRPMVRKSDF 109 + Y LEVSS G++R + F Sbjct: 65 QDAYILEVSSMGLERTLKTPKHF 87 >gi|152990172|ref|YP_001355894.1| hypothetical protein NIS_0423 [Nitratiruptor sp. SB155-2] gi|167012920|sp|A6Q228|RIMP_NITSB RecName: Full=Ribosome maturation factor rimP gi|151422033|dbj|BAF69537.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2] Length = 142 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 4/68 (5%) Query: 66 LRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS 125 L+ C E+S ISP+LDV + G Y LEVSSPG++R + + S F H V ++ ++ Sbjct: 44 LQKCVEISNLISPLLDVHPPVSGDYNLEVSSPGVERKLKKPSHF----EHSVGEKVRVTK 99 Query: 126 GDKQKLIG 133 D + + G Sbjct: 100 NDGETIEG 107 >gi|159036963|ref|YP_001536216.1| hypothetical protein Sare_1324 [Salinispora arenicola CNS-205] gi|259586188|sp|A8M743|RIMP_SALAI RecName: Full=Ribosome maturation factor rimP gi|157915798|gb|ABV97225.1| protein of unknown function DUF150 [Salinispora arenicola CNS-205] Length = 219 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 14/112 (12%) Query: 19 MGLAGDISS-------VIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCE 70 +G GD+++ V++PV++ + +S+ + ++Q+ V+ DG + L Sbjct: 29 VGRGGDLATRRARLHQVVEPVVQGAGYDLEDLSVSRAGRRHVVQVIVD-ADGGVDLDAVA 87 Query: 71 ELSQAISPILDVE-----NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 ++S+A+S LD +I+ G Y+LEVSSPG+ RP+ + R G +V Sbjct: 88 DVSRAVSAALDAAEEVGGDIVAGEYQLEVSSPGVARPLTLPRHWRRNTGRLV 139 >gi|317177213|dbj|BAJ55002.1| hypothetical protein HPF16_0405 [Helicobacter pylori F16] Length = 146 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ +IE + + +SL++E + +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKKIEEKIEGMIESLGYLLYDVSLIKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDF 109 LDV + I+ Y LEVSS G++R + F Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHF 90 >gi|259645270|sp|A1WLI5|RIMP_VEREI RecName: Full=Ribosome maturation factor rimP Length = 245 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 39/55 (70%), Gaps = 2/55 (3%) Query: 63 NMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 ++TL DCE++++ + L+V+ + + RLEV+SPGIDRP+ + D LR+ G V+ Sbjct: 99 SVTLEDCEKVTRQLQFALEVDGVQ--YQRLEVASPGIDRPLRGEQDLLRFAGSVI 151 >gi|297537314|ref|YP_003673083.1| hypothetical protein M301_0118 [Methylotenera sp. 301] gi|297256661|gb|ADI28506.1| protein of unknown function DUF150 [Methylotenera sp. 301] Length = 161 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 60/97 (61%), Gaps = 7/97 (7%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDD-----GNMTLRDCEELSQAISP 78 D+ ++I+ + ++ + V + + + LL++F+++ + ++ + DC +S + Sbjct: 3 DLHTLIEKSVSQLGYELVDLEI-SNRGKLLRVFIDKLNPADIKDSVNIDDCSLVSNQLGN 61 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGH 115 +L VEN I+ + RLEVSSPG+DR + +++DF+R+ G Sbjct: 62 LLAVENDID-YDRLEVSSPGMDRVLKKEADFVRFIGE 97 >gi|288904584|ref|YP_003429805.1| hypothetical protein GALLO_0368 [Streptococcus gallolyticus UCN34] gi|306830579|ref|ZP_07463746.1| protein of hypothetical function DUF150 [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977558|ref|YP_004287274.1| hypothetical protein SGGBAA2069_c03580 [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288731309|emb|CBI12860.1| conserved hypothetical protein [Streptococcus gallolyticus UCN34] gi|304427297|gb|EFM30402.1| protein of hypothetical function DUF150 [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177486|emb|CBZ47530.1| conserved hypothetical protein [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 177 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 81/159 (50%), Gaps = 21/159 (13%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK---NLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 ++ V+ P I+E F V + EK + +L I +++ +G +T+ D EL++ ISP+LD Sbjct: 29 VTEVVAPAIKE-PFELVDVEY--EKMGSDYVLSILIDKPEG-ITVDDTAELTEIISPLLD 84 Query: 82 V--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI-GKIM-- 136 + Y LEVSSPG++RP+ K + G V + + DK K+ G ++ Sbjct: 85 AIKPDPFPEQYMLEVSSPGLERPLKTKEALEKAVGSYVNVSL-YKAIDKVKVFQGDLVAF 143 Query: 137 -GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G + T +L+K ++ + I + ++ ARL V Sbjct: 144 DGDTLTIDYLDKTRKK-------TVEIPYSTVAKARLAV 175 >gi|114566430|ref|YP_753584.1| hypothetical protein Swol_0896 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318498|sp|Q0AYJ1|RIMP_SYNWW RecName: Full=Ribosome maturation factor rimP gi|114337365|gb|ABI68213.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 139 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 54/91 (59%), Gaps = 3/91 (3%) Query: 47 EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRK 106 E K L++F+++D+G + L C + ++AI D + I + LEVSSPG+DR + ++ Sbjct: 21 ENKEQFLRVFIDKDNG-VDLDMCSQANRAIKESFDEQEIPYDY--LEVSSPGLDRVLKKE 77 Query: 107 SDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 D+ R++G+ V + S Q++ G ++G Sbjct: 78 RDWERFSGYRVRIKTRKSFPGPQRITGILLG 108 >gi|322376137|ref|ZP_08050646.1| SP14.3 protein [Streptococcus sp. C300] gi|321278905|gb|EFX55949.1| SP14.3 protein [Streptococcus sp. C300] Length = 159 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/110 (32%), Positives = 60/110 (54%), Gaps = 6/110 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 + VI+PVI+ F V I + +++L IFV++ +G +TL D +L++ ISP LD Sbjct: 11 VREVIEPVIQ-APFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEIISPALDTI 68 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 + Y LE++SPG++RP+ K G + + + DKQK+ Sbjct: 69 KPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGL-YQAIDKQKV 117 >gi|227510251|ref|ZP_03940300.1| protein of hypothetical function DUF150 [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227513180|ref|ZP_03943229.1| protein of hypothetical function DUF150 [Lactobacillus buchneri ATCC 11577] gi|227524395|ref|ZP_03954444.1| protein of hypothetical function DUF150 [Lactobacillus hilgardii ATCC 8290] gi|227083561|gb|EEI18873.1| protein of hypothetical function DUF150 [Lactobacillus buchneri ATCC 11577] gi|227088626|gb|EEI23938.1| protein of hypothetical function DUF150 [Lactobacillus hilgardii ATCC 8290] gi|227189903|gb|EEI69970.1| protein of hypothetical function DUF150 [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 157 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/133 (23%), Positives = 68/133 (51%), Gaps = 4/133 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 + V++P++++ +F + ++E K+ L++++++ G +T+ DC +S +S LD Sbjct: 8 VKQVVKPILDKHTFYLFDVEFVKENKSWYLRVYIDKK-GGITIDDCVLVSDELSEKLDEM 66 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + I Y LEVSSPG +RP+ + + G + + + ++ G + + Sbjct: 67 DPDPIPQQYFLEVSSPGAERPLRNDEELQQAVGEYIHISLYQNLNGQKAFEGFLRSVTSD 126 Query: 142 GFFLEKEKRGEKD 154 L+ +K G+ D Sbjct: 127 ELVLQNDKWGKND 139 >gi|157151233|ref|YP_001449858.1| hypothetical protein SGO_0542 [Streptococcus gordonii str. Challis substr. CH1] gi|259586201|sp|A8AVP8|RIMP_STRGC RecName: Full=Ribosome maturation factor rimP gi|157076027|gb|ABV10710.1| conserved hypothetical protein [Streptococcus gordonii str. Challis substr. CH1] Length = 162 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 76/154 (49%), Gaps = 11/154 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 +++VI+P I F V + + + +L +FV++ +G +T+ D +L+ ISP+LD Sbjct: 14 VTAVIEPAIT-APFELVDVEYGKIGSDYVLSVFVDKPEG-ITVNDTADLTDIISPLLDTI 71 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI-GKIMGTSE 140 + Y LEV+SPG++RP+ K G + + S DKQK+ G ++ E Sbjct: 72 KPDPFPEQYFLEVTSPGLERPLKTKEQVEAAVGQYIHVGL-YKSLDKQKVFEGTLLQFKE 130 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 LE + K +I I + + ARL V Sbjct: 131 DVLTLEYMDKTRKK----EIDIPYSLVSKARLAV 160 >gi|322378931|ref|ZP_08053345.1| hypothetical protein HSUHS1_0574 [Helicobacter suis HS1] gi|322379785|ref|ZP_08054082.1| hypothetical protein HSUHS5_0146 [Helicobacter suis HS5] gi|321147753|gb|EFX42356.1| hypothetical protein HSUHS5_0146 [Helicobacter suis HS5] gi|321148607|gb|EFX43093.1| hypothetical protein HSUHS1_0574 [Helicobacter suis HS1] Length = 152 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 1/100 (1%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 ++ ++++ ++ M ++ L+E K +L+I ++ +G +L CEE S ISP+LDV Sbjct: 6 ELENLLETTLKGMGCALYDVAFLKENKRDILRISIKALEGPTSLDICEEASLLISPLLDV 65 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV 122 + Y LEVSS G++R + + F G +V C+ + Sbjct: 66 HAPFKNAYTLEVSSMGLERSLSKLKHFKLSIGDLVECKTI 105 >gi|313889634|ref|ZP_07823277.1| conserved hypothetical protein [Streptococcus pseudoporcinus SPIN 20026] gi|313121931|gb|EFR45027.1| conserved hypothetical protein [Streptococcus pseudoporcinus SPIN 20026] Length = 176 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 19/156 (12%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD--V 82 +S VI+P E + ++ + LL I V+R+ G +T+ D EL++ ISP+LD Sbjct: 32 VSPVIRPPFELVDVEYEKMG----SDYLLSILVDRE-GGITVEDTTELTEIISPLLDQIS 86 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI-GKIM---GT 138 + Y LEVSSPG++RP+ K + G V + + DK K+ G ++ G Sbjct: 87 PDPFPDQYMLEVSSPGLERPLKTKEAIEKAVGSYVNVSL-YKAIDKVKVFQGDLISFDGE 145 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + +L+K + +AI + ++ ARL V Sbjct: 146 TLMIDYLDKTRHK-------VVAIPYQTVAKARLAV 174 >gi|317495159|ref|ZP_07953529.1| hypothetical protein HMPREF0432_00131 [Gemella moribillum M424] gi|316914581|gb|EFV36057.1| hypothetical protein HMPREF0432_00131 [Gemella moribillum M424] Length = 154 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 5/124 (4%) Query: 51 LLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFL 110 L+I+ ++D G +TL DC LS+ ++ LD E+ I Y LEVSSPGI+R + + + Sbjct: 34 FFLRIYFDKD-GGLTLDDCVLLSEKLAEELDKEDFISDKYYLEVSSPGIERELRNLEEVI 92 Query: 111 RWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 G V + ++++ G I+ + +E + + + IS++ + Sbjct: 93 DSIGKHVYIKTYEKVDNQKEFYGDILDVEDKEITIEYKDKARVKKS----IISYEKIAKI 148 Query: 171 RLIV 174 RL V Sbjct: 149 RLAV 152 >gi|239815724|ref|YP_002944634.1| hypothetical protein Vapar_2746 [Variovorax paradoxus S110] gi|259645131|sp|C5CLW1|RIMP_VARPS RecName: Full=Ribosome maturation factor rimP gi|239802301|gb|ACS19368.1| protein of unknown function DUF150 [Variovorax paradoxus S110] Length = 212 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 4/75 (5%) Query: 64 MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVL 123 +T+ DCE++++ + L+V+ + + RLEVSSPGIDRP+ + DF R+ G V+ +I L Sbjct: 54 VTVEDCEKVTRQLQFALEVDGV--DYKRLEVSSPGIDRPLRNEQDFERFVGEVI--DITL 109 Query: 124 SSGDKQKLIGKIMGT 138 + G++ T Sbjct: 110 KAPMGAAAAGQVSAT 124 >gi|41409008|ref|NP_961844.1| hypothetical protein MAP2910c [Mycobacterium avium subsp. paratuberculosis K-10] gi|51316952|sp|Q73VV1|RIMP_MYCPA RecName: Full=Ribosome maturation factor rimP gi|41397367|gb|AAS05227.1| hypothetical protein MAP_2910c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 178 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 7/71 (9%) Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 LS++ S +LD + IE HY LEVSSPG+DRP+ F R G V ++VLS D + Sbjct: 58 LSRSASALLDKLDTIEDHYVLEVSSPGVDRPLRTPKHFRRARGRKV--DVVLS--DNSTV 113 Query: 132 IGKIMGTSETG 142 G++ ETG Sbjct: 114 TGRV---GETG 121 >gi|15645660|ref|NP_207836.1| hypothetical protein HP1046 [Helicobacter pylori 26695] gi|6647978|sp|O25687|RIMP_HELPY RecName: Full=Ribosome maturation factor rimP gi|2314193|gb|AAD08091.1| conserved hypothetical protein [Helicobacter pylori 26695] Length = 146 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I VIE + + +SL++E + +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKKIEEKIGGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDF 109 LDV + I+ Y LEVSS G++R + F Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHF 90 >gi|261407940|ref|YP_003244181.1| hypothetical protein GYMC10_4147 [Paenibacillus sp. Y412MC10] gi|329929353|ref|ZP_08283106.1| hypothetical protein HMPREF9412_5355 [Paenibacillus sp. HGF5] gi|261284403|gb|ACX66374.1| protein of unknown function DUF150 [Paenibacillus sp. Y412MC10] gi|328936722|gb|EGG33165.1| hypothetical protein HMPREF9412_5355 [Paenibacillus sp. HGF5] Length = 153 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 10/151 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++QP ++E F V + ++E N L++FV++D + + DC +S+ +S LD Sbjct: 10 VEEMVQPYLDEHGFELVDVEYVKEGSNWFLRVFVDKDG-GIDIDDCGLISEHLSQKLDEN 68 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I Y LEVSSPG +RP+ +K D + G V + ++ GK+ Sbjct: 69 DPIPTAYFLEVSSPGAERPLKKKEDVAKSVGKNVFVTVYEPINGLKEFEGKLESFDNEEL 128 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ K+ Q I + + SARL + Sbjct: 129 VIQTAKK--------QHVIPYAKVASARLAI 151 >gi|118464499|ref|YP_882873.1| hypothetical protein MAV_3696 [Mycobacterium avium 104] gi|166990891|sp|A0QIY5|RIMP_MYCA1 RecName: Full=Ribosome maturation factor rimP gi|118165786|gb|ABK66683.1| conserved hypothetical protein [Mycobacterium avium 104] Length = 178 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 7/71 (9%) Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 LS++ S +LD + IE HY LEVSSPG+DRP+ F R G V ++VLS D + Sbjct: 58 LSRSASALLDKLDTIEDHYVLEVSSPGVDRPLRTPKHFRRARGRKV--DVVLS--DNSTV 113 Query: 132 IGKIMGTSETG 142 G++ ETG Sbjct: 114 TGRV---GETG 121 >gi|315222141|ref|ZP_07864050.1| UPF0090 protein [Streptococcus anginosus F0211] gi|315188767|gb|EFU22473.1| UPF0090 protein [Streptococcus anginosus F0211] Length = 162 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 11/154 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 + V++PVI+E + V I + + +L IFV++ G +T+ D +L+ ISP+LD Sbjct: 14 VKEVVEPVIQE-PYELVNIEYGKMGSDHVLSIFVDKP-GGITVNDTADLTDIISPLLDTI 71 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI-GKIMGTSE 140 + Y LEV+SPG++RP+ K G + + + DK K+ G ++ E Sbjct: 72 KPDPFPEQYFLEVTSPGLERPLKTKEQLAAAVGEYIHVSL-YQALDKSKVFEGTLLSFEE 130 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + K + + I + + ARL V Sbjct: 131 DHLTMEYMDKTRKKV----VQIPYQLVSKARLAV 160 >gi|297565904|ref|YP_003684876.1| hypothetical protein Mesil_1476 [Meiothermus silvanus DSM 9946] gi|296850353|gb|ADH63368.1| protein of unknown function DUF150 [Meiothermus silvanus DSM 9946] Length = 143 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 9/127 (7%) Query: 28 VIQPVIEEMSFRSVQISLLEEKN-LLLQIFVER-DDGNMTLRDCEELSQAISPILDVENI 85 V Q ++ M + +++SL N +L + +ER D+ +++ + E S+ + LD ++ Sbjct: 3 VAQDLLGPMGYDVLEVSLKGSGNSRVLTVRLERKDEVPISVEELERASRVLGSELDRLDL 62 Query: 86 IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE--TGF 143 IE YRLEV SPG DRP++ F R+ G + ++ G+ G+I G SE F Sbjct: 63 IESAYRLEVESPGPDRPLLTPRHFERFAG--LKAKVRSPEGN---FTGRIEGVSEDTVTF 117 Query: 144 FLEKEKR 150 + KE R Sbjct: 118 LVGKELR 124 >gi|322386002|ref|ZP_08059642.1| protein of hypothetical function DUF150 [Streptococcus cristatus ATCC 51100] gi|321269985|gb|EFX52905.1| protein of hypothetical function DUF150 [Streptococcus cristatus ATCC 51100] Length = 164 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 11/154 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 + VI+P I+E + V I + + +L +FV++ +G +T+ D +L+ ISP+LD Sbjct: 16 VREVIEPAIQE-PYELVDIEYGKMGGDYVLSVFVDKPEG-ITVNDTADLTDIISPLLDSI 73 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI-GKIMGTSE 140 + Y LEV+SPG++RP+ K G + + + DK K+ G ++G + Sbjct: 74 KPDPFPDQYFLEVTSPGLERPLKTKEAVAAAVGSYIHVSL-YKALDKNKVFEGTLLGFED 132 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + K ++ I ++ + ARL V Sbjct: 133 DVLLMEYMDKTRKK----EVEIPYNLVSKARLAV 162 >gi|317153846|ref|YP_004121894.1| hypothetical protein Daes_2142 [Desulfovibrio aespoeensis Aspo-2] gi|316944097|gb|ADU63148.1| protein of unknown function DUF150 [Desulfovibrio aespoeensis Aspo-2] Length = 156 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 +++I+++ DG +T+ C ++S+ +S +L+VE+ I G Y LEVSSPG+DR + Sbjct: 37 IIRIYIDGPDG-VTIDQCAKVSRQVSLLLEVEDTIPGAYILEVSSPGLDRRFFSTAQMAD 95 Query: 112 WNGHVVACEIVLSSGDKQKLIG 133 + G V + + ++K+ G Sbjct: 96 FVGKQVTALLYEARDGRRKVTG 117 >gi|317012240|gb|ADU82848.1| Ribosome maturation factor rimP [Helicobacter pylori Lithuania75] Length = 146 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 53/86 (61%), Gaps = 1/86 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I I+ VIE + + +SL++E + +L++ ++ +G + L C+++S+ ISP+LDV Sbjct: 5 IEEKIEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVNLDICQQVSEIISPLLDVC 64 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDF 109 + I+ Y LEVSS G++R + F Sbjct: 65 DFIQDAYILEVSSMGLERVLKTPKHF 90 >gi|118594130|ref|ZP_01551477.1| hypothetical protein MB2181_00640 [Methylophilales bacterium HTCC2181] gi|118439908|gb|EAV46535.1| hypothetical protein MB2181_00640 [Methylophilales bacterium HTCC2181] Length = 145 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 69/125 (55%), Gaps = 4/125 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 +A D+ S I+ ++ ++ + V + ++ LL ++F+++ + +T+ DC +S ++ L Sbjct: 1 MAFDVESFIEKMVTQLGYELVDLEIINHGQLL-RVFIDKPE-IVTIDDCVLVSNQLNHAL 58 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 VE + RLE+SSPG+DR + + DF R++G + + +++ G + G + Sbjct: 59 SVEEEFD-FGRLEISSPGVDRVIKKLEDFGRFDGEKIKIKTRSPISNRRNFSGVLRGI-K 116 Query: 141 TGFFL 145 GF L Sbjct: 117 AGFIL 121 >gi|302554521|ref|ZP_07306863.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM 40736] gi|302472139|gb|EFL35232.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM 40736] Length = 169 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 67/127 (52%), Gaps = 8/127 (6%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII-EGHYRLEVSSPGIDRPMVRKS 107 + +L++ V+ D G L ++S+A+S LD + + EG Y LEV +PG +RP+ Sbjct: 34 RKRVLRVVVDSDTG-ADLDRIADVSRALSAKLDETDAMGEGEYTLEVGTPGAERPLTEHR 92 Query: 108 DFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSL 167 ++R +V + L+ GD +L+ +I+ + G ++ E G K I+FD + Sbjct: 93 HYVRATDRLVKFQ--LAEGD--ELVARILKVDDEG--VDAEVPGVKGRKATARRIAFDDI 146 Query: 168 LSARLIV 174 + AR+ V Sbjct: 147 VRARVQV 153 >gi|121609703|ref|YP_997510.1| hypothetical protein Veis_2751 [Verminephrobacter eiseniae EF01-2] gi|121554343|gb|ABM58492.1| protein of unknown function DUF150 [Verminephrobacter eiseniae EF01-2] Length = 295 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 39/55 (70%), Gaps = 2/55 (3%) Query: 63 NMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 ++TL DCE++++ + L+V+ + + RLEV+SPGIDRP+ + D LR+ G V+ Sbjct: 149 SVTLEDCEKVTRQLQFALEVDGVQ--YQRLEVASPGIDRPLRGEQDLLRFAGSVI 201 >gi|329767073|ref|ZP_08258601.1| hypothetical protein HMPREF0428_00298 [Gemella haemolysans M341] gi|328837798|gb|EGF87423.1| hypothetical protein HMPREF0428_00298 [Gemella haemolysans M341] Length = 154 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 2/86 (2%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M + + ++ E F + ++E L+I+ ++D G ++L DC LS+ ++ Sbjct: 1 MSIVEKVKTIATKQTENTEFSLYDVEYVKEGTEYFLRIYFDKD-GGLSLDDCVLLSEKLA 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPM 103 LD E+ I Y LEVSSPGI+R + Sbjct: 60 EELDKEDFISDKYYLEVSSPGIERDL 85 >gi|324992029|gb|EGC23951.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK405] gi|324994122|gb|EGC26036.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK678] gi|325697659|gb|EGD39544.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK160] gi|327490546|gb|EGF22327.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK1058] Length = 177 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 67/131 (51%), Gaps = 15/131 (11%) Query: 50 NLLLQIFVERDDGNMTLRDCEELSQAISPILD--VENIIEGHYRLEVSSPGIDRPMVRKS 107 + +L +FV++ +G +T+ D +L+ ISP+LD + Y LEV+SPG++RP+ K Sbjct: 54 DYVLSVFVDKPEG-ITVNDTADLTDIISPLLDQIKPDPFPEQYFLEVTSPGLERPLKTKE 112 Query: 108 DFLRWNGHVVACEIVLSSGDKQKLI-GKIMGTSETGF---FLEKEKRGEKDMNELQIAIS 163 G + + + DKQK+ G ++ +E +L+K +R E + I Sbjct: 113 QLADAVGSYIHVSL-YKAVDKQKVFEGTLLSFAEDVLHMEYLDKTRRKE-------VEIP 164 Query: 164 FDSLLSARLIV 174 + + ARL V Sbjct: 165 YSLVSKARLAV 175 >gi|332686769|ref|YP_004456543.1| clustered with transcription termination protein NusA [Melissococcus plutonius ATCC 35311] gi|332370778|dbj|BAK21734.1| clustered with transcription termination protein NusA [Melissococcus plutonius ATCC 35311] Length = 157 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/96 (27%), Positives = 55/96 (57%), Gaps = 4/96 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 ++ ++ P++E+ F + + ++E K+ L++F+++ G + + +C +S+ +S LD Sbjct: 8 VTKLVTPILEKQQFELIDVEFIKEGKSWYLRVFIDKK-GGIDIEECAFVSEQLSEQLDSL 66 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + I Y LEVSSPG +RP+ + D+ G + Sbjct: 67 EPDPIPQAYFLEVSSPGAERPLKNEHDYFNAIGEYI 102 >gi|315648099|ref|ZP_07901200.1| hypothetical protein PVOR_22524 [Paenibacillus vortex V453] gi|315276745|gb|EFU40088.1| hypothetical protein PVOR_22524 [Paenibacillus vortex V453] Length = 153 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 10/151 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++QP + E F V + ++E N L++FV++D + + DC +S+ +S LD Sbjct: 10 VEEMVQPYLNEHGFELVDVEYVKEGSNWFLRVFVDKDG-GIDIDDCGLISEYLSQKLDEN 68 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I Y LEVSSPG +RP+ +K D + G V + ++ GK+ Sbjct: 69 DPIPTAYFLEVSSPGAERPLKKKEDVAKSVGKNVFVTVYEPINGLKEFEGKLESFDNEEL 128 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ K+ Q I + + SARL + Sbjct: 129 VIQTVKK--------QYVIPYAKVASARLAI 151 >gi|302338536|ref|YP_003803742.1| protein of unknown function DUF150 [Spirochaeta smaragdinae DSM 11293] gi|301635721|gb|ADK81148.1| protein of unknown function DUF150 [Spirochaeta smaragdinae DSM 11293] Length = 175 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/156 (24%), Positives = 82/156 (52%), Gaps = 20/156 (12%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISP--- 78 G ++ ++P+IE + +++V+++ + + + + + D + L DCE++ +AI P Sbjct: 28 GPLTGELEPIIEGLGYKTVEVAAKKTGSRHHVSVIISGRDSGIGLTDCEKVHKAILPRLE 87 Query: 79 -ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LD +I +EVSSPGI R + ++F + G +V +L G+ + ++G+IM Sbjct: 88 ILLDDRDIY-----VEVSSPGISRNLKCGAEFGIFVGSLVR---LLLEGENEWIVGRIME 139 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E +E ++D +D++ A+L+ Sbjct: 140 SDERKVVIEMSDGKKEDY-------LYDTIRKAKLV 168 >gi|325686966|gb|EGD28990.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK72] Length = 177 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 67/131 (51%), Gaps = 15/131 (11%) Query: 50 NLLLQIFVERDDGNMTLRDCEELSQAISPILD--VENIIEGHYRLEVSSPGIDRPMVRKS 107 + +L +FV++ +G +T+ D +L+ ISP+LD + Y LEV+SPG++RP+ K Sbjct: 54 DYVLSVFVDKPEG-ITVNDTADLTDIISPLLDQIKPDPFPEQYFLEVTSPGLERPLKTKE 112 Query: 108 DFLRWNGHVVACEIVLSSGDKQKLI-GKIMGTSETGF---FLEKEKRGEKDMNELQIAIS 163 G + + + DKQK+ G ++ E +L+K +R E + I+ Sbjct: 113 QLADAVGSYIHVSL-YKAVDKQKVFEGTLLSFEEDVLHLEYLDKTRRKE-------VEIT 164 Query: 164 FDSLLSARLIV 174 + + ARL V Sbjct: 165 YSLVSKARLAV 175 >gi|154497679|ref|ZP_02036057.1| hypothetical protein BACCAP_01655 [Bacteroides capillosus ATCC 29799] gi|150273177|gb|EDN00322.1| hypothetical protein BACCAP_01655 [Bacteroides capillosus ATCC 29799] Length = 151 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 2/86 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ QP+ E + + E L+++++++ G + + DCE +S+ +S LD Sbjct: 8 VRALAQPIAAENGCSIWDVEYVREAGTWFLRVYLDKE-GGVNIDDCEAVSRPLSDALDEA 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDF 109 + IEG Y LEVSS GIDR + F Sbjct: 67 DPIEGSYTLEVSSAGIDRVLRHPEHF 92 >gi|42523052|ref|NP_968432.1| hypothetical protein Bd1545 [Bdellovibrio bacteriovorus HD100] gi|51316637|sp|Q6MMS8|RIMP_BDEBA RecName: Full=Ribosome maturation factor rimP gi|39575257|emb|CAE79425.1| conserved hypothetical protein [Bdellovibrio bacteriovorus HD100] Length = 174 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 31/100 (31%), Positives = 56/100 (56%), Gaps = 9/100 (9%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDD-GNMTLRDCEELSQAISPI 79 +A D+++ V+ ++ F + K L++F++R++ G +++ DC +S+ +S I Sbjct: 14 IANDVAAAQGCVLYDIEFVGLG------KGRTLRLFIDREEEGAISIEDCTNVSRGLSEI 67 Query: 80 LDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 LD E I G Y LEVS+PG+DR + + F + G V Sbjct: 68 LDADEEMIPGGEYNLEVSTPGLDRHLKKPWHFKKAIGKKV 107 >gi|329769655|ref|ZP_08261059.1| hypothetical protein HMPREF0433_00823 [Gemella sanguinis M325] gi|328838410|gb|EGF88019.1| hypothetical protein HMPREF0433_00823 [Gemella sanguinis M325] Length = 154 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 50/86 (58%), Gaps = 2/86 (2%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M + + S+ +++ ++ + ++E + L+++ ++D G ++L DC LS+ ++ Sbjct: 1 MSIVQKVKSIATEQVKDSNYSLYDVEYVKEGSDYFLRVYFDKD-GGLSLDDCVLLSERLA 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPM 103 LD E+ I Y LEVSSPGI+R + Sbjct: 60 EELDKEDFISDKYYLEVSSPGIERDL 85 >gi|332362936|gb|EGJ40725.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK49] Length = 149 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 66/131 (50%), Gaps = 15/131 (11%) Query: 50 NLLLQIFVERDDGNMTLRDCEELSQAISPILD--VENIIEGHYRLEVSSPGIDRPMVRKS 107 + +L +FV++ +G +T+ D +L+ ISP+LD + Y LEV+SPG++RP+ K Sbjct: 26 DYVLSVFVDKPEG-ITVNDTADLTDIISPLLDQIKPDPFPEQYFLEVTSPGLERPLKTKE 84 Query: 108 DFLRWNGHVVACEIVLSSGDKQKLI-GKIMGTSETGF---FLEKEKRGEKDMNELQIAIS 163 G + + + DKQK+ G ++ E +L+K +R E + I Sbjct: 85 QLSNAVGSYIHVSL-YKAVDKQKVFEGTLLSFEEDVLHMEYLDKTRRKE-------VEIP 136 Query: 164 FDSLLSARLIV 174 + + ARL V Sbjct: 137 YSLVSKARLAV 147 >gi|288574933|ref|ZP_06393290.1| protein of unknown function DUF150 [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570674|gb|EFC92231.1| protein of unknown function DUF150 [Dethiosulfovibrio peptidovorans DSM 11002] Length = 181 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 39/56 (69%), Gaps = 2/56 (3%) Query: 62 GNMTLRDCEELSQAISPILDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGH 115 G +++RDCE +S+ I+ L+ E++++ Y LEVSSPG++RP+ DF R++G Sbjct: 44 GGISVRDCEIVSRRINNWLEESGEDLLDDRYYLEVSSPGLERPLFSLDDFRRFSGK 99 >gi|331002484|ref|ZP_08326002.1| hypothetical protein HMPREF0491_00864 [Lachnospiraceae oral taxon 107 str. F0167] gi|330410300|gb|EGG89734.1| hypothetical protein HMPREF0491_00864 [Lachnospiraceae oral taxon 107 str. F0167] Length = 154 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 2/90 (2%) Query: 29 IQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 ++ + E+ F V + ++E L+ + ++ G + + DC ++S+ +S LD + I+ Sbjct: 15 LEKLSSELDFEVVDVEFVKEAGEHYLRAYCDKT-GGIGIEDCADISRHLSDWLDENDFID 73 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 Y LEVSSPG+ R + + DFLR G V Sbjct: 74 EGYILEVSSPGLGRTLKKDKDFLRELGKEV 103 >gi|315928474|gb|EFV07784.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni 305] Length = 114 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 4/67 (5%) Query: 64 MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVL 123 + L DC LS+ +SPI DVE + G Y LEVSS G++R + + F + +V + Sbjct: 45 VNLDDCARLSEILSPIFDVEPPVSGEYFLEVSSAGLERKLSKIEHFAKSINELVK----I 100 Query: 124 SSGDKQK 130 ++G+K+K Sbjct: 101 TTGEKEK 107 >gi|319793510|ref|YP_004155150.1| hypothetical protein Varpa_2847 [Variovorax paradoxus EPS] gi|315595973|gb|ADU37039.1| protein of unknown function DUF150 [Variovorax paradoxus EPS] Length = 215 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 38/54 (70%), Gaps = 2/54 (3%) Query: 64 MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 +T+ DCE++++ + L+V+ + + RLEVSSPGIDRP+ + DF R+ G V+ Sbjct: 54 VTVEDCEKVTRQLQFALEVDGV--DYKRLEVSSPGIDRPLRNEQDFERFVGSVI 105 >gi|160898429|ref|YP_001564011.1| hypothetical protein Daci_2988 [Delftia acidovorans SPH-1] gi|226703492|sp|A9C1Z0|RIMP_DELAS RecName: Full=Ribosome maturation factor rimP gi|160364013|gb|ABX35626.1| protein of unknown function DUF150 [Delftia acidovorans SPH-1] Length = 192 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 37/54 (68%), Gaps = 2/54 (3%) Query: 64 MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 +T+ DCE++++ + L+V+ + RLEVSSPGIDRP+ + DF R+ G V+ Sbjct: 52 VTVEDCEKITRQLQFALEVDGA--DYTRLEVSSPGIDRPLRHEQDFTRFVGEVI 103 >gi|262282170|ref|ZP_06059939.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] gi|262262624|gb|EEY81321.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] Length = 162 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 76/154 (49%), Gaps = 11/154 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 +++VI+P I F V + + + +L +FV++ +G +T+ D +L+ ISP+LD Sbjct: 14 VTAVIEPAIT-APFELVDVEYGKIGSDYVLSVFVDKPEG-ITVNDTADLTDIISPLLDTI 71 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI-GKIMGTSE 140 + Y LEV+SPG++RP+ K G + + S DKQK+ G ++ E Sbjct: 72 KPDPFPEQYFLEVTSPGLERPLKTKEQVEAAVGQYIHVGL-YKSLDKQKVFEGTLLQFKE 130 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + K +I I + + ARL V Sbjct: 131 DVLTIEYMDKTRKK----EIDIPYSLVSKARLAV 160 >gi|218960601|ref|YP_001740376.1| hypothetical protein CLOAM0262 [Candidatus Cloacamonas acidaminovorans] gi|167729258|emb|CAO80169.1| conserved hypothetical protein [Candidatus Cloacamonas acidaminovorans] Length = 156 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 5/77 (6%) Query: 62 GNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 G +TL +C S A+ L++ ++I Y LEVSSPG++RP+ KS ++ VA + Sbjct: 45 GGVTLDECAAFSNALGKELEIFDLIPERYFLEVSSPGLERPLKLKSHYVSAINEKVAVQ- 103 Query: 122 VLSSGDKQKLIGKIMGT 138 +G+++K IMGT Sbjct: 104 -FQAGEERK---SIMGT 116 >gi|256827234|ref|YP_003151193.1| hypothetical protein Ccur_08070 [Cryptobacterium curtum DSM 15641] gi|256583377|gb|ACU94511.1| uncharacterized conserved protein [Cryptobacterium curtum DSM 15641] Length = 177 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 6/121 (4%) Query: 28 VIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 ++P E V I ++ K +++F++ DG ++ I+ I+D + Sbjct: 31 ALEPTAREKGIEIVSIEIVGSRKAPTIRVFIDTPDG-VSFDALASAQSWINEIMDAIDPF 89 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG--DKQKLIGKIMGTSETGFF 144 G Y LEVSSPGIDRP+ F R++G +IVL + + K G + G ++ Sbjct: 90 PGAYMLEVSSPGIDRPLRTPEHFQRFSGQ--EAQIVLRAPIDGRSKFTGMLKGFADGAVL 147 Query: 145 L 145 L Sbjct: 148 L 148 >gi|307297717|ref|ZP_07577523.1| protein of unknown function DUF150 [Thermotogales bacterium mesG1.Ag.4.2] gi|306916977|gb|EFN47359.1| protein of unknown function DUF150 [Thermotogales bacterium mesG1.Ag.4.2] Length = 177 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 6/124 (4%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSD 108 K L++I +++ DG +++ DCE S LD +++ Y L V SPG++R + D Sbjct: 58 KKRLVKITIDKLDGYVSISDCESFSADFGRALDSADLVPFSYDLVVESPGLERALRDLKD 117 Query: 109 FLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLL 168 ++R+ G + LIGKI+ +E + G+ +IA F ++ Sbjct: 118 YVRFTGEKAKVILKEPIEGVSVLIGKIISCENDVVTVESSENGK------EIAFHFSNVK 171 Query: 169 SARL 172 A L Sbjct: 172 RANL 175 >gi|327459331|gb|EGF05677.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK1] Length = 177 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 66/131 (50%), Gaps = 15/131 (11%) Query: 50 NLLLQIFVERDDGNMTLRDCEELSQAISPILD--VENIIEGHYRLEVSSPGIDRPMVRKS 107 + +L +FV++ +G +T+ D +L+ ISP+LD + Y LEV+SPG++RP+ K Sbjct: 54 DYVLSVFVDKSEG-ITVNDTADLTDIISPLLDQIKPDPFPEQYFLEVTSPGLERPLKTKE 112 Query: 108 DFLRWNGHVVACEIVLSSGDKQKLI-GKIMGTSETGF---FLEKEKRGEKDMNELQIAIS 163 G + + + DKQK+ G ++ E +L+K +R E + I Sbjct: 113 QLADAVGSYINVSL-YKAVDKQKVFEGTLLSFEEDVLHMEYLDKTRRKE-------VEIP 164 Query: 164 FDSLLSARLIV 174 + + ARL V Sbjct: 165 YSLVSKARLAV 175 >gi|124515702|gb|EAY57211.1| conserved protein of unknown function [Leptospirillum rubarum] Length = 167 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 5/120 (4%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 + ++FV+ G + L E +S+ IS +LDV + G YRLEVSSPG+DR + D L Sbjct: 30 VFKVFVDHPQG-VGLDQLEAVSRRISDLLDVLDPFPGKYRLEVSSPGLDRVLRIPEDLLL 88 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 G + ++ Q++ +G+ E G L G+K +L+ +I D + R Sbjct: 89 HVGKHIKVKMK-EPFQGQRVFRGTIGSLEAGVLLISSVEGKK---QLKHSIPLDLVAEVR 144 >gi|327462401|gb|EGF08726.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK1057] Length = 177 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 66/131 (50%), Gaps = 15/131 (11%) Query: 50 NLLLQIFVERDDGNMTLRDCEELSQAISPILD--VENIIEGHYRLEVSSPGIDRPMVRKS 107 + +L +FV++ +G +T+ D +L+ ISP+LD + Y LEV+SPG++RP+ K Sbjct: 54 DYVLSVFVDKPEG-ITVNDTADLTDIISPLLDQIKPDPFPEQYFLEVTSPGLERPLKTKE 112 Query: 108 DFLRWNGHVVACEIVLSSGDKQKLI-GKIMGTSETGF---FLEKEKRGEKDMNELQIAIS 163 G + + + DKQK+ G ++ E +L+K +R E + I Sbjct: 113 QLADAVGSYIHVSL-YKAVDKQKVFEGTLLSFEEEVLHMEYLDKTRRKE-------VEIP 164 Query: 164 FDSLLSARLIV 174 + + ARL V Sbjct: 165 YSLVSKARLAV 175 >gi|327467114|gb|EGF12624.1| hypothetical protein HMPREF9386_2224 [Streptococcus sanguinis SK330] Length = 177 Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 66/131 (50%), Gaps = 15/131 (11%) Query: 50 NLLLQIFVERDDGNMTLRDCEELSQAISPILD--VENIIEGHYRLEVSSPGIDRPMVRKS 107 + +L +FV++ +G +T+ D +L+ ISP+LD + Y LEV+SPG++RP+ K Sbjct: 54 DYVLSVFVDKPEG-ITVNDTADLTDIISPLLDQIKPDPFPEQYFLEVTSPGLERPLKTKE 112 Query: 108 DFLRWNGHVVACEIVLSSGDKQKLI-GKIMGTSETGF---FLEKEKRGEKDMNELQIAIS 163 G + + + DKQK+ G ++ E +L+K +R E + I Sbjct: 113 QLADTVGSYIHVSL-YKAVDKQKVFEGTLLSFEEDVLHMEYLDKTRRKE-------VEIP 164 Query: 164 FDSLLSARLIV 174 + + ARL V Sbjct: 165 YSLVSKARLAV 175 >gi|125718694|ref|YP_001035827.1| hypothetical protein SSA_1901 [Streptococcus sanguinis SK36] gi|259595394|sp|A3CQ22|RIMP_STRSV RecName: Full=Ribosome maturation factor rimP gi|125498611|gb|ABN45277.1| Conserved uncharacterized protein [Streptococcus sanguinis SK36] gi|325688732|gb|EGD30741.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK115] gi|332364629|gb|EGJ42398.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK1059] Length = 177 Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 66/131 (50%), Gaps = 15/131 (11%) Query: 50 NLLLQIFVERDDGNMTLRDCEELSQAISPILD--VENIIEGHYRLEVSSPGIDRPMVRKS 107 + +L +FV++ +G +T+ D +L+ ISP+LD + Y LEV+SPG++RP+ K Sbjct: 54 DYVLSVFVDKPEG-ITVNDTADLTDIISPLLDQIKPDPFPEQYFLEVTSPGLERPLKTKE 112 Query: 108 DFLRWNGHVVACEIVLSSGDKQKLI-GKIMGTSETGF---FLEKEKRGEKDMNELQIAIS 163 G + + + DKQK+ G ++ E +L+K +R E + I Sbjct: 113 QLADAVGSYIHVSL-YKAVDKQKVFEGTLLSFEEDVLHMEYLDKTRRKE-------VEIP 164 Query: 164 FDSLLSARLIV 174 + + ARL V Sbjct: 165 YSLVSKARLAV 175 >gi|329115931|ref|ZP_08244648.1| hypothetical protein SPB_1207 [Streptococcus parauberis NCFD 2020] gi|326906336|gb|EGE53250.1| hypothetical protein SPB_1207 [Streptococcus parauberis NCFD 2020] Length = 160 Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 15/131 (11%) Query: 50 NLLLQIFVERDDGNMTLRDCEELSQAISPILD--VENIIEGHYRLEVSSPGIDRPMVRKS 107 + +L I +++D G +T+ D L++ ISP+LD + Y LEVSSPG++RP+ Sbjct: 37 DYVLSILIDKD-GGITVEDTTALTEIISPVLDQITPDPFPEQYMLEVSSPGLERPLKTAE 95 Query: 108 DFLRWNGHVVACEIVLSSGDKQKLI-GKIM---GTSETGFFLEKEKRGEKDMNELQIAIS 163 G + + + DK K+ G ++ G + T +LEK ++ + I Sbjct: 96 SITNAVGSYINVSL-YKAIDKIKVFQGDLVAFDGQTLTINYLEKNRQK-------TVEIP 147 Query: 164 FDSLLSARLIV 174 + S+ ARL V Sbjct: 148 YQSVAKARLAV 158 >gi|320547938|ref|ZP_08042221.1| protein of hypothetical function DUF150 [Streptococcus equinus ATCC 9812] gi|320447478|gb|EFW88238.1| protein of hypothetical function DUF150 [Streptococcus equinus ATCC 9812] Length = 150 Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 79/157 (50%), Gaps = 17/157 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 ++ V+ P I+E F V + + + +L I +++ G +T+ D +L++ ISP+LD Sbjct: 2 VTEVVAPAIKE-PFELVDVEYGKMGSDYVLSILIDKP-GGITVNDTADLTEIISPLLDAI 59 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI-GKIM---G 137 + Y LEVSSPG++RP+ K + G V + + DK K+ G ++ G Sbjct: 60 KPDPFPEQYMLEVSSPGLERPLKTKEALEKAVGSYVNVSL-YKAIDKVKVFQGDLVAFDG 118 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + T +L+K ++ + I + ++ ARL V Sbjct: 119 ETLTIDYLDKTRKK-------TVEIPYSTVAKARLAV 148 >gi|218296561|ref|ZP_03497289.1| protein of unknown function DUF150 [Thermus aquaticus Y51MC23] gi|218243103|gb|EED09635.1| protein of unknown function DUF150 [Thermus aquaticus Y51MC23] Length = 141 Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 2/91 (2%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 D+ +++ +E + +++ E +L +D+ +T+ D E S+ I +LD E Sbjct: 2 DLWQLVEEAVEPLDLEVLEVK--EAPGEVLVRLERKDEKPITVADLERASRHIEAVLDRE 59 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNG 114 + I G YRL V SPG RP+ + F R+ G Sbjct: 60 DPIPGSYRLLVESPGPKRPLFTRRHFERFQG 90 >gi|257055489|ref|YP_003133321.1| hypothetical protein Svir_14540 [Saccharomonospora viridis DSM 43017] gi|256585361|gb|ACU96494.1| uncharacterized conserved protein [Saccharomonospora viridis DSM 43017] Length = 179 Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 45/70 (64%), Gaps = 2/70 (2%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDV-ENIIEGHYRLEVSSPGIDRPMVRKS 107 + L+++ V+ D+G + L E+S+A+S +LD +++I G Y LEV+SPG+DRP+ + Sbjct: 34 RRKLVKVVVDGDEG-VELDKVAEISRAVSAVLDQHDHLIAGAYTLEVTSPGLDRPLTKPR 92 Query: 108 DFLRWNGHVV 117 + R +V Sbjct: 93 HWRRSRNRLV 102 >gi|91788289|ref|YP_549241.1| hypothetical protein Bpro_2424 [Polaromonas sp. JS666] gi|123164890|sp|Q12AU9|RIMP_POLSJ RecName: Full=Ribosome maturation factor rimP gi|91697514|gb|ABE44343.1| protein of unknown function DUF150 [Polaromonas sp. JS666] Length = 200 Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 35/50 (70%), Gaps = 2/50 (4%) Query: 68 DCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 DCE++++ + +L+VE + RLEVSSPGIDRP+ + DF R+ G +V Sbjct: 49 DCEKVTRQLQFVLEVEGA--DYSRLEVSSPGIDRPLRNEKDFERFAGELV 96 >gi|21911035|ref|NP_665303.1| hypothetical protein SpyM3_1499 [Streptococcus pyogenes MGAS315] gi|34223120|sp|Q8K642|RIMP_STRP3 RecName: Full=Ribosome maturation factor rimP gi|21905244|gb|AAM80106.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315] Length = 178 Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 42/64 (65%), Gaps = 4/64 (6%) Query: 50 NLLLQIFVERDDGNMTLRDCEELSQAISPILDV--ENIIEGHYRLEVSSPGIDRPMVRKS 107 + +L I V+++DG +T+ D +L+ ISP+LD + Y LEVSSPG++RP+ + + Sbjct: 55 DYILSILVDKEDG-ITVEDTSDLTNIISPLLDTIDPDPFPNQYMLEVSSPGLERPL-KTA 112 Query: 108 DFLR 111 D L+ Sbjct: 113 DSLK 116 >gi|308176798|ref|YP_003916204.1| hypothetical protein AARI_10150 [Arthrobacter arilaitensis Re117] gi|307744261|emb|CBT75233.1| conserved hypothetical protein [Arthrobacter arilaitensis Re117] Length = 188 Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 67/130 (51%), Gaps = 18/130 (13%) Query: 32 VIEEMSFRSVQISLLEEKNLLLQIFVERDDGN--MTLRDCEELSQAISPILDVENIIE-- 87 ++EE+S R K +++QI V++ DG+ + L + E++ IS LD + + Sbjct: 29 LLEEVSLRP------SGKQMIVQIIVDKADGHESLNLDELGEVTTTISNALDKDAVYASA 82 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFL-- 145 Y LEVSSPG+ RP+ + ++R +V +S D KL G+++ +++ + Sbjct: 83 APYELEVSSPGLSRPLTAQRHWIRAINRMVK----ISLADGTKLRGRLLEVNDSDVLVAE 138 Query: 146 --EKEKRGEK 153 E K+G K Sbjct: 139 HREPAKKGMK 148 >gi|225874865|ref|YP_002756324.1| hypothetical protein ACP_3325 [Acidobacterium capsulatum ATCC 51196] gi|259585657|sp|C1F695|RIMP_ACIC5 RecName: Full=Ribosome maturation factor rimP gi|225792684|gb|ACO32774.1| conserved hypothetical protein [Acidobacterium capsulatum ATCC 51196] Length = 201 Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 2/76 (2%) Query: 64 MTLRDCEELSQAISPILDVENIIEG--HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 +T DC S +LDVE ++ G Y LEVSSPG+DR + ++D+ R+ G +V Sbjct: 81 VTHEDCSAFSTDFGTLLDVEELMPGASEYTLEVSSPGLDRKLQSRADYERFAGSLVKLST 140 Query: 122 VLSSGDKQKLIGKIMG 137 + G++ G Sbjct: 141 FEPVNGNRHWQGRMAG 156 >gi|208434347|ref|YP_002266013.1| hypothetical protein HPG27_382 [Helicobacter pylori G27] gi|208432276|gb|ACI27147.1| hypothetical protein HPG27_382 [Helicobacter pylori G27] Length = 135 Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 51/79 (64%), Gaps = 1/79 (1%) Query: 32 VIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHY 90 +IE + + +SL++E + +L++ ++ +G ++L C+++S+ ISP+LDV + I+ Y Sbjct: 1 MIESLGYLLYDVSLVKENEQHILRVSLKNPNGAVSLDICQQVSEIISPLLDVCDFIQDAY 60 Query: 91 RLEVSSPGIDRPMVRKSDF 109 LEVSS G++R + F Sbjct: 61 ILEVSSMGLERTLKTPKHF 79 >gi|295098917|emb|CBK88006.1| Uncharacterized protein conserved in bacteria [Eubacterium cylindroides T2-87] Length = 154 Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 1/76 (1%) Query: 29 IQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 I+PV+ E I L +N +LQI VE+ DG M L C S I +LD ++ Sbjct: 10 IEPVLNEKDCVLYDIEWLTNQNPPILQISVEKQDGTMDLDTCAMCSDVIGTLLDNKDWYT 69 Query: 88 GHYRLEVSSPGIDRPM 103 Y LEV SPG +R + Sbjct: 70 KEYMLEVCSPGAEREL 85 >gi|306832817|ref|ZP_07465952.1| protein of hypothetical function DUF150 [Streptococcus bovis ATCC 700338] gi|304425052|gb|EFM28183.1| protein of hypothetical function DUF150 [Streptococcus bovis ATCC 700338] Length = 146 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 68/131 (51%), Gaps = 15/131 (11%) Query: 50 NLLLQIFVERDDGNMTLRDCEELSQAISPILDV--ENIIEGHYRLEVSSPGIDRPMVRKS 107 + +L I +++ +G +T+ D EL++ ISP+LD + Y LEVSSPG++RP+ K Sbjct: 23 DYVLSILIDKPEG-ITVDDTAELTEIISPLLDAIKPDPFPEQYMLEVSSPGLERPLKTKE 81 Query: 108 DFLRWNGHVVACEIVLSSGDKQKLI-GKIM---GTSETGFFLEKEKRGEKDMNELQIAIS 163 + G V + + DK K+ G ++ G + T +L+K ++ + I Sbjct: 82 ALEKAVGSYVNVSL-YKAIDKVKVFQGDLVAFDGDTLTIDYLDKTRKK-------TVEIP 133 Query: 164 FDSLLSARLIV 174 + ++ ARL V Sbjct: 134 YSTVAKARLAV 144 >gi|259046784|ref|ZP_05737185.1| BCR/YhbC family protein [Granulicatella adiacens ATCC 49175] gi|259036552|gb|EEW37807.1| BCR/YhbC family protein [Granulicatella adiacens ATCC 49175] Length = 167 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 4/82 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ + + VI++ F + ++E KN L+ ++++ G + L DC +S+ S ILD + Sbjct: 18 VTELTRDVIQKEGFELFDLEFVKEGKNWFLRFYLDKP-GGIDLDDCAFMSEKFSEILDAQ 76 Query: 84 N--IIEGHYRLEVSSPGIDRPM 103 N I Y LEVSSPG +RP+ Sbjct: 77 NPDPIPQAYFLEVSSPGAERPL 98 >gi|28895280|ref|NP_801630.1| hypothetical protein SPs0368 [Streptococcus pyogenes SSI-1] gi|28810526|dbj|BAC63463.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1] Length = 127 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 42/64 (65%), Gaps = 4/64 (6%) Query: 50 NLLLQIFVERDDGNMTLRDCEELSQAISPILDV--ENIIEGHYRLEVSSPGIDRPMVRKS 107 + +L I V+++DG +T+ D +L+ ISP+LD + Y LEVSSPG++RP+ + + Sbjct: 4 DYILSILVDKEDG-ITVEDTSDLTNIISPLLDTIDPDPFPNQYMLEVSSPGLERPL-KTA 61 Query: 108 DFLR 111 D L+ Sbjct: 62 DSLK 65 >gi|324991724|gb|EGC23656.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK353] Length = 177 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 9/128 (7%) Query: 50 NLLLQIFVERDDGNMTLRDCEELSQAISPILD--VENIIEGHYRLEVSSPGIDRPMVRKS 107 + +L +FV++ +G +T+ D +L+ ISP+LD + Y LEV+SPG++RP+ K Sbjct: 54 DYVLSVFVDKPEG-ITVNDTADLTDIISPLLDQIKPDPFPEQYFLEVTSPGLERPLKTKE 112 Query: 108 DFLRWNGHVVACEIVLSSGDKQKLI-GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDS 166 G + + + DKQK+ G ++ E +E + K E++I S S Sbjct: 113 QLADAVGSYIHVSL-YKAVDKQKVFEGTLLSFEEDVLHMEYLDKTRK--KEVEIPYSLVS 169 Query: 167 LLSARLIV 174 ARL V Sbjct: 170 --KARLAV 175 >gi|189485236|ref|YP_001956177.1| hypothetical protein TGRD_233 [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|259645130|sp|B1GZN4|RIMP_UNCTG RecName: Full=Ribosome maturation factor rimP gi|170287195|dbj|BAG13716.1| conserved hypothetical protein [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 151 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 4/121 (3%) Query: 19 MGLAGDISSVIQPVI--EEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAI 76 M +I ++ PV E++ VQ S + + + +IF+++D G +T+ DCE +S Sbjct: 1 MRKVQEIEDLLAPVAAREKIEIVDVQYSK-KAGDWVARIFIDKDSG-VTISDCENISCIF 58 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 LD +I++ Y LE+SSPG R + + F R+ G +++ +G ++ Sbjct: 59 GAFLDESDILKDSYVLEISSPGFKRVLKSEKSFRRFIGSKTRIRTFKPINNQRNFLGTLL 118 Query: 137 G 137 Sbjct: 119 N 119 >gi|325695171|gb|EGD37072.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK150] gi|328944977|gb|EGG39134.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK1087] gi|332358011|gb|EGJ35844.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK1056] Length = 177 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 66/131 (50%), Gaps = 15/131 (11%) Query: 50 NLLLQIFVERDDGNMTLRDCEELSQAISPILD--VENIIEGHYRLEVSSPGIDRPMVRKS 107 + +L +FV++ +G +T+ D +L+ ISP+LD + Y LEV+SPG++RP+ K Sbjct: 54 DYVLSVFVDKPEG-ITVNDTADLTDIISPLLDQIKPDPFPEQYFLEVTSPGLERPLKTKE 112 Query: 108 DFLRWNGHVVACEIVLSSGDKQKLI-GKIMGTSETGF---FLEKEKRGEKDMNELQIAIS 163 G + + + DKQK+ G ++ E +L+K +R E + I Sbjct: 113 QLSDAVGSYIHVSL-YKAVDKQKVFEGTLLSFEEDVLHMEYLDKTRRKE-------VEIP 164 Query: 164 FDSLLSARLIV 174 + + ARL V Sbjct: 165 YSLVSKARLAV 175 >gi|259586215|sp|Q2S1N5|RIMP_SALRD RecName: Full=Ribosome maturation factor rimP Length = 155 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 1/75 (1%) Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+ I +LDVE++++G Y+LE+SSPGI RP+ + + + G + S GD++ + Sbjct: 59 ISKEIGFLLDVEDVVDGSYKLELSSPGIKRPLTMPAQYRKNVGRTLRVRFE-SDGDEEIV 117 Query: 132 IGKIMGTSETGFFLE 146 +G + + LE Sbjct: 118 VGDLTDADDEEIELE 132 >gi|32266338|ref|NP_860370.1| hypothetical protein HH0839 [Helicobacter hepaticus ATCC 51449] gi|34222773|sp|P59821|RIMP_HELHP RecName: Full=Ribosome maturation factor rimP gi|32262388|gb|AAP77436.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 157 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 40/59 (67%) Query: 64 MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV 122 ++L+DC+ +S+ ISP+LDVE+ Y LEVSSPG++R + + ++ G V+ +++ Sbjct: 56 VSLQDCQNVSELISPLLDVEDENLKDYNLEVSSPGLERVLKKPQHYIYSLGEKVSIKLM 114 >gi|223984471|ref|ZP_03634604.1| hypothetical protein HOLDEFILI_01898 [Holdemania filiformis DSM 12042] gi|223963542|gb|EEF67921.1| hypothetical protein HOLDEFILI_01898 [Holdemania filiformis DSM 12042] Length = 156 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 2/82 (2%) Query: 24 DISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 +I ++I PV++ + + + + E+K+ +LQI V R DG+M + C +S+ IS LD Sbjct: 6 NIKTLILPVLDSLGIQLYDLKWVNEKKSRILQIAVMRADGSMDIDTCALVSEKISEALDA 65 Query: 83 -ENIIEGHYRLEVSSPGIDRPM 103 ++ I Y LEV SPG +R + Sbjct: 66 HDDWISFEYFLEVCSPGAEREL 87 >gi|332522698|ref|ZP_08398950.1| hypothetical protein STRPO_1027 [Streptococcus porcinus str. Jelinkova 176] gi|332313962|gb|EGJ26947.1| hypothetical protein STRPO_1027 [Streptococcus porcinus str. Jelinkova 176] Length = 176 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 21/159 (13%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK---NLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 ++ + PVI+ F V + EK + +L I V+++ G +T+ D EL++ ISP+LD Sbjct: 28 VTETVSPVIKS-PFELVDVEY--EKMGSDYILSILVDKE-GGITVEDTTELTEIISPLLD 83 Query: 82 --VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI-GKIM-- 136 + Y LEVSSPG++RP+ K + G V + + DK K+ G ++ Sbjct: 84 QISPDPFPDQYMLEVSSPGLERPLKTKEAIEKAVGSYVNVSL-YKAIDKVKVFQGDLISF 142 Query: 137 -GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G + T +L+K + D I + ++ ARL V Sbjct: 143 DGKTLTIDYLDKTRHKVVD-------IPYQTVAKARLAV 174 >gi|259585710|sp|A1W8Z6|RIMP_ACISJ RecName: Full=Ribosome maturation factor rimP Length = 197 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 38/54 (70%), Gaps = 2/54 (3%) Query: 64 MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 +T+ DCE++++ + L+VE + + RLEVSSPGIDR + ++DF R+ G V+ Sbjct: 54 ITVEDCEKVTRQLQFALEVEGV--DYTRLEVSSPGIDRLLRNEADFKRFEGEVI 105 >gi|222110448|ref|YP_002552712.1| hypothetical protein Dtpsy_1245 [Acidovorax ebreus TPSY] gi|254800004|sp|B9MGN9|RIMP_DIAST RecName: Full=Ribosome maturation factor rimP gi|221729892|gb|ACM32712.1| protein of unknown function DUF150 [Acidovorax ebreus TPSY] Length = 197 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 38/54 (70%), Gaps = 2/54 (3%) Query: 64 MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 +T+ DCE++++ + L+VE + + RLEVSSPGIDR + ++DF R+ G V+ Sbjct: 54 ITVEDCEKVTRQLQFALEVEGV--DYTRLEVSSPGIDRLLRNEADFKRFEGEVI 105 >gi|228476573|ref|ZP_04061255.1| conserved hypothetical protein [Streptococcus salivarius SK126] gi|228251768|gb|EEK10833.1| conserved hypothetical protein [Streptococcus salivarius SK126] Length = 157 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 78/159 (49%), Gaps = 21/159 (13%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK---NLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 +++V+ P I E + V I EK + +L + +++ G +T+ D +L++ ISP+LD Sbjct: 9 VTAVVAPAIPE-PYELVDIEY--EKLGGDYVLSVLIDKP-GGITVEDTADLTEIISPLLD 64 Query: 82 V--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI-GKIM-- 136 + Y LEVSSPG++RP+ K G + + + DK K+ G ++ Sbjct: 65 TIQPDPFPDQYMLEVSSPGLERPLKTKEALTNAVGQYINVSL-YKAIDKIKIFQGDLVAF 123 Query: 137 -GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G + T +L+K + + I + ++ ARL V Sbjct: 124 DGETLTIDYLDKTRHK-------TVEIPYQTVAKARLAV 155 >gi|119963357|ref|YP_947325.1| uncharacterized Bcr YhbC family protein [Arthrobacter aurescens TC1] gi|259585697|sp|A1R513|RIMP_ARTAT RecName: Full=Ribosome maturation factor rimP gi|119950216|gb|ABM09127.1| putative Uncharacterized BCR YhbC family protein [Arthrobacter aurescens TC1] Length = 203 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 8/115 (6%) Query: 62 GNMTLRDCEELSQAISPILDVENIIEGH-YRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 G ++L ++S+ +S ILD + +G Y LEVSSPG+ RP+ + R G +V Sbjct: 70 GGVSLDAIADVSRGLSDILDNDPHDDGRPYDLEVSSPGVSRPLTEPRHWHRARGRMVRVN 129 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQ---IAISFDSLLSARL 172 ++ GD L+G+I + L E +K M Q I I FD + ++ Sbjct: 130 VI--QGD--NLLGRIASVGDDAVTLIPEHEVKKGMKPKQGEPITIPFDRIRQGKV 180 >gi|28378677|ref|NP_785569.1| hypothetical protein lp_2044 [Lactobacillus plantarum WCFS1] gi|254556875|ref|YP_003063292.1| hypothetical protein JDM1_1708 [Lactobacillus plantarum JDM1] gi|300768188|ref|ZP_07078093.1| protein of hypothetical function DUF150 [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180816|ref|YP_003924944.1| hypothetical protein LPST_C1634 [Lactobacillus plantarum subsp. plantarum ST-III] gi|34223110|sp|Q88VK3|RIMP_LACPL RecName: Full=Ribosome maturation factor rimP gi|28271513|emb|CAD64418.1| unknown [Lactobacillus plantarum WCFS1] gi|254045802|gb|ACT62595.1| conserved hypothetical protein [Lactobacillus plantarum JDM1] gi|300494252|gb|EFK29415.1| protein of hypothetical function DUF150 [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046307|gb|ADN98850.1| hypothetical protein LPST_C1634 [Lactobacillus plantarum subsp. plantarum ST-III] Length = 158 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 23/157 (14%) Query: 21 LAGDISSVIQPV----IEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQA 75 ++ ++ IQPV + F V + + E ++ L++++++ G + + +C +S Sbjct: 1 MSSNVVETIQPVAAAIVSAHQFELVDLEFVREGQSWYLRLYIDKP-GGINIEECAMVSDE 59 Query: 76 ISPILDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 +S LD + I Y LEVSSPG +RP+ +++DF G V G QKL G Sbjct: 60 LSEKLDAMEPDPIPQAYFLEVSSPGAERPLKKEADFQNAIGKYVHV------GLYQKLDG 113 Query: 134 K---------IMGTSETGFFLEKEKRGEKDMNELQIA 161 K + T+ T +L+K + +N QI+ Sbjct: 114 KKIFEGDLTAVTPTTLTIDYLDKTRHKTVTINREQIS 150 >gi|206602207|gb|EDZ38689.1| Conserved protein of unknown function [Leptospirillum sp. Group II '5-way CG'] Length = 167 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 5/120 (4%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 + ++FV+ G + L E +S+ IS +LDV + G YRLEVSSPG+DR + D L Sbjct: 30 VFKVFVDHPKG-VGLDQLEAVSRRISDLLDVLDPFPGKYRLEVSSPGLDRVLRIPEDLLL 88 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 G + + Q++ +G+ E G L G+K +L+ +I D + R Sbjct: 89 HVGKHIKVK-TKEPLQGQRVFRGTIGSLEAGVLLISSVEGKK---QLKHSIPLDLVAEVR 144 >gi|326382938|ref|ZP_08204628.1| ribosome maturation protein RimP [Gordonia neofelifaecis NRRL B-59395] gi|326198528|gb|EGD55712.1| ribosome maturation protein RimP [Gordonia neofelifaecis NRRL B-59395] Length = 181 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 3/103 (2%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQAISP 78 L GDI V+ + E + ++++L ++I V+RD G +L +LS+A+ Sbjct: 5 ALTGDIGDVLTAPLAEHGYDLEEVAILTPPGRREIRIVVDRD-GGASLDALADLSRALES 63 Query: 79 ILDVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 +LD +++ E Y LE+++PGI RP+ + R G V E Sbjct: 64 VLDDSDLLGESPYDLELTTPGIGRPLTLPRHWRRSQGRKVTAE 106 >gi|149925032|ref|ZP_01913350.1| hypothetical protein PPSIR1_10025 [Plesiocystis pacifica SIR-1] gi|149814096|gb|EDM73722.1| hypothetical protein PPSIR1_10025 [Plesiocystis pacifica SIR-1] Length = 174 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/146 (23%), Positives = 67/146 (45%), Gaps = 20/146 (13%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILD-- 81 + + I+PV +M + ++ I + +L++F++ G +T+ DC + + I LD Sbjct: 1 MEAAIEPVCADMGYEALLIEWSGSGQRRVLRVFLDSPKG-VTIADCTRMGRLIGNSLDAA 59 Query: 82 ------------VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI----VLSS 125 + ++ Y LEVSSPG+DRP+ +K F G V + + Sbjct: 60 EAAVEAGEGNPALAALLAPGYTLEVSSPGVDRPLAKKRHFTAQVGGRVKLKTWESPAAAD 119 Query: 126 GDKQKLIGKIMGTSETGFFLEKEKRG 151 D++ G+++ + E ++RG Sbjct: 120 ADERSFNGRLVAVHDDDAAPEDQRRG 145 >gi|322373935|ref|ZP_08048470.1| SP14.3 protein [Streptococcus sp. C150] gi|321277307|gb|EFX54377.1| SP14.3 protein [Streptococcus sp. C150] Length = 157 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 78/159 (49%), Gaps = 21/159 (13%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK---NLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 +++V+ P I E + V I EK + +L + +++ G +T+ D +L++ ISP+LD Sbjct: 9 VTAVVAPAIPE-PYELVDIEY--EKLGSDYVLSVLIDKP-GGITVEDTADLTEIISPLLD 64 Query: 82 V--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI-GKIM-- 136 + Y LEVSSPG++RP+ K G + + + DK K+ G ++ Sbjct: 65 TIQPDPFPDQYMLEVSSPGLERPLKTKEALTNAVGQYINVSL-YKAIDKIKIFQGDLVAF 123 Query: 137 -GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G + T +L+K + + I + ++ ARL V Sbjct: 124 DGETLTIDYLDKTRHK-------TVEIPYQTVAKARLAV 155 >gi|319762632|ref|YP_004126569.1| hypothetical protein Alide_1938 [Alicycliphilus denitrificans BC] gi|330824722|ref|YP_004388025.1| ribosome maturation factor rimP [Alicycliphilus denitrificans K601] gi|317117193|gb|ADU99681.1| protein of unknown function DUF150 [Alicycliphilus denitrificans BC] gi|329310094|gb|AEB84509.1| Ribosome maturation factor rimP [Alicycliphilus denitrificans K601] Length = 196 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 37/54 (68%), Gaps = 2/54 (3%) Query: 64 MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 +T+ DCE++++ + L+VE + + RLEVSSPGIDR + + DF R+ G V+ Sbjct: 53 VTVEDCEKVTRQLQFALEVEGV--DYKRLEVSSPGIDRLLRNEQDFTRFEGEVI 104 >gi|291519297|emb|CBK74518.1| Uncharacterized protein conserved in bacteria [Butyrivibrio fibrisolvens 16/4] Length = 100 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 59/107 (55%), Gaps = 15/107 (14%) Query: 8 HSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTL 66 H+ YE R +I P+++E+ F + ++E + L+ +++++ G +T+ Sbjct: 4 HTDYEKRT----------EELITPILDELGFELYDVEYVKEGADYYLRAYIDKE-GGITI 52 Query: 67 RDCEELSQAISPILDVENIIEGH--YRLEVSSPGIDRPMVRKSDFLR 111 DC ++S ++ +LD E I G Y EVSSPG+ R +++K+ L+ Sbjct: 53 DDCVDVSHRMNELLDAEPQIGGDEGYIFEVSSPGLGR-ILKKTSILK 98 >gi|206895232|ref|YP_002247277.1| protein of unknown function, putative [Coprothermobacter proteolyticus DSM 5265] gi|259585743|sp|B5Y930|RIMP_COPPD RecName: Full=Ribosome maturation factor rimP gi|206737849|gb|ACI16927.1| protein of unknown function, putative [Coprothermobacter proteolyticus DSM 5265] Length = 169 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 9/151 (5%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 D+ I ++ F + + EK + V + ++T+ DCE+L++AI P+L+ Sbjct: 8 ADLEERISKIVVSKGFYFIDLEERMEKGAHIISVVVHGEPSVTIGDCEKLTRAILPLLES 67 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 + LEV+SPG+DR + R+ ++ + G V+ G Q + K++G Sbjct: 68 FPWYGDNDHLEVTSPGLDRVLKREWEYEIFKGRVIDISFD-RDGKSQTIRAKLVGRENEN 126 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 +E E I FD + A+L+ Sbjct: 127 VVIEYEGN--------YFRIPFDQVRKAKLV 149 >gi|291276415|ref|YP_003516187.1| hypothetical protein HMU01790 [Helicobacter mustelae 12198] gi|290963609|emb|CBG39441.1| Putative hypothetical protein [Helicobacter mustelae 12198] Length = 147 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 51/82 (62%), Gaps = 1/82 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 ++ ++ I+ +I+ + + I L+E ++ +L+I + D +TL C+ +S+A+SP+ Sbjct: 2 ISQELQERIENLIQSLGYTLYDIVFLKENQSDILRISITHADQPITLDACQMVSEALSPL 61 Query: 80 LDVENIIEGHYRLEVSSPGIDR 101 LDV + Y LEVSSPG++R Sbjct: 62 LDVALSDQKSYFLEVSSPGVER 83 >gi|332366409|gb|EGJ44160.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK355] Length = 177 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 67/126 (53%), Gaps = 13/126 (10%) Query: 50 NLLLQIFVERDDGNMTLRDCEELSQAISPILD--VENIIEGHYRLEVSSPGIDRPMVRKS 107 + +L +FV++ +G +T+ D +L+ ISP+LD + Y LEV+SPG++RP+ K Sbjct: 54 DYVLSVFVDKPEG-ITVNDTADLTDIISPLLDQIKPDPFPEQYFLEVTSPGLERPLKTKE 112 Query: 108 DFLRWNGHVVACEIVLSSGDKQKLI-GKIMGTSETGF---FLEKEKRGEKDM-----NEL 158 G + + + DKQK+ G ++ E +L+K +R E ++ ++ Sbjct: 113 QLADAVGSYIHVSL-YKAVDKQKVFEGTLLSFEEDVLRMEYLDKTRRKEVEILYSLVSKA 171 Query: 159 QIAISF 164 ++A+ F Sbjct: 172 RLAVKF 177 >gi|46198658|ref|YP_004325.1| putative cytoplasmic protein [Thermus thermophilus HB27] gi|55980671|ref|YP_143968.1| hypothetical protein TTHA0702 [Thermus thermophilus HB8] gi|51316688|sp|Q72KG3|RIMP_THET2 RecName: Full=Ribosome maturation factor rimP gi|62299029|sp|Q56425|RIMP_THET8 RecName: Full=Ribosome maturation factor rimP gi|46196281|gb|AAS80698.1| hypothetical cytosolic protein [Thermus thermophilus HB27] gi|55772084|dbj|BAD70525.1| conserved hypothetical protein [Thermus thermophilus HB8] Length = 157 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 33/56 (58%) Query: 59 RDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNG 114 +D+ +T+ D EE S+ I LD E+ I G YRL V SPG RP+ + F R+ G Sbjct: 51 KDERPITVADLEEASRHIEAALDREDPIPGSYRLLVESPGPKRPLFTRRHFERFQG 106 >gi|312862565|ref|ZP_07722807.1| conserved hypothetical protein [Streptococcus vestibularis F0396] gi|322517415|ref|ZP_08070288.1| protein of hypothetical function DUF150 [Streptococcus vestibularis ATCC 49124] gi|311101970|gb|EFQ60171.1| conserved hypothetical protein [Streptococcus vestibularis F0396] gi|322123897|gb|EFX95456.1| protein of hypothetical function DUF150 [Streptococcus vestibularis ATCC 49124] Length = 157 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 78/159 (49%), Gaps = 21/159 (13%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK---NLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 +++V+ P I E + V I EK + +L + +++ G +T+ D +L++ ISP+LD Sbjct: 9 VTAVVAPAIPE-PYELVDIEY--EKIGSDYILSVLIDKP-GGITVEDTADLTEIISPLLD 64 Query: 82 V--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI-GKIM-- 136 + Y LEVSSPG++RP+ K G + + + DK K+ G ++ Sbjct: 65 TIQPDPFPDQYMLEVSSPGLERPLKTKEALKNAVGQYINVSL-YKAIDKIKIFQGDLLTF 123 Query: 137 -GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G + T +L+K + + I + ++ ARL V Sbjct: 124 DGETLTIDYLDKTRHK-------TVEIPYQTVAKARLAV 155 >gi|294507806|ref|YP_003571864.1| hypothetical protein SRM_01991 [Salinibacter ruber M8] gi|294344134|emb|CBH24912.1| conserved hypothetical protein [Salinibacter ruber M8] Length = 160 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 1/79 (1%) Query: 68 DCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD 127 D +S+ + +LDVE++++G Y+LE+SSPGI RP+ + + + G + S GD Sbjct: 60 DLALISKEVGFLLDVEDVVDGSYKLELSSPGIKRPLTMPAQYRKNVGRTLRVRFE-SDGD 118 Query: 128 KQKLIGKIMGTSETGFFLE 146 ++ ++G + + LE Sbjct: 119 EEIVVGDLTDADDEEIELE 137 >gi|121594901|ref|YP_986797.1| hypothetical protein Ajs_2563 [Acidovorax sp. JS42] gi|120606981|gb|ABM42721.1| protein of unknown function DUF150 [Acidovorax sp. JS42] Length = 219 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 38/54 (70%), Gaps = 2/54 (3%) Query: 64 MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 +T+ DCE++++ + L+VE + + RLEVSSPGIDR + ++DF R+ G V+ Sbjct: 76 ITVEDCEKVTRQLQFALEVEGV--DYTRLEVSSPGIDRLLRNEADFKRFEGEVI 127 >gi|121604914|ref|YP_982243.1| hypothetical protein Pnap_2013 [Polaromonas naphthalenivorans CJ2] gi|226701127|sp|A1VNU4|RIMP_POLNA RecName: Full=Ribosome maturation factor rimP gi|120593883|gb|ABM37322.1| protein of unknown function DUF150 [Polaromonas naphthalenivorans CJ2] Length = 202 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 35/50 (70%), Gaps = 2/50 (4%) Query: 68 DCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 DCE++++ + +L+VE + RLEVSSPGIDRP+ + DF R+ G ++ Sbjct: 53 DCEKVTRQLQFVLEVEGA--EYSRLEVSSPGIDRPLRSEKDFERFAGELI 100 >gi|296129354|ref|YP_003636604.1| protein of unknown function DUF150 [Cellulomonas flavigena DSM 20109] gi|296021169|gb|ADG74405.1| protein of unknown function DUF150 [Cellulomonas flavigena DSM 20109] Length = 186 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/125 (23%), Positives = 58/125 (46%), Gaps = 10/125 (8%) Query: 56 FVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGH 115 + D G + L ++++A+S LD +++ G Y LEV SPG +RP+ + R G Sbjct: 45 LADDDPGTLDLDRVGDVTRAVSDALDAADVLPGAYTLEVGSPGAERPLTLARHWRRARGR 104 Query: 116 VVACEIVLSSGDKQKLIGKIMGTSETG------FFLEKEKRGEKDMNELQIAISFDSLLS 169 V ++ D L G++ G ++ + +G + + + +++D + Sbjct: 105 TV----LVRRTDGTTLTGRLDGVADGDAPELVVVPVTDPGKGRRPVVGAPVTLAWDDVRD 160 Query: 170 ARLIV 174 AR+ V Sbjct: 161 ARVQV 165 >gi|326333614|ref|ZP_08199852.1| hypothetical protein NBCG_05048 [Nocardioidaceae bacterium Broad-1] gi|325948595|gb|EGD40697.1| hypothetical protein NBCG_05048 [Nocardioidaceae bacterium Broad-1] Length = 166 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 54/99 (54%), Gaps = 6/99 (6%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII-EGHYRLEVSSPGIDRPMVRKS 107 K +L+I V++D G +T + E ++ ++ +LD +++ E Y LEV+SPG+DRP+ Sbjct: 44 KRRILRIAVDKD-GGITHEEVTEATREVNRVLDESDVMGEQPYTLEVTSPGVDRPLTLPR 102 Query: 108 DFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE 146 + R G +V +++ D G++ + E LE Sbjct: 103 HWRRNKGRLVK----VTATDGSTFTGRVKESDEDRVSLE 137 >gi|306968906|ref|ZP_07481567.1| hypothetical protein TMIG_02342 [Mycobacterium tuberculosis SUMu009] gi|308353519|gb|EFP42370.1| hypothetical protein TMIG_02342 [Mycobacterium tuberculosis SUMu009] Length = 183 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 4/56 (7%) Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD N I G Y LEVSSPG++RP+ + F R G V E+VLS G +L G++ Sbjct: 69 LDGANKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKV--ELVLSDG--SRLTGRV 120 >gi|15609979|ref|NP_217358.1| hypothetical protein Rv2842c [Mycobacterium tuberculosis H37Rv] gi|15842383|ref|NP_337420.1| hypothetical protein MT2908 [Mycobacterium tuberculosis CDC1551] gi|31794019|ref|NP_856512.1| hypothetical protein Mb2867c [Mycobacterium bovis AF2122/97] gi|121638722|ref|YP_978946.1| hypothetical protein BCG_2862c [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662683|ref|YP_001284206.1| hypothetical protein MRA_2865 [Mycobacterium tuberculosis H37Ra] gi|148824032|ref|YP_001288786.1| hypothetical protein TBFG_12857 [Mycobacterium tuberculosis F11] gi|167967195|ref|ZP_02549472.1| hypothetical protein MtubH3_03787 [Mycobacterium tuberculosis H37Ra] gi|215404814|ref|ZP_03416995.1| hypothetical protein Mtub0_14218 [Mycobacterium tuberculosis 02_1987] gi|215412674|ref|ZP_03421392.1| hypothetical protein Mtub9_14980 [Mycobacterium tuberculosis 94_M4241A] gi|215428281|ref|ZP_03426200.1| hypothetical protein MtubT9_18553 [Mycobacterium tuberculosis T92] gi|215431784|ref|ZP_03429703.1| hypothetical protein MtubE_14186 [Mycobacterium tuberculosis EAS054] gi|215447096|ref|ZP_03433848.1| hypothetical protein MtubT_14592 [Mycobacterium tuberculosis T85] gi|218754590|ref|ZP_03533386.1| hypothetical protein MtubG1_14629 [Mycobacterium tuberculosis GM 1503] gi|219558859|ref|ZP_03537935.1| hypothetical protein MtubT1_16742 [Mycobacterium tuberculosis T17] gi|224991214|ref|YP_002645903.1| hypothetical protein JTY_2857 [Mycobacterium bovis BCG str. Tokyo 172] gi|253798072|ref|YP_003031073.1| hypothetical protein TBMG_01130 [Mycobacterium tuberculosis KZN 1435] gi|254232937|ref|ZP_04926264.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|254365488|ref|ZP_04981533.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|254551906|ref|ZP_05142353.1| hypothetical protein Mtube_15842 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187858|ref|ZP_05765332.1| hypothetical protein MtubCP_17794 [Mycobacterium tuberculosis CPHL_A] gi|260201973|ref|ZP_05769464.1| hypothetical protein MtubT4_18245 [Mycobacterium tuberculosis T46] gi|260206153|ref|ZP_05773644.1| hypothetical protein MtubK8_17835 [Mycobacterium tuberculosis K85] gi|289444393|ref|ZP_06434137.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] gi|289448504|ref|ZP_06438248.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289553370|ref|ZP_06442580.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289571030|ref|ZP_06451257.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289575543|ref|ZP_06455770.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] gi|289746640|ref|ZP_06506018.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289751503|ref|ZP_06510881.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289754950|ref|ZP_06514328.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|289758962|ref|ZP_06518340.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|289763018|ref|ZP_06522396.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|294994067|ref|ZP_06799758.1| hypothetical protein Mtub2_06033 [Mycobacterium tuberculosis 210] gi|297635455|ref|ZP_06953235.1| hypothetical protein MtubK4_15097 [Mycobacterium tuberculosis KZN 4207] gi|297732454|ref|ZP_06961572.1| hypothetical protein MtubKR_15262 [Mycobacterium tuberculosis KZN R506] gi|298526310|ref|ZP_07013719.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|306777126|ref|ZP_07415463.1| hypothetical protein TMAG_01041 [Mycobacterium tuberculosis SUMu001] gi|306781032|ref|ZP_07419369.1| hypothetical protein TMBG_02983 [Mycobacterium tuberculosis SUMu002] gi|306785670|ref|ZP_07423992.1| hypothetical protein TMCG_02090 [Mycobacterium tuberculosis SUMu003] gi|306789710|ref|ZP_07428032.1| hypothetical protein TMDG_00030 [Mycobacterium tuberculosis SUMu004] gi|306794343|ref|ZP_07432645.1| hypothetical protein TMEG_03985 [Mycobacterium tuberculosis SUMu005] gi|306798767|ref|ZP_07437069.1| hypothetical protein TMFG_00036 [Mycobacterium tuberculosis SUMu006] gi|306804613|ref|ZP_07441281.1| hypothetical protein TMHG_02045 [Mycobacterium tuberculosis SUMu008] gi|306807353|ref|ZP_07444021.1| hypothetical protein TMGG_02026 [Mycobacterium tuberculosis SUMu007] gi|306973242|ref|ZP_07485903.1| hypothetical protein TMJG_01830 [Mycobacterium tuberculosis SUMu010] gi|307080951|ref|ZP_07490121.1| hypothetical protein TMKG_03274 [Mycobacterium tuberculosis SUMu011] gi|307085546|ref|ZP_07494659.1| hypothetical protein TMLG_01328 [Mycobacterium tuberculosis SUMu012] gi|313659786|ref|ZP_07816666.1| ribosome maturation protein RimP [Mycobacterium tuberculosis KZN V2475] gi|54040615|sp|P67215|RIMP_MYCBO RecName: Full=Ribosome maturation factor rimP gi|54042962|sp|P67214|RIMP_MYCTU RecName: Full=Ribosome maturation factor rimP gi|166988534|sp|A1KMI5|RIMP_MYCBP RecName: Full=Ribosome maturation factor rimP gi|166988535|sp|A5U6J4|RIMP_MYCTA RecName: Full=Ribosome maturation factor rimP gi|254801565|sp|C1AFV6|RIMP_MYCBT RecName: Full=Ribosome maturation factor rimP gi|2078017|emb|CAB08448.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv] gi|13882682|gb|AAK47234.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551] gi|31619613|emb|CAD95052.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97] gi|121494370|emb|CAL72851.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124601996|gb|EAY61006.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|134151001|gb|EBA43046.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|148506835|gb|ABQ74644.1| hypothetical protein MRA_2865 [Mycobacterium tuberculosis H37Ra] gi|148722559|gb|ABR07184.1| conserved hypothetical protein [Mycobacterium tuberculosis F11] gi|224774329|dbj|BAH27135.1| hypothetical protein JTY_2857 [Mycobacterium bovis BCG str. Tokyo 172] gi|253319575|gb|ACT24178.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 1435] gi|289417312|gb|EFD14552.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] gi|289421462|gb|EFD18663.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289438002|gb|EFD20495.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289539974|gb|EFD44552.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] gi|289544784|gb|EFD48432.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289687168|gb|EFD54656.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289692090|gb|EFD59519.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289695537|gb|EFD62966.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|289710524|gb|EFD74540.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|289714526|gb|EFD78538.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|298496104|gb|EFI31398.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308214495|gb|EFO73894.1| hypothetical protein TMAG_01041 [Mycobacterium tuberculosis SUMu001] gi|308326140|gb|EFP14991.1| hypothetical protein TMBG_02983 [Mycobacterium tuberculosis SUMu002] gi|308329670|gb|EFP18521.1| hypothetical protein TMCG_02090 [Mycobacterium tuberculosis SUMu003] gi|308333809|gb|EFP22660.1| hypothetical protein TMDG_00030 [Mycobacterium tuberculosis SUMu004] gi|308337335|gb|EFP26186.1| hypothetical protein TMEG_03985 [Mycobacterium tuberculosis SUMu005] gi|308340978|gb|EFP29829.1| hypothetical protein TMFG_00036 [Mycobacterium tuberculosis SUMu006] gi|308346276|gb|EFP35127.1| hypothetical protein TMGG_02026 [Mycobacterium tuberculosis SUMu007] gi|308348793|gb|EFP37644.1| hypothetical protein TMHG_02045 [Mycobacterium tuberculosis SUMu008] gi|308357360|gb|EFP46211.1| hypothetical protein TMJG_01830 [Mycobacterium tuberculosis SUMu010] gi|308361313|gb|EFP50164.1| hypothetical protein TMKG_03274 [Mycobacterium tuberculosis SUMu011] gi|308364914|gb|EFP53765.1| hypothetical protein TMLG_01328 [Mycobacterium tuberculosis SUMu012] gi|323718541|gb|EGB27711.1| hypothetical protein TMMG_03713 [Mycobacterium tuberculosis CDC1551A] gi|326904455|gb|EGE51388.1| hypothetical protein TBPG_02361 [Mycobacterium tuberculosis W-148] gi|328457845|gb|AEB03268.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 4207] Length = 183 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 4/56 (7%) Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD N I G Y LEVSSPG++RP+ + F R G V E+VLS G +L G++ Sbjct: 69 LDGANKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKV--ELVLSDG--SRLTGRV 120 >gi|222153584|ref|YP_002562761.1| hypothetical protein SUB1470 [Streptococcus uberis 0140J] gi|259645120|sp|B9DVC1|RIMP_STRU0 RecName: Full=Ribosome maturation factor rimP gi|222114397|emb|CAR43160.1| conserved hypothetical protein [Streptococcus uberis 0140J] Length = 158 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 77/156 (49%), Gaps = 19/156 (12%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV-- 82 +S VI+P E + ++ + +L +FV+++ G +++ D L++ ISP+LD Sbjct: 14 VSPVIEPPYELVDVEYEKMG----SDYILSVFVDKE-GGISVEDTVTLTELISPLLDAIH 68 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI-GKIM---GT 138 + Y LEVSSPG++RP+ + G V + + DK K+ G ++ G Sbjct: 69 PDPFPEQYMLEVSSPGLERPLKTPEALTKAIGSYVNVSL-YKAIDKVKVFQGDLVAFDGD 127 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + T +L+K ++ + I + ++ ARL V Sbjct: 128 TLTIHYLDKTRQK-------TVEIPYQTVAKARLAV 156 >gi|302335789|ref|YP_003800996.1| protein of unknown function DUF150 [Olsenella uli DSM 7084] gi|301319629|gb|ADK68116.1| protein of unknown function DUF150 [Olsenella uli DSM 7084] Length = 157 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 1/75 (1%) Query: 63 NMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV 122 ++L + S I+ +LD + I G Y LEVSSPG+ RP+ ++ DF R+ G V+ + Sbjct: 52 TISLDEVAAQSGWINEVLDDADPIAGSYVLEVSSPGLARPLRKERDFERFAGSDVSLKTF 111 Query: 123 LSSGDKQKLIGKIMG 137 G +++ G+++G Sbjct: 112 AREG-RRRFTGRLLG 125 >gi|264677929|ref|YP_003277836.1| hypothetical protein CtCNB1_1794 [Comamonas testosteroni CNB-2] gi|262208442|gb|ACY32540.1| hypothetical conserved protein [Comamonas testosteroni CNB-2] Length = 192 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 11/89 (12%) Query: 64 MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV----AC 119 +T+ DCE++++ + L+V+ + RLEVSSPGIDR + + DF+R+ G V Sbjct: 52 VTVEDCEKVTRQLQFALEVDGA--DYARLEVSSPGIDRLLRHEQDFIRFEGSEVDLTLKA 109 Query: 120 EIVLSSGDK-----QKLIGKIMGTSETGF 143 I + GDK +K G + T E G+ Sbjct: 110 PIGAAGGDKINANRKKFRGTLERTEEGGW 138 >gi|299530200|ref|ZP_07043626.1| hypothetical protein CTS44_05471 [Comamonas testosteroni S44] gi|298721857|gb|EFI62788.1| hypothetical protein CTS44_05471 [Comamonas testosteroni S44] Length = 182 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 11/89 (12%) Query: 64 MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV----AC 119 +T+ DCE++++ + L+V+ + RLEVSSPGIDR + + DF+R+ G V Sbjct: 42 VTVEDCEKVTRQLQFALEVDGA--DYARLEVSSPGIDRLLRHEQDFIRFEGSEVDLTLKA 99 Query: 120 EIVLSSGDK-----QKLIGKIMGTSETGF 143 I + GDK +K G + T E G+ Sbjct: 100 PIGAAGGDKINANRKKFRGTLERTEEGGW 128 >gi|116073741|ref|ZP_01471003.1| hypothetical protein RS9916_34862 [Synechococcus sp. RS9916] gi|116069046|gb|EAU74798.1| hypothetical protein RS9916_34862 [Synechococcus sp. RS9916] Length = 155 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 2/135 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDG-NMTLRDCEELSQAISP 78 L D++SV + F + L + + +Q+ + R G ++TL DC LS + Sbjct: 5 LLPDLTSVAAATAAQQGFELADLQLHTHLRPMTVQVQIRRPGGVDVTLDDCAGLSGPMGD 64 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 ++ +++ Y LE+SSPGI + DF + G V I G Q L G ++ Sbjct: 65 AIEASSLLTDAYVLEISSPGIGDLVQSDRDFQTFRGFPVEVTINEGDGPPQTLSGSLLDR 124 Query: 139 SETGFFLEKEKRGEK 153 S+ + + R +K Sbjct: 125 SDNHLEINMKGRIKK 139 >gi|221067738|ref|ZP_03543843.1| protein of unknown function DUF150 [Comamonas testosteroni KF-1] gi|220712761|gb|EED68129.1| protein of unknown function DUF150 [Comamonas testosteroni KF-1] Length = 192 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 11/89 (12%) Query: 64 MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV----AC 119 +T+ DCE++++ + L+V+ + RLEVSSPGIDR + + DF+R+ G V Sbjct: 52 VTVEDCEKVTRQLQFALEVDGA--DYARLEVSSPGIDRLLRHEQDFIRFEGSEVDLTLKA 109 Query: 120 EIVLSSGDK-----QKLIGKIMGTSETGF 143 I + GDK +K G + T E G+ Sbjct: 110 PIGAAGGDKINANRKKFRGTLERTEEGGW 138 >gi|83816343|ref|YP_445896.1| hypothetical protein SRU_1779 [Salinibacter ruber DSM 13855] gi|83757737|gb|ABC45850.1| Uncharacterized BCR, YhbC family COG0779 [Salinibacter ruber DSM 13855] Length = 217 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/127 (25%), Positives = 68/127 (53%), Gaps = 3/127 (2%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 LA +S + + VI + V + + K +++++++ ++ + D +S+ I + Sbjct: 70 LADRVSGLTEEVIVGTDYFLVDVEVRGHKGTRVVEVYIDSEE-EVGHDDLALISKEIGFL 128 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE++++G Y+LE+SSPGI RP+ + + + G + S GD++ ++G + Sbjct: 129 LDVEDVVDGSYKLELSSPGIKRPLTMPAQYRKNVGRTLRVRFE-SDGDEEIVVGDLTDAD 187 Query: 140 ETGFFLE 146 + LE Sbjct: 188 DEEIELE 194 >gi|296171599|ref|ZP_06852839.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894054|gb|EFG73816.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 175 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 4/75 (5%) Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 D + L LS++ S +LD + + Y LEVSSPG+DRP+ + F R G V + Sbjct: 47 DKALDLDTIATLSRSASALLDGLDDVGDRYVLEVSSPGVDRPLTSEKHFRRARGRKV--D 104 Query: 121 IVLSSGDKQKLIGKI 135 +VLS G +L G++ Sbjct: 105 VVLSDG--SRLTGRV 117 >gi|16329286|ref|NP_440014.1| hypothetical protein slr0742 [Synechocystis sp. PCC 6803] gi|1651766|dbj|BAA16694.1| slr0742 [Synechocystis sp. PCC 6803] Length = 176 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/108 (26%), Positives = 56/108 (51%), Gaps = 5/108 (4%) Query: 24 DISSVIQPVIEEMSFRSV-QISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 DI ++ QP+ E++ + ++ +L+I + + +L DCE S++ L+ Sbjct: 33 DILALAQPIAEDLGLEVTDAVFQTNKRPPVLRIDIRNLQQDTSLNDCEAFSRSFEAQLEE 92 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 ++I Y LEVSSPGI + + DF+ + G E+V++S + + Sbjct: 93 SSLIASAYVLEVSSPGISPYLATERDFIAFKGF----EVVVTSDNPHQ 136 >gi|323350355|ref|ZP_08086019.1| protein of hypothetical function DUF150 [Streptococcus sanguinis VMC66] gi|322123428|gb|EFX95104.1| protein of hypothetical function DUF150 [Streptococcus sanguinis VMC66] gi|327472755|gb|EGF18182.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK408] Length = 177 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 15/131 (11%) Query: 50 NLLLQIFVERDDGNMTLRDCEELSQAISPILD--VENIIEGHYRLEVSSPGIDRPMVRKS 107 + +L +FV++ +G +T+ D +L+ ISP+LD + Y LEV+SPG++RP+ K Sbjct: 54 DYVLSVFVDKPEG-ITVNDTADLTDIISPLLDQIKPDPFPEQYFLEVTSPGLERPLKTKE 112 Query: 108 DFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF----FLEKEKRGEKDMNELQIAIS 163 G + + + DKQK+ + + E +L+K +R E + I Sbjct: 113 QLADAVGSYIHVSL-YKAVDKQKVFEGTLLSFEGEVLHMEYLDKTRRKE-------VEIP 164 Query: 164 FDSLLSARLIV 174 + + ARL V Sbjct: 165 YSLVSKARLAV 175 >gi|325105521|ref|YP_004275175.1| protein of unknown function DUF150 [Pedobacter saltans DSM 12145] gi|324974369|gb|ADY53353.1| protein of unknown function DUF150 [Pedobacter saltans DSM 12145] Length = 153 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/128 (24%), Positives = 68/128 (53%), Gaps = 6/128 (4%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSD 108 +N + + ++ D+G +T+ DC ++S+ + L+ EN++ Y+LEV S G+D +V Sbjct: 29 QNKKITLLLDGDNG-ITIEDCAKVSRHVGYHLEEENLMTEAYQLEVGSAGLDAALVLDRQ 87 Query: 109 FLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKE-KRGEKDMNELQIAISFDSL 167 + + G +++ D K+ GK++G + T + E K K ++ I +++ Sbjct: 88 YQKNIGR----NLLVKKVDGSKIEGKLIGANPTNLVISHEVKEKGKKAQTVETVIEKENI 143 Query: 168 LSARLIVT 175 SA++ ++ Sbjct: 144 ASAKVSIS 151 >gi|312892422|ref|ZP_07751917.1| protein of unknown function DUF150 [Mucilaginibacter paludis DSM 18603] gi|311295206|gb|EFQ72380.1| protein of unknown function DUF150 [Mucilaginibacter paludis DSM 18603] Length = 161 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/108 (28%), Positives = 57/108 (52%), Gaps = 7/108 (6%) Query: 41 VQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGID 100 V + +L + L+ I V+ D G + + DC +S+ + L+ +N+IE Y LEVSSPGID Sbjct: 24 VDVKMLPNRKLI--ILVDGDAG-IGIADCAAISRFVGFKLEEDNVIEEAYNLEVSSPGID 80 Query: 101 RPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKE 148 P+ +R + ++ + D Q GK++ +E ++++ Sbjct: 81 SPLT----LIRQYTKNIGRDLSVKMTDGQLREGKLLSLAEDAIVIDEK 124 >gi|34223734|sp|P72687|RIMP_SYNY3 RecName: Full=Ribosome maturation factor rimP Length = 151 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 5/108 (4%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDV 82 DI ++ QP+ E++ K +L+I + + +L DCE S++ L+ Sbjct: 8 DILALAQPIAEDLGLEVTDAVFQTNKRPPVLRIDIRNLQQDTSLNDCEAFSRSFEAQLEE 67 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 ++I Y LEVSSPGI + + DF+ + G E+V++S + + Sbjct: 68 SSLIASAYVLEVSSPGISPYLATERDFIAFKGF----EVVVTSDNPHQ 111 >gi|300361903|ref|ZP_07058080.1| protein of hypothetical function DUF150 [Lactobacillus gasseri JV-V03] gi|300354522|gb|EFJ70393.1| protein of hypothetical function DUF150 [Lactobacillus gasseri JV-V03] Length = 172 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 13/156 (8%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 ++ V+ P+ E V + ++EK L+I+V+R G + + + LS+ +S LD Sbjct: 22 VADVVTPLAEARGDELVDVEYVKEKKQYYLRIYVDRRPGGIDIEEIANLSELVSEKLDEL 81 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + Y LE+SSPG++RP+ + D+ R G + + ++ G + ++ Sbjct: 82 DPDPFPEPYILELSSPGLERPIKNEKDWERAKGSYIHVSLYQKIDGEKTYEGTLKDLNQD 141 Query: 142 GFFLE---KEKRGEKDMNELQIAISFDSLLSARLIV 174 LE K +R E I I ++ S+R V Sbjct: 142 QIVLEVKIKTRRKE-------ITIPRKTIASSRFAV 170 >gi|325479429|gb|EGC82525.1| hypothetical protein HMPREF9290_1585 [Anaerococcus prevotii ACS-065-V-Col13] Length = 147 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 11/152 (7%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 M L + + + I E+ + V I K N +L F+ ++G +T+ DCE++S + Sbjct: 1 MDLTDRLREIFEADISELGYELVDIEYKGSKGNKILTFFIFNEEG-ITIDDCEKVSAFLD 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD ++I+ Y LEVSS + RP+ D R V+ ++ D + +GK+ Sbjct: 60 TRLDELDLIKDSYYLEVSSQDLSRPLKTDRDIERNINEVLKVKM----KDGEVFLGKVSD 115 Query: 138 TSETGFFLEKE-----KRGEKDMNELQIAISF 164 +E + + E + + D+ ++ I I F Sbjct: 116 INEDTYEFDLEDGTSRQVNKSDVKQINIEIVF 147 >gi|254423906|ref|ZP_05037624.1| conserved hypothetical protein [Synechococcus sp. PCC 7335] gi|196191395|gb|EDX86359.1| conserved hypothetical protein [Synechococcus sp. PCC 7335] Length = 154 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 41/88 (46%) Query: 66 LRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS 125 L DCE LS A++ LD N+I Y LEVSSPG+ + DF + G V + Sbjct: 52 LNDCERLSIALTEALDESNLIPDAYVLEVSSPGVSDVLSSDRDFKVFKGFPVEVRLSEPY 111 Query: 126 GDKQKLIGKIMGTSETGFFLEKEKRGEK 153 KQ G ++G + L + R K Sbjct: 112 KSKQIWRGSLIGRDDDKLTLNLKGRPVK 139 >gi|320449996|ref|YP_004202092.1| 15 kDa protein [Thermus scotoductus SA-01] gi|320150165|gb|ADW21543.1| 15 kDa protein [Thermus scotoductus SA-01] Length = 141 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 3/83 (3%) Query: 35 EMSFRSVQISLLEEKNLLLQIFVE---RDDGNMTLRDCEELSQAISPILDVENIIEGHYR 91 E + + + +LE K ++ V +D+ + + D E S+AI + D E+ I G YR Sbjct: 8 EEAVEPLDLEVLEVKEAPGEVLVRLERKDERPIRVADLERASRAIEAVFDQEDPIPGSYR 67 Query: 92 LEVSSPGIDRPMVRKSDFLRWNG 114 L V SPG RP+ + F R+ G Sbjct: 68 LLVESPGPKRPLFTRRHFERFQG 90 >gi|218887602|ref|YP_002436923.1| hypothetical protein DvMF_2516 [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|226701448|sp|B8DN15|RIMP_DESVM RecName: Full=Ribosome maturation factor rimP gi|218758556|gb|ACL09455.1| protein of unknown function DUF150 [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 226 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 3/114 (2%) Query: 63 NMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV 122 +T+ C LS+ + LDVE+++ Y LEVSSPG++RP + + + G + + Sbjct: 75 GVTIDQCARLSRQLGLALDVEDVVRDAYVLEVSSPGLERPFFEIAQVVPYVGRTIELTLA 134 Query: 123 LSSGD---KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + ++K I+ + D + I++++D + A LI Sbjct: 135 VPHPEWPGRRKFRADIVRVEGDTLTFLPDTAPRPDEDPAPISVAWDDVKKAHLI 188 >gi|312865482|ref|ZP_07725709.1| conserved hypothetical protein [Streptococcus downei F0415] gi|311099000|gb|EFQ57217.1| conserved hypothetical protein [Streptococcus downei F0415] Length = 134 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 66/131 (50%), Gaps = 15/131 (11%) Query: 50 NLLLQIFVERDDGNMTLRDCEELSQAISPILDV--ENIIEGHYRLEVSSPGIDRPMVRKS 107 + +L I V++ +G +T+ D EL+ ISP+LD + Y LE+SSPG++RP+ Sbjct: 11 DYVLSILVDKPEG-ITVDDTAELTDIISPLLDTIKPDPFPSQYMLEISSPGLERPLKTAE 69 Query: 108 DFLRWNGHVVACEIVLSSGDKQKLI-GKIM---GTSETGFFLEKEKRGEKDMNELQIAIS 163 G + + + DK K+ G ++ G + T +L+K ++ Q+ I Sbjct: 70 SLEAAIGSYINVSL-YKAIDKVKVFEGDLLDFDGQTLTLEYLDKTRKK-------QVEIP 121 Query: 164 FDSLLSARLIV 174 + ++ AR+ V Sbjct: 122 YSTVAKARMAV 132 >gi|171778094|ref|ZP_02919351.1| hypothetical protein STRINF_00186 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283076|gb|EDT48500.1| hypothetical protein STRINF_00186 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 146 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 67/131 (51%), Gaps = 15/131 (11%) Query: 50 NLLLQIFVERDDGNMTLRDCEELSQAISPILDV--ENIIEGHYRLEVSSPGIDRPMVRKS 107 + +L I +++ G +T+ D +L++ ISP+LD + Y LEVSSPG++RP+ K Sbjct: 23 DYVLSILIDKP-GGITVNDTADLTEIISPLLDAIKPDPFPEQYMLEVSSPGLERPLKTKE 81 Query: 108 DFLRWNGHVVACEIVLSSGDKQKLI-GKIM---GTSETGFFLEKEKRGEKDMNELQIAIS 163 + G V + + DK K+ G ++ G + T +L+K ++ + I Sbjct: 82 ALEKALGSYVNVSL-YKAIDKVKVFQGDLVAFDGETLTIDYLDKTRKK-------TVEIP 133 Query: 164 FDSLLSARLIV 174 + ++ ARL V Sbjct: 134 YSTVAKARLAV 144 >gi|331698437|ref|YP_004334676.1| ribosome maturation factor rimP [Pseudonocardia dioxanivorans CB1190] gi|326953126|gb|AEA26823.1| Ribosome maturation factor rimP [Pseudonocardia dioxanivorans CB1190] Length = 176 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 8/119 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDD--GNMTLRDCEELSQAIS 77 L + V++P++ F ++ + + +++ V+ D + L D LS+A S Sbjct: 7 LGRQLQDVLEPIVAGAGFELDELDVRATGRRHTVKVVVDSADEAAGVNLDDIARLSRAAS 66 Query: 78 PILDV-ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD E++I G Y LEV+SPGIDRP+ + + R ++ E+ L G KL G+I Sbjct: 67 AELDQHEHLIGGSYTLEVTSPGIDRPLTQPRHWRR--AYLRLVEVTLVEGG--KLAGRI 121 >gi|116627257|ref|YP_819876.1| hypothetical protein STER_0379 [Streptococcus thermophilus LMD-9] gi|122268140|sp|Q03M92|RIMP_STRTD RecName: Full=Ribosome maturation factor rimP gi|116100534|gb|ABJ65680.1| Uncharacterized protein conserved in bacteria [Streptococcus thermophilus LMD-9] gi|312277741|gb|ADQ62398.1| Ribosome maturation factor rimP [Streptococcus thermophilus ND03] Length = 157 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 21/159 (13%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK---NLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 +++V+ P I + + V I EK + +L + +++ G +T+ D +L++ ISP+LD Sbjct: 9 VTAVVAPAIPD-PYELVDIEY--EKIGSDYILSVLIDKP-GGITVEDTADLTEIISPLLD 64 Query: 82 V--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI-GKIM-- 136 + Y LEVSSPG++RP+ K G + + + DK K+ G ++ Sbjct: 65 TIQPDPFPDQYMLEVSSPGLERPLKTKEALKNAVGQYINVSL-YKAIDKIKIFQGDLLAF 123 Query: 137 -GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G + T +L+K + + I + ++ ARL V Sbjct: 124 DGETLTIDYLDKTRHK-------TVEIPYQTVAKARLAV 155 >gi|284044672|ref|YP_003395012.1| hypothetical protein Cwoe_3218 [Conexibacter woesei DSM 14684] gi|283948893|gb|ADB51637.1| protein of unknown function DUF150 [Conexibacter woesei DSM 14684] Length = 139 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 48/89 (53%), Gaps = 8/89 (8%) Query: 53 LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRW 112 +++F++ DG ++L CE ++ ++ I + Y LEVSSPG +RP+ + + F R+ Sbjct: 32 VRLFIDHPDG-VSLELCERVTHHLAGIRE-------RYGLEVSSPGSERPLTKPAHFRRY 83 Query: 113 NGHVVACEIVLSSGDKQKLIGKIMGTSET 141 G + G + G+++G +E+ Sbjct: 84 LGQRARVRTRGAHGGQGSFTGELVGANES 112 >gi|160947564|ref|ZP_02094731.1| hypothetical protein PEPMIC_01499 [Parvimonas micra ATCC 33270] gi|158446698|gb|EDP23693.1| hypothetical protein PEPMIC_01499 [Parvimonas micra ATCC 33270] Length = 154 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 1/87 (1%) Query: 47 EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRK 106 E K +L+IF+++D G + L CE S IS LD + IE Y LEVSSPG++R + Sbjct: 34 EPKGNVLRIFIDKD-GGVDLDSCEMTSNIISDWLDEVDPIEDSYFLEVSSPGVEREIKSD 92 Query: 107 SDFLRWNGHVVACEIVLSSGDKQKLIG 133 + G V + ++++ IG Sbjct: 93 EQLKTFIGKKVLVKCYKKINNEKEFIG 119 >gi|326771739|ref|ZP_08231024.1| YhbC family protein [Actinomyces viscosus C505] gi|326637872|gb|EGE38773.1| YhbC family protein [Actinomyces viscosus C505] Length = 172 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 59/110 (53%), Gaps = 6/110 (5%) Query: 10 KYEPRIFGDMGLAGDISSVIQPVIEE--MSFRSVQISLLEEKNLLLQIFVERDDG--NMT 65 + +PR D LA ++ ++ P++ + + SV+ + K ++++FV+ DG ++ Sbjct: 7 RKDPRQRAD-ALARSLTDLLAPIVNDAGLHLESVETTR-AGKYSVVRVFVDLVDGPGDLD 64 Query: 66 LRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGH 115 L ++ AIS LD + ++G Y LEVS+PG +R + F R GH Sbjct: 65 LDALGPVTAAISQALDEADPVKGQYTLEVSTPGAERELTTLRHFRRAVGH 114 >gi|117928725|ref|YP_873276.1| hypothetical protein Acel_1518 [Acidothermus cellulolyticus 11B] gi|259585656|sp|A0LV30|RIMP_ACIC1 RecName: Full=Ribosome maturation factor rimP gi|117649188|gb|ABK53290.1| protein of unknown function DUF150 [Acidothermus cellulolyticus 11B] Length = 170 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILD-- 81 ++ ++ PV+ ++LL+ + + L+I V++D G + L + SQAIS LD Sbjct: 10 LAELLAPVVAGQGLDLEGVTLLDHRTSAHLRIVVDKD-GGVQLDEIAAASQAISHFLDND 68 Query: 82 --VENIIEGH-YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 + II Y LEVSSPGIDRP+V + R G +V ++ Sbjct: 69 AEADAIIGPRSYTLEVSSPGIDRPLVEPRHWRRAIGRLVRVQL 111 >gi|325962804|ref|YP_004240710.1| hypothetical protein Asphe3_14020 [Arthrobacter phenanthrenivorans Sphe3] gi|323468891|gb|ADX72576.1| uncharacterized conserved protein [Arthrobacter phenanthrenivorans Sphe3] Length = 192 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 34/158 (21%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFV---ERDDGNMTLRDCEELSQAISP 78 A + ++++P ++ ++++ + ++ + V + + G + L ++S+ +S Sbjct: 16 AARLRALLEPAVQANRLYLEDVAIVAGSHRVVHVVVDLPQEETGGVGLDVIADISKVLSD 75 Query: 79 ILDVENIIEGH-YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LD + +G Y LEVSSPG+ RP+ + R G +V ++ GD + G+I Sbjct: 76 VLDNDPGDDGRPYDLEVSSPGVGRPLTEPRHWHRAKGRLVKVNVL--QGD--NVTGRIQA 131 Query: 138 TSETGFFLEKE---KRGEKDMNELQIAISFDSLLSARL 172 + G + E K+G K + + FD + + ++ Sbjct: 132 VDDAGVTIVPEIAVKKGMKPRQGDPVKLPFDRIRNGKV 169 >gi|300788186|ref|YP_003768477.1| hypothetical protein AMED_6341 [Amycolatopsis mediterranei U32] gi|299797700|gb|ADJ48075.1| conserved hypothetical protein [Amycolatopsis mediterranei U32] Length = 168 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 50/88 (56%), Gaps = 6/88 (6%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDV-ENIIEGHYRLEVSSPGIDRPMVRKS 107 + L+++ V+ DDG + L + E+S+ +S LD E+++ Y LEV+SPG+DRP+ + Sbjct: 22 RRQLVKVVVDSDDG-VGLDEIAEISRTVSATLDENEHVLASAYTLEVTSPGLDRPLTQPR 80 Query: 108 DFLRWNGHVVACEIVLSSGDKQKLIGKI 135 + R +V +S + +G++ Sbjct: 81 HWRRARFRLVK----ISPAEGAPFVGRV 104 >gi|325677900|ref|ZP_08157542.1| hypothetical protein CUS_7307 [Ruminococcus albus 8] gi|324110454|gb|EGC04628.1| hypothetical protein CUS_7307 [Ruminococcus albus 8] Length = 183 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/112 (24%), Positives = 57/112 (50%), Gaps = 4/112 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ + QP+ +E+ + +E L++ +++D G +T+ DCE ++ + ILD E Sbjct: 19 VTELAQPLADELGLFLWDVRFEKEGATWYLRVLIDKD-GGVTMEDCENFTRPFNKILDDE 77 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS--SGDKQKLIG 133 + I Y E SPG+ R + + F G V ++ +G+++ ++G Sbjct: 78 DPIAQSYVFECGSPGLGRELRKPIHFEVCIGDAVRVRLIRPDENGEREFIVG 129 >gi|94986975|ref|YP_594908.1| transcription elongation factor [Lawsonia intracellularis PHE/MN1-00] gi|167013025|sp|Q1MQZ0|RIMP_LAWIP RecName: Full=Ribosome maturation factor rimP gi|94731224|emb|CAJ54587.1| transcription elongation factor [Lawsonia intracellularis PHE/MN1-00] Length = 196 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/171 (22%), Positives = 74/171 (43%), Gaps = 17/171 (9%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN--------------MT 65 L I+ +I P+I + I L+ +++IFV+ + N +T Sbjct: 5 ALIETITQLISPLITAQGLKLWGIELINIPQPIIKIFVDTIETNRLHENNIINSKSEQIT 64 Query: 66 LRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMV---RKSDFLRWNGHVVACEIV 122 + C LS+ I L+VE + + LEVSSPG++R + S+++ + V E Sbjct: 65 IEQCASLSRLIGLTLEVEELFPNKWTLEVSSPGLERSFFTIQQLSNYINHDIDVTLKEQH 124 Query: 123 LSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 +++K G ++ ++ F L K ++I++ + A L+ Sbjct: 125 PLWPNRKKFYGTLISITDNTFMLNLSLAHRKSDEPENVSINWQQVRKATLV 175 >gi|307331527|ref|ZP_07610640.1| protein of unknown function DUF150 [Streptomyces violaceusniger Tu 4113] gi|306882844|gb|EFN13917.1| protein of unknown function DUF150 [Streptomyces violaceusniger Tu 4113] Length = 174 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 6/88 (6%) Query: 60 DDGNMTLRDCEELSQAISPILD-VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVA 118 DDG + L C ELS+ IS LD + + + Y LEV+SPG +RP+ + R G ++ Sbjct: 45 DDG-VQLDTCAELSRDISQTLDDTDAMGQVAYVLEVTSPGAERPLTEPRHYRRATGRLMR 103 Query: 119 CEIVLSSGDKQKLIGKIMGTSETGFFLE 146 + D +L+ +I+ + G LE Sbjct: 104 ARLT----DDAELVARIVSVDDEGLDLE 127 >gi|227486446|ref|ZP_03916762.1| protein of hypothetical function DUF150 [Anaerococcus lactolyticus ATCC 51172] gi|227235627|gb|EEI85642.1| protein of hypothetical function DUF150 [Anaerococcus lactolyticus ATCC 51172] Length = 147 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 77/153 (50%), Gaps = 13/153 (8%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLL--EEKNLLLQIFVERDDGNMTLRDCEELSQAI 76 M L + + ++ IE + + V + + ++ N L+ ++ ++DG +T+ DCE +S + Sbjct: 1 MDLIEKLKNALESDIENLGYDLVDLEFIGGKDGNRLI-FYIYKEDG-ITIDDCERVSGFL 58 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 LD ++I+ Y LEVSS + RP+ D LR ++ +I L +GD ++ K+ Sbjct: 59 DEKLDELDLIKSSYYLEVSSQDLSRPLKTDKDLLRNKDELL--KIKLKNGD--LILAKMK 114 Query: 137 GTSETGFFLEKE-----KRGEKDMNELQIAISF 164 + KE + + D+ E++I I F Sbjct: 115 DIKDESIVFAKEDGKDIEINKSDIKEIKIEIVF 147 >gi|94994922|ref|YP_603020.1| hypothetical protein MGAS10750_Spy1526 [Streptococcus pyogenes MGAS10750] gi|166979761|sp|Q1J5B0|RIMP_STRPF RecName: Full=Ribosome maturation factor rimP gi|94548430|gb|ABF38476.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS10750] Length = 178 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 4/64 (6%) Query: 50 NLLLQIFVERDDGNMTLRDCEELSQAISPILDV--ENIIEGHYRLEVSSPGIDRPMVRKS 107 + +L I V+++ G +T+ D +L+ ISP+LD + Y LEVSSPG++RP+ + + Sbjct: 55 DYILSILVDKE-GGITVEDTSDLTNIISPLLDTIDPDPFPNQYMLEVSSPGLERPL-KTA 112 Query: 108 DFLR 111 D L+ Sbjct: 113 DSLK 116 >gi|56807386|ref|ZP_00365365.1| COG0779: Uncharacterized protein conserved in bacteria [Streptococcus pyogenes M49 591] Length = 162 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 4/64 (6%) Query: 50 NLLLQIFVERDDGNMTLRDCEELSQAISPILDV--ENIIEGHYRLEVSSPGIDRPMVRKS 107 + +L I V+++ G +T+ D +L+ ISP+LD + Y LEVSSPG++RP+ + + Sbjct: 39 DYILSILVDKE-GGITVEDTSDLTNIISPLLDTIDPDPFPNQYMLEVSSPGLERPL-KTA 96 Query: 108 DFLR 111 D L+ Sbjct: 97 DSLK 100 >gi|50914807|ref|YP_060779.1| hypothetical protein M6_Spy1461 [Streptococcus pyogenes MGAS10394] gi|71904118|ref|YP_280921.1| hypothetical protein M28_Spy1456 [Streptococcus pyogenes MGAS6180] gi|71911226|ref|YP_282776.1| hypothetical protein M5005_Spy_1413 [Streptococcus pyogenes MGAS5005] gi|94989045|ref|YP_597146.1| hypothetical protein MGAS9429_Spy1415 [Streptococcus pyogenes MGAS9429] gi|94991043|ref|YP_599143.1| hypothetical protein MGAS10270_Spy1534 [Streptococcus pyogenes MGAS10270] gi|94992936|ref|YP_601035.1| hypothetical protein MGAS2096_Spy1439 [Streptococcus pyogenes MGAS2096] gi|209559842|ref|YP_002286314.1| hypothetical protein Spy49_1341c [Streptococcus pyogenes NZ131] gi|34223094|sp|P59819|RIMP_STRP1 RecName: Full=Ribosome maturation factor rimP gi|73921027|sp|Q5XAG7|RIMP_STRP6 RecName: Full=Ribosome maturation factor rimP gi|91208006|sp|Q48RU4|RIMP_STRPM RecName: Full=Ribosome maturation factor rimP gi|166979769|sp|Q1JFG0|RIMP_STRPD RecName: Full=Ribosome maturation factor rimP gi|166979847|sp|Q1JAB7|RIMP_STRPB RecName: Full=Ribosome maturation factor rimP gi|166979918|sp|Q1JKG7|RIMP_STRPC RecName: Full=Ribosome maturation factor rimP gi|226695935|sp|B5XHV7|RIMP_STRPZ RecName: Full=Ribosome maturation factor rimP gi|50903881|gb|AAT87596.1| Hypothetical cytosolic protein [Streptococcus pyogenes MGAS10394] gi|71803213|gb|AAX72566.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS6180] gi|71854008|gb|AAZ52031.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS5005] gi|94542553|gb|ABF32602.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS9429] gi|94544551|gb|ABF34599.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS10270] gi|94546444|gb|ABF36491.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS2096] gi|209541043|gb|ACI61619.1| transcription termination protein NusA-like protein [Streptococcus pyogenes NZ131] Length = 178 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 4/64 (6%) Query: 50 NLLLQIFVERDDGNMTLRDCEELSQAISPILDV--ENIIEGHYRLEVSSPGIDRPMVRKS 107 + +L I V+++ G +T+ D +L+ ISP+LD + Y LEVSSPG++RP+ + + Sbjct: 55 DYILSILVDKE-GGITVEDTSDLTNIISPLLDTIDPDPFPNQYMLEVSSPGLERPL-KTA 112 Query: 108 DFLR 111 D L+ Sbjct: 113 DSLK 116 >gi|325000942|ref|ZP_08122054.1| ribosome maturation protein RimP [Pseudonocardia sp. P1] Length = 209 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 24/173 (13%) Query: 21 LAGDISSVIQPVIEEMSFR--SVQISLLEEKN---LLLQIFVERDDGNMTLRDCEELSQA 75 LA + V++PV+ + +V++ ++ L++ + + L D LS+ Sbjct: 23 LADQLRGVLEPVVTDAGLEIDAVEVRTAGRRHAVKLVVDLPEASTATGIDLDDIARLSRT 82 Query: 76 ISPILDV-ENIIEGHYRLEVSSPGIDRPMVR----KSDFLRWNGHVVACEIVLSSGDK-Q 129 + LD E++IEG Y LEV+SPGIDRP+ + +FLR I L+ GD + Sbjct: 83 AAAELDPHEHLIEGSYTLEVTSPGIDRPLTTPRHWRRNFLRL------ARITLAGGDDLE 136 Query: 130 KLIGKIMGTSETGFFLEKEKRGE------KDMNELQIAISFDSLLSARLIVTD 176 IG+ G + K+ E D+ Q+ + F +A + D Sbjct: 137 ARIGR-AGDDRVQVAVPGRKQPELREIAYDDVTHAQVQVEFKPAPAAETALLD 188 >gi|139473253|ref|YP_001127968.1| hypothetical protein SpyM50378 [Streptococcus pyogenes str. Manfredo] gi|166990902|sp|A2RCZ7|RIMP_STRPG RecName: Full=Ribosome maturation factor rimP gi|134271499|emb|CAM29720.1| conserved hypothetical protein [Streptococcus pyogenes str. Manfredo] Length = 178 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 4/64 (6%) Query: 50 NLLLQIFVERDDGNMTLRDCEELSQAISPILDV--ENIIEGHYRLEVSSPGIDRPMVRKS 107 + +L I V+++ G +T+ D +L+ ISP+LD + Y LEVSSPG++RP+ + + Sbjct: 55 DYILSILVDKE-GGITVEDTSDLTNIISPLLDTIDPDPFPNQYMLEVSSPGLERPL-KTA 112 Query: 108 DFLR 111 D L+ Sbjct: 113 DSLK 116 >gi|317057641|ref|YP_004106108.1| hypothetical protein Rumal_3009 [Ruminococcus albus 7] gi|315449910|gb|ADU23474.1| protein of unknown function DUF150 [Ruminococcus albus 7] Length = 181 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/114 (23%), Positives = 58/114 (50%), Gaps = 4/114 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ + QP+ +E+ + +E L++ +++D G +T+ DCE ++ + ILD Sbjct: 17 VAGLAQPLADELGLFLWDVRFEKEGATWYLRVLIDKD-GGVTMEDCENFTRPFNKILDEA 75 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS--SGDKQKLIGKI 135 + I Y E SPG+ R + + F G VV ++ +G+++ ++G + Sbjct: 76 DPIPQSYVFECGSPGLGRELRKPIHFEVCIGDVVRVRLIRPDENGEREFIVGLV 129 >gi|15675575|ref|NP_269749.1| hypothetical protein SPy_1725 [Streptococcus pyogenes M1 GAS] gi|19746627|ref|NP_607763.1| hypothetical protein spyM18_1733 [Streptococcus pyogenes MGAS8232] gi|13622779|gb|AAK34470.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS] gi|19748846|gb|AAL98262.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232] Length = 127 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 4/64 (6%) Query: 50 NLLLQIFVERDDGNMTLRDCEELSQAISPILDV--ENIIEGHYRLEVSSPGIDRPMVRKS 107 + +L I V+++ G +T+ D +L+ ISP+LD + Y LEVSSPG++RP+ + + Sbjct: 4 DYILSILVDKE-GGITVEDTSDLTNIISPLLDTIDPDPFPNQYMLEVSSPGLERPL-KTA 61 Query: 108 DFLR 111 D L+ Sbjct: 62 DSLK 65 >gi|306826864|ref|ZP_07460164.1| protein of hypothetical function DUF150 [Streptococcus pyogenes ATCC 10782] gi|34223095|sp|P59820|RIMP_STRP8 RecName: Full=Ribosome maturation factor rimP gi|304430882|gb|EFM33891.1| protein of hypothetical function DUF150 [Streptococcus pyogenes ATCC 10782] Length = 178 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 4/64 (6%) Query: 50 NLLLQIFVERDDGNMTLRDCEELSQAISPILDV--ENIIEGHYRLEVSSPGIDRPMVRKS 107 + +L I V+++ G +T+ D +L+ ISP+LD + Y LEVSSPG++RP+ + + Sbjct: 55 DYILSILVDKE-GGITVEDTSDLTNIISPLLDTIDPDPFPNQYMLEVSSPGLERPL-KTA 112 Query: 108 DFLR 111 D L+ Sbjct: 113 DSLK 116 >gi|309811524|ref|ZP_07705306.1| conserved hypothetical protein [Dermacoccus sp. Ellin185] gi|308434575|gb|EFP58425.1| conserved hypothetical protein [Dermacoccus sp. Ellin185] Length = 183 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 5/112 (4%) Query: 43 ISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII-EGHYRLEVSSPGIDR 101 + +L ++++ L+ VE +TL + + ++ I L+ +++ E Y LEVSSPG DR Sbjct: 37 VRVLVDRDVALETAVEESIEPVTLDEVTDATRVIDAELEASDVMGEQPYVLEVSSPGTDR 96 Query: 102 PMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEK 153 P+ F R G +V + D+ K+ G+I + E+ G+K Sbjct: 97 PLTLPRHFARNVGRLVTVTL----DDESKVAGRITRADAQTVEVTPEQGGKK 144 >gi|325067075|ref|ZP_08125748.1| ribosome maturation protein RimP [Actinomyces oris K20] Length = 172 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 59/110 (53%), Gaps = 6/110 (5%) Query: 10 KYEPRIFGDMGLAGDISSVIQPVIEE--MSFRSVQISLLEEKNLLLQIFVERDDG--NMT 65 + +PR D LA ++ ++ P++ + + SV+ + K ++++FV+ DG ++ Sbjct: 7 RKDPRQRAD-ALARSLADLLSPIVNDAGLHLESVETTR-AGKYSVVRVFVDLLDGPGDLD 64 Query: 66 LRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGH 115 L ++ AIS LD + ++G Y LEVS+PG +R + F R GH Sbjct: 65 LDALGPVTAAISQALDEADPVKGQYTLEVSTPGAERELTTLRHFRRAVGH 114 >gi|55820433|ref|YP_138875.1| hypothetical protein stu0340 [Streptococcus thermophilus LMG 18311] gi|55822317|ref|YP_140758.1| hypothetical protein str0340 [Streptococcus thermophilus CNRZ1066] gi|81559802|sp|Q5M1C3|RIMP_STRT1 RecName: Full=Ribosome maturation factor rimP gi|81560972|sp|Q5M5V9|RIMP_STRT2 RecName: Full=Ribosome maturation factor rimP gi|55736418|gb|AAV60060.1| conserved hypothetical protein [Streptococcus thermophilus LMG 18311] gi|55738302|gb|AAV61943.1| conserved hypothetical protein [Streptococcus thermophilus CNRZ1066] Length = 163 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 21/159 (13%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK---NLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 +++V+ P I + + V I EK + +L + +++ G +T+ D +L++ ISP+LD Sbjct: 15 VTAVVAPAIPD-PYELVDIEY--EKIGSDYILSVLIDKP-GGITVEDTADLTEIISPLLD 70 Query: 82 V--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI-GKIM-- 136 + Y LEVSSPG++RP+ K G + + + DK K+ G ++ Sbjct: 71 TIQPDPFPDQYMLEVSSPGLERPLKTKEALKNAVGQYINVSL-YKAIDKIKIFQGDLLAF 129 Query: 137 -GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G + T +L+K + + I + ++ ARL V Sbjct: 130 DGETLTIDYLDKTRHK-------TVEIPYQTVAKARLAV 161 >gi|226355943|ref|YP_002785683.1| hypothetical protein Deide_10390 [Deinococcus deserti VCD115] gi|259585746|sp|C1CUR2|RIMP_DEIDV RecName: Full=Ribosome maturation factor rimP gi|226317933|gb|ACO45929.1| conserved hypothetical protein [Deinococcus deserti VCD115] Length = 154 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 15/117 (12%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE---EKNLLLQIFVER-DDGNMTLRDCEELSQAISPIL 80 + + +E + F +++ + EK +L++ V+R D+ +T+ D + S+A Sbjct: 11 LQQIAHAAVEPLGFEVLEVQVQSQGGEKIVLVR--VDRLDEQPVTMEDLTKASRAAEAEF 68 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDF---------LRWNGHVVACEIVLSSGDK 128 D + + G YRLE SPG RP+ R F +R GH I SGD+ Sbjct: 69 DRLDPVAGEYRLEFESPGSKRPLTRARHFERMLGLKARVRGEGHAFTAPIKAVSGDQ 125 >gi|312880099|ref|ZP_07739899.1| protein of unknown function DUF150 [Aminomonas paucivorans DSM 12260] gi|310783390|gb|EFQ23788.1| protein of unknown function DUF150 [Aminomonas paucivorans DSM 12260] Length = 151 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 5/93 (5%) Query: 61 DGNMTLRDCEELSQAISPILDVEN-IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVAC 119 +G ++L+DCE ++ ++ LD + + LEVSSPG +RP+VR D+ R+ G + Sbjct: 45 EGGISLQDCETAAREVNAFLDEHDEAFSEPFFLEVSSPGPERPLVRLEDYRRFRGEWI-- 102 Query: 120 EIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGE 152 I +G K+ L I E G + + GE Sbjct: 103 RISWKNGKKRVLC--IDDVGEDGVVTLRSREGE 133 >gi|254821856|ref|ZP_05226857.1| hypothetical protein MintA_18122 [Mycobacterium intracellulare ATCC 13950] Length = 170 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 4/77 (5%) Query: 69 CEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 LS++ S +LD + I HY LEVSS G+DRP+ F R G V ++ LS G Sbjct: 55 AATLSRSASALLDDLDTIGDHYVLEVSSRGVDRPLTSAKHFRRARGRKV--DLTLSDG-- 110 Query: 129 QKLIGKIMGTSETGFFL 145 L G+I T+E L Sbjct: 111 STLTGRIGETNEDAVAL 127 >gi|269956008|ref|YP_003325797.1| hypothetical protein Xcel_1208 [Xylanimonas cellulosilytica DSM 15894] gi|269304689|gb|ACZ30239.1| protein of unknown function DUF150 [Xylanimonas cellulosilytica DSM 15894] Length = 192 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 40/81 (49%) Query: 70 EELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ 129 + +S+AIS LD ++++ G Y LEVS+PG RP+ F R +V +V + Sbjct: 69 DAVSRAISAALDADDVVRGVYVLEVSTPGTSRPLTELRHFKRARTRLVTLSLVDGGEAEG 128 Query: 130 KLIGKIMGTSETGFFLEKEKR 150 +L + GT LE R Sbjct: 129 RLQDVVAGTDGDELVLEDGGR 149 >gi|183981904|ref|YP_001850195.1| hypothetical protein MMAR_1891 [Mycobacterium marinum M] gi|226696166|sp|B2HKR9|RIMP_MYCMM RecName: Full=Ribosome maturation factor rimP gi|183175230|gb|ACC40340.1| conserved hypothetical protein [Mycobacterium marinum M] Length = 177 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 33/78 (42%), Positives = 45/78 (57%), Gaps = 8/78 (10%) Query: 61 DGNMTLRDCEE---LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 DG+ TL D + LS++ S +LD + I Y LEVSSPGIDRP+ + F R G V Sbjct: 45 DGDTTL-DLDTIAVLSRSASSLLDSLDNIGDSYVLEVSSPGIDRPLTSEKHFRRARGRKV 103 Query: 118 ACEIVLSSGDKQKLIGKI 135 E+ L+ G +L G+I Sbjct: 104 --ELTLADG--SQLTGRI 117 >gi|227499285|ref|ZP_03929397.1| protein of hypothetical function DUF150 [Anaerococcus tetradius ATCC 35098] gi|227218636|gb|EEI83870.1| protein of hypothetical function DUF150 [Anaerococcus tetradius ATCC 35098] Length = 147 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 2/104 (1%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 M L + + + IE M + V I KN +L F+ +G +T+ DCE+ S + Sbjct: 1 MNLTNRLKEIFERDIESMGYELVDIEFKGGKNNKVLTFFIYNKEG-ITIEDCEKASAFLD 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 LD +II+ Y LEVSS + RP+ D R ++ ++ Sbjct: 60 TKLDEIDIIKDSYYLEVSSQDLSRPLKTDRDLERNKDELLKVKL 103 >gi|227890228|ref|ZP_04008033.1| protein of hypothetical function DUF150 [Lactobacillus johnsonii ATCC 33200] gi|227849230|gb|EEJ59316.1| protein of hypothetical function DUF150 [Lactobacillus johnsonii ATCC 33200] Length = 172 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 3/96 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 ++ V+ P+ E V + ++EK L+I+V+R G + + + LS+ +S LD Sbjct: 22 VADVVTPLAEARGDELVDVEYVKEKKQYYLRIYVDRRPGGIDIEEIANLSELVSEKLDEL 81 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + Y LE+SSPG++RP+ + D+ R G + Sbjct: 82 DPDPFPEPYILELSSPGLERPIKNEKDWERAKGSYI 117 >gi|72161179|ref|YP_288836.1| hypothetical protein Tfu_0775 [Thermobifida fusca YX] gi|91208371|sp|Q47RV4|RIMP_THEFY RecName: Full=Ribosome maturation factor rimP gi|71914911|gb|AAZ54813.1| conserved hypothetical protein [Thermobifida fusca YX] Length = 157 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 9/99 (9%) Query: 71 ELSQAISPILD-VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ 129 E+SQ IS LD V+ + + Y LEV+SPG+DRP+ + R G +V +V Sbjct: 56 EVSQKISTALDEVDVMGQSPYVLEVTSPGVDRPLTEPRHWRRARGRLVHAPLVAGG---- 111 Query: 130 KLIGKIMGTSETGFFLEKEKRGE----KDMNELQIAISF 164 ++ G+++ ETG + + + + D+ ++ + F Sbjct: 112 QVKGRVIDADETGVTFDVDGQSQVYAFSDLGRGKVQVEF 150 >gi|240172758|ref|ZP_04751417.1| hypothetical protein MkanA1_25812 [Mycobacterium kansasii ATCC 12478] Length = 177 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 4/75 (5%) Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 D + L LS++ S +LD + I Y LEVSSPG++RP+ + F R G + Sbjct: 47 DTALDLDTIAALSRSASALLDGLDAIRDKYVLEVSSPGVERPLTSEKHFRRARGR----K 102 Query: 121 IVLSSGDKQKLIGKI 135 I L+ D +L G++ Sbjct: 103 IELTLADGSRLTGRV 117 >gi|297206127|ref|ZP_06923522.1| protein of hypothetical function DUF150 [Lactobacillus jensenii JV-V16] gi|297149253|gb|EFH29551.1| protein of hypothetical function DUF150 [Lactobacillus jensenii JV-V16] Length = 169 Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 11/103 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ ++ P+ E+ V + ++EKN L+I+V+R + + + + LS+ +S LD Sbjct: 19 VTDLVTPLAEKRGDELVDVEYVKEKNQYYLRIYVDRGESGIDIEEIAALSEIVSEELDKL 78 Query: 84 NI--IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHV-----VAC 119 N Y LE+SSPG++RP+ + D WN + VAC Sbjct: 79 NPDPFTEPYMLELSSPGLERPIKNERD---WNKALNKYIHVAC 118 >gi|116629467|ref|YP_814639.1| hypothetical protein LGAS_0810 [Lactobacillus gasseri ATCC 33323] gi|116095049|gb|ABJ60201.1| hypothetical protein LGAS_0810 [Lactobacillus gasseri ATCC 33323] Length = 172 Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 3/96 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 ++ V+ P+ E V + ++EK L+I+V+R G + + + LS+ +S LD Sbjct: 22 VADVVTPLAEARGDELVDVEYVKEKKQYYLRIYVDRRPGGIDIEEIANLSELVSEKLDEL 81 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + Y LE+SSPG++RP+ + D+ R G + Sbjct: 82 DPDPFPEPYILELSSPGLERPIKNEKDWERAKGSYI 117 >gi|226226959|ref|YP_002761065.1| hypothetical protein GAU_1553 [Gemmatimonas aurantiaca T-27] gi|259585777|sp|C1A8N5|RIMP_GEMAT RecName: Full=Ribosome maturation factor rimP gi|226090150|dbj|BAH38595.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 155 Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 64/123 (52%), Gaps = 8/123 (6%) Query: 52 LLQIFVER-DDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFL 110 +L+I ++R D+ +T+ DC +S+A+ L+ ++ Y LEVSSPG DRP+ +D+ Sbjct: 33 VLEIRIDRRDEEKVTIDDCARVSRALEARLEAAALVGEQYVLEVSSPGADRPLRHAADWR 92 Query: 111 RWNGHVVACEIVLSSGDKQKL-IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLS 169 R+ G L +G KQ++ I + G L ++ +G ++++ + Sbjct: 93 RFVGRRATVTSGLLAGGKQEVEIVAVTGEGGAEVALVRDPKGR------EVSVPLREVSQ 146 Query: 170 ARL 172 ARL Sbjct: 147 ARL 149 >gi|116669974|ref|YP_830907.1| hypothetical protein Arth_1413 [Arthrobacter sp. FB24] gi|259585698|sp|A0JUT7|RIMP_ARTS2 RecName: Full=Ribosome maturation factor rimP gi|116610083|gb|ABK02807.1| protein of unknown function DUF150 [Arthrobacter sp. FB24] Length = 205 Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 11/130 (8%) Query: 50 NLLLQIFV---ERDDGNMTLRDCEELSQAISPILDVENIIEGH-YRLEVSSPGIDRPMVR 105 N ++ + V + + G ++L E+S+ +S ILD + + Y LEVSSPG+ RP+ Sbjct: 57 NRVVHVVVDLPQEETGGVSLDVIAEISKELSGILDGDPSYDSRPYDLEVSSPGVGRPLTE 116 Query: 106 KSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQ---IAI 162 + R G +V ++ + L G+I + G L E +K M Q I Sbjct: 117 PRHWHRARGRMVKVNVIQG----ENLTGRIQSVDDDGVTLVPEIAAKKGMKPKQGEPEKI 172 Query: 163 SFDSLLSARL 172 FD + + ++ Sbjct: 173 PFDRIRNGKV 182 >gi|257439269|ref|ZP_05615024.1| protein associated with NUS operon [Faecalibacterium prausnitzii A2-165] gi|257198311|gb|EEU96595.1| protein associated with NUS operon [Faecalibacterium prausnitzii A2-165] Length = 163 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 2/102 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRD-CEELSQAISPI 79 A + ++++P +E M R + +E + L++ +++ DG D C ++S A+ PI Sbjct: 10 AQRVEALVRPTVEGMGLRLWDVVFEKEGPDWYLRVLIDKTDGTTMDTDTCADVSHALDPI 69 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 LD + IE Y LEV SPG+ R + R + G V+ + Sbjct: 70 LDEADPIEQSYYLEVGSPGLGRKLTRPEHYEAVQGQKVSVRL 111 >gi|291279909|ref|YP_003496744.1| hypothetical protein DEFDS_1528 [Deferribacter desulfuricans SSM1] gi|290754611|dbj|BAI80988.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 158 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 5/83 (6%) Query: 47 EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE-GHYRLEVSSPGIDRPMVR 105 E+ +L+IF+E D N+ L DC +S+ +S LD +II +Y LEVS+PG R + Sbjct: 35 EKSGWVLRIFIEGD--NVGLSDCISVSKQVSKWLDEVDIIPYENYNLEVSTPGATREIRN 92 Query: 106 KSDFLRWNGHVVACEIVLSSGDK 128 +F ++ G C+I L DK Sbjct: 93 LDEFKKYIGK--YCKIKLVEHDK 113 >gi|195977580|ref|YP_002122824.1| hypothetical protein Sez_0439 [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|259586200|sp|B4U1E4|RIMP_STREM RecName: Full=Ribosome maturation factor rimP gi|195974285|gb|ACG61811.1| hypothetical protein Sez_0439 [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 127 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 3/56 (5%) Query: 50 NLLLQIFVERDDGNMTLRDCEELSQAISPILDV--ENIIEGHYRLEVSSPGIDRPM 103 + +L I V++ G +T+ D EL++ ISP+LD + Y LEVSSPG++RP+ Sbjct: 4 DYVLSILVDKASG-ITVEDTAELTELISPLLDTISPDPFPDQYMLEVSSPGLERPL 58 >gi|256851260|ref|ZP_05556649.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN] gi|260660684|ref|ZP_05861599.1| UPF0090 protein [Lactobacillus jensenii 115-3-CHN] gi|282934728|ref|ZP_06339971.1| conserved hypothetical protein [Lactobacillus jensenii 208-1] gi|256616322|gb|EEU21510.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN] gi|260548406|gb|EEX24381.1| UPF0090 protein [Lactobacillus jensenii 115-3-CHN] gi|281301303|gb|EFA93604.1| conserved hypothetical protein [Lactobacillus jensenii 208-1] Length = 158 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 11/103 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ ++ P+ E+ V + ++EKN L+I+V+R + + + + LS+ +S LD Sbjct: 8 VTDLVTPLAEKRGDELVDVEYVKEKNQYYLRIYVDRGESGIDIEEIAALSEIVSEELDKL 67 Query: 84 NI--IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHV-----VAC 119 N Y LE+SSPG++RP+ + D WN + VAC Sbjct: 68 NPDPFTEPYMLELSSPGLERPIKNERD---WNKALNKYIHVAC 107 >gi|320528333|ref|ZP_08029495.1| hypothetical protein HMPREF9430_01620 [Solobacterium moorei F0204] gi|320131247|gb|EFW23815.1| hypothetical protein HMPREF9430_01620 [Solobacterium moorei F0204] Length = 153 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 3/86 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ + QPV +E R +I L EK L Q+ ++ D + L C E+S+ + +LD Sbjct: 7 LTKLFQPVFDECHVRLYEIVWLGNEKTL--QVAIDNDAHAIDLDICAEVSEKLGVVLDKY 64 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDF 109 + I+ Y LEV SPG +R + ++F Sbjct: 65 DPIKEEYSLEVCSPGAEREIKDYAEF 90 >gi|89900916|ref|YP_523387.1| hypothetical protein Rfer_2132 [Rhodoferax ferrireducens T118] gi|122479183|sp|Q21WJ7|RIMP_RHOFD RecName: Full=Ribosome maturation factor rimP gi|89345653|gb|ABD69856.1| protein of unknown function DUF150 [Rhodoferax ferrireducens T118] Length = 204 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 35/52 (67%), Gaps = 2/52 (3%) Query: 64 MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGH 115 +T+ DCE++++ + L+V+ + + RLEVSSPGIDRP+ DF R+ G Sbjct: 50 VTVEDCEKVTRQLLFALEVDGV--DYKRLEVSSPGIDRPLRHGQDFERFVGR 99 >gi|323340012|ref|ZP_08080278.1| protein of hypothetical function DUF150 [Lactobacillus ruminis ATCC 25644] gi|323092518|gb|EFZ35124.1| protein of hypothetical function DUF150 [Lactobacillus ruminis ATCC 25644] Length = 157 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 52/90 (57%), Gaps = 4/90 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 ++ ++ P+++E F V ++E K+ L+I++++ G + + +C +S + LD Sbjct: 8 VTELVTPILDERHFELVDAEFVKEGKSWYLRIYIDKP-GGINIEECALVSDLLGEKLDNC 66 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 + I Y LEVSSPG +RP+ ++ D+ R Sbjct: 67 DPDPIPQAYFLEVSSPGAERPLKKERDYER 96 >gi|326692689|ref|ZP_08229694.1| hypothetical protein LargK3_02896 [Leuconostoc argentinum KCTC 3773] Length = 158 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 31/129 (24%), Positives = 67/129 (51%), Gaps = 8/129 (6%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGN-MTLRDCEELSQAISPILD 81 +I+++I P++ E + ++ +E +L+I V++ D +T+ D + +QA++ +LD Sbjct: 8 EITALITPILVEQNDLLWDLTYTKEGGQKVLRIMVDKPDHTFITMADITDFTQAVNDLLD 67 Query: 82 V--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRW---NGHVVACEIVLSSGDKQKLIGKIM 136 + I Y L++SSPG DRP+ + + +W + + + ++K GK+ Sbjct: 68 TVEPDPIPEAYLLDISSPGADRPLKQPWHY-KWAQEADETILVALFAAKDGQKKWQGKVK 126 Query: 137 GTSETGFFL 145 ++ G L Sbjct: 127 SVTDDGIVL 135 >gi|291298940|ref|YP_003510218.1| hypothetical protein Snas_1418 [Stackebrandtia nassauensis DSM 44728] gi|290568160|gb|ADD41125.1| protein of unknown function DUF150 [Stackebrandtia nassauensis DSM 44728] Length = 162 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 7/103 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I +V++PV+ E + ++ + + + L+++ V+RD G + L +S+ +S LD Sbjct: 9 ILAVLEPVLAEAGYDLEELKVSQAGRRTLVRVLVDRDAG-VDLDAIASVSRVLSKALDKS 67 Query: 84 NIIEG-----HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 +G Y LEVSSPG+DRP+ + R G +V+ + Sbjct: 68 EADDGPFATNSYTLEVSSPGVDRPLTLPRHWRRNVGRLVSVRL 110 >gi|118617679|ref|YP_906011.1| hypothetical protein MUL_2119 [Mycobacterium ulcerans Agy99] gi|166987594|sp|A0PQC1|RIMP_MYCUA RecName: Full=Ribosome maturation factor rimP gi|118569789|gb|ABL04540.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] Length = 177 Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust. Identities = 33/78 (42%), Positives = 45/78 (57%), Gaps = 8/78 (10%) Query: 61 DGNMTLRDCEE---LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 DG+ TL D + LS++ S +LD + I Y LEVSSPGIDRP+ + F R G V Sbjct: 45 DGDTTL-DLDTIAVLSRSASSLLDSLDNIGDSYVLEVSSPGIDRPLTSEKHFRRARGPKV 103 Query: 118 ACEIVLSSGDKQKLIGKI 135 E+ L+ G +L G+I Sbjct: 104 --ELTLADG--SQLTGRI 117 >gi|259016315|sp|Q8DHL1|RIMP_THEEB RecName: Full=Ribosome maturation factor rimP Length = 157 Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 1/118 (0%) Query: 34 EEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLE 93 E + SVQ L + +L++ V + + +L DCE LS+A+ LD E Y LE Sbjct: 21 EHLDLVSVQW-LTHQSPPILRVEVRHPENDTSLEDCERLSRALEMALDELPEFEFAYVLE 79 Query: 94 VSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRG 151 VSSPG+ + DF + G V K G ++ E +L + R Sbjct: 80 VSSPGLSDYLSSDRDFDAFRGFPVRVTTTAPHRGKTLWEGNLIRRDEVNVYLNQRGRS 137 >gi|251783185|ref|YP_002997490.1| hypothetical protein SDEG_1793 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391817|dbj|BAH82276.1| hypothetical protein SDEG_1793 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 149 Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 3/56 (5%) Query: 50 NLLLQIFVERDDGNMTLRDCEELSQAISPILDV--ENIIEGHYRLEVSSPGIDRPM 103 + +L I V+++ G +T+ D +L+ ISP+LD + Y LEVSSPG++RP+ Sbjct: 26 DYVLSILVDKE-GGITVEDTSDLTDIISPLLDTITPDPFPDQYMLEVSSPGLERPL 80 >gi|22299481|ref|NP_682728.1| hypothetical protein tll1938 [Thermosynechococcus elongatus BP-1] gi|22295664|dbj|BAC09490.1| tll1938 [Thermosynechococcus elongatus BP-1] Length = 168 Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 1/118 (0%) Query: 34 EEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLE 93 E + SVQ L + +L++ V + + +L DCE LS+A+ LD E Y LE Sbjct: 32 EHLDLVSVQW-LTHQSPPILRVEVRHPENDTSLEDCERLSRALEMALDELPEFEFAYVLE 90 Query: 94 VSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRG 151 VSSPG+ + DF + G V K G ++ E +L + R Sbjct: 91 VSSPGLSDYLSSDRDFDAFRGFPVRVTTTAPHRGKTLWEGNLIRRDEVNVYLNQRGRS 148 >gi|323127912|gb|ADX25209.1| hypothetical protein SDE12394_08865 [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 127 Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 3/56 (5%) Query: 50 NLLLQIFVERDDGNMTLRDCEELSQAISPILDV--ENIIEGHYRLEVSSPGIDRPM 103 + +L I V+++ G +T+ D +L+ ISP+LD + Y LEVSSPG++RP+ Sbjct: 4 DYVLSILVDKE-GGITVEDTSDLTDIISPLLDTITPDPFPDQYMLEVSSPGLERPL 58 >gi|322412489|gb|EFY03397.1| hypothetical protein SDD27957_08990 [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 127 Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 3/56 (5%) Query: 50 NLLLQIFVERDDGNMTLRDCEELSQAISPILDV--ENIIEGHYRLEVSSPGIDRPM 103 + +L I V+++ G +T+ D +L+ ISP+LD + Y LEVSSPG++RP+ Sbjct: 4 DYVLSILVDKE-GGITVEDTSDLTDIISPLLDTITPDPFPDQYMLEVSSPGLERPL 58 >gi|42519363|ref|NP_965293.1| hypothetical protein LJ1491 [Lactobacillus johnsonii NCC 533] gi|51316714|sp|Q74IS4|RIMP_LACJO RecName: Full=Ribosome maturation factor rimP gi|41583651|gb|AAS09259.1| hypothetical protein LJ_1491 [Lactobacillus johnsonii NCC 533] Length = 158 Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 3/96 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 ++ V+ P+ E V + ++EK L+I+V+R G + + + LS+ +S LD Sbjct: 8 VADVVTPLAEARGDELVDVEYVKEKKQYYLRIYVDRRPGGIDIEEIANLSELVSEKLDEL 67 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + Y LE+SSPG++RP+ + D+ R G + Sbjct: 68 DPDPFPEPYILELSSPGLERPIKNEKDWERAKGSYI 103 >gi|329947838|ref|ZP_08294770.1| hypothetical protein HMPREF9056_02685 [Actinomyces sp. oral taxon 170 str. F0386] gi|328523462|gb|EGF50560.1| hypothetical protein HMPREF9056_02685 [Actinomyces sp. oral taxon 170 str. F0386] Length = 165 Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust. Identities = 28/110 (25%), Positives = 56/110 (50%), Gaps = 4/110 (3%) Query: 9 SKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDG--NMT 65 + ++PR D LA ++ ++ PV+ + + + ++++FV+ DG ++ Sbjct: 2 AAHDPRKRSD-ALARSLTDLLAPVVADAGLHLEAVETTRAGRYSVVRVFVDLADGPGDLD 60 Query: 66 LRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGH 115 + ++ A+S LD + ++G Y LEVS+PG +R + F R GH Sbjct: 61 IDTLGPVTAAVSQALDESDPVKGQYTLEVSTPGAERELSTLRHFRRAVGH 110 >gi|238852617|ref|ZP_04643027.1| conserved hypothetical protein [Lactobacillus gasseri 202-4] gi|282850816|ref|ZP_06260190.1| conserved hypothetical protein [Lactobacillus gasseri 224-1] gi|311110886|ref|ZP_07712283.1| SP14.3 protein [Lactobacillus gasseri MV-22] gi|259585807|sp|Q044C1|RIMP_LACGA RecName: Full=Ribosome maturation factor rimP gi|238834763|gb|EEQ26990.1| conserved hypothetical protein [Lactobacillus gasseri 202-4] gi|282557768|gb|EFB63356.1| conserved hypothetical protein [Lactobacillus gasseri 224-1] gi|311066040|gb|EFQ46380.1| SP14.3 protein [Lactobacillus gasseri MV-22] Length = 158 Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 3/96 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 ++ V+ P+ E V + ++EK L+I+V+R G + + + LS+ +S LD Sbjct: 8 VADVVTPLAEARGDELVDVEYVKEKKQYYLRIYVDRRPGGIDIEEIANLSELVSEKLDEL 67 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + Y LE+SSPG++RP+ + D+ R G + Sbjct: 68 DPDPFPEPYILELSSPGLERPIKNEKDWERAKGSYI 103 >gi|329667118|gb|AEB93066.1| hypothetical protein LJP_0738 [Lactobacillus johnsonii DPC 6026] Length = 158 Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 3/96 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 ++ V+ P+ E V + ++EK L+I+V+R G + + + LS+ +S LD Sbjct: 8 VADVVTPLAEARGDELVDVEYVKEKKQYYLRIYVDRRPGGIDIEEIANLSELVSEKLDEL 67 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + Y LE+SSPG++RP+ + D+ R G + Sbjct: 68 DPDPFPEPYILELSSPGLERPIKNEKDWERAKGSYI 103 >gi|302528543|ref|ZP_07280885.1| UPF0090 protein [Streptomyces sp. AA4] gi|302437438|gb|EFL09254.1| UPF0090 protein [Streptomyces sp. AA4] Length = 175 Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 38/55 (69%), Gaps = 2/55 (3%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDV-ENIIEGHYRLEVSSPGIDRPMVR 105 L+++ V+ DDG + L + E+S+ +S LD E+++ Y LEV+SPG+DRP+ + Sbjct: 40 LVKVVVDSDDG-VGLDEVAEVSRTVSAALDENEHVLASAYTLEVTSPGLDRPLTQ 93 >gi|269795642|ref|YP_003315097.1| hypothetical protein Sked_23480 [Sanguibacter keddieii DSM 10542] gi|269097827|gb|ACZ22263.1| uncharacterized conserved protein [Sanguibacter keddieii DSM 10542] Length = 181 Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust. Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 4/106 (3%) Query: 21 LAGDISSVIQPVIEE--MSFRSVQISLLEEKNLLLQIF--VERDDGNMTLRDCEELSQAI 76 +A ++ ++P +E + VQ++ + ++ + E G + L E+S+ I Sbjct: 6 IAEQVADAVRPGVESAGLVLEDVQVAPAGARTVVRVVLDLTEDQTGALGLDQVAEVSRVI 65 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV 122 S LD + G + LEV+SPG RP+ F R +VA +V Sbjct: 66 SDTLDTLPALPGKFTLEVTSPGTSRPLTELRHFKRARTRLVAVTLV 111 >gi|308233944|ref|ZP_07664681.1| hypothetical protein AvagD15_02782 [Atopobium vaginae DSM 15829] gi|328943956|ref|ZP_08241421.1| hypothetical protein HMPREF0091_10646 [Atopobium vaginae DSM 15829] gi|327491925|gb|EGF23699.1| hypothetical protein HMPREF0091_10646 [Atopobium vaginae DSM 15829] Length = 156 Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 3/84 (3%) Query: 63 NMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV 122 +TL + S+ I+ +LD + I+ Y LEVSSPG+ RP+ R DF R+ G V E+V Sbjct: 52 TITLDEVAAQSEWINEVLDSLDPIDSSYTLEVSSPGLARPLRRIHDFERFCGQEV--ELV 109 Query: 123 LSSGD-KQKLIGKIMGTSETGFFL 145 + + +++ GK+ F L Sbjct: 110 TRALEGRKRFTGKLSSVEGNTFTL 133 >gi|154509103|ref|ZP_02044745.1| hypothetical protein ACTODO_01620 [Actinomyces odontolyticus ATCC 17982] gi|153798737|gb|EDN81157.1| hypothetical protein ACTODO_01620 [Actinomyces odontolyticus ATCC 17982] Length = 156 Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 65/123 (52%), Gaps = 14/123 (11%) Query: 52 LLQIFVERD--DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDF 109 LL++ VE G + ++S+A+S LDV + I+G Y LEVS+PG +R + + + Sbjct: 38 LLRVIVEAPIGAGGIDSDTLADVSRAVSKALDVADPIDGEYLLEVSTPGAERELTKVGHW 97 Query: 110 LRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGE------KDMNELQIAIS 163 +R G +V I L +G + G+++ +ET ++ + GE +DM + + + Sbjct: 98 MRQIGRLV--RIKLRAG--GYVSGRVVAANETSATIDVD--GETTIIDYQDMRKARSRVD 151 Query: 164 FDS 166 F S Sbjct: 152 FGS 154 >gi|289643648|ref|ZP_06475761.1| protein of unknown function DUF150 [Frankia symbiont of Datisca glomerata] gi|289506539|gb|EFD27525.1| protein of unknown function DUF150 [Frankia symbiont of Datisca glomerata] Length = 221 Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 12/78 (15%) Query: 71 ELSQAISPILDVENI--------IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV 122 E S+ S +LD + G Y LEVSSPG+DRP+V + R G +V+ Sbjct: 82 EASRVASAVLDAAETDPAAGDPPLAGPYVLEVSSPGVDRPLVAPRHWHRARGRLVS---- 137 Query: 123 LSSGDKQKLIGKIMGTSE 140 + + D ++L+G++ T E Sbjct: 138 VRTRDGRELLGRVRATDE 155 >gi|218282330|ref|ZP_03488620.1| hypothetical protein EUBIFOR_01202 [Eubacterium biforme DSM 3989] gi|218216703|gb|EEC90241.1| hypothetical protein EUBIFOR_01202 [Eubacterium biforme DSM 3989] Length = 173 Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 34/66 (51%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 LL++ VE++DG M L C S I +LD ++ Y LEV SPG +R + + R Sbjct: 53 LLRVSVEKEDGTMDLDTCASCSDVIGQMLDEKDWYSHEYMLEVCSPGAERELRTDEEVQR 112 Query: 112 WNGHVV 117 G V Sbjct: 113 AVGKYV 118 >gi|238854743|ref|ZP_04645073.1| conserved hypothetical protein [Lactobacillus jensenii 269-3] gi|260663975|ref|ZP_05864828.1| conserved hypothetical protein [Lactobacillus jensenii SJ-7A-US] gi|282932866|ref|ZP_06338263.1| conserved hypothetical protein [Lactobacillus jensenii 208-1] gi|313472266|ref|ZP_07812758.1| SP14.3 protein [Lactobacillus jensenii 1153] gi|238832533|gb|EEQ24840.1| conserved hypothetical protein [Lactobacillus jensenii 269-3] gi|239529662|gb|EEQ68663.1| SP14.3 protein [Lactobacillus jensenii 1153] gi|260561861|gb|EEX27830.1| conserved hypothetical protein [Lactobacillus jensenii SJ-7A-US] gi|281302901|gb|EFA95106.1| conserved hypothetical protein [Lactobacillus jensenii 208-1] Length = 158 Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust. Identities = 29/100 (29%), Positives = 58/100 (58%), Gaps = 5/100 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 +++++ P+ E+ V + ++E+N L+I+V+R + + + + LS+ +S LD Sbjct: 8 VTNLVSPIAEKRGDELVDVEYVKEQNQYYLRIYVDRGESGIDIEEIAALSEMVSEELDKL 67 Query: 84 NI--IEGHYRLEVSSPGIDRPMVRKSDFLRW-NGHV-VAC 119 N Y LE+SSPG++RP+ + D+ + N ++ VAC Sbjct: 68 NPDPFTEPYMLELSSPGLERPIKNERDWEKAVNKYIHVAC 107 >gi|269215360|ref|ZP_06159214.1| hypothetical protein HMPREF0762_00005 [Slackia exigua ATCC 700122] gi|269131216|gb|EEZ62290.1| hypothetical protein HMPREF0762_00005 [Slackia exigua ATCC 700122] Length = 157 Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 1/94 (1%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSD 108 K ++++++ + G + D I+ ILD + G Y LEVSSPGIDRP+ + Sbjct: 34 KAPTIRVYIDTEQG-IVFDDIAAAQAWINEILDEIDPFPGAYTLEVSSPGIDRPLRTRGH 92 Query: 109 FLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 F G V + + G ++G +E G Sbjct: 93 FEAAVGEQVYATCSEPVDGRSRFSGTLLGVAEDG 126 >gi|205373421|ref|ZP_03226225.1| hypothetical protein Bcoam_09030 [Bacillus coahuilensis m4-4] Length = 112 Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 44/67 (65%), Gaps = 1/67 (1%) Query: 51 LLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFL 110 ++L++++++D G + + +C +S+ + +D + I+ +Y LEVSSPG +RP+ ++ DF Sbjct: 1 MVLRVYIDKDAG-VDIEECGIVSERLGEKIDELDPIQHNYFLEVSSPGAERPLKKEKDFE 59 Query: 111 RWNGHVV 117 + G V Sbjct: 60 KAVGKQV 66 >gi|328479977|gb|EGF49014.1| hypothetical protein AAULR_12702 [Lactobacillus rhamnosus MTCC 5462] Length = 119 Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%) Query: 62 GNMTLRDCEELSQAISPILDVENI--IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 G +TL +C +S+A+S LD N I Y LEVSSPG +RP+ R++D+ + G + Sbjct: 7 GGITLDECVLVSEALSEQLDAINPDPIPQQYFLEVSSPGAERPLKRETDYEQAIGDYI 64 >gi|269219600|ref|ZP_06163454.1| conserved hypothetical protein [Actinomyces sp. oral taxon 848 str. F0332] gi|269210842|gb|EEZ77182.1| conserved hypothetical protein [Actinomyces sp. oral taxon 848 str. F0332] Length = 160 Score = 43.5 bits (101), Expect = 0.013, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 6/102 (5%) Query: 49 KNLLLQIFVE--RDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRK 106 KNL++++ V+ G + E+S+ IS LD ++++G Y LEVS+PG +R + Sbjct: 30 KNLVVKVVVDLPSGPGGVDSDRLTEVSRDISQRLDDVDLVQGAYTLEVSTPGAERSLREP 89 Query: 107 SDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKE 148 F R G +V V D + ++G+++ S ++ E Sbjct: 90 RHFSRAQGRLVELRTV----DGKSVVGRLVSLSGDALNVQVE 127 >gi|293192165|ref|ZP_06609377.1| hypothetical protein HMPREF0970_01722 [Actinomyces odontolyticus F0309] gi|292820361|gb|EFF79353.1| hypothetical protein HMPREF0970_01722 [Actinomyces odontolyticus F0309] Length = 156 Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 14/123 (11%) Query: 52 LLQIFVERD--DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDF 109 LL++ VE G + E+S+A+S LD + I+G Y LEVS+PG +R + + + Sbjct: 38 LLRVIVEAPIGAGGIDSDTLAEVSRAVSKALDAADPIDGEYLLEVSTPGAERELTKVGHW 97 Query: 110 LRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGE------KDMNELQIAIS 163 +R G +V I L +G + G+++ ET ++ + GE +DM + + + Sbjct: 98 MRQIGRLV--RIKLRAG--GYVSGRVVAADETSATIDVD--GETTIIDYQDMRKARSRVD 151 Query: 164 FDS 166 F S Sbjct: 152 FGS 154 >gi|94985334|ref|YP_604698.1| hypothetical protein Dgeo_1233 [Deinococcus geothermalis DSM 11300] gi|259585747|sp|Q1IZ05|RIMP_DEIGD RecName: Full=Ribosome maturation factor rimP gi|94555615|gb|ABF45529.1| protein of unknown function DUF150 [Deinococcus geothermalis DSM 11300] Length = 155 Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust. Identities = 28/118 (23%), Positives = 58/118 (49%), Gaps = 11/118 (9%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVER-DDGNMTLRDCEELSQAISPI 79 A ++ ++ + V++ + + + + + + ++ I ++R D+ +T+ D E S+A+ Sbjct: 9 APNLRTLAEGVLQPLGYEVLDVQVQNPGRRPIVVIRMDRLDEQPVTVEDLETASRAVGAE 68 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDF---------LRWNGHVVACEIVLSSGDK 128 D + I G YRLE+ SPG RP+ R + +R +GH I G++ Sbjct: 69 FDRVDPIAGEYRLELESPGAKRPLTRARHYERMLGLKARVRGDGHSFTAPIKAVDGEQ 126 >gi|303233384|ref|ZP_07320053.1| conserved hypothetical protein [Atopobium vaginae PB189-T1-4] gi|302480513|gb|EFL43604.1| conserved hypothetical protein [Atopobium vaginae PB189-T1-4] Length = 157 Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 50/89 (56%), Gaps = 4/89 (4%) Query: 52 LLQIFVERDDGNMTLRDCEELSQA---ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSD 108 ++++ ++ D ++ +E++Q I+ LD + IEG Y LEVSSPG+ RP+ + D Sbjct: 38 IIRLRIDNADESLPTISLDEVAQQHEWINATLDEMDPIEGSYTLEVSSPGLARPLRKHHD 97 Query: 109 FLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 F R+ V + + G +++ G++ G Sbjct: 98 FERFAHETVQLQTNNTEG-RKRFSGELCG 125 >gi|259501584|ref|ZP_05744486.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] gi|302191442|ref|ZP_07267696.1| hypothetical protein LineA_05504 [Lactobacillus iners AB-1] gi|309807190|ref|ZP_07701164.1| conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] gi|259167102|gb|EEW51597.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] gi|308166411|gb|EFO68616.1| conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] Length = 158 Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 52/93 (55%), Gaps = 3/93 (3%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVENI- 85 VI P++ V I ++E N L+I+V+R+ + + + LS+++S LD+ N Sbjct: 11 VITPLVHARGDELVDIEYVKENNQNYLRIYVDREPNGIDIDEIATLSESVSEQLDLINPD 70 Query: 86 -IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + Y LE+SSPG++RP+ ++D+ + V Sbjct: 71 PLPDPYILELSSPGVERPIKTEADWCKAKNDYV 103 >gi|256396851|ref|YP_003118415.1| hypothetical protein Caci_7750 [Catenulispora acidiphila DSM 44928] gi|256363077|gb|ACU76574.1| protein of unknown function DUF150 [Catenulispora acidiphila DSM 44928] Length = 203 Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust. Identities = 33/146 (22%), Positives = 69/146 (47%), Gaps = 10/146 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 G A + ++++PV+ + + + + V D ++L ++++ +S + Sbjct: 8 GPADRLQALLEPVVAAAGYDLESVRVSQVARRRRVEVVVDGDDGVSLDAVSDITRVVSDV 67 Query: 80 LDVENII----EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + E Y LEV SPG DRP+ + R G +V ++ + GD + G++ Sbjct: 68 LDAPEGVAVMGEQPYVLEVGSPGTDRPLTLPKHWRRAKGRLVRA-LLRNGGD---VTGRV 123 Query: 136 MGTSETGFFLE--KEKRGEKDMNELQ 159 + + + G LE +K+G+ + L+ Sbjct: 124 LDSDDEGVLLEVPGKKKGQTEERRLE 149 >gi|315653431|ref|ZP_07906353.1| protein of hypothetical function DUF150 [Lactobacillus iners ATCC 55195] gi|315489356|gb|EFU78996.1| protein of hypothetical function DUF150 [Lactobacillus iners ATCC 55195] Length = 158 Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 52/93 (55%), Gaps = 3/93 (3%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVENI- 85 VI P++ V I ++E N L+I+V+R+ + + + LS+++S LD+ N Sbjct: 11 VITPLVHARGDELVDIEYVKENNQNYLRIYVDREPNGIDIDEIATLSESVSEQLDLINPD 70 Query: 86 -IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + Y LE+SSPG++RP+ ++D+ + V Sbjct: 71 PLPDPYILELSSPGVERPIKTEADWCKAKNDYV 103 >gi|313676537|ref|YP_004054533.1| hypothetical protein Ftrac_2447 [Marivirga tractuosa DSM 4126] gi|312943235|gb|ADR22425.1| protein of unknown function DUF150 [Marivirga tractuosa DSM 4126] Length = 157 Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust. Identities = 26/102 (25%), Positives = 54/102 (52%), Gaps = 1/102 (0%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 +GL I + + +I E + V I + L + + ++ D+G +++ C +S+ ++ Sbjct: 2 IGLDEKIKAYLGEIITEPQYFIVDIVISGNDKLKIVVLLDGDEG-VSIDYCASVSRQLAH 60 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 ++ + ++E Y LEVSSPG+D P+ +L+ G V + Sbjct: 61 RMEEDEVLEKAYVLEVSSPGLDHPLTNLRQYLKNIGRKVKVD 102 >gi|111225122|ref|YP_715916.1| hypothetical protein FRAAL5763 [Frankia alni ACN14a] gi|111152654|emb|CAJ64395.1| Hypothetical protein FRAAL5763 [Frankia alni ACN14a] Length = 197 Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 9/90 (10%) Query: 61 DGNMTLRDCEELSQAISPILDV-----ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGH 115 DG + L E S+ +S +LD E + G Y LEV+SPG+DRP+ + R G Sbjct: 4 DGGIDLDAVAEASRVVSDLLDAAEAAGEGLSAGPYVLEVTSPGVDRPLTAPRHWRRAVGR 63 Query: 116 VVACEIVLSSGDKQKLIGKIMGTSETGFFL 145 +V + S+G + L G+++ E G L Sbjct: 64 LVT--VRDSAG--EVLSGRVLSADEAGADL 89 >gi|312873335|ref|ZP_07733388.1| conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d] gi|311091125|gb|EFQ49516.1| conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d] Length = 158 Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 51/87 (58%), Gaps = 3/87 (3%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVENI- 85 VI P++ V I ++E N L+I+V+R+ + + + LS+++S LD+ N Sbjct: 11 VITPLVHARGDELVDIEYVKENNQNYLRIYVDREPNGIDIDEIATLSESVSEQLDLINPD 70 Query: 86 -IEGHYRLEVSSPGIDRPMVRKSDFLR 111 + Y LE+SSPG++RP+ ++D+ + Sbjct: 71 PLPDPYILELSSPGVERPIKTEADWCK 97 >gi|284036132|ref|YP_003386062.1| hypothetical protein Slin_1213 [Spirosoma linguale DSM 74] gi|283815425|gb|ADB37263.1| protein of unknown function DUF150 [Spirosoma linguale DSM 74] Length = 170 Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 2/93 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD-DGNMTLRDCEELSQAISPILDVE 83 I+ ++QP ++ F V I + + L++ + D D +T+ DC ++S+ + +D Sbjct: 7 ITELLQPYLKNDLFYIVDIQVAGRQGGRLKVTILLDSDAGITIDDCADISRRLGGQMDEM 66 Query: 84 NII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGH 115 N + + LE+SSPG+D P+ F+R G Sbjct: 67 NFFGDSPFTLEISSPGVDYPLTFSRQFVRNVGR 99 >gi|312139327|ref|YP_004006663.1| hypothetical protein REQ_19140 [Rhodococcus equi 103S] gi|311888666|emb|CBH47978.1| conserved hypothetical protein [Rhodococcus equi 103S] Length = 181 Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 7/110 (6%) Query: 53 LQIFVERDDGNMTLRDCEELSQAISPILDV-ENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 +++ V+ D G + L + LS IS + D + E Y LEV+SPGIDRP+ + R Sbjct: 30 VRVMVDSDSG-LELDEVARLSHVISDVFDAASDFGESPYTLEVTSPGIDRPLTEGRHWRR 88 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIA 161 G V E+ ++ + G++ ++ G L + +G + +++A Sbjct: 89 AQGRKVLVELA-----EESVTGRVGRLTDGGVDLVVKAKGGPVVRRVELA 133 >gi|317121852|ref|YP_004101855.1| hypothetical protein Tmar_1015 [Thermaerobacter marianensis DSM 12885] gi|315591832|gb|ADU51128.1| protein of unknown function DUF150 [Thermaerobacter marianensis DSM 12885] Length = 153 Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust. Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 9/128 (7%) Query: 47 EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRK 106 E + LQ V+R G +T+ +C SQA+ P+L ++ +EV SPG+DR + Sbjct: 33 EGRRWFLQCVVDRP-GGVTMDECAAFSQALDPVLAGVEGLDEDVVVEVMSPGLDRTLRND 91 Query: 107 SDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDS 166 +F + G V +++ +G++ G + + E+ + I D+ Sbjct: 92 REFDWFRGREVEVATFRPVEGRRRFVGRLEGLEDGDVVITDEEGAHR--------IPRDA 143 Query: 167 LLSARLIV 174 + A+L V Sbjct: 144 VAKAQLYV 151 >gi|296111950|ref|YP_003622332.1| hypothetical protein LKI_09120 [Leuconostoc kimchii IMSNU 11154] gi|295833482|gb|ADG41363.1| hypothetical protein LKI_09120 [Leuconostoc kimchii IMSNU 11154] Length = 158 Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust. Identities = 36/155 (23%), Positives = 76/155 (49%), Gaps = 16/155 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDG-NMTLRDCEELSQAISPILDV 82 I+ +I P++E+ +S E +L+I +++ + ++T+ D + +Q ++ +LD Sbjct: 9 ITVLITPIVEKRDKLLWDLSYTREGGQKVLRILLDKPNHESITMTDLTDFTQEVNELLDT 68 Query: 83 --ENIIEGHYRLEVSSPGIDRPMVRKSDFLRW---NGHVVACEIVLSSGDKQKLIGKIMG 137 + I Y L++SSPG DRP+++ F +W + V + ++ ++K G I Sbjct: 69 TDPDPIPEPYLLDISSPGADRPLIKPWHF-KWAQESEEEVLISLFVAKNGQKKWQGNISS 127 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ G L E ++ ++FD + A L Sbjct: 128 LTDDGLVLATEAD--------ELVLNFDEIAKAVL 154 >gi|25010486|ref|NP_734881.1| hypothetical protein gbs0413 [Streptococcus agalactiae NEM316] gi|50403657|sp|P62599|RIMP_STRA5 RecName: Full=Ribosome maturation factor rimP gi|50403658|sp|P62600|RIMP_STRA3 RecName: Full=Ribosome maturation factor rimP gi|23094839|emb|CAD46057.1| unknown [Streptococcus agalactiae NEM316] Length = 159 Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 21/159 (13%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK---NLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 ++ V+ P I+ F V + EK + +L I +++ G +T+ D +L+ +SP+LD Sbjct: 11 VTQVVTPAIQA-PFELVDVEY--EKMGGDYVLSILIDKP-GGITVEDTAQLTDVVSPLLD 66 Query: 82 V--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI-GKIM-- 136 + Y LEVSSPG++RP+ G + + S DK K+ G ++ Sbjct: 67 TIQPDPFPEQYMLEVSSPGLERPLKTAEALSNAVGSYINVSL-YKSIDKVKIFEGDLLSF 125 Query: 137 -GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G + T +++K + D I + ++ ARL V Sbjct: 126 DGETLTIDYMDKTRHKTVD-------IPYQTVAKARLAV 157 >gi|119717417|ref|YP_924382.1| hypothetical protein Noca_3193 [Nocardioides sp. JS614] gi|166988630|sp|A1SLL0|RIMP_NOCSJ RecName: Full=Ribosome maturation factor rimP gi|119538078|gb|ABL82695.1| protein of unknown function DUF150 [Nocardioides sp. JS614] Length = 175 Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 55/99 (55%), Gaps = 6/99 (6%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII-EGHYRLEVSSPGIDRPMVRKS 107 K +L++ V++D G +TL + E ++ ++ +LD ++ E Y LEV+S G+DRP+ Sbjct: 38 KRRILRVAVDKD-GGVTLDEVAEATREVNRVLDGSEVMGEQPYTLEVTSRGVDRPLTLPR 96 Query: 108 DFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE 146 + R G +V ++ D + G+I+ ++E L+ Sbjct: 97 HWRRNAGRLVK----VAFADGRAATGRILDSNEEQVTLD 131 >gi|309775436|ref|ZP_07670439.1| 15 kDa protein [Erysipelotrichaceae bacterium 3_1_53] gi|308916825|gb|EFP62562.1| 15 kDa protein [Erysipelotrichaceae bacterium 3_1_53] Length = 183 Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 33/57 (57%) Query: 47 EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPM 103 E K +LQ+ + DG+M + C S+ IS +LD ++I Y LEV SPG +R + Sbjct: 58 EGKMRILQVSIMHKDGSMDIDTCAAQSEKISAMLDELDLISSEYFLEVCSPGAEREL 114 >gi|325676663|ref|ZP_08156338.1| hypothetical protein HMPREF0724_14121 [Rhodococcus equi ATCC 33707] gi|325552518|gb|EGD22205.1| hypothetical protein HMPREF0724_14121 [Rhodococcus equi ATCC 33707] Length = 189 Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 7/110 (6%) Query: 53 LQIFVERDDGNMTLRDCEELSQAISPILDV-ENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 +++ V+ D G + L + LS IS + D + E Y LEV+SPGIDRP+ + R Sbjct: 38 VRVMVDSDSG-LELDEVARLSHVISDVFDAASDFGESPYTLEVTSPGIDRPLTEGRHWRR 96 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIA 161 G V E+ ++ + G++ ++ G L + +G + +++A Sbjct: 97 AQGRKVLVELA-----EESVTGRVGRLTDGGVDLVVKAKGGPVVRRVELA 141 >gi|329919854|ref|ZP_08276792.1| hypothetical protein HMPREF9210_0185 [Lactobacillus iners SPIN 1401G] gi|328936944|gb|EGG33374.1| hypothetical protein HMPREF9210_0185 [Lactobacillus iners SPIN 1401G] Length = 158 Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 52/93 (55%), Gaps = 3/93 (3%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVENI- 85 VI P++ V I ++E N L+I+V+R+ + + + LS+++S LD+ N Sbjct: 11 VITPLVHARGDELVDIEYVKENNQNYLRIYVDREPDGIDIDEIATLSESVSEQLDLINPD 70 Query: 86 -IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + Y LE+SSPG++RP+ ++D+ + V Sbjct: 71 PLPDPYILELSSPGVERPIKTEADWCKAKNDYV 103 >gi|325282975|ref|YP_004255516.1| Ribosome maturation factor rimP [Deinococcus proteolyticus MRP] gi|324314784|gb|ADY25899.1| Ribosome maturation factor rimP [Deinococcus proteolyticus MRP] Length = 150 Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 40/80 (50%) Query: 35 EMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEV 94 E VQ+ + +LL D+ +++ D E ++ +S LD + I G YRLEV Sbjct: 18 EYELLEVQMQNASGRPVLLVRIDRADEQPVSVDDIERATRRLSLWLDEADPIGGEYRLEV 77 Query: 95 SSPGIDRPMVRKSDFLRWNG 114 SPG RP++R F R G Sbjct: 78 ESPGAKRPLLRTRHFERMLG 97 >gi|120403302|ref|YP_953131.1| hypothetical protein Mvan_2311 [Mycobacterium vanbaalenii PYR-1] gi|259585796|sp|A1T7H5|RIMP_MYCVP RecName: Full=Ribosome maturation factor rimP gi|119956120|gb|ABM13125.1| protein of unknown function DUF150 [Mycobacterium vanbaalenii PYR-1] Length = 176 Score = 42.7 bits (99), Expect = 0.022, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 7/101 (6%) Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 D + L ELS+ S +LD + Y LEV+SPG+DRP+ + + R G + E Sbjct: 50 DHGLDLDSVAELSRIASELLD--GLDSAPYVLEVTSPGVDRPLTTEKHYRRARGRL--AE 105 Query: 121 IVLSSGDKQKLIGKIMGTSE-TGFFLEKEKRGEKDMNELQI 160 I L+ G L G+I G ++ T + +E R + E+ + Sbjct: 106 ITLTDG--SVLTGRIGGVADGTVGVVVREGRSNLSVREIAL 144 >gi|239907794|ref|YP_002954535.1| hypothetical protein DMR_31580 [Desulfovibrio magneticus RS-1] gi|239797660|dbj|BAH76649.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 189 Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust. Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 6/103 (5%) Query: 63 NMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV 122 +T+ +C +S+ + +L+V+ I Y LEVSSPG+ R L + G + ++ Sbjct: 58 GVTIDECARVSRHLGALLEVDEIFHNPYVLEVSSPGLSRRFFEAGQLLAYVGREIEAKLA 117 Query: 123 LSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFD 165 + +++ G + G S+ + D + +ISFD Sbjct: 118 VPREGRKRFKGILSGVSDQTVSM------TVDPGAKEFSISFD 154 >gi|325957050|ref|YP_004292462.1| ribosome maturation protein RimP [Lactobacillus acidophilus 30SC] gi|325333615|gb|ADZ07523.1| ribosome maturation protein RimP [Lactobacillus acidophilus 30SC] gi|327183773|gb|AEA32220.1| ribosome maturation protein RimP [Lactobacillus amylovorus GRL 1118] Length = 158 Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 62/125 (49%), Gaps = 3/125 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + V++P+I+E V + ++EK L+I+V+R+ + + + LS+ +S LD Sbjct: 8 VRPVVEPIIDEHGDMLVDMEYVKEKGQNYLRIYVDREPNGIDIDEIAALSELVSEKLDTI 67 Query: 84 NI--IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 N Y LE+SSPG +RP+ ++D+ + + + DK+ G + ++ Sbjct: 68 NPDPFPEPYVLELSSPGAERPIKTEADWKKALNDYIHIGLYQKIKDKKVYEGTLKSYNDE 127 Query: 142 GFFLE 146 LE Sbjct: 128 EIVLE 132 >gi|320334651|ref|YP_004171362.1| ribosome maturation factor rimP [Deinococcus maricopensis DSM 21211] gi|319755940|gb|ADV67697.1| Ribosome maturation factor rimP [Deinococcus maricopensis DSM 21211] Length = 147 Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 9/77 (11%) Query: 60 DDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDF---------L 110 D+ +T+ D E S+ + LD + I+G YRLE+ SPG RP+ R F + Sbjct: 41 DEQPVTVDDLETASKLLGLELDRTDPIKGEYRLELESPGSKRPLRRTRHFERMVGLKARV 100 Query: 111 RWNGHVVACEIVLSSGD 127 R GH I+ GD Sbjct: 101 RGEGHSFTAPILKVEGD 117 >gi|29829096|ref|NP_823730.1| hypothetical protein SAV_2554 [Streptomyces avermitilis MA-4680] gi|34223104|sp|Q82K50|RIMP_STRAW RecName: Full=Ribosome maturation factor rimP gi|29606202|dbj|BAC70265.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 169 Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 65/127 (51%), Gaps = 8/127 (6%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII-EGHYRLEVSSPGIDRPMVRKS 107 + +L++ V+ D+G L ++S+A+S LD + + EG Y LEV +PG +R + Sbjct: 34 RKRVLRVVVDSDEG-ADLDAIADVSRALSAKLDETDAMGEGEYTLEVGTPGAERALTEHR 92 Query: 108 DFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSL 167 ++R +V + L+ GD +L+ +I+ + G LE G K ++F+ + Sbjct: 93 HYVRAVDRLVRFQ--LTEGD--ELVARILTVDDAGLDLEVP--GVKGRKATTRRLAFEDI 146 Query: 168 LSARLIV 174 AR+ V Sbjct: 147 AKARVQV 153 >gi|225012170|ref|ZP_03702607.1| protein of unknown function DUF150 [Flavobacteria bacterium MS024-2A] gi|225003725|gb|EEG41698.1| protein of unknown function DUF150 [Flavobacteria bacterium MS024-2A] Length = 154 Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 30/161 (18%) Query: 36 MSFRSVQISLLE-----EKNLLL-----------QIFVERDDGNMTLRDCEELSQAISPI 79 M+FRS SLLE +++L L I ++ D G +TL+DC +S+AI Sbjct: 1 MNFRSKVESLLEAALEEDQSLFLIDLKIGSDNSIHITLDGDQG-VTLKDCVNVSRAIEHN 59 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD E E + LEV+S G+ P++ +++ G + E S + L G + Sbjct: 60 LDRE---EYDFSLEVASAGVGSPLLNSRQYIKNIGRKLRVE----SMEVSTLEGTLTAAD 112 Query: 140 ETGFFLEKEKRGEKDMNELQIAI------SFDSLLSARLIV 174 F LE ++R K + + ++ + S+D + A+++V Sbjct: 113 NQAFTLEWKQREAKPVGKGKVTVTKQKTLSYDQISIAKVLV 153 >gi|296269041|ref|YP_003651673.1| hypothetical protein Tbis_1058 [Thermobispora bispora DSM 43833] gi|296091828|gb|ADG87780.1| protein of unknown function DUF150 [Thermobispora bispora DSM 43833] Length = 171 Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 65/129 (50%), Gaps = 5/129 (3%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD- 81 G + ++ PV+E +++ + V DG +T+ + ++S+++S LD Sbjct: 8 GRLVELLGPVVEAKGLDLEDVTITSAGRRRIVRVVVDRDGGVTVDEIADVSRSVSDRLDE 67 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 V+ + + Y LEV+SPG+DRP+ + + R G +V VL G + G+I +ET Sbjct: 68 VDVLGDAPYVLEVTSPGVDRPLTEQRHWRRARGLLVKA--VLRDG--GTVEGRITDVTET 123 Query: 142 GFFLEKEKR 150 L+ +R Sbjct: 124 EVELDGTRR 132 >gi|148240412|ref|YP_001225799.1| hypothetical protein SynWH7803_2076 [Synechococcus sp. WH 7803] gi|166980273|sp|A5GNI7|RIMP_SYNPW RecName: Full=Ribosome maturation factor rimP gi|147848951|emb|CAK24502.1| Conserved hypothetical protein [Synechococcus sp. WH 7803] Length = 155 Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 2/118 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDG-NMTLRDCEELSQAISP 78 L DI+ V F V+I +L + + +Q+ + R DG +++L DC S + Sbjct: 5 LLPDITPVAASTAAAHGFELVEIQILTHLQPMTVQVQIRRTDGSDVSLDDCAGFSGPMGE 64 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 L+ + ++ Y LE+SSPGI + DF + + V G +Q+ G ++ Sbjct: 65 ALESQALLTEAYVLEISSPGIGEQLQSDRDFQTFRSYPVEVLYRDDEGREQRQQGSLL 122 >gi|227904179|ref|ZP_04021984.1| protein of hypothetical function DUF150 [Lactobacillus acidophilus ATCC 4796] gi|227868198|gb|EEJ75619.1| protein of hypothetical function DUF150 [Lactobacillus acidophilus ATCC 4796] Length = 172 Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 63/125 (50%), Gaps = 3/125 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 + V++ +I+E V + ++EK+ L+I+V+R+ + + + LS+ IS LD Sbjct: 22 VRPVVESIIDEHGDMLVNMEYIKEKSQNYLRIYVDREPNGIDIDEIAVLSELISEKLDTL 81 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + + Y LE+SSPG +RP+ K+D+ + + + DK+ G + ++ Sbjct: 82 DPDPLPDPYVLELSSPGAERPIKTKADWEKALNDYIHVGLYQKIEDKKMYEGTLKSYNDD 141 Query: 142 GFFLE 146 LE Sbjct: 142 EIILE 146 >gi|229815166|ref|ZP_04445503.1| hypothetical protein COLINT_02212 [Collinsella intestinalis DSM 13280] gi|229809396|gb|EEP45161.1| hypothetical protein COLINT_02212 [Collinsella intestinalis DSM 13280] Length = 164 Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 8/97 (8%) Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S ++ + I Y LEVSSPG+ RP+ R SDF R+ G V G ++ G I Sbjct: 63 VSETVEALDPISSAYTLEVSSPGMKRPLRRPSDFARFVGEDVELTTTAMEG-RRSYKGAI 121 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ ++ E E + I+FD + L Sbjct: 122 AAATDACVTIQPE-------GEDAVTIAFDDVKKCAL 151 >gi|283769340|ref|ZP_06342239.1| conserved hypothetical protein [Bulleidia extructa W1219] gi|283103997|gb|EFC05381.1| conserved hypothetical protein [Bulleidia extructa W1219] Length = 150 Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 M +I +++ P +++ F +++ + K LQI V G L C + S+ IS Sbjct: 1 MNRIDEIKALVVPALKKQGFEVEEVTWIS-KERTLQISVHNLQGETDLEACAKASECISD 59 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPM 103 +LD +++ Y LEV SPG +R + Sbjct: 60 MLDENDLMLEGYTLEVCSPGAEREI 84 >gi|311898672|dbj|BAJ31080.1| hypothetical protein KSE_53040 [Kitasatospora setae KM-6054] Length = 184 Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 23/144 (15%) Query: 4 THFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN 63 T L + EP + D GL D+ V V + S R VQI + DG Sbjct: 6 TDRLRALLEP-LAADAGL--DLEEV--KVTQAGSRRQVQIDVDA-------------DGG 47 Query: 64 MTLRDCEELSQAISPILDVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV 122 + L E S+ +S LD ++ E Y LEV SPG +RP+ + R G + A ++V Sbjct: 48 VDLDAVAEFSRLVSRALDDSALMGETPYVLEVGSPGAERPLSEPRHWRRAVGRLAAVKLV 107 Query: 123 LSSGDKQKLIGKIMGTSETGFFLE 146 D +L +++ + E G +E Sbjct: 108 ----DGAELTARVLESDEDGALVE 127 >gi|22536560|ref|NP_687411.1| hypothetical protein SAG0377 [Streptococcus agalactiae 2603V/R] gi|76786908|ref|YP_329097.1| hypothetical protein SAK_0451 [Streptococcus agalactiae A909] gi|76798054|ref|ZP_00780311.1| UPF0090 protein SP0552 (SP14.3) [Streptococcus agalactiae 18RS21] gi|77406351|ref|ZP_00783413.1| conserved hypotehtical protein [Streptococcus agalactiae H36B] gi|77408760|ref|ZP_00785490.1| conserved hypotehtical protein [Streptococcus agalactiae COH1] gi|77411665|ref|ZP_00788005.1| conserved hypotehtical protein [Streptococcus agalactiae CJB111] gi|77414448|ref|ZP_00790599.1| conserved hypotehtical protein [Streptococcus agalactiae 515] gi|91208361|sp|Q3K306|RIMP_STRA1 RecName: Full=Ribosome maturation factor rimP gi|22533394|gb|AAM99283.1|AE014208_23 conserved hypothetical protein [Streptococcus agalactiae 2603V/R] gi|76561965|gb|ABA44549.1| conserved hypothetical protein [Streptococcus agalactiae A909] gi|76586613|gb|EAO63114.1| UPF0090 protein SP0552 (SP14.3) [Streptococcus agalactiae 18RS21] gi|77159493|gb|EAO70653.1| conserved hypotehtical protein [Streptococcus agalactiae 515] gi|77162309|gb|EAO73280.1| conserved hypotehtical protein [Streptococcus agalactiae CJB111] gi|77172605|gb|EAO75744.1| conserved hypotehtical protein [Streptococcus agalactiae COH1] gi|77175020|gb|EAO77827.1| conserved hypotehtical protein [Streptococcus agalactiae H36B] Length = 127 Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 3/56 (5%) Query: 50 NLLLQIFVERDDGNMTLRDCEELSQAISPILDV--ENIIEGHYRLEVSSPGIDRPM 103 + +L I +++ G +T+ D +L+ +SP+LD + Y LEVSSPG++RP+ Sbjct: 4 DYVLSILIDKP-GGITVEDTAQLTDVVSPLLDTIQPDPFPEQYMLEVSSPGLERPL 58 >gi|318042327|ref|ZP_07974283.1| hypothetical protein SCB01_11489 [Synechococcus sp. CB0101] Length = 157 Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 4/101 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK---NLLLQIFVERDDGNMTLRDCEELSQAIS 77 L D+ + V + F+ + LL + LL+Q+ + D G+++L +C S + Sbjct: 5 LIPDLERLASQVAADAGFQVCGVQLLTHRIPMTLLVQLRLA-DGGDVSLDNCASFSGVLG 63 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVA 118 L+ +IE Y LE+SSPGI + DF + G V Sbjct: 64 EALEAAALIEDAYVLEISSPGIAETLNDDRDFRSFRGFPVC 104 >gi|315038576|ref|YP_004032144.1| hypothetical protein LA2_07130 [Lactobacillus amylovorus GRL 1112] gi|312276709|gb|ADQ59349.1| hypothetical protein LA2_07130 [Lactobacillus amylovorus GRL 1112] Length = 158 Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 62/125 (49%), Gaps = 3/125 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + V++P+I+E V + ++EK L+I+V+R+ + + + LS+ +S LD Sbjct: 8 VRPVVEPIIDEHGDMLVDMEYVKEKGQNYLRIYVDREPNGIDIDEIAALSELVSEKLDTI 67 Query: 84 NI--IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 N Y LE+SSPG +RP+ ++D+ + + + DK+ G + ++ Sbjct: 68 NPDPFPEPYVLELSSPGAERPIKTEADWKKALNDYIHIGLYQKIMDKKVYEGTLKSYNDE 127 Query: 142 GFFLE 146 LE Sbjct: 128 EIVLE 132 >gi|116328715|ref|YP_798435.1| hypothetical protein LBL_2089 [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330627|ref|YP_800345.1| hypothetical protein LBJ_0944 [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122281618|sp|Q04U33|RIMP_LEPBJ RecName: Full=Ribosome maturation factor rimP gi|122283500|sp|Q04ZJ3|RIMP_LEPBL RecName: Full=Ribosome maturation factor rimP gi|116121459|gb|ABJ79502.1| Conserved hypothetical protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124316|gb|ABJ75587.1| Conserved hypothetical protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 162 Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 20/124 (16%) Query: 62 GNMTLRDCEELSQA-------ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNG 114 G+++L +CE++S+ ISP LD + L+VSS G +R + D R+ G Sbjct: 48 GSVSLLECEQVSRKLKEELERISPDLD--------FTLKVSSAGAERKLHLPEDIDRFRG 99 Query: 115 HVVACEIVLSSGDKQKL---IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 + +V SG+ +K I +I+ FLEK ++G+K + Q ++ +L Sbjct: 100 --IPVRLVFRSGESEKNQEGIFRIVNRDGDQVFLEKFQKGKKSAVKKQTTLNLKDILKGN 157 Query: 172 LIVT 175 L V+ Sbjct: 158 LYVS 161 >gi|313897501|ref|ZP_07831044.1| conserved hypothetical protein [Clostridium sp. HGF2] gi|312957871|gb|EFR39496.1| conserved hypothetical protein [Clostridium sp. HGF2] Length = 155 Score = 42.0 bits (97), Expect = 0.038, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 31/52 (59%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPM 103 +LQ+ + DG+M + C S+ IS +LD ++I Y LEV SPG +R + Sbjct: 35 ILQVSIMHKDGSMDIDTCAAQSEKISTMLDEMDMIASEYFLEVCSPGAEREL 86 >gi|33862047|ref|NP_893608.1| hypothetical protein PMM1491 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|51316771|sp|Q7V002|RIMP_PROMP RecName: Full=Ribosome maturation factor rimP gi|33634265|emb|CAE19950.1| DUF150 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 155 Score = 42.0 bits (97), Expect = 0.038, Method: Compositional matrix adjust. Identities = 24/106 (22%), Positives = 52/106 (49%), Gaps = 2/106 (1%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQ--IFVERDDGNMTLRDCEELSQA 75 D ++ S++Q V +E + + + +L +N ++ I + + ++TL DC + Sbjct: 2 DKECKSNLESLLQGVAKEFNLKIHSLDILTNQNPIIVKIIICKTNKDDITLDDCSRFNNP 61 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 +++ N++ Y LE+SS G+ + + DF + G V E+ Sbjct: 62 AISVIENSNLLNCSYVLEISSQGVSDELTSERDFKTFKGFPVNVEL 107 >gi|84498574|ref|ZP_00997337.1| hypothetical protein JNB_20318 [Janibacter sp. HTCC2649] gi|84381107|gb|EAP96992.1| hypothetical protein JNB_20318 [Janibacter sp. HTCC2649] Length = 187 Score = 42.0 bits (97), Expect = 0.039, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 5/75 (6%) Query: 63 NMTLRDCEELSQAISPILDVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 +++L + + +S LD +++ E Y LEV+SPG+ RP+ S F R G +V Sbjct: 56 SLSLDEIASATHTVSDALDESDVLGEQPYTLEVTSPGVSRPLTAASHFRRNVGRLV---- 111 Query: 122 VLSSGDKQKLIGKIM 136 VL+ D + + G+I+ Sbjct: 112 VLTPQDGEPVTGRIV 126 >gi|260101366|ref|ZP_05751603.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] gi|260084818|gb|EEW68938.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] Length = 172 Score = 42.0 bits (97), Expect = 0.040, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 11/151 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 + VI+ +I+E V + ++EK L+I+V+R + + + LS+ +S LD Sbjct: 22 VRPVIETIIDEHGDMLVDMEYVKEKGQNYLRIYVDRQPNGIDIDEIAALSELVSEKLDTI 81 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + + Y LE+SSPG +RP+ ++D+ R V + DK+ G + + Sbjct: 82 DPDPLPDPYVLELSSPGAERPITTEADWKRALNDYVHIGLYQKIDDKKVYEGTLKYYNND 141 Query: 142 GFFLE-KEKRGEKDMN-------ELQIAISF 164 LE K+K K + +++ AI F Sbjct: 142 EIVLEVKDKTRRKKLTIPRKLIAKIRFAIEF 172 >gi|313901627|ref|ZP_07835064.1| protein of unknown function DUF150 [Thermaerobacter subterraneus DSM 13965] gi|313468108|gb|EFR63585.1| protein of unknown function DUF150 [Thermaerobacter subterraneus DSM 13965] Length = 153 Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust. Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 2/114 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ + +P+ E+ + + E LQ V+R+ G +T+ +C S+A+ P+L+ Sbjct: 10 VAQLAEPLAEQRGLVLLDVEYRREGGRWFLQCVVDRE-GGVTMDECAAFSEALDPVLEGV 68 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 + + +EV SPG+DR + +F + G V +++ G++ G Sbjct: 69 DGLAEDVVVEVMSPGLDRTLRNDREFAWFRGREVEVTTYRPVDGRRRFQGRLEG 122 >gi|226306116|ref|YP_002766076.1| hypothetical protein RER_26290 [Rhodococcus erythropolis PR4] gi|259586185|sp|C0ZYA2|RIMP_RHOE4 RecName: Full=Ribosome maturation factor rimP gi|226185233|dbj|BAH33337.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length = 206 Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILD-VENIIEGHYRLEVSSPGIDRPMVRKS 107 K+ ++I V+ D G + L E+S+ +S + D +E I E Y LEV+SPGIDRP+ + Sbjct: 34 KHSAVRIMVDSDAG-IELDAAAEISRLVSELFDSLEEIGETPYTLEVTSPGIDRPLTLER 92 Query: 108 DFLRWNGH 115 + R G Sbjct: 93 HWRRARGR 100 >gi|193214184|ref|YP_001995383.1| hypothetical protein Ctha_0465 [Chloroherpeton thalassium ATCC 35110] gi|259585751|sp|B3QUN0|RIMP_CHLT3 RecName: Full=Ribosome maturation factor rimP gi|193087661|gb|ACF12936.1| protein of unknown function DUF150 [Chloroherpeton thalassium ATCC 35110] Length = 182 Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust. Identities = 23/93 (24%), Positives = 52/93 (55%), Gaps = 5/93 (5%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILD----VENIIEGHYRLEVSSPGIDRPMVRKS 107 ++++F + D G +++ +C+ LS+ IS LD ++ ++ H++L VSSPG+ RP+ Sbjct: 47 IIEVFADTDSG-ISVENCKFLSKHISAELDASEEMQALLPRHFKLVVSSPGLSRPLTMNR 105 Query: 108 DFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + + G ++ + G+ + + G+ + E Sbjct: 106 QYKKNIGRLMQVTYQNADGEIKTIDGRFISLEE 138 >gi|123966904|ref|YP_001011985.1| hypothetical protein P9515_16711 [Prochlorococcus marinus str. MIT 9515] gi|166980184|sp|A2BYL7|RIMP_PROM5 RecName: Full=Ribosome maturation factor rimP gi|123201270|gb|ABM72878.1| DUF150 [Prochlorococcus marinus str. MIT 9515] Length = 155 Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust. Identities = 24/106 (22%), Positives = 56/106 (52%), Gaps = 2/106 (1%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN--LLLQIFVERDDGNMTLRDCEELSQA 75 D L ++ +++ V +E + + ++LL +N ++ I + ++ ++T+ DC + Sbjct: 2 DKELKNNLEILLEEVAKEFNLKVYSLNLLTNQNPIIIKIIIKKTNEEDITIEDCSRFNNP 61 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 S +++ N+++ Y LE+SS G+ + + DF + G V E+ Sbjct: 62 ASAVIENSNLLKCSYVLEISSQGVSDELTSERDFKTFKGFPVNVEL 107 >gi|281491259|ref|YP_003353239.1| hypothetical protein LLKF_0783 [Lactococcus lactis subsp. lactis KF147] gi|281375000|gb|ADA64518.1| Hypothetical protein LLKF_0783 [Lactococcus lactis subsp. lactis KF147] Length = 157 Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 50/90 (55%), Gaps = 4/90 (4%) Query: 50 NLLLQIFVERDDGNMTLRDCEELSQAISPILDV---ENIIEGHYRLEVSSPGIDRPMVRK 106 +++L I V+++ G + + + ELS+ ISP+LD + Y LEV+SPG +RP+ + Sbjct: 33 DMMLSILVDKE-GGIEIDETAELSEIISPLLDTISPDPFPTEGYLLEVASPGAERPLRKA 91 Query: 107 SDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 F G + ++ +++++ G ++ Sbjct: 92 EHFAGAVGEYIFVKLYQKINNEKEITGDLV 121 >gi|259645134|sp|A5GVG1|RIMP_SYNR3 RecName: Full=Ribosome maturation factor rimP Length = 155 Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 1/86 (1%) Query: 53 LQIFVERDDG-NMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 L + V + DG ++ L DC SQA L+ ++ G Y LE++SPG+ + + DF Sbjct: 38 LIVAVRKGDGSDVNLDDCASFSQAFGEALETGELLTGAYVLEITSPGLGDVLQQDRDFRS 97 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMG 137 + G V + G + + G ++G Sbjct: 98 FRGFPVCVRQRDAKGGEIQREGTLLG 123 >gi|58337538|ref|YP_194123.1| hypothetical protein LBA1260 [Lactobacillus acidophilus NCFM] gi|75357528|sp|Q5FJN2|RIMP_LACAC RecName: Full=Ribosome maturation factor rimP gi|58254855|gb|AAV43092.1| hypothetical protein LBA1260 [Lactobacillus acidophilus NCFM] Length = 158 Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 63/125 (50%), Gaps = 3/125 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 + V++ +I+E V + ++EK+ L+I+V+R+ + + + LS+ IS LD Sbjct: 8 VRPVVESIIDEHGDMLVNMEYIKEKSQNYLRIYVDREPNGIDIDEIAVLSELISEKLDTL 67 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + + Y LE+SSPG +RP+ K+D+ + + + DK+ G + ++ Sbjct: 68 DPDPLPDPYVLELSSPGAERPIKTKADWEKALNDYIHVGLYQKIEDKKMYEGTLKSYNDD 127 Query: 142 GFFLE 146 LE Sbjct: 128 EIILE 132 >gi|226366089|ref|YP_002783872.1| hypothetical protein ROP_66800 [Rhodococcus opacus B4] gi|254806567|sp|C1B310|RIMP_RHOOB RecName: Full=Ribosome maturation factor rimP gi|226244579|dbj|BAH54927.1| hypothetical protein [Rhodococcus opacus B4] Length = 190 Score = 41.6 bits (96), Expect = 0.052, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 2/70 (2%) Query: 46 LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD-VENIIEGHYRLEVSSPGIDRPMV 104 L K+ ++I V+ D G + L LS IS + D V + E Y LEV+SPGIDRP+ Sbjct: 31 LAGKHSAVRIMVDSDAG-LELDAVANLSHEISEVFDSVSDFGESPYTLEVTSPGIDRPLT 89 Query: 105 RKSDFLRWNG 114 + + R G Sbjct: 90 HERHWRRARG 99 >gi|15672745|ref|NP_266919.1| hypothetical protein L173151 [Lactococcus lactis subsp. lactis Il1403] gi|34223137|sp|Q9CHG8|RIMP_LACLA RecName: Full=Ribosome maturation factor rimP gi|12723681|gb|AAK04861.1|AE006310_3 conserved hypothetical protein [Lactococcus lactis subsp. lactis Il1403] gi|326406314|gb|ADZ63385.1| Ribosome maturation factor [Lactococcus lactis subsp. lactis CV56] Length = 157 Score = 41.6 bits (96), Expect = 0.052, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 50/90 (55%), Gaps = 4/90 (4%) Query: 50 NLLLQIFVERDDGNMTLRDCEELSQAISPILDV---ENIIEGHYRLEVSSPGIDRPMVRK 106 +++L I V+++ G + + + ELS+ ISP+LD + Y LEV+SPG +RP+ + Sbjct: 33 DMMLSILVDKE-GGIEIDETAELSEIISPLLDTISPDPFPTEGYLLEVASPGAERPLRKA 91 Query: 107 SDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 F G + ++ +++++ G ++ Sbjct: 92 EHFAGAVGEYIFVKLYQKINNEKEITGDLV 121 >gi|124022126|ref|YP_001016433.1| hypothetical protein P9303_04161 [Prochlorococcus marinus str. MIT 9303] gi|167012912|sp|A2C6Q8|RIMP_PROM3 RecName: Full=Ribosome maturation factor rimP gi|123962412|gb|ABM77168.1| DUF150 [Prochlorococcus marinus str. MIT 9303] Length = 154 Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 51 LLLQIFVERDDG-NMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDF 109 + +Q+ + R DG +++L DC S ++ L+ + Y LE+SSPGI + DF Sbjct: 36 MTIQVQIRRKDGSDVSLDDCAHFSASMDEALEASQLFTEAYVLEISSPGIGDQLHSDQDF 95 Query: 110 LRWNGHVV 117 L + G V Sbjct: 96 LTFRGFPV 103 >gi|33863792|ref|NP_895352.1| hypothetical protein PMT1525 [Prochlorococcus marinus str. MIT 9313] gi|51316777|sp|Q7V5M7|RIMP_PROMM RecName: Full=Ribosome maturation factor rimP gi|33635375|emb|CAE21700.1| DUF150 [Prochlorococcus marinus str. MIT 9313] Length = 154 Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 51 LLLQIFVERDDG-NMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDF 109 + +Q+ + R DG +++L DC S ++ L+ + Y LE+SSPGI + DF Sbjct: 36 MTIQVQIRRKDGSDVSLDDCAHFSASMDEALEASQLFTEAYVLEISSPGIGDQLHSDQDF 95 Query: 110 LRWNGHVV 117 L + G V Sbjct: 96 LTFRGFPV 103 >gi|317484450|ref|ZP_07943363.1| hypothetical protein HMPREF0179_00714 [Bilophila wadsworthia 3_1_6] gi|316924310|gb|EFV45483.1| hypothetical protein HMPREF0179_00714 [Bilophila wadsworthia 3_1_6] Length = 205 Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust. Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 7/116 (6%) Query: 63 NMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV 122 +T+ C ELS+ LDVE+ ++ LE+SSPG+ RP + + G + E+V Sbjct: 65 GVTIDQCAELSRLAGLALDVEDPFATNWTLEISSPGLQRPFFKIDQLRNYVGREL--EVV 122 Query: 123 LSS-----GDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L++ ++K G + ++ F L K ++ I++ + A L+ Sbjct: 123 LAAPLDTWPGRKKFSGVLAAVADEEFTLSLPDTSRKAEEPEEVTIAWPFVRKATLV 178 >gi|125624586|ref|YP_001033069.1| hypothetical protein llmg_1797 [Lactococcus lactis subsp. cremoris MG1363] gi|166980233|sp|A2RM41|RIMP_LACLM RecName: Full=Ribosome maturation factor rimP gi|124493394|emb|CAL98368.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris MG1363] gi|300071377|gb|ADJ60777.1| hypothetical protein LLNZ_09255 [Lactococcus lactis subsp. cremoris NZ9000] Length = 157 Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 4/90 (4%) Query: 50 NLLLQIFVERDDGNMTLRDCEELSQAISPILDV---ENIIEGHYRLEVSSPGIDRPMVRK 106 +++L I V+++ G + + + ELS+ ISP+LD + Y LEV+SPG +RP+ + Sbjct: 33 DMMLSILVDKE-GGIEIDETAELSELISPLLDTISPDPFPTEGYLLEVASPGAERPLRKA 91 Query: 107 SDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 F G + ++ ++++ G ++ Sbjct: 92 EHFAGAVGEYIFVKLYQKINNEKEFTGDLV 121 >gi|116511572|ref|YP_808788.1| hypothetical protein LACR_0813 [Lactococcus lactis subsp. cremoris SK11] gi|122940261|sp|Q030K6|RIMP_LACLS RecName: Full=Ribosome maturation factor rimP gi|116107226|gb|ABJ72366.1| hypothetical protein LACR_0813 [Lactococcus lactis subsp. cremoris SK11] Length = 157 Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 4/90 (4%) Query: 50 NLLLQIFVERDDGNMTLRDCEELSQAISPILDV---ENIIEGHYRLEVSSPGIDRPMVRK 106 +++L I V+++ G + + + ELS+ ISP+LD + Y LEV+SPG +RP+ + Sbjct: 33 DMMLSILVDKE-GGIEIDETAELSELISPLLDTISPDPFPTEGYLLEVASPGAERPLRKA 91 Query: 107 SDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 F G + ++ ++++ G ++ Sbjct: 92 EHFAGAVGEYIFVKLYQKINNEKEFTGDLV 121 >gi|297571192|ref|YP_003696966.1| hypothetical protein Arch_0611 [Arcanobacterium haemolyticum DSM 20595] gi|296931539|gb|ADH92347.1| protein of unknown function DUF150 [Arcanobacterium haemolyticum DSM 20595] Length = 156 Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 61/105 (58%), Gaps = 5/105 (4%) Query: 21 LAGDISSVIQPVIEE--MSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCE--ELSQAI 76 ++ I+ ++ PV++E + +V++ + K+ ++++ V+ G + + ++S+A+ Sbjct: 5 VSAQIAQLLDPVVQESGLWLETVRV-VGAGKHTVVRVTVDLPSGPGGVDSTQLMDVSRAV 63 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 S +LD ++ I+G Y LEVS+PG R + + F R G VA ++ Sbjct: 64 SVVLDEKDPIKGAYTLEVSTPGATRELSEERHFSRAIGRKVAFQL 108 >gi|319744371|gb|EFV96731.1| hypothetical protein containing DUF150 [Streptococcus agalactiae ATCC 13813] Length = 127 Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 3/56 (5%) Query: 50 NLLLQIFVERDDGNMTLRDCEELSQAISPILDV--ENIIEGHYRLEVSSPGIDRPM 103 + +L I +++ G +T+ D +L+ +SP+LD + Y LEVSSPG++RP+ Sbjct: 4 DYVLSILIDKP-GGITVEDTVQLTDVVSPLLDTIQPDPFPEQYMLEVSSPGLERPL 58 >gi|148243066|ref|YP_001228223.1| hypothetical protein SynRCC307_1967 [Synechococcus sp. RCC307] gi|147851376|emb|CAK28870.1| Conserved hypothetical protein [Synechococcus sp. RCC307] Length = 185 Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 1/86 (1%) Query: 53 LQIFVERDDG-NMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 L + V + DG ++ L DC SQA L+ ++ G Y LE++SPG+ + + DF Sbjct: 68 LIVAVRKGDGSDVNLDDCASFSQAFGEALETGELLTGAYVLEITSPGLGDVLQQDRDFRS 127 Query: 112 WNGHVVACEIVLSSGDKQKLIGKIMG 137 + G V + G + + G ++G Sbjct: 128 FRGFPVCVRQRDAKGGEIQREGTLLG 153 >gi|229491457|ref|ZP_04385281.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|229321742|gb|EEN87539.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length = 206 Score = 41.2 bits (95), Expect = 0.066, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILD-VENIIEGHYRLEVSSPGIDRPMVRKS 107 K+ ++I V+ D G + L E+S+ +S + D +E I E Y LEV+SPGIDRP+ Sbjct: 34 KHSAVRIMVDSDAG-IELDAAAEISRLVSELFDTLEEIGETPYTLEVTSPGIDRPLTLDR 92 Query: 108 DFLRWNGH 115 + R G Sbjct: 93 HWRRARGR 100 >gi|220912194|ref|YP_002487503.1| hypothetical protein Achl_1424 [Arthrobacter chlorophenolicus A6] gi|219859072|gb|ACL39414.1| protein of unknown function DUF150 [Arthrobacter chlorophenolicus A6] Length = 222 Score = 41.2 bits (95), Expect = 0.068, Method: Compositional matrix adjust. Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 8/119 (6%) Query: 58 ERDDGNMTLRDCEELSQAISPILDVENIIEGH-YRLEVSSPGIDRPMVRKSDFLRWNGHV 116 + + G ++L ++S+ +S LD + + Y LEVSSPG+ RP+ + R G + Sbjct: 85 QEETGGVSLDVIADISKVLSDALDNDPGADTRPYDLEVSSPGVGRPLTEPRHWHRAKGRI 144 Query: 117 VACEIVLSSGDKQKLIGKIMGTSETGFFLEKE---KRGEKDMNELQIAISFDSLLSARL 172 +++ + + G+I + G L E K+G K + + FD + + ++ Sbjct: 145 ATVKVIQG----ENVTGRIQSVDDGGVTLVPEIAVKKGMKPKQGDPVKLPFDRIRTGKV 199 >gi|300812571|ref|ZP_07092988.1| conserved hypothetical protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496444|gb|EFK31549.1| conserved hypothetical protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 158 Score = 41.2 bits (95), Expect = 0.069, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 3/96 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 I I+PVI V + ++EK+ L+I+V++ + + ELS+ + LD Sbjct: 8 IQEAIEPVIIGHDCELVDLEYVKEKSQDYLRIYVDKQPNGIDIETIAELSELVGEKLDSM 67 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + + Y LE+SSPG++RP+ ++ D+ + G + Sbjct: 68 QPDPLPDPYILELSSPGLERPIKKEQDWEKAKGQYI 103 >gi|241895993|ref|ZP_04783289.1| hypothetical protein of function DUF150 [Weissella paramesenteroides ATCC 33313] gi|241870724|gb|EER74475.1| hypothetical protein of function DUF150 [Weissella paramesenteroides ATCC 33313] Length = 235 Score = 41.2 bits (95), Expect = 0.069, Method: Compositional matrix adjust. Identities = 37/169 (21%), Positives = 87/169 (51%), Gaps = 13/169 (7%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKN--LLLQIFVERDDGNMTLRDCEELSQAISPILD 81 ++ ++++P++ + F + L E+++ +L++ V+R DG + + D L++ IS LD Sbjct: 14 NVQAILKPILAKKGFDLWDV-LYEKQDSDFVLRVLVDRVDGEINMDDLVMLTEVISDELD 72 Query: 82 V--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS--GDKQKLIGKIMG 137 + + Y L+VSSPG DR + + +F+ G + E++L++ +K G+++ Sbjct: 73 MITPDPFPQAYLLDVSSPGADRELQQPGNFVWAVGKFI--EVILNNPVAGLEKFTGQLVS 130 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNY 186 + ++ + + + I I D++ A L V+ + + + +Y Sbjct: 131 FLDDKLTIDVALKTKHQL----IEIDLDNIQKANLSVSQDRILTTEEDY 175 >gi|259585703|sp|B8HG52|RIMP_ARTCA RecName: Full=Ribosome maturation factor rimP Length = 205 Score = 41.2 bits (95), Expect = 0.070, Method: Compositional matrix adjust. Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 8/115 (6%) Query: 62 GNMTLRDCEELSQAISPILDVENIIEGH-YRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 G ++L ++S+ +S LD + + Y LEVSSPG+ RP+ + R G + + Sbjct: 72 GGVSLDVIADISKVLSDALDNDPGADTRPYDLEVSSPGVGRPLTEPRHWHRAKGRIATVK 131 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKE---KRGEKDMNELQIAISFDSLLSARL 172 ++ + + G+I + G L E K+G K + + FD + + ++ Sbjct: 132 VIQG----ENVTGRIQSVDDGGVTLVPEIAVKKGMKPKQGDPVKLPFDRIRTGKV 182 >gi|328465728|gb|EGF36932.1| ribosome maturation protein RimP [Lactobacillus helveticus MTCC 5463] Length = 158 Score = 41.2 bits (95), Expect = 0.079, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 11/151 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 + VI+ +I+E V + ++EK L+I+V+R + + + LS+ +S LD Sbjct: 8 VRPVIETIIDEHGDMLVDMEYVKEKGQNYLRIYVDRQPNGIDIDEIAALSELVSEKLDTI 67 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + + Y LE+SSPG +RP+ ++D+ R V + DK+ G + + Sbjct: 68 DPDPLPDPYVLELSSPGAERPITTEADWKRALNDYVHIGLYQKIDDKKVYEGTLKYYNND 127 Query: 142 GFFLE-KEKRGEKDMN-------ELQIAISF 164 LE K+K K + +++ AI F Sbjct: 128 EIVLEVKDKTRRKKLTIPRKLIAKIRFAIEF 158 >gi|312872031|ref|ZP_07732109.1| conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] gi|311092444|gb|EFQ50810.1| conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] Length = 148 Score = 41.2 bits (95), Expect = 0.080, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 3/90 (3%) Query: 31 PVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVENI--IE 87 P++ V I ++E N L+I+V+R+ + + + LS+++S LD+ N + Sbjct: 4 PLVHARGDELVDIEYVKENNQNYLRIYVDREPNGIDIDEIATLSESVSEQLDLINPDPLP 63 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 Y LE+SSPG++RP+ ++D+ + V Sbjct: 64 DPYILELSSPGVERPIKTEADWCKAKNDYV 93 >gi|312871843|ref|ZP_07731928.1| conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] gi|311092624|gb|EFQ50983.1| conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] Length = 146 Score = 41.2 bits (95), Expect = 0.080, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 3/90 (3%) Query: 31 PVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVENI--IE 87 P++ V I ++E N L+I+V+R+ + + + LS+++S LD+ N + Sbjct: 2 PLVHARGDELVDIEYVKENNQNYLRIYVDREPNGIDIDEIATLSESVSEQLDLINPDPLP 61 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 Y LE+SSPG++RP+ ++D+ + V Sbjct: 62 DPYILELSSPGVERPIKTEADWCKAKNDYV 91 >gi|309808386|ref|ZP_07702287.1| conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] gi|308168371|gb|EFO70488.1| conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] Length = 145 Score = 41.2 bits (95), Expect = 0.082, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 3/90 (3%) Query: 31 PVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVENI--IE 87 P++ V I ++E N L+I+V+R+ + + + LS+++S LD+ N + Sbjct: 1 PLVHARGDELVDIEYVKENNQNYLRIYVDREPNGIDIDEIATLSESVSEQLDLINPDPLP 60 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 Y LE+SSPG++RP+ ++D+ + V Sbjct: 61 DPYILELSSPGVERPIKTEADWCKAKNDYV 90 >gi|309804436|ref|ZP_07698504.1| conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] gi|308166249|gb|EFO68464.1| conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] Length = 115 Score = 41.2 bits (95), Expect = 0.082, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 3/84 (3%) Query: 31 PVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVENI--IE 87 P++ V I ++E N L+I+V+R+ + + + LS+++S LD+ N + Sbjct: 1 PLVHARGDELVDIEYVKENNQNYLRIYVDREPNGIDIDEIATLSESVSEQLDLINPDPLP 60 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLR 111 Y LE+SSPG++RP+ ++D+ + Sbjct: 61 DPYILELSSPGVERPIKTEADWCK 84 >gi|325912470|ref|ZP_08174863.1| hypothetical protein HMPREF0522_0261 [Lactobacillus iners UPII 143-D] gi|325475717|gb|EGC78890.1| hypothetical protein HMPREF0522_0261 [Lactobacillus iners UPII 143-D] Length = 145 Score = 40.8 bits (94), Expect = 0.086, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 3/90 (3%) Query: 31 PVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVENI--IE 87 P++ V I ++E N L+I+V+R+ + + + LS+++S LD+ N + Sbjct: 1 PLVHARGDELVDIEYVKENNQNYLRIYVDREPNGIDIDEIATLSESVSEQLDLINPDPLP 60 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 Y LE+SSPG++RP+ ++D+ + V Sbjct: 61 DPYILELSSPGVERPIKTEADWCKAKNDYV 90 >gi|110639789|ref|YP_679999.1| hypothetical protein CHU_3420 [Cytophaga hutchinsonii ATCC 33406] gi|122966504|sp|Q11PK7|RIMP_CYTH3 RecName: Full=Ribosome maturation factor rimP gi|110282470|gb|ABG60656.1| conserved hypothetical protein [Cytophaga hutchinsonii ATCC 33406] Length = 167 Score = 40.8 bits (94), Expect = 0.086, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 41/65 (63%), Gaps = 2/65 (3%) Query: 55 IFVERDDGNMTLRDCEELSQAISPILDVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWN 113 + +++D G + + +C E S+A+ +++ N+ + Y LEVSSPG+DRP++ + R Sbjct: 40 VILDKDSG-ILIDECGEFSRALGNLIEENNLFGDNAYVLEVSSPGMDRPLLVSRQYKRRI 98 Query: 114 GHVVA 118 G+ ++ Sbjct: 99 GNTLS 103 >gi|303248241|ref|ZP_07334504.1| protein of unknown function DUF150 [Desulfovibrio fructosovorans JJ] gi|302490379|gb|EFL50290.1| protein of unknown function DUF150 [Desulfovibrio fructosovorans JJ] Length = 180 Score = 40.8 bits (94), Expect = 0.088, Method: Compositional matrix adjust. Identities = 18/73 (24%), Positives = 37/73 (50%) Query: 63 NMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV 122 +T+ +C +S+ + +L++E++ G Y LEVSSPG R + G + ++ Sbjct: 58 GVTIDECATVSRHLGTLLEMEDLFHGPYVLEVSSPGFGRRFFSADQLPAYIGEAIEAKLA 117 Query: 123 LSSGDKQKLIGKI 135 +++ GK+ Sbjct: 118 APRDGRKRFRGKL 130 >gi|309809702|ref|ZP_07703557.1| conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] gi|325912543|ref|ZP_08174930.1| hypothetical protein HMPREF0523_0654 [Lactobacillus iners UPII 60-B] gi|308169982|gb|EFO72020.1| conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] gi|325478152|gb|EGC81277.1| hypothetical protein HMPREF0523_0654 [Lactobacillus iners UPII 60-B] Length = 145 Score = 40.8 bits (94), Expect = 0.093, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 3/84 (3%) Query: 31 PVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVENI--IE 87 P++ V I ++E N L+I+V+R+ + + + LS+++S LD+ N + Sbjct: 1 PLVHARGDELVDIEYVKENNQNYLRIYVDREPNGIDIDEIATLSESVSEQLDLINPDPLP 60 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLR 111 Y LE+SSPG++RP+ ++D+ + Sbjct: 61 DPYILELSSPGVERPIKTEADWCK 84 >gi|300173096|ref|YP_003772262.1| hypothetical protein LEGAS_0795 [Leuconostoc gasicomitatum LMG 18811] gi|299887475|emb|CBL91443.1| conserved hypothetical protein [Leuconostoc gasicomitatum LMG 18811] Length = 158 Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 17/128 (13%) Query: 52 LLQIFVERDDGN-MTLRDCEELSQAISPILDV--ENIIEGHYRLEVSSPGIDRPMVRKSD 108 +L+I +++ + +T+ D +Q ++ +LD + I Y L++SSPG DRP+ + Sbjct: 37 VLRILLDKPNHQFITMADLTAFTQEVNELLDTSDPDPIPEAYLLDISSPGADRPLKQPWH 96 Query: 109 FLRW----NGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISF 164 F +W N +++ V +G K K GKI ++ G L + GE I ++F Sbjct: 97 F-KWAQDGNENILMSLFVAKNGQK-KWQGKIKTLTDNGLVLLTD-HGE-------IILNF 146 Query: 165 DSLLSARL 172 D + A L Sbjct: 147 DEIAKAVL 154 >gi|227878820|ref|ZP_03996727.1| protein of hypothetical function DUF150 [Lactobacillus crispatus JV-V01] gi|227861568|gb|EEJ69180.1| protein of hypothetical function DUF150 [Lactobacillus crispatus JV-V01] Length = 172 Score = 40.8 bits (94), Expect = 0.100, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 3/88 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 + V++ +I+E V + ++EK L+I+V+R + + + LS+ +S LD Sbjct: 22 VRPVVETIIDEHGDMLVDMEYVKEKGQNYLRIYVDRQPNGIDIDEIAALSELVSEKLDAL 81 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDF 109 + + Y LE+SSPG +RP+ K+D+ Sbjct: 82 DPDPLPDPYVLELSSPGAERPIKTKADW 109 >gi|257791561|ref|YP_003182167.1| hypothetical protein Elen_1813 [Eggerthella lenta DSM 2243] gi|325833208|ref|ZP_08165714.1| hypothetical protein HMPREF9404_3885 [Eggerthella sp. HGA1] gi|257475458|gb|ACV55778.1| protein of unknown function DUF150 [Eggerthella lenta DSM 2243] gi|325485590|gb|EGC88058.1| hypothetical protein HMPREF9404_3885 [Eggerthella sp. HGA1] Length = 159 Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 7/70 (10%) Query: 48 EKNLLLQIFVERDDGNMTLRDCEELSQA---ISPILDVENIIEGHYRLEVSSPGIDRPMV 104 +K ++++++ DG +ELS A I+ ++D + G Y LEVSSPGIDRP+ Sbjct: 33 KKAPTIRVYIDTPDGV----SFDELSSAQAWINDLMDELDPFPGAYTLEVSSPGIDRPLR 88 Query: 105 RKSDFLRWNG 114 F R+ G Sbjct: 89 TAEHFARFVG 98 >gi|254482605|ref|ZP_05095844.1| conserved hypothetical protein [marine gamma proteobacterium HTCC2148] gi|214037296|gb|EEB77964.1| conserved hypothetical protein [marine gamma proteobacterium HTCC2148] Length = 90 Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 35/59 (59%) Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I G Y LEVSSPG+DR + + + + + G ++ + + ++K G + G Sbjct: 1 MLDVEDPITGEYTLEVSSPGMDRLLFQLTQYPAYVGEIIELRLRSAFEGRRKFKGVLKG 59 >gi|213852789|ref|ZP_03382321.1| hypothetical protein SentesT_07966 [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 82 Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 28/46 (60%) Query: 90 YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 Y LEVSSPG+DRPM + R+ G VA + ++ +++K G I Sbjct: 4 YNLEVSSPGLDRPMFTADHYARFQGEEVALVLRMAVQNRRKWQGII 49 >gi|268319260|ref|YP_003292916.1| hypothetical protein FI9785_775 [Lactobacillus johnsonii FI9785] gi|262397635|emb|CAX66649.1| conserved hypothetical protein [Lactobacillus johnsonii FI9785] Length = 158 Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 3/96 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 ++ V+ P+ E V + ++EK L+I+V+R + + + LS+ +S LD Sbjct: 8 VADVVTPLAEARGDELVDVEYVKEKKQYYLRIYVDRRPVGIDIEEIANLSELVSEKLDKL 67 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + Y LE+SSPG++RP+ + D+ R G + Sbjct: 68 DPDPFPEPYILELSSPGLERPIKNEKDWERAKGSYI 103 >gi|256832249|ref|YP_003160976.1| hypothetical protein Jden_1017 [Jonesia denitrificans DSM 20603] gi|256685780|gb|ACV08673.1| protein of unknown function DUF150 [Jonesia denitrificans DSM 20603] Length = 177 Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 62 GNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 G + L +S+ +S LD +++ Y LEVSSPG RP+ + F R G +++ + Sbjct: 51 GPVGLETISSVSRDLSTALDSVSVLHSQYTLEVSSPGTSRPLTQPRHFRRNVGRLISVKT 110 Query: 122 V 122 V Sbjct: 111 V 111 >gi|118473512|ref|YP_886961.1| hypothetical protein MSMEG_2624 [Mycobacterium smegmatis str. MC2 155] gi|259585793|sp|A0QVM3|RIMP_MYCS2 RecName: Full=Ribosome maturation factor rimP gi|118174799|gb|ABK75695.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length = 181 Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 4/78 (5%) Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 D + L LS+ S +LD + + Y LEV+SPG+DRP+ + F R G + Sbjct: 54 DKGLDLDAVAMLSRLASGLLDTVDTGDTPYVLEVTSPGVDRPLTTEKHFRRARGR----K 109 Query: 121 IVLSSGDKQKLIGKIMGT 138 LS D L ++ GT Sbjct: 110 AELSLADGSSLTARLGGT 127 >gi|313124032|ref|YP_004034291.1| ribosome maturation factor rimp [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280595|gb|ADQ61314.1| Ribosome maturation factor rimP [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 158 Score = 40.4 bits (93), Expect = 0.11, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 3/96 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 I I+PVI V + ++EK+ L+I+V++ + + ELS+ + LD Sbjct: 8 ILEAIEPVIIGHDCELVDLEYVKEKSQYYLRIYVDKQPNGIDIETIAELSELVGEKLDSM 67 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + + Y LE+SSPG++RP+ ++ D+ + G + Sbjct: 68 QPDPLPDPYILELSSPGLERPIKKEQDWEKAKGQYI 103 >gi|312875705|ref|ZP_07735702.1| conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] gi|311088770|gb|EFQ47217.1| conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] Length = 144 Score = 40.4 bits (93), Expect = 0.11, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 47/80 (58%), Gaps = 3/80 (3%) Query: 41 VQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVENI--IEGHYRLEVSSP 97 V I ++E N L+I+V+R+ + + + LS+++S LD+ N + Y LE+SSP Sbjct: 10 VDIEYVKENNQNYLRIYVDREPNGIDIDEIATLSESVSEQLDLINPDPLPDPYILELSSP 69 Query: 98 GIDRPMVRKSDFLRWNGHVV 117 G++RP+ ++D+ + V Sbjct: 70 GVERPIKTEADWCKAKNDYV 89 >gi|309804399|ref|ZP_07698473.1| conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] gi|308163514|gb|EFO65787.1| conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] Length = 144 Score = 40.4 bits (93), Expect = 0.11, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 47/80 (58%), Gaps = 3/80 (3%) Query: 41 VQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVENI--IEGHYRLEVSSP 97 V I ++E N L+I+V+R+ + + + LS+++S LD+ N + Y LE+SSP Sbjct: 10 VDIEYVKENNQNYLRIYVDREPNGIDIDEIATLSESVSEQLDLINPDPLPDPYILELSSP 69 Query: 98 GIDRPMVRKSDFLRWNGHVV 117 G++RP+ ++D+ + V Sbjct: 70 GVERPIKTEADWCKAKNDYV 89 >gi|167751251|ref|ZP_02423378.1| hypothetical protein EUBSIR_02237 [Eubacterium siraeum DSM 15702] gi|167655758|gb|EDR99887.1| hypothetical protein EUBSIR_02237 [Eubacterium siraeum DSM 15702] Length = 163 Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/99 (22%), Positives = 50/99 (50%), Gaps = 1/99 (1%) Query: 29 IQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 + P+IE + + +E + L++ ++ DG + +CEE+++ ++ +D + I+ Sbjct: 23 VLPIIERYGYELWDVIFEKEGAMWYLKVLFDKADGGIDDVECEEITEPLNKAVDTLSCID 82 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 EV SPG+DR + + F++ G + + +G Sbjct: 83 LVDVFEVGSPGLDRQLRKPFHFVKMKGEKIKVTVRDENG 121 >gi|294631731|ref|ZP_06710291.1| conserved hypothetical protein [Streptomyces sp. e14] gi|292835064|gb|EFF93413.1| conserved hypothetical protein [Streptomyces sp. e14] Length = 169 Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust. Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 8/127 (6%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII-EGHYRLEVSSPGIDRPMVRKS 107 + +L++ V+ D G L ++S+A+S LD + + EG Y LEV +PG +R + Sbjct: 34 RKRVLRVVVDSDTG-ADLDQIADVSRALSAKLDESDAMGEGEYTLEVGTPGAERLLTEHR 92 Query: 108 DFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSL 167 ++R G + ++ + +L+ +I+ + G LE G K ++F + Sbjct: 93 HYVRATGRLAKFQL----AEGGELVARILRVDDEGLDLEVP--GVKGRKATTRRVAFPDV 146 Query: 168 LSARLIV 174 + AR+ V Sbjct: 147 VRARVQV 153 >gi|642363|emb|CAA88035.1| 15 kD protein [Thermus thermophilus] Length = 156 Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 59 RDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNG 114 +D+ +T+ D EE S+ I LD E+ I G YRL V SPG R R+ F R+ G Sbjct: 51 KDERPITVADLEEASRHIEAALDREDPIPGSYRLLVESPGPKRLFTRRH-FERFQG 105 >gi|255033850|ref|YP_003084471.1| hypothetical protein Dfer_0034 [Dyadobacter fermentans DSM 18053] gi|254946606|gb|ACT91306.1| protein of unknown function DUF150 [Dyadobacter fermentans DSM 18053] Length = 160 Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Query: 55 IFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNG 114 I V+ D+G +T++ C +S+ ++ L+ + Y LEVSSPG+D+P++ + + G Sbjct: 38 ILVDSDEG-ITIQQCTSISRRLAKQLEELEVFTQAYTLEVSSPGLDQPLLLPRQYKKNVG 96 Query: 115 HVVACEIVLSSGD 127 +I L SG+ Sbjct: 97 R--NLKITLKSGE 107 >gi|315604482|ref|ZP_07879547.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str. F0310] gi|315313809|gb|EFU61861.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str. F0310] Length = 156 Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 4/75 (5%) Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+A+S LD + I+G Y LEVS+PG +R + + +LR G +V + L +G + Sbjct: 60 VSRAVSRALDDADPIDGEYLLEVSTPGAERELTKVDHWLRQVGRLV--RVKLRAG--GHV 115 Query: 132 IGKIMGTSETGFFLE 146 G+++ E+G ++ Sbjct: 116 SGRVVDADESGATID 130 >gi|169630218|ref|YP_001703867.1| hypothetical protein MAB_3136c [Mycobacterium abscessus ATCC 19977] gi|259585791|sp|B1MD92|RIMP_MYCA9 RecName: Full=Ribosome maturation factor rimP gi|169242185|emb|CAM63213.1| Conserved hypothetical protein [Mycobacterium abscessus] Length = 189 Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 6/82 (7%) Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 LS+ S +LD + Y LE+++PG+DRP+ + F R H+ +I L++G + L Sbjct: 70 LSRTASALLDEADTGWQAYELEITTPGVDRPLTTVAHFRR--AHLRLAQIRLTNG--EDL 125 Query: 132 IGKIMGTSETG--FFLEKEKRG 151 +G+I T + G L K +G Sbjct: 126 LGRIGITHDDGVQVVLRKPIKG 147 >gi|239928613|ref|ZP_04685566.1| hypothetical protein SghaA1_10340 [Streptomyces ghanaensis ATCC 14672] gi|291436938|ref|ZP_06576328.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291339833|gb|EFE66789.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 173 Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust. Identities = 34/151 (22%), Positives = 69/151 (45%), Gaps = 7/151 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD-VE 83 + +++P++ F +I++ + V D L ++S+A+S LD + Sbjct: 9 LRELLEPLVSSQGFDLEEIAVDSVGRRRVLRVVVDSDTGADLDRIADVSRALSAKLDETD 68 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + +G Y LEV +PG +R + ++R G +V ++ + +L+ +I+ + G Sbjct: 69 AMGQGEYTLEVGTPGAERLLTEHRHYVRATGRLVRFQLA----EGGELVARILEVGDDGL 124 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 LE G K ++FD + AR+ V Sbjct: 125 DLEVP--GVKGRKATARRLAFDDITRARVQV 153 >gi|325685947|gb|EGD28010.1| hypothetical protein HMPREF5505_0324 [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 176 Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 3/96 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 I I+PVI V + ++EK+ L+I+V++ + + ELS+ + LD Sbjct: 26 ILEAIEPVIIGHDCELVDLEYVKEKSQYYLRIYVDKQPNGIDIETIAELSELVGEKLDSM 85 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + + Y LE+SSPG++RP+ ++ D+ + G + Sbjct: 86 QPDPLPDPYILELSSPGLERPIKKEQDWEKAKGQYI 121 >gi|87125355|ref|ZP_01081201.1| hypothetical protein RS9917_08055 [Synechococcus sp. RS9917] gi|86167124|gb|EAQ68385.1| hypothetical protein RS9917_08055 [Synechococcus sp. RS9917] Length = 155 Score = 40.0 bits (92), Expect = 0.14, Method: Compositional matrix adjust. Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 2/148 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGN-MTLRDCEELSQAISP 78 L D+++V + F + ++ + + LQI + R +G+ ++L DC LS + Sbjct: 5 LLPDLTAVAASTAQAHGFELADVQVMTHLQPMTLQIQIRRSNGDDVSLDDCARLSAPMGD 64 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +D + Y LE+SSPGI + DF + + + G +Q+ G ++ Sbjct: 65 AIDNAALPIEAYVLEISSPGIGDQLQTDRDFRTFRSYPIEVIYRDDEGGEQRQQGSLLER 124 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDS 166 ++ L R ++ + IA+ S Sbjct: 125 TDEHIHLNVRGRIKRISRQAVIAVQLTS 152 >gi|320531906|ref|ZP_08032816.1| conserved domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320135875|gb|EFW27913.1| conserved domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 172 Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 31/56 (55%) Query: 62 GNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 G++ L ++ A+S LD + ++G Y LEVS+PG +R + F R GH V Sbjct: 61 GDLDLDSLGPVTAAVSQALDEADPVKGQYTLEVSTPGAERELTTLRHFRRAVGHSV 116 >gi|256843342|ref|ZP_05548830.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN] gi|256849839|ref|ZP_05555270.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US] gi|262046915|ref|ZP_06019875.1| conserved hypothetical protein [Lactobacillus crispatus MV-3A-US] gi|293381213|ref|ZP_06627221.1| SP14.3 family protein [Lactobacillus crispatus 214-1] gi|295693138|ref|YP_003601748.1| hypothetical protein LCRIS_01276 [Lactobacillus crispatus ST1] gi|312978243|ref|ZP_07789987.1| SP14.3 protein [Lactobacillus crispatus CTV-05] gi|256614762|gb|EEU19963.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN] gi|256713328|gb|EEU28318.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US] gi|260572897|gb|EEX29457.1| conserved hypothetical protein [Lactobacillus crispatus MV-3A-US] gi|290922253|gb|EFD99247.1| SP14.3 family protein [Lactobacillus crispatus 214-1] gi|295031244|emb|CBL50723.1| UPF0090 protein [Lactobacillus crispatus ST1] gi|310894961|gb|EFQ44031.1| SP14.3 protein [Lactobacillus crispatus CTV-05] Length = 158 Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 3/88 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 + V++ +I+E V + ++EK L+I+V+R + + + LS+ +S LD Sbjct: 8 VRPVVETIIDEHGDMLVDMEYVKEKGQNYLRIYVDRQPNGIDIDEIAALSELVSEKLDAL 67 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDF 109 + + Y LE+SSPG +RP+ K+D+ Sbjct: 68 DPDPLPDPYVLELSSPGAERPIKTKADW 95 >gi|15806797|ref|NP_295519.1| hypothetical protein DR_1796 [Deinococcus radiodurans R1] gi|34223164|sp|Q9RTG8|RIMP_DEIRA RecName: Full=Ribosome maturation factor rimP gi|6459574|gb|AAF11352.1|AE002021_1 conserved hypothetical protein [Deinococcus radiodurans R1] Length = 158 Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 2/85 (2%) Query: 32 VIEEMSFRSVQISLLEE-KNLLLQIFVER-DDGNMTLRDCEELSQAISPILDVENIIEGH 89 + + F ++++ E ++L++ + ++R D+ +T+ D S+A D + IE Sbjct: 18 AVRPLGFEVLEVTQQREGRDLIVLVRIDRLDEQPVTMDDLTAASRAAEAEFDRVDPIEEE 77 Query: 90 YRLEVSSPGIDRPMVRKSDFLRWNG 114 YRLE SPG RP++R F R G Sbjct: 78 YRLEFESPGGKRPLLRARHFERMIG 102 >gi|104774215|ref|YP_619195.1| hypothetical protein Ldb1336 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514303|ref|YP_813209.1| hypothetical protein LBUL_1245 [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122274965|sp|Q049V1|RIMP_LACDB RecName: Full=Ribosome maturation factor rimP gi|122397110|sp|Q1G9P5|RIMP_LACDA RecName: Full=Ribosome maturation factor rimP gi|103423296|emb|CAI98137.1| Conserved hypothetical protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093618|gb|ABJ58771.1| hypothetical protein LBUL_1245 [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 158 Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 3/96 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 I I+PVI V + ++EK+ L+I+V++ + + ELS+ + LD Sbjct: 8 ILEAIEPVIIGHDCELVDLEYVKEKSQDYLRIYVDKQPNGIDIETIAELSELVGEKLDSM 67 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + + Y LE+SSPG++RP+ ++ D+ + G + Sbjct: 68 QPDPLPDPYILELSSPGLERPIKKEQDWEKAKGQYI 103 >gi|257063652|ref|YP_003143324.1| hypothetical protein Shel_09340 [Slackia heliotrinireducens DSM 20476] gi|256791305|gb|ACV21975.1| uncharacterized conserved protein [Slackia heliotrinireducens DSM 20476] Length = 158 Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 1/69 (1%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSD 108 K ++++++ +G +T D ++ I++ + G Y LEVSSPGIDRP+ Sbjct: 34 KAPTIRVYLDTPEG-VTFDDIAAAQVWVNEIVEEIDPFPGAYTLEVSSPGIDRPLRTPEH 92 Query: 109 FLRWNGHVV 117 F R+ G V Sbjct: 93 FARFAGEDV 101 >gi|330718232|ref|ZP_08312832.1| hypothetical protein LfalK3_02050 [Leuconostoc fallax KCTC 3537] Length = 158 Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGN-MTLRDCEELSQAISPILDV 82 ++ +++PVI+E ++ E +L+I +++ D +T+ D +L++ I+ +LD Sbjct: 9 VAQLVKPVIDEHGDILWDLTFGNEGGQRVLRILIDKADHEFITMNDLTKLTEEINELLDN 68 Query: 83 E--NIIEGHYRLEVSSPGIDRPM 103 + I G Y L++SSPG DRP+ Sbjct: 69 SEPDPIPGTYMLDISSPGADRPL 91 >gi|42526618|ref|NP_971716.1| hypothetical protein TDE1108 [Treponema denticola ATCC 35405] gi|51316704|sp|Q73NP4|RIMP_TREDE RecName: Full=Ribosome maturation factor rimP gi|41816811|gb|AAS11597.1| conserved hypothetical protein [Treponema denticola ATCC 35405] gi|325473160|gb|EGC76356.1| hypothetical protein HMPREF9353_02549 [Treponema denticola F0402] Length = 148 Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 50/89 (56%), Gaps = 3/89 (3%) Query: 27 SVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 S +P++E + F+ V +++L +K++ V + + + ++DC + + + P +E +I Sbjct: 13 SECEPLVEGLGFKLVDLNVLHKKDVWQVKAVIKSEKGVGIKDCTSVHRTLQP--RIEALI 70 Query: 87 EGH-YRLEVSSPGIDRPMVRKSDFLRWNG 114 +EVSSPGI+R + R +F + G Sbjct: 71 GSQDVTMEVSSPGINRLVKRAVEFYAFVG 99 >gi|262202084|ref|YP_003273292.1| hypothetical protein Gbro_2150 [Gordonia bronchialis DSM 43247] gi|262085431|gb|ACY21399.1| protein of unknown function DUF150 [Gordonia bronchialis DSM 43247] Length = 179 Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 2/69 (2%) Query: 53 LQIFVERDDGNMTLRDCEELSQAISPILD-VENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 + V+RD G L ELS I +LD V + + Y LEV+SPGIDRP+ + R Sbjct: 37 FSVVVDRD-GGSDLDVLAELSTEIGEVLDAVPALADAAYTLEVTSPGIDRPLTAPRHWRR 95 Query: 112 WNGHVVACE 120 G V E Sbjct: 96 ALGRRVRIE 104 >gi|213962899|ref|ZP_03391159.1| conserved hypothetical protein [Capnocytophaga sputigena Capno] gi|213954556|gb|EEB65878.1| conserved hypothetical protein [Capnocytophaga sputigena Capno] Length = 155 Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 8/117 (6%) Query: 53 LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRW 112 ++I ++ D G + + DC ELS+A+ LD E + + LEV+S G P V + + + Sbjct: 34 IRITIDGDKG-VCIDDCIELSRAVEGALDRETV---DFALEVTSFGATEPFVMERQYTKN 89 Query: 113 NGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLS 169 G V +++ D + G + G E LE E R K + + +I + + L + Sbjct: 90 AGRTVQ----ITTLDGKTHEGVLKGLQEGKAVLETETREPKPVGKGKITVKKEQLFA 142 >gi|194476585|ref|YP_002048764.1| hypothetical protein PCC_0102 [Paulinella chromatophora] gi|171191592|gb|ACB42554.1| hypothetical protein PCC_0102 [Paulinella chromatophora] Length = 159 Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 28/123 (22%) Query: 42 QISLLEEKN--------------LLLQIFV--ERDDGNMTLRDCEELSQAISPILDVENI 85 Q++ L EKN L +QI V ERD +++ DC S+ + LD ++ Sbjct: 17 QVAYLSEKNICDMQLLANLVPITLKIQISVSSERD---VSINDCTVFSRQVEEALDNSSL 73 Query: 86 IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFL 145 ++ Y LEVSSPGI+ ++ DF + G V E+V++ K G L Sbjct: 74 LKEAYILEVSSPGINEELINDRDFRIFRGFPV--EVVVNK-------SKTPTNRREGLLL 124 Query: 146 EKE 148 E++ Sbjct: 125 ERD 127 >gi|88807315|ref|ZP_01122827.1| hypothetical protein WH7805_12228 [Synechococcus sp. WH 7805] gi|88788529|gb|EAR19684.1| hypothetical protein WH7805_12228 [Synechococcus sp. WH 7805] Length = 155 Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 2/99 (2%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDG-NMTLRDCEELSQAISP 78 L DI+SV F I +L + + +Q+ + R DG +++L DC S+ + Sbjct: 5 LLPDITSVAAATAAAQGFELAGIQILTHLQPMTVQVQIRRSDGSDVSLDDCAGFSRPMGE 64 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 L+ + ++ Y LE+SSPGI + DF + + V Sbjct: 65 ALESQALLTEAYVLEISSPGIGDQLQSDRDFQTFRSYPV 103 >gi|283850805|ref|ZP_06368091.1| protein of unknown function DUF150 [Desulfovibrio sp. FW1012B] gi|283573728|gb|EFC21702.1| protein of unknown function DUF150 [Desulfovibrio sp. FW1012B] Length = 181 Score = 39.7 bits (91), Expect = 0.19, Method: Compositional matrix adjust. Identities = 17/71 (23%), Positives = 38/71 (53%) Query: 63 NMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV 122 +T+ +C S+ ++ +L++E++ Y LEVSSPG+ R + + G V+ ++ Sbjct: 58 GVTIDECARASRHLATLLEMEDLFHDPYVLEVSSPGLGRRFFEPAQLPAYVGQVIEAKLT 117 Query: 123 LSSGDKQKLIG 133 + +++ G Sbjct: 118 VPRDGRKRFKG 128 >gi|323466336|gb|ADX70023.1| Ribosome maturation factor rimP [Lactobacillus helveticus H10] Length = 172 Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust. Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 11/149 (7%) Query: 27 SVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDV--E 83 V++ +I+E V + ++EK L+I+V+R + + + LS+ +S LD Sbjct: 24 PVVETIIDEHGDMLVDMEYVKEKGQNYLRIYVDRQPNGIDIDEIAALSELVSEKLDTIDP 83 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + + Y LE+SSPG +RP+ ++D+ R V + DK+ G + + Sbjct: 84 DPLPDPYVLELSSPGAERPIKTEADWKRALNDYVHIGLYQKIDDKKVYEGTLKYYNNDEI 143 Query: 144 FLE-KEKRGEKDMN-------ELQIAISF 164 LE K+K K + +++ AI F Sbjct: 144 VLEVKDKTRRKKLTIPRKLIAKIRFAIEF 172 >gi|258652413|ref|YP_003201569.1| hypothetical protein Namu_2203 [Nakamurella multipartita DSM 44233] gi|258555638|gb|ACV78580.1| protein of unknown function DUF150 [Nakamurella multipartita DSM 44233] Length = 173 Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 9/99 (9%) Query: 66 LRDCEELSQAISPILDVEN--IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVL 123 L D E+S+ IS LD + + E Y LEV+SPG+ RP+ F R G +++ Sbjct: 50 LDDAAEVSREISERLDGPDDPMGEHPYTLEVTSPGVGRPLREPRHFRRARGR-----LLV 104 Query: 124 SSGDKQKLIGKIMGTSETG--FFLEKEKRGEKDMNELQI 160 + ++ + G ++ S+TG L +K+G + EL + Sbjct: 105 VTTEQGPVTGHLLRASDTGIELALAPDKKGVVTVVELPL 143 >gi|295426317|ref|ZP_06818976.1| protein of hypothetical function DUF150 [Lactobacillus amylolyticus DSM 11664] gi|295063990|gb|EFG54939.1| protein of hypothetical function DUF150 [Lactobacillus amylolyticus DSM 11664] Length = 159 Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 10/114 (8%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDD-GNMTLRDCEELSQAISPILDV 82 I S I+P+I++ V I ++EK L+I+V++D G + + + LS+ +S LD Sbjct: 8 IRSEIEPIIDQRGDEFVDIEYVKEKGQNYLRIYVDKDQLGGIDINEIAYLSELVSEKLDS 67 Query: 83 --ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 + + Y L +SSPG + P+ D+ + G V G QK+ GK Sbjct: 68 LDPDPLPDPYVLGLSSPGAEHPIKSAKDWTKARGEYVHV------GLYQKIDGK 115 >gi|259586224|sp|A9BCI2|RIMP_PROM4 RecName: Full=Ribosome maturation factor rimP Length = 155 Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust. Identities = 22/84 (26%), Positives = 46/84 (54%), Gaps = 3/84 (3%) Query: 49 KNLLLQIFVERD-DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKS 107 K + +Q+ +++ +++L DC + S+ IS +++ +I Y LE+SSPG+ + Sbjct: 34 KPITIQVQIQKKPKKDVSLDDCAQFSELISETIELSKLINEPYLLEISSPGLGDLLQTDK 93 Query: 108 DFLRWNGHVVACEIVLSSGDKQKL 131 DF + G + E++ + + KL Sbjct: 94 DFKTFKGFPI--EVLFKNNENTKL 115 >gi|161507685|ref|YP_001577639.1| hypothetical protein lhv_1346 [Lactobacillus helveticus DPC 4571] gi|172048309|sp|A8YVR1|RIMP_LACH4 RecName: Full=Ribosome maturation factor rimP gi|160348674|gb|ABX27348.1| hypothetical protein lhv_1346 [Lactobacillus helveticus DPC 4571] Length = 158 Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust. Identities = 38/151 (25%), Positives = 71/151 (47%), Gaps = 11/151 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 + V++ +I+E V + ++EK L+I+V+R + + + LS+ +S LD Sbjct: 8 VRPVVETIIDEHGDMLVDMEYVKEKGQNYLRIYVDRQPNGIDIDEIAALSELVSEKLDTI 67 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + + Y LE+SSPG +RP+ ++D+ R V + DK+ G + + Sbjct: 68 DPDPLPDPYVLELSSPGAERPIKTEADWKRALNDYVHIGLYQKIDDKKVYEGTLKYYNND 127 Query: 142 GFFLE-KEKRGEKDMN-------ELQIAISF 164 LE K+K K + +++ AI F Sbjct: 128 EIVLEVKDKTRRKKLTIPRKLIAKIRFAIEF 158 >gi|291460013|ref|ZP_06599403.1| hypothetical protein GCWU000341_02180 [Oribacterium sp. oral taxon 078 str. F0262] gi|291417354|gb|EFE91073.1| hypothetical protein GCWU000341_02180 [Oribacterium sp. oral taxon 078 str. F0262] Length = 98 Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust. Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 2/52 (3%) Query: 53 LQIFVERDDGN-MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGI-DRP 102 L++F+ R DG MT DC +S+ +S LD E+ IE Y LEV S G D P Sbjct: 36 LRVFILRKDGEPMTTDDCAAVSRPLSRWLDKEDFIEDEYVLEVCSLGFKDEP 87 >gi|159904154|ref|YP_001551498.1| hypothetical protein P9211_16131 [Prochlorococcus marinus str. MIT 9211] gi|159889330|gb|ABX09544.1| DUF150 [Prochlorococcus marinus str. MIT 9211] Length = 171 Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust. Identities = 25/102 (24%), Positives = 53/102 (51%), Gaps = 10/102 (9%) Query: 49 KNLLLQIFVERD-DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKS 107 K + +Q+ +++ +++L DC + S+ IS +++ +I Y LE+SSPG+ + Sbjct: 50 KPITIQVQIQKKPKKDVSLDDCAQFSELISETIELSKLINEPYLLEISSPGLGDLLQTDK 109 Query: 108 DFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEK 149 DF + G + E++ + + KL +++G E+ K Sbjct: 110 DFKTFKGFPI--EVLFKNNENTKL-------TKSGLLHERSK 142 >gi|21224052|ref|NP_629831.1| hypothetical protein SCO5703 [Streptomyces coelicolor A3(2)] gi|256784870|ref|ZP_05523301.1| hypothetical protein SlivT_10300 [Streptomyces lividans TK24] gi|289768764|ref|ZP_06528142.1| UPF0090 protein [Streptomyces lividans TK24] gi|34223163|sp|Q9KYR2|RIMP_STRCO RecName: Full=Ribosome maturation factor rimP gi|7801275|emb|CAB91139.1| hypothetical protein SC5H4.27 [Streptomyces coelicolor A3(2)] gi|289698963|gb|EFD66392.1| UPF0090 protein [Streptomyces lividans TK24] Length = 177 Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 6/99 (6%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII-EGHYRLEVSSPGIDRPMVRKS 107 + +L + V+ D G L ++S+A+S LD + + EG Y LEV +PG +R + + Sbjct: 34 RRRVLSVVVDSDTG-ADLDRIADVSRALSAKLDETDAMGEGEYTLEVGTPGAERSLTQHR 92 Query: 108 DFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE 146 ++R +V + L G +L+ +I+ E G LE Sbjct: 93 HYVRATDRLVRFQ--LREG--GELVARILAVDEDGLDLE 127 >gi|220903348|ref|YP_002478660.1| hypothetical protein Ddes_0062 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|254799886|sp|B8J1Y7|RIMP_DESDA RecName: Full=Ribosome maturation factor rimP gi|219867647|gb|ACL47982.1| protein of unknown function DUF150 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 258 Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust. Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 13/121 (10%) Query: 63 NMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDR---------PMVRKSDFLRWN 113 + T+ CEE+S+ ++ L+VE+ I Y LEVS+PG+ R P V R + Sbjct: 87 SATIEQCEEISRHLALALEVEDSIADAYVLEVSTPGLSRLFFSLEQMIPYVGDVVEARLH 146 Query: 114 GHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK---EKRGE-KDMNELQIAISFDSLLS 169 V + + G ++ G ++ + F L GE +D N+ + + ++++ Sbjct: 147 TPVASTDPAAHGGPRRVWRGTLVAVEDDAFVLAPVTVSPEGEVEDENQPPVRLPWEAVRR 206 Query: 170 A 170 A Sbjct: 207 A 207 >gi|317125352|ref|YP_004099464.1| hypothetical protein Intca_2228 [Intrasporangium calvum DSM 43043] gi|315589440|gb|ADU48737.1| protein of unknown function DUF150 [Intrasporangium calvum DSM 43043] Length = 197 Score = 38.9 bits (89), Expect = 0.33, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 64 MTLRDCEELSQAISPILDVENIIEG-HYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 ++L D + ++A+S LD +++ Y LEVSSPG+ RP+ + DF R G +V Sbjct: 59 LSLDDIADATRAVSTRLDDSDVMGSMPYVLEVSSPGVGRPLRSRHDFRRQVGRLV 113 >gi|218509056|ref|ZP_03506934.1| hypothetical protein RetlB5_16765 [Rhizobium etli Brasil 5] Length = 83 Score = 38.9 bits (89), Expect = 0.34, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 6/67 (8%) Query: 119 CEIVLSSGDKQKLIGKIMGTSETGFFLEKEK--RGEKDMNELQIAISFDSLLSARLIVTD 176 CE + ++++ GKI+ GF LE+++ GE E +++I F +L A+LI+TD Sbjct: 1 CETSIMICNRKRFRGKIVEADADGFTLERDQIAYGE----EPKVSIPFTALSDAKLILTD 56 Query: 177 ELLRASL 183 +L+R +L Sbjct: 57 DLIRDAL 63 >gi|227892602|ref|ZP_04010407.1| protein of hypothetical function DUF150 [Lactobacillus ultunensis DSM 16047] gi|227865587|gb|EEJ73008.1| protein of hypothetical function DUF150 [Lactobacillus ultunensis DSM 16047] Length = 172 Score = 38.9 bits (89), Expect = 0.34, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 4/136 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + V++ +I+E V + + EK L+I+V+R+ + + + LS+ +S LD Sbjct: 22 VRPVVESIIDEHGDMLVDMEYVTEKGKKYLRIYVDREPDGIDIDEIAALSELVSEKLDSL 81 Query: 84 NI--IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 N Y LE+SSPG +RP+ +D+ R + + DK+ G + ++ Sbjct: 82 NPDPFPEPYVLELSSPGAERPIKTAADWKRALNDYIHIGLYQKVEDKKVYEGTLKSYNDD 141 Query: 142 GFFLE-KEKRGEKDMN 156 LE K+K K + Sbjct: 142 EIVLEIKDKTRRKTLT 157 >gi|193213434|ref|YP_001999387.1| hypothetical protein Cpar_1795 [Chlorobaculum parvum NCIB 8327] gi|259585748|sp|B3QQI4|RIMP_CHLP8 RecName: Full=Ribosome maturation factor rimP gi|193086911|gb|ACF12187.1| protein of unknown function DUF150 [Chlorobaculum parvum NCIB 8327] Length = 170 Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 5/95 (5%) Query: 52 LLQIFVERDDGNMTLRDCEELSQAISPILDV--ENII--EGHYRLEVSSPGIDRPMVRKS 107 ++++ +E D G +++ C +LS+ I L+ EN++ G + L VSSPGI P+ Sbjct: 37 IIELTIEADKG-VSIDQCAKLSRTIRARLEACEENLMLAAGDFELMVSSPGIGEPIRVSR 95 Query: 108 DFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 +LR G + + S G+++++ GK+ S G Sbjct: 96 QYLRHLGRKMKVVYLDSEGERKEIEGKLTEASLEG 130 >gi|317490694|ref|ZP_07949160.1| hypothetical protein HMPREF1023_02860 [Eggerthella sp. 1_3_56FAA] gi|316910225|gb|EFV31868.1| hypothetical protein HMPREF1023_02860 [Eggerthella sp. 1_3_56FAA] Length = 159 Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust. Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 3/48 (6%) Query: 70 EELSQA---ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNG 114 +ELS A I+ ++D + G Y LEVSSPGIDRP+ F R+ G Sbjct: 51 DELSSAQAWINDLMDELDPFPGAYTLEVSSPGIDRPLRTAEHFARFVG 98 >gi|237785728|ref|YP_002906433.1| hypothetical protein ckrop_1145 [Corynebacterium kroppenstedtii DSM 44385] gi|259585744|sp|C4LJ85|RIMP_CORK4 RecName: Full=Ribosome maturation factor rimP gi|237758640|gb|ACR17890.1| hypothetical protein ckrop_1145 [Corynebacterium kroppenstedtii DSM 44385] Length = 189 Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 9/66 (13%) Query: 70 EELSQAISPILDVE------NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVL 123 EELS IS D N G YRLEVS+PG D P++ F R GH+ VL Sbjct: 54 EELSDEISRNFDAAESDGELNFGAG-YRLEVSTPGFDEPLLAARHFRRQRGHI--ATFVL 110 Query: 124 SSGDKQ 129 + D + Sbjct: 111 NQADDE 116 >gi|158313031|ref|YP_001505539.1| hypothetical protein Franean1_1179 [Frankia sp. EAN1pec] gi|259585776|sp|A8L6F1|RIMP_FRASN RecName: Full=Ribosome maturation factor rimP gi|158108436|gb|ABW10633.1| protein of unknown function DUF150 [Frankia sp. EAN1pec] Length = 308 Score = 38.5 bits (88), Expect = 0.42, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%) Query: 86 IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFL 145 I G Y LEV+SPG+DRP+V + R G +V V+ D ++ G+++ + G L Sbjct: 119 ISGAYVLEVTSPGVDRPLVEPRHWRRAVGRLV----VVRRADGVEVEGRVLSADDEGADL 174 >gi|255326387|ref|ZP_05367471.1| conserved hypothetical protein [Rothia mucilaginosa ATCC 25296] gi|255296604|gb|EET75937.1| conserved hypothetical protein [Rothia mucilaginosa ATCC 25296] Length = 223 Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 14/142 (9%) Query: 24 DISSVIQPVIEEMSF--RSVQISLLEEKNLLLQIFV----ERDDGNMTLRDCEELSQAIS 77 +++ I PVI E S ++IS N ++I V ER D +++L E+S AIS Sbjct: 58 EVAEAIAPVISEFSLVLEGLKISG-PAANRTVKITVDYTAERTD-SLSLDSLAEISGAIS 115 Query: 78 PILDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD EN Y LEVSSPG R + + + R ++A +++ D + + ++ Sbjct: 116 SALDRADENDEFFPYELEVSSPGATRALTERRHWERARTRLIA----VTAPDGTEYLARL 171 Query: 136 MGTSETGFFLEKEKRGEKDMNE 157 + G L ++K +K E Sbjct: 172 HEVQDEGPVLARKKNTKKGQKE 193 >gi|54026040|ref|YP_120282.1| hypothetical protein nfa40690 [Nocardia farcinica IFM 10152] gi|81373776|sp|Q5YSC3|RIMP_NOCFA RecName: Full=Ribosome maturation factor rimP gi|54017548|dbj|BAD58918.1| hypothetical protein [Nocardia farcinica IFM 10152] Length = 217 Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 3/78 (3%) Query: 61 DGNMTLRDCEELSQAISPILDVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVAC 119 DG L ELS +S +LD +I + Y LEV++PG+DRP+ + R G V Sbjct: 49 DGAADLDAVAELSSEMSVVLDDTDIFGDSPYLLEVTTPGVDRPLTAPRHWRRAQGRKV-- 106 Query: 120 EIVLSSGDKQKLIGKIMG 137 I L G + G G Sbjct: 107 RITLRPGAEPPDPGGSAG 124 >gi|260436689|ref|ZP_05790659.1| conserved hypothetical protein [Synechococcus sp. WH 8109] gi|260414563|gb|EEX07859.1| conserved hypothetical protein [Synechococcus sp. WH 8109] Length = 155 Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust. Identities = 35/144 (24%), Positives = 61/144 (42%), Gaps = 17/144 (11%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDG-NMTLRDCEELSQAISP 78 L D+ +++ V F I LL + + L++ + G +++L DC S + Sbjct: 5 LLPDLETLVTDVASSKGFALCGIQLLTHMSPMTLEVQIRHSSGADVSLDDCAGFSGVLGD 64 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 L+ ++ Y LE+SSPGI + DF + G V + +Q+L G ++ Sbjct: 65 ALEASTLLTDAYVLEISSPGIGDQLSSDRDFETFRGFPVEVHHRDNDDSEQRLEGLLL-- 122 Query: 139 SETGFFLEKEKRGEKDMNELQIAI 162 E+D + LQI I Sbjct: 123 -------------ERDADTLQINI 133 >gi|145224622|ref|YP_001135300.1| hypothetical protein Mflv_4042 [Mycobacterium gilvum PYR-GCK] gi|315444954|ref|YP_004077833.1| hypothetical protein Mspyr1_33870 [Mycobacterium sp. Spyr1] gi|259585792|sp|A4TCF3|RIMP_MYCGI RecName: Full=Ribosome maturation factor rimP gi|145217108|gb|ABP46512.1| protein of unknown function DUF150 [Mycobacterium gilvum PYR-GCK] gi|315263257|gb|ADT99998.1| uncharacterized conserved protein [Mycobacterium sp. Spyr1] Length = 178 Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 6/75 (8%) Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 D + L ELS+ S LD + Y LEV+SPG+DRP+ + + R G + E Sbjct: 54 DRGLDLDAVAELSRLASEQLD--TLDTPPYVLEVTSPGVDRPLTEEKHYRRAQGRL--AE 109 Query: 121 IVLSSGDKQKLIGKI 135 + L+ G L G+I Sbjct: 110 VTLADG--STLTGRI 122 >gi|283458509|ref|YP_003363137.1| hypothetical protein RMDY18_14850 [Rothia mucilaginosa DY-18] gi|283134552|dbj|BAI65317.1| uncharacterized protein conserved in archaea [Rothia mucilaginosa DY-18] Length = 223 Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 14/142 (9%) Query: 24 DISSVIQPVIEEMSF--RSVQISLLEEKNLLLQIFV----ERDDGNMTLRDCEELSQAIS 77 +++ I PVI E S ++IS N ++I V ER D +++L E+S AIS Sbjct: 58 EVAEAIAPVISEFSLVLEGLKISG-PAANRTVKITVDYTAERTD-SLSLDSLAEISGAIS 115 Query: 78 PILDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD EN Y LEVSSPG R + + + R ++A +++ D + + ++ Sbjct: 116 SALDRADENDEFFPYELEVSSPGATRALTERRHWERARTRLIA----VTAPDGTEYLARL 171 Query: 136 MGTSETGFFLEKEKRGEKDMNE 157 + G L ++K +K E Sbjct: 172 HEVQDDGPVLARKKNTKKGQKE 193 >gi|259016313|sp|Q7U8L5|RIMP_SYNPX RecName: Full=Ribosome maturation factor rimP Length = 155 Score = 38.1 bits (87), Expect = 0.56, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 70/163 (42%), Gaps = 28/163 (17%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDG-NMTLRDCEELSQAISP 78 L ++ ++ V + F I LL + L++ + R +G ++ + DC S + Sbjct: 5 LLPELETLATSVAADQGFELCGIQLLTHLAPMTLEVHIRRSNGVDVNMDDCAGFSGTLGE 64 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD--KQKLIGKIM 136 L+ ++ Y LE+SSPGI + DF + G V E+V D +Q+L G ++ Sbjct: 65 ALESAQLLTEAYVLEISSPGIGETLSSDRDFQTFRGFPV--EVVHRDRDDTEQRLEGLLL 122 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAI-------SFDSLLSARL 172 E+D + LQI I D +LS RL Sbjct: 123 ---------------ERDEDTLQINIRGRIKRLPRDHVLSVRL 150 >gi|116618454|ref|YP_818825.1| hypothetical protein LEUM_1359 [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227431860|ref|ZP_03913884.1| protein of hypothetical function DUF150 [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|122271346|sp|Q03WH0|RIMP_LEUMM RecName: Full=Ribosome maturation factor rimP gi|116097301|gb|ABJ62452.1| hypothetical protein LEUM_1359 [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227352402|gb|EEJ42604.1| protein of hypothetical function DUF150 [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 158 Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 10/129 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGN-MTLRDCEELSQAISPILDV 82 + +I P+IE + ++ +E +L+I +++ D +T+ D +Q ++ +LD Sbjct: 9 VIDLISPIIEAHNDLLWDLTFTKEGGQKVLRILLDKPDHQFITMNDLTLFTQEVNELLDT 68 Query: 83 --ENIIEGHYRLEVSSPGIDRPMVRKSDFLRW----NGHVVACEIVLSSGDKQKLIGKIM 136 + I Y L++SSPG DRP+ F W N +++ V G K K GKI Sbjct: 69 VDPDPIPEAYVLDISSPGADRPLKELWHF-EWAKEANENILVSLFVAKEGQK-KWQGKIA 126 Query: 137 GTSETGFFL 145 ++ G L Sbjct: 127 DLNKDGLTL 135 >gi|256820093|ref|YP_003141372.1| hypothetical protein Coch_1263 [Capnocytophaga ochracea DSM 7271] gi|256581676|gb|ACU92811.1| protein of unknown function DUF150 [Capnocytophaga ochracea DSM 7271] Length = 155 Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 8/117 (6%) Query: 53 LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRW 112 +++ ++ D G + + DC ELS+AI LD E + + LEV+S G P V + + + Sbjct: 34 IRVTIDGDKG-VGIDDCIELSRAIENSLDREAM---DFALEVTSFGATEPFVMERQYAKN 89 Query: 113 NGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLS 169 G V +++ D + G + G +E +E E R K + + +I + + L + Sbjct: 90 AGRTVQ----ITTLDGKTHEGLLKGIAEGNVIIETETREPKPVGKGKITVKKEHLFA 142 >gi|184201253|ref|YP_001855460.1| hypothetical protein KRH_16070 [Kocuria rhizophila DC2201] gi|259585800|sp|B2GKR8|RIMP_KOCRD RecName: Full=Ribosome maturation factor rimP gi|183581483|dbj|BAG29954.1| hypothetical protein [Kocuria rhizophila DC2201] Length = 163 Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust. Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 8/135 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGN--MTLRDCEELSQAISPILD 81 I + ++PV+ + L + LQ+ V+ DG + L ++Q IS LD Sbjct: 9 IRATVEPVVAAAGLHLEECELKGQGATRTLQVLVDLPDGTEALGLDRVAAVAQEISDALD 68 Query: 82 VENIIEGH-YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 ++ + G Y LEVSSPG R + + R GH+V + + ++ +++ E Sbjct: 69 RDDPVPGPPYELEVSSPGATRTLETPRHWRRTVGHLVRIRTL----EGERYTARLLEAHE 124 Query: 141 TGFFLEKEKRGEKDM 155 +++ + +K M Sbjct: 125 DHAVVQRSHQPKKGM 139 >gi|33241095|ref|NP_876037.1| hypothetical protein Pro1646 [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|51316781|sp|Q7VA23|RIMP_PROMA RecName: Full=Ribosome maturation factor rimP gi|33238624|gb|AAQ00690.1| Uncharacterized YhbC family conserved protein [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 155 Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust. Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Query: 45 LLEEKNLLLQIFVERDDG-NMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPM 103 L + K + +Q+ + +G +++L DC LS+ I +++ +I Y LE+SSPG+ + Sbjct: 30 LAQMKPMKIQLQIRHKNGSDVSLEDCSRLSRPIGEVIENSKLINQSYILEISSPGLSDIL 89 Query: 104 VRKSDFLRWNG 114 +F + G Sbjct: 90 ETDKEFATFKG 100 >gi|33865135|ref|NP_896694.1| hypothetical protein SYNW0601 [Synechococcus sp. WH 8102] gi|33638819|emb|CAE07116.1| conserved hypothetical protein [Synechococcus sp. WH 8102] Length = 166 Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 65/152 (42%), Gaps = 28/152 (18%) Query: 32 VIEEMSFRSVQISLLEE-KNLLLQIFVERDDG-NMTLRDCEELSQAISPILDVENIIEGH 89 V + F I LL + L++ + R +G ++ + DC S + L+ ++ Sbjct: 27 VAADQGFELCGIQLLTHLAPMTLEVHIRRSNGVDVNMDDCAGFSGTLGEALESAQLLTEA 86 Query: 90 YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD--KQKLIGKIMGTSETGFFLEK 147 Y LE+SSPGI + DF + G V E+V D +Q+L G ++ Sbjct: 87 YVLEISSPGIGETLSSDRDFQTFRGFPV--EVVHRDRDDTEQRLEGLLL----------- 133 Query: 148 EKRGEKDMNELQIAI-------SFDSLLSARL 172 E+D + LQI I D +LS RL Sbjct: 134 ----ERDEDTLQINIRGRIKRLPRDHVLSVRL 161 >gi|87301302|ref|ZP_01084143.1| hypothetical protein WH5701_15491 [Synechococcus sp. WH 5701] gi|87284270|gb|EAQ76223.1| hypothetical protein WH5701_15491 [Synechococcus sp. WH 5701] Length = 156 Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 10/100 (10%) Query: 51 LLLQIFVERDDG-NMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDF 109 L L I + DG ++ L +C S + +++ ++ Y LEVSSPGI ++ DF Sbjct: 36 LTLVIQIRHADGRDINLDECAAFSGVLGEVVEASELMTQAYVLEVSSPGIGEELLDDRDF 95 Query: 110 LRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEK 149 + G VA GK + T+ G LE+++ Sbjct: 96 HSFRGFPVAVRF---------RDGKGLETTREGLLLERDE 126 >gi|126697020|ref|YP_001091906.1| hypothetical protein P9301_16821 [Prochlorococcus marinus str. MIT 9301] gi|166980189|sp|A3PEY0|RIMP_PROM0 RecName: Full=Ribosome maturation factor rimP gi|126544063|gb|ABO18305.1| DUF150 [Prochlorococcus marinus str. MIT 9301] Length = 155 Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust. Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 1/72 (1%) Query: 51 LLLQIFVERDDGN-MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDF 109 ++++I +++ +GN ++L DC + S ++ N++ Y LE+SS G+ + + DF Sbjct: 36 IVIEIIIKKTNGNDVSLDDCALFNTPASDEIEKSNLLNCSYVLEISSQGVSDELTSERDF 95 Query: 110 LRWNGHVVACEI 121 + G V E+ Sbjct: 96 KTFKGFPVNVEL 107 >gi|113954072|ref|YP_731567.1| hypothetical protein sync_2370 [Synechococcus sp. CC9311] gi|123327605|sp|Q0I7K5|RIMP_SYNS3 RecName: Full=Ribosome maturation factor rimP gi|113881423|gb|ABI46381.1| DUF150 [Synechococcus sp. CC9311] Length = 157 Score = 37.7 bits (86), Expect = 0.75, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 9/129 (6%) Query: 45 LLEEKNLLLQIFVERDDGN-MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPM 103 L + + +QI + R G+ +TL DC S + L+ ++ Y LE+SSPGI + Sbjct: 32 LAHMQPMTVQIQIRRSSGDDVTLDDCAAFSAPMGEALENSAVLNEAYVLEISSPGIGDHL 91 Query: 104 VRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAIS 163 DF + + V G +QK G ++ +E + R ++ I Sbjct: 92 QSDRDFQTFRRYPVDVIHRDPDGAEQKHSGTLLERTENHLKISIHGRIKQ--------IP 143 Query: 164 FDSLLSARL 172 DS+LS L Sbjct: 144 RDSILSVEL 152 >gi|229824125|ref|ZP_04450194.1| hypothetical protein GCWU000282_01429 [Catonella morbi ATCC 51271] gi|229786479|gb|EEP22593.1| hypothetical protein GCWU000282_01429 [Catonella morbi ATCC 51271] Length = 157 Score = 37.7 bits (86), Expect = 0.83, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 4/82 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 ++ I ++E V + ++E K+ L+I+ ++ G + + DC +S+ IS LD Sbjct: 8 VTPAITEIVEANGCYLVDMEYVKEGKSWFLRIYADKP-GRIDIDDCAAISEQISEHLDSI 66 Query: 83 -ENIIEGHYRLEVSSPGIDRPM 103 + Y LEVSSPG +RP+ Sbjct: 67 KPDPFPEAYFLEVSSPGAERPL 88 >gi|212704655|ref|ZP_03312783.1| hypothetical protein DESPIG_02718 [Desulfovibrio piger ATCC 29098] gi|212671889|gb|EEB32372.1| hypothetical protein DESPIG_02718 [Desulfovibrio piger ATCC 29098] Length = 244 Score = 37.7 bits (86), Expect = 0.91, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 27/39 (69%) Query: 63 NMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDR 101 + ++ CEE+S+ + L+VE++IE Y LEVS+PG R Sbjct: 76 SASIDQCEEISRQLGLALEVEDLIEQAYVLEVSTPGFSR 114 >gi|289705160|ref|ZP_06501563.1| conserved hypothetical protein [Micrococcus luteus SK58] gi|289558104|gb|EFD51392.1| conserved hypothetical protein [Micrococcus luteus SK58] Length = 195 Score = 37.4 bits (85), Expect = 0.93, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 7/76 (9%) Query: 53 LQIFVERDDGN--MTLRDCEELSQAISPILD-----VENIIEGHYRLEVSSPGIDRPMVR 105 +++ ++R G ++L D LS +S LD V + G Y LEV++ G+DRP+ Sbjct: 42 VEVVLDRASGTQGLSLDDVARLSGRVSAALDALGDHVPGVGAGEYLLEVTTAGVDRPLTE 101 Query: 106 KSDFLRWNGHVVACEI 121 F R G +V + Sbjct: 102 PRHFARNVGRLVEVSV 117 >gi|45658542|ref|YP_002628.1| hypothetical protein LIC12707 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|34222882|sp|Q8F7K3|RIMP_LEPIN RecName: Full=Ribosome maturation factor rimP gi|51316950|sp|Q72NX1|RIMP_LEPIC RecName: Full=Ribosome maturation factor rimP gi|45601785|gb|AAS71265.1| conserved hypothetical protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 162 Score = 37.4 bits (85), Expect = 0.96, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 20/124 (16%) Query: 62 GNMTLRDCEELSQA-------ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNG 114 G+++L +CE++S+ ISP LD Y L+VSS G +R + D R+ G Sbjct: 48 GSVSLLECEQVSRKLKEELERISPDLD--------YTLKVSSAGAERKLNLPGDLDRFRG 99 Query: 115 HVVACEIVLSSGDKQKL---IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 + +V S + +K I +++ LEK ++G+K + + Q ++ +L Sbjct: 100 --IPIRLVFRSEESEKEQEGIFRVVNRDGDQIVLEKFQKGKKSVVKKQTTLNLKDILKGN 157 Query: 172 LIVT 175 L V Sbjct: 158 LYVN 161 >gi|108799046|ref|YP_639243.1| hypothetical protein Mmcs_2079 [Mycobacterium sp. MCS] gi|119868161|ref|YP_938113.1| hypothetical protein Mkms_2125 [Mycobacterium sp. KMS] gi|126434649|ref|YP_001070340.1| hypothetical protein Mjls_2062 [Mycobacterium sp. JLS] gi|123070305|sp|Q1BA97|RIMP_MYCSS RecName: Full=Ribosome maturation factor rimP gi|259585794|sp|A3PY72|RIMP_MYCSJ RecName: Full=Ribosome maturation factor rimP gi|259585795|sp|A1UER5|RIMP_MYCSK RecName: Full=Ribosome maturation factor rimP gi|108769465|gb|ABG08187.1| protein of unknown function DUF150 [Mycobacterium sp. MCS] gi|119694250|gb|ABL91323.1| protein of unknown function DUF150 [Mycobacterium sp. KMS] gi|126234449|gb|ABN97849.1| protein of unknown function DUF150 [Mycobacterium sp. JLS] Length = 192 Score = 37.4 bits (85), Expect = 0.98, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 4/53 (7%) Query: 90 YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 Y LEV+SPG+DRP+ + + R G V E+ LS G +L G+I + G Sbjct: 90 YVLEVTSPGVDRPLTTEKHYRRARGRKV--ELTLSDG--SQLTGRIGALTADG 138 >gi|86742246|ref|YP_482646.1| hypothetical protein Francci3_3565 [Frankia sp. CcI3] gi|123750811|sp|Q2J725|RIMP_FRASC RecName: Full=Ribosome maturation factor rimP gi|86569108|gb|ABD12917.1| protein of unknown function DUF150 [Frankia sp. CcI3] Length = 268 Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%) Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D + ++ G Y LEV+SPG++RP+ + R G +V + D L G+++ E Sbjct: 107 DGQGLVAGPYVLEVTSPGVERPLTEPRHWRRAIGRLV----TVRDRDGIVLAGRVLSADE 162 Query: 141 TGFFL 145 +G L Sbjct: 163 SGADL 167 >gi|240146878|ref|ZP_04745479.1| protein associated with NUS operon [Roseburia intestinalis L1-82] gi|257200976|gb|EEU99260.1| protein associated with NUS operon [Roseburia intestinalis L1-82] Length = 74 Score = 37.0 bits (84), Expect = 1.2, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 40/61 (65%), Gaps = 2/61 (3%) Query: 28 VIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 +I P+++ M+F V + ++E L+ +++++ G +T+ DCE +++ ++ ILD E+ + Sbjct: 14 LITPILDRMNFELVDVEYVKEGGAWYLRAYIDKE-GGITVNDCEAVAREMNEILDREDFV 72 Query: 87 E 87 E Sbjct: 73 E 73 >gi|294827764|ref|NP_711122.2| hypothetical protein LA_0941 [Leptospira interrogans serovar Lai str. 56601] gi|293385607|gb|AAN48140.2| conserved hypothetical protein [Leptospira interrogans serovar Lai str. 56601] Length = 123 Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 20/124 (16%) Query: 62 GNMTLRDCEELSQA-------ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNG 114 G+++L +CE++S+ ISP LD Y L+VSS G +R + D R+ G Sbjct: 9 GSVSLLECEQVSRKLKEELERISPDLD--------YTLKVSSAGAERKLNLPGDLDRFRG 60 Query: 115 HVVACEIVLSSGDKQKL---IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 + +V S + +K I +++ LEK ++G+K + + Q ++ +L Sbjct: 61 --IPIRLVFRSEESEKEQEGIFRVVNRDGDQIVLEKFQKGKKSVVKKQTTLNLKDILKGN 118 Query: 172 LIVT 175 L V Sbjct: 119 LYVN 122 >gi|86140763|ref|ZP_01059322.1| hypothetical protein MED217_16465 [Leeuwenhoekiella blandensis MED217] gi|85832705|gb|EAQ51154.1| hypothetical protein MED217_16465 [Leeuwenhoekiella blandensis MED217] Length = 154 Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 63/124 (50%), Gaps = 14/124 (11%) Query: 55 IFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNG 114 + ++ D+G ++++DC +S+ + LD E E + LEV S G P+V K + + G Sbjct: 35 VIIDGDEG-VSVQDCINVSRKVEHNLDRE---EEDFSLEVMSAGATEPLVNKRQYKKNEG 90 Query: 115 HVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMN------ELQIAISFDSLL 168 E++L G K K G ++ + G L ++R K++ E + I++D++ Sbjct: 91 R--DLEVILQDGAKIK--GNLIQVHDEGIVLFWKERVPKEVGKGKMTVEKEEVIAYDAIK 146 Query: 169 SARL 172 A++ Sbjct: 147 QAKV 150 >gi|224025209|ref|ZP_03643575.1| hypothetical protein BACCOPRO_01943 [Bacteroides coprophilus DSM 18228] gi|224018445|gb|EEF76443.1| hypothetical protein BACCOPRO_01943 [Bacteroides coprophilus DSM 18228] Length = 155 Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 10/127 (7%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 +I+ V+ +E+ + V + + + ++++I + DG + + DC LS+ + L E Sbjct: 6 EITDVVNKWLEDKEYFLVDVQISADSRIVVEI--DHRDG-VWIDDCVNLSRYLEETLG-E 61 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + G Y LEV S G+ +P LR V + + + D +KL G + SE GF Sbjct: 62 RL--GDYELEVGSAGLGQPF----KVLRQYEAHVGSSVEVCTKDGRKLHGVLQSASEEGF 115 Query: 144 FLEKEKR 150 L E R Sbjct: 116 TLLTEVR 122 >gi|47095906|ref|ZP_00233509.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a F6854] gi|47015652|gb|EAL06582.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a F6854] Length = 101 Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust. Identities = 16/38 (42%), Positives = 26/38 (68%) Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDF 109 +S+ +S +D + I +Y LEVSSPG +RP+ ++ DF Sbjct: 1 MSEKVSEKMDENDPITQNYFLEVSSPGAERPLKKEQDF 38 >gi|317968932|ref|ZP_07970322.1| hypothetical protein SCB02_05303 [Synechococcus sp. CB0205] Length = 122 Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust. Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 3/83 (3%) Query: 50 NLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDF 109 LL+Q+ + D G+++L +C S + ++ +++ Y LEVSSPG+ + DF Sbjct: 2 TLLVQLRLA-DGGDVSLDNCASFSGVLGDAIENSGLLQDPYVLEVSSPGVSEQLSDDRDF 60 Query: 110 LRWNGHVVACEI--VLSSGDKQK 130 + G V+ S GD ++ Sbjct: 61 RSFRGFPVSIRYRDTKSGGDNER 83 >gi|78213594|ref|YP_382373.1| hypothetical protein Syncc9605_2078 [Synechococcus sp. CC9605] gi|123577663|sp|Q3AHW4|RIMP_SYNSC RecName: Full=Ribosome maturation factor rimP gi|78198053|gb|ABB35818.1| conserved hypothetical protein [Synechococcus sp. CC9605] Length = 155 Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust. Identities = 34/141 (24%), Positives = 58/141 (41%), Gaps = 17/141 (12%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDG-NMTLRDCEELSQAISPILD 81 D+ ++ V F I LL + + L++ + G +++L DC S + L+ Sbjct: 8 DLETLATKVAASKGFALCGIQLLTHMSPMTLEVQIRHSSGADVSLDDCAGFSGVLGDALE 67 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 ++ Y LE+SSPGI + DF + G V +Q+L G ++ Sbjct: 68 ASTLLTDAYVLEISSPGIGDQLSSDRDFETFRGFPVEVHHRDKDDSEQRLEGLLL----- 122 Query: 142 GFFLEKEKRGEKDMNELQIAI 162 E+D + LQI I Sbjct: 123 ----------ERDADTLQINI 133 >gi|213864825|ref|ZP_03386944.1| hypothetical protein SentesT_33610 [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 82 Score = 36.6 bits (83), Expect = 1.6, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 27/46 (58%) Query: 90 YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 Y LEVSSPG+DRP+ + R+ G V + ++ +++K G I Sbjct: 4 YNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 49 >gi|157414093|ref|YP_001484959.1| hypothetical protein P9215_17601 [Prochlorococcus marinus str. MIT 9215] gi|166980224|sp|A8G6Z2|RIMP_PROM2 RecName: Full=Ribosome maturation factor rimP gi|157388668|gb|ABV51373.1| DUF150 [Prochlorococcus marinus str. MIT 9215] Length = 155 Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust. Identities = 24/108 (22%), Positives = 54/108 (50%), Gaps = 2/108 (1%) Query: 28 VIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGN-MTLRDCEELSQAISPILDVENI 85 +++ V E + I++ +N +++I +++ +G+ ++L DC + S ++ N+ Sbjct: 12 LLKKVANEWDLKICSINIQTNQNPTVVKIIIKKTNGDDISLEDCALFNAPASEEIENSNL 71 Query: 86 IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 + Y LE+SS G+ + DF + G V ++ + K+ L G Sbjct: 72 LNCSYVLEISSQGVSDELTSDRDFKTFKGFPVNVQLNQKNSKKKFLNG 119 >gi|227504823|ref|ZP_03934872.1| conserved hypothetical protein [Corynebacterium striatum ATCC 6940] gi|227198673|gb|EEI78721.1| conserved hypothetical protein [Corynebacterium striatum ATCC 6940] Length = 188 Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 13/110 (11%) Query: 22 AGDISSVIQPVIEE--MSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDC-EELSQAISP 78 A ++ ++QP++E + V+ + +K+ Q+ + D D EE+S IS Sbjct: 6 AAQLTELLQPLLEPRGLDVEDVKTTKAGKKS---QVIIRIDGDQRPSSDVLEEVSNQISE 62 Query: 79 ILDVE------NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV 122 D + N G Y LEVS+PG+D P+ + R G +VA E+ Sbjct: 63 FFDAKEESGELNFGAG-YTLEVSTPGVDLPLTAPRHWRRNRGRLVAFELT 111 >gi|313829612|gb|EFS67326.1| conserved hypothetical protein [Propionibacterium acnes HL063PA2] gi|315109016|gb|EFT80992.1| conserved hypothetical protein [Propionibacterium acnes HL030PA2] Length = 178 Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 75/165 (45%), Gaps = 11/165 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERD--DGN-MTLRDCEELSQAISPIL 80 ++ +++PV+ ++ ++ ++ + L+++ ++ D DG+ +L + E + IS L Sbjct: 6 LTRLLEPVVSQVGLELDRVDVVPAGRRRLVRVTIDGDGPDGHGPSLDEISEATAEISHCL 65 Query: 81 DVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK----LIGKI 135 D + E Y LEVSS G+ P+ + + R GH+V L+ ++QK G+I Sbjct: 66 DDSGAMGESPYTLEVSSRGVSTPLTQPRHYRRNIGHLV--RFTLNPAEEQKSGETFDGRI 123 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 E LE E K L A+ +V EL R Sbjct: 124 AEAGEEVVTLEVEAENSKPHKPLYTTREVQLADVAKAVVQVELNR 168 >gi|227833357|ref|YP_002835064.1| hypothetical protein cauri_1533 [Corynebacterium aurimucosum ATCC 700975] gi|262184343|ref|ZP_06043764.1| hypothetical protein CaurA7_10158 [Corynebacterium aurimucosum ATCC 700975] gi|254800550|sp|C3PH22|RIMP_CORA7 RecName: Full=Ribosome maturation factor rimP gi|227454373|gb|ACP33126.1| hypothetical protein cauri_1533 [Corynebacterium aurimucosum ATCC 700975] Length = 188 Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 9/77 (11%) Query: 70 EELSQAISPILDVE------NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVL 123 EELSQ IS I D + N G Y LEVS+PG+D P+ + R G +V + Sbjct: 54 EELSQEISEIFDAQEEAGTLNFGAG-YTLEVSTPGVDFPLSASRHWRRNQGRLVGYALAE 112 Query: 124 SSGDKQKLIGKIMGTSE 140 G + + +I SE Sbjct: 113 EPGTTR--VARIGALSE 127 >gi|152965408|ref|YP_001361192.1| hypothetical protein Krad_1440 [Kineococcus radiotolerans SRS30216] gi|189038696|sp|A6W7Y9|RIMP_KINRD RecName: Full=Ribosome maturation factor rimP gi|151359925|gb|ABS02928.1| protein of unknown function DUF150 [Kineococcus radiotolerans SRS30216] Length = 208 Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 4/57 (7%) Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 E Y LEVSSPG+DRP+ + R G +V VL+ G L+ +++ E G Sbjct: 80 EAPYTLEVSSPGVDRPLTTPRHWSRARGRLVRA--VLTDG--TALLVRVVSVDEAGV 132 >gi|314923906|gb|EFS87737.1| conserved hypothetical protein [Propionibacterium acnes HL001PA1] gi|314966034|gb|EFT10133.1| conserved hypothetical protein [Propionibacterium acnes HL082PA2] gi|314981919|gb|EFT26012.1| conserved hypothetical protein [Propionibacterium acnes HL110PA3] gi|315090734|gb|EFT62710.1| conserved hypothetical protein [Propionibacterium acnes HL110PA4] gi|315094982|gb|EFT66958.1| conserved hypothetical protein [Propionibacterium acnes HL060PA1] gi|327328083|gb|EGE69852.1| hypothetical protein HMPREF9341_01135 [Propionibacterium acnes HL103PA1] Length = 178 Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust. Identities = 39/163 (23%), Positives = 74/163 (45%), Gaps = 7/163 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERD--DGN-MTLRDCEELSQAISPIL 80 ++ +++PV+ ++ ++ ++ + L+++ ++ D DG+ +L + E + IS L Sbjct: 6 LTRLLEPVVSQVGLELDRVDVVPAGRRRLVRVTIDGDGPDGHGPSLDEISEATAEISHCL 65 Query: 81 DVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK--QKLIGKIMG 137 D + E Y LEVSS G+ P+ + + R GH+V + + G K + G+I Sbjct: 66 DDSGAMGESPYTLEVSSRGVSTPLTQPRHYRRNIGHLVRFTLNPAEGQKSGETFDGRIAE 125 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 E LE E K + A+ +V EL R Sbjct: 126 AGEEVVTLEVEAENSKPHKPVYTTREVQLADVAKAVVQVELNR 168 >gi|227872000|ref|ZP_03990385.1| conserved hypothetical protein [Oribacterium sinus F0268] gi|227842143|gb|EEJ52388.1| conserved hypothetical protein [Oribacterium sinus F0268] Length = 108 Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 40 SVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGI 99 SV ++ + L +D+ +MT+ DC +S+ +S LD E+ I Y LEV S G Sbjct: 23 SVTYTIEAGTHYLRAFIFRKDEQDMTVNDCAMVSRRLSKWLDKEDFIAEEYILEVCSLGF 82 Query: 100 -DRP 102 D P Sbjct: 83 KDNP 86 >gi|332878282|ref|ZP_08446008.1| hypothetical protein HMPREF9074_01747 [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683733|gb|EGJ56604.1| hypothetical protein HMPREF9074_01747 [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 155 Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 8/110 (7%) Query: 53 LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRW 112 + + ++ D+G + + DC LS+A+ LD E + LEV+S G P V + + Sbjct: 34 ITVVIDGDNG-VGIDDCIALSRAVEAPLDAEG---ADFSLEVTSFGATEPFVLPRQYAKN 89 Query: 113 NGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAI 162 G V +I + G Q+ G + G ++ LE E R K + + +I + Sbjct: 90 VGRTV--QITTTDGKVQE--GVLKGEADGVVTLETETREPKPVGKGKITV 135 >gi|302558073|ref|ZP_07310415.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000] gi|302475691|gb|EFL38784.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000] Length = 173 Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust. Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 8/127 (6%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII-EGHYRLEVSSPGIDRPMVRKS 107 + +L++ V+ D G L ++S+A+S LD + + Y LEV +PG +R + Sbjct: 34 RKRVLRVVVDSDTG-ADLDRIADVSRALSAKLDETDAMGSAEYTLEVGTPGAERLLTEHR 92 Query: 108 DFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSL 167 ++R G +V ++ +L +I+ + G LE G K ++FD + Sbjct: 93 HYVRATGRLVRFQLAEGG----ELDARILRADDEGLDLEVP--GVKGRKATARRLAFDDI 146 Query: 168 LSARLIV 174 AR+ V Sbjct: 147 TRARVQV 153 >gi|308808390|ref|XP_003081505.1| putative aldo/keto reductase [Oryza sativa (ISS) [Ostreococcus tauri] gi|116059968|emb|CAL56027.1| putative aldo/keto reductase [Oryza sativa (ISS) [Ostreococcus tauri] Length = 297 Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 8/92 (8%) Query: 11 YEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCE 70 YE + G +GL+ ++ + + MS R V IS L+ + LL F E N T C+ Sbjct: 117 YEEGVIGAVGLSNYGPKQLRKIHKYMSARGVPISTLQVQYHLLSRFPEL---NGTKETCD 173 Query: 71 ELS---QAISPILDVENIIEGHYRLEVSSPGI 99 EL A SP+ ++ G Y +E PGI Sbjct: 174 ELGIKLIAYSPL--ALGLLTGKYSVENPPPGI 203 >gi|315104206|gb|EFT76182.1| conserved hypothetical protein [Propionibacterium acnes HL050PA2] Length = 245 Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust. Identities = 39/163 (23%), Positives = 74/163 (45%), Gaps = 7/163 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERD--DGN-MTLRDCEELSQAISPIL 80 ++ +++PV+ ++ ++ ++ + L+++ ++ D DG+ +L + E + IS L Sbjct: 73 LTRLLEPVVSQVGLELDRVDVVPAGRRRLVRVTIDGDGPDGHGPSLDEISEATAEISHCL 132 Query: 81 DVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK--QKLIGKIMG 137 D + E Y LEVSS G+ P+ + + R GH+V + + G K + G+I Sbjct: 133 DDSGAMGESPYTLEVSSRGVSTPLTQPRHYRRNIGHLVRFTLNPAEGQKSGETFDGRIAE 192 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 E LE E K + A+ +V EL R Sbjct: 193 AGEEVVTLEVEAENSKPHKPVYTTREVQLADVAKAVVQVELNR 235 >gi|282854641|ref|ZP_06263976.1| conserved hypothetical protein [Propionibacterium acnes J139] gi|282582223|gb|EFB87605.1| conserved hypothetical protein [Propionibacterium acnes J139] Length = 199 Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust. Identities = 39/163 (23%), Positives = 74/163 (45%), Gaps = 7/163 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERD--DGN-MTLRDCEELSQAISPIL 80 ++ +++PV+ ++ ++ ++ + L+++ ++ D DG+ +L + E + IS L Sbjct: 27 LTRLLEPVVSQVGLELDRVDVVPAGRRRLVRVTIDGDGPDGHGPSLDEISEATAEISHCL 86 Query: 81 DVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK--QKLIGKIMG 137 D + E Y LEVSS G+ P+ + + R GH+V + + G K + G+I Sbjct: 87 DDSGAMGESPYTLEVSSRGVSTPLTQPRHYRRNIGHLVRFTLNPAEGQKSGETFDGRIAE 146 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 E LE E K + A+ +V EL R Sbjct: 147 AGEEVVTLEVEAENSKPHKPVYTTREVQLADVAKAVVQVELNR 189 >gi|256824990|ref|YP_003148950.1| hypothetical protein Ksed_11450 [Kytococcus sedentarius DSM 20547] gi|256688383|gb|ACV06185.1| uncharacterized conserved protein [Kytococcus sedentarius DSM 20547] Length = 160 Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Query: 64 MTLRDCEELSQAISPILDVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 +TL E ++ +S +D ++ E Y LEVSSPG+DRP+ F R G V Sbjct: 60 ITLDQVAEATELVSTGIDADDPFGEQPYTLEVSSPGVDRPLTSLEHFRRAVGRRV 114 >gi|259586223|sp|A2C4N8|RIMP_PROM1 RecName: Full=Ribosome maturation factor rimP Length = 156 Score = 35.8 bits (81), Expect = 2.8, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 30/57 (52%) Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 D +T+ DC LSQ I + +I++ + LE+SS GI + + DF + G V Sbjct: 48 DKKVTIDDCSILSQYIDEAIQGSSILDQPFNLEISSEGISDFLTEEKDFQTFKGFPV 104 >gi|325286755|ref|YP_004262545.1| Ribosome maturation factor rimP [Cellulophaga lytica DSM 7489] gi|324322209|gb|ADY29674.1| Ribosome maturation factor rimP [Cellulophaga lytica DSM 7489] Length = 154 Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust. Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 7/102 (6%) Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 D +TL+DC +S+AI LD E E + +EV+S G P+V + + G + + Sbjct: 40 DNGVTLKDCVAVSRAIDHNLDRE---EQDFSVEVASAGASSPLVLPRQYAKNIGRKLEVK 96 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAI 162 + + + G++ +E LE + R +K + + ++ + Sbjct: 97 TI----EGRNFEGQLTAATEETITLEWKAREQKPVGKGKVTV 134 >gi|194335548|ref|YP_002017342.1| protein of unknown function DUF150 [Pelodictyon phaeoclathratiforme BU-1] gi|259586174|sp|B4SCE5|RIMP_PELPB RecName: Full=Ribosome maturation factor rimP gi|194308025|gb|ACF42725.1| protein of unknown function DUF150 [Pelodictyon phaeoclathratiforme BU-1] Length = 173 Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust. Identities = 22/91 (24%), Positives = 48/91 (52%), Gaps = 5/91 (5%) Query: 53 LQIFVERDDGNMTLRDCEELSQAISPIL----DVENIIEGHYRLEVSSPGIDRPMVRKSD 108 ++I ++ DDG + + C +S+ + + D+ ++ ++ L VSSPG+ P++ Sbjct: 40 IEILMDADDG-IRIHQCAYISRRVRERIEGDDDLLELVGENFDLMVSSPGLGEPIIIPRQ 98 Query: 109 FLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 ++R G ++ S+GD +L+G + S Sbjct: 99 YIRHVGKLLQVTYADSNGDPVELVGHLQEVS 129 >gi|296139426|ref|YP_003646669.1| hypothetical protein Tpau_1712 [Tsukamurella paurometabola DSM 20162] gi|296027560|gb|ADG78330.1| protein of unknown function DUF150 [Tsukamurella paurometabola DSM 20162] Length = 190 Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 4/105 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD-VE 83 +S+VI P + + QI + + V D TL +L++ +S +D + Sbjct: 8 VSTVIAPHLADAGLDLEQIRITNAGPKSVIAVVVDSDAGPTLDVLADLARTLSDAVDGAD 67 Query: 84 NIIEGH-YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD 127 ++ G + LEV++PG +RP+ + R G A E L+ GD Sbjct: 68 DVFGGQAFTLEVTTPGAERPLREARHWRRARGRQAAIE--LAGGD 110 >gi|288924203|ref|ZP_06418239.1| protein of unknown function DUF150 [Frankia sp. EUN1f] gi|288344450|gb|EFC78943.1| protein of unknown function DUF150 [Frankia sp. EUN1f] Length = 325 Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 4/58 (6%) Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFL 145 G Y LEV+SPG+DRP+V + R G +V ++ D ++ G+++ + G L Sbjct: 133 GPYVLEVTSPGVDRPLVEPRHWRRAVGRLV----LVRRADGSEVEGRVLSAGDDGADL 186 >gi|213021801|ref|ZP_03336248.1| hypothetical protein Salmonelentericaenterica_03335 [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 59 Score = 35.4 bits (80), Expect = 3.6, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 1/58 (1%) Query: 29 IQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 I +E + + V I + + L+I+++ +DG + + DC ++S +S +LDVE+ I Sbjct: 2 ITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVEDPI 58 >gi|303326258|ref|ZP_07356701.1| transcription elongation factor [Desulfovibrio sp. 3_1_syn3] gi|302864174|gb|EFL87105.1| transcription elongation factor [Desulfovibrio sp. 3_1_syn3] Length = 156 Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust. Identities = 20/89 (22%), Positives = 43/89 (48%), Gaps = 17/89 (19%) Query: 30 QPVIEEMSFRSVQISLLEEKNLLLQIFVERDDG-----------------NMTLRDCEEL 72 +PV+ + + +++ + +++FV+ G + ++ CEE+ Sbjct: 37 EPVVRSLGLVIWGVEVVQAGRMAVRLFVDVPSGAPESLQAADGEENEAPTSASIGQCEEI 96 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDR 101 S+ + L+VE+ + Y LEVS+PG+ R Sbjct: 97 SRHLGLALEVEDAVPSAYVLEVSTPGLTR 125 >gi|329936657|ref|ZP_08286364.1| hypothetical protein SGM_1856 [Streptomyces griseoaurantiacus M045] gi|329303887|gb|EGG47770.1| hypothetical protein SGM_1856 [Streptomyces griseoaurantiacus M045] Length = 179 Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust. Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 5/87 (5%) Query: 61 DGNMTLRDCEELSQAISPILDVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVAC 119 D L ++S+A+S LD + + G Y LEV +PG +R + ++R +V Sbjct: 45 DTGADLDRVADVSRALSAKLDETDAMGAGEYTLEVGTPGAERALTEHRHYVRALDRLVRF 104 Query: 120 EIVLSSGDKQKLIGKIMGTSETGFFLE 146 ++ + +L+ +I+G E G LE Sbjct: 105 QLR----EGGELVARILGVDEEGLDLE 127 >gi|91207995|sp|Q46J16|RIMP_PROMT RecName: Full=Ribosome maturation factor rimP Length = 156 Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 30/57 (52%) Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 D +T+ DC LSQ I + +I++ + LE+SS GI + + DF + G V Sbjct: 48 DKKVTIDDCSILSQYIDEAIQGSSILDQPFNLEISSEGIGDFLTEEKDFQTFKGFPV 104 >gi|50842973|ref|YP_056200.1| hypothetical protein PPA1495 [Propionibacterium acnes KPA171202] gi|289428787|ref|ZP_06430470.1| conserved hypothetical protein [Propionibacterium acnes J165] gi|295131044|ref|YP_003581707.1| hypothetical protein HMPREF0675_4562 [Propionibacterium acnes SK137] gi|81611447|sp|Q6A7M3|RIMP_PROAC RecName: Full=Ribosome maturation factor rimP gi|50840575|gb|AAT83242.1| conserved protein [Propionibacterium acnes KPA171202] gi|289158185|gb|EFD06405.1| conserved hypothetical protein [Propionibacterium acnes J165] gi|291375538|gb|ADD99392.1| conserved hypothetical protein [Propionibacterium acnes SK137] gi|313763590|gb|EFS34954.1| conserved hypothetical protein [Propionibacterium acnes HL013PA1] gi|313773528|gb|EFS39494.1| conserved hypothetical protein [Propionibacterium acnes HL074PA1] gi|313793984|gb|EFS42008.1| conserved hypothetical protein [Propionibacterium acnes HL110PA1] gi|313801371|gb|EFS42622.1| conserved hypothetical protein [Propionibacterium acnes HL110PA2] gi|313807950|gb|EFS46431.1| conserved hypothetical protein [Propionibacterium acnes HL087PA2] gi|313811581|gb|EFS49295.1| conserved hypothetical protein [Propionibacterium acnes HL083PA1] gi|313813359|gb|EFS51073.1| conserved hypothetical protein [Propionibacterium acnes HL025PA1] gi|313816770|gb|EFS54484.1| conserved hypothetical protein [Propionibacterium acnes HL059PA1] gi|313819519|gb|EFS57233.1| conserved hypothetical protein [Propionibacterium acnes HL046PA2] gi|313822157|gb|EFS59871.1| conserved hypothetical protein [Propionibacterium acnes HL036PA1] gi|313823609|gb|EFS61323.1| conserved hypothetical protein [Propionibacterium acnes HL036PA2] gi|313825932|gb|EFS63646.1| conserved hypothetical protein [Propionibacterium acnes HL063PA1] gi|313831321|gb|EFS69035.1| conserved hypothetical protein [Propionibacterium acnes HL007PA1] gi|313834931|gb|EFS72645.1| conserved hypothetical protein [Propionibacterium acnes HL056PA1] gi|313839908|gb|EFS77622.1| conserved hypothetical protein [Propionibacterium acnes HL086PA1] gi|314914744|gb|EFS78575.1| conserved hypothetical protein [Propionibacterium acnes HL005PA4] gi|314919294|gb|EFS83125.1| conserved hypothetical protein [Propionibacterium acnes HL050PA1] gi|314920796|gb|EFS84627.1| conserved hypothetical protein [Propionibacterium acnes HL050PA3] gi|314924648|gb|EFS88479.1| conserved hypothetical protein [Propionibacterium acnes HL036PA3] gi|314930475|gb|EFS94306.1| conserved hypothetical protein [Propionibacterium acnes HL067PA1] gi|314954367|gb|EFS98773.1| conserved hypothetical protein [Propionibacterium acnes HL027PA1] gi|314957447|gb|EFT01550.1| conserved hypothetical protein [Propionibacterium acnes HL002PA1] gi|314962085|gb|EFT06186.1| conserved hypothetical protein [Propionibacterium acnes HL002PA2] gi|314963664|gb|EFT07764.1| conserved hypothetical protein [Propionibacterium acnes HL082PA1] gi|314968508|gb|EFT12606.1| conserved hypothetical protein [Propionibacterium acnes HL037PA1] gi|314974196|gb|EFT18292.1| conserved hypothetical protein [Propionibacterium acnes HL053PA1] gi|314976695|gb|EFT20790.1| conserved hypothetical protein [Propionibacterium acnes HL045PA1] gi|314978821|gb|EFT22915.1| conserved hypothetical protein [Propionibacterium acnes HL072PA2] gi|314984333|gb|EFT28425.1| conserved hypothetical protein [Propionibacterium acnes HL005PA1] gi|314986522|gb|EFT30614.1| conserved hypothetical protein [Propionibacterium acnes HL005PA2] gi|314990881|gb|EFT34972.1| conserved hypothetical protein [Propionibacterium acnes HL005PA3] gi|315079514|gb|EFT51507.1| conserved hypothetical protein [Propionibacterium acnes HL053PA2] gi|315081256|gb|EFT53232.1| conserved hypothetical protein [Propionibacterium acnes HL078PA1] gi|315083454|gb|EFT55430.1| conserved hypothetical protein [Propionibacterium acnes HL027PA2] gi|315087140|gb|EFT59116.1| conserved hypothetical protein [Propionibacterium acnes HL002PA3] gi|315089312|gb|EFT61288.1| conserved hypothetical protein [Propionibacterium acnes HL072PA1] gi|315095335|gb|EFT67311.1| conserved hypothetical protein [Propionibacterium acnes HL038PA1] gi|315099218|gb|EFT71194.1| conserved hypothetical protein [Propionibacterium acnes HL059PA2] gi|315100431|gb|EFT72407.1| conserved hypothetical protein [Propionibacterium acnes HL046PA1] gi|315106775|gb|EFT78751.1| conserved hypothetical protein [Propionibacterium acnes HL030PA1] gi|327328402|gb|EGE70164.1| hypothetical protein HMPREF9338_01419 [Propionibacterium acnes HL096PA2] gi|327329732|gb|EGE71488.1| hypothetical protein HMPREF9337_01796 [Propionibacterium acnes HL096PA3] gi|327334249|gb|EGE75963.1| hypothetical protein HMPREF9344_01150 [Propionibacterium acnes HL097PA1] gi|327444189|gb|EGE90843.1| hypothetical protein HMPREF9571_02320 [Propionibacterium acnes HL043PA2] gi|327444932|gb|EGE91586.1| hypothetical protein HMPREF9570_01994 [Propionibacterium acnes HL043PA1] gi|327446417|gb|EGE93071.1| hypothetical protein HMPREF9568_00999 [Propionibacterium acnes HL013PA2] gi|327451994|gb|EGE98648.1| hypothetical protein HMPREF9584_02200 [Propionibacterium acnes HL092PA1] gi|327454969|gb|EGF01624.1| hypothetical protein HMPREF9581_01157 [Propionibacterium acnes HL087PA3] gi|327457745|gb|EGF04400.1| hypothetical protein HMPREF9586_00321 [Propionibacterium acnes HL083PA2] gi|328752172|gb|EGF65788.1| hypothetical protein HMPREF9563_02441 [Propionibacterium acnes HL020PA1] gi|328755196|gb|EGF68812.1| hypothetical protein HMPREF9579_01223 [Propionibacterium acnes HL087PA1] gi|328758324|gb|EGF71940.1| hypothetical protein HMPREF9588_00964 [Propionibacterium acnes HL025PA2] gi|328760060|gb|EGF73640.1| hypothetical protein HMPREF9343_02215 [Propionibacterium acnes HL099PA1] gi|332675924|gb|AEE72740.1| ribosome maturation factor RimP [Propionibacterium acnes 266] Length = 178 Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust. Identities = 40/165 (24%), Positives = 75/165 (45%), Gaps = 11/165 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERD--DGN-MTLRDCEELSQAISPIL 80 ++ +++PV+ ++ ++ ++ + L+++ ++ D DG+ +L + E + IS L Sbjct: 6 LTRLLEPVVSQVGLELDRVDVVPAGRRRLVRVTIDGDGPDGHGPSLDEISEATAEISHCL 65 Query: 81 DVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK----LIGKI 135 D + E Y LEVSS G+ P+ + + R GH+V L+ ++QK G+I Sbjct: 66 DDSGAMGESPYTLEVSSRGVSTPLTQPRHYRRNIGHLV--RFTLNPAEEQKSGETFDGRI 123 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 E LE E K + A+ +V EL R Sbjct: 124 AEAGEEVVTLEVEAENSKPHKPVYTTREVQLADVAKAVVQVELNR 168 >gi|127511141|ref|YP_001092338.1| 1A family penicillin-binding protein [Shewanella loihica PV-4] gi|126636436|gb|ABO22079.1| penicillin-binding protein, 1A family [Shewanella loihica PV-4] Length = 861 Score = 35.4 bits (80), Expect = 4.3, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 2/76 (2%) Query: 114 GHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 G + A I+ ++G K + I GFFL +EK + + E+ +A+ + LS + I Sbjct: 100 GIIRAAVILATTGKKSQGASTITQQVARGFFLSREKTYIRKIKEIFLALKIEQALSKKEI 159 Query: 174 VTDELLRASLNN--YG 187 +T L R+ L N YG Sbjct: 160 LTLYLNRSFLGNRAYG 175 >gi|213865085|ref|ZP_03387204.1| hypothetical protein SentesT_35167 [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 57 Score = 35.4 bits (80), Expect = 4.4, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 1/57 (1%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 +I +E + + V I + + L+I+++ +DG + + DC ++S +S +LDVE+ Sbjct: 1 MITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVED 56 >gi|320169451|gb|EFW46350.1| predicted protein [Capsaspora owczarzaki ATCC 30864] Length = 413 Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 1/82 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++GD SS+ +PV+ + + V + + LL+ F DD N +R + ++ SP L Sbjct: 22 ISGDSSSITKPVLSQEQVKHVLATYFGIQAELLKEFPSYDDLNYFVRGVGVVVESASPAL 81 Query: 81 -DVENIIEGHYRLEVSSPGIDR 101 +EN Y L++++ G DR Sbjct: 82 AQIENGASHEYVLKINNCGEDR 103 >gi|124026597|ref|YP_001015712.1| hypothetical protein NATL1_18921 [Prochlorococcus marinus str. NATL1A] gi|123961665|gb|ABM76448.1| DUF150 [Prochlorococcus marinus str. NATL1A] Length = 183 Score = 35.0 bits (79), Expect = 4.6, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 30/57 (52%) Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 D +T+ DC LSQ I + +I++ + LE+SS GI + + DF + G V Sbjct: 75 DKKVTIDDCSILSQYIDEAIQGSSILDQPFNLEISSEGISDFLTEEKDFQTFKGFPV 131 >gi|163786552|ref|ZP_02181000.1| hypothetical protein FBALC1_15242 [Flavobacteriales bacterium ALC-1] gi|159878412|gb|EDP72468.1| hypothetical protein FBALC1_15242 [Flavobacteriales bacterium ALC-1] Length = 154 Score = 35.0 bits (79), Expect = 4.9, Method: Compositional matrix adjust. Identities = 27/111 (24%), Positives = 56/111 (50%), Gaps = 8/111 (7%) Query: 53 LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRW 112 ++I ++ D+G + + DC +S+AI +D + E + LEV S G P+ + + Sbjct: 33 IKIVIDGDNG-VLVEDCMYISRAIEHNIDRD---EHDFSLEVLSSGATTPLTLPRQYKKH 88 Query: 113 NGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAIS 163 G ++ + + D Q L GK++ +E G L + R K + + ++ ++ Sbjct: 89 IGR----DLEVKTNDSQSLEGKLIDVNEQGVVLTWKAREPKPVGKGKVTVT 135 >gi|254526613|ref|ZP_05138665.1| hypothetical protein P9202_1265 [Prochlorococcus marinus str. MIT 9202] gi|221538037|gb|EEE40490.1| hypothetical protein P9202_1265 [Prochlorococcus marinus str. MIT 9202] Length = 155 Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust. Identities = 23/108 (21%), Positives = 54/108 (50%), Gaps = 2/108 (1%) Query: 28 VIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGN-MTLRDCEELSQAISPILDVENI 85 +++ V E + +++ +N +++I +++ +G+ ++L DC + S ++ N+ Sbjct: 12 LLKKVANEWDLKICSLNIQTNQNPTVVKITIKKTNGDDISLEDCALFNAPASEEIENSNL 71 Query: 86 IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 + Y LE+SS G+ + DF + G V ++ + K+ L G Sbjct: 72 LNCSYVLEISSQGVSDELTSDRDFKTFKGFPVNVQLNQKNSKKKFLNG 119 >gi|289426404|ref|ZP_06428147.1| conserved hypothetical protein [Propionibacterium acnes SK187] gi|289153132|gb|EFD01850.1| conserved hypothetical protein [Propionibacterium acnes SK187] Length = 197 Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust. Identities = 40/165 (24%), Positives = 75/165 (45%), Gaps = 11/165 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERD--DGN-MTLRDCEELSQAISPIL 80 ++ +++PV+ ++ ++ ++ + L+++ ++ D DG+ +L + E + IS L Sbjct: 25 LTRLLEPVVSQVGLELDRVDVVPAGRRRLVRVTIDGDGPDGHGPSLDEISEATAEISHCL 84 Query: 81 DVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK----LIGKI 135 D + E Y LEVSS G+ P+ + + R GH+V L+ ++QK G+I Sbjct: 85 DDSGAMGESPYTLEVSSRGVSTPLTQPRHYRRNIGHLV--RFTLNPAEEQKSGETFDGRI 142 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 E LE E K + A+ +V EL R Sbjct: 143 AEAGEEVVTLEVEAENSKPHKPVYTTREVQLADVAKAVVQVELNR 187 >gi|239917226|ref|YP_002956784.1| hypothetical protein Mlut_06980 [Micrococcus luteus NCTC 2665] gi|281414300|ref|ZP_06246042.1| hypothetical protein MlutN2_03688 [Micrococcus luteus NCTC 2665] gi|239838433|gb|ACS30230.1| uncharacterized conserved protein [Micrococcus luteus NCTC 2665] Length = 195 Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust. Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 7/76 (9%) Query: 53 LQIFVERDDGN--MTLRDCEELSQAISPILD-----VENIIEGHYRLEVSSPGIDRPMVR 105 +++ ++R G ++L D LS +S LD V + G Y LEV++ G+DRP+ Sbjct: 42 VEVVLDRASGTYGLSLDDVARLSGRVSAALDALGDHVPGVGAGEYLLEVTTAGVDRPLTE 101 Query: 106 KSDFLRWNGHVVACEI 121 R G +V + Sbjct: 102 PRHLARNVGRLVEVSV 117 >gi|163839409|ref|YP_001623814.1| putative cytoplasmic protein [Renibacterium salmoninarum ATCC 33209] gi|162952885|gb|ABY22400.1| hypothetical cytosolic protein [Renibacterium salmoninarum ATCC 33209] Length = 149 Score = 34.7 bits (78), Expect = 6.3, Method: Compositional matrix adjust. Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 2/108 (1%) Query: 58 ERDDGNMTLRDCEELSQAISPILDVENIIEGH-YRLEVSSPGIDRPMVRKSDFLRWNGHV 116 E G++ L E+S A+S LD + +G + LEVSSPG+ R + + R G + Sbjct: 9 EDQQGSVGLDKIAEVSLALSSALDADPEDDGRPFDLEVSSPGVGRSLTELRHWRRALGRM 68 Query: 117 VACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISF 164 ++ S + L G+I+ S G + E +K M Q F Sbjct: 69 ATLKLRKSE-QGESLFGRIIEVSPDGVKIRPELPVKKGMKPKQAEPEF 115 >gi|72382860|ref|YP_292215.1| hypothetical protein PMN2A_1022 [Prochlorococcus marinus str. NATL2A] gi|72002710|gb|AAZ58512.1| conserved hypothetical protein [Prochlorococcus marinus str. NATL2A] Length = 183 Score = 34.7 bits (78), Expect = 6.3, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 30/57 (52%) Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 D +T+ DC LSQ I + +I++ + LE+SS GI + + DF + G V Sbjct: 75 DKKVTIDDCSILSQYIDEAIQGSSILDQPFNLEISSEGIGDFLTEEKDFQTFKGFPV 131 >gi|111023600|ref|YP_706572.1| hypothetical protein RHA1_ro06641 [Rhodococcus jostii RHA1] gi|123339654|sp|Q0S222|RIMP_RHOSR RecName: Full=Ribosome maturation factor rimP gi|110823130|gb|ABG98414.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length = 190 Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 2/62 (3%) Query: 46 LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD-VENIIEGHYRLEVSSPGIDRPMV 104 L ++ ++I V+ D G + L LS IS + D V + E Y LEV+SPGI RP+ Sbjct: 31 LAGRHSAVRIMVDSDAG-LELDAVANLSHEISEVFDSVSDFGESPYTLEVTSPGIGRPLT 89 Query: 105 RK 106 + Sbjct: 90 HE 91 >gi|21673078|ref|NP_661143.1| hypothetical protein CT0239 [Chlorobium tepidum TLS] gi|34222902|sp|Q8KFT3|RIMP_CHLTE RecName: Full=Ribosome maturation factor rimP gi|21646149|gb|AAM71485.1| conserved hypothetical protein [Chlorobium tepidum TLS] Length = 173 Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust. Identities = 33/138 (23%), Positives = 65/138 (47%), Gaps = 15/138 (10%) Query: 53 LQIFVERDDGNMTLRDCEELSQAISPILDV----ENIIEGHYRLEVSSPGIDRPMVRKSD 108 +++ V+ D G +++ C +LS+AI L+ + G + L VSSPGI P+ + Sbjct: 39 IELTVDTDKG-VSIDQCAKLSRAIRARLEACEEDSMLSSGEFDLMVSSPGIGEPIQVQRQ 97 Query: 109 FLRWNGHVVACEIVLSSGDKQKLIGKIMGTS------ETGFFLE--KEKRGEKDMNELQI 160 +LR G ++ + +++ GK++ + + +E KE R ++ E + Sbjct: 98 YLRHLGRLIRVNYLDEEEQPKEITGKLLEAAVGPEAEQPSITIEAVKEGRKKRTAGEPPV 157 Query: 161 AISFDSLLSARLIVTDEL 178 I ++ R +V EL Sbjct: 158 TIRLADVV--RAVVQTEL 173 >gi|313836821|gb|EFS74535.1| conserved hypothetical protein [Propionibacterium acnes HL037PA2] gi|314929770|gb|EFS93601.1| conserved hypothetical protein [Propionibacterium acnes HL044PA1] gi|314972199|gb|EFT16296.1| conserved hypothetical protein [Propionibacterium acnes HL037PA3] gi|328907627|gb|EGG27391.1| hypothetical protein PA08_0657 [Propionibacterium sp. P08] Length = 178 Score = 34.3 bits (77), Expect = 8.4, Method: Compositional matrix adjust. Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 7/163 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERD--DGN-MTLRDCEELSQAISPIL 80 ++S+++P + + + ++ + L+++ V+ D DG+ +L + E + IS L Sbjct: 6 LTSLLEPAVSRLGLELDCVDVVPAGRRRLVRVTVDGDGPDGHGPSLDEISEATAEISRCL 65 Query: 81 DVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK--QKLIGKIMG 137 D + + E Y LEVSS G+ P+ + + R GH+V + S G + G+I Sbjct: 66 DDSDAMGESPYTLEVSSRGVSTPLTQPRHYRRNIGHLVRFTLNPSEGQTSGEAFDGRITE 125 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 E LE E K + A+ +V EL R Sbjct: 126 AGEEVVTLEVEAGNSKPHKPVYTTREVQLADVAKAVVQVELNR 168 >gi|123969227|ref|YP_001010085.1| hypothetical protein A9601_16951 [Prochlorococcus marinus str. AS9601] gi|166980197|sp|A2BT67|RIMP_PROMS RecName: Full=Ribosome maturation factor rimP gi|123199337|gb|ABM70978.1| DUF150 [Prochlorococcus marinus str. AS9601] Length = 155 Score = 34.3 bits (77), Expect = 8.6, Method: Compositional matrix adjust. Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Query: 51 LLLQIFVERDDGN-MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDF 109 ++++I + + +G+ ++L DC + S ++ N++ Y LE+SS G+ + + DF Sbjct: 36 VVIEITIRKTNGDDISLDDCALFNTPASDEIEKSNLLNCSYVLEISSQGVSDELTSERDF 95 Query: 110 LRWNGHVVACEI 121 + G V E+ Sbjct: 96 KTFKGFPVNVEL 107 Searching..................................................done Results from round 2 >gi|254780789|ref|YP_003065202.1| hypothetical protein CLIBASIA_03400 [Candidatus Liberibacter asiaticus str. psy62] gi|254040466|gb|ACT57262.1| hypothetical protein CLIBASIA_03400 [Candidatus Liberibacter asiaticus str. psy62] Length = 192 Score = 250 bits (640), Expect = 6e-65, Method: Composition-based stats. Identities = 192/192 (100%), Positives = 192/192 (100%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD Sbjct: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE Sbjct: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR Sbjct: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 Query: 181 ASLNNYGSYAGL 192 ASLNNYGSYAGL Sbjct: 181 ASLNNYGSYAGL 192 >gi|209883665|ref|YP_002287522.1| hypothetical protein OCAR_4512 [Oligotropha carboxidovorans OM5] gi|226706198|sp|B6JCS7|RIMP_OLICO RecName: Full=Ribosome maturation factor rimP gi|209871861|gb|ACI91657.1| hypothetical protein OCAR_4512 [Oligotropha carboxidovorans OM5] Length = 260 Score = 220 bits (562), Expect = 7e-56, Method: Composition-based stats. Identities = 61/186 (32%), Positives = 106/186 (56%), Gaps = 1/186 (0%) Query: 5 HFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNM 64 S EPR+ + G+A ++++ +PV+E + +R V+I + E +QI ER DG M Sbjct: 9 ETATSTAEPRLVVEPGVAARVAAIAEPVLEGLGYRLVRIKISGEAGCTVQIMAERPDGTM 68 Query: 65 TLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS 124 + DCE +S+A+SP++DV + I+ YRLE+SSPGIDRP+VR+SDF R+ GH+V E+ Sbjct: 69 LIDDCEAVSKALSPVMDVADPIQRAYRLEISSPGIDRPLVRQSDFERYTGHLVKIEMAAP 128 Query: 125 SGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNEL-QIAISFDSLLSARLIVTDELLRASL 183 +++ G + G + + ++ + + + + SA L++TD+L+ S+ Sbjct: 129 HEGRKRFRGTLQGIEDNLVRITRDDAKSHEGAQPADARLPLADIASAHLVLTDQLIAESM 188 Query: 184 NNYGSY 189 Sbjct: 189 RRGRDA 194 >gi|49473873|ref|YP_031915.1| hypothetical protein BQ02060 [Bartonella quintana str. Toulouse] gi|51316597|sp|Q6G0N9|RIMP_BARQU RecName: Full=Ribosome maturation factor rimP gi|49239376|emb|CAF25709.1| hypothetical protein BQ02060 [Bartonella quintana str. Toulouse] Length = 216 Score = 219 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 74/188 (39%), Positives = 118/188 (62%), Gaps = 2/188 (1%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 M T ++ EPR+F + G+ +++++ P+++ + FR V++ LL + L LQI VER Sbjct: 9 MRKTEKMNDIDEPRLFEETGIEAFVAALVIPLLKPLDFRLVRVKLLGQNGLTLQIMVERA 68 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 DG+MT+ DCE +S+ +S +LDV+N+IE Y LE+SSPGIDRP+VRKSDF W GH+ E Sbjct: 69 DGSMTIEDCETVSRTVSHLLDVQNVIERKYHLEISSPGIDRPLVRKSDFFHWQGHIAKIE 128 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 ++ ++K G + ++ G L +K + IAI FD+++ A L++TDEL+R Sbjct: 129 TKITIDGRKKFRGILANITQEGLTLNTDKAAY--GEAMYIAIPFDNIIDAHLVLTDELIR 186 Query: 181 ASLNNYGS 188 +L Sbjct: 187 NALKKNKD 194 >gi|327192407|gb|EGE59367.1| hypothetical protein RHECNPAF_224004 [Rhizobium etli CNPAF512] Length = 201 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 80/187 (42%), Positives = 124/187 (66%), Gaps = 2/187 (1%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 M ++ EPR+ + GL ++ +I+PV+ M FR +++ +L + + +Q+ ER+ Sbjct: 1 MSDMTNADNELEPRLITETGLDQRLADIIEPVLVGMGFRLIRVRMLNQNGMTMQVMAERN 60 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 DG MT++DCEE+S AISP+LDVE+ I+ Y LEVSSPGIDRPMVRKSDF+RW GH+V CE Sbjct: 61 DGTMTVQDCEEVSMAISPVLDVEDPIDKEYHLEVSSPGIDRPMVRKSDFVRWQGHLVKCE 120 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 + G++++ GKI+ GF LE+++ E +++I F +L A+LI+TD+L+R Sbjct: 121 TSIMIGNRKRFRGKIVEADADGFTLERDQIAY--GEEPKVSIPFTALSDAKLILTDDLIR 178 Query: 181 ASLNNYG 187 +L Sbjct: 179 DALRADK 185 >gi|15963989|ref|NP_384342.1| hypothetical protein SMc02911 [Sinorhizobium meliloti 1021] gi|307306401|ref|ZP_07586145.1| protein of unknown function DUF150 [Sinorhizobium meliloti BL225C] gi|307319288|ref|ZP_07598717.1| protein of unknown function DUF150 [Sinorhizobium meliloti AK83] gi|34222989|sp|Q92SW6|RIMP_RHIME RecName: Full=Ribosome maturation factor rimP gi|15073165|emb|CAC41673.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021] gi|306895124|gb|EFN25881.1| protein of unknown function DUF150 [Sinorhizobium meliloti AK83] gi|306902243|gb|EFN32840.1| protein of unknown function DUF150 [Sinorhizobium meliloti BL225C] Length = 205 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 84/181 (46%), Positives = 120/181 (66%), Gaps = 2/181 (1%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 M T + EPR+ + GL ++ +I+PV+ +M FR V++ + + L LQ+ ER+ Sbjct: 1 MSDTTTAENTNEPRLITETGLDRRVADIIEPVLVDMGFRLVRVRMSGQNGLTLQVMTERN 60 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 DG MT+ DCEE+S+AISP+LDVE+ I+ Y LEVSSPGIDRPMVR+SDF+RW GH+V CE Sbjct: 61 DGTMTVEDCEEVSKAISPVLDVEDPIDKAYHLEVSSPGIDRPMVRRSDFIRWQGHLVKCE 120 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 + +++ GKI+ E GF LE+++ E +AI F +L ARLI+TDEL+R Sbjct: 121 TSVMVDGRKRFRGKIVSVDEDGFRLERDQPAY--GEEAAVAIPFTALSEARLILTDELIR 178 Query: 181 A 181 Sbjct: 179 D 179 >gi|222084329|ref|YP_002542858.1| hypothetical protein Arad_0177 [Agrobacterium radiobacter K84] gi|221721777|gb|ACM24933.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 246 Score = 217 bits (554), Expect = 6e-55, Method: Composition-based stats. Identities = 79/191 (41%), Positives = 123/191 (64%), Gaps = 2/191 (1%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 + + EPR+ + GL I+++I+PVI M +R V++ L+ + L LQ+ ER+ Sbjct: 46 LSEVTNADNINEPRLIVETGLDQRIAAIIEPVIVGMDYRLVRVRLMNQNGLTLQVMAERN 105 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 DG+M ++ CEE+S AISP+LDVE+ ++ Y LEVSSPGIDRPMVRKSDF+RWNGH+V CE Sbjct: 106 DGSMNVQGCEEISTAISPVLDVEDPVDKAYHLEVSSPGIDRPMVRKSDFVRWNGHIVKCE 165 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 + ++++ GKI ++ GF +E+++ E ++ I F +L A+LI+TD+L+R Sbjct: 166 TSILVDNRKRFRGKITDVNDDGFTIERDQVAY--GEEPKVTIPFSTLAEAKLILTDDLIR 223 Query: 181 ASLNNYGSYAG 191 +L Sbjct: 224 DALRADKQAKA 234 >gi|154244253|ref|YP_001415211.1| hypothetical protein Xaut_0296 [Xanthobacter autotrophicus Py2] gi|259645219|sp|A7IC11|RIMP_XANP2 RecName: Full=Ribosome maturation factor rimP gi|154158338|gb|ABS65554.1| protein of unknown function DUF150 [Xanthobacter autotrophicus Py2] Length = 286 Score = 217 bits (553), Expect = 7e-55, Method: Composition-based stats. Identities = 62/185 (33%), Positives = 103/185 (55%), Gaps = 2/185 (1%) Query: 6 FLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMT 65 L EPR+ + G+A ++++ V+ + +R V++ + LQI ER DG M+ Sbjct: 7 VLDDPNEPRLITETGVAARVAAIASGVLGALGYRLVRVKVTNRDGGTLQIMAERPDGTMS 66 Query: 66 LRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS 125 + DCE S+A+SP+LDVE+ I YRLE+SSPGIDRP+VR+SDF+RW GH V E+ Sbjct: 67 IDDCEAASRALSPVLDVEDPISSAYRLEMSSPGIDRPLVRQSDFVRWAGHEVKVEMARPV 126 Query: 126 GDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 +++ G ++G + + + E + + + A+L++TD L+R +L Sbjct: 127 DGRKRFRGILIGAEDGIAVVRRLDA--PATEEPTVRLPVADIHDAKLMLTDALIREALRA 184 Query: 186 YGSYA 190 + Sbjct: 185 AKAAG 189 >gi|259417818|ref|ZP_05741737.1| hypothetical protein SCH4B_3234 [Silicibacter sp. TrichCH4B] gi|259346724|gb|EEW58538.1| hypothetical protein SCH4B_3234 [Silicibacter sp. TrichCH4B] Length = 244 Score = 217 bits (553), Expect = 8e-55, Method: Composition-based stats. Identities = 58/178 (32%), Positives = 94/178 (52%), Gaps = 4/178 (2%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ +I PVIE++ + V+I L+ K LQI +R DG + + DC +S Sbjct: 46 LIAKAAIDRRLAEIITPVIEDLGYELVRIRLMSGKATTLQIMADRPDGGIEVDDCAAISN 105 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S LDVE+ I Y LEVSSPGIDRP+ R DF + G+ E +++ G+ Sbjct: 106 AVSATLDVEDPILDAYTLEVSSPGIDRPLTRLKDFDMFEGYEAKLETADLIDGRRRFKGE 165 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + G + + E+ GE + I + FD L A+L++TD+L++ L + L Sbjct: 166 LAGIEDDEVLINIEEHGET----VTIGLKFDWLSDAKLVLTDDLIKEMLRQRKAAGVL 219 >gi|315122011|ref|YP_004062500.1| hypothetical protein CKC_01305 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495413|gb|ADR52012.1| hypothetical protein CKC_01305 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 186 Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 134/186 (72%), Positives = 159/186 (85%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 MESTH SKYEPRIFGD+GL D+S++IQPVIEEM FR VQ+SLLEE+NL+LQI VERD Sbjct: 1 MESTHVFCSKYEPRIFGDVGLGQDVSNIIQPVIEEMGFRIVQVSLLEERNLILQILVERD 60 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 +G MTL DCEE+S+AISPILDVENIIE HY+LE+SSPGI+RPMVRKSDF RWNGH+VACE Sbjct: 61 NGTMTLCDCEEVSKAISPILDVENIIEEHYQLEISSPGINRPMVRKSDFERWNGHIVACE 120 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 + SSGDK+KL+GKI+G S+ FFLEK++ KD QIA+SFDSLLSA+L++TDELL Sbjct: 121 VASSSGDKKKLVGKIVGKSDLDFFLEKKEEDLKDAGVSQIAVSFDSLLSAKLVITDELLC 180 Query: 181 ASLNNY 186 ASLN Sbjct: 181 ASLNRK 186 >gi|190889788|ref|YP_001976330.1| hypothetical protein RHECIAT_CH0000156 [Rhizobium etli CIAT 652] gi|259586183|sp|B3PXE6|RIMP_RHIE6 RecName: Full=Ribosome maturation factor rimP gi|190695067|gb|ACE89152.1| hypothetical conserved protein [Rhizobium etli CIAT 652] Length = 198 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 79/181 (43%), Positives = 123/181 (67%), Gaps = 2/181 (1%) Query: 7 LHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTL 66 ++ EPR+ + GL ++ +I+PV+ M FR +++ +L + + +Q+ ER+DG MT+ Sbjct: 4 ADNELEPRLITETGLDQRLADIIEPVLVGMGFRLIRVRMLNQNGMTMQVMAERNDGTMTV 63 Query: 67 RDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 +DCEE+S AISP+LDVE+ I+ Y LEVSSPGIDRPMVRKSDF+RW GH+V CE + G Sbjct: 64 QDCEEVSMAISPVLDVEDPIDKEYHLEVSSPGIDRPMVRKSDFVRWQGHLVKCETSIMIG 123 Query: 127 DKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNY 186 ++++ GKI+ GF LE+++ E +++I F +L A+LI+TD+L+R +L Sbjct: 124 NRKRFRGKIVEADADGFTLERDQIAY--GEEPKVSIPFTALSDAKLILTDDLIRDALRAD 181 Query: 187 G 187 Sbjct: 182 K 182 >gi|163733004|ref|ZP_02140448.1| hypothetical protein RLO149_10100 [Roseobacter litoralis Och 149] gi|161393539|gb|EDQ17864.1| hypothetical protein RLO149_10100 [Roseobacter litoralis Och 149] Length = 231 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 58/178 (32%), Positives = 93/178 (52%), Gaps = 8/178 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ +I PVIE+M F V++ L+ K+ +LQI ++ DG + + DC E+SQ Sbjct: 40 LIAKAAIDRRMAEIITPVIEDMGFELVRVRLMSGKSTILQIMADKPDGGIEVDDCAEISQ 99 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S +LDVE+ I Y LEVSSPGIDRP+ R DF + G+ E +++ G Sbjct: 100 AVSAVLDVEDPILDEYTLEVSSPGIDRPLTRLKDFEMFEGYEAKIETGEMIDGRRRFKGA 159 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + G + E E I + FD L A+L++TD+L++ L + Sbjct: 160 LAGVENDEVLINVE--------EGTIGLKFDWLSDAKLVLTDDLIKEMLRQRKAAGAF 209 >gi|118590497|ref|ZP_01547899.1| hypothetical protein SIAM614_02941 [Stappia aggregata IAM 12614] gi|118436960|gb|EAV43599.1| hypothetical protein SIAM614_02941 [Stappia aggregata IAM 12614] Length = 197 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 66/181 (36%), Positives = 109/181 (60%), Gaps = 2/181 (1%) Query: 9 SKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRD 68 S +EPRI + GL ++++++PVIE++ +R V+ + + LQI ER DG MT+ D Sbjct: 2 SAHEPRIVTEQGLDARVAAIVEPVIEDLGYRLVRTKISAQNGCTLQIMAERPDGTMTVED 61 Query: 69 CEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 CE +S+A+SP LDVE+ I Y LEVSSPGIDRP+VR DF RW GH + E+ + + Sbjct: 62 CETVSRAVSPALDVEDPINRAYHLEVSSPGIDRPLVRAGDFNRWAGHELKVEMAVMLDGR 121 Query: 129 QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGS 188 ++ G ++G + ++ E +A+ +++ A+L++TD+L+ A+L + Sbjct: 122 KRFRGTLLGAENGMASIRLPD--VREGEEDTVALPLENIGEAKLVLTDDLITAALQAEKA 179 Query: 189 Y 189 Sbjct: 180 A 180 >gi|158421641|ref|YP_001522933.1| hypothetical protein AZC_0017 [Azorhizobium caulinodans ORS 571] gi|158328530|dbj|BAF86015.1| uncharacterized protein [Azorhizobium caulinodans ORS 571] Length = 329 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 66/189 (34%), Positives = 109/189 (57%), Gaps = 2/189 (1%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 M T EPR+ + G+A I++++ PV+ +++ R V++ + QI ER Sbjct: 39 MNETVEALDPNEPRLITESGVAARIAAIVTPVLADLNLRLVRVKVTARDGGTCQIMAERP 98 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 DG+MT+ DCE S+AISP+LDVE+ I G YRLE+SSPGIDRP+VR +DF RW GH V E Sbjct: 99 DGSMTIDDCEAASRAISPVLDVEDPITGAYRLEISSPGIDRPLVRLTDFDRWAGHEVKVE 158 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 + + +++ G ++GT +++ E ++++ + A+L++TD L+ Sbjct: 159 MAVPVDGRKRFRGILIGTRAELAVVKRTDA--PKGEEPEVSLPVADIGEAKLVLTDALIT 216 Query: 181 ASLNNYGSY 189 +L + Sbjct: 217 EALRRAKAA 225 >gi|49475030|ref|YP_033071.1| hypothetical protein BH02180 [Bartonella henselae str. Houston-1] gi|51316602|sp|Q6G4W4|RIMP_BARHE RecName: Full=Ribosome maturation factor rimP gi|49237835|emb|CAF27030.1| hypothetical protein BH02180 [Bartonella henselae str. Houston-1] Length = 216 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 76/188 (40%), Positives = 115/188 (61%), Gaps = 2/188 (1%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 M T + EPR+F + G+ I++ + P+++ + FR V++ LL L LQI VER Sbjct: 9 MSKTERISDIDEPRLFEENGVEAHIAAFVMPLLKPLGFRLVRVKLLGLNGLTLQIMVERP 68 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 DG+MT+ DCE +S+ +SP+LDV+N+IE Y LE+SSPGIDRP+VRKSDF W GH+ E Sbjct: 69 DGSMTVEDCETVSRTVSPLLDVQNVIERKYHLEISSPGIDRPLVRKSDFFHWQGHIAKIE 128 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 + ++K G + ++ GF L +K + I+I FD ++ A L++TDEL+R Sbjct: 129 TKIILEGRRKFRGTLTNITQDGFTLNTDKAAY--GESMYISIPFDDIIDAHLVLTDELIR 186 Query: 181 ASLNNYGS 188 +L Sbjct: 187 DALKKNKD 194 >gi|254510275|ref|ZP_05122342.1| conserved hypothetical protein [Rhodobacteraceae bacterium KLH11] gi|221533986|gb|EEE36974.1| conserved hypothetical protein [Rhodobacteraceae bacterium KLH11] Length = 232 Score = 214 bits (547), Expect = 3e-54, Method: Composition-based stats. Identities = 55/190 (28%), Positives = 93/190 (48%), Gaps = 4/190 (2%) Query: 3 STHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDG 62 + + + + ++ +I PVIE++ + V+I L+ K +QI ++ DG Sbjct: 29 PDDRVENLMTNNLIAKAAIDRRLAEIITPVIEDLGYELVRIRLMSGKTTTMQIMADKPDG 88 Query: 63 NMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV 122 + + DC E+S A+S LDVE+ I Y LEVSSPGIDRP+ R DF + G+ E Sbjct: 89 GIEVDDCAEISNAVSATLDVEDPILDAYTLEVSSPGIDRPLTRLKDFETFEGYEAKIETA 148 Query: 123 LSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS 182 +++ G++ G + + E + I + FD L A+L++TD+L++ Sbjct: 149 ELIDGRRRFKGELAGIEGDEVLINIPEGDET----ITIGLQFDWLSDAKLVLTDDLIKEM 204 Query: 183 LNNYGSYAGL 192 L L Sbjct: 205 LRQRKDAGAL 214 >gi|170750128|ref|YP_001756388.1| hypothetical protein Mrad2831_3730 [Methylobacterium radiotolerans JCM 2831] gi|259585788|sp|B1LX00|RIMP_METRJ RecName: Full=Ribosome maturation factor rimP gi|170656650|gb|ACB25705.1| protein of unknown function DUF150 [Methylobacterium radiotolerans JCM 2831] Length = 257 Score = 214 bits (545), Expect = 6e-54, Method: Composition-based stats. Identities = 66/187 (35%), Positives = 100/187 (53%) Query: 3 STHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDG 62 S+ E R+ + G+A ++ I+ + + FR V++ + +QI ER DG Sbjct: 2 SSEIEADLSEKRLVREAGVAARVAQAIEGPLAGLGFRLVRVRMSNVNGCTVQIMAERPDG 61 Query: 63 NMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV 122 T+ DCE +S+AISPILDV++ + G Y LEVSSPGIDRP+VR SDF RW G+ E+ Sbjct: 62 TFTIDDCEAVSRAISPILDVDDPVGGAYNLEVSSPGIDRPLVRVSDFARWAGYEAKVELS 121 Query: 123 LSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS 182 +++ G + TG + + K+ +I + L A L++TDEL+R S Sbjct: 122 PPLDGRKRFRGILGAPDPTGTTVPIDLPDVKEGLPSRIDLPLKDLAEAHLVLTDELIRES 181 Query: 183 LNNYGSY 189 L G Sbjct: 182 LRRGGPP 188 >gi|220924483|ref|YP_002499785.1| hypothetical protein Mnod_4615 [Methylobacterium nodulans ORS 2060] gi|219949090|gb|ACL59482.1| protein of unknown function DUF150 [Methylobacterium nodulans ORS 2060] Length = 238 Score = 214 bits (545), Expect = 6e-54, Method: Composition-based stats. Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 2/187 (1%) Query: 3 STHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDG 62 H E R+ + G+A ++ +++P +E + FR V++ + + +QI ER DG Sbjct: 40 PDHHPADAAEKRLITETGVAARVAQIVEPSLEGLGFRLVRVRVTGQNGCTVQIMAERPDG 99 Query: 63 NMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV 122 MT+ DCE +S+ ISP+LDV++ I Y LE+SSPGIDRP+VR DF RW GH E+ Sbjct: 100 TMTVEDCESVSRTISPLLDVDDPIGRAYHLEISSPGIDRPLVRVGDFARWAGHEAKVELT 159 Query: 123 LSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS 182 + +++ G I ++ E + + + A L++TD L+R S Sbjct: 160 VPLEGRKRFRGIIRAPEGESVRIDLPDAKEGTPASYDLRLR--DIGEAHLVLTDALIRES 217 Query: 183 LNNYGSY 189 L + Sbjct: 218 LRRGSAP 224 >gi|86355779|ref|YP_467671.1| hypothetical protein RHE_CH00119 [Rhizobium etli CFN 42] gi|123513435|sp|Q2KDZ2|RIMP_RHIEC RecName: Full=Ribosome maturation factor rimP gi|86279881|gb|ABC88944.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 198 Score = 214 bits (545), Expect = 7e-54, Method: Composition-based stats. Identities = 79/181 (43%), Positives = 121/181 (66%), Gaps = 2/181 (1%) Query: 7 LHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTL 66 ++ EPR+ + GL ++ +I+PV+ M FR +++ +L + +Q+ ER+DG MT+ Sbjct: 4 ADNELEPRLITETGLDQRLADIIEPVLVGMGFRLIRVRMLNQNGATMQVMAERNDGTMTV 63 Query: 67 RDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 +DCEE+S AISP+LDVE+ I+ Y LEVSSPGIDRPMVRKSDF+RW GH+V CE + G Sbjct: 64 QDCEEVSMAISPVLDVEDPIDKEYHLEVSSPGIDRPMVRKSDFVRWQGHLVKCETSIMIG 123 Query: 127 DKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNY 186 ++++ GKI+ GF LE+++ E ++ I F +L A+LI+TD+L+R +L Sbjct: 124 NRKRFRGKIVEADADGFTLERDQVAY--GEEQKVIIPFTALSDAKLILTDDLIRDALRAD 181 Query: 187 G 187 Sbjct: 182 K 182 >gi|91974716|ref|YP_567375.1| hypothetical protein RPD_0234 [Rhodopseudomonas palustris BisB5] gi|123749481|sp|Q13EL5|RIMP_RHOPS RecName: Full=Ribosome maturation factor rimP gi|91681172|gb|ABE37474.1| protein of unknown function DUF150 [Rhodopseudomonas palustris BisB5] Length = 262 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 65/184 (35%), Positives = 107/184 (58%), Gaps = 2/184 (1%) Query: 6 FLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMT 65 + EPR+ + G+A ++V +PV++ M +R V+I + E +QI ER DG M Sbjct: 10 VPDTLAEPRLVVEPGVAARFAAVAEPVLQAMGYRLVRIKVSGEAGCTVQIMAERPDGTML 69 Query: 66 LRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS 125 + DCE +S+A+SP+LDV + I+ YRLE+SSPGIDRP+VR SDF R++GH+V E+ + Sbjct: 70 IDDCEAVSRALSPVLDVTDPIDRAYRLEISSPGIDRPLVRSSDFARYSGHLVKIEMAVPH 129 Query: 126 GDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 +++ G + G +++E G + + + + ARL++TDEL+ S+ Sbjct: 130 QGRKRYRGLLDGVEGDAIRIQRE--GVTKDEDPLVLLPMHDIGDARLVLTDELVAESMRR 187 Query: 186 YGSY 189 Sbjct: 188 GKQA 191 >gi|325291534|ref|YP_004277398.1| hypothetical protein AGROH133_02929 [Agrobacterium sp. H13-3] gi|325059387|gb|ADY63078.1| hypothetical protein AGROH133_02929 [Agrobacterium sp. H13-3] Length = 198 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 75/178 (42%), Positives = 114/178 (64%), Gaps = 2/178 (1%) Query: 7 LHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTL 66 + +EPR+ + G+ I+ +I+PV+ M + V++ L + + LQ+ ER+DG MT+ Sbjct: 2 ADTVHEPRLITETGIDQRIAEIIEPVLTGMGYLLVRVRLSNQNGMTLQVMAEREDGTMTV 61 Query: 67 RDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 CE +S AISP+LDVE+ ++ Y LEVSSPGIDRPMVRKSDF RW GH+V E + Sbjct: 62 EGCEAVSMAISPVLDVEDPVDKAYHLEVSSPGIDRPMVRKSDFTRWQGHLVKAETSILVE 121 Query: 127 DKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLN 184 ++++ GKI+ GF LE+++ D E + I F +L A+LI+TD+L+R +L Sbjct: 122 NRKRFRGKIVEVDADGFKLERDQIAYGD--EPTVTIPFSALSDAKLILTDDLIRDALR 177 >gi|240849884|ref|YP_002971272.1| hypothetical protein Bgr_02280 [Bartonella grahamii as4aup] gi|240267007|gb|ACS50595.1| hypothetical protein Bgr_02280 [Bartonella grahamii as4aup] Length = 216 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 73/187 (39%), Positives = 117/187 (62%), Gaps = 2/187 (1%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 M + + EPR+F + G+ +++++ P+++ + FR V++ LL + L LQI VER Sbjct: 9 MNEAEKISNLDEPRLFEEDGIEAQVAALVIPLLKPLGFRLVRVKLLGQNGLTLQIMVERA 68 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 DG+MT+ DCE +S+ +SP+LDV+N+IE Y LE+SSPGIDRP+VRKSDF W GH+ E Sbjct: 69 DGSMTVEDCETVSRTVSPLLDVQNVIERKYHLEISSPGIDRPLVRKSDFFHWQGHLAKIE 128 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 ++ ++K G + ++ GF L +K + ISF +++A L++TDEL+R Sbjct: 129 TKITIDGRRKFRGTLTNITQDGFILNTDKAAY--GEAMYTPISFCDIINAHLVLTDELIR 186 Query: 181 ASLNNYG 187 +L Sbjct: 187 DALKKNK 193 >gi|56694992|ref|YP_165338.1| hypothetical protein SPO0064 [Ruegeria pomeroyi DSS-3] gi|81350793|sp|Q5LWL1|RIMP_SILPO RecName: Full=Ribosome maturation factor rimP gi|56676729|gb|AAV93395.1| conserved hypothetical protein [Ruegeria pomeroyi DSS-3] Length = 208 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 54/178 (30%), Positives = 93/178 (52%), Gaps = 4/178 (2%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ ++ PVI ++ + V+I L+ K+ LQI ++ DG + + DC +S Sbjct: 5 LIAKAAIDRRLAEIVSPVIADLGYELVRIRLMSGKSTTLQIMADKPDGGIEVDDCAAISN 64 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S LDVE+ I Y LEVSSPGIDRP+ R DF + G+ E +++ G+ Sbjct: 65 AVSATLDVEDPILDAYTLEVSSPGIDRPLTRLKDFEMFEGYEAKIETTEMIDGRRRFRGE 124 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + G + ++ GE + I + FD L A+L++TD+L++ L + L Sbjct: 125 LAGIEGNEVLINLDQNGET----VTIGLEFDWLSDAKLVLTDDLIKEMLRQRKAAGVL 178 >gi|241207072|ref|YP_002978168.1| hypothetical protein Rleg_4390 [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860962|gb|ACS58629.1| protein of unknown function DUF150 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 201 Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats. Identities = 77/187 (41%), Positives = 122/187 (65%), Gaps = 2/187 (1%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 M ++ EPR+ + GL ++ +I+PV+ ++ FR +++ ++ + +Q+ ERD Sbjct: 1 MSDLTNADNEREPRLITETGLDQRLADIIEPVLVDLGFRLIRVRMMNQNGATMQVMAERD 60 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 DG MT++DCEE+S AISP+LDVE+ ++ Y LEVSSPGIDRPMVRKSDF+RW GH+V CE Sbjct: 61 DGTMTVQDCEEVSMAISPVLDVEDPVDKEYHLEVSSPGIDRPMVRKSDFVRWQGHLVKCE 120 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 + ++++ GKI+ GF LE+++ E ++ I F +L A+LI+TD+L+R Sbjct: 121 TSILIDNRKRFRGKIVEAGTDGFTLERDQIAY--GEEQKVTIPFTALSDAKLILTDDLIR 178 Query: 181 ASLNNYG 187 +L Sbjct: 179 DALRADK 185 >gi|116249894|ref|YP_765732.1| hypothetical protein RL0128 [Rhizobium leguminosarum bv. viciae 3841] gi|166977860|sp|Q1MN36|RIMP_RHIL3 RecName: Full=Ribosome maturation factor rimP gi|115254542|emb|CAK05616.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 201 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 76/187 (40%), Positives = 122/187 (65%), Gaps = 2/187 (1%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 M ++ EPR+ + GL ++ +I+PV+ ++ FR +++ ++ + +Q+ ER+ Sbjct: 1 MSDLTNADNEREPRLITETGLDQRLADIIEPVLVDLGFRLIRVRMMNQNGATMQVMAERN 60 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 DG MT++DCEE+S AISP+LDVE+ ++ Y LEVSSPGIDRPMVRKSDF+RW GH+V CE Sbjct: 61 DGTMTVQDCEEVSMAISPVLDVEDPVDKEYHLEVSSPGIDRPMVRKSDFVRWQGHLVKCE 120 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 + ++++ GKI+ GF LE+++ E ++ I F +L A+LI+TD+L+R Sbjct: 121 TSILIDNRKRFRGKIVEAGTDGFTLERDQIAY--GEEQKVTIPFTALSDAKLILTDDLIR 178 Query: 181 ASLNNYG 187 +L Sbjct: 179 DALRADK 185 >gi|259585702|sp|A8IG16|RIMP_AZOC5 RecName: Full=Ribosome maturation factor rimP Length = 291 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 66/189 (34%), Positives = 109/189 (57%), Gaps = 2/189 (1%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 M T EPR+ + G+A I++++ PV+ +++ R V++ + QI ER Sbjct: 1 MNETVEALDPNEPRLITESGVAARIAAIVTPVLADLNLRLVRVKVTARDGGTCQIMAERP 60 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 DG+MT+ DCE S+AISP+LDVE+ I G YRLE+SSPGIDRP+VR +DF RW GH V E Sbjct: 61 DGSMTIDDCEAASRAISPVLDVEDPITGAYRLEISSPGIDRPLVRLTDFDRWAGHEVKVE 120 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 + + +++ G ++GT +++ E ++++ + A+L++TD L+ Sbjct: 121 MAVPVDGRKRFRGILIGTRAELAVVKRTDA--PKGEEPEVSLPVADIGEAKLVLTDALIT 178 Query: 181 ASLNNYGSY 189 +L + Sbjct: 179 EALRRAKAA 187 >gi|39933516|ref|NP_945792.1| hypothetical protein RPA0439 [Rhodopseudomonas palustris CGA009] gi|51316646|sp|Q6NCN2|RIMP_RHOPA RecName: Full=Ribosome maturation factor rimP gi|39647362|emb|CAE25883.1| DUF150 [Rhodopseudomonas palustris CGA009] Length = 259 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 63/182 (34%), Positives = 105/182 (57%), Gaps = 2/182 (1%) Query: 8 HSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLR 67 EPR+ + G+A +V +PV+ M +R V+I + + +QI ER DG M + Sbjct: 12 DDLAEPRLVIEPGVAARFCAVAEPVLMAMGYRLVRIKVSGDAGCTVQIMAERPDGTMLID 71 Query: 68 DCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD 127 DCE +S+A+SP+LDV + I+ YRLE+SSPGIDRP+VR+SDF R+ GH+V E+ + Sbjct: 72 DCEAVSRALSPVLDVADPIDRAYRLEISSPGIDRPLVRRSDFARYAGHLVKIEMAVPHQG 131 Query: 128 KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYG 187 +++ G + G +++E + + + + + + ARL++TDEL+ S+ Sbjct: 132 RKRYRGLLDGVEGDAVRVQREGATKDE--DPLVLLPMHDIGDARLVLTDELIAESMRRGK 189 Query: 188 SY 189 Sbjct: 190 QA 191 >gi|150398624|ref|YP_001329091.1| hypothetical protein Smed_3438 [Sinorhizobium medicae WSM419] gi|166990840|sp|A6UF26|RIMP_SINMW RecName: Full=Ribosome maturation factor rimP gi|150030139|gb|ABR62256.1| protein of unknown function DUF150 [Sinorhizobium medicae WSM419] Length = 205 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 81/181 (44%), Positives = 119/181 (65%), Gaps = 2/181 (1%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 M T + EPR+ + GL ++ +I+PV+ ++ FR V++ + + L LQ+ ER+ Sbjct: 1 MSDTTTAENANEPRLITETGLDRRVADIIEPVLVDLGFRLVRVRMSGQNGLTLQVMTERN 60 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 DG MT+ DCEE+S+AISP+LDVE+ I+ Y LEVSSPGIDRPMVR+SDF+RW GH++ CE Sbjct: 61 DGTMTVEDCEEVSKAISPVLDVEDPIDKAYHLEVSSPGIDRPMVRRSDFIRWQGHLLKCE 120 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 + +++ GKI+ E GF LE+++ E + I F +L ARLI+TDEL+R Sbjct: 121 TSVLVEGRKRFRGKIVSVDEDGFRLERDQPAY--GEEAGVTIPFTALSEARLILTDELIR 178 Query: 181 A 181 Sbjct: 179 D 179 >gi|260431716|ref|ZP_05785687.1| hypothetical protein SL1157_0822 [Silicibacter lacuscaerulensis ITI-1157] gi|260415544|gb|EEX08803.1| hypothetical protein SL1157_0822 [Silicibacter lacuscaerulensis ITI-1157] Length = 196 Score = 211 bits (539), Expect = 3e-53, Method: Composition-based stats. Identities = 56/178 (31%), Positives = 90/178 (50%), Gaps = 4/178 (2%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ +I PVIE++ + V+I L+ K LQI ++ DG + + DC E+S Sbjct: 5 LIAKAAIDRRLAEIITPVIEDLGYELVRIRLMSGKQTTLQIMADKPDGGIEVDDCAEISN 64 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S LDVE+ I Y LEVSSPGIDRP+ R DF + G+ E +++ G+ Sbjct: 65 AVSATLDVEDPILDAYTLEVSSPGIDRPLTRLKDFEMFEGYEAKLETTELIDGRRRFKGE 124 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + G + E + I + FD L A+L++TD+L++ L L Sbjct: 125 LAGVEGDEVLINIPNGDET----VTIGLQFDWLSDAKLVLTDDLIKEMLRQRKDAGAL 178 >gi|254475663|ref|ZP_05089049.1| hypothetical protein RR11_1501 [Ruegeria sp. R11] gi|214029906|gb|EEB70741.1| hypothetical protein RR11_1501 [Ruegeria sp. R11] Length = 196 Score = 211 bits (539), Expect = 3e-53, Method: Composition-based stats. Identities = 60/178 (33%), Positives = 95/178 (53%), Gaps = 4/178 (2%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ +I PVIE++ F V+I L+ K LQI ++ DG + + DC E+S Sbjct: 5 LIAKAAIDRRLAEIITPVIEDLGFELVRIRLMSGKTTTLQIMADKPDGGIEVDDCAEISN 64 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S LDVE+ I Y LEVSSPGIDRP+ R DF + G+ E +++ G+ Sbjct: 65 AVSATLDVEDPILDAYALEVSSPGIDRPLTRLKDFDMFEGYEAKIETTELIDGRRRFKGE 124 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + G E + E+ GE + I + FD L A+L++TD+L++ L + L Sbjct: 125 LAGVEEDEVLINIEEHGET----VTIGLKFDWLSDAKLVLTDDLIKEMLRQRKAAGTL 178 >gi|92115661|ref|YP_575390.1| hypothetical protein Nham_0028 [Nitrobacter hamburgensis X14] gi|122418985|sp|Q1QS67|RIMP_NITHX RecName: Full=Ribosome maturation factor rimP gi|91798555|gb|ABE60930.1| protein of unknown function DUF150 [Nitrobacter hamburgensis X14] Length = 263 Score = 211 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 67/177 (37%), Positives = 113/177 (63%), Gaps = 2/177 (1%) Query: 11 YEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCE 70 EPR+ + G+A +SSV+ PV++ M +R V+I + E +QI ER DG+M + DCE Sbjct: 15 DEPRLVVEPGVAARVSSVVAPVLQGMGYRLVRIKVSGEYGCTVQIMAERPDGSMQIEDCE 74 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 +S+A+SP+LDV + I+ YRLE+SSPGIDRP+VR+SDF R GH+V E+ ++ +++ Sbjct: 75 AISKALSPVLDVADPIDKAYRLEISSPGIDRPLVRRSDFERHAGHLVKVEMAVAHQGRKR 134 Query: 131 LIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYG 187 G + G + L ++ ++++E ++ + + + ARL++TDEL+ S+ Sbjct: 135 FRGILQGVKDNAIRLHRDD--VQNVDESEVLLVMEDIADARLVLTDELIAESMRRGK 189 >gi|254465218|ref|ZP_05078629.1| hypothetical protein RBY4I_1824 [Rhodobacterales bacterium Y4I] gi|206686126|gb|EDZ46608.1| hypothetical protein RBY4I_1824 [Rhodobacterales bacterium Y4I] Length = 196 Score = 211 bits (538), Expect = 4e-53, Method: Composition-based stats. Identities = 56/178 (31%), Positives = 97/178 (54%), Gaps = 4/178 (2%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ ++ PVIE++ + V+I L+ K+ LQI ++ +G + + DC E+S Sbjct: 5 LIAKAAIDRRLAEIVTPVIEDLGYELVRIRLMSGKSTTLQIMADKPNGGIEVDDCAEISN 64 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S LDVE+ I Y LEVSSPGIDRP+ R DF + G+ E + G +++ G+ Sbjct: 65 AVSAALDVEDPIIDAYALEVSSPGIDRPLTRMKDFEMFEGYEAKLETAETVGGRRRFKGE 124 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + GT + E +G+ + + + FD L A+L++TD+L++ L L Sbjct: 125 LAGTEGDEVLINIEDQGQT----VTVGLKFDWLSDAKLVLTDDLIKEMLRQRKEAGTL 178 >gi|170740832|ref|YP_001769487.1| hypothetical protein M446_2614 [Methylobacterium sp. 4-46] gi|259585789|sp|B0UL53|RIMP_METS4 RecName: Full=Ribosome maturation factor rimP gi|168195106|gb|ACA17053.1| protein of unknown function DUF150 [Methylobacterium sp. 4-46] Length = 201 Score = 211 bits (538), Expect = 4e-53, Method: Composition-based stats. Identities = 61/183 (33%), Positives = 101/183 (55%), Gaps = 2/183 (1%) Query: 8 HSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLR 67 H E R+ + G+A ++ +++P +E + FR V++ + + +QI ER DG MT+ Sbjct: 7 HHATEKRLITETGVAARVAQIVEPSLEGLGFRLVRVRVTGQNGCTVQIMAERPDGTMTVE 66 Query: 68 DCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD 127 DCE +S+ ISP+LDV++ I Y LE+SSPGIDRP+VR DF RW GH E+ + Sbjct: 67 DCEAVSRTISPLLDVDDPIGRAYHLEISSPGIDRPLVRAGDFARWAGHEAKVELAVPLEG 126 Query: 128 KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYG 187 +++ G I ++ E ++ ++ + A L++TD+L+R SL Sbjct: 127 RKRFRGLIRAPEGATVRIDLPDAKEGTPASYELRLA--DIGEAHLVLTDDLIRESLRRGS 184 Query: 188 SYA 190 + A Sbjct: 185 APA 187 >gi|259585712|sp|B9JGT7|RIMP_AGRRK RecName: Full=Ribosome maturation factor rimP Length = 198 Score = 211 bits (537), Expect = 5e-53, Method: Composition-based stats. Identities = 79/185 (42%), Positives = 122/185 (65%), Gaps = 2/185 (1%) Query: 7 LHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTL 66 + EPR+ + GL I+++I+PVI M +R V++ L+ + L LQ+ ER+DG+M + Sbjct: 4 ADNINEPRLIVETGLDQRIAAIIEPVIVGMDYRLVRVRLMNQNGLTLQVMAERNDGSMNV 63 Query: 67 RDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 + CEE+S AISP+LDVE+ ++ Y LEVSSPGIDRPMVRKSDF+RWNGH+V CE + Sbjct: 64 QGCEEISTAISPVLDVEDPVDKAYHLEVSSPGIDRPMVRKSDFVRWNGHIVKCETSILVD 123 Query: 127 DKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNY 186 ++++ GKI ++ GF +E+++ E ++ I F +L A+LI+TD+L+R +L Sbjct: 124 NRKRFRGKITDVNDDGFTIERDQVAY--GEEPKVTIPFSTLAEAKLILTDDLIRDALRAD 181 Query: 187 GSYAG 191 Sbjct: 182 KQAKA 186 >gi|254502830|ref|ZP_05114981.1| conserved hypothetical protein [Labrenzia alexandrii DFL-11] gi|222438901|gb|EEE45580.1| conserved hypothetical protein [Labrenzia alexandrii DFL-11] Length = 198 Score = 211 bits (537), Expect = 5e-53, Method: Composition-based stats. Identities = 66/181 (36%), Positives = 105/181 (58%), Gaps = 2/181 (1%) Query: 9 SKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRD 68 S EPRI + GL ++++I+PVIE++ +R V+ + LQI ER DG MT+ D Sbjct: 2 SDQEPRIVTEQGLDARVAAIIEPVIEDLGYRLVRTRISAANGCTLQIMAERPDGTMTVDD 61 Query: 69 CEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 CE +S+A+SP LDVE+ I Y LEVSSPGIDRP+VR DF RW GH + E+ + + Sbjct: 62 CETISRAVSPALDVEDPINRAYHLEVSSPGIDRPLVRAGDFDRWAGHEMKVEMDVMQDGR 121 Query: 129 QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGS 188 ++ G ++G + E + + + + + + A+L++TD+L+ A+L + Sbjct: 122 KRFRGTLLGVEGVSAKMRLPDAPEGEAD--TVLLPMEDIGEAKLVLTDDLITAALQAEKA 179 Query: 189 Y 189 Sbjct: 180 A 180 >gi|259585810|sp|B8IEB0|RIMP_METNO RecName: Full=Ribosome maturation factor rimP Length = 203 Score = 211 bits (537), Expect = 6e-53, Method: Composition-based stats. Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 2/187 (1%) Query: 3 STHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDG 62 H E R+ + G+A ++ +++P +E + FR V++ + + +QI ER DG Sbjct: 5 PDHHPADAAEKRLITETGVAARVAQIVEPSLEGLGFRLVRVRVTGQNGCTVQIMAERPDG 64 Query: 63 NMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV 122 MT+ DCE +S+ ISP+LDV++ I Y LE+SSPGIDRP+VR DF RW GH E+ Sbjct: 65 TMTVEDCESVSRTISPLLDVDDPIGRAYHLEISSPGIDRPLVRVGDFARWAGHEAKVELT 124 Query: 123 LSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS 182 + +++ G I ++ E + + + A L++TD L+R S Sbjct: 125 VPLEGRKRFRGIIRAPEGESVRIDLPDAKEGTPASYDLRLR--DIGEAHLVLTDALIRES 182 Query: 183 LNNYGSY 189 L + Sbjct: 183 LRRGSAP 189 >gi|15887444|ref|NP_353125.1| hypothetical protein Atu0090 [Agrobacterium tumefaciens str. C58] gi|34222929|sp|Q8UJ48|RIMP_AGRT5 RecName: Full=Ribosome maturation factor rimP gi|15154957|gb|AAK85910.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 198 Score = 211 bits (537), Expect = 6e-53, Method: Composition-based stats. Identities = 72/178 (40%), Positives = 113/178 (63%), Gaps = 2/178 (1%) Query: 7 LHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTL 66 + EPR+ + G+ I+ +I+PV+ M + V++ L + + LQ+ ER+DG M + Sbjct: 2 ADTAQEPRLITETGIDQRIAEIIEPVLTGMGYLLVRVRLSNQNGMTLQVMAEREDGTMNV 61 Query: 67 RDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 +DCE +S AISP+LDVE+ +E Y LEVSSPGIDRPMVRK+DF RW GH+V E + Sbjct: 62 QDCEAISMAISPVLDVEDPVEKAYHLEVSSPGIDRPMVRKTDFTRWQGHLVKVETSILVE 121 Query: 127 DKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLN 184 ++++ GKI+ F LE+++ E + + F++L A+LI+TD+L+R +L Sbjct: 122 NRKRFRGKIVEVDADSFKLERDQIAY--GEEPTVVVPFNALSDAKLILTDDLIRDALR 177 >gi|192288874|ref|YP_001989479.1| hypothetical protein Rpal_0443 [Rhodopseudomonas palustris TIE-1] gi|226706186|sp|B3QAB7|RIMP_RHOPT RecName: Full=Ribosome maturation factor rimP gi|192282623|gb|ACE99003.1| protein of unknown function DUF150 [Rhodopseudomonas palustris TIE-1] Length = 259 Score = 211 bits (537), Expect = 6e-53, Method: Composition-based stats. Identities = 63/182 (34%), Positives = 104/182 (57%), Gaps = 2/182 (1%) Query: 8 HSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLR 67 EPR+ + G+A +V +PV+ M +R V+I + + +QI ER DG M + Sbjct: 12 DDLAEPRLVIEPGVAARFCAVAEPVLMAMGYRLVRIKVSGDAGCTVQIMAERPDGTMLID 71 Query: 68 DCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD 127 DCE S+A+SP+LDV + I+ YRLE+SSPGIDRP+VR+SDF R+ GH+V E+ + Sbjct: 72 DCEAASRALSPVLDVADPIDRAYRLEISSPGIDRPLVRRSDFARYAGHLVKIEMAVPHQG 131 Query: 128 KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYG 187 +++ G + G +++E + + + + + + ARL++TDEL+ S+ Sbjct: 132 RKRYRGLLDGVEGDAVRVQREGATKDE--DPLVLLPMHDIGDARLVLTDELIAESMRRGK 189 Query: 188 SY 189 Sbjct: 190 QA 191 >gi|319405102|emb|CBI78706.1| conserved hypothetical protein [Bartonella sp. AR 15-3] Length = 207 Score = 210 bits (536), Expect = 6e-53, Method: Composition-based stats. Identities = 82/191 (42%), Positives = 117/191 (61%), Gaps = 2/191 (1%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 M + + EPR+F + G+A +S++I P+++ + F + LL L LQI VER Sbjct: 18 MNAIERMDDINEPRLFEEDGVAARVSALIIPLLKPLGFHLICTKLLSLNGLTLQIMVERT 77 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 +G MT++DCE +S+ ++P+LD+ENIIE Y LEVSSPGIDRP+VRKSDF W GH+ E Sbjct: 78 NGTMTIKDCEIVSRTVAPLLDIENIIERKYHLEVSSPGIDRPLVRKSDFFHWQGHLAKIE 137 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 +QK GK+ +++GF L EK D E I I F ++ +ARLI+TDEL+R Sbjct: 138 TSTIIDGRQKFRGKLTDITQSGFTLNIEKTA--DREEANIFIPFSNITNARLILTDELIR 195 Query: 181 ASLNNYGSYAG 191 +L A Sbjct: 196 DTLKKNKDCAN 206 >gi|227824068|ref|YP_002828041.1| hypothetical protein NGR_c35650 [Sinorhizobium fredii NGR234] gi|254765072|sp|C3MC63|RIMP_RHISN RecName: Full=Ribosome maturation factor rimP gi|227343070|gb|ACP27288.1| conserved hypothetical protein [Sinorhizobium fredii NGR234] Length = 205 Score = 210 bits (536), Expect = 7e-53, Method: Composition-based stats. Identities = 82/181 (45%), Positives = 118/181 (65%), Gaps = 2/181 (1%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 M EPR+ + GL I+ +I+PV+ +M FR V++ + + L LQI ER+ Sbjct: 1 MSDPTTAEIANEPRLITETGLDRRIADIIEPVLVQMGFRLVRVRMSGQNGLTLQIMTERN 60 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 DG MT+ DCE++S+A+SP+LDVE+ I+ Y LEVSSPGIDRPMVRKSDF+RW GH++ CE Sbjct: 61 DGTMTVEDCEDVSKAVSPVLDVEDPIDKAYHLEVSSPGIDRPMVRKSDFVRWQGHLMKCE 120 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 + +++ GKI+ E GF LE+++ E +AI F +L ARLI+TD+L+R Sbjct: 121 TSIMVDGRKRFRGKIVSVDEEGFRLERDQPAY--GEEAVVAIPFTALSDARLILTDDLIR 178 Query: 181 A 181 Sbjct: 179 D 179 >gi|319898340|ref|YP_004158433.1| hypothetical protein BARCL_0162 [Bartonella clarridgeiae 73] gi|319402304|emb|CBI75843.1| conserved protein of unknown function [Bartonella clarridgeiae 73] Length = 207 Score = 210 bits (536), Expect = 7e-53, Method: Composition-based stats. Identities = 77/178 (43%), Positives = 115/178 (64%), Gaps = 2/178 (1%) Query: 9 SKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRD 68 EPR+F + G+A ++++I P+++ + FR V+I LL L LQI ER +G MT+ D Sbjct: 29 DIDEPRLFEEDGIAARVAALIAPLLKPLGFRLVRIKLLGLNGLTLQIMAERANGTMTIED 88 Query: 69 CEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 CE +S+ ++P+LD+ENIIE Y LE+SSPGIDRP+VRKSDF W GH+ E + + Sbjct: 89 CETVSRTVAPLLDIENIIERKYHLEISSPGIDRPLVRKSDFFHWQGHLAKIETSTAINGR 148 Query: 129 QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNY 186 QK GK++ ++ GF L +K D E+ ISF ++ +A L++TDEL+R +L Sbjct: 149 QKFRGKLINVAQNGFTLNIDKTA--DGEEMHEFISFSNITNAHLVLTDELIRDTLKKN 204 >gi|27375897|ref|NP_767426.1| hypothetical protein bll0786 [Bradyrhizobium japonicum USDA 110] gi|34222841|sp|Q89WA6|RIMP_BRAJA RecName: Full=Ribosome maturation factor rimP gi|27349035|dbj|BAC46051.1| bll0786 [Bradyrhizobium japonicum USDA 110] Length = 251 Score = 210 bits (536), Expect = 7e-53, Method: Composition-based stats. Identities = 68/179 (37%), Positives = 111/179 (62%), Gaps = 2/179 (1%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 EPR+ + G+A +S+V PV++ M +R V+I + E +QI ER DG+M + DCE Sbjct: 16 EPRLVVEPGVAARVSAVAGPVLQGMGYRLVRIRISGEAGCTVQIMAERPDGSMQIEDCEA 75 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+A+SP+LDV + I+ YRLE+SSPGIDRP+VR+SDF R+ GH+V E+ ++ +++ Sbjct: 76 ISRALSPVLDVADPIDRAYRLEISSPGIDRPLVRRSDFERYAGHLVKVEMAVAHEGRKRF 135 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 G I L+++ K E + ++ + + ARL++TDEL+ S+ + A Sbjct: 136 RGMIGAVEGDRVHLQRDD--VKAGEERNVLLTMEDISEARLVLTDELIAESMRRGKAAA 192 >gi|163867514|ref|YP_001608713.1| hypothetical protein Btr_0242 [Bartonella tribocorum CIP 105476] gi|259585727|sp|A9IMU4|RIMP_BART1 RecName: Full=Ribosome maturation factor rimP gi|161017160|emb|CAK00718.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476] Length = 208 Score = 210 bits (535), Expect = 9e-53, Method: Composition-based stats. Identities = 73/188 (38%), Positives = 117/188 (62%), Gaps = 2/188 (1%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 M + + EPR+F + G+ +++++ P+++ + FR V++ LL + L LQI VER Sbjct: 1 MNEAEKISNLDEPRLFEEDGIEARVAALVIPLLKPLGFRLVRVKLLGQNGLTLQIMVERA 60 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 DG++T+ DCE +S+ +SP+LDVEN+IE Y LE+SSPGIDRP+VRKSDF W GH+ E Sbjct: 61 DGSLTVEDCETVSRTVSPLLDVENVIERKYHLEISSPGIDRPLVRKSDFFHWQGHLAKIE 120 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 ++ ++K G + ++ GF L +K + +ISF ++ A L++TDEL+R Sbjct: 121 TKITIDGRRKFRGTLTNITQDGFILNADKAAY--GEAMYTSISFCDIIGAHLVLTDELIR 178 Query: 181 ASLNNYGS 188 +L Sbjct: 179 DALKKNKD 186 >gi|99082749|ref|YP_614903.1| hypothetical protein TM1040_2909 [Ruegeria sp. TM1040] gi|122397499|sp|Q1GCH5|RIMP_SILST RecName: Full=Ribosome maturation factor rimP gi|99039029|gb|ABF65641.1| protein of unknown function DUF150 [Ruegeria sp. TM1040] Length = 203 Score = 210 bits (535), Expect = 9e-53, Method: Composition-based stats. Identities = 58/178 (32%), Positives = 94/178 (52%), Gaps = 4/178 (2%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ +I PVIE++ + V+I L+ K LQI +R DG + + DC +S Sbjct: 5 LIAKAAIDRRLAEIITPVIEDLGYELVRIRLMSGKTTTLQIMADRPDGGIEVDDCAAISN 64 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S LDVE+ I Y LEVSSPGIDRP+ R DF + G+ E +++ G+ Sbjct: 65 AVSATLDVEDPILDAYTLEVSSPGIDRPLTRLKDFDMFEGYEAKLETADLIDGRRRFKGE 124 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + G + + E+ GE + I + FD L A+L++TD+L++ L + L Sbjct: 125 LAGIEDDEVLINIEEHGET----VTIGLKFDWLSDAKLVLTDDLIKEMLRQRKAAGVL 178 >gi|85714178|ref|ZP_01045167.1| hypothetical protein NB311A_08478 [Nitrobacter sp. Nb-311A] gi|85699304|gb|EAQ37172.1| hypothetical protein NB311A_08478 [Nitrobacter sp. Nb-311A] Length = 259 Score = 209 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 63/177 (35%), Positives = 108/177 (61%), Gaps = 2/177 (1%) Query: 11 YEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCE 70 EPR+ + G+A ++++ PV++ M +R V+I + E LQI ER DG+M + DCE Sbjct: 15 DEPRLVLEPGVAARVATIAAPVLQGMGYRLVRIKVSGEAGCTLQIMAERPDGSMQIEDCE 74 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 +S+ +SP+LDV + I+ YRLE+SSPGIDRP+VR+SDF R+ GH+ E+ ++ +++ Sbjct: 75 TISKMLSPVLDVADPIDRAYRLEISSPGIDRPLVRRSDFERYAGHLAKVEMAVAHQGRKR 134 Query: 131 LIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYG 187 G + G + L ++ + N+ + + + + ARL++TDEL+ S+ Sbjct: 135 FRGILRGVEDNAVRLHRDD--VQQDNDADVLLIMEDIADARLVLTDELIAESMRRGK 189 >gi|299133376|ref|ZP_07026571.1| protein of unknown function DUF150 [Afipia sp. 1NLS2] gi|298593513|gb|EFI53713.1| protein of unknown function DUF150 [Afipia sp. 1NLS2] Length = 264 Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats. Identities = 61/179 (34%), Positives = 106/179 (59%), Gaps = 1/179 (0%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 E R+ + G+A ++++ +PV+E + ++ V+I + E +QI ER DG M + DCE Sbjct: 21 ERRLVVEPGVAARVAAIAEPVLEGLGYQLVRIKISGEAGCTVQIMAERPDGTMLIDDCEA 80 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+A+SP++DV + I+ YRLE+SSPGIDRP+VR+SDF R+ GH+V E+ + +++ Sbjct: 81 ISKALSPVMDVADPIQRAYRLEISSPGIDRPLVRQSDFERYTGHLVKIEMSVPHDGRKRF 140 Query: 132 IGKIMGTSETGFFLEKEKRGE-KDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSY 189 G + G + ++ E K E + + + SA L++T+EL+ S+ Sbjct: 141 RGTLEGIENGLVRITRDDVKEHKGAQEADVQLPLADIASANLVLTNELIAESMRRGRDA 199 >gi|110677787|ref|YP_680794.1| hypothetical protein RD1_0389 [Roseobacter denitrificans OCh 114] gi|123065971|sp|Q16D35|RIMP_ROSDO RecName: Full=Ribosome maturation factor rimP gi|109453903|gb|ABG30108.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114] Length = 196 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 60/178 (33%), Positives = 95/178 (53%), Gaps = 8/178 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ +I PVIE+M F V++ L+ K+ +LQI +R DG + + DC E+SQ Sbjct: 5 LIAKAAIDRRMAEIITPVIEDMGFELVRVRLMSGKSTILQIMADRPDGGIEVDDCAEISQ 64 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S +LDVE+ I Y LEVSSPGIDRP+ R DF + G+ E +++ G Sbjct: 65 AVSAVLDVEDPILDEYTLEVSSPGIDRPLTRLKDFEMFEGYEAKIETGDMVDGRRRFKGA 124 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + G + + E E I + FD L A+L++TD+L++ L + L Sbjct: 125 LAGVEDDEVLINIE--------EGTIGLKFDWLSDAKLVLTDDLIKEMLRQRKAAGAL 174 >gi|163757747|ref|ZP_02164836.1| hypothetical protein HPDFL43_20092 [Hoeflea phototrophica DFL-43] gi|162285249|gb|EDQ35531.1| hypothetical protein HPDFL43_20092 [Hoeflea phototrophica DFL-43] Length = 205 Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 77/181 (42%), Positives = 114/181 (62%), Gaps = 2/181 (1%) Query: 4 THFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN 63 T S YEPR+ + G+ I+ +++PV+ + R V++ L + L LQI ER DG Sbjct: 2 TDNAASAYEPRLVTETGVDARIAEIVEPVLASIDMRLVRVRLSGQNGLTLQIMAERTDGT 61 Query: 64 MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVL 123 MT+ DCE S+A+SP+LDVE+ +E Y LE+SSPGIDRP+VRKSDF RW GH+ C+ + Sbjct: 62 MTVEDCEAASRALSPVLDVEDPVEKAYHLEISSPGIDRPLVRKSDFERWQGHLARCDASV 121 Query: 124 SSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 +++ G I S+TGF +E+++ E + I F +L A+L++TDEL+R SL Sbjct: 122 LINGRKRFRGFIRDVSDTGFIVERDQPVY--GEENRAEIPFSALAEAKLVLTDELIRESL 179 Query: 184 N 184 Sbjct: 180 R 180 >gi|319406548|emb|CBI80190.1| conserved hypothetical protein [Bartonella sp. 1-1C] Length = 225 Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 83/188 (44%), Positives = 120/188 (63%), Gaps = 2/188 (1%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 M + EPR+F + G+A +S++I P+++ + FR V+ LL L LQI VER Sbjct: 18 MNEIERMDDIDEPRLFEEDGVAARVSALIIPLLKPLGFRLVRTKLLGLNGLTLQIMVERT 77 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 +G MT+ DCE +S+A++P+LDVENIIE Y LEVSSPGIDRP+VRKSDF+ W GH+ E Sbjct: 78 NGTMTIEDCEIVSRAVAPLLDVENIIERKYHLEVSSPGIDRPLVRKSDFIHWQGHLAKIE 137 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 +QKL GK+ ++ GF L EK ++ ++ + ISF ++ +A LI+TDEL+R Sbjct: 138 TSTIIDGRQKLRGKLKDITQNGFTLNIEKTAHRE--KVNVFISFSNITNAHLILTDELIR 195 Query: 181 ASLNNYGS 188 +L Sbjct: 196 DTLKKNKD 203 >gi|209551641|ref|YP_002283558.1| hypothetical protein Rleg2_4070 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|226706118|sp|B5ZW32|RIMP_RHILW RecName: Full=Ribosome maturation factor rimP gi|209537397|gb|ACI57332.1| protein of unknown function DUF150 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 201 Score = 208 bits (531), Expect = 3e-52, Method: Composition-based stats. Identities = 77/187 (41%), Positives = 122/187 (65%), Gaps = 2/187 (1%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 M ++ EPR+ + GL ++ +I+PV+ + FR +++ +L + + +Q+ ER+ Sbjct: 1 MSDMTNAGNELEPRLITETGLDQRLADIIEPVLIGIGFRLIRVRMLNQNGVTMQVMAERN 60 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 DG MT++DCEE+S AISP+LDVE+ ++ Y LEVSSPGIDRPMVRKSDF+RW GH+V CE Sbjct: 61 DGTMTVQDCEEVSMAISPVLDVEDPVDKEYHLEVSSPGIDRPMVRKSDFVRWQGHLVKCE 120 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 + ++++ GKI+ GF LE+++ E ++ I F +L A+LI+TD+L+R Sbjct: 121 TSILIDNRKRFRGKIVEAGVDGFTLERDQVAY--GEEQKVTIPFTALSDAKLILTDDLIR 178 Query: 181 ASLNNYG 187 +L Sbjct: 179 DALRADK 185 >gi|319408014|emb|CBI81668.1| conserved hypothetical protein [Bartonella schoenbuchensis R1] Length = 211 Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats. Identities = 72/187 (38%), Positives = 116/187 (62%), Gaps = 2/187 (1%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 + T +++ EPR+F + G+ G +++++ P+++ +S+R +++ L LQI ER Sbjct: 4 INETETINNIDEPRLFKEDGIEGRVAALVSPLLKPLSYRLIRVKFSGLNGLTLQIMAERT 63 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 DG MT+ DCE +S+ +SP LDV+NIIE Y LE+SSPGIDRP+VRKSDF +W GHV E Sbjct: 64 DGTMTIEDCEIISRTVSPFLDVQNIIERKYHLEISSPGIDRPLVRKSDFFKWQGHVAKIE 123 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 + +QK G + ++ F L +K ++ + + I F + +ARL++TDEL+R Sbjct: 124 TGVVINGRQKFRGTLTNITQNSFTLNTDKASHGEIAD--VLIPFADVTNARLVLTDELIR 181 Query: 181 ASLNNYG 187 +L Sbjct: 182 DALKKDK 188 >gi|86136806|ref|ZP_01055384.1| hypothetical protein MED193_14067 [Roseobacter sp. MED193] gi|85826130|gb|EAQ46327.1| hypothetical protein MED193_14067 [Roseobacter sp. MED193] Length = 196 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 57/178 (32%), Positives = 95/178 (53%), Gaps = 4/178 (2%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ ++ PVIE++ + V+I L+ K LQI ++ +G + + DC +S Sbjct: 5 LIAKAAIDRRLAEILIPVIEDLGYELVRIRLMSGKTTTLQIMADKPEGGIEVDDCAVVSS 64 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S LDVE+ I Y LEVSSPGIDRP+ R DF + G+ E G +++ G+ Sbjct: 65 AVSATLDVEDPILDAYTLEVSSPGIDRPLTRLKDFDMFEGYEAKLETDELVGGRRRFKGE 124 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + GT E + E +G+ + I + FD L A+L++TD+L+ L + L Sbjct: 125 LAGTEEDEVLINIEDQGKT----VTIGLKFDWLSDAKLVLTDDLITEMLRQRKAAGTL 178 >gi|163852119|ref|YP_001640162.1| hypothetical protein Mext_2700 [Methylobacterium extorquens PA1] gi|218530877|ref|YP_002421693.1| hypothetical protein Mchl_2926 [Methylobacterium chloromethanicum CM4] gi|259585785|sp|B7KQK1|RIMP_METC4 RecName: Full=Ribosome maturation factor rimP gi|259585786|sp|A9W685|RIMP_METEP RecName: Full=Ribosome maturation factor rimP gi|163663724|gb|ABY31091.1| protein of unknown function DUF150 [Methylobacterium extorquens PA1] gi|218523180|gb|ACK83765.1| protein of unknown function DUF150 [Methylobacterium chloromethanicum CM4] Length = 251 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 64/184 (34%), Positives = 100/184 (54%) Query: 7 LHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTL 66 + E R+ + G+A ++ +++ IE + FR V++ + +QI ER DG M + Sbjct: 1 MAEPTEKRLVSETGVAARVAQIVEGPIEGLGFRLVRVKISNTNGRTVQIMAERPDGTMGV 60 Query: 67 RDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 +CE +S+AISPILD+E+ + Y LEVSSPGIDRP+VR SDF RW G+ E+ + Sbjct: 61 DECEAVSRAISPILDLEDPVGDAYYLEVSSPGIDRPLVRVSDFERWAGYEAKVELAVPMD 120 Query: 127 DKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNY 186 +++ G I S G + + K +I + L A L++TDEL+R SL Sbjct: 121 GRKRFRGIIGVPSADGTTVPIDLPDVKPGLPSRIDVPLRDLGEAHLVLTDELIRESLRRG 180 Query: 187 GSYA 190 + Sbjct: 181 SAPP 184 >gi|254561863|ref|YP_003068958.1| hypothetical protein METDI3462 [Methylobacterium extorquens DM4] gi|254269141|emb|CAX25105.1| conserved hypothetical protein, UPF0090 protein [Methylobacterium extorquens DM4] Length = 251 Score = 207 bits (529), Expect = 4e-52, Method: Composition-based stats. Identities = 64/184 (34%), Positives = 100/184 (54%) Query: 7 LHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTL 66 + E R+ + G+A ++ +++ IE + FR V++ + +QI ER DG M + Sbjct: 1 MAEPTEKRLVSETGVAARVAQIVEGPIEGLGFRLVRVKISNTNGRTVQIMAERPDGTMGV 60 Query: 67 RDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 +CE +S+AISPILD+E+ + Y LEVSSPGIDRP+VR SDF RW G+ E+ + Sbjct: 61 DECEAVSRAISPILDLEDPVGDAYYLEVSSPGIDRPLVRVSDFERWAGYEAKVELAVPMD 120 Query: 127 DKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNY 186 +++ G I S G + + K +I + L A L++TDEL+R SL Sbjct: 121 GRKRFRGIIGVPSADGTTVPIDLPDVKPGLPSRIDVPLRDLGEAHLVLTDELIRESLRRG 180 Query: 187 GSYA 190 + Sbjct: 181 SAPP 184 >gi|149912924|ref|ZP_01901458.1| hypothetical protein RAZWK3B_03010 [Roseobacter sp. AzwK-3b] gi|149813330|gb|EDM73156.1| hypothetical protein RAZWK3B_03010 [Roseobacter sp. AzwK-3b] Length = 190 Score = 207 bits (528), Expect = 5e-52, Method: Composition-based stats. Identities = 58/178 (32%), Positives = 93/178 (52%), Gaps = 8/178 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ +I PVIE+M F V++ L+ K LLQI ER +G + + DC ++S Sbjct: 5 LIAKAAIDRRLAEIITPVIEDMGFELVRVRLMGGKTHLLQIMAERPEGGIEVDDCAKISN 64 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S +LDVE+ + Y LEVSSPGIDRP+ R DF + G+ E +++ G Sbjct: 65 AVSAVLDVEDPVTDPYTLEVSSPGIDRPLTRLKDFADFEGYEAKIETSELIDGRKRFKGV 124 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + G + + E E + + FD L A+L++TDEL++ L + L Sbjct: 125 LAGVEDDEVLINIE--------EGTVGLKFDWLSDAKLVLTDELIKEMLKARKAAGTL 174 >gi|328545920|ref|YP_004306029.1| ribosome maturation factor rimP [polymorphum gilvum SL003B-26A1] gi|326415660|gb|ADZ72723.1| Ribosome maturation factor rimP [Polymorphum gilvum SL003B-26A1] Length = 205 Score = 207 bits (527), Expect = 8e-52, Method: Composition-based stats. Identities = 67/180 (37%), Positives = 109/180 (60%), Gaps = 2/180 (1%) Query: 9 SKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRD 68 S +E RI + GL ++++++PVIE++ +R V++ + LQI ER DG MT+ D Sbjct: 2 SLHEARIVIEQGLEARVAAIVEPVIEDLGYRLVRVKISAANGCTLQIMAERPDGTMTVED 61 Query: 69 CEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 CEE+S+A+SP LDV++ I Y LE+SSPGIDRP+VR DF RW+GHV E+ + + Sbjct: 62 CEEVSRAVSPALDVDDPINRAYHLEISSPGIDRPLVRVGDFDRWSGHVAKVEMSVMQDGR 121 Query: 129 QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGS 188 ++ G ++G + L + +E + + + ARL++TD+L+RA+L + Sbjct: 122 KRFRGILLGAGDGTVRLRLTDTPKDVADE--VRLPLAEIAEARLVLTDDLIRAALQAEKA 179 >gi|240139448|ref|YP_002963923.1| hypothetical protein MexAM1_META1p2893 [Methylobacterium extorquens AM1] gi|240009420|gb|ACS40646.1| conserved hypothetical protein, UPF0090 protein [Methylobacterium extorquens AM1] Length = 251 Score = 207 bits (527), Expect = 8e-52, Method: Composition-based stats. Identities = 64/184 (34%), Positives = 100/184 (54%) Query: 7 LHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTL 66 + E R+ + G+A ++ +++ IE + FR V++ + +QI ER DG M + Sbjct: 1 MAEPTEKRLVSETGVAARVAQIVEGPIEGLGFRLVRVKISNTNGRTVQIMAERPDGTMGV 60 Query: 67 RDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 +CE +S+AISPILD+E+ + Y LEVSSPGIDRP+VR SDF RW G+ E+ + Sbjct: 61 DECEAVSRAISPILDLEDPVGDAYYLEVSSPGIDRPLVRVSDFERWAGYEAKVELAVPMD 120 Query: 127 DKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNY 186 +++ G I S G + + K +I + L A L++TDEL+R SL Sbjct: 121 GRKRFRGIIGVPSADGTTVPIDLPDVKPGLLSRIDVPLRDLGEAHLVLTDELIRESLRRG 180 Query: 187 GSYA 190 + Sbjct: 181 SAPP 184 >gi|163742657|ref|ZP_02150043.1| hypothetical protein RG210_07209 [Phaeobacter gallaeciensis 2.10] gi|161384242|gb|EDQ08625.1| hypothetical protein RG210_07209 [Phaeobacter gallaeciensis 2.10] Length = 196 Score = 206 bits (526), Expect = 9e-52, Method: Composition-based stats. Identities = 58/178 (32%), Positives = 94/178 (52%), Gaps = 4/178 (2%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ +I PVIE++ F V+I L+ K LQI ++ DG + + C E+S Sbjct: 5 LIAKAAIDRRLAEIITPVIEDLGFELVRIRLMSGKTTTLQIMADKPDGGIEVDGCAEISN 64 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S LDVE+ I Y LEVSSPGIDRP+ R DF + G+ E +++ G+ Sbjct: 65 AVSATLDVEDPILDSYALEVSSPGIDRPLTRLKDFEMFEGYEAKIETSELIDGRRRFKGE 124 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + G + + E+ GE + I + FD L A+L++TD+L++ L + L Sbjct: 125 LAGVEDDEVLINIEEHGET----ITIGLKFDWLSDAKLVLTDDLIKEMLRQRKAAGTL 178 >gi|182678036|ref|YP_001832182.1| hypothetical protein Bind_1050 [Beijerinckia indica subsp. indica ATCC 9039] gi|259585728|sp|B2IIK0|RIMP_BEII9 RecName: Full=Ribosome maturation factor rimP gi|182633919|gb|ACB94693.1| protein of unknown function DUF150 [Beijerinckia indica subsp. indica ATCC 9039] Length = 314 Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 60/194 (30%), Positives = 103/194 (53%), Gaps = 6/194 (3%) Query: 2 ESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDD 61 + + +EPR+ + G+A ++ + PV+ ++ R V++ + + +QI ER D Sbjct: 17 QPLSPDAALHEPRLLQESGIAARVAVLAAPVLADLGLRLVRVKISGQNGTTVQIMAERPD 76 Query: 62 GNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 G M + CE +S+A+SP+LDVE+ ++ Y LE+SSPGIDRP+VR SDF R G V E+ Sbjct: 77 GTMDVEACESVSEALSPVLDVEDPVKQAYHLEISSPGIDRPLVRLSDFERALGQEVRVEL 136 Query: 122 VLSSGDKQKLIGKIMGTS------ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +++ G I + L + K E ++ + D L ARL++T Sbjct: 137 KTGLAGRKRFRGTIGPIEASSPIGGSKGALRLTRTDAKPEEETEVLLPLDDLHEARLVLT 196 Query: 176 DELLRASLNNYGSY 189 ++L+R +L + Sbjct: 197 EDLIRQALRAAKAA 210 >gi|163737948|ref|ZP_02145364.1| hypothetical protein RGBS107_06039 [Phaeobacter gallaeciensis BS107] gi|161388564|gb|EDQ12917.1| hypothetical protein RGBS107_06039 [Phaeobacter gallaeciensis BS107] Length = 196 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 58/178 (32%), Positives = 93/178 (52%), Gaps = 4/178 (2%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ +I PVIE++ F V+I L+ K LQI ++ DG + + C E+S Sbjct: 5 LIAKAAIDRRLAEIITPVIEDLGFELVRIRLMSGKTTTLQIMADKPDGGIEVDGCAEISN 64 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S LDVE+ I Y LEVSSPGIDRP+ R DF + G+ E +++ G+ Sbjct: 65 AVSATLDVEDPILDSYALEVSSPGIDRPLTRLKDFEMFEGYEAKIETSELIDGRRRFKGE 124 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + G + E+ GE + I + FD L A+L++TD+L++ L + L Sbjct: 125 LAGVEGDEVLINIEEHGET----ITIGLKFDWLSDAKLVLTDDLIKEMLRQRKAAGTL 178 >gi|294675769|ref|YP_003576384.1| hypothetical protein RCAP_rcc00212 [Rhodobacter capsulatus SB 1003] gi|294474589|gb|ADE83977.1| protein of unknown function DUF150 [Rhodobacter capsulatus SB 1003] Length = 199 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 62/176 (35%), Positives = 96/176 (54%), Gaps = 4/176 (2%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + G+ ++ +I P IE + F V+I + ++ LLQI +R +G + + DC +S Sbjct: 4 LIAKTGIDRRLADIIGPTIEGLGFELVRIRMQGGRHPLLQIMADRPEGGIDVDDCGAIST 63 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S +LDVE+ IE Y LEVSSPGIDRP+ R DF W G+ E +++ G Sbjct: 64 AVSAVLDVEDPIEEKYTLEVSSPGIDRPLTRLKDFDVWEGYEARIETEEQIDGRKRFKGI 123 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 + GT + +E E +GE ++ I + FD L A+LI+TDEL+ L + Sbjct: 124 LRGTEDDEVLIEIENQGE----QVTIGLKFDWLSDAKLILTDELIAEMLRQRKAAG 175 >gi|254718199|ref|ZP_05180010.1| hypothetical protein Bru83_01396 [Brucella sp. 83/13] gi|265983157|ref|ZP_06095892.1| conserved hypothetical protein [Brucella sp. 83/13] gi|306837713|ref|ZP_07470582.1| Protein of unknown function DUF150 [Brucella sp. NF 2653] gi|306843579|ref|ZP_07476180.1| Protein of unknown function DUF150 [Brucella sp. BO1] gi|264661749|gb|EEZ32010.1| conserved hypothetical protein [Brucella sp. 83/13] gi|306276270|gb|EFM57970.1| Protein of unknown function DUF150 [Brucella sp. BO1] gi|306407271|gb|EFM63481.1| Protein of unknown function DUF150 [Brucella sp. NF 2653] Length = 219 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 69/187 (36%), Positives = 107/187 (57%), Gaps = 2/187 (1%) Query: 2 ESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDD 61 T + + RI + G+ ++ +++PVI + FR V++ L LQI ER D Sbjct: 8 NETETPVAVADERIIRETGIDAKVAGIVEPVINTLGFRLVRVRLSGLNGQTLQIMAERPD 67 Query: 62 GNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 G MT+ DCE +S+ ++P+LDVE+ I G Y LE+SSPGIDRP+VRKSDF W GH+ E Sbjct: 68 GTMTVDDCELVSRTVAPVLDVEDPISGKYHLEISSPGIDRPLVRKSDFSDWAGHIAKVET 127 Query: 122 VLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRA 181 + ++K G+I+ +E ++ NE + I FD + ARL++TD+L+R Sbjct: 128 SIVHEGRKKFRGRIVVGDADSVTIESDQISY--GNEPVVRIPFDLISDARLVLTDDLIRD 185 Query: 182 SLNNYGS 188 +L + Sbjct: 186 ALRKDKA 192 >gi|148251678|ref|YP_001236263.1| hypothetical protein BBta_0054 [Bradyrhizobium sp. BTAi1] gi|166919104|sp|A5E863|RIMP_BRASB RecName: Full=Ribosome maturation factor rimP gi|146403851|gb|ABQ32357.1| hypothetical protein BBta_0054 [Bradyrhizobium sp. BTAi1] Length = 253 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 61/178 (34%), Positives = 109/178 (61%), Gaps = 2/178 (1%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 EPR+ + G+A +++V +PV++ M +R V+I + E +Q+ ER DG M + DCE Sbjct: 16 EPRLVVEPGVAARVAAVAEPVLQGMGYRLVRIRISGEAGCTVQVMAERPDGTMQIEDCEA 75 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+A+SP+LD+ + I+ YRLE+SSPGIDRP+VR++DF R GH+V E+ ++ ++++ Sbjct: 76 VSRALSPVLDIADPIDRAYRLEISSPGIDRPLVRRTDFERHIGHLVKIEMAVAHQNRKRF 135 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSY 189 G I G G + ++ + + + + + A+L++TDEL+ S+ + Sbjct: 136 RGIITGLDGDGVCITRDDVAKD--QDPSVVLPMTDIGDAKLVLTDELIAESMRRGKAA 191 >gi|316931576|ref|YP_004106558.1| hypothetical protein Rpdx1_0181 [Rhodopseudomonas palustris DX-1] gi|315599290|gb|ADU41825.1| protein of unknown function DUF150 [Rhodopseudomonas palustris DX-1] Length = 259 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 63/178 (35%), Positives = 106/178 (59%), Gaps = 2/178 (1%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 EPR+ + G+A +V +PV+ M +R V+I + E +QI ER DG M + DCE Sbjct: 16 EPRLVIEPGVAARFCAVAEPVLLAMGYRLVRIKVSGEAGCTVQIMAERPDGTMLIDDCEA 75 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+A+SP+LDV + I+ YRLE+SSPGIDRP+VR+SDF R+ GH+V E+ ++ +++ Sbjct: 76 VSRALSPVLDVADPIDRAYRLEISSPGIDRPLVRRSDFARYAGHLVKVEMAVAHQGRKRF 135 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSY 189 G + G +++++ + + ++ + ARL++TDEL+ S+ Sbjct: 136 RGLLDGVEGDAVRIQRDEA--PKGEDPLVLLAMHDIGDARLVLTDELVAESMRRGKQA 191 >gi|298293855|ref|YP_003695794.1| hypothetical protein Snov_3905 [Starkeya novella DSM 506] gi|296930366|gb|ADH91175.1| protein of unknown function DUF150 [Starkeya novella DSM 506] Length = 270 Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 63/178 (35%), Positives = 99/178 (55%), Gaps = 2/178 (1%) Query: 11 YEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCE 70 EPR+ + G A ++ ++ PV+E + FR V++ + LQI ER DG+ + +CE Sbjct: 25 DEPRLVTESGPAARVAGIVGPVLEGLGFRLVRVRISGGSPPTLQIMAERPDGSFGIDECE 84 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 S+AISP+LDVE+ I G Y LE+SSPGIDRP+ R SDF RW GH V E+ + +++ Sbjct: 85 AASRAISPVLDVEDPISGAYNLEMSSPGIDRPLARLSDFERWAGHDVKVEMAVPVDGRKR 144 Query: 131 LIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGS 188 G ++G + + +A+ + ARL++TD L+R +L + Sbjct: 145 FRGILVGAQREEALVRLPDAPADKPD--TVALPISDIGEARLVMTDALIREALRRDKA 200 >gi|17988251|ref|NP_540885.1| hypothetical protein BMEI1968 [Brucella melitensis bv. 1 str. 16M] gi|23503010|ref|NP_699137.1| hypothetical protein BR2162 [Brucella suis 1330] gi|148560565|ref|YP_001259956.1| hypothetical protein BOV_2074 [Brucella ovis ATCC 25840] gi|161620070|ref|YP_001593957.1| hypothetical protein BCAN_A2204 [Brucella canis ATCC 23365] gi|163844175|ref|YP_001628580.1| hypothetical protein BSUIS_A1999 [Brucella suis ATCC 23445] gi|225853587|ref|YP_002733820.1| hypothetical protein BMEA_A2222 [Brucella melitensis ATCC 23457] gi|254690293|ref|ZP_05153547.1| hypothetical protein Babob68_08992 [Brucella abortus bv. 6 str. 870] gi|254694781|ref|ZP_05156609.1| hypothetical protein Babob3T_08988 [Brucella abortus bv. 3 str. Tulya] gi|254700791|ref|ZP_05162619.1| hypothetical protein Bsuib55_08022 [Brucella suis bv. 5 str. 513] gi|254705160|ref|ZP_05166988.1| hypothetical protein Bsuib36_14811 [Brucella suis bv. 3 str. 686] gi|254709136|ref|ZP_05170947.1| hypothetical protein BpinB_02482 [Brucella pinnipedialis B2/94] gi|254713439|ref|ZP_05175250.1| hypothetical protein BcetM6_08809 [Brucella ceti M644/93/1] gi|254716205|ref|ZP_05178016.1| hypothetical protein BcetM_07186 [Brucella ceti M13/05/1] gi|256030661|ref|ZP_05444275.1| hypothetical protein BpinM2_08407 [Brucella pinnipedialis M292/94/1] gi|256045765|ref|ZP_05448643.1| hypothetical protein Bmelb1R_14765 [Brucella melitensis bv. 1 str. Rev.1] gi|256112484|ref|ZP_05453405.1| hypothetical protein Bmelb3E_07358 [Brucella melitensis bv. 3 str. Ether] gi|256158663|ref|ZP_05456546.1| hypothetical protein BcetM4_07321 [Brucella ceti M490/95/1] gi|256254067|ref|ZP_05459603.1| hypothetical protein BcetB_07163 [Brucella ceti B1/94] gi|256258546|ref|ZP_05464082.1| hypothetical protein Babob9C_14597 [Brucella abortus bv. 9 str. C68] gi|256262929|ref|ZP_05465461.1| conserved hypothetical protein [Brucella melitensis bv. 2 str. 63/9] gi|256370557|ref|YP_003108068.1| hypothetical protein BMI_I2183 [Brucella microti CCM 4915] gi|260563061|ref|ZP_05833547.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|260567371|ref|ZP_05837841.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] gi|260755833|ref|ZP_05868181.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870] gi|260884858|ref|ZP_05896472.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|261215108|ref|ZP_05929389.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya] gi|261217979|ref|ZP_05932260.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261221208|ref|ZP_05935489.1| conserved hypothetical protein [Brucella ceti B1/94] gi|261316636|ref|ZP_05955833.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261321171|ref|ZP_05960368.1| hypothetical protein BAIG_01745 [Brucella ceti M644/93/1] gi|261751300|ref|ZP_05995009.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261755865|ref|ZP_05999574.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|265987708|ref|ZP_06100265.1| hypothetical protein BALG_00285 [Brucella pinnipedialis M292/94/1] gi|265992182|ref|ZP_06104739.1| hypothetical protein BAMG_02674 [Brucella melitensis bv. 1 str. Rev.1] gi|265993920|ref|ZP_06106477.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|265997169|ref|ZP_06109726.1| hypothetical protein BAPG_00290 [Brucella ceti M490/95/1] gi|294851386|ref|ZP_06792059.1| hypothetical protein BAZG_00287 [Brucella sp. NVSL 07-0026] gi|297247385|ref|ZP_06931103.1| hypothetical protein BAYG_00286 [Brucella abortus bv. 5 str. B3196] gi|54040492|sp|P67213|RIMP_BRUSU RecName: Full=Ribosome maturation factor rimP gi|54042664|sp|P67212|RIMP_BRUME RecName: Full=Ribosome maturation factor rimP gi|166980272|sp|A5VTA9|RIMP_BRUO2 RecName: Full=Ribosome maturation factor rimP gi|189039426|sp|B0CK08|RIMP_BRUSI RecName: Full=Ribosome maturation factor rimP gi|189039778|sp|A9M9Z1|RIMP_BRUC2 RecName: Full=Ribosome maturation factor rimP gi|254801690|sp|C0RG44|RIMP_BRUMB RecName: Full=Ribosome maturation factor rimP gi|17984019|gb|AAL53149.1| protein associated with nus operon [Brucella melitensis bv. 1 str. 16M] gi|23349050|gb|AAN31052.1| conserved hypothetical protein [Brucella suis 1330] gi|148371822|gb|ABQ61801.1| conserved hypothetical protein [Brucella ovis ATCC 25840] gi|161336881|gb|ABX63186.1| hypothetical protein BCAN_A2204 [Brucella canis ATCC 23365] gi|163674898|gb|ABY39009.1| Hypothetical protein BSUIS_A1999 [Brucella suis ATCC 23445] gi|225641952|gb|ACO01866.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457] gi|256000720|gb|ACU49119.1| hypothetical protein BMI_I2183 [Brucella microti CCM 4915] gi|260153077|gb|EEW88169.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|260156889|gb|EEW91969.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] gi|260675941|gb|EEX62762.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870] gi|260874386|gb|EEX81455.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|260916715|gb|EEX83576.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya] gi|260919792|gb|EEX86445.1| conserved hypothetical protein [Brucella ceti B1/94] gi|260923068|gb|EEX89636.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261293861|gb|EEX97357.1| hypothetical protein BAIG_01745 [Brucella ceti M644/93/1] gi|261295859|gb|EEX99355.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261741053|gb|EEY28979.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261745618|gb|EEY33544.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|262551637|gb|EEZ07627.1| hypothetical protein BAPG_00290 [Brucella ceti M490/95/1] gi|262764901|gb|EEZ10822.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|263003248|gb|EEZ15541.1| hypothetical protein BAMG_02674 [Brucella melitensis bv. 1 str. Rev.1] gi|263092803|gb|EEZ16978.1| conserved hypothetical protein [Brucella melitensis bv. 2 str. 63/9] gi|264659905|gb|EEZ30166.1| hypothetical protein BALG_00285 [Brucella pinnipedialis M292/94/1] gi|294819975|gb|EFG36974.1| hypothetical protein BAZG_00287 [Brucella sp. NVSL 07-0026] gi|297174554|gb|EFH33901.1| hypothetical protein BAYG_00286 [Brucella abortus bv. 5 str. B3196] gi|326410160|gb|ADZ67225.1| conserved hypothetical protein [Brucella melitensis M28] gi|326539878|gb|ADZ88093.1| conserved hypothetical protein [Brucella melitensis M5-90] Length = 219 Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 69/187 (36%), Positives = 107/187 (57%), Gaps = 2/187 (1%) Query: 2 ESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDD 61 T + + RI + G+ ++ +++PVI + FR V++ L LQI ER D Sbjct: 8 NETETPVAVADERIIRETGIDAKVAGIVEPVINTLGFRLVRVRLSGLNGQTLQIMAERPD 67 Query: 62 GNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 G MT+ DCE +S+ ++P+LDVE+ I G Y LE+SSPGIDRP+VRKSDF W GH+ E Sbjct: 68 GTMTVDDCELVSRTVAPVLDVEDPISGKYHLEISSPGIDRPLVRKSDFSDWAGHIAKVET 127 Query: 122 VLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRA 181 + ++K G+I+ +E ++ NE + I FD + ARL++TD+L+R Sbjct: 128 SIVHEGRKKFRGRIVVGEADSVTIESDQISY--GNEPVVRIPFDLISDARLVLTDDLIRD 185 Query: 182 SLNNYGS 188 +L + Sbjct: 186 ALRKDKA 192 >gi|119385318|ref|YP_916374.1| hypothetical protein Pden_2591 [Paracoccus denitrificans PD1222] gi|259586172|sp|A1B584|RIMP_PARDP RecName: Full=Ribosome maturation factor rimP gi|119375085|gb|ABL70678.1| protein of unknown function DUF150 [Paracoccus denitrificans PD1222] Length = 206 Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 60/180 (33%), Positives = 91/180 (50%), Gaps = 8/180 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ +I PVIE++ F V+I L K LQI +R +G + + DC ++S Sbjct: 4 LIAKTAIDRRLAEIISPVIEDLGFELVRIRLQGGKTATLQIMADRPEGGINVDDCADIST 63 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S ILDVE+ +E Y LEVSSPGIDRP+ R DF + G+ E +++ G Sbjct: 64 AVSAILDVEDPLEDAYHLEVSSPGIDRPLTRLKDFETFEGYEARLETNQPIDGRKRFKGV 123 Query: 135 IMGTS----ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 + G L E+ GE I ++FD L A+L++TDEL+ L Sbjct: 124 LAGVEKGEGGDEVLLNIEEGGET----QTIGLNFDWLSDAKLVLTDELIAEMLRQKKDAG 179 >gi|153008086|ref|YP_001369301.1| hypothetical protein Oant_0750 [Ochrobactrum anthropi ATCC 49188] gi|167016790|sp|A6WWW8|RIMP_OCHA4 RecName: Full=Ribosome maturation factor rimP gi|151559974|gb|ABS13472.1| protein of unknown function DUF150 [Ochrobactrum anthropi ATCC 49188] Length = 224 Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats. Identities = 70/187 (37%), Positives = 108/187 (57%), Gaps = 2/187 (1%) Query: 2 ESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDD 61 L + + RI + G+ ++S+I+PVI + FR V++ L LQI ER D Sbjct: 8 NEAETLAAGADERIIRETGIDAKVASIIEPVINTLGFRLVRVRLSGLNGQTLQIMAERPD 67 Query: 62 GNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 G MT+ DCE +S+ ++P+LDVE+ I G Y LE+SSPGIDRP+VRKSDF W GH+ E Sbjct: 68 GTMTVDDCELVSRTVAPVLDVEDPISGKYHLEISSPGIDRPLVRKSDFADWAGHIAKVET 127 Query: 122 VLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRA 181 + ++K G+I+ +E ++ +E + I FD + ARL++TD+L+R Sbjct: 128 SVVHEGRKKFRGRIVLGDAESVVIESDQISY--GSEPVVRIPFDLISDARLVLTDDLIRD 185 Query: 182 SLNNYGS 188 +L + Sbjct: 186 ALRKDKA 192 >gi|86747723|ref|YP_484219.1| hypothetical protein RPB_0597 [Rhodopseudomonas palustris HaA2] gi|123408929|sp|Q2J2K2|RIMP_RHOP2 RecName: Full=Ribosome maturation factor rimP gi|86570751|gb|ABD05308.1| Protein of unknown function DUF150 [Rhodopseudomonas palustris HaA2] Length = 259 Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats. Identities = 66/179 (36%), Positives = 106/179 (59%), Gaps = 3/179 (1%) Query: 11 YEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCE 70 EPR+ + G+A +V +PV+ M +R V+I + E +QI ER DG M + DCE Sbjct: 15 DEPRLVVEPGVAARFGAVAEPVLLAMGYRLVRIKVSAEAGCTVQIMAERPDGTMLIEDCE 74 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 +S+A+SP+LDV + IE YRLE+SSPGIDRP+VR+SDF R++GH+V E+ + +++ Sbjct: 75 AVSKALSPVLDVTDPIEKAYRLEISSPGIDRPLVRRSDFARYSGHLVKIEMAVPHQGRKR 134 Query: 131 LIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSY 189 G + G +++E ++D + + + ARL++TDEL+ S+ Sbjct: 135 YRGLLDGVEGDAIRIQREGVKDED---PLVLLPMHDIGDARLVLTDELIAESMRRGKQA 190 >gi|146278787|ref|YP_001168946.1| hypothetical protein Rsph17025_2754 [Rhodobacter sphaeroides ATCC 17025] gi|166988606|sp|A4WW77|RIMP_RHOS5 RecName: Full=Ribosome maturation factor rimP gi|145557028|gb|ABP71641.1| protein of unknown function DUF150 [Rhodobacter sphaeroides ATCC 17025] Length = 204 Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats. Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 3/178 (1%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ ++ PVIE M F V++ L+ K LQI +R DG + + +C ++S Sbjct: 4 LVAKTAIDRRLADIVTPVIEGMGFELVRLRLMSGKTRTLQIMADRPDGGIVVDECADIST 63 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S +LDVE+ IE +Y LEVSSPGIDRP+ R DF W G+ E +++ G+ Sbjct: 64 AVSAVLDVEDPIEDNYTLEVSSPGIDRPLTRLKDFDAWAGYEARIETAELIDGRRRFKGE 123 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + GT + E E + I + FD L A+LI+TDEL+ L + Sbjct: 124 LAGTEGDEVLITIEDGKE---GFVTIGLKFDWLSDAKLILTDELIAEMLRQKKASGNF 178 >gi|222147146|ref|YP_002548103.1| hypothetical protein Avi_0164 [Agrobacterium vitis S4] gi|259585691|sp|B9JYK3|RIMP_AGRVS RecName: Full=Ribosome maturation factor rimP gi|221734136|gb|ACM35099.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 204 Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats. Identities = 80/184 (43%), Positives = 116/184 (63%), Gaps = 2/184 (1%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 M EPR+ + GL I+ +I+PVI E+ F V++ +L + + LQI ER Sbjct: 1 MSEHVPADEAPEPRLITETGLDRRIADIIEPVIVELGFELVRVRILNQNGMTLQIMAERK 60 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 DG MT+ DCEELS AISP+LDVE+ ++ Y LEVSSPGIDRPMVR SDF RW G+++ CE Sbjct: 61 DGTMTVEDCEELSMAISPVLDVEDPVDKEYHLEVSSPGIDRPMVRASDFTRWQGNLLKCE 120 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 + ++++ GKI + GF LE+++ E ++ I F +L A+LI+TD+L+R Sbjct: 121 TSILIDNRKRFRGKIADVTPDGFILERDQVAY--GEEPRLTIPFTALAEAKLILTDDLVR 178 Query: 181 ASLN 184 +L Sbjct: 179 DALR 182 >gi|62290999|ref|YP_222792.1| hypothetical protein BruAb1_2135 [Brucella abortus bv. 1 str. 9-941] gi|82700908|ref|YP_415482.1| hypothetical protein BAB1_2162 [Brucella melitensis biovar Abortus 2308] gi|189025211|ref|YP_001935979.1| hypothetical protein BAbS19_I20230 [Brucella abortus S19] gi|237816501|ref|ZP_04595494.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A] gi|254696409|ref|ZP_05158237.1| hypothetical protein Babob28_01503 [Brucella abortus bv. 2 str. 86/8/59] gi|254731322|ref|ZP_05189900.1| hypothetical protein Babob42_09020 [Brucella abortus bv. 4 str. 292] gi|260546262|ref|ZP_05822002.1| conserved hypothetical protein [Brucella abortus NCTC 8038] gi|260759056|ref|ZP_05871404.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|260760781|ref|ZP_05873124.1| conserved hypothetical protein [Brucella abortus bv. 2 str. 86/8/59] gi|75496020|sp|Q57AA3|RIMP_BRUAB RecName: Full=Ribosome maturation factor rimP gi|91208402|sp|Q2YQS0|RIMP_BRUA2 RecName: Full=Ribosome maturation factor rimP gi|259585733|sp|B2S9F3|RIMP_BRUA1 RecName: Full=Ribosome maturation factor rimP gi|62197131|gb|AAX75431.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941] gi|82617009|emb|CAJ12118.1| Domain of unknown function DUF150 [Brucella melitensis biovar Abortus 2308] gi|189020783|gb|ACD73505.1| Domain of unknown function DUF150 [Brucella abortus S19] gi|237788568|gb|EEP62783.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A] gi|260096369|gb|EEW80245.1| conserved hypothetical protein [Brucella abortus NCTC 8038] gi|260669374|gb|EEX56314.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|260671213|gb|EEX58034.1| conserved hypothetical protein [Brucella abortus bv. 2 str. 86/8/59] Length = 219 Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats. Identities = 69/187 (36%), Positives = 107/187 (57%), Gaps = 2/187 (1%) Query: 2 ESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDD 61 T + + RI + G+ ++ +++PVI + FR V++ L LQI ER D Sbjct: 8 NETETPVAVADERIIRETGIDAKVAGIVEPVINTLGFRLVRVRLSGLNGQTLQIMAERPD 67 Query: 62 GNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 G MT+ DCE +S+ ++P+LDVE+ I G Y LE+SSPGIDRP+VRKSDF W GH+ E Sbjct: 68 GTMTVDDCELVSRTVAPVLDVEDPISGKYHLEISSPGIDRPLVRKSDFSDWAGHIAKVET 127 Query: 122 VLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRA 181 + ++K G+I+ +E ++ NE + I FD + ARL++TD+L+R Sbjct: 128 SIVHEGRKKFRGRIVVGEADSVTIESDQISY--GNEPVVRIPFDLISDARLVLTDDLIRD 185 Query: 182 SLNNYGS 188 +L + Sbjct: 186 ALRKDKA 192 >gi|77464743|ref|YP_354247.1| hypothetical protein RSP_1162 [Rhodobacter sphaeroides 2.4.1] gi|91208409|sp|Q3IYN8|RIMP_RHOS4 RecName: Full=Ribosome maturation factor rimP gi|77389161|gb|ABA80346.1| hypothetical protein RSP_1162 [Rhodobacter sphaeroides 2.4.1] Length = 204 Score = 204 bits (521), Expect = 4e-51, Method: Composition-based stats. Identities = 59/178 (33%), Positives = 92/178 (51%), Gaps = 3/178 (1%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ ++ PVIE M F V++ L+ K LQI +R DG + + +C E+S Sbjct: 4 LVAKTAIDRRLADIVTPVIEGMGFELVRLRLMSGKTRTLQIMADRPDGGIVVDECAEIST 63 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S LDVE+ IE +Y LEVSSPGIDRP+ R DF W G+ E +++ G+ Sbjct: 64 AVSAALDVEDPIEENYTLEVSSPGIDRPLTRLKDFEVWTGYEARIETTELIDGRRRFKGE 123 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + GT + E + + I + FD L A+LI+T+EL+ L + Sbjct: 124 LAGTEGDEVLITIEDG---RDSYVTIGLKFDWLADAKLILTEELIAEMLRQKKASGNF 178 >gi|110636251|ref|YP_676459.1| hypothetical protein Meso_3927 [Mesorhizobium sp. BNC1] gi|123352956|sp|Q11BD1|RIMP_MESSB RecName: Full=Ribosome maturation factor rimP gi|110287235|gb|ABG65294.1| protein of unknown function DUF150 [Chelativorans sp. BNC1] Length = 220 Score = 204 bits (521), Expect = 4e-51, Method: Composition-based stats. Identities = 66/176 (37%), Positives = 109/176 (61%), Gaps = 2/176 (1%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 + RI + G A +++++ PV++ + +R V++ L + L LQI ER DG MT+ DCEE Sbjct: 3 DDRIIRETGAAARVAAIVMPVLDALGYRLVRVRLSAQDGLTLQIMAERPDGTMTVDDCEE 62 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+A+SP LDVE+ I+ Y+LE+SSPGIDRP+VR SDF GH+ E + +++ Sbjct: 63 VSRAVSPALDVEDPIDSAYQLEISSPGIDRPLVRLSDFQAALGHLAKVETSVMVDGRKRF 122 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYG 187 G+I+G + +E++K E + + I D++ A+L++TD L+R +L Sbjct: 123 RGQIVGCTGETLTIERDKVAEGEAPLAE--IPLDAISDAKLVLTDALIREALKKDK 176 >gi|126738453|ref|ZP_01754158.1| hypothetical protein RSK20926_08312 [Roseobacter sp. SK209-2-6] gi|126720252|gb|EBA16958.1| hypothetical protein RSK20926_08312 [Roseobacter sp. SK209-2-6] Length = 197 Score = 204 bits (520), Expect = 5e-51, Method: Composition-based stats. Identities = 61/178 (34%), Positives = 97/178 (54%), Gaps = 4/178 (2%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ ++ PVIE++ F V+I L+ K LQI ++ +G + + DC E+S Sbjct: 5 LIAKAAIDRRLAEILIPVIEDLGFELVRIRLMSGKTTTLQIMADKPEGGIEVDDCAEISN 64 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S LDVE+ I Y LEVSSPGIDRP+ R DF + G+ E G +++ G+ Sbjct: 65 AVSATLDVEDPILDAYSLEVSSPGIDRPLTRMKDFDMFEGYEAKLETEELVGGRRRFKGE 124 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + GT E + E +GE + I + FD L A+L++TDEL++ L + L Sbjct: 125 LAGTEEDEVLINIEDQGET----VTIGLKFDWLTDAKLVLTDELIKEMLRQRKAAGTL 178 >gi|256060122|ref|ZP_05450304.1| hypothetical protein Bneo5_07156 [Brucella neotomae 5K33] gi|261324099|ref|ZP_05963296.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261300079|gb|EEY03576.1| conserved hypothetical protein [Brucella neotomae 5K33] Length = 219 Score = 204 bits (520), Expect = 5e-51, Method: Composition-based stats. Identities = 69/187 (36%), Positives = 107/187 (57%), Gaps = 2/187 (1%) Query: 2 ESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDD 61 T + + RI + G+ ++ +++PVI + FR V++ L LQI ER D Sbjct: 8 NETETPVAVADERIIRETGIDAKVAGIVEPVINTLGFRLVRVRLSGLNGQTLQIMAERPD 67 Query: 62 GNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 G MT+ DCE +S+ ++P+LDVE+ I G Y LE+SSPGIDRP+VRKSDF W GH+ E Sbjct: 68 GTMTVDDCELVSRTVAPVLDVEDPISGKYHLEISSPGIDRPLVRKSDFSDWAGHITKVET 127 Query: 122 VLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRA 181 + ++K G+I+ +E ++ NE + I FD + ARL++TD+L+R Sbjct: 128 SIVHEGRKKFRGRIVVGEADSVTIESDQISY--GNEPVVRIPFDLISDARLVLTDDLIRD 185 Query: 182 SLNNYGS 188 +L + Sbjct: 186 ALRKDKA 192 >gi|225626527|ref|ZP_03784566.1| Protein of unknown function DUF150 [Brucella ceti str. Cudo] gi|260169565|ref|ZP_05756376.1| hypothetical protein BruF5_14639 [Brucella sp. F5/99] gi|261759093|ref|ZP_06002802.1| conserved hypothetical protein [Brucella sp. F5/99] gi|225618184|gb|EEH15227.1| Protein of unknown function DUF150 [Brucella ceti str. Cudo] gi|261739077|gb|EEY27073.1| conserved hypothetical protein [Brucella sp. F5/99] Length = 219 Score = 204 bits (520), Expect = 5e-51, Method: Composition-based stats. Identities = 68/187 (36%), Positives = 106/187 (56%), Gaps = 2/187 (1%) Query: 2 ESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDD 61 T + + RI + G+ ++ +++PVI + FR V++ L LQI ER D Sbjct: 8 NETETPVAVADERIIRETGIDAKVAGIVEPVINTLGFRLVRVRLSGLNGQTLQIMAERPD 67 Query: 62 GNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 G MT+ DCE +S+ ++P+LDVE+ I G Y LE+SSPGIDRP+VRKSDF W GH+ E Sbjct: 68 GTMTVDDCELVSRTVAPVLDVEDPISGKYHLEISSPGIDRPLVRKSDFSDWAGHIAKVET 127 Query: 122 VLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRA 181 + ++K G+I+ +E ++ NE + I FD + ARL++TD+ +R Sbjct: 128 SIVHEGRKKFRGRIVVGEADSVTIESDQISY--GNEPVVRIPFDLISDARLVLTDDFIRD 185 Query: 182 SLNNYGS 188 +L + Sbjct: 186 ALRKDKA 192 >gi|126463583|ref|YP_001044697.1| hypothetical protein Rsph17029_2823 [Rhodobacter sphaeroides ATCC 17029] gi|166988525|sp|A3PNK9|RIMP_RHOS1 RecName: Full=Ribosome maturation factor rimP gi|126105247|gb|ABN77925.1| protein of unknown function DUF150 [Rhodobacter sphaeroides ATCC 17029] Length = 204 Score = 204 bits (519), Expect = 7e-51, Method: Composition-based stats. Identities = 59/178 (33%), Positives = 92/178 (51%), Gaps = 3/178 (1%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ ++ PVIE M F V++ L+ K LQI +R DG + + +C E+S Sbjct: 4 LVAKTAIDRRLADIVTPVIEGMGFELVRLRLMSGKTRTLQIMADRPDGGIVVDECAEIST 63 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S LDVE+ IE +Y LEVSSPGIDRP+ R DF W G+ E +++ G+ Sbjct: 64 AVSAALDVEDPIEENYTLEVSSPGIDRPLTRLKDFDVWTGYEARIETTELIDGRRRFKGE 123 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + GT + E + + I + FD L A+LI+T+EL+ L + Sbjct: 124 LAGTEGDEVLITIEDG---RDSYVTIGLKFDWLADAKLILTEELIAEMLRQKKASGNF 178 >gi|239833210|ref|ZP_04681539.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301] gi|239825477|gb|EEQ97045.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301] Length = 240 Score = 203 bits (518), Expect = 7e-51, Method: Composition-based stats. Identities = 66/181 (36%), Positives = 106/181 (58%), Gaps = 2/181 (1%) Query: 8 HSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLR 67 + + RI + G+ ++ +++PV+ + FR V++ L LQI ER DG MT+ Sbjct: 30 AAGADERIIRETGIDAKVAGIVEPVLNTLGFRLVRVRLSGLNGQTLQIMAERPDGTMTVD 89 Query: 68 DCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD 127 DCE +S+ ++P+LDVE+ I G Y LE+SSPGIDRP+VRKSDF W GH+ E + Sbjct: 90 DCELVSRTVAPVLDVEDPINGKYHLEISSPGIDRPLVRKSDFADWAGHIAKVETSIVHEG 149 Query: 128 KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYG 187 ++K G+I+ +E ++ +E + I FD + ARL++TD+L+R +L Sbjct: 150 RKKFRGRIVLGDAESVVIESDQISY--GSEPVVRIPFDLISDARLVLTDDLIRDALRKDK 207 Query: 188 S 188 + Sbjct: 208 A 208 >gi|221640657|ref|YP_002526919.1| hypothetical protein RSKD131_2558 [Rhodobacter sphaeroides KD131] gi|254765045|sp|B9KPN3|RIMP_RHOSK RecName: Full=Ribosome maturation factor rimP gi|221161438|gb|ACM02418.1| Hypothetical Protein RSKD131_2558 [Rhodobacter sphaeroides KD131] Length = 204 Score = 203 bits (518), Expect = 8e-51, Method: Composition-based stats. Identities = 59/178 (33%), Positives = 91/178 (51%), Gaps = 3/178 (1%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ ++ PVIE M F V++ L+ K LQI +R DG + + +C E+S Sbjct: 4 LVAKTAIDRRLADIVTPVIEGMGFELVRLRLMSGKTRTLQIMADRPDGGIVVDECAEIST 63 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S LDVE+ IE +Y LEVSSPGIDRP+ R DF W G+ E +++ G+ Sbjct: 64 AVSAALDVEDPIEENYTLEVSSPGIDRPLTRLKDFDVWTGYEARIETTELIDGRRRFKGE 123 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + GT + E + I + FD L A+LI+T+EL+ L + Sbjct: 124 LAGTEGDEVLITIEDG---RDGYVTIGLKFDWLADAKLILTEELIAEMLRQKKASGNF 178 >gi|126724628|ref|ZP_01740471.1| hypothetical protein RB2150_12371 [Rhodobacterales bacterium HTCC2150] gi|126705792|gb|EBA04882.1| hypothetical protein RB2150_12371 [Rhodobacterales bacterium HTCC2150] Length = 228 Score = 203 bits (518), Expect = 8e-51, Method: Composition-based stats. Identities = 57/178 (32%), Positives = 96/178 (53%), Gaps = 8/178 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + +++++ PVIE++ V++ L+ K +LQI VE+ +G + + DC ++S Sbjct: 42 LIAKAAIDQRMANIVTPVIEDLGCELVRVRLMTGKENILQIMVEKPEGGIEVDDCAKVST 101 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S LDVE+ I Y LEVSSPGIDRP+ R DF W+G+ E +++ G+ Sbjct: 102 AVSATLDVEDPILDAYNLEVSSPGIDRPLTRLKDFDMWDGYEAKIETSELIDGRRRFKGQ 161 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + GT + + E E I + F+ L A+L++TDEL+R L + + Sbjct: 162 LAGTQDDEVLITIE--------EGTIGLKFEWLSDAKLVLTDELIRDVLRSRKDAGEI 211 >gi|90420534|ref|ZP_01228441.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1] gi|90335262|gb|EAS49015.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1] Length = 232 Score = 203 bits (518), Expect = 9e-51, Method: Composition-based stats. Identities = 65/166 (39%), Positives = 104/166 (62%), Gaps = 2/166 (1%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELS 73 RI + GL G ++ +++P IE++ +R V++ + LQI ER DG MT+ DCE +S Sbjct: 37 RIVKEQGLEGRVAEIVEPAIEQIGYRLVRVRTSGLNGMTLQIMAERPDGTMTVEDCEAVS 96 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 +A+SP+LDV++ I+ Y LEVSSPGIDRP+VRK DF W G ++ E ++++ G Sbjct: 97 RAVSPVLDVDDPIDKAYHLEVSSPGIDRPLVRKGDFETWAGFLMKLETNRLINERKRYRG 156 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELL 179 KI+ + +E+++ E + I FD++ ARLI+TD+L+ Sbjct: 157 KIVAVGDEAITVERDQPAE--GEPGAVEIPFDAIGEARLILTDDLI 200 >gi|332559636|ref|ZP_08413958.1| ribosome maturation protein RimP [Rhodobacter sphaeroides WS8N] gi|332277348|gb|EGJ22663.1| ribosome maturation protein RimP [Rhodobacter sphaeroides WS8N] Length = 204 Score = 203 bits (518), Expect = 9e-51, Method: Composition-based stats. Identities = 59/178 (33%), Positives = 92/178 (51%), Gaps = 3/178 (1%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ ++ PVIE M F V++ L+ K LQI +R DG + + +C E+S Sbjct: 4 LVAKTAIDRRLADIVTPVIEGMGFELVRLRLMSGKTRTLQIMADRPDGGIVVDECAEIST 63 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S LDVE+ IE +Y LEVSSPGIDRP+ R DF W G+ E +++ G+ Sbjct: 64 AVSAALDVEDPIEENYTLEVSSPGIDRPLTRLKDFDVWTGYEARIETTELIDGRRRFKGE 123 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + GT + E + + I + FD L A+LI+T+EL+ L + Sbjct: 124 LAGTEGDEVLITIEDG---RDSYVTIGLKFDWLSDAKLILTEELIAEMLRQKKASGNF 178 >gi|188582067|ref|YP_001925512.1| hypothetical protein Mpop_2822 [Methylobacterium populi BJ001] gi|259585787|sp|B1ZDR1|RIMP_METPB RecName: Full=Ribosome maturation factor rimP gi|179345565|gb|ACB80977.1| protein of unknown function DUF150 [Methylobacterium populi BJ001] Length = 255 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 62/184 (33%), Positives = 101/184 (54%) Query: 7 LHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTL 66 + E R+ + G+A ++ +++ IE + FR V++ + +QI ER DG M + Sbjct: 1 MAEPTEKRLVSETGVAARVAQIVEGPIEGLGFRLVRVKISNTNGCTVQIMAERPDGTMGV 60 Query: 67 RDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 +CE +S+AISPILD+E+ + G Y LE+SSPGIDRP+VR SDF RW G+ E+ + Sbjct: 61 DECETVSRAISPILDLEDPVGGAYYLEISSPGIDRPLVRVSDFERWAGYEAKVELAVPMD 120 Query: 127 DKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNY 186 +++ G + S G + + K +I + L A L++TD+L+R SL Sbjct: 121 GRKRFRGILGVPSADGATVPIDLPDVKPGLPSRIDLPLRDLGEAHLVLTDDLIRESLRRG 180 Query: 187 GSYA 190 + Sbjct: 181 SAPP 184 >gi|85705697|ref|ZP_01036794.1| hypothetical protein ROS217_10367 [Roseovarius sp. 217] gi|85669687|gb|EAQ24551.1| hypothetical protein ROS217_10367 [Roseovarius sp. 217] Length = 191 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 54/176 (30%), Positives = 90/176 (51%), Gaps = 8/176 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ +I PVIE++ + V++ L+ + LQI ++ DG + + DC +S Sbjct: 5 LIAKAAIDRRMAEIITPVIEDLGYELVRVRLMGGQYHTLQIMADKPDGGIEVDDCAVIST 64 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S +LDVE+ + Y LEVSSPGIDRP+ R DF + G+ E +++ G Sbjct: 65 AVSAVLDVEDPLVEAYTLEVSSPGIDRPLTRLKDFEAFEGYEAKIETTELIDGRRRFKGV 124 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 + G T + E E I + FD L A+L++TDEL++ L + Sbjct: 125 LAGVEGTEVLINVE--------EGTIGLEFDWLSDAKLVLTDELIKEMLRQRKAAG 172 >gi|149202948|ref|ZP_01879919.1| hypothetical protein RTM1035_19436 [Roseovarius sp. TM1035] gi|149143494|gb|EDM31530.1| hypothetical protein RTM1035_19436 [Roseovarius sp. TM1035] Length = 191 Score = 202 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 52/176 (29%), Positives = 90/176 (51%), Gaps = 8/176 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ +I PVIE++ + V++ L+ + LQI ++ +G + + DC +S Sbjct: 5 LIAKAAIDRRLAEIITPVIEDLGYELVRVRLMGGQYHTLQIMADKPEGGIEVDDCAAIST 64 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S +LDVE+ + Y LEVSSPGIDRP+ R DF + G+ E +++ G Sbjct: 65 AVSAVLDVEDPLVEAYTLEVSSPGIDRPLTRLKDFEMFEGYEAKIETTELIDGRRRFKGV 124 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 + G + + E E I + FD L A+L++TDEL++ L + Sbjct: 125 LAGVEGSEVLINVE--------EGTIGLEFDWLSDAKLVLTDELIKEMLRQRKAAG 172 >gi|89052532|ref|YP_507983.1| hypothetical protein Jann_0041 [Jannaschia sp. CCS1] gi|122499897|sp|Q28WF4|RIMP_JANSC RecName: Full=Ribosome maturation factor rimP gi|88862081|gb|ABD52958.1| protein of unknown function DUF150 [Jannaschia sp. CCS1] Length = 194 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 56/176 (31%), Positives = 93/176 (52%), Gaps = 4/176 (2%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ ++ P IE + F V+I ++ K LQI ER DG + + +C ++S Sbjct: 4 LIAKTSMDRRMAEIVTPSIEALGFEVVRIRVMGGKTNTLQIMAERPDGGIDVDECAQISN 63 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 AIS +LDVE+ +E Y LEVSSPGIDRP+ R DF + G+ E G +++ G Sbjct: 64 AISVLLDVEDPLEDAYALEVSSPGIDRPLTRLKDFETFEGYEAKLETTEMIGGQRRFKGV 123 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 + G + + E+ E + + ++FD L A+L++TDEL++ L Sbjct: 124 LAGVEDDEVLVNLEQGSET----VTVGLNFDWLSDAKLVLTDELIKEMLKQRKDAG 175 >gi|159046100|ref|YP_001534894.1| hypothetical protein Dshi_3560 [Dinoroseobacter shibae DFL 12] gi|189040162|sp|A8LQ53|RIMP_DINSH RecName: Full=Ribosome maturation factor rimP gi|157913860|gb|ABV95293.1| protein of unknown function DUF150 [Dinoroseobacter shibae DFL 12] Length = 196 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 57/176 (32%), Positives = 92/176 (52%), Gaps = 8/176 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + L I++++ PVIE++ + V++ ++ K+ LQI E+ +G + + DC +S Sbjct: 4 LIAKTTLDQRIAALVTPVIEDLGYELVRLRVMSGKSPTLQIMAEKPEGGIEVDDCARIST 63 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 +S LDVE+ IE +Y LEVSSPGIDRP+ R DF W G+ E +++ G Sbjct: 64 EVSATLDVEDPIEDNYTLEVSSPGIDRPLTRLKDFDTWVGYEAKIETTELIEGRRRFKGA 123 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 + GT +E E E I + F+ L A+L++TD+L+R L Sbjct: 124 LAGTEGDEVLIEIE--------EGTIGLKFEWLSDAKLVLTDDLIRDVLKGRKDAG 171 >gi|312115895|ref|YP_004013491.1| hypothetical protein Rvan_3197 [Rhodomicrobium vannielii ATCC 17100] gi|311221024|gb|ADP72392.1| protein of unknown function DUF150 [Rhodomicrobium vannielii ATCC 17100] Length = 221 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 59/177 (33%), Positives = 100/177 (56%), Gaps = 2/177 (1%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELS 73 R + G A D++++I+PV+E+M FR V++++ + +QI ++ DG + + DC ++S Sbjct: 21 RFTREFGAAADLAALIEPVLEDMGFRLVRVTMSKRDGATIQIMADKADGAINVDDCAQIS 80 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 + ISP+LD + I+ Y LEVSSPGIDR +VR SDF W G E+ +++ G Sbjct: 81 RRISPLLDAHDPIKDRYYLEVSSPGIDRILVRPSDFEDWAGFETKVELKELIDGRKRFRG 140 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 + G L+ + ++ I + D + A+L++TDEL+RASL + Sbjct: 141 ILEGYENGEMLLQV--QLDEKGEPQTIGLPVDLIHDAKLVLTDELIRASLAKAKAAG 195 >gi|319403632|emb|CBI77217.1| conserved hypothetical protein [Bartonella rochalimae ATCC BAA-1498] Length = 225 Score = 201 bits (513), Expect = 3e-50, Method: Composition-based stats. Identities = 81/188 (43%), Positives = 119/188 (63%), Gaps = 2/188 (1%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 M + EPR+F + G+A +S++I P+++ + FR V+ LL L LQI VER Sbjct: 18 MNEIERMGDIDEPRLFEEDGVAARVSALIIPLLKPLGFRLVRTKLLGLNGLTLQIMVERT 77 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 +G MT+ DCE +S+A++P+LD+EN+IE Y LE+SSPGIDR +VRKSDF+ W GH+ E Sbjct: 78 NGTMTIEDCEIVSRAVAPLLDIENVIERKYHLEISSPGIDRLLVRKSDFVHWQGHLAKIE 137 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 +QKL GK+ ++ GF L EK ++ E+ I ISF ++ +A LI+TDEL+R Sbjct: 138 TNTVIDGRQKLRGKLKDITQNGFTLNIEKTAHRE--EINIFISFSNITNAHLILTDELIR 195 Query: 181 ASLNNYGS 188 +L Sbjct: 196 DTLKKNKD 203 >gi|307942743|ref|ZP_07658088.1| conserved hypothetical protein [Roseibium sp. TrichSKD4] gi|307773539|gb|EFO32755.1| conserved hypothetical protein [Roseibium sp. TrichSKD4] Length = 200 Score = 201 bits (511), Expect = 6e-50, Method: Composition-based stats. Identities = 70/173 (40%), Positives = 109/173 (63%), Gaps = 6/173 (3%) Query: 9 SKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRD 68 S++E RI + GL ++++++PVIE++ FR V+ + LQI ER DG MT+ D Sbjct: 2 SEHEARIVTEQGLDARVAAIVEPVIEDLGFRLVRSKISAANGCTLQIMAERPDGTMTVED 61 Query: 69 CEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 CE +S+A+SP LDV++ I Y LEVSSPGIDRP+VR+SDF+RW+GH V E+ + + Sbjct: 62 CETVSRAVSPALDVDDPISRAYHLEVSSPGIDRPLVRESDFVRWSGHEVKIEMSVLQEGR 121 Query: 129 QKLIGKIMGTS--ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELL 179 ++ G ++G ET L K GE D +++ + A+L++TD+L+ Sbjct: 122 KRFRGTLLGAENGETQIKLPDTKSGEVDA----VSLPIGDIGEAKLVLTDDLI 170 >gi|90422001|ref|YP_530371.1| hypothetical protein RPC_0477 [Rhodopseudomonas palustris BisB18] gi|90104015|gb|ABD86052.1| protein of unknown function DUF150 [Rhodopseudomonas palustris BisB18] Length = 272 Score = 200 bits (510), Expect = 6e-50, Method: Composition-based stats. Identities = 65/176 (36%), Positives = 106/176 (60%), Gaps = 2/176 (1%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 EPR+ + GL +++V PV++ M +R V+I + E +QI ER DG M + DCE Sbjct: 26 EPRLVVEPGLGARVAAVAGPVLQGMGYRLVRIKVSGELGCTVQIMAERPDGTMLVEDCEA 85 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S A+SP+LD+ + +E YRLE+SSPGIDRP+VR+SDF R+ G++V E+ ++ G +++ Sbjct: 86 ISHALSPVLDIADPVERAYRLEISSPGIDRPLVRRSDFERYEGYLVKIEMAVAVGGRKRF 145 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYG 187 G + L +E G +D + + + + SA L++TDEL+ S+ Sbjct: 146 RGLLGPLQGDAVLLARE--GARDGEDPNSLLPLEDIASANLVLTDELIAESMRRGK 199 >gi|259586221|sp|Q21C34|RIMP_RHOPB RecName: Full=Ribosome maturation factor rimP Length = 262 Score = 200 bits (510), Expect = 7e-50, Method: Composition-based stats. Identities = 65/176 (36%), Positives = 106/176 (60%), Gaps = 2/176 (1%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 EPR+ + GL +++V PV++ M +R V+I + E +QI ER DG M + DCE Sbjct: 16 EPRLVVEPGLGARVAAVAGPVLQGMGYRLVRIKVSGELGCTVQIMAERPDGTMLVEDCEA 75 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S A+SP+LD+ + +E YRLE+SSPGIDRP+VR+SDF R+ G++V E+ ++ G +++ Sbjct: 76 ISHALSPVLDIADPVERAYRLEISSPGIDRPLVRRSDFERYEGYLVKIEMAVAVGGRKRF 135 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYG 187 G + L +E G +D + + + + SA L++TDEL+ S+ Sbjct: 136 RGLLGPLQGDAVLLARE--GARDGEDPNSLLPLEDIASANLVLTDELIAESMRRGK 189 >gi|323136837|ref|ZP_08071918.1| protein of unknown function DUF150 [Methylocystis sp. ATCC 49242] gi|322398154|gb|EFY00675.1| protein of unknown function DUF150 [Methylocystis sp. ATCC 49242] Length = 255 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 66/180 (36%), Positives = 100/180 (55%), Gaps = 3/180 (1%) Query: 11 YEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCE 70 EPR+ + G+A ++ + +PV+ ++ FR V++ LL++ LQI ER DG MT+ DCE Sbjct: 14 DEPRLVSETGVAARVAHLAEPVLAQLGFRLVRVRLLQQNGQTLQIMAERPDGTMTIDDCE 73 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG-DKQ 129 SQA+SP LDV ++I YRLE+SSPG+DRP+VR SDF R GH E+ ++ Sbjct: 74 AASQALSPELDVADVIANEYRLEISSPGVDRPLVRVSDFARAVGHEARIELTHPVESGRK 133 Query: 130 KLIGKIMGTSETG--FFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYG 187 + G I G L E+ + E + + L +L++T+ L+R SL Sbjct: 134 RFRGVIQAVEGEGRNAKLTLERLDARSDEEKTVVLPLADLDEGKLMLTEALIRESLRAGK 193 >gi|84500728|ref|ZP_00998977.1| hypothetical protein OB2597_12236 [Oceanicola batsensis HTCC2597] gi|84391681|gb|EAQ04013.1| hypothetical protein OB2597_12236 [Oceanicola batsensis HTCC2597] Length = 189 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 55/178 (30%), Positives = 88/178 (49%), Gaps = 8/178 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ ++ PVIE+M F V++ L+ + LQI ER G + + +C E+S Sbjct: 3 LIAKTAIDRRLAEIVTPVIEDMGFELVRLRLMGGQTKTLQIMAERPGGGIEVDECAEISN 62 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S LDVE+ + Y LEVSSPGIDRP+ R DF + G+ E +++ G Sbjct: 63 AVSATLDVEDPVSDAYTLEVSSPGIDRPLTRLKDFDTFQGYEAKIETTELIDGRKRFKGV 122 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + G + E E + + FD L A+L++TDEL++ L L Sbjct: 123 LAGVEGGEILINIE--------EGTVGLHFDWLADAKLVLTDELIKEMLKARKDAGQL 172 >gi|163745073|ref|ZP_02152433.1| hypothetical protein OIHEL45_05780 [Oceanibulbus indolifex HEL-45] gi|161381891|gb|EDQ06300.1| hypothetical protein OIHEL45_05780 [Oceanibulbus indolifex HEL-45] Length = 192 Score = 199 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 56/178 (31%), Positives = 94/178 (52%), Gaps = 8/178 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ +I PVIE+M F V++ L+ K+ +LQ+ +R DG + + +C ++SQ Sbjct: 5 LIAKAAIDRRLAEIITPVIEDMGFELVRVRLMSGKSTILQVMADRPDGGIEVDECAKISQ 64 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 AI +LDVE+ I Y LEVSSPGIDRP+ R DF + G+ E +++ G+ Sbjct: 65 AIGAVLDVEDPILDEYALEVSSPGIDRPLTRLKDFDAFEGYEAKIETTELIDGRRRFKGE 124 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + G + E E I + FD L A+L++TD+L++ L + + Sbjct: 125 LAGVEGGEVLINVE--------EGTIGLQFDWLSDAKLLLTDDLIKEMLRQRKASGAI 174 >gi|154254056|ref|YP_001414880.1| hypothetical protein Plav_3625 [Parvibaculum lavamentivorans DS-1] gi|259586173|sp|A7HZ90|RIMP_PARL1 RecName: Full=Ribosome maturation factor rimP gi|154158006|gb|ABS65223.1| protein of unknown function DUF150 [Parvibaculum lavamentivorans DS-1] Length = 207 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 57/180 (31%), Positives = 93/180 (51%), Gaps = 2/180 (1%) Query: 9 SKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRD 68 + + + G+A + ++ E F V++ + LQI ER DG+MT+ D Sbjct: 18 AALDTHLIAPPGVARRVFEQLRAPAEGAGFEIVRVRFGVQDGQTLQIMAERPDGSMTVED 77 Query: 69 CEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 C ELS+ +S +LDVE+ I G Y LE+SS GIDRP+ R DF RW+G V + + Sbjct: 78 CAELSRMLSALLDVEDPIPGEYHLEISSAGIDRPLTRPKDFERWSGFEVKVGLSEPLSGR 137 Query: 129 QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGS 188 ++ G + G + +E + G + + + F L A+L+++D+L+R SL G Sbjct: 138 KRFRGILQGVEDDEVLVECDIEGFSE--PQVLGLPFRQLSEAKLVMSDDLIRESLKRQGP 195 >gi|254462851|ref|ZP_05076267.1| hypothetical protein RB2083_3442 [Rhodobacterales bacterium HTCC2083] gi|206679440|gb|EDZ43927.1| hypothetical protein RB2083_3442 [Rhodobacteraceae bacterium HTCC2083] Length = 193 Score = 198 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 56/178 (31%), Positives = 88/178 (49%), Gaps = 8/178 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ +I PVIE++ F V++ L+ K LQI ER G + + C E+S Sbjct: 5 LIAKAAIDQRLAGIITPVIEDLGFELVRVRLMSGKTTTLQIMAERPTGGIEVDQCAEIST 64 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 AI LDVE+ I Y LEVSSPGIDRP+ R DF + G+ E +++ G+ Sbjct: 65 AIGATLDVEDPIIDEYTLEVSSPGIDRPLTRLKDFATFEGYEAKIETTELIDGRRRFKGQ 124 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + G + E E + ++FD L A+L++TDEL+ L + + Sbjct: 125 LAGVEGNDVLINIE--------EGTVGLNFDWLSDAKLVLTDELITEMLRQRKAAGDI 174 >gi|260429224|ref|ZP_05783201.1| hypothetical protein CSE45_3569 [Citreicella sp. SE45] gi|260419847|gb|EEX13100.1| hypothetical protein CSE45_3569 [Citreicella sp. SE45] Length = 198 Score = 197 bits (503), Expect = 4e-49, Method: Composition-based stats. Identities = 59/176 (33%), Positives = 91/176 (51%), Gaps = 4/176 (2%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ ++ PVIE+M F V+I L+ K LQI ER +G + + +C ++S Sbjct: 4 LIAKSAIDRRLAEIVAPVIEDMGFELVRIRLMGGKTATLQIMAERPEGGIEIDECGDIST 63 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S +LDVE+ I Y LEV SPGIDRP+ R DF + G+ + +++ G Sbjct: 64 AVSAVLDVEDPILDSYVLEVGSPGIDRPLTRLKDFETFEGYDAKIQTDELIDGRKRWQGV 123 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 + G L E+ GE I + FD L A+LI+TDEL+R L + Sbjct: 124 LAGVEGGEVLLNIEENGET----QTIGLQFDWLSDAKLILTDELMREMLRARKARG 175 >gi|75674220|ref|YP_316641.1| hypothetical protein Nwi_0021 [Nitrobacter winogradskyi Nb-255] gi|91207993|sp|Q3SWQ2|RIMP_NITWN RecName: Full=Ribosome maturation factor rimP gi|74419090|gb|ABA03289.1| Protein of unknown function DUF150 [Nitrobacter winogradskyi Nb-255] Length = 260 Score = 197 bits (503), Expect = 5e-49, Method: Composition-based stats. Identities = 62/177 (35%), Positives = 110/177 (62%), Gaps = 1/177 (0%) Query: 11 YEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCE 70 EPR+ + G+A ++++ PV++ M +R V+I + E +QI ER DG++ + DCE Sbjct: 15 DEPRLVVEPGVAARVAAIAAPVLQGMGYRLVRIKVSGEAGCTVQIMAERPDGSIQIEDCE 74 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 +S+A+SP+LDV + I+ YRLE+SSPGIDRP+VR+SDF R+ GH+ E+ ++ +++ Sbjct: 75 AISKALSPVLDVADPIDKAYRLEISSPGIDRPLVRRSDFERYAGHLAKIEMAVAHQGRKR 134 Query: 131 LIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYG 187 G + G + L ++ + +E ++ + + + ARL++TDEL+ S+ Sbjct: 135 FRGVLQGVEDNAVRLHRDD-IRNNDDESEVMLVMEDIADARLVLTDELIAESMRRGK 190 >gi|300024994|ref|YP_003757605.1| hypothetical protein Hden_3493 [Hyphomicrobium denitrificans ATCC 51888] gi|299526815|gb|ADJ25284.1| protein of unknown function DUF150 [Hyphomicrobium denitrificans ATCC 51888] Length = 213 Score = 197 bits (502), Expect = 6e-49, Method: Composition-based stats. Identities = 61/177 (34%), Positives = 107/177 (60%), Gaps = 6/177 (3%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK---NLLLQIFVERDDGNMTLRDCE 70 R + G+A +++++++PV+E++ FR V++ + + ++Q+ ER DG++T+ DCE Sbjct: 20 RFLRETGVAAEVAAIVEPVLEDLGFRLVRVKVQGGGATADKIVQLMAERPDGSITVDDCE 79 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 +S+ +SP+LDV + + G YRLEVSSPGIDRP+VR SDF W+GH E+ + G ++K Sbjct: 80 TISKQVSPVLDVADPVSGAYRLEVSSPGIDRPLVRPSDFEDWSGHEAKIELTEAVGGRRK 139 Query: 131 LIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYG 187 G + G + +E + + + + + ARL++TDEL+R +L Sbjct: 140 FKGMLEGFEDGEVRIEAD---TGEHGIQHLGLPVHLISDARLVLTDELIREALARAK 193 >gi|296448219|ref|ZP_06890115.1| protein of unknown function DUF150 [Methylosinus trichosporium OB3b] gi|296254259|gb|EFH01390.1| protein of unknown function DUF150 [Methylosinus trichosporium OB3b] Length = 251 Score = 197 bits (502), Expect = 6e-49, Method: Composition-based stats. Identities = 69/183 (37%), Positives = 104/183 (56%), Gaps = 3/183 (1%) Query: 11 YEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCE 70 EPR+ G+ G+A I+ + +PV+ ++ +R V+ +L + ++LQI ER DG MT+ DCE Sbjct: 15 DEPRLCGETGVAARIAHIAEPVLAQLGYRLVRARILSQNGVILQIMAERPDGTMTIEDCE 74 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG-DKQ 129 SQA+SP LDVE+ I YRLE+SSPGIDRP+VR SDF R G E+ L ++ Sbjct: 75 AASQALSPELDVEDAIADAYRLELSSPGIDRPLVRVSDFRRAIGQEAKIELTLPLASGRK 134 Query: 130 KLIGKIMGTSETG--FFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYG 187 + G I+ G E++ E + + L A+L++T+ L+R SL Sbjct: 135 RFRGDIIAVEGEGREAVATLERKDAPPDEEKTVRLPLRDLDEAKLMLTEALIRESLRAGK 194 Query: 188 SYA 190 + A Sbjct: 195 ADA 197 >gi|217978444|ref|YP_002362591.1| protein of unknown function DUF150 [Methylocella silvestris BL2] gi|259585790|sp|B8EIB0|RIMP_METSB RecName: Full=Ribosome maturation factor rimP gi|217503820|gb|ACK51229.1| protein of unknown function DUF150 [Methylocella silvestris BL2] Length = 279 Score = 197 bits (502), Expect = 7e-49, Method: Composition-based stats. Identities = 64/179 (35%), Positives = 102/179 (56%), Gaps = 2/179 (1%) Query: 3 STHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDG 62 T EPR+ + G+A I+ + PV+ ++ +R V++ L + + +QI ER DG Sbjct: 8 ETDSAALMAEPRLVAETGVAARIAHIATPVLADLGYRLVRVKLSAQDGMTVQIMAERPDG 67 Query: 63 NMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV 122 MT+ DCE +S A+SP LDVE++++ YRLE+SSPGIDRP+VR SDF R E+ Sbjct: 68 AMTVNDCEAVSAALSPALDVEDVVKQAYRLEISSPGIDRPLVRVSDFRRALDQEARIELR 127 Query: 123 LSSGDKQKLIGKIMGTSETG--FFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELL 179 L +++ G I G + G + E+ K ++ + D L A+L++T+EL+ Sbjct: 128 LGLDGRKRFRGLIKGVTGAGAAAVVTLERVDAKPGEAVEAVLPLDDLAEAKLVLTEELI 186 >gi|121601902|ref|YP_989500.1| hypothetical protein BARBAKC583_1251 [Bartonella bacilliformis KC583] gi|259585726|sp|A1UU47|RIMP_BARBK RecName: Full=Ribosome maturation factor rimP gi|120614079|gb|ABM44680.1| conserved hypothetical protein [Bartonella bacilliformis KC583] Length = 209 Score = 197 bits (501), Expect = 8e-49, Method: Composition-based stats. Identities = 70/188 (37%), Positives = 113/188 (60%), Gaps = 4/188 (2%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 + +T + EPR+F + G+ + +++ P+++ + +R V++ LL L LQI ER Sbjct: 4 INATEIMDDIDEPRLFEEDGVEALVVALVAPLLKPLGYRLVRVKLLGLNGLTLQIMAERA 63 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 DG MT+ DCE +S+ ISP+LDV+N+IE Y LE+SSPGIDRP+VRKSDF W G+ E Sbjct: 64 DGTMTIEDCEIISKTISPLLDVQNVIERKYHLEISSPGIDRPLVRKSDFFHWQGYTAKIE 123 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 ++K G + ++ GF L + E E + +SF ++ +A L++TD+L+R Sbjct: 124 TRTIVNGRRKFRGALENVTQDGFILNIDAAPE----EETVYVSFSNITNAHLVLTDKLIR 179 Query: 181 ASLNNYGS 188 +L + Sbjct: 180 DALKKDKN 187 >gi|254471146|ref|ZP_05084549.1| conserved hypothetical protein [Pseudovibrio sp. JE062] gi|211960288|gb|EEA95485.1| conserved hypothetical protein [Pseudovibrio sp. JE062] Length = 196 Score = 197 bits (501), Expect = 8e-49, Method: Composition-based stats. Identities = 66/171 (38%), Positives = 101/171 (59%), Gaps = 2/171 (1%) Query: 9 SKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRD 68 + +PRI + GL ++ +++PVI ++ +R V+I + LQI ER DG M + D Sbjct: 2 DETDPRIVKEKGLEARVAEIVEPVIVDLGYRLVRIRVNGNNGCTLQIMAERPDGTMAVED 61 Query: 69 CEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 CEE+S A+SP LDV++ I G Y LE+SSPGIDRP+VR DF RW GHVV E+ + + Sbjct: 62 CEEISHAVSPALDVDDPISGAYHLEISSPGIDRPLVRAGDFERWVGHVVKIEMSVPQAGR 121 Query: 129 QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELL 179 ++ G I+G E + ++ + + D + SA L++TDEL+ Sbjct: 122 KRYRGHIIGVEEGNAVIRMTD--VQEGQDEAAHLPLDEIGSAVLVLTDELI 170 >gi|260461983|ref|ZP_05810228.1| protein of unknown function DUF150 [Mesorhizobium opportunistum WSM2075] gi|259032230|gb|EEW33496.1| protein of unknown function DUF150 [Mesorhizobium opportunistum WSM2075] Length = 215 Score = 196 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 76/183 (41%), Positives = 115/183 (62%), Gaps = 2/183 (1%) Query: 7 LHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTL 66 + S+ + RI + G+ I+ +IQPV+ + FR V++ L + L LQI ER+DG MT+ Sbjct: 4 MTSEGDDRIIRESGIDARIALIIQPVLRGIGFRLVRVHLSGQNGLTLQIMAEREDGTMTV 63 Query: 67 RDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 DCEE+S+A+SP LDV++ IE Y LEVSSPGIDRP+VRKSDF+ W GH+V E + Sbjct: 64 EDCEEVSRAVSPALDVDDPIEKAYHLEVSSPGIDRPLVRKSDFVTWTGHLVKMETSVVVA 123 Query: 127 DKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNY 186 D+++ GKI E +E++K E + + +D++ RLI+TD+L+R +L+ Sbjct: 124 DRKRFKGKIAEAGENDVLIERDKAAY--GEEPTVRVPYDAISETRLILTDDLIRDALSKD 181 Query: 187 GSY 189 Sbjct: 182 NRA 184 >gi|83942069|ref|ZP_00954531.1| hypothetical protein EE36_07533 [Sulfitobacter sp. EE-36] gi|83953119|ref|ZP_00961841.1| hypothetical protein NAS141_12461 [Sulfitobacter sp. NAS-14.1] gi|83842087|gb|EAP81255.1| hypothetical protein NAS141_12461 [Sulfitobacter sp. NAS-14.1] gi|83847889|gb|EAP85764.1| hypothetical protein EE36_07533 [Sulfitobacter sp. EE-36] Length = 192 Score = 196 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 54/178 (30%), Positives = 93/178 (52%), Gaps = 8/178 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ +I PVIE+M F V++ L+ K+ LQ+ +R DG + + + +SQ Sbjct: 5 LIAKAAIDRRMAEIITPVIEDMGFELVRVRLMSGKSTTLQVMADRPDGGIEVDELALISQ 64 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 +IS ++DVE+ I Y LEVSSPGIDRP+ R DF + G+ E +++ G+ Sbjct: 65 SISAVMDVEDPILDEYTLEVSSPGIDRPLTRLKDFEMFEGYEAKIETGELIDGRRRFKGE 124 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + G + + E E I + FD L A+L++TD+L++ L + + Sbjct: 125 LAGVEDDEVLINVE--------EGTIGLKFDWLTDAKLVLTDDLIKEMLRQRKASGAI 174 >gi|114705361|ref|ZP_01438269.1| hypothetical protein FP2506_10491 [Fulvimarina pelagi HTCC2506] gi|114540146|gb|EAU43266.1| hypothetical protein FP2506_10491 [Fulvimarina pelagi HTCC2506] Length = 202 Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats. Identities = 65/181 (35%), Positives = 106/181 (58%), Gaps = 2/181 (1%) Query: 9 SKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRD 68 ++ E RI + GL I+S+++P IE+ +R V++ + +QI ER DG M + Sbjct: 2 TEKETRIVTEDGLEAKIASIVEPAIEQTGYRLVRVRVSGMNGKTVQIMAERPDGTMDVEG 61 Query: 69 CEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 CEE+S+AISP+L+ E+ ++G Y LE+SSPGIDRP+VR SDF W G ++ E D+ Sbjct: 62 CEEVSRAISPVLETEDPVDGAYHLELSSPGIDRPLVRVSDFETWAGFLMKLETSRLVADR 121 Query: 129 QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGS 188 ++ GKI+ +E+++ + I D++ ARL++TD+L+ ASL + Sbjct: 122 KRYRGKIVKVENGTITIERDQPAY--GEPASVEIPLDAVADARLVLTDDLIEASLKADKA 179 Query: 189 Y 189 Sbjct: 180 R 180 >gi|161170253|gb|ABX59223.1| uncharacterized protein conserved in bacteria [uncultured marine bacterium EB000_55B11] gi|297183782|gb|ADI19905.1| hypothetical protein [uncultured marine bacterium EB000_55B11] Length = 222 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 58/172 (33%), Positives = 93/172 (54%), Gaps = 8/172 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++S++QPVIE++ + V+I L+ K LQI ++ +G + + DC ++S Sbjct: 43 LIAKSAIDKRMASIVQPVIEDLGYELVRIRLMSGKATTLQIMADKPNGGIDVNDCSKIST 102 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 IS ILDVE+ IE Y LEVSSPG+DRP+ R DF WNG + E +++ G Sbjct: 103 EISAILDVEDPIEAEYALEVSSPGMDRPLTRLKDFQTWNGFEIKVETSELIDGQRRFKGL 162 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNY 186 G + +E + + I + F+ L A+L++TDEL+ AS Sbjct: 163 SRGIEDNDVLIE--------IPQGTIGLDFEWLSDAKLVLTDELVAASQKGR 206 >gi|13474626|ref|NP_106195.1| hypothetical protein mlr5550 [Mesorhizobium loti MAFF303099] gi|34223133|sp|Q98BJ1|RIMP_RHILO RecName: Full=Ribosome maturation factor rimP gi|14025380|dbj|BAB51981.1| mlr5550 [Mesorhizobium loti MAFF303099] Length = 215 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 75/182 (41%), Positives = 114/182 (62%), Gaps = 2/182 (1%) Query: 8 HSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLR 67 S+ + RI + G+ I+ ++QPV+ + FR V++ L + L LQI ER+DG MT+ Sbjct: 5 ASEGDDRIIRESGIDARIALIVQPVLRGIGFRLVRVHLSGQNGLTLQIMAEREDGTMTVE 64 Query: 68 DCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD 127 DCEE+S+A+SP LDV++ IE Y LEVSSPGIDRP+VRKSDF+ W GH+V E + D Sbjct: 65 DCEEVSRAVSPALDVDDPIEKAYHLEVSSPGIDRPLVRKSDFVTWTGHLVKMETSVIVAD 124 Query: 128 KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYG 187 +++ GKI E +E++K E + + +D++ RLI+TD+L+R +L+ Sbjct: 125 RKRFKGKIAEAGENDVLIERDKAAY--GEEPTVRVPYDAIAETRLILTDDLIRDALSKDN 182 Query: 188 SY 189 Sbjct: 183 RA 184 >gi|258543557|ref|YP_003188990.1| hypothetical protein APA01_25050 [Acetobacter pasteurianus IFO 3283-01] gi|256634635|dbj|BAI00611.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01] gi|256637691|dbj|BAI03660.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-03] gi|256640745|dbj|BAI06707.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-07] gi|256643800|dbj|BAI09755.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-22] gi|256646855|dbj|BAI12803.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-26] gi|256649908|dbj|BAI15849.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-32] gi|256652898|dbj|BAI18832.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655952|dbj|BAI21879.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-12] Length = 201 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 58/178 (32%), Positives = 100/178 (56%), Gaps = 8/178 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-MTLRDCEELS 73 + GL ++++I P +E+M + V++++L + +QI +R DG+ + + DCE +S Sbjct: 14 LSTHSGLEARVAALIAPAVEDMGYEIVRVAVLGRERPTVQIMADRKDGSLINVEDCERIS 73 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 A+ +LDVE+ I G + LEVSS GIDRP+ R D+ R+ GH V E++L +++ G Sbjct: 74 HAVGAVLDVEDPIPGAWTLEVSSAGIDRPLTRAKDWNRFAGHQVKAEVLLPVNGRRRFSG 133 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAG 191 ++G+ T + + E +A+ + L ARL++TD L+ AS S G Sbjct: 134 TVLGSDGTVARMRLDDGTE-------VALPLEELRRARLVLTDALIEASARMVQSAPG 184 >gi|83950735|ref|ZP_00959468.1| hypothetical protein ISM_06535 [Roseovarius nubinhibens ISM] gi|83838634|gb|EAP77930.1| hypothetical protein ISM_06535 [Roseovarius nubinhibens ISM] Length = 190 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 55/178 (30%), Positives = 88/178 (49%), Gaps = 8/178 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ ++ PVIE++ F V++ L+ K LQI ER +G + + +C +S Sbjct: 5 LIAKAAIDRRLAEIVTPVIEDLGFELVRLRLMGGKTDTLQIMAERPEGGIEVDECARIST 64 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 +S +LDVE+ I Y LEVSSPGIDRP+ R DF + G+ E +++ G Sbjct: 65 EVSAVLDVEDPIIEAYTLEVSSPGIDRPLTRLKDFETFEGYEAKIETSELIDGRKRFKGV 124 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + G + E E I + FD L A+L++TDEL++ L L Sbjct: 125 LAGVEGEEVLINVE--------EGTIGLQFDWLADAKLVLTDELIKEMLRQRKDAGVL 174 >gi|114762089|ref|ZP_01441557.1| hypothetical protein 1100011001331_R2601_14160 [Pelagibaca bermudensis HTCC2601] gi|114545113|gb|EAU48116.1| hypothetical protein R2601_14160 [Roseovarius sp. HTCC2601] Length = 195 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 57/174 (32%), Positives = 91/174 (52%), Gaps = 3/174 (1%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ ++ PVIE++ F V++ L+ K LQI ER +G + + +C ++S Sbjct: 4 LIAKSAIDRRLAEIVTPVIEDLGFELVRLRLMSGKTATLQIMAERPEGGIEVDECADIST 63 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S +LDVE+ I Y LEVSSPGIDRP+ R DF + G+ E +++ G Sbjct: 64 AVSAVLDVEDPIIDAYALEVSSPGIDRPLTRLKDFDTYEGYEAKIETQEMIDGRKRWRGV 123 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGS 188 + G + E G E I + FD L A+LI+TD+L+R L + Sbjct: 124 LAGIEGSEVLFNIEGEG---GEEQTIGLQFDWLSDAKLILTDDLIRDMLRARKA 174 >gi|319779772|ref|YP_004139248.1| hypothetical protein Mesci_0023 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317165660|gb|ADV09198.1| protein of unknown function DUF150 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 214 Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats. Identities = 75/182 (41%), Positives = 113/182 (62%), Gaps = 2/182 (1%) Query: 8 HSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLR 67 S+ + RI + G+ I+ ++QPV+ + FR V++ L + L LQI ER+DG MT+ Sbjct: 5 ASEGDDRIIRESGIDARIALIVQPVLRGIGFRLVRVHLSGQNGLTLQIMAEREDGTMTVE 64 Query: 68 DCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD 127 DCEE+S+A+SP LDV++ IE Y LEVSSPGIDRP+VRKSDF W GH+V E + D Sbjct: 65 DCEEVSRAVSPALDVDDPIEKAYHLEVSSPGIDRPLVRKSDFTTWTGHLVKMETSIVVAD 124 Query: 128 KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYG 187 +++ GKI E +E++K E + + +D++ RLI+TD+L+R +L+ Sbjct: 125 RKRFKGKIAEAGEDDVLIERDKAAY--GEEPTVRVPYDAIADVRLILTDDLIRDALSKDN 182 Query: 188 SY 189 Sbjct: 183 RA 184 >gi|317046739|ref|YP_004114387.1| hypothetical protein Pat9b_0506 [Pantoea sp. At-9b] gi|316948356|gb|ADU67831.1| protein of unknown function DUF150 [Pantoea sp. At-9b] Length = 202 Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 76/158 (48%), Gaps = 9/158 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ +I +E + + V I + + L+I+++ ++G + + DC ++S Sbjct: 51 VGLSTLEQKLTELISAPVEALGYELVGIEFIRGRTSTLRIYIDSEEG-INVDDCADVSHQ 109 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S ++DVE+ I Y LEVSSPG+DRP+ + R+ G V + ++ +++K G I Sbjct: 110 VSAVMDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFAGEEVGLVLRMAVQNRRKWQGII 169 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E + E + ++ A L+ Sbjct: 170 KSVEGEMITVTVEGKDEV--------FALSNIQKANLV 199 >gi|304392763|ref|ZP_07374703.1| conserved hypothetical protein [Ahrensia sp. R2A130] gi|303295393|gb|EFL89753.1| conserved hypothetical protein [Ahrensia sp. R2A130] Length = 213 Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats. Identities = 63/181 (34%), Positives = 107/181 (59%), Gaps = 2/181 (1%) Query: 8 HSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLR 67 + + + R+ + GL ++SVI PVIE++ +R V++ +++ L +QIF ER DG M++ Sbjct: 20 NDRADARLVKEEGLDAKVASVIAPVIEDLGYRLVRVRMVDHNGLTMQIFAERPDGTMSVG 79 Query: 68 DCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD 127 +CE +S+A+SP+LDVE+ + Y LEV SPGIDRP+VR+SDF W GH E Sbjct: 80 ECEIISKALSPVLDVEDPVTQAYNLEVGSPGIDRPLVRRSDFETWTGHTAKIETAYLVDG 139 Query: 128 KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYG 187 +++ GK++ L ++ + + + ++ SA L++TD+L+R +L Sbjct: 140 RKRFRGKLVAVDGEIVKLRRDNAASGEDKDADV--PLHAIASASLVLTDDLIREALKRDK 197 Query: 188 S 188 S Sbjct: 198 S 198 >gi|329113269|ref|ZP_08242052.1| Ribosome maturation factor RimP [Acetobacter pomorum DM001] gi|326697410|gb|EGE49068.1| Ribosome maturation factor RimP [Acetobacter pomorum DM001] Length = 201 Score = 194 bits (495), Expect = 4e-48, Method: Composition-based stats. Identities = 56/178 (31%), Positives = 98/178 (55%), Gaps = 8/178 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-MTLRDCEELS 73 + GL ++++I P +E+M + V++++L + +QI +R DG+ + + DCE +S Sbjct: 14 LSTHSGLEARVAALIAPAVEDMGYEIVRVAVLGRERPTVQIMADRKDGSLINVEDCERIS 73 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 A+ +LDVE+ I G + LEVSS GIDRP+ R D+ R+ GH E++L +++ G Sbjct: 74 HAVGAVLDVEDPIPGAWTLEVSSAGIDRPLTRAKDWNRFAGHQAKAEVLLPVNGRRRFSG 133 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAG 191 ++G+ T + + E +A+ + L ARL++TD L+ AS G Sbjct: 134 VVLGSDGTVARMRLDDGTE-------VALPLEELRRARLVLTDALIEASARMVQPAPG 184 >gi|254707322|ref|ZP_05169150.1| hypothetical protein BpinM_10195 [Brucella pinnipedialis M163/99/10] gi|261314804|ref|ZP_05954001.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261303830|gb|EEY07327.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] Length = 192 Score = 194 bits (495), Expect = 4e-48, Method: Composition-based stats. Identities = 65/165 (39%), Positives = 98/165 (59%), Gaps = 2/165 (1%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++++PVI + FR V++ L LQI ER DG MT+ DCE +S+ ++P+LDVE Sbjct: 3 KWQALLEPVINTLGFRLVRVRLSGLNGQTLQIMAERPDGTMTVDDCELVSRTVAPVLDVE 62 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I G Y LE+SSPGIDRP+VRKSDF W GH+ E + ++K G+I+ Sbjct: 63 DPISGKYHLEISSPGIDRPLVRKSDFSDWAGHIAKVETSIVHEGRKKFRGRIVVGEADSV 122 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGS 188 +E ++ NE + I FD + ARL++TD+L+R +L + Sbjct: 123 TIESDQISY--GNEPVVRIPFDLISDARLVLTDDLIRDALRKDKA 165 >gi|188532502|ref|YP_001906299.1| YhbC-like protein [Erwinia tasmaniensis Et1/99] gi|188027544|emb|CAO95391.1| YhbC-like protein [Erwinia tasmaniensis Et1/99] Length = 192 Score = 194 bits (494), Expect = 5e-48, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 76/158 (48%), Gaps = 9/158 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ +I +E + + V I + + L+I+++ +DG + + DC ++S Sbjct: 41 VGLSTLEQKLTELISAPVEALGYELVGIEFVRGRTSTLRIYIDSEDG-INVDDCADVSHQ 99 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S ++DVE+ I Y LEVSSPG+DRPM + R+ G V+ + ++ +++K G I Sbjct: 100 VSAVMDVEDPITVAYNLEVSSPGLDRPMFTAEHYARFTGEEVSLVLRMAVQNRRKWQGII 159 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E E + ++ A L+ Sbjct: 160 KSVEGEMITVAVEGNDEV--------FALSNIQKANLV 189 >gi|209544213|ref|YP_002276442.1| hypothetical protein Gdia_2067 [Gluconacetobacter diazotrophicus PAl 5] gi|259585817|sp|A9HF10|RIMP_GLUDA RecName: Full=Ribosome maturation factor rimP gi|209531890|gb|ACI51827.1| protein of unknown function DUF150 [Gluconacetobacter diazotrophicus PAl 5] Length = 207 Score = 194 bits (493), Expect = 6e-48, Method: Composition-based stats. Identities = 55/174 (31%), Positives = 99/174 (56%), Gaps = 8/174 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-MTLRDCEELSQAIS 77 GL +++++ PV+ +M F V++++L ++ +QI +R DG + + DCE++S A+ Sbjct: 9 TGLDAKVAAIVAPVLADMGFELVRVAILGRESPTVQIMADRADGTLIAIEDCEQISHAVG 68 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ + G + LEVSS GIDRP+ R D+ R+ GH+ E+ + +++ G ++G Sbjct: 69 AVLDVEDPLPGAWTLEVSSAGIDRPLTRAKDWTRFAGHLAKAEVNIPIDGRKRFSGILLG 128 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAG 191 + L E E +A+ + ARL++TDEL+ AS + + G Sbjct: 129 AEDGFGRLRLEDGTE-------VALPLSDMRRARLVLTDELIAASAHMMRAPGG 175 >gi|255264773|ref|ZP_05344115.1| hypothetical protein TR2A62_2551 [Thalassiobium sp. R2A62] gi|255107108|gb|EET49782.1| hypothetical protein TR2A62_2551 [Thalassiobium sp. R2A62] Length = 190 Score = 194 bits (493), Expect = 6e-48, Method: Composition-based stats. Identities = 60/176 (34%), Positives = 93/176 (52%), Gaps = 8/176 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + I+ +IQP++E M + V+I L+ K LQI ++ DG + + DC E+S Sbjct: 4 LVAKAAIDRRIAEIIQPMMESMGYELVRIRLMSGKATTLQIMAQKPDGTIEVDDCAEIST 63 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S +LDVE+ I Y LEVSSPGIDRP+ R DF +W G+ E +++ G+ Sbjct: 64 AVSALLDVEDPILDAYELEVSSPGIDRPLTRVKDFAQWEGYEAKIETDELIDGRRRFKGQ 123 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 + GT +E E E I + F+ L A+L++TD+L+R L Sbjct: 124 LAGTEGDEILIEIE--------EGTIGLKFEWLSDAKLVLTDDLIRDVLRGRKDAG 171 >gi|146337224|ref|YP_001202272.1| hypothetical protein BRADO0050 [Bradyrhizobium sp. ORS278] gi|259585732|sp|A4YJE6|RIMP_BRASO RecName: Full=Ribosome maturation factor rimP gi|146190030|emb|CAL74022.1| conserved hypothetical protein; putative YhbC-like protein [Bradyrhizobium sp. ORS278] Length = 233 Score = 194 bits (493), Expect = 7e-48, Method: Composition-based stats. Identities = 55/159 (34%), Positives = 96/159 (60%), Gaps = 2/159 (1%) Query: 31 PVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHY 90 PV++ M +R V+I + E +Q+ ER DG M + DCE +S+A+SP+LD+ + I+ Y Sbjct: 15 PVLQGMGYRLVRIRISGESGCTVQVMAERPDGTMQIEDCEAVSRALSPVLDIADPIDRAY 74 Query: 91 RLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKR 150 RLE+SSPGIDRP+VR+SDF R GH+V E+ ++ ++++ G I G G + ++ Sbjct: 75 RLEISSPGIDRPLVRRSDFERHVGHLVKIEMAVAYQNRKRFRGIIKGVEGDGVRITRDDV 134 Query: 151 GEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSY 189 + + + + + A++++TDEL+ S+ + Sbjct: 135 AKD--ADPDVVLPMADIGDAKMVLTDELIAESMRRGKAA 171 >gi|126728007|ref|ZP_01743823.1| hypothetical protein SSE37_18492 [Sagittula stellata E-37] gi|126710972|gb|EBA10022.1| hypothetical protein SSE37_18492 [Sagittula stellata E-37] Length = 189 Score = 193 bits (492), Expect = 8e-48, Method: Composition-based stats. Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 8/176 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + G+ ++ ++ PVIE+M F V++ L LLQI ER +G + + +C E+S Sbjct: 4 MIAKTGMDLRLAEIVAPVIEDMGFELVRLRLQSGNTPLLQIMAERPEGGIEVDECAEIST 63 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S +LDVE+ I Y LEVSSPGIDRP+ R DF + G+ E +++ G Sbjct: 64 AVSAVLDVEDPIVEAYTLEVSSPGIDRPLTRLKDFDTYEGYEARLETTDLIEGRKRFRGI 123 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 + G + + ++E I + FD L A+L++TDEL+R L + A Sbjct: 124 LAGVEGSEVLIN--------VDEGTIGLQFDWLADAKLVMTDELVREMLKARKTAA 171 >gi|27362892|gb|AAN86998.1| YhbC-like protein [Pectobacterium carotovorum subsp. carotovorum] Length = 191 Score = 193 bits (492), Expect = 9e-48, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 77/153 (50%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I + + + V I + + L+I+++ +DG +T+ DC ++S +S +L Sbjct: 45 LEQKLTEMISAPVAALGYELVGIEFIRSRQSTLRIYIDSEDG-ITVDDCADVSHQVSAVL 103 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG++RP+ + +L + G V + ++ +++K +G I Sbjct: 104 DVEDPITVAYNLEVSSPGLERPLFTAAHYLHFVGEEVTVVLRMAVQNRRKWLGVIKAVDG 163 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E + E + ++ A L+ Sbjct: 164 EMITITVEGKDEV--------FALSNIQKANLV 188 >gi|288959697|ref|YP_003450038.1| hypothetical protein AZL_028560 [Azospirillum sp. B510] gi|288912005|dbj|BAI73494.1| hypothetical protein AZL_028560 [Azospirillum sp. B510] Length = 166 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 58/172 (33%), Positives = 95/172 (55%), Gaps = 9/172 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDG-NMTLRDCEELSQAIS 77 M G I +I P +E M + V++ + + +LQI ER DG MT+ DC ++S+++S Sbjct: 1 MDATGRIEQIITPSVEAMGYEVVRVQISGGQRAVLQIMAERADGAPMTVEDCADISRSVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I Y LEVSSPGIDRP+ R DF R+ G E ++ +++ G + G Sbjct: 61 ALLDVEDPIREAYTLEVSSPGIDRPLTRLKDFERFAGFEARLESRMAIDGRKRFKGMLKG 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSY 189 + ++ E+ + + FD++L A+L++TD+L+RAS Sbjct: 121 VEDGLVCIDTEQGAAR--------LEFDNILRAKLVLTDDLIRASQEQQDGP 164 >gi|253686984|ref|YP_003016174.1| hypothetical protein PC1_0583 [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753562|gb|ACT11638.1| protein of unknown function DUF150 [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 191 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 77/153 (50%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I + + + V I + + L+I+++ +DG +T+ DC ++S +S +L Sbjct: 45 LEQKLTEMISAPVAALGYELVGIEFIRSRQSTLRIYIDSEDG-ITVDDCADVSHQVSAVL 103 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG++RP+ + +L + G V + ++ +++K +G I Sbjct: 104 DVEDPITVAYNLEVSSPGLERPLFTAAHYLHFVGEEVTVVLRMAVQNRRKWLGVIKAVDG 163 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E + E + ++ A L+ Sbjct: 164 EMITITVEGKDEV--------FALSNIQKANLV 188 >gi|84684620|ref|ZP_01012521.1| hypothetical protein 1099457000260_RB2654_13384 [Maritimibacter alkaliphilus HTCC2654] gi|84667599|gb|EAQ14068.1| hypothetical protein RB2654_13384 [Rhodobacterales bacterium HTCC2654] Length = 194 Score = 192 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 56/176 (31%), Positives = 93/176 (52%), Gaps = 4/176 (2%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ +++PVIE+M + V++ L LQI ++ +G + + D ++ Sbjct: 4 LVARTAIDRRLADIVRPVIEDMGYELVRLRLQGGNTQTLQIMADKPEGGIEVDDLSAINT 63 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+ LDVE+ IEG Y LEVSSPGIDRP+ R DF W+G + E +++ G Sbjct: 64 ALGATLDVEDPIEGEYNLEVSSPGIDRPLTRYKDFDTWDGWIAKVETSELIEGRKRFKGT 123 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 + GT + +E E +GE + I ++FD L A+L++TDEL+ L Sbjct: 124 LQGTEDGEILIEIEDKGE----PVTIGLTFDLLADAKLVLTDELIAEMLKQRKDAG 175 >gi|300718579|ref|YP_003743382.1| hypothetical protein [Erwinia billingiae Eb661] gi|299064415|emb|CAX61535.1| Conserved uncharacterized protein [Erwinia billingiae Eb661] Length = 195 Score = 192 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 75/153 (49%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I +E + + V I + + L+I+++ ++G + + DC ++S +S + Sbjct: 49 LEQKLTELITAPVEALGYELVGIEFVRGRTSTLRIYIDSENG-INVDDCADVSHQVSAVF 107 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG++RP+ + + ++ G V+ + ++ +++K G I Sbjct: 108 DVEDPITVAYNLEVSSPGLERPLFTAAHYAQFIGEEVSLVLRMAVQNRRKWQGIIKSVEG 167 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E E + ++ A L+ Sbjct: 168 EMITVAVEGNDEV--------FALSNIQKANLV 192 >gi|330991198|ref|ZP_08315150.1| Ribosome maturation factor rimP [Gluconacetobacter sp. SXCC-1] gi|329761691|gb|EGG78183.1| Ribosome maturation factor rimP [Gluconacetobacter sp. SXCC-1] Length = 227 Score = 192 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 57/191 (29%), Positives = 101/191 (52%), Gaps = 11/191 (5%) Query: 2 ESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDD 61 + F P + GL I++++ P + +M F V++++L ++ +QI +R D Sbjct: 6 RAAFFALDADLPFL---TGLDARIAAMVAPALADMGFDLVRVAVLGRESPTVQIMADRAD 62 Query: 62 GN-MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 G + + DCE++S A+ ILDVE+ + G + LEVSS GIDRP+ R D+ R+ GH+ E Sbjct: 63 GTLIAIEDCEQISHAVGAILDVEDPLPGAWTLEVSSAGIDRPLTRAKDWERFAGHLARAE 122 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 + + +++ G ++G + + + E +A+ F + ARL++TDEL+ Sbjct: 123 MNMPIEGRKRFAGIVLGARDGHGLMRLDDGTE-------VALPFAEMRKARLVLTDELIE 175 Query: 181 ASLNNYGSYAG 191 AS A Sbjct: 176 ASARMMRPAAS 186 >gi|83313173|ref|YP_423437.1| hypothetical protein amb4074 [Magnetospirillum magneticum AMB-1] gi|123540593|sp|Q2VZU7|RIMP_MAGSA RecName: Full=Ribosome maturation factor rimP gi|82948014|dbj|BAE52878.1| Uncharacterized protein conserved in bacteria [Magnetospirillum magneticum AMB-1] Length = 166 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 58/170 (34%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDG-NMTLRDCEELSQAIS 77 M L + ++I P ++ M + V++ L ++ L LQI +R DG M + DC ++S+++S Sbjct: 1 MDLQSRLEALIAPSLDAMGYELVRVQLQGKQRLTLQIMADRKDGVMMAVDDCADISRSVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I Y LEVSSPGIDRP+ R DF+ W G E +++ GK++G Sbjct: 61 ALLDVEDPISAAYTLEVSSPGIDRPLTRAKDFVAWAGFEAKMESCQPIDGRKRFRGKLLG 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYG 187 E G + +IAI + A+L++TDEL+ A+L + Sbjct: 121 LDEAGVNVRL-----VIEAAGEIAIPLADVRGAKLVLTDELIAATLKDQE 165 >gi|260576185|ref|ZP_05844178.1| protein of unknown function DUF150 [Rhodobacter sp. SW2] gi|259021665|gb|EEW24968.1| protein of unknown function DUF150 [Rhodobacter sp. SW2] Length = 199 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 59/176 (33%), Positives = 90/176 (51%), Gaps = 8/176 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ ++ P IE + F V+I L+ K LQI ER DG + + +C +S Sbjct: 4 LIAKTAIDRRLAEIVTPAIEGLGFELVRIRLMGGKVRTLQIMAERPDGGIVVDECAAIST 63 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S ILDVE+ +E +Y LEVSSPGIDRP+ R DF W G+ E +++ G+ Sbjct: 64 AVSAILDVEDPVEENYILEVSSPGIDRPLTRLKDFDTWQGYEARIETTELIDGRRRFKGE 123 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 + G +E E E I + FD L A+L++TDEL+ L + Sbjct: 124 LRGIQGDEVLIEIE--------EGIIGLQFDWLSDAKLVLTDELIAEMLRQRKASG 171 >gi|84514879|ref|ZP_01002242.1| hypothetical protein SKA53_11683 [Loktanella vestfoldensis SKA53] gi|84511038|gb|EAQ07492.1| hypothetical protein SKA53_11683 [Loktanella vestfoldensis SKA53] Length = 191 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 60/178 (33%), Positives = 92/178 (51%), Gaps = 8/178 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + I+ +I PVIE+M F V++ L+ K LQI V+R DG + + C ++S Sbjct: 4 LIAKAAVDRRIAEIITPVIEDMGFEVVRVRLMTGKESTLQIMVQRPDGTIEVDQCAQIST 63 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 AIS +LDVE+ I Y LEVSSPGIDRP+ R DF +W G E +++ G+ Sbjct: 64 AISAVLDVEDPIVDVYTLEVSSPGIDRPLTRLKDFDQWKGFEAKIETEELIDGRRRFKGE 123 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + G + D++E I + F L A+L++TD+L+R L + Sbjct: 124 LAGIDGDEVLI--------DIDEGTIGLKFAWLSDAKLVLTDDLIRDVLRGRKDAGQI 173 >gi|254038336|ref|ZP_04872394.1| conserved hypothetical protein [Escherichia sp. 1_1_43] gi|293449506|ref|ZP_06663927.1| hypothetical protein ECCG_02538 [Escherichia coli B088] gi|226839960|gb|EEH71981.1| conserved hypothetical protein [Escherichia sp. 1_1_43] gi|291322596|gb|EFE62025.1| hypothetical protein ECCG_02538 [Escherichia coli B088] Length = 163 Score = 191 bits (487), Expect = 3e-47, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 9/158 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ +I +E + F V I + + L+I+++ +DG + + DC ++S Sbjct: 12 VGLSTLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQ 70 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LEVSSPG+DRP+ + R+ G V + ++ +++K G I Sbjct: 71 VSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 130 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E + E + ++ A L+ Sbjct: 131 KAVDGEMITVTVEGKDEV--------FALSNIQKANLV 160 >gi|23016101|ref|ZP_00055861.1| COG0779: Uncharacterized protein conserved in bacteria [Magnetospirillum magnetotacticum MS-1] Length = 165 Score = 191 bits (487), Expect = 3e-47, Method: Composition-based stats. Identities = 56/170 (32%), Positives = 94/170 (55%), Gaps = 7/170 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDG-NMTLRDCEELSQAIS 77 M L + ++I P ++ M + V++ L ++ L LQI +R DG M + DC ++S+++S Sbjct: 1 MDLQSRLEALIAPSLDAMGYELVRVQLQGKQRLTLQIMADRKDGVMMAVDDCADISRSVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I Y LEVSSPGIDRP+ R DF W G E +++ GK++G Sbjct: 61 ALLDVEDPISAAYTLEVSSPGIDRPLTRAKDFAAWAGFEAKMESCQPIDGRKRFRGKLLG 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYG 187 ETG + + +++I + A+L++TDEL+ A++ + Sbjct: 121 LDETGAHV------RLAVETGEVSIPLADVRGAKLVLTDELIAATVKDQE 164 >gi|254450327|ref|ZP_05063764.1| hypothetical protein OA238_928 [Octadecabacter antarcticus 238] gi|198264733|gb|EDY89003.1| hypothetical protein OA238_928 [Octadecabacter antarcticus 238] Length = 209 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 57/178 (32%), Positives = 98/178 (55%), Gaps = 4/178 (2%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + I+ +I P +E++ F V++ L+ K +LQI +R DG + + DC E+S Sbjct: 16 LIARAAMDRRITEIITPTVEDLGFEVVRVRLMTGKESILQIMAQRPDGTIEVDDCGEIST 75 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S +LDVE+ I+ + LEVSSPGIDRP+ R DF++W+G+ E +++ G Sbjct: 76 AVSALLDVEDPIKDVFTLEVSSPGIDRPLTRFKDFVQWDGNEAKIETEELIDGRRRFKGM 135 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + G +E E +GE + I + F+ L A+L++T++L+R L + Sbjct: 136 LRGVEGDEVLIEIEDKGE----PVTIGLKFEWLTDAKLVLTEDLIRGVLRGRKDAGQI 189 >gi|293393155|ref|ZP_06637470.1| conserved hypothetical protein [Serratia odorifera DSM 4582] gi|291424301|gb|EFE97515.1| conserved hypothetical protein [Serratia odorifera DSM 4582] Length = 187 Score = 191 bits (485), Expect = 6e-47, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 77/158 (48%), Gaps = 9/158 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ ++ +E + F V I + + L+I+++ ++G + + DC ++S Sbjct: 36 VGLSTLEQKLTEMLSAPVEALGFELVGIEFIRARQSTLRIYIDSENG-INVDDCADVSHQ 94 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ + Y LEVSSPG+DRPM + R+ G V+ + ++ +++K G I Sbjct: 95 VSAVLDVEDPVTVAYNLEVSSPGLDRPMFTAEHYTRFLGEEVSLVLRMAVQNRRKWQGII 154 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + E + ++ A L+ Sbjct: 155 KSVEGEMITVTVDGKDEV--------FALSNIQKANLV 184 >gi|237730090|ref|ZP_04560571.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226908696|gb|EEH94614.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 163 Score = 191 bits (485), Expect = 6e-47, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 77/158 (48%), Gaps = 9/158 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ +I +E + + V I + + L+I+++ +DG + + DC ++S Sbjct: 12 VGLSTLEQKLTEMITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQ 70 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S ++DVE+ I Y LEVSSPG+DRP+ ++R+ G V + ++ +++K G I Sbjct: 71 VSAVMDVEDPITVAYNLEVSSPGLDRPLFTAEHYVRFLGEEVTLVLRMAVQNRRKWQGVI 130 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E + E + ++ A L+ Sbjct: 131 KAVDGEMITVTVEGKDEV--------FALSNIQKANLV 160 >gi|144897847|emb|CAM74711.1| protein conserved in bacteria [Magnetospirillum gryphiswaldense MSR-1] Length = 171 Score = 191 bits (485), Expect = 6e-47, Method: Composition-based stats. Identities = 57/173 (32%), Positives = 94/173 (54%), Gaps = 9/173 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDG-NMTLRDCEELSQAIS 77 M L + ++ P +E M + V++ + LQ+ ER DG NMT+ DC ++S+++S Sbjct: 1 MDLQQRLEALFAPTLEAMGYEMVRVMFQGRSHPTLQVMAERKDGRNMTVDDCADISRSLS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I+ Y LEVSSPGIDRP+ R DF+ W G V E ++ +++ GK++G Sbjct: 61 ALLDVEDPIQSAYALEVSSPGIDRPLTRAKDFITWAGFEVKLEALVGVDGRKRFRGKLLG 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 L + ++++ L SA+L++TDEL+ A + A Sbjct: 121 LEGEAVRLFADG--------AEVSVPLTDLKSAKLVLTDELIAAVTRDEDPQA 165 >gi|115522228|ref|YP_779139.1| hypothetical protein RPE_0199 [Rhodopseudomonas palustris BisA53] gi|122298064|sp|Q07V75|RIMP_RHOP5 RecName: Full=Ribosome maturation factor rimP gi|115516175|gb|ABJ04159.1| protein of unknown function DUF150 [Rhodopseudomonas palustris BisA53] Length = 272 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 67/185 (36%), Positives = 107/185 (57%), Gaps = 2/185 (1%) Query: 3 STHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDG 62 L EPR+ + G+A +++V PV+ M +R V+I + E +QI ER DG Sbjct: 19 PAELLELLSEPRLVVEPGVAARVAAVAGPVLHGMGYRLVRIKVSGELGCTVQIMAERPDG 78 Query: 63 NMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV 122 M + DCE +S+A+SP+LDV + I+ YRLEVSSPGIDRP+VR+SDF R+ G++V ++ Sbjct: 79 TMLIEDCEAISKALSPVLDVADPIDKAYRLEVSSPGIDRPLVRRSDFERYAGYLVKIDMA 138 Query: 123 LSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS 182 + +++ G + G L++E D + + I + + ARL++TDEL+ S Sbjct: 139 VPHQGRKRFRGILGGIEGDAVHLQREGVRGDDDPAVLLTI--EDISDARLVLTDELIAES 196 Query: 183 LNNYG 187 + Sbjct: 197 MRRGK 201 >gi|91212592|ref|YP_542578.1| hypothetical protein UTI89_C3601 [Escherichia coli UTI89] gi|170680823|ref|YP_001745444.1| hypothetical protein EcSMS35_3466 [Escherichia coli SMS-3-5] gi|187775784|ref|ZP_02798170.2| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196] gi|188024835|ref|ZP_02774257.2| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113] gi|189010333|ref|ZP_02806320.2| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076] gi|189401946|ref|ZP_02779158.2| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401] gi|189403296|ref|ZP_02794595.2| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486] gi|189404085|ref|ZP_02787144.2| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501] gi|189404788|ref|ZP_02811062.2| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869] gi|189405548|ref|ZP_02822778.2| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508] gi|191168030|ref|ZP_03029830.1| conserved hypothetical protein [Escherichia coli B7A] gi|193062091|ref|ZP_03043187.1| conserved hypothetical protein [Escherichia coli E22] gi|193067407|ref|ZP_03048375.1| conserved hypothetical protein [Escherichia coli E110019] gi|194430231|ref|ZP_03062729.1| conserved hypothetical protein [Escherichia coli B171] gi|194438776|ref|ZP_03070862.1| conserved hypothetical protein [Escherichia coli 101-1] gi|208808473|ref|ZP_03250810.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206] gi|208812353|ref|ZP_03253682.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045] gi|208820794|ref|ZP_03261114.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042] gi|209400717|ref|YP_002272641.1| hypothetical protein ECH74115_4491 [Escherichia coli O157:H7 str. EC4115] gi|217327331|ref|ZP_03443414.1| conserved hypothetical protein [Escherichia coli O157:H7 str. TW14588] gi|237706077|ref|ZP_04536558.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|293406781|ref|ZP_06650707.1| hypothetical protein ECGG_02091 [Escherichia coli FVEC1412] gi|298382522|ref|ZP_06992119.1| hypothetical protein ECFG_02283 [Escherichia coli FVEC1302] gi|331643870|ref|ZP_08345001.1| putative cytoplasmic protein [Escherichia coli H736] gi|331648971|ref|ZP_08350059.1| putative cytoplasmic protein [Escherichia coli M605] gi|331654776|ref|ZP_08355776.1| putative cytoplasmic protein [Escherichia coli M718] gi|331674708|ref|ZP_08375467.1| putative cytoplasmic protein [Escherichia coli TA280] gi|331679251|ref|ZP_08379923.1| putative cytoplasmic protein [Escherichia coli H591] gi|332279999|ref|ZP_08392412.1| conserved hypothetical protein [Shigella sp. D9] gi|26110182|gb|AAN82368.1|AE016767_128 Hypothetical protein yhbC [Escherichia coli CFT073] gi|91074166|gb|ABE09047.1| conserved hypothetical protein [Escherichia coli UTI89] gi|170518541|gb|ACB16719.1| conserved hypothetical protein [Escherichia coli SMS-3-5] gi|187770840|gb|EDU34684.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196] gi|188016402|gb|EDU54524.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113] gi|189001090|gb|EDU70076.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076] gi|189358736|gb|EDU77155.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401] gi|189361416|gb|EDU79835.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486] gi|189367607|gb|EDU86023.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501] gi|189374130|gb|EDU92546.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869] gi|189379725|gb|EDU98141.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508] gi|190901899|gb|EDV61648.1| conserved hypothetical protein [Escherichia coli B7A] gi|192932311|gb|EDV84909.1| conserved hypothetical protein [Escherichia coli E22] gi|192959364|gb|EDV89799.1| conserved hypothetical protein [Escherichia coli E110019] gi|194411732|gb|EDX28056.1| conserved hypothetical protein [Escherichia coli B171] gi|194422248|gb|EDX38249.1| conserved hypothetical protein [Escherichia coli 101-1] gi|208728274|gb|EDZ77875.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206] gi|208733630|gb|EDZ82317.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045] gi|208740917|gb|EDZ88599.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042] gi|209162117|gb|ACI39550.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4115] gi|217319698|gb|EEC28123.1| conserved hypothetical protein [Escherichia coli O157:H7 str. TW14588] gi|226899117|gb|EEH85376.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|291426787|gb|EFE99819.1| hypothetical protein ECGG_02091 [Escherichia coli FVEC1412] gi|298277662|gb|EFI19178.1| hypothetical protein ECFG_02283 [Escherichia coli FVEC1302] gi|323376934|gb|ADX49202.1| protein of unknown function DUF150 [Escherichia coli KO11] gi|331037341|gb|EGI09565.1| putative cytoplasmic protein [Escherichia coli H736] gi|331042718|gb|EGI14860.1| putative cytoplasmic protein [Escherichia coli M605] gi|331048158|gb|EGI20235.1| putative cytoplasmic protein [Escherichia coli M718] gi|331068147|gb|EGI39543.1| putative cytoplasmic protein [Escherichia coli TA280] gi|331073316|gb|EGI44639.1| putative cytoplasmic protein [Escherichia coli H591] gi|332102351|gb|EGJ05697.1| conserved hypothetical protein [Shigella sp. D9] Length = 154 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 9/158 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ +I +E + F V I + + L+I+++ +DG + + DC ++S Sbjct: 3 VGLSTLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQ 61 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LEVSSPG+DRP+ + R+ G V + ++ +++K G I Sbjct: 62 VSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 121 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E + E + ++ A L+ Sbjct: 122 KAVDGEMITVTVEGKDEV--------FALSNIQKANLV 151 >gi|307129383|ref|YP_003881399.1| hypothetical protein Dda3937_02343 [Dickeya dadantii 3937] gi|306526912|gb|ADM96842.1| conserved protein [Dickeya dadantii 3937] Length = 150 Score = 189 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 78/153 (50%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I +E + + V I + + L+I+++ +DG +T+ DC ++S +S +L Sbjct: 4 LEQKLTEMISAPVEALGYELVGIEFIRGRQSTLRIYIDSEDG-ITVDDCADVSHQVSAVL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG++RP+ + + R+ G V+ + ++ +++K G I Sbjct: 63 DVEDPISVAYNLEVSSPGLERPLFTAAHYERFAGEEVSLVLRMAVQNRRKWQGIIKSVEG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E + E + ++ A L+ Sbjct: 123 EMITVTVEGKDEV--------FALSNIQKANLV 147 >gi|83595107|ref|YP_428859.1| hypothetical protein Rru_A3778 [Rhodospirillum rubrum ATCC 11170] gi|91208354|sp|Q2RMS3|RIMP_RHORT RecName: Full=Ribosome maturation factor rimP gi|83578021|gb|ABC24572.1| Protein of unknown function DUF150 [Rhodospirillum rubrum ATCC 11170] Length = 225 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 59/176 (33%), Positives = 100/176 (56%), Gaps = 3/176 (1%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDG-NMTLRDCEELSQAI 76 D + G + ++ P ++ M + V+++LL +N LQ+ ER DG MT+ DCE +S+A+ Sbjct: 35 DARMMGHLEKLLAPTLDAMGYEVVRVTLLGSQNPTLQVMAERLDGVAMTVSDCETISRAL 94 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 +LDVE+ I G Y LE+SSPGIDRP+ R D+ R+ GH E +++ G ++ Sbjct: 95 GALLDVEDPIAGRYSLEISSPGIDRPLTRPKDYARFAGHEARIETDRLIEGHRRMKGLLL 154 Query: 137 GTSET-GFFLE-KEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 G E L E + +D ++ I F +++ A+L++TD L+ +L + + A Sbjct: 155 GIDEDRTVRLRLIEGKAAEDGTLPEVEIPFGAIVKAKLLLTDALIAKALKDAEALA 210 >gi|191172206|ref|ZP_03033749.1| conserved hypothetical protein [Escherichia coli F11] gi|194433780|ref|ZP_03066055.1| conserved hypothetical protein [Shigella dysenteriae 1012] gi|227887893|ref|ZP_04005698.1| UPF0090 protein yhbC [Escherichia coli 83972] gi|238902274|ref|YP_002928070.1| hypothetical protein BWG_2874 [Escherichia coli BW2952] gi|291284546|ref|YP_003501364.1| hypothetical protein G2583_3895 [Escherichia coli O55:H7 str. CB9615] gi|331659459|ref|ZP_08360401.1| putative cytoplasmic protein [Escherichia coli TA206] gi|331664784|ref|ZP_08365689.1| putative cytoplasmic protein [Escherichia coli TA143] gi|331669999|ref|ZP_08370844.1| putative cytoplasmic protein [Escherichia coli TA271] gi|331684819|ref|ZP_08385411.1| putative cytoplasmic protein [Escherichia coli H299] gi|67476527|sp|P0A8A9|RIMP_ECOL6 RecName: Full=Ribosome maturation factor rimP gi|67476528|sp|P0A8B0|RIMP_ECO57 RecName: Full=Ribosome maturation factor rimP gi|67476531|sp|P0A8B1|RIMP_SHIFL RecName: Full=Ribosome maturation factor rimP gi|91208385|sp|Q32BG3|RIMP_SHIDS RecName: Full=Ribosome maturation factor rimP gi|91208386|sp|Q3YX71|RIMP_SHISS RecName: Full=Ribosome maturation factor rimP gi|166979883|sp|A1AG75|RIMP_ECOK1 RecName: Full=Ribosome maturation factor rimP gi|259585759|sp|C4ZSR1|RIMP_ECOBW RecName: Full=Ribosome maturation factor rimP gi|259585820|sp|B6I1P5|RIMP_ECOSE RecName: Full=Ribosome maturation factor rimP gi|259585821|sp|B1LFS2|RIMP_ECOSM RecName: Full=Ribosome maturation factor rimP gi|259585822|sp|Q1R6G7|RIMP_ECOUT RecName: Full=Ribosome maturation factor rimP gi|259585823|sp|B5YS60|RIMP_ECO5E RecName: Full=Ribosome maturation factor rimP gi|259585825|sp|B1IQV1|RIMP_ECOLC RecName: Full=Ribosome maturation factor rimP gi|259585826|sp|B7UJ65|RIMP_ECO27 RecName: Full=Ribosome maturation factor rimP gi|12517781|gb|AAG58306.1|AE005545_8 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|606110|gb|AAA57973.1| gtg start; differences from database entry [Escherichia coli str. K-12 substr. MG1655] gi|13363524|dbj|BAB37474.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|30042769|gb|AAP18492.1| hypothetical protein S3428 [Shigella flexneri 2a str. 2457T] gi|56383831|gb|AAN44678.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|73857184|gb|AAZ89891.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|81242632|gb|ABB63342.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|115514590|gb|ABJ02665.1| conserved hypothetical protein [Escherichia coli APEC O1] gi|190907516|gb|EDV67112.1| conserved hypothetical protein [Escherichia coli F11] gi|194418043|gb|EDX34137.1| conserved hypothetical protein [Shigella dysenteriae 1012] gi|209758318|gb|ACI77471.1| hypothetical protein ECs4051 [Escherichia coli] gi|209758320|gb|ACI77472.1| hypothetical protein ECs4051 [Escherichia coli] gi|209758322|gb|ACI77473.1| hypothetical protein ECs4051 [Escherichia coli] gi|209758324|gb|ACI77474.1| hypothetical protein ECs4051 [Escherichia coli] gi|209758326|gb|ACI77475.1| hypothetical protein ECs4051 [Escherichia coli] gi|222034889|emb|CAP77632.1| UPF0090 protein yhbC [Escherichia coli LF82] gi|227835289|gb|EEJ45755.1| UPF0090 protein yhbC [Escherichia coli 83972] gi|238860383|gb|ACR62381.1| conserved protein [Escherichia coli BW2952] gi|281602554|gb|ADA75538.1| hypothetical protein SFxv_3524 [Shigella flexneri 2002017] gi|290764419|gb|ADD58380.1| hypothetical protein G2583_3895 [Escherichia coli O55:H7 str. CB9615] gi|323936134|gb|EGB32428.1| yhbC protein [Escherichia coli E1520] gi|323941728|gb|EGB37907.1| yhbC [Escherichia coli E482] gi|323946974|gb|EGB42990.1| yhbC protein [Escherichia coli H120] gi|323951310|gb|EGB47185.1| yhbC [Escherichia coli H252] gi|323957681|gb|EGB53395.1| yhbC [Escherichia coli H263] gi|323961058|gb|EGB56673.1| yhbC [Escherichia coli H489] gi|323966352|gb|EGB61786.1| yhbC [Escherichia coli M863] gi|323970265|gb|EGB65536.1| yhbC [Escherichia coli TA007] gi|323979111|gb|EGB74189.1| yhbC [Escherichia coli TW10509] gi|324115224|gb|EGC09188.1| yhbC [Escherichia fergusonii B253] gi|324119537|gb|EGC13419.1| yhbC [Escherichia coli E1167] gi|325498753|gb|EGC96612.1| hypothetical protein ECD227_2850 [Escherichia fergusonii ECD227] gi|331054041|gb|EGI26070.1| putative cytoplasmic protein [Escherichia coli TA206] gi|331058032|gb|EGI30014.1| putative cytoplasmic protein [Escherichia coli TA143] gi|331062912|gb|EGI34826.1| putative cytoplasmic protein [Escherichia coli TA271] gi|331078434|gb|EGI49640.1| putative cytoplasmic protein [Escherichia coli H299] Length = 152 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 9/158 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ +I +E + F V I + + L+I+++ +DG + + DC ++S Sbjct: 1 MGLSTLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LEVSSPG+DRP+ + R+ G V + ++ +++K G I Sbjct: 60 VSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E + E + ++ A L+ Sbjct: 120 KAVDGEMITVTVEGKDEV--------FALSNIQKANLV 149 >gi|91208384|sp|Q31W49|RIMP_SHIBS RecName: Full=Ribosome maturation factor rimP gi|81247001|gb|ABB67709.1| conserved hypothetical protein [Shigella boydii Sb227] Length = 152 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 75/158 (47%), Gaps = 9/158 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ +I +E + F V I + L+I+++ +DG + + DC ++S Sbjct: 1 MGLSTLEQKLTEMITAPVEALGFELVGIEFIRGHTSTLRIYIDSEDG-INVDDCADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LEVSSPG+DRP+ + R+ G V + ++ +++K G I Sbjct: 60 VSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E + E + ++ A L+ Sbjct: 120 KAVDGEMITVTVEGKDEV--------FALSNIQKANLV 149 >gi|138894779|ref|YP_001125232.1| hypothetical protein GTNG_1113 [Geobacillus thermodenitrificans NG80-2] gi|134266292|gb|ABO66487.1| Conserved hypothetical protein [Geobacillus thermodenitrificans NG80-2] Length = 170 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 45/155 (29%), Positives = 81/155 (52%), Gaps = 6/155 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + ++ P++ EM V I ++E KN L++F++ DDG + + C +S+ +S Sbjct: 18 VTETVEQLVTPILNEMGLELVDIEYVKEGKNWFLRVFIDSDDG-VDIEQCGVVSEKLSEK 76 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + I +Y LEVSSPG +RP+ + DF++ G V + +++ G++ Sbjct: 77 LDEVDPIPHNYFLEVSSPGAERPLKNEKDFVKAIGKHVYIKTYEPIAGEKQFEGELTAFD 136 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 T L + RG + +AI ++ + SARL V Sbjct: 137 GTTVTLSVKDRGRQK----TVAIPYEKVASARLAV 167 >gi|271499172|ref|YP_003332197.1| hypothetical protein Dd586_0598 [Dickeya dadantii Ech586] gi|270342727|gb|ACZ75492.1| protein of unknown function DUF150 [Dickeya dadantii Ech586] Length = 152 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 78/158 (49%), Gaps = 9/158 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ +I +E + + V I + + L+I+++ +DG +T+ DC ++S Sbjct: 1 MGLSTLEQKLTEMISAPVEALGYELVGIEFIRGRQSTLRIYIDSEDG-ITVDDCADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LEVSSPG+DRP+ + + + G V+ + ++ +++K G I Sbjct: 60 VSAVLDVEDPISVAYNLEVSSPGLDRPLFTAAHYAHFVGEEVSLVLRMAVQNRRKWQGII 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E + E + ++ A L+ Sbjct: 120 KSVEGEMITVTVEGKDEV--------FALSNIQKANLV 149 >gi|114769757|ref|ZP_01447367.1| hypothetical protein OM2255_09321 [alpha proteobacterium HTCC2255] gi|114549462|gb|EAU52344.1| hypothetical protein OM2255_09321 [alpha proteobacterium HTCC2255] Length = 183 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 58/172 (33%), Positives = 93/172 (54%), Gaps = 8/172 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++S++QPVIE++ + V+I L+ K LQI ++ +G + + DC ++S Sbjct: 4 LIAKSAIDKRMASIVQPVIEDLGYELVRIRLMSGKATTLQIMADKPNGGIDVNDCSKIST 63 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 IS ILDVE+ IE Y LEVSSPG+DRP+ R DF WNG + E +++ G Sbjct: 64 EISAILDVEDPIEAEYALEVSSPGMDRPLTRLKDFQTWNGFEIKVETSELIDGQRRFKGL 123 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNY 186 G + +E + + I + F+ L A+L++TDEL+ AS Sbjct: 124 SRGIEDNDVLIE--------IPQGTIGLDFEWLSDAKLVLTDELVAASQKGR 167 >gi|156935696|ref|YP_001439612.1| hypothetical protein ESA_03563 [Cronobacter sakazakii ATCC BAA-894] gi|259585769|sp|A7MQE3|RIMP_ENTS8 RecName: Full=Ribosome maturation factor rimP gi|156533950|gb|ABU78776.1| hypothetical protein ESA_03563 [Cronobacter sakazakii ATCC BAA-894] Length = 160 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 77/158 (48%), Gaps = 9/158 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ +I +E + + V I + + L+I+++ +DG +T+ DC ++S Sbjct: 9 VGLSTLEQKLTEMITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDG-ITVDDCADVSHQ 67 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LEVSSPG+DRP+ + R+ G V + ++ +++K G I Sbjct: 68 VSSVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARYTGEEVTLVLRMAVQNRRKWQGII 127 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + E + ++ A L+ Sbjct: 128 KAVDGEMITVAVDGKDEV--------FALSNIQRANLV 157 >gi|89109935|ref|AP_003715.1| hypothetical protein [Escherichia coli str. K-12 substr. W3110] gi|110643411|ref|YP_671141.1| hypothetical protein ECP_3258 [Escherichia coli 536] gi|110807039|ref|YP_690559.1| hypothetical protein SFV_3200 [Shigella flexneri 5 str. 8401] gi|157159426|ref|YP_001464647.1| hypothetical protein EcE24377A_3655 [Escherichia coli E24377A] gi|157162655|ref|YP_001459973.1| hypothetical protein EcHS_A3362 [Escherichia coli HS] gi|161367518|ref|NP_289746.2| hypothetical protein Z4531 [Escherichia coli O157:H7 EDL933] gi|161485816|ref|NP_708971.3| hypothetical protein SF3211 [Shigella flexneri 2a str. 301] gi|161486109|ref|NP_755794.2| hypothetical protein c3927 [Escherichia coli CFT073] gi|161486428|ref|NP_838681.2| hypothetical protein S3428 [Shigella flexneri 2a str. 2457T] gi|161950037|ref|YP_404833.2| hypothetical protein SDY_3349 [Shigella dysenteriae Sd197] gi|161986442|ref|YP_312126.2| hypothetical protein SSON_3316 [Shigella sonnei Ss046] gi|162139721|ref|NP_312078.3| hypothetical protein ECs4051 [Escherichia coli O157:H7 str. Sakai] gi|170082707|ref|YP_001732027.1| hypothetical protein ECDH10B_3344 [Escherichia coli str. K-12 substr. DH10B] gi|187733192|ref|YP_001881913.1| hypothetical protein SbBS512_E3601 [Shigella boydii CDC 3083-94] gi|188492035|ref|ZP_02999305.1| conserved hypothetical protein [Escherichia coli 53638] gi|195938390|ref|ZP_03083772.1| hypothetical protein EscherichcoliO157_18476 [Escherichia coli O157:H7 str. EC4024] gi|218550455|ref|YP_002384246.1| hypothetical protein EFER_3149 [Escherichia fergusonii ATCC 35469] gi|218555742|ref|YP_002388655.1| hypothetical protein ECIAI1_3320 [Escherichia coli IAI1] gi|218560242|ref|YP_002393155.1| hypothetical protein ECS88_3554 [Escherichia coli S88] gi|218691462|ref|YP_002399674.1| hypothetical protein ECED1_3830 [Escherichia coli ED1a] gi|218696877|ref|YP_002404544.1| hypothetical protein EC55989_3590 [Escherichia coli 55989] gi|218701941|ref|YP_002409570.1| hypothetical protein ECIAI39_3667 [Escherichia coli IAI39] gi|218706792|ref|YP_002414311.1| hypothetical protein ECUMN_3652 [Escherichia coli UMN026] gi|226524751|ref|NP_417639.6| ribosome maturation factor for 30S subunits [Escherichia coli str. K-12 substr. MG1655] gi|229597230|ref|YP_001723532.2| hypothetical protein EcolC_0528 [Escherichia coli ATCC 8739] gi|229775958|ref|YP_858789.2| hypothetical protein APECO1_3260 [Escherichia coli APEC O1] gi|254163114|ref|YP_003046222.1| hypothetical protein ECB_03037 [Escherichia coli B str. REL606] gi|254795121|ref|YP_003079958.1| hypothetical protein ECSP_4145 [Escherichia coli O157:H7 str. TW14359] gi|256018910|ref|ZP_05432775.1| hypothetical protein ShiD9_08333 [Shigella sp. D9] gi|256024254|ref|ZP_05438119.1| hypothetical protein E4_12823 [Escherichia sp. 4_1_40B] gi|307313123|ref|ZP_07592749.1| protein of unknown function DUF150 [Escherichia coli W] gi|312968491|ref|ZP_07782700.1| conserved hypothetical protein [Escherichia coli 2362-75] gi|123342478|sp|Q0T0B1|RIMP_SHIF8 RecName: Full=Ribosome maturation factor rimP gi|123343572|sp|Q0TCT9|RIMP_ECOL5 RecName: Full=Ribosome maturation factor rimP gi|259585755|sp|A7ZS68|RIMP_ECO24 RecName: Full=Ribosome maturation factor rimP gi|259585756|sp|B7NKN9|RIMP_ECO7I RecName: Full=Ribosome maturation factor rimP gi|259585757|sp|B7N0V5|RIMP_ECO81 RecName: Full=Ribosome maturation factor rimP gi|259585758|sp|B7M078|RIMP_ECO8A RecName: Full=Ribosome maturation factor rimP gi|259585760|sp|B1XGY2|RIMP_ECODH RecName: Full=Ribosome maturation factor rimP gi|259585761|sp|A8A4Y6|RIMP_ECOHS RecName: Full=Ribosome maturation factor rimP gi|259585764|sp|B7MB91|RIMP_ECO45 RecName: Full=Ribosome maturation factor rimP gi|259585765|sp|B7LHN5|RIMP_ECO55 RecName: Full=Ribosome maturation factor rimP gi|259585766|sp|B7NDF6|RIMP_ECOLU RecName: Full=Ribosome maturation factor rimP gi|259585770|sp|B7LR39|RIMP_ESCF3 RecName: Full=Ribosome maturation factor rimP gi|259586197|sp|B2U205|RIMP_SHIB3 RecName: Full=Ribosome maturation factor rimP gi|269849638|sp|P0A8A8|RIMP_ECOLI RecName: Full=Ribosome maturation factor rimP gi|85675966|dbj|BAE77216.1| conserved hypothetical protein [Escherichia coli str. K12 substr. W3110] gi|110345003|gb|ABG71240.1| putative cytoplasmic protein [Escherichia coli 536] gi|110616587|gb|ABF05254.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] gi|157068335|gb|ABV07590.1| conserved hypothetical protein [Escherichia coli HS] gi|157081456|gb|ABV21164.1| conserved hypothetical protein [Escherichia coli E24377A] gi|169890542|gb|ACB04249.1| conserved protein [Escherichia coli str. K-12 substr. DH10B] gi|187430184|gb|ACD09458.1| conserved hypothetical protein [Shigella boydii CDC 3083-94] gi|188487234|gb|EDU62337.1| conserved hypothetical protein [Escherichia coli 53638] gi|218353609|emb|CAU99801.1| conserved hypothetical protein [Escherichia coli 55989] gi|218357996|emb|CAQ90642.1| conserved hypothetical protein [Escherichia fergusonii ATCC 35469] gi|218362510|emb|CAR00134.1| conserved hypothetical protein [Escherichia coli IAI1] gi|218367011|emb|CAR04782.1| conserved hypothetical protein [Escherichia coli S88] gi|218371927|emb|CAR19783.1| conserved hypothetical protein [Escherichia coli IAI39] gi|218429026|emb|CAR09973.2| conserved hypothetical protein [Escherichia coli ED1a] gi|218433889|emb|CAR14806.1| conserved hypothetical protein [Escherichia coli UMN026] gi|226510978|gb|AAC76204.4| ribosome maturation factor for 30S subunits [Escherichia coli str. K-12 substr. MG1655] gi|242378715|emb|CAQ33505.1| ribosome maturation protein [Escherichia coli BL21(DE3)] gi|253975015|gb|ACT40686.1| hypothetical protein ECB_03037 [Escherichia coli B str. REL606] gi|253979171|gb|ACT44841.1| hypothetical protein ECD_03037 [Escherichia coli BL21(DE3)] gi|254594521|gb|ACT73882.1| conserved protein [Escherichia coli O157:H7 str. TW14359] gi|294489705|gb|ADE88461.1| conserved hypothetical protein [Escherichia coli IHE3034] gi|306907034|gb|EFN37542.1| protein of unknown function DUF150 [Escherichia coli W] gi|307555266|gb|ADN48041.1| putative cytoplasmic protein [Escherichia coli ABU 83972] gi|309703598|emb|CBJ02938.1| conserved hypothetical protein [Escherichia coli ETEC H10407] gi|312286709|gb|EFR14620.1| conserved hypothetical protein [Escherichia coli 2362-75] gi|313648588|gb|EFS13030.1| hypothetical protein SF2457T_3054 [Shigella flexneri 2a str. 2457T] gi|315137758|dbj|BAJ44917.1| conserved protein [Escherichia coli DH1] gi|315617253|gb|EFU97862.1| conserved hypothetical protein [Escherichia coli 3431] gi|320181446|gb|EFW56364.1| hypothetical protein SGB_01316 [Shigella boydii ATCC 9905] gi|320194656|gb|EFW69286.1| hypothetical protein EcoM_03098 [Escherichia coli WV_060327] gi|323165128|gb|EFZ50918.1| hypothetical protein SS53G_4591 [Shigella sonnei 53G] gi|323189207|gb|EFZ74491.1| hypothetical protein ECRN5871_2808 [Escherichia coli RN587/1] gi|327255186|gb|EGE66786.1| hypothetical protein ECSTEC7V_5219 [Escherichia coli STEC_7v] gi|332086098|gb|EGI91260.1| hypothetical protein SB521682_3815 [Shigella boydii 5216-82] gi|332752330|gb|EGJ82720.1| hypothetical protein SF434370_3403 [Shigella flexneri 4343-70] gi|332752857|gb|EGJ83242.1| hypothetical protein SFK671_3816 [Shigella flexneri K-671] gi|333014971|gb|EGK34315.1| hypothetical protein SFK227_3827 [Shigella flexneri K-227] Length = 150 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 75/153 (49%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I +E + F V I + + L+I+++ +DG + + DC ++S +S +L Sbjct: 4 LEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+DRP+ + R+ G V + ++ +++K G I Sbjct: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E + E + ++ A L+ Sbjct: 123 EMITVTVEGKDEV--------FALSNIQKANLV 147 >gi|126734453|ref|ZP_01750200.1| hypothetical protein RCCS2_09839 [Roseobacter sp. CCS2] gi|126717319|gb|EBA14183.1| hypothetical protein RCCS2_09839 [Roseobacter sp. CCS2] Length = 192 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 59/178 (33%), Positives = 93/178 (52%), Gaps = 8/178 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + I+ +I PV+E+M F V++ L+ K +LQ+ V+R DG + + +C ++S Sbjct: 5 LIAKAAIDRRIAEIITPVVEDMGFEVVRVRLMTGKESILQVMVQRPDGQIEVDECGQVST 64 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S ILDVE+ I Y LEVSSPGIDRP+ R DF +W G E +++ G Sbjct: 65 ALSAILDVEDPILDVYTLEVSSPGIDRPLTRMKDFDQWEGFEAKIETDELIDGRRRFKGP 124 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + GT + + E I + F+ L A+L++TDEL+R L + Sbjct: 125 LAGTEGDEVLI--------TIAEGTIGLKFEWLSDAKLVLTDELIRDVLRGRKDAGQI 174 >gi|194445687|ref|YP_002042545.1| hypothetical protein SNSL254_A3546 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|195873562|ref|ZP_02697406.2| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197248900|ref|YP_002148214.1| hypothetical protein SeAg_B3477 [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197264321|ref|ZP_03164395.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197301026|ref|ZP_02663047.2| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204928262|ref|ZP_03219462.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205357196|ref|ZP_02345817.2| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205357561|ref|ZP_02571247.2| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205359197|ref|ZP_02668054.2| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205360600|ref|ZP_02684674.2| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|259586187|sp|B5F6U0|RIMP_SALA4 RecName: Full=Ribosome maturation factor rimP gi|259586193|sp|B4TJ08|RIMP_SALHS RecName: Full=Ribosome maturation factor rimP gi|259586194|sp|B4T700|RIMP_SALNS RecName: Full=Ribosome maturation factor rimP gi|62129432|gb|AAX67135.1| Hypothetical protein yhbC [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194404350|gb|ACF64572.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194409325|gb|ACF69544.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195633168|gb|EDX51582.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197212603|gb|ACH50000.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197242576|gb|EDY25196.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289178|gb|EDY28547.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204322584|gb|EDZ07781.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205323251|gb|EDZ11090.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205331278|gb|EDZ18042.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205337765|gb|EDZ24529.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205348549|gb|EDZ35180.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 154 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 9/158 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ +I +E + + V I + + L+I+++ +DG + + DC ++S Sbjct: 3 VGLSTLEQKLTEMITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQ 61 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LEVSSPG+DRPM + R+ G VA + ++ +++K G I Sbjct: 62 VSAVLDVEDPISVAYNLEVSSPGLDRPMFTADHYARFQGEEVALVLRMAVQNRRKWQGII 121 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E + E + ++ A L+ Sbjct: 122 KAVDGEMITVTVEGKDEV--------FALSNIQKANLV 151 >gi|283788202|ref|YP_003368067.1| hypothetical protein ROD_46621 [Citrobacter rodentium ICC168] gi|282951656|emb|CBG91356.1| conserved hypothetical protein [Citrobacter rodentium ICC168] Length = 154 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 77/158 (48%), Gaps = 9/158 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ +I +E + + V I + + L+I+++ +DG + + DC ++S Sbjct: 3 VGLSTLEQKLTEMITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQ 61 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S ++DVE+ I Y LEVSSPG+DRP+ + R+ G V+ + ++ +++K G I Sbjct: 62 VSAVMDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFLGEEVSLVLRMAVQNRRKWQGVI 121 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E + E + ++ A L+ Sbjct: 122 KAVDGEMITVAVEGKDEV--------FALSNIQKANLV 151 >gi|161984849|ref|YP_409537.2| hypothetical protein SBO_3212 [Shigella boydii Sb227] Length = 150 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 74/153 (48%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I +E + F V I + L+I+++ +DG + + DC ++S +S +L Sbjct: 4 LEQKLTEMITAPVEALGFELVGIEFIRGHTSTLRIYIDSEDG-INVDDCADVSHQVSAVL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+DRP+ + R+ G V + ++ +++K G I Sbjct: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E + E + ++ A L+ Sbjct: 123 EMITVTVEGKDEV--------FALSNIQKANLV 147 >gi|251791037|ref|YP_003005758.1| hypothetical protein Dd1591_3467 [Dickeya zeae Ech1591] gi|247539658|gb|ACT08279.1| protein of unknown function DUF150 [Dickeya zeae Ech1591] Length = 154 Score = 188 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 78/158 (49%), Gaps = 9/158 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ +I +E + + V I + + L+I+++ +DG +T+ DC ++S Sbjct: 3 VGLSTLEQKLTEMISAPVEALGYELVGIEFIRGRQSTLRIYIDSEDG-ITVDDCADVSHQ 61 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LEVSSPG+DRP+ + + + G V+ + ++ +++K G I Sbjct: 62 VSAVLDVEDPISVAYNLEVSSPGLDRPLFTAAHYAHFVGEEVSLVLRMAVQNRRKWQGII 121 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + E + ++ A L+ Sbjct: 122 KSVEGEMITVTVDGKEEV--------FALSNIQKANLV 151 >gi|291616008|ref|YP_003518750.1| YhbC [Pantoea ananatis LMG 20103] gi|291151038|gb|ADD75622.1| YhbC [Pantoea ananatis LMG 20103] gi|327396259|dbj|BAK13681.1| hypothetical UPF0090 protein YhbC [Pantoea ananatis AJ13355] Length = 154 Score = 188 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 76/158 (48%), Gaps = 9/158 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ ++ +E + + V I + + L+I+++ +DG + + DC ++S Sbjct: 3 VGLSTLEQKLTELVSAPVEALGYELVGIEFVRGRTSTLRIYIDSEDG-INVDDCADVSHQ 61 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S ++DVE+ I Y LEVSSPG+DRP+ + R+ G V+ + ++ +++K G I Sbjct: 62 VSAVMDVEDPITVPYHLEVSSPGLDRPLFTAEHYARFTGDEVSLVLRMAVQNRRKWQGII 121 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E E + ++ A L+ Sbjct: 122 KSVEGEMITVNVEGNDEV--------FALSNIQKANLV 151 >gi|205354192|ref|YP_002227993.1| hypothetical protein SG3179 [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|259586192|sp|B5REN8|RIMP_SALG2 RecName: Full=Ribosome maturation factor rimP gi|205273973|emb|CAR38978.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326629313|gb|EGE35656.1| Ribosome maturation factor rimP [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 154 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 42/157 (26%), Positives = 77/157 (49%), Gaps = 9/157 (5%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAI 76 G L ++ +I +E + + V I + + L+I+++ +DG + + DC ++S + Sbjct: 4 GLSTLEQKLTEMITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQV 62 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 S +LDVE+ I Y LEVSSPG+DRPM + R+ G VA + ++ +++K G I Sbjct: 63 SAVLDVEDPISVAYNLEVSSPGLDRPMFTADHYARFQGEEVALVLRMAVQNRRKWQGIIK 122 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E + E + ++ A L+ Sbjct: 123 AVDGEMITVTVEGKDEV--------FALSNIQKANLV 151 >gi|310817129|ref|YP_003965093.1| Ribosome maturation factor rimP [Ketogulonicigenium vulgare Y25] gi|308755864|gb|ADO43793.1| Ribosome maturation factor rimP [Ketogulonicigenium vulgare Y25] Length = 218 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 59/187 (31%), Positives = 95/187 (50%), Gaps = 15/187 (8%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ ++QPVIE+M F V+I ++ K LQI ++ DG + + DC +S Sbjct: 4 LIARAAIDRRVAEIVQPVIEDMGFELVRIRVMTGKETTLQIMAQKPDGTIEVDDCAAIST 63 Query: 75 AISP-----------ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVL 123 A+S +LDVE+ I +Y LEVSSPGIDRP+ R DF W+G+ E Sbjct: 64 AVSAGLDPPPPAVSAVLDVEDPIVENYTLEVSSPGIDRPLTRLKDFDLWDGYTAKIETEE 123 Query: 124 SSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 +++ G++ GT +E + E + I + F+ L A+L++TDEL+R L Sbjct: 124 LIDGRRRFKGELRGTEGDEILIELDDAAE----PVTIGLKFEWLSDAKLVLTDELIRDVL 179 Query: 184 NNYGSYA 190 Sbjct: 180 RGRKDAG 186 >gi|54040273|sp|P67219|RIMP_SALTI RecName: Full=Ribosome maturation factor rimP gi|54042668|sp|P67218|RIMP_SALTY RecName: Full=Ribosome maturation factor rimP gi|91208382|sp|Q57JH7|RIMP_SALCH RecName: Full=Ribosome maturation factor rimP gi|91208383|sp|Q5PLA8|RIMP_SALPA RecName: Full=Ribosome maturation factor rimP gi|259586212|sp|A9N734|RIMP_SALPB RecName: Full=Ribosome maturation factor rimP gi|259586213|sp|C0PZ56|RIMP_SALPC RecName: Full=Ribosome maturation factor rimP gi|259586214|sp|B5BGJ7|RIMP_SALPK RecName: Full=Ribosome maturation factor rimP gi|259586216|sp|B5QZW0|RIMP_SALEP RecName: Full=Ribosome maturation factor rimP gi|259586218|sp|A9MP34|RIMP_SALAR RecName: Full=Ribosome maturation factor rimP gi|323131648|gb|ADX19078.1| Ribosome maturation factor rimP [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 152 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 9/158 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ +I +E + + V I + + L+I+++ +DG + + DC ++S Sbjct: 1 MGLSTLEQKLTEMITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LEVSSPG+DRPM + R+ G VA + ++ +++K G I Sbjct: 60 VSAVLDVEDPISVAYNLEVSSPGLDRPMFTADHYARFQGEEVALVLRMAVQNRRKWQGII 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E + E + ++ A L+ Sbjct: 120 KAVDGEMITVTVEGKDEV--------FALSNIQKANLV 149 >gi|290511547|ref|ZP_06550916.1| hypothetical protein HMPREF0485_03317 [Klebsiella sp. 1_1_55] gi|289776540|gb|EFD84539.1| hypothetical protein HMPREF0485_03317 [Klebsiella sp. 1_1_55] Length = 154 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 77/158 (48%), Gaps = 9/158 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ ++ +E + F V I + + L+I+++ +DG + + DC ++S Sbjct: 3 VGLSTLEQKLTEMLTAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQ 61 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S ++DVE+ I Y LEVSSPG+DRPM + R+ G VA + ++ +++K G I Sbjct: 62 VSAVMDVEDPITVAYNLEVSSPGLDRPMFTAEHYQRFTGEEVALVLRMAVQNRRKWQGII 121 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E + E + ++ A L+ Sbjct: 122 KAVDGEMITVTVEGKDEV--------FALSNIQKANLV 151 >gi|259585827|sp|A8AQ61|RIMP_CITK8 RecName: Full=Ribosome maturation factor rimP Length = 152 Score = 187 bits (477), Expect = 4e-46, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 9/158 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ +I +E + + V I + + L+I+++ +DG + + DC ++S Sbjct: 1 MGLSTLEQKLTEMITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LEVSSPG+DRPM + R+ G V + ++ +++K G I Sbjct: 60 VSAVLDVEDPITVAYNLEVSSPGLDRPMFTAEHYARFLGEEVTLVLRMAVQNRRKWQGVI 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E + E + ++ A L+ Sbjct: 120 KAVDGEMITVTVEGKDEV--------FALSNIQKANLV 149 >gi|162147157|ref|YP_001601618.1| hypothetical protein GDI_1362 [Gluconacetobacter diazotrophicus PAl 5] gi|161785734|emb|CAP55305.1| conserved protein [Gluconacetobacter diazotrophicus PAl 5] Length = 193 Score = 187 bits (477), Expect = 4e-46, Method: Composition-based stats. Identities = 53/168 (31%), Positives = 97/168 (57%), Gaps = 8/168 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-MTLRDCEELSQAISPILDVE 83 +++++ PV+ +M F V++++L ++ +QI +R DG + + DCE++S A+ +LDVE Sbjct: 1 MAAIVAPVLADMGFELVRVAILGRESPTVQIMADRADGTLIAIEDCEQISHAVGAVLDVE 60 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + + G + LEVSS GIDRP+ R D+ R+ GH+ E+ + +++ G ++G + Sbjct: 61 DPLPGAWTLEVSSAGIDRPLTRAKDWTRFAGHLAKAEVNIPIDGRKRFSGILLGAEDGFG 120 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAG 191 L E E +A+ + ARL++TDEL+ AS + + G Sbjct: 121 RLRLEDGTE-------VALPLSDMRRARLVLTDELIAASAHMMRAPGG 161 >gi|170765477|ref|ZP_02900288.1| conserved hypothetical protein [Escherichia albertii TW07627] gi|170124623|gb|EDS93554.1| conserved hypothetical protein [Escherichia albertii TW07627] Length = 150 Score = 187 bits (477), Expect = 5e-46, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 74/153 (48%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I +E + F V I + + L+I+++ +DG + + DC ++S +S +L Sbjct: 4 LEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+DRP+ + R+ G + ++ +++K G I Sbjct: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEATLVLRMAVQNRRKWQGVIKAVDG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E + E + ++ A L+ Sbjct: 123 EMITVTVEGKDEV--------FALSNIQKANLV 147 >gi|288933402|ref|YP_003437461.1| hypothetical protein Kvar_0519 [Klebsiella variicola At-22] gi|288888131|gb|ADC56449.1| protein of unknown function DUF150 [Klebsiella variicola At-22] Length = 152 Score = 187 bits (477), Expect = 5e-46, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 77/158 (48%), Gaps = 9/158 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ ++ +E + F V I + + L+I+++ +DG + + DC ++S Sbjct: 1 MGLSTLEQKLTEMLTAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S ++DVE+ I Y LEVSSPG+DRPM + R+ G VA + ++ +++K G I Sbjct: 60 VSAVMDVEDPITVAYNLEVSSPGLDRPMFTAEHYQRFTGEEVALVLRMAVQNRRKWQGII 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E + E + ++ A L+ Sbjct: 120 KAVDGEMITVTVEGKDEV--------FALSNIQKANLV 149 >gi|308189111|ref|YP_003933242.1| UPF0090 protein yhbC [Pantoea vagans C9-1] gi|308059621|gb|ADO11793.1| UPF0090 protein yhbC [Pantoea vagans C9-1] Length = 150 Score = 187 bits (477), Expect = 5e-46, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 76/153 (49%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ ++ +E + + V I + + +L+I+++ +DG + + DC ++S +S ++ Sbjct: 4 LEQKLTELVSAPVEALGYELVGIEFVRSRTSILRIYIDSEDG-INVDDCADVSHQVSAVM 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+DRP+ + R+ G V+ + ++ +++K G I Sbjct: 63 DVEDPITVPYNLEVSSPGLDRPLFTAEHYTRFMGEEVSLVLRMAVQNRRKWQGTIKSVDG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E E + ++ A L+ Sbjct: 123 EMITVHVEGSDEV--------FALSNIQKANLV 147 >gi|161353583|ref|NP_462201.2| hypothetical protein STM3288 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161486781|ref|NP_806884.2| hypothetical protein t3206 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|161501916|ref|NP_457670.2| hypothetical protein STY3469 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|161936211|ref|YP_152295.2| hypothetical protein SPA3156 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|162139540|ref|YP_218216.2| hypothetical protein SC3229 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194470097|ref|ZP_03076081.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194735644|ref|YP_002116238.1| hypothetical protein SeSA_A3478 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|198245424|ref|YP_002217261.1| hypothetical protein SeD_A3645 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200387280|ref|ZP_03213892.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205358508|ref|ZP_02656955.2| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205359739|ref|ZP_02831643.2| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|213052983|ref|ZP_03345861.1| hypothetical protein Salmoneentericaenterica_08732 [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425431|ref|ZP_03358181.1| hypothetical protein SentesTyphi_07043 [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213581726|ref|ZP_03363552.1| hypothetical protein SentesTyph_11179 [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213621933|ref|ZP_03374716.1| hypothetical protein SentesTyp_32176 [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213645860|ref|ZP_03375913.1| hypothetical protein SentesTy_00020 [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|228879515|ref|YP_001573258.2| hypothetical protein SARI_04336 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|229307088|ref|YP_001590259.2| hypothetical protein SPAB_04100 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|229597265|ref|YP_002047317.2| hypothetical protein SeHA_C3583 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|259586191|sp|B5FI15|RIMP_SALDC RecName: Full=Ribosome maturation factor rimP gi|259586195|sp|B4TWE0|RIMP_SALSV RecName: Full=Ribosome maturation factor rimP gi|194456461|gb|EDX45300.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711146|gb|ACF90367.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197939940|gb|ACH77273.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199604378|gb|EDZ02923.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205333894|gb|EDZ20658.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205343499|gb|EDZ30263.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|267995485|gb|ACY90370.1| hypothetical protein STM14_3971 [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|320087735|emb|CBY97499.1| UPF0090 protein yhbC [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322716286|gb|EFZ07857.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|326625039|gb|EGE31384.1| phage shock protein A [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 150 Score = 187 bits (477), Expect = 5e-46, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 76/153 (49%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I +E + + V I + + L+I+++ +DG + + DC ++S +S +L Sbjct: 4 LEQKLTEMITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+DRPM + R+ G VA + ++ +++K G I Sbjct: 63 DVEDPISVAYNLEVSSPGLDRPMFTADHYARFQGEEVALVLRMAVQNRRKWQGIIKAVDG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E + E + ++ A L+ Sbjct: 123 EMITVTVEGKDEV--------FALSNIQKANLV 147 >gi|296114400|ref|ZP_06833054.1| hypothetical protein GXY_01428 [Gluconacetobacter hansenii ATCC 23769] gi|295979161|gb|EFG85885.1| hypothetical protein GXY_01428 [Gluconacetobacter hansenii ATCC 23769] Length = 210 Score = 187 bits (476), Expect = 6e-46, Method: Composition-based stats. Identities = 54/172 (31%), Positives = 97/172 (56%), Gaps = 8/172 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-MTLRDCEELSQAIS 77 GL I+ +I P + +M F V+++++ ++ +QI +R DG+ +T+ DCE++S A+ Sbjct: 9 TGLDARIADMIGPALVDMGFELVRVAVMGRESPTVQIMADRADGSQITINDCEQISHAVG 68 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ILDVE+ + G + LEVSS GIDRP+ R D+ R+ GH+ E+ + +++ G ++G Sbjct: 69 AILDVEDPLSGEWTLEVSSAGIDRPLTRPKDWDRYAGHLAKAEMNMPVDGRKRFSGIVLG 128 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSY 189 + + + E +A+ F+ + ARL++TD L+ AS Sbjct: 129 ARDGHGLMRLDDGAE-------VALPFEEMRKARLVLTDALIEASARMAHPG 173 >gi|229593531|ref|YP_001456060.2| hypothetical protein CKO_04571 [Citrobacter koseri ATCC BAA-895] Length = 150 Score = 187 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 75/153 (49%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I +E + + V I + + L+I+++ +DG + + DC ++S +S +L Sbjct: 4 LEQKLTEMITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+DRPM + R+ G V + ++ +++K G I Sbjct: 63 DVEDPITVAYNLEVSSPGLDRPMFTAEHYARFLGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E + E + ++ A L+ Sbjct: 123 EMITVTVEGKDEV--------FALSNIQKANLV 147 >gi|75760861|ref|ZP_00740875.1| Hypothetical cytosolic protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491645|gb|EAO54847.1| Hypothetical cytosolic protein [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 174 Score = 187 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 46/163 (28%), Positives = 85/163 (52%), Gaps = 6/163 (3%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEEL 72 R+F D + + + QP++EE++ V + ++E + L++F++ + G + + +C + Sbjct: 16 RLFMDKKVTEVVEAFAQPIVEELNLELVDVEYVKEGQDWFLRVFIDSEKG-VDIEECGAV 74 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+ +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ Sbjct: 75 SERLSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMFE 134 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 GK++ T L + K +I I D + +ARL VT Sbjct: 135 GKLLSYDGTTITLLLTIKTRKK----EIQIPMDKVANARLAVT 173 >gi|56419794|ref|YP_147112.1| hypothetical protein GK1259 [Geobacillus kaustophilus HTA426] gi|81347603|sp|Q5L0J2|RIMP_GEOKA RecName: Full=Ribosome maturation factor rimP gi|56379636|dbj|BAD75544.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 157 Score = 187 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 45/155 (29%), Positives = 81/155 (52%), Gaps = 6/155 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + ++ P+++EM V I ++E KN L++F++ DDG + + C +S+ +S Sbjct: 5 VTETVEQLVTPILDEMGLELVDIEYVKEGKNWFLRVFIDSDDG-VDIEQCGAVSEKLSEK 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + I +Y LEVSSPG +RP+ + DF + G V + +++ G++ Sbjct: 64 LDEVDPIPHNYFLEVSSPGAERPLKKAKDFAKAIGKNVYIKTYEPIEGEKQFEGELTAFD 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 T L + RG + +AI ++ + SARL V Sbjct: 124 GTTVTLLVKDRGRQK----TVAIPYEKVASARLAV 154 >gi|206577891|ref|YP_002236419.1| hypothetical protein KPK_0544 [Klebsiella pneumoniae 342] gi|229269511|ref|YP_001337240.2| hypothetical protein KPN_03578 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|259585803|sp|B5XSX2|RIMP_KLEP3 RecName: Full=Ribosome maturation factor rimP gi|259585806|sp|A6TEI9|RIMP_KLEP7 RecName: Full=Ribosome maturation factor rimP gi|206566949|gb|ACI08725.1| conserved hypothetical protein [Klebsiella pneumoniae 342] Length = 150 Score = 187 bits (475), Expect = 8e-46, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 76/153 (49%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ ++ +E + F V I + + L+I+++ +DG + + DC ++S +S ++ Sbjct: 4 LEQKLTEMLTAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVM 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+DRPM + R+ G VA + ++ +++K G I Sbjct: 63 DVEDPITVAYNLEVSSPGLDRPMFTAEHYQRFTGEEVALVLRMAVQNRRKWQGIIKAVDG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E + E + ++ A L+ Sbjct: 123 EMITVTVEGKDEV--------FALSNIQKANLV 147 >gi|259585819|sp|B2VGS4|RIMP_ERWT9 RecName: Full=Ribosome maturation factor rimP Length = 152 Score = 187 bits (475), Expect = 8e-46, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 76/158 (48%), Gaps = 9/158 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ +I +E + + V I + + L+I+++ +DG + + DC ++S Sbjct: 1 MGLSTLEQKLTELISAPVEALGYELVGIEFVRGRTSTLRIYIDSEDG-INVDDCADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S ++DVE+ I Y LEVSSPG+DRPM + R+ G V+ + ++ +++K G I Sbjct: 60 VSAVMDVEDPITVAYNLEVSSPGLDRPMFTAEHYARFTGEEVSLVLRMAVQNRRKWQGII 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E E + ++ A L+ Sbjct: 120 KSVEGEMITVAVEGNDEV--------FALSNIQKANLV 149 >gi|254439640|ref|ZP_05053134.1| conserved hypothetical protein [Octadecabacter antarcticus 307] gi|198255086|gb|EDY79400.1| conserved hypothetical protein [Octadecabacter antarcticus 307] Length = 188 Score = 187 bits (475), Expect = 8e-46, Method: Composition-based stats. Identities = 57/172 (33%), Positives = 97/172 (56%), Gaps = 4/172 (2%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + I+ +I P IE++ F V++ L+ K +LQI ++ DG + + DC E+S A+S +L Sbjct: 1 MDRRITEIITPTIEDLGFEVVRVRLMTGKESILQIMAQKPDGTIEVDDCGEISTAVSALL 60 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I+ + LEVSSPGIDRP+ R DF++W+G+ E +++ G + G Sbjct: 61 DVEDPIKDVFTLEVSSPGIDRPLTRLKDFVQWDGNEAKIETEELIDGRRRFKGMLRGVEG 120 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 +E E+ GE + I + F+ L A+L++T++L+R L + Sbjct: 121 DEVLIEIEENGE----PVTIGLKFEWLTDAKLVLTEDLIRGVLRGRKDAGQI 168 >gi|311277857|ref|YP_003940088.1| hypothetical protein Entcl_0527 [Enterobacter cloacae SCF1] gi|308747052|gb|ADO46804.1| protein of unknown function DUF150 [Enterobacter cloacae SCF1] Length = 150 Score = 186 bits (474), Expect = 9e-46, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 76/153 (49%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ ++ +E + F V I + + L+I+++ +DG + + DC ++S +S ++ Sbjct: 4 LEQKLTEMLTAPVEALGFELVGIEFVRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVM 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+DRPM + R+ G V+ + ++ +++K G I Sbjct: 63 DVEDPITVAYNLEVSSPGLDRPMFTAEHYTRFLGEEVSLVLRMAVQNRRKWQGIIKAVDG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E + E + ++ A L+ Sbjct: 123 EMITVTVEGKDEV--------FALSNIQKANLV 147 >gi|269103409|ref|ZP_06156106.1| UPF0090 domain-containing protein [Photobacterium damselae subsp. damselae CIP 102761] gi|268163307|gb|EEZ41803.1| UPF0090 domain-containing protein [Photobacterium damselae subsp. damselae CIP 102761] Length = 151 Score = 186 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 83/156 (53%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 L ++ +++P + + + V + + + L+IF+++++G + + DC E+S+ +S Sbjct: 2 TALETQLTEMLEPSVAALGYELVGLEFIRAGEHSTLRIFIDKENG-INVEDCAEVSRQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++DVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ G+++K G I+ Sbjct: 61 AVMDVEDPITVAYNLEVSSPGLERPLFKAAHYEQFIGHEVSLVLKMAMGNRRKWKGDIVA 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + E + ++ A L+ Sbjct: 121 VDGELVTLNVDGNEE--------CFALSNISKANLV 148 >gi|304320432|ref|YP_003854075.1| hypothetical protein PB2503_04292 [Parvularcula bermudensis HTCC2503] gi|303299334|gb|ADM08933.1| hypothetical protein PB2503_04292 [Parvularcula bermudensis HTCC2503] Length = 174 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 54/166 (32%), Positives = 83/166 (50%), Gaps = 6/166 (3%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 ++ ++ P+IE + +++ L K LQI ER DG MT DC LS+A+S +L+ Sbjct: 5 IAALTDLLLPIIETEGYELIRLRLTGAKQQTLQIMAERPDGTMTAEDCARLSRAVSAVLE 64 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + I G Y LEVSSPGIDRP+ R D+ RW G V E+ +++ G + G Sbjct: 65 EADPISGEYVLEVSSPGIDRPLTRLKDYARWEGFVAKIELSQPVEGQKRYRGTLAGVEND 124 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYG 187 ++ + E I F + +L++TDEL+ SL Sbjct: 125 DVCIDLDGE------EETALIPFSIIAGGKLVMTDELIAESLRRAK 164 >gi|196247597|ref|ZP_03146299.1| protein of unknown function DUF150 [Geobacillus sp. G11MC16] gi|259585816|sp|A4IMD3|RIMP_GEOTN RecName: Full=Ribosome maturation factor rimP gi|196212381|gb|EDY07138.1| protein of unknown function DUF150 [Geobacillus sp. G11MC16] Length = 157 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 45/155 (29%), Positives = 81/155 (52%), Gaps = 6/155 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + ++ P++ EM V I ++E KN L++F++ DDG + + C +S+ +S Sbjct: 5 VTETVEQLVTPILNEMGLELVDIEYVKEGKNWFLRVFIDSDDG-VDIEQCGVVSEKLSEK 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + I +Y LEVSSPG +RP+ + DF++ G V + +++ G++ Sbjct: 64 LDEVDPIPHNYFLEVSSPGAERPLKNEKDFVKAIGKHVYIKTYEPIAGEKQFEGELTAFD 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 T L + RG + +AI ++ + SARL V Sbjct: 124 GTTVTLSVKDRGRQK----TVAIPYEKVASARLAV 154 >gi|227112573|ref|ZP_03826229.1| hypothetical protein PcarbP_06402 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227327825|ref|ZP_03831849.1| hypothetical protein PcarcW_11031 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 150 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 77/153 (50%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I + + + V I + + L+I+++ +DG +T+ DC ++S +S +L Sbjct: 4 LEQKLTEMISAPVAALGYELVGIEFIRSRQSTLRIYIDSEDG-ITVDDCADVSHQVSAVL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG++RP+ + +L + G V + ++ +++K +G I Sbjct: 63 DVEDPITVAYNLEVSSPGLERPLFTAAHYLHFVGEEVTVVLRMAVQNRRKWLGVIKAVDG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E + E + ++ A L+ Sbjct: 123 EMITITVEGKDEV--------FALSNIQKANLV 147 >gi|329295929|ref|ZP_08253265.1| hypothetical protein Pstas_03447 [Plautia stali symbiont] Length = 150 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 74/153 (48%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I +E + + V I + + L+I+++ ++G + + DC ++S +S ++ Sbjct: 4 LEQKLTELISAPVEALGYELVGIEFIRGRTSTLRIYIDSEEG-INVDDCADVSHQVSAVM 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG DRP+ + R+ G V+ + ++ +++K G I Sbjct: 63 DVEDPITVAYNLEVSSPGFDRPLFTAEHYARFAGEEVSLVLRMAVQNRRKWQGIIKSVEG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E E + ++ A L+ Sbjct: 123 EMITVTVEGNDEV--------FALSNIQKANLV 147 >gi|259907040|ref|YP_002647396.1| YhbC-like protein [Erwinia pyrifoliae Ep1/96] gi|292900767|ref|YP_003540136.1| hypothetical protein EAM_3073 [Erwinia amylovora ATCC 49946] gi|224962662|emb|CAX54117.1| YhbC-like protein [Erwinia pyrifoliae Ep1/96] gi|291200615|emb|CBJ47747.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946] gi|310766252|gb|ADP11202.1| YhbC-like protein [Erwinia sp. Ejp617] Length = 152 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 76/158 (48%), Gaps = 9/158 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ +I +E + + V I + + L+I+++ +DG + + DC ++S Sbjct: 1 MGLSTLEQKLTELISAPVEALGYELVGIEFVRGRTSTLRIYIDSEDG-INVDDCADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S ++DVE+ I Y LEVSSPG+DRPM + R+ G V+ + ++ +++K G I Sbjct: 60 VSAVMDVEDPITVAYNLEVSSPGLDRPMFTAEHYDRFTGEEVSLVLRMAVQNRRKWQGII 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E E + ++ A L+ Sbjct: 120 KSVEGEMITVAVEGNDEV--------FALSNIQKANLV 149 >gi|161501882|ref|YP_048824.2| hypothetical protein ECA0710 [Pectobacterium atrosepticum SCRI1043] Length = 150 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 78/153 (50%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I + + + V I + + L+I+++ +DG +T+ DC ++S +S +L Sbjct: 4 LEQKLTEMISAPVAALGYELVGIEFIRSRQSTLRIYIDSEDG-ITVDDCADVSHQVSAVL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG++RP+ + +L + G VA + ++ +++K +G I Sbjct: 63 DVEDPITVAYNLEVSSPGLERPLFTAAHYLHFVGEEVAVVLRMAVQNRRKWLGVIKAVDG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E + E + ++ A L+ Sbjct: 123 EMITITVEGKDEV--------FALSNIQKANLV 147 >gi|261419459|ref|YP_003253141.1| hypothetical protein GYMC61_2043 [Geobacillus sp. Y412MC61] gi|319766274|ref|YP_004131775.1| hypothetical protein GYMC52_1166 [Geobacillus sp. Y412MC52] gi|261375916|gb|ACX78659.1| protein of unknown function DUF150 [Geobacillus sp. Y412MC61] gi|317111140|gb|ADU93632.1| protein of unknown function DUF150 [Geobacillus sp. Y412MC52] Length = 157 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 45/155 (29%), Positives = 81/155 (52%), Gaps = 6/155 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + ++ P+++EM V I ++E KN L++F++ DDG + + C +S+ +S Sbjct: 5 VTETVEQLVTPILDEMGLELVDIEYVKEGKNWFLRVFIDSDDG-VDIEQCGAVSEKLSEK 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + I +Y LEVSSPG +RP+ + DF + G V + +++ G++ Sbjct: 64 LDEVDPIPYNYFLEVSSPGAERPLKKAKDFAKAIGKNVYIKTYEPIEGEKQFEGELTAFD 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 T L + RG + +AI ++ + SARL V Sbjct: 124 GTTVTLLVKDRGRQK----TVAIPYEKVASARLAV 154 >gi|262274885|ref|ZP_06052696.1| UPF0090 domain-containing protein [Grimontia hollisae CIP 101886] gi|262221448|gb|EEY72762.1| UPF0090 domain-containing protein [Grimontia hollisae CIP 101886] Length = 151 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 86/158 (54%), Gaps = 10/158 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL + ++++ ++ + + V + + ++ L+I+++ ++G +T+ DC E+S+ +S Sbjct: 2 TGLEKQLLALLEAPVKALDYELVGLEFVRAGQHSTLRIYIDHENG-ITVEDCAEVSRQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++DVE+ I Y LEVSSPG++RP+ + + R+ GH V + ++ +++K G+I+ Sbjct: 61 AVMDVEDPITVAYNLEVSSPGLERPLFKAEHYQRFVGHEVTIVLKMAMQNRRKWKGEILS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 ++ + E A + ++ A L+ + Sbjct: 121 VEGETVTIKVDGNEE--------AFALSNIAKANLVPS 150 >gi|114321099|ref|YP_742782.1| hypothetical protein Mlg_1950 [Alkalilimnicola ehrlichii MLHE-1] gi|114227493|gb|ABI57292.1| protein of unknown function DUF150 [Alkalilimnicola ehrlichii MLHE-1] Length = 176 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 50/163 (30%), Positives = 84/163 (51%), Gaps = 10/163 (6%) Query: 14 RIFGDMGLAGD-ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEE 71 + G M D + ++I P++ M + V I LL+I+++ DG +TL DCE Sbjct: 20 FVAGAMAATEDTLYALIDPLLTGMGYELVGIEYGGPAGKRLLRIYIDSPDG-ITLDDCET 78 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 S+ IS +LDVE+ I G Y LE+SSPG+DRP+ + SD+ R+ G + + +++ Sbjct: 79 CSRQISAVLDVEDPIPGEYTLEISSPGLDRPIFKASDYDRFAGEQIKIRLSAPWEGRRRF 138 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G + G + G + + ++ I D + ARLI+ Sbjct: 139 KGVLAGLGDEGVRV-------VEAQGDEVQIPLDLIEKARLIL 174 >gi|317493624|ref|ZP_07952045.1| yhbC protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918567|gb|EFV39905.1| yhbC protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 152 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 78/158 (49%), Gaps = 9/158 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ +I +E + F V I + + L+I+++ D+G + + DC ++S Sbjct: 1 MGLSTLEQKLTEMISAPVEALGFELVGIEFIRSHHSTLRIYIDSDEG-INVDDCADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LEVSSPG+DRPM ++R+ G V+ + ++ +++K G I Sbjct: 60 VSAVLDVEDPITVAYNLEVSSPGLDRPMFTADHYVRFMGEEVSLVLRMAVQNRRKWQGII 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + E + ++ A L+ Sbjct: 120 KAVEGEMITVTVDGKDEV--------FALSNIQKANLV 149 >gi|238760243|ref|ZP_04621388.1| hypothetical protein yaldo0001_39490 [Yersinia aldovae ATCC 35236] gi|238701566|gb|EEP94138.1| hypothetical protein yaldo0001_39490 [Yersinia aldovae ATCC 35236] Length = 152 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 9/158 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ +I +E + + V I + + L+I+++ DDG +T+ C ++S Sbjct: 1 MGLSTLEQKLTEIISAPVEALGYELVGIEFIRGRQSTLRIYIDSDDG-ITVDACADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LEVSSPG+DRPM + R+ G V + ++ +++K G I Sbjct: 60 VSAVLDVEDPITVAYNLEVSSPGLDRPMFTAEHYTRYLGENVTLVLRMAMQNRRKWQGII 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + E + ++ A L+ Sbjct: 120 KAVDGEMITVTVDGKDEV--------FALSNIQKANLV 149 >gi|323162864|gb|EFZ48699.1| hypothetical protein ECE128010_0824 [Escherichia coli E128010] Length = 150 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 75/153 (49%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I +E + F V I + + L+I+++ +DG + + DC ++S +S +L Sbjct: 4 LEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+DRP+ + R+ G V + ++ +++K G I Sbjct: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKCQGVIKAVDG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E + E + ++ A L+ Sbjct: 123 EMITVTVEGKDEV--------FALSNIQKANLV 147 >gi|297530566|ref|YP_003671841.1| hypothetical protein GC56T3_2294 [Geobacillus sp. C56-T3] gi|297253818|gb|ADI27264.1| protein of unknown function DUF150 [Geobacillus sp. C56-T3] Length = 157 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 45/155 (29%), Positives = 81/155 (52%), Gaps = 6/155 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + ++ P+++EM V I ++E KN L++F++ DDG + + C +S+ +S Sbjct: 5 VTETVEQLVTPILDEMGLELVDIEYVKEGKNWFLRVFIDSDDG-VDIEQCGAVSEKLSEK 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + I +Y LEVSSPG +RP+ + DF + G V + +++ G++ Sbjct: 64 LDEVDPIPYNYFLEVSSPGAERPLKKAKDFAKAIGKNVYIKTYEPIEGERQFEGELTAFD 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 T L + RG + +AI ++ + SARL V Sbjct: 124 GTTVTLLVKDRGRQK----TVAIPYEKVASARLAV 154 >gi|167401220|ref|ZP_02306720.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|259645220|sp|A7FMS4|RIMP_YERP3 RecName: Full=Ribosome maturation factor rimP gi|21957404|gb|AAM84274.1|AE013671_1 hypothetical protein y0686 [Yersinia pestis KIM 10] gi|45435296|gb|AAS60855.1| conserved hypothetical protein [Yersinia pestis biovar Microtus str. 91001] gi|152961108|gb|ABS48569.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP 31758] gi|167049245|gb|EDR60653.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. UG05-0454] Length = 154 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 9/158 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ +I +E + + V I + + L+I+++ DDG +T+ C ++S Sbjct: 3 VGLSTLEQKLTEIISAPVEALGYELVGIEFIRGRQSTLRIYIDSDDG-ITVDACADVSHQ 61 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LEVSSPG+DRPM + R+ G V + ++ +++K G I Sbjct: 62 VSAVLDVEDPITVAYNLEVSSPGLDRPMFTAEHYTRYLGEEVTLVLRMAMQNRRKWQGII 121 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + E + ++ A L+ Sbjct: 122 KAVDGEMITVTVDGKDEV--------FALSNIQKANLV 151 >gi|282600045|ref|ZP_05972807.2| hypothetical protein PROVRUST_06459 [Providencia rustigianii DSM 4541] gi|282566854|gb|EFB72389.1| hypothetical protein PROVRUST_06459 [Providencia rustigianii DSM 4541] Length = 185 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 79/158 (50%), Gaps = 9/158 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ ++ +E + F V + + + L+IF++ ++G +T+ DC ++S Sbjct: 34 VGLSTLEQKLTEMVSAPVEALGFEFVGLEFVRGRTSTLRIFIDSEEG-ITVDDCADVSHQ 92 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LEVSSPG++RP+ + + R+ G VA + ++ ++++ G I Sbjct: 93 VSAVLDVEDPISVIYNLEVSSPGMERPLFTIAHYERFMGEEVALTLRIAMQNRRRWQGII 152 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + E + ++ A L+ Sbjct: 153 KAVDGEMITVTVDGKDEV--------FALGNIQKANLV 182 >gi|292486835|ref|YP_003529705.1| hypothetical protein EAMY_0347 [Erwinia amylovora CFBP1430] gi|283476836|emb|CAY72674.1| UPF0090 protein yhbC [Erwinia pyrifoliae DSM 12163] gi|291552252|emb|CBA19289.1| UPF0090 protein yhbC [Erwinia amylovora CFBP1430] gi|312170903|emb|CBX79162.1| UPF0090 protein yhbC [Erwinia amylovora ATCC BAA-2158] Length = 150 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 75/153 (49%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I +E + + V I + + L+I+++ +DG + + DC ++S +S ++ Sbjct: 4 LEQKLTELISAPVEALGYELVGIEFVRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVM 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+DRPM + R+ G V+ + ++ +++K G I Sbjct: 63 DVEDPITVAYNLEVSSPGLDRPMFTAEHYDRFTGEEVSLVLRMAVQNRRKWQGIIKSVEG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E E + ++ A L+ Sbjct: 123 EMITVAVEGNDEV--------FALSNIQKANLV 147 >gi|259585768|sp|A4WEY5|RIMP_ENT38 RecName: Full=Ribosome maturation factor rimP gi|145320118|gb|ABP62265.1| protein of unknown function DUF150 [Enterobacter sp. 638] Length = 160 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 76/158 (48%), Gaps = 9/158 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ +I+ +E + + V I + + L+I+++ +DG + + DC ++S Sbjct: 9 VGLSTLEQKLTEMIKAPVEALGYELVGIEFIRSRTSTLRIYIDSEDG-INVDDCADVSHQ 67 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LEVSSPG+ RPM + + G VA + ++ +++K G I Sbjct: 68 VSAVLDVEDPITVAYNLEVSSPGLHRPMFTAEHYTHYIGEEVAVVLRMAVQNRRKWQGVI 127 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E + E + ++ A L+ Sbjct: 128 KAVDGEMITVTVEGKDEV--------FALSNIQKANLV 157 >gi|89067478|ref|ZP_01154991.1| hypothetical protein OG2516_11576 [Oceanicola granulosus HTCC2516] gi|89047047|gb|EAR53101.1| hypothetical protein OG2516_11576 [Oceanicola granulosus HTCC2516] Length = 197 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 4/178 (2%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + I+ +I PVI +M F +V++ L +LQI ++ DG + + +C E+S Sbjct: 4 LIAKTAMDRRITEIIDPVITDMGFETVRVRLQGGNTPVLQIMAQKPDGTIEVDECAEIST 63 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S +LDVE+ I Y LEVSSPGIDRP+ R DF RW G+V E +++ G+ Sbjct: 64 AVSAVLDVEDPILDAYTLEVSSPGIDRPLTRLKDFDRWQGYVAKLETTELIDGRRRFKGE 123 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + G +E E+ GE + I + FD L A+L++TDEL+R L + Sbjct: 124 LGGVEGGEVLIEIEENGE----PVTIGLQFDWLSDAKLVLTDELIREVLKTRKDAGQI 177 >gi|290454910|emb|CBJ57168.1| YhbC-like protein [Pectobacterium carotovorum] Length = 152 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 77/153 (50%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I + + + V I + + L+I+++ +DG +T+ DC ++S +S +L Sbjct: 6 LEQKLTEMISAPVAALGYELVGIEFIRSRQSTLRIYIDSEDG-ITVDDCADVSHQVSAVL 64 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG++RP+ + +L + G V + ++ +++K +G I Sbjct: 65 DVEDPITVAYNLEVSSPGLERPLFTAAHYLHFVGEEVTVVLRMAVQNRRKWLGVIKAVDG 124 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E + E + ++ A L+ Sbjct: 125 EMITITVEGKDEV--------FALSNIQKANLV 149 >gi|91208369|sp|Q6D9A7|RIMP_ERWCT RecName: Full=Ribosome maturation factor rimP Length = 152 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 78/153 (50%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I + + + V I + + L+I+++ +DG +T+ DC ++S +S +L Sbjct: 6 LEQKLTEMISAPVAALGYELVGIEFIRSRQSTLRIYIDSEDG-ITVDDCADVSHQVSAVL 64 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG++RP+ + +L + G VA + ++ +++K +G I Sbjct: 65 DVEDPITVAYNLEVSSPGLERPLFTAAHYLHFVGEEVAVVLRMAVQNRRKWLGVIKAVDG 124 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E + E + ++ A L+ Sbjct: 125 EMITITVEGKDEV--------FALSNIQKANLV 149 >gi|212709947|ref|ZP_03318075.1| hypothetical protein PROVALCAL_00997 [Providencia alcalifaciens DSM 30120] gi|212687459|gb|EEB46987.1| hypothetical protein PROVALCAL_00997 [Providencia alcalifaciens DSM 30120] Length = 183 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 79/158 (50%), Gaps = 9/158 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ ++ +E + F V + + + L+IF++ ++G +T+ DC ++S Sbjct: 32 VGLSTLEQKLTEMVSAPVEALGFEFVGLEFVRGRTSTLRIFIDSEEG-ITVDDCADVSHQ 90 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LE+SSPG++RP+ + + R+ G VA + ++ ++++ G I Sbjct: 91 VSAVLDVEDPISVIYNLEISSPGMERPLFTIAHYERFMGEEVALSLRIAMQNRRRWQGII 150 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + E + ++ A L+ Sbjct: 151 KAVDGEMITVTVDGKDEV--------FALGNIQKANLV 180 >gi|153997275|ref|ZP_02022375.1| hypothetical protein YPE_3717 [Yersinia pestis CA88-4125] gi|229839150|ref|ZP_04459309.1| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896639|ref|ZP_04511806.1| conserved protein [Yersinia pestis Pestoides A] gi|229899714|ref|ZP_04514855.1| conserved protein [Yersinia pestis biovar Orientalis str. India 195] gi|229903876|ref|ZP_04518989.1| conserved protein [Yersinia pestis Nepal516] gi|238787592|ref|ZP_04631390.1| hypothetical protein yfred0001_21120 [Yersinia frederiksenii ATCC 33641] gi|238793020|ref|ZP_04636649.1| hypothetical protein yinte0001_33150 [Yersinia intermedia ATCC 29909] gi|34223130|sp|Q8ZBC0|RIMP_YERPE RecName: Full=Ribosome maturation factor rimP gi|81640534|sp|Q66F62|RIMP_YERPS RecName: Full=Ribosome maturation factor rimP gi|51588112|emb|CAH19718.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP 32953] gi|115349123|emb|CAL22086.1| conserved hypothetical protein [Yersinia pestis CO92] gi|149288912|gb|EDM38992.1| hypothetical protein YPE_3717 [Yersinia pestis CA88-4125] gi|229679646|gb|EEO75749.1| conserved protein [Yersinia pestis Nepal516] gi|229687206|gb|EEO79281.1| conserved protein [Yersinia pestis biovar Orientalis str. India 195] gi|229695516|gb|EEO85563.1| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700417|gb|EEO88449.1| conserved protein [Yersinia pestis Pestoides A] gi|238724379|gb|EEQ16021.1| hypothetical protein yfred0001_21120 [Yersinia frederiksenii ATCC 33641] gi|238727620|gb|EEQ19145.1| hypothetical protein yinte0001_33150 [Yersinia intermedia ATCC 29909] gi|320013701|gb|ADV97272.1| conserved protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 152 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 9/158 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ +I +E + + V I + + L+I+++ DDG +T+ C ++S Sbjct: 1 MGLSTLEQKLTEIISAPVEALGYELVGIEFIRGRQSTLRIYIDSDDG-ITVDACADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LEVSSPG+DRPM + R+ G V + ++ +++K G I Sbjct: 60 VSAVLDVEDPITVAYNLEVSSPGLDRPMFTAEHYTRYLGEEVTLVLRMAMQNRRKWQGII 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + E + ++ A L+ Sbjct: 120 KAVDGEMITVTVDGKDEV--------FALSNIQKANLV 149 >gi|228954093|ref|ZP_04116122.1| hypothetical protein bthur0006_34650 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229191986|ref|ZP_04318956.1| hypothetical protein bcere0002_36430 [Bacillus cereus ATCC 10876] gi|228591537|gb|EEK49386.1| hypothetical protein bcere0002_36430 [Bacillus cereus ATCC 10876] gi|228805659|gb|EEM52249.1| hypothetical protein bthur0006_34650 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 174 Score = 184 bits (469), Expect = 4e-45, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 86/163 (52%), Gaps = 6/163 (3%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEEL 72 R+F D + + + QP++EE++ V + ++E + L++F++ + G + + +C + Sbjct: 16 RLFMDKKVTEVVEAFAQPIVEELNLELVDVEYVKEGQDWFLRVFIDSEKG-VDIEECGAV 74 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+ +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ Sbjct: 75 SERLSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMFE 134 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 GK++ T L + K +I IS D + +ARL VT Sbjct: 135 GKLLSYDGTTITLLLTIKTRKK----EIQISMDKVANARLAVT 173 >gi|260596200|ref|YP_003208771.1| ribosome maturation protein RimP [Cronobacter turicensis z3032] gi|260215377|emb|CBA27399.1| UPF0090 protein yhbC [Cronobacter turicensis z3032] Length = 150 Score = 184 bits (469), Expect = 4e-45, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 76/153 (49%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I +E + + V I + + L+I+++ +DG +T+ DC ++S +S +L Sbjct: 4 LEQKLTEMITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDG-ITVDDCADVSHQVSAVL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ + Y LEVSSPG+DRP+ + R+ G V + ++ +++K G I Sbjct: 63 DVEDPVTVAYNLEVSSPGLDRPLFTAEHYARYTGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + E + ++ A L+ Sbjct: 123 EMITVAVDGKDEV--------FALSNIQRANLV 147 >gi|262393380|ref|YP_003285234.1| hypothetical protein VEA_002607 [Vibrio sp. Ex25] gi|262336974|gb|ACY50769.1| UPF0090 domain-containing protein [Vibrio sp. Ex25] Length = 151 Score = 184 bits (468), Expect = 5e-45, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 81/156 (51%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ +++ +E + V + + + L+I+++ ++G + + DC E+S +S Sbjct: 2 TGLERQLTEMLEAPVEASGYELVGLEFIRAGAHSTLRIYIDHENG-INVDDCAEVSHQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ +++K G I G Sbjct: 61 AVLDVEDPISVAYSLEVSSPGLERPLFKAAHYEQFIGHEVSIVLKMAVANRRKWKGIIHG 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + E + ++ A LI Sbjct: 121 VDGETVTITVDGQQE--------EFALSNISKANLI 148 >gi|108806046|ref|YP_649962.1| hypothetical protein YPA_0048 [Yersinia pestis Antiqua] gi|108813402|ref|YP_649169.1| hypothetical protein YPN_3242 [Yersinia pestis Nepal516] gi|145600794|ref|YP_001164870.1| hypothetical protein YPDSF_3547 [Yersinia pestis Pestoides F] gi|161484876|ref|NP_668023.2| hypothetical protein y0686 [Yersinia pestis KIM 10] gi|161511440|ref|NP_991978.2| hypothetical protein YP_0585 [Yersinia pestis biovar Microtus str. 91001] gi|161760591|ref|YP_069021.2| hypothetical protein YPTB0478 [Yersinia pseudotuberculosis IP 32953] gi|162419022|ref|YP_001608284.1| hypothetical protein YpAngola_A3991 [Yersinia pestis Angola] gi|166010175|ref|ZP_02231073.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. E1979001] gi|167420580|ref|ZP_02312333.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423588|ref|ZP_02315341.1| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170025947|ref|YP_001722452.1| hypothetical protein YPK_3732 [Yersinia pseudotuberculosis YPIII] gi|186893839|ref|YP_001870951.1| hypothetical protein YPTS_0508 [Yersinia pseudotuberculosis PB1/+] gi|218930512|ref|YP_002348387.1| hypothetical protein YPO3498 [Yersinia pestis CO92] gi|229294897|ref|YP_001402552.2| hypothetical protein YpsIP31758_3598 [Yersinia pseudotuberculosis IP 31758] gi|270489134|ref|ZP_06206208.1| conserved hypothetical protein [Yersinia pestis KIM D27] gi|294505369|ref|YP_003569431.1| hypothetical protein YPZ3_3260 [Yersinia pestis Z176003] gi|122383879|sp|Q1CC05|RIMP_YERPA RecName: Full=Ribosome maturation factor rimP gi|122384216|sp|Q1CEL1|RIMP_YERPN RecName: Full=Ribosome maturation factor rimP gi|259511439|sp|A4TRI5|RIMP_YERPP RecName: Full=Ribosome maturation factor rimP gi|259511440|sp|B1JLY2|RIMP_YERPY RecName: Full=Ribosome maturation factor rimP gi|259645221|sp|B2K2Q3|RIMP_YERPB RecName: Full=Ribosome maturation factor rimP gi|259645222|sp|A9R5A1|RIMP_YERPG RecName: Full=Ribosome maturation factor rimP gi|108777050|gb|ABG19569.1| hypothetical protein YPN_3242 [Yersinia pestis Nepal516] gi|108777959|gb|ABG12017.1| hypothetical protein YPA_0048 [Yersinia pestis Antiqua] gi|145212490|gb|ABP41897.1| hypothetical protein YPDSF_3547 [Yersinia pestis Pestoides F] gi|162351837|gb|ABX85785.1| conserved hypothetical protein [Yersinia pestis Angola] gi|165991082|gb|EDR43383.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166961386|gb|EDR57407.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167057758|gb|EDR67504.1| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752481|gb|ACA69999.1| protein of unknown function DUF150 [Yersinia pseudotuberculosis YPIII] gi|186696865|gb|ACC87494.1| protein of unknown function DUF150 [Yersinia pseudotuberculosis PB1/+] gi|262363435|gb|ACY60156.1| hypothetical protein YPD4_3252 [Yersinia pestis D106004] gi|262367190|gb|ACY63747.1| hypothetical protein YPD8_3075 [Yersinia pestis D182038] gi|270337638|gb|EFA48415.1| conserved hypothetical protein [Yersinia pestis KIM D27] gi|294355828|gb|ADE66169.1| hypothetical protein YPZ3_3260 [Yersinia pestis Z176003] Length = 150 Score = 184 bits (468), Expect = 5e-45, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 75/153 (49%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I +E + + V I + + L+I+++ DDG +T+ C ++S +S +L Sbjct: 4 LEQKLTEIISAPVEALGYELVGIEFIRGRQSTLRIYIDSDDG-ITVDACADVSHQVSAVL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+DRPM + R+ G V + ++ +++K G I Sbjct: 63 DVEDPITVAYNLEVSSPGLDRPMFTAEHYTRYLGEEVTLVLRMAMQNRRKWQGIIKAVDG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + E + ++ A L+ Sbjct: 123 EMITVTVDGKDEV--------FALSNIQKANLV 147 >gi|28899232|ref|NP_798837.1| hypothetical protein VP2458 [Vibrio parahaemolyticus RIMD 2210633] gi|153838301|ref|ZP_01990968.1| protein YhbC [Vibrio parahaemolyticus AQ3810] gi|260362205|ref|ZP_05775189.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030] gi|260879073|ref|ZP_05891428.1| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034] gi|260897744|ref|ZP_05906240.1| conserved hypothetical protein [Vibrio parahaemolyticus Peru-466] gi|260900800|ref|ZP_05909195.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037] gi|34223108|sp|Q87M00|RIMP_VIBPA RecName: Full=Ribosome maturation factor rimP gi|28807456|dbj|BAC60721.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|149748290|gb|EDM59149.1| protein YhbC [Vibrio parahaemolyticus AQ3810] gi|308088965|gb|EFO38660.1| conserved hypothetical protein [Vibrio parahaemolyticus Peru-466] gi|308089555|gb|EFO39250.1| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034] gi|308108208|gb|EFO45748.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037] gi|308111471|gb|EFO49011.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030] gi|328474232|gb|EGF45037.1| ribosome maturation protein RimP [Vibrio parahaemolyticus 10329] Length = 151 Score = 184 bits (468), Expect = 5e-45, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 81/156 (51%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ +++ +E + V + + + L+I+++ ++G + + DC E+S +S Sbjct: 2 TGLERQLTEMLEAPVEASGYELVGLEFIRAGAHSTLRIYIDHENG-INVDDCAEVSHQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ +++K G I G Sbjct: 61 AVLDVEDPISVAYSLEVSSPGLERPLFKAAHYEQFIGHEVSIVLKMAVANRRKWKGIIHG 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E + E + ++ A LI Sbjct: 121 VDGETVTVTVEGQQE--------EFALSNISKANLI 148 >gi|259586205|sp|Q2NW25|RIMP_SODGM RecName: Full=Ribosome maturation factor rimP Length = 152 Score = 184 bits (468), Expect = 5e-45, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 77/153 (50%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I +E + F V I + + L+I++ D+G +T+ DC ++S +S +L Sbjct: 6 LEQKLTEMITAPVEALGFELVGIEFIRGRQSTLRIYINSDEG-ITVDDCADVSHQVSAVL 64 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+DRP+ + + ++ G V+ + ++ +++K G I Sbjct: 65 DVEDPISVAYSLEVSSPGLDRPLFTAAHYRQFIGSDVSVVLRIAVQNRRKWQGIIKAVDG 124 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + E + ++ A L+ Sbjct: 125 EMITVTVDGKDEV--------FALQNIQKANLV 149 >gi|330447379|ref|ZP_08311028.1| ribosome maturation protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491570|dbj|GAA05525.1| ribosome maturation protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 151 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 82/156 (52%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 L ++ +++P + + + V + + + L++F++ ++G + + DC E+S+ IS Sbjct: 2 TALETQLTEMLEPSVLALGYELVGLEFIRAGEHSTLRVFIDHENG-INVDDCAEVSRQIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++DVE+ I Y LEVSSPG++RP+ + + + ++ GH + + ++ G+++K G I+ Sbjct: 61 AVMDVEDPITVAYNLEVSSPGLERPLFKAAHYEQFVGHEASIVLKMAMGNRRKWKGDIVA 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + E + + ++ A L+ Sbjct: 121 VDGELITLNVDGNEE--------SFALSNISKANLV 148 >gi|238755154|ref|ZP_04616500.1| hypothetical protein yruck0001_25670 [Yersinia ruckeri ATCC 29473] gi|238706601|gb|EEP98972.1| hypothetical protein yruck0001_25670 [Yersinia ruckeri ATCC 29473] Length = 152 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 76/158 (48%), Gaps = 9/158 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ +I +E + + V I + + L+I+++ +DG +T+ C ++S Sbjct: 1 MGLSTLEQKLTEIISAPVEALGYELVGIEFIRGRQSTLRIYIDSEDG-ITVDACADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LEVSSPG+DRPM + R+ G V + ++ +++K G I Sbjct: 60 VSAVLDVEDPITVAYNLEVSSPGLDRPMFTAEHYARYLGETVILVLRMAMQNRRKWQGII 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + E + ++ A L+ Sbjct: 120 KAVDGEMITVTVDGKDEV--------FALSNIQKANLV 149 >gi|162382799|ref|YP_454055.2| hypothetical protein SG0375 [Sodalis glossinidius str. 'morsitans'] Length = 150 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 77/153 (50%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I +E + F V I + + L+I++ D+G +T+ DC ++S +S +L Sbjct: 4 LEQKLTEMITAPVEALGFELVGIEFIRGRQSTLRIYINSDEG-ITVDDCADVSHQVSAVL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+DRP+ + + ++ G V+ + ++ +++K G I Sbjct: 63 DVEDPISVAYSLEVSSPGLDRPLFTAAHYRQFIGSDVSVVLRIAVQNRRKWQGIIKAVDG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + E + ++ A L+ Sbjct: 123 EMITVTVDGKDEV--------FALQNIQKANLV 147 >gi|238750124|ref|ZP_04611627.1| hypothetical protein yrohd0001_7050 [Yersinia rohdei ATCC 43380] gi|238761766|ref|ZP_04622740.1| hypothetical protein ykris0001_12910 [Yersinia kristensenii ATCC 33638] gi|332160077|ref|YP_004296654.1| hypothetical protein YE105_C0453 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|167012934|sp|A1JIW7|RIMP_YERE8 RecName: Full=Ribosome maturation factor rimP gi|122087772|emb|CAL10558.1| conserved hypothetical protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|238699880|gb|EEP92623.1| hypothetical protein ykris0001_12910 [Yersinia kristensenii ATCC 33638] gi|238711668|gb|EEQ03883.1| hypothetical protein yrohd0001_7050 [Yersinia rohdei ATCC 43380] gi|325664307|gb|ADZ40951.1| hypothetical protein YE105_C0453 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 152 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 76/158 (48%), Gaps = 9/158 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ +I +E + + V I + + L+I+++ DDG +T+ C ++S Sbjct: 1 MGLSTLEQKLTEIISAPVEALGYELVGIEFIRGRQSTLRIYIDSDDG-ITVDACADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LEVSSPG++RPM + R+ G V + ++ +++K G I Sbjct: 60 VSAVLDVEDPITVAYNLEVSSPGLERPMFTAEHYTRYLGEEVTLVLRMAMQNRRKWQGII 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + E + ++ A L+ Sbjct: 120 KAVDGEMITVTVDGKDEV--------FALSNIQKANLV 149 >gi|260893512|ref|YP_003239609.1| protein of unknown function DUF150 [Ammonifex degensii KC4] gi|260865653|gb|ACX52759.1| protein of unknown function DUF150 [Ammonifex degensii KC4] Length = 161 Score = 184 bits (467), Expect = 7e-45, Method: Composition-based stats. Identities = 42/154 (27%), Positives = 80/154 (51%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 + +S + +P+ E + V + +E +L++F+++ G +TL DCE LS+A+ Sbjct: 7 VVEVVSRLAEPLAERLGLELVDVEYKKEGGRWVLRVFIDKPSG-VTLDDCEALSEALGEA 65 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG++RP+ + + F R+ G V + +++ G ++ Sbjct: 66 LDVEDPIPHSYSLEVSSPGVERPLKKPAHFQRFVGREVRVSTLAPVEGQRRFTGVLLAAD 125 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 E G LE + + ++ + + + A L+ Sbjct: 126 EEGIRLETDGK--------ELDLPYRLIAKANLV 151 >gi|291327116|ref|ZP_06127048.2| hypothetical protein PROVRETT_09231 [Providencia rettgeri DSM 1131] gi|291311612|gb|EFE52065.1| hypothetical protein PROVRETT_09231 [Providencia rettgeri DSM 1131] Length = 171 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 79/158 (50%), Gaps = 9/158 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ +I +E + F V + + + L++F++ ++G +T+ DC ++S Sbjct: 20 VGLSTLEQKLTEMISAPVEALGFEFVGLEFVRGRTSTLRVFIDSEEG-ITVDDCADVSHQ 78 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LE+SSPG++RP+ + + R+ G VA + ++ +++K G I Sbjct: 79 VSAVLDVEDPISVIYNLEISSPGLERPLFTIAHYERFMGEEVALTLRIAMQNRRKWQGII 138 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + E + ++ A L+ Sbjct: 139 KAIDGEMITVTVDGKDEV--------FALGNIQKANLV 168 >gi|270265057|ref|ZP_06193320.1| putative cytoplasmic protein [Serratia odorifera 4Rx13] gi|270040991|gb|EFA14092.1| putative cytoplasmic protein [Serratia odorifera 4Rx13] Length = 150 Score = 183 bits (466), Expect = 8e-45, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 75/153 (49%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ ++ +E + F V I + + L+I+++ ++G + + DC ++S +S +L Sbjct: 4 LEQKLTEMLSAPVEALGFELVGIEFIRARQSTLRIYIDSENG-INVDDCADVSHQVSAVL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE I Y LEVSSPG+DRPM + R+ G V+ + ++ +++K G I Sbjct: 63 DVEEPITVAYNLEVSSPGLDRPMFTAEHYTRFLGEEVSLVLRMAVQNRRKWQGIIKSVDG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E + E + ++ A L+ Sbjct: 123 EMITVTVEGKDEV--------FALSNIQKANLV 147 >gi|134299808|ref|YP_001113304.1| hypothetical protein Dred_1961 [Desulfotomaculum reducens MI-1] gi|259585752|sp|A4J5X6|RIMP_DESRM RecName: Full=Ribosome maturation factor rimP gi|134052508|gb|ABO50479.1| protein of unknown function DUF150 [Desulfotomaculum reducens MI-1] Length = 153 Score = 183 bits (466), Expect = 8e-45, Method: Composition-based stats. Identities = 46/155 (29%), Positives = 82/155 (52%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + ++ + P++EE V + ++E N L+IF+++ G + L DC+ +S+ I + Sbjct: 6 VVEKVTEAVAPIVEEAKLELVDVEYVKEGGNWYLRIFIDKP-GGIELDDCQGVSEKIDTL 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + + Y LEVSSPGI+RP+ + DF ++NGH+V + IGK++ + Sbjct: 65 LDEIDPVPQAYFLEVSSPGIERPLKKPQDFEKFNGHLVNITTFAPINGSKNFIGKLLDYN 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E G LE + + Q+ + + +ARL V Sbjct: 125 EEGIHLEIKGK--------QVVLPHQQVATARLAV 151 >gi|118479037|ref|YP_896188.1| hypothetical protein BALH_3445 [Bacillus thuringiensis str. Al Hakam] gi|118418262|gb|ABK86681.1| conserved hypothetical protein [Bacillus thuringiensis str. Al Hakam] Length = 174 Score = 183 bits (466), Expect = 8e-45, Method: Composition-based stats. Identities = 46/163 (28%), Positives = 85/163 (52%), Gaps = 6/163 (3%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEEL 72 R+F D + + + QP++EE++ V + ++E + L++F++ + G + + +C + Sbjct: 16 RLFMDKKVTEVVEAFAQPIVEELNLELVDVEYVKEGQDWFLRVFIDSEKG-VDIEECGAV 74 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+ +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ Sbjct: 75 SERLSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMFE 134 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 GK++ T L + K +I I D + +ARL VT Sbjct: 135 GKMLSYDGTTITLLLTIKTRKK----EIQIPMDKVANARLAVT 173 >gi|229576801|ref|YP_001004802.2| hypothetical protein YE0432 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318607363|emb|CBY28861.1| clustered with transcription termination protein NusA [Yersinia enterocolitica subsp. palearctica Y11] gi|330862030|emb|CBX72197.1| UPF0090 protein YE0432 [Yersinia enterocolitica W22703] Length = 150 Score = 183 bits (466), Expect = 9e-45, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 75/153 (49%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I +E + + V I + + L+I+++ DDG +T+ C ++S +S +L Sbjct: 4 LEQKLTEIISAPVEALGYELVGIEFIRGRQSTLRIYIDSDDG-ITVDACADVSHQVSAVL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG++RPM + R+ G V + ++ +++K G I Sbjct: 63 DVEDPITVAYNLEVSSPGLERPMFTAEHYTRYLGEEVTLVLRMAMQNRRKWQGIIKAVDG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + E + ++ A L+ Sbjct: 123 EMITVTVDGKDEV--------FALSNIQKANLV 147 >gi|258516335|ref|YP_003192557.1| hypothetical protein Dtox_3192 [Desulfotomaculum acetoxidans DSM 771] gi|257780040|gb|ACV63934.1| protein of unknown function DUF150 [Desulfotomaculum acetoxidans DSM 771] Length = 153 Score = 183 bits (466), Expect = 9e-45, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 10/160 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQ 74 LA + ++ PV+EEM+ V + ++E L+IF+++ G + + DC+ +SQ Sbjct: 1 MAKNKLADIVEGLVAPVVEEMAMELVDVEYVKEGSQWYLRIFIDK-TGGIFVDDCQAVSQ 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 +S ++D ++ I Y LEVSSPG+DRP+ + +D+ R+ G+ V K+ G+ Sbjct: 60 KVSRLMDEKDPIPHAYILEVSSPGLDRPLKKAADYERFCGYEVVVTTYAPFNGKKSFSGR 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + G SE G + + + I D + SARL V Sbjct: 120 LDGLSEQGVIINVDG--------TEYVIPVDQVASARLAV 151 >gi|83589894|ref|YP_429903.1| hypothetical protein Moth_1046 [Moorella thermoacetica ATCC 39073] gi|91207996|sp|Q2RJM9|RIMP_MOOTA RecName: Full=Ribosome maturation factor rimP gi|83572808|gb|ABC19360.1| Protein of unknown function DUF150 [Moorella thermoacetica ATCC 39073] Length = 158 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 42/154 (27%), Positives = 82/154 (53%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQAISPI 79 L I +++P++ M + V + E L++F++R +G + L DCE++S+ +S + Sbjct: 4 LTALIQELVEPLLTPMGYELVDLQYGREGGRYILRLFIDRPEG-IGLDDCEQVSRVVSAL 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD ++ I Y LEVSSPG++RP+ +++DF R+ G V ++ G+++G Sbjct: 63 LDEKDPIPHSYYLEVSSPGLERPLKKEADFNRFAGRKVKLRTFAPINGQRHFQGRLLGYQ 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + E+ +AI + + +ARL+ Sbjct: 123 DGQVRMHLEE-------GWDLAIPLEQVATARLV 149 >gi|163796765|ref|ZP_02190723.1| hypothetical protein BAL199_13523 [alpha proteobacterium BAL199] gi|159178019|gb|EDP62566.1| hypothetical protein BAL199_13523 [alpha proteobacterium BAL199] Length = 179 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 62/170 (36%), Positives = 94/170 (55%), Gaps = 7/170 (4%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDG-NMTLRDCEELSQAISPIL 80 A I S+I P IE M + V++ + + LQI ER DG M + DC E+S++IS IL Sbjct: 11 ARRIESIIGPSIEAMGYALVRVMITGGRRPTLQIMAERADGSGMNVDDCAEISRSISAIL 70 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I G Y LEVSSPGIDRP+ R DF R+ G ++ +++ G+++G + Sbjct: 71 DVEDPITGEYTLEVSSPGIDRPLTRLDDFRRFAGFEARIDMAELIEGRKRFGGRLIGVDD 130 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 L + G ++ A+ F+ + A+L++TDEL+ AS A Sbjct: 131 ADRVLLETAPGVRE------ALPFEGIARAKLVLTDELVAASAPAGREGA 174 >gi|304396346|ref|ZP_07378227.1| protein of unknown function DUF150 [Pantoea sp. aB] gi|304355855|gb|EFM20221.1| protein of unknown function DUF150 [Pantoea sp. aB] Length = 143 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 75/149 (50%), Gaps = 9/149 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ ++ +E + + V I + + +L+I+++ +DG + + DC ++S +S ++DVE+ Sbjct: 1 MTELVSAPVEALGYELVGIEFVRSRTSILRIYIDSEDG-INVDDCADVSHQVSAVMDVED 59 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I Y LEVSSPG+DRP+ + R+ G V+ + ++ +++K G I Sbjct: 60 PITVPYNLEVSSPGLDRPLFTAEHYTRFMGEEVSLVLRMAVQNRRKWQGTIKSVDGEMIT 119 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E E + ++ A L+ Sbjct: 120 VHVEGSDEV--------FALSNIQKANLV 140 >gi|188586066|ref|YP_001917611.1| protein of unknown function DUF150 [Natranaerobius thermophilus JW/NM-WN-LF] gi|226734162|sp|B2A393|RIMP_NATTJ RecName: Full=Ribosome maturation factor rimP gi|179350753|gb|ACB85023.1| protein of unknown function DUF150 [Natranaerobius thermophilus JW/NM-WN-LF] Length = 154 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 80/154 (51%), Gaps = 9/154 (5%) Query: 22 AGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 I ++I+P + ++ + V + L +E + +L+++++ G + L DCE +S ++ +L Sbjct: 7 ISQIENIIEPAVRDLGYDLVDVELIMENQKWVLRVYIDHGKG-IGLDDCELVSNSLDQLL 65 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D + I Y LEVSSPG +RP+ +K DF+ + G V + + ++ GK++G + Sbjct: 66 DEHDPIPHSYVLEVSSPGAERPLKKKKDFVNFAGKKVQIKTYVKLDGRKNFKGKLLGLED 125 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 LE N ++ I D + A L++ Sbjct: 126 EHVVLET-------FNSGEVKIPLDKIAKANLLL 152 >gi|254490571|ref|ZP_05103757.1| conserved hypothetical protein [Methylophaga thiooxidans DMS010] gi|224464315|gb|EEF80578.1| conserved hypothetical protein [Methylophaga thiooxydans DMS010] Length = 148 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 M + + +I+ IE + + V + ++ + +L+I+++ + G + + DCE++S IS Sbjct: 1 MAITDQVEQLIEAPIESLGYELVGVEYIQGGPDAILRIYIDAEQG-IGIEDCEKVSHQIS 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE I Y LEVSSPG DRP+ + DF R+ G V + L ++ G + G Sbjct: 60 GVLDVEEPIRSAYMLEVSSPGFDRPLFKARDFERFAGAEVKISMKLPVQGRRNFTGVLQG 119 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 S+ +E + A+ L ARL+ Sbjct: 120 FSDGEVLIEVDGEIY--------ALPLAKLAKARLV 147 >gi|65321144|ref|ZP_00394103.1| COG0779: Uncharacterized protein conserved in bacteria [Bacillus anthracis str. A2012] Length = 174 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 46/163 (28%), Positives = 85/163 (52%), Gaps = 6/163 (3%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEEL 72 R+F D + + + QP++EE++ V + ++E + L++F++ + G + + +C + Sbjct: 16 RLFMDKKVTEVVEAFAQPIVEELNLELVDVEYVKEGQDWFLRVFIDSEKG-VDIEECGAV 74 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+ +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ Sbjct: 75 SERLSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMFE 134 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 GK++ T L + K +I I D + +ARL VT Sbjct: 135 GKMLSYDGTTITLLLTIKTRKK----EIQIPMDKVANARLAVT 173 >gi|254496139|ref|ZP_05109037.1| conserved hypothetical protein [Legionella drancourtii LLAP12] gi|254354626|gb|EET13263.1| conserved hypothetical protein [Legionella drancourtii LLAP12] Length = 147 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 47/155 (30%), Positives = 83/155 (53%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + ++ ++ P I +M + L + K+ LL+I++++ DG + + DC+++S +S + Sbjct: 2 IQDELEQLLAPTINDMGYELWGCEYLSQGKHSLLRIYIDKADG-IGIEDCQDVSHQVSAL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I G+Y LEVSSPGI RP+ + R+ G V + +K+KL+G I+ S Sbjct: 61 LDVEDPIPGNYSLEVSSPGIPRPLFYSWQYQRYIGQSVQIKTFKPVNNKRKLLGTIVSAS 120 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E L +N + F +++ A L V Sbjct: 121 ENSVVLN--------INGEDHELLFSNIVKAYLTV 147 >gi|90581551|ref|ZP_01237344.1| hypothetical protein VAS14_07344 [Vibrio angustum S14] gi|90437313|gb|EAS62511.1| hypothetical protein VAS14_07344 [Vibrio angustum S14] Length = 151 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 82/156 (52%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 L ++ +++P + + + V + + + L++F++ ++G + + DC E+S+ IS Sbjct: 2 TALETQLTEMLEPSVLALGYELVGLEFIRAGEHSTLRVFIDHENG-INVDDCAEVSRQIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++DVE+ I Y LEVSSPG++RP+ + + + ++ GH + ++ G+++K G I+ Sbjct: 61 AVMDVEDPITVAYNLEVSSPGLERPLFKAAHYQQFVGHEANIVLKMAMGNRRKWKGDIVA 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L+ + E + + ++ A L+ Sbjct: 121 VEGELITLKVDGNEE--------SFALSNISKANLV 148 >gi|229086369|ref|ZP_04218546.1| hypothetical protein bcere0022_29560 [Bacillus cereus Rock3-44] gi|228696981|gb|EEL49789.1| hypothetical protein bcere0022_29560 [Bacillus cereus Rock3-44] Length = 164 Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 86/163 (52%), Gaps = 6/163 (3%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEEL 72 R+F D + + + QP++EE++ V + ++E K+ L++F++ + G + + +C + Sbjct: 6 RLFMDKKVTEVVEAFAQPIVEELNLELVDVEYVKEGKDWFLRVFIDSEKG-VDIEECGAV 64 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+ +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ Sbjct: 65 SERLSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMFE 124 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 GK++ T L + K +I I D + +ARL VT Sbjct: 125 GKLLSYDGTTITLLLTIKTRKK----EIQIPMDKVANARLAVT 163 >gi|332290218|ref|YP_004421070.1| hypothetical protein UMN179_02160 [Gallibacterium anatis UMN179] gi|330433114|gb|AEC18173.1| hypothetical protein UMN179_02160 [Gallibacterium anatis UMN179] Length = 153 Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 79/154 (51%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 L + ++QP +E+M F + I +++++++++G +T+ DC ++S+ + I Sbjct: 4 LEQKLQDLLQPTVEDMGFELLGIECTRAGRYSTVRLYIDKENG-VTIDDCSDVSREVGAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ + + R+ G V + ++ ++K G ++ Sbjct: 63 LDVEDPISDKYNLEVSSPGLDRPLFTLAHYQRFVGEEVVIHLRIAMSGRRKWQGDLIKVD 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L E + + +F ++ A ++ Sbjct: 123 GDMITLNVEGQ--------EQVFAFSNIQKANIV 148 >gi|229577503|ref|YP_001178316.2| hypothetical protein Ent638_3607 [Enterobacter sp. 638] Length = 150 Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 75/153 (49%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I+ +E + + V I + + L+I+++ +DG + + DC ++S +S +L Sbjct: 4 LEQKLTEMIKAPVEALGYELVGIEFIRSRTSTLRIYIDSEDG-INVDDCADVSHQVSAVL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+ RPM + + G VA + ++ +++K G I Sbjct: 63 DVEDPITVAYNLEVSSPGLHRPMFTAEHYTHYIGEEVAVVLRMAVQNRRKWQGVIKAVDG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E + E + ++ A L+ Sbjct: 123 EMITVTVEGKDEV--------FALSNIQKANLV 147 >gi|114571579|ref|YP_758259.1| hypothetical protein Mmar10_3040 [Maricaulis maris MCS10] gi|122314890|sp|Q0AK72|RIMP_MARMM RecName: Full=Ribosome maturation factor rimP gi|114342041|gb|ABI67321.1| protein of unknown function DUF150 [Maricaulis maris MCS10] Length = 178 Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 53/171 (30%), Positives = 90/171 (52%), Gaps = 7/171 (4%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDG-NMTLRDCEELSQAISPIL 80 I ++ +PV E++ V++ ++ K LQI +R +G + + DC S+A+S + Sbjct: 8 DDRILALAEPVAAELALEVVRVRIMSGKRPRLQIMADRTNGTGIEVEDCARFSRALSEVF 67 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 +VE+ + G Y LEVSSPGIDRP+ F RW G+ V E+ + +++ G + G + Sbjct: 68 EVEDPVAGEYDLEVSSPGIDRPLTTLPHFERWEGNEVKIELDRLAEGRKRFRGILAGVED 127 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAG 191 L+ + + M I FD ++ A+L++TD L+ A L G A Sbjct: 128 GHVGLDMDGEDDTTM------IPFDWIVEAKLVLTDALIEADLKARGRGAA 172 >gi|188026374|ref|ZP_02961857.2| hypothetical protein PROSTU_03929 [Providencia stuartii ATCC 25827] gi|188020155|gb|EDU58195.1| hypothetical protein PROSTU_03929 [Providencia stuartii ATCC 25827] Length = 171 Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 79/158 (50%), Gaps = 9/158 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ +I +E + F V + + + L++F++ ++G +T+ DC ++S Sbjct: 20 VGLSTLEQKLTEMISAPVEALGFEFVGLEFVRARTSTLRVFIDSEEG-ITVDDCADVSHQ 78 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LE+SSPG++RP+ + + R+ G VA + ++ ++++ G I Sbjct: 79 VSAVLDVEDPISVVYNLEISSPGLERPLFTVAHYERFVGEEVALTLRIAMQNRRRWQGII 138 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + E + ++ A L+ Sbjct: 139 KAVEGEMITVTVDGKDEV--------FALGNIQKANLV 168 >gi|238896677|ref|YP_002921422.1| hypothetical protein KP1_4889 [Klebsiella pneumoniae NTUH-K2044] gi|238549004|dbj|BAH65355.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 154 Score = 182 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 76/158 (48%), Gaps = 9/158 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ ++ +E + F V I + + L+I+++ +DG + + DC ++S Sbjct: 3 VGLSTLEQKLTEMLTAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQ 61 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S ++DVE+ I Y LEVSS G+DRPM + R+ G VA + ++ +++K G I Sbjct: 62 VSAVMDVEDPITVAYNLEVSSLGLDRPMFTAEHYQRFTGEEVALVLRMAVQNRRKWQGII 121 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E + E + ++ A L+ Sbjct: 122 KAVDGEMITVTVEGKDEV--------FALSNIQKANLV 151 >gi|317129166|ref|YP_004095448.1| hypothetical protein Bcell_2460 [Bacillus cellulosilyticus DSM 2522] gi|315474114|gb|ADU30717.1| protein of unknown function DUF150 [Bacillus cellulosilyticus DSM 2522] Length = 154 Score = 182 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 42/157 (26%), Positives = 82/157 (52%), Gaps = 6/157 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M + ++ +++P++++MS V I +E KN L+++++R DG + L DC +S+ +S Sbjct: 1 MSIREEVEVLVEPILQQMSLELVDIEYKKEGKNWFLRVYIDR-DGGVDLDDCTAVSEQLS 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + I+ Y LEVSSPG +RP+ + D +R G + ++ GK+M Sbjct: 60 EALDKHDPIDQMYYLEVSSPGAERPLKTEQDIVRAVGKYINVTTYAPIDGEKVFEGKLMH 119 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ +E + + + + +D + ARL + Sbjct: 120 FNDGILSMETKVKTRVK----TVELPYDKIAKARLAI 152 >gi|228902320|ref|ZP_04066477.1| hypothetical protein bthur0014_34980 [Bacillus thuringiensis IBL 4222] gi|228909641|ref|ZP_04073464.1| hypothetical protein bthur0013_37930 [Bacillus thuringiensis IBL 200] gi|228940905|ref|ZP_04103464.1| hypothetical protein bthur0008_35450 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228966762|ref|ZP_04127806.1| hypothetical protein bthur0004_35680 [Bacillus thuringiensis serovar sotto str. T04001] gi|228973834|ref|ZP_04134410.1| hypothetical protein bthur0003_35890 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980423|ref|ZP_04140733.1| hypothetical protein bthur0002_35910 [Bacillus thuringiensis Bt407] gi|229098286|ref|ZP_04229233.1| hypothetical protein bcere0020_35200 [Bacillus cereus Rock3-29] gi|229104379|ref|ZP_04235048.1| hypothetical protein bcere0019_35270 [Bacillus cereus Rock3-28] gi|229117303|ref|ZP_04246681.1| hypothetical protein bcere0017_35830 [Bacillus cereus Rock1-3] gi|229162753|ref|ZP_04290710.1| hypothetical protein bcere0009_35230 [Bacillus cereus R309803] gi|228620635|gb|EEK77504.1| hypothetical protein bcere0009_35230 [Bacillus cereus R309803] gi|228666203|gb|EEL21667.1| hypothetical protein bcere0017_35830 [Bacillus cereus Rock1-3] gi|228679077|gb|EEL33285.1| hypothetical protein bcere0019_35270 [Bacillus cereus Rock3-28] gi|228685184|gb|EEL39115.1| hypothetical protein bcere0020_35200 [Bacillus cereus Rock3-29] gi|228779243|gb|EEM27500.1| hypothetical protein bthur0002_35910 [Bacillus thuringiensis Bt407] gi|228785859|gb|EEM33862.1| hypothetical protein bthur0003_35890 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228792861|gb|EEM40419.1| hypothetical protein bthur0004_35680 [Bacillus thuringiensis serovar sotto str. T04001] gi|228818741|gb|EEM64807.1| hypothetical protein bthur0008_35450 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228849930|gb|EEM94761.1| hypothetical protein bthur0013_37930 [Bacillus thuringiensis IBL 200] gi|228857289|gb|EEN01792.1| hypothetical protein bthur0014_34980 [Bacillus thuringiensis IBL 4222] Length = 164 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 46/163 (28%), Positives = 85/163 (52%), Gaps = 6/163 (3%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEEL 72 R+F D + + + QP++EE++ V + ++E + L++F++ + G + + +C + Sbjct: 6 RLFMDKKVTEVVEAFAQPIVEELNLELVDVEYVKEGQDWFLRVFIDSEKG-VDIEECGAV 64 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+ +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ Sbjct: 65 SERLSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMFE 124 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 GK++ T L + K +I I D + +ARL VT Sbjct: 125 GKLLSYDGTTITLLLTIKTRKK----EIQIPMDKVANARLAVT 163 >gi|229174483|ref|ZP_04302015.1| hypothetical protein bcere0006_35760 [Bacillus cereus MM3] gi|228609043|gb|EEK66333.1| hypothetical protein bcere0006_35760 [Bacillus cereus MM3] Length = 164 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 46/163 (28%), Positives = 85/163 (52%), Gaps = 6/163 (3%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEEL 72 R+F D + + + QP++EE++ V + ++E + L++F++ + G + + +C + Sbjct: 6 RLFMDKKVTEVVEAFAQPIVEELNLELVDVEYVQEGQDWFLRVFIDSEKG-VDIEECGAV 64 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+ +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ Sbjct: 65 SERLSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMFE 124 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 GK++ T L + K +I I D + +ARL VT Sbjct: 125 GKLLSYDGTTITLLLTIKTRKK----EIQIPMDKVANARLAVT 163 >gi|154686076|ref|YP_001421237.1| hypothetical protein RBAM_016430 [Bacillus amyloliquefaciens FZB42] gi|189038972|sp|A7Z4T0|RIMP_BACA2 RecName: Full=Ribosome maturation factor rimP gi|154351927|gb|ABS74006.1| YlxS [Bacillus amyloliquefaciens FZB42] Length = 156 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 82/156 (52%), Gaps = 6/156 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + + QP+++++ V I ++E N L++F++ ++G + + +C ++S+A+S Sbjct: 5 VTDTVQEMAQPILDDLQLELVDIEFVKEGQNWFLRVFIDSENG-VDIEECAKVSEALSEK 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + I +Y LEVSSPG +RP+ +K+DF + G V + + GK+ Sbjct: 64 LDEADPITQNYFLEVSSPGAERPLKKKADFEKSLGKNVYMKTYEPIDGLKVFEGKLAEFD 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +E + K ++ I ++ + +ARL VT Sbjct: 124 GQTVTIEMTVKTRKK----RVNIPYEKIANARLAVT 155 >gi|228992545|ref|ZP_04152472.1| hypothetical protein bpmyx0001_32850 [Bacillus pseudomycoides DSM 12442] gi|228998593|ref|ZP_04158180.1| hypothetical protein bmyco0003_31540 [Bacillus mycoides Rock3-17] gi|229006093|ref|ZP_04163781.1| hypothetical protein bmyco0002_30140 [Bacillus mycoides Rock1-4] gi|228755169|gb|EEM04526.1| hypothetical protein bmyco0002_30140 [Bacillus mycoides Rock1-4] gi|228761061|gb|EEM10020.1| hypothetical protein bmyco0003_31540 [Bacillus mycoides Rock3-17] gi|228767179|gb|EEM15815.1| hypothetical protein bpmyx0001_32850 [Bacillus pseudomycoides DSM 12442] Length = 164 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 47/165 (28%), Positives = 87/165 (52%), Gaps = 6/165 (3%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCE 70 E R+F D + + ++ QP++EE++ V + ++E K+ L++ ++ + G + + +C Sbjct: 4 ERRLFMDKKVTEVVEALAQPIVEELNLELVDVEYVKEGKDWFLRVSIDSETG-VDIEECG 62 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 +S+ +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ Sbjct: 63 AVSERLSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKM 122 Query: 131 LIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 GK++ T L + K +I I D + +ARL VT Sbjct: 123 FEGKLLSYDGTTITLLLTIKTRKK----EIQIPMDKVANARLAVT 163 >gi|229544432|ref|ZP_04433490.1| protein of unknown function DUF150 [Bacillus coagulans 36D1] gi|229324917|gb|EEN90594.1| protein of unknown function DUF150 [Bacillus coagulans 36D1] Length = 155 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 80/155 (51%), Gaps = 6/155 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + + PV+E + V I ++E KN L++++++++G + + +C +S+ + Sbjct: 4 VVEVVEQLASPVVEGLGLELVDIEYVKEGKNWFLRVYIDKENG-VDIEECGLVSERLGEK 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + I +Y LEVSSPG +RP+ + DF R G V + ++ GK++ Sbjct: 63 LDEVDPIPHNYFLEVSSPGAERPLKKARDFERAVGRTVLVKTYEPLDGEKTFQGKLIAFH 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 LE + + +K ++ I +D + +ARL V Sbjct: 123 NGCLTLECKVKTKK----IEKEIPYDKVANARLAV 153 >gi|269966858|ref|ZP_06180931.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269828525|gb|EEZ82786.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 151 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 79/156 (50%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ ++ + + V + + + L+I+++ ++G + + DC E+S +S Sbjct: 2 TGLERQLTEMLDAPVAASGYELVGLEFIRAGAHSTLRIYIDHENG-INVDDCAEVSHQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ +++K G I G Sbjct: 61 AVLDVEDPISVAYSLEVSSPGLERPLFKAAHYEQFIGHEVSIVLKMAVANRRKWKGIIHG 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + E + ++ A LI Sbjct: 121 VDGETVTITVDGQQE--------EFALSNISKANLI 148 >gi|83945004|ref|ZP_00957370.1| hypothetical protein OA2633_10254 [Oceanicaulis alexandrii HTCC2633] gi|83851786|gb|EAP89641.1| hypothetical protein OA2633_10254 [Oceanicaulis alexandrii HTCC2633] Length = 178 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 52/170 (30%), Positives = 84/170 (49%), Gaps = 6/170 (3%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 I + +P+ E + V++ ++ K +QI ER DG M + DC LS+A+S + D Sbjct: 8 DKRILEIAEPLAETLGLEIVRVRVMGGKKTTVQIMAERHDGTMVVEDCARLSRALSEVFD 67 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + + G Y LEVSSPGIDRP+ S F RW G E+ ++++ G + G + Sbjct: 68 EADPVSGEYDLEVSSPGIDRPLTALSHFERWEGFEAKIELDRLVENRKRFRGMLAGIEDD 127 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAG 191 ++ + I F+ + A+L++TD L+ ASL G G Sbjct: 128 NVLMDLAGE------DDTAVIPFEWIADAKLVMTDALVEASLKARGPIEG 171 >gi|303249648|ref|ZP_07335853.1| hypothetical protein APP6_1055 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303253713|ref|ZP_07339850.1| hypothetical protein APP2_0900 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247607|ref|ZP_07529650.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307252188|ref|ZP_07534086.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307256658|ref|ZP_07538437.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|302647438|gb|EFL77657.1| hypothetical protein APP2_0900 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302651460|gb|EFL81611.1| hypothetical protein APP6_1055 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306855877|gb|EFM88037.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306860332|gb|EFM92347.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306864706|gb|EFM96610.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 153 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + ++ IE M V I L ++++++++ G +T+ DC ++S+ +S I Sbjct: 4 LEQKLEELVSDTIESMGCELVGIECQRAGRFLTVRLYIDKE-GGVTIDDCSDVSRQVSAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ + R+ G V + + D++K GK+ Sbjct: 63 LDVEDPIADKYNLEVSSPGLDRPLFTLKHYQRFIGQEVVIHLRIPMFDRRKWQGKLESVE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + + +F ++ A L+ Sbjct: 123 GDLITLTVDNETRQ--------FAFGNIQKANLV 148 >gi|239826653|ref|YP_002949277.1| hypothetical protein GWCH70_1151 [Geobacillus sp. WCH70] gi|259585779|sp|C5D9C5|RIMP_GEOSW RecName: Full=Ribosome maturation factor rimP gi|239806946|gb|ACS24011.1| protein of unknown function DUF150 [Geobacillus sp. WCH70] Length = 157 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 42/151 (27%), Positives = 79/151 (52%), Gaps = 6/151 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ P++ +M V I ++E KN L++F++ D+G + + C +S+ +S LD Sbjct: 9 VEELVTPILADMDLELVDIEYVKEGKNWFLRVFIDSDNG-VDIEQCGMVSEKLSEKLDEV 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I +Y LEVSSPG +RP+ + DF + G V + +++ G+++G T Sbjct: 68 DPIPHNYFLEVSSPGAERPLKKPKDFTKAIGKNVYIKTYEPIEGEKEFEGELIGFDGTTV 127 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + K I I ++ + SARL V Sbjct: 128 SVTVKDKTRKK----TIDIPYEKVASARLAV 154 >gi|259586207|sp|A8G905|RIMP_SERP5 RecName: Full=Ribosome maturation factor rimP Length = 152 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 76/158 (48%), Gaps = 9/158 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ ++ +E + F V I + + L+I+++ ++G + + DC ++S Sbjct: 1 MGLSTLEQKLTEMLSAPVEALGFELVGIEFIRARQSTLRIYIDSENG-INVDDCADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE I Y LEVSSPG+DRPM + R+ G V+ + ++ +++K G I Sbjct: 60 VSAVLDVEEPITVAYNLEVSSPGLDRPMFTAEHYTRFLGDEVSLVLRMAVQNRRKWQGII 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E + E + ++ A L+ Sbjct: 120 KSVDGEMITVAVEGKDEV--------FALSNIQKANLV 149 >gi|192362188|ref|YP_001980957.1| BCR family protein [Cellvibrio japonicus Ueda107] gi|190688353|gb|ACE86031.1| Uncharacterized BCR, YhbC family [Cellvibrio japonicus Ueda107] Length = 196 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 44/161 (27%), Positives = 84/161 (52%), Gaps = 11/161 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQAISPILD 81 ++ +I PV+E + + L + L+IF++ G ++L DCE +S+ IS +LD Sbjct: 38 ERLTDLIVPVVESLGCELWGLEYLTQGRYTTLRIFIDGPQG-VSLDDCERVSRQISAVLD 96 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I+G Y LEVSSPG+DRP+ ++ + R+ G V + ++ +++ G I E Sbjct: 97 VEDPIDGEYTLEVSSPGLDRPLYTEAQYARYVGETVNLRLRIAVEGRRRFKGVISAIEEG 156 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT-DELLRA 181 L+ + + + + +++ L+ D++LR Sbjct: 157 ALLLQFDNQ--------TVRLPIETIDKGNLVPRYDDILRE 189 >gi|320540175|ref|ZP_08039830.1| putative conserved protein [Serratia symbiotica str. Tucson] gi|320029841|gb|EFW11865.1| putative conserved protein [Serratia symbiotica str. Tucson] Length = 156 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 75/153 (49%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ ++ +E + F V I + + L+I+++ ++G + + DC ++S +S +L Sbjct: 10 LEQKLTEMLLAPVEALGFEFVGIEFIRARQSTLRIYIDSENG-INVDDCADVSHQVSAVL 68 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE I Y LEVSSPG+DRPM + R+ G V+ + ++ +++K G I Sbjct: 69 DVEEPIAVAYNLEVSSPGLDRPMFTAEHYTRFLGEEVSLVLRMAVQNRRKWQGIIKSVEG 128 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + E + ++ A LI Sbjct: 129 EMITVTVDGKDEV--------FALSNIQKANLI 153 >gi|53729158|ref|ZP_00133985.2| COG0779: Uncharacterized protein conserved in bacteria [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208119|ref|YP_001053344.1| hypothetical protein APL_0637 [Actinobacillus pleuropneumoniae L20] gi|165976049|ref|YP_001651642.1| hypothetical protein APJL_0628 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149947|ref|YP_001968472.1| hypothetical protein APP7_0678 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307249836|ref|ZP_07531812.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307261094|ref|ZP_07542773.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307263275|ref|ZP_07544893.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|167016737|sp|A3N003|RIMP_ACTP2 RecName: Full=Ribosome maturation factor rimP gi|226707976|sp|B0BNR3|RIMP_ACTPJ RecName: Full=Ribosome maturation factor rimP gi|226708014|sp|B3H161|RIMP_ACTP7 RecName: Full=Ribosome maturation factor rimP gi|126096911|gb|ABN73739.1| hypothetical protein APL_0637 [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165876150|gb|ABY69198.1| hypothetical protein APJL_0628 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189915078|gb|ACE61330.1| hypothetical protein APP7_0678 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306858138|gb|EFM90218.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306869226|gb|EFN01024.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871337|gb|EFN03063.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 153 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 76/154 (49%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + ++ IE M F V I L ++++++++ G +T+ DC ++S+ +S I Sbjct: 4 LEQKLEELVSDTIESMGFELVGIECQRAGRFLTVRLYIDKE-GGVTIDDCSDVSRQVSAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ + + R+ G + + + D++K GK+ Sbjct: 63 LDVEDPIADKYNLEVSSPGLDRPLFTLAHYQRFIGQEIVIHLRIPMFDRRKWQGKLESVE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + + +F ++ A L+ Sbjct: 123 GDLITLTVDNETRQ--------FAFGNIQKANLV 148 >gi|209920647|ref|YP_002294731.1| hypothetical protein ECSE_3456 [Escherichia coli SE11] gi|215488488|ref|YP_002330919.1| hypothetical protein E2348C_3451 [Escherichia coli O127:H6 str. E2348/69] gi|253771994|ref|YP_003034825.1| hypothetical protein ECBD_0570 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|260845985|ref|YP_003223763.1| hypothetical protein ECO103_3919 [Escherichia coli O103:H2 str. 12009] gi|260857299|ref|YP_003231190.1| hypothetical protein ECO26_4276 [Escherichia coli O26:H11 str. 11368] gi|260869922|ref|YP_003236324.1| hypothetical protein ECO111_3994 [Escherichia coli O111:H- str. 11128] gi|261228182|ref|ZP_05942463.1| hypothetical protein EscherichiacoliO157_26753 [Escherichia coli O157:H7 str. FRIK2000] gi|261255038|ref|ZP_05947571.1| hypothetical protein EscherichiacoliO157EcO_04328 [Escherichia coli O157:H7 str. FRIK966] gi|297519523|ref|ZP_06937909.1| hypothetical protein EcolOP_17907 [Escherichia coli OP50] gi|300817578|ref|ZP_07097794.1| conserved hypothetical protein [Escherichia coli MS 107-1] gi|300823867|ref|ZP_07103991.1| conserved hypothetical protein [Escherichia coli MS 119-7] gi|300897934|ref|ZP_07116313.1| conserved hypothetical protein [Escherichia coli MS 198-1] gi|300904356|ref|ZP_07122209.1| hypothetical protein HMPREF9536_02438 [Escherichia coli MS 84-1] gi|300918925|ref|ZP_07135484.1| conserved hypothetical protein [Escherichia coli MS 115-1] gi|300926091|ref|ZP_07141909.1| hypothetical protein HMPREF9548_04117 [Escherichia coli MS 182-1] gi|300929860|ref|ZP_07145306.1| conserved hypothetical protein [Escherichia coli MS 187-1] gi|300938080|ref|ZP_07152858.1| conserved hypothetical protein [Escherichia coli MS 21-1] gi|300948820|ref|ZP_07162888.1| conserved hypothetical protein [Escherichia coli MS 116-1] gi|300955756|ref|ZP_07168101.1| hypothetical protein HMPREF9547_01616 [Escherichia coli MS 175-1] gi|300977837|ref|ZP_07174077.1| hypothetical protein HMPREF9553_01175 [Escherichia coli MS 200-1] gi|300990770|ref|ZP_07179342.1| conserved hypothetical protein [Escherichia coli MS 45-1] gi|301022025|ref|ZP_07185968.1| conserved hypothetical protein [Escherichia coli MS 69-1] gi|301025985|ref|ZP_07189467.1| conserved hypothetical protein [Escherichia coli MS 196-1] gi|301047987|ref|ZP_07195029.1| conserved hypothetical protein [Escherichia coli MS 185-1] gi|301301774|ref|ZP_07207908.1| hypothetical protein HMPREF9347_00334 [Escherichia coli MS 124-1] gi|301326407|ref|ZP_07219761.1| conserved hypothetical protein [Escherichia coli MS 78-1] gi|301644881|ref|ZP_07244853.1| conserved hypothetical protein [Escherichia coli MS 146-1] gi|306816486|ref|ZP_07450618.1| hypothetical protein ECNC101_07709 [Escherichia coli NC101] gi|307139857|ref|ZP_07499213.1| hypothetical protein EcolH7_17218 [Escherichia coli H736] gi|309785497|ref|ZP_07680128.1| conserved hypothetical protein [Shigella dysenteriae 1617] gi|309793748|ref|ZP_07688174.1| conserved hypothetical protein [Escherichia coli MS 145-7] gi|312972557|ref|ZP_07786730.1| conserved hypothetical protein [Escherichia coli 1827-70] gi|42143|emb|CAA25199.1| unnamed protein product [Escherichia coli] gi|169753506|gb|ACA76205.1| protein of unknown function DUF150 [Escherichia coli ATCC 8739] gi|209913906|dbj|BAG78980.1| conserved hypothetical protein [Escherichia coli SE11] gi|215266560|emb|CAS10999.1| predicted protein [Escherichia coli O127:H6 str. E2348/69] gi|253323038|gb|ACT27640.1| protein of unknown function DUF150 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|257755948|dbj|BAI27450.1| conserved predicted protein [Escherichia coli O26:H11 str. 11368] gi|257761132|dbj|BAI32629.1| conserved predicted protein [Escherichia coli O103:H2 str. 12009] gi|257766278|dbj|BAI37773.1| conserved predicted protein [Escherichia coli O111:H- str. 11128] gi|260447801|gb|ACX38223.1| protein of unknown function DUF150 [Escherichia coli DH1] gi|281180214|dbj|BAI56544.1| conserved hypothetical protein [Escherichia coli SE15] gi|284923194|emb|CBG36288.1| conserved hypothetical protein [Escherichia coli 042] gi|299879880|gb|EFI88091.1| conserved hypothetical protein [Escherichia coli MS 196-1] gi|300300130|gb|EFJ56515.1| conserved hypothetical protein [Escherichia coli MS 185-1] gi|300308214|gb|EFJ62734.1| hypothetical protein HMPREF9553_01175 [Escherichia coli MS 200-1] gi|300317389|gb|EFJ67173.1| hypothetical protein HMPREF9547_01616 [Escherichia coli MS 175-1] gi|300358364|gb|EFJ74234.1| conserved hypothetical protein [Escherichia coli MS 198-1] gi|300397740|gb|EFJ81278.1| conserved hypothetical protein [Escherichia coli MS 69-1] gi|300403707|gb|EFJ87245.1| hypothetical protein HMPREF9536_02438 [Escherichia coli MS 84-1] gi|300407078|gb|EFJ90616.1| conserved hypothetical protein [Escherichia coli MS 45-1] gi|300413951|gb|EFJ97261.1| conserved hypothetical protein [Escherichia coli MS 115-1] gi|300417856|gb|EFK01167.1| hypothetical protein HMPREF9548_04117 [Escherichia coli MS 182-1] gi|300451709|gb|EFK15329.1| conserved hypothetical protein [Escherichia coli MS 116-1] gi|300456940|gb|EFK20433.1| conserved hypothetical protein [Escherichia coli MS 21-1] gi|300462222|gb|EFK25715.1| conserved hypothetical protein [Escherichia coli MS 187-1] gi|300523635|gb|EFK44704.1| conserved hypothetical protein [Escherichia coli MS 119-7] gi|300529876|gb|EFK50938.1| conserved hypothetical protein [Escherichia coli MS 107-1] gi|300842755|gb|EFK70515.1| hypothetical protein HMPREF9347_00334 [Escherichia coli MS 124-1] gi|300846896|gb|EFK74656.1| conserved hypothetical protein [Escherichia coli MS 78-1] gi|301076826|gb|EFK91632.1| conserved hypothetical protein [Escherichia coli MS 146-1] gi|305850051|gb|EFM50510.1| hypothetical protein ECNC101_07709 [Escherichia coli NC101] gi|307625229|gb|ADN69533.1| hypothetical protein UM146_00520 [Escherichia coli UM146] gi|308122705|gb|EFO59967.1| conserved hypothetical protein [Escherichia coli MS 145-7] gi|308926617|gb|EFP72093.1| conserved hypothetical protein [Shigella dysenteriae 1617] gi|310332499|gb|EFP99712.1| conserved hypothetical protein [Escherichia coli 1827-70] gi|312947729|gb|ADR28556.1| hypothetical protein NRG857_15730 [Escherichia coli O83:H1 str. NRG 857C] gi|315062478|gb|ADT76805.1| conserved hypothetical protein [Escherichia coli W] gi|315257096|gb|EFU37064.1| 15 kDa protein [Escherichia coli MS 85-1] gi|315288928|gb|EFU48326.1| conserved hypothetical protein [Escherichia coli MS 110-3] gi|315294915|gb|EFU54254.1| conserved hypothetical protein [Escherichia coli MS 153-1] gi|315297878|gb|EFU57148.1| conserved hypothetical protein [Escherichia coli MS 16-3] gi|320175534|gb|EFW50630.1| hypothetical protein SDB_01982 [Shigella dysenteriae CDC 74-1112] gi|320189524|gb|EFW64183.1| hypothetical protein ECoD_04531 [Escherichia coli O157:H7 str. EC1212] gi|320202084|gb|EFW76659.1| hypothetical protein ECoL_00712 [Escherichia coli EC4100B] gi|320640242|gb|EFX09814.1| ribosome maturation protein RimP [Escherichia coli O157:H7 str. G5101] gi|320645539|gb|EFX14548.1| ribosome maturation protein RimP [Escherichia coli O157:H- str. 493-89] gi|320650849|gb|EFX19306.1| ribosome maturation protein RimP [Escherichia coli O157:H- str. H 2687] gi|320656230|gb|EFX24142.1| ribosome maturation protein RimP [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661920|gb|EFX29328.1| ribosome maturation protein RimP [Escherichia coli O55:H7 str. USDA 5905] gi|320666755|gb|EFX33734.1| ribosome maturation protein RimP [Escherichia coli O157:H7 str. LSU-61] gi|323154384|gb|EFZ40585.1| hypothetical protein ECEPECA14_3686 [Escherichia coli EPECa14] gi|323173569|gb|EFZ59198.1| hypothetical protein ECLT68_1886 [Escherichia coli LT-68] gi|323178883|gb|EFZ64459.1| hypothetical protein ECOK1180_2616 [Escherichia coli 1180] gi|323183125|gb|EFZ68523.1| hypothetical protein ECOK1357_3540 [Escherichia coli 1357] gi|324008769|gb|EGB77988.1| hypothetical protein HMPREF9532_01528 [Escherichia coli MS 57-2] gi|324012104|gb|EGB81323.1| hypothetical protein HMPREF9533_03857 [Escherichia coli MS 60-1] gi|324018306|gb|EGB87525.1| hypothetical protein HMPREF9542_03022 [Escherichia coli MS 117-3] gi|326337872|gb|EGD61706.1| hypothetical protein ECF_05498 [Escherichia coli O157:H7 str. 1125] gi|326347441|gb|EGD71166.1| hypothetical protein ECoA_00752 [Escherichia coli O157:H7 str. 1044] gi|330909226|gb|EGH37740.1| clustered with transcription termination protein NusA [Escherichia coli AA86] gi|332086489|gb|EGI91636.1| hypothetical protein SD15574_3713 [Shigella dysenteriae 155-74] gi|332345127|gb|AEE58461.1| conserved hypothetical protein [Escherichia coli UMNK88] gi|332754726|gb|EGJ85092.1| hypothetical protein SF274771_3795 [Shigella flexneri 2747-71] gi|332765167|gb|EGJ95394.1| ribosome maturation protein [Shigella flexneri 2930-71] gi|332998812|gb|EGK18408.1| hypothetical protein SFVA6_4094 [Shigella flexneri VA-6] gi|332999249|gb|EGK18835.1| hypothetical protein SFK272_3978 [Shigella flexneri K-272] gi|333000398|gb|EGK19981.1| hypothetical protein SFK218_4200 [Shigella flexneri K-218] gi|333014539|gb|EGK33886.1| hypothetical protein SFK304_4023 [Shigella flexneri K-304] Length = 140 Score = 181 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 39/146 (26%), Positives = 72/146 (49%), Gaps = 9/146 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I +E + F V I + + L+I+++ +DG + + DC ++S +S +LDVE+ I Sbjct: 1 MITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVEDPIT 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LEVSSPG+DRP+ + R+ G V + ++ +++K G I + Sbjct: 60 VAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTV 119 Query: 148 EKRGEKDMNELQIAISFDSLLSARLI 173 E + E + ++ A L+ Sbjct: 120 EGKDEV--------FALSNIQKANLV 137 >gi|320186659|gb|EFW61383.1| hypothetical protein SGF_01107 [Shigella flexneri CDC 796-83] gi|332090719|gb|EGI95813.1| hypothetical protein SB359474_3714 [Shigella boydii 3594-74] Length = 140 Score = 181 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 39/146 (26%), Positives = 71/146 (48%), Gaps = 9/146 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I +E + F V I + L+I+++ +DG + + DC ++S +S +LDVE+ I Sbjct: 1 MITAPVEALGFELVGIEFIRGHTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVEDPIT 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LEVSSPG+DRP+ + R+ G V + ++ +++K G I + Sbjct: 60 VAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTV 119 Query: 148 EKRGEKDMNELQIAISFDSLLSARLI 173 E + E + ++ A L+ Sbjct: 120 EGKDEV--------FALSNIQKANLV 137 >gi|261342616|ref|ZP_05970474.1| hypothetical protein ENTCAN_09187 [Enterobacter cancerogenus ATCC 35316] gi|296104884|ref|YP_003615030.1| YhbC-like protein [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|288315264|gb|EFC54202.1| hypothetical protein ENTCAN_09187 [Enterobacter cancerogenus ATCC 35316] gi|295059343|gb|ADF64081.1| YhbC-like protein [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 140 Score = 181 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 40/146 (27%), Positives = 74/146 (50%), Gaps = 9/146 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I +E + + V I + + L+I+++ +DG + + DC ++S +S +LDVE+ I Sbjct: 1 MITAPVEALGYELVGIEFVRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVEDPIT 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LEVSSPG+DRPM ++R+ G VA + ++ +++K G I + Sbjct: 60 VAYNLEVSSPGLDRPMFTAEHYVRFTGEEVALVLRMAVQNRRKWQGIIKAVDGEMITVTV 119 Query: 148 EKRGEKDMNELQIAISFDSLLSARLI 173 E + E + ++ A L+ Sbjct: 120 EGKDEV--------FALSNIQKANLV 137 >gi|209966174|ref|YP_002299089.1| hypothetical protein RC1_2909 [Rhodospirillum centenum SW] gi|259586184|sp|B6IVF3|RIMP_RHOCS RecName: Full=Ribosome maturation factor rimP gi|209959640|gb|ACJ00277.1| conserved hypothetical protein [Rhodospirillum centenum SW] Length = 252 Score = 181 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 58/181 (32%), Positives = 85/181 (46%), Gaps = 20/181 (11%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-MTLRDCEELSQAIS 77 M I +I+P +E M + V++ L + LQI ER DG MT+ DC ++S+A+S Sbjct: 1 MEAVERIGRIIEPSVEAMGYELVRVQLSGGQRPTLQIMAERSDGAAMTVEDCADISRAVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ + G Y LEVSSPGIDRP+ R DF R+ G E +++ G + G Sbjct: 61 ALLDVEDPLPGAYTLEVSSPGIDRPLTRLKDFERFAGFEARLETKAPVDGRKRFRGFLAG 120 Query: 138 TSETGFFLEKEKRGEKDMNELQ-------------------IAISFDSLLSARLIVTDEL 178 + L + + I F +L A+L +TDEL Sbjct: 121 IEDDAVRLALPVEKKARKGAKAAPTRDAADAGEAGDAEATLVVIPFGLVLKAKLELTDEL 180 Query: 179 L 179 L Sbjct: 181 L 181 >gi|229061420|ref|ZP_04198765.1| hypothetical protein bcere0026_35060 [Bacillus cereus AH603] gi|229134624|ref|ZP_04263434.1| hypothetical protein bcere0014_35330 [Bacillus cereus BDRD-ST196] gi|228648885|gb|EEL04910.1| hypothetical protein bcere0014_35330 [Bacillus cereus BDRD-ST196] gi|228717843|gb|EEL69491.1| hypothetical protein bcere0026_35060 [Bacillus cereus AH603] Length = 164 Score = 181 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 45/163 (27%), Positives = 84/163 (51%), Gaps = 6/163 (3%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEEL 72 R+F D + + + QP++EE++ V + ++E + L++F++ + G + + +C + Sbjct: 6 RLFMDKKVTEIVEAFAQPIVEELNLELVDVEYVQEGQDWFLRVFIDSEKG-VEIEECGAV 64 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+ +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ Sbjct: 65 SERLSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYKPIDGEKMFE 124 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 GK++ L + K +I I D + +ARL VT Sbjct: 125 GKLLSYDGNTITLLLTIKTRKK----EIQIPMDKVANARLAVT 163 >gi|170717518|ref|YP_001784610.1| hypothetical protein HSM_1288 [Haemophilus somnus 2336] gi|226695902|sp|B0UU11|RIMP_HAES2 RecName: Full=Ribosome maturation factor rimP gi|168825647|gb|ACA31018.1| protein of unknown function DUF150 [Haemophilus somnus 2336] Length = 153 Score = 181 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 76/154 (49%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQAISPI 79 L + ++QP +E++ I +++++++ DG +T+ DC ++S+ +S + Sbjct: 4 LEDKLQELLQPSVEDLGCELWGIECQRSGRFFTVRLYIDKKDGGVTVDDCADVSRQVSAV 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG++RP+ F + G ++ + + D++K GK+ Sbjct: 64 LDVEDPIADKYNLEVSSPGLNRPLFTLKQFENYIGQDISVHLRVPMFDRRKWQGKLEKIE 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + + + + F ++ A ++ Sbjct: 124 NDMLTLIVDNQPQV--------LVFGNIQKANVV 149 >gi|319790653|ref|YP_004152286.1| protein of unknown function DUF150 [Thermovibrio ammonificans HB-1] gi|317115155|gb|ADU97645.1| protein of unknown function DUF150 [Thermovibrio ammonificans HB-1] Length = 162 Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats. Identities = 48/153 (31%), Positives = 83/153 (54%), Gaps = 7/153 (4%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + ++ P++EE F V + +E +L+I+ +R G +T+ DC+ +S+ I + Sbjct: 8 VIDKVKELLAPILEEGGFELVDVEFQKEPVGWVLRIYADRPQGGITISDCQWISERIGTL 67 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE++I Y LEVSSPG+DRP+ + DF R G VV + +++ G ++ TS Sbjct: 68 LDVEDVIPHAYHLEVSSPGLDRPLKTQRDFERHRGVVVKIKTHEPMDNQRNFKGAVVSTS 127 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 E G + R + I +D++ SAR+ Sbjct: 128 ERGVTVHDVSR------NADVEIPYDNIKSARV 154 >gi|295097659|emb|CBK86749.1| Uncharacterized protein conserved in bacteria [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 140 Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats. Identities = 40/146 (27%), Positives = 74/146 (50%), Gaps = 9/146 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I +E + + V I + + L+I+++ +DG + + DC ++S +S +LDVE+ I Sbjct: 1 MITAPVEALGYELVGIEFVRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVEDPIT 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LEVSSPG+DRPM ++R+ G VA + ++ +++K G I + Sbjct: 60 VAYNLEVSSPGLDRPMFTDEHYVRFTGEEVALVLRMAVQNRRKWQGIIKAVDGEMITVTV 119 Query: 148 EKRGEKDMNELQIAISFDSLLSARLI 173 E + E + ++ A L+ Sbjct: 120 EGKDEV--------FALSNIQKANLV 137 >gi|229593539|ref|YP_001476723.2| hypothetical protein Spro_0487 [Serratia proteamaculans 568] Length = 150 Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 75/153 (49%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ ++ +E + F V I + + L+I+++ ++G + + DC ++S +S +L Sbjct: 4 LEQKLTEMLSAPVEALGFELVGIEFIRARQSTLRIYIDSENG-INVDDCADVSHQVSAVL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE I Y LEVSSPG+DRPM + R+ G V+ + ++ +++K G I Sbjct: 63 DVEEPITVAYNLEVSSPGLDRPMFTAEHYTRFLGDEVSLVLRMAVQNRRKWQGIIKSVDG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E + E + ++ A L+ Sbjct: 123 EMITVAVEGKDEV--------FALSNIQKANLV 147 >gi|58040012|ref|YP_191976.1| hypothetical protein GOX1579 [Gluconobacter oxydans 621H] gi|81351770|sp|Q5FQM6|RIMP_GLUOX RecName: Full=Ribosome maturation factor rimP gi|58002426|gb|AAW61320.1| Hypothetical protein associated with nus operon [Gluconobacter oxydans 621H] Length = 203 Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats. Identities = 53/183 (28%), Positives = 93/183 (50%), Gaps = 11/183 (6%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 M + P + GL I+ I P + ++ + V++S+L +QI +R Sbjct: 1 MSQQNASSDIELPHL---TGLEARIAERIAPTLADLGYELVRLSVLGRDTPTIQIMADRA 57 Query: 61 DGN-MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVAC 119 +G+ +++ DCE++S A ILDV++ I G + LEVSS GIDRP+ R D+ R+ GH+ Sbjct: 58 NGSLISVEDCEQISHAAGAILDVDDPIPGAWMLEVSSAGIDRPLTRAKDWERFAGHLAKA 117 Query: 120 EIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELL 179 E+ + +++ G +MG + + + E + + ARL++TD L+ Sbjct: 118 ELDVPLNGRRRFSGTVMGARDGNAIIRLDDGTEA-------VLPLVDIRKARLVLTDALI 170 Query: 180 RAS 182 AS Sbjct: 171 EAS 173 >gi|307245493|ref|ZP_07527580.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254447|ref|ZP_07536284.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258906|ref|ZP_07540637.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853552|gb|EFM85770.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862588|gb|EFM94545.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866930|gb|EFM98787.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 153 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 40/154 (25%), Positives = 75/154 (48%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + ++ IE M V I L ++++++++ G +T+ DC ++S+ +S I Sbjct: 4 LEQKLEELVSDTIESMGCELVGIECQRAGRFLTVRLYIDKE-GGVTIDDCSDVSRQVSAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ + + R+ G + + + D++K GK+ Sbjct: 63 LDVEDPIADKYNLEVSSPGLDRPLFTLAHYQRFIGQEIVIHLRIPMFDRRKWQGKLESVE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + + +F ++ A L+ Sbjct: 123 GDLITLTVDNEARQ--------FAFGNIQKANLV 148 >gi|229168556|ref|ZP_04296279.1| hypothetical protein bcere0007_35130 [Bacillus cereus AH621] gi|228614962|gb|EEK72064.1| hypothetical protein bcere0007_35130 [Bacillus cereus AH621] Length = 164 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 46/163 (28%), Positives = 85/163 (52%), Gaps = 6/163 (3%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEEL 72 R+F D + + + QP++EE++ V + ++E + L++F++ + G + + +C + Sbjct: 6 RLFMDKKVTEIVEAFAQPIVEELNLELVDVEYVQEGQDWFLRVFIDSEKG-VEIEECGAV 64 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+ +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ Sbjct: 65 SERLSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYKPIDGEKMFE 124 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 GK++ T L + K +I I D + +ARL VT Sbjct: 125 GKLLSYDGTTITLLLTIKTRKK----EIQIPMDKVANARLAVT 163 >gi|78485465|ref|YP_391390.1| hypothetical protein Tcr_1121 [Thiomicrospira crunogena XCL-2] gi|91207998|sp|Q31GK7|RIMP_THICR RecName: Full=Ribosome maturation factor rimP gi|78363751|gb|ABB41716.1| conserved hypothetical protein with DUF150 domain [Thiomicrospira crunogena XCL-2] Length = 151 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 43/156 (27%), Positives = 77/156 (49%), Gaps = 9/156 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M L I ++++P IE M F+ L K+ L+I++++D+ +T+ DC ++S+ +S Sbjct: 1 MTLEDKIENLLRPTIETMGFQFWGCEYLPAGKHSTLRIYIDKDEVGVTVDDCGKVSRQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 I+DVE+ I Y LEVSSPG+DRP+ + + G V +++ G + Sbjct: 61 AIMDVEDPISNAYMLEVSSPGMDRPLFHPEQYKAYEGQEVQVRTSSPVMGRKRFKGVMSQ 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 SE+ +E + I F + A ++ Sbjct: 121 VSESDIAVEVDGELY--------EIPFSLIDKANVV 148 >gi|242240751|ref|YP_002988932.1| hypothetical protein Dd703_3348 [Dickeya dadantii Ech703] gi|242132808|gb|ACS87110.1| protein of unknown function DUF150 [Dickeya dadantii Ech703] Length = 140 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 38/146 (26%), Positives = 74/146 (50%), Gaps = 9/146 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I +E + + V I + + L+I+++ +DG +T+ DC ++S +S ++DVE+ I Sbjct: 1 MISAPVEALGYELVGIEFIRGRQSTLRIYIDSEDG-ITVDDCADVSHQVSAVMDVEDPIS 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LEVSSPG+DRP+ + R+ G V+ + ++ +++K G I + Sbjct: 60 VAYNLEVSSPGVDRPLFTAEHYERFTGEEVSLVLRMAVQNRRKWQGIIKSVEGEMITVTV 119 Query: 148 EKRGEKDMNELQIAISFDSLLSARLI 173 E + E + ++ A L+ Sbjct: 120 EGKDEV--------FALSNIQKANLV 137 >gi|33152525|ref|NP_873878.1| hypothetical protein HD1463 [Haemophilus ducreyi 35000HP] gi|51316788|sp|Q7VLI0|RIMP_HAEDU RecName: Full=Ribosome maturation factor rimP gi|33148748|gb|AAP96267.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP] Length = 154 Score = 181 bits (459), Expect = 5e-44, Method: Composition-based stats. Identities = 44/154 (28%), Positives = 77/154 (50%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ +I IE M + V + L ++++++++ G +T+ DC ++S+ +S I Sbjct: 4 LEQKLTVLISDTIESMGYELVGVECQHAGRFLTVRLYIDKE-GGVTIDDCSDVSRQVSAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 DVE+ I Y LEVSSPG+DRP+ + + R+ G + + + D++K GK+ Sbjct: 63 FDVEDPISDKYNLEVSSPGLDRPLFTLAHYARFVGREMVIHLRIPMFDRRKWQGKLTKVD 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 LE E GE F ++ A LI Sbjct: 123 GDLISLEIENNGEHQFI-------FSNIQKANLI 149 >gi|156975665|ref|YP_001446572.1| hypothetical protein VIBHAR_03398 [Vibrio harveyi ATCC BAA-1116] gi|166990836|sp|A7MUV0|RIMP_VIBHB RecName: Full=Ribosome maturation factor rimP gi|156527259|gb|ABU72345.1| hypothetical protein VIBHAR_03398 [Vibrio harveyi ATCC BAA-1116] Length = 151 Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 79/156 (50%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ +++ +E + V + + + L+I+++ ++G + + C E+S +S Sbjct: 2 TGLERQLTEMLEAPVEATGYELVGLEFIRAGAHSTLRIYIDHENG-INVDACAEVSHQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ +++K G I Sbjct: 61 AVLDVEDPISVAYSLEVSSPGLERPLFKAAHYEQFIGHEVSIVLKMAVANRRKWKGIIHS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E + E + ++ A LI Sbjct: 121 VDGETIAVTCEGQQE--------EFALSNISKANLI 148 >gi|283836284|ref|ZP_06356025.1| hypothetical protein CIT292_10732 [Citrobacter youngae ATCC 29220] gi|291067647|gb|EFE05756.1| hypothetical protein CIT292_10732 [Citrobacter youngae ATCC 29220] Length = 140 Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats. Identities = 37/146 (25%), Positives = 73/146 (50%), Gaps = 9/146 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I +E + + V I + + L+I+++ +DG + + DC ++S +S ++DVE+ I Sbjct: 1 MITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVMDVEDPIT 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LEVSSPG+DRP+ ++R+ G V + ++ +++K G I + Sbjct: 60 VAYNLEVSSPGLDRPLFTAEHYVRFLGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTV 119 Query: 148 EKRGEKDMNELQIAISFDSLLSARLI 173 E + E + ++ A L+ Sbjct: 120 EGKDEV--------FALSNIQKANLV 137 >gi|228916454|ref|ZP_04080020.1| hypothetical protein bthur0012_36690 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228928865|ref|ZP_04091897.1| hypothetical protein bthur0010_35570 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935131|ref|ZP_04097958.1| hypothetical protein bthur0009_35840 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947536|ref|ZP_04109826.1| hypothetical protein bthur0007_36640 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228986960|ref|ZP_04147086.1| hypothetical protein bthur0001_36350 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229092857|ref|ZP_04223991.1| hypothetical protein bcere0021_36040 [Bacillus cereus Rock3-42] gi|229123330|ref|ZP_04252534.1| hypothetical protein bcere0016_36190 [Bacillus cereus 95/8201] gi|229140458|ref|ZP_04269013.1| hypothetical protein bcere0013_35570 [Bacillus cereus BDRD-ST26] gi|229157393|ref|ZP_04285471.1| hypothetical protein bcere0010_35760 [Bacillus cereus ATCC 4342] gi|229186054|ref|ZP_04313224.1| hypothetical protein bcere0004_36010 [Bacillus cereus BGSC 6E1] gi|229197927|ref|ZP_04324643.1| hypothetical protein bcere0001_34630 [Bacillus cereus m1293] gi|228585645|gb|EEK43747.1| hypothetical protein bcere0001_34630 [Bacillus cereus m1293] gi|228597473|gb|EEK55123.1| hypothetical protein bcere0004_36010 [Bacillus cereus BGSC 6E1] gi|228626120|gb|EEK82869.1| hypothetical protein bcere0010_35760 [Bacillus cereus ATCC 4342] gi|228643019|gb|EEK99295.1| hypothetical protein bcere0013_35570 [Bacillus cereus BDRD-ST26] gi|228660106|gb|EEL15742.1| hypothetical protein bcere0016_36190 [Bacillus cereus 95/8201] gi|228690479|gb|EEL44262.1| hypothetical protein bcere0021_36040 [Bacillus cereus Rock3-42] gi|228772738|gb|EEM21178.1| hypothetical protein bthur0001_36350 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228812056|gb|EEM58387.1| hypothetical protein bthur0007_36640 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824496|gb|EEM70301.1| hypothetical protein bthur0009_35840 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830672|gb|EEM76277.1| hypothetical protein bthur0010_35570 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843033|gb|EEM88115.1| hypothetical protein bthur0012_36690 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 164 Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats. Identities = 46/163 (28%), Positives = 85/163 (52%), Gaps = 6/163 (3%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEEL 72 R+F D + + + QP++EE++ V + ++E + L++F++ + G + + +C + Sbjct: 6 RLFMDKKVTEVVEAFAQPIVEELNLELVDVEYVKEGQDWFLRVFIDSEKG-VDIEECGAV 64 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+ +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ Sbjct: 65 SERLSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMFE 124 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 GK++ T L + K +I I D + +ARL VT Sbjct: 125 GKMLSYDGTTITLLLTIKTRKK----EIQIPMDKVANARLAVT 163 >gi|270158100|ref|ZP_06186757.1| conserved hypothetical protein [Legionella longbeachae D-4968] gi|289163635|ref|YP_003453773.1| hypothetical protein LLO_0291 [Legionella longbeachae NSW150] gi|269990125|gb|EEZ96379.1| conserved hypothetical protein [Legionella longbeachae D-4968] gi|288856808|emb|CBJ10619.1| putative conserved hypothetical protein [Legionella longbeachae NSW150] Length = 147 Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats. Identities = 47/155 (30%), Positives = 83/155 (53%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + ++ ++ P I +M + L + ++ LL+I++++ DG +T+ DCE +S +S + Sbjct: 2 IQDELEHLLAPSIADMGYELWGCEYLSQGRHSLLRIYIDKSDG-ITIDDCEAVSHQVSAL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I G+Y LEVSSPGI RP+ + + R+ G V + K+KL+G ++ S Sbjct: 61 LDVEDPIHGNYSLEVSSPGIPRPLFKSWQYQRYLGQEVQVKTFKPVCGKRKLLGTLVSAS 120 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ET L + + F +++ A L V Sbjct: 121 ETSIVLNLGNEDQ--------ELLFSNIVKASLTV 147 >gi|94501386|ref|ZP_01307906.1| hypothetical protein RED65_04750 [Oceanobacter sp. RED65] gi|94426499|gb|EAT11487.1| hypothetical protein RED65_04750 [Oceanobacter sp. RED65] Length = 175 Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats. Identities = 44/156 (28%), Positives = 83/156 (53%), Gaps = 9/156 (5%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + ++QPV+E M + + + + K+ LL+IF++ ++G + + DC +S+ +S ++ Sbjct: 24 DQQLVELLQPVVEAMGYEFWGLEYIAKGKDSLLRIFIDGENG-VNVDDCAAVSRQVSGVM 82 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+DRP+ F R+ G V ++ + ++K GK++G + Sbjct: 83 DVEDPITSEYNLEVSSPGLDRPLFTLEHFERYVGEFVDIKLRYAFEGRRKFKGKLVGIED 142 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 + ++ + + DS+ A LI D Sbjct: 143 GEDIV-------VHVDNHEYLLPIDSIDKANLIYRD 171 >gi|227357077|ref|ZP_03841447.1| YhbC family protein [Proteus mirabilis ATCC 29906] gi|227162769|gb|EEI47732.1| YhbC family protein [Proteus mirabilis ATCC 29906] Length = 170 Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 82/158 (51%), Gaps = 9/158 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L +++++ +E + F V + + + L+I+++ ++G +T+ DC ++S Sbjct: 19 VGLSTLEQKLTAMVSAPVEALGFEFVGLEFIRGRVSTLRIYIDSEEG-ITVDDCADVSHQ 77 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I+ Y LE+SSPG++RP+ + + ++ G VA + ++ +++K G I Sbjct: 78 VSAVLDVEDPIQTFYNLEISSPGLERPLFTTTHYEQFIGEEVAVVLRIAMQNRRKWQGII 137 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + + E + ++ A L+ Sbjct: 138 KSVAGEMITVTVDGKDEV--------FALSNIQKANLV 167 >gi|197364150|ref|YP_002143787.1| hypothetical protein SSPA2946 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|207858538|ref|YP_002245189.1| hypothetical protein SEN3123 [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224585086|ref|YP_002638885.1| hypothetical protein SPC_3359 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238910083|ref|ZP_04653920.1| hypothetical protein SentesTe_02955 [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289825803|ref|ZP_06544971.1| hypothetical protein Salmonellentericaenterica_10351 [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25302491|pir||AB0902 conserved hypothetical protein STY3469 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16421847|gb|AAL22160.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16504356|emb|CAD07808.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29139176|gb|AAO70744.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56129477|gb|AAV78983.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|160867493|gb|ABX24116.1| hypothetical protein SARI_04336 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|161365658|gb|ABX69426.1| hypothetical protein SPAB_04100 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|197095627|emb|CAR61195.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|206710341|emb|CAR34699.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224469614|gb|ACN47444.1| hypothetical protein SPC_3359 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261248454|emb|CBG26291.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|301159838|emb|CBW19357.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914314|dbj|BAJ38288.1| hypothetical protein STMDT12_C33450 [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225972|gb|EFX51026.1| clustered with transcription termination protein NusA [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|332990146|gb|AEF09129.1| hypothetical protein STMUK_3272 [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 140 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 40/146 (27%), Positives = 73/146 (50%), Gaps = 9/146 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I +E + + V I + + L+I+++ +DG + + DC ++S +S +LDVE+ I Sbjct: 1 MITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVEDPIS 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LEVSSPG+DRPM + R+ G VA + ++ +++K G I + Sbjct: 60 VAYNLEVSSPGLDRPMFTADHYARFQGEEVALVLRMAVQNRRKWQGIIKAVDGEMITVTV 119 Query: 148 EKRGEKDMNELQIAISFDSLLSARLI 173 E + E + ++ A L+ Sbjct: 120 EGKDEV--------FALSNIQKANLV 137 >gi|212639525|ref|YP_002316045.1| hypothetical protein Aflv_1699 [Anoxybacillus flavithermus WK1] gi|212561005|gb|ACJ34060.1| Uncharacterized conserved protein, YhbC family [Anoxybacillus flavithermus WK1] Length = 200 Score = 180 bits (458), Expect = 7e-44, Method: Composition-based stats. Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 6/151 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ P++ M V I ++E KN L++F++ G + + C +S+ +S LD Sbjct: 52 VEELVTPIVTHMGLELVDIEYVKEGKNWFLRVFIDSPTG-IDIDQCGVVSEQLSEKLDEI 110 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I +Y LEVSSPG +RP+ + DF R G V + +++ G + Sbjct: 111 DPIPHNYFLEVSSPGAERPLKKARDFERAVGKNVYVKTYEPIDGQKEFEGLLTAFDGQT- 169 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + I I ++ + SARL V Sbjct: 170 ---VTVEVKVKTKKKTITIPYEKVASARLAV 197 >gi|52785643|ref|YP_091472.1| hypothetical protein BLi01884 [Bacillus licheniformis ATCC 14580] gi|52348145|gb|AAU40779.1| YlxS [Bacillus licheniformis ATCC 14580] Length = 166 Score = 180 bits (458), Expect = 7e-44, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 82/156 (52%), Gaps = 6/156 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 + +S ++QP+++ + V I ++E L++F++ DDG + + +C ++S+A+S Sbjct: 14 VIDTVSEMVQPILDNLQLELVDIEFVKEGQSWFLRVFIDSDDG-VDIEECAKVSEALSEK 72 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + I+ +Y LEVSSPG +RP+ +++DF++ G V + ++ G++ Sbjct: 73 LDEADPIKQNYFLEVSSPGAERPLKKEADFMKALGKNVYIKTYEPIEGNKEFEGELSAFD 132 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + + + I I +D + ARL V+ Sbjct: 133 GENVEVTVMIKTRRK----TINIPYDKVAKARLAVS 164 >gi|117618499|ref|YP_857796.1| 15 kDa protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559906|gb|ABK36854.1| 15 kDa protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 175 Score = 180 bits (458), Expect = 7e-44, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 80/161 (49%), Gaps = 10/161 (6%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEEL 72 R L ++ +++ + + F I + K+ L+++++ + G +++ +C E+ Sbjct: 20 RRVTLATLEQRLTDLLEAPVVALGFELWGIEFIRAGKHSTLRVYIDGEHG-VSVENCAEV 78 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S + I+DVE+ I Y LEVSSPG+DRP+ + + F ++ G A + +++ +++K Sbjct: 79 SHQVGAIMDVEDPITEEYYLEVSSPGLDRPLFKVAQFEKYVGQEAAVTLRMATNNRRKFK 138 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 G I L + + E ++F ++ A ++ Sbjct: 139 GVIKAVQGDMITLTVDGKDEV--------LAFTNIQKANIV 171 >gi|27365055|ref|NP_760583.1| ribosome maturation protein RimP [Vibrio vulnificus CMCP6] gi|37680894|ref|NP_935503.1| hypothetical protein VV2710 [Vibrio vulnificus YJ016] gi|320155439|ref|YP_004187818.1| clustered with transcription termination protein NusA [Vibrio vulnificus MO6-24/O] gi|34223112|sp|Q8DBW2|RIMP_VIBVU RecName: Full=Ribosome maturation factor rimP gi|51316954|sp|Q7MI07|RIMP_VIBVY RecName: Full=Ribosome maturation factor rimP gi|27361201|gb|AAO10110.1| clustered with transcription termination protein NusA [Vibrio vulnificus CMCP6] gi|37199643|dbj|BAC95474.1| conserved hypothetical protein [Vibrio vulnificus YJ016] gi|319930751|gb|ADV85615.1| clustered with transcription termination protein NusA [Vibrio vulnificus MO6-24/O] Length = 151 Score = 180 bits (458), Expect = 7e-44, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 79/156 (50%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ +++ + + V + + + L+I+++ ++G +T+ DC E+S +S Sbjct: 2 TGLERQLTEMLESAVVASGYELVGLEFIRAGEHSTLRIYIDHENG-ITVEDCAEVSHQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I Y LEVSSPG+DRP+ + + + ++ G V + ++ +++K G+I Sbjct: 61 AVLDVEDPISVAYSLEVSSPGLDRPLFKPAHYEQFIGQEVNVVLKMAVANRRKWKGEIHS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + + E + ++ A LI Sbjct: 121 VDGEAITLTVDGQQE--------EFALSNISKANLI 148 >gi|228922571|ref|ZP_04085871.1| hypothetical protein bthur0011_35560 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228960033|ref|ZP_04121697.1| hypothetical protein bthur0005_35040 [Bacillus thuringiensis serovar pakistani str. T13001] gi|229047503|ref|ZP_04193093.1| hypothetical protein bcere0027_34860 [Bacillus cereus AH676] gi|229071315|ref|ZP_04204538.1| hypothetical protein bcere0025_34880 [Bacillus cereus F65185] gi|229081072|ref|ZP_04213582.1| hypothetical protein bcere0023_37110 [Bacillus cereus Rock4-2] gi|229111288|ref|ZP_04240841.1| hypothetical protein bcere0018_35340 [Bacillus cereus Rock1-15] gi|229129093|ref|ZP_04258066.1| hypothetical protein bcere0015_35380 [Bacillus cereus BDRD-Cer4] gi|229146388|ref|ZP_04274759.1| hypothetical protein bcere0012_35310 [Bacillus cereus BDRD-ST24] gi|229152016|ref|ZP_04280211.1| hypothetical protein bcere0011_35560 [Bacillus cereus m1550] gi|229180093|ref|ZP_04307437.1| hypothetical protein bcere0005_34390 [Bacillus cereus 172560W] gi|228603302|gb|EEK60779.1| hypothetical protein bcere0005_34390 [Bacillus cereus 172560W] gi|228631365|gb|EEK87999.1| hypothetical protein bcere0011_35560 [Bacillus cereus m1550] gi|228637021|gb|EEK93480.1| hypothetical protein bcere0012_35310 [Bacillus cereus BDRD-ST24] gi|228654330|gb|EEL10195.1| hypothetical protein bcere0015_35380 [Bacillus cereus BDRD-Cer4] gi|228672064|gb|EEL27355.1| hypothetical protein bcere0018_35340 [Bacillus cereus Rock1-15] gi|228702116|gb|EEL54592.1| hypothetical protein bcere0023_37110 [Bacillus cereus Rock4-2] gi|228711769|gb|EEL63721.1| hypothetical protein bcere0025_34880 [Bacillus cereus F65185] gi|228723750|gb|EEL75105.1| hypothetical protein bcere0027_34860 [Bacillus cereus AH676] gi|228799549|gb|EEM46502.1| hypothetical protein bthur0005_35040 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228837000|gb|EEM82341.1| hypothetical protein bthur0011_35560 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 164 Score = 180 bits (458), Expect = 7e-44, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 86/163 (52%), Gaps = 6/163 (3%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEEL 72 R+F D + + + QP++EE++ V + ++E + L++F++ + G + + +C + Sbjct: 6 RLFMDKKVTEVVEAFAQPIVEELNLELVDVEYVKEGQDWFLRVFIDSEKG-VDIEECGAV 64 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+ +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ Sbjct: 65 SERLSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMFE 124 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 GK++ T L + K +I IS D + +ARL VT Sbjct: 125 GKLLSYDGTTITLLLTIKTRKK----EIQISMDKVANARLAVT 163 >gi|113460962|ref|YP_719029.1| hypothetical protein HS_0819 [Haemophilus somnus 129PT] gi|122945308|sp|Q0I3P7|RIMP_HAES1 RecName: Full=Ribosome maturation factor rimP gi|112823005|gb|ABI25094.1| conserved hypothetical protein [Haemophilus somnus 129PT] Length = 153 Score = 180 bits (458), Expect = 7e-44, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 76/154 (49%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQAISPI 79 L + ++QP +E++ I +++++++ DG +T+ DC ++S+ +S + Sbjct: 4 LEDKLQELLQPSVEDLGCELWGIECQRSGRFFTVRLYIDKKDGGVTVDDCADVSRQVSAV 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG++RP+ F + G ++ + + D++K GK+ Sbjct: 64 LDVEDPIADKYNLEVSSPGLNRPLFTLKQFENYIGQDISVHLRVPMLDRRKWQGKLEKIE 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + + + + F ++ A ++ Sbjct: 124 NDMLTLIVDNQPQV--------LVFGNIQKANVV 149 >gi|308173622|ref|YP_003920327.1| RNA-binding protein [Bacillus amyloliquefaciens DSM 7] gi|307606486|emb|CBI42857.1| putative RNA-binding protein [Bacillus amyloliquefaciens DSM 7] gi|328553446|gb|AEB23938.1| ribosome maturation protein RimP [Bacillus amyloliquefaciens TA208] gi|328911763|gb|AEB63359.1| putative RNA-binding protein [Bacillus amyloliquefaciens LL3] Length = 156 Score = 180 bits (458), Expect = 7e-44, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 82/156 (52%), Gaps = 6/156 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + + QP+++++ V I ++E N L++F++ D+G + + +C ++S+A+S Sbjct: 5 VTDTVQEMAQPILDDLQLELVDIEFVKEGQNWFLRVFIDSDNG-VDIEECAKVSEALSEK 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + I +Y LEVSSPG +RP+ +K+DF + G V + + GK+ Sbjct: 64 LDEADPITQNYFLEVSSPGAERPLKKKADFEKSLGKNVYMKTYEPIDGLKVFEGKLAEFD 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +E + K ++ I ++ + +ARL VT Sbjct: 124 GQTATIEMTIKTRKK----RVNIPYEKIANARLAVT 155 >gi|260775411|ref|ZP_05884308.1| UPF0090 domain-containing protein [Vibrio coralliilyticus ATCC BAA-450] gi|260608592|gb|EEX34757.1| UPF0090 domain-containing protein [Vibrio coralliilyticus ATCC BAA-450] Length = 151 Score = 180 bits (458), Expect = 8e-44, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 81/156 (51%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ +++ + + V + + + L+IF++ ++G +++ DC E+S+ +S Sbjct: 2 TGLERQLTEMLEAPVAASGYELVGLEFIRAGEHSTLRIFIDHENG-ISVDDCAEVSRQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++DVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ G+++K G I Sbjct: 61 AVMDVEDPITVAYNLEVSSPGLERPLFKAAHYEQFIGHEVSIVLKMAVGNRRKWKGVIHA 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + E + ++ A LI Sbjct: 121 IEGETVTVTVDGNAE--------EFALSNISKANLI 148 >gi|54298758|ref|YP_125127.1| hypothetical protein lpp2822 [Legionella pneumophila str. Paris] gi|53752543|emb|CAH13975.1| hypothetical protein lpp2822 [Legionella pneumophila str. Paris] Length = 152 Score = 180 bits (458), Expect = 8e-44, Method: Composition-based stats. Identities = 50/161 (31%), Positives = 87/161 (54%), Gaps = 10/161 (6%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELS 73 +F + D+ +++P+I+ M + L + K+ LL+I++++ DG + + DC+E+S Sbjct: 1 MFIHTMINDDLIVLLEPIIKNMGYELWGCEYLSQGKHSLLRIYIDKPDG-IGIDDCQEVS 59 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 + +S +LDVE+ I GHY LE+SSPGI RP+ + R+ G+ + + K+KL G Sbjct: 60 KQVSAMLDVEDPIPGHYSLEISSPGIPRPLFSIWQYQRYLGYEIHVKTFKPVNGKRKLSG 119 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 I+ SE L D+N I +++ A L V Sbjct: 120 IIVSASEDTIVL--------DINNEHQEILLSNIVKANLTV 152 >gi|260771175|ref|ZP_05880102.1| UPF0090 domain-containing protein [Vibrio furnissii CIP 102972] gi|260613772|gb|EEX38964.1| UPF0090 domain-containing protein [Vibrio furnissii CIP 102972] gi|315179219|gb|ADT86133.1| hypothetical protein vfu_A00938 [Vibrio furnissii NCTC 11218] Length = 151 Score = 180 bits (458), Expect = 8e-44, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 84/156 (53%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ ++ + + V + + ++ L+I+++ ++G +T+ DC E+S +S Sbjct: 2 TGLERQLTEMLDAPVVASGYELVGLEFVRAGQHSTLRIYIDHENG-ITVDDCAEVSHQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ G+++K G+I+G Sbjct: 61 AVLDVEDPITVAYNLEVSSPGLERPLFKAAHYEQFKGHEVSIVLKMAVGNRRKWKGEILG 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + E + ++ A LI Sbjct: 121 ADGETINVMVDGQEE--------HFALSNISKANLI 148 >gi|229031447|ref|ZP_04187447.1| hypothetical protein bcere0028_35010 [Bacillus cereus AH1271] gi|228729736|gb|EEL80716.1| hypothetical protein bcere0028_35010 [Bacillus cereus AH1271] Length = 164 Score = 180 bits (458), Expect = 8e-44, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 86/163 (52%), Gaps = 6/163 (3%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEEL 72 R+F D + + + QP++EE++ V + ++E + L++F++ + G + + +C + Sbjct: 6 RLFMDKKVTEVVEAFAQPIVEELNLELVDVEYVQEGQDWFLRVFIDSEKG-VDIEECGAV 64 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+ +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ Sbjct: 65 SERLSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMFE 124 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 GK++ T L + K +I IS D + +ARL VT Sbjct: 125 GKLLSYDGTTITLLLTIKTRKK----EIQISMDKVANARLAVT 163 >gi|322615293|gb|EFY12214.1| hypothetical protein SEEM315_15045 [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618348|gb|EFY15239.1| hypothetical protein SEEM971_03440 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622847|gb|EFY19691.1| hypothetical protein SEEM973_09985 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626831|gb|EFY23628.1| hypothetical protein SEEM974_17064 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631400|gb|EFY28160.1| hypothetical protein SEEM201_11154 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635333|gb|EFY32047.1| hypothetical protein SEEM202_21223 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643468|gb|EFY40031.1| hypothetical protein SEEM954_03710 [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647096|gb|EFY43597.1| hypothetical protein SEEM054_06288 [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648899|gb|EFY45344.1| hypothetical protein SEEM675_09177 [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655091|gb|EFY51402.1| hypothetical protein SEEM965_16526 [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657694|gb|EFY53962.1| hypothetical protein SEEM19N_17226 [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664190|gb|EFY60388.1| hypothetical protein SEEM801_14392 [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667473|gb|EFY63635.1| hypothetical protein SEEM507_15450 [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674721|gb|EFY70813.1| hypothetical protein SEEM877_12264 [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675646|gb|EFY71719.1| hypothetical protein SEEM867_11084 [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682282|gb|EFY78305.1| hypothetical protein SEEM180_00717 [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684885|gb|EFY80883.1| hypothetical protein SEEM600_02779 [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323191868|gb|EFZ77116.1| hypothetical protein SEEM581_13996 [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199027|gb|EFZ84124.1| hypothetical protein SEEM501_06456 [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204273|gb|EFZ89282.1| hypothetical protein SEEM460_13042 [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207620|gb|EFZ92567.1| hypothetical protein SEEM020_13687 [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211327|gb|EFZ96171.1| hypothetical protein SEEM6152_16965 [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214731|gb|EFZ99480.1| hypothetical protein SEEM0077_18874 [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221211|gb|EGA05637.1| hypothetical protein SEEM0047_04951 [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224048|gb|EGA08341.1| hypothetical protein SEEM0055_21925 [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230303|gb|EGA14422.1| hypothetical protein SEEM0052_18579 [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233279|gb|EGA17373.1| hypothetical protein SEEM3312_09406 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239316|gb|EGA23366.1| hypothetical protein SEEM5258_06940 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242433|gb|EGA26459.1| hypothetical protein SEEM1156_15792 [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246943|gb|EGA30909.1| ribosome maturation protein RimP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254124|gb|EGA37944.1| ribosome maturation protein RimP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255241|gb|EGA39018.1| ribosome maturation protein RimP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262704|gb|EGA46260.1| hypothetical protein SEEM8284_03071 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264014|gb|EGA47522.1| ribosome maturation protein RimP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269400|gb|EGA52855.1| ribosome maturation protein RimP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 140 Score = 180 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 40/146 (27%), Positives = 73/146 (50%), Gaps = 9/146 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I +E + + V I + + L+I+++ +DG + + DC ++S +S +LDVE+ I Sbjct: 1 MITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVEDPIS 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LEVSSPG+DRPM + R+ G VA + ++ +++K G I + Sbjct: 60 VAYNLEVSSPGLDRPMFTADHYARFQGEEVALVLRMAVQNRRKWQGIIKAVDGKMITVTV 119 Query: 148 EKRGEKDMNELQIAISFDSLLSARLI 173 E + E + ++ A L+ Sbjct: 120 EGKDEV--------FALSNIQKANLV 137 >gi|253991504|ref|YP_003042860.1| hypothetical protein PAU_04031 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638382|emb|CAR67004.1| Conserved Hypothetical Protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782954|emb|CAQ86119.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 152 Score = 180 bits (457), Expect = 9e-44, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 80/158 (50%), Gaps = 9/158 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++++I +E + F V + + + L+I+++ ++G +T+ DC ++S Sbjct: 1 MGLSTLEQKLTAMISAPVEALGFELVGLEFIRARVSTLRIYIDSENG-ITVDDCADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LE+SSPG++RP+ + R+ G V+ + L+ +++K +G I Sbjct: 60 VSAVLDVEDPISVLYNLEISSPGLERPLFTAEHYQRFIGEEVSLVLRLAMQNRRKWLGVI 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + E + ++ A L+ Sbjct: 120 KTVDGEMITVTVDGKDEV--------FALSNIQKANLV 149 >gi|157085946|gb|ABV15624.1| hypothetical protein CKO_04571 [Citrobacter koseri ATCC BAA-895] Length = 140 Score = 180 bits (457), Expect = 9e-44, Method: Composition-based stats. Identities = 39/146 (26%), Positives = 72/146 (49%), Gaps = 9/146 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I +E + + V I + + L+I+++ +DG + + DC ++S +S +LDVE+ I Sbjct: 1 MITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVEDPIT 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LEVSSPG+DRPM + R+ G V + ++ +++K G I + Sbjct: 60 VAYNLEVSSPGLDRPMFTAEHYARFLGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTV 119 Query: 148 EKRGEKDMNELQIAISFDSLLSARLI 173 E + E + ++ A L+ Sbjct: 120 EGKDEV--------FALSNIQKANLV 137 >gi|237808992|ref|YP_002893432.1| hypothetical protein Tola_2248 [Tolumonas auensis DSM 9187] gi|259645129|sp|C4L8X6|RIMP_TOLAT RecName: Full=Ribosome maturation factor rimP gi|237501253|gb|ACQ93846.1| protein of unknown function DUF150 [Tolumonas auensis DSM 9187] Length = 152 Score = 180 bits (457), Expect = 9e-44, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 77/154 (50%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ ++ I + + I + K+ L+++++ +G +++ DC E S +S + Sbjct: 4 LEQRLTELLDAPIVALGYELWGIEFIRAGKHSTLRVYIDHANG-ISVDDCAEASHQVSAL 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+++ F R+ G V + ++ +++K G I Sbjct: 63 LDVEDPITTEYYLEVSSPGMDRPLLKPEHFARYIGQVATVTLRMAVNNRRKYKGTIKQVD 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + R E ++F ++ A LI Sbjct: 123 GEMITLTIDGRDEI--------LAFANIQQANLI 148 >gi|163802302|ref|ZP_02196196.1| hypothetical protein 1103602000417_AND4_14441 [Vibrio sp. AND4] gi|159173831|gb|EDP58645.1| hypothetical protein AND4_14441 [Vibrio sp. AND4] Length = 151 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 80/156 (51%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ +++ +E + + V + + + L+I+++ ++G + + C E+S +S Sbjct: 2 TGLERQLTEMLEAPVEALGYELVGLEFIRAGAHSTLRIYIDHENG-INVDACAEVSHQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ +++K G I Sbjct: 61 AVLDVEDPISVAYSLEVSSPGLERPLFKATHYEQFIGHEVSIVLKMAVANRRKWNGIIHN 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E + E + ++ A LI Sbjct: 121 VDGETIAVTCEGQQE--------EFALSNISKANLI 148 >gi|329997773|ref|ZP_08302912.1| hypothetical protein HMPREF9538_00552 [Klebsiella sp. MS 92-3] gi|150956943|gb|ABR78973.1| hypothetical protein KPN_03578 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|328538907|gb|EGF64968.1| hypothetical protein HMPREF9538_00552 [Klebsiella sp. MS 92-3] Length = 140 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 9/146 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 ++ +E + F V I + + L+I+++ +DG + + DC ++S +S ++DVE+ I Sbjct: 1 MLTAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVMDVEDPIT 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LEVSSPG+DRPM + R+ G VA + ++ +++K G I + Sbjct: 60 VAYNLEVSSPGLDRPMFTAEHYQRFTGEEVALVLRMAVQNRRKWQGIIKAVDGEMITVTV 119 Query: 148 EKRGEKDMNELQIAISFDSLLSARLI 173 E + E + ++ A L+ Sbjct: 120 EGKDEV--------FALSNIQKANLV 137 >gi|16078722|ref|NP_389541.1| hypothetical protein BSU16590 [Bacillus subtilis subsp. subtilis str. 168] gi|221309537|ref|ZP_03591384.1| hypothetical protein Bsubs1_09141 [Bacillus subtilis subsp. subtilis str. 168] gi|221313861|ref|ZP_03595666.1| hypothetical protein BsubsN3_09072 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318784|ref|ZP_03600078.1| hypothetical protein BsubsJ_09001 [Bacillus subtilis subsp. subtilis str. JH642] gi|221323056|ref|ZP_03604350.1| hypothetical protein BsubsS_09112 [Bacillus subtilis subsp. subtilis str. SMY] gi|321315426|ref|YP_004207713.1| ribosome maturation protein RimP [Bacillus subtilis BSn5] gi|418459|sp|P32726|RIMP_BACSU RecName: Full=Ribosome maturation factor rimP; AltName: Full=P15A gi|49315|emb|CAA79230.1| ORF1 [Bacillus subtilis subsp. subtilis str. 168] gi|2634031|emb|CAB13532.1| putative RNA-binding protein [Bacillus subtilis subsp. subtilis str. 168] gi|291484214|dbj|BAI85289.1| hypothetical protein BSNT_02698 [Bacillus subtilis subsp. natto BEST195] gi|320021700|gb|ADV96686.1| ribosome maturation protein RimP [Bacillus subtilis BSn5] Length = 156 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 80/156 (51%), Gaps = 6/156 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + + QP+++ + V I ++E L++F++ DDG + + +C ++S+A+S Sbjct: 5 VTDTVQEMAQPIVDSLQLELVDIEFVKEGQSWFLRVFIDSDDG-VDIEECAKVSEALSEK 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + I +Y LEVSSPG +RP+ +K+DF + G V + + G++ Sbjct: 64 LDEADPISQNYFLEVSSPGAERPLKKKADFEKSLGKNVYIKTYEPIDGVKVFEGELAEFD 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +E + K +I I ++ + +ARL VT Sbjct: 124 GQTVTVEITIKTRKK----RINIPYEKIANARLAVT 155 >gi|197335158|ref|YP_002155239.1| protein VV1_1694 [Vibrio fischeri MJ11] gi|226707621|sp|B5FA77|RIMP_VIBFM RecName: Full=Ribosome maturation factor rimP gi|197316648|gb|ACH66095.1| protein VV1_1694 [Vibrio fischeri MJ11] Length = 151 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 80/156 (51%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ +++ + + + V + + + L++F++ ++G + + DC E S+ IS Sbjct: 2 TGLERQLTEMLEAPVGALGYELVGLEFVRAGEHSTLRVFIDHENG-IFVEDCAEASRQIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++DVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + + +++K G I+ Sbjct: 61 AVMDVEDPITVAYNLEVSSPGLERPLFKAAHYQQFVGHEVSLVLKMPMNNRRKWKGDILE 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + E + ++ A L+ Sbjct: 121 VNGEIVTVTVDGNNE--------EFALSNISKANLV 148 >gi|220927906|ref|YP_002504815.1| hypothetical protein Ccel_0453 [Clostridium cellulolyticum H10] gi|254803925|sp|B8I6E3|RIMP_CLOCE RecName: Full=Ribosome maturation factor rimP gi|219998234|gb|ACL74835.1| protein of unknown function DUF150 [Clostridium cellulolyticum H10] Length = 152 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 82/144 (56%), Gaps = 3/144 (2%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISP 78 + ++ ++ PV+E +++ V I ++E N L++++++ G +++ DC+ +S+ +S Sbjct: 4 NIQQTVTELVSPVVESLNYELVDIEYVKEGANWYLRVYIDKP-GGISIDDCQAVSEQVSD 62 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LD ++ I+ Y LEVSSPG+DRP+ + DF ++ G +V ++ K+ G+++G Sbjct: 63 LLDKDDPIDQSYFLEVSSPGLDRPLKTEKDFAKYKGELVEVKVFQPIDGKKIFEGELVGL 122 Query: 139 SETGFFLEKEKRGEKDMNELQIAI 162 + + ++ ++AI Sbjct: 123 KDNIIVINQDGHN-VQFERDEVAI 145 >gi|149189796|ref|ZP_01868077.1| hypothetical protein VSAK1_11003 [Vibrio shilonii AK1] gi|148836445|gb|EDL53401.1| hypothetical protein VSAK1_11003 [Vibrio shilonii AK1] Length = 151 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 82/156 (52%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ +++ +E + + V + + + L+I+++ +DG +T+ C E+S +S Sbjct: 2 TGLERQLTELLEAPVEALGYELVGLEFIRAGEHSTLRIYIDHEDG-ITVDACAEVSHQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++DVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ G+++K G I Sbjct: 61 AVMDVEDPITVAYNLEVSSPGLERPLFKAAHYEQFIGHEVSIVLKMAVGNRRKWKGTIQS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + E ++ ++ A LI Sbjct: 121 IEGETVTIIVDGNEE--------EMALSNISKANLI 148 >gi|54295604|ref|YP_128019.1| hypothetical protein lpl2691 [Legionella pneumophila str. Lens] gi|53755436|emb|CAH16932.1| hypothetical protein lpl2691 [Legionella pneumophila str. Lens] Length = 152 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 49/161 (30%), Positives = 86/161 (53%), Gaps = 10/161 (6%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELS 73 +F + D+ +++P+I+ M + L + K+ LL+I++++ DG + + DC+E+S Sbjct: 1 MFIHTMINDDLIVLLEPIIKNMGYELWGCEYLSQGKHSLLRIYIDKPDG-IGIDDCQEVS 59 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 + +S +LDVE+ I GHY LE+SSPGI RP+ + R+ G+ + + K+KL G Sbjct: 60 KQVSAMLDVEDPIPGHYSLEISSPGIPRPLFSIWQYQRYLGYEIHVKTFKPVNGKRKLSG 119 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 I+ S L D+N I +++ A L V Sbjct: 120 IIVSASGDTIVL--------DINNEHQEILLSNIVKANLTV 152 >gi|323701862|ref|ZP_08113532.1| protein of unknown function DUF150 [Desulfotomaculum nigrificans DSM 574] gi|323533166|gb|EGB23035.1| protein of unknown function DUF150 [Desulfotomaculum nigrificans DSM 574] Length = 153 Score = 179 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 46/160 (28%), Positives = 82/160 (51%), Gaps = 10/160 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQ 74 + +++ I+P++EE V + ++E N L++F+++ G + L DC+ LS+ Sbjct: 1 MAKNSVVEKVTAAIEPIVEESKLELVNVEYVKEGGNWYLRVFIDKP-GGVDLDDCQMLSE 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 + +LD + I Y LEVSSPGI+RP+ + DF R+ GH+V + GK Sbjct: 60 KLDKLLDELDPIPQAYFLEVSSPGIERPLKKPEDFERFMGHLVNITTYTPIDGAKSFTGK 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + G +E G +E + + + I D + ++RL V Sbjct: 120 LQGYTEAGIEIEVKGK--------PMLIPHDRVATSRLAV 151 >gi|119944577|ref|YP_942257.1| hypothetical protein Ping_0815 [Psychromonas ingrahamii 37] gi|167016814|sp|A1ST43|RIMP_PSYIN RecName: Full=Ribosome maturation factor rimP gi|119863181|gb|ABM02658.1| hypothetical protein DUF150 [Psychromonas ingrahamii 37] Length = 153 Score = 179 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 82/155 (52%), Gaps = 10/155 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 L ++ ++ P +E++ + V + + K+ L++++++D+G + + DC +S+ +S Sbjct: 3 SLEERLTEMLAPSVEDLGYELVGVEYIRAGKHSTLRVYIDQDEG-ILVDDCAAVSRQVSA 61 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 I+DVE+ I Y LEVSSPG++RP+ + + + G V ++ + ++++ G I+ Sbjct: 62 IMDVEDPITNEYSLEVSSPGMNRPLFKAEHYQIFAGEEVKIQLRMPIQNRRRWKGVIVSA 121 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + L E R E+ S ++ A ++ Sbjct: 122 EDEIICLNIEGREER--------FSLSNIQKANIV 148 >gi|51316751|sp|Q7MYY5|RIMP_PHOLL RecName: Full=Ribosome maturation factor rimP gi|36787788|emb|CAE16903.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 152 Score = 179 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 80/158 (50%), Gaps = 9/158 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++++I +E + F V + + + L+I+++ ++G +T+ DC ++S Sbjct: 1 MGLSTLEQKLTAMISAPVEALGFELVGLEFIRARVSTLRIYIDSENG-ITVDDCADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LE+SSPG++RP+ + R+ G V+ + ++ +++K +G I Sbjct: 60 VSAVLDVEDPISVLYNLEISSPGLERPLFTTEHYQRFIGEEVSLVLRIAMQNRRKWLGII 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + E + ++ A L+ Sbjct: 120 KTVDGEMITVTVDGKDEV--------FALSNIQKANLV 149 >gi|322514416|ref|ZP_08067459.1| hypothetical protein HMPREF0027_1211 [Actinobacillus ureae ATCC 25976] gi|322119664|gb|EFX91722.1| hypothetical protein HMPREF0027_1211 [Actinobacillus ureae ATCC 25976] Length = 153 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + ++ IE M V I L ++++++++ G +T+ DC ++S+ +S I Sbjct: 4 LEQKLEELVSDTIESMGCELVGIECQRAGRFLTVRLYIDKE-GGVTIDDCSDVSRQVSAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ + R+ G V + + D++K GK+ Sbjct: 63 LDVEDPIADKYNLEVSSPGLDRPLFTLVHYQRFIGQEVVIHLCIPMFDRRKWQGKLESVE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + + +F ++ A L+ Sbjct: 123 GDLITLTVDNEARQ--------FAFGNIQKANLV 148 >gi|259585707|sp|Q0A795|RIMP_ALHEH RecName: Full=Ribosome maturation factor rimP Length = 152 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 47/154 (30%), Positives = 80/154 (51%), Gaps = 9/154 (5%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + ++I P++ M + V I LL+I+++ DG +TL DCE S+ IS +L Sbjct: 5 EDTLYALIDPLLTGMGYELVGIEYGGPAGKRLLRIYIDSPDG-ITLDDCETCSRQISAVL 63 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I G Y LE+SSPG+DRP+ + SD+ R+ G + + +++ G + G + Sbjct: 64 DVEDPIPGEYTLEISSPGLDRPIFKASDYDRFAGEQIKIRLSAPWEGRRRFKGVLAGLGD 123 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G + + ++ I D + ARLI+ Sbjct: 124 EGVRV-------VEAQGDEVQIPLDLIEKARLIL 150 >gi|295399849|ref|ZP_06809830.1| protein of unknown function DUF150 [Geobacillus thermoglucosidasius C56-YS93] gi|312111639|ref|YP_003989955.1| hypothetical protein GY4MC1_2648 [Geobacillus sp. Y4.1MC1] gi|294978252|gb|EFG53849.1| protein of unknown function DUF150 [Geobacillus thermoglucosidasius C56-YS93] gi|311216740|gb|ADP75344.1| protein of unknown function DUF150 [Geobacillus sp. Y4.1MC1] Length = 157 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 42/151 (27%), Positives = 78/151 (51%), Gaps = 6/151 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ P++ +M V I ++E KN L++F++ D+G + + C +S+ +S LD Sbjct: 9 VEELVTPILADMDLELVDIEYVKEGKNWFLRVFIDSDEG-VDIEQCGTVSEKLSEKLDEV 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I +Y LEVSSPG +RP+ + +DF R G V + +++ G++ G Sbjct: 68 DPIPHNYFLEVSSPGAERPLKKPADFTRAIGKHVYIKTYEPIEGEKEFEGELTGFDGKIV 127 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + K I I ++ + SARL V Sbjct: 128 SVTVKDKTRKK----TIDIPYEKVASARLAV 154 >gi|296330874|ref|ZP_06873349.1| hypothetical protein BSU6633_07236 [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674392|ref|YP_003866064.1| hypothetical protein BSUW23_08545 [Bacillus subtilis subsp. spizizenii str. W23] gi|296151879|gb|EFG92753.1| hypothetical protein BSU6633_07236 [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412636|gb|ADM37755.1| conserved hypothetical protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 156 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 80/156 (51%), Gaps = 6/156 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + + QP+++ + V I ++E L++F++ DDG + + +C ++S+A+S Sbjct: 5 VTDTVQEMAQPIVDSLQLELVDIEFVKEGQSWFLRVFIDSDDG-VDIEECAKVSEALSEK 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + I +Y LEVSSPG +RP+ +K+DF + G V + + G++ Sbjct: 64 LDEADPISQNYFLEVSSPGAERPLKKKADFEKSLGKNVYIKTYEPIEGVKVFEGELAEFD 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +E + K +I I ++ + +ARL VT Sbjct: 124 GQTVTVEITIKTRKK----RINIPYEKIANARLAVT 155 >gi|294634513|ref|ZP_06713048.1| hypothetical protein EDWATA_00308 [Edwardsiella tarda ATCC 23685] gi|291092027|gb|EFE24588.1| hypothetical protein EDWATA_00308 [Edwardsiella tarda ATCC 23685] Length = 140 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 37/146 (25%), Positives = 73/146 (50%), Gaps = 9/146 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I +E + F V I + ++ L+I+++ ++G +T+ DC ++S +S +LDVE+ I Sbjct: 1 MITAPVEALGFELVGIEFIRGRHSTLRIYIDSEEG-ITVDDCADVSHQVSAVLDVEDPIS 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LEVSSPG+DRP+ + R+ V + ++ +++K G I + Sbjct: 60 VAYNLEVSSPGMDRPLFTAEHYTRFLNEEVTLVLRMAMQNRRKWQGVIKAVDGEMITVTV 119 Query: 148 EKRGEKDMNELQIAISFDSLLSARLI 173 + + E + ++ A L+ Sbjct: 120 DGKDEV--------FALSNVQKANLV 137 >gi|229525294|ref|ZP_04414699.1| clustered with transcription termination protein NusA [Vibrio cholerae bv. albensis VL426] gi|229338875|gb|EEO03892.1| clustered with transcription termination protein NusA [Vibrio cholerae bv. albensis VL426] Length = 151 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 83/156 (53%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ +++ + + V + + ++ L+IF++ ++G +T+ DC E+S+ +S Sbjct: 2 TGLERQLTEMLEAPVVAAGYELVGLEFVRAGQHSTLRIFIDHENG-ITVEDCAEVSRQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ G+++K G I Sbjct: 61 AVLDVEDPISVVYNLEVSSPGLERPLFKAAHYEQFIGHEVSIVLKMAVGNRRKWKGIIQS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + E + ++ A LI Sbjct: 121 IDGETVVVMVDGQEE--------HFALSNISKANLI 148 >gi|89072573|ref|ZP_01159145.1| hypothetical protein SKA34_18649 [Photobacterium sp. SKA34] gi|89051677|gb|EAR57130.1| hypothetical protein SKA34_18649 [Photobacterium sp. SKA34] Length = 151 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 81/156 (51%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 L ++ +++P + + F V + + + L++F++ ++G + + C E+S+ IS Sbjct: 2 TALETQLTEMLEPSVLALGFELVGLEFIRAGEHSTLRVFIDHENG-INVDGCAEVSRQIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++DVE+ I Y LEVSSPG++RP+ + + + ++ GH + ++ G+++K G I+ Sbjct: 61 AVMDVEDPITVAYNLEVSSPGLERPLFKAAHYQQFVGHEANIVLKMAMGNRRKWKGDIVA 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L+ + E + + ++ A L+ Sbjct: 121 VEGELITLKVDGNEE--------SFALSNISKANLV 148 >gi|161579560|ref|NP_931695.2| hypothetical protein plu4531 [Photorhabdus luminescens subsp. laumondii TTO1] Length = 150 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 79/153 (51%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++++I +E + F V + + + L+I+++ ++G +T+ DC ++S +S +L Sbjct: 4 LEQKLTAMISAPVEALGFELVGLEFIRARVSTLRIYIDSENG-ITVDDCADVSHQVSAVL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LE+SSPG++RP+ + R+ G V+ + ++ +++K +G I Sbjct: 63 DVEDPISVLYNLEISSPGLERPLFTTEHYQRFIGEEVSLVLRIAMQNRRKWLGIIKTVDG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + E + ++ A L+ Sbjct: 123 EMITVTVDGKDEV--------FALSNIQKANLV 147 >gi|52842973|ref|YP_096772.1| hypothetical protein lpg2774 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|81376651|sp|Q5ZRV2|RIMP_LEGPH RecName: Full=Ribosome maturation factor rimP gi|91208410|sp|Q5X1C1|RIMP_LEGPA RecName: Full=Ribosome maturation factor rimP gi|259585808|sp|A5IHU9|RIMP_LEGPC RecName: Full=Ribosome maturation factor rimP gi|52630084|gb|AAU28825.1| hypothetical protein lpg2774 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 147 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 49/155 (31%), Positives = 85/155 (54%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + D+ +++P+I+ M + L + K+ LL+I++++ DG + + DC+E+S+ +S + Sbjct: 2 INDDLIVLLEPIIKNMGYELWGCEYLSQGKHSLLRIYIDKPDG-IGIDDCQEVSKQVSAM 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I GHY LE+SSPGI RP+ + R+ G+ + + K+KL G I+ S Sbjct: 61 LDVEDPIPGHYSLEISSPGIPRPLFSIWQYQRYLGYEIHVKTFKPVNGKRKLSGIIVSAS 120 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E L D+N I +++ A L V Sbjct: 121 EDTIVL--------DINNEHQEILLSNIVKANLTV 147 >gi|294500901|ref|YP_003564601.1| hypothetical protein BMQ_4155 [Bacillus megaterium QM B1551] gi|294350838|gb|ADE71167.1| conserved hypothetical protein [Bacillus megaterium QM B1551] Length = 156 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 77/156 (49%), Gaps = 6/156 (3%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + + ++ P++EEM+ V+I ++E K+ L++F++ D+G + + DC +S+ +S Sbjct: 4 NVKQTVEEMVSPILEEMNLELVEIEYVKEGKDWFLRVFIDSDNG-VDIEDCGAVSEKLSE 62 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +D + I +Y LEVSSPG +RP+ + DF R G V + ++ G++ Sbjct: 63 KMDAVDPIPHNYFLEVSSPGAERPLKKDKDFERAIGKHVYIKTYEPIEGAKEFEGELQSF 122 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L + + + +D + ARL + Sbjct: 123 DGETVTLSIRIKTRTK----TVVLPYDKVAFARLAI 154 >gi|59711091|ref|YP_203867.1| hypothetical protein VF_0484 [Vibrio fischeri ES114] gi|75354545|sp|Q5E7L7|RIMP_VIBF1 RecName: Full=Ribosome maturation factor rimP gi|59479192|gb|AAW84979.1| YhbC-like protein [Vibrio fischeri ES114] Length = 151 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 80/156 (51%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ +++ + + + V + + + L++F++ ++G + + DC E S+ IS Sbjct: 2 TGLERQLTEMLEAPVGALGYELVGLEFVRAGEHSTLRVFIDHENG-IFVEDCAEASRQIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++DVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + + +++K G I+ Sbjct: 61 AVMDVEDPITVAYNLEVSSPGLERPLFKAAHYQQFVGHEVSLVLKMPMNNRRKWKGDILE 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + E + ++ A L+ Sbjct: 121 INGEIVTVTVDGNNE--------EFALSNISKANLV 148 >gi|261253852|ref|ZP_05946425.1| UPF0090 domain-containing protein [Vibrio orientalis CIP 102891] gi|260937243|gb|EEX93232.1| UPF0090 domain-containing protein [Vibrio orientalis CIP 102891] Length = 151 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 80/156 (51%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ +++ + + V + + + L+IF++ ++G + + DC E+S+ +S Sbjct: 2 TGLERQLTEMLEAPVAASGYELVGLEFIRAGEHSTLRIFIDHENG-INVDDCAEVSRQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++DVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ G+++K G I Sbjct: 61 AVMDVEDPITVAYNLEVSSPGLERPLFKAAHYEQFIGHEVSIVLKMAVGNRRKWKGVIHA 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E E + ++ A LI Sbjct: 121 VDGETISVTVEGNEE--------EFALSNISKANLI 148 >gi|197287228|ref|YP_002153100.1| hypothetical protein PMI3416 [Proteus mirabilis HI4320] gi|226703818|sp|B4F2B7|RIMP_PROMH RecName: Full=Ribosome maturation factor rimP gi|194684715|emb|CAR46695.1| conserved hypothetical protein [Proteus mirabilis HI4320] Length = 152 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 82/158 (51%), Gaps = 9/158 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L +++++ +E + F V + + + L+I+++ ++G +T+ DC ++S Sbjct: 1 MGLSTLEQKLTAMVSAPVEALGFEFVGLEFIRGRVSTLRIYIDSEEG-ITVDDCADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I+ Y LE+SSPG++RP+ + + ++ G VA + ++ +++K G I Sbjct: 60 VSAVLDVEDPIQTFYNLEISSPGLERPLFTTTHYEQFIGEEVAVVLRIAMQNRRKWQGII 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + + E + ++ A L+ Sbjct: 120 KSVAGEMITVTVDGKDEV--------FALSNIQKANLV 149 >gi|148361088|ref|YP_001252295.1| hypothetical protein LPC_3059 [Legionella pneumophila str. Corby] gi|148282861|gb|ABQ56949.1| conserved hypothetical protein; DUF150 [Legionella pneumophila str. Corby] Length = 140 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 48/148 (32%), Positives = 82/148 (55%), Gaps = 10/148 (6%) Query: 28 VIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 +++P+I+ M + L + K+ LL+I++++ DG + + DC+E+S+ +S +LDVE+ I Sbjct: 2 LLEPIIKNMGYELWGCEYLSQGKHSLLRIYIDKPDG-IGIDDCQEVSKQVSAMLDVEDPI 60 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE 146 GHY LE+SSPGI RP+ + R+ G+ + + K+KL G I+ SE L Sbjct: 61 PGHYSLEISSPGIPRPLFSIWQYQRYLGYEIHVKTFKPVNGKRKLSGIIVSASEDTIVL- 119 Query: 147 KEKRGEKDMNELQIAISFDSLLSARLIV 174 D+N I +++ A L V Sbjct: 120 -------DINNEHQEILLSNIVKANLTV 140 >gi|49610183|emb|CAG73625.1| conserved hypothetical protein [Pectobacterium atrosepticum SCRI1043] Length = 140 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 9/146 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I + + + V I + + L+I+++ +DG +T+ DC ++S +S +LDVE+ I Sbjct: 1 MISAPVAALGYELVGIEFIRSRQSTLRIYIDSEDG-ITVDDCADVSHQVSAVLDVEDPIT 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LEVSSPG++RP+ + +L + G VA + ++ +++K +G I + Sbjct: 60 VAYNLEVSSPGLERPLFTAAHYLHFVGEEVAVVLRMAVQNRRKWLGVIKAVDGEMITITV 119 Query: 148 EKRGEKDMNELQIAISFDSLLSARLI 173 E + E + ++ A L+ Sbjct: 120 EGKDEV--------FALSNIQKANLV 137 >gi|262401661|ref|ZP_06078227.1| UPF0090 domain-containing protein [Vibrio sp. RC586] gi|262352078|gb|EEZ01208.1| UPF0090 domain-containing protein [Vibrio sp. RC586] Length = 151 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 82/156 (52%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ +++ + + V + + ++ L+IF++ ++G +T+ DC E+S+ +S Sbjct: 2 TGLERQLTEMLEAPVVAAGYELVGLEFVRAGQHSTLRIFIDHENG-ITVEDCAEVSRQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ +++K G I Sbjct: 61 AVLDVEDPISVVYNLEVSSPGLERPLFKPAHYEQFIGHEVSIVLKMAVANRRKWKGIIQS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + E + ++ A LI Sbjct: 121 IEGETVAVTVDGQEE--------HFALSNISKANLI 148 >gi|260771816|ref|ZP_05880734.1| UPF0090 domain-containing protein [Vibrio metschnikovii CIP 69.14] gi|260613108|gb|EEX38309.1| UPF0090 domain-containing protein [Vibrio metschnikovii CIP 69.14] Length = 151 Score = 178 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 79/156 (50%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ +++ + + V + + + L+I+++ ++G +T+ C E+S +S Sbjct: 2 TGLERQLTEMLEAPVAATGYELVGLEFVRAGEHSTLRIYIDHENG-ITVDACAEVSHQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ +++K G I Sbjct: 61 AVLDVEDPITVAYNLEVSSPGLERPLFKAAHYEQFIGHEVSIVLKMAVANRRKWKGIIHA 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + E + ++ A LI Sbjct: 121 VEGETVTVIADGQEEY--------FALSNIAKANLI 148 >gi|15640661|ref|NP_230290.1| hypothetical protein VC0641 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587845|ref|ZP_01677602.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|121728393|ref|ZP_01681421.1| conserved hypothetical protein [Vibrio cholerae V52] gi|147673580|ref|YP_001216135.1| hypothetical protein VC0395_A0172 [Vibrio cholerae O395] gi|153215845|ref|ZP_01950177.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|153801997|ref|ZP_01956583.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|153818682|ref|ZP_01971349.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|153822534|ref|ZP_01975201.1| conserved hypothetical protein [Vibrio cholerae B33] gi|153826540|ref|ZP_01979207.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|153829155|ref|ZP_01981822.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|227080822|ref|YP_002809373.1| hypothetical protein VCM66_0599 [Vibrio cholerae M66-2] gi|229505737|ref|ZP_04395247.1| clustered with transcription termination protein NusA [Vibrio cholerae BX 330286] gi|229509230|ref|ZP_04398715.1| clustered with transcription termination protein NusA [Vibrio cholerae B33] gi|229512903|ref|ZP_04402370.1| clustered with transcription termination protein NusA [Vibrio cholerae TMA 21] gi|229519561|ref|ZP_04409004.1| clustered with transcription termination protein NusA [Vibrio cholerae RC9] gi|229520932|ref|ZP_04410354.1| clustered with transcription termination protein NusA [Vibrio cholerae TM 11079-80] gi|229530446|ref|ZP_04419834.1| clustered with transcription termination protein NusA [Vibrio cholerae 12129(1)] gi|229608848|ref|YP_002879496.1| hypothetical protein VCD_003770 [Vibrio cholerae MJ-1236] gi|254292207|ref|ZP_04962975.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|254850875|ref|ZP_05240225.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255744142|ref|ZP_05418095.1| UPF0090 domain-containing protein [Vibrio cholera CIRS 101] gi|262156118|ref|ZP_06029237.1| UPF0090 domain-containing protein [Vibrio cholerae INDRE 91/1] gi|262169940|ref|ZP_06037630.1| UPF0090 domain-containing protein [Vibrio cholerae RC27] gi|262189772|ref|ZP_06048123.1| UPF0090 domain-containing protein [Vibrio cholerae CT 5369-93] gi|298500757|ref|ZP_07010560.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|34223077|sp|Q9KU82|RIMP_VIBCH RecName: Full=Ribosome maturation factor rimP gi|172047699|sp|A5F924|RIMP_VIBC3 RecName: Full=Ribosome maturation factor rimP gi|254806528|sp|C3LSP6|RIMP_VIBCM RecName: Full=Ribosome maturation factor rimP gi|9655077|gb|AAF93807.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547881|gb|EAX57965.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|121629327|gb|EAX61759.1| conserved hypothetical protein [Vibrio cholerae V52] gi|124114562|gb|EAY33382.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|124122456|gb|EAY41199.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|126510762|gb|EAZ73356.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|126519952|gb|EAZ77175.1| conserved hypothetical protein [Vibrio cholerae B33] gi|146315463|gb|ABQ20002.1| conserved hypothetical protein [Vibrio cholerae O395] gi|148875344|gb|EDL73479.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|149739720|gb|EDM53927.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|150421888|gb|EDN13867.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|227008710|gb|ACP04922.1| conserved hypothetical protein [Vibrio cholerae M66-2] gi|227012466|gb|ACP08676.1| conserved hypothetical protein [Vibrio cholerae O395] gi|229332219|gb|EEN97707.1| clustered with transcription termination protein NusA [Vibrio cholerae 12129(1)] gi|229342165|gb|EEO07161.1| clustered with transcription termination protein NusA [Vibrio cholerae TM 11079-80] gi|229344250|gb|EEO09225.1| clustered with transcription termination protein NusA [Vibrio cholerae RC9] gi|229350152|gb|EEO15105.1| clustered with transcription termination protein NusA [Vibrio cholerae TMA 21] gi|229353802|gb|EEO18738.1| clustered with transcription termination protein NusA [Vibrio cholerae B33] gi|229357960|gb|EEO22877.1| clustered with transcription termination protein NusA [Vibrio cholerae BX 330286] gi|229371503|gb|ACQ61926.1| clustered with transcription termination protein NusA [Vibrio cholerae MJ-1236] gi|254846580|gb|EET24994.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255738082|gb|EET93474.1| UPF0090 domain-containing protein [Vibrio cholera CIRS 101] gi|262021674|gb|EEY40385.1| UPF0090 domain-containing protein [Vibrio cholerae RC27] gi|262030154|gb|EEY48799.1| UPF0090 domain-containing protein [Vibrio cholerae INDRE 91/1] gi|262034349|gb|EEY52738.1| UPF0090 domain-containing protein [Vibrio cholerae CT 5369-93] gi|297540538|gb|EFH76596.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|327483443|gb|AEA77850.1| hypothetical protein VCLMA_A0562 [Vibrio cholerae LMA3894-4] Length = 151 Score = 178 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 83/156 (53%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ +++ + + V + + ++ L+IF++ ++G +T+ DC E+S+ +S Sbjct: 2 TGLERQLTEMLEAPVVAAGYELVGLEFVRAGQHSTLRIFIDHENG-ITVEDCAEVSRQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ G+++K G I Sbjct: 61 AVLDVEDPISVVYNLEVSSPGLERPLFKAAHYEQFIGHEVSIVLKMAVGNRRKWKGVIQS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + E + ++ A LI Sbjct: 121 IDGETVAVMVDGQEE--------HFALSNISKANLI 148 >gi|223042073|ref|ZP_03612249.1| hypothetical protein AM202_0665 [Actinobacillus minor 202] gi|240949225|ref|ZP_04753569.1| hypothetical protein AM305_09786 [Actinobacillus minor NM305] gi|223017148|gb|EEF15584.1| hypothetical protein AM202_0665 [Actinobacillus minor 202] gi|240296341|gb|EER46985.1| hypothetical protein AM305_09786 [Actinobacillus minor NM305] Length = 153 Score = 178 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 76/154 (49%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ + Q IE M V I L ++++++++ G +T+ DC ++S+ +S I Sbjct: 4 LEQKLTELTQDTIEAMGCELVGIECQRAGRFLTVRLYIDKE-GGVTIDDCSDVSRQVSAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ + + R+ G + + + D++K GK+ Sbjct: 63 LDVEDPIADKYNLEVSSPGLDRPLFTLAHYERFVGREITIHLRIPMFDRRKWQGKLEKVD 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + + +F ++ A L+ Sbjct: 123 GDLITLIVDNE--------ERQFAFGNIQKANLV 148 >gi|312885215|ref|ZP_07744894.1| hypothetical protein VIBC2010_19055 [Vibrio caribbenthicus ATCC BAA-2122] gi|309367155|gb|EFP94728.1| hypothetical protein VIBC2010_19055 [Vibrio caribbenthicus ATCC BAA-2122] Length = 151 Score = 178 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 78/156 (50%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ +++ + + V + + + L+IF++ +G + + DC E+S+ +S Sbjct: 2 TGLEKQLTEMLEAPVAASGYELVGLEFIRAGEHSTLRIFIDHANG-INVEDCAEVSRQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++DVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ +++K G I Sbjct: 61 AVMDVEDPITVAYNLEVSSPGLERPLFKAAHYEQFIGHEVSLVLKMAMNNRRKWKGIIES 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + E + ++ A LI Sbjct: 121 VDGEIISIAVDGNTE--------EFALSNISKANLI 148 >gi|332141180|ref|YP_004426918.1| hypothetical protein MADE_1008910 [Alteromonas macleodii str. 'Deep ecotype'] gi|259585705|sp|B4RXT6|RIMP_ALTMD RecName: Full=Ribosome maturation factor rimP gi|327551202|gb|AEA97920.1| hypothetical protein MADE_1008910 [Alteromonas macleodii str. 'Deep ecotype'] Length = 152 Score = 178 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 84/156 (53%), Gaps = 10/156 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ +++P +E + F V I + K+ +L++F++ ++G +T+ DC ++S +S I Sbjct: 4 LEEKLTEMLEPGVEALGFELVGIEFVRAGKHSILRVFIDHENG-ITVDDCADVSHQVSAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ ++ ++ G VV + + D++ GK++ Sbjct: 63 LDVEDPISTEYNLEVSSPGMDRPLFKEKHYIESVGEVVQVRLSMPMDDRRNFKGKVLACE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +E + + Q ++ ++ ++ T Sbjct: 123 NGMVSIEVDGQ--------QFQLAVANIEKGNVVPT 150 >gi|323491075|ref|ZP_08096267.1| ribosome maturation protein RimP [Vibrio brasiliensis LMG 20546] gi|323314739|gb|EGA67811.1| ribosome maturation protein RimP [Vibrio brasiliensis LMG 20546] Length = 151 Score = 178 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 80/156 (51%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ +++ + + V + + + L+IF++ ++G + + DC E+S+ +S Sbjct: 2 TGLERQLTEMLEAPVAASGYELVGLEFIRAGEHSTLRIFIDHENG-INVEDCAEVSRQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++DVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ G+++K G I Sbjct: 61 AVMDVEDPITVAYNLEVSSPGLERPLFKAAHYEQFIGHEVSIVLKMAVGNRRKWKGIIHS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E E + ++ A LI Sbjct: 121 VDGETISVTVEGNEE--------EFALSNISKANLI 148 >gi|91208407|sp|Q5WT34|RIMP_LEGPL RecName: Full=Ribosome maturation factor rimP Length = 147 Score = 178 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 48/155 (30%), Positives = 84/155 (54%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + D+ +++P+I+ M + L + K+ LL+I++++ DG + + DC+E+S+ +S + Sbjct: 2 INDDLIVLLEPIIKNMGYELWGCEYLSQGKHSLLRIYIDKPDG-IGIDDCQEVSKQVSAM 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I GHY LE+SSPGI RP+ + R+ G+ + + K+KL G I+ S Sbjct: 61 LDVEDPIPGHYSLEISSPGIPRPLFSIWQYQRYLGYEIHVKTFKPVNGKRKLSGIIVSAS 120 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L D+N I +++ A L V Sbjct: 121 GDTIVL--------DINNEHQEILLSNIVKANLTV 147 >gi|23099049|ref|NP_692515.1| hypothetical protein OB1594 [Oceanobacillus iheyensis HTE831] gi|34223115|sp|Q8EQU5|RIMP_OCEIH RecName: Full=Ribosome maturation factor rimP gi|22777277|dbj|BAC13550.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 156 Score = 178 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 78/151 (51%), Gaps = 6/151 (3%) Query: 26 SSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ P++EE + V I ++E KN L+++++++ G + + +C E+S+ +S LD + Sbjct: 10 EELVTPILEEKNLELVDIEYVKEGKNWFLRVYIDKE-GGIDIMECGEVSELLSEKLDESD 68 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I Y LEVSSPG++RP+ +K DF G + ++ ++ G + Sbjct: 69 PITEAYFLEVSSPGVERPLKKKEDFDASIGKNIFVKLYEPIDGSKEYEGTLQSFDGETVT 128 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +E + + K Q+ I + + AR+ VT Sbjct: 129 MEYKVKTRKK----QVEIPYSKIAKARIAVT 155 >gi|254787151|ref|YP_003074580.1| hypothetical protein TERTU_3219 [Teredinibacter turnerae T7901] gi|259645124|sp|C5BPW1|RIMP_TERTT RecName: Full=Ribosome maturation factor rimP gi|237686402|gb|ACR13666.1| conserved hypothetical protein [Teredinibacter turnerae T7901] Length = 152 Score = 178 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 43/155 (27%), Positives = 83/155 (53%), Gaps = 9/155 (5%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 G + +I PV+E + + ++ + +L+IF+++ + + DCE++S+ +S Sbjct: 3 GKHTQLEELIAPVVESLECELWGLEYSVQGRRSMLRIFIDKQPDGVLVEDCEKVSRQVSS 62 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LDVE+ I G Y LEVSSPG+DRP+ + + F + GH VA + ++ ++K G + G Sbjct: 63 VLDVEDPISGEYTLEVSSPGMDRPLFKLAHFELYVGHRVALRLRVAFEGRRKFQGLLKGI 122 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + LE + E + + F+ + A ++ Sbjct: 123 EDGEIVLE--------VGEEEYLLPFELIDKANVV 149 >gi|326204062|ref|ZP_08193923.1| protein of unknown function DUF150 [Clostridium papyrosolvens DSM 2782] gi|325985829|gb|EGD46664.1| protein of unknown function DUF150 [Clostridium papyrosolvens DSM 2782] Length = 152 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 83/156 (53%), Gaps = 10/156 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISP 78 + ++ ++ PV+E +++ V + ++E N L++++++ G +++ DC+ +S+ +S Sbjct: 4 NIQQTVTELVSPVVENLNYELVDVEYVKEGANWYLRVYIDKP-GGISIDDCQAVSEQVSE 62 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LD + I+ Y LEVSSPG+DRP+ + DF ++ G +V ++ K+ G+++G Sbjct: 63 LLDKNDPIDQSYYLEVSSPGLDRPLKTEKDFTKYKGELVEVKVFQPIDGKKIFEGELVGL 122 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + ++ + D + + ++ Sbjct: 123 MDNFIVISQDGH--------DVQFERDKVAVVKRVI 150 >gi|52080266|ref|YP_079057.1| hypothetical protein BL01228 [Bacillus licheniformis ATCC 14580] gi|319645954|ref|ZP_08000184.1| hypothetical protein HMPREF1012_01218 [Bacillus sp. BT1B_CT2] gi|91208394|sp|Q65JI5|RIMP_BACLD RecName: Full=Ribosome maturation factor rimP gi|52003477|gb|AAU23419.1| conserved hypothetical protein [Bacillus licheniformis ATCC 14580] gi|317391704|gb|EFV72501.1| hypothetical protein HMPREF1012_01218 [Bacillus sp. BT1B_CT2] Length = 157 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 82/156 (52%), Gaps = 6/156 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 + +S ++QP+++ + V I ++E L++F++ DDG + + +C ++S+A+S Sbjct: 5 VIDTVSEMVQPILDNLQLELVDIEFVKEGQSWFLRVFIDSDDG-VDIEECAKVSEALSEK 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + I+ +Y LEVSSPG +RP+ +++DF++ G V + ++ G++ Sbjct: 64 LDEADPIKQNYFLEVSSPGAERPLKKEADFMKALGKNVYIKTYEPIEGNKEFEGELSAFD 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + + + I I +D + ARL V+ Sbjct: 124 GENVEVTVMIKTRRK----TINIPYDKVAKARLAVS 155 >gi|169831085|ref|YP_001717067.1| hypothetical protein Daud_0922 [Candidatus Desulforudis audaxviator MP104C] gi|226696028|sp|B1I359|RIMP_DESAP RecName: Full=Ribosome maturation factor rimP gi|169637929|gb|ACA59435.1| protein of unknown function DUF150 [Candidatus Desulforudis audaxviator MP104C] Length = 154 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 9/156 (5%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISP 78 +AG + + +P+ E V++ + E L++F+++ G + L DCE +S+ + Sbjct: 5 DIAGRVEEMARPLAERKGLELVEVQYVTEGGRRYLRVFLDKP-GGINLDDCEAVSRELDR 63 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LD + I Y LEVSSPG++RP+ R D++R+ G +V ++K G++MG+ Sbjct: 64 ALDDVDFIPHSYVLEVSSPGLERPLKRAEDYVRFKGRLVQINTYAPLNGRKKFSGRLMGS 123 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E G + I +D + ARL V Sbjct: 124 GEEGVTILL-------GEHELATIPWDQISKARLAV 152 >gi|209694188|ref|YP_002262116.1| hypothetical protein VSAL_I0596 [Aliivibrio salmonicida LFI1238] gi|226707769|sp|B6ENE0|RIMP_ALISL RecName: Full=Ribosome maturation factor rimP gi|208008139|emb|CAQ78281.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238] Length = 151 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 80/156 (51%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ +++ + + + V + + + L++F++ ++G + + DC E S+ IS Sbjct: 2 TGLERQLTEMLEAPVGALGYELVGLEFIRAGEHSTLRVFIDHENG-IFVEDCAEASRQIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++DVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + + +++K G I+ Sbjct: 61 AVMDVEDPITVAYNLEVSSPGLERPLFKAAHYQQFVGHEVSLVLKMPMNNRRKWKGDILD 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + E + ++ A L+ Sbjct: 121 INGEIVTVTVDGNNE--------EFALSNISKANLV 148 >gi|225181380|ref|ZP_03734824.1| protein of unknown function DUF150 [Dethiobacter alkaliphilus AHT 1] gi|225167961|gb|EEG76768.1| protein of unknown function DUF150 [Dethiobacter alkaliphilus AHT 1] Length = 151 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 49/155 (31%), Positives = 84/155 (54%), Gaps = 9/155 (5%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISP 78 +A ++++ P+ E++ F V + ++E ++L++F++R+ G +TL C+E+S A+S Sbjct: 3 NIAERVTAIADPLAEKLGFELVDVEYVKEGSQMILRVFIDRE-GGITLDHCQEMSHALSD 61 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LD + IE Y LEVSSPGI+RP+ + DF+R+ G V+ ++ K+K G + G Sbjct: 62 ELDRVDPIEQSYHLEVSSPGIERPLKKDEDFVRFAGKPVSIKLFAPLEGKKKYGGILRGL 121 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 E LE E N + I + A L Sbjct: 122 EEGEILLEVE-------NNNLVRIPRTQVAKANLA 149 >gi|284006666|emb|CBA71928.1| conserved hypothetical protein [Arsenophonus nasoniae] Length = 150 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 80/153 (52%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++S+I +E + F V + + + L+++++ ++G +T+ DC ++S +S +L Sbjct: 4 LEQKLTSMISVPVEALGFEFVGLEFIRARVSTLRVYIDNENG-VTVDDCADVSHQVSAVL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LE+SSPG++RP+ + + R+ G V + ++ +++K G I ++ Sbjct: 63 DVEDPISVLYNLEISSPGLERPLFTVAHYQRFIGKEVNLILRIAMQNRRKWQGIIKAVND 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + E + ++ A L+ Sbjct: 123 EMITVTVDGKDEV--------FALKNIQKANLV 147 >gi|226329685|ref|ZP_03805203.1| hypothetical protein PROPEN_03595 [Proteus penneri ATCC 35198] gi|225202871|gb|EEG85225.1| hypothetical protein PROPEN_03595 [Proteus penneri ATCC 35198] Length = 152 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 81/158 (51%), Gaps = 9/158 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L +++++ +E + F V + + + L+I+++ +DG +T+ DC ++S Sbjct: 1 MGLSTLEQKLTAMVSAPVEALGFEFVGLEFIRGRESTLRIYIDSEDG-ITVDDCADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I+ Y LE+SSPG++RP+ + + ++ G A + ++ +++K G I Sbjct: 60 VSAVLDVEDPIQTVYNLEISSPGLERPLFTATHYEQFIGEEAAIVLRIAMQNRRKWQGII 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + + E + ++ A L+ Sbjct: 120 KSVAGEMITVTVDGKDEV--------FALSNIQKANLV 149 >gi|15599940|ref|NP_253434.1| hypothetical protein PA4746 [Pseudomonas aeruginosa PAO1] gi|107103845|ref|ZP_01367763.1| hypothetical protein PaerPA_01004916 [Pseudomonas aeruginosa PACS2] gi|116052893|ref|YP_793210.1| hypothetical protein PA14_62780 [Pseudomonas aeruginosa UCBPP-PA14] gi|152986446|ref|YP_001350788.1| hypothetical protein PSPA7_5464 [Pseudomonas aeruginosa PA7] gi|218893841|ref|YP_002442710.1| hypothetical protein PLES_51311 [Pseudomonas aeruginosa LESB58] gi|254238518|ref|ZP_04931841.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|254244352|ref|ZP_04937674.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|296391573|ref|ZP_06881048.1| hypothetical protein PaerPAb_25623 [Pseudomonas aeruginosa PAb1] gi|313109727|ref|ZP_07795667.1| hypothetical protein PA39016_002040024 [Pseudomonas aeruginosa 39016] gi|34223065|sp|Q9HV53|RIMP_PSEAE RecName: Full=Ribosome maturation factor rimP gi|122257096|sp|Q02FS6|RIMP_PSEAB RecName: Full=Ribosome maturation factor rimP gi|167013034|sp|A6VCK3|RIMP_PSEA7 RecName: Full=Ribosome maturation factor rimP gi|226707668|sp|B7V1F8|RIMP_PSEA8 RecName: Full=Ribosome maturation factor rimP gi|9951008|gb|AAG08132.1|AE004888_7 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|115588114|gb|ABJ14129.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14] gi|126170449|gb|EAZ55960.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126197730|gb|EAZ61793.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|150961604|gb|ABR83629.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7] gi|218774069|emb|CAW29885.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58] gi|310882169|gb|EFQ40763.1| hypothetical protein PA39016_002040024 [Pseudomonas aeruginosa 39016] Length = 152 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 77/152 (50%), Gaps = 10/152 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++ PV+E + + + + + ++ +L+++++R +G + + DCE +S+ +S ILD Sbjct: 6 EQLQALLAPVVEALGYECWGVEFISQGRHSVLRVYIDRPEG-ILIDDCEAVSRQVSGILD 64 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I G Y LEVSSPG+DRP+ F + G V + ++ G + G E Sbjct: 65 VEDPISGEYTLEVSSPGMDRPLFTLEQFAKHAGEQVKIRLRSPYEGRRNYQGILRGVEEQ 124 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + + DS+ A +I Sbjct: 125 DVVVLVDDH--------EYLLPIDSIDKANII 148 >gi|261820126|ref|YP_003258232.1| hypothetical protein Pecwa_0806 [Pectobacterium wasabiae WPP163] gi|261604139|gb|ACX86625.1| protein of unknown function DUF150 [Pectobacterium wasabiae WPP163] Length = 140 Score = 177 bits (451), Expect = 4e-43, Method: Composition-based stats. Identities = 37/146 (25%), Positives = 73/146 (50%), Gaps = 9/146 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I + + + V I + + L+I+++ +DG +T+ DC ++S +S +LDVE+ I Sbjct: 1 MISAPVAALGYELVGIEFIRSRQSTLRIYIDSEDG-ITVDDCADVSHQVSAVLDVEDPIT 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LEVSSPG++RP+ +L + G V + ++ +++K +G I + Sbjct: 60 VAYNLEVSSPGLERPLFTAEHYLHFIGEEVTVVLRMAVQNRRKWLGVINAVDGEMITITV 119 Query: 148 EKRGEKDMNELQIAISFDSLLSARLI 173 E + E + ++ A L+ Sbjct: 120 EGKDEV--------FALSNIQKANLV 137 >gi|167856226|ref|ZP_02478961.1| hypothetical protein HPS_08460 [Haemophilus parasuis 29755] gi|259585812|sp|B8F3J3|RIMP_HAEPS RecName: Full=Ribosome maturation factor rimP gi|167852646|gb|EDS23925.1| hypothetical protein HPS_08460 [Haemophilus parasuis 29755] Length = 153 Score = 177 bits (451), Expect = 5e-43, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 78/154 (50%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + ++ I+ M F V + L ++++++++ G +T+ DC ++S+ +S I Sbjct: 4 LEQKLQELVADPIDAMGFELVGVECQRAGRFLTVRLYIDKE-GGVTVDDCSDVSRQVSAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 DVE+ I Y LEVSSPG+DRP+ + + R+ G + + + D++K G+++ Sbjct: 63 FDVEDPIADKYNLEVSSPGLDRPLFTLAHYQRFVGREIVVHLRIPMLDRRKWQGELVSVE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L+ + + A +F ++ A LI Sbjct: 123 GDLITLKVDGNLQ--------AFAFGNIQKANLI 148 >gi|295706247|ref|YP_003599322.1| hypothetical protein BMD_4142 [Bacillus megaterium DSM 319] gi|294803906|gb|ADF40972.1| conserved hypothetical protein [Bacillus megaterium DSM 319] Length = 156 Score = 177 bits (451), Expect = 5e-43, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 6/156 (3%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + + ++ P++EEM+ V+I ++E K+ L++F++ D G + + DC +S+ +S Sbjct: 4 NVKQTVEEMVSPILEEMNLELVEIEYVKEGKDWFLRVFIDSDTG-VDIEDCGAVSEKLSE 62 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +D + I +Y LEVSSPG +RP+ + DF R G V + ++ G++ Sbjct: 63 KMDAVDPIPHNYFLEVSSPGAERPLKKDKDFERAIGKHVYIKTYEPIEGAKEFEGELQSF 122 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L + + + +D + ARL + Sbjct: 123 DGETVTLSIRIKTRTK----TVVLPYDKVAFARLAI 154 >gi|92115191|ref|YP_575119.1| hypothetical protein Csal_3076 [Chromohalobacter salexigens DSM 3043] gi|122419134|sp|Q1QSY8|RIMP_CHRSD RecName: Full=Ribosome maturation factor rimP gi|91798281|gb|ABE60420.1| protein of unknown function DUF150 [Chromohalobacter salexigens DSM 3043] Length = 153 Score = 177 bits (451), Expect = 5e-43, Method: Composition-based stats. Identities = 45/155 (29%), Positives = 78/155 (50%), Gaps = 10/155 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + ++I+PV+ M F + L + K+ L I++E DG +T+ DC +S+ +S Sbjct: 3 NKDAALKALIEPVVTAMGFELWGVDYLSQGKHSRLVIYIESADG-VTVDDCAAVSRQVSG 61 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LDVE+ I G YRLEVSSPG+DRP+ F + G V ++ ++K G++ G Sbjct: 62 VLDVEDPISGEYRLEVSSPGMDRPLFTLEQFASFKGSHVKVKLSTPFEGRRKFQGQLAGV 121 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + + + +S+ AR++ Sbjct: 122 EGDEILLHLDGQ--------EYCFPIESIEQARVV 148 >gi|254507524|ref|ZP_05119658.1| conserved hypothetical protein [Vibrio parahaemolyticus 16] gi|219549594|gb|EED26585.1| conserved hypothetical protein [Vibrio parahaemolyticus 16] Length = 151 Score = 177 bits (451), Expect = 5e-43, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 80/156 (51%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ +++ + + V + + + L+IF++ ++G + + DC E+S+ +S Sbjct: 2 TGLERQLTEMLEAPVAASGYELVGLEFIRAGEHSTLRIFIDHENG-INVEDCAEVSRQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++DVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ G+++K G I Sbjct: 61 AVMDVEDPITVAYNLEVSSPGLERPLFKAAHYEQFIGHEVSIVLKMAVGNRRKWKGVIHS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + E + ++ A LI Sbjct: 121 VDGETISVTVDGNEE--------EFALSNISKANLI 148 >gi|297584077|ref|YP_003699857.1| hypothetical protein Bsel_1784 [Bacillus selenitireducens MLS10] gi|297142534|gb|ADH99291.1| protein of unknown function DUF150 [Bacillus selenitireducens MLS10] Length = 156 Score = 177 bits (451), Expect = 5e-43, Method: Composition-based stats. Identities = 43/156 (27%), Positives = 76/156 (48%), Gaps = 6/156 (3%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + + + +P++ E V I ++E KN L++F++ +G + L C +S+ +S Sbjct: 4 AITDKVEKLAEPIVSEAGLELVDIEFVKEGKNWFLRVFIDGPEG-VDLDHCSTVSERLSE 62 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LD + IE Y LEVSSPG +RP+ + D + G V D++ GK++G Sbjct: 63 KLDQSDPIEQAYYLEVSSPGAERPLKKAEDITKAIGKNVHVATYAPIEDEKVFEGKLIGF 122 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E++ + Q+ I +D + ARL V Sbjct: 123 DGETLTVEQKIKTRV----SQVEIPYDKVSKARLAV 154 >gi|89895267|ref|YP_518754.1| hypothetical protein DSY2521 [Desulfitobacterium hafniense Y51] gi|122482374|sp|Q24UI2|RIMP_DESHY RecName: Full=Ribosome maturation factor rimP gi|89334715|dbj|BAE84310.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 152 Score = 177 bits (450), Expect = 6e-43, Method: Composition-based stats. Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 10/154 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISP 78 + + ++I PVI E V + ++E + L+I+++++ G + + DC +S +S Sbjct: 4 SIMEQVEAIIAPVITEQGLELVDVEYVKEGAHWYLRIYIDKE-GGVDIDDCTNVSHLVSE 62 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LD + I Y LEVSSPG++RP+ + DF R+ G +V + ++ G ++G Sbjct: 63 VLDKHDPIAQAYMLEVSSPGLERPLKKDEDFERFTGKLVRVLTKEAYQGYKEFTGYLVGL 122 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 E LE EK +AI + A L Sbjct: 123 IEDDIVLEYEKEK--------MAIPRAIVDKANL 148 >gi|307546729|ref|YP_003899208.1| hypothetical protein HELO_4139 [Halomonas elongata DSM 2581] gi|307218753|emb|CBV44023.1| K09748 hypothetical protein [Halomonas elongata DSM 2581] Length = 153 Score = 177 bits (450), Expect = 6e-43, Method: Composition-based stats. Identities = 47/150 (31%), Positives = 81/150 (54%), Gaps = 10/150 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++++I+PV+ M F I L + K+ L IF++ + G + + DC ++S+ +S +LDVE Sbjct: 8 LNALIEPVVTAMGFELWGIDYLSQGKHSRLVIFIDHEQG-VGVDDCADVSRQVSAVLDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I G YRLEVSSPG+DRP+ F R+ GH VA ++ ++K G + G Sbjct: 67 DPIAGEYRLEVSSPGMDRPLFTLEQFERYAGHTVAVKLRAPFDGRRKFQGLLAGIEGDEV 126 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L+ + + +S+ AR++ Sbjct: 127 LLQLDGE--------EYCFPIESIDQARIV 148 >gi|269961978|ref|ZP_06176333.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269833301|gb|EEZ87405.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 151 Score = 177 bits (450), Expect = 6e-43, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 79/156 (50%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ +++ +E + V + + + L+I+++ ++G + + C E+S +S Sbjct: 2 TGLERQLTEMLEAPVEASGYELVGLEFIRAGAHSTLRIYIDHENG-INVDACAEVSHQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ +++K G I Sbjct: 61 AVLDVEDPISVAYSLEVSSPGLERPLFKAAHYEQFIGHEVSIVLKMAVANRRKWAGIIHS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + E + ++ A LI Sbjct: 121 VDGETIAVTVDGQQE--------EFALSNISKANLI 148 >gi|239997163|ref|ZP_04717687.1| hypothetical protein AmacA2_22177 [Alteromonas macleodii ATCC 27126] Length = 152 Score = 177 bits (450), Expect = 6e-43, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 84/156 (53%), Gaps = 10/156 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ +++P +E + F V I + K+ +L++F++ ++G +T+ DC ++S +S I Sbjct: 4 LEEKLTEMLEPGVEALGFELVGIEFVRAGKHSILRVFIDHENG-ITVDDCADVSHQVSAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ ++ ++ G VV + + D++ GK++ Sbjct: 63 LDVEDPISTEYNLEVSSPGMDRPLFKEKHYIESVGEVVQIRLSMPMDDRRNFKGKVLACE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +E + + Q ++ ++ ++ T Sbjct: 123 NGIVSIEVDGQ--------QFQLAVANIEKGNVVPT 150 >gi|319649524|ref|ZP_08003680.1| hypothetical protein HMPREF1013_00284 [Bacillus sp. 2_A_57_CT2] gi|317398686|gb|EFV79368.1| hypothetical protein HMPREF1013_00284 [Bacillus sp. 2_A_57_CT2] Length = 155 Score = 177 bits (450), Expect = 7e-43, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 82/155 (52%), Gaps = 6/155 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + ++ P+++E++ V I ++E K+ L++F++++ G + + +C +S+ +S Sbjct: 4 VTETVEQLVTPIVDELNLELVDIEYVKEGKDWFLRVFIDKETG-VDIEECGTVSERLSEK 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD E+ I +Y LEVSSPG +RP+ + SDF++ G V + ++ G + Sbjct: 63 LDAEDPIPYNYFLEVSSPGAERPLKKDSDFVKAVGKNVFIKTYEPIDGEKTFEGVLTQFD 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + K +I I ++ + +ARL V Sbjct: 123 GETVTVEVTIKTRKK----RIEIPYEKVANARLAV 153 >gi|84778873|dbj|BAE73650.1| conserved hypothetical protein [Sodalis glossinidius str. 'morsitans'] Length = 140 Score = 177 bits (450), Expect = 7e-43, Method: Composition-based stats. Identities = 38/146 (26%), Positives = 74/146 (50%), Gaps = 9/146 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I +E + F V I + + L+I++ D+G +T+ DC ++S +S +LDVE+ I Sbjct: 1 MITAPVEALGFELVGIEFIRGRQSTLRIYINSDEG-ITVDDCADVSHQVSAVLDVEDPIS 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LEVSSPG+DRP+ + + ++ G V+ + ++ +++K G I + Sbjct: 60 VAYSLEVSSPGLDRPLFTAAHYRQFIGSDVSVVLRIAVQNRRKWQGIIKAVDGEMITVTV 119 Query: 148 EKRGEKDMNELQIAISFDSLLSARLI 173 + + E + ++ A L+ Sbjct: 120 DGKDEV--------FALQNIQKANLV 137 >gi|262042728|ref|ZP_06015882.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039953|gb|EEW41070.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 140 Score = 177 bits (449), Expect = 8e-43, Method: Composition-based stats. Identities = 40/146 (27%), Positives = 74/146 (50%), Gaps = 9/146 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 ++ +E + F V I + + L+I+++ +DG + + DC ++S +S ++DVE+ I Sbjct: 1 MLTAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVMDVEDPIT 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LEVSSPG+DRPM + R+ G VA + ++ +++KL G I + Sbjct: 60 VAYNLEVSSPGLDRPMFTAEHYQRFTGEEVALVLRMAVQNRRKLQGIIKAVDGEMITVTV 119 Query: 148 EKRGEKDMNELQIAISFDSLLSARLI 173 E + E + ++ A L+ Sbjct: 120 EGKDEV--------FALSNIQKANLV 137 >gi|114329059|ref|YP_746216.1| hypothetical protein GbCGDNIH1_2395 [Granulibacter bethesdensis CGDNIH1] gi|122325995|sp|Q0BPF9|RIMP_GRABC RecName: Full=Ribosome maturation factor rimP gi|114317233|gb|ABI63293.1| hypothetical cytosolic protein [Granulibacter bethesdensis CGDNIH1] Length = 178 Score = 177 bits (449), Expect = 8e-43, Method: Composition-based stats. Identities = 54/176 (30%), Positives = 97/176 (55%), Gaps = 9/176 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-MTLRDCEELSQ 74 L I+ +I P + +M F V++++L + +QI +R DG+ + + DCE +S Sbjct: 3 VAQTPLEQRIAGLIAPGLADMGFELVRVAVLGREQPTVQIMADRADGSLIGIDDCEAISH 62 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS-GDKQKLIG 133 A +LDVE++I+ + LEVSS GIDRP+ R D++R+ GH+ E+ + G +++ G Sbjct: 63 AAGALLDVEDVIQSTWNLEVSSAGIDRPLTRVKDWVRFAGHLAKVEMSIPGPGGRRRFSG 122 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSY 189 ++G ET L + ++++ D L A+L++TD L+ A+ + G Sbjct: 123 TVLGADETAARLRLDD-------GEEVSLPMDGLKKAKLVLTDALIDATAQDAGVA 171 >gi|152976183|ref|YP_001375700.1| hypothetical protein Bcer98_2469 [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189039695|sp|A7GRE7|RIMP_BACCN RecName: Full=Ribosome maturation factor rimP gi|152024935|gb|ABS22705.1| protein of unknown function DUF150 [Bacillus cytotoxicus NVH 391-98] Length = 156 Score = 177 bits (449), Expect = 8e-43, Method: Composition-based stats. Identities = 45/159 (28%), Positives = 84/159 (52%), Gaps = 6/159 (3%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAI 76 D + + ++ QP++EE++ V + ++E K+ L++F++ + G + + +C +S+ + Sbjct: 2 DKKVTEVVEALAQPIVEELNLELVDVEYVKEGKDWFLRVFIDSETG-VDIEECGAVSERL 60 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ GK++ Sbjct: 61 SEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFEQAVGSQVAIKTYEPIDGEKMFEGKLL 120 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 T L + K +I I D + +ARL VT Sbjct: 121 SYDGTTITLLLTIKTRKK----EIQIPMDKVANARLAVT 155 >gi|258620311|ref|ZP_05715349.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|258624682|ref|ZP_05719616.1| UPF0090 protein [Vibrio mimicus VM603] gi|262163945|ref|ZP_06031684.1| UPF0090 domain-containing protein [Vibrio mimicus VM223] gi|262172283|ref|ZP_06039961.1| UPF0090 domain-containing protein [Vibrio mimicus MB-451] gi|258582969|gb|EEW07784.1| UPF0090 protein [Vibrio mimicus VM603] gi|258587190|gb|EEW11901.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|261893359|gb|EEY39345.1| UPF0090 domain-containing protein [Vibrio mimicus MB-451] gi|262027473|gb|EEY46139.1| UPF0090 domain-containing protein [Vibrio mimicus VM223] Length = 151 Score = 177 bits (449), Expect = 9e-43, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 82/156 (52%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ +++ + + V + + ++ L+IF++ ++G +T+ DC E+S+ +S Sbjct: 2 TGLERQLTEMLEAPVVAAGYELVGLEFVRAGQHSTLRIFIDHENG-ITVEDCAEVSRQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ +++K G I Sbjct: 61 AVLDVEDPISVVYNLEVSSPGLERPLFKAAHYEQFIGHEVSIVLKMAVANRRKWKGIIQS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + E + ++ A LI Sbjct: 121 IEGETVAVMVDGQEE--------HFALSNISKANLI 148 >gi|90409005|ref|ZP_01217135.1| hypothetical protein PCNPT3_10746 [Psychromonas sp. CNPT3] gi|90309890|gb|EAS38045.1| hypothetical protein PCNPT3_10746 [Psychromonas sp. CNPT3] Length = 152 Score = 177 bits (449), Expect = 9e-43, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 77/155 (49%), Gaps = 10/155 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 L ++ + P +E++ + V I K+ +L+++++++ G + + DC +S+ IS Sbjct: 3 SLEQRLTDMFTPSVEDLGYELVGIEYTRAGKHSILRVYIDQEAG-ILVDDCAAVSRQISA 61 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 ++DVE+ I Y LEVSSPG++RP+ + + + G V ++ + ++++ G I Sbjct: 62 LMDVEDPITNEYTLEVSSPGLERPLFSATHYQAFVGSKVKIQLRMPIQNRRRWKGMIESV 121 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + E+ + ++ A ++ Sbjct: 122 EGEIISVNVDGTLER--------FALSNIQKANIV 148 >gi|26991397|ref|NP_746822.1| hypothetical protein PP_4714 [Pseudomonas putida KT2440] gi|148549781|ref|YP_001269883.1| hypothetical protein Pput_4579 [Pseudomonas putida F1] gi|259586189|sp|A5W989|RIMP_PSEP1 RecName: Full=Ribosome maturation factor rimP gi|24986466|gb|AAN70286.1|AE016669_4 conserved hypothetical protein [Pseudomonas putida KT2440] gi|148513839|gb|ABQ80699.1| protein of unknown function DUF150 [Pseudomonas putida F1] gi|313500622|gb|ADR61988.1| Ribosome maturation factor rimP [Pseudomonas putida BIRD-1] Length = 169 Score = 177 bits (449), Expect = 9e-43, Method: Composition-based stats. Identities = 44/175 (25%), Positives = 85/175 (48%), Gaps = 12/175 (6%) Query: 2 ESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERD 60 +LHS +E + +++ PV+E + ++ I + + K+ +L+I+++++ Sbjct: 4 SPIFYLHSMHEG--VQVSSKLEQLQALLAPVVEGLGYQCWGIEYVSQGKHSVLRIYIDKE 61 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 G + + DCE +S+ S ILDVE+ I Y LEVSSPG+DRP+ F G V + Sbjct: 62 -GGILVDDCEAVSRQASAILDVEDPISSEYTLEVSSPGMDRPLFTLEQFASHAGEQVKIK 120 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + ++ G + G +E+ ++ + + DS+ A +I + Sbjct: 121 LRSPFEGRRNFQGLLRGV--------EEQDVVVQVDNQEFLLPIDSIDKANIIPS 167 >gi|119713530|gb|ABL97583.1| hypothetical protein MBMO_EB0-35D03.0046 [uncultured marine bacterium EB0_35D03] Length = 153 Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 43/154 (27%), Positives = 79/154 (51%), Gaps = 8/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 +A + S+I P I ++ + + + + K+ +L+++++ + G + + DCE +S+ +S I Sbjct: 4 IADKLFSIINPSINDLGYELLGVEYVSSGKHSVLRLYIDSEKG-IGVDDCETVSRQVSAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +DVE+ I G Y LEVSSPGI+RP+ + + + R+ GH V ++ G I S Sbjct: 63 MDVEDPISGQYNLEVSSPGIERPLFKVAHYQRFLGHDVRLRTYRPLDGRRNFTGAIGSVS 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 ET E + + D + A L+ Sbjct: 123 ETSNTFEL------VTELGPVTLDIDLIEKANLV 150 >gi|308050586|ref|YP_003914152.1| hypothetical protein Fbal_2876 [Ferrimonas balearica DSM 9799] gi|307632776|gb|ADN77078.1| protein of unknown function DUF150 [Ferrimonas balearica DSM 9799] Length = 151 Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 75/154 (48%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 + ++ ++ +E + + I + N L++F+E ++G +T+ DC +S+ + + Sbjct: 4 MEQRLTEMLSEPVEALGYELWGIQYVRAGNHSTLRLFIEHENG-ITVDDCAAVSRQVGAV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ + R+ G + + K+K G+I+ Sbjct: 63 LDVEDPITTEYNLEVSSPGLDRPLFTAEHYQRYMGSEAVVVLNMPMEGKRKWQGEIVAVE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L ++ + +A+ ++ A +I Sbjct: 123 GDMVTLRHNEKDQV------VALP--NVQKAHVI 148 >gi|261212248|ref|ZP_05926534.1| UPF0090 domain-containing protein [Vibrio sp. RC341] gi|260838856|gb|EEX65507.1| UPF0090 domain-containing protein [Vibrio sp. RC341] Length = 151 Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 82/156 (52%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ +++ + + V + + ++ L+IF++ ++G +T+ DC E+S+ +S Sbjct: 2 TGLERQLTEMLEAPVVAAGYELVGLEFVRAGQHSTLRIFIDHENG-ITVEDCAEVSRQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ +++K G I Sbjct: 61 AVLDVEDPISVVYNLEVSSPGLERPLFKAAHYEQFIGHEVSIVLKMAVANRRKWKGFIQA 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + E + ++ A LI Sbjct: 121 IDGETVAVMVDGQEE--------HFALSNISKANLI 148 >gi|254447077|ref|ZP_05060544.1| conserved hypothetical protein [gamma proteobacterium HTCC5015] gi|198263216|gb|EDY87494.1| conserved hypothetical protein [gamma proteobacterium HTCC5015] Length = 159 Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 40/149 (26%), Positives = 86/149 (57%), Gaps = 10/149 (6%) Query: 26 SSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 S+I+PV++++ + V + + +L ++++RD+G + + DC ++S+ +S +LDVE+ Sbjct: 9 WSLIEPVVQDLGYELVGVDFRANASPAVLCVYIDRDEG-VNIDDCAKISREVSAVLDVED 67 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I Y LEVSSPG+DRP+ R+SDF+++ GH+ ++ + +++ G++ G + Sbjct: 68 PITSAYNLEVSSPGLDRPLFRESDFVKYKGHLAKVKLSIPYEERRNFKGQLNGVEDGMVL 127 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + + + ++ + A L+ Sbjct: 128 LIVDNE--------EYLLPYEQIEKANLV 148 >gi|259585829|sp|B3PI94|RIMP_CELJU RecName: Full=Ribosome maturation factor rimP Length = 164 Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 44/161 (27%), Positives = 84/161 (52%), Gaps = 11/161 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQAISPILD 81 ++ +I PV+E + + L + L+IF++ G ++L DCE +S+ IS +LD Sbjct: 6 ERLTDLIVPVVESLGCELWGLEYLTQGRYTTLRIFIDGPQG-VSLDDCERVSRQISAVLD 64 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I+G Y LEVSSPG+DRP+ ++ + R+ G V + ++ +++ G I E Sbjct: 65 VEDPIDGEYTLEVSSPGLDRPLYTEAQYARYVGETVNLRLRIAVEGRRRFKGVISAIEEG 124 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT-DELLRA 181 L+ + + + + +++ L+ D++LR Sbjct: 125 ALLLQFDNQ--------TVRLPIETIDKGNLVPRYDDILRE 157 >gi|259585711|sp|A0KNE5|RIMP_AERHH RecName: Full=Ribosome maturation factor rimP Length = 152 Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 79/154 (51%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ +++ + + F I + K+ L+++++ + G +++ +C E+S + I Sbjct: 4 LEQRLTDLLEAPVVALGFELWGIEFIRAGKHSTLRVYIDGEHG-VSVENCAEVSHQVGAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +DVE+ I Y LEVSSPG+DRP+ + + F ++ G A + +++ +++K G I Sbjct: 63 MDVEDPITEEYYLEVSSPGLDRPLFKVAQFEKYVGQEAAVTLRMATNNRRKFKGVIKAVQ 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + + E ++F ++ A ++ Sbjct: 123 GDMITLTVDGKDEV--------LAFTNIQKANIV 148 >gi|253573563|ref|ZP_04850906.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251847091|gb|EES75096.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 153 Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 75/155 (48%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + ++ P +EE F V + ++E N L++FV+++ G + + DC +S+ +S Sbjct: 6 IKATVEQMVTPYLEENGFELVDVEYVKEGSNWFLRVFVDKE-GGIDIDDCGRISEYLSEK 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + I Y LEVSSPG +RP+ + D + G V ++ G+++ Sbjct: 65 LDENDPIPSAYFLEVSSPGAERPLKKAEDVSKAVGKDVFVTTYEPVDGLKEFEGRLLSFD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E K+ + AI ++ + SARL + Sbjct: 125 GDELVVEVGKK--------RHAIPYNKVASARLAI 151 >gi|54307813|ref|YP_128833.1| hypothetical protein PBPRA0610 [Photobacterium profundum SS9] gi|90412483|ref|ZP_01220486.1| hypothetical protein P3TCK_13963 [Photobacterium profundum 3TCK] gi|51316622|sp|Q6LUJ4|RIMP_PHOPR RecName: Full=Ribosome maturation factor rimP gi|46912236|emb|CAG19031.1| conserved hypothetical protein [Photobacterium profundum SS9] gi|90326520|gb|EAS42926.1| hypothetical protein P3TCK_13963 [Photobacterium profundum 3TCK] Length = 151 Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 78/156 (50%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 L ++ +++ + + V + + + L++FV+ ++G + + DC E S+ IS Sbjct: 2 TALEMQLTELLEASVNASGYELVGLEFIRAGEHSTLRVFVDHENG-INVEDCAEASRQIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++DVE+ I Y LEVSSPG++RP+ + + + ++ GH V + ++ +++K G I+ Sbjct: 61 AVMDVEDPITVAYHLEVSSPGLERPLFKAAHYQQFVGHEVNLVLKMAMNNRRKWKGDIVA 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L+ + E + ++ A LI Sbjct: 121 VEGELITLKVDGNDE--------TFALSNISKANLI 148 >gi|104780026|ref|YP_606524.1| hypothetical protein PSEEN0793 [Pseudomonas entomophila L48] gi|259586182|sp|Q1IF45|RIMP_PSEE4 RecName: Full=Ribosome maturation factor rimP gi|95109013|emb|CAK13709.1| conserved hypothetical protein [Pseudomonas entomophila L48] Length = 169 Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 44/175 (25%), Positives = 85/175 (48%), Gaps = 12/175 (6%) Query: 2 ESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERD 60 +LHS +E + +++ PV+E + ++ I + + K+ +L+I+++++ Sbjct: 4 SPIFYLHSMHEG--VQVSSKLEQLQALLAPVVEGLGYQCWGIEYVSQGKHSVLRIYIDKE 61 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 G + + DCE +S+ S ILDVE+ I Y LEVSSPG+DRP+ F G V + Sbjct: 62 -GGILVDDCEAVSRQASAILDVEDPISSEYTLEVSSPGMDRPLFTLEQFASHAGEQVKIK 120 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + ++ G + G +E+ ++ + + DS+ A +I + Sbjct: 121 LRTPFEGRRNFQGLLRGV--------EEQDVVVQVDNHEFLLPIDSIDKANIIPS 167 >gi|332306995|ref|YP_004434846.1| hypothetical protein Glaag_2637 [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174324|gb|AEE23578.1| protein of unknown function DUF150 [Glaciecola agarilytica 4H-3-7+YE-5] Length = 152 Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 82/156 (52%), Gaps = 10/156 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ ++ +E + F V I + K+ ++++++ DG +T+ C E+S +S + Sbjct: 4 LEQKLTEMLTAPVEALGFEMVGIEFVRAGKHSTMRVYIDHPDG-ITVDHCAEVSHQVSAV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG++RP+ + ++ G VV + + GD++ GK++ + Sbjct: 63 LDVEDPINTEYNLEVSSPGMERPLFKLQHYIDSVGEVVTLRLKMPMGDRRNFKGKLLSEA 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + +E + + + ++F ++ ++ T Sbjct: 123 DGMLTIEVDNQ--------EFVLAFANIEKGNVVPT 150 >gi|218898969|ref|YP_002447380.1| hypothetical protein BCG9842_B1329 [Bacillus cereus G9842] gi|226695927|sp|B7IUH5|RIMP_BACC2 RecName: Full=Ribosome maturation factor rimP gi|218540973|gb|ACK93367.1| conserved hypothetical protein [Bacillus cereus G9842] gi|326941583|gb|AEA17479.1| hypothetical protein CT43_CH3814 [Bacillus thuringiensis serovar chinensis CT-43] Length = 156 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 44/159 (27%), Positives = 82/159 (51%), Gaps = 6/159 (3%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAI 76 D + + + QP++EE++ V + ++E + L++F++ + G + + +C +S+ + Sbjct: 2 DKKVTEVVEAFAQPIVEELNLELVDVEYVKEGQDWFLRVFIDSEKG-VDIEECGAVSERL 60 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ GK++ Sbjct: 61 SEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMFEGKLL 120 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 T L + K +I I D + +ARL VT Sbjct: 121 SYDGTTITLLLTIKTRKK----EIQIPMDKVANARLAVT 155 >gi|312869023|ref|ZP_07729200.1| conserved hypothetical protein [Lactobacillus oris PB013-T2-3] gi|311095449|gb|EFQ53716.1| conserved hypothetical protein [Lactobacillus oris PB013-T2-3] Length = 157 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 77/157 (49%), Gaps = 8/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + ++ ++ P+++E F I ++E K+ L++++++ DG +TL DC +S +S Sbjct: 4 VTETVTDLVTPILDEHHFYLYDIEFVKEGKSWYLRVYIDK-DGGITLDDCATVSDQLSEA 62 Query: 80 LD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + I Y LEVSSPG +RP+ ++D+ R H + + K+ G +M Sbjct: 63 LDNVEPDPIPQAYFLEVSSPGAERPLKNEADYQRAVNHYIHVSLYQQIAGKKVYEGTLME 122 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 S+ L+ + Q+ I + ARL + Sbjct: 123 LSDKEMTLDFMDKTRHR----QVVIDRSKVAKARLAI 155 >gi|269137761|ref|YP_003294461.1| hypothetical protein ETAE_0403 [Edwardsiella tarda EIB202] gi|267983421|gb|ACY83250.1| conserved hypothetical protein [Edwardsiella tarda EIB202] gi|304557818|gb|ADM40482.1| hypothetical protein ETAF_0358 [Edwardsiella tarda FL6-60] Length = 140 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 72/146 (49%), Gaps = 9/146 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I +E + F V I + ++ L+I+++ ++G +T+ +C ++S +S +LDVE+ I Sbjct: 1 MITAPVEALGFELVGIEFIRGRHSTLRIYIDSEEG-ITVDNCADVSHQVSAVLDVEDPIS 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LEVSSPG+DRP+ + + V + ++ +++K G I + Sbjct: 60 VAYYLEVSSPGMDRPLFTAEHYTHFLNEEVTLVLRMAMQNRRKWQGIIKAVDGEMITVTV 119 Query: 148 EKRGEKDMNELQIAISFDSLLSARLI 173 + + E + ++ A L+ Sbjct: 120 DGKDEV--------FALSNVQKANLV 137 >gi|229019011|ref|ZP_04175853.1| hypothetical protein bcere0030_35250 [Bacillus cereus AH1273] gi|229025257|ref|ZP_04181677.1| hypothetical protein bcere0029_35590 [Bacillus cereus AH1272] gi|228736010|gb|EEL86585.1| hypothetical protein bcere0029_35590 [Bacillus cereus AH1272] gi|228742339|gb|EEL92497.1| hypothetical protein bcere0030_35250 [Bacillus cereus AH1273] Length = 156 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 44/159 (27%), Positives = 82/159 (51%), Gaps = 6/159 (3%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAI 76 D + + + QP++EE++ V + ++E + L++F++ + G + + +C +S+ + Sbjct: 2 DKKVTEVVEAFAQPIVEELNLELVDVEYVQEGQDWFLRVFIDSEKG-VDIEECGAVSERL 60 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ GK++ Sbjct: 61 SEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMFEGKLL 120 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 T L + K +I I D + +ARL VT Sbjct: 121 SYDGTTITLLLTIKTRKK----EIQIPMDKVANARLAVT 155 >gi|238897564|ref|YP_002923243.1| hypothetical protein HDEF_0333 [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259585781|sp|C4K3F2|RIMP_HAMD5 RecName: Full=Ribosome maturation factor rimP gi|229465321|gb|ACQ67095.1| conserved hypothetical protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 155 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 37/160 (23%), Positives = 79/160 (49%), Gaps = 9/160 (5%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELS 73 R G L + +I +E + + V I ++ + +L+I+++ ++G +T+ C ++S Sbjct: 2 RSVGLSILVKKLKKIITAPVEGLGYELVGIEFIQSRQSVLRIYIDHEEG-VTVDSCADVS 60 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 + +S +LDVE+ I Y LE+SSPG+DRP+ + ++ G V + ++ +++K G Sbjct: 61 KEVSLVLDVEDPITVPYNLEISSPGLDRPLFTARHYAQFIGEKVNLMLRMAIQNQRKWQG 120 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 I + ++ E + ++ A L+ Sbjct: 121 IIKSVDGESIIVAVNQKDEV--------FALSNIQKANLV 152 >gi|53804602|ref|YP_113779.1| hypothetical protein MCA1317 [Methylococcus capsulatus str. Bath] gi|81682218|sp|Q609B8|RIMP_METCA RecName: Full=Ribosome maturation factor rimP gi|53758363|gb|AAU92654.1| conserved hypothetical protein [Methylococcus capsulatus str. Bath] Length = 150 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 46/155 (29%), Positives = 80/155 (51%), Gaps = 10/155 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 M + + +I+PV+ + + I + + +L+++++ G + L DC ++S +S Sbjct: 1 MRMPEHLQRLIEPVVTGLGYELAGIEF-DARARVLRVYIDHPQG-IGLDDCSKVSYQLSG 58 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LDVE+ I G Y+LE+SSPG+DRP+ F R+ G V + + S +++ G+I G Sbjct: 59 MLDVEDPIPGQYQLEISSPGLDRPLFTLEHFKRFTGRRVRLQTLRSLDGQRRFKGEIAGV 118 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 LE + AI FD + ARLI Sbjct: 119 RGDVIDLEDDNGLH--------AIPFDLIDKARLI 145 >gi|145298042|ref|YP_001140883.1| hypothetical protein ASA_1008 [Aeromonas salmonicida subsp. salmonicida A449] gi|166919114|sp|A4SJR3|RIMP_AERS4 RecName: Full=Ribosome maturation factor rimP gi|142850814|gb|ABO89135.1| conserved hypothetical protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 152 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 80/154 (51%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ +++ + + F I + N L++F++ ++G +T+ +C E+S + I Sbjct: 4 LEQRLTDLLEAPVVALGFELWGIEFIRAGNHSTLRVFIDGENG-VTVENCAEVSHQVGAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +DVE+ I Y LEVSSPG+DRP+ + + F ++ G A ++ +++ +++K G I Sbjct: 63 MDVEDPITEEYFLEVSSPGLDRPLFKVAQFEKYVGQEAAVQLRMATNNRRKFKGVIKAVQ 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + + + ++F ++ A ++ Sbjct: 123 GDMITLTVDGKDDV--------LAFTNIQKANIV 148 >gi|295696155|ref|YP_003589393.1| protein of unknown function DUF150 [Bacillus tusciae DSM 2912] gi|295411757|gb|ADG06249.1| protein of unknown function DUF150 [Bacillus tusciae DSM 2912] Length = 154 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 +A + + +P++E V + ++E N L++FV+R +G + + DC +S+ +S Sbjct: 6 IAAVVEEIARPIVEGEGLELVDVEYVKEGANWFLRVFVDRPEGGVDIDDCSRVSERLSDR 65 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + I G Y LEVSSPGI+RP+ F R G V ++ G + Sbjct: 66 LDEIDPIPGSYFLEVSSPGIERPLKNMPAFRRALGQTVVVTTYEPVQGRKSFQGLLTEVD 125 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + G + ++ I + ++ SAR + Sbjct: 126 DEGIAVAD--------GDVVWTIPYRAVASARTV 151 >gi|311068182|ref|YP_003973105.1| hypothetical protein BATR1942_06100 [Bacillus atrophaeus 1942] gi|310868699|gb|ADP32174.1| hypothetical protein BATR1942_06100 [Bacillus atrophaeus 1942] Length = 157 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 77/151 (50%), Gaps = 6/151 (3%) Query: 26 SSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + QP+ + + V I ++E N L++F++ D+G + + +C ++S+ +S LD + Sbjct: 10 REMAQPIADNLQLELVDIEFVKEGQNWFLRVFIDSDNG-VDIEECAKVSELLSEKLDEAD 68 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I +Y LEVSSPG +RP+ +K+DF R G V + + G++ Sbjct: 69 PISQNYFLEVSSPGAERPLKKKADFDRSLGKNVYIKTYEPIDGVKVFEGELAEFDGQTVT 128 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +E + K +I I ++ + +ARL V+ Sbjct: 129 VEMTIKTRKK----RINIPYEKIANARLAVS 155 >gi|115372720|ref|ZP_01460026.1| YlxS [Stigmatella aurantiaca DW4/3-1] gi|115370201|gb|EAU69130.1| YlxS [Stigmatella aurantiaca DW4/3-1] Length = 249 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 76/155 (49%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + ++++P++ + + + E+ +L++F+++ G + L +C ++S+A+ P Sbjct: 98 VEERAMTLLEPIVAGEGLELIDLEFVREREGWVLRLFIDKPGGRVGLDECSQVSRAVDPA 157 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD--KQKLIGKIMG 137 LDVE+++ Y LEVSSPG++RP+ + S + R G V + GD ++ G + Sbjct: 158 LDVEDLVPNEYNLEVSSPGVNRPLKKLSHYERVKGQKVKVKTFGPIGDPPRKNFSGTLTE 217 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + G +E E G I + A L Sbjct: 218 VTAEGIAVEVEGAGA-------FRIPLKDIAKANL 245 >gi|311695960|gb|ADP98833.1| protein belonging to uncharacterized protein family UPF0090 [marine bacterium HP15] Length = 153 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 41/152 (26%), Positives = 80/152 (52%), Gaps = 9/152 (5%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILD 81 + ++QPV+E + + I + + LL++F++ + + + DCE++S+ IS ++D Sbjct: 6 KQLEDILQPVVEGLGYEFWGIEFRSQGHHSLLRVFIDDAENGIGVDDCEKVSRQISGVMD 65 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I+ Y LEVSSPG+DRP+ R + + GH V + ++ ++K G I G Sbjct: 66 VEDPIQTEYTLEVSSPGMDRPLFRLEQYEAFVGHQVQIRLRMAFEGRRKFQGLIKGVEG- 124 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 +++ + + FDS+ A ++ Sbjct: 125 -------DDVVVVVDDHEYLLPFDSIEKAHIV 149 >gi|325294241|ref|YP_004280755.1| ribosome maturation factor rimP [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064689|gb|ADY72696.1| Ribosome maturation factor rimP [Desulfurobacterium thermolithotrophum DSM 11699] Length = 162 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 45/153 (29%), Positives = 85/153 (55%), Gaps = 7/153 (4%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + ++ P++EE F V I + E +L+I+ +R +G +T+ DC+ +S+ I + Sbjct: 8 IVDRVKELLFPILEEGGFELVDIEFVREPIGWVLRIYADRPEGGITISDCQWISERIGTL 67 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD+E++I Y LEVSSPG++RP+ + DF R G VV + +++ G+++ S Sbjct: 68 LDIEDLIPHAYNLEVSSPGLNRPLKNQRDFERNLGTVVKIKTHEPMDNQRNFKGEVISAS 127 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 E+ + R ++ I F+++ SAR+ Sbjct: 128 ESAVVIHDVSR------NAEVEIPFENIKSARI 154 >gi|110833188|ref|YP_692047.1| hypothetical protein ABO_0327 [Alcanivorax borkumensis SK2] gi|110646299|emb|CAL15775.1| conserved hypothetical protein [Alcanivorax borkumensis SK2] Length = 181 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 40/166 (24%), Positives = 82/166 (49%), Gaps = 9/166 (5%) Query: 7 LHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTL 66 H + P ++ ++ PV+E++ F + ++ + +L++F++ DG +++ Sbjct: 20 AHFLFVPAERFMSKRTEQLTELLAPVVEDLGFVLWGVEYIQGRGAVLRVFIDHADG-ISV 78 Query: 67 RDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 DC +S +S +LDVE+ I G + LEVSSPG+DRPM + ++ + G V +++ Sbjct: 79 DDCAAVSHEVSGVLDVEDPIPGEFNLEVSSPGMDRPMFDITQYVDYIGEDVQLKLLAPVS 138 Query: 127 DKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 K+K+ I+ +E + + + + + ARL Sbjct: 139 GKRKMTAAIVAVDGDTLVVELDGE--------TLRVPYSQVDRARL 176 >gi|332992816|gb|AEF02871.1| hypothetical protein ambt_06680 [Alteromonas sp. SN2] Length = 152 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 83/156 (53%), Gaps = 10/156 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ ++ P +E + F V I + K+ +L++F++ ++G +++ +C ++S +S I Sbjct: 4 LEEKLTEMLNPGVEALGFELVGIEFVRAGKHSILRVFIDHENG-ISVDNCADVSHQVSAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ ++ ++ G VV + + D++ GK++ Sbjct: 63 LDVEDPISTEYNLEVSSPGMDRPLFKEKHYVDSVGEVVQVRLSMPMDDRRNFKGKVLACD 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +E + + Q ++ ++ ++ T Sbjct: 123 NGVVSIEVDGQ--------QFQLAVANIEKGNVVPT 150 >gi|259585704|sp|B7GG79|RIMP_ANOFW RecName: Full=Ribosome maturation factor rimP Length = 156 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 6/151 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ P++ M V I ++E KN L++F++ G + + C +S+ +S LD Sbjct: 8 VEELVTPIVTHMGLELVDIEYVKEGKNWFLRVFIDSPTG-IDIDQCGVVSEQLSEKLDEI 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I +Y LEVSSPG +RP+ + DF R G V + +++ G + Sbjct: 67 DPIPHNYFLEVSSPGAERPLKKARDFERAVGKNVYVKTYEPIDGQKEFEGLLTAFDGQT- 125 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + I I ++ + SARL V Sbjct: 126 ---VTVEVKVKTKKKTITIPYEKVASARLAV 153 >gi|219669698|ref|YP_002460133.1| hypothetical protein Dhaf_3680 [Desulfitobacterium hafniense DCB-2] gi|254800077|sp|B8FR10|RIMP_DESHD RecName: Full=Ribosome maturation factor rimP gi|219539958|gb|ACL21697.1| protein of unknown function DUF150 [Desulfitobacterium hafniense DCB-2] Length = 152 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 10/154 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISP 78 + + ++I PVI E V + ++E + L+I+++++ G + + DC +S +S Sbjct: 4 SIMEQVEAIIAPVITEQGLELVDVEYVKEGAHWYLRIYIDKE-GGVDIDDCTNVSHLVSE 62 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LD + I Y LEVSSPG++RP+ + DF R+ G +V ++ G ++G Sbjct: 63 VLDKHDPIAQAYMLEVSSPGLERPLKKDEDFERFTGKLVRVLTKEVYQGYKEFTGYLVGL 122 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 E LE EK ++AI + A L Sbjct: 123 IEDDIVLEYEKE--------RMAIPRAIVDKANL 148 >gi|220931625|ref|YP_002508533.1| hypothetical protein Hore_07810 [Halothermothrix orenii H 168] gi|259585780|sp|B8CW69|RIMP_HALOH RecName: Full=Ribosome maturation factor rimP gi|219992935|gb|ACL69538.1| uncharacterized protein conserved in bacteria [Halothermothrix orenii H 168] Length = 159 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 43/155 (27%), Positives = 80/155 (51%), Gaps = 7/155 (4%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + + QP++E V + ++E N +L++F+E +G +TL CE +S+ + Sbjct: 4 ITDRVEDLAQPIVESQGLELVDVEYVKEGENRVLRVFIENPEGEVTLDHCENVSKNLDEK 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + I+ Y LEVSSPGI+RP+ +K DF R++G + + +++ G I G Sbjct: 64 LDEVDPIQESYILEVSSPGIERPLKKKEDFDRFSGKLAYIKTFAPVSGNKEITGIIKGRD 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + K+ ++ ++ I F + A L+V Sbjct: 124 GDNIKVLKKD------DDKELEIPFSQIAKAHLMV 152 >gi|221134837|ref|ZP_03561140.1| hypothetical protein GHTCC_07897 [Glaciecola sp. HTCC2999] Length = 165 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 77/154 (50%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ ++ P E + F V + + K+ +L++F++ DG +++ C ++SQ S I Sbjct: 17 LEKKLTEMLTPAAESLGFEMVGVEFVRAGKHSILRVFIDHPDG-ISVDHCADVSQQASAI 75 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ + + + G +VA + + +++ G ++ Sbjct: 76 LDVEDPINTEYNLEVSSPGMDRPLFKTAHYEAIVGEMVAVRLRMPMNERRNFKGTLLSCE 135 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 +E + + ++ ++ L+ Sbjct: 136 NDNIVVEVDGQSY--------TLAIMNIEKGNLV 161 >gi|297580767|ref|ZP_06942693.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|297535183|gb|EFH74018.1| conserved hypothetical protein [Vibrio cholerae RC385] Length = 151 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 83/156 (53%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ +++ + + V + + ++ L+IF++ ++G +T+ DC E+S+ +S Sbjct: 2 TGLERQLTEMLEAPVVAAGYELVGLEFVRAGQHSTLRIFIDHENG-ITVEDCAEVSRQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I Y LEVSSPG+++P+ + + + ++ GH V+ + ++ G+++K G I Sbjct: 61 AVLDVEDPISVVYNLEVSSPGLEKPLFKAAHYEQFIGHEVSIVLKMAVGNRRKWKGVIQS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + E + ++ A LI Sbjct: 121 IDGETVAVMVDGQEE--------HFALSNISKANLI 148 >gi|257865908|ref|ZP_05645561.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257872241|ref|ZP_05651894.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257875535|ref|ZP_05655188.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] gi|257799842|gb|EEV28894.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257806405|gb|EEV35227.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257809701|gb|EEV38521.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] Length = 157 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 78/157 (49%), Gaps = 8/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + ++ ++ P+++ F V++ ++E KN L++F++++ G + + +C +S+ +S Sbjct: 4 VVETVTDIVTPILDAQKFELVEVEFVKEGKNWFLRVFIDKE-GGIDIEECAFVSEQLSEQ 62 Query: 80 LD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + I Y LEVSSPG +RP+ +++D+ R G + + +++ G + Sbjct: 63 LDQCEPDPIPQAYFLEVSSPGAERPLKKEADYQRAVGEYIHVSLYQPIDGEKQFEGFLQS 122 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E + + E + I ++ ARL + Sbjct: 123 FDENQLVI----KTRIKTREKERTIDRKNIAKARLAI 155 >gi|170719905|ref|YP_001747593.1| hypothetical protein PputW619_0719 [Pseudomonas putida W619] gi|259586190|sp|B1J268|RIMP_PSEPW RecName: Full=Ribosome maturation factor rimP gi|169757908|gb|ACA71224.1| protein of unknown function DUF150 [Pseudomonas putida W619] Length = 169 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 44/175 (25%), Positives = 85/175 (48%), Gaps = 12/175 (6%) Query: 2 ESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERD 60 +LHS +E + +++ PV+E + ++ I + + K+ +L+I+++++ Sbjct: 4 SPIFYLHSMHEG--VQVSSKLEQLQALLAPVVEGLGYQCWGIEYVSQGKHSVLRIYIDKE 61 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 G + + DCE +S+ S ILDVE+ I Y LEVSSPG+DRP+ F G V + Sbjct: 62 -GGILVEDCEAVSRQASAILDVEDPISSEYTLEVSSPGMDRPLFTLEQFASHAGEQVKIK 120 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + ++ G + G +E+ ++ + + DS+ A +I + Sbjct: 121 LRTPFEGRRNFQGLLRGV--------EEQDVVVQVDSHEFLLPIDSIDKANIIPS 167 >gi|194099045|ref|YP_002002126.1| hypothetical protein NGK_1501 [Neisseria gonorrhoeae NCCP11945] gi|193934335|gb|ACF30159.1| UPF0090 protein [Neisseria gonorrhoeae NCCP11945] Length = 205 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 80/159 (50%), Gaps = 13/159 (8%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELS 73 +G + DI ++++ + + + V L + L++F++++ G +T+ DC +S Sbjct: 54 FFIMYIGSSMDIQTILEKTLPGLGYELVDFELAAQG--TLRVFIDKE-GGITVEDCATVS 110 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 +S + VE+I G+ LE+SSPG+DRP+ + +DF+R+ G + L G ++ IG Sbjct: 111 NHLSRVFMVEDI--GYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIGGQKNFIG 168 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 KI G + + + + I ++ ARL Sbjct: 169 KIEGCENDTVTVSFDGK--------TVQIELGNIDKARL 199 >gi|153814922|ref|ZP_01967590.1| hypothetical protein RUMTOR_01137 [Ruminococcus torques ATCC 27756] gi|317500434|ref|ZP_07958658.1| ribosome maturation factor rimP [Lachnospiraceae bacterium 8_1_57FAA] gi|331089559|ref|ZP_08338458.1| ribosome maturation factor rimP [Lachnospiraceae bacterium 3_1_46FAA] gi|145847953|gb|EDK24871.1| hypothetical protein RUMTOR_01137 [Ruminococcus torques ATCC 27756] gi|316898189|gb|EFV20236.1| ribosome maturation factor rimP [Lachnospiraceae bacterium 8_1_57FAA] gi|330404927|gb|EGG84465.1| ribosome maturation factor rimP [Lachnospiraceae bacterium 3_1_46FAA] Length = 155 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 71/142 (50%), Gaps = 2/142 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPIL 80 +++P++ + F V + ++E L+ ++++ G +T+ DCE +S+ S IL Sbjct: 8 EQKTEELLEPIVSALGFELVDVEYVKEAGTWYLRAYIDKP-GGITVDDCEAVSRKFSDIL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D ++ I Y EVSSPG+ RP+ ++ DF R G V + +++ G + G E Sbjct: 67 DEKDYIPDSYVFEVSSPGLGRPLKKEKDFKRSIGEEVEIRTYRAIDRQKEFTGILKGFDE 126 Query: 141 TGFFLEKEKRGEKDMNELQIAI 162 + E E+ + +IA+ Sbjct: 127 NTVTIIYEDETEQVFDRAEIAL 148 >gi|163941554|ref|YP_001646438.1| hypothetical protein BcerKBAB4_3639 [Bacillus weihenstephanensis KBAB4] gi|226705817|sp|A9VT54|RIMP_BACWK RecName: Full=Ribosome maturation factor rimP gi|163863751|gb|ABY44810.1| protein of unknown function DUF150 [Bacillus weihenstephanensis KBAB4] Length = 156 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 81/159 (50%), Gaps = 6/159 (3%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAI 76 D + + + QP++EE++ V + ++E + L++F++ + G + + +C +S+ + Sbjct: 2 DKKVTEIVEAFAQPIVEELNLELVDVEYVQEGQDWFLRVFIDSEKG-VEIEECGAVSERL 60 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ GK++ Sbjct: 61 SEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYKPIDGEKMFEGKLL 120 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 L + K +I I D + +ARL VT Sbjct: 121 SYDGNTITLLLTIKTRKK----EIQIPMDKVANARLAVT 155 >gi|109898013|ref|YP_661268.1| hypothetical protein Patl_1693 [Pseudoalteromonas atlantica T6c] gi|122972050|sp|Q15V74|RIMP_PSEA6 RecName: Full=Ribosome maturation factor rimP gi|109700294|gb|ABG40214.1| protein of unknown function DUF150 [Pseudoalteromonas atlantica T6c] Length = 152 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 82/156 (52%), Gaps = 10/156 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ ++ +E + F V I + K+ ++++++ DG +++ C E+S +S + Sbjct: 4 LEQKLTEMLTAPVEALGFEMVGIEFVRAGKHSTMRVYIDHPDG-ISVDHCAEVSHQVSAV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG++RP+ + ++ G VV + + GD++ GK++ + Sbjct: 63 LDVEDPINTEYNLEVSSPGMERPLFKLQHYIESVGEVVTLRLKMPMGDRRNFKGKLLSEA 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + +E + + + ++F ++ ++ T Sbjct: 123 DGMLTIEVDNQ--------EFVLAFANIEKGNVVPT 150 >gi|89098597|ref|ZP_01171479.1| hypothetical protein B14911_00370 [Bacillus sp. NRRL B-14911] gi|89086559|gb|EAR65678.1| hypothetical protein B14911_00370 [Bacillus sp. NRRL B-14911] Length = 156 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 79/156 (50%), Gaps = 6/156 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + ++ P+++E++ V I ++E K L++F++++ G + + +C +S+ +S Sbjct: 4 VTETVEELVTPIVDELNLELVDIEYVKEGKEWFLRVFIDKEQG-VDIEECGLVSERLSEK 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + I +Y LEVSSPG +RP+ ++ D+ G V + ++ GK+ Sbjct: 63 LDELDPIPYNYFLEVSSPGAERPLKKEKDYKSAIGKNVLIKTYEPIDGEKTFEGKLTQFD 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +E + I+I ++ + +ARL VT Sbjct: 123 GETVTVEVRVKTRIK----TISIPYEKVANARLAVT 154 >gi|184155205|ref|YP_001843545.1| hypothetical protein LAF_0729 [Lactobacillus fermentum IFO 3956] gi|227514705|ref|ZP_03944754.1| protein of hypothetical function DUF150 [Lactobacillus fermentum ATCC 14931] gi|260662295|ref|ZP_05863191.1| UPF0090 protein [Lactobacillus fermentum 28-3-CHN] gi|259585802|sp|B2GBN3|RIMP_LACF3 RecName: Full=Ribosome maturation factor rimP gi|183226549|dbj|BAG27065.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956] gi|227086909|gb|EEI22221.1| protein of hypothetical function DUF150 [Lactobacillus fermentum ATCC 14931] gi|260553678|gb|EEX26570.1| UPF0090 protein [Lactobacillus fermentum 28-3-CHN] Length = 159 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 79/162 (48%), Gaps = 8/162 (4%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++++++P++ E +F ++ ++E K+ L+++++++ G +TL DC +S Sbjct: 1 MSNKTVVETVTALVEPILAEHNFELYEVEFVQEAKSWYLRVYIDKE-GGITLEDCALVSD 59 Query: 75 AISPILDVENI--IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 +S LD + I Y LEVSSPG +RP+ ++ D+ R V + + Sbjct: 60 QLSEQLDSADPDPIPQAYFLEVSSPGAERPLKKEVDYQRALDQYVNVSLYQQIDGHKVFE 119 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G + S +E + + Q+ I D + ARL + Sbjct: 120 GYLRQLSPDELTIEYMDKTRQK----QVVIPRDKVAKARLAI 157 >gi|16800426|ref|NP_470694.1| hypothetical protein lin1358 [Listeria innocua Clip11262] gi|34222948|sp|Q92C33|RIMP_LISIN RecName: Full=Ribosome maturation factor rimP gi|16413831|emb|CAC96589.1| lin1358 [Listeria innocua Clip11262] gi|313619130|gb|EFR90920.1| conserved hypothetical protein [Listeria innocua FSL S4-378] Length = 155 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 74/155 (47%), Gaps = 6/155 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + +++ P+ +E+ V I+ +E N L+IF+++ DG + + +C +S+ +S Sbjct: 4 VLEQVEAIVAPITDELQLELVDIAFEKEGPNWFLRIFIDK-DGGVDIDECAAVSEKVSEK 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +D + I +Y LEVSSPG +RP+ ++ DF G V ++ G ++ Sbjct: 63 MDESDPITQNYFLEVSSPGAERPLKKEQDFENAVGKYVHVTSYEPIDGRKMWEGTLVSYD 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 T + + K + I D + ARL + Sbjct: 123 GTTLVITITDKTRK----ITCEIPKDKVAKARLAI 153 >gi|148976709|ref|ZP_01813396.1| hypothetical protein VSWAT3_19956 [Vibrionales bacterium SWAT-3] gi|145964060|gb|EDK29318.1| hypothetical protein VSWAT3_19956 [Vibrionales bacterium SWAT-3] Length = 151 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 76/156 (48%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ ++ + + V + + + L+I+++ +G + + DC E+S +S Sbjct: 2 TGLERQLTEMLDAPVAASGYELVGLEFIRAGEHSTLRIYIDSPNG-INVDDCAEVSHQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++DVE+ I Y LEVSSPG++RP+ + + ++ GH V+ + ++ G+++K G I Sbjct: 61 AVMDVEDPISVAYNLEVSSPGLERPLFKAEHYQQFIGHEVSIVLKMAVGNRRKWKGDIQS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E + E ++ A LI Sbjct: 121 IEGETVKVLVEGQEE--------EFVLSNIAKANLI 148 >gi|157692342|ref|YP_001486804.1| hypothetical protein BPUM_1562 [Bacillus pumilus SAFR-032] gi|194014514|ref|ZP_03053131.1| protein YlxS (P15A) [Bacillus pumilus ATCC 7061] gi|166979791|sp|A8FDC7|RIMP_BACP2 RecName: Full=Ribosome maturation factor rimP gi|157681100|gb|ABV62244.1| hypothetical protein BPUM_1562 [Bacillus pumilus SAFR-032] gi|194013540|gb|EDW23105.1| protein YlxS (P15A) [Bacillus pumilus ATCC 7061] Length = 157 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + +S ++QP+++ + V + ++E N L++F++ D G + + +C ++S+A+S Sbjct: 5 VVDVVSEMVQPILDGLQLELVDVEFVKEGQNWFLRVFIDSDKG-VDIEECAKVSEALSEK 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + I +Y LEVSSPG +RP+ +K+DF + G V + ++ G++ Sbjct: 64 LDEADPISQNYFLEVSSPGAERPLKKKADFEKALGKNVFMKTYEPIDGEKAFEGELTSFD 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + + + K +I I ++ + +ARL V+ Sbjct: 124 GEIATVTVKIKTRKK----EINIPYEKIANARLAVS 155 >gi|152978791|ref|YP_001344420.1| hypothetical protein Asuc_1119 [Actinobacillus succinogenes 130Z] gi|171704316|sp|A6VND8|RIMP_ACTSZ RecName: Full=Ribosome maturation factor rimP gi|150840514|gb|ABR74485.1| protein of unknown function DUF150 [Actinobacillus succinogenes 130Z] Length = 151 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 77/154 (50%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ ++Q +E++ I + +++F++++ G +++ DC ++S+ +S I Sbjct: 4 LEQNLQEMLQGSVEDLGCELWGIECQRAGRFMTVRLFIDKE-GGVSVDDCADVSRQVSAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ S + R+ G + + + D++K GK+ Sbjct: 63 LDVEDPITDKYNLEVSSPGLDRPLFTLSQYERFIGEDITIHLRIPVSDRRKWQGKLEKIE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + + + F ++ A +I Sbjct: 123 NDTVTLTVDGQPQV--------FVFGNIQKANII 148 >gi|108761060|ref|YP_630294.1| hypothetical protein MXAN_2065 [Myxococcus xanthus DK 1622] gi|122389560|sp|Q1DAM9|RIMP_MYXXD RecName: Full=Ribosome maturation factor rimP gi|108464940|gb|ABF90125.1| conserved hypothetical protein [Myxococcus xanthus DK 1622] Length = 161 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 14/164 (8%) Query: 16 FGDMGLAGDISS----VIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCE 70 + L + +++P++ V + L E+ +L++F+++ G + L +C Sbjct: 1 MSEKNLKQTVEERALALLEPIVAGEGLELVDLEFLREREGWVLRLFIDKPGGRVGLDECT 60 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD--K 128 ++S+A+ P LDVE+ I Y LEVSSPG+DRP+ + + F R G V + G+ + Sbjct: 61 QVSRAVDPSLDVEDFIPHEYNLEVSSPGVDRPLRKPTHFERVKGQQVKVKTFGPVGEPPR 120 Query: 129 QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + G + + G +E E G I F + A L Sbjct: 121 KNFTGTLTEVAGDGISVEVEGAG-------TFHILFKDIAKANL 157 >gi|332976857|gb|EGK13682.1| protein of hypothetical function DUF150 [Desmospora sp. 8437] Length = 170 Score = 174 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 74/155 (47%), Gaps = 9/155 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + ++QP++ E +E KN +L+++++R DG + L DC +S+ + + Sbjct: 22 VTEAVEEMVQPILAEEGLELYDTEYTKEGKNWILRVYIDRPDGKVDLDDCGRVSERLGEV 81 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD E+ + G Y LEVSSPG +RP+ + + F G + ++K G + S Sbjct: 82 LDREDPLTGQYFLEVSSPGAERPLKKPAHFEAAVGKRIFLNTFEPVDGRKKFEGVLTRYS 141 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + E + I + + ARL++ Sbjct: 142 PESLTVETD--------EGAVEIPTEKVAKARLVL 168 >gi|127513757|ref|YP_001094954.1| hypothetical protein Shew_2829 [Shewanella loihica PV-4] gi|126639052|gb|ABO24695.1| protein of unknown function DUF150 [Shewanella loihica PV-4] Length = 161 Score = 174 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 77/161 (47%), Gaps = 10/161 (6%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEEL 72 R L + ++ +E + + ++ K+ +L+++++ ++G + + DC ++ Sbjct: 7 RGVTLATLESKLEQMLIAPVEALGHSLWGLEYVQAGKHSVLRVYIDNENG-IFIDDCADV 65 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+ IS +LDVE+ I Y LEVSSPG+DRP+ + R+ G V ++ + + L Sbjct: 66 SRQISAVLDVEDPISTEYTLEVSSPGVDRPLFTAEQYARYLGETVKVQLTMPVAGSRNLK 125 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 G + G L + ++ I+ D++ LI Sbjct: 126 GTVAGVEGQMLTLTVDGN--------ELIIALDNIRKGNLI 158 >gi|229918665|ref|YP_002887311.1| hypothetical protein EAT1b_2952 [Exiguobacterium sp. AT1b] gi|259585773|sp|C4L660|RIMP_EXISA RecName: Full=Ribosome maturation factor rimP gi|229470094|gb|ACQ71866.1| protein of unknown function DUF150 [Exiguobacterium sp. AT1b] Length = 156 Score = 174 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 6/156 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + S+ P++E + V + ++E + L++++++ G + L DC +++ +S Sbjct: 4 ITEVVESIALPIVERENMELVDVEFVKEGPDWFLRVYIDKP-GGVDLDDCVNINEQLSEK 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 L+ + IE Y L+VSSPG +RP+ + SDF R G V + ++ G + Sbjct: 63 LNETDPIEQAYYLDVSSPGAERPLKKPSDFERAVGKNVYMKTFAPIDGAKEFEGILTAYD 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +E + K +++ D + ARL VT Sbjct: 123 GETVVIETRIKTRKKA----VSLPVDKIAQARLAVT 154 >gi|169827164|ref|YP_001697322.1| hypothetical protein Bsph_1594 [Lysinibacillus sphaericus C3-41] gi|226734725|sp|B1HR01|RIMP_LYSSC RecName: Full=Ribosome maturation factor rimP gi|168991652|gb|ACA39192.1| UPF0090 protein [Lysinibacillus sphaericus C3-41] Length = 156 Score = 174 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 38/151 (25%), Positives = 80/151 (52%), Gaps = 5/151 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I + +P+++E++ V I ++E +N L+++V+ +G + + C ++S+ +S +LD + Sbjct: 8 IEELAKPIVDELNLELVDIEFVKEGRNWFLRVYVDTPEGGIDIDQCAQVSERLSLLLDEK 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I +Y LEVSSPG +RP+ + +DF + G + + D ++ G + E Sbjct: 68 DPITQNYYLEVSSPGAERPLKKDADFEKAIGKFIYVKTYKPIKDMKEFQGYLTSYEEHTL 127 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + K + + I + + ARL + Sbjct: 128 VMEVRIKTRK----ITVTIEQEKIALARLAI 154 >gi|30263820|ref|NP_846197.1| hypothetical protein BA_3954 [Bacillus anthracis str. Ames] gi|42782905|ref|NP_980152.1| hypothetical protein BCE_3855 [Bacillus cereus ATCC 10987] gi|47529244|ref|YP_020593.1| hypothetical protein GBAA_3954 [Bacillus anthracis str. 'Ames Ancestor'] gi|47569094|ref|ZP_00239783.1| YlxS-like protein [Bacillus cereus G9241] gi|49186667|ref|YP_029919.1| hypothetical protein BAS3668 [Bacillus anthracis str. Sterne] gi|49478391|ref|YP_037878.1| hypothetical protein BT9727_3558 [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141671|ref|YP_085158.1| hypothetical protein BCZK3576 [Bacillus cereus E33L] gi|165872607|ref|ZP_02217238.1| conserved hypothetical protein [Bacillus anthracis str. A0488] gi|167635806|ref|ZP_02394115.1| conserved hypothetical protein [Bacillus anthracis str. A0442] gi|167639838|ref|ZP_02398107.1| conserved hypothetical protein [Bacillus anthracis str. A0193] gi|170687819|ref|ZP_02879033.1| conserved hypothetical protein [Bacillus anthracis str. A0465] gi|170706785|ref|ZP_02897243.1| conserved hypothetical protein [Bacillus anthracis str. A0389] gi|177652089|ref|ZP_02934635.1| conserved hypothetical protein [Bacillus anthracis str. A0174] gi|190568460|ref|ZP_03021367.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I] gi|196036915|ref|ZP_03104299.1| conserved hypothetical protein [Bacillus cereus W] gi|196042165|ref|ZP_03109448.1| conserved hypothetical protein [Bacillus cereus NVH0597-99] gi|196044678|ref|ZP_03111913.1| conserved hypothetical protein [Bacillus cereus 03BB108] gi|206978439|ref|ZP_03239306.1| conserved hypothetical protein [Bacillus cereus H3081.97] gi|217961237|ref|YP_002339805.1| hypothetical protein BCAH187_A3864 [Bacillus cereus AH187] gi|218904945|ref|YP_002452779.1| hypothetical protein BCAH820_3829 [Bacillus cereus AH820] gi|222097261|ref|YP_002531318.1| hypothetical protein BCQ_3601 [Bacillus cereus Q1] gi|225865796|ref|YP_002751174.1| hypothetical protein BCA_3913 [Bacillus cereus 03BB102] gi|227813275|ref|YP_002813284.1| hypothetical protein BAMEG_0677 [Bacillus anthracis str. CDC 684] gi|229603147|ref|YP_002868055.1| hypothetical protein BAA_3978 [Bacillus anthracis str. A0248] gi|254683476|ref|ZP_05147336.1| hypothetical protein BantC_06445 [Bacillus anthracis str. CNEVA-9066] gi|254735855|ref|ZP_05193561.1| hypothetical protein BantWNA_11921 [Bacillus anthracis str. Western North America USA6153] gi|254739619|ref|ZP_05197313.1| hypothetical protein BantKB_01112 [Bacillus anthracis str. Kruger B] gi|254756008|ref|ZP_05208039.1| hypothetical protein BantV_26379 [Bacillus anthracis str. Vollum] gi|254759331|ref|ZP_05211356.1| hypothetical protein BantA9_13571 [Bacillus anthracis str. Australia 94] gi|301055307|ref|YP_003793518.1| nus operon associated protein [Bacillus anthracis CI] gi|34222814|sp|Q81WL9|RIMP_BACAN RecName: Full=Ribosome maturation factor rimP gi|51316695|sp|Q732Q5|RIMP_BACC1 RecName: Full=Ribosome maturation factor rimP gi|81395111|sp|Q6HEZ8|RIMP_BACHK RecName: Full=Ribosome maturation factor rimP gi|81686585|sp|Q636K9|RIMP_BACCZ RecName: Full=Ribosome maturation factor rimP gi|226706060|sp|B7JJ95|RIMP_BACC0 RecName: Full=Ribosome maturation factor rimP gi|226706064|sp|B7HLF0|RIMP_BACC7 RecName: Full=Ribosome maturation factor rimP gi|254765081|sp|B9IVA5|RIMP_BACCQ RecName: Full=Ribosome maturation factor rimP gi|254803820|sp|C1EP39|RIMP_BACC3 RecName: Full=Ribosome maturation factor rimP gi|254803830|sp|C3P5L9|RIMP_BACAA RecName: Full=Ribosome maturation factor rimP gi|254806572|sp|C3L7B0|RIMP_BACAC RecName: Full=Ribosome maturation factor rimP gi|259585701|sp|A0RHI8|RIMP_BACAH RecName: Full=Ribosome maturation factor rimP gi|30258464|gb|AAP27683.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gi|42738832|gb|AAS42760.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gi|47504392|gb|AAT33068.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames Ancestor'] gi|47554256|gb|EAL12618.1| YlxS-like protein [Bacillus cereus G9241] gi|49180594|gb|AAT55970.1| conserved hypothetical protein [Bacillus anthracis str. Sterne] gi|49329947|gb|AAT60593.1| conserved hypothetical protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51975140|gb|AAU16690.1| conserved hypothetical protein [Bacillus cereus E33L] gi|164711639|gb|EDR17185.1| conserved hypothetical protein [Bacillus anthracis str. A0488] gi|167512239|gb|EDR87616.1| conserved hypothetical protein [Bacillus anthracis str. A0193] gi|167528763|gb|EDR91521.1| conserved hypothetical protein [Bacillus anthracis str. A0442] gi|170128203|gb|EDS97072.1| conserved hypothetical protein [Bacillus anthracis str. A0389] gi|170668135|gb|EDT18884.1| conserved hypothetical protein [Bacillus anthracis str. A0465] gi|172082458|gb|EDT67523.1| conserved hypothetical protein [Bacillus anthracis str. A0174] gi|190560464|gb|EDV14442.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I] gi|195990470|gb|EDX54454.1| conserved hypothetical protein [Bacillus cereus W] gi|196024713|gb|EDX63385.1| conserved hypothetical protein [Bacillus cereus 03BB108] gi|196027017|gb|EDX65641.1| conserved hypothetical protein [Bacillus cereus NVH0597-99] gi|206743354|gb|EDZ54794.1| conserved hypothetical protein [Bacillus cereus H3081.97] gi|217067014|gb|ACJ81264.1| conserved hypothetical protein [Bacillus cereus AH187] gi|218536944|gb|ACK89342.1| conserved hypothetical protein [Bacillus cereus AH820] gi|221241319|gb|ACM14029.1| conserved hypothetical protein [Bacillus cereus Q1] gi|225790678|gb|ACO30895.1| conserved hypothetical protein [Bacillus cereus 03BB102] gi|227005285|gb|ACP15028.1| conserved hypothetical protein [Bacillus anthracis str. CDC 684] gi|229267555|gb|ACQ49192.1| conserved hypothetical protein [Bacillus anthracis str. A0248] gi|300377476|gb|ADK06380.1| protein associated with nus operon [Bacillus cereus biovar anthracis str. CI] gi|324327711|gb|ADY22971.1| ribosome maturation protein RimP [Bacillus thuringiensis serovar finitimus YBT-020] Length = 156 Score = 174 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 44/159 (27%), Positives = 82/159 (51%), Gaps = 6/159 (3%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAI 76 D + + + QP++EE++ V + ++E + L++F++ + G + + +C +S+ + Sbjct: 2 DKKVTEVVEAFAQPIVEELNLELVDVEYVKEGQDWFLRVFIDSEKG-VDIEECGAVSERL 60 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ GK++ Sbjct: 61 SEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMFEGKML 120 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 T L + K +I I D + +ARL VT Sbjct: 121 SYDGTTITLLLTIKTRKK----EIQIPMDKVANARLAVT 155 >gi|254361244|ref|ZP_04977387.1| hypothetical protein MHA_0829 [Mannheimia haemolytica PHL213] gi|153092740|gb|EDN73783.1| hypothetical protein MHA_0829 [Mannheimia haemolytica PHL213] Length = 153 Score = 174 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + ++ IE + F V I L ++++++++ G +T+ DC ++S+ +S I Sbjct: 4 LEQKLEDLVLDSIEALGFELVGIECQRAGRFLTVRLYIDKE-GGVTIDDCSDVSRQVSAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 DVE+ I Y LEVSSPG+DRP+ + + R+ G V + + D++K GKI Sbjct: 63 FDVEDPIADKYNLEVSSPGLDRPLFTVAHYERFIGQDVVIHLRIPMFDRRKWQGKIKQVE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L E + +F ++ A L+ Sbjct: 123 GDFITLTVENEDRQ--------FAFGNIQKANLV 148 >gi|90022355|ref|YP_528182.1| hypothetical protein Sde_2710 [Saccharophagus degradans 2-40] gi|123395825|sp|Q21H59|RIMP_SACD2 RecName: Full=Ribosome maturation factor rimP gi|89951955|gb|ABD81970.1| protein of unknown function DUF150 [Saccharophagus degradans 2-40] Length = 151 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 43/155 (27%), Positives = 81/155 (52%), Gaps = 10/155 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 G + ++ PV+E + + L ++ K LL+IF+E++ G + + DCE +S+ +S Sbjct: 3 GKETRLEKMLAPVVESLGCEFWGLELRMQGKQSLLRIFIEKEAG-VGVEDCENVSRQVSA 61 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LDVE+ I G Y LEVSSPG+DRP+ F R+ G V+ + + ++ GK+ Sbjct: 62 VLDVEDPISGEYTLEVSSPGMDRPLFTLDHFTRFVGEHVSLRLRTAFDGRRNFSGKLTAV 121 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + L ++ + + F+ + A+++ Sbjct: 122 EDDEVIL--------LIDAEEYILPFELIDKAQVV 148 >gi|52425501|ref|YP_088638.1| hypothetical protein MS1446 [Mannheimia succiniciproducens MBEL55E] gi|81386924|sp|Q65SK7|RIMP_MANSM RecName: Full=Ribosome maturation factor rimP gi|52307553|gb|AAU38053.1| unknown [Mannheimia succiniciproducens MBEL55E] Length = 151 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 78/154 (50%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ ++Q +E++ I + ++++++++ G +T+ DC ++S+ +S I Sbjct: 4 LEQNLQQMLQGSVEDLGCELWGIECQRAGRFMTVRLYIDKE-GGVTVDDCADVSRQVSAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ F R+ G ++ + + D++K GK+ Sbjct: 63 LDVEDPIADKYNLEVSSPGLDRPLFTLEQFQRYVGQEISVHLRIPMLDRRKWQGKLERIE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + + + + + ++ A +I Sbjct: 123 GDMLTLIVDDQ--------EQSFALSNIQKANVI 148 >gi|261492532|ref|ZP_05989085.1| hypothetical protein COK_0954 [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496807|ref|ZP_05993181.1| hypothetical protein COI_2524 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307554|gb|EEY08883.1| hypothetical protein COI_2524 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311691|gb|EEY12841.1| hypothetical protein COK_0954 [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 153 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + ++ IE + F V I L ++++++++ G +T+ DC ++S+ +S I Sbjct: 4 LEQKLEDLVLDSIEALGFELVGIECQRAGRFLTVRLYIDKE-GGVTIDDCSDVSRQVSAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 DVE+ I Y LEVSSPG+DRP+ + + R+ G V + + D++K GKI Sbjct: 63 FDVEDPIADKYNLEVSSPGLDRPLFTVAHYERFIGQDVVIHLRIPMFDRRKWQGKIKQVE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L E + +F ++ A L+ Sbjct: 123 GDFITLTVENEDCQ--------FAFGNIQKANLV 148 >gi|299534744|ref|ZP_07048074.1| hypothetical protein BFZC1_01897 [Lysinibacillus fusiformis ZC1] gi|298729832|gb|EFI70377.1| hypothetical protein BFZC1_01897 [Lysinibacillus fusiformis ZC1] Length = 158 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 38/151 (25%), Positives = 81/151 (53%), Gaps = 5/151 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I + +P+++E++ V I ++E +N L+++V+ +G + + C ++S+ +S +LD + Sbjct: 8 IEELAKPIVDELNLELVDIEFVKEGRNWFLRVYVDTPEGGIDIDQCAQVSERLSLLLDEK 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I +Y LEVSSPG +RP+ + +DF++ G + + D ++ G + E Sbjct: 68 DPITQNYYLEVSSPGAERPLKKDTDFVKAVGKFIYVKTYEPIKDMKEFQGYLTSYDEHTL 127 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + K + + I + + ARL + Sbjct: 128 VMEVRIKTRK----ITVTIEQEKIALARLAI 154 >gi|153876665|ref|ZP_02003868.1| Protein of unknown function DUF150 [Beggiatoa sp. PS] gi|152066871|gb|EDN66132.1| Protein of unknown function DUF150 [Beggiatoa sp. PS] Length = 144 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 11/153 (7%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L + ++ P+I + + V + L LL+++++ G + L DCE +S +S +L Sbjct: 2 LDNQLQQLLAPIIIGLGYELVGVERLSS--TLLRVYIDHPKG-INLSDCERVSYQVSGVL 58 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DV+N I+G Y LEVSSPG DRP+ F R+ GH V + ++ G + + Sbjct: 59 DVQNPIKGRYTLEVSSPGWDRPLFTLEHFKRFVGHKVKVSLRQPKEGQRHFTGLLQAIED 118 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + +E + + ++ + A L+ Sbjct: 119 RNVIV--------VADETEYCLPYEKIDKAHLV 143 >gi|91228265|ref|ZP_01262201.1| hypothetical protein V12G01_21798 [Vibrio alginolyticus 12G01] gi|91188142|gb|EAS74444.1| hypothetical protein V12G01_21798 [Vibrio alginolyticus 12G01] Length = 141 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 75/147 (51%), Gaps = 10/147 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 ++ + + V + + + L+I+++ ++G + + DC E+S +S +LDVE+ I Sbjct: 1 MLDAPVAASGYELVGLEFIRAGAHSTLRIYIDHENG-INVDDCAEVSHQVSAVLDVEDPI 59 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE 146 Y LEVSSPG++RP+ + + + ++ GH V+ + ++ +++K G I G + Sbjct: 60 SVAYSLEVSSPGLERPLFKAAHYEQFIGHEVSIVLKMAVANRRKWKGIIHGVDGETVTIT 119 Query: 147 KEKRGEKDMNELQIAISFDSLLSARLI 173 + + E + ++ A LI Sbjct: 120 VDGQQE--------EFALSNISKANLI 138 >gi|157320498|gb|ABV39595.1| protein of unknown function DUF150 [Serratia proteamaculans 568] Length = 140 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 38/146 (26%), Positives = 72/146 (49%), Gaps = 9/146 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 ++ +E + F V I + + L+I+++ ++G + + DC ++S +S +LDVE I Sbjct: 1 MLSAPVEALGFELVGIEFIRARQSTLRIYIDSENG-INVDDCADVSHQVSAVLDVEEPIT 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LEVSSPG+DRPM + R+ G V+ + ++ +++K G I + Sbjct: 60 VAYNLEVSSPGLDRPMFTAEHYTRFLGDEVSLVLRMAVQNRRKWQGIIKSVDGEMITVAV 119 Query: 148 EKRGEKDMNELQIAISFDSLLSARLI 173 E + E + ++ A L+ Sbjct: 120 EGKDEV--------FALSNIQKANLV 137 >gi|30021906|ref|NP_833537.1| hypothetical protein BC3815 [Bacillus cereus ATCC 14579] gi|206972652|ref|ZP_03233593.1| conserved hypothetical protein [Bacillus cereus AH1134] gi|218235854|ref|YP_002368618.1| hypothetical protein BCB4264_A3915 [Bacillus cereus B4264] gi|296504312|ref|YP_003666012.1| hypothetical protein BMB171_C3482 [Bacillus thuringiensis BMB171] gi|34222809|sp|Q812X5|RIMP_BACCR RecName: Full=Ribosome maturation factor rimP gi|226706108|sp|B7HDU0|RIMP_BACC4 RecName: Full=Ribosome maturation factor rimP gi|29897462|gb|AAP10738.1| hypothetical Cytosolic Protein [Bacillus cereus ATCC 14579] gi|206732409|gb|EDZ49590.1| conserved hypothetical protein [Bacillus cereus AH1134] gi|218163811|gb|ACK63803.1| conserved hypothetical protein [Bacillus cereus B4264] gi|296325364|gb|ADH08292.1| hypothetical protein BMB171_C3482 [Bacillus thuringiensis BMB171] Length = 156 Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 45/159 (28%), Positives = 83/159 (52%), Gaps = 6/159 (3%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAI 76 D + + + QP++EE++ V + ++E + L++F++ + G + + +C +S+ + Sbjct: 2 DKKVTEVVEAFAQPIVEELNLELVDVEYVKEGQDWFLRVFIDSEKG-VDIEECGAVSERL 60 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ GK++ Sbjct: 61 SEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMFEGKLL 120 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 T L + K +I IS D + +ARL VT Sbjct: 121 SYDGTTITLLLTIKTRKK----EIQISMDKVANARLAVT 155 >gi|238918422|ref|YP_002931936.1| hypothetical protein NT01EI_0465 [Edwardsiella ictaluri 93-146] gi|238867990|gb|ACR67701.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 140 Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 73/146 (50%), Gaps = 9/146 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I +E + F V I + ++ L+I+++ ++G +T+ +C ++S +S +LDVE+ I Sbjct: 1 MITAPVEALGFELVGIEFIRGRHSTLRIYIDSEEG-ITVDNCADVSHQVSAVLDVEDPIS 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LEVSSPG++RP+ + R+ V + ++ +++K G I + Sbjct: 60 VAYYLEVSSPGMERPLFIAEHYTRFLNEEVTLVLRMAMQNRRKWQGIIKAVDGEMITVTV 119 Query: 148 EKRGEKDMNELQIAISFDSLLSARLI 173 + + E + ++ A L+ Sbjct: 120 DGKDEV--------FALSNVQKANLV 137 >gi|288556946|ref|YP_003428881.1| hypothetical protein BpOF4_19750 [Bacillus pseudofirmus OF4] gi|288548106|gb|ADC51989.1| hypothetical protein BpOF4_19750 [Bacillus pseudofirmus OF4] Length = 156 Score = 174 bits (441), Expect = 6e-42, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 75/155 (48%), Gaps = 6/155 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + ++ ++ P+++E++ V + +E N L++F++ D G + L DC ++S+ +S Sbjct: 5 VTDIVAELVTPLLDELNLELVDVEFKKEGPNWFLRVFIDSDTG-VDLEDCGKVSEQLSEK 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + I Y LEVSSPG +RP+ + D + G V ++ G + Sbjct: 64 LDEMDPIPQAYFLEVSSPGAERPLKKVKDLEKAVGKNVHVTTYEPVDGEKAFEGMLQSFD 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + + K E I +D + +ARL + Sbjct: 124 GEVLTIEVKIKTRKKSYE----IPYDKVANARLAI 154 >gi|146283632|ref|YP_001173785.1| hypothetical protein PST_3312 [Pseudomonas stutzeri A1501] gi|145571837|gb|ABP80943.1| conserved hypothetical protein [Pseudomonas stutzeri A1501] Length = 182 Score = 174 bits (441), Expect = 6e-42, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 78/169 (46%), Gaps = 10/169 (5%) Query: 6 FLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNM 64 R + +++ PV+E + ++ I + + ++ LL+++++ +G + Sbjct: 19 HFSFVQHARGTSMSSKLEQLQALLAPVVEALGYQCWGIEFISQGRHSLLRVYIDHANG-I 77 Query: 65 TLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS 124 + DCE++S+ +S +LDVE+ I Y LEVSSPG+DRP+ ++ G V ++ Sbjct: 78 LIDDCEKVSRQLSGVLDVEDPISVDYTLEVSSPGMDRPLFTIEQYVAHVGDQVKIKLRSP 137 Query: 125 SGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 ++ G + G E + + + + D + A +I Sbjct: 138 FEGRRNFQGLLRGVEEQDVVVLVDDH--------EYLLPIDMIDKANII 178 >gi|315634095|ref|ZP_07889384.1| YhbC family protein [Aggregatibacter segnis ATCC 33393] gi|315477345|gb|EFU68088.1| YhbC family protein [Aggregatibacter segnis ATCC 33393] Length = 151 Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 78/154 (50%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 L + ++Q +E++ I +++F++++ G +T+ DC ++S+ +S + Sbjct: 4 LEQKLQDLLQGSVEDLGCELWGIECQRVGRYLTVRLFIDKE-GGVTVDDCADVSRQVSAV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ + + R+ G + + + D++K G++ Sbjct: 63 LDVEDPIADKYNLEVSSPGLDRPLFTLAQYTRYVGQEIVVHLRIPVADRRKWQGELAKIE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L +K+ + ++F ++ A ++ Sbjct: 123 NDMITLIVDKQ--------EQVLAFGNIQKANVV 148 >gi|313623921|gb|EFR94029.1| conserved hypothetical protein [Listeria innocua FSL J1-023] Length = 155 Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 74/155 (47%), Gaps = 6/155 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + +++ P+ +E+ V I+ +E N L+IF+++ DG + + +C +S+ +S Sbjct: 4 VLEQVEAIVAPITDELQLELVDIAFEKEGPNWFLRIFIDK-DGGVDIDECAAVSEKVSEK 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +D + I +Y LEVSSPG +RP+ ++ DF G V ++ G ++ Sbjct: 63 MDESDPITQNYFLEVSSPGAERPLKKEQDFENAVGKYVHVTSYEPIDGRKMWEGTLVSYD 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 T + + K + I D + ARL + Sbjct: 123 GTILVITITDKTRK----ITCEIPKDKVAKARLAI 153 >gi|78044682|ref|YP_360590.1| hypothetical protein CHY_1770 [Carboxydothermus hydrogenoformans Z-2901] gi|91208344|sp|Q3AB94|RIMP_CARHZ RecName: Full=Ribosome maturation factor rimP gi|77996797|gb|ABB15696.1| conserved hypothetical protein [Carboxydothermus hydrogenoformans Z-2901] Length = 154 Score = 173 bits (440), Expect = 8e-42, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 80/157 (50%), Gaps = 10/157 (6%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQA 75 + G+ + + + V E++ V + ++E L+I++++D+G + L DC+ S+ Sbjct: 3 RNKGIEQKVWPLAERVGGELNLEVVDVEFVKEAGRYFLRIYIDKDEG-VDLDDCQNFSER 61 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I ILD E+ I Y LEVSSPGI+RP+ + +DF ++ G + + +++ GK+ Sbjct: 62 IGVILDEEDPIPQSYYLEVSSPGIERPLKKLADFEKFAGREAQIKTFAAIEGQKQFKGKL 121 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +G + + D + ++ I + + A L Sbjct: 122 LGVRDGQVVI--------DAGKGEVQIPLEQIAKANL 150 >gi|84387287|ref|ZP_00990308.1| hypothetical protein V12B01_22696 [Vibrio splendidus 12B01] gi|86148619|ref|ZP_01066902.1| hypothetical protein MED222_21704 [Vibrio sp. MED222] gi|218710447|ref|YP_002418068.1| hypothetical protein VS_2484 [Vibrio splendidus LGP32] gi|254765031|sp|B7VJH9|RIMP_VIBSL RecName: Full=Ribosome maturation factor rimP gi|84377934|gb|EAP94796.1| hypothetical protein V12B01_22696 [Vibrio splendidus 12B01] gi|85833610|gb|EAQ51785.1| hypothetical protein MED222_21704 [Vibrio sp. MED222] gi|218323466|emb|CAV19643.1| conserved hypothetical protein [Vibrio splendidus LGP32] Length = 151 Score = 173 bits (440), Expect = 9e-42, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 76/156 (48%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ ++ + + V + + + L+I+++ +G + + DC E+S +S Sbjct: 2 TGLERQLTEMLDAPVAASGYELVGLEFIRAGEHSTLRIYIDSPNG-INVDDCSEVSHQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++DVE+ I Y LEVSSPG++RP+ + + ++ GH V+ + ++ G+++K G I Sbjct: 61 AVMDVEDPISVAYNLEVSSPGLERPLFKAEHYQQFIGHEVSIVLKMAVGNRRKWKGDIQS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E + E ++ A LI Sbjct: 121 IEGETVKVLVEGQEE--------EFVLSNIAKANLI 148 >gi|291523275|emb|CBK81568.1| Uncharacterized protein conserved in bacteria [Coprococcus catus GD/7] Length = 154 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 44/141 (31%), Positives = 79/141 (56%), Gaps = 2/141 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 +++ P++E F V + ++E N L+ ++++++G +T+ DCEE+S+A+S +L Sbjct: 7 ESRTEAMLMPIVEAKGFELVDVEWVKEGANWYLRAYIDKENG-ITVDDCEEVSRALSDLL 65 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D E+ I +Y LEVSSPG+DRP+ ++ DF R G V ++ + +++ +G + E Sbjct: 66 DEEDFISENYILEVSSPGLDRPLKKEKDFARSIGKDVEVKLFKAINKEKEFVGILKAYDE 125 Query: 141 TGFFLEKEKRGEKDMNELQIA 161 LE E E IA Sbjct: 126 DTVTLEMEDETEMQFKRSDIA 146 >gi|254721997|ref|ZP_05183786.1| hypothetical protein BantA1_05952 [Bacillus anthracis str. A1055] Length = 156 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 44/159 (27%), Positives = 82/159 (51%), Gaps = 6/159 (3%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAI 76 D + + + QP++EE++ V + ++E + L++F++ + G + + +C +S+ + Sbjct: 2 DKKVTEVVEAFAQPIVEELNLEFVDVEYVKEGQDWFLRVFIDSEKG-VDIEECGAVSERL 60 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ GK++ Sbjct: 61 SEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMFEGKML 120 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 T L + K +I I D + +ARL VT Sbjct: 121 SYDGTTITLLLTIKTRKK----EIQIPMDKVANARLAVT 155 >gi|300721536|ref|YP_003710811.1| hypothetical protein XNC1_0503 [Xenorhabdus nematophila ATCC 19061] gi|297628028|emb|CBJ88577.1| conserved hypothetical protein [Xenorhabdus nematophila ATCC 19061] Length = 140 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 73/146 (50%), Gaps = 9/146 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I +E + F V + + + L+++++ ++G +T+ +C ++S +S +LDVE+ I Sbjct: 1 MISAPVEALGFELVGLEFIRARVSTLRVYIDSEEG-ITVDNCADVSHQVSAVLDVEDPIS 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LE+SSPG++RP+ + R+ G V + ++ ++++ G I + Sbjct: 60 VLYNLEISSPGLERPLFTAEHYQRFIGEEVNVVLRMAMQNRRRWQGIIKAVDGEMITVTV 119 Query: 148 EKRGEKDMNELQIAISFDSLLSARLI 173 + + E + ++ A L+ Sbjct: 120 DGKDEV--------FALSNIQKANLV 137 >gi|34222833|sp|Q88DV5|RIMP_PSEPK RecName: Full=Ribosome maturation factor rimP Length = 158 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 40/154 (25%), Positives = 79/154 (51%), Gaps = 10/154 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++ PV+E + ++ I + + K+ +L+I+++++ G + + DCE +S+ S ILD Sbjct: 12 EQLQALLAPVVEGLGYQCWGIEYVSQGKHSVLRIYIDKE-GGILVDDCEAVSRQASAILD 70 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I Y LEVSSPG+DRP+ F G V ++ ++ G + G Sbjct: 71 VEDPISSEYTLEVSSPGMDRPLFTLEQFASHAGEQVKIKLRSPFEGRRNFQGLLRGV--- 127 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +E+ ++ + + DS+ A +I + Sbjct: 128 -----EEQDVVVQVDNQEFLLPIDSIDKANIIPS 156 >gi|165936752|ref|ZP_02225319.1| protein YhbC [Yersinia pestis biovar Orientalis str. IP275] gi|165915401|gb|EDR34011.1| protein YhbC [Yersinia pestis biovar Orientalis str. IP275] Length = 134 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 9/140 (6%) Query: 34 EEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLE 93 E + + V I + + L+I+++ DDG +T+ C ++S +S +LDVE+ I Y LE Sbjct: 1 EALGYELVGIEFIRGRQSTLRIYIDSDDG-ITVDACADVSHQVSAVLDVEDPITVAYNLE 59 Query: 94 VSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEK 153 VSSPG+DRPM + R+ G V + ++ +++K G I + + + E Sbjct: 60 VSSPGLDRPMFTAEHYTRYLGEEVTLVLRMAMQNRRKWQGIIKAVDGEMITVTVDGKDEV 119 Query: 154 DMNELQIAISFDSLLSARLI 173 + ++ A L+ Sbjct: 120 --------FALSNIQKANLV 131 >gi|259586209|sp|A3QGU7|RIMP_SHELP RecName: Full=Ribosome maturation factor rimP Length = 151 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 76/154 (49%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + ++ +E + + ++ K+ +L+++++ ++G + + DC ++S+ IS + Sbjct: 4 LESKLEQMLIAPVEALGHSLWGLEYVQAGKHSVLRVYIDNENG-IFIDDCADVSRQISAV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ + R+ G V ++ + + L G + G Sbjct: 63 LDVEDPISTEYTLEVSSPGVDRPLFTAEQYARYLGETVKVQLTMPVAGSRNLKGTVAGVE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + ++ I+ D++ LI Sbjct: 123 GQMLTLTVDGN--------ELIIALDNIRKGNLI 148 >gi|218288336|ref|ZP_03492635.1| protein of unknown function DUF150 [Alicyclobacillus acidocaldarius LAA1] gi|218241695|gb|EED08868.1| protein of unknown function DUF150 [Alicyclobacillus acidocaldarius LAA1] Length = 157 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 76/160 (47%), Gaps = 6/160 (3%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ P++E + V I +E KN L++++++ G + + DC +S+ Sbjct: 1 MTRDRVTEIVERLVLPIVEREAVELVDIEYTKEGKNWYLRVYIDKP-GGVDIDDCSRVSE 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 +S LD + I Y LEVSSPG +RP+ R +DF R G V + + G Sbjct: 60 QLSEELDRVDPIPNAYFLEVSSPGAERPLKRPADFERAVGRYVHVSLYEPLEGAKTHEGT 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ LE ++R + + +A+ + + ARL + Sbjct: 120 LVSYDGERLILEIKRRSKT----VTLAVPMEKIAHARLAL 155 >gi|167644003|ref|YP_001681666.1| hypothetical protein Caul_0030 [Caulobacter sp. K31] gi|259585739|sp|B0T164|RIMP_CAUSK RecName: Full=Ribosome maturation factor rimP gi|167346433|gb|ABZ69168.1| protein of unknown function DUF150 [Caulobacter sp. K31] Length = 199 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 53/168 (31%), Positives = 90/168 (53%), Gaps = 6/168 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ PV E + + V++ L+ LQI ER DG+M + DC +LS+AIS ILD Sbjct: 11 LVELLDPVAESVGYEIVRLRLMGGAEQRRLQIMAERPDGDMNVEDCAKLSRAISEILDAA 70 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I G Y LEVSSPG+DRP+ R DF + G V E+ + +++ G++ G + Sbjct: 71 DPISGEYTLEVSSPGVDRPLTRLKDFETYAGLEVRIELDRVAEGRKRFKGELAGVEDGQV 130 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAG 191 L E ++ + F+ ++ A+L++TD+L++ + G Sbjct: 131 GLNLEGE-----DDTTVYFPFEWIVDAKLVLTDQLMKRGAEQRAARVG 173 >gi|258511412|ref|YP_003184846.1| hypothetical protein Aaci_1431 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478138|gb|ACV58457.1| protein of unknown function DUF150 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 157 Score = 172 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 76/160 (47%), Gaps = 6/160 (3%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ P++E + V I +E KN L++++++ G + + DC +S+ Sbjct: 1 MTRDRVTEIVERLVLPIVEREAVELVDIEYTKEGKNWYLRVYIDKP-GGVDIDDCSRVSE 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 +S LD + I Y LEVSSPG +RP+ R +DF R G V + + G Sbjct: 60 QLSEELDRVDPIPNAYFLEVSSPGAERPLKRPADFERAVGRYVHVSLYEPLMGAKTHEGT 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ LE ++R + + +A+ + + ARL + Sbjct: 120 LVSYDGERLILEIKRRSKT----VTLAVPMEKIAHARLAL 155 >gi|330830890|ref|YP_004393842.1| ribosome maturation factor rimP [Aeromonas veronii B565] gi|328806026|gb|AEB51225.1| Ribosome maturation factor rimP [Aeromonas veronii B565] Length = 145 Score = 172 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 78/150 (52%), Gaps = 10/150 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +++ + + F I + K+ L+++++ + G +T+ +C E+S + I+DVE Sbjct: 1 MTDLLEAPVVALGFELWGIEFIRAGKHSTLRVYIDGEQG-VTVENCAEVSHQVGAIMDVE 59 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I Y LEVSSPG+DRP+ + + F ++ G A + +++ +++K G I Sbjct: 60 DPITEEYYLEVSSPGLDRPLFKVAHFEKYVGQEAAVTLRMATNNRRKFKGVIKAVQGDMI 119 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + + + ++F ++ A ++ Sbjct: 120 TLAVDGKDDV--------LAFTNIQKANIV 141 >gi|325276163|ref|ZP_08141968.1| ribosome maturation protein RimP [Pseudomonas sp. TJI-51] gi|324098700|gb|EGB96741.1| ribosome maturation protein RimP [Pseudomonas sp. TJI-51] Length = 152 Score = 172 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 40/154 (25%), Positives = 79/154 (51%), Gaps = 10/154 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++ PV+E + ++ I + + K+ +L+I+++++ G + + DCE +S+ S ILD Sbjct: 6 EQLQALLAPVVEGLGYQCWGIEFVSQGKHSVLRIYIDKE-GGILVDDCEAVSRQASAILD 64 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I Y LEVSSPG+DRP+ F G V ++ ++ G + G Sbjct: 65 VEDPISSEYTLEVSSPGMDRPLFTLEQFASHAGEQVKIKLRSPFEGRRNFQGLLRGV--- 121 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +E+ ++ + + DS+ A +I + Sbjct: 122 -----EEQDVVVQVDNQEFLLPIDSIDKANIIPS 150 >gi|325569919|ref|ZP_08145913.1| protein of hypothetical function DUF150 [Enterococcus casseliflavus ATCC 12755] gi|325157042|gb|EGC69210.1| protein of hypothetical function DUF150 [Enterococcus casseliflavus ATCC 12755] Length = 170 Score = 172 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 75/151 (49%), Gaps = 8/151 (5%) Query: 27 SVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILD--VE 83 ++ P+++ F V++ ++E KN L++F++++ G + + +C +S+ +S LD Sbjct: 23 DIVTPILDAQKFELVEVEFVKEGKNWFLRVFIDKE-GGIDIEECAFVSEQLSEQLDQCEP 81 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I Y LEVSSPG +RP+ +++D+ R G + + +++ G + E Sbjct: 82 DPIPQAYFLEVSSPGAERPLKKEADYQRAVGEYIHVSLYQPIDGEKQFEGFLQSFDENQL 141 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + E + I ++ ARL + Sbjct: 142 VM----KTRIKTREKERTIDRKNIAKARLAI 168 >gi|210612464|ref|ZP_03289322.1| hypothetical protein CLONEX_01523 [Clostridium nexile DSM 1787] gi|210151572|gb|EEA82579.1| hypothetical protein CLONEX_01523 [Clostridium nexile DSM 1787] Length = 169 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 72/142 (50%), Gaps = 2/142 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++ P++E F V + ++E N L+ ++++ G +++ DCE +S+A S IL Sbjct: 22 EQKTEELLLPIVESNGFELVDVEYVKEGGNWYLRAYIDKP-GGISVDDCEVVSRAFSDIL 80 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D ++ IE Y EVSSPG+ RP+ ++ DF R G V + +++ IG + + Sbjct: 81 DEKDYIEDTYIFEVSSPGLGRPLKKEKDFARSIGEEVEIRTYRAIDRQKEFIGILKEYDQ 140 Query: 141 TGFFLEKEKRGEKDMNELQIAI 162 +E E K +IA+ Sbjct: 141 DTVTIEYEDETTKTFERSEIAL 162 >gi|296132884|ref|YP_003640131.1| protein of unknown function DUF150 [Thermincola sp. JR] gi|296031462|gb|ADG82230.1| protein of unknown function DUF150 [Thermincola potens JR] Length = 153 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 78/158 (49%), Gaps = 10/158 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQ 74 + ++ + P++E V + ++E + L++F+++ G ++L DC+ ++Q Sbjct: 1 MAKSKIEDLVTELAVPIVENAGMELVDVEYVKEGAHWYLRVFIDKPQG-VSLDDCQMIAQ 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 + P+LD ++ I Y LEVSSPG+DRP+ + +DF R+ G V K++ IG+ Sbjct: 60 RLDPLLDEKDPIPHEYMLEVSSPGLDRPLKKPADFARYAGRKVKVSTYAPIDGKKEFIGE 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + G + + + A+ D + S RL Sbjct: 120 LKGLIDNEVVI--------GICGTDKALPLDKVSSVRL 149 >gi|167035705|ref|YP_001670936.1| hypothetical protein PputGB1_4714 [Pseudomonas putida GB-1] gi|189040210|sp|B0KHY0|RIMP_PSEPG RecName: Full=Ribosome maturation factor rimP gi|166862193|gb|ABZ00601.1| protein of unknown function DUF150 [Pseudomonas putida GB-1] Length = 152 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 40/154 (25%), Positives = 79/154 (51%), Gaps = 10/154 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++ PV+E + ++ I + + K+ +L+I+++++ G + + DCE +S+ S ILD Sbjct: 6 EQLQALLAPVVEGLGYQCWGIEYVSQGKHSVLRIYIDKE-GGILVEDCEAVSRQASAILD 64 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I Y LEVSSPG+DRP+ F G V ++ ++ G + G Sbjct: 65 VEDPISSEYTLEVSSPGMDRPLFTLEQFASHAGEQVKIKLRSPFEGRRNFQGLLRGV--- 121 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +E+ ++ + + DS+ A +I + Sbjct: 122 -----EEQDVVVQVDNQEFLLPIDSIDKANIIPS 150 >gi|255066626|ref|ZP_05318481.1| hypothetical protein NEISICOT_01636 [Neisseria sicca ATCC 29256] gi|255049210|gb|EET44674.1| hypothetical protein NEISICOT_01636 [Neisseria sicca ATCC 29256] Length = 189 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 78/159 (49%), Gaps = 13/159 (8%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELS 73 +F G DI ++++ + + + V L + L++F++++ G +T+ DC +S Sbjct: 38 FLFMYSGRFMDIQTILEKTLPGLGYELVDFELTAQG--TLRVFIDKE-GGITVEDCATVS 94 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 +S + VE+I + LE+SSPG+DRP+ + +DF+R+ G + L ++ IG Sbjct: 95 NHLSRVFMVEDI--DYKNLEISSPGLDRPLKKAADFVRFAGQQAKIKTRLPVDGQKNFIG 152 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +I G L + + I D++ ARL Sbjct: 153 RIEGCENDTVTLSFDGK--------TAQIGLDNIDKARL 183 >gi|331016646|gb|EGH96702.1| ribosome maturation protein RimP [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 158 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 74/154 (48%), Gaps = 10/154 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + ++ PV+ + ++ I + K+ +L+I+++++ G + + DC +S+ IS +LD Sbjct: 12 EQLQGLLAPVVVALGYQCWGIDFSSQGKHSVLRIYIDKE-GGVLVDDCAIVSRQISGVLD 70 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I Y LEVSSPG++RP+ F + G V ++ ++ G + G E Sbjct: 71 VEDPISTEYTLEVSSPGMERPLFTIEQFALYAGEQVRIKLRSPFEGRRNFQGLLRGVEEQ 130 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + E + + D + A +I T Sbjct: 131 DVVVHVEDH--------EFLLPIDLIDKANIIPT 156 >gi|149375757|ref|ZP_01893525.1| hypothetical protein MDG893_04092 [Marinobacter algicola DG893] gi|149359882|gb|EDM48338.1| hypothetical protein MDG893_04092 [Marinobacter algicola DG893] Length = 153 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 80/152 (52%), Gaps = 9/152 (5%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++P++E + + I + + LL+IF++ + + + DCE++S+ S ++D Sbjct: 6 KQLEELLRPIVEGLGYEFWGIEFRSQGHHSLLRIFIDDAENGIGIEDCEKVSRQASGVMD 65 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I+ Y LEVSSPG+DRP+ R + + GH V ++ ++ ++K G I G Sbjct: 66 VEDPIQTEYTLEVSSPGMDRPLFRLEQYEAFAGHQVQIKLRMAFEGRRKFQGLIKGIEG- 124 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 +++ + + FDS+ A ++ Sbjct: 125 -------DDVVVVVDDHEYLLPFDSIEKANIV 149 >gi|147677600|ref|YP_001211815.1| hypothetical protein PTH_1265 [Pelotomaculum thermopropionicum SI] gi|259586176|sp|A5D2U8|RIMP_PELTS RecName: Full=Ribosome maturation factor rimP gi|146273697|dbj|BAF59446.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 153 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 80/157 (50%), Gaps = 14/157 (8%) Query: 23 GDISSVIQ----PVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 + +++ PV++E V + +E L+IF+++ G + + DC+ +S+ I Sbjct: 4 EKVLELVKRVTLPVVQEAGLELVDVEYAKEGGRYYLRIFIDKP-GGVRIEDCQHVSEKID 62 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LD + I Y LEVSSPGIDRP+ + D++R+ G + + ++K G+I+G Sbjct: 63 RLLDELDPIPQSYFLEVSSPGIDRPLKKAGDYIRFAGRLARVKTFSPVEGRRKFTGRIVG 122 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ E + +++I F + SARL V Sbjct: 123 MHGEDVVMQVEGK--------EMSIPFKQIASARLEV 151 >gi|46907547|ref|YP_013936.1| hypothetical protein LMOf2365_1338 [Listeria monocytogenes serotype 4b str. F2365] gi|47093945|ref|ZP_00231682.1| conserved hypothetical protein [Listeria monocytogenes str. 4b H7858] gi|226223922|ref|YP_002758029.1| hypothetical protein Lm4b_01329 [Listeria monocytogenes Clip81459] gi|254824620|ref|ZP_05229621.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|254852629|ref|ZP_05241977.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|254932364|ref|ZP_05265723.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|254993852|ref|ZP_05276042.1| hypothetical protein LmonocytoFSL_13365 [Listeria monocytogenes FSL J2-064] gi|255521786|ref|ZP_05389023.1| hypothetical protein LmonocFSL_11262 [Listeria monocytogenes FSL J1-175] gi|300765439|ref|ZP_07075421.1| hypothetical protein LMHG_11499 [Listeria monocytogenes FSL N1-017] gi|51316675|sp|Q720A1|RIMP_LISMF RecName: Full=Ribosome maturation factor rimP gi|259585784|sp|C1L2M7|RIMP_LISMC RecName: Full=Ribosome maturation factor rimP gi|46880815|gb|AAT04113.1| conserved hypothetical protein [Listeria monocytogenes serotype 4b str. F2365] gi|47017683|gb|EAL08479.1| conserved hypothetical protein [Listeria monocytogenes str. 4b H7858] gi|225876384|emb|CAS05093.1| unnamed protein product [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605944|gb|EEW18552.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|293583920|gb|EFF95952.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|293593858|gb|EFG01619.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|300513876|gb|EFK40941.1| hypothetical protein LMHG_11499 [Listeria monocytogenes FSL N1-017] gi|328468604|gb|EGF39604.1| ribosome maturation protein RimP [Listeria monocytogenes 1816] gi|328475043|gb|EGF45831.1| ribosome maturation protein RimP [Listeria monocytogenes 220] gi|332311764|gb|EGJ24859.1| Ribosome maturation factor rimP [Listeria monocytogenes str. Scott A] Length = 155 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 73/155 (47%), Gaps = 6/155 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + +++ P+ +E+ V I+ +E N L+IF+++ DG + + +C +S+ +S Sbjct: 4 VLEQVEAIVTPITDELQLELVDIAFEKEGPNWFLRIFIDK-DGGVDIDECAAVSEKVSEK 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +D + I +Y LEVSSPG +RP+ ++ DF V ++ G ++ Sbjct: 63 MDENDPITQNYFLEVSSPGAERPLKKEQDFENAVSKYVHVTSYEPIDGRKMWEGTLVSYD 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 T + + K + I D + ARL + Sbjct: 123 GTTLVITITDKTRK----ITCEIPKDKVAKARLAI 153 >gi|116872752|ref|YP_849533.1| hypothetical protein lwe1336 [Listeria welshimeri serovar 6b str. SLCC5334] gi|123460990|sp|A0AIC2|RIMP_LISW6 RecName: Full=Ribosome maturation factor rimP gi|116741630|emb|CAK20754.1| conserved hypothetical protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 155 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 73/155 (47%), Gaps = 6/155 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + ++++P+ E+ V I+ +E N L+IF+++ DG + + +C +S+ +S Sbjct: 4 VLEQVEAIVEPITNELQLELVDIAFEKEGPNWFLRIFIDK-DGGVDIDECAAVSEKVSEK 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +D + I +Y LEVSSPG +RP+ ++ DF V ++ G ++ Sbjct: 63 MDESDPITQNYFLEVSSPGAERPLKKEQDFENAVSKYVHVTSYEPIDGRKMWEGTLVSYD 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 T + + K + I D + ARL + Sbjct: 123 GTTLVITITDKTRK----ITCEIPKDKVAKARLAI 153 >gi|311030089|ref|ZP_07708179.1| hypothetical protein Bm3-1_06021 [Bacillus sp. m3-13] Length = 156 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 75/156 (48%), Gaps = 6/156 (3%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISP 78 + + + P+++EM+ V I ++E + L++FV+++ G + + DC +S+ +S Sbjct: 4 NVTETVEELALPIVKEMNVELVDIEYVKEGSSWFLRVFVDKE-GGIDIEDCGTVSEKLSE 62 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LD + I +Y LEVSSPG +RP+ +K D + G V + + G ++ Sbjct: 63 KLDELDPIPHNYFLEVSSPGAERPLKKKEDIEKSVGKYVNIKTYEPIDGLKSFEGDLLDF 122 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L + K +++I + + ARL V Sbjct: 123 DGETIKLSMTIKTRKK----EVSIPYPKVAKARLAV 154 >gi|312963085|ref|ZP_07777570.1| hypothetical protein PFWH6_5007 [Pseudomonas fluorescens WH6] gi|311282596|gb|EFQ61192.1| hypothetical protein PFWH6_5007 [Pseudomonas fluorescens WH6] Length = 173 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 78/154 (50%), Gaps = 10/154 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 ++ +++ PV+ + + I + ++ +L+++++++ G + + DC +S+ IS +LD Sbjct: 27 EELQALLAPVVVALGYECWGIEFSAQGRHSMLRVYIDKE-GGVLVDDCAIVSRQISGVLD 85 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I Y LEVSSPG++RP+ F ++ G V ++ ++ G + G Sbjct: 86 VEDPISVEYTLEVSSPGMERPLFTIEQFAKFAGEQVKIKLRSPFEGRRNFQGLLRGV--- 142 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +E+ + + + + D + A +I + Sbjct: 143 -----EEQDVVVQVEDHEFLLPIDMIDKANIIPS 171 >gi|119774096|ref|YP_926836.1| hypothetical protein Sama_0959 [Shewanella amazonensis SB2B] gi|166919003|sp|A1S460|RIMP_SHEAM RecName: Full=Ribosome maturation factor rimP gi|119766596|gb|ABL99166.1| protein of unknown function DUF150 [Shewanella amazonensis SB2B] Length = 151 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 78/154 (50%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ ++ P +E + I ++ K+ +L+++++ + G +++ DC + S+ IS I Sbjct: 4 LETRLAEMLTPAVEAAGYVVWGIEYVQAGKHSILRVYIDSEQG-ISVDDCADASRQISAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ + + R+ G V ++ + + L G I Sbjct: 63 LDVEDPISNEYTLEVSSPGLDRPLFNAAQYARYVGEDVKVQLTMPVEGSRNLKGVIDKVE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 ++ + + + ++ D++ +I Sbjct: 123 GQMLTIKVDGK--------TLVVALDNIRKGNII 148 >gi|16803361|ref|NP_464846.1| hypothetical protein lmo1321 [Listeria monocytogenes EGD-e] gi|224499903|ref|ZP_03668252.1| hypothetical protein LmonF1_09559 [Listeria monocytogenes Finland 1988] gi|224501736|ref|ZP_03670043.1| hypothetical protein LmonFR_04337 [Listeria monocytogenes FSL R2-561] gi|254828681|ref|ZP_05233368.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|254829922|ref|ZP_05234577.1| hypothetical protein Lmon1_01135 [Listeria monocytogenes 10403S] gi|254898514|ref|ZP_05258438.1| hypothetical protein LmonJ_01825 [Listeria monocytogenes J0161] gi|254911995|ref|ZP_05262007.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254936322|ref|ZP_05268019.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|284801706|ref|YP_003413571.1| hypothetical protein LM5578_1460 [Listeria monocytogenes 08-5578] gi|284994848|ref|YP_003416616.1| hypothetical protein LM5923_1413 [Listeria monocytogenes 08-5923] gi|315282174|ref|ZP_07870639.1| conserved hypothetical protein [Listeria marthii FSL S4-120] gi|34222940|sp|Q8Y7G0|RIMP_LISMO RecName: Full=Ribosome maturation factor rimP gi|16410737|emb|CAC99399.1| lmo1321 [Listeria monocytogenes EGD-e] gi|258601085|gb|EEW14410.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|258608912|gb|EEW21520.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|284057268|gb|ADB68209.1| hypothetical protein LM5578_1460 [Listeria monocytogenes 08-5578] gi|284060315|gb|ADB71254.1| hypothetical protein LM5923_1413 [Listeria monocytogenes 08-5923] gi|293589959|gb|EFF98293.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|313614178|gb|EFR87857.1| conserved hypothetical protein [Listeria marthii FSL S4-120] Length = 155 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 73/155 (47%), Gaps = 6/155 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + +++ P+ +E+ V I+ +E N L+IF+++ DG + + +C +S+ +S Sbjct: 4 VLEQVEAIVAPITDELQLELVDIAFEKEGPNWFLRIFIDK-DGGVDIDECAAVSEKVSEK 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +D + I +Y LEVSSPG +RP+ ++ DF V ++ G ++ Sbjct: 63 MDENDPITQNYFLEVSSPGAERPLKKEQDFENAVSKYVHVTSYEPIDGRKMWEGTLVSYD 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 T + + K + I D + ARL + Sbjct: 123 GTTLVITITDKTRK----ITCEIPKDKVAKARLAI 153 >gi|217964532|ref|YP_002350210.1| hypothetical protein LMHCC_1249 [Listeria monocytogenes HCC23] gi|290893568|ref|ZP_06556551.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|254800006|sp|B8DG06|RIMP_LISMH RecName: Full=Ribosome maturation factor rimP gi|217333802|gb|ACK39596.1| conserved hypothetical protein [Listeria monocytogenes HCC23] gi|290556913|gb|EFD90444.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|307570902|emb|CAR84081.1| conserved hypothetical protein [Listeria monocytogenes L99] gi|313608988|gb|EFR84730.1| conserved hypothetical protein [Listeria monocytogenes FSL F2-208] Length = 155 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 6/155 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + +++ P+ +E+ V I +E N L+IF+++ DG + + +C +S+ +S Sbjct: 4 VLEQVEAIVAPITDELQLELVDIVFEKEGPNWFLRIFIDK-DGGVDIDECAAVSEKVSEK 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +D + I +Y LEVSSPG +RP+ ++ DF V ++ G ++ Sbjct: 63 MDENDPITQNYFLEVSSPGAERPLKKEQDFENAVSKYVHVTSYEPIDGRKMWEGTLVSYD 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 T + + K + I D + ARL + Sbjct: 123 GTTLVITITDKTRK----ITCEIPKDKVAKARLAI 153 >gi|148259242|ref|YP_001233369.1| hypothetical protein Acry_0222 [Acidiphilium cryptum JF-5] gi|259585658|sp|A5FV18|RIMP_ACICJ RecName: Full=Ribosome maturation factor rimP gi|146400923|gb|ABQ29450.1| protein of unknown function DUF150 [Acidiphilium cryptum JF-5] Length = 201 Score = 171 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 96/166 (57%), Gaps = 9/166 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDG-NMTLRDCEELSQAIS 77 GL G I+ +I P +E + + V+++++ ++ +QI +R D ++L DCE +S +S Sbjct: 36 TGLEGRIAELIAPGLESIGYELVRVAIMGKQTPTVQIMADRADQTPLSLDDCERISHLVS 95 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS-SGDKQKLIGKIM 136 +LDV++ I + LEVSS GIDRP+ R D+ R+ GH+ ++ + + +++L G ++ Sbjct: 96 AVLDVDDPISSAWTLEVSSAGIDRPLTRVKDWNRYAGHLARIDLDVPTASGRKRLTGTVL 155 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS 182 G E ++ + + + + + A+L++T+EL++A+ Sbjct: 156 GADEAQARVKLD-------SGETVDLPHAHIRRAKLVLTEELIKAT 194 >gi|320354997|ref|YP_004196336.1| hypothetical protein Despr_2912 [Desulfobulbus propionicus DSM 2032] gi|320123499|gb|ADW19045.1| protein of unknown function DUF150 [Desulfobulbus propionicus DSM 2032] Length = 153 Score = 171 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 85/155 (54%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L I +P++ +M V++ E +L+ F++++ G +T+ DC ++S+ IS Sbjct: 8 LLTTIQGFAEPLLADMGMELVEVQFRREGHGWVLRFFIDKE-GGITIDDCADVSREISAY 66 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 L+VE++I+ Y LEVSSPG++RP+ +K DF R+ ++ ++ G+++ L G ++G Sbjct: 67 LEVEDLIDHAYHLEVSSPGLERPLRKKEDFHRFIDRLIRVKLREPLGEQKVLTGTLLGME 126 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L ++ + I ++++ ARL + Sbjct: 127 GDTVLL--------ALDSETVRIDWENISKARLTL 153 >gi|258591346|emb|CBE67645.1| conserved protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 153 Score = 171 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 46/153 (30%), Positives = 85/153 (55%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + ++ P+ E+ V + E +L++++++ DG +TL DC+ +S+ +S + Sbjct: 5 VVERVRAIALPLFTELGLELVDVEFRREAGGWILRLYLDKPDG-VTLDDCQRVSEELSDL 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVENII Y LEVSSPG++RP++R+SDFLR+ G + + +++ +G + G Sbjct: 64 LDVENIIHHPYTLEVSSPGLNRPLLRESDFLRFAGQRARVTTLQAVAGQRRFLGVLRGCE 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + LE+E + I + ++ ARL Sbjct: 124 DGQVLLERED-------GTTVLIPYAAISKARL 149 >gi|73662812|ref|YP_301593.1| hypothetical protein SSP1503 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|82582354|sp|Q49X50|RIMP_STAS1 RecName: Full=Ribosome maturation factor rimP gi|72495327|dbj|BAE18648.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 155 Score = 171 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 82/155 (52%), Gaps = 6/155 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + ++IQPV+ +++F V++ +E K+ L++ ++++ G + L DC S+ IS + Sbjct: 4 ITEQVETIIQPVLNDLNFELVEVEFTKEGKDHFLRVSIDKE-GGVDLNDCALASEKISEV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +D E+ I+ Y L+V+SPG +RP+ ++ DF V + ++ +G + Sbjct: 63 MDAEDPIQEMYYLDVASPGAERPIKKEKDFQNAITKPVFVSLYAPIEGSKEWLGILQSVD 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ET +E +++ + QI I + + AR V Sbjct: 123 ETNIVMEVKEKAKTK----QIEIPRNKIAKARHAV 153 >gi|56963997|ref|YP_175728.1| hypothetical protein ABC2232 [Bacillus clausii KSM-K16] gi|81365999|sp|Q5WFT8|RIMP_BACSK RecName: Full=Ribosome maturation factor rimP gi|56910240|dbj|BAD64767.1| conserved hypothetical protein [Bacillus clausii KSM-K16] Length = 156 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 77/154 (50%), Gaps = 6/154 (3%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISP 78 ++ + + +P++ E+ V++ +E N L++F++ D G + L DCE +S+ +S Sbjct: 4 NVSRTVEQLAEPIVRELHLELVEVEYKKEGPNWYLRVFIDADRG-VNLDDCEAVSEKLSE 62 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LD + I+ Y LEVSSPG +RP+ +++D + G V ++ G ++ Sbjct: 63 VLDEVDPIKEAYFLEVSSPGAERPLKKEADVKKAVGKGVYVTTYEPIDGQKAFEGVLVSF 122 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + +E G+ + + + + +ARL Sbjct: 123 EDATLVIE----GKNKTRTVTYTVPYAKVANARL 152 >gi|310641592|ref|YP_003946350.1| ribosome maturation factor rimp [Paenibacillus polymyxa SC2] gi|309246542|gb|ADO56109.1| Ribosome maturation factor rimP [Paenibacillus polymyxa SC2] Length = 153 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 37/151 (24%), Positives = 71/151 (47%), Gaps = 10/151 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + + QP ++E F V + ++E N L++FV++ DG + L DC +S+ + LD Sbjct: 10 VEEMAQPYLDEHGFELVDVEYVKEGSNWFLRVFVDK-DGGIDLDDCSMISEYLGQKLDEN 68 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + + Y LEVSSPG +RP+ + D + G V ++ G+++ + Sbjct: 69 DPVSTAYFLEVSSPGAERPLKKAEDVTKAVGKNVFVTTYEPINGLKEFEGRLLSFEDGEL 128 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ ++ I +D + ARL + Sbjct: 129 TVQSGQKKH--------TIPYDKVAGARLAI 151 >gi|258545584|ref|ZP_05705818.1| BCR/YhbC family protein [Cardiobacterium hominis ATCC 15826] gi|258519284|gb|EEV88143.1| BCR/YhbC family protein [Cardiobacterium hominis ATCC 15826] Length = 157 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 47/156 (30%), Positives = 85/156 (54%), Gaps = 3/156 (1%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 M ++ +++PV+E M F V + N +L+I+V+R +G + + E+++A++ Sbjct: 1 MSREERVTELLKPVVESMGFEWVGVEYHHNSVNAILRIYVDRPEGGIDMEGVVEVTEAVN 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 PILDVE+ I Y LEVSSPG+DRP+ +DF+R+ G + G +++ G I Sbjct: 61 PILDVEDPINAPYTLEVSSPGLDRPLFSFADFVRFTGETAKVHLHAPVGKRRRFEGVIES 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 T ET + R + + + + + ++ ARL+ Sbjct: 121 TDETAQRITFAVRQGRAVEA--VEVDYANVDKARLV 154 >gi|251792721|ref|YP_003007447.1| hypothetical protein NT05HA_0985 [Aggregatibacter aphrophilus NJ8700] gi|247534114|gb|ACS97360.1| protein YhbC [Aggregatibacter aphrophilus NJ8700] Length = 151 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 76/154 (49%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 L + ++Q +E++ I +++F++++ G +T+ DC +S+ +S + Sbjct: 4 LEQKLQELVQGSVEDLGCELWGIECQRVGRYLTVRLFIDKE-GGVTVEDCAYVSRQVSAV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ + F R+ G + + + D++K G++ Sbjct: 63 LDVEDPIADKYNLEVSSPGLDRPLFTLNQFERYLGQEILLHLRIPVADRRKWQGQLAKIE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + + + ++F ++ A +I Sbjct: 123 NDMITLIVDGK--------EQVLAFGNIQKANVI 148 >gi|294011602|ref|YP_003545062.1| hypothetical protein SJA_C1-16160 [Sphingobium japonicum UT26S] gi|292674932|dbj|BAI96450.1| conserved hypothetical protein [Sphingobium japonicum UT26S] Length = 196 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 9/174 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDD-GNMTLRDCEELSQAI 76 M +++++I+P ++ + F V+I L + LQI ER + + + DC +S+ + Sbjct: 23 MADIAELTALIEPEVKALGFDLVRIKLFGSGDEYTLQIMAERPETKQLVIEDCAAISRRL 82 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 S +LD + IE YRLEVSSPGIDRP+ R +DFL W GH + ++ G + Sbjct: 83 SDVLDEADPIEEAYRLEVSSPGIDRPLTRLTDFLEWAGHEAKIAATETVSGRKSFRGVLK 142 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 G K G +AI F + A+LI+TD L+ AS+ A Sbjct: 143 GVEGEDILFADAKAG-------DVAIPFALVGDAKLILTDALIAASMPLSSDGA 189 >gi|259585706|sp|Q0VSS3|RIMP_ALCBS RecName: Full=Ribosome maturation factor rimP Length = 151 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 38/151 (25%), Positives = 79/151 (52%), Gaps = 9/151 (5%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 ++ ++ PV+E++ F + ++ + +L++F++ DG +++ DC +S +S +LD Sbjct: 5 TEQLTELLAPVVEDLGFVLWGVEYIQGRGAVLRVFIDHADG-ISVDDCAAVSHEVSGVLD 63 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I G + LEVSSPG+DRPM + ++ + G V +++ K+K+ I+ Sbjct: 64 VEDPIPGEFNLEVSSPGMDRPMFDITQYVDYIGEDVQLKLLAPVSGKRKMTAAIVAVDGD 123 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +E + + + + + ARL Sbjct: 124 TLVVELDGE--------TLRVPYSQVDRARL 146 >gi|77457004|ref|YP_346509.1| hypothetical protein Pfl01_0777 [Pseudomonas fluorescens Pf0-1] gi|77381007|gb|ABA72520.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1] Length = 173 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 77/154 (50%), Gaps = 10/154 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 ++ +++ PV+ + + I + ++ +L+++++++ G + + DC +S+ IS +LD Sbjct: 27 EELQALLAPVVVALGYECWGIEFSAQGRHSMLRVYIDKE-GGVLVDDCAIVSRQISGVLD 85 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I Y LEVSSPG++RP+ F ++ G V ++ ++ G + G Sbjct: 86 VEDPISVEYTLEVSSPGMERPLFTLEQFAKYVGEQVKIKLRSPFEGRRNFQGLLRGV--- 142 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +E+ + + + D + A +I + Sbjct: 143 -----EEQDVVVQVENHEFLLPIDMIDKANIIPS 171 >gi|220934177|ref|YP_002513076.1| protein of unknown function DUF150 [Thioalkalivibrio sp. HL-EbGR7] gi|259645128|sp|B8GP00|RIMP_THISH RecName: Full=Ribosome maturation factor rimP gi|219995487|gb|ACL72089.1| protein of unknown function DUF150 [Thioalkalivibrio sp. HL-EbGR7] Length = 154 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 39/150 (26%), Positives = 78/150 (52%), Gaps = 10/150 (6%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDV 82 + ++++P++ M ++ + K+ LL++F++ + G +TL DC E+S+ +S ++DV Sbjct: 2 QLKALLEPLVTRMGYQLWGMEFRVAKHSALLRLFIDSEQG-ITLDDCTEVSRQVSALMDV 60 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ I+ Y LEVSSPG+DRP+ + R+ G V ++ G I+ E Sbjct: 61 EDPIQVPYTLEVSSPGVDRPLFEAGQYARYVGEQVRVRTQWPIDGQRNFAGAIVSADEDS 120 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARL 172 L+ + R ++ + +++ RL Sbjct: 121 VTLDVDGR--------EVRLPLEAIARGRL 142 >gi|194467744|ref|ZP_03073730.1| protein of unknown function DUF150 [Lactobacillus reuteri 100-23] gi|194452597|gb|EDX41495.1| protein of unknown function DUF150 [Lactobacillus reuteri 100-23] Length = 157 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 76/158 (48%), Gaps = 8/158 (5%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + ++ ++ P++++ F + ++E K+ L++++++ DG +TL DC +S +S Sbjct: 3 SVVETVTDLVTPILQDHDFYLYDLEFVKEGKSWYLRVYIDK-DGGITLEDCALVSDELSE 61 Query: 79 ILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 LD + I Y LEVSSPG +RP+ ++ D+ R H + + ++ G + Sbjct: 62 ALDNVEPDPIPQAYFLEVSSPGAERPLKKEEDYQRAIDHYIHISLYQQINGQKIYEGTLT 121 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 S+ L+ + QI I + ARL + Sbjct: 122 QLSDKEITLDYLDKTRHR----QITIDRQKIAQARLAI 155 >gi|292492784|ref|YP_003528223.1| hypothetical protein Nhal_2769 [Nitrosococcus halophilus Nc4] gi|291581379|gb|ADE15836.1| protein of unknown function DUF150 [Nitrosococcus halophilus Nc4] Length = 150 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 76/153 (49%), Gaps = 10/153 (6%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 IS +++PV+ + + V + L K +LL+I+++ G +T+ DCE +S +S +L Sbjct: 4 DERISKLVEPVVTALGYELVGVERLSIGKGVLLRIYIDTPLG-VTVDDCERVSHQVSALL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE + Y LE+SSPG+DRP+ + F R+ G V+ + +++ G + G Sbjct: 63 DVEEPMASPYTLEISSPGLDRPLFTEEHFKRFAGAEVSITLSEPLNGRRRFKGLLRGMRG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E + + + + ARLI Sbjct: 123 NCVVILAEGE--------EFELPLEGIRKARLI 147 >gi|299823035|ref|ZP_07054921.1| protein of hypothetical function DUF150 [Listeria grayi DSM 20601] gi|299816564|gb|EFI83802.1| protein of hypothetical function DUF150 [Listeria grayi DSM 20601] Length = 155 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 73/155 (47%), Gaps = 6/155 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + +++ P+ EE+ V I+ +E KN L++FV+R G + + +C +S+ +S Sbjct: 4 VTDQVEAIVLPITEELGVELVDIAYEKEGKNWFLRVFVDRP-GGIDIDECAAVSEKLSEK 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +D ++ I +Y LEVSSPG +RP+ ++ DF G V ++ G + Sbjct: 63 MDEQDPISENYFLEVSSPGAERPLKKEKDFENAVGKYVHVTSYEPIDSRKMWEGTLEAYD 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + L + + + ARL + Sbjct: 123 GEYLTITVKDKTRT----LTCKVPKEKVAKARLAI 153 >gi|120556257|ref|YP_960608.1| hypothetical protein Maqu_3350 [Marinobacter aquaeolei VT8] gi|166990772|sp|A1U602|RIMP_MARAV RecName: Full=Ribosome maturation factor rimP gi|120326106|gb|ABM20421.1| protein of unknown function DUF150 [Marinobacter aquaeolei VT8] Length = 153 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 80/152 (52%), Gaps = 9/152 (5%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++PV+E + + I + L++F++ + + + DCE++S+ +S ++D Sbjct: 6 KQLEDILRPVVEGLGYEFWGIEFRSHGHHSKLRVFIDDAENGIAIDDCEKVSRQVSGVMD 65 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I+ Y LEVSSPG+DRP+ R + + GH V ++ ++ ++K +G I G Sbjct: 66 VEDPIQTEYTLEVSSPGMDRPLFRLEQYEAFIGHKVQIKLRMAFEGRRKFLGLIKGVEG- 124 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 +++ + + FDS+ A ++ Sbjct: 125 -------DDVVVVVDDHEYLLPFDSIEKANIV 149 >gi|83644099|ref|YP_432534.1| hypothetical protein HCH_01237 [Hahella chejuensis KCTC 2396] gi|83632142|gb|ABC28109.1| uncharacterized protein conserved in bacteria [Hahella chejuensis KCTC 2396] Length = 173 Score = 171 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 83/162 (51%), Gaps = 12/162 (7%) Query: 15 IFGDMGLA--GDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEE 71 + GD LA D+ +++PV+E M + + + K LL+I+++++ G + + DCE+ Sbjct: 18 LIGDNLLARKDDLYQLLKPVVEGMGCDFWGMDYIAQGKRSLLRIYIDKESG-VLVDDCEK 76 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+ IS ILDVE+ I+G Y LEVSSPG DRP+ + + G ++ + ++K Sbjct: 77 VSRQISAILDVEDPIKGEYTLEVSSPGWDRPLFNVEQYKAYIGSIIEVRLQAPFNGRRKF 136 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 G + L+ ++ + +++ A ++ Sbjct: 137 KGLLAAVENDEIVLQ--------VDAEEFIFPVETIDKANVV 170 >gi|88797621|ref|ZP_01113210.1| hypothetical protein MED297_10726 [Reinekea sp. MED297] gi|88779793|gb|EAR10979.1| hypothetical protein MED297_10726 [Reinekea sp. MED297] Length = 155 Score = 171 bits (433), Expect = 6e-41, Method: Composition-based stats. Identities = 39/160 (24%), Positives = 83/160 (51%), Gaps = 10/160 (6%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELS 73 + G + +++ +I+PV+ M F + + N L+I+++ +DG + + C ++S Sbjct: 1 MVGVLAKIDELTDLIEPVVIGMGFLLWGVEYIPSGNYSTLRIYIDHEDG-IQVDQCADVS 59 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 + +S +LDVE+ I +Y LEVSSPG+DRP+ + + G V ++ + ++K G Sbjct: 60 RQVSAVLDVEDPISSNYTLEVSSPGMDRPLFTLEQYAAYIGEWVDIKLRYAFEGRRKFKG 119 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 ++G + ++ +K + + +S+ R+I Sbjct: 120 VLVGIEDGDVIVQVDKE--------EFLLPIESIDRGRII 151 >gi|116333945|ref|YP_795472.1| hypothetical protein LVIS_1339 [Lactobacillus brevis ATCC 367] gi|122269371|sp|Q03QT1|RIMP_LACBA RecName: Full=Ribosome maturation factor rimP gi|116099292|gb|ABJ64441.1| hypothetical protein LVIS_1339 [Lactobacillus brevis ATCC 367] Length = 157 Score = 171 bits (433), Expect = 6e-41, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 78/157 (49%), Gaps = 8/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + ++++ QP++ + F V + ++E K+ L++++++ G + + +C +S +S Sbjct: 4 VVETVTALAQPIVAQHQFELVDVEFVKEGKSWYLRLYIDKP-GGINIEECALVSDEVSEK 62 Query: 80 LDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +D + I Y LEVSSPG +RP+ + +DF + G + + G+ + G ++ Sbjct: 63 MDALDPDPIPQAYFLEVSSPGAERPLKKPADFEKAVGDYIHVSLYQKIGNSKVYEGTLLS 122 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + LE +G + I D++ ARL + Sbjct: 123 LTADSLDLEVNLKGRIK----TLTIPRDAVAQARLAI 155 >gi|125973510|ref|YP_001037420.1| hypothetical protein Cthe_0995 [Clostridium thermocellum ATCC 27405] gi|256003328|ref|ZP_05428319.1| protein of unknown function DUF150 [Clostridium thermocellum DSM 2360] gi|281417713|ref|ZP_06248733.1| protein of unknown function DUF150 [Clostridium thermocellum JW20] gi|259585742|sp|A3DE48|RIMP_CLOTH RecName: Full=Ribosome maturation factor rimP gi|125713735|gb|ABN52227.1| protein of unknown function DUF150 [Clostridium thermocellum ATCC 27405] gi|255992618|gb|EEU02709.1| protein of unknown function DUF150 [Clostridium thermocellum DSM 2360] gi|281409115|gb|EFB39373.1| protein of unknown function DUF150 [Clostridium thermocellum JW20] gi|316940251|gb|ADU74285.1| protein of unknown function DUF150 [Clostridium thermocellum DSM 1313] Length = 154 Score = 171 bits (433), Expect = 6e-41, Method: Composition-based stats. Identities = 42/154 (27%), Positives = 83/154 (53%), Gaps = 2/154 (1%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQ 74 + ++ + PV+ + SF V + ++E + L+I++++ G +T+ DC+ +S+ Sbjct: 1 MTRKEIEEIVTEIANPVVNKHSFELVDVEFIKEGSSWYLRIYIDKP-GGITIDDCQVVSE 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 IS ILD E+ I Y LEVSSPG+DRP+ ++SDF R+ G +V ++ K+ G+ Sbjct: 60 EISDILDKEDPIPHSYFLEVSSPGLDRPLKKESDFERFKGELVEVKVFKPIEGKKIFEGE 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLL 168 ++G + ++K + ++A+ + Sbjct: 120 LVGYKDNKIIIKKNGNELMEFERDKVALVRRVIK 153 >gi|229592638|ref|YP_002874757.1| hypothetical protein PFLU5255 [Pseudomonas fluorescens SBW25] gi|229364504|emb|CAY52354.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25] Length = 173 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 78/154 (50%), Gaps = 10/154 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 ++ +++ PV+ + + I + ++ +L+++++++ G + + DC +S+ IS +LD Sbjct: 27 EELQALLAPVVVALGYECWGIEFSAQGRHSMLRVYIDKE-GGVLVDDCAIVSRQISGVLD 85 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I Y LEVSSPG++RP+ F ++ G V ++ ++ G + G Sbjct: 86 VEDPISVEYTLEVSSPGMERPLFTIDQFAKFAGEQVKIKLRSPFEGRRNFQGLLRGV--- 142 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +E+ + + + + D + A +I + Sbjct: 143 -----EEQDVVVQVEDHEFLLPIDMIDKANIIPS 171 >gi|254427945|ref|ZP_05041652.1| conserved hypothetical protein [Alcanivorax sp. DG881] gi|196194114|gb|EDX89073.1| conserved hypothetical protein [Alcanivorax sp. DG881] Length = 151 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 38/151 (25%), Positives = 79/151 (52%), Gaps = 9/151 (5%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 ++ ++ PV+E++ F + ++ + +L++F++ DG +++ +C +S +S +LD Sbjct: 5 TEQLTELLAPVVEDLGFVLWGVEYIQGRGAVLRVFIDHADG-ISVDNCAAVSHEVSGVLD 63 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I G Y LEVSSPG+DRPM + ++ + G V +++ K+K+ I+ Sbjct: 64 VEDPISGEYNLEVSSPGMDRPMFEIAQYVDYIGEDVQLKLLAPVSGKRKMTAAIVAVDGD 123 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +E + + + + + ARL Sbjct: 124 TLVVELDGE--------TLRVPYSQVDRARL 146 >gi|259503124|ref|ZP_05746026.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] gi|259168990|gb|EEW53485.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] Length = 171 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 8/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + ++ ++ P+++E F I ++E K+ L++++++ DG +TL DC +S +S Sbjct: 18 VTEVVTDLVTPILDEHHFYLYDIEFVKEGKSWYLRVYIDK-DGGITLNDCAAVSDQLSEA 76 Query: 80 LD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + I Y LEVSSPG +RP+ + D+ R H + + K+ G ++ Sbjct: 77 LDNVEPDPIPQAYFLEVSSPGAERPLKNEDDYQRAVNHYIHVSLYQQLAGKKVYEGTLVE 136 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 S L + Q+ I + ARL + Sbjct: 137 LSAKEMTLNFMDKTRHR----QVVIDRSKVAQARLAI 169 >gi|322382350|ref|ZP_08056257.1| hypothetical protein PL1_2630 [Paenibacillus larvae subsp. larvae B-3650] gi|321153703|gb|EFX46078.1| hypothetical protein PL1_2630 [Paenibacillus larvae subsp. larvae B-3650] Length = 153 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 75/156 (48%), Gaps = 9/156 (5%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISP 78 + + +++ + E F V I ++E N L+++V++ +G + + DC +S+ +S Sbjct: 4 SIKSIVEEMMKDYLTENGFELVDIEYVKEGSNWFLRVYVDKLEGGIDIEDCGRISEYLSA 63 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LD ++ I Y LEVSSPG +RP+ + D + G V + ++ G+++ Sbjct: 64 KLDEKDPIPTAYFLEVSSPGAERPLKKPQDIAKSVGKHVFITTYEPVDNAKEFEGELLSF 123 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ K+ +I ++ + SARL + Sbjct: 124 DGETLVVKTAKKKS--------SIPYEKVASARLAI 151 >gi|315302975|ref|ZP_07873695.1| conserved hypothetical protein [Listeria ivanovii FSL F6-596] gi|313628655|gb|EFR97068.1| conserved hypothetical protein [Listeria ivanovii FSL F6-596] Length = 155 Score = 170 bits (432), Expect = 7e-41, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 72/155 (46%), Gaps = 6/155 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + +++ P+ +E+ V I+ +E N L+IF+++ DG + + +C +S+ +S Sbjct: 4 VLDQVEAIVAPITDELHLELVDIAFEKEGPNWFLRIFIDK-DGGVDIDECAAVSEKVSEK 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +D + I +Y LEVSSPG +RP+ ++ DF+ V ++ G + Sbjct: 63 MDESDPITQNYFLEVSSPGAERPLKKEQDFVNAISKYVHVTSYEPIDGRKMWEGTLESFD 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + K + I D + ARL + Sbjct: 123 GETLVITITDKTRK----ITCEIPKDKVAKARLAI 153 >gi|89095216|ref|ZP_01168139.1| YhbC-like protein [Oceanospirillum sp. MED92] gi|89080513|gb|EAR59762.1| YhbC-like protein [Oceanospirillum sp. MED92] Length = 151 Score = 170 bits (432), Expect = 7e-41, Method: Composition-based stats. Identities = 35/150 (23%), Positives = 75/150 (50%), Gaps = 10/150 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +I+P + + F I L + K+ L+++++ ++G + + DC ++S +S I+DVE Sbjct: 8 LHELIEPSVSALGFELWGIEFLSQGKHSTLRVYIDSENG-INVDDCAKVSHQVSGIMDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I G+Y LEVSSPG++RP+ F + G + + ++ ++K G + G Sbjct: 67 DPIAGNYTLEVSSPGMERPLFTLEQFAAYAGSEIQIRLRVAFEGRRKFKGVLNGVEGDDV 126 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + + + + A +I Sbjct: 127 LVVVDNE--------EYMLPIEYIDRANII 148 >gi|302389799|ref|YP_003825620.1| protein of unknown function DUF150 [Thermosediminibacter oceani DSM 16646] gi|302200427|gb|ADL07997.1| protein of unknown function DUF150 [Thermosediminibacter oceani DSM 16646] Length = 162 Score = 170 bits (432), Expect = 8e-41, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 79/153 (51%), Gaps = 10/153 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + + + VI + F V + ++E L+ ++++ G +TL DC+E+S+ IS Sbjct: 6 ILKKVWDIGERVIHDRGFELVDVEFVQEAGSWYLRYYIDKP-GGITLDDCQEVSEEISRR 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD+E+ I Y LEVSSPG++RP+ ++ DFL++ G V ++ K+ G ++ Sbjct: 65 LDIEDPIPHSYILEVSSPGVERPLKKEKDFLKYIGSEVEIKVFEPIAGKKAFTGTLIDYK 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + L ++ I I + + SA+L Sbjct: 125 DGSVVLR--------VDSSIINIPHEKISSAKL 149 >gi|308068696|ref|YP_003870301.1| hypothetical protein PPE_01927 [Paenibacillus polymyxa E681] gi|305857975|gb|ADM69763.1| Conserved hypothetical protein [Paenibacillus polymyxa E681] Length = 153 Score = 170 bits (432), Expect = 8e-41, Method: Composition-based stats. Identities = 37/151 (24%), Positives = 71/151 (47%), Gaps = 10/151 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + + QP ++E F V + ++E N L++FV++ DG + L DC +S+ + LD Sbjct: 10 VEEMAQPYLDEHGFELVDVEYVKEGSNWFLRVFVDK-DGGIDLDDCSMISEYLGQKLDEN 68 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + + Y LEVSSPG +RP+ + D + G V ++ G+++ + Sbjct: 69 DPVSTAYFLEVSSPGAERPLKKAEDVTKAVGKNVFVTTYEPINGLKEFEGRLLSFEDGEL 128 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ ++ I +D + ARL + Sbjct: 129 TVQSGQKKHV--------IPYDKVAGARLAI 151 >gi|153855239|ref|ZP_01996405.1| hypothetical protein DORLON_02419 [Dorea longicatena DSM 13814] gi|149752238|gb|EDM62169.1| hypothetical protein DORLON_02419 [Dorea longicatena DSM 13814] Length = 150 Score = 170 bits (432), Expect = 9e-41, Method: Composition-based stats. Identities = 44/142 (30%), Positives = 74/142 (52%), Gaps = 2/142 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++ P++EE F V + ++E N L+ ++++ G + + DCE +S+ +S IL Sbjct: 3 EQKTEEILLPIVEEYGFELVDVEYVKEGSNWYLRAYIDKP-GGIGVNDCEVVSRRLSDIL 61 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D ++ IE Y LEVSSPG+ RP+ ++ DF R G V K++ G + E Sbjct: 62 DEKDYIEDSYILEVSSPGLGRPLKKEKDFKRSLGEEVEIRTYRMIDRKKEFTGILKDYDE 121 Query: 141 TGFFLEKEKRGEKDMNELQIAI 162 T +E E EK + +IA+ Sbjct: 122 TTVTIEMEDETEKTFEKSEIAL 143 >gi|313633404|gb|EFS00240.1| conserved hypothetical protein [Listeria seeligeri FSL N1-067] Length = 155 Score = 170 bits (432), Expect = 9e-41, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 72/155 (46%), Gaps = 6/155 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + +++ P+ +E+ V I+ +E N L+IF+++ DG + + +C +S+ +S Sbjct: 4 VLDQVEAIVAPITDELHLELVDIAFEKEGPNWFLRIFIDK-DGGVDIDECAAVSEKVSEK 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +D + I +Y LEVSSPG +RP+ ++ DF+ V ++ G + Sbjct: 63 MDESDPITQNYFLEVSSPGAERPLKKEQDFVNAVSKYVHVTSYEPIDGRKMWEGTLESFD 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + K + I D + ARL + Sbjct: 123 GETLVITITDKTRK----ITCEIPKDKVAKARLAI 153 >gi|206900815|ref|YP_002250929.1| YlxS [Dictyoglomus thermophilum H-6-12] gi|259585753|sp|B5YEH1|RIMP_DICT6 RecName: Full=Ribosome maturation factor rimP gi|206739918|gb|ACI18976.1| YlxS [Dictyoglomus thermophilum H-6-12] Length = 156 Score = 170 bits (432), Expect = 9e-41, Method: Composition-based stats. Identities = 48/157 (30%), Positives = 81/157 (51%), Gaps = 10/157 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 M + +++P+ E+ S+ V + E +L++++++ G +T+ DC LS+ IS Sbjct: 7 MEFYKKLKEIVEPICEKYSYELVDLEYRREPHGWVLRVYIDKV-GGVTVEDCAYLSEKIS 65 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD+++ I Y LEVSSPG+DRP+ RK DF R G V ++ K+K GKI Sbjct: 66 KELDIKDPIPHSYILEVSSPGLDRPLKRKRDFERHMGEKVNITLLEEIEGKKKFEGKIFK 125 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E+ L +++ + I + + A LIV Sbjct: 126 VDESSVTL--------KIDDSFVTIPLEKIKKAMLIV 154 >gi|325578297|ref|ZP_08148432.1| YhbC family protein [Haemophilus parainfluenzae ATCC 33392] gi|301156200|emb|CBW15671.1| conserved protein [Haemophilus parainfluenzae T3T1] gi|325160033|gb|EGC72162.1| YhbC family protein [Haemophilus parainfluenzae ATCC 33392] Length = 151 Score = 170 bits (432), Expect = 9e-41, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 77/154 (50%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + ++Q +E++ I + +++F++++ G + + DC ++S+ +S I Sbjct: 4 LEQKLQEMLQGAVEDLGCELWGIECQRAGRFMTVRLFIDKE-GGVGVDDCADVSRQVSAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ F R+ G +A + + D++K GK+ Sbjct: 63 LDVEDPIADKYNLEVSSPGLDRPLFTLEQFQRYVGEDIAVHLRIPVLDRRKWQGKLEKIE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + + Q+ I F ++ A +I Sbjct: 123 NDMLTLIVDG-------QEQVLI-FGNIQKANVI 148 >gi|148556721|ref|YP_001264303.1| hypothetical protein Swit_3820 [Sphingomonas wittichii RW1] gi|259586199|sp|A5VCZ9|RIMP_SPHWW RecName: Full=Ribosome maturation factor rimP gi|148501911|gb|ABQ70165.1| protein of unknown function DUF150 [Sphingomonas wittichii RW1] Length = 186 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 51/166 (30%), Positives = 85/166 (51%), Gaps = 9/166 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDD-GNMTLRDCEELSQAI 76 M ++ +I+P + + V+++ K + LQ+ ER D + + DCE LS+ I Sbjct: 1 MADIAALTKLIEPEAKALGLDLVRVAFFGGKSDPTLQVMAERPDTRQLDIADCEALSRRI 60 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 S D + IE YRLEVSSPGIDRP+ R D+ W+G ++ +++ G+I+ Sbjct: 61 SDKFDELDPIEDAYRLEVSSPGIDRPLTRVKDWADWSGFDARVKLAAPLDGRKQFDGRIV 120 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS 182 + L K GE + + + SA+LI+TD L++A+ Sbjct: 121 ASDGDSVTLGVNKLGE-------VTVPLAQIASAKLILTDALIKAT 159 >gi|302392349|ref|YP_003828169.1| hypothetical protein Acear_1598 [Acetohalobium arabaticum DSM 5501] gi|302204426|gb|ADL13104.1| protein of unknown function DUF150 [Acetohalobium arabaticum DSM 5501] Length = 153 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 45/155 (29%), Positives = 84/155 (54%), Gaps = 9/155 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 +A I + +P++E+ V +E + +++FV++ +G +TL DC+++S+ IS Sbjct: 5 IADYIFDLARPIVEDHGLELVDTEYQKEGQDWTVRVFVDKPEG-VTLDDCQKISREISDR 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD+E+ IE Y LEVSSPG+DRP+ + DF R+ GH++ ++ G+++ Sbjct: 64 LDIEDPIEKSYILEVSSPGLDRPLKDEEDFKRFTGHLIDVSTYAPVNGEKSFTGELLEII 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + L+ + N+ + IS D + A L + Sbjct: 124 DDKVKLKLD-------NDDVVEISRDKIAKANLAL 151 >gi|227544952|ref|ZP_03975001.1| protein of hypothetical function DUF150 [Lactobacillus reuteri CF48-3A] gi|300910017|ref|ZP_07127477.1| protein of hypothetical function DUF150 [Lactobacillus reuteri SD2112] gi|77745317|gb|ABB02559.1| unknown [Lactobacillus reuteri] gi|227185063|gb|EEI65134.1| protein of hypothetical function DUF150 [Lactobacillus reuteri CF48-3A] gi|300892665|gb|EFK86025.1| protein of hypothetical function DUF150 [Lactobacillus reuteri SD2112] Length = 162 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 75/158 (47%), Gaps = 8/158 (5%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + ++ ++ P++++ F + ++E K+ L++++++ DG +TL DC +S +S Sbjct: 8 SVVETVTDLVTPILQDHDFYLYDLEFVKEGKSWYLRVYIDK-DGGITLEDCALVSDELSE 66 Query: 79 ILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 LD + I Y LEVSSPG +RP+ ++ D+ R H + + ++ G + Sbjct: 67 ALDNVEPDPIPQAYFLEVSSPGAERPLKKEEDYQRAIDHYIHISLYQQINGQKVYEGTLT 126 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 S L+ + QI I + ARL + Sbjct: 127 QLSNKEITLDYLDKTRHR----QITIDRQKIAQARLAI 160 >gi|296533458|ref|ZP_06896040.1| protein of hypothetical function DUF150 [Roseomonas cervicalis ATCC 49957] gi|296266213|gb|EFH12256.1| protein of hypothetical function DUF150 [Roseomonas cervicalis ATCC 49957] Length = 195 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 50/164 (30%), Positives = 88/164 (53%), Gaps = 8/164 (4%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-MTLRDCE 70 E + + GL I++ IQP + M + V++ + ++ +Q+ +R DG + + DCE Sbjct: 4 EDDLPQNEGLEARIAAAIQPTLTAMGYEIVRVQIHGKQTPTVQVMADRADGALIGVADCE 63 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 +S A+ +LDV++ G + LEVSSPGIDRP+ R D+LR+ GH+ E+ + +++ Sbjct: 64 AISHAVGAVLDVDDPFSGEWNLEVSSPGIDRPLTRTKDWLRFTGHLAIAEMSIPFEGRRR 123 Query: 131 LIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G I+G E L E+ E A+ + A+L++ Sbjct: 124 FRGTILGADEASVRLRLEEGTE-------YALPRHDIRRAKLVL 160 >gi|331701345|ref|YP_004398304.1| ribosome maturation factor rimP [Lactobacillus buchneri NRRL B-30929] gi|329128688|gb|AEB73241.1| Ribosome maturation factor rimP [Lactobacillus buchneri NRRL B-30929] Length = 157 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 78/158 (49%), Gaps = 8/158 (5%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + + V++P++E+ SF + ++E K+ L++++++ G +T+ DC +S +S Sbjct: 3 NVVETVKQVVEPILEKHSFYLFDVEFVKENKSWYLRVYIDKK-GGITIDDCVLVSDELSE 61 Query: 79 ILDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 LD + I Y LEVSSPG +RP+ ++ + G + + + + G + Sbjct: 62 KLDAMDPDPIPQAYFLEVSSPGAERPLRNDAELKQAIGEYIHVSLYQNLNGNKTFEGILK 121 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + L+ +K G++D + + + + ARL + Sbjct: 122 SLDDDKLVLQNDKWGKQD----TLEVPRNLIAKARLAI 155 >gi|315658445|ref|ZP_07911317.1| protein of hypothetical function DUF150 [Staphylococcus lugdunensis M23590] gi|315496774|gb|EFU85097.1| protein of hypothetical function DUF150 [Staphylococcus lugdunensis M23590] Length = 155 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 87/155 (56%), Gaps = 6/155 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + ++ ++IQPV+E +++ V++ ++E K+ L++ ++++ G + L DC S+ IS + Sbjct: 4 ITEEVETLIQPVLEALNYELVEVEFVKEGKDHFLRVSIDKE-GGVDLNDCTLASEKISEV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +D + I+ Y L+V+SPG +RP+ ++ D+ R + + + ++ +G ++ + Sbjct: 63 MDEHDPIKEMYYLDVASPGAERPIKKEQDYQRAIQQPIFVSLYAPIENNKEWLGILVEVT 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E +++ +K QI+I + + AR V Sbjct: 123 AETITMEVKEKAKKK----QISIPRNKIAKARHAV 153 >gi|313638096|gb|EFS03363.1| conserved hypothetical protein [Listeria seeligeri FSL S4-171] Length = 155 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 72/155 (46%), Gaps = 6/155 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + +++ P+ +E+ V I+ +E N L+IF+++ DG + + +C +S+ +S Sbjct: 4 VLDQVEAIVAPITDELHLELVDIAFEKEGPNWFLRIFIDK-DGGVDIDECAAVSEKVSEK 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +D + I +Y LEVSSPG +RP+ ++ DF+ V ++ G + Sbjct: 63 MDESDPITQNYFLEVSSPGAERPLKKEQDFVNAVSKYVHVTSYEPIDGRKMWEGTLESYD 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + K + I D + ARL + Sbjct: 123 GETLVITITDKTRK----ITCEIPKDKVAKARLAI 153 >gi|154706898|ref|YP_001423971.1| hypothetical protein CBUD_0561 [Coxiella burnetii Dugway 5J108-111] gi|189040247|sp|A9KBL9|RIMP_COXBN RecName: Full=Ribosome maturation factor rimP gi|154356184|gb|ABS77646.1| hypothetical cytosolic protein [Coxiella burnetii Dugway 5J108-111] Length = 153 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M A + +I P +E + F V +LQ+FV++ G + L +C ++S+ IS Sbjct: 1 MSQARTLHRLIAPAVEALGFELVGCELFRRGATRILQVFVDKP-GGIGLDECAKVSRQIS 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I G Y LEVSSPG++RP+ + + R+ G+ + +++ G I+ Sbjct: 60 AVLDVEDPIRGRYTLEVSSPGLERPLYTANHYRRFIGNKAKIRLREPREGQRQFRGMIVA 119 Query: 138 TS-ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 E L+ + + K + + A LI Sbjct: 120 VDNEEQVTLQLDNKILK--------VPLGEIEKANLI 148 >gi|289434602|ref|YP_003464474.1| hypothetical protein lse_1237 [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170846|emb|CBH27388.1| conserved hypothetical protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 155 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 72/155 (46%), Gaps = 6/155 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + +++ P+ +E+ V I+ +E N L++F+++ DG + + +C +S+ +S Sbjct: 4 VLDQVEAIVAPITDELHLELVDIAFEKEGPNWFLRVFIDK-DGGVDIDECAAVSEKVSEK 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +D + I +Y LEVSSPG +RP+ ++ DF+ V ++ G + Sbjct: 63 MDESDPITQNYFLEVSSPGAERPLKKEQDFVNAVSKYVHVTSYEPIDGRKMWEGTLESYD 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + K + I D + ARL + Sbjct: 123 GETLVITITDKTRK----ITCEIPKDKVAKARLAI 153 >gi|242373556|ref|ZP_04819130.1| protein of hypothetical function DUF150 [Staphylococcus epidermidis M23864:W1] gi|242348919|gb|EES40521.1| protein of hypothetical function DUF150 [Staphylococcus epidermidis M23864:W1] Length = 178 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 79/155 (50%), Gaps = 6/155 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + S+IQP+++++ F V+I ++E K+ L+I ++++ G + L DC S+ IS Sbjct: 27 VTEQVESIIQPILDDLKFELVEIEYVKEGKDRFLRISIDKE-GGVDLNDCTLASEKISEA 85 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +D + I Y L+V+SPG +RP+ + DF V + +++ +G + Sbjct: 86 MDENDPIPEMYYLDVASPGAERPIKKDKDFHNAVTQPVFISLYAPIEGEKEWLGILQSVD 145 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + +E +++ + QI I + + AR V Sbjct: 146 DDNIVMEVKEKSKTK----QIEIPRNKIAKARHAV 176 >gi|86157526|ref|YP_464311.1| hypothetical protein Adeh_1099 [Anaeromyxobacter dehalogenans 2CP-C] gi|123499926|sp|Q2IPZ0|RIMP_ANADE RecName: Full=Ribosome maturation factor rimP gi|85774037|gb|ABC80874.1| hypothetical protein Adeh_1099 [Anaeromyxobacter dehalogenans 2CP-C] Length = 171 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 43/165 (26%), Positives = 78/165 (47%), Gaps = 17/165 (10%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 G+ +A + S+++PV+E + V++ L++F+++ G + + DC+ +S+ Sbjct: 4 IGEQSIAEQVRSLLEPVLERDGYELVEVEWARLAGRWTLRVFIDKA-GGVGIDDCQAVSK 62 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD------- 127 + PILDV + IE Y LEVSSPG+DRP+ + DF R+ G V + Sbjct: 63 TVEPILDVADFIEPAYDLEVSSPGLDRPLRKPRDFDRYAGQRVHVKAYGPVAGTAPGSPA 122 Query: 128 KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ G + G + L D++ + D + A L Sbjct: 123 RKHWTGVLKGFRDGAVEL--------DVDGALHRVPHDQIAKANL 159 >gi|288940249|ref|YP_003442489.1| hypothetical protein Alvin_0500 [Allochromatium vinosum DSM 180] gi|288895621|gb|ADC61457.1| protein of unknown function DUF150 [Allochromatium vinosum DSM 180] Length = 151 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 46/153 (30%), Positives = 77/153 (50%), Gaps = 10/153 (6%) Query: 22 AGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++ + + V+E + + V + + L+++++ + G +TL DC +S +S +L Sbjct: 5 DSQLTLLARRVVEPLGYELVGVEYFQKGGGATLRVYIDHERG-ITLDDCTAVSHQLSGVL 63 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+DRP+V F R+ G V + ++KL G ++G Sbjct: 64 DVEDPISDQYDLEVSSPGLDRPLVFPEHFERFAGSRVRIRLSEKIEGRRKLEGVLLGVVP 123 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 G L ++R I S+ SARLI Sbjct: 124 GGVALRADER--------DWEIPLTSIDSARLI 148 >gi|319787429|ref|YP_004146904.1| hypothetical protein Psesu_1831 [Pseudoxanthomonas suwonensis 11-1] gi|317465941|gb|ADV27673.1| protein of unknown function DUF150 [Pseudoxanthomonas suwonensis 11-1] Length = 192 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 39/165 (23%), Positives = 77/165 (46%), Gaps = 17/165 (10%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGN--------MTLRDCEEL 72 +I ++ P +E + + + L L+++++ +T+ DCE + Sbjct: 5 TSEIVQLLAPTVESLGLELLGVEYLPAPGGATLRLYIDVPAAGEGEEPARTVTIEDCEAV 64 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+ +S LDV + I G+Y LEVSSPG+DRP+ F+R+ G + L +++L Sbjct: 65 SREVSAQLDVADPISGNYTLEVSSPGMDRPLFAAEHFIRFLGQQAKVGLKLPQDGRRRLQ 124 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 G I+ ++ ++ + ++ D++ ARL+ E Sbjct: 125 GTILRVADGQV--------AFGLDNAEFVVALDNIDKARLVPDWE 161 >gi|259586217|sp|A4VPP2|RIMP_PSEU5 RecName: Full=Ribosome maturation factor rimP gi|327482027|gb|AEA85337.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166] Length = 152 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 77/152 (50%), Gaps = 10/152 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++ PV+E + ++ I + + ++ LL+++++ +G + + DCE++S+ +S +LD Sbjct: 6 EQLQALLAPVVEALGYQCWGIEFISQGRHSLLRVYIDHANG-ILIDDCEKVSRQLSGVLD 64 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I Y LEVSSPG+DRP+ ++ G V ++ ++ G + G E Sbjct: 65 VEDPISVDYTLEVSSPGMDRPLFTIEQYVAHVGDQVKIKLRSPFEGRRNFQGLLRGVEEQ 124 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + + D + A +I Sbjct: 125 DVVVLVDDH--------EYLLPIDMIDKANII 148 >gi|153207258|ref|ZP_01946022.1| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177'] gi|165918794|ref|ZP_02218880.1| conserved hypothetical protein [Coxiella burnetii RSA 334] gi|212218227|ref|YP_002305014.1| hypothetical protein CbuK_0601 [Coxiella burnetii CbuK_Q154] gi|226707776|sp|B6J6A9|RIMP_COXB1 RecName: Full=Ribosome maturation factor rimP gi|120576746|gb|EAX33370.1| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177'] gi|165917518|gb|EDR36122.1| conserved hypothetical protein [Coxiella burnetii RSA 334] gi|212012489|gb|ACJ19869.1| hypothetical cytosolic protein [Coxiella burnetii CbuK_Q154] Length = 153 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M A + +I P +E + F V +LQ+FV++ G + L +C ++S+ IS Sbjct: 1 MSQARTLHRLIAPAVEALGFELVGCELFRRGATTILQVFVDKP-GGIGLDECAKVSRQIS 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I G Y LEVSSPG++RP+ + + R+ G+ + +++ G I+ Sbjct: 60 AVLDVEDPIRGRYTLEVSSPGLERPLYTANHYRRFIGNKAKIRLREPREGQRQFRGMIVA 119 Query: 138 TS-ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 E L+ + + K + + A LI Sbjct: 120 VDNEEQVTLQLDNKILK--------VPLGEIEKANLI 148 >gi|304404289|ref|ZP_07385951.1| protein of unknown function DUF150 [Paenibacillus curdlanolyticus YK9] gi|304347267|gb|EFM13099.1| protein of unknown function DUF150 [Paenibacillus curdlanolyticus YK9] Length = 153 Score = 169 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 74/155 (47%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + +++P I+E F V + ++E N L+IFV+++ G + + +C +S+ +S Sbjct: 6 IKSTVEEMVKPFIDENGFELVDVEYVKEGSNWFLRIFVDKE-GGIDIDECGRVSEYLSEQ 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD ++ I Y LEVSSPG +RP+ + D + G V +++ G + + Sbjct: 65 LDQKDPITDAYFLEVSSPGAERPLKKPEDVHKAVGKHVYMTTYEPVHGQKEFEGLLQSFN 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + +R I + + SARL + Sbjct: 125 GEVVSIREGQR--------NFEIPYAKIASARLAI 151 >gi|259585813|sp|Q2SML5|RIMP_HAHCH RecName: Full=Ribosome maturation factor rimP Length = 150 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 79/156 (50%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M D+ +++PV+E M + + + K LL+I+++++ G + + DCE++S+ IS Sbjct: 1 MARKDDLYQLLKPVVEGMGCDFWGMDYIAQGKRSLLRIYIDKESG-VLVDDCEKVSRQIS 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ILDVE+ I+G Y LEVSSPG DRP+ + + G ++ + ++K G + Sbjct: 60 AILDVEDPIKGEYTLEVSSPGWDRPLFNVEQYKAYIGSIIEVRLQAPFNGRRKFKGLLAA 119 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L+ ++ + +++ A ++ Sbjct: 120 VENDEIVLQ--------VDAEEFIFPVETIDKANVV 147 >gi|167746759|ref|ZP_02418886.1| hypothetical protein ANACAC_01471 [Anaerostipes caccae DSM 14662] gi|167653719|gb|EDR97848.1| hypothetical protein ANACAC_01471 [Anaerostipes caccae DSM 14662] Length = 171 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 42/170 (24%), Positives = 82/170 (48%), Gaps = 10/170 (5%) Query: 6 FLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNM 64 F + + + G + ++ P+I+E F V + ++E N L+I+ ++ DG + Sbjct: 9 FAQKRRQGNLAGKAEIEQKTEELVTPIIDENHFELVDVEYVKEGANWYLRIYADK-DGGI 67 Query: 65 TLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS 124 ++ DC +S+A+ LD ++ I+ Y LEVSSPG+ RP+ ++ D+ R G V ++ + Sbjct: 68 SIDDCVLISRALEAKLDADDFIKDAYILEVSSPGLGRPLKKEKDYQRSIGQSVDIKLYKA 127 Query: 125 SGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +++ G + S+ L + S+ SARL + Sbjct: 128 IDKQKEFTGILKEYSKERIILSIGGTDQ--------EFETKSVASARLSL 169 >gi|296108418|ref|YP_003620119.1| putative protein conserved in bacteria [Legionella pneumophila 2300/99 Alcoy] gi|295650320|gb|ADG26167.1| putative protein conserved in bacteria [Legionella pneumophila 2300/99 Alcoy] gi|307611646|emb|CBX01333.1| hypothetical protein LPW_30281 [Legionella pneumophila 130b] Length = 131 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 46/140 (32%), Positives = 75/140 (53%), Gaps = 10/140 (7%) Query: 36 MSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEV 94 M + L + K+ LL+I++++ DG + + DC+E+S+ +S +LDVE+ I GHY LE+ Sbjct: 1 MGYELWGCEYLSQGKHSLLRIYIDKPDG-IGIDDCQEVSKQVSAMLDVEDPIPGHYSLEI 59 Query: 95 SSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKD 154 SSPGI RP+ + R+ G+ + + K+KL G I+ SE L D Sbjct: 60 SSPGIPRPLFSIWQYQRYLGYEIHVKTFKPVNGKRKLSGIIVSASEDTIVL--------D 111 Query: 155 MNELQIAISFDSLLSARLIV 174 +N I +++ A L V Sbjct: 112 INNEHQEILLSNIVKANLTV 131 >gi|148543927|ref|YP_001271297.1| hypothetical protein Lreu_0695 [Lactobacillus reuteri DSM 20016] gi|184153323|ref|YP_001841664.1| hypothetical protein LAR_0668 [Lactobacillus reuteri JCM 1112] gi|167016762|sp|A5VJD6|RIMP_LACRD RecName: Full=Ribosome maturation factor rimP gi|226708007|sp|B2G6V2|RIMP_LACRJ RecName: Full=Ribosome maturation factor rimP gi|148530961|gb|ABQ82960.1| protein of unknown function DUF150 [Lactobacillus reuteri DSM 20016] gi|183224667|dbj|BAG25184.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112] Length = 157 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 75/158 (47%), Gaps = 8/158 (5%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + ++ ++ P++++ F + ++E K+ L++++ + DG +TL DC +S +S Sbjct: 3 SVVETVTDLVTPILQDHDFYLYDLEFVKEGKSWYLRVYINK-DGGITLEDCALVSDELSE 61 Query: 79 ILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 LD + I Y LEVSSPG +RP+ ++ D+ R H + + ++ G + Sbjct: 62 ALDNVEPDPIPQAYFLEVSSPGAERPLKKEEDYQRAIDHYIHISLYQQINGQKVYEGTLT 121 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 S+ L+ + QI I + ARL + Sbjct: 122 QLSDKEITLDYLDKTRHR----QITIDRQKIAQARLAI 155 >gi|293390260|ref|ZP_06634594.1| protein YhbC [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950794|gb|EFE00913.1| protein YhbC [Aggregatibacter actinomycetemcomitans D7S-1] Length = 151 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 80/154 (51%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 L + ++Q +E++ + I +++F++++ G +T+ DC ++S+ +S + Sbjct: 4 LEQKLQDLLQGSVEDLGCQLWGIECQRVGRYLTVRLFIDKE-GGVTVEDCADVSRQVSAV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ + R+ G + + + D++K G+++ Sbjct: 63 LDVEDPIADKYNLEVSSPGLDRPLFTLAQCARYVGQEILVHLRIPVADRRKWQGELVKIE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L +K+ + ++FD++ A ++ Sbjct: 123 NDMITLIVDKQEQI--------LAFDNIQKASVV 148 >gi|290473445|ref|YP_003466312.1| YhbC-like protein (fragment) [Xenorhabdus bovienii SS-2004] gi|289172745|emb|CBJ79516.1| YhbC-like protein (fragment) [Xenorhabdus bovienii SS-2004] Length = 140 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 75/146 (51%), Gaps = 9/146 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I +E + F V + + + L+++++ ++G +T+ +C ++S +S +LDVE+ I Sbjct: 1 MISAPVEALGFELVGLEFIRARVSTLRVYIDSEEG-ITVDNCADVSHQVSAVLDVEDPIS 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LE+SSPG++RP+ + + R+ G V+ + ++ ++++ G I + Sbjct: 60 VLYNLEISSPGLERPLFKAEHYQRFMGEEVSLVLRMAMQNRRRWQGIIKVVDGEMITVTV 119 Query: 148 EKRGEKDMNELQIAISFDSLLSARLI 173 + + E + ++ A L+ Sbjct: 120 DGKDEV--------FALSNIQKANLV 137 >gi|330807481|ref|YP_004351943.1| Sm_like superfamily [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375589|gb|AEA66939.1| Conserved hypothetical protein; Sm_like superfamily [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 152 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 77/154 (50%), Gaps = 10/154 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++ PV+ + + I + ++ LL+++++++ G + + DC +S+ IS +LD Sbjct: 6 EQLQALLAPVVVALGYECWGIEFSAQGRHSLLRVYIDKE-GGVLVDDCAIVSRQISGVLD 64 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I Y LEVSSPG++RP+ F + G V ++ ++ G + G Sbjct: 65 VEDPITSEYTLEVSSPGMERPLFTLEQFASFAGEQVKIKLRSPFEGRRNFQGLLRGV--- 121 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +E+ +++ + + D + A +I + Sbjct: 122 -----EEQDVVVQVDDHEFLLPIDMIDKANIIPS 150 >gi|332981611|ref|YP_004463052.1| hypothetical protein Mahau_1032 [Mahella australiensis 50-1 BON] gi|332699289|gb|AEE96230.1| protein of unknown function DUF150 [Mahella australiensis 50-1 BON] Length = 154 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 2/143 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 +A + ++ P++E+ F V I +E L+IF+++ DG +T+ DCE +S+ +S Sbjct: 6 VADTVRQLVMPILEDNGFELVDIEFKKEGAEQYLRIFIDKPDG-ITIDDCELVSRHLSDK 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + I Y LEVSSPGIDRP+ + DF R G V ++ S + G ++G Sbjct: 65 LDEIDPIPQAYILEVSSPGIDRPLKTQRDFERSMGKQVEIKLYKQSMGHKTYKGTLVGFD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAI 162 + +E IA+ Sbjct: 125 DERVEIETVDNQHLSFGIKDIAL 147 >gi|319892282|ref|YP_004149157.1| transcription termination protein NusA-like protein [Staphylococcus pseudintermedius HKU10-03] gi|317161978|gb|ADV05521.1| transcription termination protein NusA-like protein [Staphylococcus pseudintermedius HKU10-03] gi|323464621|gb|ADX76774.1| conserved hypothetical protein [Staphylococcus pseudintermedius ED99] Length = 155 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 76/155 (49%), Gaps = 6/155 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + ++IQPV++E++F V + +E ++ L+I +++ G + L DC S+ IS + Sbjct: 4 VTEQVETIIQPVLDELNFELVDVEFAKEGRDHYLRIAIDKP-GGVDLNDCTLASERISEV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +D ++ I Y L+VSSPG +RP+ + F + + ++ +G + + Sbjct: 63 MDEQDPIPQAYYLDVSSPGAERPIKNEKGFQNAIEQPIFVSLYAPIEGDKEWLGHLKSVT 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + + + I I D + AR V Sbjct: 123 EDAITMEVKVKAKTK----TITIPRDKIAKARHAV 153 >gi|197121570|ref|YP_002133521.1| hypothetical protein AnaeK_1159 [Anaeromyxobacter sp. K] gi|259585696|sp|B4UHF7|RIMP_ANASK RecName: Full=Ribosome maturation factor rimP gi|196171419|gb|ACG72392.1| protein of unknown function DUF150 [Anaeromyxobacter sp. K] Length = 171 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 43/165 (26%), Positives = 80/165 (48%), Gaps = 17/165 (10%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 G+ +A + S+++PV+E + V++ L++F+++ G + + DC+ +S+ Sbjct: 4 IGEQSIAEQVRSLLEPVLERDGYELVEVEWARLAGRWTLRVFIDKA-GGVGIDDCQAVSK 62 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD------- 127 + PILDV ++IE Y LEVSSPG+DRP+ + DF R+ G V + Sbjct: 63 TVEPILDVADVIEPAYDLEVSSPGLDRPLRKPRDFDRYAGQRVHVKAYGPVAGTAPGAPA 122 Query: 128 KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ G + G + L D++ + + D + A L Sbjct: 123 RKHWTGVLKGFRDGAVEL--------DVDGVLHRVPHDQIAKANL 159 >gi|167758064|ref|ZP_02430191.1| hypothetical protein CLOSCI_00402 [Clostridium scindens ATCC 35704] gi|167663961|gb|EDS08091.1| hypothetical protein CLOSCI_00402 [Clostridium scindens ATCC 35704] Length = 155 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 39/142 (27%), Positives = 71/142 (50%), Gaps = 2/142 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPIL 80 +++ P++EE F V + ++E L+ ++++ G + + DCE +S+ +S IL Sbjct: 8 EQKTEAILMPIVEEHGFELVDVEYVKEGGTWYLRAYIDKP-GGINVDDCEVVSRRLSDIL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D ++ IE Y LEVSSPG+ RP+ ++ DF R G V +++ G + + Sbjct: 67 DEKDYIEEAYILEVSSPGLGRPLKKEKDFKRSLGEEVDVRTYRMIEKQKEFTGLLKDYDD 126 Query: 141 TGFFLEKEKRGEKDMNELQIAI 162 +E E K + IA+ Sbjct: 127 ATVTIEMEDGTLKTFEKSDIAL 148 >gi|90961544|ref|YP_535460.1| hypothetical protein LSL_0568 [Lactobacillus salivarius UCC118] gi|227890632|ref|ZP_04008437.1| protein of hypothetical function DUF150 [Lactobacillus salivarius ATCC 11741] gi|301300280|ref|ZP_07206489.1| conserved hypothetical protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|122449172|sp|Q1WUF8|RIMP_LACS1 RecName: Full=Ribosome maturation factor rimP gi|90820738|gb|ABD99377.1| Conserved hypothetical protein [Lactobacillus salivarius UCC118] gi|227867570|gb|EEJ74991.1| protein of hypothetical function DUF150 [Lactobacillus salivarius ATCC 11741] gi|300852121|gb|EFK79796.1| conserved hypothetical protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 157 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 77/158 (48%), Gaps = 8/158 (5%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + +++++ P+++E F V + ++E K+ L++++++ +G + + +C +S +S Sbjct: 3 SVVETVTNLVTPILDENHFELVDVEFVKEGKSWYLRVYIDKPNG-INIEECALVSDKLSE 61 Query: 79 ILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 LD + I Y LEVSSPG +RP+ ++ D+ R + + + ++ G ++ Sbjct: 62 KLDSCDPDPIPQAYYLEVSSPGAERPLKKEKDYERALNKYIHISLYQAIDGQKVYEGTMV 121 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ LE + + + + ARL + Sbjct: 122 DLNKETLTLEYRVKTRT----VTKTFDRNKIAKARLAI 155 >gi|228474945|ref|ZP_04059673.1| conserved hypothetical protein [Staphylococcus hominis SK119] gi|314936574|ref|ZP_07843921.1| conserved hypothetical protein [Staphylococcus hominis subsp. hominis C80] gi|228270930|gb|EEK12318.1| conserved hypothetical protein [Staphylococcus hominis SK119] gi|313655193|gb|EFS18938.1| conserved hypothetical protein [Staphylococcus hominis subsp. hominis C80] Length = 155 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 78/155 (50%), Gaps = 6/155 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + ++ ++I P++++++F V + +E K+ L+I ++++ G + L DC S+ IS Sbjct: 4 ITEEVETIITPILDDLNFELVDVEYAKEGKDRFLRISIDKE-GGVDLNDCTLASEKISEA 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +D + I Y L+V+SPG +RP+ ++ D+ V + ++ +G + Sbjct: 63 MDQNDPIPEMYYLDVASPGAERPLKKEKDYQNAIEQPVFVSLYAPIEGDKEWLGILKSVD 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + +E +++ +K I I + + AR V Sbjct: 123 DDTITMEVKEKSKKK----TIEIPRNKIAKARHAV 153 >gi|148825865|ref|YP_001290618.1| hypothetical protein CGSHiEE_04150 [Haemophilus influenzae PittEE] gi|229846822|ref|ZP_04466929.1| hypothetical protein CGSHi7P49H1_02333 [Haemophilus influenzae 7P49H1] gi|167012908|sp|A5UBT4|RIMP_HAEIE RecName: Full=Ribosome maturation factor rimP gi|148716025|gb|ABQ98235.1| hypothetical protein CGSHiEE_04150 [Haemophilus influenzae PittEE] gi|229810311|gb|EEP46030.1| hypothetical protein CGSHi7P49H1_02333 [Haemophilus influenzae 7P49H1] gi|309973010|gb|ADO96211.1| 30S ribosomal maturation protein RimP [Haemophilus influenzae R2846] Length = 151 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 79/154 (51%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ ++Q +E++ I + +++F+++ DG +T+ DC ++S+ +S I Sbjct: 4 LEQNLQEMLQDAVEDLGCELWGIECQRMGRFMTVRLFIDK-DGGVTVDDCADVSRQVSAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ F R+ G +A + + +++K GK+ Sbjct: 63 LDVEDPIADKYNLEVSSPGLDRPLFTLPQFERYIGQDIAVHLRIPVMERRKWQGKLERIE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + L + + + + F ++ A ++ Sbjct: 123 KDMITLIVDDQEQI--------LVFGNIQKANVV 148 >gi|126175441|ref|YP_001051590.1| hypothetical protein Sbal_3241 [Shewanella baltica OS155] gi|153001791|ref|YP_001367472.1| hypothetical protein Shew185_3282 [Shewanella baltica OS185] gi|160876525|ref|YP_001555841.1| hypothetical protein Sbal195_3419 [Shewanella baltica OS195] gi|217972313|ref|YP_002357064.1| hypothetical protein Sbal223_1126 [Shewanella baltica OS223] gi|304410267|ref|ZP_07391886.1| protein of unknown function DUF150 [Shewanella baltica OS183] gi|307302022|ref|ZP_07581780.1| protein of unknown function DUF150 [Shewanella baltica BA175] gi|166990740|sp|A3D7K8|RIMP_SHEB5 RecName: Full=Ribosome maturation factor rimP gi|166990756|sp|A6WRH0|RIMP_SHEB8 RecName: Full=Ribosome maturation factor rimP gi|189040141|sp|A9KZX3|RIMP_SHEB9 RecName: Full=Ribosome maturation factor rimP gi|254799945|sp|B8E6N0|RIMP_SHEB2 RecName: Full=Ribosome maturation factor rimP gi|125998646|gb|ABN62721.1| protein of unknown function DUF150 [Shewanella baltica OS155] gi|151366409|gb|ABS09409.1| protein of unknown function DUF150 [Shewanella baltica OS185] gi|160862047|gb|ABX50581.1| protein of unknown function DUF150 [Shewanella baltica OS195] gi|217497448|gb|ACK45641.1| protein of unknown function DUF150 [Shewanella baltica OS223] gi|304351676|gb|EFM16075.1| protein of unknown function DUF150 [Shewanella baltica OS183] gi|306914060|gb|EFN44481.1| protein of unknown function DUF150 [Shewanella baltica BA175] gi|315268719|gb|ADT95572.1| protein of unknown function DUF150 [Shewanella baltica OS678] Length = 151 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 76/154 (49%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ +++ +E + F+ I ++ K+ L++F++ ++G + + DC S+ +S + Sbjct: 4 LEFRLAEMLKVPVEALGFQLWGIEYVQAGKHSTLRVFIDGENG-INIEDCANASRQVSAV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ + + G V ++ + + L G I Sbjct: 63 LDVEDPISTEYTLEVSSPGVDRPLFTAEQYAGYVGEDVKLQLTMPVDGSRNLKGAITAVD 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L +N ++ ++ D++ LI Sbjct: 123 GQMLSL--------KVNGKELVVALDNIRKGNLI 148 >gi|289550943|ref|YP_003471847.1| hypothetical protein SLGD_01629 [Staphylococcus lugdunensis HKU09-01] gi|289180475|gb|ADC87720.1| hypothetical protein SLGD_01629 [Staphylococcus lugdunensis HKU09-01] Length = 155 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 87/155 (56%), Gaps = 6/155 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + ++ ++IQPV+E +++ V++ ++E K+ L++ ++++ G + L DC S+ IS + Sbjct: 4 ITEEVETLIQPVLEALNYELVEVEFVKEGKDHFLRVSIDKE-GGVDLNDCTLASEKISEV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +D + I+ Y L+V+SPG +RP+ ++ D+ + + + + ++ +G ++ + Sbjct: 63 MDEHDPIKEMYYLDVASPGAERPIKKEQDYQKAIQQPIFVSLYAPIENNKEWLGILVEVT 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E +++ +K QI+I + + AR V Sbjct: 123 AETITMEVKEKAKKK----QISIPRNKIAKARHAV 153 >gi|225027046|ref|ZP_03716238.1| hypothetical protein EUBHAL_01302 [Eubacterium hallii DSM 3353] gi|224955510|gb|EEG36719.1| hypothetical protein EUBHAL_01302 [Eubacterium hallii DSM 3353] Length = 162 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 7/162 (4%) Query: 9 SKYEPRI-FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTL 66 S E RI + ++ P+IEE F V + + E N L+++ +++ G + + Sbjct: 2 SGKEVRINMKRTEIVAKTEELVTPIIEENHFELVDVEYVREGANWYLRVYADKE-GGINI 60 Query: 67 RDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 DC +S+A+ LD E+ I Y LEVSSPG+ RP+ ++ DF R G V C++ + Sbjct: 61 DDCVLISRALEEKLDAEDFISDAYILEVSSPGLGRPLKKEKDFKRSLGKSVECKLYKAIN 120 Query: 127 DKQKLIGKIMGTSETGFFLEKEKR----GEKDMNELQIAISF 164 +++ G + +E +E E KD+ +++AI F Sbjct: 121 KQKEFEGILKDFTEDTVTIETEGNELVLDRKDIAMIRLAIDF 162 >gi|332188274|ref|ZP_08390001.1| hypothetical protein SUS17_3404 [Sphingomonas sp. S17] gi|332011670|gb|EGI53748.1| hypothetical protein SUS17_3404 [Sphingomonas sp. S17] Length = 192 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 14/172 (8%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDD-GNMTLRDCEELSQAI 76 M ++ +I+P + + F V++ + LQ+ ER D + + DC +LS+ I Sbjct: 1 MADIALLTQLIEPEAKALGFELVRVKMYGGTSDPTLQVMAERPDTRQLNIDDCADLSRRI 60 Query: 77 SPILDV-----ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 S ++D + I+ YRLEVSSPGIDRP+ R DF W GH + +++ Sbjct: 61 SDVMDALEEQGRDPIDHAYRLEVSSPGIDRPLTRLKDFADWAGHEARITLAEKLNGRKQF 120 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 G + G + D E++ + F ++ A+L++TD L+ A++ Sbjct: 121 KGDLAGIEGDNVII-------VDGEEVRHKLPFAAIEDAKLVMTDRLIAATV 165 >gi|261867878|ref|YP_003255800.1| hypothetical protein D11S_1199 [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413210|gb|ACX82581.1| protein YhbC [Aggregatibacter actinomycetemcomitans D11S-1] Length = 151 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 78/154 (50%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 L + ++Q +E+ + I +++F++++ G +T+ DC ++S+ +S + Sbjct: 4 LEQKLQDLLQGSVEDFGCQLWGIECQRVGRYLTVRLFIDKE-GGVTVEDCADVSRQVSAV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ + + R+ G + + + D++K G++ Sbjct: 63 LDVEDPIADKYNLEVSSPGLDRPLFTLAQYARYVGQEILVHLRIPVADRRKWQGELAKIE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L +K+ + ++F ++ A ++ Sbjct: 123 NDMITLIVDKQEQI--------LAFGNIQKASVV 148 >gi|260914258|ref|ZP_05920731.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325] gi|260631891|gb|EEX50069.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325] Length = 162 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 76/154 (49%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + ++Q +E++ I L ++++++++ G +T+ DC ++S+ +S I Sbjct: 15 LEQKLHELLQSTVEDLGCELWGIECQRSGRFLTVRLYIDKE-GGVTVDDCADVSRQVSAI 73 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DR + + + R+ G + + + D++K GK+ Sbjct: 74 LDVEDPIADKYNLEVSSPGLDRALFTLAQYQRYIGQDIVVHLRIPVLDRRKWQGKLEKIE 133 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + + + + F ++ A +I Sbjct: 134 NDMLTLTVDGQ--------EQVLVFGNIQKANII 159 >gi|70734335|ref|YP_257975.1| hypothetical protein PFL_0842 [Pseudomonas fluorescens Pf-5] gi|91208376|sp|Q4KIF8|RIMP_PSEF5 RecName: Full=Ribosome maturation factor rimP gi|68348634|gb|AAY96240.1| 15 kDa protein [Pseudomonas fluorescens Pf-5] Length = 158 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 78/154 (50%), Gaps = 10/154 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++ PV+ + + I + ++ LL+++++++ G + + DC +S+ IS +LD Sbjct: 12 EQLQALLAPVVVALGYECWGIEFSAQGRHSLLRVYIDKE-GGVLVDDCAIVSRQISGVLD 70 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I Y LEVSSPG++RP+ F ++ G V ++ ++ G + G Sbjct: 71 VEDPISVEYTLEVSSPGMERPLFTLEQFAKYVGEQVKIKLRSPFEGRRNFQGLLRGV--- 127 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +E+ +++ + + D + A +I + Sbjct: 128 -----EEQDVVVQVDDHEFLLPIDMIDKANIIPS 156 >gi|256847047|ref|ZP_05552493.1| conserved hypothetical protein [Lactobacillus coleohominis 101-4-CHN] gi|256715711|gb|EEU30686.1| conserved hypothetical protein [Lactobacillus coleohominis 101-4-CHN] Length = 159 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 73/158 (46%), Gaps = 8/158 (5%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISP 78 + ++ ++QP++++ F ++E + L++++++ G +TL DC +S +S Sbjct: 5 DVIKTVNELVQPILDQYDFYLFDTEFVKEGHSWYLRVYIDK-TGGITLEDCVNVSDQLSE 63 Query: 79 ILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 LD + I Y LEVSSPG +RP+ ++ D+ R G + + + K+ G + Sbjct: 64 ALDNCDPDPIPQAYFLEVSSPGAERPLKKEEDYHRAIGEYIHLSLYQALEGKKVYEGNLK 123 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + ++ + + I + ARL V Sbjct: 124 TVTADELTIDYLDKTRHK----TLTIPRKLVAKARLAV 157 >gi|325290364|ref|YP_004266545.1| Ribosome maturation factor rimP [Syntrophobotulus glycolicus DSM 8271] gi|324965765|gb|ADY56544.1| Ribosome maturation factor rimP [Syntrophobotulus glycolicus DSM 8271] Length = 152 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 78/153 (50%), Gaps = 10/153 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + +++P+ EE+ V + ++E + L++++++ DG + + DC +S +S I Sbjct: 5 VIQKVWQIVEPITEELKLELVDVEYVKEGAHWYLRVYIDK-DGGVDIDDCASVSHQLSNI 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD +N+I Y LEVSSPGI+RP+ ++ D+ ++ G +V + G + G Sbjct: 64 LDSKNLIPQAYMLEVSSPGIERPLSKREDYDKYIGKLVRVHTSEQFLGYTQFSGYLKGLL 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + LE E + + AI + + A L Sbjct: 124 DEKVILEYEGQ--------EAAIPINIVEKAHL 148 >gi|323495467|ref|ZP_08100542.1| ribosome maturation protein RimP [Vibrio sinaloensis DSM 21326] gi|323319464|gb|EGA72400.1| ribosome maturation protein RimP [Vibrio sinaloensis DSM 21326] Length = 140 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 36/146 (24%), Positives = 75/146 (51%), Gaps = 10/146 (6%) Query: 29 IQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 ++ + + V + + + L+IF++ ++G + + DC E+S+ +S ++DVE+ I Sbjct: 1 LEAPVAASGYELVGLEFIRAGEHSTLRIFIDHENG-INVEDCAEVSRQVSAVMDVEDPIT 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LEVSSPG++RP+ + + + ++ GH V+ + ++ G+++K G I + Sbjct: 60 VAYNLEVSSPGLERPLFKAAHYEQFIGHEVSIVLKMAVGNRRKWKGVIHSVDGETISVTV 119 Query: 148 EKRGEKDMNELQIAISFDSLLSARLI 173 E E + ++ A LI Sbjct: 120 EGSEE--------EFALSNISKANLI 137 >gi|227364836|ref|ZP_03848883.1| protein of hypothetical function DUF150 [Lactobacillus reuteri MM2-3] gi|325682538|ref|ZP_08162055.1| protein of hypothetical function DUF150 [Lactobacillus reuteri MM4-1A] gi|227070099|gb|EEI08475.1| protein of hypothetical function DUF150 [Lactobacillus reuteri MM2-3] gi|324978377|gb|EGC15327.1| protein of hypothetical function DUF150 [Lactobacillus reuteri MM4-1A] Length = 162 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 75/158 (47%), Gaps = 8/158 (5%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + ++ ++ P++++ F + ++E K+ L++++ + DG +TL DC +S +S Sbjct: 8 SVVETVTDLVTPILQDHDFYLYDLEFVKEGKSWYLRVYINK-DGGITLEDCALVSDELSE 66 Query: 79 ILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 LD + I Y LEVSSPG +RP+ ++ D+ R H + + ++ G + Sbjct: 67 ALDNVEPDPIPQAYFLEVSSPGAERPLKKEEDYQRAIDHYIHISLYQQINGQKVYEGTLT 126 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 S+ L+ + QI I + ARL + Sbjct: 127 QLSDKEITLDYLDKTRHR----QITIDRQKIAQARLAI 160 >gi|117919477|ref|YP_868669.1| hypothetical protein Shewana3_1028 [Shewanella sp. ANA-3] gi|166919124|sp|A0KTZ4|RIMP_SHESA RecName: Full=Ribosome maturation factor rimP gi|117611809|gb|ABK47263.1| protein of unknown function DUF150 [Shewanella sp. ANA-3] Length = 151 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 77/154 (50%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ +++ +E + F+ I ++ K+ +L++F++ ++G + + DC +S+ +S + Sbjct: 4 LESRLADMLKVPVEALGFQLWGIEYVQAGKHSILRVFIDGENG-INIEDCANVSRQVSAV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ + + G V ++ + + L G I Sbjct: 63 LDVEDPISTEYTLEVSSPGVDRPLFTAEQYAAYVGEDVKLQLTMPVAGSRNLKGAITQVD 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + ++ ++ D++ +I Sbjct: 123 GQMLSLNVNGK--------ELVVALDNIRKGNII 148 >gi|325265379|ref|ZP_08132103.1| hypothetical protein HMPREF0240_04394 [Clostridium sp. D5] gi|324029380|gb|EGB90671.1| hypothetical protein HMPREF0240_04394 [Clostridium sp. D5] Length = 155 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 73/142 (51%), Gaps = 2/142 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPIL 80 +++P++ + F V + ++E L+ ++++ G +T+ DCE +S+ S IL Sbjct: 8 EQQTEELLEPIVTGVGFELVDVEYVKEAGTWYLRAYIDKP-GGITVDDCEAVSRKFSDIL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D ++ IE Y EVSSPG+ RP+ ++ D+ R G V + + +++ +G + + Sbjct: 67 DEKDYIEDTYIFEVSSPGLGRPLKKEKDYRRSLGEEVEIKTYRAIDRQKEFVGILKDYDK 126 Query: 141 TGFFLEKEKRGEKDMNELQIAI 162 +E E + + +IA+ Sbjct: 127 DTVTIEYEDETTQVFEKSEIAL 148 >gi|310823423|ref|YP_003955781.1| hypothetical protein STAUR_6197 [Stigmatella aurantiaca DW4/3-1] gi|309396495|gb|ADO73954.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1] Length = 161 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 76/155 (49%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + ++++P++ + + + E+ +L++F+++ G + L +C ++S+A+ P Sbjct: 10 VEERAMTLLEPIVAGEGLELIDLEFVREREGWVLRLFIDKPGGRVGLDECSQVSRAVDPA 69 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD--KQKLIGKIMG 137 LDVE+++ Y LEVSSPG++RP+ + S + R G V + GD ++ G + Sbjct: 70 LDVEDLVPNEYNLEVSSPGVNRPLKKLSHYERVKGQKVKVKTFGPIGDPPRKNFSGTLTE 129 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + G +E E G I + A L Sbjct: 130 VTAEGIAVEVEGAGA-------FRIPLKDIAKANL 157 >gi|219870468|ref|YP_002474843.1| hypothetical protein HAPS_0200 [Haemophilus parasuis SH0165] gi|219690672|gb|ACL31895.1| conserved hypothetical protein [Haemophilus parasuis SH0165] Length = 135 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 72/139 (51%), Gaps = 10/139 (7%) Query: 36 MSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEV 94 M F V + L ++++++++ G +T+ DC ++S+ +S I DVE+ I Y LEV Sbjct: 1 MGFELVGVECQRAGRFLTVRLYIDKE-GGVTVDDCSDVSRQVSAIFDVEDPIADKYNLEV 59 Query: 95 SSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKD 154 SSPG+DRP+ + + R+ G + + + D++K G+++ L+ + + Sbjct: 60 SSPGLDRPLFTLAHYQRFVGREIVVHLRIPMLDRRKWQGELVSVEGDLITLKVDGNLQ-- 117 Query: 155 MNELQIAISFDSLLSARLI 173 A +F ++ A LI Sbjct: 118 ------AFAFGNIQKANLI 130 >gi|212212196|ref|YP_002303132.1| hypothetical protein CbuG_0575 [Coxiella burnetii CbuG_Q212] gi|226707750|sp|B6IZ59|RIMP_COXB2 RecName: Full=Ribosome maturation factor rimP gi|212010606|gb|ACJ17987.1| hypothetical cytosolic protein [Coxiella burnetii CbuG_Q212] Length = 153 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 45/160 (28%), Positives = 78/160 (48%), Gaps = 12/160 (7%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M A + +I P +E + F V +LQ+FV++ G + L +C ++S+ IS Sbjct: 1 MSQARTLHRLIAPAVEALGFELVGCELFRRGATTILQVFVDKP-GGIGLDECAKVSRQIS 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I G Y LEVSSPG++RP+ + + R+ G+ + +++ G I+ Sbjct: 60 AVLDVEDPIRGRYTLEVSSPGLERPLYTANHYRRFIGNKAKIRLREPREGQRQFRGMIVA 119 Query: 138 TS-ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 E L+ + + K +S + A L +TD Sbjct: 120 VDNEEQVTLQLDNKILK--------VSLGEIEKANL-ITD 150 >gi|154506275|ref|ZP_02043013.1| hypothetical protein RUMGNA_03817 [Ruminococcus gnavus ATCC 29149] gi|153793414|gb|EDN75834.1| hypothetical protein RUMGNA_03817 [Ruminococcus gnavus ATCC 29149] Length = 155 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 73/142 (51%), Gaps = 2/142 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 +++P++ E F V + ++E N L+ ++++ G +T+ DCE +S+ S IL Sbjct: 8 EKQTEELLEPIVAEQGFELVDVEYVKEAGNWYLRAYIDKP-GGITVDDCEVVSRRFSDIL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D ++ IE Y EVSSPG+ RP+ ++ DF+R G V + +++ +G + + Sbjct: 67 DEKDYIEDSYIFEVSSPGLGRPLKKEKDFIRSVGQEVEIRTYRAINRQKEFVGILKEFDQ 126 Query: 141 TGFFLEKEKRGEKDMNELQIAI 162 + E + + +IA+ Sbjct: 127 NTVTISYEDDSTQTFEKSEIAL 148 >gi|70726650|ref|YP_253564.1| hypothetical protein SH1649 [Staphylococcus haemolyticus JCSC1435] gi|82582359|sp|Q4L5W7|RIMP_STAHJ RecName: Full=Ribosome maturation factor rimP gi|68447374|dbj|BAE04958.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 155 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 79/155 (50%), Gaps = 6/155 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + ++ ++I P+++E++F V++ +E K+ L+I ++++ G + L DC S+ IS Sbjct: 4 ITEEVETIITPILDELNFELVEVEYTKEGKDHFLRISIDKE-GGVNLNDCTLASEKISEA 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +D + I Y L+V+SPG +RP+ ++ D+ V + ++ +G + Sbjct: 63 MDENDPIPDMYYLDVASPGAERPIKKEKDYHNAIDKPVFVSLYAPIEGDKEWLGILKAVD 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + +E +++ + QI I + + AR V Sbjct: 123 DDTITMEVKEKAKTK----QIEIPRNKIAKARHAV 153 >gi|326402395|ref|YP_004282476.1| hypothetical protein ACMV_02470 [Acidiphilium multivorum AIU301] gi|325049256|dbj|BAJ79594.1| hypothetical protein ACMV_02470 [Acidiphilium multivorum AIU301] Length = 174 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 96/166 (57%), Gaps = 9/166 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDG-NMTLRDCEELSQAIS 77 GL G I+ +I P +E + + V+++++ ++ +QI +R D ++L DCE +S +S Sbjct: 9 TGLEGRIAELIAPGLESIGYELVRVAIMGKQTPTVQIMADRADQTPLSLDDCERISHLVS 68 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS-SGDKQKLIGKIM 136 +LDV++ I + LEVSS GIDRP+ R D+ R+ GH+ ++ + + +++L G ++ Sbjct: 69 AVLDVDDPISSAWTLEVSSAGIDRPLTRVKDWNRYAGHLARIDLDVPTASGRKRLTGTVL 128 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS 182 G E ++ + + + + + A+L++T+EL++A+ Sbjct: 129 GADEAQARVKLD-------SGETVDLPHAHIRRAKLVLTEELIKAT 167 >gi|152995056|ref|YP_001339891.1| hypothetical protein Mmwyl1_1025 [Marinomonas sp. MWYL1] gi|189038545|sp|A6VU27|RIMP_MARMS RecName: Full=Ribosome maturation factor rimP gi|150835980|gb|ABR69956.1| protein of unknown function DUF150 [Marinomonas sp. MWYL1] Length = 153 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 80/151 (52%), Gaps = 10/151 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERD-DGNMTLRDCEELSQAISPILDV 82 + +I+PV+E + F + L K+ +L+I++E D + + + DC +S+ +S ILDV Sbjct: 8 LEELIRPVVEGLGFEFWGMEYLSLGKDSVLRIYIETDAEKGIDVEDCARVSRQVSSILDV 67 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ I G Y LEVSSPG+DRP+ + + + G +V+ + + ++K G++MG Sbjct: 68 EDPITGEYNLEVSSPGLDRPLFSLAQYQAYIGSIVSLRLRVPFDGRRKFKGQLMGIESED 127 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + ++ + + D + A ++ Sbjct: 128 IVIRVDQE--------EYLLPIDLIDKANVV 150 >gi|77165587|ref|YP_344112.1| hypothetical protein Noc_2122 [Nitrosococcus oceani ATCC 19707] gi|254434762|ref|ZP_05048270.1| conserved hypothetical protein [Nitrosococcus oceani AFC27] gi|91208399|sp|Q3J9B4|RIMP_NITOC RecName: Full=Ribosome maturation factor rimP gi|76883901|gb|ABA58582.1| Protein of unknown function DUF150 [Nitrosococcus oceani ATCC 19707] gi|207091095|gb|EDZ68366.1| conserved hypothetical protein [Nitrosococcus oceani AFC27] Length = 151 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 74/152 (48%), Gaps = 11/152 (7%) Query: 24 DISSVIQPVIEEMSFRSVQISLLE--EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 IS +++PV+ + + V + L K LL+I+++ G +T+ DCE S IS +LD Sbjct: 6 RISELVEPVVAALGYELVGVERLSSVGKGALLRIYIDTPSG-ITIDDCERASHQISALLD 64 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE ++ Y LE+SSPG++RP+ + F R+ G + + +++ G + G Sbjct: 65 VEELMASAYTLEISSPGLNRPLFTEEHFKRFTGVEASITLSKPLNGRREFKGLLRGIRGD 124 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + + + + ARL+ Sbjct: 125 RVVI--------LVAGEEFELPLEGIKKARLV 148 >gi|30995436|ref|NP_439434.2| hypothetical protein HI1282 [Haemophilus influenzae Rd KW20] gi|145633249|ref|ZP_01788980.1| hypothetical protein CGSHi3655_03431 [Haemophilus influenzae 3655] gi|145634373|ref|ZP_01790083.1| hypothetical protein CGSHiAA_06269 [Haemophilus influenzae PittAA] gi|148827022|ref|YP_001291775.1| hypothetical protein CGSHiGG_01570 [Haemophilus influenzae PittGG] gi|229845093|ref|ZP_04465228.1| hypothetical protein CGSHi6P18H1_00035 [Haemophilus influenzae 6P18H1] gi|260581404|ref|ZP_05849218.1| conserved hypothetical protein [Haemophilus influenzae RdAW] gi|260582502|ref|ZP_05850293.1| conserved hypothetical protein [Haemophilus influenzae NT127] gi|329123361|ref|ZP_08251926.1| YhbC family protein [Haemophilus aegyptius ATCC 11116] gi|34223728|sp|P45138|RIMP_HAEIN RecName: Full=Ribosome maturation factor rimP gi|166979796|sp|A5UF36|RIMP_HAEIG RecName: Full=Ribosome maturation factor rimP gi|144986095|gb|EDJ92685.1| hypothetical protein CGSHi3655_03431 [Haemophilus influenzae 3655] gi|145268353|gb|EDK08347.1| hypothetical protein CGSHiAA_06269 [Haemophilus influenzae PittAA] gi|148718264|gb|ABQ99391.1| hypothetical protein CGSHiGG_01570 [Haemophilus influenzae PittGG] gi|229811929|gb|EEP47623.1| hypothetical protein CGSHi6P18H1_00035 [Haemophilus influenzae 6P18H1] gi|260091946|gb|EEW75895.1| conserved hypothetical protein [Haemophilus influenzae RdAW] gi|260094482|gb|EEW78379.1| conserved hypothetical protein [Haemophilus influenzae NT127] gi|327471361|gb|EGF16813.1| YhbC family protein [Haemophilus aegyptius ATCC 11116] Length = 151 Score = 167 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 79/154 (51%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ ++Q +E++ I + +++F+++ DG +T+ DC ++S+ +S I Sbjct: 4 LEQNLQEMLQDAVEDLGCELWGIECQRVGRFMTVRLFIDK-DGGVTVDDCADVSRQVSAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ F R+ G +A + + +++K GK+ Sbjct: 63 LDVEDPIADKYNLEVSSPGLDRPLFTLPQFERYIGQDIAVHLRIPVMERRKWQGKLERIE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + L + + + + F ++ A ++ Sbjct: 123 KDMITLIVDDQEQI--------LVFGNIQKANVV 148 >gi|325661696|ref|ZP_08150319.1| ribosome maturation factor rimP [Lachnospiraceae bacterium 4_1_37FAA] gi|325471949|gb|EGC75164.1| ribosome maturation factor rimP [Lachnospiraceae bacterium 4_1_37FAA] Length = 174 Score = 167 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 41/142 (28%), Positives = 70/142 (49%), Gaps = 2/142 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 +I P++E F V + ++E N L+ ++++ G + + DCE +S+A S IL Sbjct: 27 EQKTEELILPIVEGNGFELVDVEYVKEGSNWYLRAYIDKP-GGIAVDDCEVVSRAFSEIL 85 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D E+ IE Y EVSSPG+ RP+ ++ DF R G V + +++ G + + Sbjct: 86 DREDYIEDTYIFEVSSPGLGRPLKKEKDFKRSLGEEVEIRTYRAIDRQKEFTGILKSYDK 145 Query: 141 TGFFLEKEKRGEKDMNELQIAI 162 +E E K +IA+ Sbjct: 146 DTVTIEYEDGEPKTFERSEIAL 167 >gi|301063518|ref|ZP_07204050.1| conserved hypothetical protein [delta proteobacterium NaphS2] gi|300442457|gb|EFK06690.1| conserved hypothetical protein [delta proteobacterium NaphS2] Length = 157 Score = 167 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 78/154 (50%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 L +I ++++PV++EM V + + + +L+I+ +R G +TL DC +S+ I + Sbjct: 5 LLKEIEALVEPVLDEMGIELVDLEYVSGQGRQVLRIYADRPTG-ITLDDCAMVSREIGHL 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV ++++ Y LEVSSPG++RP+ R+ DFLR G + + ++ G + Sbjct: 64 LDVSDLLKHQYVLEVSSPGLNRPLKREKDFLRVVGQRIKVQTTAPLKGRRNFSGVLQSVQ 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 ++ + + I S+ A L+ Sbjct: 124 NGMLEIDLDG--------AVVQIPEQSIRKANLV 149 >gi|27467859|ref|NP_764496.1| hypothetical protein SE0941 [Staphylococcus epidermidis ATCC 12228] gi|57866747|ref|YP_188414.1| hypothetical protein SERP0832 [Staphylococcus epidermidis RP62A] gi|251810696|ref|ZP_04825169.1| protein of hypothetical function DUF150 [Staphylococcus epidermidis BCM-HMP0060] gi|282876303|ref|ZP_06285170.1| conserved hypothetical protein [Staphylococcus epidermidis SK135] gi|293366771|ref|ZP_06613447.1| conserved hypothetical protein [Staphylococcus epidermidis M23864:W2(grey)] gi|34222847|sp|Q8CST6|RIMP_STAES RecName: Full=Ribosome maturation factor rimP gi|81674897|sp|Q5HPS6|RIMP_STAEQ RecName: Full=Ribosome maturation factor rimP gi|27315404|gb|AAO04538.1|AE016747_35 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|57637405|gb|AAW54193.1| conserved hypothetical protein [Staphylococcus epidermidis RP62A] gi|251805856|gb|EES58513.1| protein of hypothetical function DUF150 [Staphylococcus epidermidis BCM-HMP0060] gi|281295328|gb|EFA87855.1| conserved hypothetical protein [Staphylococcus epidermidis SK135] gi|291319072|gb|EFE59442.1| conserved hypothetical protein [Staphylococcus epidermidis M23864:W2(grey)] gi|329736648|gb|EGG72914.1| hypothetical protein SEVCU045_1081 [Staphylococcus epidermidis VCU045] Length = 155 Score = 167 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 80/155 (51%), Gaps = 6/155 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + ++IQPV+ +++F V I ++E K+ L+I ++++ G + L DC S+ IS + Sbjct: 4 ITEQVEALIQPVLNDLNFELVDIEYVKEGKDHFLRISIDKE-GGVDLNDCTIASEKISEV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +D + I Y L+V+SPG +RP+ ++ DF + + ++ +G + + Sbjct: 63 MDENDPIPEMYYLDVASPGAERPIKKEKDFYNAINQPIFVSLYAPIEGDKEWLGVLKSVN 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + +E +++ + +I I + + AR V Sbjct: 123 DESINMEVKEKAKTK----EIEIPRNKIAKARHAV 153 >gi|114800120|ref|YP_758845.1| hypothetical protein HNE_0111 [Hyphomonas neptunium ATCC 15444] gi|123129251|sp|Q0C5Z8|RIMP_HYPNA RecName: Full=Ribosome maturation factor rimP gi|114740294|gb|ABI78419.1| conserved hypothetical protein [Hyphomonas neptunium ATCC 15444] Length = 199 Score = 167 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 52/162 (32%), Positives = 81/162 (50%), Gaps = 8/162 (4%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDG-NMTLRDCEELSQAISPIL 80 + S++QPV E + V++ + + LQI ER G + DC LS+ +SP+L Sbjct: 8 ERRLLSLVQPVAEGLGMEIVRLRVQGGRRPHLQIMAERAGGAPTGIEDCARLSRGMSPVL 67 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + + I Y LEVS+PGIDRP+ R DF RW GH V E+ +++ G I G Sbjct: 68 EAADPISEAYTLEVSTPGIDRPLTRPGDFARWIGHAVRIELARPIDGRRRFTGTITGEDN 127 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS 182 G +E + + + + A L++TDEL+ A+ Sbjct: 128 DGAHIELDDETKLVAAVHE-------MSRASLVLTDELIEAA 162 >gi|242242548|ref|ZP_04796993.1| protein of hypothetical function DUF150 [Staphylococcus epidermidis W23144] gi|242233975|gb|EES36287.1| protein of hypothetical function DUF150 [Staphylococcus epidermidis W23144] gi|319401445|gb|EFV89655.1| conserved hypothetical protein [Staphylococcus epidermidis FRI909] Length = 155 Score = 167 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 79/155 (50%), Gaps = 6/155 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + ++IQPV+ ++ F V I ++E K+ L+I ++++ G + L DC S+ IS + Sbjct: 4 ITEQVEALIQPVLNDLDFELVDIEYVKEGKDHFLRISIDKE-GGVDLNDCTLASEKISEV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +D + I Y L+V+SPG +RP+ ++ DF + + ++ +G + + Sbjct: 63 MDENDPIPEMYYLDVASPGAERPIKKEKDFYNAINQPIFVSLYAPIEGDKEWLGILKSVN 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + +E +++ + +I I + + AR V Sbjct: 123 DESINMEVKEKAKTK----EIEIPRNKIAKARHAV 153 >gi|121998530|ref|YP_001003317.1| hypothetical protein Hhal_1751 [Halorhodospira halophila SL1] gi|166980218|sp|A1WXV3|RIMP_HALHL RecName: Full=Ribosome maturation factor rimP gi|121589935|gb|ABM62515.1| protein of unknown function DUF150 [Halorhodospira halophila SL1] Length = 151 Score = 167 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 43/155 (27%), Positives = 86/155 (55%), Gaps = 9/155 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 M + S+++P + + + V + L K N L+++++ G + L DCE +S +S Sbjct: 1 MSQIQTLHSLLEPTVTGLGYELVGVELTGAKGNRTLRVYIDTPAG-IRLEDCEAVSHQVS 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ IEG Y LEVSSPG+DRP+ + +D+ R++G + ++ ++++ G ++G Sbjct: 60 GLLDVEDPIEGAYNLEVSSPGLDRPIFKSADYDRFSGERIKLRLLELYEGRRRVKGVLLG 119 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + +D++ +++ I + + ARL Sbjct: 120 LDGEFVRV-------RDVDGVELRIPLELIDRARL 147 >gi|331084711|ref|ZP_08333799.1| ribosome maturation factor rimP [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410805|gb|EGG90227.1| ribosome maturation factor rimP [Lachnospiraceae bacterium 9_1_43BFAA] Length = 155 Score = 167 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 41/142 (28%), Positives = 70/142 (49%), Gaps = 2/142 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 +I P++E F V + ++E N L+ ++++ G + + DCE +S+A S IL Sbjct: 8 EQKTEELILPIVEGNGFELVDVEYVKEGSNWYLRAYIDKP-GGIAVDDCEVVSRAFSEIL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D E+ IE Y EVSSPG+ RP+ ++ DF R G V + +++ G + + Sbjct: 67 DREDYIEDTYIFEVSSPGLGRPLKKEKDFKRSLGEEVEIRTYRAIDRQKEFTGILKSYDK 126 Query: 141 TGFFLEKEKRGEKDMNELQIAI 162 +E E K +IA+ Sbjct: 127 DTVTIEYEDGEPKTFERSEIAL 148 >gi|91208372|sp|Q3KI86|RIMP_PSEPF RecName: Full=Ribosome maturation factor rimP Length = 158 Score = 167 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 77/154 (50%), Gaps = 10/154 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 ++ +++ PV+ + + I + ++ +L+++++++ G + + DC +S+ IS +LD Sbjct: 12 EELQALLAPVVVALGYECWGIEFSAQGRHSMLRVYIDKE-GGVLVDDCAIVSRQISGVLD 70 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I Y LEVSSPG++RP+ F ++ G V ++ ++ G + G Sbjct: 71 VEDPISVEYTLEVSSPGMERPLFTLEQFAKYVGEQVKIKLRSPFEGRRNFQGLLRGV--- 127 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +E+ + + + D + A +I + Sbjct: 128 -----EEQDVVVQVENHEFLLPIDMIDKANIIPS 156 >gi|327441014|dbj|BAK17379.1| uncharacterized protein [Solibacillus silvestris StLB046] Length = 161 Score = 167 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 39/151 (25%), Positives = 79/151 (52%), Gaps = 5/151 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I ++ P++EE+ V I ++E ++ L+I+V+ +G + + C ++S+ +S LD Sbjct: 8 IEELVTPIVEELDLELVDIEFVKEGRDWFLRIYVDTPEGGIDILQCAQVSERLSEKLDEN 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + IE +Y LEVSSPG +RP+ ++ DF + G + + D ++ G + ++ Sbjct: 68 DPIEQNYYLEVSSPGAERPLKKQQDFEKAIGKYIYVKTYEPVKDLKEFYGYLRAYTDEFL 127 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + K + + I + + ARL + Sbjct: 128 EMEFRIKTRK----VTVQIEKEKIAQARLAI 154 >gi|15614980|ref|NP_243283.1| hypothetical protein BH2417 [Bacillus halodurans C-125] gi|34223162|sp|Q9KA73|RIMP_BACHD RecName: Full=Ribosome maturation factor rimP gi|10175037|dbj|BAB06136.1| BH2417 [Bacillus halodurans C-125] Length = 156 Score = 167 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 42/150 (28%), Positives = 78/150 (52%), Gaps = 6/150 (4%) Query: 26 SSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + +++P++E++ + +E K+ L++F++ + G + L DC ++S+ +S LD + Sbjct: 10 AELVKPILEQLDLELYDVEFKKEGKDWFLRVFIDSETG-VDLEDCGKVSERLSEKLDETD 68 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 IE Y LEVSSPG +RP+ R+ D LR G V + ++ L G++ Sbjct: 69 PIEQAYFLEVSSPGAERPLKREKDLLRSIGKNVHVTLYEPIDGEKALEGELTEFDGETLT 128 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + + K + I + + SARL V Sbjct: 129 IEIKIKTRKK----TVTIPYAKVASARLAV 154 >gi|226946309|ref|YP_002801382.1| hypothetical protein Avin_42840 [Azotobacter vinelandii DJ] gi|259585700|sp|C1DFL1|RIMP_AZOVD RecName: Full=Ribosome maturation factor rimP gi|226721236|gb|ACO80407.1| Conserved hypothetical protein [Azotobacter vinelandii DJ] Length = 145 Score = 167 bits (425), Expect = 6e-40, Method: Composition-based stats. Identities = 40/150 (26%), Positives = 79/150 (52%), Gaps = 10/150 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +++ PV+E + + I L + ++ LL+++++ DG + + DCE++S+ IS +LDVE Sbjct: 1 MQALLAPVVEALGYECWGIEFLSQGRHSLLRVYIDHADG-ILIDDCEKVSRQISGVLDVE 59 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I Y LEVSSPG+DRP+ F+R G V + ++ G + G Sbjct: 60 DPISSEYTLEVSSPGMDRPLFTLEQFVRCAGEQVKIRLRSPFEGRRNFQGLLRGV----- 114 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLI 173 +++ +++ + + D + A +I Sbjct: 115 ---EDQDVVVLVDDHEYLLPIDLIDKANII 141 >gi|197303043|ref|ZP_03168091.1| hypothetical protein RUMLAC_01770 [Ruminococcus lactaris ATCC 29176] gi|197297898|gb|EDY32450.1| hypothetical protein RUMLAC_01770 [Ruminococcus lactaris ATCC 29176] Length = 155 Score = 167 bits (425), Expect = 6e-40, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 72/142 (50%), Gaps = 2/142 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++++P++ E+ F V + ++E L+ ++++ G + + DCE +S+ S IL Sbjct: 8 EQQTETLLEPIVTELGFELVDVEYVKEGGTWYLRAYIDKP-GGIAVDDCEAVSRRFSDIL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D ++ I Y EVSSPG+ RP+ ++ DF R G V + +++ +G + + Sbjct: 67 DEKDYIADSYVFEVSSPGLGRPLKKEKDFKRSLGEEVEIRTYRAIDRQKEFVGLLKAYDD 126 Query: 141 TGFFLEKEKRGEKDMNELQIAI 162 + + E E+ + IA+ Sbjct: 127 STVTITYEDDTEQTFDRGDIAL 148 >gi|95929629|ref|ZP_01312371.1| protein of unknown function DUF150 [Desulfuromonas acetoxidans DSM 684] gi|95134326|gb|EAT15983.1| protein of unknown function DUF150 [Desulfuromonas acetoxidans DSM 684] Length = 187 Score = 167 bits (425), Expect = 6e-40, Method: Composition-based stats. Identities = 55/189 (29%), Positives = 98/189 (51%), Gaps = 23/189 (12%) Query: 1 MESTHFLHS-KYEPRIFGDMG---------LAGDISSVIQPVIEEMSFRSVQISLLEEKN 50 M S F H + P +F + G + + + +P++EE V I + + Sbjct: 1 MRSELFAHFFLFYPFLFKEQGRCNDMSDEAVLNKVIELAEPILEEQGLELVDIEFFSQGS 60 Query: 51 -LLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDF 109 LL++F+++ G + L DC + S+ +S ILDVE +IE YRLEVSSPGIDRP+ +++DF Sbjct: 61 EWLLRLFIDKP-GGVNLDDCADCSRELSLILDVEEVIEVAYRLEVSSPGIDRPLKKEADF 119 Query: 110 LRWNGHVVACEIVLSSG------DKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAIS 163 R+ G +V + + + ++ IG+++G + F+E+ + ++ + Sbjct: 120 ERFKGEMVRAKTLQAIDPDLRGYQRKTFIGELLGLEDDVVFIEQNDK-----EGGRVELP 174 Query: 164 FDSLLSARL 172 DSL + L Sbjct: 175 LDSLETINL 183 >gi|167465393|ref|ZP_02330482.1| hypothetical protein Plarl_23005 [Paenibacillus larvae subsp. larvae BRL-230010] Length = 140 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 36/143 (25%), Positives = 70/143 (48%), Gaps = 9/143 (6%) Query: 33 IEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYR 91 + E F V I ++E N L+++V++ +G + + DC +S+ +S LD ++ I Y Sbjct: 4 LTENGFELVDIEYVKEGSNWFLRVYVDKLEGGIDIEDCGRISEYLSAKLDEKDPIPTAYF 63 Query: 92 LEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRG 151 LEVSSPG +RP+ + D + G V + ++ G+++ ++ K+ Sbjct: 64 LEVSSPGAERPLKKPQDIAKSVGKHVFITTYEPVDNAKEFEGELLSFDGETLVVKTAKKK 123 Query: 152 EKDMNELQIAISFDSLLSARLIV 174 +I ++ + SARL + Sbjct: 124 S--------SIPYEKVASARLAI 138 >gi|330504829|ref|YP_004381698.1| hypothetical protein MDS_3915 [Pseudomonas mendocina NK-01] gi|328919115|gb|AEB59946.1| hypothetical protein MDS_3915 [Pseudomonas mendocina NK-01] Length = 152 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 40/152 (26%), Positives = 79/152 (51%), Gaps = 10/152 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++ PVIE + ++ I L + ++ LL++++++ DG + + DCE +S+ +S +LD Sbjct: 6 EQLQALLAPVIEALGYQCWGIEFLSQGRHSLLRVYIDKADG-ILIDDCEIVSRQLSGVLD 64 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I Y LEVSSPG+DRP+ F G V ++ ++ G + G Sbjct: 65 VEDPISSEYTLEVSSPGMDRPLFTLEQFAAHVGEQVKIKLRSPFDGRRNFQGLLRGV--- 121 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 +E+ +++ + + D + A +I Sbjct: 122 -----EEQDVVVQVDDHEYLLPIDLIDKANII 148 >gi|268686951|ref|ZP_06153813.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|268627235|gb|EEZ59635.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] Length = 149 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 79/153 (51%), Gaps = 13/153 (8%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 G + DI ++++ + + + V L + L++F++++ G +T+ DC +S +S + Sbjct: 4 GSSMDIQTILEKTLPGLGYELVDFELTAQG--TLRVFIDKE-GGITVEDCATVSNHLSRV 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 VE+I G+ LE+SSPG+DRP+ + +DF+R+ G + L G ++ IGKI G Sbjct: 61 FMVEDI--GYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIGGQKNFIGKIEGCE 118 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + + I ++ ARL Sbjct: 119 NDTVTVSFDGK--------TVQIELGNIDKARL 143 >gi|225572727|ref|ZP_03781482.1| hypothetical protein RUMHYD_00916 [Blautia hydrogenotrophica DSM 10507] gi|225039900|gb|EEG50146.1| hypothetical protein RUMHYD_00916 [Blautia hydrogenotrophica DSM 10507] Length = 155 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 75/142 (52%), Gaps = 2/142 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 +I P++E F V + ++E N L+++++++ G +T+ DCE +S+A S +L Sbjct: 8 EQRAEEMILPLVEAQRFELVDVEYVKEAGNWYLRVYIDKE-GGITVDDCELISRAFSDLL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D + IE Y LEVSSPG+ RP+ ++ D+ R G + +++ G ++ Sbjct: 67 DEADFIEDSYILEVSSPGLGRPLKKEKDYARSMGKELEIRTYRPIDKQKEFYGILLAYDN 126 Query: 141 TGFFLEKEKRGEKDMNELQIAI 162 +E++ + + + +IA+ Sbjct: 127 NSVTIEEQDKTRRTFEKKEIAL 148 >gi|289548940|ref|YP_003473928.1| hypothetical protein Thal_1169 [Thermocrinis albus DSM 14484] gi|289182557|gb|ADC89801.1| protein of unknown function DUF150 [Thermocrinis albus DSM 14484] Length = 157 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 83/157 (52%), Gaps = 7/157 (4%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 + + + ++ P++++M +R + E+ +L+I ++++ G +T+ DCEE+S+ Sbjct: 3 INEKAIVERVKELVTPLVKKMGYRLFDVEFKPERGWVLRIILDKE-GGITIGDCEEVSRK 61 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+II Y LEVSSPG++R + + F + G +V + ++++ G I Sbjct: 62 VSALLDVEDIIPFSYMLEVSSPGLNRELTKPEHFEFFEGRLVRVILRQPVEGRREIKGYI 121 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G +E LE++ + + + + A L Sbjct: 122 RGVTEGVLKLEEKD------SRNILHVPLSHVARANL 152 >gi|225570593|ref|ZP_03779618.1| hypothetical protein CLOHYLEM_06695 [Clostridium hylemonae DSM 15053] gi|225160606|gb|EEG73225.1| hypothetical protein CLOHYLEM_06695 [Clostridium hylemonae DSM 15053] Length = 155 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 73/142 (51%), Gaps = 2/142 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++ P++EE F V + ++E + L+ ++++ G + + DCE++S+ +S IL Sbjct: 8 EQKTEEILLPIVEEYGFELVDVEYVKEGSTWYLRAYIDKP-GGINIDDCEKVSRRLSDIL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D ++ I+ Y +EVSSPG+ RP+ ++ DF R G V +++ G + + Sbjct: 67 DEKDYIDDAYIMEVSSPGLGRPLKKEKDFKRSLGEEVEIRTYRMMDKQKEFFGILKEYDD 126 Query: 141 TGFFLEKEKRGEKDMNELQIAI 162 + + +E K + IA+ Sbjct: 127 STVTIMQEDETLKTFAKSDIAL 148 >gi|20807844|ref|NP_623015.1| hypothetical protein TTE1397 [Thermoanaerobacter tengcongensis MB4] gi|34222922|sp|Q8RA33|RIMP_THETN RecName: Full=Ribosome maturation factor rimP gi|20516406|gb|AAM24619.1| conserved hypothetical protein [Thermoanaerobacter tengcongensis MB4] Length = 151 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 40/137 (29%), Positives = 74/137 (54%), Gaps = 3/137 (2%) Query: 19 MGLAGDIS-SVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAI 76 M +I+ ++ P++EE +F V + +E K+ L+++++++ G +TL DC+ +S+ + Sbjct: 1 MSRIEEITKELVMPILEENNFELVDVEYKKEGKHWYLRVYIDKE-GGITLDDCQLVSEYL 59 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 S LD + I+ Y LEVSSPG+DRP+ DF R G V + ++K G+++ Sbjct: 60 SDRLDEVDPIDHSYILEVSSPGLDRPLKTPRDFKRNLGKEVEVSLYQPIDKRKKFTGELL 119 Query: 137 GTSETGFFLEKEKRGEK 153 + L E + Sbjct: 120 EFTGDKIILLCEGEKRE 136 >gi|331090929|ref|ZP_08339771.1| ribosome maturation factor rimP [Lachnospiraceae bacterium 2_1_46FAA] gi|330405151|gb|EGG84687.1| ribosome maturation factor rimP [Lachnospiraceae bacterium 2_1_46FAA] Length = 155 Score = 167 bits (424), Expect = 7e-40, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 72/142 (50%), Gaps = 2/142 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++ P++EE F V + ++E L+ ++++ G + + DCE +S+A S IL Sbjct: 8 EQKTEELLLPIVEEHGFELVDVEYVKEGGTWYLRAYIDKP-GGIAVDDCEVVSRAFSDIL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D ++ IE Y EVSSPG+ RP+ ++ DF R G V + +++ +G + G + Sbjct: 67 DEKDYIEDTYIFEVSSPGLGRPLKKEKDFARSMGEEVEVRTYRAIDRQKEFVGILKGYDK 126 Query: 141 TGFFLEKEKRGEKDMNELQIAI 162 +E E E+ IA+ Sbjct: 127 NTVTIEMEDGSERIFERNDIAL 148 >gi|24372785|ref|NP_716827.1| hypothetical protein SO_1202 [Shewanella oneidensis MR-1] gi|34222878|sp|Q8EHL7|RIMP_SHEON RecName: Full=Ribosome maturation factor rimP gi|24346870|gb|AAN54272.1|AE015564_3 conserved hypothetical protein [Shewanella oneidensis MR-1] Length = 151 Score = 167 bits (424), Expect = 7e-40, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 77/154 (50%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ +++ +E + F+ I ++ K+ +L++F++ ++G + + DC +S+ +S + Sbjct: 4 LESRLADMLKVPVEALGFQLWGIEYVQAGKHSILRVFIDGENG-INIEDCANVSRQVSAV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ + + G V ++ + + L G I Sbjct: 63 LDVEDPISTEYTLEVSSPGVDRPLFTAEQYAAYVGEDVKLQLTMPVAGSRNLKGAITQVD 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + ++ ++ D++ +I Sbjct: 123 GQMLSVNVNGK--------ELVVALDNIRKGNII 148 >gi|113969368|ref|YP_733161.1| hypothetical protein Shewmr4_1024 [Shewanella sp. MR-4] gi|114046595|ref|YP_737145.1| hypothetical protein Shewmr7_1089 [Shewanella sp. MR-7] gi|123029878|sp|Q0HLG3|RIMP_SHESM RecName: Full=Ribosome maturation factor rimP gi|123030836|sp|Q0HXR7|RIMP_SHESR RecName: Full=Ribosome maturation factor rimP gi|113884052|gb|ABI38104.1| protein of unknown function DUF150 [Shewanella sp. MR-4] gi|113888037|gb|ABI42088.1| protein of unknown function DUF150 [Shewanella sp. MR-7] Length = 151 Score = 167 bits (424), Expect = 7e-40, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 75/154 (48%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + ++ +E + F+ I ++ K+ +L++F++ ++G + + DC +S+ +S + Sbjct: 4 LESRLVDMLTVPVEALGFQLWGIEYVQAGKHSILRVFIDGENG-INIEDCANVSRQVSAV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ + + G V ++ + + L G I Sbjct: 63 LDVEDPISTEYTLEVSSPGVDRPLFTAEQYAAYVGEDVKLQLTMPVAGSRNLKGAITQVD 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + ++ ++ D++ +I Sbjct: 123 GQMLSLNVNGK--------ELVVALDNIRKGNII 148 >gi|329724310|gb|EGG60822.1| hypothetical protein SEVCU144_1771 [Staphylococcus epidermidis VCU144] Length = 155 Score = 167 bits (424), Expect = 7e-40, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 79/155 (50%), Gaps = 6/155 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + ++IQPV+ +++F V I ++E K+ L+I ++++ G + L DC S+ IS + Sbjct: 4 ITEQVEALIQPVLNDLNFELVDIEYVKEGKDHFLRISIDKE-GGVDLNDCTIASEKISEV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +D + I Y L+V+SPG +RP+ + DF + + ++ +G + + Sbjct: 63 MDKNDPIPEMYYLDVASPGAERPIKKDKDFYNAINQPIFVSLYAPIEGDKEWLGVLKSVN 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + +E +++ + +I I + + AR V Sbjct: 123 DESINMEVKEKAKTK----EIEIPRNKIAKARHAV 153 >gi|294624664|ref|ZP_06703334.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666763|ref|ZP_06731997.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292601020|gb|EFF45087.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603424|gb|EFF46841.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 196 Score = 167 bits (424), Expect = 7e-40, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 78/158 (49%), Gaps = 12/158 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVE-----RDDGNMTLRDCEELSQA 75 A +I++++ P +E + + + L L+++++ + + + + DCE +S+ Sbjct: 5 ATEIANLLSPTVESLGLELLGVEYLPAPGGATLRLYIDVPLAEQPERVINVDDCERVSRE 64 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LDVE+ I G+Y LEVSSPG+DRP+ F R G + L+ +++ G+I Sbjct: 65 VSAQLDVEDPISGNYTLEVSSPGVDRPLFTLEQFARHTGESAKIVLKLAQDGRRRFQGEI 124 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + ++ + I +D++ AR++ Sbjct: 125 LRIDAEA------DAVVFAVDGKDVQIGYDNIDKARIV 156 >gi|15602626|ref|NP_245698.1| hypothetical protein PM0761 [Pasteurella multocida subsp. multocida str. Pm70] gi|12721059|gb|AAK02845.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 177 Score = 167 bits (424), Expect = 7e-40, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 74/154 (48%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 L + ++Q +E++ I ++++++++ G +T+ DC ++S+ +S I Sbjct: 30 LEQKLQELLQSSVEDLGCELWGIECQRAGRYLTVRLYIDKE-GGVTVEDCADVSRQVSAI 88 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DR + + R+ G + + + D++K GK+ Sbjct: 89 LDVEDPIADKYNLEVSSPGLDRALFTLDQYQRYIGQEIVVHLRIPVLDRRKWQGKLEKIE 148 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + + + + F ++ A +I Sbjct: 149 NDMLTLIVDGQEQI--------LVFGNIQKANII 174 >gi|226313024|ref|YP_002772918.1| hypothetical protein BBR47_34370 [Brevibacillus brevis NBRC 100599] gi|254801675|sp|C0ZF55|RIMP_BREBN RecName: Full=Ribosome maturation factor rimP gi|226095972|dbj|BAH44414.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 152 Score = 167 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 76/155 (49%), Gaps = 9/155 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + G ++ +I P++EE+ V I +E N L++F++ + GN+ + DC +S+ +S Sbjct: 4 VTGIVTELITPIVEEVGLELVDIEYKKEGSNWFLRVFIDNETGNIDIDDCRLVSEKLSEK 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + I Y LEVSSPG +RP+ + DF + G V G+++ Sbjct: 64 LDEVDPIPTAYFLEVSSPGAERPLRKDKDFTKAVGRNVHITTKEPIEGATTFEGELVSYE 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + +++ K+ IS + + +AR+ + Sbjct: 124 DGKLTVKEAKK--------TYVISQEQIDTARMAI 150 >gi|295396944|ref|ZP_06807066.1| protein of hypothetical function DUF150 [Aerococcus viridans ATCC 11563] gi|294974797|gb|EFG50502.1| protein of hypothetical function DUF150 [Aerococcus viridans ATCC 11563] Length = 179 Score = 167 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 45/178 (25%), Positives = 88/178 (49%), Gaps = 10/178 (5%) Query: 3 STHFLH-SKYEPR-IFGDMG-LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVE 58 HF H +K + R G+M + + ++QP+IE++ F I ++E K+ L+I+V+ Sbjct: 4 DAHFFHGNKVKIRKARGNMAKVTDQMQEIVQPIIEDLGFILFDIEFVKEGKSWFLRIYVD 63 Query: 59 RDDGNMTLRDCEELSQAISPILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHV 116 + G + + DC +S+ IS +D + I Y LEVSSPG +RP+ D G Sbjct: 64 KPGGGIAIEDCVTVSEHISEAVDQLETDPIPQAYYLEVSSPGAERPLKNDDDVQAAIGEW 123 Query: 117 VACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 V + ++ + G+++ S+ + +E + + K + + + ++ RL + Sbjct: 124 VFLSFYQAIDGQKNIQGRLLSVSDDAYEVETKDKTRK----VAVTVEKSNVSLIRLAI 177 >gi|229013000|ref|ZP_04170165.1| hypothetical protein bmyco0001_34380 [Bacillus mycoides DSM 2048] gi|228748254|gb|EEL98114.1| hypothetical protein bmyco0001_34380 [Bacillus mycoides DSM 2048] Length = 173 Score = 167 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 84/168 (50%), Gaps = 11/168 (6%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEEL 72 R+F D + + + QP++EE++ V + ++E + L++F++ + G + + +C + Sbjct: 6 RLFMDKKVTEIVEAFAQPIVEELNLELVDVEYVQEGQDWFLRVFIDSEKG-VEIEECGAV 64 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+ +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ Sbjct: 65 SERLSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYKPIDGEKMFE 124 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 GK++ L + K ++ F + +L + D LLR Sbjct: 125 GKLLSYDGNTITLLLTIKTRKKKSK------FQWI---KLQMRDLLLR 163 >gi|326794268|ref|YP_004312088.1| ribosome maturation factor rimP [Marinomonas mediterranea MMB-1] gi|326545032|gb|ADZ90252.1| Ribosome maturation factor rimP [Marinomonas mediterranea MMB-1] Length = 153 Score = 167 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 43/151 (28%), Positives = 84/151 (55%), Gaps = 10/151 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERD-DGNMTLRDCEELSQAISPILDV 82 I +I+PV+E + F+ + + + K+ +L+IF+E D + + + DC ++S+ +S ILDV Sbjct: 8 IEELIRPVVEGLGFQFWGMEYISQGKHSVLRIFIETDKEKGIDVEDCAQVSRQVSSILDV 67 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ I G Y LEVSSPG+DRP+ S + + G VVA ++ + ++K G++ G Sbjct: 68 EDPITGEYNLEVSSPGLDRPLFELSQYESYVGSVVALKLRVPFDGRRKFKGQLTGVEGDE 127 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + +++ + + + + A ++ Sbjct: 128 VVI--------LVDQEEYLLPIELIEKANIV 150 >gi|261400894|ref|ZP_05987019.1| hypothetical protein NEILACOT_04263 [Neisseria lactamica ATCC 23970] gi|269209253|gb|EEZ75708.1| hypothetical protein NEILACOT_04263 [Neisseria lactamica ATCC 23970] Length = 143 Score = 167 bits (423), Expect = 9e-40, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 76/149 (51%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++++ + + + V L + L++F++++ G +T+ DC +S +S + VE Sbjct: 2 DIQTILEKTLPGLGYELVDFELTAQG--TLRVFIDKE-GGITVEDCAAVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +I + LE+SSPG+DRP+ + +DF+R+ G + L ++ IGKI G Sbjct: 59 DI--DYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIDGQKNFIGKIEGCENDTV 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + + I D++ ARL Sbjct: 117 TVSFDGK--------TVQIGLDNIDKARL 137 >gi|120597898|ref|YP_962472.1| hypothetical protein Sputw3181_1068 [Shewanella sp. W3-18-1] gi|146293930|ref|YP_001184354.1| hypothetical protein Sputcn32_2836 [Shewanella putrefaciens CN-32] gi|166977876|sp|A1RGX3|RIMP_SHESW RecName: Full=Ribosome maturation factor rimP gi|166988527|sp|A4Y9C2|RIMP_SHEPC RecName: Full=Ribosome maturation factor rimP gi|120557991|gb|ABM23918.1| protein of unknown function DUF150 [Shewanella sp. W3-18-1] gi|145565620|gb|ABP76555.1| protein of unknown function DUF150 [Shewanella putrefaciens CN-32] gi|319427307|gb|ADV55381.1| protein of unknown function DUF150 [Shewanella putrefaciens 200] Length = 151 Score = 167 bits (423), Expect = 9e-40, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 76/154 (49%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ +++ +E + F+ I ++ K+ +L++F++ ++G + + DC S+ +S + Sbjct: 4 LESRLAEMLKVPVEALGFQLWGIEYVQAGKHSILRVFIDGENG-INIEDCANTSRQVSAV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ + + G V ++ + + L G I Sbjct: 63 LDVEDPISTEYTLEVSSPGVDRPLFTAEQYAAYVGEDVKVQLTMPVAGSRNLKGAITKVE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + ++ ++ D++ +I Sbjct: 123 GQMLSLNVNGK--------ELVVALDNIRKGNVI 148 >gi|329120393|ref|ZP_08249060.1| protein of hypothetical function DUF150 [Neisseria bacilliformis ATCC BAA-1200] gi|327462348|gb|EGF08674.1| protein of hypothetical function DUF150 [Neisseria bacilliformis ATCC BAA-1200] Length = 192 Score = 167 bits (423), Expect = 9e-40, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 74/149 (49%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++++ + + V L + L++F++++ G +T+ DC +S +S + VE Sbjct: 51 DIQNLLEKTLPGLGCELVDHELTAQG--TLRVFIDKE-GGITIDDCAAVSNHLSRLFTVE 107 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 ++ + LE+SSPG+DRP+ + +DF R+ G + L ++ IG+I Sbjct: 108 DV--DYKNLEISSPGLDRPLKKAADFARFAGQEAKIKTRLPVDGQKNFIGRIESCDGQTV 165 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 L + + A++ D++ ARL Sbjct: 166 VLSFDGK--------TAALALDNIDKARL 186 >gi|34223026|sp|Q9CMQ4|RIMP_PASMU RecName: Full=Ribosome maturation factor rimP Length = 151 Score = 167 bits (423), Expect = 9e-40, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 74/154 (48%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 L + ++Q +E++ I ++++++++ G +T+ DC ++S+ +S I Sbjct: 4 LEQKLQELLQSSVEDLGCELWGIECQRAGRYLTVRLYIDKE-GGVTVEDCADVSRQVSAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DR + + R+ G + + + D++K GK+ Sbjct: 63 LDVEDPIADKYNLEVSSPGLDRALFTLDQYQRYIGQEIVVHLRIPVLDRRKWQGKLEKIE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + + + + F ++ A +I Sbjct: 123 NDMLTLIVDGQEQI--------LVFGNIQKANII 148 >gi|256821529|ref|YP_003145492.1| hypothetical protein Kkor_0303 [Kangiella koreensis DSM 16069] gi|256795068|gb|ACV25724.1| protein of unknown function DUF150 [Kangiella koreensis DSM 16069] Length = 150 Score = 167 bits (423), Expect = 9e-40, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 78/156 (50%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M ++ +I+P +E F + L + K+ +L++F++ ++G +++ +C E+S +S Sbjct: 1 MARNAELEKIIRPAVEAAGFEFWGLEHLAQGKHSVLRVFIDHENG-ISVDNCAEVSHQVS 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I+G Y LE+SSPG+DRP+ + F R+ G ++ + ++K G I Sbjct: 60 GVLDVEDPIKGLYNLEISSPGMDRPLFNEQQFARYVGEDAEVKLSVPLNGRRKFKGTIEQ 119 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + I+ + A L+ Sbjct: 120 VEAGVLLLLVDGEVY--------EINCHQIDKAHLV 147 >gi|149909282|ref|ZP_01897938.1| hypothetical protein PE36_05678 [Moritella sp. PE36] gi|149807599|gb|EDM67547.1| hypothetical protein PE36_05678 [Moritella sp. PE36] Length = 152 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 71/135 (52%), Gaps = 2/135 (1%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 L ++ +++P +E + F V I K+ L ++++ ++G + + DC ++S +S Sbjct: 3 SLEQTLTDLLEPTVEMLGFELVGIEFTRAGKHSTLLVYIDHENG-IFVDDCSKVSHQLSA 61 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 I+DVE+ I Y LEVSSPG++RP+ + + + + G + + ++ ++KL G I Sbjct: 62 IMDVEDPISTEYFLEVSSPGMERPLFKVAHYQEYCGSEIKALLRMAVNGRRKLRGVIKSV 121 Query: 139 SETGFFLEKEKRGEK 153 + + + E Sbjct: 122 DGDMITVTIDGKDEV 136 >gi|59801638|ref|YP_208350.1| hypothetical protein NGO1284 [Neisseria gonorrhoeae FA 1090] gi|254494078|ref|ZP_05107249.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268595171|ref|ZP_06129338.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268597520|ref|ZP_06131687.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268599675|ref|ZP_06133842.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268604050|ref|ZP_06138217.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268682509|ref|ZP_06149371.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268684673|ref|ZP_06151535.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|293398727|ref|ZP_06642903.1| hypothetical protein NGNG_02048 [Neisseria gonorrhoeae F62] gi|75355764|sp|Q5F799|RIMP_NEIG1 RecName: Full=Ribosome maturation factor rimP gi|259585809|sp|B4RMZ1|RIMP_NEIG2 RecName: Full=Ribosome maturation factor rimP gi|59718533|gb|AAW89938.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090] gi|226513118|gb|EEH62463.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268548560|gb|EEZ43978.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268551308|gb|EEZ46327.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268583806|gb|EEZ48482.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268588181|gb|EEZ52857.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268622793|gb|EEZ55193.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268624957|gb|EEZ57357.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|291610867|gb|EFF39966.1| hypothetical protein NGNG_02048 [Neisseria gonorrhoeae F62] Length = 149 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 79/153 (51%), Gaps = 13/153 (8%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 G + DI ++++ + + + V L + L++F++++ G +T+ DC +S +S + Sbjct: 4 GSSMDIQTILEKTLPGLGYELVDFELAAQG--TLRVFIDKE-GGITVEDCATVSNHLSRV 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 VE+I G+ LE+SSPG+DRP+ + +DF+R+ G + L G ++ IGKI G Sbjct: 61 FMVEDI--GYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIGGQKNFIGKIEGCE 118 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + + I ++ ARL Sbjct: 119 NDTVTVSFDGK--------TVQIELGNIDKARL 143 >gi|307825108|ref|ZP_07655329.1| protein of unknown function DUF150 [Methylobacter tundripaludum SV96] gi|307733856|gb|EFO04712.1| protein of unknown function DUF150 [Methylobacter tundripaludum SV96] Length = 161 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 84/164 (51%), Gaps = 11/164 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++I+P++E + + V I K+ LL+I+++ D+G + + DC ++S IS ++DVE Sbjct: 8 LVNLIEPIVEGLGYECVGIEYNPHPKHGLLRIYIDSDNG-ILVEDCTKVSHQISGVMDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I G+Y LE+SSPG DRP + S F R+ G V + + ++K+ G I + Sbjct: 67 DPILGNYHLEISSPGEDRPFFKVSQFERYIGSTVLVHLFKAIDGRRKITGLIEKVEDDII 126 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYG 187 L+ E + F ++ ARL+ L+ + Sbjct: 127 TLKD--------GEQVFEVPFIAMSKARLVPEY-LIEKGGRSGK 161 >gi|145637798|ref|ZP_01793447.1| hypothetical protein CGSHiHH_01594 [Haemophilus influenzae PittHH] gi|145268991|gb|EDK08945.1| hypothetical protein CGSHiHH_01594 [Haemophilus influenzae PittHH] Length = 151 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 78/154 (50%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ ++Q +E++ I + +++F+++ DG +T+ DC ++S+ +S I Sbjct: 4 LEQNLQEMLQDAVEDLGCELWGIECQRVGRFMTVRLFIDK-DGGVTVDDCADVSRQVSAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ F R+ G +A + + +++K GK+ Sbjct: 63 LDVEDPIADKYNLEVSSPGLDRPLFTLPQFERYIGQDIAVHLRIPVMERRKWQGKLERIE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + L + + + F ++ A ++ Sbjct: 123 KDMITLIVGDQEQI--------LVFGNIQKANIV 148 >gi|119477403|ref|ZP_01617594.1| hypothetical protein GP2143_00477 [marine gamma proteobacterium HTCC2143] gi|119449329|gb|EAW30568.1| hypothetical protein GP2143_00477 [marine gamma proteobacterium HTCC2143] Length = 151 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 32/150 (21%), Positives = 74/150 (49%), Gaps = 10/150 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ ++ PV E + ++ + L K +++I+++ DG + + DC ++S+ + + DVE Sbjct: 8 LADLVAPVAEALGYQLWGVEYLSHGKQSVVRIYIDSPDG-IDVDDCAKVSRQVGSVFDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I G Y LEVSSPG+DRP+ + + G V ++ + ++ G++ Sbjct: 67 DPIMGEYTLEVSSPGMDRPLFALEQYRPYVGEQVKIKLRTAFDGRRNFSGRMTAIEG--- 123 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLI 173 +++ + + F+ + A ++ Sbjct: 124 -----DDVVVAVDDEEYLLPFELIDKANIV 148 >gi|146308625|ref|YP_001189090.1| hypothetical protein Pmen_3610 [Pseudomonas mendocina ymp] gi|166990870|sp|A4XYE2|RIMP_PSEMY RecName: Full=Ribosome maturation factor rimP gi|145576826|gb|ABP86358.1| protein of unknown function DUF150 [Pseudomonas mendocina ymp] Length = 152 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 40/152 (26%), Positives = 79/152 (51%), Gaps = 10/152 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++ PVIE + ++ I L + ++ LL++++++ DG + + DCE +S+ +S +LD Sbjct: 6 EQLQALLAPVIEALGYQCWGIEFLSQGRHSLLRVYIDKADG-ILIDDCEIVSRQLSGVLD 64 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I Y LEVSSPG+DRP+ F G V ++ ++ G + G Sbjct: 65 VEDPISSEYTLEVSSPGMDRPLFTLEQFAAHVGEQVKIKLRSPFEGRRNFQGLLRGV--- 121 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 +E+ +++ + + D + A +I Sbjct: 122 -----EEQDVVVQVDDHEYLLPIDLIDKANII 148 >gi|66047409|ref|YP_237250.1| hypothetical protein Psyr_4182 [Pseudomonas syringae pv. syringae B728a] gi|71733923|ref|YP_276313.1| hypothetical protein PSPPH_4191 [Pseudomonas syringae pv. phaseolicola 1448A] gi|289676022|ref|ZP_06496912.1| hypothetical protein PsyrpsF_22296 [Pseudomonas syringae pv. syringae FF5] gi|34223096|sp|P95578|RIMP_PSEU2 RecName: Full=Ribosome maturation factor rimP gi|91208357|sp|Q48E75|RIMP_PSE14 RecName: Full=Ribosome maturation factor rimP gi|1835603|gb|AAC45133.1| 15 kDa protein [Pseudomonas syringae pv. syringae] gi|63258116|gb|AAY39212.1| Protein of unknown function DUF150 [Pseudomonas syringae pv. syringae B728a] gi|71554476|gb|AAZ33687.1| YhbC-like protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 158 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 76/154 (49%), Gaps = 10/154 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + ++ PV+ + ++ I + K+ +L+I+++++ G + + DC +S+ IS +LD Sbjct: 12 EQLQDLLAPVVVALGYQCWGIDFSSQGKHSVLRIYIDKE-GGVLVDDCAIVSRQISGVLD 70 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I Y LEVSSPG++RP+ F + G V ++ ++ G + G Sbjct: 71 VEDPISTEYTLEVSSPGMERPLFTIEQFASYAGEQVKIKLRSPFEGRRNFQGLLRGV--- 127 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +E+ + + + + D + A +I T Sbjct: 128 -----EEQDVVVQVEDHEFLLPIDMIDKANIIPT 156 >gi|161870485|ref|YP_001599657.1| hypothetical protein NMCC_1541 [Neisseria meningitidis 053442] gi|259585798|sp|A9M1D3|RIMP_NEIM0 RecName: Full=Ribosome maturation factor rimP gi|161596038|gb|ABX73698.1| conserved hypothetical protein [Neisseria meningitidis 053442] Length = 143 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 76/149 (51%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++++ + + + V L + L++F++++ G +T+ DC +S +S + VE Sbjct: 2 DIQTILEKTLPGLGYELVDFELTAQG--TLRVFIDKE-GGITVEDCATVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +I + LE+SSPG+DRP+ + +DF+R+ G + L ++ IGKI G Sbjct: 59 DI--DYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIDGQKNFIGKIEGCENDTV 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + + I D++ ARL Sbjct: 117 TISFDGK--------TVQIGLDNIDKARL 137 >gi|257482263|ref|ZP_05636304.1| hypothetical protein PsyrptA_03277 [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289624600|ref|ZP_06457554.1| hypothetical protein PsyrpaN_05581 [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|298488454|ref|ZP_07006485.1| 30S ribosomal subunit maturation factor [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|302185430|ref|ZP_07262103.1| hypothetical protein Psyrps6_03769 [Pseudomonas syringae pv. syringae 642] gi|298157079|gb|EFH98168.1| 30S ribosomal subunit maturation factor [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320322530|gb|EFW78623.1| hypothetical protein PsgB076_21417 [Pseudomonas syringae pv. glycinea str. B076] gi|320330001|gb|EFW85988.1| hypothetical protein PsgRace4_10252 [Pseudomonas syringae pv. glycinea str. race 4] gi|330868244|gb|EGH02953.1| ribosome maturation protein RimP [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330875222|gb|EGH09371.1| ribosome maturation protein RimP [Pseudomonas syringae pv. glycinea str. race 4] gi|330888660|gb|EGH21321.1| ribosome maturation protein RimP [Pseudomonas syringae pv. mori str. 301020] gi|330895307|gb|EGH27645.1| ribosome maturation protein RimP [Pseudomonas syringae pv. japonica str. M301072PT] gi|330937944|gb|EGH41731.1| ribosome maturation protein RimP [Pseudomonas syringae pv. pisi str. 1704B] gi|330950307|gb|EGH50567.1| ribosome maturation protein RimP [Pseudomonas syringae Cit 7] gi|330969649|gb|EGH69715.1| ribosome maturation protein RimP [Pseudomonas syringae pv. aceris str. M302273PT] gi|330981088|gb|EGH79191.1| ribosome maturation protein RimP [Pseudomonas syringae pv. aptata str. DSM 50252] gi|330987053|gb|EGH85156.1| ribosome maturation protein RimP [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011497|gb|EGH91553.1| ribosome maturation protein RimP [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 152 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 76/154 (49%), Gaps = 10/154 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + ++ PV+ + ++ I + K+ +L+I+++++ G + + DC +S+ IS +LD Sbjct: 6 EQLQDLLAPVVVALGYQCWGIDFSSQGKHSVLRIYIDKE-GGVLVDDCAIVSRQISGVLD 64 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I Y LEVSSPG++RP+ F + G V ++ ++ G + G Sbjct: 65 VEDPISTEYTLEVSSPGMERPLFTIEQFASYAGEQVKIKLRSPFEGRRNFQGLLRGV--- 121 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +E+ + + + + D + A +I T Sbjct: 122 -----EEQDVVVQVEDHEFLLPIDMIDKANIIPT 150 >gi|237798561|ref|ZP_04587022.1| ribosome maturation protein RimP [Pseudomonas syringae pv. oryzae str. 1_6] gi|237803808|ref|ZP_04591393.1| ribosome maturation protein RimP [Pseudomonas syringae pv. oryzae str. 1_6] gi|237805250|ref|ZP_04591954.1| ribosome maturation protein RimP [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021414|gb|EGI01471.1| ribosome maturation protein RimP [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025788|gb|EGI05844.1| ribosome maturation protein RimP [Pseudomonas syringae pv. oryzae str. 1_6] gi|331026358|gb|EGI06413.1| ribosome maturation protein RimP [Pseudomonas syringae pv. oryzae str. 1_6] Length = 152 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 76/154 (49%), Gaps = 10/154 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + ++ PV+ + ++ I + K+ +L+I+++++ G + + DC +S+ IS +LD Sbjct: 6 EQLQDLLAPVVVALGYQCWGIDFSSQGKHSVLRIYIDKE-GGVLVDDCAIVSRQISGVLD 64 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I Y LEVSSPG++RP+ F + G V ++ ++ G + G Sbjct: 65 VEDPISTEYTLEVSSPGMERPLFTIEQFASYAGEQVKIKLRSPFEGRRNFQGLLRGV--- 121 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +E+ + + + + D + A +I T Sbjct: 122 -----EEQDVVVQVEDHEFLLPIDLIDKANIIPT 150 >gi|259586222|sp|C3K261|RIMP_PSEFS RecName: Full=Ribosome maturation factor rimP Length = 158 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 78/154 (50%), Gaps = 10/154 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 ++ +++ PV+ + + I + ++ +L+++++++ G + + DC +S+ IS +LD Sbjct: 12 EELQALLAPVVVALGYECWGIEFSAQGRHSMLRVYIDKE-GGVLVDDCAIVSRQISGVLD 70 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I Y LEVSSPG++RP+ F ++ G V ++ ++ G + G Sbjct: 71 VEDPISVEYTLEVSSPGMERPLFTIDQFAKFAGEQVKIKLRSPFEGRRNFQGLLRGV--- 127 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +E+ + + + + D + A +I + Sbjct: 128 -----EEQDVVVQVEDHEFLLPIDMIDKANIIPS 156 >gi|145630837|ref|ZP_01786615.1| hypothetical protein CGSHi22421_10572 [Haemophilus influenzae R3021] gi|144983719|gb|EDJ91179.1| hypothetical protein CGSHi22421_10572 [Haemophilus influenzae R3021] Length = 151 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 79/154 (51%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ ++Q +E++ I + +++F+++ DG +T+ DC ++S+ +S I Sbjct: 4 LEQNLQEMLQDAVEDLGCELWGIECQRVGRFITVRLFIDK-DGGVTVDDCADVSRQVSAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ F R+ G +A + + +++K GK+ Sbjct: 63 LDVEDPIADKYNLEVSSPGLDRPLFTLPQFERYIGQDIAVHLRIPVMERRKWQGKLERIE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + L + + + + F ++ A ++ Sbjct: 123 KDMITLIVDDQEQI--------LVFGNIQKANVV 148 >gi|28378677|ref|NP_785569.1| hypothetical protein lp_2044 [Lactobacillus plantarum WCFS1] gi|254556875|ref|YP_003063292.1| hypothetical protein JDM1_1708 [Lactobacillus plantarum JDM1] gi|300768188|ref|ZP_07078093.1| protein of hypothetical function DUF150 [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180816|ref|YP_003924944.1| hypothetical protein LPST_C1634 [Lactobacillus plantarum subsp. plantarum ST-III] gi|34223110|sp|Q88VK3|RIMP_LACPL RecName: Full=Ribosome maturation factor rimP gi|28271513|emb|CAD64418.1| unknown [Lactobacillus plantarum WCFS1] gi|254045802|gb|ACT62595.1| conserved hypothetical protein [Lactobacillus plantarum JDM1] gi|300494252|gb|EFK29415.1| protein of hypothetical function DUF150 [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046307|gb|ADN98850.1| hypothetical protein LPST_C1634 [Lactobacillus plantarum subsp. plantarum ST-III] Length = 158 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 68/158 (43%), Gaps = 8/158 (5%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISP 78 + I V ++ F V + + E L++++++ G + + +C +S +S Sbjct: 4 NVVETIQPVAAAIVSAHQFELVDLEFVREGQSWYLRLYIDKP-GGINIEECAMVSDELSE 62 Query: 79 ILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 LD + I Y LEVSSPG +RP+ +++DF G V + K+ G + Sbjct: 63 KLDAMEPDPIPQAYFLEVSSPGAERPLKKEADFQNAIGKYVHVGLYQKLDGKKIFEGDLT 122 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + T ++ + + I+ + + ARL V Sbjct: 123 AVTPTTLTIDYLDKTRHK----TVTINREQISQARLAV 156 >gi|190575264|ref|YP_001973109.1| hypothetical protein Smlt3391 [Stenotrophomonas maltophilia K279a] gi|226703805|sp|B2FN92|RIMP_STRMK RecName: Full=Ribosome maturation factor rimP gi|190013186|emb|CAQ46819.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a] Length = 196 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 82/158 (51%), Gaps = 12/158 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVE-----RDDGNMTLRDCEELSQA 75 A DI++++ P + + + + L L+++++ + + + + DCE +S+ Sbjct: 5 ATDIANLLAPTVVSLGLELLGVEYLPAPGGATLRLYIDVPLAEQPERIINVDDCERVSRE 64 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LDVE+ I G+Y LEVSSPG+DRP+ F R G + L ++++L G+I Sbjct: 65 VSAQLDVEDPISGNYTLEVSSPGVDRPLFNLEQFARHQGESAKVTLKLPQDNRRRLQGRI 124 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 T E + +++ ++ +S D++ AR++ Sbjct: 125 EATDEAAGTITF------IVDKTEVVVSADNIDKARIM 156 >gi|300113655|ref|YP_003760230.1| hypothetical protein Nwat_0966 [Nitrosococcus watsonii C-113] gi|299539592|gb|ADJ27909.1| protein of unknown function DUF150 [Nitrosococcus watsonii C-113] Length = 151 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 11/154 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE--EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 IS ++ PV+ + + V + L K +LL+I+++ G +T+ DCE S IS + Sbjct: 4 DKRISKLVGPVVAALGYELVGVERLSSVGKGVLLRIYIDAPSG-VTVNDCERTSHQISAL 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE + Y LE+SSPG+DRP+ + F R+ G + + +++ G + G Sbjct: 63 LDVEEPMASAYTLEISSPGLDRPLFTEEHFKRFTGVEASITLSEPLNGRREFKGLLQGIR 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + + + + ARLI Sbjct: 123 GDRVVI--------LVAGEEFELPLEGIKKARLI 148 >gi|166712600|ref|ZP_02243807.1| hypothetical protein Xoryp_14385 [Xanthomonas oryzae pv. oryzicola BLS256] Length = 196 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 77/157 (49%), Gaps = 12/157 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVE-----RDDGNMTLRDCEELSQA 75 A +I++++ P ++ + + + L L+++++ + + + + DCE +S+ Sbjct: 5 ATEIANLLSPTVDSLGLELLGVEYLPAPGGATLRLYIDVPLAEQPERVINVDDCERVSRE 64 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LDVE+ I G+Y LEVSSPG+DRP+ F R G + L+ +++ G+I Sbjct: 65 VSAQLDVEDPISGNYTLEVSSPGVDRPLFTLEQFARHAGESAKIVLKLAQDGRRRFQGEI 124 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + ++ + I FD++ AR+ Sbjct: 125 LRIDAEA------GAVVFAVDGKDVQIGFDNIDKARI 155 >gi|29654725|ref|NP_820417.1| hypothetical cytosolic protein [Coxiella burnetii RSA 493] gi|161830413|ref|YP_001597278.1| hypothetical protein COXBURSA331_A1602 [Coxiella burnetii RSA 331] gi|34223106|sp|Q83BR9|RIMP_COXBU RecName: Full=Ribosome maturation factor rimP gi|189038961|sp|A9N8V8|RIMP_COXBR RecName: Full=Ribosome maturation factor rimP gi|29541993|gb|AAO90931.1| hypothetical cytosolic protein [Coxiella burnetii RSA 493] gi|161762280|gb|ABX77922.1| conserved hypothetical protein [Coxiella burnetii RSA 331] Length = 153 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 11/157 (7%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M A + +I P +E + F V +LQ+FV++ G + L +C ++S+ IS Sbjct: 1 MSQARTLHRLIAPAVEALGFELVGCELFRRGATTILQVFVDKP-GGIGLDECAKVSRQIS 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I G Y LEVSSPG++RP+ + + R+ G+ + +++ G ++ Sbjct: 60 AVLDVEDPIRGRYTLEVSSPGLERPLYTANHYRRFIGNKAKIRLREPREGQRQFRGMVVA 119 Query: 138 TS-ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 E L+ + + K +S + A LI Sbjct: 120 VDNEEQVTLQLDNKILK--------VSLGEIEKANLI 148 >gi|313667983|ref|YP_004048267.1| hypothetical protein NLA_6440 [Neisseria lactamica ST-640] gi|309378388|emb|CBX22989.1| unnamed protein product [Neisseria lactamica Y92-1009] gi|313005445|emb|CBN86880.1| conserved hypothetical protein [Neisseria lactamica 020-06] Length = 143 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 76/149 (51%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++++ + + + V L + L++F++++ G +T+ DC +S +S + VE Sbjct: 2 DIQTILEKTLPGLGYELVDFELTAQG--TLRVFIDKE-GGITVEDCAAVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +I + LE+SSPG+DRP+ + +DF+R+ G + L ++ IGKI G Sbjct: 59 DI--DYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIDGQKNFIGKIEGCENDTV 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + + I D++ ARL Sbjct: 117 TVSFDGK--------TVQIGLDNIDKARL 137 >gi|167630354|ref|YP_001680853.1| conserved hypothetical protein, possible yhbc family [Heliobacterium modesticaldum Ice1] gi|259585782|sp|B0THQ9|RIMP_HELMI RecName: Full=Ribosome maturation factor rimP gi|167593094|gb|ABZ84842.1| conserved hypothetical protein, possible yhbc family [Heliobacterium modesticaldum Ice1] Length = 154 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 48/157 (30%), Positives = 84/157 (53%), Gaps = 10/157 (6%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQA 75 G + L +S+ P++EE+ + + ++E N L+IF++++ G + + DC+E+S+ Sbjct: 3 GKVRLEDRVSAWAMPIVEELGLELIDVEWVKEGGNWYLRIFIDKEAG-IEMEDCQEVSRR 61 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I ILD E+ + Y LEVSSPGIDRP+ D+ R+ G V ++ +G++ Sbjct: 62 IDEILDREDPVAHSYSLEVSSPGIDRPLKSDRDYERFRGETVRITTFAPVMGAKEHLGEL 121 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G +ET + K N+ ++AI + S RL Sbjct: 122 AGKNETSILIRK--------NDEEMAIPLTQVSSVRL 150 >gi|296315230|ref|ZP_06865171.1| hypothetical protein NEIPOLOT_02434 [Neisseria polysaccharea ATCC 43768] gi|296837868|gb|EFH21806.1| hypothetical protein NEIPOLOT_02434 [Neisseria polysaccharea ATCC 43768] Length = 143 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 76/149 (51%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++++ + + + V L + L++F++++ G +T+ DC +S +S + VE Sbjct: 2 DIQTILEKTLPGLGYELVDFELTAQG--TLRVFIDKE-GGITVEDCAAVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +I + LE+SSPG+DRP+ + +DF+R+ G + L ++ IGKI G Sbjct: 59 DI--DYKNLEISSPGLDRPLKKAADFVRFAGQQAKIKTRLPIDGQKNFIGKIEGCENDTV 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + + I D++ ARL Sbjct: 117 TVSFDGK--------TVQIGLDNIDKARL 137 >gi|189424725|ref|YP_001951902.1| hypothetical protein Glov_1666 [Geobacter lovleyi SZ] gi|226736404|sp|B3EAE4|RIMP_GEOLS RecName: Full=Ribosome maturation factor rimP gi|189420984|gb|ACD95382.1| protein of unknown function DUF150 [Geobacter lovleyi SZ] Length = 159 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 83/157 (52%), Gaps = 14/157 (8%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + +++QP+++ M V++ + ++ LL++F+++ DG + L DC E+S+ +S L Sbjct: 7 IQRVETLLQPILDAMGLELVELEFKKVGRSYLLRVFIDKPDG-VNLDDCAEVSRELSVQL 65 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD-----KQKLIGKI 135 DVE+ I Y LEVSSPG+DRP+ ++ DF+R+ G + + D ++ +G + Sbjct: 66 DVEDCIASRYTLEVSSPGLDRPLKKEQDFIRYQGRLAVVKTTELLKDEKGSPRKTFLGFL 125 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G + + ++ Q I +D + A L Sbjct: 126 EGVEDGEVMIRLKE-------GPQARIPWDKIAKAHL 155 >gi|68250160|ref|YP_249272.1| hypothetical protein NTHI1846 [Haemophilus influenzae 86-028NP] gi|145629345|ref|ZP_01785144.1| hypothetical protein CGSHi22121_11095 [Haemophilus influenzae 22.1-21] gi|145641319|ref|ZP_01796898.1| hypothetical protein CGSHiR3021_04472 [Haemophilus influenzae R3021] gi|81335416|sp|Q4QK35|RIMP_HAEI8 RecName: Full=Ribosome maturation factor rimP gi|68058359|gb|AAX88612.1| conserved hypothetical protein [Haemophilus influenzae 86-028NP] gi|144978848|gb|EDJ88571.1| hypothetical protein CGSHi22121_11095 [Haemophilus influenzae 22.1-21] gi|145273862|gb|EDK13729.1| hypothetical protein CGSHiR3021_04472 [Haemophilus influenzae 22.4-21] gi|301170016|emb|CBW29620.1| conserved protein [Haemophilus influenzae 10810] Length = 151 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 79/154 (51%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ ++Q ++++ I + +++F++++ G +T+ DC ++S+ +S I Sbjct: 4 LEQNLQEMLQDAVKDLGCELWGIECQRVGRFMTVRLFIDKE-GGVTVDDCADVSRQVSAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ F R+ G +A + + +++K GK+ Sbjct: 63 LDVEDPIADKYNLEVSSPGLDRPLFTLPQFERYIGQDIAVHLRIPVMERRKWQGKLERIE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + L + + + + F ++ A ++ Sbjct: 123 KDMITLIVDDQEQI--------LVFGNIQKANVV 148 >gi|69246861|ref|ZP_00604153.1| Protein of unknown function DUF150 [Enterococcus faecium DO] gi|257878527|ref|ZP_05658180.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257882945|ref|ZP_05662598.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|257884341|ref|ZP_05663994.1| conserved hypothetical protein [Enterococcus faecium 1,231,501] gi|257889276|ref|ZP_05668929.1| conserved hypothetical protein [Enterococcus faecium 1,231,410] gi|257894714|ref|ZP_05674367.1| conserved hypothetical protein [Enterococcus faecium 1,231,408] gi|258615948|ref|ZP_05713718.1| hypothetical protein EfaeD_09568 [Enterococcus faecium DO] gi|260560112|ref|ZP_05832290.1| conserved hypothetical protein [Enterococcus faecium C68] gi|261207400|ref|ZP_05922086.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289566678|ref|ZP_06447095.1| conserved hypothetical protein [Enterococcus faecium D344SRF] gi|293556648|ref|ZP_06675213.1| hypothetical protein EfmE1039_1955 [Enterococcus faecium E1039] gi|293560201|ref|ZP_06676703.1| hypothetical protein EfmE1162_0858 [Enterococcus faecium E1162] gi|293567722|ref|ZP_06679064.1| hypothetical protein EfmE1071_0525 [Enterococcus faecium E1071] gi|294613938|ref|ZP_06693873.1| hypothetical protein EfmE1636_0063 [Enterococcus faecium E1636] gi|294618724|ref|ZP_06698256.1| hypothetical protein EfmE1679_1593 [Enterococcus faecium E1679] gi|294620762|ref|ZP_06699969.1| hypothetical protein EfmU0317_0176 [Enterococcus faecium U0317] gi|68195042|gb|EAN09505.1| Protein of unknown function DUF150 [Enterococcus faecium DO] gi|257812755|gb|EEV41513.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257818603|gb|EEV45931.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|257820179|gb|EEV47327.1| conserved hypothetical protein [Enterococcus faecium 1,231,501] gi|257825636|gb|EEV52262.1| conserved hypothetical protein [Enterococcus faecium 1,231,410] gi|257831093|gb|EEV57700.1| conserved hypothetical protein [Enterococcus faecium 1,231,408] gi|260073947|gb|EEW62271.1| conserved hypothetical protein [Enterococcus faecium C68] gi|260078291|gb|EEW65996.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289161537|gb|EFD09420.1| conserved hypothetical protein [Enterococcus faecium D344SRF] gi|291589565|gb|EFF21371.1| hypothetical protein EfmE1071_0525 [Enterococcus faecium E1071] gi|291593213|gb|EFF24787.1| hypothetical protein EfmE1636_0063 [Enterococcus faecium E1636] gi|291595037|gb|EFF26382.1| hypothetical protein EfmE1679_1593 [Enterococcus faecium E1679] gi|291599742|gb|EFF30752.1| hypothetical protein EfmU0317_0176 [Enterococcus faecium U0317] gi|291601183|gb|EFF31470.1| hypothetical protein EfmE1039_1955 [Enterococcus faecium E1039] gi|291605873|gb|EFF35305.1| hypothetical protein EfmE1162_0858 [Enterococcus faecium E1162] Length = 157 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 79/158 (50%), Gaps = 8/158 (5%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + ++ ++ P+++E +F V++ ++E K+ L++F++++ G + + +C +S+ +S Sbjct: 3 SVVETVTEMVTPILDEQNFELVEVEFVKEGKSWFLRVFIDKE-GGIDIEECAFVSEKLSE 61 Query: 79 ILDVENI--IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 LD + I Y LEVSSPG +RP+ ++SD+ + G V + +++ G + Sbjct: 62 KLDAADPDPIPQAYFLEVSSPGAERPLKKESDYEKALGDYVHVSLYQPVDGEKQYEGFLQ 121 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L + E ++ ++ ARL + Sbjct: 122 SFDAEQLTL----KIRIKTREKELTFDRKNIAKARLAI 155 >gi|255284073|ref|ZP_05348628.1| hypothetical protein BRYFOR_09459 [Bryantella formatexigens DSM 14469] gi|255265418|gb|EET58623.1| hypothetical protein BRYFOR_09459 [Bryantella formatexigens DSM 14469] Length = 201 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 72/142 (50%), Gaps = 2/142 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPIL 80 +++QP+++ F V + ++E L+ ++++ G +T+ DCE +S+A + IL Sbjct: 54 EQKTEAILQPIVDANGFELVDVEYVKEGGSWYLRAYIDKP-GGITVDDCELVSRAANDIL 112 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D ++ +E Y EVSSPG+ RP+ ++ DF+R G V + +++ G + + Sbjct: 113 DEQDFVEESYIFEVSSPGLGRPLKKEKDFVRSIGEEVEIRTFRAIEKQKEFYGILKAFDK 172 Query: 141 TGFFLEKEKRGEKDMNELQIAI 162 + E E + IA+ Sbjct: 173 ESVTIVLEDESEMQIARADIAL 194 >gi|160871632|ref|ZP_02061764.1| 15 kDa protein [Rickettsiella grylli] gi|159120431|gb|EDP45769.1| 15 kDa protein [Rickettsiella grylli] Length = 153 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 44/149 (29%), Positives = 85/149 (57%), Gaps = 10/149 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I + + P IE + + L E L+I+++ + G +TL DCE +S+ + +LDVE Sbjct: 8 IEARLSPTIEALGYELWACVYLREGQKNRLRIYIDSEKG-ITLSDCERVSRQVGALLDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 ++++GHY LEVSSPG+DRP++++ F R+ G+ + + +++K G + T +G Sbjct: 67 DLLQGHYHLEVSSPGLDRPLIKEDHFQRYVGYPIHVFLQSPIDNQRKFKGLLQSTRASGI 126 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 L +E + + +++D++L A + Sbjct: 127 VLNREGK--------EFVLTWDNILHANV 147 >gi|158320556|ref|YP_001513063.1| hypothetical protein Clos_1524 [Alkaliphilus oremlandii OhILAs] gi|259585693|sp|A8MHI0|RIMP_ALKOO RecName: Full=Ribosome maturation factor rimP gi|158140755|gb|ABW19067.1| protein of unknown function DUF150 [Alkaliphilus oremlandii OhILAs] Length = 154 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 43/155 (27%), Positives = 83/155 (53%), Gaps = 10/155 (6%) Query: 22 AGDISS-VIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 I+ ++ P+I+ +F V + +E N L+I++++ G +TL DC+++S+ + Sbjct: 6 VEKITERLVMPIIQNENFELVDLEYKKEGSNWYLRIYIDKP-GGITLDDCQKVSEQLGEE 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD E+ I +Y LEVSSPG+DRP+ + SDF+R+ G +V ++ + + + G+++G Sbjct: 65 LDREDPISENYFLEVSSPGLDRPLKKDSDFIRFAGEIVEVKLYEALNGNKVIEGELVGLE 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E + G + + + + RL V Sbjct: 125 ENMIKINVANVGL-------LELPKEKVALTRLAV 152 >gi|330958051|gb|EGH58311.1| ribosome maturation protein RimP [Pseudomonas syringae pv. maculicola str. ES4326] Length = 152 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 76/154 (49%), Gaps = 10/154 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + ++ PV+ + ++ I + K+ +L+I+++++ G + + DC +S+ IS +LD Sbjct: 6 EQLQDLLAPVVVALGYQCWGIDFSSQGKHSVLRIYIDKE-GGVLVDDCAIVSRQISGVLD 64 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I Y LEVSSPG++RP+ F + G V ++ ++ G + G Sbjct: 65 VEDPITTEYTLEVSSPGMERPLFTIEQFASYAGEQVKIKLRSPFEGRRNFQGLLRGV--- 121 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +E+ + + + + D + A +I T Sbjct: 122 -----EEQDVVVQVEDHEFLLPIDLIDKANIIPT 150 >gi|261392136|emb|CAX49636.1| conserved hypothetical protein [Neisseria meningitidis 8013] Length = 149 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 77/153 (50%), Gaps = 13/153 (8%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 G + DI ++++ + + + V L + L++F++++ G +T+ DC +S +S + Sbjct: 4 GSSMDIQTILEKTLPGLGYELVDFELTAQG--TLRVFIDKE-GGITVEDCATVSNHLSRV 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 VE+I + LE+SSPG+DRP+ + +DF+R+ G + L ++ IGKI G Sbjct: 61 FMVEDI--DYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIDGQKNFIGKIEGCE 118 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + + I ++ ARL Sbjct: 119 NDTVTVSFDGK--------TVQIELGNIDKARL 143 >gi|257869191|ref|ZP_05648844.1| conserved hypothetical protein [Enterococcus gallinarum EG2] gi|257803355|gb|EEV32177.1| conserved hypothetical protein [Enterococcus gallinarum EG2] Length = 157 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 74/147 (50%), Gaps = 8/147 (5%) Query: 31 PVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDV--ENIIE 87 P++E +F V++ ++E K+ L++F++++ G + + +C +S+ +S LD + I Sbjct: 14 PILEAQNFELVEVEFVKEGKSWFLRVFIDKE-GGIDIEECAFVSEQLSDKLDACDPDPIP 72 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LEVSSPG +RP+ ++ D+ R G + + +++ G + E + Sbjct: 73 QAYFLEVSSPGAERPLKKEEDYHRAVGEYIHLSLYQPVEGEKQFEGFLQSFDEEQLVI-- 130 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 + E ++ I ++ ARL + Sbjct: 131 --KIRIKTREKELTIERKNIAKARLAI 155 >gi|289665187|ref|ZP_06486768.1| hypothetical protein XcampvN_19489 [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289667365|ref|ZP_06488440.1| hypothetical protein XcampmN_02313 [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 196 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 78/157 (49%), Gaps = 12/157 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVE-----RDDGNMTLRDCEELSQA 75 A +I++++ P +E + + + L L+++++ + + + + DCE +S+ Sbjct: 5 ATEIANLLSPTVESLGLELLGVEYLPAPGGATLRLYIDVPLAEQPERVINVDDCERVSRE 64 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LDVE+ I G+Y LEVSSPG+DRP+ F R G + L+ +++ G+I Sbjct: 65 VSAQLDVEDPISGNYTLEVSSPGVDRPLFTLEQFARHAGESAKIVLKLAQDGRRRFQGEI 124 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + ++ ++ I FD++ AR+ Sbjct: 125 LRIDAEA------GAVVFAVDGKEVQIGFDNIDKARI 155 >gi|289578390|ref|YP_003477017.1| hypothetical protein Thit_1191 [Thermoanaerobacter italicus Ab9] gi|297544666|ref|YP_003676968.1| hypothetical protein Tmath_1242 [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528103|gb|ADD02455.1| protein of unknown function DUF150 [Thermoanaerobacter italicus Ab9] gi|296842441|gb|ADH60957.1| protein of unknown function DUF150 [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 151 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 41/152 (26%), Positives = 83/152 (54%), Gaps = 7/152 (4%) Query: 19 MGLAGDIS-SVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAI 76 M I+ ++ P++E+ +F V + +E N L+++++++ G +TL DC+ +S+ + Sbjct: 1 MSKIEQIAKDLVTPILEKNNFELVDVEYKKEGNNWYLRVYIDKE-GGITLDDCQLVSEYL 59 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 S LD + IE Y LEVSSPG+DRP+ + DF R G + + ++K G+++ Sbjct: 60 SDRLDEVDPIEHSYILEVSSPGLDRPLKKPRDFERNIGKEIEISLYSPIDKRKKFEGELI 119 Query: 137 GTSETGFFL----EKEKRGEKDMNELQIAISF 164 + + E+++ K+++ ++ I F Sbjct: 120 EFTGDKIIILYNGERKEFDMKNVSLVKPVIKF 151 >gi|220916333|ref|YP_002491637.1| protein of unknown function DUF150 [Anaeromyxobacter dehalogenans 2CP-1] gi|259585694|sp|B8JFY3|RIMP_ANAD2 RecName: Full=Ribosome maturation factor rimP gi|219954187|gb|ACL64571.1| protein of unknown function DUF150 [Anaeromyxobacter dehalogenans 2CP-1] Length = 171 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 79/165 (47%), Gaps = 17/165 (10%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 G+ +A + +++PV+E + V++ L++F+++ G + + DC+ +S+ Sbjct: 4 IGEQSIAEQVRRLLEPVLERDGYELVEVEWARLAGRWTLRVFIDKA-GGVGIDDCQAVSK 62 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD------- 127 + PILDV ++IE Y LEVSSPG+DRP+ + DF R+ G V + Sbjct: 63 TVEPILDVADVIEPAYDLEVSSPGLDRPLRKPGDFDRYAGQRVHVKAYGPVAGTAPGAPA 122 Query: 128 KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ G + G + L D++ + + D + A L Sbjct: 123 RKHWTGVLKGFRDGAVEL--------DVDGVLHRVPHDQIAKANL 159 >gi|227551757|ref|ZP_03981806.1| protein of hypothetical function DUF150 [Enterococcus faecium TX1330] gi|257887082|ref|ZP_05666735.1| conserved hypothetical protein [Enterococcus faecium 1,141,733] gi|257895647|ref|ZP_05675300.1| conserved hypothetical protein [Enterococcus faecium Com12] gi|257898237|ref|ZP_05677890.1| conserved hypothetical protein [Enterococcus faecium Com15] gi|293377742|ref|ZP_06623931.1| conserved hypothetical protein [Enterococcus faecium PC4.1] gi|293570614|ref|ZP_06681665.1| hypothetical protein EfmE980_0412 [Enterococcus faecium E980] gi|227179062|gb|EEI60034.1| protein of hypothetical function DUF150 [Enterococcus faecium TX1330] gi|257823136|gb|EEV50068.1| conserved hypothetical protein [Enterococcus faecium 1,141,733] gi|257832212|gb|EEV58633.1| conserved hypothetical protein [Enterococcus faecium Com12] gi|257836149|gb|EEV61223.1| conserved hypothetical protein [Enterococcus faecium Com15] gi|291609285|gb|EFF38556.1| hypothetical protein EfmE980_0412 [Enterococcus faecium E980] gi|292643742|gb|EFF61863.1| conserved hypothetical protein [Enterococcus faecium PC4.1] Length = 157 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 78/158 (49%), Gaps = 8/158 (5%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + ++ ++ P+++E F V++ ++E K+ L++F++++ G + + +C +S+ +S Sbjct: 3 SVVETVTEMVTPILDEQHFELVEVEFVKEGKSWFLRVFIDKE-GGIDIEECAFVSEKLSE 61 Query: 79 ILDVENI--IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 LD + I Y LEVSSPG +RP+ ++SD+ + G V + +++ G + Sbjct: 62 KLDAADPDPIPQAYFLEVSSPGAERPLKKESDYEKALGDYVHVSLYQPVDGEKQYEGFLQ 121 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L + E ++ ++ ARL + Sbjct: 122 SFDAEQLTL----KIRIKTREKELTFDRKNIAKARLAI 155 >gi|323489586|ref|ZP_08094813.1| hypothetical protein GPDM_09575 [Planococcus donghaensis MPA1U2] gi|323396717|gb|EGA89536.1| hypothetical protein GPDM_09575 [Planococcus donghaensis MPA1U2] Length = 161 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 78/155 (50%), Gaps = 5/155 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I + QP+ E+ V + L+E ++ L+++V+ + + + C +S+ +S I Sbjct: 4 ITEQIEQIAQPITSELGLELVDVEFLKEGRDWFLRVYVDNPEAPIDIEQCALVSEKLSGI 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + IE +Y LEVSSPG +RP+ ++ DF + G + + D ++ G + Sbjct: 64 LDELDPIEQNYFLEVSSPGAERPLKKEKDFEKAIGKFIYIKTYEPVEDAKEFEGYLKSYD 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + +E + + + + I+I+ + + RL + Sbjct: 124 DEQVEIEIKIKTRRKI----ISIAKNKIAVIRLAI 154 >gi|226323232|ref|ZP_03798750.1| hypothetical protein COPCOM_01004 [Coprococcus comes ATCC 27758] gi|225208422|gb|EEG90776.1| hypothetical protein COPCOM_01004 [Coprococcus comes ATCC 27758] Length = 155 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 72/142 (50%), Gaps = 2/142 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++ P++E+ F + ++E N L+ ++++ G + + DCE +S+ +S IL Sbjct: 8 EQKTEEILNPIVEKHGFDLWDVEYVKEGGNWYLRAYIDKP-GGIMVDDCEVVSRELSDIL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D ++ I+ Y LEVSSPG+ RP+ ++ DF R G V + +++ IG + + Sbjct: 67 DEKDFIDEAYILEVSSPGLGRPLKKEKDFARSLGEEVEVRTYRAIDRQKEFIGILKDYDK 126 Query: 141 TGFFLEKEKRGEKDMNELQIAI 162 +E E ++ IA+ Sbjct: 127 DTVTIEYEDGETMTFDKADIAL 148 >gi|126664887|ref|ZP_01735871.1| hypothetical protein MELB17_03575 [Marinobacter sp. ELB17] gi|126631213|gb|EBA01827.1| hypothetical protein MELB17_03575 [Marinobacter sp. ELB17] Length = 153 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 79/153 (51%), Gaps = 9/153 (5%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + +++PV+E + + I + LL++F++ + + + DCE++S+ +S ++ Sbjct: 5 IKQLEDILRPVVEGLGYEYWGIEFRARGHESLLRLFIDDVEKGIGIEDCEKVSRQVSSVM 64 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I+ Y LEVSSPG+DRP+ + + + GH V + ++ ++K G + G Sbjct: 65 DVEDPIQSEYTLEVSSPGMDRPLFELAQYQAFVGHKVQIRLRMAFEGRRKFQGLLNGIEG 124 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 +++ + + FDS+ A ++ Sbjct: 125 --------DDVIVVVDDHEFLLPFDSIDKANIV 149 >gi|307293341|ref|ZP_07573187.1| protein of unknown function DUF150 [Sphingobium chlorophenolicum L-1] gi|306881407|gb|EFN12623.1| protein of unknown function DUF150 [Sphingobium chlorophenolicum L-1] Length = 174 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 9/174 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDD-GNMTLRDCEELSQAI 76 M +++++I+P ++ + F V+I L + LQI ER + + + DC +S+ + Sbjct: 1 MADIAELTALIEPEVKALGFDLVRIKLFGSGDEYTLQIMAERPETKQLVIEDCATISRRL 60 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 S +LD + IE YRLEVSSPGIDRP+ R +DFL W GH + ++ G + Sbjct: 61 SDVLDEADPIEEAYRLEVSSPGIDRPLTRLTDFLEWTGHEAKIAATETVSGRKSFRGVLN 120 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 G K G +AI F + A+LI+TD L+ AS+ A Sbjct: 121 GIEGEDILFTDAKAG-------DVAIPFALVGDAKLILTDALIAASMPLSSDGA 167 >gi|78358200|ref|YP_389649.1| hypothetical protein Dde_3160 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|91208345|sp|Q30WJ2|RIMP_DESDG RecName: Full=Ribosome maturation factor rimP gi|78220605|gb|ABB39954.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 173 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 74/158 (46%), Gaps = 4/158 (2%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + + +I PVI + ++ +L+I+++ DG +T+ C +S+ I Sbjct: 6 TTIHEQLLEIITPVIRSFDLELWGMDFIQGGKAVLRIYIDGPDG-VTIDQCATVSRHIGL 64 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS---SGDKQKLIGKI 135 L+VE+II G Y LEVSSPG++RP+ + + GH + ++K G + Sbjct: 65 ALEVEDIIAGAYNLEVSSPGLERPLFSAAQLAAYKGHKAELVLRAPCAQFPGRKKFTGVV 124 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 F L+ + D + +++ +D + ARLI Sbjct: 125 GNVEGENFTLQIDPLKGGDNLQEELSAHWDDVKKARLI 162 >gi|114562166|ref|YP_749679.1| hypothetical protein Sfri_0988 [Shewanella frigidimarina NCIMB 400] gi|114333459|gb|ABI70841.1| protein of unknown function DUF150 [Shewanella frigidimarina NCIMB 400] Length = 165 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 74/154 (48%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + ++ +E + F+ I ++ ++ +L++F++ ++G + + DC E S+ +S + Sbjct: 18 IESKLVEMLTVPVEALGFKLWGIEYIQAGRHSILRVFIDHENG-INIEDCAEASRQVSAV 76 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +DVE+ I Y LEVSSPG+DRP+ + + G ++ + + L G I Sbjct: 77 MDVEDPISTEYTLEVSSPGVDRPLFTAEQYRAYIGEETKVQLTMPVAGSRNLKGVISSVD 136 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + + ++ D++ +I Sbjct: 137 GQMLTITVDGK--------DLIVALDNIRKGNVI 162 >gi|163782300|ref|ZP_02177298.1| hypothetical protein HG1285_05920 [Hydrogenivirga sp. 128-5-R1-1] gi|159882333|gb|EDP75839.1| hypothetical protein HG1285_05920 [Hydrogenivirga sp. 128-5-R1-1] Length = 157 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 43/152 (28%), Positives = 82/152 (53%), Gaps = 7/152 (4%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++ I +++P+I+ M +R + E+ +L++ +++ G +T+RDCEE+S+ IS +L Sbjct: 8 ISRRIKELVEPLIKGMGYRLFDVEFKPERGWVLRVIIDKP-GGVTIRDCEEVSKKISGLL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+II Y LE+SSPG+ R + + + + G +V + K++ G + E Sbjct: 67 DVEDIIPFSYMLEISSPGLTRELEKPEHYDFFKGRLVKVVLREPVSGKREATGYVESVRE 126 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 L + ++GE + I F ++ RL Sbjct: 127 GIITLREREKGEA------LHIPFSAIAKGRL 152 >gi|240128558|ref|ZP_04741219.1| hypothetical protein NgonS_08003 [Neisseria gonorrhoeae SK-93-1035] gi|317164605|gb|ADV08146.1| hypothetical protein NGTW08_1178 [Neisseria gonorrhoeae TCDC-NG08107] Length = 143 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 40/149 (26%), Positives = 77/149 (51%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++++ + + + V L + L++F++++ G +T+ DC +S +S + VE Sbjct: 2 DIQTILEKTLPGLGYELVDFELTAQG--TLRVFIDKE-GGITVEDCATVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +I G+ LE+SSPG+DRP+ + +DF+R+ G + L G ++ IGKI G Sbjct: 59 DI--GYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIGGQKNFIGKIEGCENDTV 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + + I ++ ARL Sbjct: 117 TVSFDGK--------TVQIELGNIDKARL 137 >gi|323340012|ref|ZP_08080278.1| protein of hypothetical function DUF150 [Lactobacillus ruminis ATCC 25644] gi|323092518|gb|EFZ35124.1| protein of hypothetical function DUF150 [Lactobacillus ruminis ATCC 25644] Length = 157 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 71/158 (44%), Gaps = 8/158 (5%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + ++ ++ P+++E F V ++E K+ L+I++++ G + + +C +S + Sbjct: 3 SVVETVTELVTPILDERHFELVDAEFVKEGKSWYLRIYIDKP-GGINIEECALVSDLLGE 61 Query: 79 ILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 LD + I Y LEVSSPG +RP+ ++ D+ R + + + + G ++ Sbjct: 62 KLDNCDPDPIPQAYFLEVSSPGAERPLKKERDYERALNYYIHVSLYQPLEGNKVYEGTMV 121 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 LE + + I I + ARL + Sbjct: 122 DLKPDELTLEYMDKTRQK----TIVIPRKQIAQARLAI 155 >gi|157376523|ref|YP_001475123.1| hypothetical protein Ssed_3391 [Shewanella sediminis HAW-EB3] gi|157318897|gb|ABV37995.1| protein of unknown function DUF150 [Shewanella sediminis HAW-EB3] Length = 172 Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 75/161 (46%), Gaps = 10/161 (6%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEEL 72 R + + +++ +E + + ++ K+ +L+++++ + G + + DC E Sbjct: 18 RGVTLATIENRLEEMLKSPVEALGHTLWGLEYVQAGKHSILRVYIDNEKG-IFIEDCAET 76 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+ +S +LDVE+ I Y LEVSSPG+DRP+ + + + V ++ + + L Sbjct: 77 SRQVSAVLDVEDPISTEYTLEVSSPGVDRPLFKAEQYAAYIDETVKIQLTMPVAGSRNLK 136 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 G I G L + ++ I+ D++ LI Sbjct: 137 GTITGIEGQMLSLTVDGN--------ELIIALDNIRKGNLI 169 >gi|289646959|ref|ZP_06478302.1| hypothetical protein Psyrpa2_04287 [Pseudomonas syringae pv. aesculi str. 2250] Length = 152 Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 76/154 (49%), Gaps = 10/154 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + V+ PV+ + ++ I + K+ +L+I+++++ G + + DC +S+ IS +LD Sbjct: 6 EQLQDVLAPVVVALGYQCWGIDFSSQGKHSVLRIYIDKE-GGVLVDDCAIVSRQISGVLD 64 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I Y LEVSSPG++RP+ F + G V ++ ++ G + G Sbjct: 65 VEDPISTEYTLEVSSPGMERPLFTIEQFASYAGEQVKIKLRSPFEGRRNFQGLLRGV--- 121 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +E+ + + + + D + A +I T Sbjct: 122 -----EEQDVVVQVEDHEFLLPIDMIDKANIIPT 150 >gi|222151099|ref|YP_002560253.1| hypothetical protein MCCL_0850 [Macrococcus caseolyticus JCSC5402] gi|254806624|sp|B9EBE6|RIMP_MACCJ RecName: Full=Ribosome maturation factor rimP gi|222120222|dbj|BAH17557.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 155 Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 76/155 (49%), Gaps = 6/155 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + ++ QPV+E + F V + ++E + L+I +++ G + + DC S+ IS + Sbjct: 4 VTERVEAICQPVVESLGFELVDVEYVKEGPDYYLRIAIDKP-GGIDISDCALASEKISEV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +D E+ I Y L+VSSPG +RP+ ++ D+ G V ++ ++ IG++ S Sbjct: 63 MDKEDPITEAYFLDVSSPGAERPLKKEKDYENAIGKHVYVKLYEPVEGDKEWIGELKEVS 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + L + + + I I + RL V Sbjct: 123 KDTITLSAKIKTRTKV----IEIDRKRIAKIRLAV 153 >gi|330877235|gb|EGH11384.1| ribosome maturation protein RimP [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 152 Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 76/154 (49%), Gaps = 10/154 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + ++ PV+ + ++ I + K+ +L+I+++++ G + + DC +S+ IS +LD Sbjct: 6 EQLQGLLAPVVVALGYQCWGIDFSSQGKHSVLRIYIDKE-GGVLVDDCAIVSRQISGVLD 64 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I Y LEVSSPG++RP+ F + G V ++ ++ G + G Sbjct: 65 VEDPISTEYTLEVSSPGMERPLFTIEQFASYAGEQVRIKLRSPFEGRRNFQGLLRGV--- 121 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +E+ + + + + D + A +I T Sbjct: 122 -----EEQDVVVQVEDHEFLLPIDLIDKANIIPT 150 >gi|254419012|ref|ZP_05032736.1| conserved hypothetical protein [Brevundimonas sp. BAL3] gi|196185189|gb|EDX80165.1| conserved hypothetical protein [Brevundimonas sp. BAL3] Length = 199 Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 49/169 (28%), Positives = 82/169 (48%), Gaps = 8/169 (4%) Query: 24 DISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERD-DGNMTLRDCEELSQAISPILD 81 + +I P+ E + V++ L+ K LQI ER D ++++ C +LS+A+S + D Sbjct: 10 QLLELIDPIAESLGLEVVRVRLMTGSKRQRLQIMAERPSDHDISVEQCAKLSRAVSEVFD 69 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + I G Y LEVSSPGIDRP+ R DF + G E +++ G + G + Sbjct: 70 AADPIAGEYMLEVSSPGIDRPLTRPLDFDLFEGEEARLETDRMIEGRKRFKGVLAGYEDG 129 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 ++ + E + I FD L A+L++TD L++ + Sbjct: 130 NVLIDLDGEDETAL------IPFDWLSDAKLVLTDALMKRGAAIRAARG 172 >gi|21243418|ref|NP_643000.1| hypothetical protein XAC2689 [Xanthomonas axonopodis pv. citri str. 306] gi|34223124|sp|Q8PJ53|RIMP_XANAC RecName: Full=Ribosome maturation factor rimP gi|21108969|gb|AAM37536.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 196 Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 79/158 (50%), Gaps = 12/158 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVE-----RDDGNMTLRDCEELSQA 75 A +I++++ P +E + + + L L+++++ + + + + DCE +S+ Sbjct: 5 ATEIANLLSPTVESLGLELLGVEYLPAPGGATLRLYIDVPLAEQPERVINVDDCERVSRE 64 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LDVE+ I G+Y LEVSSPG+DRP+ F R G + L+ +++ G+I Sbjct: 65 VSAQLDVEDPISGNYTLEVSSPGVDRPLFTLEQFARHTGESAKIVLKLAQDGRRRFQGQI 124 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + ++ + I +D++ AR++ Sbjct: 125 LRID------AEAAAVVFAVDGKDVQIGYDNIDKARIV 156 >gi|312796185|ref|YP_004029107.1| hypothetical protein RBRH_03643 [Burkholderia rhizoxinica HKI 454] gi|312167960|emb|CBW74963.1| Hypothetical cytosolic protein [Burkholderia rhizoxinica HKI 454] Length = 216 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 38/150 (25%), Positives = 77/150 (51%), Gaps = 9/150 (6%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 +S +I+ + + + V + +L++F+++ G + + DCE++++ + +L VE Sbjct: 66 QLSELIENTVTGLGYELVDLE--RSGRGMLRVFIDQPAG-IAIDDCEKVTRQLQHVLTVE 122 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DRP+ +++DF R+ G V + G ++ G + + Sbjct: 123 NI--DYERLEVSSPGLDRPLKKRADFERFAGSEVMVTLKQPLGGRKSFRGILHAPNGDTI 180 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLI 173 LE E + ++ + + ARL+ Sbjct: 181 GLEFEGKD----GPARLDFTLADMDRARLV 206 >gi|119470820|ref|ZP_01613431.1| hypothetical protein ATW7_05756 [Alteromonadales bacterium TW-7] gi|119446047|gb|EAW27326.1| hypothetical protein ATW7_05756 [Alteromonadales bacterium TW-7] Length = 151 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 77/156 (49%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 L D+ +++ P +E + F + ++ ++ L++++ +DG +++ +C + S+ IS Sbjct: 2 TKLEQDLVTMLTPAVEMLGFELHGLEFVQAGRHSTLRVYIAHEDG-ISVDNCADASRQIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ILDVE+ I Y LEVSSPG+DRP+ ++ + + G V L ++ G ++ Sbjct: 61 AILDVEDPITNEYDLEVSSPGVDRPLFKQDHYEQAQGEEVRVRTKLPQDGRRNFKGDLIA 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 S L + ++ I ++ A LI Sbjct: 121 VSSDMITLSSDG--------VEHLIMLSNIERANLI 148 >gi|261364308|ref|ZP_05977191.1| hypothetical protein NEIMUCOT_04406 [Neisseria mucosa ATCC 25996] gi|288567561|gb|EFC89121.1| hypothetical protein NEIMUCOT_04406 [Neisseria mucosa ATCC 25996] Length = 143 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 75/149 (50%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++++ + + + V L + L++F++++ G +T+ DC +S +S + VE Sbjct: 2 DIQTILEKTLPGLGYELVDFELTAQG--TLRVFIDKE-GGITVEDCATVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +I + LE+SSPG+DRP+ + +DF+R+ G + L ++ IG+I G Sbjct: 59 DI--DYKNLEISSPGLDRPLKKAADFVRFAGQQAKIKTRLPVDGQKNFIGRIEGCENDTV 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 L + + I D++ ARL Sbjct: 117 TLSFDGK--------TAQIGLDNIDKARL 137 >gi|145638848|ref|ZP_01794456.1| hypothetical protein CGSHiII_01640 [Haemophilus influenzae PittII] gi|145271820|gb|EDK11729.1| hypothetical protein CGSHiII_01640 [Haemophilus influenzae PittII] gi|309750829|gb|ADO80813.1| 30S ribosomal maturation protein RimP [Haemophilus influenzae R2866] Length = 151 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 79/154 (51%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ ++Q +E++ I + +++F++++ G +T+ +C ++S+ +S I Sbjct: 4 LEQNLQEMLQDAVEDLGCELWGIECQRVGRFMTVRLFIDKE-GGVTVDNCADVSRQVSAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ F R+ G +A + + +++K GK+ Sbjct: 63 LDVEDPIADKYNLEVSSPGLDRPLFTLPQFERYIGQDIAVHLRIPVMERRKWQGKLERIE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + L + + + + F ++ A ++ Sbjct: 123 KDMITLIVDDQEQI--------LVFGNIQKANVV 148 >gi|315165483|gb|EFU09500.1| UPF0090 family protein [Enterococcus faecalis TX1302] Length = 185 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 82/156 (52%), Gaps = 8/156 (5%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++ ++ P++EE +F V++ ++E KN L++F++++ G + + +C +S+ +S L Sbjct: 33 VETVTKLVTPILEEQNFELVEVEFVKEGKNWFLRVFIDKE-GGIDIEECAFVSEKLSEKL 91 Query: 81 DV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 D + I Y LEVSSPG +RP+ ++SD+ + G + + + ++++ G ++ Sbjct: 92 DAMDPDPIPQAYFLEVSSPGAERPLKKESDYEQAVGKYIHISLYQAVDGEKQIEGTLVHL 151 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L + + + ++ ++ ARL + Sbjct: 152 DSEQLTLSVKIKTRVN----EMTFERKNIAKARLAI 183 >gi|221232983|ref|YP_002515419.1| hypothetical protein CCNA_00044 [Caulobacter crescentus NA1000] gi|259585738|sp|B8GX01|RIMP_CAUCN RecName: Full=Ribosome maturation factor rimP gi|220962155|gb|ACL93511.1| hypothetical cytosolic protein [Caulobacter crescentus NA1000] Length = 191 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 50/182 (27%), Positives = 88/182 (48%), Gaps = 12/182 (6%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERD------DGNMTLR 67 + G D+ ++ PV E + + V++ L+ + LQI E G+M + Sbjct: 1 MRGKTQEDRDLIEMLDPVAESLGYEIVRLRLMGGTEQRRLQIMAEHPLLEDGSGGDMNVE 60 Query: 68 DCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD 127 DC +LS+A+S +LD + I G Y LEVSSPGIDRP+ R DF + G E+ + Sbjct: 61 DCAKLSRAVSEVLDAADPIAGEYTLEVSSPGIDRPLTRLKDFDDYAGLEARIELDRVAEG 120 Query: 128 KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYG 187 +++ G++ G + L E +++ + F ++ A+L++TD L+ Sbjct: 121 RKRFKGELAGVEDDQVGLNIEGE-----DDVTVYFPFAWVIDAKLVMTDALMERGAKQRA 175 Query: 188 SY 189 + Sbjct: 176 AR 177 >gi|160940463|ref|ZP_02087808.1| hypothetical protein CLOBOL_05353 [Clostridium bolteae ATCC BAA-613] gi|158437043|gb|EDP14810.1| hypothetical protein CLOBOL_05353 [Clostridium bolteae ATCC BAA-613] Length = 155 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 39/142 (27%), Positives = 72/142 (50%), Gaps = 2/142 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + P++EE F V + ++E L+ +++++ G + + DCE +S+A+S L Sbjct: 8 ESRVEKHLLPLMEEHGFELVDVEYVKEAGTWYLRAYIDKE-GGIAVDDCEVISRALSDWL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D E+ I+ Y LEVSSPG+ RP+ ++ DF+R G V + +++ G + E Sbjct: 67 DKEDFIDDSYILEVSSPGLGRPLKKERDFVRSMGKDVDVRLYRQLNKQKEFTGALSAYDE 126 Query: 141 TGFFLEKEKRGEKDMNELQIAI 162 L E + + IA+ Sbjct: 127 NTVTLTMEDGSQMVFEKADIAL 148 >gi|239999348|ref|ZP_04719272.1| hypothetical protein Ngon3_07677 [Neisseria gonorrhoeae 35/02] gi|240014532|ref|ZP_04721445.1| hypothetical protein NgonD_07784 [Neisseria gonorrhoeae DGI18] gi|240016978|ref|ZP_04723518.1| hypothetical protein NgonFA_07392 [Neisseria gonorrhoeae FA6140] gi|240081420|ref|ZP_04725963.1| hypothetical protein NgonF_08941 [Neisseria gonorrhoeae FA19] gi|240113615|ref|ZP_04728105.1| hypothetical protein NgonM_08610 [Neisseria gonorrhoeae MS11] gi|240118337|ref|ZP_04732399.1| hypothetical protein NgonPID_07718 [Neisseria gonorrhoeae PID1] gi|240121054|ref|ZP_04734016.1| hypothetical protein NgonPI_04654 [Neisseria gonorrhoeae PID24-1] gi|240123885|ref|ZP_04736841.1| hypothetical protein NgonP_08079 [Neisseria gonorrhoeae PID332] gi|240126084|ref|ZP_04738970.1| hypothetical protein NgonSK_07689 [Neisseria gonorrhoeae SK-92-679] Length = 143 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 40/149 (26%), Positives = 77/149 (51%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++++ + + + V L + L++F++++ G +T+ DC +S +S + VE Sbjct: 2 DIQTILEKTLPGLGYELVDFELAAQG--TLRVFIDKE-GGITVEDCATVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +I G+ LE+SSPG+DRP+ + +DF+R+ G + L G ++ IGKI G Sbjct: 59 DI--GYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIGGQKNFIGKIEGCENDTV 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + + I ++ ARL Sbjct: 117 TVSFDGK--------TVQIELGNIDKARL 137 >gi|253580824|ref|ZP_04858087.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847894|gb|EES75861.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 154 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 74/148 (50%), Gaps = 6/148 (4%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++ P++E F V + ++E N L+ ++++ G +T+ DCE +S+A S L Sbjct: 8 EKRAEELLAPIVELNGFELVDVEYVKEAGNWYLRGYIDKP-GGITVNDCETVSRAFSDKL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D + IE Y +E+SSPG+DRP+ + DF R G +V +++ G + Sbjct: 67 DENDFIEDSYIMEISSPGLDRPLKKDKDFERNMGKLVEIRTYRPIEKQKEFCGILTAYDS 126 Query: 141 TGFFLEKEKR----GEKDMNELQIAISF 164 ++++ +KD +++AI F Sbjct: 127 NSVTIDEDGTERVFDKKDTALIRLAIEF 154 >gi|77919152|ref|YP_356967.1| hypothetical protein Pcar_1552 [Pelobacter carbinolicus DSM 2380] gi|91208010|sp|Q3A4B0|RIMP_PELCD RecName: Full=Ribosome maturation factor rimP gi|77545235|gb|ABA88797.1| conserved hypothetical protein [Pelobacter carbinolicus DSM 2380] Length = 162 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 83/164 (50%), Gaps = 13/164 (7%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQ 74 + I S++ PV+EE V + E +L++++++ G +TL C E+S+ Sbjct: 1 MTQQTVLDKIRSLVLPVLEEKGRELVDVEYRREGQGWILRLYIDQP-GGVTLDACAEVSR 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG------DK 128 + +L+VE+ I+ Y LEVSSPG+DRP+ + D+ R+ G + + +S + Sbjct: 60 EVGVLLEVEDPIDTAYNLEVSSPGLDRPLTKLEDYERFAGRLAKVKSRVSIDVDGKGRGR 119 Query: 129 QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + +G + G SE LE + + N ++ I F+ + A L Sbjct: 120 KTFVGVLAGLSEGKVVLELKDK-----NGFRMEIPFEDIEKANL 158 >gi|78048395|ref|YP_364570.1| hypothetical protein XCV2839 [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325924689|ref|ZP_08186127.1| hypothetical protein XPE_0035 [Xanthomonas perforans 91-118] gi|91208411|sp|Q3BRP3|RIMP_XANC5 RecName: Full=Ribosome maturation factor rimP gi|78036825|emb|CAJ24518.1| YhbC family protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325544895|gb|EGD16240.1| hypothetical protein XPE_0035 [Xanthomonas perforans 91-118] Length = 196 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 79/158 (50%), Gaps = 12/158 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVE-----RDDGNMTLRDCEELSQA 75 A +I++++ P +E + + + L L+++++ + + + + DCE +S+ Sbjct: 5 ATEIANLLSPTVESLGLELLGVEYLPAPGGATLRLYIDVPLAEQPERVINVDDCERVSRE 64 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LDVE+ I G+Y LEVSSPG+DRP+ F R G + L+ +++ G+I Sbjct: 65 VSAQLDVEDPISGNYTLEVSSPGVDRPLFTLEQFARHTGESAKIVLKLAQDGRRRFQGEI 124 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + ++ + I +D++ AR++ Sbjct: 125 LRIDAEA------EAVVFAVDGKDVQIGYDNIDKARIV 156 >gi|261856065|ref|YP_003263348.1| hypothetical protein Hneap_1469 [Halothiobacillus neapolitanus c2] gi|261836534|gb|ACX96301.1| protein of unknown function DUF150 [Halothiobacillus neapolitanus c2] Length = 166 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 7/153 (4%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + I +++QPV+E V + LL+++++ + G +TL DC ++S A+S +L Sbjct: 4 IPESIEALLQPVVEAAGCAWVGGEFRGGPDGLLRVYIDTEAG-VTLDDCTKVSDALSGVL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ G YRLEVSSPG++RPM R SDF + G V + +++ G + Sbjct: 63 DVEDPFPGFYRLEVSSPGVERPMFRASDFALFIGQKVHVRLHRPLAQRRRFEGIVSAVDG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L E ++ F + A L+ Sbjct: 123 EQISLSIEG------DQDVFTFPFSEVERANLV 149 >gi|325915553|ref|ZP_08177864.1| hypothetical protein XVE_1758 [Xanthomonas vesicatoria ATCC 35937] gi|325538269|gb|EGD09954.1| hypothetical protein XVE_1758 [Xanthomonas vesicatoria ATCC 35937] Length = 196 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 78/157 (49%), Gaps = 12/157 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVE-----RDDGNMTLRDCEELSQA 75 A +I++++ P +E + + + L L+++++ + + + + DCE +S+ Sbjct: 5 ATEIANLLSPTVESLGLELLGVEYLPAPGGATLRLYIDVPLAEQPERVINVDDCERVSRE 64 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LDVE+ I G+Y LEVSSPG+DRP+ F R G + L+ +++ G+I Sbjct: 65 VSAQLDVEDPISGNYTLEVSSPGVDRPLFTLEQFARHAGESAKIVLKLAQDGRRRFQGQI 124 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + T ++ + I FD++ AR+ Sbjct: 125 LRTETEA------DAVVFSVDGKDVQIGFDNIDKARI 155 >gi|308389760|gb|ADO32080.1| hypothetical protein NMBB_1873 [Neisseria meningitidis alpha710] gi|325134693|gb|EGC57332.1| hypothetical protein NMBM13399_0599 [Neisseria meningitidis M13399] gi|325198740|gb|ADY94196.1| conserved hypothetical protein [Neisseria meningitidis G2136] Length = 143 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 75/149 (50%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++++ + + + V L + L++F++++ G +T+ DC +S +S + VE Sbjct: 2 DIQTILEKTLPGLGYELVDFELTAQG--TLRVFIDKE-GGITVEDCATVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +I + LE+SSPG+DRP+ + +DF+R+ G + L ++ IGKI G Sbjct: 59 DI--DYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIDGQKNFIGKIEGCENDTV 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + + I ++ ARL Sbjct: 117 TISFDGK--------TVQIELGNIDKARL 137 >gi|15677490|ref|NP_274646.1| hypothetical protein NMB1641 [Neisseria meningitidis MC58] gi|218768663|ref|YP_002343175.1| hypothetical protein NMA1895 [Neisseria meningitidis Z2491] gi|304386890|ref|ZP_07369152.1| protein of hypothetical function DUF150 [Neisseria meningitidis ATCC 13091] gi|54040272|sp|P67217|RIMP_NEIMB RecName: Full=Ribosome maturation factor rimP gi|54042665|sp|P67216|RIMP_NEIMA RecName: Full=Ribosome maturation factor rimP gi|7226891|gb|AAF41990.1| conserved hypothetical protein [Neisseria meningitidis MC58] gi|121052671|emb|CAM09012.1| conserved hypothetical protein [Neisseria meningitidis Z2491] gi|304339049|gb|EFM05141.1| protein of hypothetical function DUF150 [Neisseria meningitidis ATCC 13091] Length = 149 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 77/153 (50%), Gaps = 13/153 (8%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 G + DI ++++ + + + V L + L++F++++ G +T+ DC +S +S + Sbjct: 4 GSSMDIQTILEKTLPGLGYELVDFELTAQG--TLRVFIDKESG-ITVEDCATVSNHLSRV 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 VE+I + LE+SSPG+DRP+ + +DF+R+ G + L ++ IGKI G Sbjct: 61 FMVEDI--DYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIDGQKNFIGKIEGCE 118 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + + I ++ ARL Sbjct: 119 NDTVTVSFDGK--------TVQIELGNIDKARL 143 >gi|167037625|ref|YP_001665203.1| hypothetical protein Teth39_1213 [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|307264911|ref|ZP_07546473.1| protein of unknown function DUF150 [Thermoanaerobacter wiegelii Rt8.B1] gi|320116040|ref|YP_004186199.1| hypothetical protein Thebr_1242 [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|326389439|ref|ZP_08211006.1| protein of unknown function DUF150 [Thermoanaerobacter ethanolicus JW 200] gi|226696278|sp|B0K9Q4|RIMP_THEP3 RecName: Full=Ribosome maturation factor rimP gi|166856459|gb|ABY94867.1| protein of unknown function DUF150 [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|306920169|gb|EFN50381.1| protein of unknown function DUF150 [Thermoanaerobacter wiegelii Rt8.B1] gi|319929131|gb|ADV79816.1| protein of unknown function DUF150 [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|325994444|gb|EGD52869.1| protein of unknown function DUF150 [Thermoanaerobacter ethanolicus JW 200] Length = 151 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 41/152 (26%), Positives = 83/152 (54%), Gaps = 7/152 (4%) Query: 19 MGLAGDIS-SVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAI 76 M I+ ++ PV+E+ +F V + +E + L+++++++ G +TL DC+ +S+ + Sbjct: 1 MSKIEQIAKDLVMPVLEKNNFELVDVEYKKEGSHWYLRVYIDKE-GGITLDDCQLVSEYL 59 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 S LD + IE Y LEVSSPG+DRP+ + DF R G + + ++K G+++ Sbjct: 60 SDRLDEVDPIEHSYILEVSSPGLDRPLKKPRDFERNIGKEIEISLYAPIDKRKKFEGELI 119 Query: 137 GTSETGFFL----EKEKRGEKDMNELQIAISF 164 + + E+++ K+++ ++ I F Sbjct: 120 EFTGDKIIILYNGERKEFDMKNVSLVKPVIKF 151 >gi|300854497|ref|YP_003779481.1| hypothetical protein CLJU_c13110 [Clostridium ljungdahlii DSM 13528] gi|300434612|gb|ADK14379.1| conserved hypothetical protein [Clostridium ljungdahlii DSM 13528] Length = 154 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 45/151 (29%), Positives = 84/151 (55%), Gaps = 9/151 (5%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILD 81 +S++IQP++ +++ + +E N L+I++++ +GN++L DCE +S+A+S +LD Sbjct: 8 ERMSALIQPIVNNLNYELYYLEFKKEGNNNYLRIYIDKKEGNISLEDCESVSRAVSDMLD 67 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 E+ I+ Y LEVSSPG++R + + R+ G+ V I K+K G+++ + Sbjct: 68 KEDPIKDPYYLEVSSPGVERKLYTEEHLKRYIGYSVQVNISGLLKGKKKYEGELLDFNSN 127 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ E E IAI D +L+ L Sbjct: 128 ELKIKCE--------EEDIAIPRDKILNVNL 150 >gi|325921397|ref|ZP_08183254.1| hypothetical protein XGA_2246 [Xanthomonas gardneri ATCC 19865] gi|325548155|gb|EGD19152.1| hypothetical protein XGA_2246 [Xanthomonas gardneri ATCC 19865] Length = 196 Score = 164 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 77/157 (49%), Gaps = 12/157 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVE-----RDDGNMTLRDCEELSQA 75 A +I++++ P +E + + + L L+++++ + + + + DCE +S+ Sbjct: 5 ATEIANLLSPTVESLGLELLGVEYLPAPGGATLRLYIDVPLAEQPERVINVDDCERVSRE 64 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LDVE+ I G+Y LEVSSPG+DRP+ F R G + L+ +++ GKI Sbjct: 65 VSAQLDVEDPITGNYTLEVSSPGVDRPLFTLEQFARHVGESAKIVLKLAQDGRRRFQGKI 124 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + ++ + I FD++ AR+ Sbjct: 125 LRIEAEA------DAVVFAIDGKDVQIGFDNIDKARI 155 >gi|227518529|ref|ZP_03948578.1| protein of hypothetical function DUF150 [Enterococcus faecalis TX0104] gi|227553055|ref|ZP_03983104.1| protein of hypothetical function DUF150 [Enterococcus faecalis HH22] gi|229546054|ref|ZP_04434779.1| protein of hypothetical function DUF150 [Enterococcus faecalis TX1322] gi|229550244|ref|ZP_04438969.1| protein of hypothetical function DUF150 [Enterococcus faecalis ATCC 29200] gi|293383161|ref|ZP_06629078.1| UPF0090 protein [Enterococcus faecalis R712] gi|293387685|ref|ZP_06632230.1| UPF0090 protein [Enterococcus faecalis S613] gi|307268538|ref|ZP_07549911.1| UPF0090 family protein [Enterococcus faecalis TX4248] gi|307273443|ref|ZP_07554688.1| UPF0090 family protein [Enterococcus faecalis TX0855] gi|307277606|ref|ZP_07558698.1| UPF0090 family protein [Enterococcus faecalis TX2134] gi|307279084|ref|ZP_07560142.1| UPF0090 family protein [Enterococcus faecalis TX0860] gi|307288431|ref|ZP_07568419.1| UPF0090 family protein [Enterococcus faecalis TX0109] gi|307291250|ref|ZP_07571134.1| UPF0090 family protein [Enterococcus faecalis TX0411] gi|312899342|ref|ZP_07758675.1| UPF0090 family protein [Enterococcus faecalis TX0470] gi|312904019|ref|ZP_07763187.1| UPF0090 family protein [Enterococcus faecalis TX0635] gi|312907250|ref|ZP_07766241.1| UPF0090 family protein [Enterococcus faecalis DAPTO 512] gi|312909868|ref|ZP_07768716.1| SP14.3 family protein [Enterococcus faecalis DAPTO 516] gi|312952266|ref|ZP_07771141.1| UPF0090 family protein [Enterococcus faecalis TX0102] gi|227074011|gb|EEI11974.1| protein of hypothetical function DUF150 [Enterococcus faecalis TX0104] gi|227177798|gb|EEI58770.1| protein of hypothetical function DUF150 [Enterococcus faecalis HH22] gi|229304682|gb|EEN70678.1| protein of hypothetical function DUF150 [Enterococcus faecalis ATCC 29200] gi|229308827|gb|EEN74814.1| protein of hypothetical function DUF150 [Enterococcus faecalis TX1322] gi|291079500|gb|EFE16864.1| UPF0090 protein [Enterococcus faecalis R712] gi|291082874|gb|EFE19837.1| UPF0090 protein [Enterococcus faecalis S613] gi|306497481|gb|EFM67014.1| UPF0090 family protein [Enterococcus faecalis TX0411] gi|306500602|gb|EFM69931.1| UPF0090 family protein [Enterococcus faecalis TX0109] gi|306504209|gb|EFM73421.1| UPF0090 family protein [Enterococcus faecalis TX0860] gi|306505871|gb|EFM75049.1| UPF0090 family protein [Enterococcus faecalis TX2134] gi|306509970|gb|EFM78995.1| UPF0090 family protein [Enterococcus faecalis TX0855] gi|306515134|gb|EFM83676.1| UPF0090 family protein [Enterococcus faecalis TX4248] gi|310626278|gb|EFQ09561.1| UPF0090 family protein [Enterococcus faecalis DAPTO 512] gi|310629650|gb|EFQ12933.1| UPF0090 family protein [Enterococcus faecalis TX0102] gi|310632495|gb|EFQ15778.1| UPF0090 family protein [Enterococcus faecalis TX0635] gi|311289826|gb|EFQ68382.1| SP14.3 family protein [Enterococcus faecalis DAPTO 516] gi|311293493|gb|EFQ72049.1| UPF0090 family protein [Enterococcus faecalis TX0470] gi|315027495|gb|EFT39427.1| UPF0090 family protein [Enterococcus faecalis TX2137] gi|315030926|gb|EFT42858.1| UPF0090 family protein [Enterococcus faecalis TX4000] gi|315034082|gb|EFT46014.1| UPF0090 family protein [Enterococcus faecalis TX0017] gi|315036750|gb|EFT48682.1| UPF0090 family protein [Enterococcus faecalis TX0027] gi|315145576|gb|EFT89592.1| UPF0090 family protein [Enterococcus faecalis TX2141] gi|315147749|gb|EFT91765.1| UPF0090 family protein [Enterococcus faecalis TX4244] gi|315151450|gb|EFT95466.1| UPF0090 family protein [Enterococcus faecalis TX0012] gi|315153229|gb|EFT97245.1| UPF0090 family protein [Enterococcus faecalis TX0031] gi|315155992|gb|EFU00009.1| UPF0090 family protein [Enterococcus faecalis TX0043] gi|315157836|gb|EFU01853.1| UPF0090 family protein [Enterococcus faecalis TX0312] gi|315160338|gb|EFU04355.1| UPF0090 family protein [Enterococcus faecalis TX0645] gi|315166761|gb|EFU10778.1| UPF0090 family protein [Enterococcus faecalis TX1341] gi|315169948|gb|EFU13965.1| UPF0090 family protein [Enterococcus faecalis TX1342] gi|315174356|gb|EFU18373.1| UPF0090 family protein [Enterococcus faecalis TX1346] gi|315575676|gb|EFU87867.1| UPF0090 family protein [Enterococcus faecalis TX0309B] gi|315578366|gb|EFU90557.1| UPF0090 family protein [Enterococcus faecalis TX0630] gi|315579880|gb|EFU92071.1| UPF0090 family protein [Enterococcus faecalis TX0309A] gi|327534891|gb|AEA93725.1| protein of hypothetical function DUF150 [Enterococcus faecalis OG1RF] gi|329577095|gb|EGG58568.1| hypothetical protein HMPREF9520_01115 [Enterococcus faecalis TX1467] Length = 185 Score = 164 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 81/156 (51%), Gaps = 8/156 (5%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++ ++ P++EE +F V++ ++E KN L++F++++ G + + +C +S+ +S L Sbjct: 33 VETVTKLVTPILEEQNFELVEVEFVKEGKNWFLRVFIDKE-GGIDIEECAFVSEKLSEKL 91 Query: 81 DV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 D + I Y LEVSSPG +RP+ ++SD+ + G + + + ++++ G ++ Sbjct: 92 DAMDPDPIPQAYFLEVSSPGAERPLKKESDYEQAVGKYIHISLYQAVDGEKQIEGTLVHL 151 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L + + ++ ++ ARL + Sbjct: 152 DSEQLTLSVKIKTRVK----EMTFERKNIAKARLAI 183 >gi|329896245|ref|ZP_08271423.1| clustered with transcription termination protein NusA [gamma proteobacterium IMCC3088] gi|328921916|gb|EGG29283.1| clustered with transcription termination protein NusA [gamma proteobacterium IMCC3088] Length = 155 Score = 164 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 79/152 (51%), Gaps = 10/152 (6%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 +++ +++ +E M F + + KN LL+++++R+ G + + DC ++S+ IS IL Sbjct: 9 EAELADLLRATVEAMGFALWGLEFRAQGKNSLLRVYIDREAG-VQVDDCAQVSRQISGIL 67 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I G Y LEVSSPGIDR + ++ G + ++ + ++ G ++G + Sbjct: 68 DVEDPIAGEYNLEVSSPGIDRLLFSLEQCQQYVGEWLEVKLRVPFEGRKNFNGTLVGIED 127 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + + FDS+ A++ Sbjct: 128 QDVVVRIDDD--------EYVLPFDSIDKAKV 151 >gi|256750787|ref|ZP_05491672.1| protein of unknown function DUF150 [Thermoanaerobacter ethanolicus CCSD1] gi|256750370|gb|EEU63389.1| protein of unknown function DUF150 [Thermoanaerobacter ethanolicus CCSD1] Length = 151 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 40/152 (26%), Positives = 83/152 (54%), Gaps = 7/152 (4%) Query: 19 MGLAGDIS-SVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAI 76 M I+ ++ P++E+ +F V + +E + L+++++++ G +TL DC+ +S+ + Sbjct: 1 MSKIEQIAKDLVMPILEKNNFELVDVEYKKEGSHWYLRVYIDKE-GGITLDDCQLVSEYL 59 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 S LD + IE Y LEVSSPG+DRP+ + DF R G + + ++K G+++ Sbjct: 60 SDRLDEVDPIEHSYILEVSSPGLDRPLKKPRDFERNIGKEIEISLYSPIDKRKKFEGELI 119 Query: 137 GTSETGFFL----EKEKRGEKDMNELQIAISF 164 + + E+++ K+++ ++ I F Sbjct: 120 EFTGDKIIILYNGERKEFDMKNVSLVKPVIKF 151 >gi|91205426|ref|YP_537781.1| hypothetical protein RBE_0611 [Rickettsia bellii RML369-C] gi|157827029|ref|YP_001496093.1| hypothetical protein A1I_03485 [Rickettsia bellii OSU 85-389] gi|91068970|gb|ABE04692.1| unknown [Rickettsia bellii RML369-C] gi|157802333|gb|ABV79056.1| hypothetical protein A1I_03485 [Rickettsia bellii OSU 85-389] Length = 180 Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats. Identities = 48/164 (29%), Positives = 92/164 (56%), Gaps = 9/164 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVER-DDGNMTLRDCEELSQAISPI 79 + I+ +IQ + +M F V + + + +++I ++R DD +T+ DC + S IS I Sbjct: 16 IEQQITDLIQETLSDMGFELVLVRVKGLSSKVVEILIDRLDDQKVTIEDCTKASNTISAI 75 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE++IE Y LEVSS G++RP+V+ ++ R+ G V ++ + + G I+ Sbjct: 76 LDVEDLIEEAYYLEVSSSGVERPLVKFENYKRFIGREVKIKLKELLNGRSRYQGTIIEAK 135 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 + +L+ E + ++ I++D + SA L++T+E+ + L Sbjct: 136 DDKVYLKWEDQ--------EVIINYDLIKSANLVLTEEMFKKLL 171 >gi|167040286|ref|YP_001663271.1| hypothetical protein Teth514_1649 [Thermoanaerobacter sp. X514] gi|300914370|ref|ZP_07131686.1| protein of unknown function DUF150 [Thermoanaerobacter sp. X561] gi|307724394|ref|YP_003904145.1| hypothetical protein Thet_1251 [Thermoanaerobacter sp. X513] gi|226736395|sp|B0K1E0|RIMP_THEPX RecName: Full=Ribosome maturation factor rimP gi|166854526|gb|ABY92935.1| protein of unknown function DUF150 [Thermoanaerobacter sp. X514] gi|300889305|gb|EFK84451.1| protein of unknown function DUF150 [Thermoanaerobacter sp. X561] gi|307581455|gb|ADN54854.1| protein of unknown function DUF150 [Thermoanaerobacter sp. X513] Length = 151 Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats. Identities = 40/152 (26%), Positives = 83/152 (54%), Gaps = 7/152 (4%) Query: 19 MGLAGDIS-SVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAI 76 M I+ ++ P++E+ +F V + +E + L+++++++ G +TL DC+ +S+ + Sbjct: 1 MSKIEQIAKDLVMPILEKNNFELVDVEYKKEGSHWYLRVYIDKE-GGITLDDCQLVSEYL 59 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 S LD + IE Y LEVSSPG+DRP+ + DF R G + + ++K G+++ Sbjct: 60 SDRLDEVDPIEHSYILEVSSPGLDRPLKKPRDFERNIGKEIEISLYTPIDKRKKFEGELI 119 Query: 137 GTSETGFFL----EKEKRGEKDMNELQIAISF 164 + + E+++ K+++ ++ I F Sbjct: 120 EFTGDKIIILYNGERKEFDMKNVSLVKPVIKF 151 >gi|195953995|ref|YP_002122285.1| protein of unknown function DUF150 [Hydrogenobaculum sp. Y04AAS1] gi|226736378|sp|B4U6H1|RIMP_HYDS0 RecName: Full=Ribosome maturation factor rimP gi|195933607|gb|ACG58307.1| protein of unknown function DUF150 [Hydrogenobaculum sp. Y04AAS1] Length = 154 Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats. Identities = 43/152 (28%), Positives = 76/152 (50%), Gaps = 9/152 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 +A + +++P+ + + FR + E +L+I ++++ G +T+ DCEELS+ +S +L Sbjct: 7 IATTVKDLVKPISDNLGFRLFDVEFKPENGWVLRIIIDKE-GGVTIDDCEELSKRVSALL 65 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE++I Y LEVSSPG+ R + K + + G + +KQ+ G I + Sbjct: 66 DVEDVITSSYFLEVSSPGLTRELKEKWHYEFFKGKYARLYLKEKIDNKQEYAGYIDSVED 125 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 L + + I FD + ARL Sbjct: 126 DTLVLRLLDK--------TLKIPFDKIAKARL 149 >gi|28871626|ref|NP_794245.1| hypothetical protein PSPTO_4492 [Pseudomonas syringae pv. tomato str. DC3000] gi|213966649|ref|ZP_03394800.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] gi|301383159|ref|ZP_07231577.1| hypothetical protein PsyrptM_11007 [Pseudomonas syringae pv. tomato Max13] gi|302063406|ref|ZP_07254947.1| hypothetical protein PsyrptK_25769 [Pseudomonas syringae pv. tomato K40] gi|302133779|ref|ZP_07259769.1| hypothetical protein PsyrptN_20414 [Pseudomonas syringae pv. tomato NCPPB 1108] gi|34222830|sp|Q87WQ3|RIMP_PSESM RecName: Full=Ribosome maturation factor rimP gi|28854878|gb|AAO57940.1| conserved protein of unknown function [Pseudomonas syringae pv. tomato str. DC3000] gi|213928499|gb|EEB62043.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] Length = 158 Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 76/154 (49%), Gaps = 10/154 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + ++ PV+ + ++ I + K+ +L+I+++++ G + + DC +S+ IS +LD Sbjct: 12 EQLQGLLAPVVVALGYQCWGIDFSSQGKHSVLRIYIDKE-GGVLVDDCAIVSRQISGVLD 70 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I Y LEVSSPG++RP+ F + G V ++ ++ G + G Sbjct: 71 VEDPISTEYTLEVSSPGMERPLFTIEQFALYAGEQVRIKLRSPFEGRRNFQGLLRGV--- 127 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +E+ + + + + D + A +I T Sbjct: 128 -----EEQDVVVQVEDHEFLLPIDLIDKANIIPT 156 >gi|94497166|ref|ZP_01303738.1| hypothetical protein SKA58_13228 [Sphingomonas sp. SKA58] gi|94423271|gb|EAT08300.1| hypothetical protein SKA58_13228 [Sphingomonas sp. SKA58] Length = 196 Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats. Identities = 54/186 (29%), Positives = 83/186 (44%), Gaps = 12/186 (6%) Query: 10 KYEPRIFGD---MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERD-DGNM 64 E R+ M ++++I+P ++ + F V+I L + LQI E + Sbjct: 11 DAEARMIVSGDCMADIAALTALIEPEVQALGFDLVRIKLFGSGDDYTLQIMAENPRTKQL 70 Query: 65 TLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS 124 + DC +S+ +S +LD + IE YRLEVSSPGIDRP+ R DF W GH Sbjct: 71 VIEDCATISRRLSDVLDEADPIEEAYRLEVSSPGIDRPLTRLHDFQEWAGHEAKIGASEI 130 Query: 125 SGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLN 184 ++ G + G K G + I F + A+L++TD L+ AS+ Sbjct: 131 VSGRKSFRGVVNGVDGEEILFTDAKSG-------DVRIPFALVDEAKLLLTDALIAASMP 183 Query: 185 NYGSYA 190 A Sbjct: 184 LSSDGA 189 >gi|268601717|ref|ZP_06135884.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|291043425|ref|ZP_06569146.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|268585848|gb|EEZ50524.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|291012661|gb|EFE04646.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] Length = 149 Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 78/153 (50%), Gaps = 13/153 (8%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 G + DI ++++ + + + L + L++F++++ G +T+ DC +S +S + Sbjct: 4 GSSMDIQTILEKTLPGLGYELADFELAAQG--TLRVFIDKE-GGITVEDCATVSNHLSRV 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 VE+I G+ LE+SSPG+DRP+ + +DF+R+ G + L G ++ IGKI G Sbjct: 61 FMVEDI--GYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIGGQKNFIGKIEGCE 118 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + + I ++ ARL Sbjct: 119 NDTVTVSFDGK--------TVQIELGNIDKARL 143 >gi|261379109|ref|ZP_05983682.1| hypothetical protein NEICINOT_05033 [Neisseria cinerea ATCC 14685] gi|269144429|gb|EEZ70847.1| hypothetical protein NEICINOT_05033 [Neisseria cinerea ATCC 14685] Length = 143 Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 76/149 (51%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++++ + + + V L + L++F++++ G +T+ DC +S +S + VE Sbjct: 2 DIQTILEKTLPGLGYELVDFELTAQG--TLRVFIDKE-GGITVEDCATVSNHLSRLFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +I + LE+SSPG+DRP+ + +DF+R+ G + L ++ IGKI G Sbjct: 59 DI--DYKNLEISSPGLDRPLKKAADFVRFAGQQAKIKTRLPIDGQKNFIGKIEGCENDTV 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + + I D++ ARL Sbjct: 117 TVSFDGK--------TVQIEIDNIDKARL 137 >gi|21231946|ref|NP_637863.1| hypothetical protein XCC2513 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|188991043|ref|YP_001903053.1| hypothetical protein xccb100_1647 [Xanthomonas campestris pv. campestris str. B100] gi|34223123|sp|Q8P7U5|RIMP_XANCP RecName: Full=Ribosome maturation factor rimP gi|226736393|sp|B0RRB2|RIMP_XANCB RecName: Full=Ribosome maturation factor rimP gi|21113675|gb|AAM41787.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|167732803|emb|CAP50997.1| YhbC family protein [Xanthomonas campestris pv. campestris] Length = 196 Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 78/157 (49%), Gaps = 12/157 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVE-----RDDGNMTLRDCEELSQA 75 A +I++++ P +E + + + L L+++++ + D + + DCE +S+ Sbjct: 5 ATEIANLLGPTVESLGLELLGVEYLPAPGGATLRLYIDVPLAEQPDRIINVDDCERVSRE 64 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LDVE+ I G+Y LEVSSPG+DRP+ F R G + L+ +++ G+I Sbjct: 65 VSAQLDVEDPISGNYTLEVSSPGVDRPLFTLDQFARHVGESAKIVLKLAQDGRRRFQGQI 124 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + G+ + I FD++ AR+ Sbjct: 125 VRIDTEAAAVVFSVDGK------DVQIGFDNIDKARI 155 >gi|121635281|ref|YP_975526.1| hypothetical protein NMC1555 [Neisseria meningitidis FAM18] gi|259585799|sp|A1KV49|RIMP_NEIMF RecName: Full=Ribosome maturation factor rimP gi|120866987|emb|CAM10750.1| conserved hypothetical protein [Neisseria meningitidis FAM18] gi|325128689|gb|EGC51555.1| hypothetical protein NMXN1568_0547 [Neisseria meningitidis N1568] gi|325132775|gb|EGC55457.1| hypothetical protein NMBM6190_0488 [Neisseria meningitidis M6190] gi|325136709|gb|EGC59309.1| hypothetical protein NMBM0579_0602 [Neisseria meningitidis M0579] gi|325138661|gb|EGC61217.1| hypothetical protein NMBES14902_0645 [Neisseria meningitidis ES14902] gi|325205640|gb|ADZ01093.1| conserved hypothetical protein [Neisseria meningitidis M04-240196] Length = 143 Score = 164 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 75/149 (50%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++++ + + + V L + L++F++++ G +T+ DC +S +S + VE Sbjct: 2 DIQTILEKTLPGLGYELVDFELTAQG--TLRVFIDKE-GGITVEDCATVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +I + LE+SSPG+DRP+ + +DF+R+ G + L ++ IGKI G Sbjct: 59 DI--DYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIDGQKNFIGKIEGCENDTV 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + + I ++ ARL Sbjct: 117 TVSFDGK--------TVQIELGNIDKARL 137 >gi|298369369|ref|ZP_06980687.1| hypothetical protein HMPREF9016_01039 [Neisseria sp. oral taxon 014 str. F0314] gi|298283372|gb|EFI24859.1| hypothetical protein HMPREF9016_01039 [Neisseria sp. oral taxon 014 str. F0314] Length = 157 Score = 164 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 40/149 (26%), Positives = 77/149 (51%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI +++ + + + V L + + L+IF++++ G +T+ DC +S +S + VE Sbjct: 16 DIQNILDKTLPGLGYELVDFELTAQGD--LRIFIDKE-GGITVEDCATVSNHLSRVFTVE 72 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +I + RLE+SSPG+DRP+ + +DF+R+ G + L ++ IG+I Sbjct: 73 DI--DYKRLEISSPGLDRPLKKAADFVRFAGRQAKIKTRLPIDGQKNFIGRIENCKNGTV 130 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + + I FD++ ARL Sbjct: 131 SISFDGKS--------VDIEFDNIDKARL 151 >gi|258404631|ref|YP_003197373.1| hypothetical protein Dret_0498 [Desulfohalobium retbaense DSM 5692] gi|257796858|gb|ACV67795.1| protein of unknown function DUF150 [Desulfohalobium retbaense DSM 5692] Length = 157 Score = 164 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 75/153 (49%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L +S +I+P+ + + + +L+++V+ +G +++ C LS+ IS L Sbjct: 5 LYERLSELIKPLAASCGLDVWGMEIPASRGGVLRVYVDSPNG-VSIDQCATLSRHISVTL 63 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ + G Y LEVSSPG++RP S + G VA ++ ++K G ++ Sbjct: 64 DVEDPLPGPYTLEVSSPGLERPFFTVSQLPPYIGQPVALKLQAPMQGRKKWRGVLIEAEG 123 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L D++ ++ +++ + ARL+ Sbjct: 124 DHLTL--------DVDGVEHVFAWEDVEKARLV 148 >gi|29375839|ref|NP_814993.1| hypothetical protein EF1270 [Enterococcus faecalis V583] gi|255973019|ref|ZP_05423605.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|255976058|ref|ZP_05426644.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|256618849|ref|ZP_05475695.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256762267|ref|ZP_05502847.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|256852912|ref|ZP_05558282.1| conserved hypothetical protein [Enterococcus faecalis T8] gi|256958758|ref|ZP_05562929.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|256962136|ref|ZP_05566307.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|256965335|ref|ZP_05569506.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|257078787|ref|ZP_05573148.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|257082769|ref|ZP_05577130.1| conserved hypothetical protein [Enterococcus faecalis E1Sol] gi|257085470|ref|ZP_05579831.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|257086617|ref|ZP_05580978.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|257089674|ref|ZP_05584035.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|257415888|ref|ZP_05592882.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG] gi|257419090|ref|ZP_05596084.1| conserved hypothetical protein [Enterococcus faecalis T11] gi|257422842|ref|ZP_05599832.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|294780120|ref|ZP_06745493.1| conserved hypothetical protein [Enterococcus faecalis PC1.1] gi|300859867|ref|ZP_07105955.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] gi|34222820|sp|Q835V2|RIMP_ENTFA RecName: Full=Ribosome maturation factor rimP gi|29343301|gb|AAO81063.1| conserved hypothetical protein [Enterococcus faecalis V583] gi|255964037|gb|EET96513.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|255968930|gb|EET99552.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|256598376|gb|EEU17552.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256683518|gb|EEU23213.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|256711371|gb|EEU26409.1| conserved hypothetical protein [Enterococcus faecalis T8] gi|256949254|gb|EEU65886.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|256952632|gb|EEU69264.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|256955831|gb|EEU72463.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|256986817|gb|EEU74119.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|256990799|gb|EEU78101.1| conserved hypothetical protein [Enterococcus faecalis E1Sol] gi|256993500|gb|EEU80802.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|256994647|gb|EEU81949.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|256998486|gb|EEU85006.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|257157716|gb|EEU87676.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG] gi|257160918|gb|EEU90878.1| conserved hypothetical protein [Enterococcus faecalis T11] gi|257164666|gb|EEU94626.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|294452795|gb|EFG21224.1| conserved hypothetical protein [Enterococcus faecalis PC1.1] gi|300850685|gb|EFK78434.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] gi|323480501|gb|ADX79940.1| conserved hypothetical protein [Enterococcus faecalis 62] Length = 157 Score = 164 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 81/156 (51%), Gaps = 8/156 (5%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++ ++ P++EE +F V++ ++E KN L++F++++ G + + +C +S+ +S L Sbjct: 5 VETVTKLVTPILEEQNFELVEVEFVKEGKNWFLRVFIDKE-GGIDIEECAFVSEKLSEKL 63 Query: 81 DV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 D + I Y LEVSSPG +RP+ ++SD+ + G + + + ++++ G ++ Sbjct: 64 DAMDPDPIPQAYFLEVSSPGAERPLKKESDYEQAVGKYIHISLYQAVDGEKQIEGTLVHL 123 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L + + ++ ++ ARL + Sbjct: 124 DSEQLTLSVKIKTRVK----EMTFERKNIAKARLAI 155 >gi|223044231|ref|ZP_03614268.1| 3-beta hydroxysteroid dehydrogenase/isomerase family protein [Staphylococcus capitis SK14] gi|222442381|gb|EEE48489.1| 3-beta hydroxysteroid dehydrogenase/isomerase family protein [Staphylococcus capitis SK14] Length = 155 Score = 164 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 78/155 (50%), Gaps = 6/155 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + ++IQP+++++ F V+I ++E K+ L++ ++++ G + L DC S+ IS Sbjct: 4 ITEQVETIIQPILDDLKFELVEIEYVKEGKDRFLRVSIDKE-GGVDLNDCTLASEKISEA 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +D + I Y L+V+SPG +RP+ + DF + + ++ +G + Sbjct: 63 MDENDPIPEMYYLDVASPGAERPIKKDKDFQNAVSQPIFVSLYAPIEGDKEWLGILKSVD 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E +++ + +I I + + AR V Sbjct: 123 EDNIVMEVKEKSKTK----EIEIPRNKIAKARHAV 153 >gi|251797401|ref|YP_003012132.1| hypothetical protein Pjdr2_3411 [Paenibacillus sp. JDR-2] gi|247545027|gb|ACT02046.1| protein of unknown function DUF150 [Paenibacillus sp. JDR-2] Length = 153 Score = 164 bits (415), Expect = 8e-39, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 72/151 (47%), Gaps = 10/151 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +++ P ++ F V I ++E N L++FV+++ G + + +C ++S+ +S LD Sbjct: 10 VEAMVTPFLDSNGFELVDIEYVKEGSNYFLRVFVDKE-GGIDIDECGKVSEFLSEELDKN 68 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + + Y LEVSSPG +RP+ + D + G V ++ G++ Sbjct: 69 DPVSDAYFLEVSSPGAERPLKKPDDVRKAVGKHVYITTYEPIDGSKEFEGQLTAFDGEQA 128 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ K+ + I + + SARL + Sbjct: 129 TVKIGKK--------EHVIPYAKVASARLAI 151 >gi|260583737|ref|ZP_05851485.1| conserved hypothetical protein [Granulicatella elegans ATCC 700633] gi|260158363|gb|EEW93431.1| conserved hypothetical protein [Granulicatella elegans ATCC 700633] Length = 157 Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 8/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 +A +S++ PVIE F V + ++E KN L+ ++++ G + L DC +S+ S + Sbjct: 4 VAELVSTLALPVIEAEGFELVDLEFVKEGKNWFLRFYLDKP-GGIDLDDCAFMSEKFSEL 62 Query: 80 LDVENI--IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD ++ I Y LEVSSPG +RP+ + D G V ++ L G + Sbjct: 63 LDAQDPDPIPQAYFLEVSSPGAERPLKTEKDLKEAIGQYVHLSFYQQVEGEKFLEGFLTE 122 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ LE + + K + I +++ ARL + Sbjct: 123 VTDESVTLEVKIKTRKKS----VTIVRENIAKARLAI 155 >gi|302872116|ref|YP_003840752.1| hypothetical protein COB47_1477 [Caldicellulosiruptor obsidiansis OB47] gi|302574975|gb|ADL42766.1| protein of unknown function DUF150 [Caldicellulosiruptor obsidiansis OB47] Length = 151 Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 43/155 (27%), Positives = 83/155 (53%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + +++P++E F V I +E K+ L++++++ G +T+ DC+ +S+ +S Sbjct: 4 ITKKVEELVKPILERYGFDLVDIEFKKEGKSHFLRVYIDKP-GGITIDDCQLVSEELSDK 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD+ + I Y LEVSSPG+DRP+V DF+R G VV + ++ K+ G+++ + Sbjct: 63 LDIADPIPFSYYLEVSSPGVDRPLVTDRDFIRNKGRVVDVFLKQPFLNRTKITGELVEKN 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E L +K I I +++ +L + Sbjct: 123 EKSLVLIVDKEK--------IDIPVENVKKVKLAI 149 >gi|254521461|ref|ZP_05133516.1| conserved hypothetical protein [Stenotrophomonas sp. SKA14] gi|219719052|gb|EED37577.1| conserved hypothetical protein [Stenotrophomonas sp. SKA14] Length = 196 Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 83/158 (52%), Gaps = 12/158 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVE-----RDDGNMTLRDCEELSQA 75 A DI++++ P + + + + L L+++++ + + + + DCE +S+ Sbjct: 5 ATDIANLLAPTVVSLGLELLGVEYLPAPGGATLRLYIDVPLAEQPERIINVDDCERVSRE 64 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +DVE+ I G+Y LEVSSPG+DRP+ F R G + + L ++++L G+I Sbjct: 65 VSAQMDVEDPISGNYTLEVSSPGVDRPLFNLEQFGRHLGEMAKVTLKLPQDNRRRLQGRI 124 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 T E + +++ ++ +S D++ AR++ Sbjct: 125 EATDEAADTITF------VVDKTEVIVSADNIDKARIM 156 >gi|289207908|ref|YP_003459974.1| hypothetical protein TK90_0723 [Thioalkalivibrio sp. K90mix] gi|288943539|gb|ADC71238.1| protein of unknown function DUF150 [Thioalkalivibrio sp. K90mix] Length = 151 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 73/151 (48%), Gaps = 10/151 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++ PV+E F + + L+I+++ +G +T+ DC +S+ +L+ Sbjct: 6 EQLKTLLAPVVEGQGFVFWGLEYHPGSKPVMLRIYIDSPEG-VTVDDCALVSEQAGAVLE 64 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE + G+Y LEVSSPGI+RP+ + + GH V + ++ G ++G E Sbjct: 65 VEQALRGNYTLEVSSPGIERPLFTPDQYRGYIGHPVKVRLSWPEHGRRNYRGTLIGVDEE 124 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +E + G + +++ +AR+ Sbjct: 125 MIEVEVDGTGY--------ELPLNAIHNARV 147 >gi|116492652|ref|YP_804387.1| hypothetical protein PEPE_0886 [Pediococcus pentosaceus ATCC 25745] gi|122265884|sp|Q03FS7|RIMP_PEDPA RecName: Full=Ribosome maturation factor rimP gi|116102802|gb|ABJ67945.1| hypothetical protein PEPE_0886 [Pediococcus pentosaceus ATCC 25745] Length = 158 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 76/158 (48%), Gaps = 8/158 (5%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISP 78 + ++ ++QP+ + +F V++ ++E L++++++ G + + +C +S +S Sbjct: 4 NVIEKVTELVQPITDRHNFELVEVEFVKEGQGWFLRVYIDKV-GGINIEECAMVSDELSE 62 Query: 79 ILDVENI--IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 ILD ++ I Y LEVSSPG +RP+ K D R G + + S ++ G + Sbjct: 63 ILDAQDPDPIPQAYFLEVSSPGAERPLKTKEDLTRSIGEYIHISLYASINKQKVFEGYLK 122 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L+ + ++ +++D + ARL + Sbjct: 123 SFENDEIVLDYLDKTRHK----ELKVTYDQVAFARLAI 156 >gi|90416133|ref|ZP_01224065.1| hypothetical protein GB2207_10663 [marine gamma proteobacterium HTCC2207] gi|90331858|gb|EAS47072.1| hypothetical protein GB2207_10663 [marine gamma proteobacterium HTCC2207] Length = 151 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 80/155 (51%), Gaps = 10/155 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + + +++QPV+E + + L K LL+I+++R+DG + + DCE +S+ Sbjct: 3 AVDSTLKALLQPVVEALDCELWGLELQSGGKRKLLRIYIDREDG-IGVEDCERVSRQSGS 61 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LDVE++I G Y LEVSSPG+DRP+ + + R+ G V+ + + ++ G+++G Sbjct: 62 VLDVEDVISGEYILEVSSPGMDRPLYELAQYERYIGEDVSLRLRFAYDGRRNFKGRLVGV 121 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + + + + + A ++ Sbjct: 122 DGDEIVL--------VVADTEYLFPVEGIDKANVV 148 >gi|121535259|ref|ZP_01667073.1| protein of unknown function DUF150 [Thermosinus carboxydivorans Nor1] gi|121306144|gb|EAX47072.1| protein of unknown function DUF150 [Thermosinus carboxydivorans Nor1] Length = 152 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 40/150 (26%), Positives = 77/150 (51%), Gaps = 9/150 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + ++Q +I + + V + ++E+N L++F+++ G + + DC+ +S+ + LD + Sbjct: 10 VERLVQDIITDTNMELVDVEYVKERNWYLRVFLDKP-GGIEVEDCQWVSEQLEVKLDELD 68 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I+ Y LEVSSPG+DRP+ + DF+R G V + ++G + G SET Sbjct: 69 PIKESYYLEVSSPGLDRPLKKDRDFIRHIGEKVEVHTFAPLNGSKLVVGTLTGISETDIH 128 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L D+N +++ D +L + Sbjct: 129 L--------DVNGTALSVPRDKTAQVKLYL 150 >gi|84624710|ref|YP_452082.1| hypothetical protein XOO_3053 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|161898973|ref|YP_201860.2| hypothetical protein XOO3221 [Xanthomonas oryzae pv. oryzae KACC10331] gi|91208349|sp|Q5GXU6|RIMP_XANOR RecName: Full=Ribosome maturation factor rimP gi|91208413|sp|Q2P0W9|RIMP_XANOM RecName: Full=Ribosome maturation factor rimP gi|259645271|sp|B2SVK5|RIMP_XANOP RecName: Full=Ribosome maturation factor rimP gi|84368650|dbj|BAE69808.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 196 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 77/157 (49%), Gaps = 12/157 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVE-----RDDGNMTLRDCEELSQA 75 A +I++++ P ++ + + + L L+++++ + + + + DCE +S+ Sbjct: 5 ATEIANLLSPTVDSLGVELLGVEYLPAPGGATLRLYIDVPLAEQPERVINVDDCERVSRE 64 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LDVE+ I GHY LEVSSPG+DRP+ F R G + L+ +++ G+I Sbjct: 65 VSAQLDVEDPISGHYTLEVSSPGVDRPLFTLEQFARHAGESTKIVLKLAQDGRRRFQGEI 124 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + ++ + I FD++ AR+ Sbjct: 125 LRIDAEA------GAVVFAIDGKDVQIGFDNIDKARI 155 >gi|56551453|ref|YP_162292.1| hypothetical protein ZMO0557 [Zymomonas mobilis subsp. mobilis ZM4] gi|241761100|ref|ZP_04759189.1| protein of unknown function DUF150 [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752934|ref|YP_003225827.1| hypothetical protein Za10_0696 [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|81355359|sp|Q5NQ24|RIMP_ZYMMO RecName: Full=Ribosome maturation factor rimP gi|56543027|gb|AAV89181.1| protein of unknown function DUF150 [Zymomonas mobilis subsp. mobilis ZM4] gi|241374719|gb|EER64180.1| protein of unknown function DUF150 [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552297|gb|ACV75243.1| protein of unknown function DUF150 [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 184 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 51/161 (31%), Positives = 90/161 (55%), Gaps = 10/161 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDD-GNMTLRDCEELSQAISPILDV 82 I+++++P ++ + V+I++ K + LQI ER D + L +CE LS+ +S I D Sbjct: 16 ITALVEPEVKALGLELVRIAMFGGKSDPTLQIMAERPDTRQIGLTECEALSRRLSEIFDE 75 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE-T 141 ++ IE YRLEVSSPGIDRP+ R+ D+ W G + +++ G+I+G + Sbjct: 76 QDPIEDAYRLEVSSPGIDRPLTRRKDYQDWKGFSARIRLSAPLDGRKQFDGEIIGIDDAD 135 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS 182 L+ K G+K + F ++ ++L++TD L+ A+ Sbjct: 136 NVILDCPKVGQKI-------LPFSAIERSKLLLTDALIAAT 169 >gi|158523047|ref|YP_001530917.1| hypothetical protein Dole_3037 [Desulfococcus oleovorans Hxd3] gi|158511873|gb|ABW68840.1| protein of unknown function DUF150 [Desulfococcus oleovorans Hxd3] Length = 181 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 40/168 (23%), Positives = 78/168 (46%), Gaps = 12/168 (7%) Query: 13 PRIFGDMG-LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVER--DDGNMTLRD 68 PR+ G + + +++PV V + +E + +L++++ D +TL D Sbjct: 18 PRLMGGGNPVVAQMWKLVEPVCSAEGMELVFVEFNKESQGRVLRLYLASGVPDRGVTLED 77 Query: 69 CEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 C +S+ ++ +LDV +Y LEVSS G++RP+ ++ DF R+ G V D+ Sbjct: 78 CAGISRQVNGLLDVYLPELDNYTLEVSSAGLERPLAKEIDFERFAGSRVKIRTAAPVSDR 137 Query: 129 QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 + G ++G S+ L + + I + + A+L+ D Sbjct: 138 KNFTGILLGVSDGNVRLMVDDK--------TFVIPYGEITRAKLVNED 177 >gi|254805396|ref|YP_003083617.1| hypothetical protein NMO_1459 [Neisseria meningitidis alpha14] gi|254668938|emb|CBA07181.1| conserved hypothetical protein [Neisseria meningitidis alpha14] gi|254669625|emb|CBA03670.1| conserved hypothetical protein [Neisseria meningitidis alpha153] gi|325201700|gb|ADY97154.1| conserved hypothetical protein [Neisseria meningitidis M01-240149] gi|325208564|gb|ADZ04016.1| conserved hypothetical protein [Neisseria meningitidis NZ-05/33] Length = 143 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 75/149 (50%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++++ + + + V L + L++F++++ G +T+ DC +S +S + VE Sbjct: 2 DIQTILEKTLPGLGYELVDFELTAQG--TLRVFIDKESG-ITVEDCATVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +I + LE+SSPG+DRP+ + +DF+R+ G + L ++ IGKI G Sbjct: 59 DI--DYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIDGQKNFIGKIEGCENDTV 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + + I ++ ARL Sbjct: 117 TISFDGK--------TVQIELGNIDKARL 137 >gi|146297078|ref|YP_001180849.1| hypothetical protein Csac_2073 [Caldicellulosiruptor saccharolyticus DSM 8903] gi|226701152|sp|A4XL73|RIMP_CALS8 RecName: Full=Ribosome maturation factor rimP gi|145410654|gb|ABP67658.1| protein of unknown function DUF150 [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 151 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 83/155 (53%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + +++P++E+ F V I +E K L++++++ G +T+ DC+ +S+ +S Sbjct: 4 VTKKVEELVKPILEKYGFDLVDIEFKKEGKKHFLRVYIDKP-GGITIDDCQLVSEELSNK 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD+ + I Y LEVSSPG+DRP+V DF+R G VV + + KL G+++ + Sbjct: 63 LDIVDPIPFSYYLEVSSPGVDRPLVNDRDFIRNKGRVVDVFLKQPIMNTTKLTGELVEKN 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E + + I+I F+++ ++ + Sbjct: 123 EDVLIIMIDGE--------NISIPFENVKKVKVAI 149 >gi|88812962|ref|ZP_01128205.1| hypothetical protein NB231_03777 [Nitrococcus mobilis Nb-231] gi|88789740|gb|EAR20864.1| hypothetical protein NB231_03777 [Nitrococcus mobilis Nb-231] Length = 150 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 85/157 (54%), Gaps = 10/157 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAIS 77 M ++ V++PV+ M + V I K+ LL+I++++ DG +++ DC +S IS Sbjct: 1 MTALDTLTKVVEPVVAAMGYELVGIEYRPSKSQALLRIYIDKADG-ISVEDCALVSNQIS 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ + G Y LEVSSPG+ RP+ + SD+ R+ G +V I + ++++ G + G Sbjct: 60 GVLDVEDPLSGRYTLEVSSPGLRRPIFKASDYERFAGELVHIRIRGTLDGRRRIHGLLRG 119 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + N ++I++ + + A L + Sbjct: 120 LRADCVIVVE--------NGIEISVPLNRVDKANLEL 148 >gi|317471573|ref|ZP_07930919.1| hypothetical protein HMPREF1011_01267 [Anaerostipes sp. 3_2_56FAA] gi|316900952|gb|EFV22920.1| hypothetical protein HMPREF1011_01267 [Anaerostipes sp. 3_2_56FAA] Length = 154 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 80/161 (49%), Gaps = 10/161 (6%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELS 73 + G + ++ P+I+E F V + ++E N L+I+ +++ G +++ DC +S Sbjct: 1 MAGKAEIEQKTEELVTPIIDENHFELVDVEYVKEGANWYLRIYADKE-GGISIDDCVLIS 59 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 +A+ LD ++ I+ Y LEVSSPG+ RP+ ++ DF R G V ++ + +++ G Sbjct: 60 RALEAKLDADDFIKDAYILEVSSPGLGRPLKKEKDFQRSIGQSVDIKLYKAIDKQKEFTG 119 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + S+ L + + S+ SARL + Sbjct: 120 ILKEYSKERIILSIDGTDQ--------EFETKSVASARLSL 152 >gi|153954052|ref|YP_001394817.1| hypothetical protein CKL_1427 [Clostridium kluyveri DSM 555] gi|219854665|ref|YP_002471787.1| hypothetical protein CKR_1322 [Clostridium kluyveri NBRC 12016] gi|189038691|sp|A5N838|RIMP_CLOK5 RecName: Full=Ribosome maturation factor rimP gi|254800038|sp|B9E1J8|RIMP_CLOK1 RecName: Full=Ribosome maturation factor rimP gi|146346933|gb|EDK33469.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555] gi|219568389|dbj|BAH06373.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 154 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 46/153 (30%), Positives = 78/153 (50%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 L + +I+P+++ ++F + E N L+IF+++++GN++L DCE +S+A+S I Sbjct: 6 LVERVLKLIKPIVDNLNFELYHLEFKREGNNNYLRIFIDKEEGNISLEDCEAVSRAVSDI 65 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD E+ I Y LEVSSPGI+R + R+ G V I K+K GK++ Sbjct: 66 LDREDPIRDPYYLEVSSPGIERTLYTHEHLKRYIGFNVIVNIQGLLKGKKKYQGKLLSFD 125 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 E+ + E +I I + + L Sbjct: 126 ESVLRVSCEGE--------EIVIPKSKISTVNL 150 >gi|295687484|ref|YP_003591177.1| hypothetical protein Cseg_0027 [Caulobacter segnis ATCC 21756] gi|295429387|gb|ADG08559.1| protein of unknown function DUF150 [Caulobacter segnis ATCC 21756] Length = 196 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 12/182 (6%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERD------DGNMTLR 67 + G D+ ++ PV E + + V++ L+ LQI E G+M + Sbjct: 1 MRGKTQEDRDLIEMLDPVAESLGYEIVRLRLMGGAEQRRLQIMAEHPLLEDGTGGDMNVE 60 Query: 68 DCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD 127 DC LS+ IS ILD + I G Y LEVSSPG+DRP+ R DF + G E+ + Sbjct: 61 DCARLSRGISEILDAADPIAGEYTLEVSSPGVDRPLTRLKDFEDYAGLEARIELDRVAEG 120 Query: 128 KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYG 187 +++ G++ G + L E +++ + F ++ A+L++TD L+ Sbjct: 121 RKRFKGELAGIEDDQVGLNIEGE-----DDVTVYFPFAWIIDAKLVMTDTLMDRGAKQRA 175 Query: 188 SY 189 + Sbjct: 176 AR 177 >gi|319896983|ref|YP_004135178.1| hypothetical protein HIBPF06790 [Haemophilus influenzae F3031] gi|317432487|emb|CBY80844.1| conserved hypothetical protein [Haemophilus influenzae F3031] Length = 141 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 76/147 (51%), Gaps = 10/147 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 ++Q +E++ I + +++F+++ DG +T+ DC ++S+ +S ILDVE+ I Sbjct: 1 MLQDAVEDLGCELWGIECQRMGRFMTVRLFIDK-DGGVTVDDCADVSRQVSAILDVEDPI 59 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE 146 Y LEVSSPG+DRP+ F R+ G +A + + +++K GK+ + L Sbjct: 60 ADKYNLEVSSPGLDRPLFTLPQFERYIGQDIAVHLRIPVMERRKWQGKLERIEKDMITLI 119 Query: 147 KEKRGEKDMNELQIAISFDSLLSARLI 173 + + + + F ++ A ++ Sbjct: 120 VDDQEQI--------LVFGNIQKANVV 138 >gi|229552420|ref|ZP_04441145.1| protein of hypothetical function DUF150 [Lactobacillus rhamnosus LMS2-1] gi|229314157|gb|EEN80130.1| protein of hypothetical function DUF150 [Lactobacillus rhamnosus LMS2-1] Length = 167 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 76/158 (48%), Gaps = 8/158 (5%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISP 78 + ++++++P++++ F + ++E L++++++ G +TL +C +S+A+S Sbjct: 13 SVVETVTALVKPILDDHHFYLTDVEFVKEGGGWYLRVYIDKP-GGITLDECVLVSEALSE 71 Query: 79 ILDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 LD + I Y LEVSSPG +RP+ R++D+ + G + + K+ G + Sbjct: 72 QLDAINPDPIPQQYFLEVSSPGAERPLKRETDYEQAIGDYIHVSLFKKLDGKKVFEGTLK 131 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L + + K I + SARL + Sbjct: 132 DLKPDQLTLTVKDKSRKFDQ----VIDRKLIASARLAI 165 >gi|323141192|ref|ZP_08076093.1| hypothetical protein HMPREF9443_00865 [Phascolarctobacterium sp. YIT 12067] gi|322414335|gb|EFY05153.1| hypothetical protein HMPREF9443_00865 [Phascolarctobacterium sp. YIT 12067] Length = 187 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 40/150 (26%), Positives = 78/150 (52%), Gaps = 1/150 (0%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 E ++ + I++++ P++++ V + + EK+ L+IF+++ G + + DC+ Sbjct: 26 EVKMMQAKEVEALITAMVDPLLQDTGLTLVDVEYVREKDWYLRIFLDKP-GGVEIDDCQM 84 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+ ++ ILD E+ I Y LEVSSPGIDRP+ + DF G V + L Sbjct: 85 VSEKLTEILDAEDPIPDKYFLEVSSPGIDRPLKKDKDFEAAYGTKVDIMFYTPWEGMKNL 144 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIA 161 G ++ + ++K +G++ N +I Sbjct: 145 TGILVAHDDEAVQVKKIIKGKEFKNPDRIE 174 >gi|288871536|ref|ZP_06117961.2| protein associated with NUS operon [Clostridium hathewayi DSM 13479] gi|288863081|gb|EFC95379.1| protein associated with NUS operon [Clostridium hathewayi DSM 13479] Length = 162 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 39/142 (27%), Positives = 71/142 (50%), Gaps = 2/142 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + P++EE F V + ++E N L+ +++++ G +T+ DCE +S+ + L Sbjct: 15 EKKTEDYLLPLMEEYHFELVDVEYVKEAGNWYLRAYIDKE-GGITVDDCEVVSRRLGDWL 73 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D ++ IE Y LEVSSPG+ RP+ + DF R G V ++ ++ G + + Sbjct: 74 DEKDFIEDSYILEVSSPGLGRPLKKDKDFDRSIGKDVDIKLYKPMNKQKDYTGTLKAYDK 133 Query: 141 TGFFLEKEKRGEKDMNELQIAI 162 + E E +N +IA+ Sbjct: 134 DTVTVTVEDGTELVLNRPEIAL 155 >gi|114331634|ref|YP_747856.1| hypothetical protein Neut_1648 [Nitrosomonas eutropha C91] gi|114308648|gb|ABI59891.1| protein of unknown function DUF150 [Nitrosomonas eutropha C91] Length = 160 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 84/166 (50%), Gaps = 14/166 (8%) Query: 11 YEPRIFGDMGLAGD---ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLR 67 +E + G + G+ + +++P I M + V I LL++FV++ DG +TL Sbjct: 3 FEGGLVGPFFICGEAMSLFELLEPTIAGMGYELVDIE-QSAPGRLLRVFVDKKDGAITLA 61 Query: 68 DCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD 127 DC +S + +L VENI + RLEVSSPG+DRP+ +++DF+R+ G + + ++ Sbjct: 62 DCVAVSNHLGQLLAVENI--DYNRLEVSSPGLDRPLKKRADFVRFVGESIRIRLRIALQG 119 Query: 128 KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 ++ +G + + L + + + +L ARLI Sbjct: 120 QRNFVGTLTEVGDDALMLNVDGK--------LLQFELKNLEKARLI 157 >gi|332686769|ref|YP_004456543.1| clustered with transcription termination protein NusA [Melissococcus plutonius ATCC 35311] gi|332370778|dbj|BAK21734.1| clustered with transcription termination protein NusA [Melissococcus plutonius ATCC 35311] Length = 157 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 78/158 (49%), Gaps = 8/158 (5%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + ++ ++ P++E+ F + + ++E K+ L++F+++ G + + +C +S+ +S Sbjct: 3 SIIETVTKLVTPILEKQQFELIDVEFIKEGKSWYLRVFIDKK-GGIDIEECAFVSEQLSE 61 Query: 79 ILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 LD + I Y LEVSSPG +RP+ + D+ G + + + ++ G + Sbjct: 62 QLDSLEPDPIPQAYFLEVSSPGAERPLKNEHDYFNAIGEYIHLSLYQAVEGIKQFEGILE 121 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + + ++ + I+ ++ ARL + Sbjct: 122 SIDEEQVVIEVKIKTQRK----KYIINRKNIAKARLAI 155 >gi|291562552|emb|CBL41368.1| Uncharacterized protein conserved in bacteria [butyrate-producing bacterium SS3/4] Length = 155 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 39/142 (27%), Positives = 71/142 (50%), Gaps = 2/142 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + P++EE +F V + ++E L+ +++++ G T+ DCE +S+ +S L Sbjct: 8 ESRVEKFLIPIMEENNFELVDVEYVKEAGTWYLRAYIDKE-GGFTVDDCEMVSRRLSDWL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D E+ I+ Y LEVSSPG+ RP+ ++ DF R G V ++ + ++ G + Sbjct: 67 DKEDFIDDSYILEVSSPGLGRPLKKEKDFKRSLGEAVDIKLYRAIERQKDFSGILTAYDA 126 Query: 141 TGFFLEKEKRGEKDMNELQIAI 162 + E E N IA+ Sbjct: 127 DTVTIRYEDGSENTFNRKDIAL 148 >gi|148244224|ref|YP_001218918.1| hypothetical protein COSY_0057 [Candidatus Vesicomyosocius okutanii HA] gi|166919105|sp|A5CXX4|RIMP_VESOH RecName: Full=Ribosome maturation factor rimP gi|146326051|dbj|BAF61194.1| conserved hypothetical protein [Candidatus Vesicomyosocius okutanii HA] Length = 153 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 8/155 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I+ +I+PVIE M + + I + K +L+IF++ + ++++ DCE +S+ +S I Sbjct: 4 VTDKITHLIKPVIEGMGYELLGIEYVASGKYSILRIFIDT-NKSISVNDCEIVSRQLSSI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 D+E I G Y LEVSSPGI+RP+ K + + G V + + G I S Sbjct: 63 FDIEEPISGQYNLEVSSPGIERPLFHKGHYQCFLGFNVKLHMFRPISGQSNFFGVIGSVS 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E I + D + A L+V Sbjct: 123 EINNTIELVGE------LGAIILDIDLIKKANLVV 151 >gi|163791588|ref|ZP_02185989.1| hypothetical protein CAT7_03409 [Carnobacterium sp. AT7] gi|159873137|gb|EDP67240.1| hypothetical protein CAT7_03409 [Carnobacterium sp. AT7] Length = 157 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 71/155 (45%), Gaps = 8/155 (5%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISP 78 + ++ ++QP++E F V I ++E N L++++++ +G + L DC +S+ IS Sbjct: 3 NVVETVTEIVQPIVERNQFELVDIEFVKEGQNWFLRVYIDKPEG-IDLEDCALVSEQISQ 61 Query: 79 ILDVENI--IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 +D + I Y LEVSSPG +RP+ ++ D+ G + + ++ G + Sbjct: 62 HMDKIDPDPIPQAYFLEVSSPGAERPLKKEQDYTDSIGEYIHISLYEPVDGEKVYEGTLK 121 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 ++ L + I S + AR Sbjct: 122 EVNDETLTLTIRVKTRVK----DIDFSRKIIAKAR 152 >gi|153004005|ref|YP_001378330.1| hypothetical protein Anae109_1138 [Anaeromyxobacter sp. Fw109-5] gi|259585695|sp|A7H9F0|RIMP_ANADF RecName: Full=Ribosome maturation factor rimP gi|152027578|gb|ABS25346.1| protein of unknown function DUF150 [Anaeromyxobacter sp. Fw109-5] Length = 171 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 79/165 (47%), Gaps = 17/165 (10%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQ 74 + +A V++PV+ + V++ L + L++FV++ G + + DC+ +S+ Sbjct: 4 IAEESIAERTRRVLEPVLARDGYELVEVEWLRQGSRWTLRLFVDKP-GGVGIEDCQAVSR 62 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD------- 127 + PILDVE+ IE Y LEVSSPG+DRP+ + +DF R+ G + Sbjct: 63 LVDPILDVEDFIEPAYDLEVSSPGLDRPLRKPADFDRYAGQRAHVKAYGPVAGTAPGSPA 122 Query: 128 KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ G ++G + + D++ + + D + A L Sbjct: 123 RKNWTGVLVGYRDGAVEI--------DVDGVVHRVPHDQIAKAHL 159 >gi|118602110|ref|YP_903325.1| hypothetical protein Rmag_0052 [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|166919103|sp|A1AV97|RIMP_RUTMC RecName: Full=Ribosome maturation factor rimP gi|118567049|gb|ABL01854.1| protein of unknown function DUF150 [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 154 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 7/155 (4%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I+ +I+ VI++M + V I + K+ +L++F++ D + + DCE++S+ +S I Sbjct: 4 VTDKITHLIELVIKDMCYELVGIEYVASGKHSILRVFIDTDKKGVGVNDCEKVSRQLSSI 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 DVE I G Y LEVSSPGI+RP+ K + R+ G V +V ++ G I + Sbjct: 64 FDVEEPISGQYTLEVSSPGIERPLFHKEHYQRFLGANVKLRMVRPIDGRRNFFGVIGCVN 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E E + + + D + A L+V Sbjct: 124 EADNTFELVGELDL------VILDIDLIEKANLVV 152 >gi|316984983|gb|EFV63937.1| conserved hypothetical protein [Neisseria meningitidis H44/76] gi|319410894|emb|CBY91288.1| conserved hypothetical protein [Neisseria meningitidis WUE 2594] gi|325130690|gb|EGC53430.1| hypothetical protein NMBOX9930304_0543 [Neisseria meningitidis OX99.30304] gi|325140714|gb|EGC63228.1| hypothetical protein NMBCU385_0550 [Neisseria meningitidis CU385] gi|325144893|gb|EGC67180.1| hypothetical protein NMBM01240013_0663 [Neisseria meningitidis M01-240013] gi|325199765|gb|ADY95220.1| conserved hypothetical protein [Neisseria meningitidis H44/76] gi|325204602|gb|ADZ00056.1| conserved hypothetical protein [Neisseria meningitidis M01-240355] Length = 143 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 75/149 (50%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++++ + + + V L + L++F++++ G +T+ DC +S +S + VE Sbjct: 2 DIQTILEKTLPGLGYELVDFELTAQG--TLRVFIDKESG-ITVEDCATVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +I + LE+SSPG+DRP+ + +DF+R+ G + L ++ IGKI G Sbjct: 59 DI--DYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIDGQKNFIGKIEGCENDTV 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + + I ++ ARL Sbjct: 117 TVSFDGK--------TVQIELGNIDKARL 137 >gi|154485018|ref|ZP_02027466.1| hypothetical protein EUBVEN_02736 [Eubacterium ventriosum ATCC 27560] gi|149733971|gb|EDM50090.1| hypothetical protein EUBVEN_02736 [Eubacterium ventriosum ATCC 27560] Length = 147 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 39/144 (27%), Positives = 80/144 (55%), Gaps = 2/144 (1%) Query: 26 SSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++I P+++E F V + ++E N L+ +V+++ G +T+ D E +S+ +S LD E+ Sbjct: 4 EALITPIVDEKGFELVDVEYVKEGSNWYLRAYVDKE-GGITINDLESVSRILSDKLDEED 62 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I Y LEVSSPG+ RP+ + DF R G+ + + + +++L+G + + Sbjct: 63 FISDAYILEVSSPGLGRPLKKDKDFDRNMGNEIEVHLYRAVDRQKQLVGLLKAYNADTIT 122 Query: 145 LEKEKRGEKDMNELQIAISFDSLL 168 +E E E D++ + +++ ++ Sbjct: 123 IENEDGSETDIDRVNVSLVRPTID 146 >gi|217967592|ref|YP_002353098.1| protein of unknown function DUF150 [Dictyoglomus turgidum DSM 6724] gi|259585754|sp|B8E2Y4|RIMP_DICTD RecName: Full=Ribosome maturation factor rimP gi|217336691|gb|ACK42484.1| protein of unknown function DUF150 [Dictyoglomus turgidum DSM 6724] Length = 156 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 48/157 (30%), Positives = 82/157 (52%), Gaps = 10/157 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 M L + +++P+ E+ S+ V + E +L++++++ G +T+ DC +S+ IS Sbjct: 7 MELLKKLKDIVEPICEKYSYELVDLEYRREPHGWVLRVYIDKV-GGVTVEDCAYISEKIS 65 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD+++ I Y LEVSSPG+DRP+ RK DF R G V ++ K+K+ GKI Sbjct: 66 KELDIKDPIPHSYILEVSSPGLDRPLKRKRDFERHIGEKVNITLLEEIEGKKKVEGKIFK 125 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E L +++ + I + + A LIV Sbjct: 126 VDEKNVTL--------KVDDSLMVIPIEKIKKALLIV 154 >gi|194366590|ref|YP_002029200.1| hypothetical protein Smal_2817 [Stenotrophomonas maltophilia R551-3] gi|226701526|sp|B4SQS2|RIMP_STRM5 RecName: Full=Ribosome maturation factor rimP gi|194349394|gb|ACF52517.1| protein of unknown function DUF150 [Stenotrophomonas maltophilia R551-3] Length = 196 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 80/158 (50%), Gaps = 12/158 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVE-----RDDGNMTLRDCEELSQA 75 A DI++++ P + + + + L L+++++ + + + + DCE +S+ Sbjct: 5 ATDIANLLAPTVVSLGLELLGVEYLPAPGGATLRLYIDVPLAEQPERIINVDDCERVSRE 64 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +DVE+ I G+Y LEVSSPG+DRP+ F R G + L ++++L G+I Sbjct: 65 VSAQMDVEDPISGNYTLEVSSPGVDRPLFNLEQFGRHLGESAKVTLKLPQDNRRRLQGRI 124 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 E +++ ++ +S D++ AR++ Sbjct: 125 EAIDEAA------GAITFIVDKAEVVVSADNIDKARIM 156 >gi|15924255|ref|NP_371789.1| hypothetical protein SAV1265 [Staphylococcus aureus subsp. aureus Mu50] gi|15926848|ref|NP_374381.1| hypothetical protein SA1108 [Staphylococcus aureus subsp. aureus N315] gi|148267755|ref|YP_001246698.1| hypothetical protein SaurJH9_1325 [Staphylococcus aureus subsp. aureus JH9] gi|150393814|ref|YP_001316489.1| hypothetical protein SaurJH1_1351 [Staphylococcus aureus subsp. aureus JH1] gi|156979586|ref|YP_001441845.1| hypothetical protein SAHV_1255 [Staphylococcus aureus subsp. aureus Mu3] gi|253315621|ref|ZP_04838834.1| hypothetical protein SauraC_05652 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253733497|ref|ZP_04867662.1| protein of hypothetical function DUF150 [Staphylococcus aureus subsp. aureus TCH130] gi|255006052|ref|ZP_05144653.2| hypothetical protein SauraM_06265 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795679|ref|ZP_05644658.1| conserved hypothetical protein [Staphylococcus aureus A9781] gi|258416082|ref|ZP_05682350.1| conserved hypothetical protein [Staphylococcus aureus A9763] gi|258421665|ref|ZP_05684589.1| conserved hypothetical protein [Staphylococcus aureus A9719] gi|258434821|ref|ZP_05688895.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|258444603|ref|ZP_05692932.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|258447564|ref|ZP_05695708.1| hypothetical protein SAIG_00219 [Staphylococcus aureus A6300] gi|258449406|ref|ZP_05697509.1| hypothetical protein SAHG_00482 [Staphylococcus aureus A6224] gi|258454785|ref|ZP_05702749.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|269202882|ref|YP_003282151.1| hypothetical protein SAAV_1240 [Staphylococcus aureus subsp. aureus ED98] gi|282892753|ref|ZP_06300988.1| hypothetical protein SGAG_00108 [Staphylococcus aureus A8117] gi|282927607|ref|ZP_06335223.1| conserved hypothetical protein [Staphylococcus aureus A10102] gi|295406202|ref|ZP_06816009.1| UPF0090 protein [Staphylococcus aureus A8819] gi|296274823|ref|ZP_06857330.1| hypothetical protein SauraMR_00705 [Staphylococcus aureus subsp. aureus MR1] gi|297244430|ref|ZP_06928313.1| hypothetical protein SLAG_00512 [Staphylococcus aureus A8796] gi|54040041|sp|P67221|RIMP_STAAN RecName: Full=Ribosome maturation factor rimP gi|54042669|sp|P67220|RIMP_STAAM RecName: Full=Ribosome maturation factor rimP gi|166977846|sp|A7X1P6|RIMP_STAA1 RecName: Full=Ribosome maturation factor rimP gi|189038661|sp|A5ISE9|RIMP_STAA9 RecName: Full=Ribosome maturation factor rimP gi|189038668|sp|A6U184|RIMP_STAA2 RecName: Full=Ribosome maturation factor rimP gi|13701065|dbj|BAB42360.1| conserved hypotehtical protein [Staphylococcus aureus subsp. aureus N315] gi|14247035|dbj|BAB57427.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] gi|147740824|gb|ABQ49122.1| protein of unknown function DUF150 [Staphylococcus aureus subsp. aureus JH9] gi|149946266|gb|ABR52202.1| protein of unknown function DUF150 [Staphylococcus aureus subsp. aureus JH1] gi|156721721|dbj|BAF78138.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|253728551|gb|EES97280.1| protein of hypothetical function DUF150 [Staphylococcus aureus subsp. aureus TCH130] gi|257789651|gb|EEV27991.1| conserved hypothetical protein [Staphylococcus aureus A9781] gi|257839230|gb|EEV63706.1| conserved hypothetical protein [Staphylococcus aureus A9763] gi|257842351|gb|EEV66776.1| conserved hypothetical protein [Staphylococcus aureus A9719] gi|257849182|gb|EEV73164.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|257850096|gb|EEV74049.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|257853755|gb|EEV76714.1| hypothetical protein SAIG_00219 [Staphylococcus aureus A6300] gi|257857394|gb|EEV80292.1| hypothetical protein SAHG_00482 [Staphylococcus aureus A6224] gi|257863168|gb|EEV85932.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|262075172|gb|ACY11145.1| hypothetical protein SAAV_1240 [Staphylococcus aureus subsp. aureus ED98] gi|282590610|gb|EFB95687.1| conserved hypothetical protein [Staphylococcus aureus A10102] gi|282764750|gb|EFC04875.1| hypothetical protein SGAG_00108 [Staphylococcus aureus A8117] gi|285816947|gb|ADC37434.1| clustered with transcription termination protein NusA [Staphylococcus aureus 04-02981] gi|294968790|gb|EFG44812.1| UPF0090 protein [Staphylococcus aureus A8819] gi|297178460|gb|EFH37706.1| hypothetical protein SLAG_00512 [Staphylococcus aureus A8796] gi|312829659|emb|CBX34501.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315131059|gb|EFT87043.1| hypothetical protein CGSSa03_05939 [Staphylococcus aureus subsp. aureus CGS03] gi|329727532|gb|EGG63988.1| hypothetical protein SA21172_0119 [Staphylococcus aureus subsp. aureus 21172] Length = 155 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 77/155 (49%), Gaps = 6/155 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + ++QP++E+++F V + ++E ++ L+I ++++ G + L DC S+ IS Sbjct: 4 ITEQVEVIVQPIMEDLNFELVDVEYVKEGRDHFLRISIDKE-GGVDLNDCTLASEKISEA 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +D + I Y L+V+SPG +RP+ ++ DF V + + +++ +G + + Sbjct: 63 MDANDPIPEMYYLDVASPGAERPIKKEQDFQNAITKPVFVSLYVPIEGEKEWLGILQEVN 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ + + I I D + AR V Sbjct: 123 NETIVVQVKIKARTK----DIEIPRDKIAKARHAV 153 >gi|331007795|ref|ZP_08330908.1| clustered with transcription termination protein NusA [gamma proteobacterium IMCC1989] gi|330418394|gb|EGG92947.1| clustered with transcription termination protein NusA [gamma proteobacterium IMCC1989] Length = 163 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 82/166 (49%), Gaps = 20/166 (12%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVER-----------DDGNMTLR 67 + ++++I+PV+E + + + ++ + L+I++E+ + + L Sbjct: 3 SVQNKLTALIEPVVESLGCQLWGLEYLVQGRQATLRIYIEKAADSESSDDTKKESGVGLH 62 Query: 68 DCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD 127 DCE++S+ +S +LDVE+ I HY LEVSSPG+DRP+ + + G V+ ++ D Sbjct: 63 DCEKVSRQVSSVLDVEDPISSHYTLEVSSPGMDRPLFLLAHYHSSVGEKVSIKLSRKFDD 122 Query: 128 KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 ++ IG I G + L E E + + + + A +I Sbjct: 123 RKNFIGVIAGVEDDEVILRVE--------EEEYVLPIELIDKANII 160 >gi|304384866|ref|ZP_07367212.1| protein of hypothetical function DUF150 [Pediococcus acidilactici DSM 20284] gi|304329060|gb|EFL96280.1| protein of hypothetical function DUF150 [Pediococcus acidilactici DSM 20284] Length = 168 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 74/158 (46%), Gaps = 8/158 (5%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISP 78 + I+ + +PVIE F+ V++ ++E L+ ++++ G + + +C +S +S Sbjct: 14 NVVEKITELARPVIESHDFQLVEVEFVKEGQGWFLRFYIDKV-GGINIEECAMVSDELSE 72 Query: 79 ILDVENI--IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 +LD ++ I Y LEVSSPG +RP+ K D G + + S ++ G + Sbjct: 73 LLDQQDPDPIPQAYFLEVSSPGAERPLKTKEDLAAAVGEYIHISLYASINKQKVFEGYLK 132 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L+ + ++ ++++ + ARL + Sbjct: 133 SFENDELVLDYLDKTRHK----ELKVAYNQVAFARLAI 166 >gi|119504357|ref|ZP_01626437.1| hypothetical protein MGP2080_00755 [marine gamma proteobacterium HTCC2080] gi|119459865|gb|EAW40960.1| hypothetical protein MGP2080_00755 [marine gamma proteobacterium HTCC2080] Length = 166 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 73/154 (47%), Gaps = 10/154 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 G +S ++ P +E + F + LL + L++F+E D G +++ DC ++S+ + Sbjct: 3 GKESRLSELLTPTVESLGFELWGLELLSPNRRPTLRLFIEGDTG-VSVDDCAKVSRHVGG 61 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LDVE+ I G Y LEVSSPGIDR + + + + G + ++ +++ G +MG Sbjct: 62 VLDVEDPISGDYTLEVSSPGIDRLLFKVDQYGLYIGEPIEVKLRFPFEGRRRFRGWLMGI 121 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + E + + AR+ Sbjct: 122 EGEDVVVRVEDHDYL--------LPLKQIDRARV 147 >gi|259586208|sp|Q086H4|RIMP_SHEFN RecName: Full=Ribosome maturation factor rimP Length = 151 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 74/154 (48%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + ++ +E + F+ I ++ ++ +L++F++ ++G + + DC E S+ +S + Sbjct: 4 IESKLVEMLTVPVEALGFKLWGIEYIQAGRHSILRVFIDHENG-INIEDCAEASRQVSAV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +DVE+ I Y LEVSSPG+DRP+ + + G ++ + + L G I Sbjct: 63 MDVEDPISTEYTLEVSSPGVDRPLFTAEQYRAYIGEETKVQLTMPVAGSRNLKGVISSVD 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + + ++ D++ +I Sbjct: 123 GQMLTITVDGK--------DLIVALDNIRKGNVI 148 >gi|51473735|ref|YP_067492.1| hypothetical protein RT0541 [Rickettsia typhi str. Wilmington] gi|81390042|sp|Q68WI2|RIMP_RICTY RecName: Full=Ribosome maturation factor rimP gi|51460047|gb|AAU04010.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington] Length = 161 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 87/164 (53%), Gaps = 9/164 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-MTLRDCEELSQAISPI 79 + I+++I+ + +M F V + +++I ++ +GN +++ DC +S+ IS I Sbjct: 4 IEQQITNIIEESLTDMGFELVLVKFKGVNTKVVEILIDSLNGNKISIEDCTNVSRTISAI 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE++IE Y LEVSS GI+R +V+ ++ R+ G V ++ K GKI+ Sbjct: 64 LDVEDLIEDAYSLEVSSSGIERKLVKFENYNRFLGREVKVKLKALLNGKTLYQGKIIKAE 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 +L E ++ I F+ + +A L++T+E+ + L Sbjct: 124 NNKIYL--------KCAEQEVLIDFNLIKNANLVLTEEVFKKLL 159 >gi|103486102|ref|YP_615663.1| hypothetical protein Sala_0609 [Sphingopyxis alaskensis RB2256] gi|123380087|sp|Q1GVJ2|RIMP_SPHAL RecName: Full=Ribosome maturation factor rimP gi|98976179|gb|ABF52330.1| protein of unknown function DUF150 [Sphingopyxis alaskensis RB2256] Length = 181 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 87/166 (52%), Gaps = 14/166 (8%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDD-GNMTLRDCEELSQAISPILDV 82 + ++I P E M V+++ + LQ+ ER D +T+ DC +LS+ IS LD Sbjct: 7 LHAIIAPEAEAMGLALVRVAFFGGDSDPTLQVMAERPDTRQLTIDDCADLSRRISDRLDA 66 Query: 83 -----ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++ I+ YRLEVSSPGIDRP+ R +DF W GH + +Q+ G ++G Sbjct: 67 LEEAGQDPIDVAYRLEVSSPGIDRPLTRPADFADWAGHEAKIALKEKLDGRQRFNGTLVG 126 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 + ++ ++ + F ++ +A+L++TD+L+ A++ Sbjct: 127 IDGDVVTISDKE-------GVEHKLPFGAIDTAKLVLTDKLIAATV 165 >gi|227510251|ref|ZP_03940300.1| protein of hypothetical function DUF150 [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227513180|ref|ZP_03943229.1| protein of hypothetical function DUF150 [Lactobacillus buchneri ATCC 11577] gi|227524395|ref|ZP_03954444.1| protein of hypothetical function DUF150 [Lactobacillus hilgardii ATCC 8290] gi|227083561|gb|EEI18873.1| protein of hypothetical function DUF150 [Lactobacillus buchneri ATCC 11577] gi|227088626|gb|EEI23938.1| protein of hypothetical function DUF150 [Lactobacillus hilgardii ATCC 8290] gi|227189903|gb|EEI69970.1| protein of hypothetical function DUF150 [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 157 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 77/158 (48%), Gaps = 8/158 (5%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + + V++P++++ +F + ++E K+ L++++++ G +T+ DC +S +S Sbjct: 3 NVVETVKQVVKPILDKHTFYLFDVEFVKENKSWYLRVYIDKK-GGITIDDCVLVSDELSE 61 Query: 79 ILDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 LD + I Y LEVSSPG +RP+ + + G + + + ++ G + Sbjct: 62 KLDEMDPDPIPQQYFLEVSSPGAERPLRNDEELQQAVGEYIHISLYQNLNGQKAFEGFLR 121 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + L+ +K G+ D I I + + +RL + Sbjct: 122 SVTSDELVLQNDKWGKND----TINIPRNLIAKSRLAI 155 >gi|34223001|sp|Q9AC22|RIMP_CAUCR RecName: Full=Ribosome maturation factor rimP Length = 178 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 48/169 (28%), Positives = 84/169 (49%), Gaps = 12/169 (7%) Query: 28 VIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERD------DGNMTLRDCEELSQAISPIL 80 ++ PV E + + V++ L+ + LQI E G+M + DC +LS+A+S +L Sbjct: 1 MLDPVAESLGYEIVRLRLMGGTEQRRLQIMAEHPLLEDGSGGDMNVEDCAKLSRAVSEVL 60 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D + I G Y LEVSSPGIDRP+ R DF + G E+ + +++ G++ G + Sbjct: 61 DAADPIAGEYTLEVSSPGIDRPLTRLKDFDDYAGLEARIELDRVAEGRKRFKGELAGVED 120 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSY 189 L E +++ + F ++ A+L++TD L+ + Sbjct: 121 DQVGLNIEGE-----DDVTVYFPFAWVIDAKLVMTDALMERGAKQRAAR 164 >gi|329847355|ref|ZP_08262383.1| hypothetical protein ABI_04190 [Asticcacaulis biprosthecum C19] gi|328842418|gb|EGF91987.1| hypothetical protein ABI_04190 [Asticcacaulis biprosthecum C19] Length = 205 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 11/172 (6%) Query: 24 DISSVIQPVIEEMSFRSVQISLLE----EKNLLLQIFVERD-DGNMTLRDCEELSQAISP 78 + + P+ E+ V++ L+ LQI ER DG + + C LS+A+S Sbjct: 10 KLIDIFDPIANELGLNIVRVRLMGSNKPGGARRLQIMAERQSDGEINVNQCARLSRALSA 69 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LD + I G Y LEVSSPGIDRP+ R DF + G+ E+ + +++ G + G Sbjct: 70 FLDEADPISGDYVLEVSSPGIDRPLTRLKDFETYQGYEARIELDRLAEGRKRFRGTLAGV 129 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 ++ E E + + F ++ A+L++TDEL++ + Sbjct: 130 EGDHIAIDLEGEPETAL------MPFAWVIDAKLVLTDELMKRGAEMRANRG 175 >gi|312793235|ref|YP_004026158.1| hypothetical protein Calkr_1037 [Caldicellulosiruptor kristjanssonii 177R1B] gi|312876953|ref|ZP_07736928.1| protein of unknown function DUF150 [Caldicellulosiruptor lactoaceticus 6A] gi|311796268|gb|EFR12622.1| protein of unknown function DUF150 [Caldicellulosiruptor lactoaceticus 6A] gi|312180375|gb|ADQ40545.1| protein of unknown function DUF150 [Caldicellulosiruptor kristjanssonii 177R1B] Length = 151 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 82/155 (52%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + +++P++E+ F V I +E L++++++ G +T+ DC+ +S+ +S Sbjct: 4 ITKKVEELVKPILEKYGFDLVDIEFKKEGRSYFLRVYIDKP-GGITIDDCQLVSEELSEK 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD+ + I Y LEVSSPG+DRP+V DF+R G VV + ++ K+ G+++ + Sbjct: 63 LDIVDPIPFSYYLEVSSPGVDRPLVTDRDFIRNRGRVVDVFLNQPFLNRTKITGELVEKN 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E L +K I I +++ +L + Sbjct: 123 EKSLVLIVDKEK--------IDIPVENIKKVKLAI 149 >gi|126253833|sp|Q1RIX2|RIMP_RICBR RecName: Full=Ribosome maturation factor rimP gi|259586219|sp|A8GW29|RIMP_RICB8 RecName: Full=Ribosome maturation factor rimP Length = 168 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 48/164 (29%), Positives = 92/164 (56%), Gaps = 9/164 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVER-DDGNMTLRDCEELSQAISPI 79 + I+ +IQ + +M F V + + + +++I ++R DD +T+ DC + S IS I Sbjct: 4 IEQQITDLIQETLSDMGFELVLVRVKGLSSKVVEILIDRLDDQKVTIEDCTKASNTISAI 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE++IE Y LEVSS G++RP+V+ ++ R+ G V ++ + + G I+ Sbjct: 64 LDVEDLIEEAYYLEVSSSGVERPLVKFENYKRFIGREVKIKLKELLNGRSRYQGTIIEAK 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 + +L+ E + ++ I++D + SA L++T+E+ + L Sbjct: 124 DDKVYLKWEDQ--------EVIINYDLIKSANLVLTEEMFKKLL 159 >gi|314933444|ref|ZP_07840809.1| conserved hypothetical protein [Staphylococcus caprae C87] gi|313653594|gb|EFS17351.1| conserved hypothetical protein [Staphylococcus caprae C87] Length = 155 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 79/155 (50%), Gaps = 6/155 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + ++IQP+++++ F V+I ++E K+ L++ ++++ G + L DC S+ IS Sbjct: 4 ITEQVETIIQPILDDLKFELVEIEYVKEGKDRFLRVSIDKE-GGVDLNDCTLASEKISEA 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +D + I Y L+V+SPG +RP+ ++ DF + + ++ +G + Sbjct: 63 MDENDPIPEMYYLDVASPGAERPIKKEKDFQNAVSQPIFVSLYAPIEGDKEWLGILKSVD 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E +++ + +I I + + AR V Sbjct: 123 EENIVMEVKEKSKTK----EIEIPRNKIAKARYAV 153 >gi|312127898|ref|YP_003992772.1| hypothetical protein Calhy_1688 [Caldicellulosiruptor hydrothermalis 108] gi|311777917|gb|ADQ07403.1| protein of unknown function DUF150 [Caldicellulosiruptor hydrothermalis 108] Length = 151 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 43/155 (27%), Positives = 83/155 (53%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + +++P++E F V I +E K+ L++++++ G +T+ DC+ +S+ +S Sbjct: 4 ITKKVEELVKPILERYGFDLVDIEFKKEGKSYFLRVYIDKP-GGITIDDCQLVSEELSEK 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD+ + I Y LEVSSPG+DRP+V DF+R G VV + ++ K+ G+++ + Sbjct: 63 LDIVDPIPFSYYLEVSSPGVDRPLVTDRDFVRNRGRVVDVFLNQPFLNRTKITGELVEKN 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E L +K I I +++ +L + Sbjct: 123 EKSLVLIVDKEK--------IDIPVENIKKVKLAI 149 >gi|240116050|ref|ZP_04730112.1| hypothetical protein NgonPID1_07356 [Neisseria gonorrhoeae PID18] gi|260440136|ref|ZP_05793952.1| hypothetical protein NgonDG_03444 [Neisseria gonorrhoeae DGI2] Length = 143 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 76/149 (51%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++++ + + + L + L++F++++ G +T+ DC +S +S + VE Sbjct: 2 DIQTILEKTLPGLGYELADFELAAQG--TLRVFIDKE-GGITVEDCATVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +I G+ LE+SSPG+DRP+ + +DF+R+ G + L G ++ IGKI G Sbjct: 59 DI--GYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIGGQKNFIGKIEGCENDTV 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + + I ++ ARL Sbjct: 117 TVSFDGK--------TVQIELGNIDKARL 137 >gi|85712988|ref|ZP_01044026.1| Alpha-hemolysin-like protein, hlyA family protein [Idiomarina baltica OS145] gi|85693157|gb|EAQ31117.1| Alpha-hemolysin-like protein, hlyA family protein [Idiomarina baltica OS145] Length = 167 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 77/156 (49%), Gaps = 10/156 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 + +S +++P +E + F I + L+I++++++G +++ DC ++S +S + Sbjct: 19 IEERLSDMLRPAVEALGFELWGIEFVRAGKFSTLRIYIDKEEG-ISVDDCADVSYQVSSV 77 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG++RP + + G VA E+ ++ +K+K + G Sbjct: 78 LDVEDPINTEYNLEVSSPGMERPFFSIAQMQPYIGETVAFELTVAKQNKRKFQAVLEGIE 137 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 L + + + + + A L+ + Sbjct: 138 NDQLQL--------SVGQESLTVGMHEIKKAHLVPS 165 >gi|292572171|gb|ADE30086.1| hypothetical protein rpr22_CDS533 [Rickettsia prowazekii Rp22] Length = 161 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 89/164 (54%), Gaps = 9/164 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-MTLRDCEELSQAISPI 79 +A I+++I+ + +M F V + ++++ ++ +GN +++ DC +S+ IS I Sbjct: 4 IAQQITNIIEESLTDMGFELVLVKFKGVSPKVVEVLIDSLNGNKISIEDCTNVSRTISAI 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE++IE Y LEVSS GI+R +V+ ++ R+ G V ++ K GKI+ Sbjct: 64 LDVEDLIEEAYSLEVSSSGIERTLVKFENYNRFLGREVKIKLKELLNGKTLYQGKIIKAE 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 +L E +++I F+ + +A L++T+E+ + L Sbjct: 124 NNKIYL--------KCAEQEVSIDFNLIRNANLVLTEEVFKKLL 159 >gi|312622704|ref|YP_004024317.1| hypothetical protein Calkro_1646 [Caldicellulosiruptor kronotskyensis 2002] gi|312203171|gb|ADQ46498.1| protein of unknown function DUF150 [Caldicellulosiruptor kronotskyensis 2002] Length = 151 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 83/155 (53%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + +++P++E F V I +E K+ L++++++ G +T+ DC+ +S+ +S Sbjct: 4 ITKKVEELVKPILERYGFDLVDIEFKKEGKSHFLRVYIDKP-GGITIDDCQLVSEELSEK 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD+ + I Y LEVSSPG+DRP+V DF+R G VV + ++ ++ G+++ + Sbjct: 63 LDIVDPIPFSYYLEVSSPGVDRPLVTDRDFIRNKGKVVDVFLNQPFLNRTRITGELVEKN 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E L +K I I +++ +L + Sbjct: 123 EKSLILIVDKEK--------IVIPVENIKKVKLAI 149 >gi|239946886|ref|ZP_04698639.1| UPF0090 protein [Rickettsia endosymbiont of Ixodes scapularis] gi|239921162|gb|EER21186.1| UPF0090 protein [Rickettsia endosymbiont of Ixodes scapularis] Length = 166 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 47/164 (28%), Positives = 91/164 (55%), Gaps = 9/164 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-MTLRDCEELSQAISPI 79 + I++VI+ + +M F V + +++I ++ +G +++ DC + S+ IS I Sbjct: 4 IEQQITNVIEESLTDMGFELVLVKFKGVNPKVVEILIDSLNGEKISVEDCTKASRTISAI 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE++IE Y LEVSS G++RP+V+ ++ R++G V ++ K + GKI+ Sbjct: 64 LDVEDLIEDTYSLEVSSSGLERPLVKFENYNRFSGREVKIKLKELLNGKTRYQGKIIKAE 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 +L+ E E ++ I +D + +A L++T+E+ + L Sbjct: 124 NNKIYLKCE--------EQEVLIDYDLIKNANLVLTEEVFKKLL 159 >gi|169342738|ref|ZP_02863778.1| conserved hypothetical protein [Clostridium perfringens C str. JGS1495] gi|169299244|gb|EDS81314.1| conserved hypothetical protein [Clostridium perfringens C str. JGS1495] Length = 170 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 80/153 (52%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L D+ ++ P+++E + I ++E N L++++E+ + ++LRDCE +S+A+S + Sbjct: 22 LVADLEALCAPIVKEKGYDLYHIEYVKENNEYYLRLYIEKPEERISLRDCEIVSRALSDM 81 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD+E+ I+ Y LEVSSPG++R + F R+ G V S ++ + G + Sbjct: 82 LDIEDPIKDAYFLEVSSPGLNRRLHSDEHFNRFIGKEVFVGFKSSLSGRKNVKGILKDVQ 141 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 E +E E +I + D + +A L Sbjct: 142 ENEIIVECEGN--------EIKVPKDKIKTANL 166 >gi|330963973|gb|EGH64233.1| ribosome maturation protein RimP [Pseudomonas syringae pv. actinidiae str. M302091] Length = 152 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 76/154 (49%), Gaps = 10/154 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + ++ PV+ + ++ I + K+ +L+I+++++ G + + DC +S+ IS +LD Sbjct: 6 EQLQGLLAPVVVALGYQCWGIDFSSQGKHSVLRIYIDKE-GGVLVDDCAIVSRQISGVLD 64 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I Y LEVSSPG++RP+ F + G V ++ ++ G + G Sbjct: 65 VEDPISTEYTLEVSSPGMERPLFTIEQFASYAGEQVRIKLRSPFEGRRNFQGLLRGV--- 121 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +E+ + + + + D + A +I T Sbjct: 122 -----EEQDVVVQVEDHEFLLPIDLIDKADIIPT 150 >gi|66767927|ref|YP_242689.1| hypothetical protein XC_1603 [Xanthomonas campestris pv. campestris str. 8004] gi|81306096|sp|Q4UWA4|RIMP_XANC8 RecName: Full=Ribosome maturation factor rimP gi|66573259|gb|AAY48669.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] Length = 196 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 77/157 (49%), Gaps = 12/157 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVE-----RDDGNMTLRDCEELSQA 75 A +I++++ P +E + + + L L+++++ + D + + DCE +S+ Sbjct: 5 ATEIANLLGPTVESLGLELLGVEYLPAPGGATLRLYIDVPLAEQPDRIINVDDCERVSRE 64 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LDVE+ I G+Y LEVSSPG+DRP+ F R G + L+ +++ G+I Sbjct: 65 VSAQLDVEDPISGNYTLEVSSPGVDRPLFTLDQFARHVGESAKIVLKLAQDGRRRFQGQI 124 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + G+ + I F ++ AR+ Sbjct: 125 VRIDTEAAAVVFSVDGK------DVQIGFGNIDKARI 155 >gi|259586211|sp|A8FYS2|RIMP_SHESH RecName: Full=Ribosome maturation factor rimP Length = 151 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 74/154 (48%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + +++ +E + + ++ K+ +L+++++ + G + + DC E S+ +S + Sbjct: 4 IENRLEEMLKSPVEALGHTLWGLEYVQAGKHSILRVYIDNEKG-IFIEDCAETSRQVSAV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ + + + V ++ + + L G I G Sbjct: 63 LDVEDPISTEYTLEVSSPGVDRPLFKAEQYAAYIDETVKIQLTMPVAGSRNLKGTITGIE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + ++ I+ D++ LI Sbjct: 123 GQMLSLTVDGN--------ELIIALDNIRKGNLI 148 >gi|319776226|ref|YP_004138714.1| hypothetical protein HICON_18130 [Haemophilus influenzae F3047] gi|1574740|gb|AAC22931.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] gi|317450817|emb|CBY87039.1| conserved hypothetical protein [Haemophilus influenzae F3047] Length = 141 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 76/147 (51%), Gaps = 10/147 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 ++Q +E++ I + +++F+++ DG +T+ DC ++S+ +S ILDVE+ I Sbjct: 1 MLQDAVEDLGCELWGIECQRVGRFMTVRLFIDK-DGGVTVDDCADVSRQVSAILDVEDPI 59 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE 146 Y LEVSSPG+DRP+ F R+ G +A + + +++K GK+ + L Sbjct: 60 ADKYNLEVSSPGLDRPLFTLPQFERYIGQDIAVHLRIPVMERRKWQGKLERIEKDMITLI 119 Query: 147 KEKRGEKDMNELQIAISFDSLLSARLI 173 + + + + F ++ A ++ Sbjct: 120 VDDQEQI--------LVFGNIQKANVV 138 >gi|238924308|ref|YP_002937824.1| hypothetical protein EUBREC_1947 [Eubacterium rectale ATCC 33656] gi|259585772|sp|C4ZBF8|RIMP_EUBR3 RecName: Full=Ribosome maturation factor rimP gi|238875983|gb|ACR75690.1| protein of unknown function DUF150 [Eubacterium rectale ATCC 33656] gi|291525078|emb|CBK90665.1| Uncharacterized protein conserved in bacteria [Eubacterium rectale DSM 17629] gi|291529173|emb|CBK94759.1| Uncharacterized protein conserved in bacteria [Eubacterium rectale M104/1] Length = 155 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 73/142 (51%), Gaps = 2/142 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPIL 80 S IQP+++ M+F V + ++E + L+ +++++ G +T+ DCE +++ ++ IL Sbjct: 8 EAKTESFIQPILDSMNFELVDVEYVKEGGMNYLRAYIDKE-GGITVDDCEVVARQMNEIL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D E+ I Y EVSSPG+ RP+ ++ D++R + + ++ G + + Sbjct: 67 DREDYIPDSYTFEVSSPGLGRPLKKEKDYVRNMNKEIEIRTYRAINKSKEFYGLLKAYDK 126 Query: 141 TGFFLEKEKRGEKDMNELQIAI 162 + E E N+ IA+ Sbjct: 127 DTVTITDEDGNETTFNKSDIAL 148 >gi|170727896|ref|YP_001761922.1| hypothetical protein Swoo_3563 [Shewanella woodyi ATCC 51908] gi|226703865|sp|B1KRR2|RIMP_SHEWM RecName: Full=Ribosome maturation factor rimP gi|169813243|gb|ACA87827.1| protein of unknown function DUF150 [Shewanella woodyi ATCC 51908] Length = 151 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 74/154 (48%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + +++ +E + + ++ K+ +++++++ + G + + DC E+S+ +S + Sbjct: 4 IENRLEEMLKSPVEALGHTLWGLEYIQAGKHSVVRVYIDNEKG-VFIEDCAEVSRQVSAV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ + + V ++ + + L G + G Sbjct: 63 LDVEDPISTEYTLEVSSPGVDRPLFNAEQYTAYIDETVKIQLTMPVAGSRNLKGTVTGVE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + ++ I+ D++ LI Sbjct: 123 GQMLTLTVDGN--------ELIIALDNIRKGNLI 148 >gi|304310505|ref|YP_003810103.1| Protein of unknown function DUF150 [gamma proteobacterium HdN1] gi|301796238|emb|CBL44446.1| Protein of unknown function DUF150 [gamma proteobacterium HdN1] Length = 154 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 37/159 (23%), Positives = 81/159 (50%), Gaps = 13/159 (8%) Query: 19 MGLAGDISSV---IQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQ 74 M ++ + ++ + P ++ + + K+ +L++F++ ++G +T+ DCE +S Sbjct: 1 MVVSSKLENLKVMLTPAVQAAGMELWGLEFFPQGKHSVLRLFIDSENG-VTIDDCERVSH 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 +S +LDVE+ + G Y LEVSSPG+DRP+ R+ + + ++ K+ +GK Sbjct: 60 QVSAVLDVEDPVSGEYHLEVSSPGMDRPLFGAEQLGRYIHCEIKVRLKMAVDGKRNFVGK 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 ++ SE R +++ + ++ + A L+ Sbjct: 120 LLAVSED--------RCSFEVDGAPLVVATSQIDKANLV 150 >gi|222529040|ref|YP_002572922.1| hypothetical protein Athe_1048 [Caldicellulosiruptor bescii DSM 6725] gi|254799910|sp|B9MR45|RIMP_ANATD RecName: Full=Ribosome maturation factor rimP gi|222455887|gb|ACM60149.1| protein of unknown function DUF150 [Caldicellulosiruptor bescii DSM 6725] Length = 151 Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 83/155 (53%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + +++P++E F V I +E K+ L++++++ G +T+ DC+ +S+ +S Sbjct: 4 ITKKVEELVKPILERYGFDLVDIEFKKEGKSHFLRVYIDKP-GGITIDDCQLVSEELSEK 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD+ + I Y LEVSSPG+DRP+V DF+R G VV + ++ ++ G+++ + Sbjct: 63 LDIVDPIPFSYYLEVSSPGVDRPLVTDRDFIRNKGKVVDVFLNQPFLNRTRITGELVEKN 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E L +K I I +++ +L + Sbjct: 123 EKSLILIVDKEK--------IVIPIENIKKVKLAI 149 >gi|148263955|ref|YP_001230661.1| hypothetical protein Gura_1898 [Geobacter uraniireducens Rf4] gi|189030115|sp|A5GF83|RIMP_GEOUR RecName: Full=Ribosome maturation factor rimP gi|146397455|gb|ABQ26088.1| protein of unknown function DUF150 [Geobacter uraniireducens Rf4] Length = 159 Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 49/163 (30%), Positives = 83/163 (50%), Gaps = 14/163 (8%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ + + VI + V + E ++L++FV+++ G + L DC +S+ Sbjct: 1 MAKVDVISRVTVLAEQVISSLGMELVDLEYKREGREMVLRLFVDKE-GGVNLDDCASVSR 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD-----KQ 129 +S +LDVE++I HY LEVSSPGIDRP+ + DF R+ G +V D ++ Sbjct: 60 ELSEVLDVEDVISEHYSLEVSSPGIDRPLKKVEDFQRFKGRLVKIRTFEPLPDDAGNKRK 119 Query: 130 KLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +G++ G E G L K G+ AI F+ + A L Sbjct: 120 TFLGELKGI-ENGVVLVALKEGQNA------AIPFEKVAKANL 155 >gi|30248763|ref|NP_840833.1| hypothetical protein NE0759 [Nitrosomonas europaea ATCC 19718] gi|34222818|sp|Q82WD1|RIMP_NITEU RecName: Full=Ribosome maturation factor rimP gi|30180358|emb|CAD84670.1| DUF150 [Nitrosomonas europaea ATCC 19718] Length = 143 Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 44/149 (29%), Positives = 81/149 (54%), Gaps = 11/149 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + +++P I M + V I LL++F+++ +G++TL DC +S +S +L VEN Sbjct: 3 LFELLEPTIAGMGYELVDIE-QSAPGRLLRVFIDKKEGSITLDDCVAISNHLSQLLAVEN 61 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I + RLEVSSPG+DRP+ +K+DF+R+ G + ++ ++ +G ++ ++ Sbjct: 62 I--DYNRLEVSSPGLDRPLKKKADFVRYMGESARIRLRIALQGQRNFVGTLVEVNDDVLT 119 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + + + I +L ARLI Sbjct: 120 LNADGK--------LLQIELRNLEKARLI 140 >gi|67459265|ref|YP_246889.1| hypothetical protein RF_0873 [Rickettsia felis URRWXCal2] gi|75536303|sp|Q4UL49|RIMP_RICFE RecName: Full=Ribosome maturation factor rimP gi|67004798|gb|AAY61724.1| Uncharacterized protein [Rickettsia felis URRWXCal2] Length = 161 Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 90/166 (54%), Gaps = 9/166 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-MTLRDCEELSQAISPI 79 + I++VI+ + +M F V + +++I ++ +G +++ DC + S+ IS I Sbjct: 4 IEQQITNVIEESLTDMGFELVLVKFKGVNPKVVEILIDSLNGEKISVEDCTKASRTISAI 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE++IE Y LEV+S G++RP+V+ ++ R+ G V ++ K + GKI+ Sbjct: 64 LDVEDLIEDAYSLEVASSGLERPLVKFENYNRFLGREVKIKLKELLNGKTRYQGKIIKAK 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 +L+ E E ++ I +D + +A L++T+E+ + L Sbjct: 124 NNKIYLKCE--------EQEVLIDYDLIKNANLVLTEEVFKKLLKQ 161 >gi|146329510|ref|YP_001208969.1| hypothetical protein DNO_0031 [Dichelobacter nodosus VCS1703A] gi|166919100|sp|A5EWZ1|RIMP_DICNV RecName: Full=Ribosome maturation factor rimP gi|146232980|gb|ABQ13958.1| conserved hypothetical protein [Dichelobacter nodosus VCS1703A] Length = 155 Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 73/156 (46%), Gaps = 5/156 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M ++ +++P++E M F + N +L+I+V+ +G + + D +++ ++ Sbjct: 1 MSQEQVVTELLRPIVESMGFIWWGLEYHYNSMNSILRIYVDTQEGGIGIDDIVTITEQLN 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 PILDVE I +Y LEVSSPG+DR + + ++ G V C + K+K G + Sbjct: 61 PILDVEQPITTNYTLEVSSPGLDRILFTLAQCEQFIGATVHCRLRFPFEGKRKFQGIMTA 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + ++ + F + AR++ Sbjct: 121 VDHDKETISLT----LADGAAEVHLPFTQIDKARIV 152 >gi|304414227|ref|ZP_07395595.1| hypothetical protein REG_1311 [Candidatus Regiella insecticola LSR1] gi|304283441|gb|EFL91837.1| hypothetical protein REG_1311 [Candidatus Regiella insecticola LSR1] Length = 154 Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 70/151 (46%), Gaps = 9/151 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I ++ + + V + + + L+I+++ DG +T+ C ++S +S +L Sbjct: 8 LEQKLTEIISAPVKALGHKLVGVEFIPGRQSTLRIYIDNCDG-VTVDMCADVSYQVSAVL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE I Y LEVSSPG++R + D+ + G + + ++ +++K G I Sbjct: 67 DVEEPITCPYNLEVSSPGLERLLFTAEDYTDYLGERINLTLRIAMQNRRKWQGIIKAVDG 126 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 + + + E + ++ A Sbjct: 127 EMIIVTVDGKDEV--------FALSNIRKAN 149 >gi|314937504|ref|ZP_07844837.1| UPF0090 family protein [Enterococcus faecium TX0133a04] gi|314942163|ref|ZP_07849017.1| UPF0090 family protein [Enterococcus faecium TX0133C] gi|314947497|ref|ZP_07850912.1| UPF0090 family protein [Enterococcus faecium TX0082] gi|314951484|ref|ZP_07854533.1| UPF0090 family protein [Enterococcus faecium TX0133A] gi|314992574|ref|ZP_07857992.1| UPF0090 family protein [Enterococcus faecium TX0133B] gi|314995491|ref|ZP_07860591.1| UPF0090 family protein [Enterococcus faecium TX0133a01] gi|313590325|gb|EFR69170.1| UPF0090 family protein [Enterococcus faecium TX0133a01] gi|313592866|gb|EFR71711.1| UPF0090 family protein [Enterococcus faecium TX0133B] gi|313596324|gb|EFR75169.1| UPF0090 family protein [Enterococcus faecium TX0133A] gi|313599086|gb|EFR77931.1| UPF0090 family protein [Enterococcus faecium TX0133C] gi|313643145|gb|EFS07725.1| UPF0090 family protein [Enterococcus faecium TX0133a04] gi|313646047|gb|EFS10627.1| UPF0090 family protein [Enterococcus faecium TX0082] Length = 147 Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 35/150 (23%), Positives = 76/150 (50%), Gaps = 8/150 (5%) Query: 28 VIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENI- 85 ++ P+++E +F V++ ++E K+ L++F++++ G + + +C +S+ +S LD + Sbjct: 1 MVTPILDEQNFELVEVEFVKEGKSWFLRVFIDKE-GGIDIEECAFVSEKLSEKLDAADPD 59 Query: 86 -IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I Y LEVSSPG +RP+ ++SD+ + G V + +++ G + Sbjct: 60 PIPQAYFLEVSSPGAERPLKKESDYEKALGDYVHVSLYQPVDGEKQYEGFLQSFDAEQLT 119 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L + E ++ ++ ARL + Sbjct: 120 L----KIRIKTREKELTFDRKNIAKARLAI 145 >gi|157962880|ref|YP_001502914.1| hypothetical protein Spea_3062 [Shewanella pealeana ATCC 700345] gi|189039813|sp|A8H742|RIMP_SHEPA RecName: Full=Ribosome maturation factor rimP gi|157847880|gb|ABV88379.1| protein of unknown function DUF150 [Shewanella pealeana ATCC 700345] Length = 151 Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 75/154 (48%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + +++ +E + + + ++ K+ +L+++++ + G + + DC E S+ +S + Sbjct: 4 LERKLVEMLKAPVEALGHKLWGLEYIQAGKHSILRLYIDNEKG-IFIEDCAEASRQVSAV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +DVE+ I Y LEVSSPG+DRP+ + + G V ++ + + L G + G Sbjct: 63 MDVEDPISTEYTLEVSSPGVDRPLFTAEQYQAYIGETVKVQLTMPVAGSRNLKGTVTGVD 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + ++ ++ D++ LI Sbjct: 123 GQMLNLSVDGN--------ELIVALDNIRKGNLI 148 >gi|21282877|ref|NP_645965.1| hypothetical protein MW1148 [Staphylococcus aureus subsp. aureus MW2] gi|49483428|ref|YP_040652.1| hypothetical protein SAR1241 [Staphylococcus aureus subsp. aureus MRSA252] gi|49486104|ref|YP_043325.1| hypothetical protein SAS1199 [Staphylococcus aureus subsp. aureus MSSA476] gi|57651835|ref|YP_186141.1| hypothetical protein SACOL1284 [Staphylococcus aureus subsp. aureus COL] gi|82750866|ref|YP_416607.1| hypothetical protein SAB1127 [Staphylococcus aureus RF122] gi|87160896|ref|YP_493855.1| hypothetical protein SAUSA300_1158 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194975|ref|YP_499775.1| hypothetical protein SAOUHSC_01242 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221387|ref|YP_001332209.1| hypothetical protein NWMN_1175 [Staphylococcus aureus subsp. aureus str. Newman] gi|161509431|ref|YP_001575090.1| hypothetical protein USA300HOU_1197 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142499|ref|ZP_03566992.1| hypothetical protein SauraJ_12822 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253731884|ref|ZP_04866049.1| protein of hypothetical function DUF150 [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257425319|ref|ZP_05601744.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257427980|ref|ZP_05604378.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257430613|ref|ZP_05606995.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257433373|ref|ZP_05609731.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257436215|ref|ZP_05612262.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|258423894|ref|ZP_05686779.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|258452564|ref|ZP_05700570.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|262048157|ref|ZP_06021044.1| hypothetical protein SAD30_1933 [Staphylococcus aureus D30] gi|262051327|ref|ZP_06023550.1| hypothetical protein SA930_2049 [Staphylococcus aureus 930918-3] gi|282903820|ref|ZP_06311708.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus C160] gi|282905583|ref|ZP_06313438.1| hypothetical protein SDAG_01207 [Staphylococcus aureus subsp. aureus Btn1260] gi|282908558|ref|ZP_06316388.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910837|ref|ZP_06318640.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282914042|ref|ZP_06321829.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M899] gi|282916525|ref|ZP_06324283.1| hypothetical protein SATG_00018 [Staphylococcus aureus subsp. aureus D139] gi|282918964|ref|ZP_06326699.1| hypothetical protein SASG_00270 [Staphylococcus aureus subsp. aureus C427] gi|282920509|ref|ZP_06328230.1| conserved hypothetical protein [Staphylococcus aureus A9765] gi|282924087|ref|ZP_06331763.1| hypothetical protein SARG_01628 [Staphylococcus aureus subsp. aureus C101] gi|283770329|ref|ZP_06343221.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus H19] gi|283958008|ref|ZP_06375459.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus A017934/97] gi|284024258|ref|ZP_06378656.1| hypothetical protein Saura13_06684 [Staphylococcus aureus subsp. aureus 132] gi|293501074|ref|ZP_06666925.1| hypothetical protein SCAG_01604 [Staphylococcus aureus subsp. aureus 58-424] gi|293510036|ref|ZP_06668744.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M809] gi|293526622|ref|ZP_06671307.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M1015] gi|294848261|ref|ZP_06789008.1| hypothetical protein SKAG_00320 [Staphylococcus aureus A9754] gi|295427752|ref|ZP_06820384.1| UPF0090 protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|297208089|ref|ZP_06924520.1| protein of hypothetical function DUF150 [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297591290|ref|ZP_06949928.1| protein of hypothetical function DUF150 [Staphylococcus aureus subsp. aureus MN8] gi|300912170|ref|ZP_07129613.1| protein of hypothetical function DUF150 [Staphylococcus aureus subsp. aureus TCH70] gi|304381171|ref|ZP_07363824.1| protein of hypothetical function DUF150 [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|34222911|sp|Q8NWZ3|RIMP_STAAW RecName: Full=Ribosome maturation factor rimP gi|56749717|sp|Q6G9U8|RIMP_STAAS RecName: Full=Ribosome maturation factor rimP gi|56749746|sp|Q6GHH0|RIMP_STAAR RecName: Full=Ribosome maturation factor rimP gi|81694636|sp|Q5HGG6|RIMP_STAAC RecName: Full=Ribosome maturation factor rimP gi|91207999|sp|Q2YXK3|RIMP_STAAB RecName: Full=Ribosome maturation factor rimP gi|122540592|sp|Q2G2D3|RIMP_STAA8 RecName: Full=Ribosome maturation factor rimP gi|123486179|sp|Q2FHH3|RIMP_STAA3 RecName: Full=Ribosome maturation factor rimP gi|189038628|sp|A8Z3U5|RIMP_STAAT RecName: Full=Ribosome maturation factor rimP gi|205405730|sp|A6QGG5|RIMP_STAAE RecName: Full=Ribosome maturation factor rimP gi|21204316|dbj|BAB95013.1| conserved hypotehtical protein [Staphylococcus aureus subsp. aureus MW2] gi|49241557|emb|CAG40243.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49244547|emb|CAG42976.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57286021|gb|AAW38115.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus COL] gi|82656397|emb|CAI80816.1| conserved hypothetical protein [Staphylococcus aureus RF122] gi|87126870|gb|ABD21384.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202533|gb|ABD30343.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374187|dbj|BAF67447.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|160368240|gb|ABX29211.1| hypothetical protein USA300HOU_1197 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724294|gb|EES93023.1| protein of hypothetical function DUF150 [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257271776|gb|EEV03914.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257274821|gb|EEV06308.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257278741|gb|EEV09360.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257281466|gb|EEV11603.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257284497|gb|EEV14617.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|257845923|gb|EEV69952.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|257859782|gb|EEV82624.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|259160702|gb|EEW45723.1| hypothetical protein SA930_2049 [Staphylococcus aureus 930918-3] gi|259163723|gb|EEW48278.1| hypothetical protein SAD30_1933 [Staphylococcus aureus D30] gi|269940756|emb|CBI49138.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TW20] gi|282314059|gb|EFB44451.1| hypothetical protein SARG_01628 [Staphylococcus aureus subsp. aureus C101] gi|282316774|gb|EFB47148.1| hypothetical protein SASG_00270 [Staphylococcus aureus subsp. aureus C427] gi|282319012|gb|EFB49364.1| hypothetical protein SATG_00018 [Staphylococcus aureus subsp. aureus D139] gi|282322110|gb|EFB52434.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M899] gi|282325442|gb|EFB55751.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282327620|gb|EFB57903.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330875|gb|EFB60389.1| hypothetical protein SDAG_01207 [Staphylococcus aureus subsp. aureus Btn1260] gi|282594171|gb|EFB99158.1| conserved hypothetical protein [Staphylococcus aureus A9765] gi|282595438|gb|EFC00402.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus C160] gi|283460476|gb|EFC07566.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus H19] gi|283470480|emb|CAQ49691.1| protein LMOf2365_1338 [Staphylococcus aureus subsp. aureus ST398] gi|283790157|gb|EFC28974.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus A017934/97] gi|290920694|gb|EFD97757.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M1015] gi|291096079|gb|EFE26340.1| hypothetical protein SCAG_01604 [Staphylococcus aureus subsp. aureus 58-424] gi|291466980|gb|EFF09498.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M809] gi|294825061|gb|EFG41483.1| hypothetical protein SKAG_00320 [Staphylococcus aureus A9754] gi|295128110|gb|EFG57744.1| UPF0090 protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|296887332|gb|EFH26234.1| protein of hypothetical function DUF150 [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297576176|gb|EFH94892.1| protein of hypothetical function DUF150 [Staphylococcus aureus subsp. aureus MN8] gi|298694557|gb|ADI97779.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ED133] gi|300886416|gb|EFK81618.1| protein of hypothetical function DUF150 [Staphylococcus aureus subsp. aureus TCH70] gi|302332871|gb|ADL23064.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus JKD6159] gi|302751088|gb|ADL65265.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340154|gb|EFM06095.1| protein of hypothetical function DUF150 [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312438355|gb|ADQ77426.1| protein of hypothetical function DUF150 [Staphylococcus aureus subsp. aureus TCH60] gi|315194153|gb|EFU24546.1| hypothetical protein CGSSa00_05608 [Staphylococcus aureus subsp. aureus CGS00] gi|315198507|gb|EFU28836.1| hypothetical protein CGSSa01_02741 [Staphylococcus aureus subsp. aureus CGS01] gi|320140918|gb|EFW32765.1| hypothetical protein HMPREF9528_00535 [Staphylococcus aureus subsp. aureus MRSA131] gi|320144366|gb|EFW36132.1| hypothetical protein HMPREF9529_00249 [Staphylococcus aureus subsp. aureus MRSA177] gi|323441045|gb|EGA98752.1| hypothetical protein SAO11_0112 [Staphylococcus aureus O11] gi|323443914|gb|EGB01525.1| hypothetical protein SAO46_0024 [Staphylococcus aureus O46] gi|329313935|gb|AEB88348.1| Ribosome maturation factor rimP [Staphylococcus aureus subsp. aureus T0131] gi|329727856|gb|EGG64307.1| hypothetical protein SA21189_0300 [Staphylococcus aureus subsp. aureus 21189] gi|329733678|gb|EGG70006.1| hypothetical protein SA21193_0242 [Staphylococcus aureus subsp. aureus 21193] Length = 155 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 77/155 (49%), Gaps = 6/155 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + +++P++E+++F V + ++E ++ L+I ++++ G + L DC S+ IS Sbjct: 4 ITEQVEVIVKPIMEDLNFELVDVEYVKEGRDHFLRISIDKE-GGVDLNDCTLASEKISEA 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +D + I Y L+V+SPG +RP+ ++ DF V + + +++ +G + + Sbjct: 63 MDANDPIPEMYYLDVASPGAERPIKKEQDFQNAITKPVFVSLYVPIEGEKEWLGILQEVN 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ + + I I D + AR V Sbjct: 123 NETIVVQVKIKARTK----DIEIPRDKIAKARHAV 153 >gi|302387321|ref|YP_003823143.1| protein of unknown function DUF150 [Clostridium saccharolyticum WM1] gi|302197949|gb|ADL05520.1| protein of unknown function DUF150 [Clostridium saccharolyticum WM1] Length = 155 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 69/142 (48%), Gaps = 2/142 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + P+++E F V + ++E L+ +++++ G +T+ DCE +S+ + L Sbjct: 8 EAKTEGFLLPLMKENHFELVDVEYVKEAGSWYLRAYIDKE-GGITVDDCETISRRLGDWL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D ++ I Y LEVSSPG+ RP+ + DF R G V ++ ++ G + Sbjct: 67 DEKDFIADSYILEVSSPGLGRPLKKDKDFNRSIGKEVDIKLYKPLNKQKDFTGTLTSYDR 126 Query: 141 TGFFLEKEKRGEKDMNELQIAI 162 + +E E +N +IA+ Sbjct: 127 ETVTITQEDGIELVLNRPEIAL 148 >gi|328957407|ref|YP_004374793.1| hypothetical protein CAR_c10840 [Carnobacterium sp. 17-4] gi|328673731|gb|AEB29777.1| hypothetical protein CAR_c10840 [Carnobacterium sp. 17-4] Length = 154 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 73/154 (47%), Gaps = 8/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + ++ +++P++E F I ++E KN L++++++ +G + L DC +S+ IS Sbjct: 1 MVETVTEIVKPIVERNQFELEDIEFIKEGKNWFLRVYIDKPEG-IDLEDCALVSEQISEH 59 Query: 80 LDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +D + I Y LEVSSPG +RP+ ++ D++ G + + ++ G + Sbjct: 60 MDKINPDPIPQAYFLEVSSPGAERPLKKEEDYVNAVGEYIHISLYEPVDGEKVYEGTLKE 119 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 ++ L + I S ++ AR Sbjct: 120 VNDETLTLTIRVKTRVK----DIEFSRKTIAKAR 149 >gi|254295402|ref|YP_003061425.1| hypothetical protein Hbal_3060 [Hirschia baltica ATCC 49814] gi|254043933|gb|ACT60728.1| protein of unknown function DUF150 [Hirschia baltica ATCC 49814] Length = 203 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 50/169 (29%), Positives = 84/169 (49%), Gaps = 7/169 (4%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + I +I+P + V++ ++ +LQI E+ DG M + DC +LS+AI P+L Sbjct: 7 IEKRILDIIEPEATSIGLEIVRVRMMGANTPILQIMAEKPDGTMDVEDCAKLSRAIGPVL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPGIDRP+ R+ DF W + V E+ + +++ G I Sbjct: 67 DVEDPIHSEYNLEVSSPGIDRPLTREGDFANWKTYEVRIELGIPIDGRRRFHGTITDEVN 126 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSY 189 L+ + + IS ++ A L++ D L+ + + + Sbjct: 127 GIVSLDLKDGSKA-------EISIVDMVKASLVMNDRLIEEAQSRGQAP 168 >gi|126698904|ref|YP_001087801.1| hypothetical protein CD1306 [Clostridium difficile 630] gi|254974852|ref|ZP_05271324.1| hypothetical protein CdifQC_06040 [Clostridium difficile QCD-66c26] gi|255092239|ref|ZP_05321717.1| hypothetical protein CdifC_06222 [Clostridium difficile CIP 107932] gi|255100325|ref|ZP_05329302.1| hypothetical protein CdifQCD-6_05917 [Clostridium difficile QCD-63q42] gi|255306263|ref|ZP_05350435.1| hypothetical protein CdifA_06705 [Clostridium difficile ATCC 43255] gi|255313979|ref|ZP_05355562.1| hypothetical protein CdifQCD-7_06500 [Clostridium difficile QCD-76w55] gi|255516659|ref|ZP_05384335.1| hypothetical protein CdifQCD-_06064 [Clostridium difficile QCD-97b34] gi|255649758|ref|ZP_05396660.1| hypothetical protein CdifQCD_06184 [Clostridium difficile QCD-37x79] gi|260682914|ref|YP_003214199.1| hypothetical protein CD196_1169 [Clostridium difficile CD196] gi|260686512|ref|YP_003217645.1| hypothetical protein CDR20291_1147 [Clostridium difficile R20291] gi|306519863|ref|ZP_07406210.1| hypothetical protein CdifQ_07217 [Clostridium difficile QCD-32g58] gi|123363595|sp|Q18BH3|RIMP_CLOD6 RecName: Full=Ribosome maturation factor rimP gi|115250341|emb|CAJ68163.1| conserved hypothetical protein [Clostridium difficile] gi|260209077|emb|CBA62221.1| conserved hypothetical protein [Clostridium difficile CD196] gi|260212528|emb|CBE03478.1| conserved hypothetical protein [Clostridium difficile R20291] Length = 153 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 40/150 (26%), Positives = 82/150 (54%), Gaps = 2/150 (1%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISP 78 L I ++ + +E F V + ++E L++++++++G ++L +CE +S+ +SP Sbjct: 4 NLEATIEEIVTKITDEHGFEMVDVEYVKEAGEYYLRVYIDKEEG-ISLNECELVSRELSP 62 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 ILD ++ I+ +Y LEVSSPG+DR + + DF+R+ G V ++ ++ G+++G Sbjct: 63 ILDEKDPIKENYFLEVSSPGLDRALKKDRDFVRYQGRDVDLKLYKPLNGCKQFEGELVGL 122 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLL 168 +E E + N +AI ++ Sbjct: 123 TEDNNIKIIANGKEMEFNRKDVAIVRLAIK 152 >gi|199597101|ref|ZP_03210533.1| hypothetical protein LRH_07196 [Lactobacillus rhamnosus HN001] gi|258508611|ref|YP_003171362.1| hypothetical protein LGG_01616 [Lactobacillus rhamnosus GG] gi|258539790|ref|YP_003174289.1| hypothetical protein LC705_01599 [Lactobacillus rhamnosus Lc 705] gi|199591905|gb|EDY99979.1| hypothetical protein LRH_07196 [Lactobacillus rhamnosus HN001] gi|257148538|emb|CAR87511.1| Conserved hypotehtical protein [Lactobacillus rhamnosus GG] gi|257151466|emb|CAR90438.1| Conserved hypotehtical protein [Lactobacillus rhamnosus Lc 705] gi|259649918|dbj|BAI42080.1| conserved hypothetical protein [Lactobacillus rhamnosus GG] Length = 159 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 76/158 (48%), Gaps = 8/158 (5%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISP 78 + ++++++P++++ F + ++E L++++++ G +TL +C +S+A+S Sbjct: 5 SVVETVTALVKPILDDHHFYLTDVEFVKEGGGWYLRVYIDKP-GGITLDECVLVSEALSE 63 Query: 79 ILDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 LD + I Y LEVSSPG +RP+ R++D+ + G + + K+ G + Sbjct: 64 QLDAINPDPIPQQYFLEVSSPGAERPLKRETDYEQAIGDYIHVSLFKKLDGKKVFEGTLK 123 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L + + K I + SARL + Sbjct: 124 DLKPDQLTLTVKDKSRKFDQ----VIDRKLIASARLAI 157 >gi|332532409|ref|ZP_08408287.1| NusA-like protein [Pseudoalteromonas haloplanktis ANT/505] gi|332038052|gb|EGI74499.1| NusA-like protein [Pseudoalteromonas haloplanktis ANT/505] Length = 151 Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 L D+ +++ P +E + F + ++ ++ L++++ +DG +++ +C + S+ IS Sbjct: 2 TKLEQDLVTMLTPAVEMLGFELHGLEFVQAGRHSTLRVYIAHEDG-ISVDNCADASRQIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ILDVE+ I Y LEVSSPG+DR + ++ + + G V L ++ G ++ Sbjct: 61 AILDVEDPITNEYDLEVSSPGVDRLLFKQDHYEQAQGEEVRVRTKLPQDGRRNFKGDLVA 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 S L + + I ++ A LI Sbjct: 121 VSSDMITLSSDG--------AEHLIMLSNIERANLI 148 >gi|259586210|sp|B8CKH1|RIMP_SHEPW RecName: Full=Ribosome maturation factor rimP Length = 151 Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 75/154 (48%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + +++ +E + + ++ K+ +L+++++ + G + + DC E S+ +S + Sbjct: 4 LERKLVEMLKAPVEALGHELWGLEYIQAGKHSILRLYIDNEKG-IFIEDCAETSRQVSAV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +DVE+ I Y LEVSSPG+DRP+ + + G V ++ + + L G ++G Sbjct: 63 MDVEDPISTEYTLEVSSPGVDRPLFTAEQYQLYIGETVKVQVTMPVAGSRNLKGTVIGIE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + ++ I+ D++ LI Sbjct: 123 GQMLTLSVDGN--------ELIIALDNIRKGNLI 148 >gi|18310672|ref|NP_562606.1| hypothetical protein CPE1690 [Clostridium perfringens str. 13] gi|110799296|ref|YP_696377.1| hypothetical protein CPF_1944 [Clostridium perfringens ATCC 13124] gi|168211422|ref|ZP_02637047.1| conserved hypothetical protein [Clostridium perfringens B str. ATCC 3626] gi|168214477|ref|ZP_02640102.1| conserved hypothetical protein [Clostridium perfringens CPE str. F4969] gi|168216977|ref|ZP_02642602.1| conserved hypothetical protein [Clostridium perfringens NCTC 8239] gi|182626379|ref|ZP_02954133.1| conserved hypothetical protein [Clostridium perfringens D str. JGS1721] gi|34223128|sp|Q8XJR4|RIMP_CLOPE RecName: Full=Ribosome maturation factor rimP gi|122958819|sp|Q0TPR3|RIMP_CLOP1 RecName: Full=Ribosome maturation factor rimP gi|18145353|dbj|BAB81396.1| conserved hypothetical protein [Clostridium perfringens str. 13] gi|110673943|gb|ABG82930.1| conserved hypothetical protein [Clostridium perfringens ATCC 13124] gi|170710586|gb|EDT22768.1| conserved hypothetical protein [Clostridium perfringens B str. ATCC 3626] gi|170714055|gb|EDT26237.1| conserved hypothetical protein [Clostridium perfringens CPE str. F4969] gi|177908330|gb|EDT70878.1| conserved hypothetical protein [Clostridium perfringens D str. JGS1721] gi|182380875|gb|EDT78354.1| conserved hypothetical protein [Clostridium perfringens NCTC 8239] Length = 154 Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 80/153 (52%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L D+ ++ P+++E + I ++E N L++++E+ + ++LRDCE +S+A+S + Sbjct: 6 LVADLEALCAPIVKEKGYDLYHIEYVKENNEYYLRLYIEKPEERISLRDCEIVSRALSDM 65 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD+E+ I+ Y LEVSSPG++R + F R+ G V S ++ + G + Sbjct: 66 LDIEDPIKDAYFLEVSSPGLNRRLHSDEHFNRFIGKEVFVGFKSSLSGRKNVKGILKDVQ 125 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 E +E E +I + D + +A L Sbjct: 126 ENEIIVECEGN--------EIKVPKDKIKTANL 150 >gi|326791501|ref|YP_004309322.1| hypothetical protein Clole_2418 [Clostridium lentocellum DSM 5427] gi|326542265|gb|ADZ84124.1| protein of unknown function DUF150 [Clostridium lentocellum DSM 5427] Length = 153 Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 39/161 (24%), Positives = 84/161 (52%), Gaps = 10/161 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQ 74 L I + P++ E+ + V + ++E N L+I+++++ G +T++DC+ S+ Sbjct: 1 MNKKELIEVIEGYLDPILAELHYELVDVEYVKEGPNYYLRIYIDKE-GGITIQDCQLTSR 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 AI +LD ++ I+ Y LEVSSPG+DR + + +F R+ G +V ++ + ++ G+ Sbjct: 60 AIEKVLDEKDPIKDPYVLEVSSPGLDRVLKKDKEFERFKGRLVDVKLYEAINKQKHFTGE 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 ++ +E +++ E + ++ RL +T Sbjct: 120 LIKKTEDKLYIDDEG--------TNLEFEMKNVAVVRLAIT 152 >gi|285017806|ref|YP_003375517.1| hypothetical protein XALc_1014 [Xanthomonas albilineans GPE PC73] gi|283473024|emb|CBA15529.1| conserved hypothetical protein [Xanthomonas albilineans] Length = 201 Score = 160 bits (407), Expect = 7e-38, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 77/157 (49%), Gaps = 12/157 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGN-----MTLRDCEELSQA 75 A +I++++ P ++ + + L L+++++ G + + DCE +S+ Sbjct: 5 ANEIANLLGPTVDALGLELLGAEYLPASGGATLRLYIDVPLGEQPERMVNIDDCERVSRE 64 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LDVE+ I G+Y LEVSSPG+DRP+ F R + L +++L G+I Sbjct: 65 VSAQLDVEDPISGNYTLEVSSPGVDRPLFTAEQFARHRDESAKVVLKLPQQGRRRLQGRI 124 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + R +++ ++ + FD++ AR+ Sbjct: 125 VQVELDA------GRIVFEVDGAELTVDFDNIDKARI 155 >gi|312134895|ref|YP_004002233.1| hypothetical protein Calow_0865 [Caldicellulosiruptor owensensis OL] gi|311774946|gb|ADQ04433.1| protein of unknown function DUF150 [Caldicellulosiruptor owensensis OL] Length = 151 Score = 160 bits (407), Expect = 7e-38, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 81/155 (52%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + +++P++E F V I +E K+ L++++++ G +T+ DC+ +S+ +S Sbjct: 4 ITKKVEELVKPILERYGFDLVDIEFKKEGKSHFLRVYIDKP-GGITIDDCQLVSEELSER 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD+ + I Y LEVSSPG+DRP+V DF+R G +V + ++ K G+++ + Sbjct: 63 LDIVDPIPFSYYLEVSSPGVDRPLVTDRDFIRNKGRLVEVFLSQPFLNRTKFTGELVEKN 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + L +K I I + + ++ + Sbjct: 123 DKFLVLIMDKEK--------IDIPIEKVKKVKIAI 149 >gi|270290315|ref|ZP_06196540.1| hypothetical protein HMPREF9024_00500 [Pediococcus acidilactici 7_4] gi|270281096|gb|EFA26929.1| hypothetical protein HMPREF9024_00500 [Pediococcus acidilactici 7_4] Length = 158 Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 74/158 (46%), Gaps = 8/158 (5%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISP 78 + I+ + +PVIE F+ V++ ++E L+ ++++ G + + +C +S +S Sbjct: 4 NVVEKITELARPVIESHDFQLVEVEFVKEGQGWFLRFYIDKV-GGINIEECAMVSDELSE 62 Query: 79 ILDVENI--IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 +LD ++ I Y LEVSSPG +RP+ K D G + + S ++ G + Sbjct: 63 LLDQQDPDPIPQAYFLEVSSPGAERPLKTKEDLAAAVGEYIHISLYASINKQKVFEGYLK 122 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L+ + ++ ++++ + ARL + Sbjct: 123 SFENDELVLDYLDKTRHK----ELKVAYNQVAFARLAI 156 >gi|217970107|ref|YP_002355341.1| hypothetical protein Tmz1t_1690 [Thauera sp. MZ1T] gi|217507434|gb|ACK54445.1| protein of unknown function DUF150 [Thauera sp. MZ1T] Length = 144 Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 80/153 (52%), Gaps = 12/153 (7%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + D+ +I+ V+ + + V I K LL++F++ + G +T+ DC +S + + Sbjct: 1 MRADVEGLIEQVVTGLGYELVDIEFSP-KGRLLRVFLDIERG-ITVDDCATVSNQLQRVF 58 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 +VEN+ + RLEVSSPG+DRP+ + +DF R+ G + L G+++ +G I + Sbjct: 59 EVENV--DYDRLEVSSPGLDRPLKKLADFERFAGEQAQVRLSLPIGNQRNFVGVIERVQD 116 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L EK ++ + FD + ARL+ Sbjct: 117 GAVALRTEKG--------EVLLPFDDIEKARLV 141 >gi|160880909|ref|YP_001559877.1| hypothetical protein Cphy_2778 [Clostridium phytofermentans ISDg] gi|226701647|sp|A9KNW8|RIMP_CLOPH RecName: Full=Ribosome maturation factor rimP gi|160429575|gb|ABX43138.1| protein of unknown function DUF150 [Clostridium phytofermentans ISDg] Length = 155 Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 74/150 (49%), Gaps = 9/150 (6%) Query: 26 SSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ P++EE +F V + ++E N L+ +++++ G +T+ DCE +S+ S +LD ++ Sbjct: 12 EQLLTPIMEENNFELVDVEYVKEVGNWYLRAYIDKE-GGITVDDCEVVSRRFSDLLDEKD 70 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I Y LEVSSPG+ R + + DF R G V ++ + ++ G + + Sbjct: 71 FIPDAYILEVSSPGLGRQLKKDKDFKRSLGEEVEIKLYKAINKQKDFEGILTDFDQEKLI 130 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E+ + + + + RL + Sbjct: 131 IEQ-------ADGTTMEFARADIAMVRLAL 153 >gi|197106903|ref|YP_002132280.1| hypothetical protein PHZ_c3442 [Phenylobacterium zucineum HLK1] gi|259586178|sp|B4RC58|RIMP_PHEZH RecName: Full=Ribosome maturation factor rimP gi|196480323|gb|ACG79851.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1] Length = 187 Score = 160 bits (406), Expect = 9e-38, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 83/167 (49%), Gaps = 14/167 (8%) Query: 31 PVIEEMSFRSVQISLLEEKN--LLLQIFVERD------DGNMTLRDCEELSQAISPILDV 82 PV E + + V++ L+ + LQI ER G+M + DC +LS+A+S +LD Sbjct: 17 PVAEAVGYEIVRLRLMGGERNQRRLQIMAERPLLEDGTGGDMNVEDCAKLSRAVSEVLDA 76 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 + I G Y LEVSSPG+DRP+ R DF + G+ E+ + +++ G + G Sbjct: 77 ADPISGEYTLEVSSPGVDRPLTRLKDFDTYEGYEARLELDRLAEGRKRFRGVLAGVEGDQ 136 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSY 189 ++ E E + F ++ A+L++TDEL++ + Sbjct: 137 VAIDLEGE------EETALVPFAWIVEAKLVLTDELMKRGAQTRAAR 177 >gi|37523057|ref|NP_926434.1| hypothetical protein glr3488 [Gloeobacter violaceus PCC 7421] gi|35214060|dbj|BAC91429.1| glr3488 [Gloeobacter violaceus PCC 7421] Length = 182 Score = 160 bits (406), Expect = 9e-38, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 80/170 (47%), Gaps = 13/170 (7%) Query: 9 SKYEPRIFGDMG---LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNM 64 S +E F M + ++++ +PV E++ + V ++ K L++ + Sbjct: 17 SGFEAHFFDGMNPRDIVEQVTALAEPVAEQLGLQLVAVAYQTHTKPATLRVDIRHPTEGT 76 Query: 65 TLRDCEELSQAISPILD-VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVL 123 L DCE++S+A+ +LD +++I G Y LEVSSPG++R + +F+ + G V + Sbjct: 77 GLDDCEKMSRALEALLDTRDDLIIGAYNLEVSSPGVERVLTTDREFMAFRGFPVMVKTFG 136 Query: 124 SSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 K++ G+++ +L R ++A+ + +L+ Sbjct: 137 PVDGKKQWEGRLLERDGENVYLTIAGR--------RVALPRPQVARVQLV 178 >gi|323485569|ref|ZP_08090914.1| hypothetical protein HMPREF9474_02665 [Clostridium symbiosum WAL-14163] gi|323692917|ref|ZP_08107140.1| ribosome maturation factor rimP [Clostridium symbiosum WAL-14673] gi|323401108|gb|EGA93461.1| hypothetical protein HMPREF9474_02665 [Clostridium symbiosum WAL-14163] gi|323503024|gb|EGB18863.1| ribosome maturation factor rimP [Clostridium symbiosum WAL-14673] Length = 155 Score = 160 bits (406), Expect = 9e-38, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 69/142 (48%), Gaps = 2/142 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + + PV+EE F V + + E L+ +++++ G + + DCE +S+ + L Sbjct: 8 EAKVEAWLLPVLEEHHFELVDVEYVREVGVWYLRAYIDKE-GGIAVDDCEIISRKLGEWL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D E+ I+ Y LEVSSPG+ RP+ ++ DF+R G V + +++ G + Sbjct: 67 DKEDFIDDSYILEVSSPGLGRPLKKEKDFVRSMGKDVEVRLYKPLNKQKEYTGALKSYDA 126 Query: 141 TGFFLEKEKRGEKDMNELQIAI 162 + E + + IA+ Sbjct: 127 DTVTITLEDGNDLIFAKADIAL 148 >gi|309389229|gb|ADO77109.1| protein of unknown function DUF150 [Halanaerobium praevalens DSM 2228] Length = 155 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 83/153 (54%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 +A ++ + P+ + + + + L+E + +L+IF+E +G +T+ +CE++S+++S I Sbjct: 7 VAETVTDFVLPIAQSENLNLIDVEFLKEGSDWILRIFLENKNGELTIEECEKVSRSLSMI 66 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD E+ I+ Y LEVSSPG++RP+ + DF R+ G ++A + +++ +G + + Sbjct: 67 LDEEDPIDKSYILEVSSPGLERPLKTEEDFERFKGELIAVKTFKKIEGQKEFVGILKDFN 126 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 LE + + I + + A L Sbjct: 127 VDKITLEIDNNK--------LEIDYSLVARANL 151 >gi|308272454|emb|CBX29058.1| Ribosome maturation factor rimP [uncultured Desulfobacterium sp.] Length = 194 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 73/153 (47%), Gaps = 10/153 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L I + E V I E +++++V++ G +TL+DC +S +S I Sbjct: 42 LIAKIKEFADTICESKGIELVHIEYQRETGGRVIRLYVDK-QGGVTLKDCAWVSHQLSDI 100 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD+ + Y LEVSSPG +RP+ + DF R+ G+ ++ ++ G ++G + Sbjct: 101 LDINLDTDWPYSLEVSSPGANRPLGKPEDFKRFKGNTATVRTIVPVEGQKNFKGVLLGFN 160 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + L +N+ +AIS+ + ARL Sbjct: 161 DGFVKL--------KINDKMVAISYKEIAKARL 185 >gi|166030877|ref|ZP_02233706.1| hypothetical protein DORFOR_00557 [Dorea formicigenerans ATCC 27755] gi|166029144|gb|EDR47901.1| hypothetical protein DORFOR_00557 [Dorea formicigenerans ATCC 27755] Length = 157 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 40/144 (27%), Positives = 72/144 (50%), Gaps = 4/144 (2%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++ P++EE+ F V + ++E + L+ ++++ G +T+ DCE +S+ +S IL Sbjct: 8 EQKTEEILNPIMEELEFELVDVEYVKEGSMWYLRAYIDKP-GGITVNDCEAVSRRLSDIL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS- 139 D ++ IE Y LEVSSPG+ RP+ ++ D+ R G V K++ G + Sbjct: 67 DEKDFIEDSYVLEVSSPGLGRPLKKEKDYKRNLGKEVEIRTYRMVDKKKEFTGLLDSYDY 126 Query: 140 -ETGFFLEKEKRGEKDMNELQIAI 162 +E E K + IA+ Sbjct: 127 EAGTVTIELEDGTMKTFEKGDIAL 150 >gi|118579396|ref|YP_900646.1| hypothetical protein Ppro_0960 [Pelobacter propionicus DSM 2379] gi|259586175|sp|A1AML8|RIMP_PELPD RecName: Full=Ribosome maturation factor rimP gi|118502106|gb|ABK98588.1| protein of unknown function DUF150 [Pelobacter propionicus DSM 2379] Length = 161 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 84/159 (52%), Gaps = 14/159 (8%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + I ++ PVI+ M+ V++ + +L++F++++ G +TL DC +LS+ +S Sbjct: 7 DICDRIRTLALPVIDSMNLELVEVEYKRSGREAVLRLFIDKE-GGVTLDDCADLSRELST 65 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD-----KQKLIG 133 +LDVE++I Y LEVSSPG+DRP+ ++D+ R++G ++ D ++ +G Sbjct: 66 LLDVEDLIPCEYSLEVSSPGLDRPLKSEADYERFSGRLIKVRTYEPYQDDAGNRRKTFLG 125 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ G + + + +I + + A+L Sbjct: 126 RLEGLKDGSVVMSLTE-------GQTASIPLERIAKAQL 157 >gi|239626255|ref|ZP_04669286.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520485|gb|EEQ60351.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 155 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 69/142 (48%), Gaps = 2/142 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + P++EE F V + ++E L+ +++++ G + + DCE +S+ + L Sbjct: 8 ESRVERYLLPLMEEHHFELVDVEYVKEAGTWYLRAYIDKE-GGIAVDDCEVISRKLGDWL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D E+ I+ Y LEVSSPG+ RP+ ++ DF+R G V + +++ G + Sbjct: 67 DKEDFIDESYILEVSSPGLGRPLKKEKDFIRSMGKDVDVRLYRQIDKQKEFTGALSAYDG 126 Query: 141 TGFFLEKEKRGEKDMNELQIAI 162 L E + + IA+ Sbjct: 127 NTVTLTMEDGSQMVFEKPDIAL 148 >gi|317133696|ref|YP_004093010.1| protein of unknown function DUF150 [Ethanoligenens harbinense YUAN-3] gi|315471675|gb|ADU28279.1| protein of unknown function DUF150 [Ethanoligenens harbinense YUAN-3] Length = 165 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 68/137 (49%), Gaps = 3/137 (2%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELS 73 + + + ++ PV E + I ++E + L+I++++ DG + + DCE S Sbjct: 1 MAAGKSVVSRVEALALPVAETLGLSIWDIEYVKEGASWFLRIYIDK-DGGVGIEDCEAFS 59 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS-GDKQKLI 132 +AI LD ++I Y LEVSSPGI+R + R + F + G V ++ ++++ Sbjct: 60 RAIDGPLDEADLIPQQYYLEVSSPGIERELKRDAHFQAFIGKKVHVRLIRPLEDGRREVN 119 Query: 133 GKIMGTSETGFFLEKEK 149 G + ++ LE + Sbjct: 120 GTLTAFADGTLTLETPE 136 >gi|110801637|ref|YP_698977.1| hypothetical protein CPR_1662 [Clostridium perfringens SM101] gi|123341718|sp|Q0SSD0|RIMP_CLOPS RecName: Full=Ribosome maturation factor rimP gi|110682138|gb|ABG85508.1| conserved hypothetical protein [Clostridium perfringens SM101] Length = 154 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 80/153 (52%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L D+ ++ P+++E + I ++E N L++++E+ + ++LRDCE +S+A+S + Sbjct: 6 LVADLEALCAPIVKEKGYDLYHIEYVKENNEYYLRLYIEKPEERISLRDCEIVSRALSDM 65 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD+E+ I+ Y LEVSSPG++R + F R+ G + S ++ + G + Sbjct: 66 LDIEDPIKDAYFLEVSSPGLNRRLHSDEHFNRFIGKEIFVGFKSSLSGRKNVKGILKDVQ 125 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 E +E E +I + D + +A L Sbjct: 126 ENEIIVECEGN--------EIKVPKDKIKTANL 150 >gi|197117687|ref|YP_002138114.1| hypothetical protein Gbem_1299 [Geobacter bemidjiensis Bem] gi|226695910|sp|B5EI54|RIMP_GEOBB RecName: Full=Ribosome maturation factor rimP gi|197087047|gb|ACH38318.1| protein of unknown function DUF150 [Geobacter bemidjiensis Bem] Length = 160 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 39/163 (23%), Positives = 82/163 (50%), Gaps = 13/163 (7%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ +I V + V + E +++++++F+E+ +G + L DC ++S+ Sbjct: 1 MAKVDVVERVTEIIAEVGAPLGIELVDLEYKREGRDMVVRVFLEKREGGINLDDCADVSR 60 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD-----KQ 129 +S ILDVE+ + Y LEVSSPGI RP+ + +D+ R+ GH++ + D ++ Sbjct: 61 QLSDILDVEDFMPERYTLEVSSPGICRPLKKVADYERFLGHLIKVKTFEMLADEAGNKRK 120 Query: 130 KLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 GK+ G ++ ++ + + + D + A L Sbjct: 121 TFTGKLTGIADGVIGIDLTEGQKA-------RVPLDKVAKANL 156 >gi|39996685|ref|NP_952636.1| hypothetical protein GSU1585 [Geobacter sulfurreducens PCA] gi|81702398|sp|Q74CT6|RIMP_GEOSL RecName: Full=Ribosome maturation factor rimP gi|39983566|gb|AAR34959.1| conserved hypothetical protein [Geobacter sulfurreducens PCA] gi|298505696|gb|ADI84419.1| protein of unknown function DUF150 [Geobacter sulfurreducens KN400] Length = 159 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 14/163 (8%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQ 74 +AG I++V + V+ V++ E ++L++FV++ G ++L DC +S+ Sbjct: 1 MQKDDVAGRITAVAEQVLTPQGLELVEVEYKREGRQMVLRLFVDKP-GGISLDDCAAVSR 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD-----KQ 129 +S ILDVE+ I +Y LEVSSPG++RP+ +++D+ R+ G +V D ++ Sbjct: 60 ELSEILDVEDFIRENYTLEVSSPGLNRPLKKEADYERYAGRLVKVRTFELLADEEGNRRK 119 Query: 130 KLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +G ++G S+ L I D + A L Sbjct: 120 TFLGDLVGLSDGVVTLTL-------REGQLARIPLDKIAKANL 155 >gi|87119793|ref|ZP_01075690.1| hypothetical protein MED121_07630 [Marinomonas sp. MED121] gi|86165269|gb|EAQ66537.1| hypothetical protein MED121_07630 [Marinomonas sp. MED121] Length = 153 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 79/151 (52%), Gaps = 10/151 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERD-DGNMTLRDCEELSQAISPILDV 82 + I+PV+E + +R + + + K+ +L++F+E D + + DC ++S+ +S ILDV Sbjct: 8 LEGHIRPVVEGLGYRFWGLEYISQGKDSVLRVFIESDSENGTDIEDCAKVSRQVSSILDV 67 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ I G Y LEVSSPG+DRP+ + F + G +V+ + + ++K G++ Sbjct: 68 EDPITGEYNLEVSSPGLDRPLFELAQFEEYIGAIVSLRLRVPFDGRRKFKGQLTAVEGED 127 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L ++ + + D + A ++ Sbjct: 128 VVLRVDQE--------EYLLPIDLIDKANVV 150 >gi|163752375|ref|ZP_02159570.1| hypothetical protein KT99_00518 [Shewanella benthica KT99] gi|161327747|gb|EDP98934.1| hypothetical protein KT99_00518 [Shewanella benthica KT99] Length = 151 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 76/154 (49%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + ++ +E + R + ++ K+ +L+++++ D+G + + DC E S+ IS + Sbjct: 4 IEKKLEEMLSSPVEALGHRLWGLEYIQAGKHSILRVYIDNDNG-IFIEDCAETSRQISAV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I + LEVSSPG+DRP+ + + V ++ + G + L G ++G Sbjct: 63 LDVEDPISTEFTLEVSSPGVDRPLFSAEQYGSYIDETVKIQLTMPVGGSRNLKGTVIGVE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + ++ I+ D++ LI Sbjct: 123 GQTLTLSVDGN--------ELIIALDNIRRGNLI 148 >gi|288817342|ref|YP_003431689.1| hypothetical protein HTH_0021 [Hydrogenobacter thermophilus TK-6] gi|288786741|dbj|BAI68488.1| hypothetical protein HTH_0021 [Hydrogenobacter thermophilus TK-6] gi|308750949|gb|ADO44432.1| protein of unknown function DUF150 [Hydrogenobacter thermophilus TK-6] Length = 157 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 79/157 (50%), Gaps = 7/157 (4%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 + + + + +P+I+ + F+ + E+ +L++ +++ DG +T+ DCEE+S+ Sbjct: 3 INEKSIVEKVRQLAEPIIKNLGFKLFDVEFKPERGWVLRVILDK-DGGITVNDCEEVSKR 61 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+II Y LEVSSPG+ R + + + + G ++ + + K++L G I Sbjct: 62 LSALLDVEDIIPTSYILEVSSPGLTRELTKPEHYEFFKGRLIRLVLREALEGKRELKGYI 121 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + E L ++ G+ + A L Sbjct: 122 VDVKEGILQLREKDSGKM------FHTPLSIVARAHL 152 >gi|292669519|ref|ZP_06602945.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] gi|292648842|gb|EFF66814.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] Length = 163 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 73/163 (44%), Gaps = 13/163 (7%) Query: 11 YEPRIFGDMGLAGDISSVIQPV-IEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDC 69 YE R + + + + + ++ V + + E++ L+I+++++ G + + DC Sbjct: 9 YEKRESMSAKIEERVEEIARGLLVDAPELELVDVEYVRERDWYLRIYIDKE-GGIDIEDC 67 Query: 70 EELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ 129 + LS+ + +LD E+ I Y LEVSSPG+DR + + DF R G V + K+ Sbjct: 68 QGLSERLEEMLDREDFIPDAYILEVSSPGLDRVLRKPRDFEREQGKAVDVTLYAPFEGKK 127 Query: 130 KLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + G + G L+ I I D + RL Sbjct: 128 QWTGTLAGYDGEMLTLDDG-----------IRIPLDQISQIRL 159 >gi|255655318|ref|ZP_05400727.1| hypothetical protein CdifQCD-2_06375 [Clostridium difficile QCD-23m63] gi|296451303|ref|ZP_06893043.1| protein of hypothetical function DUF150 [Clostridium difficile NAP08] gi|296880345|ref|ZP_06904308.1| protein of hypothetical function DUF150 [Clostridium difficile NAP07] gi|296259909|gb|EFH06764.1| protein of hypothetical function DUF150 [Clostridium difficile NAP08] gi|296428586|gb|EFH14470.1| protein of hypothetical function DUF150 [Clostridium difficile NAP07] Length = 153 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 40/150 (26%), Positives = 82/150 (54%), Gaps = 2/150 (1%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISP 78 L I ++ + +E F V + ++E L++++++++G ++L +CE +S+ +SP Sbjct: 4 NLEATIEEIVTKITDEHGFEMVDVEYVKEAGEYYLRVYIDKEEG-ISLNECELVSRELSP 62 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 ILD ++ I+ +Y LEVSSPG+DR + + DF+R+ G V ++ ++ G+++G Sbjct: 63 ILDEKDPIKENYFLEVSSPGLDRALKKDRDFVRYQGRDVDLKLYKPLNGCKQFEGELVGL 122 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLL 168 +E E + N +AI ++ Sbjct: 123 TEDNNIKIIVNGKEIEFNRKDVAIVRLAIK 152 >gi|284048696|ref|YP_003399035.1| protein of unknown function DUF150 [Acidaminococcus fermentans DSM 20731] gi|283952917|gb|ADB47720.1| protein of unknown function DUF150 [Acidaminococcus fermentans DSM 20731] Length = 153 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 1/141 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + ++ + P++EE V + + E++ L++F+++ G + + DC +S A++ L Sbjct: 6 ITERVTDLAAPIVEEAGLELVDVEYVRERDWFLRVFIDKA-GGIDIDDCSAVSNALAKKL 64 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D E+ I+ Y LEVSSPGIDRP+ + D G V K++L + Sbjct: 65 DEEDFIKEKYYLEVSSPGIDRPLKKDKDLEAHYGQKVDLAFFAPYEGKKQLTAVLKSHDA 124 Query: 141 TGFFLEKEKRGEKDMNELQIA 161 LE K+ + + IA Sbjct: 125 EKLVLEDAKKKKLAIERKLIA 145 >gi|323705404|ref|ZP_08116979.1| protein of unknown function DUF150 [Thermoanaerobacterium xylanolyticum LX-11] gi|323535306|gb|EGB25082.1| protein of unknown function DUF150 [Thermoanaerobacterium xylanolyticum LX-11] Length = 151 Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 40/137 (29%), Positives = 75/137 (54%), Gaps = 3/137 (2%) Query: 19 MGLAGDIS-SVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAI 76 M +++ ++ P IE+ F V + +E N L++++++ DG ++L DC+ +S+ + Sbjct: 1 MSKIEELTRQLVTPAIEKNKFELVDVEYKKEGNNWYLRVYIDK-DGGVSLDDCQIISEYL 59 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 S LD + I+ Y LEVSSPGIDRP+ K DF ++ G +V + K+K G+++ Sbjct: 60 SEKLDEVDPIDNSYILEVSSPGIDRPLKTKRDFEKFKGSLVEVSLYQPIDKKKKYEGELL 119 Query: 137 GTSETGFFLEKEKRGEK 153 G + + + + Sbjct: 120 GLEDDKVIIVDDGGKRE 136 >gi|315641144|ref|ZP_07896223.1| protein of hypothetical function DUF150 [Enterococcus italicus DSM 15952] gi|315483152|gb|EFU73669.1| protein of hypothetical function DUF150 [Enterococcus italicus DSM 15952] Length = 154 Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 75/157 (47%), Gaps = 8/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + ++ ++ P+++ F V++ ++E K+ L++F+++++G + + +C +S+ +S Sbjct: 1 MVQTVTDLVVPILDSKHFELVEVEFVKEGKSWFLRVFIDKEEG-IDIEECAWVSEMLSEK 59 Query: 80 LDVENI--IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + I Y LE+SSPG +RP+ ++ D+ + G V + + +++ G + Sbjct: 60 LDSIDPDPIPQAYFLEISSPGAERPLKKEKDYEKAVGSFVHLSLYQAVDGEKQYEGILDA 119 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L + ++ ARL + Sbjct: 120 VEAETLTLTYRIKTRTKTQ----TFERKNIAKARLAI 152 >gi|225374839|ref|ZP_03752060.1| hypothetical protein ROSEINA2194_00460 [Roseburia inulinivorans DSM 16841] gi|225213300|gb|EEG95654.1| hypothetical protein ROSEINA2194_00460 [Roseburia inulinivorans DSM 16841] Length = 162 Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 75/142 (52%), Gaps = 2/142 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPIL 80 +I P+++ +F V + ++E + L+++++++ G +T DC ++S+ ++ IL Sbjct: 15 EARTEELITPILDRRNFELVDVEYVKEGSTWYLRVYIDKE-GGITSDDCADVSREMNEIL 73 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D E+ +EG Y EVSSPG+ RP+ ++ D++R G + + +++ G + Sbjct: 74 DREDYVEGSYTFEVSSPGLGRPLKKEKDYIRSMGKELEIRTYRAIDREKEFYGILKAYDA 133 Query: 141 TGFFLEKEKRGEKDMNELQIAI 162 +E+E E + IA+ Sbjct: 134 DTVTIEQEDGKEMVFEKSNIAL 155 >gi|283797336|ref|ZP_06346489.1| hypothetical protein CLOM621_07330 [Clostridium sp. M62/1] gi|291075008|gb|EFE12372.1| hypothetical protein CLOM621_07330 [Clostridium sp. M62/1] gi|295090488|emb|CBK76595.1| Uncharacterized protein conserved in bacteria [Clostridium cf. saccharolyticum K10] Length = 155 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 69/142 (48%), Gaps = 2/142 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + + P++E+ F V + + E L+ +++++ G +T+ DCE +S+ + L Sbjct: 8 ESKVEAWLLPLLEKYKFELVDVEYVREAGLWYLRAYIDKE-GGITVDDCEVVSRELGDWL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D E+ I Y LEVSSPG+ RP+ ++ DF R G V + +++ G + Sbjct: 67 DKEDFIADSYILEVSSPGLGRPLKKEKDFARSLGKAVEVRLYRPINRQKEFTGALKAYDA 126 Query: 141 TGFFLEKEKRGEKDMNELQIAI 162 L E E + + IA+ Sbjct: 127 DTVTLSMEDESELVLEKSDIAL 148 >gi|291536068|emb|CBL09180.1| Uncharacterized protein conserved in bacteria [Roseburia intestinalis M50/1] gi|291538563|emb|CBL11674.1| Uncharacterized protein conserved in bacteria [Roseburia intestinalis XB6B4] Length = 155 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 74/142 (52%), Gaps = 2/142 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPIL 80 +I P+++ M+F V + ++E L+ +++++ G +T+ DCE +++ ++ IL Sbjct: 8 ETRTEELITPILDRMNFELVDVEYVKEGGTWYLRAYIDKE-GGITVNDCEAVAREMNEIL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D E+ +E Y EVSSPG+ RP+ ++ D++R G V + +++ G + E Sbjct: 67 DREDFVEDSYVFEVSSPGLGRPLKKEKDYIRSMGKEVEIRTYRAINREKEFYGILSAYDE 126 Query: 141 TGFFLEKEKRGEKDMNELQIAI 162 ++ E E + IA+ Sbjct: 127 NTVTIKTEDGTEMTFEKSDIAL 148 >gi|303240819|ref|ZP_07327332.1| protein of unknown function DUF150 [Acetivibrio cellulolyticus CD2] gi|302591707|gb|EFL61442.1| protein of unknown function DUF150 [Acetivibrio cellulolyticus CD2] Length = 153 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 71/118 (60%), Gaps = 2/118 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + ++ +PV+ F V + ++E N L+I++++ G +T+ DC+ +S+ IS I Sbjct: 6 IEEIVAEFAEPVVANHYFELVDVEFIKEGTNWYLRIYIDKP-GGITIDDCQIISEEISDI 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD ++ IE Y LEVSSPG+DRP+ ++SDF R+ G +V ++ ++ G ++G Sbjct: 65 LDKKDPIEQSYFLEVSSPGLDRPLKKESDFERFKGELVEVKVFKPIDGRKIFEGNLLG 122 >gi|225075065|ref|ZP_03718264.1| hypothetical protein NEIFLAOT_00064 [Neisseria flavescens NRL30031/H210] gi|224953549|gb|EEG34758.1| hypothetical protein NEIFLAOT_00064 [Neisseria flavescens NRL30031/H210] Length = 143 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 74/149 (49%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI S++ + + + V L + + L++F++++ G +T+ DC +S +S + VE Sbjct: 2 DIQSILDKTLPGLGYELVDFELTAQGD--LRVFIDKE-GGITVEDCATVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +I + RLE+SSPG+DRP+ + +DF+R+ G + L ++ IG+I Sbjct: 59 DI--DYKRLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIDGQKNFIGRIESCENDIV 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + I ++ ARL Sbjct: 117 TVSFDGK--------TAQIELSNIDKARL 137 >gi|225390158|ref|ZP_03759882.1| hypothetical protein CLOSTASPAR_03908 [Clostridium asparagiforme DSM 15981] gi|225043752|gb|EEG53998.1| hypothetical protein CLOSTASPAR_03908 [Clostridium asparagiforme DSM 15981] Length = 156 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 70/142 (49%), Gaps = 2/142 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + + P++EE F V + ++E L+ +++++ G + + DCE +S+ + L Sbjct: 9 ESRVEAYLLPLMEEHHFELVDVEYVKEAGTWYLRAYIDKE-GGIAVDDCEVISRKLGDWL 67 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D E+ I Y LEVSSPG+ RP+ ++ DF+R G V + +++ G + Sbjct: 68 DKEDFISESYILEVSSPGLGRPLKKEKDFVRSLGKDVEVRLYRMRDKQKEFTGALSAYDA 127 Query: 141 TGFFLEKEKRGEKDMNELQIAI 162 L+ E + + IA+ Sbjct: 128 QTVTLDMEDGSQMVFDRADIAL 149 >gi|229824766|ref|ZP_04450835.1| hypothetical protein GCWU000182_00115 [Abiotrophia defectiva ATCC 49176] gi|229791095|gb|EEP27209.1| hypothetical protein GCWU000182_00115 [Abiotrophia defectiva ATCC 49176] Length = 155 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 39/142 (27%), Positives = 73/142 (51%), Gaps = 2/142 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++I P+I + ++ V + + E N L+ +V+++ G ++ DCE++S+ S +L Sbjct: 8 EKKAEALILPIINKNNYELVDVEFVREGSNWFLRAYVDKE-GGFSVNDCEKVSREFSDLL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D E+ IE Y LE+SSPG+ RP+ + DF R G V ++ + ++++ G + Sbjct: 67 DKEDFIEESYILEISSPGLGRPLKKDKDFERSIGEEVEVKLYKAFEEQKEFSGTLEAYDA 126 Query: 141 TGFFLEKEKRGEKDMNELQIAI 162 + E EK IA+ Sbjct: 127 QTVTIGFEDNTEKTFERKNIAL 148 >gi|303229567|ref|ZP_07316355.1| conserved hypothetical protein [Veillonella atypica ACS-134-V-Col7a] gi|303232094|ref|ZP_07318797.1| conserved hypothetical protein [Veillonella atypica ACS-049-V-Sch6] gi|302513200|gb|EFL55239.1| conserved hypothetical protein [Veillonella atypica ACS-049-V-Sch6] gi|302515692|gb|EFL57646.1| conserved hypothetical protein [Veillonella atypica ACS-134-V-Col7a] Length = 152 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 79/153 (51%), Gaps = 9/153 (5%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + +SSV++ VI + V + + E++ L++++++ G + L DC+ +S+ +S Sbjct: 5 AVEEFVSSVVEGVIAGTNLELVDVDYVRERDWYLRVYLDKP-GGVDLDDCQMVSEKLSAA 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD ++ I +Y LEVSSPG+DR + + DF+R+NG V ++ ++ G + G + Sbjct: 64 LDEKDPIAENYLLEVSSPGLDRVLKKDKDFIRYNGRDVDIQLFKPINGSKQYTGVLQGFT 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +T E +N + ++ RL Sbjct: 124 DTTI--------EFSINGESVTFERSAIAQIRL 148 >gi|294142062|ref|YP_003558040.1| hypothetical protein SVI_3291 [Shewanella violacea DSS12] gi|293328531|dbj|BAJ03262.1| conserved hypothetical protein [Shewanella violacea DSS12] Length = 151 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 74/154 (48%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + +++ +E + R + ++ K+ L+++++ D G + + DC E S+ IS + Sbjct: 4 IEKKLEEMLKSPVEALGHRLWGLEYIQAGKHSTLRVYIDNDKG-IFIEDCAETSRQISAV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ + + V ++ + + L G ++G Sbjct: 63 LDVEDPISTEYTLEVSSPGVDRPLFSSEQYASYIDETVKIQLTMPVAGSRNLKGTVIGVE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + ++ I+ D++ LI Sbjct: 123 GQMLTISVDGN--------ELIIALDNIRRGNLI 148 >gi|91792365|ref|YP_562016.1| hypothetical protein Sden_1005 [Shewanella denitrificans OS217] gi|123166362|sp|Q12QI3|RIMP_SHEDO RecName: Full=Ribosome maturation factor rimP gi|91714367|gb|ABE54293.1| protein of unknown function DUF150 [Shewanella denitrificans OS217] Length = 151 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 72/154 (46%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + ++ +E + F I + ++ ++++F++ + G + + DC E S+ +S + Sbjct: 4 IESRLVEMLTVPVEALGFELWGIEFVHAGRHSIVRVFIDSEKG-IFIEDCAETSRQVSAV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ + + + G ++ + + L G I Sbjct: 63 LDVEDPITTEYTLEVSSPGVDRPLFTAAQYQAYIGEDAKVQLTMPVAGSRNLKGVISKVE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + + + I+ D++ +I Sbjct: 123 GQILTLNVDGK--------DLIIALDNIRKGNII 148 >gi|88860546|ref|ZP_01135184.1| hypothetical protein PTD2_16017 [Pseudoalteromonas tunicata D2] gi|88817744|gb|EAR27561.1| hypothetical protein PTD2_16017 [Pseudoalteromonas tunicata D2] Length = 141 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 75/147 (51%), Gaps = 10/147 (6%) Query: 28 VIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 +++P +E + F + + +++ ++ L+++++ +G + + +C ++S+ +S ILDVE+ I Sbjct: 1 MLEPAVEALGFELLGLEVVQAGRDSTLRLYIDHANG-INVDNCADVSRQVSAILDVEDPI 59 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE 146 Y LEVSSPG+DRP+ + F++ G + L ++ G ++ L Sbjct: 60 TNEYNLEVSSPGLDRPLFKPEHFIKAQGEEIRLRTKLPQDGRRNFKGDLILLDGDMLTLR 119 Query: 147 KEKRGEKDMNELQIAISFDSLLSARLI 173 + + + + ++ A +I Sbjct: 120 IDNK--------DVMVMLGNVEKANII 138 >gi|225016951|ref|ZP_03706143.1| hypothetical protein CLOSTMETH_00866 [Clostridium methylpentosum DSM 5476] gi|224950265|gb|EEG31474.1| hypothetical protein CLOSTMETH_00866 [Clostridium methylpentosum DSM 5476] Length = 177 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 73/136 (53%), Gaps = 2/136 (1%) Query: 13 PRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEE 71 R+ G ++++++P+++++ + +E + L++F+++ DG M + DCE Sbjct: 19 GRMAGKGNTVSAVTALVKPIVDDLGLILWDVVFEKEGASWFLRVFIDK-DGIMEVDDCEA 77 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+ ++P+LD + IE Y LEVSS G+ R + R F R+ G V ++ + +++ Sbjct: 78 VSKRLNPLLDETDPIEQSYYLEVSSAGLGRRLKRPEHFARFLGDEVTVKLYRAVDKRKEF 137 Query: 132 IGKIMGTSETGFFLEK 147 +G + + L + Sbjct: 138 VGVLAAFEDNTVVLRE 153 >gi|306842730|ref|ZP_07475372.1| Protein of unknown function DUF150 [Brucella sp. BO2] gi|306287074|gb|EFM58579.1| Protein of unknown function DUF150 [Brucella sp. BO2] Length = 158 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 56/133 (42%), Positives = 82/133 (61%), Gaps = 2/133 (1%) Query: 56 FVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGH 115 ER DG MT+ DCE +S+ ++P+LDVE+ I G Y LE+SSPGIDRP+VRKSDF W GH Sbjct: 1 MAERPDGTMTVDDCELVSRTVAPVLDVEDPISGKYHLEISSPGIDRPLVRKSDFSDWAGH 60 Query: 116 VVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + E + ++KL G+I+ +E ++ NE + I FD + ARL++T Sbjct: 61 IAKVETSIVHEGRKKLRGRIVVGDADSVTIESDQISY--GNEPVVRIPFDLISDARLVLT 118 Query: 176 DELLRASLNNYGS 188 D+L+R +L + Sbjct: 119 DDLIRDALRKDKA 131 >gi|294670567|ref|ZP_06735446.1| hypothetical protein NEIELOOT_02289 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307692|gb|EFE48935.1| hypothetical protein NEIELOOT_02289 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 143 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 73/149 (48%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++ + + + V L + L++F++++ G +T+ DC +S +S + VE Sbjct: 2 DIQQILDKTLPGLGYELVDFELTAQG--TLRVFIDKE-GGITVEDCATVSNHLSRLFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 ++ + LE+SSPG+DRP+ + +DF+R+ G + L ++ IG+I Sbjct: 59 DV--DYKNLEISSPGLDRPLKKTADFVRFAGQQAKIKTRLPIDGQKNFIGRIEACENDIV 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 L + + +I +++ ARL Sbjct: 117 TLSFDGK--------TASIEINNIDKARL 137 >gi|167766536|ref|ZP_02438589.1| hypothetical protein CLOSS21_01042 [Clostridium sp. SS2/1] gi|167711659|gb|EDS22238.1| hypothetical protein CLOSS21_01042 [Clostridium sp. SS2/1] Length = 154 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 40/161 (24%), Positives = 80/161 (49%), Gaps = 10/161 (6%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELS 73 + + + ++ P+IE +F V + ++E N L+++ +++ G + + DC +S Sbjct: 1 MARRVDIETKTEELVLPIIEANNFELVDVEYVKEGANWYLRVYADKE-GGIAIDDCVLIS 59 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 +++ LD E+ IE Y LEVSSPG+ RP+ ++ D++R G + ++ + +++ G Sbjct: 60 RSLEEKLDAEDFIEDAYILEVSSPGLGRPLKKEKDYVRSVGKSIDIKLYKAIDKQKEFTG 119 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E L E + I S+ SARL + Sbjct: 120 ILKENMEDQIVLTIEDQ--------DITFEKKSIASARLSL 152 >gi|315126156|ref|YP_004068159.1| hypothetical protein PSM_A1065 [Pseudoalteromonas sp. SM9913] gi|315014670|gb|ADT68008.1| hypothetical protein PSM_A1065 [Pseudoalteromonas sp. SM9913] Length = 141 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 72/147 (48%), Gaps = 10/147 (6%) Query: 28 VIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 ++ P +E + F + ++ ++ L++++ +DG +++ +C + S+ IS ILDVE+ I Sbjct: 1 MLTPAVEMLGFELHGLEFVQAGRHSTLRVYIAHEDG-ISVDNCADASRQISAILDVEDPI 59 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE 146 Y LEVSSPG+DRP+ ++ + + G V L ++ G ++ S L Sbjct: 60 TNEYDLEVSSPGVDRPLFKQDHYEQAQGEEVRVRTKLPQDGRRNFKGDLIAVSSDMITLS 119 Query: 147 KEKRGEKDMNELQIAISFDSLLSARLI 173 + + I ++ A +I Sbjct: 120 SDG--------AEHLIMLSNIERANII 138 >gi|319637702|ref|ZP_07992468.1| hypothetical protein HMPREF0604_00091 [Neisseria mucosa C102] gi|317400857|gb|EFV81512.1| hypothetical protein HMPREF0604_00091 [Neisseria mucosa C102] Length = 143 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 74/149 (49%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI S++ + + + V L + + L+IF++++ G +T+ DC +S +S + VE Sbjct: 2 DIQSILDKTLPGLGYELVDFELTAQGD--LRIFIDKE-GGITVEDCATVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +I + RLE+SSPG+DRP+ + +DF+R+ G + L ++ IG+I Sbjct: 59 DI--DYKRLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIDGQKNFIGRIESCENDIV 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + I ++ ARL Sbjct: 117 TVSFDGK--------TAQIELSNIDKARL 137 >gi|330722349|gb|EGH00206.1| NusA [gamma proteobacterium IMCC2047] Length = 150 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 39/160 (24%), Positives = 82/160 (51%), Gaps = 14/160 (8%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELS 73 + DMGL + +++PV+E + + +++ + L++++E D G + + DCE +S Sbjct: 1 MVSDMGL----TELVRPVVEGLELEFWGLEMVVQGREKTLRVYIESDKG-IAVEDCEAVS 55 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 + +S + DVE+ I G Y LEVSSPG+DRP+ + F ++ G V ++ + ++ G Sbjct: 56 RQLSSLFDVEDPIAGEYTLEVSSPGLDRPLFEAAQFAQYVGETVKIKLRSAFEGRRNFRG 115 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + G + + + + + +S+ A ++ Sbjct: 116 ALSGVEDDEVIIVVDGH--------EYILPIESVEKANIV 147 >gi|51892656|ref|YP_075347.1| hypothetical protein STH1518 [Symbiobacterium thermophilum IAM 14863] gi|81388945|sp|Q67P90|RIMP_SYMTH RecName: Full=Ribosome maturation factor rimP gi|51856345|dbj|BAD40503.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM 14863] Length = 160 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 5/155 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 L + + P + V + L++E L+++++++ G + DCE LS+ + Sbjct: 8 LEELVEELAAPHAAALGLELVGVELVKEGAYRYLRVYIDKE-GGVGFDDCEALSRVVDAQ 66 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + EVSSPG+DRP+ R++DF R+ GH V ++ +G++ G Sbjct: 67 LDEILPNPPYDFFEVSSPGLDRPLKREADFARYVGHKVVVTTYAPVDGQKSFVGELQGLV 126 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + L E IA+ + SARL V Sbjct: 127 DGRVTLTL---TEGKGRGQTIALDRKQVASARLYV 158 >gi|241760269|ref|ZP_04758364.1| conserved hypothetical protein [Neisseria flavescens SK114] gi|261379746|ref|ZP_05984319.1| hypothetical protein NEISUBOT_03607 [Neisseria subflava NJ9703] gi|241319147|gb|EER55625.1| conserved hypothetical protein [Neisseria flavescens SK114] gi|284797424|gb|EFC52771.1| hypothetical protein NEISUBOT_03607 [Neisseria subflava NJ9703] Length = 143 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 74/149 (49%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI S++ + + + V L + + L++F++++ G +T+ DC +S +S + VE Sbjct: 2 DIQSILDKTLPGLGYELVDFELTAQGD--LRVFIDKE-GGITVEDCATVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +I + RLE+SSPG+DRP+ + +DF+R+ G + L ++ IG+I Sbjct: 59 DI--DYKRLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIDGQKNFIGRIESCENDIV 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + I ++ ARL Sbjct: 117 TVSFDGK--------TAQIELSNIDKARL 137 >gi|71281315|ref|YP_268926.1| hypothetical protein CPS_2201 [Colwellia psychrerythraea 34H] gi|91208404|sp|Q482U1|RIMP_COLP3 RecName: Full=Ribosome maturation factor rimP gi|71147055|gb|AAZ27528.1| conserved hypothetical protein [Colwellia psychrerythraea 34H] Length = 151 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 76/153 (49%), Gaps = 10/153 (6%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++ +++P +EE I + N +L++F++ ++G + + DC E+S+ + IL Sbjct: 5 EQKLTDLLRPAVEETGKTLHGIEYISAGNNSVLRLFIDHENG-INVDDCAEVSRQVGAIL 63 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+DRP+ + F G + +I + ++K G ++ Sbjct: 64 DVEDPISSEYSLEVSSPGVDRPLFELAHFQEVIGETINVKISMPLNGRRKFKGPLVAIEN 123 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 +E ++ + ++ ++ A L+ Sbjct: 124 DTLIVE--------VDSIDYELAISNIDKANLV 148 >gi|257468348|ref|ZP_05632442.1| putative cytoplasmic protein [Fusobacterium ulcerans ATCC 49185] gi|317062621|ref|ZP_07927106.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] gi|313688297|gb|EFS25132.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] Length = 159 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 44/155 (28%), Positives = 76/155 (49%), Gaps = 10/155 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISP 78 + I +++ PV+ EM V I L++ ++I+VE +G++TL DC +S I Sbjct: 8 NILKKIETIVTPVVNEMELSLVDIEYLQDGGYWYVRIYVENPEGDITLEDCAAISNKIDE 67 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 D++ +IE + LEVSSPGI+RP+ + D++R+ G + D + G I Sbjct: 68 --DIDKLIEQRFFLEVSSPGIERPLKKIEDYIRFKGEKAKLSLKHKVDDNKNFEGIITDC 125 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 ++ +LE E + I F + A L+ Sbjct: 126 KDSIIYLELEDEKV-------MEIPFSEVRKANLV 153 >gi|238927233|ref|ZP_04658993.1| protein of hypothetical function DUF150 [Selenomonas flueggei ATCC 43531] gi|238884908|gb|EEQ48546.1| protein of hypothetical function DUF150 [Selenomonas flueggei ATCC 43531] Length = 163 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 76/163 (46%), Gaps = 13/163 (7%) Query: 11 YEPRIFGDMGLAGDISSVIQPVIEEMS-FRSVQISLLEEKNLLLQIFVERDDGNMTLRDC 69 YE R + + +++ ++ ++ V + ++E++ L++++++ G + + DC Sbjct: 9 YEKRESMSAKIEERVEEMVRGLLTDLPAIELVDVEYVKERDSYLRVYIDK-TGGIDIDDC 67 Query: 70 EELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ 129 + LS+ + +LD E+ I Y LEVSSPG+DR + ++ DF R +G V + K+ Sbjct: 68 QSLSERLEEMLDREDFIPDAYILEVSSPGLDRVLRKERDFTREHGRTVDVTLYAPFEGKK 127 Query: 130 KLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + G + G L+ + I + RL Sbjct: 128 QWTGTLAGYDGETLTLDDG-----------VQIPMKQVSQVRL 159 >gi|332653589|ref|ZP_08419334.1| conserved hypothetical protein [Ruminococcaceae bacterium D16] gi|332518735|gb|EGJ48338.1| conserved hypothetical protein [Ruminococcaceae bacterium D16] Length = 151 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 70/146 (47%), Gaps = 4/146 (2%) Query: 19 MGLAGDISS-VIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAI 76 M ++++ + QP +E + ++E L+ +++++ G +++ DCE +S+ + Sbjct: 1 MAKVTEMAAQLAQPFVEAAGCSLWDVEYVKEAGEWYLRFYIDKE-GGVSINDCEAVSRPL 59 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 S LD + IEG Y LEVSS G DR + + F ++ G V ++ + ++ +G + Sbjct: 60 SDALDEADPIEGSYTLEVSSAGADRALKKPEHFAQFQGAEVEVKLYRARDGRKDYVGLLE 119 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAI 162 + L + ++A+ Sbjct: 120 SYEDGDVTLNV-GGAPMKFEKKELAL 144 >gi|227529105|ref|ZP_03959154.1| protein of hypothetical function DUF150 [Lactobacillus vaginalis ATCC 49540] gi|227350949|gb|EEJ41240.1| protein of hypothetical function DUF150 [Lactobacillus vaginalis ATCC 49540] Length = 165 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 76/158 (48%), Gaps = 8/158 (5%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + +S + +P++ + + ++E K+ L+++V++ DG +TL DC ++S +S Sbjct: 8 NVVEIVSGLAKPILAKHDCYLYDLEFVKEGKSWYLRVYVDK-DGGVTLEDCADISDELSE 66 Query: 79 ILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 LD + I Y LEVSSPG +RP+ +++D+ R + + K+ G ++ Sbjct: 67 ALDNTEPDPIPQAYFLEVSSPGAERPLKKEADYERAINDYIHVSLYQQIEGKKAYEGTLV 126 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + LE + + +I I + ARL + Sbjct: 127 ELTPDELTLEYMDKTR----QRRIKIERKMIAQARLAI 160 >gi|332799220|ref|YP_004460719.1| Ribosome maturation factor rimP [Tepidanaerobacter sp. Re1] gi|332696955|gb|AEE91412.1| Ribosome maturation factor rimP [Tepidanaerobacter sp. Re1] Length = 157 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 39/151 (25%), Positives = 73/151 (48%), Gaps = 11/151 (7%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + ++ +E F + + ++E N L+ ++++ G +T+ DC+ +S + +LD Sbjct: 8 KKLWNLGYKAVEAAGFELIDMEFVKESGNWYLRYYIDKP-GGITIDDCQTVSVEVGRLLD 66 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + ++I Y LEVSSPG++RP+ DFLR+ G V + GDK+ G + S Sbjct: 67 IADLIPCSYILEVSSPGLERPIKTDKDFLRYIGSFVEIKTFEKIGDKKVFTGILEDYSNN 126 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ N I + + SA+L Sbjct: 127 TVTVK---------NGECYLIPKEKISSAKL 148 >gi|212634072|ref|YP_002310597.1| hypothetical protein swp_1216 [Shewanella piezotolerans WP3] gi|212555556|gb|ACJ28010.1| Conserved hypothetical protein [Shewanella piezotolerans WP3] Length = 141 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 73/147 (49%), Gaps = 10/147 (6%) Query: 28 VIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 +++ +E + + ++ K+ +L+++++ + G + + DC E S+ +S ++DVE+ I Sbjct: 1 MLKAPVEALGHELWGLEYIQAGKHSILRLYIDNEKG-IFIEDCAETSRQVSAVMDVEDPI 59 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE 146 Y LEVSSPG+DRP+ + + G V ++ + + L G ++G L Sbjct: 60 STEYTLEVSSPGVDRPLFTAEQYQLYIGETVKVQVTMPVAGSRNLKGTVIGIEGQMLTLS 119 Query: 147 KEKRGEKDMNELQIAISFDSLLSARLI 173 + ++ I+ D++ LI Sbjct: 120 VDGN--------ELIIALDNIRKGNLI 138 >gi|253701582|ref|YP_003022771.1| hypothetical protein GM21_2984 [Geobacter sp. M21] gi|259585778|sp|C6E2Q3|RIMP_GEOSM RecName: Full=Ribosome maturation factor rimP gi|251776432|gb|ACT19013.1| protein of unknown function DUF150 [Geobacter sp. M21] Length = 160 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 80/163 (49%), Gaps = 13/163 (7%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ +I V + V + E +++++++F+E+ +G + L DC E+S+ Sbjct: 1 MAKVDVVERVTEIIAEVGAPLGIELVDLEYKREGRDMVVRVFLEKREGGINLDDCAEVSR 60 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD-----KQ 129 +S ILDVE+ + Y LEVSSPGI RP+ + D+ R+ GH++ + D ++ Sbjct: 61 QLSDILDVEDFMPERYTLEVSSPGICRPLKKVVDYERFMGHLIKVKTFEMLPDEAGNKRK 120 Query: 130 KLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 GK+ G ++ ++ + + D + A L Sbjct: 121 TFTGKLTGIADGVIGIDLTE-------GQHARVPLDKVAKAHL 156 >gi|262197039|ref|YP_003268248.1| hypothetical protein Hoch_3856 [Haliangium ochraceum DSM 14365] gi|262080386|gb|ACY16355.1| protein of unknown function DUF150 [Haliangium ochraceum DSM 14365] Length = 209 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 83/183 (45%), Gaps = 21/183 (11%) Query: 7 LHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVER------ 59 H + + + + + + +PV + V +SL + + L+Q+F++ Sbjct: 18 AHLFFTRGMRANDSMTEQLMRIAEPVCASAGYELVDLSLTQSRVGWLVQVFIDHMHSDET 77 Query: 60 -------DDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRW 112 + ++L DCE +S+ +S +LDVE+ + Y LEVSSPG+DRP+ + F R+ Sbjct: 78 STVAGGEEASEVSLEDCEHVSRELSAVLDVEDPLPFAYNLEVSSPGLDRPLRTVAHFQRF 137 Query: 113 NGHVVACEIVLSSG--DKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 GH V + + ++ G++ S E +++ + D + SA Sbjct: 138 AGHEVKVRLDGTGDATGRRNFKGRLEAVSA-----EAPASIVVNVDGAPHTLLIDDIESA 192 Query: 171 RLI 173 R++ Sbjct: 193 RVV 195 >gi|259016312|sp|Q3IJ55|RIMP_PSEHT RecName: Full=Ribosome maturation factor rimP Length = 151 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 74/156 (47%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 L D+ +++ P +E + F + ++ ++ L++++ + G +++ +C + S+ IS Sbjct: 2 TKLEQDLVAMLTPAVEMLGFELHGLEFVQAGRHSTLRVYITHEAG-ISVDNCADASRQIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ILDVE+ I Y LEVSSPG+DR + ++ + + G V L ++ G ++ Sbjct: 61 AILDVEDPITNEYDLEVSSPGVDRLLFKQDHYEQAQGEEVQLRTKLPQDGRRNFKGDLIA 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + L + + I ++ A +I Sbjct: 121 VTSDMITLSSDG--------TEHLIMLSNIERANII 148 >gi|325267088|ref|ZP_08133757.1| protein of hypothetical function DUF150 [Kingella denitrificans ATCC 33394] gi|324981441|gb|EGC17084.1| protein of hypothetical function DUF150 [Kingella denitrificans ATCC 33394] Length = 145 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 76/149 (51%), Gaps = 11/149 (7%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 D+ +++ + M + V + L + +L++F++++ G +T+ DC +S +S + VE Sbjct: 2 DLQQILETTLPGMGYELVDVELTAQG--ILRVFIDKE-GGITVEDCATVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 ++ + LE+SSPG+DRP+ + +DF+R+ G +V + L ++ IG+I E Sbjct: 59 DV--DYKHLEISSPGLDRPLKKAADFVRFTGSMVKLKTRLPVDGQKNFIGRIESFDEAAQ 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + I ++ AR+ Sbjct: 117 TI------VLAFDGKTAQIELSNVDKARI 139 >gi|187933637|ref|YP_001885467.1| hypothetical protein CLL_A1269 [Clostridium botulinum B str. Eklund 17B] gi|226695891|sp|B2TJ51|RIMP_CLOBB RecName: Full=Ribosome maturation factor rimP gi|187721790|gb|ACD23011.1| conserved hypothetical protein [Clostridium botulinum B str. Eklund 17B] Length = 153 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 83/153 (54%), Gaps = 10/153 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + +++P++EE+S+ + ++E L+I++++++ +++L DCE++S+ +S I Sbjct: 6 LLEKVEVLVKPIVEELSYELYYLEYVKENGEYYLRIYIDKEEDSISLNDCEKVSRRVSEI 65 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ IE Y LEVSSPG++R + ++ F ++ G V S +K+ G + Sbjct: 66 LDVEDPIEDSYYLEVSSPGLNRGLYKEEHFKKFIGREVLVRFNGSLEGMKKIQGILKEAD 125 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ EK+ + I + + A L Sbjct: 126 NEFITVQGEKK---------LKIPTEKIKGANL 149 >gi|157825876|ref|YP_001493596.1| hypothetical protein A1C_04075 [Rickettsia akari str. Hartford] gi|166979960|sp|A8GNW3|RIMP_RICAH RecName: Full=Ribosome maturation factor rimP gi|157799834|gb|ABV75088.1| hypothetical protein A1C_04075 [Rickettsia akari str. Hartford] Length = 166 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 47/164 (28%), Positives = 90/164 (54%), Gaps = 9/164 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-MTLRDCEELSQAISPI 79 + I++VI+ + +M F V I + +++I ++ +G +++ DC + S IS I Sbjct: 4 IEQQITNVIEKSLTDMGFELVLIKFKGVNHKVVEILIDSLNGEKISVADCTKASSTISAI 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE++IE Y LEV+S G++RP+V+ ++ R+ G V ++ K + GKI+ Sbjct: 64 LDVEDLIEDAYSLEVASSGLERPLVKFENYNRFLGREVKVKLKELLNGKTRYQGKIIKAE 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 +L+ E ++ I +D + +A L++T+E+L+ L Sbjct: 124 NNKVYLKCE--------AQEVLIDYDLIKNANLVLTEEVLKKLL 159 >gi|293115578|ref|ZP_05792144.2| putative cytoplasmic protein [Butyrivibrio crossotus DSM 2876] gi|292808915|gb|EFF68120.1| putative cytoplasmic protein [Butyrivibrio crossotus DSM 2876] Length = 166 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 2/144 (1%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISP 78 + + +I P+IE F V + ++E + L+ ++++ G +T+ DC E+S+ S Sbjct: 17 DIESKATELIMPIIESCGFELVDLEYVKEGSSKYLRAYIDKP-GGITVDDCAEVSRPFSD 75 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LD + I+ Y LEVSSPG+ RP + DF R V ++ + G + Sbjct: 76 KLDEADFIDEAYILEVSSPGLFRPFKKDKDFERNLMEEVELKLYRQVDHLKDYTGLLKKF 135 Query: 139 SETGFFLEKEKRGEKDMNELQIAI 162 + +E E EK + +AI Sbjct: 136 DKDTVTIELENGDEKTFDRSNLAI 159 >gi|251780527|ref|ZP_04823447.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084842|gb|EES50732.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 153 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 83/153 (54%), Gaps = 10/153 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + +++P++EE+S+ + ++E L+I++++++ +++L DCE++S+ +S + Sbjct: 6 LLEKVEVLVKPIVEELSYELYYLEYVKENGEYYLRIYIDKEEDSISLNDCEKVSRRVSEM 65 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ IE Y LEVSSPG++R + ++ F ++ G V S +K+ G + Sbjct: 66 LDVEDPIEDSYYLEVSSPGLNRGLYKEEHFKKFIGREVLVRFNGSLEGMKKIQGILKDAD 125 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +E EK ++ I + + A L Sbjct: 126 NEFITVEAEK---------ELKIPTEKIKGANL 149 >gi|88705683|ref|ZP_01103393.1| conserved hypothetical protein [Congregibacter litoralis KT71] gi|88700196|gb|EAQ97305.1| conserved hypothetical protein [Congregibacter litoralis KT71] Length = 167 Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 75/164 (45%), Gaps = 10/164 (6%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCE 70 + R + +++ P +E + F L + K+ +L++++E ++G + + DC Sbjct: 11 DDRRRAMSARENKLQALLAPTVEALGFELWGTEYLIQGKHSVLRLYIESENG-VQVTDCA 69 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 +S+ + +LDVE I G Y LEVSSPG+DR + R + + G V + ++K Sbjct: 70 AVSEQVGALLDVEEPISGEYVLEVSSPGVDRRLFRLEQYPGYVGEEVELRLRSPFEGRRK 129 Query: 131 LIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G + G + L + + + F + A+L + Sbjct: 130 FKGILRGVEDEDIVLLVDDH--------EYLLPFGDVDRAQLTL 165 >gi|85860523|ref|YP_462725.1| hypothetical protein SYN_01790 [Syntrophus aciditrophicus SB] gi|123517502|sp|Q2LWU4|RIMP_SYNAS RecName: Full=Ribosome maturation factor rimP gi|85723614|gb|ABC78557.1| hypothetical protein SYN_01790 [Syntrophus aciditrophicus SB] Length = 160 Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats. Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 6/154 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L DI + +PVI V++ L K L++I+++R+ G +TL DC E+S + + Sbjct: 9 LREDIWQLAEPVIASEGLELVEVECLRMKTRWLVRIYMDRE-GGVTLDDCSEISNQLGDV 67 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV ++ Y LEVSSPG+DRP+VR DF+R+ G V+ + + G+++ Sbjct: 68 LDVHDLPPDPYTLEVSSPGLDRPLVRDKDFVRYQGCEVSIRLEQKVDGIRNFRGRLLEYV 127 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 E + K +M I D ++ A L+ Sbjct: 128 EE----DGRKILVIEMASKLYRIPRDLIVKANLV 157 >gi|304437179|ref|ZP_07397140.1| protein of hypothetical function DUF150 [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369841|gb|EFM23505.1| protein of hypothetical function DUF150 [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 163 Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 78/163 (47%), Gaps = 13/163 (7%) Query: 11 YEPRIFGDMGLAGDISSVIQPVIEEMS-FRSVQISLLEEKNLLLQIFVERDDGNMTLRDC 69 YE R + + +++ ++ + V + ++E++ L++++++ G + + DC Sbjct: 9 YEKRESMSAKIEERVEEMVRGLLTDSPAIELVDVEYVKERDYYLRVYIDKA-GGIDIDDC 67 Query: 70 EELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ 129 + LS+ + ILD E++I Y LEVSSPG+DR + ++ DF+R +G VV + K+ Sbjct: 68 QRLSERLEEILDREDVIPDAYTLEVSSPGLDRVLRKERDFVREHGRVVDVTLYAPFEGKK 127 Query: 130 KLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + G + G L+ I I + RL Sbjct: 128 QWTGTLAGYDGETLTLDDG-----------IRIPMQQVSQVRL 159 >gi|172057850|ref|YP_001814310.1| hypothetical protein Exig_1841 [Exiguobacterium sibiricum 255-15] gi|226696098|sp|B1YI66|RIMP_EXIS2 RecName: Full=Ribosome maturation factor rimP gi|171990371|gb|ACB61293.1| protein of unknown function DUF150 [Exiguobacterium sibiricum 255-15] Length = 155 Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 77/157 (49%), Gaps = 6/157 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 + + + +P++E V + ++E + L++ +++ DG + L DC +++ +S Sbjct: 2 TNVTEKVEQLAKPIVEREGMELVDVEFVKEGADWFLRVSIDK-DGGVDLEDCVNINEKLS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 L+ ++ I+ Y L+V+SPG +RP+ + DF + G V + D + G ++ Sbjct: 61 EALNQDDPIDEPYYLDVASPGAERPLKKTEDFEKAIGKHVYIKTHDPVKDATEFEGTLLT 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 SE LE + K L+I I + + ARL V Sbjct: 121 YSEEMLELEVRVKTRK----LKIEIPVNKIAMARLAV 153 >gi|116495059|ref|YP_806793.1| hypothetical protein LSEI_1577 [Lactobacillus casei ATCC 334] gi|191638562|ref|YP_001987728.1| hypothetical protein LCABL_17900 [Lactobacillus casei BL23] gi|239631346|ref|ZP_04674377.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066622|ref|YP_003788645.1| hypothetical protein LCAZH_1564 [Lactobacillus casei str. Zhang] gi|122263524|sp|Q038M1|RIMP_LACC3 RecName: Full=Ribosome maturation factor rimP gi|259585801|sp|B3WER9|RIMP_LACCB RecName: Full=Ribosome maturation factor rimP gi|116105209|gb|ABJ70351.1| hypothetical protein LSEI_1577 [Lactobacillus casei ATCC 334] gi|190712864|emb|CAQ66870.1| Putative uncharacterized protein [Lactobacillus casei BL23] gi|239525811|gb|EEQ64812.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439029|gb|ADK18795.1| conserved hypothetical protein [Lactobacillus casei str. Zhang] gi|327382600|gb|AEA54076.1| Ribosome maturation factor rimP [Lactobacillus casei LC2W] gi|327385798|gb|AEA57272.1| Ribosome maturation factor rimP [Lactobacillus casei BD-II] Length = 159 Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 75/158 (47%), Gaps = 8/158 (5%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISP 78 + ++++++P++++ F + ++E L++++++ G +TL +C +S+A+S Sbjct: 5 SVVETVTALVKPILDDHHFYLTDVEFVKEGGGWYLRVYIDK-TGGITLDECVMVSEALSE 63 Query: 79 ILDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 LD + I Y LEVSSPG +RP+ ++D+ + G + + K+ G + Sbjct: 64 KLDAMDPDPIPQQYFLEVSSPGAERPLKHETDYEQAVGDYIHVSLFKKLDGKKVFEGTLK 123 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L + + K I + SARL + Sbjct: 124 ELLPDQLTLTVKDKSRKFDQ----VIDRQLIASARLAI 157 >gi|46578926|ref|YP_009734.1| hypothetical protein DVU0511 [Desulfovibrio vulgaris str. Hildenborough] gi|120603473|ref|YP_967873.1| hypothetical protein Dvul_2430 [Desulfovibrio vulgaris DP4] gi|51316683|sp|Q72EQ8|RIMP_DESVH RecName: Full=Ribosome maturation factor rimP gi|166987475|sp|A1VG80|RIMP_DESVV RecName: Full=Ribosome maturation factor rimP gi|46448338|gb|AAS94993.1| conserved hypothetical protein [Desulfovibrio vulgaris str. Hildenborough] gi|120563702|gb|ABM29446.1| protein of unknown function DUF150 [Desulfovibrio vulgaris DP4] gi|311232784|gb|ADP85638.1| protein of unknown function DUF150 [Desulfovibrio vulgaris RCH1] Length = 172 Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 71/161 (44%), Gaps = 4/161 (2%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 L I+ + P + + I L ++++FV+ +G +T+ C E+S+ Sbjct: 1 MTKQALDATIADMAGPFLASLGLELWGIELSYGGRTVVRLFVDGPEG-VTIDQCAEVSRH 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS---GDKQKLI 132 + L+VE++I Y LEVSSPG++RP R + G + ++ + ++K Sbjct: 60 VGLALEVEDVISSAYVLEVSSPGLERPFFRAEQMSPYVGRQIELTLIDPTPEWPGRRKFR 119 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 G+++ L E + E + S+ + A LI Sbjct: 120 GELLAVEGDTVVLRPEGAPAPEAEEAVLRTSWQGVRKANLI 160 >gi|164688522|ref|ZP_02212550.1| hypothetical protein CLOBAR_02167 [Clostridium bartlettii DSM 16795] gi|164602935|gb|EDQ96400.1| hypothetical protein CLOBAR_02167 [Clostridium bartlettii DSM 16795] Length = 153 Score = 157 bits (398), Expect = 8e-37, Method: Composition-based stats. Identities = 43/156 (27%), Positives = 89/156 (57%), Gaps = 9/156 (5%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISP 78 + I ++QP+++ + V I ++E L+I++E++ G +TL DC E+S+ ++P Sbjct: 4 NIESTIEELVQPIVDARNIEIVDIEYVKEAGQFYLRIYLEKE-GGITLDDCAEVSRELNP 62 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 ILD ++ I+ +Y LEV SPG+DRP+ ++ DF+R+ G+ V ++ ++L G+++G Sbjct: 63 ILDEKDPIKDNYFLEVCSPGLDRPLKKEKDFIRYAGYDVEIKLYKPLNGTKQLEGELIGL 122 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E K+ + ++ ++ + +L V Sbjct: 123 TED-------KKIKVVIDNNEVEFDKKDIALIKLAV 151 >gi|259585805|sp|Q0AFJ1|RIMP_NITEC RecName: Full=Ribosome maturation factor rimP Length = 143 Score = 157 bits (398), Expect = 8e-37, Method: Composition-based stats. Identities = 43/149 (28%), Positives = 77/149 (51%), Gaps = 11/149 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + +++P I M + V I LL++FV++ DG +TL DC +S + +L VEN Sbjct: 3 LFELLEPTIAGMGYELVDIE-QSAPGRLLRVFVDKKDGAITLADCVAVSNHLGQLLAVEN 61 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I + RLEVSSPG+DRP+ +++DF+R+ G + + ++ ++ +G + + Sbjct: 62 I--DYNRLEVSSPGLDRPLKKRADFVRFVGESIRIRLRIALQGQRNFVGTLTEVGDDALM 119 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + + + +L ARLI Sbjct: 120 LNVDGK--------LLQFELKNLEKARLI 140 >gi|237748746|ref|ZP_04579226.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] gi|229380108|gb|EEO30199.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] Length = 162 Score = 157 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 81/157 (51%), Gaps = 14/157 (8%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVE-RDD----GNMTLRDCEELSQAISPI 79 + +I+ + + V + + LL+++++ + + GN++L DCE++S+ +S + Sbjct: 2 LQELIEKTVSGCGYDLVDVE--RAQGNLLRVYIDFKPEDAGRGNISLEDCEKVSRQLSHV 59 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD---KQKLIGKIM 136 L VE++ + RLEVSSPG+DRP+ + +DF+R+ G ++ ++ G ++ Sbjct: 60 LMVEDV--DYDRLEVSSPGLDRPLKKFADFVRFVGMEAHVKLRKPVTGMSNRKTFQGILL 117 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 LE E + E + + L I+ + A L+ Sbjct: 118 APEGDELALEFEGKDENNNSVLHFTIA--DIDKAHLV 152 >gi|304316866|ref|YP_003852011.1| hypothetical protein Tthe_1413 [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778368|gb|ADL68927.1| protein of unknown function DUF150 [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 151 Score = 157 bits (397), Expect = 9e-37, Method: Composition-based stats. Identities = 43/148 (29%), Positives = 82/148 (55%), Gaps = 4/148 (2%) Query: 19 MGLAGDIS-SVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAI 76 M +++ +++ P IE+ +F V + +E N L+++++++ G ++L DC+ +S+ + Sbjct: 1 MSRIEELTRNLVAPAIEKNNFELVDVEYKKEGNNWYLRVYIDKE-GGVSLDDCQIISEYL 59 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 S LD + IE Y LEVSSPGIDRP+ + DF ++ G +V + K+K G+++ Sbjct: 60 SEKLDEVDPIENSYILEVSSPGIDRPLKTQRDFDKFKGSLVEVSLYQPIDKKKKYEGELV 119 Query: 137 GTSETGFFLEKEK-RGEKDMNELQIAIS 163 G + R E D+N++ + Sbjct: 120 GLINDKVVITDNGERKEFDINDISLVKP 147 >gi|34496915|ref|NP_901130.1| hypothetical protein CV_1460 [Chromobacterium violaceum ATCC 12472] gi|51316759|sp|Q7NY15|RIMP_CHRVO RecName: Full=Ribosome maturation factor rimP gi|34102771|gb|AAQ59135.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 141 Score = 157 bits (397), Expect = 9e-37, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 77/149 (51%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 D+ +++ + + + V + ++F+++ G +T+ DC +S + + VE Sbjct: 2 DVRLLLENTLPGLGYELVDFEMTPGGG--FRVFIDKP-GGITVEDCVLVSNHFTRLFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 N+ + RLEVSSPG+DRP+ +++DF+R++G + + + ++K G++ G + Sbjct: 59 NV--DYERLEVSSPGLDRPLKKEADFVRFSGQLAKIKTRMPIEQQKKFTGRLAGVEDGSV 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 L+ + R + I F ++ ARL Sbjct: 117 KLDVDGRI--------VEIPFANIDKARL 137 >gi|238020477|ref|ZP_04600903.1| hypothetical protein GCWU000324_00359 [Kingella oralis ATCC 51147] gi|237867457|gb|EEP68463.1| hypothetical protein GCWU000324_00359 [Kingella oralis ATCC 51147] Length = 145 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 74/149 (49%), Gaps = 11/149 (7%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI S++ + + + V L + L++F+++ G +T+ DC +S +S + VE Sbjct: 2 DIQSILDTTLPGLGYELVDHELTAQG--TLRVFIDKA-GGITVDDCAAVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + LE+SSPG+DRP+ + +DF+R+ G + + L ++ IG++ +++ Sbjct: 59 NI--DYKNLEISSPGLDRPLKKAADFIRFAGSQIKLKTRLPVDGQKNFIGRLEAFNDSTQ 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 L + I ++ ARL Sbjct: 117 TLTL------SFDGKTAEIELGNIDKARL 139 >gi|167625061|ref|YP_001675355.1| hypothetical protein Shal_3149 [Shewanella halifaxensis HAW-EB4] gi|189039835|sp|B0TQA4|RIMP_SHEHH RecName: Full=Ribosome maturation factor rimP gi|167355083|gb|ABZ77696.1| protein of unknown function DUF150 [Shewanella halifaxensis HAW-EB4] Length = 151 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 74/154 (48%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + +++ +E + + + ++ K+ +L+++++ + G + + DC E S+ +S + Sbjct: 4 LERKLVEMLKAPVEALGHQLWGLEYIQAGKHSILRLYIDNEKG-IFIEDCAEASRQVSAV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG++R + + + G V ++ + + L G + G Sbjct: 63 LDVEDPITSEYTLEVSSPGVERLLFTAEQYKAYIGETVKVQLTMPVAGSRNLKGTVTGVD 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + ++ ++ D++ LI Sbjct: 123 GQMLNLSVDGN--------ELIVALDNIRKGNLI 148 >gi|331082959|ref|ZP_08332079.1| ribosome maturation factor rimP [Lachnospiraceae bacterium 6_1_63FAA] gi|330399954|gb|EGG79612.1| ribosome maturation factor rimP [Lachnospiraceae bacterium 6_1_63FAA] Length = 154 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 78/147 (53%), Gaps = 4/147 (2%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 +++P++ E +F V + ++E N L+ ++++ +G +T+ DCE +S+A S L Sbjct: 8 EQKAEVLLEPIVAEHNFELVDVEYVKEGSNFYLRAYIDKPEG-ITVDDCEIVSRAFSQKL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D E+ I+ Y +EVSSPG+ RP+ ++ D+ R G + + +++ G + +E Sbjct: 67 DEEDFIDEAYIMEVSSPGLGRPLKKEKDYKRSMGKELEIRTYRAINKEKEFYGILKEYNE 126 Query: 141 TGFFLEKEKR--GEKDMNELQIAISFD 165 + ++ E + + I ++FD Sbjct: 127 SSVTIDCEGTEMTFQKSDIALIRLAFD 153 >gi|322418687|ref|YP_004197910.1| hypothetical protein GM18_1160 [Geobacter sp. M18] gi|320125074|gb|ADW12634.1| protein of unknown function DUF150 [Geobacter sp. M18] Length = 159 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 41/163 (25%), Positives = 82/163 (50%), Gaps = 14/163 (8%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ +I + + V + E +++++++F+E++ G +TL DC ++S+ Sbjct: 1 MAKVDVVERVTEIITEIGAPLGIGLVDLEYKREGRDMVVRVFLEKE-GGITLDDCADVSR 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD-----KQ 129 +S ILDVE+ + Y LEVSSPGI RP+ + +D+ R+ GH+V + + D ++ Sbjct: 60 QLSDILDVEDFMPERYTLEVSSPGICRPLKKVADYERFMGHLVKVKTFDTLTDDAGNKRK 119 Query: 130 KLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 GK+ G ++ + +I D + A L Sbjct: 120 TFTGKLAGIQGGVVSIDLTE-------GQHASIPLDKVAKANL 155 >gi|297180709|gb|ADI16918.1| uncharacterized protein conserved in bacteria [uncultured gamma proteobacterium HF0010_16J05] Length = 171 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 73/155 (47%), Gaps = 10/155 (6%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPIL 80 I +I P +E + I L + L I++ER DG + + C +S+ + +L Sbjct: 24 EKQIEELIAPTVESLGCEVWGIEYLSQGKYSKLLIYIERADG-IDVDLCATVSKHVGDLL 82 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE +I Y LEVSSPG+DR + ++ +L G V + ++++ G + G + Sbjct: 83 DVEELISSRYTLEVSSPGMDRVLFKEQHYLDHVGERVEIRLNYPFEGRKRISGILAGIED 142 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +++ E + + +++ ARL+ T Sbjct: 143 QTAIVQE--------AEDEFLLPLENVQKARLVPT 169 >gi|259585824|sp|A8ZZ67|RIMP_DESOH RecName: Full=Ribosome maturation factor rimP Length = 161 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 75/163 (46%), Gaps = 11/163 (6%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVER--DDGNMTLRDCEELS 73 G + + +++PV V + +E + +L++++ D +TL DC +S Sbjct: 3 GGNPVVAQMWKLVEPVCSAEGMELVFVEFNKESQGRVLRLYLASGVPDRGVTLEDCAGIS 62 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 + ++ +LDV +Y LEVSS G++RP+ ++ DF R+ G V D++ G Sbjct: 63 RQVNGLLDVYLPELDNYTLEVSSAGLERPLAKEIDFERFAGSRVKIRTAAPVSDRKNFTG 122 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 ++G S+ L + + I + + A+L+ D Sbjct: 123 ILLGVSDGNVRLMVDDK--------TFVIPYGEITRAKLVNED 157 >gi|188589052|ref|YP_001920614.1| hypothetical protein CLH_1220 [Clostridium botulinum E3 str. Alaska E43] gi|226696282|sp|B2V4G5|RIMP_CLOBA RecName: Full=Ribosome maturation factor rimP gi|188499333|gb|ACD52469.1| conserved hypothetical protein [Clostridium botulinum E3 str. Alaska E43] Length = 153 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 83/153 (54%), Gaps = 10/153 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + +++P++EE+S+ + ++E L+I++++++ +++L DCE++S+ +S I Sbjct: 6 LLEKVEVLVKPIVEELSYELYYLEYVKENGEYYLRIYIDKEEDSISLNDCEKVSRRVSEI 65 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ IE Y LEVSSPG++R + ++ F ++ G V S +K+ G + Sbjct: 66 LDVEDPIEDSYYLEVSSPGLNRGLYKEEHFKKFIGREVLVRFNGSLEGMKKIQGILKEAE 125 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +E EK ++ I + + A L Sbjct: 126 NEFITVEGEK---------ELKIPTEKIKGANL 149 >gi|238916822|ref|YP_002930339.1| hypothetical protein EUBELI_00890 [Eubacterium eligens ATCC 27750] gi|259585771|sp|C4Z5N3|RIMP_EUBE2 RecName: Full=Ribosome maturation factor rimP gi|238872182|gb|ACR71892.1| hypothetical protein EUBELI_00890 [Eubacterium eligens ATCC 27750] Length = 156 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 72/149 (48%), Gaps = 2/149 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + +IQPV+E + ++E + L+++++++ G +T+ DC+ +S+A + IL Sbjct: 8 EAKTTELIQPVVEANGVELFDVDYVKEGSDWYLRVYIDKE-GGVTIDDCQNVSRAFNEIL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D EN I+ Y EVSSPG+ RP+ ++ D+ + G ++ ++ ++ G + + Sbjct: 67 DRENYIDDQYIFEVSSPGLTRPLKKEKDYEKSIGRMIEIKLFSPVDKSKEYSGVLKEYDK 126 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLS 169 + + + I + + Sbjct: 127 DTVTISIDDVTKTFDRSNLAMIRWAFVDE 155 >gi|218133588|ref|ZP_03462392.1| hypothetical protein BACPEC_01457 [Bacteroides pectinophilus ATCC 43243] gi|217990963|gb|EEC56969.1| hypothetical protein BACPEC_01457 [Bacteroides pectinophilus ATCC 43243] Length = 155 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 74/142 (52%), Gaps = 2/142 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 +I P+I+ F V + ++E + L++++++ DG +T+ DCE++S+A + IL Sbjct: 8 EKKTEELITPLIDAEGFELVDVEYVKEGADWYLRVYIDK-DGGITVNDCEKISRAFNEIL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D E+ I+ Y EVSSPG+ RP+ + D+ R G ++ ++ ++ ++ + Sbjct: 67 DREDYIDDAYIFEVSSPGLLRPLKKDKDYQRNLGKLLEVKLFAPLNGVKEFEAELKSYDK 126 Query: 141 TGFFLEKEKRGEKDMNELQIAI 162 L + E + +I++ Sbjct: 127 ESATLVMDDDTEVTVKRSEISL 148 >gi|260589531|ref|ZP_05855444.1| putative cytoplasmic protein [Blautia hansenii DSM 20583] gi|260540099|gb|EEX20668.1| putative cytoplasmic protein [Blautia hansenii DSM 20583] Length = 154 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 76/147 (51%), Gaps = 4/147 (2%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++++P++ E F V + ++E N L+ ++++ +G +T+ DCE +S+ S L Sbjct: 8 EQKAEALLEPIVAEHDFELVDVEYVKEGSNFYLRAYIDKPEG-ITVDDCEVVSRTFSQKL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D E+ I+ Y +EVSSPG+ RP+ ++ D+ R G + + +++ G + +E Sbjct: 67 DEEDFIDEAYIMEVSSPGLGRPLKKEKDYKRSMGKELEIRTYRAINKEKEFYGILKEYNE 126 Query: 141 TGFFLEKEKR--GEKDMNELQIAISFD 165 ++ E + + I ++FD Sbjct: 127 RSVTIDCEGTEMTFQKSDIALIRLAFD 153 >gi|150390439|ref|YP_001320488.1| hypothetical protein Amet_2677 [Alkaliphilus metalliredigens QYMF] gi|259585692|sp|A6TRL1|RIMP_ALKMQ RecName: Full=Ribosome maturation factor rimP gi|149950301|gb|ABR48829.1| protein of unknown function DUF150 [Alkaliphilus metalliredigens QYMF] Length = 152 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 40/138 (28%), Positives = 82/138 (59%), Gaps = 2/138 (1%) Query: 26 SSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 +I P++E F V I +E + L++++++ G +TL DC+++S+ +S LD + Sbjct: 9 EDLITPIVEAEQFELVDIEFKKEGPHKYLRVYIDKP-GGITLDDCQKVSEGLSKKLDEAD 67 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I +Y LEVSSPG+DRP+ R+ DFL++ G ++ ++ + ++ + G+++G + Sbjct: 68 PIVENYFLEVSSPGLDRPLKREVDFLKFKGEMIELKLYEAIDGQKTIEGELVGLIDDKIV 127 Query: 145 LEKEKRGEKDMNELQIAI 162 ++ + E +M ++AI Sbjct: 128 IKISETEEVEMPREKVAI 145 >gi|239636257|ref|ZP_04677259.1| conserved hypothetical protein [Staphylococcus warneri L37603] gi|239597612|gb|EEQ80107.1| conserved hypothetical protein [Staphylococcus warneri L37603] Length = 155 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 80/155 (51%), Gaps = 6/155 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 +A + +IQPV+++++F V+I ++E K+ L+I ++++ G + L DC S+ IS Sbjct: 4 IAEQVEPIIQPVLDDLNFELVEIEYVKEGKDHFLRISIDKE-GGVDLNDCTLASEKISEA 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +D + I Y L+V+SPG +RP+ + H + + + ++++ +G + Sbjct: 63 MDENDPIPEMYYLDVASPGAERPIKNEKALKDAISHPIFISLYIPIENEKEWLGILKEVK 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E +++ + I I + + AR V Sbjct: 123 EDIILIEVKEKSKTK----TIEIPRNKIAKARHAV 153 >gi|330685687|gb|EGG97328.1| hypothetical protein SEVCU121_1926 [Staphylococcus epidermidis VCU121] Length = 155 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 80/155 (51%), Gaps = 6/155 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 +A + +IQPV++E+SF V+I ++E K+ L+I ++++ G + L DC S+ IS Sbjct: 4 IAEQVEPIIQPVLDELSFELVEIEYVKEGKDHFLRISIDKE-GGVDLNDCTLASEKISEA 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +D + I Y L+V+SPG +RP+ + H + + + ++++ +G + Sbjct: 63 MDANDPIPEMYYLDVASPGAERPIKNEKALKNAVSHPIFISLYVPIENEKEWLGILKEVK 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E +++ + I I + + AR V Sbjct: 123 EDIILIEVKEKSKTK----TIEIPRNKIAKARHAV 153 >gi|150016082|ref|YP_001308336.1| hypothetical protein Cbei_1198 [Clostridium beijerinckii NCIMB 8052] gi|189038629|sp|A6LSQ0|RIMP_CLOB8 RecName: Full=Ribosome maturation factor rimP gi|149902547|gb|ABR33380.1| protein of unknown function DUF150 [Clostridium beijerinckii NCIMB 8052] Length = 152 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 81/153 (52%), Gaps = 11/153 (7%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L I +++P++ E+S + ++E L+I+++++ G ++L DCE +S+ +S I Sbjct: 6 LIERIEELVRPIVSELSCELYYVEYVKENGEFYLRIYIDKE-GRVSLNDCEAVSRRVSEI 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I+ Y LEVSSPG++R + ++ F ++ G V + S + + G + S Sbjct: 65 LDVEDPIKEAYYLEVSSPGLNRGLYKEEHFKKYIGSEVLIRLTSSLNGVKSVKGLLRDVS 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 E +E E +I I D + +A L Sbjct: 125 EDSILVE---------GETEIQIPRDKIKAANL 148 >gi|85373512|ref|YP_457574.1| hypothetical protein ELI_03425 [Erythrobacter litoralis HTCC2594] gi|122544926|sp|Q2NC14|RIMP_ERYLH RecName: Full=Ribosome maturation factor rimP gi|84786595|gb|ABC62777.1| hypothetical protein ELI_03425 [Erythrobacter litoralis HTCC2594] Length = 188 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 49/174 (28%), Positives = 87/174 (50%), Gaps = 17/174 (9%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLL----EEKNLLLQIFVERD-DGNMTLRDCEELS 73 M ++++I+P + + F V++ ++ + LQI E G + + C ELS Sbjct: 1 MADLARLTALIEPEAKALGFELVRVKMMPSEAGDGGQALQIMAEDPATGQLLIEQCAELS 60 Query: 74 QAISPILDVEN-----IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 + +S ++D +IEG Y LEVSSPGIDRP+ R DF W GH +V Sbjct: 61 RKVSDVIDAAEESGEVLIEGAYHLEVSSPGIDRPLTRPKDFADWAGHEAKVSLVEKIDGH 120 Query: 129 QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS 182 + + G ++G + + GE ++ + + + SA+L++TD+L+ A+ Sbjct: 121 RNMRGILLGIDGETVTIADNRAGE-------VSFALEQIHSAKLVLTDKLIAAT 167 >gi|293374144|ref|ZP_06620478.1| SP14.3 protein [Turicibacter sanguinis PC909] gi|325837436|ref|ZP_08166418.1| hypothetical protein HMPREF9402_1291 [Turicibacter sp. HGF1] gi|292647247|gb|EFF65223.1| SP14.3 protein [Turicibacter sanguinis PC909] gi|325490968|gb|EGC93266.1| hypothetical protein HMPREF9402_1291 [Turicibacter sp. HGF1] Length = 155 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 73/156 (46%), Gaps = 6/156 (3%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISP 78 + +++P+ E + V + ++E N L+++V+ +G + + C ++++A+S Sbjct: 3 NIVAKTEELVKPICEANNVELVDVEYVKEGQNFFLRVYVDTPEG-IDIDQCADVAEALSE 61 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LD + IE Y LEVSSPG +RP+ K G + + + +++ G ++ Sbjct: 62 KLDQHDYIEDEYMLEVSSPGAERPLKTKEAVAESIGAYINVKTYKAIDGQKEFEGHLIKF 121 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E LE + K + + I +D RL + Sbjct: 122 EEDILTLEVLVKTRKKV----VEIPYDKAAKVRLAI 153 >gi|254519188|ref|ZP_05131244.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA] gi|226912937|gb|EEH98138.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA] Length = 152 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 76/154 (49%), Gaps = 11/154 (7%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISP 78 L I +++P+ EE+++ I ++E L+I++++ DG + L DCE LS+ +S Sbjct: 5 ALLETIDQLVRPIAEELNYEIYHIEYVKENGEYYLRIYIDK-DGGIALSDCEALSRRVSD 63 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 ++D ++ I+ Y LEVSSPG++R + F + G + S ++ + G + Sbjct: 64 VMDEKDPIKEAYFLEVSSPGLNRTLFTDDHFKKQIGKEIMVRFTKSLNGRKNIKGILKEV 123 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 S+ +E + I I D + SA L Sbjct: 124 SDDSVIVETDDL---------ITIPKDKIKSANL 148 >gi|296285013|ref|ZP_06863011.1| hypothetical protein CbatJ_15405 [Citromicrobium bathyomarinum JL354] Length = 188 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 52/182 (28%), Positives = 85/182 (46%), Gaps = 19/182 (10%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLL----EEKNLLLQIFVERD-DGNMTLRDCEELS 73 M ++ +I+P + + F V++ ++ + LQI E G + + C LS Sbjct: 1 MADIARLTQIIEPEAQALGFELVRVKMMPSEAGDGTQALQIMAEDPATGQLVIEQCAALS 60 Query: 74 QAISPILDVEN-----IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 +A+S +D +IEG Y LEVSSPGIDRP+ R DF W GH + + Sbjct: 61 RAVSAKIDALEEQGDVLIEGAYHLEVSSPGIDRPLTRTKDFSDWAGHEAKISMAKGYDGQ 120 Query: 129 QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS--LNNY 186 + G + G + K G + + D + SA+L++TDEL+ A+ L+ Sbjct: 121 RNYRGSLKGIEGDMVTITDRKAG-------DVELPRDQIHSAQLVLTDELIAATRPLDTT 173 Query: 187 GS 188 G+ Sbjct: 174 GA 175 >gi|188996514|ref|YP_001930765.1| protein of unknown function DUF150 [Sulfurihydrogenibium sp. YO3AOP1] gi|259645122|sp|B2V8D8|RIMP_SULSY RecName: Full=Ribosome maturation factor rimP gi|188931581|gb|ACD66211.1| protein of unknown function DUF150 [Sulfurihydrogenibium sp. YO3AOP1] Length = 147 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 78/154 (50%), Gaps = 9/154 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 M + + ++ P++EE F+ V I + K +L+I++ +G ++ DCE +S+ I Sbjct: 1 MKVEEKVKELLLPILEERDFKLVDIEFIPSKRPILRIYIYNPEGT-SIDDCEWVSKRIGA 59 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LDVE++I+ Y LEVSSPG+DR ++ + G V + +K+ G ++G Sbjct: 60 LLDVEDLIDKAYILEVSSPGLDRKFKNIEEYDIFKGRDVVVKTKEPINEKKVFKGTLLGL 119 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + NE + I F+++ +L Sbjct: 120 EDEKVKI--------KENEETVEIPFENVSQTKL 145 >gi|259046784|ref|ZP_05737185.1| BCR/YhbC family protein [Granulicatella adiacens ATCC 49175] gi|259036552|gb|EEW37807.1| BCR/YhbC family protein [Granulicatella adiacens ATCC 49175] Length = 167 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 8/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + ++ + + VI++ F + ++E KN L+ ++++ G + L DC +S+ S I Sbjct: 14 VTETVTELTRDVIQKEGFELFDLEFVKEGKNWFLRFYLDKP-GGIDLDDCAFMSEKFSEI 72 Query: 80 LDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + + I Y LEVSSPG +RP+ + + G V + ++ L G ++ Sbjct: 73 LDAQNPDPIPQAYFLEVSSPGAERPLRNEEELKAAIGSYVHLSFYQNIEGEKFLEGTLLS 132 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E L + + + I ++ ARL + Sbjct: 133 VDEETVTLNVQIKTRTK----EFTIERKNIAKARLAI 165 >gi|253581489|ref|ZP_04858714.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] gi|251836559|gb|EES65094.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] Length = 159 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 46/159 (28%), Positives = 80/159 (50%), Gaps = 10/159 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQ 74 + + I +++ PV+ EM V I L++ ++I+VE +G++TL DC +S Sbjct: 4 YNKENILKKIETIVTPVVNEMKLSLVDIEYLQDGGYWYVRIYVENLEGDITLEDCATISN 63 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 + D++ +IE + LEVSSPGI+RP+ + D++R+ G + D + G Sbjct: 64 KVDE--DIDKLIEQRFFLEVSSPGIERPLKKIDDYIRFKGEKAKLSLKHKVNDNKNFEGI 121 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 I+ ++ +LE E NE I I F + A L+ Sbjct: 122 IIDCRDSIIYLEVE-------NEKIIEIPFSEVRKANLV 153 >gi|149185834|ref|ZP_01864149.1| hypothetical protein ED21_23911 [Erythrobacter sp. SD-21] gi|148830395|gb|EDL48831.1| hypothetical protein ED21_23911 [Erythrobacter sp. SD-21] Length = 185 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 50/182 (27%), Positives = 87/182 (47%), Gaps = 19/182 (10%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLL----EEKNLLLQIFVERD-DGNMTLRDCEELS 73 M ++ VI+P + + F V++ ++ + + LQI E G + + C LS Sbjct: 1 MADLERLTEVIEPEAQALGFELVRVKMVPSEAGDGGMALQIMAEDPATGQLVIEQCAALS 60 Query: 74 QAISPILDV-----ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 + +S +LD E ++ G Y LEVSSPGIDRP+ R DF W GH + Sbjct: 61 RRVSDMLDQLEEQGEVLVPGAYHLEVSSPGIDRPLTRAKDFENWAGHEAKIALTEKVHGY 120 Query: 129 QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS--LNNY 186 + + G++ G ++ E ++ + + SA+L++TDEL+ A+ L+ Sbjct: 121 RTVKGELKGIDGDMVTVDIPGAKE-------VSFPRNLIHSAKLVLTDELIAATQPLDTS 173 Query: 187 GS 188 G+ Sbjct: 174 GA 175 >gi|229824125|ref|ZP_04450194.1| hypothetical protein GCWU000282_01429 [Catonella morbi ATCC 51271] gi|229786479|gb|EEP22593.1| hypothetical protein GCWU000282_01429 [Catonella morbi ATCC 51271] Length = 157 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 66/158 (41%), Gaps = 8/158 (5%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + ++ I ++E V + ++E K+ L+I+ ++ G + + DC +S+ IS Sbjct: 3 AILDKVTPAITEIVEANGCYLVDMEYVKEGKSWFLRIYADKP-GRIDIDDCAAISEQISE 61 Query: 79 ILDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 LD + Y LEVSSPG +RP+ G V + + G + Sbjct: 62 HLDSIKPDPFPEAYFLEVSSPGAERPLKTDQALREAIGEYVHLDYYAPQHGAKSHEGTLE 121 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ L + + K Q+ I ++ ARL + Sbjct: 122 AVTDDKVALTVQIKTVKK----QLEIERQAIAKARLAI 155 >gi|119898400|ref|YP_933613.1| hypothetical protein azo2109 [Azoarcus sp. BH72] gi|259585699|sp|A1K7C1|RIMP_AZOSB RecName: Full=Ribosome maturation factor rimP gi|119670813|emb|CAL94726.1| conserved hypothetical protein [Azoarcus sp. BH72] Length = 144 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 83/153 (54%), Gaps = 12/153 (7%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + ++++ V+ + + V L K LL++F++ + G +T+ DC +S ++ + Sbjct: 1 MQAGVENLVEQVVSGLGYELVDFELSP-KGRLLRVFIDIERG-VTVDDCATVSNQLTRVF 58 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 +VEN+ + RLEVSSPG+DRP+ + +DF R+ G + + L G+++ +G + G E Sbjct: 59 EVENV--DYDRLEVSSPGLDRPLKKLADFERFAGQEIQLRLSLPIGNQRNFVGVLQGVRE 116 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + L EK ++ F+ + ARL+ Sbjct: 117 SSVVLLTEKG--------ELLAPFEEIEKARLV 141 >gi|168180699|ref|ZP_02615363.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916] gi|182668569|gb|EDT80548.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916] Length = 153 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 40/154 (25%), Positives = 79/154 (51%), Gaps = 10/154 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 L ++ I+P+ E + + I ++E K L+I+++ ++G ++L CE++S+AIS Sbjct: 5 SLIENLKEQIEPIAEGLDYELYHIEFVKEGKENYLRIYIDSENG-VSLEGCEKVSRAISE 63 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LD + I+ Y LEVSSPGIDR + ++ G+ + + K+K G+++ Sbjct: 64 LLDDIDPIQESYYLEVSSPGIDRVLYTDKHLEKYKGYNIVLNLYSPIDKKKKYEGELVDF 123 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +E ++ E+ + I + + A L Sbjct: 124 NENEIDIKVEENI--------VTIPREKISKATL 149 >gi|302039406|ref|YP_003799728.1| hypothetical protein NIDE4135 [Candidatus Nitrospira defluvii] gi|300607470|emb|CBK43803.1| conserved protein of unknown function DUF150 [Candidatus Nitrospira defluvii] Length = 159 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 78/153 (50%), Gaps = 6/153 (3%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQ-ISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 L I + P+++ V+ + + + ++++F+++ G +TL DCE+ +++SP Sbjct: 6 ALNLRIQEIAAPILQSHGLELVEAVCVGQGPRTVIRVFIDKP-GGITLTDCEQAHRSLSP 64 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LDV + Y LE+SSPG+DRP+ D+ R G V ++ + +L+G ++ Sbjct: 65 ALDVIDPFPHAYTLEISSPGLDRPLRSVQDYRRLIGKPVTLKLREPIQAQWRLVGAVVEV 124 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 + G L +++ + I + FD + AR Sbjct: 125 DDRGVTLGIQQKKTTE----TIRVEFDQIALAR 153 >gi|162454077|ref|YP_001616444.1| hypothetical protein sce5801 [Sorangium cellulosum 'So ce 56'] gi|259586198|sp|A9G896|RIMP_SORC5 RecName: Full=Ribosome maturation factor rimP gi|161164659|emb|CAN95964.1| hypothetical protein sce5801 [Sorangium cellulosum 'So ce 56'] Length = 208 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 82/158 (51%), Gaps = 15/158 (9%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDD-----GNMTLRDCEELSQAI 76 G + + PV+ V + + E+ L++ +ER++ G +TL DC ++S+ + Sbjct: 12 GRVRDAVAPVLASHGVTLVDLEWITERAGWTLRLTIERENADDAGGGVTLEDCADVSRDV 71 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS-GDKQKLIGKI 135 S +LDVE++I HY LEVSSPG+DR + ++F R+ G ++ + ++ L G++ Sbjct: 72 SSVLDVEDLIPNHYNLEVSSPGLDRRLRTAAEFARFLGRTAKVKLARPAPDGQRLLRGEL 131 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E + + + +IA+ F + ARL+ Sbjct: 132 LEAPEGQVAVLVDGK--------RIAVPFADVAEARLV 161 >gi|225848028|ref|YP_002728191.1| hypothetical protein SULAZ_0194 [Sulfurihydrogenibium azorense Az-Fu1] gi|259645121|sp|C1DXS9|RIMP_SULAA RecName: Full=Ribosome maturation factor rimP gi|225644280|gb|ACN99330.1| conserved hypothetical protein [Sulfurihydrogenibium azorense Az-Fu1] Length = 147 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 42/154 (27%), Positives = 76/154 (49%), Gaps = 9/154 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 M L + ++ P++E+ + V I + K +L+I++ +G ++ DCE +SQ I Sbjct: 1 MKLEEKVKELLSPILEDRGLKLVDIEYITGKRPVLRIYIYNPEGT-SIDDCEYVSQRIGS 59 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 ILDVE++I+ Y LEVSSPG+DR ++ + G V + DK+ G + G Sbjct: 60 ILDVEDLIKTSYTLEVSSPGLDRKFKNIEEYNIFKGKDVVVKTKEPIEDKKIFKGILEGL 119 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + L+++ + + I D + +L Sbjct: 120 EDGIVKLKQDN--------IVVEIPLDKISQTKL 145 >gi|157964684|ref|YP_001499508.1| hypothetical protein RMA_0855 [Rickettsia massiliae MTU5] gi|157844460|gb|ABV84961.1| hypothetical protein RMA_0855 [Rickettsia massiliae MTU5] Length = 164 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 90/166 (54%), Gaps = 9/166 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-MTLRDCEELSQAISPI 79 + I++VI+ + +M F V + + +++I ++ +G +++ DC + S+ IS I Sbjct: 7 IEQQITNVIEESLTDMGFELVLVKVKGVNPKVVEILIDSLNGERISVEDCTKASRTISAI 66 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE++IE Y LEV+S G++RP+V+ ++ R+ V ++ K + GKI+ Sbjct: 67 LDVEDLIEAAYSLEVASSGLERPLVKFENYNRFLEREVKIKLKELLNGKTRYQGKIIKAE 126 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 +L+ E E ++ I +D + +A L++T+E+ + L Sbjct: 127 NNKIYLKCE--------EQEVLIDYDLIKNANLVLTEEVFKKLLKQ 164 >gi|15605802|ref|NP_213179.1| hypothetical protein aq_260 [Aquifex aeolicus VF5] gi|6647906|sp|O66619|RIMP_AQUAE RecName: Full=Ribosome maturation factor rimP gi|2982974|gb|AAC06588.1| hypothetical protein aq_260 [Aquifex aeolicus VF5] Length = 158 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 83/153 (54%), Gaps = 8/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + +++PVI M F+ + E + +L+I +++ G +T++DCEE+S+ +S + Sbjct: 8 IEKKVKEIVEPVIRGMGFKLFDVEFKPEGRGWVLRIIADKE-GGITIKDCEEISRKVSAL 66 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+II Y LE++SPG+ RP+ + + + G +V + K++++G I Sbjct: 67 LDVEDIIPFSYLLEITSPGLTRPLTKVEHYDFFKGRLVKLILKEPIEGKREVVGYIEDVK 126 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + ++++G+ + I F ++ RL Sbjct: 127 NGIIDIREKEKGKV------LHIPFSAIAKGRL 153 >gi|254516619|ref|ZP_05128678.1| conserved hypothetical protein [gamma proteobacterium NOR5-3] gi|219675042|gb|EED31409.1| conserved hypothetical protein [gamma proteobacterium NOR5-3] Length = 151 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 73/154 (47%), Gaps = 10/154 (6%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + +++ P +E + F L + K+ +L++++E ++G + + DC +S+ + +L Sbjct: 5 ENKLQTLLAPTVEALGFELWGTEYLIQGKHSVLRLYIESENG-VQVSDCAAVSEQVGAVL 63 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE I G Y LEVSSPG+DR + R + + G + + ++K G + G + Sbjct: 64 DVEEPISGEYLLEVSSPGVDRRLFRLEQYAAYVGEELELRLRSPFEGRRKFKGILRGVED 123 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L + + + + + A+L + Sbjct: 124 GDVVLLVDDH--------EYLLPYGDVDRAQLTL 149 >gi|182417563|ref|ZP_02948888.1| conserved hypothetical protein [Clostridium butyricum 5521] gi|237668728|ref|ZP_04528712.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378576|gb|EDT76104.1| conserved hypothetical protein [Clostridium butyricum 5521] gi|237657076|gb|EEP54632.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 153 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 48/153 (31%), Positives = 81/153 (52%), Gaps = 10/153 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L I ++++P+ EE+S++ + ++E L+I++++++G ++L DCE +S+ +S I Sbjct: 6 LVEKIENIVRPITEELSYKLYYVEYIKENGDFYLRIYIDKEEGRISLNDCEAVSRRVSEI 65 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ IEG Y LEVSSPG++R + KS F V + + + G + Sbjct: 66 LDVEDPIEGAYYLEVSSPGLNRSLHTKSHFESVLDKEVMVRFNGTIEGVKNIKGILKEVG 125 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 E +E EK I I D + SA L Sbjct: 126 EDYIIVEGEK---------TIKIPNDKIKSANL 149 >gi|56478753|ref|YP_160342.1| hypothetical protein ebA5838 [Aromatoleum aromaticum EbN1] gi|81356614|sp|Q5NZS3|RIMP_AZOSE RecName: Full=Ribosome maturation factor rimP gi|56314796|emb|CAI09441.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1] Length = 142 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 45/150 (30%), Positives = 81/150 (54%), Gaps = 12/150 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 D+ +++ V+ + F V K L+++F++ + G +T+ DC +S ++ + +VE Sbjct: 2 DVEGLVEQVVSGLGFELVDFE-TSPKGRLMRVFIDIERG-VTVDDCATVSNQLTRVFEVE 59 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 N+ + RLEVSSPG+DRP+ + +DF R+ G V + + G+++ IG + G SE Sbjct: 60 NV--DYDRLEVSSPGLDRPLKKTADFERFAGDEVQVRLRMPIGNQRNFIGVLEGLSEGVV 117 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L +K +A FD + ARL+ Sbjct: 118 RLHTDKG--------DVAFPFDEIEKARLV 139 >gi|224476388|ref|YP_002633994.1| hypothetical protein Sca_0900 [Staphylococcus carnosus subsp. carnosus TM300] gi|254807265|sp|B9DPF1|RIMP_STACT RecName: Full=Ribosome maturation factor rimP gi|222420995|emb|CAL27809.1| conserved hypothetical protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 155 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 78/155 (50%), Gaps = 6/155 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I +IQPV+++++F V+I +E K+ L+I ++++ G + L DC S+ IS + Sbjct: 4 ITEQIEEIIQPVLDDLNFELVEIEFTKEGKDHFLRISIDKE-GGVDLNDCTLASEKISEV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 ++ E+ IE Y L+V+SPG +RP+ V + ++ +G + + Sbjct: 63 MNEEDPIEQMYYLDVASPGAERPIKTDKALHDAVEQPVFVSLYAPIDGSKEWLGVLQSVT 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + ++ + + +K ++ I + + AR V Sbjct: 123 DDHIVIKAQVKEKKK----EVEIPRNKIAKARHAV 153 >gi|312143667|ref|YP_003995113.1| protein of unknown function DUF150 [Halanaerobium sp. 'sapolanicus'] gi|311904318|gb|ADQ14759.1| protein of unknown function DUF150 [Halanaerobium sp. 'sapolanicus'] Length = 156 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 81/142 (57%), Gaps = 1/142 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 +A ++ + P+ + V + L+E + +L++F+E +G +T+ +CE +S+A+S I Sbjct: 7 VADLVTEFVLPIAHNENLNLVDVEFLKEGSDWILRVFLENKEGELTIEECERVSRALSVI 66 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD E+ I+ Y LEVSSPG++RP+ + DF R+ G +++ + +++ IG + + Sbjct: 67 LDEEDPIDKSYILEVSSPGLERPLKTEEDFERFQGELISVKTFKKIDGQKEFIGILKAYN 126 Query: 140 ETGFFLEKEKRGEKDMNELQIA 161 ++ E D+++ IA Sbjct: 127 NGQIKIDLRNGKEIDLDDNIIA 148 >gi|222055778|ref|YP_002538140.1| protein of unknown function DUF150 [Geobacter sp. FRC-32] gi|254801441|sp|B9M1F7|RIMP_GEOSF RecName: Full=Ribosome maturation factor rimP gi|221565067|gb|ACM21039.1| protein of unknown function DUF150 [Geobacter sp. FRC-32] Length = 159 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 45/163 (27%), Positives = 85/163 (52%), Gaps = 14/163 (8%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ + + V+ + V++ E L+L++F++++ G +TL DCE +S+ Sbjct: 1 MAKVDVVSRVTELAEQVLSSLGMELVELEYKHEGRELVLRLFIDKE-GGVTLDDCESVSR 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD-----KQ 129 +S IL+VE+II GHYR EVSSPG+DRP+ + SD+ ++ G +V + D ++ Sbjct: 60 DLSQILEVEDIITGHYRFEVSSPGLDRPLKKGSDYEKYAGRLVKIRTFEALADDAGNKRK 119 Query: 130 KLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +G++ G E + ++ I D + A L Sbjct: 120 TFLGELKGLKEGQVHIALKE-------GQSAVIPLDKIAKANL 155 >gi|313893703|ref|ZP_07827270.1| conserved hypothetical protein [Veillonella sp. oral taxon 158 str. F0412] gi|313441717|gb|EFR60142.1| conserved hypothetical protein [Veillonella sp. oral taxon 158 str. F0412] Length = 152 Score = 154 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 77/148 (52%), Gaps = 3/148 (2%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + +SSV++ +I V + + E++ L++++++ G + L DC+ +S+ +S + Sbjct: 5 AVEEFVSSVVEGIIAGTDMELVDVDYVRERDWYLRVYLDKP-GGVDLDDCQLVSEKLSAV 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD ++ I +Y LEVSSPG+DR + + D +R+NG V ++ ++ G + G + Sbjct: 64 LDEKDPITENYLLEVSSPGLDRVLKKDKDLIRYNGRDVDIQLFKPVNGSKQFTGALQGFT 123 Query: 140 ETGF--FLEKEKRGEKDMNELQIAISFD 165 +T + E + QI + D Sbjct: 124 DTTIDFTINGESMTFERSAIAQIRLHLD 151 >gi|154497679|ref|ZP_02036057.1| hypothetical protein BACCAP_01655 [Bacteroides capillosus ATCC 29799] gi|150273177|gb|EDN00322.1| hypothetical protein BACCAP_01655 [Bacteroides capillosus ATCC 29799] Length = 151 Score = 154 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 64/155 (41%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + ++ QP+ E + + E L+++++++ G + + DCE +S+ +S Sbjct: 4 VTELVRALAQPIAAENGCSIWDVEYVREAGTWFLRVYLDKE-GGVNIDDCEAVSRPLSDA 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + IEG Y LEVSS GIDR + F + G V + ++ +G + Sbjct: 63 LDEADPIEGSYTLEVSSAGIDRVLRHPEHFDAFLGAEVEVRLYRPVEGRKDHVGLLKAYD 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + + RL V Sbjct: 123 NGDVTV--------TLPSGDVTFPKKDVAQVRLYV 149 >gi|290969146|ref|ZP_06560671.1| conserved hypothetical protein [Megasphaera genomosp. type_1 str. 28L] gi|290780652|gb|EFD93255.1| conserved hypothetical protein [Megasphaera genomosp. type_1 str. 28L] Length = 153 Score = 154 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 66/116 (56%), Gaps = 1/116 (0%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ + ++ S V + + EK+ L++F++++ G + L DC+++S+ +S +LD E+ Sbjct: 13 VTEKAEQLLASTSLELVDVEYVREKDWYLRVFIDKE-GGVDLEDCQQVSEKLSKVLDRED 71 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 I +Y LEVSSPG+DR + + DFLR+ G V K+ +G+++ Sbjct: 72 PIRDNYLLEVSSPGLDRILKKDKDFLRYAGRTVDIHFFAPREGKKDWVGELVKKDG 127 >gi|94263058|ref|ZP_01286877.1| Protein of unknown function DUF150 [delta proteobacterium MLMS-1] gi|94272102|ref|ZP_01292068.1| Protein of unknown function DUF150 [delta proteobacterium MLMS-1] gi|93450238|gb|EAT01519.1| Protein of unknown function DUF150 [delta proteobacterium MLMS-1] gi|93456601|gb|EAT06709.1| Protein of unknown function DUF150 [delta proteobacterium MLMS-1] Length = 155 Score = 154 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 45/158 (28%), Positives = 80/158 (50%), Gaps = 10/158 (6%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAI 76 D L+ ++ ++QPV+E+ + E +L++ ++ DDG +TL DC +S+ + Sbjct: 5 DKALSARLTELLQPVVEDHGLELADLQFRREPAGWVLRLVIDGDDG-VTLDDCTRISREV 63 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 S +L+VE+ IE + LEVSSPG+DRP+ R+ D+ R G + +IG+I Sbjct: 64 SHLLEVEDPIEQAFNLEVSSPGLDRPLKREQDYRRCRGRKAKLVCREPIAGEPVVIGEIG 123 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + E +A+ + ARL++ Sbjct: 124 EMAEQVVTIITE--------AGPVAVPLAQVKRARLVI 153 >gi|227534930|ref|ZP_03964979.1| protein of hypothetical function DUF150 [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187686|gb|EEI67753.1| protein of hypothetical function DUF150 [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 150 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 74/153 (48%), Gaps = 8/153 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 ++++++P++++ F + ++E L++++++ G +TL +C +S+A+S LD Sbjct: 1 MTALVKPILDDHHFYLTDVEFVKEGGGWYLRVYIDK-TGGITLDECVMVSEALSEKLDAM 59 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + I Y LEVSSPG +RP+ ++D+ + G + + K+ G + Sbjct: 60 DPDPIPQQYFLEVSSPGAERPLKHETDYEQAVGDYIHVSLFKKLDGKKVFEGTLKELLPD 119 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L + + K I + SARL + Sbjct: 120 QLTLTVKDKSRKFDQ----VIDRQLIASARLAI 148 >gi|254283179|ref|ZP_04958147.1| conserved hypothetical protein [gamma proteobacterium NOR51-B] gi|219679382|gb|EED35731.1| conserved hypothetical protein [gamma proteobacterium NOR51-B] Length = 168 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 77/154 (50%), Gaps = 10/154 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 G +S ++ P IE + F + LL + +++++R++G +T+ DC +S+ IS Sbjct: 3 GKTTQLSELLTPTIESLGFELWGLELLPPFRKPTFRVYIDREEG-VTVDDCAMVSRHISG 61 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LDVE+ I+ + LEVSSPGIDR + R + + G + + + ++K G ++G Sbjct: 62 VLDVEDPIQTEFTLEVSSPGIDRLLFRPEQYRLYIGEPIEVRLRMPFEGRRKFRGWLVGV 121 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + E + + +S+ A++ Sbjct: 122 --------EGDEVVVRAGEHEYVLPLNSVERAKV 147 >gi|254252538|ref|ZP_04945856.1| hypothetical protein BDAG_01771 [Burkholderia dolosa AUO158] gi|124895147|gb|EAY69027.1| hypothetical protein BDAG_01771 [Burkholderia dolosa AUO158] Length = 152 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 39/150 (26%), Positives = 75/150 (50%), Gaps = 8/150 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I+ + + + V + +L I++++ G ++L DCE++++ + +L VE Sbjct: 2 QLTELIETTVTGLGYELVDLE--RTGRGMLCIYIDQPAG-ISLDDCEKVTRQLQHVLTVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DRP+ + +DF R+ G V+ + ++ G + + Sbjct: 59 NI--DYERLEVSSPGLDRPLKKLADFERFAGSEVSVTLKKPLDGRKTYRGILHAPNGETI 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLI 173 LE E K + + + ARLI Sbjct: 117 GLEFE---RKKGEAAMLDFTLADIDKARLI 143 >gi|225023297|ref|ZP_03712489.1| hypothetical protein EIKCOROL_00150 [Eikenella corrodens ATCC 23834] gi|224943942|gb|EEG25151.1| hypothetical protein EIKCOROL_00150 [Eikenella corrodens ATCC 23834] Length = 141 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 77/149 (51%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI +V++ + + + V L + + L++F+++ +G +T+ DC +S +S + VE Sbjct: 2 DIQAVLEKTLPGLGYELVDFELTAQGD--LRVFIDKPEG-ITVEDCATVSNHLSRLFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 ++ + RLE+SSPG+DRP+ + +DF+R++G +V + L ++ IG I Sbjct: 59 DV--DYKRLEISSPGLDRPLKKAADFIRFSGSLVKLKTRLPVEGQKNFIGHIENFENDVL 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + AI ++ A L Sbjct: 117 TIAFDGK--------TAAIELSNIDRAHL 137 >gi|310778371|ref|YP_003966704.1| protein of unknown function DUF150 [Ilyobacter polytropus DSM 2926] gi|309747694|gb|ADO82356.1| protein of unknown function DUF150 [Ilyobacter polytropus DSM 2926] Length = 158 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 11/155 (7%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISP 78 + I + PV E V I L++ +++++E+ D +TL DC +S I Sbjct: 8 AIVEKIWDLTTPVASEFGLDIVDIEYLQDGGYWYVRVYIEKPDAEITLVDCANVSNRIEE 67 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 DV+ +I+ + LEVSSPGI+RP+ + DF+R+ G + D + G+I Sbjct: 68 --DVDALIDKKFFLEVSSPGIERPLKSEKDFIRFVGEKARLILKHKLEDSRNWTGEISSF 125 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 +L + + + I F + A L+ Sbjct: 126 ENGIIYLSTDGKK--------LEIPFSEVKKANLV 152 >gi|218665765|ref|YP_002424885.1| lipoprotein, putative [Acidithiobacillus ferrooxidans ATCC 23270] gi|259585659|sp|B7J4D2|RIMP_ACIF2 RecName: Full=Ribosome maturation factor rimP gi|218517978|gb|ACK78564.1| lipoprotein, putative [Acidithiobacillus ferrooxidans ATCC 23270] Length = 150 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 43/139 (30%), Positives = 71/139 (51%), Gaps = 10/139 (7%) Query: 37 SFRSVQISLLEEKNLL-LQIFVERDDGN-MTLRDCEELSQAISPILDVENIIEGHYRLEV 94 V ++ + LQ+F+E+D+ +T+ DC +S+ +S LDVEN I G YRLEV Sbjct: 17 GCTLVDARMVRTGRAVALQVFIEKDETTAVTIEDCAAVSRQLSLWLDVENPIHGAYRLEV 76 Query: 95 SSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKD 154 SSPG+DRP+ DF R+ G + + +++L G+++G + L Sbjct: 77 SSPGLDRPLKNLHDFERFKGSQAEIHLHGLTQGRRRLQGELLGVEDQKIVL--------K 128 Query: 155 MNELQIAISFDSLLSARLI 173 E + + D + ARL+ Sbjct: 129 NAEGRWTFALDDIHKARLV 147 >gi|198282693|ref|YP_002219014.1| hypothetical protein Lferr_0553 [Acidithiobacillus ferrooxidans ATCC 53993] gi|259585660|sp|B5EMC8|RIMP_ACIF5 RecName: Full=Ribosome maturation factor rimP gi|198247214|gb|ACH82807.1| protein of unknown function DUF150 [Acidithiobacillus ferrooxidans ATCC 53993] Length = 153 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 43/139 (30%), Positives = 71/139 (51%), Gaps = 10/139 (7%) Query: 37 SFRSVQISLLEEKNLL-LQIFVERDDGN-MTLRDCEELSQAISPILDVENIIEGHYRLEV 94 V ++ + LQ+F+E+D+ +T+ DC +S+ +S LDVEN I G YRLEV Sbjct: 20 GCTLVDARMVRTGRAVALQVFIEKDETTAVTIEDCAAVSRQLSLWLDVENPIHGAYRLEV 79 Query: 95 SSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKD 154 SSPG+DRP+ DF R+ G + + +++L G+++G + L Sbjct: 80 SSPGLDRPLKNLHDFERFKGSQAEIHLHGLTQGRRRLQGELLGVEDQKIVL--------K 131 Query: 155 MNELQIAISFDSLLSARLI 173 E + + D + ARL+ Sbjct: 132 NAEGRWTFALDDIHKARLV 150 >gi|78066109|ref|YP_368878.1| hypothetical protein Bcep18194_A4639 [Burkholderia sp. 383] gi|91208362|sp|Q39H32|RIMP_BURS3 RecName: Full=Ribosome maturation factor rimP gi|77966854|gb|ABB08234.1| protein of unknown function DUF150 [Burkholderia sp. 383] Length = 152 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 39/150 (26%), Positives = 75/150 (50%), Gaps = 8/150 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I+ + + + V + +L I++++ G ++L DCE++++ + +L VE Sbjct: 2 QLTELIETTVTGLGYELVDLE--RTGRGMLCIYIDQPAG-ISLEDCEKVTRQLQHVLTVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DRP+ + +DF R+ G V+ + ++ G + + Sbjct: 59 NI--DYERLEVSSPGLDRPLKKLADFERFAGSEVSVTLKKPLDGRKTYRGILHAPNGETI 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLI 173 LE E K + + + ARLI Sbjct: 117 GLEFEG---KKGEAAMLDFTLADIDKARLI 143 >gi|282848826|ref|ZP_06258219.1| conserved hypothetical protein [Veillonella parvula ATCC 17745] gi|294791738|ref|ZP_06756886.1| conserved hypothetical protein [Veillonella sp. 6_1_27] gi|294793599|ref|ZP_06758736.1| conserved hypothetical protein [Veillonella sp. 3_1_44] gi|282581480|gb|EFB86870.1| conserved hypothetical protein [Veillonella parvula ATCC 17745] gi|294455169|gb|EFG23541.1| conserved hypothetical protein [Veillonella sp. 3_1_44] gi|294456968|gb|EFG25330.1| conserved hypothetical protein [Veillonella sp. 6_1_27] Length = 152 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 77/148 (52%), Gaps = 3/148 (2%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + +SSV++ +I V + + E++ L++++++ G + L DC+ +S+ +S + Sbjct: 5 AVEEFVSSVVEGIIAGTDMELVDVDYVRERDWYLRVYLDKP-GGVDLDDCQLVSEKLSAV 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD ++ I +Y LEVSSPG+DR + + D +R+NG V ++ ++ G + G + Sbjct: 64 LDEKDPITENYLLEVSSPGLDRVLKKDKDLVRYNGRDVDIQLFKPVNGSKQFTGALQGFT 123 Query: 140 ETGF--FLEKEKRGEKDMNELQIAISFD 165 +T + E + QI + D Sbjct: 124 DTSIDFTINGESITFERSAIAQIRLHLD 151 >gi|134295572|ref|YP_001119307.1| hypothetical protein Bcep1808_1464 [Burkholderia vietnamiensis G4] gi|166979856|sp|A4JDW9|RIMP_BURVG RecName: Full=Ribosome maturation factor rimP gi|134138729|gb|ABO54472.1| protein of unknown function DUF150 [Burkholderia vietnamiensis G4] Length = 152 Score = 154 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 38/150 (25%), Positives = 75/150 (50%), Gaps = 8/150 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I+ + + + V + +L I++++ G ++L DCE++++ + +L VE Sbjct: 2 QLTELIETTVTGLGYELVDLE--RTGRGMLCIYIDQPAG-ISLDDCEKVTRQLQHVLTVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DRP+ + +DF R+ G V+ + ++ G + + Sbjct: 59 NI--DYERLEVSSPGLDRPLKKLADFERFAGSEVSVTLKKPLDGRKTYRGILHAPNGETI 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLI 173 LE E+ + + + ARLI Sbjct: 117 GLEFERNK---GEAAMLDFTLADIDKARLI 143 >gi|253997781|ref|YP_003049844.1| hypothetical protein Msip34_0068 [Methylovorus sp. SIP3-4] gi|313199845|ref|YP_004038503.1| hypothetical protein MPQ_0074 [Methylovorus sp. MP688] gi|253984460|gb|ACT49317.1| protein of unknown function DUF150 [Methylovorus sp. SIP3-4] gi|312439161|gb|ADQ83267.1| conserved hypothetical protein [Methylovorus sp. MP688] Length = 145 Score = 154 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 81/151 (53%), Gaps = 11/151 (7%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 D+ S+++ + ++ + V + + + L+++F+++ +G + + DC +S + +L V Sbjct: 2 QDLYSLLEKSVSQLGYELVDVE-ISNRGKLIRLFIDKPEG-INIDDCVLVSNQLGNVLAV 59 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 EN I + RLEVSSPG+DR + + +DF+R+ G ++ + +++ IG + G + Sbjct: 60 ENDI-DYDRLEVSSPGLDRVLKKDADFIRFTGERAQVKLRIPVDNRKNFIGILQGIEQDN 118 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 +E+E + ++ ++ ARL Sbjct: 119 LLIEQEG--------VLHRLALSNIDKARLA 141 >gi|259586220|sp|A8F225|RIMP_RICM5 RecName: Full=Ribosome maturation factor rimP Length = 161 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 90/166 (54%), Gaps = 9/166 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-MTLRDCEELSQAISPI 79 + I++VI+ + +M F V + + +++I ++ +G +++ DC + S+ IS I Sbjct: 4 IEQQITNVIEESLTDMGFELVLVKVKGVNPKVVEILIDSLNGERISVEDCTKASRTISAI 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE++IE Y LEV+S G++RP+V+ ++ R+ V ++ K + GKI+ Sbjct: 64 LDVEDLIEAAYSLEVASSGLERPLVKFENYNRFLEREVKIKLKELLNGKTRYQGKIIKAE 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 +L+ E E ++ I +D + +A L++T+E+ + L Sbjct: 124 NNKIYLKCE--------EQEVLIDYDLIKNANLVLTEEVFKKLLKQ 161 >gi|326388031|ref|ZP_08209635.1| hypothetical protein Y88_0399 [Novosphingobium nitrogenifigens DSM 19370] gi|326207532|gb|EGD58345.1| hypothetical protein Y88_0399 [Novosphingobium nitrogenifigens DSM 19370] Length = 197 Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats. Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 17/175 (9%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISL-----LEEKNLLLQIFVERDD-GNMTLRDCEEL 72 M I V++P + + F V+++L + ++ LQ+ ER + G + + DC EL Sbjct: 12 MADIARIIEVVEPEAKALGFDLVRVALFGKTEVGDEEHTLQVMAERPETGQLLIEDCAEL 71 Query: 73 SQAISPILDV-----ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD 127 S+ IS +D E++IE YRLEVSSPGIDRP+ R DF W GH E+ Sbjct: 72 SRRISDRMDQLEEAGEDLIEDAYRLEVSSPGIDRPLTRPKDFAGWVGHEARIELKDLIDR 131 Query: 128 KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS 182 +++ G+++G + E+ + + A+ FD + A+L++TD+L+ AS Sbjct: 132 RKRYRGELVGFDPATNTISIEE------DAVVYAVPFDLVAHAKLVLTDKLIAAS 180 >gi|325526250|gb|EGD03869.1| ribosome maturation protein RimP [Burkholderia sp. TJI49] Length = 152 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 38/150 (25%), Positives = 75/150 (50%), Gaps = 8/150 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I+ + + + V + +L +++++ G ++L DCE++++ + +L VE Sbjct: 2 QLTELIETTVTGLGYELVDLE--RTGRGMLCVYIDQPAG-ISLEDCEKVTRQLQHVLTVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DRP+ + +DF R+ G V+ + ++ G + + Sbjct: 59 NI--DYERLEVSSPGLDRPLKKLADFERFAGSEVSVTLKKPLDGRKTYRGILHAPNGETI 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLI 173 LE E K + + + ARLI Sbjct: 117 GLEFE---RKKGEAAMLDFTLADIDKARLI 143 >gi|206559871|ref|YP_002230635.1| hypothetical protein BCAL1505 [Burkholderia cenocepacia J2315] gi|226734182|sp|B4E7K9|RIMP_BURCJ RecName: Full=Ribosome maturation factor rimP gi|198035912|emb|CAR51804.1| conserved hypothetical protein [Burkholderia cenocepacia J2315] Length = 152 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 39/150 (26%), Positives = 76/150 (50%), Gaps = 8/150 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I+ + + + V++ +L I++++ G ++L DCE++++ + +L VE Sbjct: 2 QLTELIETTVTGLGYELVELE--RTGRGMLCIYIDQPAG-ISLDDCEKVTRQLQHVLTVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DRP+ + +DF R+ G V+ + ++ G + + Sbjct: 59 NI--DYERLEVSSPGLDRPLKKLADFERFAGSEVSVTLKKPLDGRKTYRGILHAPNGETI 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLI 173 LE E K + + + ARLI Sbjct: 117 GLEFEG---KKGEAAMLDFTLADIDKARLI 143 >gi|238019443|ref|ZP_04599869.1| hypothetical protein VEIDISOL_01312 [Veillonella dispar ATCC 17748] gi|237864142|gb|EEP65432.1| hypothetical protein VEIDISOL_01312 [Veillonella dispar ATCC 17748] Length = 170 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 78/156 (50%), Gaps = 3/156 (1%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 E + +SSV++ +I V + + E++ L++++++ G + L DC+ Sbjct: 15 EAMAMKREAVEEFVSSVVEGIIAGTEMELVDVDYVRERDWYLRVYLDKP-GGVDLDDCQL 73 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+ +S +LD ++ I +Y LEVSSPG+DR + + D +R+NG V ++ ++ Sbjct: 74 VSEKLSAVLDEKDPITENYLLEVSSPGLDRVLKKDKDLVRYNGRDVDIQLFKPINGSKQF 133 Query: 132 IGKIMGTSETGF--FLEKEKRGEKDMNELQIAISFD 165 G + G ++T + E + QI + D Sbjct: 134 TGVLEGFTDTTIDFTINGESMTFERSAIAQIRLHLD 169 >gi|87200506|ref|YP_497763.1| hypothetical protein Saro_2493 [Novosphingobium aromaticivorans DSM 12444] gi|123488750|sp|Q2G5E4|RIMP_NOVAD RecName: Full=Ribosome maturation factor rimP gi|87136187|gb|ABD26929.1| protein of unknown function DUF150 [Novosphingobium aromaticivorans DSM 12444] Length = 186 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 55/175 (31%), Positives = 84/175 (48%), Gaps = 17/175 (9%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-----LLLQIFVERDD-GNMTLRDCEEL 72 M I V++P + + F V++ + LQI ER D G + + DC L Sbjct: 1 MTDIARIIEVVEPEAKALGFDLVRVRYFKGGEIGDEEHTLQIMAERPDTGQLVIEDCAAL 60 Query: 73 SQAISPILDVEN-----IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD 127 S+ +S D +IE YRLEVSSPGIDRP+ R DF W GH E+ + Sbjct: 61 SRRVSDRFDELEEAGDVLIEDAYRLEVSSPGIDRPLTRAKDFAAWIGHEARVELSELLDN 120 Query: 128 KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS 182 +++ G++ G + E G + + FD + +A+LI+TD+L+ AS Sbjct: 121 RKRFRGELKGFDAETQAISIEDDG------VVFEVPFDLVSNAKLILTDKLIAAS 169 >gi|170759112|ref|YP_001787733.1| hypothetical protein CLK_1798 [Clostridium botulinum A3 str. Loch Maree] gi|226695970|sp|B1KWL1|RIMP_CLOBM RecName: Full=Ribosome maturation factor rimP gi|169406101|gb|ACA54512.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch Maree] Length = 153 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 79/154 (51%), Gaps = 10/154 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 L ++ I+P++E +++ I ++E K L+I+++ ++G +L CE++S+A+S Sbjct: 5 NLIENLKKQIEPIVEGLNYELYHIEFVKEGKENYLRIYIDSENGA-SLEGCEKVSRAVSE 63 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LD + I+ Y LEVSSPGIDR + ++ G+ + + K+K G+++ Sbjct: 64 LLDDIDPIQESYYLEVSSPGIDRVLYTDKHLEKYKGYNIILNLYSPIDKKKKYEGELIDF 123 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +E ++ E+ + I + + L Sbjct: 124 NENEINIKVEENI--------VTIPREKISKTTL 149 >gi|297569837|ref|YP_003691181.1| protein of unknown function DUF150 [Desulfurivibrio alkaliphilus AHT2] gi|296925752|gb|ADH86562.1| protein of unknown function DUF150 [Desulfurivibrio alkaliphilus AHT2] Length = 155 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 81/159 (50%), Gaps = 10/159 (6%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQA 75 G+ L + +++PV+ + ++ E +L++ ++ DDG + L DC +S+ Sbjct: 4 GESALIQRLHELLEPVVLDHGLELAELQFRREAPGWVLRLIIDADDG-VGLDDCTRVSRE 62 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +L+VE+ IE + LEVSSPG+DRP+ R+ D++R G + + +IG++ Sbjct: 63 VSHLLEVEDPIEQAFTLEVSSPGLDRPLRRERDYVRCRGKMAKIVCTRQIEGQNVVIGRL 122 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ +E + + + ++ ARL+V Sbjct: 123 GEVADGAVTVETD--------AGPVKVPLAAVRRARLVV 153 >gi|330816692|ref|YP_004360397.1| hypothetical protein bgla_1g17960 [Burkholderia gladioli BSR3] gi|327369085|gb|AEA60441.1| hypothetical protein bgla_1g17960 [Burkholderia gladioli BSR3] Length = 153 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 76/150 (50%), Gaps = 8/150 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I+ + + + V + +L +++++ G +++ DCE++++ + +L VE Sbjct: 2 QLTELIETTVTGLGYELVDLE--RTGRGMLCVYIDQPAG-ISIDDCEKVTRQLQHVLTVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DRP+ + +DF R+ G+ ++ + ++ G + + Sbjct: 59 NI--DYERLEVSSPGLDRPLKKLADFERFAGNEISVTLKKPLEGRKTYRGILHAPNGETI 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLI 173 LE E K + + + ARLI Sbjct: 117 GLEFE---RKKGEAAMLDFTLADIDKARLI 143 >gi|161524930|ref|YP_001579942.1| hypothetical protein Bmul_1757 [Burkholderia multivorans ATCC 17616] gi|189350320|ref|YP_001945948.1| hypothetical protein BMULJ_01483 [Burkholderia multivorans ATCC 17616] gi|221197755|ref|ZP_03570801.1| conserved hypothetical protein [Burkholderia multivorans CGD2M] gi|221204687|ref|ZP_03577704.1| conserved hypothetical protein [Burkholderia multivorans CGD2] gi|221214881|ref|ZP_03587849.1| conserved hypothetical protein [Burkholderia multivorans CGD1] gi|226734876|sp|A9ABD7|RIMP_BURM1 RecName: Full=Ribosome maturation factor rimP gi|160342359|gb|ABX15445.1| protein of unknown function DUF150 [Burkholderia multivorans ATCC 17616] gi|189334342|dbj|BAG43412.1| conserved hypothetical protein [Burkholderia multivorans ATCC 17616] gi|221165108|gb|EED97586.1| conserved hypothetical protein [Burkholderia multivorans CGD1] gi|221175544|gb|EEE07974.1| conserved hypothetical protein [Burkholderia multivorans CGD2] gi|221181687|gb|EEE14088.1| conserved hypothetical protein [Burkholderia multivorans CGD2M] Length = 152 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 38/150 (25%), Positives = 75/150 (50%), Gaps = 8/150 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I+ + + + V + +L +++++ G ++L DCE++++ + +L VE Sbjct: 2 QLTELIETTVTGLGYELVDLE--RTGRGMLCVYIDQPAG-ISLEDCEKVTRQLQHVLTVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DRP+ + +DF R+ G V+ + ++ G + + Sbjct: 59 NI--DYERLEVSSPGLDRPLKKLADFERFAGSEVSVTLKKPLDGRKTYRGILHAPNGETI 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLI 173 LE E K + + + ARLI Sbjct: 117 GLEFE---RKKGEAAMLDFTLADIDKARLI 143 >gi|170754643|ref|YP_001781965.1| hypothetical protein CLD_2218 [Clostridium botulinum B1 str. Okra] gi|226701221|sp|B1II53|RIMP_CLOBK RecName: Full=Ribosome maturation factor rimP gi|169119855|gb|ACA43691.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra] Length = 153 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 78/154 (50%), Gaps = 10/154 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 L ++ I+P+ E + + I ++E K L+I+++ ++G ++L CE++S+A+S Sbjct: 5 SLIENLKKQIEPIAEGLDYELYHIEFVKEGKENYLRIYIDSENG-VSLEGCEKVSRAVSE 63 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LD + I+ Y LEVSSPGIDR + ++ G+ + + K+K G+++ Sbjct: 64 LLDDIDPIQESYYLEVSSPGIDRVLYTDKHLQKYKGYNIVLNLYSPIDKKKKYEGELVDF 123 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +E ++ E+ + I + + L Sbjct: 124 NENEINIKVEENI--------VTIPREKISKTTL 149 >gi|269797843|ref|YP_003311743.1| hypothetical protein Vpar_0782 [Veillonella parvula DSM 2008] gi|269094472|gb|ACZ24463.1| protein of unknown function DUF150 [Veillonella parvula DSM 2008] Length = 152 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 78/148 (52%), Gaps = 3/148 (2%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + +SSV++ +I V + + E++ L++++++ G + L DC+ +S+ +S + Sbjct: 5 AVEEFVSSVVEGIIAGTDMELVDVDYVRERDWYLRVYLDKP-GGVDLDDCQLVSEKLSAV 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD ++ I +Y LEVSSPG+DR + + D +R+NG V ++ + ++ G + G + Sbjct: 64 LDEKDPITENYLLEVSSPGLDRVLKKDKDLVRYNGRDVDIQLFKAINGSKQFTGALQGFT 123 Query: 140 ETGF--FLEKEKRGEKDMNELQIAISFD 165 +T + E + QI + D Sbjct: 124 DTTIEFTINGESMTFERSTIAQIRLHLD 151 >gi|77359941|ref|YP_339516.1| hypothetical protein PSHAa0995 [Pseudoalteromonas haloplanktis TAC125] gi|76874852|emb|CAI86073.1| conserved protein of unknown function (yhbC) [Pseudoalteromonas haloplanktis TAC125] Length = 141 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 70/147 (47%), Gaps = 10/147 (6%) Query: 28 VIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 ++ P +E + F + ++ ++ L++++ + G +++ +C + S+ IS ILDVE+ I Sbjct: 1 MLTPAVEMLGFELHGLEFVQAGRHSTLRVYITHEAG-ISVDNCADASRQISAILDVEDPI 59 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE 146 Y LEVSSPG+DR + ++ + + G V L ++ G ++ + L Sbjct: 60 TNEYDLEVSSPGVDRLLFKQDHYEQAQGEEVQLRTKLPQDGRRNFKGDLIAVTSDMITLS 119 Query: 147 KEKRGEKDMNELQIAISFDSLLSARLI 173 + + I ++ A +I Sbjct: 120 SDG--------TEHLIMLSNIERANII 138 >gi|15836838|ref|NP_297526.1| hypothetical protein XF0233 [Xylella fastidiosa 9a5c] gi|9105044|gb|AAF83046.1|AE003877_1 conserved hypothetical protein [Xylella fastidiosa 9a5c] Length = 215 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 43/172 (25%), Positives = 83/172 (48%), Gaps = 13/172 (7%) Query: 24 DISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVE-----RDDGNMTLRDCEELSQAIS 77 +I +++ P +E + F + L +L+++++ + + +++ DCE +S+ +S Sbjct: 23 EIVNLLAPKVETLGFELLGAEYLLVPSGAILRLYIDTPFAMQPECMVSIDDCERVSREVS 82 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LDVE I G+Y LEVSSPG+DR + F R V + L ++L GKI+ Sbjct: 83 AYLDVEEPISGNYTLEVSSPGLDRRLFTLEQFARHYNQFVKVGLKLPQHGSRRLQGKIVR 142 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD-ELLRASLNNYGS 188 + + +N +++A+ F+++ AR++ L A L Sbjct: 143 VE------QVDGFVVLLVNGVELAVDFNNIDKARIVPDWSALGLAPLEKSKP 188 >gi|67923758|ref|ZP_00517222.1| Protein of unknown function DUF150 [Crocosphaera watsonii WH 8501] gi|67854385|gb|EAM49680.1| Protein of unknown function DUF150 [Crocosphaera watsonii WH 8501] Length = 151 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 1/147 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 L I + P+ +EM V + K +L++ + G+ +L DCE++S+A+ I Sbjct: 5 LIPQIIDLATPIAQEMGLEIVDVVFQTNKRPPVLRVDIRNTIGDTSLNDCEKVSRALESI 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD I+ G Y LE+SSPGI R + + DF+ + G V DK++ G++ G Sbjct: 65 LDERAIMPGAYVLEISSPGISRYLSSERDFIAFKGFEVKVTTNPPYMDKKEWQGRLQGRD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDS 166 E +L ++ R + + Sbjct: 125 EKAVYLNRKGRAIAVPCSVITQVQLAD 151 >gi|237757009|ref|ZP_04585464.1| conserved hypothetical protein [Sulfurihydrogenibium yellowstonense SS-5] gi|237690827|gb|EEP59980.1| conserved hypothetical protein [Sulfurihydrogenibium yellowstonense SS-5] Length = 147 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 40/154 (25%), Positives = 77/154 (50%), Gaps = 9/154 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 M + + ++ P++EE F+ V I + K +L+I++ +G ++ DCE +S+ I Sbjct: 1 MKVEEKVKELLLPILEERDFKLVDIEFIPSKRPILRIYIYNPEGT-SIDDCEWVSKRIGA 59 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LDVE++I+ Y LEVSSPG+DR ++ + G V + +K+ G ++G Sbjct: 60 LLDVEDLIDKAYILEVSSPGLDRKFKNIEEYDIFKGRDVVIKTKEPINEKKVFKGTLLGL 119 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + NE + I +++ +L Sbjct: 120 EDEKVKI--------KENEETVEIPLENVSQTKL 145 >gi|294085150|ref|YP_003551910.1| hypothetical protein SAR116_1583 [Candidatus Puniceispirillum marinum IMCC1322] gi|292664725|gb|ADE39826.1| hypothetical protein SAR116_1583 [Candidatus Puniceispirillum marinum IMCC1322] Length = 177 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 46/155 (29%), Positives = 84/155 (54%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE--KNLLLQIFVER-DDGNMTLRDCEELSQAIS 77 + +S +I+ +E++ F+ V++ + LQI E +D MT+ DC++LS+ I+ Sbjct: 13 VETKVSKIIEAAVEDLGFQLVRVLFMGGNSGRNQLQIMAEPVEDREMTVEDCKKLSRHIA 72 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I Y LEVSSPGIDRP+ + D+ R+ G + + + +++ G++ G Sbjct: 73 ALLDVEDPISSAYVLEVSSPGIDRPLTKIEDYERFEGELAKINLRMMRDGRRRFNGRLNG 132 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + E + + + A +FD + SAR+ Sbjct: 133 FDD-------EGKIVLETTFGRFAFAFDEIDSARI 160 >gi|116624261|ref|YP_826417.1| hypothetical protein Acid_5179 [Candidatus Solibacter usitatus Ellin6076] gi|116227423|gb|ABJ86132.1| protein of unknown function DUF150 [Candidatus Solibacter usitatus Ellin6076] Length = 174 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 72/154 (46%), Gaps = 9/154 (5%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISP 78 + + V Q V + V++ + + L++I +++ +G +T DC+ +S + Sbjct: 25 AVTSKVEEVAQRVAQSEGLELVEVEVKGGGSARLVRISIDKPEG-VTHADCQTVSDKVGE 83 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 IL+ E+ I GHY LEVSSPG++R +++ D+ R++G + ++ G + G Sbjct: 84 ILEAEDAIPGHYTLEVSSPGVERKLLKPQDYQRFHGQKAKITVREEVDGRRTWEGTLAGF 143 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ LE + FD + A L Sbjct: 144 ADGVISLEV-------APGEIRRLPFDQVKKANL 170 >gi|167587340|ref|ZP_02379728.1| hypothetical protein BuboB_18484 [Burkholderia ubonensis Bu] Length = 152 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 37/150 (24%), Positives = 74/150 (49%), Gaps = 8/150 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I+ + + + V + +L I++++ G ++L DCE++++ + +L VE Sbjct: 2 QLTELIETTVTGLGYELVDLE--RTGRGMLCIYIDQPAG-ISLDDCEKVTRQLQHVLTVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DRP+ + +DF R+ G + + ++ G + + Sbjct: 59 NI--DYERLEVSSPGLDRPLKKLADFERFAGSEASVTLKKPLDGRKTYRGILHAPNGETI 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLI 173 LE E+ + + + ARLI Sbjct: 117 GLEFERNK---GEAAMLDFTLADIDKARLI 143 >gi|238027586|ref|YP_002911817.1| hypothetical protein bglu_1g20040 [Burkholderia glumae BGR1] gi|237876780|gb|ACR29113.1| Hypothetical protein bglu_1g20040 [Burkholderia glumae BGR1] Length = 153 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 75/150 (50%), Gaps = 8/150 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I+ + + + V + +L +++++ G +++ DCE++++ + +L VE Sbjct: 2 QLTELIETTVTGLGYELVDLE--RTGRGMLCVYIDQPAG-ISIDDCEKVTRQLQHVLTVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DRP+ + +DF R+ G ++ + ++ G + + Sbjct: 59 NI--DYERLEVSSPGLDRPLKKLADFERFAGSEISVTLKKPLEGRKTYRGILHAPNGETI 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLI 173 LE E K + + + ARLI Sbjct: 117 GLEFE---MKKGEAAMLDFTLADIDKARLI 143 >gi|126657164|ref|ZP_01728330.1| hypothetical protein CY0110_24586 [Cyanothece sp. CCY0110] gi|126621435|gb|EAZ92146.1| hypothetical protein CY0110_24586 [Cyanothece sp. CCY0110] Length = 151 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 L I + P+++EM V++ K +L++ + D + +L DCE++S+A+ + Sbjct: 5 LIPQIIDLATPIVQEMGLDVVEVVFQTNKRPPVLRVDIRNPDSDTSLNDCEQVSRALEAV 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD I+ G Y LE+SSPGI R + + DF+ + G V DK++ G++ G Sbjct: 65 LDETAIMPGAYVLEISSPGISRYLSDERDFVAFKGFEVNVTTNPPYKDKKEWQGRLQGRD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + +L ++ R IAI + +L Sbjct: 125 DKAVYLNRKGRA--------IAIPCSVITQVQLA 150 >gi|237746614|ref|ZP_04577094.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] gi|229377965|gb|EEO28056.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] Length = 182 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 76/157 (48%), Gaps = 14/157 (8%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVE-----RDDGNMTLRDCEELSQAISPI 79 + +++ + + V + +L+++++ GN+T+ DCE++S+ +S + Sbjct: 22 LQELVEKTVNGCGYDLVDLE--RASGGILRVYIDFLPEASSRGNITVDDCEKVSRQLSHV 79 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS---GDKQKLIGKIM 136 L VE++ + RLEVSSPG+DRP+ + DF+R+ G + G+++ G ++ Sbjct: 80 LTVEDV--DYDRLEVSSPGLDRPLKKWQDFVRFAGMEAHVRLRKPVTGMGNRKSFQGILL 137 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 LE E + + L I + ARL+ Sbjct: 138 PPEGDELALEFEGNDSESSSVLHFTI--TDIDKARLV 172 >gi|107022572|ref|YP_620899.1| hypothetical protein Bcen_1018 [Burkholderia cenocepacia AU 1054] gi|116689520|ref|YP_835143.1| hypothetical protein Bcen2424_1498 [Burkholderia cenocepacia HI2424] gi|170732824|ref|YP_001764771.1| hypothetical protein Bcenmc03_1474 [Burkholderia cenocepacia MC0-3] gi|254245587|ref|ZP_04938908.1| hypothetical protein BCPG_00296 [Burkholderia cenocepacia PC184] gi|122978973|sp|Q1BWS9|RIMP_BURCA RecName: Full=Ribosome maturation factor rimP gi|166979874|sp|A0K6X3|RIMP_BURCH RecName: Full=Ribosome maturation factor rimP gi|226734185|sp|B1K0L8|RIMP_BURCC RecName: Full=Ribosome maturation factor rimP gi|105892761|gb|ABF75926.1| protein of unknown function DUF150 [Burkholderia cenocepacia AU 1054] gi|116647609|gb|ABK08250.1| protein of unknown function DUF150 [Burkholderia cenocepacia HI2424] gi|124870363|gb|EAY62079.1| hypothetical protein BCPG_00296 [Burkholderia cenocepacia PC184] gi|169816066|gb|ACA90649.1| protein of unknown function DUF150 [Burkholderia cenocepacia MC0-3] Length = 152 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 39/150 (26%), Positives = 76/150 (50%), Gaps = 8/150 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I+ + + + V++ +L I++++ G ++L DCE++++ + +L VE Sbjct: 2 QLTELIETTVTGLGYELVELE--RTGRGMLCIYIDQPAG-ISLEDCEKVTRQLQHVLTVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DRP+ + +DF R+ G V+ + ++ G + + Sbjct: 59 NI--DYERLEVSSPGLDRPLKKLADFERFAGSEVSVTLKKPLDGRKTYRGILHAPNGETI 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLI 173 LE E K + + + ARLI Sbjct: 117 GLEFEG---KKGEAAMLDFTLADIDKARLI 143 >gi|167772659|ref|ZP_02444712.1| hypothetical protein ANACOL_04040 [Anaerotruncus colihominis DSM 17241] gi|167665137|gb|EDS09267.1| hypothetical protein ANACOL_04040 [Anaerotruncus colihominis DSM 17241] Length = 159 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 64/138 (46%), Gaps = 2/138 (1%) Query: 26 SSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ PV + M ++ +E L+ +++R+ G +T+ +CE S+ +S +LD + Sbjct: 16 EALAAPVAQRMGLYLWDVAFEKEGAGWYLRYYIDRE-GGVTIDECEAFSREVSDLLDEAD 74 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I+ Y LEV SPG++R + + F ++ G V ++ ++ +G + Sbjct: 75 PIDQSYTLEVGSPGVERKLTKDWHFQKYIGAQVHVRLIRPVEGERDFVGALSSYENGVVA 134 Query: 145 LEKEKRGEKDMNELQIAI 162 + + E + + A Sbjct: 135 VLLDDELEMTFSPGETAF 152 >gi|227499046|ref|ZP_03929183.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|226904495|gb|EEH90413.1| conserved hypothetical protein [Acidaminococcus sp. D21] Length = 153 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 73/151 (48%), Gaps = 8/151 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + +S + P+ E V + + E++ L+++++++ G + + DC +S + +L Sbjct: 6 IVEQVSELALPICEACGVELVDVEYVRERDWYLRVYIDKE-GGIDIDDCTAVSGDLEKVL 64 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D +++I+ Y LEVSSPGIDRP+ + SD++ G + K+ +++ E Sbjct: 65 DEKDVIKEQYYLEVSSPGIDRPLKKDSDYVDHYGKKIDVSFYAPFEGKKVQTYELVSHDE 124 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 + K+ + ++ + + S R Sbjct: 125 AHLVV-------KNFKKQKVTLERSLISSVR 148 >gi|294788743|ref|ZP_06753984.1| 15 kDa protein [Simonsiella muelleri ATCC 29453] gi|294483225|gb|EFG30911.1| 15 kDa protein [Simonsiella muelleri ATCC 29453] Length = 145 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 75/149 (50%), Gaps = 11/149 (7%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI +++ + + + V L + L++F++ + G +T+ DC +S +S + VE Sbjct: 2 DIQTILDTTLPGLGYELVDFELTAQG--TLRVFIDTE-GGITVEDCANVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 N+ + LE+SSPG+DRP+ + SDF+R++G +V + L ++ IGKI E Sbjct: 59 NV--DYKNLEISSPGLDRPLKKASDFVRFSGSLVKIKTRLPIDGQKNFIGKIDAFDENTQ 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + I ++ AR+ Sbjct: 117 IITL------AFDGKAVQIELSNVDKARI 139 >gi|261407940|ref|YP_003244181.1| hypothetical protein GYMC10_4147 [Paenibacillus sp. Y412MC10] gi|329929353|ref|ZP_08283106.1| hypothetical protein HMPREF9412_5355 [Paenibacillus sp. HGF5] gi|261284403|gb|ACX66374.1| protein of unknown function DUF150 [Paenibacillus sp. Y412MC10] gi|328936722|gb|EGG33165.1| hypothetical protein HMPREF9412_5355 [Paenibacillus sp. HGF5] Length = 153 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + ++QP ++E F V + ++E N L++FV++D + + DC +S+ +S Sbjct: 6 IKTTVEEMVQPYLDEHGFELVDVEYVKEGSNWFLRVFVDKDG-GIDIDDCGLISEHLSQK 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + I Y LEVSSPG +RP+ +K D + G V + ++ GK+ Sbjct: 65 LDENDPIPTAYFLEVSSPGAERPLKKKEDVAKSVGKNVFVTVYEPINGLKEFEGKLESFD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ K+ Q I + + SARL + Sbjct: 125 NEELVIQTAKK--------QHVIPYAKVASARLAI 151 >gi|172036757|ref|YP_001803258.1| hypothetical protein cce_1842 [Cyanothece sp. ATCC 51142] gi|259585745|sp|B1WZP0|RIMP_CYAA5 RecName: Full=Ribosome maturation factor rimP gi|171698211|gb|ACB51192.1| DUF150-containing protein [Cyanothece sp. ATCC 51142] Length = 151 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 L I + P++EEM V++ K +L++ + + +L DCE++S+A+ + Sbjct: 5 LIPQIIDLATPIVEEMGLDVVEVVFQTNKRPPVLRVDIRNPASDTSLNDCEQVSRALEAV 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD I+ G Y LE+SSPGI R + + DF+ + G V DK++ G++ G Sbjct: 65 LDETAIMPGAYVLEISSPGISRYLNSERDFIAFKGFEVNIATNPPYKDKKEWRGRLQGRD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 E +L ++ R IAI + +L Sbjct: 125 EKAVYLNRKGRA--------IAIPCAVITKVQLA 150 >gi|260887248|ref|ZP_05898511.1| putative cytoplasmic protein [Selenomonas sputigena ATCC 35185] gi|330838994|ref|YP_004413574.1| Ribosome maturation factor rimP [Selenomonas sputigena ATCC 35185] gi|260863310|gb|EEX77810.1| putative cytoplasmic protein [Selenomonas sputigena ATCC 35185] gi|329746758|gb|AEC00115.1| Ribosome maturation factor rimP [Selenomonas sputigena ATCC 35185] Length = 150 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 75/152 (49%), Gaps = 10/152 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + +++Q ++++ + V + ++E++ L+++++++ G + + DC+ +S+ + IL Sbjct: 5 IEEAVEAIVQEIVQDSNLEVVDVEYVKERDWYLRVYLDKE-GGIEIDDCQRVSETLEQIL 63 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D ++++ Y LEVSSPG+DR + + DF R G V K+ +G + G Sbjct: 64 DEKDLLTEAYILEVSSPGLDRVLKKARDFEREQGKAVDVTFYAPVDGKKTWVGTLTGYDP 123 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + E + + + RL Sbjct: 124 GKNAIVLDGEKE---------LPLEKIAQVRL 146 >gi|56460078|ref|YP_155359.1| alpha-hemolysin-like HlyA family protein [Idiomarina loihiensis L2TR] gi|81362146|sp|Q5QTY6|RIMP_IDILO RecName: Full=Ribosome maturation factor rimP gi|56179088|gb|AAV81810.1| Alpha-hemolysin-like protein, hlyA family [Idiomarina loihiensis L2TR] Length = 152 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 75/155 (48%), Gaps = 10/155 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISP 78 L ++ +I+P +E + F + + L+++++ +G +++ +C ++S +S Sbjct: 3 NLQERLTDIIRPAVEALEFELWGVEFIRAGKFSTLRVYIDHPEG-ISVDNCADVSYQVSS 61 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LDVE+ I Y LEVSSPG++RP + VA E+V + +K+K +++ Sbjct: 62 LLDVEDPINVEYNLEVSSPGMERPFFNAQQMQPYINETVAFELVAAQKNKRKFKAELIAV 121 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L ++ + ++ + +A L+ Sbjct: 122 EGEELTL--------AVDNDTLQVNMRDVKNAHLV 148 >gi|157828687|ref|YP_001494929.1| hypothetical protein A1G_04605 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933406|ref|YP_001650195.1| ribosome maturation protein RimP [Rickettsia rickettsii str. Iowa] gi|167012960|sp|A8GSP6|RIMP_RICRS RecName: Full=Ribosome maturation factor rimP gi|189040651|sp|B0BY63|RIMP_RICRO RecName: Full=Ribosome maturation factor rimP gi|157801168|gb|ABV76421.1| hypothetical protein A1G_04605 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908493|gb|ABY72789.1| hypothetical cytosolic protein [Rickettsia rickettsii str. Iowa] Length = 161 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 44/166 (26%), Positives = 88/166 (53%), Gaps = 9/166 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-MTLRDCEELSQAISPI 79 + I++VI+ + +M F V + +++I ++ + +++ DC + S+ IS I Sbjct: 4 IEQQITNVIEESLTDMGFELVLVKFKGVNPKVVEILIDSLNSEKVSVEDCTKASRTISAI 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE++IE Y LEV+S G++RP+V+ ++ R+ V ++ K + GKI+ Sbjct: 64 LDVEDLIEAAYSLEVASSGLERPLVKFENYNRFLEREVKIKLKELLNGKTRYQGKIIKAE 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 +L+ E E ++ I +D + +A L++T+E+ + L Sbjct: 124 NNKIYLKCE--------EQEVLIDYDLIKNANLVLTEEVFKKLLKQ 161 >gi|168184628|ref|ZP_02619292.1| conserved hypothetical protein [Clostridium botulinum Bf] gi|237795858|ref|YP_002863410.1| hypothetical protein CLJ_B2647 [Clostridium botulinum Ba4 str. 657] gi|259585740|sp|C3L0C0|RIMP_CLOB6 RecName: Full=Ribosome maturation factor rimP gi|182672272|gb|EDT84233.1| conserved hypothetical protein [Clostridium botulinum Bf] gi|229262492|gb|ACQ53525.1| conserved hypothetical protein [Clostridium botulinum Ba4 str. 657] Length = 153 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 81/154 (52%), Gaps = 10/154 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 L ++ I+P++E +++ I ++E K L+I+++ ++G ++L CE++S+A+S Sbjct: 5 SLIENLKKQIEPIVEGLNYELYHIEFVKEGKENYLRIYIDSENG-VSLEGCEKVSRAVSE 63 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LD + I+ Y LEVSSPGIDR + ++ G+ + + S K+K G+++ Sbjct: 64 LLDDIDPIQESYYLEVSSPGIDRVLYTDKHLEKYKGYNIVLNLYSSIDKKKKYEGELVDF 123 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +E ++ E+ + I + + L Sbjct: 124 NENEINIKVEENI--------VTIPREKISKTTL 149 >gi|296185353|ref|ZP_06853763.1| hypothetical protein CLCAR_0776 [Clostridium carboxidivorans P7] gi|296050187|gb|EFG89611.1| hypothetical protein CLCAR_0776 [Clostridium carboxidivorans P7] Length = 155 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 89/153 (58%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L +++++++P++ E+++ + L+ E K+ L+I++++++ ++L+DCE++S+A+S + Sbjct: 7 LIDELTNLVKPIVTELNYDLYYLELVREGKDNYLRIYIDKENEGISLQDCEKVSRAVSEM 66 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV++ I+ Y LEVSSPGI+R + ++ G+ V I K+K G+++ + Sbjct: 67 LDVKDPIKEGYYLEVSSPGIERILHTDEHLQKYTGNDVVVNISGLLNGKKKYEGQLVNFN 126 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ E +I+I + + + L Sbjct: 127 NEELNIKVEDE--------EISIPREKISTVNL 151 >gi|15892741|ref|NP_360455.1| hypothetical protein RC0818 [Rickettsia conorii str. Malish 7] gi|34222951|sp|Q92HF3|RIMP_RICCN RecName: Full=Ribosome maturation factor rimP gi|15619918|gb|AAL03356.1| unknown [Rickettsia conorii str. Malish 7] Length = 161 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 44/166 (26%), Positives = 88/166 (53%), Gaps = 9/166 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-MTLRDCEELSQAISPI 79 + I++VI+ + +M F V + +++I ++ + +++ DC + S+ IS I Sbjct: 4 IEQQIANVIEESLTDMGFELVLVKFKGVNPKVVEILIDSLNSEKISVEDCTKASRTISAI 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE++IE Y LEV+S G++RP+V+ ++ R+ V ++ K + GKI+ Sbjct: 64 LDVEDLIEAAYSLEVASSGLERPLVKFENYNRFLEREVKIKLKELLNGKTRYQGKIIKAE 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 +L+ E E ++ I +D + +A L++T+E+ + L Sbjct: 124 NNKIYLKCE--------EQEVLIDYDLIKNANLVLTEEVFKKLLKQ 161 >gi|322806688|emb|CBZ04257.1| clustered with transcription termination protein NusA [Clostridium botulinum H04402 065] Length = 153 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 78/154 (50%), Gaps = 10/154 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 L ++ I+P+ E + + I ++E K L+I+++ ++G ++L CE++S+A+S Sbjct: 5 SLIENLKEQIEPIAEGLDYELYHIEFVKEGKENYLRIYIDSENG-VSLEGCEKVSRAVSE 63 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LD + I+ Y LEVSSPGIDR + ++ G+ + + K+K G+++ Sbjct: 64 LLDDIDPIQESYYLEVSSPGIDRVLYTDKHLEKYKGYNIVLNLYSPIDKKKKYEGELVDF 123 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +E ++ E+ + I + + L Sbjct: 124 NENEIDIKVEENI--------VTIPREKISKTTL 149 >gi|329891252|ref|ZP_08269595.1| hypothetical protein BDIM_29650 [Brevundimonas diminuta ATCC 11568] gi|328846553|gb|EGF96117.1| hypothetical protein BDIM_29650 [Brevundimonas diminuta ATCC 11568] Length = 198 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 8/168 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERD-DGNMTLRDCEELSQAISPILDV 82 + +I PV E + V++ L+ LQI ER D ++++ +C LS+A+S +LD Sbjct: 11 LLELIDPVAESLGLAVVRVRLMGGTLRRRLQIMAERQTDHDISVEECARLSRAVSEVLDA 70 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 + I G Y LEVSSPGIDRP+ R DF + G E +++ G + GT Sbjct: 71 ADPISGEYLLEVSSPGIDRPLTRLIDFDLFEGLEARLETDRMVEGRKRFKGVVAGTEGEN 130 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 ++ + E + I F L A+L++TDELL+ + Sbjct: 131 IAIDLDGEDETAL------IPFAWLADAKLVLTDELLKRGAALRAARG 172 >gi|259016311|sp|Q7NFN6|RIMP_GLOVI RecName: Full=Ribosome maturation factor rimP Length = 156 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 75/156 (48%), Gaps = 10/156 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + ++++ +PV E++ + V ++ K L++ + L DCE++S+A+ Sbjct: 5 DIVEQVTALAEPVAEQLGLQLVAVAYQTHTKPATLRVDIRHPTEGTGLDDCEKMSRALEA 64 Query: 79 ILD-VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LD +++I G Y LEVSSPG++R + +F+ + G V + K++ G+++ Sbjct: 65 LLDTRDDLIIGAYNLEVSSPGVERVLTTDREFMAFRGFPVMVKTFGPVDGKKQWEGRLLE 124 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 +L R ++A+ + +L+ Sbjct: 125 RDGENVYLTIAGR--------RVALPRPQVARVQLV 152 >gi|255524232|ref|ZP_05391191.1| protein of unknown function DUF150 [Clostridium carboxidivorans P7] gi|255512057|gb|EET88338.1| protein of unknown function DUF150 [Clostridium carboxidivorans P7] Length = 154 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 89/153 (58%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L +++++++P++ E+++ + L+ E K+ L+I++++++ ++L+DCE++S+A+S + Sbjct: 6 LIDELTNLVKPIVTELNYDLYYLELVREGKDNYLRIYIDKENEGISLQDCEKVSRAVSEM 65 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV++ I+ Y LEVSSPGI+R + ++ G+ V I K+K G+++ + Sbjct: 66 LDVKDPIKEGYYLEVSSPGIERILHTDEHLQKYTGNDVVVNISGLLNGKKKYEGQLVNFN 125 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ E +I+I + + + L Sbjct: 126 NEELNIKVEDE--------EISIPREKISTVNL 150 >gi|242278480|ref|YP_002990609.1| hypothetical protein Desal_1005 [Desulfovibrio salexigens DSM 2638] gi|259585762|sp|C6C0D6|RIMP_DESAD RecName: Full=Ribosome maturation factor rimP gi|242121374|gb|ACS79070.1| protein of unknown function DUF150 [Desulfovibrio salexigens DSM 2638] Length = 155 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 7/154 (4%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 LA +S ++P IE M + + + I+++ ++G +++ C E+S+ + + Sbjct: 5 SLAKKVSQFVEPTIESMGLTLWGVEVTSANRPAVIIYIDSENG-VSIDQCAEVSRDVGLM 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 L+VE +I+ Y LEVSSPG++R + + G + +V S ++K G + T Sbjct: 64 LEVEEVIDSAYVLEVSSPGLERKFFKPEQMSAYVGKKIDIALVFSLEGRKKFKGLLQETD 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 E G L+ E + E I I +D + A+LI Sbjct: 124 EEGLLLKLEDQ------EDPIKIEWDRIKKAKLI 151 >gi|53719534|ref|YP_108520.1| hypothetical protein BPSL1920 [Burkholderia pseudomallei K96243] gi|53724823|ref|YP_102762.1| hypothetical protein BMA1063 [Burkholderia mallei ATCC 23344] gi|67641343|ref|ZP_00440123.1| conserved hypothetical protein [Burkholderia mallei GB8 horse 4] gi|83720636|ref|YP_443083.1| hypothetical protein BTH_I2566 [Burkholderia thailandensis E264] gi|121601076|ref|YP_992839.1| hypothetical protein BMASAVP1_A1509 [Burkholderia mallei SAVP1] gi|124386071|ref|YP_001026182.1| hypothetical protein BMA10229_A0177 [Burkholderia mallei NCTC 10229] gi|126439674|ref|YP_001058777.1| hypothetical protein BURPS668_1738 [Burkholderia pseudomallei 668] gi|126448900|ref|YP_001080548.1| hypothetical protein BMA10247_0989 [Burkholderia mallei NCTC 10247] gi|126452322|ref|YP_001066029.1| hypothetical protein BURPS1106A_1760 [Burkholderia pseudomallei 1106a] gi|134282401|ref|ZP_01769106.1| conserved hypothetical protein [Burkholderia pseudomallei 305] gi|167004350|ref|ZP_02270108.1| conserved hypothetical protein [Burkholderia mallei PRL-20] gi|167562941|ref|ZP_02355857.1| hypothetical protein BoklE_10300 [Burkholderia oklahomensis EO147] gi|167582088|ref|ZP_02374962.1| hypothetical protein BthaT_28352 [Burkholderia thailandensis TXDOH] gi|167620249|ref|ZP_02388880.1| hypothetical protein BthaB_28340 [Burkholderia thailandensis Bt4] gi|167719820|ref|ZP_02403056.1| hypothetical protein BpseD_12440 [Burkholderia pseudomallei DM98] gi|167738821|ref|ZP_02411595.1| hypothetical protein Bpse14_12188 [Burkholderia pseudomallei 14] gi|167816042|ref|ZP_02447722.1| hypothetical protein Bpse9_12932 [Burkholderia pseudomallei 91] gi|167824418|ref|ZP_02455889.1| hypothetical protein Bpseu9_12158 [Burkholderia pseudomallei 9] gi|167836823|ref|ZP_02463706.1| hypothetical protein Bpse38_10070 [Burkholderia thailandensis MSMB43] gi|167845950|ref|ZP_02471458.1| hypothetical protein BpseB_11725 [Burkholderia pseudomallei B7210] gi|167894527|ref|ZP_02481929.1| hypothetical protein Bpse7_12319 [Burkholderia pseudomallei 7894] gi|167902932|ref|ZP_02490137.1| hypothetical protein BpseN_11790 [Burkholderia pseudomallei NCTC 13177] gi|167919192|ref|ZP_02506283.1| hypothetical protein BpseBC_11610 [Burkholderia pseudomallei BCC215] gi|217423492|ref|ZP_03454993.1| conserved hypothetical protein [Burkholderia pseudomallei 576] gi|226199708|ref|ZP_03795261.1| conserved hypothetical protein [Burkholderia pseudomallei Pakistan 9] gi|237812040|ref|YP_002896491.1| hypothetical protein GBP346_A1782 [Burkholderia pseudomallei MSHR346] gi|242317839|ref|ZP_04816855.1| conserved hypothetical protein [Burkholderia pseudomallei 1106b] gi|254178698|ref|ZP_04885353.1| conserved hypothetical protein [Burkholderia mallei ATCC 10399] gi|254179982|ref|ZP_04886581.1| conserved hypothetical protein [Burkholderia pseudomallei 1655] gi|254188606|ref|ZP_04895117.1| conserved hypothetical protein [Burkholderia pseudomallei Pasteur 52237] gi|254197760|ref|ZP_04904182.1| conserved hypothetical protein [Burkholderia pseudomallei S13] gi|254199710|ref|ZP_04906076.1| conserved hypothetical protein [Burkholderia mallei FMH] gi|254206032|ref|ZP_04912384.1| conserved hypothetical protein [Burkholderia mallei JHU] gi|254297817|ref|ZP_04965270.1| conserved hypothetical protein [Burkholderia pseudomallei 406e] gi|254358406|ref|ZP_04974679.1| conserved hypothetical protein [Burkholderia mallei 2002721280] gi|257139312|ref|ZP_05587574.1| hypothetical protein BthaA_08929 [Burkholderia thailandensis E264] gi|81379645|sp|Q63TP6|RIMP_BURPS RecName: Full=Ribosome maturation factor rimP gi|81605125|sp|Q62KK7|RIMP_BURMA RecName: Full=Ribosome maturation factor rimP gi|123536573|sp|Q2SVG6|RIMP_BURTA RecName: Full=Ribosome maturation factor rimP gi|166980214|sp|A3N8V6|RIMP_BURP6 RecName: Full=Ribosome maturation factor rimP gi|166980223|sp|A3NUK8|RIMP_BURP0 RecName: Full=Ribosome maturation factor rimP gi|166987486|sp|A2S2L3|RIMP_BURM9 RecName: Full=Ribosome maturation factor rimP gi|166990761|sp|A1V3N6|RIMP_BURMS RecName: Full=Ribosome maturation factor rimP gi|166990846|sp|A3MJW2|RIMP_BURM7 RecName: Full=Ribosome maturation factor rimP gi|52209948|emb|CAH35920.1| conserved hypothetical protein [Burkholderia pseudomallei K96243] gi|52428246|gb|AAU48839.1| conserved hypothetical protein [Burkholderia mallei ATCC 23344] gi|83654461|gb|ABC38524.1| Uncharacterized BCR, YhbC family COG0779 superfamily [Burkholderia thailandensis E264] gi|121229886|gb|ABM52404.1| conserved hypothetical protein [Burkholderia mallei SAVP1] gi|124294091|gb|ABN03360.1| conserved hypothetical protein [Burkholderia mallei NCTC 10229] gi|126219167|gb|ABN82673.1| conserved hypothetical protein [Burkholderia pseudomallei 668] gi|126225964|gb|ABN89504.1| conserved hypothetical protein [Burkholderia pseudomallei 1106a] gi|126241770|gb|ABO04863.1| conserved hypothetical protein [Burkholderia mallei NCTC 10247] gi|134246439|gb|EBA46528.1| conserved hypothetical protein [Burkholderia pseudomallei 305] gi|147749306|gb|EDK56380.1| conserved hypothetical protein [Burkholderia mallei FMH] gi|147753475|gb|EDK60540.1| conserved hypothetical protein [Burkholderia mallei JHU] gi|148027533|gb|EDK85554.1| conserved hypothetical protein [Burkholderia mallei 2002721280] gi|157806885|gb|EDO84055.1| conserved hypothetical protein [Burkholderia pseudomallei 406e] gi|157936285|gb|EDO91955.1| conserved hypothetical protein [Burkholderia pseudomallei Pasteur 52237] gi|160699737|gb|EDP89707.1| conserved hypothetical protein [Burkholderia mallei ATCC 10399] gi|169654501|gb|EDS87194.1| conserved hypothetical protein [Burkholderia pseudomallei S13] gi|184210522|gb|EDU07565.1| conserved hypothetical protein [Burkholderia pseudomallei 1655] gi|217393350|gb|EEC33371.1| conserved hypothetical protein [Burkholderia pseudomallei 576] gi|225928294|gb|EEH24328.1| conserved hypothetical protein [Burkholderia pseudomallei Pakistan 9] gi|237503609|gb|ACQ95927.1| conserved hypothetical protein [Burkholderia pseudomallei MSHR346] gi|238522260|gb|EEP85705.1| conserved hypothetical protein [Burkholderia mallei GB8 horse 4] gi|242141078|gb|EES27480.1| conserved hypothetical protein [Burkholderia pseudomallei 1106b] gi|243060318|gb|EES42504.1| conserved hypothetical protein [Burkholderia mallei PRL-20] Length = 153 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 73/150 (48%), Gaps = 8/150 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I+ + + + V + ++ +++++ G +T+ DCE++++ + +L VE Sbjct: 2 QLTELIETTVTGLGYELVDLE--RTGRGMVCVYIDQPAG-ITIDDCEKVTRQLQHVLTVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DRP+ + +DF R+ G + ++ G + + Sbjct: 59 NI--DYERLEVSSPGLDRPLKKLADFTRFAGSEAVITLKKPLDGRKTYRGILHAPNGETI 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLI 173 LE E K + + + ARLI Sbjct: 117 GLEFE---RKKGEAAMLDFTLADIDKARLI 143 >gi|206889666|ref|YP_002248540.1| YlxS [Thermodesulfovibrio yellowstonii DSM 11347] gi|259645127|sp|B5YJX5|RIMP_THEYD RecName: Full=Ribosome maturation factor rimP gi|206741604|gb|ACI20661.1| YlxS [Thermodesulfovibrio yellowstonii DSM 11347] Length = 164 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 53/159 (33%), Positives = 80/159 (50%), Gaps = 6/159 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L I+ V E+ V + K L L+IF++++ G +T++DCE S+AI I Sbjct: 6 LKDKITDYANIVGEQEGVEIVNVEIYPGGKGLTLRIFIDKE-GGVTIKDCENFSRAIEAI 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I+ Y LEVSSPGIDRP+ K DFLR G V D IGKI+ Sbjct: 65 LDVEDPIKSSYTLEVSSPGIDRPLKNKKDFLRNIGRDVKITTKEKIADNTFFIGKIVDVG 124 Query: 140 ETGFFLEKEKRGEKDMNELQIA----ISFDSLLSARLIV 174 + +E ++ K + I F+ ++ A++ + Sbjct: 125 DDWVRIEIQETKIKGSKKKGKTELLFIPFNKIIKAQVYL 163 >gi|160892798|ref|ZP_02073588.1| hypothetical protein CLOL250_00329 [Clostridium sp. L2-50] gi|156865839|gb|EDO59270.1| hypothetical protein CLOL250_00329 [Clostridium sp. L2-50] Length = 142 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 74/135 (54%), Gaps = 2/135 (1%) Query: 28 VIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 ++ P+IE + V + ++E + L+I+ +++ G +T+ DCE +++A+S +LD ++ I Sbjct: 1 MVLPIIEANNLELVDVEYVKEGSDYYLRIYADKE-GGITIGDCEIVNRAMSDLLDADDFI 59 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE 146 + Y LEVSSPG+ RP+ +++DF R G +V + + + G++ E + Sbjct: 60 KDAYILEVSSPGLTRPLKKENDFKRSIGKIVEIKTYTKIDNCKDFEGELTAYDEETVTIL 119 Query: 147 KEKRGEKDMNELQIA 161 E E + I+ Sbjct: 120 TEDEKELKIARKDIS 134 >gi|91774421|ref|YP_544177.1| hypothetical protein Mfla_0065 [Methylobacillus flagellatus KT] gi|122399243|sp|Q1GXD8|RIMP_METFK RecName: Full=Ribosome maturation factor rimP gi|91708408|gb|ABE48336.1| protein of unknown function DUF150 [Methylobacillus flagellatus KT] Length = 144 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 82/150 (54%), Gaps = 11/150 (7%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 D++++++ + ++ + V + L + L+++F+++ +G + + DC +S +S +L V Sbjct: 2 QDLNALLERSLGQLGYELVDMELAN-RGKLIRLFIDKPEG-INIDDCVLVSNHLSNLLAV 59 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ I + RLE+SSPG+DR + + SDF+R+ G ++ + ++ +G + G + Sbjct: 60 EHDI-DYDRLEISSPGLDRVLKKTSDFVRFAGERAQVKLRMPIEGRKNFLGILRGVDQEY 118 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARL 172 LE + ++ + F ++ ARL Sbjct: 119 LVLECDG--------VEQRVPFSNIDKARL 140 >gi|113868283|ref|YP_726772.1| hypothetical protein H16_A2308 [Ralstonia eutropha H16] gi|123032887|sp|Q0K9B7|RIMP_RALEH RecName: Full=Ribosome maturation factor rimP gi|113527059|emb|CAJ93404.1| conserved hypothetical protein [Ralstonia eutropha H16] Length = 162 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 77/153 (50%), Gaps = 12/153 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I+ + M + V++ LL++++++ + + + DCE++S+ ++ + VEN Sbjct: 3 LADLIETTLSGMGYELVELERAPAG--LLRVYIDQPETGIAIEDCEKVSRQLTHVFTVEN 60 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM----GTSE 140 + + RLEVSSPG+DRP+ + +D++R+ G + L ++ G + E Sbjct: 61 V--DYERLEVSSPGLDRPLKKLADYVRFAGEEARVTLRLPVNGQKNFTGILREPTGAAGE 118 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 LE E + + E + + ARL+ Sbjct: 119 EKIGLEFEGKDGPALLEFAV----SDVDKARLV 147 >gi|298528713|ref|ZP_07016117.1| protein of unknown function DUF150 [Desulfonatronospira thiodismutans ASO3-1] gi|298512365|gb|EFI36267.1| protein of unknown function DUF150 [Desulfonatronospira thiodismutans ASO3-1] Length = 154 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 67/156 (42%), Gaps = 11/156 (7%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL---LLQIFVERDDGNMTLRDCEELSQAIS 77 + + ++Q M + + +L++FV+ +G +++ C +LS+ +S Sbjct: 6 IKKQVEELVQTNCRLMGLEPWGMDFVPGTGKQRGVLRVFVDSPEG-VSIDQCADLSRQLS 64 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LDVE+++ G Y LEVSSPG++R R + GH V + ++ G + Sbjct: 65 VALDVEDLVPGSYNLEVSSPGLNRRFFRPEQMSGYTGHKVKITLKEPRDGRKNFTGTLQE 124 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 ++ + + +D + ARL+ Sbjct: 125 AENETISIQT-------SPDCTWSFQWDEIDRARLV 153 >gi|116748666|ref|YP_845353.1| hypothetical protein Sfum_1226 [Syntrophobacter fumaroxidans MPOB] gi|259645123|sp|A0LHL6|RIMP_SYNFM RecName: Full=Ribosome maturation factor rimP gi|116697730|gb|ABK16918.1| protein of unknown function DUF150 [Syntrophobacter fumaroxidans MPOB] Length = 168 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 75/153 (49%), Gaps = 10/153 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + + +PVI ++I E +L++FV+++ G +++ DC +S+ + + Sbjct: 17 IVRQVWDLTEPVIRAEGMEIIEIEYRRESPGWVLRVFVDQE-GGVSVDDCARISRVVGDL 75 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV +II Y LEVSSPG++RP+ ++ F + G V+ + ++ G ++ G + Sbjct: 76 LDVADIIHYPYHLEVSSPGLNRPLRKREQFAKVVGKVIEVKTLVPFGTRRNFKGILKEVG 135 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + D + I F ++ ARL Sbjct: 136 VERIRM--------DCDNQLFEIPFSNMDRARL 160 >gi|257452236|ref|ZP_05617535.1| putative cytoplasmic protein [Fusobacterium sp. 3_1_5R] gi|317058779|ref|ZP_07923264.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R] gi|313684455|gb|EFS21290.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R] Length = 153 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 76/155 (49%), Gaps = 11/155 (7%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISP 78 + I ++ P EE+ V + +++ ++++VE+ +G++ L DC LS I Sbjct: 3 SVVQKIEKIVIPAAEELGLSLVDVEYMQDGGYWYVRVYVEKLEGDVNLEDCASLSGKIED 62 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +D +I+ + LEVSSPGI+RP+ ++SDF+R+ G + + +K+ + G + Sbjct: 63 AVDQ--LIDKKFFLEVSSPGIERPLKKESDFIRFTGEKIFVALKHKLNEKRNIEGILRAY 120 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 LE + ++ I F + A L+ Sbjct: 121 ENQSLLLEVDGE--------ELQIPFSEVKKAHLV 147 >gi|224825863|ref|ZP_03698967.1| protein of unknown function DUF150 [Lutiella nitroferrum 2002] gi|224602087|gb|EEG08266.1| protein of unknown function DUF150 [Lutiella nitroferrum 2002] Length = 141 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 41/149 (27%), Positives = 76/149 (51%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 D+ +++ + + + V L ++F+++ G +T+ DC +S ++ + VE Sbjct: 2 DVRLLLENTLPGLGYELVDFELTPGGG--FRVFLDKP-GGITVEDCVLVSNHLTRLFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DRP+ ++SDF+R++G + + ++K G++ G + Sbjct: 59 NI--DYERLEVSSPGLDRPLKKESDFVRFSGQRAKIKTRMPIEQQKKFSGRLAGVVDGAV 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 LE E R +AI + ARL Sbjct: 117 QLEFEGR--------TVAIPLAVIDKARL 137 >gi|167570130|ref|ZP_02363004.1| hypothetical protein BoklC_09816 [Burkholderia oklahomensis C6786] Length = 153 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 73/150 (48%), Gaps = 8/150 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I+ + + + V + ++ +++++ G +T+ DCE++++ + +L VE Sbjct: 2 QLTELIETTVTGLGYELVDLE--RTGRGMVCVYIDQPAG-ITIDDCEKVTRQLQHVLTVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DRP+ + +DF R+ G + ++ G + + Sbjct: 59 NI--DYERLEVSSPGLDRPLKKLADFTRFAGSEAVITLKKPLDGRKTYRGILYAPNGETI 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLI 173 LE E K + + + ARLI Sbjct: 117 GLEFE---RKKGEAAMLDFTLADIDKARLI 143 >gi|34581536|ref|ZP_00143016.1| hypothetical protein [Rickettsia sibirica 246] gi|229586875|ref|YP_002845376.1| hypothetical protein RAF_ORF0746 [Rickettsia africae ESF-5] gi|259586186|sp|C3PNX3|RIMP_RICAE RecName: Full=Ribosome maturation factor rimP gi|28262921|gb|EAA26425.1| unknown [Rickettsia sibirica 246] gi|228021925|gb|ACP53633.1| Unknown [Rickettsia africae ESF-5] Length = 161 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 44/166 (26%), Positives = 87/166 (52%), Gaps = 9/166 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-MTLRDCEELSQAISPI 79 + I++VI+ + +M F V + +++I ++ + +++ DC + S+ IS I Sbjct: 4 IEQQIANVIEESLTDMGFELVLVKFKGVNPKVVEILIDSLNSEKISVEDCTKASRTISAI 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE++IE Y LEV+S G++RP+V+ ++ R+ V + K + GKI+ Sbjct: 64 LDVEDLIEAAYSLEVASSGLERPLVKFENYNRFLEREVKITLKELLNGKTRYQGKIIKAE 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 +L+ E E ++ I +D + +A L++T+E+ + L Sbjct: 124 NNKIYLKCE--------EQEVLIDYDLIKNANLVLTEEVFKKLLKQ 161 >gi|259016316|sp|Q9PGR5|RIMP_XYLFA RecName: Full=Ribosome maturation factor rimP Length = 199 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 43/172 (25%), Positives = 83/172 (48%), Gaps = 13/172 (7%) Query: 24 DISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVE-----RDDGNMTLRDCEELSQAIS 77 +I +++ P +E + F + L +L+++++ + + +++ DCE +S+ +S Sbjct: 7 EIVNLLAPKVETLGFELLGAEYLLVPSGAILRLYIDTPFAMQPECMVSIDDCERVSREVS 66 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LDVE I G+Y LEVSSPG+DR + F R V + L ++L GKI+ Sbjct: 67 AYLDVEEPISGNYTLEVSSPGLDRRLFTLEQFARHYNQFVKVGLKLPQHGSRRLQGKIVR 126 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD-ELLRASLNNYGS 188 + + +N +++A+ F+++ AR++ L A L Sbjct: 127 VE------QVDGFVVLLVNGVELAVDFNNIDKARIVPDWSALGLAPLEKSKP 172 >gi|313115475|ref|ZP_07800940.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310622185|gb|EFQ05675.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 161 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 63/129 (48%), Gaps = 3/129 (2%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 A + ++++P +E M R + +E + L++ +++ DG M C ++S A+ PIL Sbjct: 10 AQRVEALVRPTVEGMGLRLWDVVFEKEGPDWYLRVLIDK-DGTMDTDTCADVSHALDPIL 68 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS-SGDKQKLIGKIMGTS 139 D + I+ Y LEV SPG+ R + R + G + +++ + ++ G + G Sbjct: 69 DEADPIDQSYYLEVGSPGLGRKLTRPEHYEALKGQKIRVKLIRPNADGVREFSGILTGRE 128 Query: 140 ETGFFLEKE 148 + + + Sbjct: 129 GSTVTVNTD 137 >gi|115351433|ref|YP_773272.1| hypothetical protein Bamb_1380 [Burkholderia ambifaria AMMD] gi|170700024|ref|ZP_02891049.1| protein of unknown function DUF150 [Burkholderia ambifaria IOP40-10] gi|171317090|ref|ZP_02906293.1| protein of unknown function DUF150 [Burkholderia ambifaria MEX-5] gi|172060472|ref|YP_001808124.1| hypothetical protein BamMC406_1420 [Burkholderia ambifaria MC40-6] gi|122323374|sp|Q0BFY5|RIMP_BURCM RecName: Full=Ribosome maturation factor rimP gi|226734154|sp|B1YP34|RIMP_BURA4 RecName: Full=Ribosome maturation factor rimP gi|115281421|gb|ABI86938.1| protein of unknown function DUF150 [Burkholderia ambifaria AMMD] gi|170135083|gb|EDT03386.1| protein of unknown function DUF150 [Burkholderia ambifaria IOP40-10] gi|171097724|gb|EDT42551.1| protein of unknown function DUF150 [Burkholderia ambifaria MEX-5] gi|171992989|gb|ACB63908.1| protein of unknown function DUF150 [Burkholderia ambifaria MC40-6] Length = 152 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 39/150 (26%), Positives = 75/150 (50%), Gaps = 8/150 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I+ + + + V + +L I++++ G ++L DCE++++ + +L VE Sbjct: 2 QLTELIETTVTGLGYELVDLE--RTGRGMLCIYIDQLAG-ISLEDCEKVTRQLQHVLTVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DRP+ + +DF R+ G V+ + ++ G + + Sbjct: 59 NI--DYERLEVSSPGLDRPLKKLADFERFAGSEVSVTLKKPLDGRKTYRGILHAPNGETI 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLI 173 LE E K + + + ARLI Sbjct: 117 GLEFEG---KKGEAAMLDFTLADIDKARLI 143 >gi|118443860|ref|YP_878212.1| hypothetical protein NT01CX_2139 [Clostridium novyi NT] gi|259585741|sp|A0Q0R0|RIMP_CLONN RecName: Full=Ribosome maturation factor rimP gi|118134316|gb|ABK61360.1| Hypothetical UPF0090 protein [Clostridium novyi NT] Length = 154 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 77/148 (52%), Gaps = 10/148 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILD 81 +I+ +I+P++EE+++ I + E+N L+I+++ G + L DCE++S+ +S ILD Sbjct: 9 DEINKLIKPIVEELNYELYYIEYVREQNENYLRIYIDSSKG-INLEDCEKVSRKVSDILD 67 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 ++ I Y LEVSSPGI+R + + ++ + + ++ ++ G ++ ++ Sbjct: 68 EKDPISDSYYLEVSSPGIERVLYTEEHLHKYTNNQIIVKLAKLFEGSREHQGNLISFNDD 127 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLS 169 +EKE I I + + Sbjct: 128 TVTIEKENES--------INIPRERIKK 147 >gi|325981568|ref|YP_004293970.1| hypothetical protein NAL212_0881 [Nitrosomonas sp. AL212] gi|325531087|gb|ADZ25808.1| protein of unknown function DUF150 [Nitrosomonas sp. AL212] Length = 155 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 42/163 (25%), Positives = 83/163 (50%), Gaps = 14/163 (8%) Query: 11 YEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCE 70 + P +A + +++ + + + V++ N LL+IFV++ +G + + DC Sbjct: 4 FSPFFICGGAMA--LEELLESTLHGLGYELVEVE-RSAHNKLLRIFVDKAEG-ICIDDCV 59 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 +S +S +L VENI + RLEVSSPG+DRP+ R++DF+R+ G + ++ + ++ Sbjct: 60 TISNHLSRLLAVENI--DYGRLEVSSPGLDRPLRREADFIRFRGETIKLKLRIPLEGQKN 117 Query: 131 LIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 +G + LE E + + + ++ ARL+ Sbjct: 118 FVGILREVDNGIIKLEIEGK--------LLDLELSNVGKARLV 152 >gi|94971245|ref|YP_593293.1| hypothetical protein Acid345_4219 [Candidatus Koribacter versatilis Ellin345] gi|259585655|sp|Q1IIT1|RIMP_ACIBL RecName: Full=Ribosome maturation factor rimP gi|94553295|gb|ABF43219.1| protein of unknown function DUF150 [Candidatus Koribacter versatilis Ellin345] Length = 169 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 79/164 (48%), Gaps = 13/164 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + +++ V + V++ K +L+I +++ +G +T DC +S +S IL Sbjct: 4 IEKVREIVERVARDYGLEVVEVEFRGGGKARMLRITIDKPEG-VTHDDCSHVSNEVSTIL 62 Query: 81 DVENIIEGH-YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 DVE+++ G Y LEVSSPG+DR + + +DF R+ G +V + G++ + Sbjct: 63 DVEDVVPGASYTLEVSSPGLDRKISKPADFERFTGSLVKVSTREPLDGNRHFEGRLESFA 122 Query: 140 ETGFFLE----------KEKRGEKDMNELQIAISFDSLLSARLI 173 + ++ K+K + + E ++ I+ + A L+ Sbjct: 123 DGKLTIDLNAVPQRGQKKQKGPKAPVVERKVEIALADVEKANLV 166 >gi|218439320|ref|YP_002377649.1| hypothetical protein PCC7424_2360 [Cyanothece sp. PCC 7424] gi|226701263|sp|B7KIU5|RIMP_CYAP7 RecName: Full=Ribosome maturation factor rimP gi|218172048|gb|ACK70781.1| protein of unknown function DUF150 [Cyanothece sp. PCC 7424] Length = 155 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 L I + P+ E++ V++ K +L++ + + L DCE++S+++ Sbjct: 5 LIPQIIDLATPIAEKLGLEIVEVVFQTNKRPPVLRLDIRNLSSDTGLDDCEQMSRSLEAT 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD +I G Y LE+SSPGI R + +F+ + G V + ++++ G + G Sbjct: 65 LDATELIPGSYVLEISSPGISRQLTSDREFIAFKGFEVIVKTYTPYENQKEWRGNLQGRD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 E +L K+ R IAI + +L Sbjct: 125 EQAVYLNKKGRA--------IAIPRQLVAKVQL 149 >gi|225849797|ref|YP_002730031.1| hypothetical protein PERMA_0235 [Persephonella marina EX-H1] gi|259586177|sp|C0QTL6|RIMP_PERMH RecName: Full=Ribosome maturation factor rimP gi|225645648|gb|ACO03834.1| conserved hypothetical protein [Persephonella marina EX-H1] Length = 151 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 74/155 (47%), Gaps = 9/155 (5%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + + ++QP++EE + V I + E +L+I++ +G T+ DCE +S+ I Sbjct: 2 KQEIIEKVKEMLQPLLEERGLKLVDIEYVTEGKPVLRIYIYNPEGT-TIEDCEWISRRIG 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LD+E++I Y LEVSSPG++R + ++ + G + + K + G + G Sbjct: 61 ALLDIEDLIPVSYTLEVSSPGLERKLKNVEEYDIFKGRDIKIVLKEPVDKKNVIKGVLKG 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + ++ I +++ A L Sbjct: 121 REDNNIIV--------EEEGEEVRIPLENIARANL 147 >gi|260881110|ref|ZP_05403661.2| hypothetical protein MITSMUL_03619 [Mitsuokella multacida DSM 20544] gi|260849563|gb|EEX69570.1| hypothetical protein MITSMUL_03619 [Mitsuokella multacida DSM 20544] Length = 211 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 73/158 (46%), Gaps = 13/158 (8%) Query: 16 FGDMGLAGDISSVIQPVIEEMSF-RSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + +++Q ++++ V ++E + L+++++++ G + + DC+ LS+ Sbjct: 62 MAKQQVEDAVEAIVQELLKDQDVIELVDAEYVKEHDWYLRVYIDKE-GGIDIEDCQALSE 120 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 + LD +++ Y LEVSSPGIDR + + DF R G V + K+ ++G+ Sbjct: 121 KLEEALDKGDVVPDSYILEVSSPGIDRVLRKPRDFTREQGKKVDVTLYAPREGKKLVVGE 180 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + G L+ E + I + RL Sbjct: 181 LTGFDGDAIELDGETK-----------IPLADIAQVRL 207 >gi|320530107|ref|ZP_08031177.1| hypothetical protein HMPREF9555_01262 [Selenomonas artemidis F0399] gi|320137540|gb|EFW29452.1| hypothetical protein HMPREF9555_01262 [Selenomonas artemidis F0399] Length = 149 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 73/157 (46%), Gaps = 17/157 (10%) Query: 21 LAGDISSVIQPVIEEM-----SFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 ++ I ++ ++ ++ V + + E++ L+++++++ G + + DC LS+ Sbjct: 1 MSAKIEERVEEIVRDLLPVQPELELVDVEYVRERDWYLRVYIDKE-GGIDIEDCRMLSEH 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 + +LD E+ I Y LEVSSPG+DR + + DF R +G V + K+ L G + Sbjct: 60 LEEVLDREDFISDAYILEVSSPGLDRVLRKARDFEREHGKRVDVALYAPLDGKKNLTGAL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G L+ + + I + + RL Sbjct: 120 TGYDGNVLILDDD-----------VRIPMEQVSQVRL 145 >gi|254302279|ref|ZP_04969637.1| hypothetical protein FNP_2331 [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322471|gb|EDK87721.1| hypothetical protein FNP_2331 [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 156 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 77/156 (49%), Gaps = 11/156 (7%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAI 76 + + I+ +I P IEEM V + +++ ++IF+E +G++ + DC +LS I Sbjct: 4 NNQIVEKITKIINPFIEEMGLSLVDVEYVQDGGYWYVRIFIENLNGDLNIEDCSKLSSKI 63 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 VE +IE + LEVSSPG++RP+ + D++R+ G + + DK++ I Sbjct: 64 EDK--VEELIEHKFFLEVSSPGLERPLKKLEDYIRFTGEKITLHLKHKLDDKKQFKAIIK 121 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + +K+ +I I F+ + A + Sbjct: 122 EVNGDNIIFLIDKK--------EIEIKFNEIRKANI 149 >gi|310828068|ref|YP_003960425.1| hypothetical protein ELI_2480 [Eubacterium limosum KIST612] gi|308739802|gb|ADO37462.1| Uncharacterized protein conserved in bacteria [Eubacterium limosum KIST612] Length = 154 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 36/138 (26%), Positives = 70/138 (50%), Gaps = 2/138 (1%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +I PV+E + V ++ + K+ +L +++ +G + L DCE +S+ +S ++D + Sbjct: 10 LEELIAPVVEAEGYECVDVTFEKAGKDWVLTTYIDGPNG-IGLDDCEVVSRKLSDLMDEK 68 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + IE Y LEVSSPGIDRP+ ++ DF R + ++L G + G Sbjct: 69 DPIEQSYLLEVSSPGIDRPLKKEKDFARNMDKRIVVSFYAPVNGSKQLSGILKGYKGVTL 128 Query: 144 FLEKEKRGEKDMNELQIA 161 L+ + ++ ++ Sbjct: 129 TLQLDSEEMMELEMSAVS 146 >gi|295102729|emb|CBL00274.1| Uncharacterized protein conserved in bacteria [Faecalibacterium prausnitzii L2-6] Length = 161 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 35/129 (27%), Positives = 65/129 (50%), Gaps = 3/129 (2%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 A + ++++PV+E M R + +E + L++ ++R DG M C E+S A+ PIL Sbjct: 10 AQRVEALVRPVVEGMGLRLWDVVFEKEGPDWYLRVLIDR-DGTMDTDTCAEVSHALDPIL 68 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS-SGDKQKLIGKIMGTS 139 D + I+ Y LEV SPG+ R + R + G + +++ + ++ G + G Sbjct: 69 DEADPIDQSYYLEVGSPGLGRKLTRPEHYEALKGEKIGVKLIRPTADGVREFAGILKGRE 128 Query: 140 ETGFFLEKE 148 + +E E Sbjct: 129 GSTVTVETE 137 >gi|331269631|ref|YP_004396123.1| hypothetical protein CbC4_1447 [Clostridium botulinum BKT015925] gi|329126181|gb|AEB76126.1| Hypothetical UPF0090 protein [Clostridium botulinum BKT015925] Length = 154 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 34/149 (22%), Positives = 77/149 (51%), Gaps = 10/149 (6%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPIL 80 I+ +++P++E +++ I + E+N L+I+++ G + L DC+++S+ +S +L Sbjct: 8 IDKINELVRPIVEGLNYELYYIEYVREQNENYLRIYIDSSKG-INLEDCQKVSRKVSDML 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D ++ IE Y LEVSSPGI+R + ++ + + ++ ++ GK++ ++ Sbjct: 67 DEKDPIEDGYYLEVSSPGIERILHTDEHLHKYINNQIVIKLAKLFEGSREHQGKLLSFND 126 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLS 169 +EK+ ++I D + Sbjct: 127 ESITMEKDNE--------NVSIPRDRIKK 147 >gi|332968910|gb|EGK07957.1| protein of hypothetical function DUF150 [Kingella kingae ATCC 23330] Length = 145 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 73/149 (48%), Gaps = 11/149 (7%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI +++ + + + V L + L++F++++ G +T+ DC +S ++ + VE Sbjct: 2 DIQNILDTTLPGLGYELVDFELTAQG--TLRVFIDKE-GGITVEDCATVSNHLNRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 ++ + LE+SSPG+DRP+ + SDF+R+ G + L ++ IG+I E Sbjct: 59 DV--DYKNLEISSPGLDRPLKKASDFVRFAGSQAKIKTRLPVDGQKNFIGRIESFDEATQ 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + G+ I ++ AR+ Sbjct: 117 MITLSFDGKVA------QIELSNVDKARI 139 >gi|194289951|ref|YP_002005858.1| hypothetical protein RALTA_A1852 [Cupriavidus taiwanensis LMG 19424] gi|226696147|sp|B3R1E6|RIMP_CUPTR RecName: Full=Ribosome maturation factor rimP gi|193223786|emb|CAQ69793.1| conserved hypothetical protein [Cupriavidus taiwanensis LMG 19424] Length = 162 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 77/153 (50%), Gaps = 12/153 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I+ + M + V++ LL++++++ + + + DCE++S+ ++ + VEN Sbjct: 3 LADLIETTLSGMGYELVELERAPAG--LLRVYIDQPETGIAIEDCEKVSRQLTHVFTVEN 60 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM----GTSE 140 + + RLEVSSPG+DRP+ + +DF+R+ G + L ++ G + E Sbjct: 61 V--DYERLEVSSPGLDRPLKKLADFVRFAGAEARVTLRLPVNGQKNFTGILREPTGAAGE 118 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 LE E + + E + + ARL+ Sbjct: 119 EKIGLEFEGKDGPALLEFAV----SDVDKARLV 147 >gi|302381339|ref|YP_003817162.1| hypothetical protein Bresu_0224 [Brevundimonas subvibrioides ATCC 15264] gi|302191967|gb|ADK99538.1| protein of unknown function DUF150 [Brevundimonas subvibrioides ATCC 15264] Length = 232 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 49/169 (28%), Positives = 82/169 (48%), Gaps = 8/169 (4%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERD-DGNMTLRDCEELSQAISPILD 81 +I +I PV + + V++ L+ LQ+ ER D ++ + +C LS+A+S +LD Sbjct: 45 EILELIDPVADSIGLSIVRVRLMGGTLRRRLQVMAERPSDNDIDVGECARLSRAMSEVLD 104 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + I G Y LEVSSPGIDRP+ R DF + G E +++ G + GT Sbjct: 105 AADPIAGEYLLEVSSPGIDRPLTRLKDFDLFEGLEARLESDRMIEGRKRFKGILAGTDGD 164 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 ++ + + + I FD L+ A+L++ D LL+ + Sbjct: 165 NIAIDLDGEDDTAL------IPFDWLVDAKLVMNDALLKRGAAIRAARG 207 >gi|302670326|ref|YP_003830286.1| hypothetical protein bpr_I0962 [Butyrivibrio proteoclasticus B316] gi|302394799|gb|ADL33704.1| hypothetical protein bpr_I0962 [Butyrivibrio proteoclasticus B316] Length = 154 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 72/150 (48%), Gaps = 6/150 (4%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISP 78 + +++ P+ E R + ++E L+ ++++ DG + + +C ++S A+S Sbjct: 6 DIEKKTEALLTPIAEANGVRVYDVEYVKEAGEWYLRAYIDK-DGGVDINECVDVSHALSD 64 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LDV++ IE Y LEVSSPG+ R + + F G V ++ ++ G + Sbjct: 65 ALDVDDFIEEAYTLEVSSPGLGRQLKKDRHFANSIGQDVELKLFKPRDGVKEFAGTLKSF 124 Query: 139 SETGFFLEKEKRGE----KDMNELQIAISF 164 +T + E K+++ +++A+ F Sbjct: 125 DDTTVTVTINDIDETFIRKEISVIKLALDF 154 >gi|76809648|ref|YP_333312.1| hypothetical protein BURPS1710b_1913 [Burkholderia pseudomallei 1710b] gi|167911168|ref|ZP_02498259.1| hypothetical protein Bpse112_11783 [Burkholderia pseudomallei 112] gi|254259962|ref|ZP_04951016.1| conserved hypothetical protein [Burkholderia pseudomallei 1710a] gi|91208395|sp|Q3JSZ1|RIMP_BURP1 RecName: Full=Ribosome maturation factor rimP gi|76579101|gb|ABA48576.1| conserved hypothetical protein [Burkholderia pseudomallei 1710b] gi|254218651|gb|EET08035.1| conserved hypothetical protein [Burkholderia pseudomallei 1710a] Length = 153 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 73/150 (48%), Gaps = 8/150 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I+ + + + V + ++ +++++ G +T+ DCE++++ + +L VE Sbjct: 2 QLTELIETTVTGLGYELVDLE--RTGRGMVCVYIDQPAG-ITIDDCEKVTRQLQHVLTVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DRP+ + +DF R+ G + ++ G + + Sbjct: 59 NI--DYERLEVSSPGLDRPLKKLADFTRFAGSEAVITLKKPLDGRKTYRGILHAPNGETI 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLI 173 LE E K + + + ARLI Sbjct: 117 GLEFE---RKKGEAAMLDFTLADVDKARLI 143 >gi|289449993|ref|YP_003474584.1| hypothetical protein HMPREF0868_0246 [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184540|gb|ADC90965.1| conserved hypothetical protein [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 155 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 7/156 (4%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQ 74 +A S+ +I +M + V + ++E + L+ ++++ G + L DC E+S+ Sbjct: 1 MAKSKIAAQAESLCAKLINDMGYDLVDVEFVKEGPDRFLRFYIDK-RGGVGLDDCTEVSR 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 +I P++D I+ Y LEVSSPG+DRP+ SD LR G V + + +K +G+ Sbjct: 60 SIDPLIDENLTIDQAYYLEVSSPGLDRPLKTDSDLLRHQGEKVEVTLYQARDGHKKFVGE 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIA-----ISFD 165 I+ + L E G + A I+FD Sbjct: 120 IVAVDDGVLKLAVENMGVLSFTAAERAKVKQVITFD 155 >gi|253681731|ref|ZP_04862528.1| conserved hypothetical protein [Clostridium botulinum D str. 1873] gi|253561443|gb|EES90895.1| conserved hypothetical protein [Clostridium botulinum D str. 1873] Length = 154 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 77/149 (51%), Gaps = 10/149 (6%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPIL 80 I+ +++P++E +++ I + E+N L+I+++ G + L DCE++S+ +S +L Sbjct: 8 IDKINELVRPIVEGLNYELYYIEYVREQNENYLRIYIDSSKG-INLEDCEKVSRKVSDML 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D ++ IE Y LEVSSPGI+R + ++ + + ++ ++ GK++ ++ Sbjct: 67 DEKDPIEDGYYLEVSSPGIERVLHTDEHLHKYINNQIVIKLAKLFEGSREHQGKLLNFND 126 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLS 169 ++K+ I+I D + Sbjct: 127 ESITIQKDNES--------ISIPRDRIKK 147 >gi|315497223|ref|YP_004086027.1| hypothetical protein Astex_0175 [Asticcacaulis excentricus CB 48] gi|315415235|gb|ADU11876.1| protein of unknown function DUF150 [Asticcacaulis excentricus CB 48] Length = 222 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 55/172 (31%), Positives = 89/172 (51%), Gaps = 15/172 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLE----EKNLLLQIFVERD-DGNMTLRDCEELSQAISP 78 + P+ E + V++ L+ LQI ER DG++T+ C LS+A+S Sbjct: 10 KLIEAFDPIAEALGLDIVRVRLMGSNKPGGPRRLQIMAERKTDGDITVNQCARLSRALSA 69 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 L+ + I G Y LEVSSPGIDRP+ R DF ++G E+ + +++ G + G Sbjct: 70 WLEESDPIVGEYILEVSSPGIDRPLTRLKDFDTYSGLEARLELDRLAEGRKRFRGILTG- 128 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELL-----RASLNN 185 +E G ++ + GE+D I FD ++ A+L++ DELL +A+L Sbjct: 129 TEDGEYVAIDLEGEEDTAM----IPFDWIIDAKLVLNDELLKIGAEKAALRR 176 >gi|256830178|ref|YP_003158906.1| hypothetical protein Dbac_2411 [Desulfomicrobium baculatum DSM 4028] gi|256579354|gb|ACU90490.1| protein of unknown function DUF150 [Desulfomicrobium baculatum DSM 4028] Length = 162 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 72/161 (44%), Gaps = 12/161 (7%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLL---EEKNLLLQIFVERDDGNMTLRDCEEL 72 + + ++ P+ E I LL ++ +++++++ G + + +C E+ Sbjct: 1 MDKNEIHARLMEMVTPLCEARDLEVWGIELLFAAGGRHKIVRVYLDSQQG-VGIDECSEV 59 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+ +S LDVE+II G + LEVSSPG++RP L + G V + ++ Sbjct: 60 SRHLSLALDVEDIIPGAFNLEVSSPGLERPFFSTEQMLPYVGQTVRIRLDNPLEGRKNFK 119 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 G+++ F L + +++D + A L+ Sbjct: 120 GRLLSIESPMFTLSDD--------STTFELNWDDVGKANLV 152 >gi|153939522|ref|YP_001391720.1| hypothetical protein CLI_2478 [Clostridium botulinum F str. Langeland] gi|166987487|sp|A7GG10|RIMP_CLOBL RecName: Full=Ribosome maturation factor rimP gi|152935418|gb|ABS40916.1| conserved hypothetical protein [Clostridium botulinum F str. Langeland] gi|295319746|gb|ADG00124.1| conserved hypothetical protein [Clostridium botulinum F str. 230613] Length = 153 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 79/154 (51%), Gaps = 10/154 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 L ++ I+P+ E + + I ++E K L+I+++ ++G ++L CE++S+A+S Sbjct: 5 SLIENLKEQIEPIAEGLDYELYHIEFVKEGKENYLRIYIDSENG-VSLEGCEKVSRAVSE 63 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LD + I+ Y LEVSSPGIDR + ++ G+ + + + K+K G+++ Sbjct: 64 LLDDIDPIQESYYLEVSSPGIDRVLYTDKHLEKYKGYNIVLNLYSAIDKKKKYEGELVDF 123 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +E ++ E+ + I + + L Sbjct: 124 NENEIDIKVEENI--------VTIPREKISKTTL 149 >gi|168187911|ref|ZP_02622546.1| conserved hypothetical protein [Clostridium botulinum C str. Eklund] gi|169294239|gb|EDS76372.1| conserved hypothetical protein [Clostridium botulinum C str. Eklund] Length = 154 Score = 150 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 78/148 (52%), Gaps = 10/148 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILD 81 +I+ +I+P++EE+++ I + E+N L+I+++ G + L DCE++S+ +S ILD Sbjct: 9 DEINKLIKPIVEELNYELYYIEYVVEQNENYLRIYIDSSKG-INLDDCEKVSRRVSEILD 67 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 ++ I Y LEVSSPGI+R + ++ + + ++ ++ GK++ ++ Sbjct: 68 EKDPISDSYYLEVSSPGIERVLYTDEHLHKYTNNQIIIKLGKLFEGSREHQGKLLSFNDD 127 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLS 169 +E+E I+I D + Sbjct: 128 TVVIERENES--------ISIPRDRIKK 147 >gi|74316717|ref|YP_314457.1| hypothetical protein Tbd_0699 [Thiobacillus denitrificans ATCC 25259] gi|74056212|gb|AAZ96652.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC 25259] Length = 161 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 41/149 (27%), Positives = 83/149 (55%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 D+ + ++PV+ + + V + LL+IF+++ G +T+ DC +S ++ + VE Sbjct: 22 DLPARLEPVLAGLGYELVMLE--RAGRGLLRIFIDKP-GGVTIDDCVAVSNHLTHLFTVE 78 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DRP+V+ D+ R+ G V ++ + ++++L G+++G Sbjct: 79 NI--DYDRLEVSSPGLDRPLVKPQDYARFAGEQVTLKLRVPMDNRRRLSGQLLGLESDAV 136 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 L + R ++++ ++ +ARL Sbjct: 137 KLVVDGR--------EMSVDLRNVDAARL 157 >gi|78222793|ref|YP_384540.1| hypothetical protein Gmet_1583 [Geobacter metallireducens GS-15] gi|91208011|sp|Q39VA9|RIMP_GEOMG RecName: Full=Ribosome maturation factor rimP gi|78194048|gb|ABB31815.1| protein of unknown function DUF150 [Geobacter metallireducens GS-15] Length = 159 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 14/163 (8%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQ 74 + ++++ + ++ V I E ++++L++FV++ G +TL DC +S+ Sbjct: 1 MAKDEVVDRVTALAESLLSSQEMELVDIEYKREGRHMVLRLFVDKA-GGITLDDCALVSR 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD-----KQ 129 S ILDVE+ I +Y LEVSSPG++RP+ R+SD+ R+ G +V D ++ Sbjct: 60 EFSEILDVEDFISENYTLEVSSPGLNRPLKRESDYERYRGRLVKVRTYDVVEDEAGNRRK 119 Query: 130 KLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +G + G + L K I + A L Sbjct: 120 TFLGDLEGLAGGVVTL-------KLREGQMARIPLAKIAKANL 155 >gi|237736657|ref|ZP_04567138.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817] gi|229420519|gb|EEO35566.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817] Length = 160 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 45/154 (29%), Positives = 76/154 (49%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I ++ PV+ EM V I +++ ++I+VE +G +TL +C +S I Sbjct: 10 IIEKIEKIVTPVVNEMGLSLVDIEYMQDGGYWYVRIYVENLNGEITLEECAAISGKIDE- 68 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 DV+ +IE + LEVSSPGI+RP+ + DF+R+ G + + DK+ G I Sbjct: 69 -DVDKLIEQRFFLEVSSPGIERPLKKIEDFIRFKGEKIKVSLKHKINDKKSFEGIITECK 127 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + FLE E+ ++ F + A +I Sbjct: 128 DNIIFLEIEEENIVEI-------PFSEVKKANII 154 >gi|160943265|ref|ZP_02090501.1| hypothetical protein FAEPRAM212_00751 [Faecalibacterium prausnitzii M21/2] gi|158445504|gb|EDP22507.1| hypothetical protein FAEPRAM212_00751 [Faecalibacterium prausnitzii M21/2] gi|295105167|emb|CBL02711.1| Uncharacterized protein conserved in bacteria [Faecalibacterium prausnitzii SL3/3] Length = 161 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 38/129 (29%), Positives = 65/129 (50%), Gaps = 3/129 (2%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 A + ++++P +E M R + +E + L+I ++R DG M C E+S A+ PIL Sbjct: 10 AQRVEALVRPTVEGMGLRLWDVVFEKEGPDWYLRILIDR-DGTMDTDTCAEVSHALDPIL 68 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS-SGDKQKLIGKIMGTS 139 D + I+ Y LEV SPG+ R + R + G V +++ + ++L G + G Sbjct: 69 DEADPIDQSYYLEVGSPGLGRKLTRPEHYEALKGQKVRAKLIRPNADGVRELSGILTGRE 128 Query: 140 ETGFFLEKE 148 + LE E Sbjct: 129 GSTVTLETE 137 >gi|73541718|ref|YP_296238.1| hypothetical protein Reut_A2030 [Ralstonia eutropha JMP134] gi|91208397|sp|Q46ZN9|RIMP_RALEJ RecName: Full=Ribosome maturation factor rimP gi|72119131|gb|AAZ61394.1| Protein of unknown function DUF150 [Ralstonia eutropha JMP134] Length = 162 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 78/153 (50%), Gaps = 12/153 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I+ + M + V++ LL++++++ + + + DCE++S+ ++ +L VEN Sbjct: 3 LADLIETTLNGMGYELVELERAPAG--LLRVYIDQPETGIVIEDCEKVSRQLTHVLTVEN 60 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG-- 142 + + RLEVSSPG+DRP+ + +D++R+ G + L ++ G + + Sbjct: 61 V--DYERLEVSSPGLDRPLKKLADYVRFAGAEARVTLRLPVNGQKNFTGILREPTGEAGA 118 Query: 143 --FFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 LE E + + E + + ARL+ Sbjct: 119 EKVGLEFEGKDGPALLEFTV----SDVDKARLV 147 >gi|313896717|ref|ZP_07830265.1| conserved hypothetical protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312974634|gb|EFR40101.1| conserved hypothetical protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 149 Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 75/157 (47%), Gaps = 17/157 (10%) Query: 21 LAGDISSVIQPVIEEM-----SFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 ++ I ++ +++++ V + + E++ L+++++++ G + + DC LS+ Sbjct: 1 MSAKIEERVEEIVQDLLPVQPELELVDVEYVRERDWYLRVYIDKE-GGIDIEDCRTLSER 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 + ILD E+ I Y LEVSSPG+DR + + DF R +G V + K+ L G++ Sbjct: 60 LEEILDREDFIADAYILEVSSPGLDRVLRKARDFEREHGKRVDVALYAPLDGKKNLTGEL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G L+ + + I + + RL Sbjct: 120 TGYDGNVLILDDD-----------VRIPMEQVSQVRL 145 >gi|315648099|ref|ZP_07901200.1| hypothetical protein PVOR_22524 [Paenibacillus vortex V453] gi|315276745|gb|EFU40088.1| hypothetical protein PVOR_22524 [Paenibacillus vortex V453] Length = 153 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + ++QP + E F V + ++E N L++FV++D + + DC +S+ +S Sbjct: 6 IKTTVEEMVQPYLNEHGFELVDVEYVKEGSNWFLRVFVDKDG-GIDIDDCGLISEYLSQK 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + I Y LEVSSPG +RP+ +K D + G V + ++ GK+ Sbjct: 65 LDENDPIPTAYFLEVSSPGAERPLKKKEDVAKSVGKNVFVTVYEPINGLKEFEGKLESFD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ K+ Q I + + SARL + Sbjct: 125 NEELVIQTVKK--------QYVIPYAKVASARLAI 151 >gi|256827234|ref|YP_003151193.1| hypothetical protein Ccur_08070 [Cryptobacterium curtum DSM 15641] gi|256583377|gb|ACU94511.1| uncharacterized conserved protein [Cryptobacterium curtum DSM 15641] Length = 177 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 8/168 (4%) Query: 6 FLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNM 64 F S + G + ++P E V I ++ K +++F++ DG + Sbjct: 9 FFCSGRKRGCQILTGKETRLLEALEPTAREKGIEIVSIEIVGSRKAPTIRVFIDTPDG-V 67 Query: 65 TLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS 124 + I+ I+D + G Y LEVSSPGIDRP+ F R++G + Sbjct: 68 SFDALASAQSWINEIMDAIDPFPGAYMLEVSSPGIDRPLRTPEHFQRFSGQEAQIVLRAP 127 Query: 125 SGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + K G + G ++ L + E +I++D++ A L Sbjct: 128 IDGRSKFTGMLKGFADGAVLLLVDGADEVT------SINYDAIKRAHL 169 >gi|326572880|gb|EGE22865.1| hypothetical protein E9W_08250 [Moraxella catarrhalis CO72] Length = 165 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 18/166 (10%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVE-----RDDGN-MTLRDCEELSQ 74 +++ +I P + I + + LL+I++E R G +T+ DC ++ Sbjct: 7 IAELTELITPAVAACGVDLWGIEFMPQGRKSLLRIYIESLPENRAAGEHVTIEDCSAVNH 66 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD----KQK 130 +S +LDV + I G Y LEVSSPG DRP+ + + G + ++ + G ++K Sbjct: 67 QVSGVLDVHDPIAGEYVLEVSSPGFDRPLFTREQVAAYVGETINLRLIHAIGSGDTKRRK 126 Query: 131 LIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 ++G++ E + E + L+ I+FDS+ A L+ D Sbjct: 127 VVGRLTCVGEDSMTVITEDK-------LEFNIAFDSVDKAHLVYED 165 >gi|297617184|ref|YP_003702343.1| hypothetical protein Slip_0999 [Syntrophothermus lipocalidus DSM 12680] gi|297145021|gb|ADI01778.1| protein of unknown function DUF150 [Syntrophothermus lipocalidus DSM 12680] Length = 153 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 10/155 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 G+ + +I+ +E + V + + +LQ+F+++ G + L C++ S+ I Sbjct: 5 GVVERVEPIIERELEPVGIDVVDVQYKNQAGRWVLQVFIDKP-GGVDLDTCQQASEIIGR 63 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LD E+ I Y LEVSSPG+DR + + DF R+ G V ++ +++ G ++G Sbjct: 64 ALDWEDPIPHSYVLEVSSPGLDRVLKKDKDFERFTGKKVTVKVREPINNQKNFKGLLLGL 123 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + ++ R + + L RL+ Sbjct: 124 RDGKIMVDLGDRI--------LEVPRTEALQVRLV 150 >gi|51246467|ref|YP_066351.1| hypothetical protein DP2615 [Desulfotalea psychrophila LSv54] gi|81641363|sp|Q6AJY2|RIMP_DESPS RecName: Full=Ribosome maturation factor rimP gi|50877504|emb|CAG37344.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54] Length = 151 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 9/154 (5%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 I + V++ M V I E +L++F++ +G +TL C ++S+ + L Sbjct: 6 VEKIEGYVASVLQSMDVELVDIQFRCEGHGWVLRLFID-VEGGVTLDLCAQVSREVGQYL 64 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE++IE Y LEVSSPG++RP+ ++F R+ G ++ ++ G I + Sbjct: 65 DVEDVIEQAYHLEVSSPGVERPLKSLANFERFAGKKARIKLHEPLNGEKTFEGIIGPVED 124 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L + + + L ARL++ Sbjct: 125 GEVSLLVDGKIAVKCGI-------EQLNKARLVL 151 >gi|296113982|ref|YP_003627920.1| hypothetical protein MCR_1770 [Moraxella catarrhalis RH4] gi|295921676|gb|ADG62027.1| conserved hypothetical protein [Moraxella catarrhalis RH4] gi|326559306|gb|EGE09733.1| hypothetical protein E9G_09360 [Moraxella catarrhalis 7169] gi|326564318|gb|EGE14548.1| hypothetical protein E9K_04722 [Moraxella catarrhalis 103P14B1] gi|326568243|gb|EGE18325.1| hypothetical protein E9U_09405 [Moraxella catarrhalis BC8] gi|326569944|gb|EGE19991.1| hypothetical protein E9Q_01306 [Moraxella catarrhalis BC1] gi|326570022|gb|EGE20068.1| hypothetical protein E9S_06263 [Moraxella catarrhalis BC7] gi|326573672|gb|EGE23630.1| hypothetical protein EA1_08342 [Moraxella catarrhalis O35E] gi|326574705|gb|EGE24641.1| hypothetical protein E9Y_05110 [Moraxella catarrhalis 101P30B1] Length = 165 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 18/166 (10%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVE-----RDDGN-MTLRDCEELSQ 74 +++ +I P + I + + LL+I++E R G +T+ DC ++ Sbjct: 7 IAELTELIAPAVAACGVDLWGIEFMPQGRKSLLRIYIESLPENRAAGEHVTIEDCSAVNH 66 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD----KQK 130 +S +LDV + I G Y LEVSSPG DRP+ + + G + ++ + G ++K Sbjct: 67 QVSGVLDVHDPIAGEYVLEVSSPGFDRPLFTREQVAAYVGETINLRLIHAIGSGDTKRRK 126 Query: 131 LIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 ++G++ E + E + L+ I+FDS+ A L+ D Sbjct: 127 VVGRLTCVGEDSMTVITEDK-------LEFNIAFDSVDKAHLVYED 165 >gi|15895074|ref|NP_348423.1| hypothetical protein CA_C1798 [Clostridium acetobutylicum ATCC 824] gi|34223132|sp|Q97I55|RIMP_CLOAB RecName: Full=Ribosome maturation factor rimP gi|15024771|gb|AAK79763.1|AE007689_1 Uncharacterized protein, YhbC family [Clostridium acetobutylicum ATCC 824] gi|325509212|gb|ADZ20848.1| Conserved hypothetical protein [Clostridium acetobutylicum EA 2018] Length = 149 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 73/133 (54%), Gaps = 2/133 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + +I+PV+E + + I +++E L++++++++G ++L DCE++S+AIS + Sbjct: 1 MIDKLIEIIRPVVESLGYEFYHIEIVKEDGERYLRVYIDKENG-ISLDDCEKVSRAISDL 59 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD ++ I Y LEVSSPGI R + + ++ G+ V ++ S GK++ + Sbjct: 60 LDEKDPIPYSYYLEVSSPGIYRTLFTEEHLKKYIGNTVDIKLKSSLEKSTNYSGKLIDVN 119 Query: 140 ETGFFLEKEKRGE 152 E + E Sbjct: 120 EEDIVIVVSDNRE 132 >gi|315924375|ref|ZP_07920597.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC 23263] gi|315622254|gb|EFV02213.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC 23263] Length = 162 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 74/157 (47%), Gaps = 9/157 (5%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQA 75 M I +++P + + + + + K +L ++++R +G ++L DCE++S+ Sbjct: 10 RKMARKDAIYELLKPQVTTLGYELYDVDFEKAGKKRILTVYIDRKEG-ISLEDCEKVSRE 68 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 IS LD + I Y L+VSSPG++R + R + G ++ ++ + +++L + Sbjct: 69 ISAFLDAADPIAETYTLQVSSPGLERKLTRLKHYRAVVGEMIDLKLFEAIDGQKQLCAVL 128 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + ++ + + + I F S+ A L Sbjct: 129 RFVDDEKIVVQ-------EGDAEPLTIPFKSIAKASL 158 >gi|259586206|sp|Q01W33|RIMP_SOLUE RecName: Full=Ribosome maturation factor rimP Length = 153 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 72/154 (46%), Gaps = 9/154 (5%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISP 78 + + V Q V + V++ + + L++I +++ +G +T DC+ +S + Sbjct: 4 AVTSKVEEVAQRVAQSEGLELVEVEVKGGGSARLVRISIDKPEG-VTHADCQTVSDKVGE 62 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 IL+ E+ I GHY LEVSSPG++R +++ D+ R++G + ++ G + G Sbjct: 63 ILEAEDAIPGHYTLEVSSPGVERKLLKPQDYQRFHGQKAKITVREEVDGRRTWEGTLAGF 122 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ LE + FD + A L Sbjct: 123 ADGVISLEV-------APGEIRRLPFDQVKKANL 149 >gi|319947586|ref|ZP_08021816.1| hypothetical protein containing DUF150 [Streptococcus australis ATCC 700641] gi|319746274|gb|EFV98537.1| hypothetical protein containing DUF150 [Streptococcus australis ATCC 700641] Length = 195 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 75/157 (47%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + ++ ++QP I+ F V + + + +L IFV++ G +TL D +L++ ISP+ Sbjct: 43 IVELVTEILQPAIQA-PFELVDVEYGKMGGDYVLSIFVDKP-GGITLNDTADLTEVISPL 100 Query: 80 LDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LEV+SPG++RP+ K + G + + + ++ + G ++ Sbjct: 101 LDQIQPDPFPEQYFLEVTSPGLERPLKTKDAVEKSLGQYIHVSLYKAVDKQKVIEGTLVK 160 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + +E + K I I + + ARL V Sbjct: 161 FEDDQLTMEYMDKTRKK----TIEIPYSLVSKARLAV 193 >gi|303256974|ref|ZP_07342988.1| DUF150-containing protein [Burkholderiales bacterium 1_1_47] gi|330999162|ref|ZP_08322881.1| hypothetical protein HMPREF9439_00503 [Parasutterella excrementihominis YIT 11859] gi|302860465|gb|EFL83542.1| DUF150-containing protein [Burkholderiales bacterium 1_1_47] gi|329575362|gb|EGG56906.1| hypothetical protein HMPREF9439_00503 [Parasutterella excrementihominis YIT 11859] Length = 186 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 81/182 (44%), Gaps = 32/182 (17%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 M ++ + +I +E + + V + L L+++ +++ DG +TL DCE++S ++ Sbjct: 1 MAVSTQLFEMIDATVEGLGYELVDVEKLPRG--LIRVTIDK-DGGITLDDCEKVSNQLNN 57 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS-------GDKQKL 131 + VEN+ + RLEVSSPG+DRP+ R DF+++ G V E+ +++L Sbjct: 58 AMTVENV--DYDRLEVSSPGVDRPLKRPRDFVKFVGQNVHVELFAPITGEGLPENGRRRL 115 Query: 132 IGKIMGTSETG----FFLEKEK----------------RGEKDMNELQIAISFDSLLSAR 171 G + + + + + D + + F+ + A Sbjct: 116 DGTLDAVEGDENNPSITMTLSENRVARTPAEKQRAAKTKAKSDTPAVTVTFPFNDVERAN 175 Query: 172 LI 173 L+ Sbjct: 176 LV 177 >gi|226940849|ref|YP_002795923.1| hypothetical protein LHK_01930 [Laribacter hongkongensis HLHK9] gi|254800662|sp|C1D8X4|RIMP_LARHH RecName: Full=Ribosome maturation factor rimP gi|226715776|gb|ACO74914.1| Uncharacterized protein conserved in bacteria [Laribacter hongkongensis HLHK9] Length = 141 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 43/149 (28%), Positives = 82/149 (55%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 D+ ++++ + + + V L L+++F++ G + L DC ++S ++ + VE Sbjct: 2 DVRTLLETTLSGLGYELVDFEL--GHGGLMRVFIDAPAG-IALDDCVKVSNHLTRLFTVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DRP+ R++D+ R+ G V + L G+++K G ++G ++ Sbjct: 59 NI--DYDRLEVSSPGLDRPLTREADYARFAGERVRIKTRLPIGERKKFAGTLVGLADGQV 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 L D++ ++AI S+ ARL Sbjct: 117 EL--------DIDGERVAIPLASIDKARL 137 >gi|82702987|ref|YP_412553.1| hypothetical protein Nmul_A1866 [Nitrosospira multiformis ATCC 25196] gi|91208392|sp|Q2Y7W0|RIMP_NITMU RecName: Full=Ribosome maturation factor rimP gi|82411052|gb|ABB75161.1| Protein of unknown function DUF150 [Nitrosospira multiformis ATCC 25196] Length = 142 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 38/150 (25%), Positives = 76/150 (50%), Gaps = 12/150 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 D+ +++P + + + V + LL+IF+++ G + + DC +S +S L VE Sbjct: 2 DLYELLEPTLAGLGYELVDLE-RSPGGKLLRIFIDKP-GGVNVDDCVTVSNHLSRFLAVE 59 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 N+ + RLEVSSPG+DRP+ + +DF+R+ G V + ++ ++ +G + + Sbjct: 60 NV--DYDRLEVSSPGLDRPLKKTADFIRFAGESVKLRLRVALQGQRNFVGILREVKDGIL 117 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLI 173 LE + + + + +L RL+ Sbjct: 118 KLEVDGK--------MLDLELTNLEKVRLV 139 >gi|326565083|gb|EGE15276.1| hypothetical protein E9M_00058 [Moraxella catarrhalis 46P47B1] gi|326567251|gb|EGE17371.1| hypothetical protein E9O_01044 [Moraxella catarrhalis 12P80B1] Length = 165 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 43/166 (25%), Positives = 80/166 (48%), Gaps = 18/166 (10%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVE-----RDDGN-MTLRDCEELSQ 74 +++ +I P ++ I + + LL+I++E R G +T+ DC ++ Sbjct: 7 IAELTELIAPAVDACGVDLWGIEFMPQGRKSLLRIYIESLPENRAAGEHVTIEDCSAVNH 66 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD----KQK 130 +S +LDV + I G Y LEVSSPG DRP+ + + G + ++ + G ++K Sbjct: 67 QVSGVLDVHDPIAGEYVLEVSSPGFDRPLFTREQVAAYVGETINLRLIHAIGSGDTKRRK 126 Query: 131 LIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 ++G++ E + E + L+ I+FDS+ A L+ D Sbjct: 127 VVGRLTCVGEDSMTVITEDK-------LEFNIAFDSVDKAHLVYED 165 >gi|307243344|ref|ZP_07525508.1| conserved hypothetical protein [Peptostreptococcus stomatis DSM 17678] gi|306493291|gb|EFM65280.1| conserved hypothetical protein [Peptostreptococcus stomatis DSM 17678] Length = 155 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 42/145 (28%), Positives = 78/145 (53%), Gaps = 4/145 (2%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISP 78 +A + IQP +E + V + ++E L++ ++ ++G + L +CE++S+ I+P Sbjct: 4 NIAQRVEEKIQPSVEGFGYELVDVEYVKEAGVYYLRVIIDHENG-IGLDECEKVSREINP 62 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD--KQKLIGKIM 136 ILD E+ IE +Y LEV SPGIDR + R +F ++ G V ++ + D ++ ++ Sbjct: 63 ILDEEDYIEDNYFLEVCSPGIDRVLKRDKEFSKYAGKTVEVKLYKNDQDLKTKQFEAELR 122 Query: 137 GTSETGFFLEKEKRGEKDMNELQIA 161 G + G + EK + +IA Sbjct: 123 GLDQDGMVVVSIGDTEKKFDRKEIA 147 >gi|169334800|ref|ZP_02861993.1| hypothetical protein ANASTE_01206 [Anaerofustis stercorihominis DSM 17244] gi|169257538|gb|EDS71504.1| hypothetical protein ANASTE_01206 [Anaerofustis stercorihominis DSM 17244] Length = 172 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 76/153 (49%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + ++ + ++++ + I +E N +L++++ER +G ++L + +++ +S + Sbjct: 22 VIDRVEALSEDILKDNGCELIDIEFKKEGNNKVLRLYIERIEGKVSLDEISTVNRLLSDL 81 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD E+ IE Y LEVSSPG++R + ++ DF+++ G V ++ K++ G + G Sbjct: 82 LDEEDFIEEEYILEVSSPGVNRVIKKEKDFIKFKGSKVDVKLYKPLNGKKQFTGILEGYE 141 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ + + I + L Sbjct: 142 NENVLIDLDGE--------HLVIPHKDISKVNL 166 >gi|28210958|ref|NP_781902.1| hypothetical protein CTC01272 [Clostridium tetani E88] gi|34222839|sp|Q895K1|RIMP_CLOTE RecName: Full=Ribosome maturation factor rimP gi|28203397|gb|AAO35839.1| protein associated with NUS operon [Clostridium tetani E88] Length = 153 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 68/153 (44%), Gaps = 10/153 (6%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++ + +P++ ++ + + + E K L+I+++ + G + L DCE++S+A+S +L Sbjct: 7 IDNLKELTEPIVNDLDYELYYLEFVNENKENYLRIYIDSESG-IGLEDCEKVSRAVSAML 65 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D ++ I+ Y LEVSSPG++R + G + +K GK+ Sbjct: 66 DEKDPIDTSYYLEVSSPGLERQLYDDKHIEDNIGKTACVRLESLFNGGRKFEGKLKSFDN 125 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 LE +N I + LI Sbjct: 126 ENLTLE--------INAEDFKIPRKKIKRINLI 150 >gi|254412382|ref|ZP_05026156.1| conserved hypothetical protein [Microcoleus chthonoplastes PCC 7420] gi|196180692|gb|EDX75682.1| conserved hypothetical protein [Microcoleus chthonoplastes PCC 7420] Length = 153 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 9/150 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 L + + PV E++ V + +L++ + DG+ L DCE +S+A+ Sbjct: 5 LIPQLIDLATPVAEKLGLEFVGAVFHTNRRPPVLRVDIRNRDGDTGLDDCERMSRALEAE 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD ++I Y LE+SSPGI + + DF+ + G V ++ GK++ Sbjct: 65 LDAVDLIPDAYVLEISSPGISQELTTDRDFIAFKGFSVVVNTAEPDQGHKEWRGKLIRRD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLS 169 +T ++ ++ R IAI D + Sbjct: 125 DTRVYINQKGRA--------IAIPRDQVTK 146 >gi|187923622|ref|YP_001895264.1| hypothetical protein Bphyt_1630 [Burkholderia phytofirmans PsJN] gi|226736380|sp|B2T379|RIMP_BURPP RecName: Full=Ribosome maturation factor rimP gi|187714816|gb|ACD16040.1| protein of unknown function DUF150 [Burkholderia phytofirmans PsJN] Length = 152 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 38/150 (25%), Positives = 74/150 (49%), Gaps = 9/150 (6%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I+ + + + V + +L I++++ G + + DCE++++ + +L VE Sbjct: 2 QLTELIETTVVGLGYELVDLE--RTGRGMLCIYIDQPAG-IAIEDCEKVTRQLQHVLTVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DRP+ + +DF R+ G V + ++ G + Sbjct: 59 NI--DYERLEVSSPGLDRPLKKLADFERFAGSEVVITLKKPLDGRKSYRGILHAPQGETI 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLI 173 LE E + M + +A + ARL+ Sbjct: 117 GLEFEGKEGAAMLDFTLA----DIDKARLV 142 >gi|148380377|ref|YP_001254918.1| hypothetical protein CBO2421 [Clostridium botulinum A str. ATCC 3502] gi|153933725|ref|YP_001384597.1| hypothetical protein CLB_2286 [Clostridium botulinum A str. ATCC 19397] gi|153935745|ref|YP_001388113.1| hypothetical protein CLC_2269 [Clostridium botulinum A str. Hall] gi|166987426|sp|A7FVZ7|RIMP_CLOB1 RecName: Full=Ribosome maturation factor rimP gi|166987470|sp|A5I4J7|RIMP_CLOBH RecName: Full=Ribosome maturation factor rimP gi|148289861|emb|CAL83969.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 3502] gi|152929769|gb|ABS35269.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 19397] gi|152931659|gb|ABS37158.1| conserved hypothetical protein [Clostridium botulinum A str. Hall] Length = 153 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 77/154 (50%), Gaps = 10/154 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 L ++ I+P+ E + + I ++E K L+I+++ ++G ++L CE++S+AIS Sbjct: 5 SLIENLKEQIEPIAEGLDYELYHIEFVKEGKENYLRIYIDSENG-VSLEGCEKVSRAISE 63 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LD + I+ Y LEVSSPGIDR + ++ + + + K+K G+++ Sbjct: 64 LLDDIDPIQESYYLEVSSPGIDRVLYTDKHLEKYKSYNIVLNLYSPIDKKKKYEGELVDF 123 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +E ++ E+ + I + + L Sbjct: 124 NENEIDIKVEENI--------VTIPREKISKTTL 149 >gi|257465969|ref|ZP_05630280.1| putative cytoplasmic protein [Fusobacterium gonidiaformans ATCC 25563] gi|315917125|ref|ZP_07913365.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC 25563] gi|313691000|gb|EFS27835.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC 25563] Length = 153 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 76/155 (49%), Gaps = 11/155 (7%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISP 78 + I ++ P EE+ V + +++ ++++VE+ +G++ L DC LS I Sbjct: 3 SVVQKIEKIVIPAAEELGLSLVDVEYMQDGGYWYVRVYVEKLEGDVNLEDCASLSGKIED 62 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +D +I+ + LEVSSPGI+RP+ ++SDF+R+ G + + +K+ + G + Sbjct: 63 AVDQ--LIDKKFFLEVSSPGIERPLKKESDFIRFTGEKIFVALKHKLNEKRNIEGILRAY 120 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 LE + ++ I F + + L+ Sbjct: 121 ENQTLLLEVDGE--------ELQIPFSEVKKSHLV 147 >gi|226949775|ref|YP_002804866.1| hypothetical protein CLM_2715 [Clostridium botulinum A2 str. Kyoto] gi|254801446|sp|C1FS63|RIMP_CLOBJ RecName: Full=Ribosome maturation factor rimP gi|226844311|gb|ACO86977.1| conserved hypothetical protein [Clostridium botulinum A2 str. Kyoto] Length = 153 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 77/154 (50%), Gaps = 10/154 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 L ++ I+P+ E + + I ++E K L+I+++ ++G ++L CE++S+AIS Sbjct: 5 SLIENLKKQIEPIAEGLDYELYHIEFVKEGKENYLRIYIDSENG-VSLEGCEKVSRAISE 63 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LD + I+ Y LEVSSPGIDR + ++ + + + K+K G+++ Sbjct: 64 LLDDIDPIQESYYLEVSSPGIDRVLYTDKHLEKYKSYNIVLNLYSPIDKKKKYEGELVDF 123 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +E ++ E+ + I + + L Sbjct: 124 NENEIDIKVEENI--------VTIPREKISKTTL 149 >gi|256846937|ref|ZP_05552391.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2] gi|294784278|ref|ZP_06749573.1| conserved hypothetical protein [Fusobacterium sp. 3_1_27] gi|256717735|gb|EEU31294.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2] gi|294488144|gb|EFG35495.1| conserved hypothetical protein [Fusobacterium sp. 3_1_27] Length = 156 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 78/156 (50%), Gaps = 11/156 (7%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAI 76 + + I+ ++ P IEEM+ V + +++ ++IF+E +G++ + DC +LS I Sbjct: 4 NNQIVEKITKIVNPFIEEMNLSLVDVEYVQDGGYWYIRIFIENLNGDLNIEDCSKLSSKI 63 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 VE +IE + LEVSSPG++RP+ + D++R+ G + + DK++ I Sbjct: 64 EDK--VEGLIEHKFFLEVSSPGLERPLKKIEDYVRFTGEKITLHLKHKLDDKKQFKAIIK 121 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + +K+ +I I F+ + A + Sbjct: 122 EVNGDNIIFLIDKK--------EIEIKFNEIRKANI 149 >gi|327398876|ref|YP_004339745.1| Ribosome maturation factor rimP [Hippea maritima DSM 10411] gi|327181505|gb|AEA33686.1| Ribosome maturation factor rimP [Hippea maritima DSM 10411] Length = 140 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 16/152 (10%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L+ ++ I V+E + + I L ++K + I++++ G +++ DCE S+ IS +L Sbjct: 2 LSEELKEDIFVVVESLGYSVYDIELTQKK---ITIYIDKP-GGVSIDDCELASRNISALL 57 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DV++ G Y LEVSSPGI+R + K F+ G + + G + ++ Sbjct: 58 DVKDPFSGSYTLEVSSPGINRKLKTKEHFMAAIGKKCVVHTHFPVDNSKVFKGILTECND 117 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +E + I FD++ AR+ Sbjct: 118 NEIVIEG------------VRIEFDNIKKARI 137 >gi|256028608|ref|ZP_05442442.1| putative cytoplasmic protein [Fusobacterium sp. D11] gi|289766526|ref|ZP_06525904.1| conserved hypothetical protein [Fusobacterium sp. D11] gi|289718081|gb|EFD82093.1| conserved hypothetical protein [Fusobacterium sp. D11] Length = 156 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 80/157 (50%), Gaps = 11/157 (7%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQA 75 G+ + I+ ++ P +EEM+ V + +++ ++IF+E +G++++ DC +LS Sbjct: 3 GNNQIVEKITEIVNPFVEEMNLSLVDVEYVQDGAYWYIRIFIENLNGDLSIEDCSKLSSK 62 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I + E +IE + LEVSSPG++RP+ + D++R+ G + + DK++ I Sbjct: 63 IEDKI--EKLIEHKFFLEVSSPGLERPLKKIEDYIRFTGEKITLHLKHKLDDKKQFKAII 120 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + +K+ +I I F+ + A + Sbjct: 121 KEVNGNNIIFLIDKK--------EIEIKFNEIRKANI 149 >gi|187778985|ref|ZP_02995458.1| hypothetical protein CLOSPO_02580 [Clostridium sporogenes ATCC 15579] gi|187772610|gb|EDU36412.1| hypothetical protein CLOSPO_02580 [Clostridium sporogenes ATCC 15579] Length = 153 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 79/154 (51%), Gaps = 10/154 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 L ++ I+P+++ +S+ I ++E K L+I+++ + G ++L CE++S+A+S Sbjct: 5 SLIENLKKQIEPIVKGLSYDLYHIEFVKEGKENYLRIYIDSESG-VSLEGCEKVSRAVSE 63 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LD + I+ Y LEVSSPGIDR + ++ G+ + + K+K G+++ Sbjct: 64 LLDDIDPIQESYYLEVSSPGIDRVLYTDKHLEKYKGYNIVLNLYSPIDKKKKYEGELVDF 123 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +E ++ E+ + I + + L Sbjct: 124 NENEINIKVEENI--------VIIPREKISKTTL 149 >gi|323697470|ref|ZP_08109382.1| protein of unknown function DUF150 [Desulfovibrio sp. ND132] gi|323457402|gb|EGB13267.1| protein of unknown function DUF150 [Desulfovibrio desulfuricans ND132] Length = 152 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 71/150 (47%), Gaps = 10/150 (6%) Query: 25 ISSVIQPVIEEMSFRSVQI-SLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 +S +I+P +E + + + S K +++I+++ G + + C E+S+ + +L+VE Sbjct: 9 LSDMIRPEVENLGYVFWGLASPSSGKKRVVRIYIDAP-GGVNIDQCAEVSRQVGLMLEVE 67 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 ++I G + LEVSSPG++RP + + G V + ++K G++ G Sbjct: 68 DVIPGAFVLEVSSPGLERPFFAPAQLADYVGRKVDVLLFEPLDGRRKFKGELTGVEGDTV 127 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + + + ++ L+ Sbjct: 128 TVNVDDQ--------TMNFDWTAIKKITLV 149 >gi|315222141|ref|ZP_07864050.1| UPF0090 protein [Streptococcus anginosus F0211] gi|315188767|gb|EFU22473.1| UPF0090 protein [Streptococcus anginosus F0211] Length = 162 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 73/157 (46%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + V++PVI+E + V I + + +L IFV++ G +T+ D +L+ ISP+ Sbjct: 10 IVELVKEVVEPVIQE-PYELVNIEYGKMGSDHVLSIFVDKP-GGITVNDTADLTDIISPL 67 Query: 80 LDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LEV+SPG++RP+ K G + + + + G ++ Sbjct: 68 LDTIKPDPFPEQYFLEVTSPGLERPLKTKEQLAAAVGEYIHVSLYQALDKSKVFEGTLLS 127 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + K + + I + + ARL V Sbjct: 128 FEEDHLTMEYMDKTRKKV----VQIPYQLVSKARLAV 160 >gi|19705319|ref|NP_602814.1| putative cytoplasmic protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|34223125|sp|Q8RHJ4|RIMP_FUSNN RecName: Full=Ribosome maturation factor rimP gi|19713290|gb|AAL94113.1| Hypothetical cytosolic protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 156 Score = 147 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 77/156 (49%), Gaps = 11/156 (7%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAI 76 + + I+ ++ P IEEM+ V + +++ ++IF+E +G++ + DC +LS I Sbjct: 4 NNQIVEKITRIVNPFIEEMNLSLVDVEYVQDGGYWYVRIFIENLNGDLNIEDCSKLSSKI 63 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 VE +IE + LEVSSPG++RP+ + D+ R+ G + + DK++ I Sbjct: 64 EDK--VEELIEHKFFLEVSSPGLERPLKKLEDYTRFIGEKITLHLKHKLDDKKQFKTIIK 121 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + +K+ ++ I F+ + A + Sbjct: 122 EVNGDNIIFLMDKK--------EVEIKFNEIRKANI 149 >gi|146319504|ref|YP_001199216.1| hypothetical protein SSU05_1850 [Streptococcus suis 05ZYH33] gi|259645119|sp|A4VXH7|RIMP_STRSY RecName: Full=Ribosome maturation factor rimP gi|145690310|gb|ABP90816.1| unknown protein [Streptococcus suis 05ZYH33] Length = 158 Score = 147 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 76/158 (48%), Gaps = 9/158 (5%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + +++ I P I+ + V + + + +L IFV+++ G ++L+D +LS+ ISP Sbjct: 5 SIIELVTAAITPAIQ-TPYELVDVEYGKMGGDYVLSIFVDKE-GGISLQDTADLSEKISP 62 Query: 79 ILDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 ILD + Y LEV+SPG++RP+ + G + ++ + + G ++ Sbjct: 63 ILDTIKPDPFPDQYMLEVTSPGLERPLKTADAVEKAVGKYIHVKLYQAIDKLKVFEGTLL 122 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 T +E + K ++ I + ++ ARL V Sbjct: 123 SFDGTDLIMEYMDKTRKK----EVTIPYQTVAKARLAV 156 >gi|237743253|ref|ZP_04573734.1| conserved hypothetical protein [Fusobacterium sp. 7_1] gi|229433032|gb|EEO43244.1| conserved hypothetical protein [Fusobacterium sp. 7_1] Length = 156 Score = 147 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 79/157 (50%), Gaps = 11/157 (7%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQA 75 G+ + I+ ++ P +EEM+ V + +++ ++IF+E +G++++ DC +LS Sbjct: 3 GNNQIVEKITEIVNPFVEEMNLSLVDVEYVQDGAYWYIRIFIENLNGDLSIEDCSKLSSK 62 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I + E +IE + LEVSSPG++RP+ + D++R+ G + + DK++ I Sbjct: 63 IEDKI--EKLIEHKFFLEVSSPGLERPLKKIEDYIRFTGEKITLHLKHKLDDKKQFKAII 120 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + +I I F+ + A + Sbjct: 121 KEVNGNNIIFLIDNK--------EIEIKFNEIRKANI 149 >gi|291541941|emb|CBL15051.1| Uncharacterized protein conserved in bacteria [Ruminococcus bromii L2-63] Length = 159 Score = 147 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 67/128 (52%), Gaps = 3/128 (2%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + QP++E + ++E + L++++++ +G + + DCE +S+AI+ L Sbjct: 10 VSKVWELCQPIVEGFGLSLWDVRYVKEGADRFLRVYIDKPEG-IDINDCENVSRAINGPL 68 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD-KQKLIGKIMGTS 139 D + IE Y LEV SPGI+R ++R F+++ G + +++ ++ G + S Sbjct: 69 DELDPIEEAYCLEVCSPGIERELIRDEHFMQFIGADIMVKMLRPIDGIGREFKGVLKDYS 128 Query: 140 ETGFFLEK 147 + +E Sbjct: 129 DGKVTIED 136 >gi|146321699|ref|YP_001201410.1| hypothetical protein SSU98_1852 [Streptococcus suis 98HAH33] gi|259586202|sp|A4W3S1|RIMP_STRS2 RecName: Full=Ribosome maturation factor rimP gi|145692505|gb|ABP93010.1| unknown protein [Streptococcus suis 98HAH33] gi|292559122|gb|ADE32123.1| hypothetical protein SSGZ1_1667 [Streptococcus suis GZ1] Length = 158 Score = 147 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 76/158 (48%), Gaps = 9/158 (5%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + +++ I P I+ + V + + + +L IFV+++ G ++L+D +LS+ ISP Sbjct: 5 SIIELVTAAITPAIQ-TPYELVDVEYGKMGGDYVLSIFVDKE-GGISLQDTADLSEKISP 62 Query: 79 ILDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 ILD + Y LEV+SPG++RP+ + G + ++ + + G ++ Sbjct: 63 ILDTIKPDPFPDQYMLEVTSPGLERPLKTADAVEKAVGKYIHVKLYQAIDKIKVFEGTLL 122 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 T +E + K ++ I + ++ ARL V Sbjct: 123 SFDGTDLIMEYMDKTRKK----EVTIPYQTVAKARLAV 156 >gi|71276364|ref|ZP_00652641.1| Protein of unknown function DUF150 [Xylella fastidiosa Dixon] gi|71898653|ref|ZP_00680823.1| Protein of unknown function DUF150 [Xylella fastidiosa Ann-1] gi|170729431|ref|YP_001774864.1| hypothetical protein Xfasm12_0201 [Xylella fastidiosa M12] gi|71162826|gb|EAO12551.1| Protein of unknown function DUF150 [Xylella fastidiosa Dixon] gi|71731600|gb|EAO33661.1| Protein of unknown function DUF150 [Xylella fastidiosa Ann-1] gi|167964224|gb|ACA11234.1| conserved hypothetical protein [Xylella fastidiosa M12] Length = 215 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 85/156 (54%), Gaps = 12/156 (7%) Query: 24 DISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVE-----RDDGNMTLRDCEELSQAIS 77 +I +++ P +E + F + + +L+++++ + + +++ DCE +S+ +S Sbjct: 23 EIVNLLAPKVEMLGFDLLGAEYVLVPSGAILRLYIDIPFAMQPECMVSIDDCERVSREVS 82 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD+E I G+Y LEVSSPG+DR + F R + H+V + L ++L GKI+ Sbjct: 83 AYLDLEEPISGNYTLEVSSPGLDRRLFTLEQFARHHNHLVKVGLKLQQHGSRRLQGKIVR 142 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + G F+ +N +++A+ F+++ AR++ Sbjct: 143 VEQVGGFV------VLLVNGVELAVDFNNIDKARIV 172 >gi|85710532|ref|ZP_01041596.1| hypothetical protein NAP1_08982 [Erythrobacter sp. NAP1] gi|85687710|gb|EAQ27715.1| hypothetical protein NAP1_08982 [Erythrobacter sp. NAP1] Length = 188 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 17/174 (9%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLL----EEKNLLLQIFVERD-DGNMTLRDCEELS 73 M ++ +I+P E + F V++ ++ + LQI E G + + C ELS Sbjct: 1 MTDIARLTDLIEPEAEALGFELVRVKMMPSEAGDGGEALQIMAEDPATGQLVIEQCAELS 60 Query: 74 QAISPILDV-----ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 + +S ++D E +IEG Y LEVSSPGIDRP+ R+ DF W GH + + Sbjct: 61 RRVSDMIDAREEAGEVLIEGAYHLEVSSPGIDRPLTREKDFANWAGHEARIVMTKGFDGQ 120 Query: 129 QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS 182 + G++ G + K GE + D + SA+L +TD+L+ A+ Sbjct: 121 RVYKGELGGVENGMVTITDAKAGEAK-------LPQDQIHSAKLELTDKLIAAT 167 >gi|257094535|ref|YP_003168176.1| hypothetical protein CAP2UW1_2969 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047059|gb|ACV36247.1| protein of unknown function DUF150 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 155 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 82/163 (50%), Gaps = 13/163 (7%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDD--GNMTLRDCEELSQAISPILD 81 D+ V++ + + ++ V + + +L++F+++ + + DC +S ++ +L Sbjct: 2 DLHEVLEVTVTGLGYQLVDVE-RSPRGRVLRVFIDKPAKPRGVDVEDCALVSNQLTRVLL 60 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VENI + RLEVSSPG+DRP+ ++ DF R+ G V ++ L ++ G + G + Sbjct: 61 VENI--DYERLEVSSPGLDRPLTKEVDFERFAGSEVTIKLRLPLNGRRNFAGVLHGAQDG 118 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLN 184 ++ ++ +I ++ ARL+ +L ++S Sbjct: 119 KVRVQ--------IDSGEIEFDLANIDKARLVPDFDLKKSSNR 153 >gi|186476489|ref|YP_001857959.1| hypothetical protein Bphy_1731 [Burkholderia phymatum STM815] gi|226736435|sp|B2JKT6|RIMP_BURP8 RecName: Full=Ribosome maturation factor rimP gi|184192948|gb|ACC70913.1| protein of unknown function DUF150 [Burkholderia phymatum STM815] Length = 152 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 37/150 (24%), Positives = 73/150 (48%), Gaps = 9/150 (6%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I+ + + + V + +L I++++ G + + DCE++++ + +L VE Sbjct: 2 QLTELIETTVVGLGYELVDLE--RTGRGMLCIYIDQPAG-IAIEDCEKVTRQLQHVLTVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DRP+ + +DF R+ G + ++ G + Sbjct: 59 NI--DYERLEVSSPGLDRPLKKLADFERFAGSEAVITLKKPLDGRKSYRGILHAPEGETI 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLI 173 LE E + M + +A + ARL+ Sbjct: 117 GLEFEGKEGAAMLDFTLA----DIDKARLV 142 >gi|83748668|ref|ZP_00945685.1| Hypothetical cytosolic protein [Ralstonia solanacearum UW551] gi|207743365|ref|YP_002259757.1| hypothetical protein RSIPO_01539 [Ralstonia solanacearum IPO1609] gi|83724630|gb|EAP71791.1| Hypothetical cytosolic protein [Ralstonia solanacearum UW551] gi|206594762|emb|CAQ61689.1| conserved hypothetical protein [Ralstonia solanacearum IPO1609] Length = 162 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 75/153 (49%), Gaps = 12/153 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I+ + M + V++ LL++++++ + + + DCE++S ++ + +VEN Sbjct: 3 LTDLIEKTLTAMGYELVEVERAPAG--LLRVYIDQAETGIVIEDCEKVSHQLTRVFEVEN 60 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE---- 140 + + RLEVSSPG+DRP+ +DF R+ G V + L ++ G + + Sbjct: 61 V--HYERLEVSSPGLDRPLRTLTDFTRFAGQEVKVTLRLPVDGQKNFTGIVQAPTGEPGQ 118 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 LE E + + + L ARL+ Sbjct: 119 ERIGLEFEGKD----GPALLEFTLSELDRARLV 147 >gi|302878487|ref|YP_003847051.1| hypothetical protein Galf_1259 [Gallionella capsiferriformans ES-2] gi|302581276|gb|ADL55287.1| protein of unknown function DUF150 [Gallionella capsiferriformans ES-2] Length = 141 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 40/152 (26%), Positives = 80/152 (52%), Gaps = 13/152 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 D+ +I+ + + + V + LL++F+++ DG + + DC+ +S ++ + VE Sbjct: 2 DVVKLIEVTVSGLGYELVDVE--RAGRGLLRVFIDKPDG-IAVEDCQVVSNQLTRLFTVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DR + +++DF+R+ G ++ + ++ IG I ++ Sbjct: 59 NI--DYDRLEVSSPGLDRALKKEADFIRFVGQKAQIKLRMPIAARKNFIGVIGEINDGVL 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 L+ E + +AI ++ ARL+ T Sbjct: 117 QLDVEG--------VPVAIELTNVDKARLVPT 140 >gi|170077375|ref|YP_001734013.1| hypothetical protein SYNPCC7002_A0752 [Synechococcus sp. PCC 7002] gi|169885044|gb|ACA98757.1| conserved hypothetical protein [Synechococcus sp. PCC 7002] Length = 166 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 L I + +P+ E+ V + K +L+I V + L DCE S+ + P Sbjct: 18 LIPRIVTCAEPIAAELGLEVVDVVFQTNKKPPVLRIDVRNLSQDTGLEDCERFSRLLDPQ 77 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 L+ + II G Y LEVSSPG DR + +F+ + G V + D+++ G + Sbjct: 78 LEAQEIIPGAYVLEVSSPGTDRNLTTDREFIAFRGFPVRVKTYAPYKDQKEWCGTLRERD 137 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 E L + + IAI + + +L Sbjct: 138 EAAIHLNLKGKA--------IAIPRELVAKVQL 162 >gi|262377016|ref|ZP_06070242.1| UPF0090 protein [Acinetobacter lwoffii SH145] gi|262308054|gb|EEY89191.1| UPF0090 protein [Acinetobacter lwoffii SH145] Length = 174 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 41/175 (23%), Positives = 76/175 (43%), Gaps = 23/175 (13%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERD-----------DG----- 62 + +I P +E + I L + K LL+I++++ DG Sbjct: 5 NKTQALQDLIAPAVEACNVNLWGIEFLPQGKCSLLRIYIDKPVDESVAPAINEDGEEEQG 64 Query: 63 -NMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 + ++DC ++Q + +LDV + I G Y LEVSSPG DRP + + GH VA + Sbjct: 65 RGIGVQDCVRVTQQVGAMLDVHDPISGEYSLEVSSPGWDRPFFQLEQMSGYIGHTVALRL 124 Query: 122 VLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 + + +++K K++ ++ E + + I ++ A L+ D Sbjct: 125 ISAVDNRRKFQAKLVAVDLENEMIQVEVEK-----QQVLEIDSHNIDKANLVFQD 174 >gi|237742965|ref|ZP_04573446.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13] gi|229430613|gb|EEO40825.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13] Length = 156 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 77/156 (49%), Gaps = 11/156 (7%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAI 76 + + I+ ++ P IEEM+ V + +++ ++IF+E +G++ + DC +LS I Sbjct: 4 NNQIVEKITKIVNPFIEEMNLSLVDVEYVQDGGYWYIRIFIENLNGDLNIEDCSKLSSKI 63 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 VE +IE + LEVSSPG++RP+ + D++R+ G + + K++ I Sbjct: 64 EDK--VEGLIEHKFFLEVSSPGLERPLKKIEDYVRFKGEKITLHLKHKLNYKKQFKAVIK 121 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + +K+ +I I F+ + A + Sbjct: 122 EVNGDNIIFLIDKK--------EIEIKFNEIRKANI 149 >gi|71901434|ref|ZP_00683524.1| Protein of unknown function DUF150 [Xylella fastidiosa Ann-1] gi|71728805|gb|EAO30946.1| Protein of unknown function DUF150 [Xylella fastidiosa Ann-1] Length = 216 Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 85/156 (54%), Gaps = 12/156 (7%) Query: 24 DISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVE-----RDDGNMTLRDCEELSQAIS 77 +I +++ P +E + F + L +L+++++ + + +++ DCE +S+ +S Sbjct: 24 EIVNLLAPKVEMLGFDLLGAEYLLVPSGAILRLYIDIPFAMQPECMVSIDDCERVSREVS 83 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD+E I G+Y LEVSSPG+DR + F R + H+V + L ++L GKI+ Sbjct: 84 AYLDLEEPISGNYTLEVSSPGLDRRLFTLEQFARHHNHLVKVGLKLQQHGSRRLQGKIVR 143 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + G F+ +N +++A+ F+++ AR++ Sbjct: 144 VEQVGGFV------VLLVNGVELAVDFNNIDKARIV 173 >gi|188577682|ref|YP_001914611.1| hypothetical protein PXO_01301 [Xanthomonas oryzae pv. oryzae PXO99A] gi|188522134|gb|ACD60079.1| YhbC family protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 176 Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 12/140 (8%) Query: 39 RSVQISLLEE-KNLLLQIFVE-----RDDGNMTLRDCEELSQAISPILDVENIIEGHYRL 92 + + L L+++++ + + + + DCE +S+ +S LDVE+ I GHY L Sbjct: 2 ELLGVEYLPAPGGATLRLYIDVPLAEQPERVINVDDCERVSREVSAQLDVEDPISGHYTL 61 Query: 93 EVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGE 152 EVSSPG+DRP+ F R G + L+ +++ G+I+ Sbjct: 62 EVSSPGVDRPLFTLEQFARHAGESTKIVLKLAQDGRRRFQGEILRIDAEA------GAVV 115 Query: 153 KDMNELQIAISFDSLLSARL 172 ++ + I FD++ AR+ Sbjct: 116 FAIDGKDVQIGFDNIDKARI 135 >gi|255319714|ref|ZP_05360922.1| conserved hypothetical protein [Acinetobacter radioresistens SK82] gi|262380004|ref|ZP_06073159.1| UPF0090 protein [Acinetobacter radioresistens SH164] gi|255303243|gb|EET82452.1| conserved hypothetical protein [Acinetobacter radioresistens SK82] gi|262298198|gb|EEY86112.1| UPF0090 protein [Acinetobacter radioresistens SH164] Length = 174 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 44/175 (25%), Positives = 77/175 (44%), Gaps = 23/175 (13%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERD-----------DG----- 62 + +I P +E I L + K L++IF+++ DG Sbjct: 5 NKTQALHDLIAPAVEACDVELWGIEFLPQGKRSLVRIFIDKPVDENAEPVLNEDGELEQG 64 Query: 63 -NMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 + ++DC ++Q + ILDV + I G Y LEVSSPG DRP + + G VA + Sbjct: 65 RGIGVQDCVRVTQQVGAILDVHDPISGEYSLEVSSPGWDRPFFQLEQMSAYIGQQVALRL 124 Query: 122 VLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 + + +++K K++ LE+E+ + + I +++ A LI D Sbjct: 125 ISAVDNRRKFQAKLVSVD-----LEQEQIQVEVEGSKVLEIDSNNIDKANLIYQD 174 >gi|91782987|ref|YP_558193.1| hypothetical protein Bxe_A2822 [Burkholderia xenovorans LB400] gi|296158770|ref|ZP_06841599.1| protein of unknown function DUF150 [Burkholderia sp. Ch1-1] gi|123358892|sp|Q140U8|RIMP_BURXL RecName: Full=Ribosome maturation factor rimP gi|91686941|gb|ABE30141.1| Conserved hypothetical protein [Burkholderia xenovorans LB400] gi|295890975|gb|EFG70764.1| protein of unknown function DUF150 [Burkholderia sp. Ch1-1] Length = 152 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 38/150 (25%), Positives = 74/150 (49%), Gaps = 9/150 (6%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I+ + + + V + +L I++++ G + + DCE++++ + +L VE Sbjct: 2 QLTELIETTVVGLGYELVDLE--RTGRGMLCIYIDQPAG-IAIEDCEKVTRQLQHVLTVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DRP+ + +DF R+ G V + ++ G + Sbjct: 59 NI--DYERLEVSSPGLDRPLKKLADFERFAGSEVVITLKKPLDGRKSYRGILHAPQGETI 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLI 173 LE E + M + +A + ARL+ Sbjct: 117 GLEFEGKEGAAMLDFTLA----DMDKARLV 142 >gi|28198120|ref|NP_778434.1| hypothetical protein PD0192 [Xylella fastidiosa Temecula1] gi|28056180|gb|AAO28083.1| conserved hypothetical protein [Xylella fastidiosa Temecula1] Length = 216 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 85/156 (54%), Gaps = 12/156 (7%) Query: 24 DISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVE-----RDDGNMTLRDCEELSQAIS 77 +I +++ P +E + F + L +L+++++ + + +++ DCE +S+ +S Sbjct: 24 EIVNLLAPKVEMLGFDLLGAEYLLVPSGAILRLYIDIPFAMQPECMVSIDDCERVSREVS 83 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD+E I G+Y LEVSSPG+DR + F R + H+V + L ++L GKI+ Sbjct: 84 AYLDLEEPISGNYTLEVSSPGLDRRLFTLEQFARHHNHLVKVGLKLQQHGSRRLQGKIVR 143 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + G F+ +N +++A+ F+++ AR++ Sbjct: 144 VEQVGGFV------VLLVNGVELAVDFNNIDKARIV 173 >gi|223934078|ref|ZP_03626027.1| protein of unknown function DUF150 [Streptococcus suis 89/1591] gi|253752515|ref|YP_003025656.1| hypothetical protein SSUSC84_1671 [Streptococcus suis SC84] gi|253754341|ref|YP_003027482.1| hypothetical protein SSU1646 [Streptococcus suis P1/7] gi|253756275|ref|YP_003029415.1| hypothetical protein SSUBM407_1719 [Streptococcus suis BM407] gi|302024449|ref|ZP_07249660.1| hypothetical protein Ssui0_07814 [Streptococcus suis 05HAS68] gi|330833474|ref|YP_004402299.1| hypothetical protein SSUST3_1700 [Streptococcus suis ST3] gi|223897248|gb|EEF63660.1| protein of unknown function DUF150 [Streptococcus suis 89/1591] gi|251816804|emb|CAZ52447.1| conserved hypothetical protein [Streptococcus suis SC84] gi|251818739|emb|CAZ56575.1| conserved hypothetical protein [Streptococcus suis BM407] gi|251820587|emb|CAR47343.1| conserved hypothetical protein [Streptococcus suis P1/7] gi|319758924|gb|ADV70866.1| hypothetical protein SSUJS14_1808 [Streptococcus suis JS14] gi|329307697|gb|AEB82113.1| hypothetical protein SSUST3_1700 [Streptococcus suis ST3] Length = 156 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 76/158 (48%), Gaps = 9/158 (5%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + +++ I P I+ + V + + + +L IFV+++ G ++L+D +LS+ ISP Sbjct: 3 SIIELVTAAITPAIQ-TPYELVDVEYGKMGGDYVLSIFVDKE-GGISLQDTADLSEKISP 60 Query: 79 ILDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 ILD + Y LEV+SPG++RP+ + G + ++ + + G ++ Sbjct: 61 ILDTIKPDPFPDQYMLEVTSPGLERPLKTADAVEKAVGKYIHVKLYQAIDKIKVFEGTLL 120 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 T +E + K ++ I + ++ ARL V Sbjct: 121 SFDGTDLIMEYMDKTRKK----EVTIPYQTVAKARLAV 154 >gi|210622609|ref|ZP_03293269.1| hypothetical protein CLOHIR_01217 [Clostridium hiranonis DSM 13275] gi|210154110|gb|EEA85116.1| hypothetical protein CLOHIR_01217 [Clostridium hiranonis DSM 13275] Length = 154 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 78/148 (52%), Gaps = 2/148 (1%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQ 74 + + ++ + +E + +V + ++E L++ V+++ G ++L +CEE+S+ Sbjct: 1 MKKSEIVDRVEKMVTAITDEKGYETVDVEYVKEAGQFYLRVVVDKE-GGISLNECEEVSR 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 +SP LD + IE +Y LEVSSPGIDR + R +F+++ G V ++ + ++ G+ Sbjct: 60 ELSPKLDENDFIEENYYLEVSSPGIDRALKRDKEFVKYKGRDVEIKLYKAIDGVKQFEGE 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAI 162 ++G E + E N +AI Sbjct: 120 LVGLDEENNIVVIINNEEMKFNRKDVAI 147 >gi|75908092|ref|YP_322388.1| hypothetical protein Ava_1871 [Anabaena variabilis ATCC 29413] gi|91208393|sp|Q3MBZ3|RIMP_ANAVT RecName: Full=Ribosome maturation factor rimP gi|75701817|gb|ABA21493.1| Protein of unknown function DUF150 [Anabaena variabilis ATCC 29413] Length = 153 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 11/157 (7%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L I+ + PV E++ V I ++ +L++ + + L DCE +S+A+ Sbjct: 5 LVPPITDLAIPVAEQLGLEVVGIVFHTNQRPPVLRVDIRNPQQDTGLDDCERMSRALEAA 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD II Y LEVSSPGI R +V +F+ + G V +Q+ IG+++ Sbjct: 65 LDATEIIPDAYVLEVSSPGISRQLVTDREFISFKGFPVIVSTSPPHEGQQEWIGQLIRRD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 ET ++ ++ R I I + R+++ D Sbjct: 125 ETKVYINQKGRV--------IEIPRSLIT--RVLLHD 151 >gi|94310971|ref|YP_584181.1| hypothetical protein Rmet_2033 [Cupriavidus metallidurans CH34] gi|166980260|sp|Q1LLR4|RIMP_RALME RecName: Full=Ribosome maturation factor rimP gi|93354823|gb|ABF08912.1| conserved hypothetical protein [Cupriavidus metallidurans CH34] Length = 162 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 80/153 (52%), Gaps = 12/153 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I+ + M + V++ LL++++++ + + + DCE++S+ ++ +L VEN Sbjct: 3 LADLIETTLIGMGYELVELERAPAG--LLRVYIDQPETGIVIEDCEKVSRQLTHVLTVEN 60 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG-- 142 + + RLEVSSPG+DRP+ + +DF+R+ G V + L ++ +G + + Sbjct: 61 V--DYERLEVSSPGLDRPLKKLADFVRFAGAEVRVTLRLPVNGQKNFVGILCEPAGDAGA 118 Query: 143 --FFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 LE E + + E I + ARL+ Sbjct: 119 EKIGLEFEGKDGPALLEFAI----SDVDRARLV 147 >gi|169797409|ref|YP_001715202.1| hypothetical protein ABAYE3440 [Acinetobacter baumannii AYE] gi|184156668|ref|YP_001845007.1| hypothetical protein ACICU_00348 [Acinetobacter baumannii ACICU] gi|213155777|ref|YP_002317822.1| hypothetical protein AB57_0413 [Acinetobacter baumannii AB0057] gi|215484848|ref|YP_002327085.1| hypothetical protein ABBFA_003201 [Acinetobacter baumannii AB307-0294] gi|239500932|ref|ZP_04660242.1| hypothetical protein AbauAB_01325 [Acinetobacter baumannii AB900] gi|260556301|ref|ZP_05828520.1| UPF0090 protein [Acinetobacter baumannii ATCC 19606] gi|301346316|ref|ZP_07227057.1| hypothetical protein AbauAB0_08725 [Acinetobacter baumannii AB056] gi|301513269|ref|ZP_07238506.1| hypothetical protein AbauAB05_16841 [Acinetobacter baumannii AB058] gi|301596449|ref|ZP_07241457.1| hypothetical protein AbauAB059_11562 [Acinetobacter baumannii AB059] gi|332855374|ref|ZP_08435839.1| hypothetical protein HMPREF0021_03428 [Acinetobacter baumannii 6013150] gi|332867630|ref|ZP_08437762.1| hypothetical protein HMPREF0020_01378 [Acinetobacter baumannii 6013113] gi|332873076|ref|ZP_08441033.1| hypothetical protein HMPREF0022_00636 [Acinetobacter baumannii 6014059] gi|226703746|sp|B7H117|RIMP_ACIB3 RecName: Full=Ribosome maturation factor rimP gi|226703825|sp|B0VE83|RIMP_ACIBY RecName: Full=Ribosome maturation factor rimP gi|226703842|sp|B2I2M5|RIMP_ACIBC RecName: Full=Ribosome maturation factor rimP gi|226703866|sp|A3M1K2|RIMP_ACIBT RecName: Full=Ribosome maturation factor rimP gi|226706136|sp|B7I3R7|RIMP_ACIB5 RecName: Full=Ribosome maturation factor rimP gi|169150336|emb|CAM88233.1| conserved hypothetical protein [Acinetobacter baumannii AYE] gi|183208262|gb|ACC55660.1| uncharacterized protein conserved in bacteria [Acinetobacter baumannii ACICU] gi|193076181|gb|ABO10796.2| hypothetical protein A1S_0334 [Acinetobacter baumannii ATCC 17978] gi|213054937|gb|ACJ39839.1| conserved hypothetical protein [Acinetobacter baumannii AB0057] gi|213988150|gb|ACJ58449.1| conserved hypothetical protein [Acinetobacter baumannii AB307-0294] gi|260410356|gb|EEX03655.1| UPF0090 protein [Acinetobacter baumannii ATCC 19606] gi|322506555|gb|ADX02009.1| Putative uncharacterized protein [Acinetobacter baumannii 1656-2] gi|323516434|gb|ADX90815.1| hypothetical protein ABTW07_0378 [Acinetobacter baumannii TCDC-AB0715] gi|332727506|gb|EGJ58932.1| hypothetical protein HMPREF0021_03428 [Acinetobacter baumannii 6013150] gi|332733824|gb|EGJ64971.1| hypothetical protein HMPREF0020_01378 [Acinetobacter baumannii 6013113] gi|332738588|gb|EGJ69458.1| hypothetical protein HMPREF0022_00636 [Acinetobacter baumannii 6014059] Length = 174 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 43/175 (24%), Positives = 77/175 (44%), Gaps = 23/175 (13%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERD-----------DG----- 62 + + +I P +E I L + K LL+I+++R DG Sbjct: 5 NKSQALYDMIAPAVEACGVDLWGIEFLPQGKRSLLRIYIDRPVDENAEPVINEDGEVEQG 64 Query: 63 -NMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 + + DC ++Q + +LDV + I G Y LEVSSPG DRP + + G VA + Sbjct: 65 RGIGVEDCVRVTQQVGAMLDVHDPISGEYALEVSSPGWDRPFFQLEQLQGYIGQQVALRL 124 Query: 122 VLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 + + +++K K++ ++ E G+ ++ I +++ A LI D Sbjct: 125 IAAVENRRKFQAKLLAVDLENEEIQVEVEGKHVLD-----IDSNNIDKANLIYQD 174 >gi|322391043|ref|ZP_08064547.1| protein of hypothetical function DUF150 [Streptococcus parasanguinis ATCC 903] gi|321142273|gb|EFX37747.1| protein of hypothetical function DUF150 [Streptococcus parasanguinis ATCC 903] Length = 159 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + ++ VIQP I+E F V + + + +L IFV++ +G +TL D +L++ ISP+ Sbjct: 7 IVDLVTEVIQPAIQE-PFELVDVEYGKMGGDYVLSIFVDKPEG-ITLNDTADLTEIISPL 64 Query: 80 LDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LEV+SPG++RP+ K G V + + ++ G ++ Sbjct: 65 LDQIKPDPFPEQYFLEVTSPGLERPLKTKQALEGALGKYVNISLYKAVEKQKVFEGTLVR 124 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + K + I ++ + ARL V Sbjct: 125 FEEDVLTIEYMDKTRKK----TVEIPYNLVSKARLAV 157 >gi|218247499|ref|YP_002372870.1| hypothetical protein PCC8801_2713 [Cyanothece sp. PCC 8801] gi|257061165|ref|YP_003139053.1| hypothetical protein Cyan8802_3390 [Cyanothece sp. PCC 8802] gi|226701501|sp|B7K5I1|RIMP_CYAP8 RecName: Full=Ribosome maturation factor rimP gi|218167977|gb|ACK66714.1| protein of unknown function DUF150 [Cyanothece sp. PCC 8801] gi|256591331|gb|ACV02218.1| protein of unknown function DUF150 [Cyanothece sp. PCC 8802] Length = 153 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 72/153 (47%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 L I ++ P+ E+ V + K +L++ + G +L DCE +S+A+ + Sbjct: 5 LIPQIINLATPIAEDRGLEVVDVVFQTNKRPPVLRVDIRNSQGETSLDDCEAVSRALEAV 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD ++ G Y LE+SSPGI R + +F+ + G V + D ++ G++ G Sbjct: 65 LDESQVMGGSYVLEISSPGISRQLHSDREFISFKGFAVIVTTEIPYLDHKEWRGQLQGRD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 E+ ++ ++ R IAI + + +L Sbjct: 125 ESAVYINQKGRA--------IAIPRELIAKVQL 149 >gi|117927004|ref|YP_867621.1| hypothetical protein Mmc1_3730 [Magnetococcus sp. MC-1] gi|189040289|sp|A0LE22|RIMP_MAGSM RecName: Full=Ribosome maturation factor rimP gi|117610760|gb|ABK46215.1| protein of unknown function DUF150 [Magnetococcus sp. MC-1] Length = 185 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 74/164 (45%), Gaps = 19/164 (11%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVER------DDGNMTLRDCEEL 72 +A + ++ + V++ E ++++ ++ + +++L +C + Sbjct: 26 DIAQKVEALAIQAAKTEDCEVVEVIYRREGGVYVVRVAADKLPDDQGQERHISLDECGSI 85 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG----DK 128 S+ IS +LDV ++I Y LEVSSPGI+RP+++ DF R+ G +V + Sbjct: 86 SRQISSLLDVHDVIPNAYHLEVSSPGIERPLIKDGDFTRFAGKLVEIRTYQPMDTESGPR 145 Query: 129 QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +K G ++G E + ++ I ++ + A L Sbjct: 146 KKFRGTLLGLQEAMVVV--------AEANGEVRIPWEQVAKAHL 181 >gi|296877070|ref|ZP_06901111.1| protein of hypothetical function DUF150 [Streptococcus parasanguinis ATCC 15912] gi|312867870|ref|ZP_07728075.1| conserved hypothetical protein [Streptococcus parasanguinis F0405] gi|296431931|gb|EFH17737.1| protein of hypothetical function DUF150 [Streptococcus parasanguinis ATCC 15912] gi|311096625|gb|EFQ54864.1| conserved hypothetical protein [Streptococcus parasanguinis F0405] Length = 159 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 77/157 (49%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + ++ VIQP I+E F V + + + +L IFV++ +G +TL D +L++ ISP+ Sbjct: 7 IVDLVTEVIQPAIKE-PFELVDVEYGKMGGDYVLSIFVDKPEG-ITLNDTADLTEIISPL 64 Query: 80 LDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LEV+SPG++RP+ K G V + + ++ G ++G Sbjct: 65 LDQIKPDPFPEQYFLEVTSPGLERPLKTKEALEGAVGKYVNISLYKAVEKQKVFEGNLVG 124 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + K + I ++ + ARL V Sbjct: 125 FEEDVLTIEYMDKTRKK----TVDIPYNLVSKARLAV 157 >gi|262374025|ref|ZP_06067302.1| conserved hypothetical protein [Acinetobacter junii SH205] gi|262311036|gb|EEY92123.1| conserved hypothetical protein [Acinetobacter junii SH205] Length = 174 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 41/175 (23%), Positives = 77/175 (44%), Gaps = 23/175 (13%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERD-----------DG----- 62 + + +I P + I L + K LL+I++++ DG Sbjct: 5 NKSQALHDLIAPAVAACGVDLWGIEFLPQGKRSLLRIYIDKPVDENAEPILNEDGELEQG 64 Query: 63 -NMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 + ++DC ++Q + +LDV + I G Y LEVSSPG DRP + + + G VA + Sbjct: 65 RGIGVQDCVLVTQQVGAMLDVHDPISGEYALEVSSPGWDRPFFQLNQLPAYIGQQVALRL 124 Query: 122 VLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 + + +++K K++ ++ E G+ + I +++ A LI D Sbjct: 125 IAAVENRRKFQAKLLSVDLENELIQVEVEGKH-----VLEIDSNNIDKANLIYQD 174 >gi|322391411|ref|ZP_08064881.1| essential protein [Streptococcus peroris ATCC 700780] gi|321145837|gb|EFX41228.1| essential protein [Streptococcus peroris ATCC 700780] Length = 207 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 76/157 (48%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + V++PVIE F V I + +++L IFV++ +G +TL D +L++ ISP+ Sbjct: 55 IVELVREVVEPVIEA-PFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEIISPV 112 Query: 80 LDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LE++SPG++RP+ K G + + + ++ G ++ Sbjct: 113 LDTIKPDPFPEQYFLEITSPGLERPLKTKEAVAGAVGKYIHVGLYQAIDKQKVFEGTLLS 172 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + K + I ++ + ARL V Sbjct: 173 FEEDELTMEYMDKTRKK----TVQIPYNLVSKARLAV 205 >gi|119485068|ref|ZP_01619453.1| hypothetical protein L8106_06459 [Lyngbya sp. PCC 8106] gi|119457296|gb|EAW38421.1| hypothetical protein L8106_06459 [Lyngbya sp. PCC 8106] Length = 172 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 66/150 (44%), Gaps = 9/150 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQ-ISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L I + PV E + V + +L++ + + + L DCE++S+A+ Sbjct: 24 LVPKIIDLATPVAEALGLEVVGAVFYTNHSPPVLRVDIRNPNQDTGLDDCEQMSRALEEQ 83 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + I Y LE+SSPGI + + DF+ + G + + ++ GK++ Sbjct: 84 LDTIDFIPDAYVLEISSPGISQILTSDRDFISFKGFPILIRTSEAYKGYKEWSGKLIRRD 143 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLS 169 ET +L ++ R Q+AI + Sbjct: 144 ETAVYLNQKGR--------QMAIPRPVIAE 165 >gi|296328567|ref|ZP_06871086.1| probable cytoplasmic protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154376|gb|EFG95175.1| probable cytoplasmic protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 156 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 77/156 (49%), Gaps = 11/156 (7%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAI 76 + + I+ ++ P IEEM+ V + +++ ++IF+E +G++ + DC +LS I Sbjct: 4 NNQIVEKITRIVNPFIEEMNLSLVDVEYVQDGGYWYVRIFIENLNGDLNIEDCSKLSSKI 63 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 + E +IE + LEVSSPG++RP+ + D+ R+ G + + DK++ I Sbjct: 64 EDKI--EELIEHKFFLEVSSPGLERPLKKLEDYTRFIGEKITLHLKHKLDDKKQFKTIIK 121 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + +K+ ++ I F+ + A + Sbjct: 122 EVNGDNIIFLMDKK--------EVEIKFNEIRKANI 149 >gi|268608288|ref|ZP_06142015.1| hypothetical protein RflaF_02144 [Ruminococcus flavefaciens FD-1] Length = 157 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 76/154 (49%), Gaps = 9/154 (5%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISP 78 G + +I+P+ +E+ + + ++E L+IF+++D+G +++ DCE + IS Sbjct: 8 GTEQKVYDLIKPITDELGYYLWDVCYVKEGAMWYLRIFIDQDEG-ISIDDCERATAPISD 66 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 ILD + + Y LEV S G++R +V++ F G V + + ++++ +++G Sbjct: 67 ILDEADPVPQQYMLEVGSAGLERELVKEEHFEVCKGDTVTLKFFRAVDGEKEIRAELVGA 126 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + G + KE EK I + +L Sbjct: 127 DKDGITVIKEDGTEK-------TIPLADVSVVKL 153 >gi|169634555|ref|YP_001708291.1| hypothetical protein ABSDF3182 [Acinetobacter baumannii SDF] gi|226703734|sp|B0VLU4|RIMP_ACIBS RecName: Full=Ribosome maturation factor rimP gi|169153347|emb|CAP02460.1| conserved hypothetical protein [Acinetobacter baumannii] Length = 174 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 23/175 (13%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVER-----------DDG----- 62 + + +I P +E I L + K LL+I+++R +DG Sbjct: 5 NKSQALYDMIAPAVEACGVDLWGIEFLPQGKRSLLRIYIDRTVDENAEPVINEDGEVEQG 64 Query: 63 -NMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 + + DC ++Q + +LDV + I G Y LEVSSPG DRP + + G VA + Sbjct: 65 RGIGVEDCVRVTQQVGAMLDVHDPISGEYALEVSSPGWDRPFFQLEQLQGYIGQQVALRL 124 Query: 122 VLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 + + +++K K++ ++ E G+ ++ I +++ A LI D Sbjct: 125 IAAVENRRKFQAKLLAVDLENEEIQVEVEGKHVLD-----IDSNNIDKANLIYQD 174 >gi|170696461|ref|ZP_02887587.1| protein of unknown function DUF150 [Burkholderia graminis C4D1M] gi|209520194|ref|ZP_03268965.1| protein of unknown function DUF150 [Burkholderia sp. H160] gi|295676259|ref|YP_003604783.1| protein of unknown function DUF150 [Burkholderia sp. CCGE1002] gi|307730030|ref|YP_003907254.1| hypothetical protein BC1003_2000 [Burkholderia sp. CCGE1003] gi|323525723|ref|YP_004227876.1| hypothetical protein BC1001_1380 [Burkholderia sp. CCGE1001] gi|170138614|gb|EDT06816.1| protein of unknown function DUF150 [Burkholderia graminis C4D1M] gi|209499353|gb|EDZ99437.1| protein of unknown function DUF150 [Burkholderia sp. H160] gi|295436102|gb|ADG15272.1| protein of unknown function DUF150 [Burkholderia sp. CCGE1002] gi|307584565|gb|ADN57963.1| protein of unknown function DUF150 [Burkholderia sp. CCGE1003] gi|323382725|gb|ADX54816.1| protein of unknown function DUF150 [Burkholderia sp. CCGE1001] Length = 152 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 37/150 (24%), Positives = 73/150 (48%), Gaps = 9/150 (6%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I+ + + + V + +L I++++ G + + DCE++++ + +L VE Sbjct: 2 QLTELIETTVVGLGYELVDLE--RTGRGMLCIYIDQPAG-IAIEDCEKVTRQLQHVLTVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DRP+ + +DF R+ G + ++ G + Sbjct: 59 NI--DYERLEVSSPGLDRPLKKLADFERFAGSEAVITLKKPLDGRKSYRGILHAPQGETI 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLI 173 LE E + M + +A + ARL+ Sbjct: 117 GLEFEGKEGAAMLDFTLA----DMDKARLV 142 >gi|260550520|ref|ZP_05824730.1| UPF0090 protein [Acinetobacter sp. RUH2624] gi|260406435|gb|EEW99917.1| UPF0090 protein [Acinetobacter sp. RUH2624] Length = 174 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 23/175 (13%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERD-----------DG----- 62 + + +I P ++ I L + K LL+I+++R DG Sbjct: 5 NKSQALYDMIAPAVQACGVDLWGIEFLPQGKRSLLRIYIDRPVDENAEPVINEDGEVEQG 64 Query: 63 -NMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 + ++DC ++Q + +LDV + I G Y LEVSSPG DRP + + G VA + Sbjct: 65 RGIGVQDCVRVTQQVGAMLDVHDPISGEYSLEVSSPGWDRPFFQLEQLQSYIGQQVALRL 124 Query: 122 VLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 + + +++K K++ LE E+ + + + I +++ A LI D Sbjct: 125 IAAVENRRKFQAKLLAVD-----LENEEIKVEVEGKHVLDIDSNNIDKANLIYQD 174 >gi|259016317|sp|B0U1Q6|RIMP_XYLFM RecName: Full=Ribosome maturation factor rimP Length = 199 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 85/156 (54%), Gaps = 12/156 (7%) Query: 24 DISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVE-----RDDGNMTLRDCEELSQAIS 77 +I +++ P +E + F + + +L+++++ + + +++ DCE +S+ +S Sbjct: 7 EIVNLLAPKVEMLGFDLLGAEYVLVPSGAILRLYIDIPFAMQPECMVSIDDCERVSREVS 66 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD+E I G+Y LEVSSPG+DR + F R + H+V + L ++L GKI+ Sbjct: 67 AYLDLEEPISGNYTLEVSSPGLDRRLFTLEQFARHHNHLVKVGLKLQQHGSRRLQGKIVR 126 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + G F+ +N +++A+ F+++ AR++ Sbjct: 127 VEQVGGFV------VLLVNGVELAVDFNNIDKARIV 156 >gi|307155147|ref|YP_003890531.1| hypothetical protein Cyan7822_5377 [Cyanothece sp. PCC 7822] gi|306985375|gb|ADN17256.1| protein of unknown function DUF150 [Cyanothece sp. PCC 7822] Length = 153 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 72/153 (47%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 + I + P+ E++ V++ K +L++ + + +L DCE++S+++ Sbjct: 5 VIPQIIDLATPIAEQLGLEIVEVVFQTNKRPPVLRVDIRNKSSDTSLNDCEQMSRSLEAN 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD +I G Y LE+SSPGI R + +F+ + G + + ++++ GK+ G Sbjct: 65 LDATELIPGSYVLEISSPGISRQLNSDREFIVFKGFDIIVKTDTPFENQKEWRGKLQGRD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 E +L K+ R IAI + +L Sbjct: 125 EQAVYLNKKGRV--------IAIPRQLITKVQL 149 >gi|322387177|ref|ZP_08060787.1| hypothetical protein HMPREF9423_0185 [Streptococcus infantis ATCC 700779] gi|321141706|gb|EFX37201.1| hypothetical protein HMPREF9423_0185 [Streptococcus infantis ATCC 700779] Length = 183 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 76/157 (48%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + V++PVIE F V I + +++L IFV++ +G +TL D +L++ ISP+ Sbjct: 31 IVELVREVVEPVIEA-PFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEIISPV 88 Query: 80 LDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LE++SPG++RP+ K G + + + ++ G ++ Sbjct: 89 LDTIKPDPFPEQYFLEITSPGLERPLKTKEAVAGAVGKYIHVGLYQAIDKQKVFEGTLLS 148 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + K + I ++ + ARL V Sbjct: 149 FEEDELTMEYMDKTRKK----TVRIPYNLVSKARLAV 181 >gi|294101967|ref|YP_003553825.1| protein of unknown function DUF150 [Aminobacterium colombiense DSM 12261] gi|293616947|gb|ADE57101.1| protein of unknown function DUF150 [Aminobacterium colombiense DSM 12261] Length = 159 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 77/153 (50%), Gaps = 7/153 (4%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 +S+ ++ ++E + + V + +E KNL ++++++ G +T++DCE +S+++S LD Sbjct: 9 EKLSASLRQIVESLGYECVGVVFAQESKNLYVKVYID-VLGGITVKDCETVSRSLSRYLD 67 Query: 82 VEN-IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + + Y LEV S G+DRP+ D+ R+ G V +++ G I+ Sbjct: 68 ENDSALPDRYFLEVGSAGLDRPLFSLDDYARFAGKKVKIRCQTLVEGRKRFTGTILSVDN 127 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 K + + ++ ++ I F S+ L+ Sbjct: 128 AT----KTVCVQLEESDQKVEIPFASIQKGNLV 156 >gi|288904584|ref|YP_003429805.1| hypothetical protein GALLO_0368 [Streptococcus gallolyticus UCN34] gi|306830579|ref|ZP_07463746.1| protein of hypothetical function DUF150 [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977558|ref|YP_004287274.1| hypothetical protein SGGBAA2069_c03580 [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288731309|emb|CBI12860.1| conserved hypothetical protein [Streptococcus gallolyticus UCN34] gi|304427297|gb|EFM30402.1| protein of hypothetical function DUF150 [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177486|emb|CBZ47530.1| conserved hypothetical protein [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 177 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 73/157 (46%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + ++ V+ P I+E F V + + + +L I +++ +G +T+ D EL++ ISP+ Sbjct: 25 IINVVTEVVAPAIKE-PFELVDVEYEKMGSDYVLSILIDKPEG-ITVDDTAELTEIISPL 82 Query: 80 LDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LEVSSPG++RP+ K + G V + + + G ++ Sbjct: 83 LDAIKPDPFPEQYMLEVSSPGLERPLKTKEALEKAVGSYVNVSLYKAIDKVKVFQGDLVA 142 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ + K + I + ++ ARL V Sbjct: 143 FDGDTLTIDYLDKTRKK----TVEIPYSTVAKARLAV 175 >gi|222153584|ref|YP_002562761.1| hypothetical protein SUB1470 [Streptococcus uberis 0140J] gi|259645120|sp|B9DVC1|RIMP_STRU0 RecName: Full=Ribosome maturation factor rimP gi|222114397|emb|CAR43160.1| conserved hypothetical protein [Streptococcus uberis 0140J] Length = 158 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 70/162 (43%), Gaps = 9/162 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + + + PVIE + V + + + +L +FV+++ G +++ D L++ Sbjct: 1 MANQTIIDTVMKTVSPVIEP-PYELVDVEYEKMGSDYILSVFVDKE-GGISVEDTVTLTE 58 Query: 75 AISPILDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 ISP+LD + Y LEVSSPG++RP+ + G V + + + Sbjct: 59 LISPLLDAIHPDPFPEQYMLEVSSPGLERPLKTPEALTKAIGSYVNVSLYKAIDKVKVFQ 118 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G ++ + + + + I + ++ ARL V Sbjct: 119 GDLVAFDGDTLTIHYLDKTRQK----TVEIPYQTVAKARLAV 156 >gi|258645577|ref|ZP_05733046.1| hypothetical protein GCWU000321_00427 [Dialister invisus DSM 15470] gi|260402935|gb|EEW96482.1| hypothetical protein GCWU000321_00427 [Dialister invisus DSM 15470] Length = 156 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 86/157 (54%), Gaps = 9/157 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G + + +++P ++++ + + + E+N +L++F++++DG + L DC+++S+ Sbjct: 1 MGRKEIELEAERLLEPALKQLGIELIDVEYVRERNWILRVFIDKEDG-VDLNDCQQISEK 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS---SGDKQKLI 132 +LD ++I +Y LEVSSPG+DR + + DFLR+ G V ++ G + Sbjct: 60 AGELLDEADLISANYMLEVSSPGLDRVLKKDKDFLRYAGEEVDVKLFAPLEEVGGVKAFT 119 Query: 133 GKIMGTSETG-FFLEKEKR----GEKDMNELQIAISF 164 + G S+ G L + + G+ +++++I SF Sbjct: 120 AVLDGLSDDGQIRLIFQDKTITLGKDKISQIRIHFSF 156 >gi|189183524|ref|YP_001937309.1| hypothetical protein OTT_0617 [Orientia tsutsugamushi str. Ikeda] gi|254806539|sp|B3CR92|RIMP_ORITI RecName: Full=Ribosome maturation factor rimP gi|189180295|dbj|BAG40075.1| hypothetical protein OTT_0617 [Orientia tsutsugamushi str. Ikeda] Length = 160 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 52/167 (31%), Positives = 93/167 (55%), Gaps = 9/167 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVER-DDGNMTLRDCEELSQAISPI 79 L I +I P + + ++ + ++ + K +L+I ++R D+ + + DC+ S+AIS + Sbjct: 2 LNDKIKELITPTAKALGYKVINVNFV-VKPAILKIVIDRFDEKKVKVLDCQAFSKAISAV 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVENII G Y LEV S GI+R ++ DF+++ G+ + ++V + + +K IG I Sbjct: 61 LDVENIIPGKYFLEVESAGIERSLMDLEDFIKFLGYTIQVKLVAAINENKKYIGVISNIK 120 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNY 186 L + N+ IAI +D++ A+++ TDE+ R NY Sbjct: 121 GQEITLNLQ-------NDSTIAIDYDNIKVAKIVFTDEMFRQITKNY 160 >gi|241662812|ref|YP_002981172.1| hypothetical protein Rpic12D_1208 [Ralstonia pickettii 12D] gi|309782265|ref|ZP_07676993.1| hypothetical protein HMPREF1004_03620 [Ralstonia sp. 5_7_47FAA] gi|240864839|gb|ACS62500.1| protein of unknown function DUF150 [Ralstonia pickettii 12D] gi|308918958|gb|EFP64627.1| hypothetical protein HMPREF1004_03620 [Ralstonia sp. 5_7_47FAA] Length = 162 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 74/153 (48%), Gaps = 12/153 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I+ + M + V++ LL++++++ + + + DCE++S ++ + +VEN Sbjct: 3 LTDLIEKTLTAMGYELVEVERAPAG--LLRVYIDQAENGVVIEDCEKVSHQLTRVFEVEN 60 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE---- 140 + + RLEVSSPG+DRP+ +DF R+ G + L ++ G I + Sbjct: 61 V--NYERLEVSSPGLDRPLRTLADFTRFAGLEAKVTLRLPVNGQKNFTGIIQAPTGEPGQ 118 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 LE E + + + L ARL+ Sbjct: 119 ERIGLEFEGK----EGPALLEFTLSELDRARLV 147 >gi|260495124|ref|ZP_05815253.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33] gi|260197567|gb|EEW95085.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33] Length = 156 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 79/157 (50%), Gaps = 11/157 (7%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQA 75 G+ + I+ ++ P +EEM+ V + +++ ++IF+E +G++++ DC +LS Sbjct: 3 GNNQIVEKITEIVNPFVEEMNLSLVDVEYVQDGAYWYIRIFIENLNGDLSIEDCSKLSSK 62 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I + E +IE + LEVSSPG++RP+ + D++R+ G + + DK++ I Sbjct: 63 IEDKI--EKLIEHKFFLEVSSPGLERPLKKIEDYIRFTGEKITLHLKHKLDDKKQFKAII 120 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + +K+ +I I F+ + + Sbjct: 121 KEVNGDNIIFLIDKK--------EIEIKFNEIRKTNI 149 >gi|284108774|ref|ZP_06386439.1| protein of unknown function DUF150 [Candidatus Poribacteria sp. WGA-A3] gi|283829848|gb|EFC34139.1| protein of unknown function DUF150 [Candidatus Poribacteria sp. WGA-A3] Length = 157 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 83/154 (53%), Gaps = 4/154 (2%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISP 78 GL + + +P+ + + +++ + ++++ VE++ G + ++DCE+ Q++ Sbjct: 3 GLGSLVQGIAEPIAKALRLEIIEVECHGQGAKTIVRVIVEKE-GGVGIQDCEQFHQSLGR 61 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LDV + + YRL+VSSPG+DRP+ R+ D+ + G + ++ K ++G++ Sbjct: 62 ALDVADPVAHAYRLDVSSPGLDRPLKRRKDYDQAVGRTIRVKVHAPVQGKGTVVGQLAEV 121 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + G L+ R K ++A+ +D++ A+L Sbjct: 122 DDQGITLQVPVR--KSRTPRRVALEWDAIAHAKL 153 >gi|320547938|ref|ZP_08042221.1| protein of hypothetical function DUF150 [Streptococcus equinus ATCC 9812] gi|320447478|gb|EFW88238.1| protein of hypothetical function DUF150 [Streptococcus equinus ATCC 9812] Length = 150 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 71/153 (46%), Gaps = 9/153 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ V+ P I+E F V + + + +L I +++ G +T+ D +L++ ISP+LD Sbjct: 2 VTEVVAPAIKE-PFELVDVEYGKMGSDYVLSILIDKP-GGITVNDTADLTEIISPLLDAI 59 Query: 84 --NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + Y LEVSSPG++RP+ K + G V + + + G ++ Sbjct: 60 KPDPFPEQYMLEVSSPGLERPLKTKEALEKAVGSYVNVSLYKAIDKVKVFQGDLVAFDGE 119 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ + K + I + ++ ARL V Sbjct: 120 TLTIDYLDKTRKK----TVEIPYSTVAKARLAV 148 >gi|91208368|sp|Q3SKW9|RIMP_THIDA RecName: Full=Ribosome maturation factor rimP Length = 142 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 41/149 (27%), Positives = 83/149 (55%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 D+ + ++PV+ + + V + LL+IF+++ G +T+ DC +S ++ + VE Sbjct: 3 DLPARLEPVLAGLGYELVMLE--RAGRGLLRIFIDKP-GGVTIDDCVAVSNHLTHLFTVE 59 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DRP+V+ D+ R+ G V ++ + ++++L G+++G Sbjct: 60 NI--DYDRLEVSSPGLDRPLVKPQDYARFAGEQVTLKLRVPMDNRRRLSGQLLGLESDAV 117 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 L + R ++++ ++ +ARL Sbjct: 118 KLVVDGR--------EMSVDLRNVDAARL 138 >gi|182680748|ref|YP_001828908.1| hypothetical protein XfasM23_0177 [Xylella fastidiosa M23] gi|226695961|sp|B2I724|RIMP_XYLF2 RecName: Full=Ribosome maturation factor rimP gi|259016318|sp|Q87EV6|RIMP_XYLFT RecName: Full=Ribosome maturation factor rimP gi|182630858|gb|ACB91634.1| protein of unknown function DUF150 [Xylella fastidiosa M23] Length = 199 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 85/156 (54%), Gaps = 12/156 (7%) Query: 24 DISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVE-----RDDGNMTLRDCEELSQAIS 77 +I +++ P +E + F + L +L+++++ + + +++ DCE +S+ +S Sbjct: 7 EIVNLLAPKVEMLGFDLLGAEYLLVPSGAILRLYIDIPFAMQPECMVSIDDCERVSREVS 66 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD+E I G+Y LEVSSPG+DR + F R + H+V + L ++L GKI+ Sbjct: 67 AYLDLEEPISGNYTLEVSSPGLDRRLFTLEQFARHHNHLVKVGLKLQQHGSRRLQGKIVR 126 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + G F+ +N +++A+ F+++ AR++ Sbjct: 127 VEQVGGFV------VLLVNGVELAVDFNNIDKARIV 156 >gi|262370082|ref|ZP_06063409.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] gi|262315121|gb|EEY96161.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] Length = 174 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 76/175 (43%), Gaps = 23/175 (13%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVER-----------DDG----- 62 + +I P ++ I L + K LL+I++++ +DG Sbjct: 5 NKTQALQDLIAPAVQACGVDLWGIEFLPQGKRSLLRIYIDKAVDENAEPIINEDGEEEQG 64 Query: 63 -NMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 + ++DC ++Q + ++DV + I G Y LEVSSPG DRP + + G +A + Sbjct: 65 RGIGVQDCVRVTQQVGAMMDVHDPISGEYALEVSSPGWDRPFFQLEQLPAYIGQQIAFRL 124 Query: 122 VLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 + + +++K K++ ++ E + + I +++ A L+ D Sbjct: 125 ISAVDNRRKFQAKLVAVDLEAEMIQVEVEK-----QQVLEIDSNNIDKANLVYQD 174 >gi|16124301|ref|NP_418865.1| hypothetical protein CC_0045 [Caulobacter crescentus CB15] gi|13421139|gb|AAK22033.1| conserved hypothetical protein [Caulobacter crescentus CB15] Length = 160 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 11/149 (7%) Query: 47 EEKNLLLQIFVERD------DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGID 100 + LQI E G+M + DC +LS+A+S +LD + I G Y LEVSSPGID Sbjct: 3 GTEQRRLQIMAEHPLLEDGSGGDMNVEDCAKLSRAVSEVLDAADPIAGEYTLEVSSPGID 62 Query: 101 RPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQI 160 RP+ R DF + G E+ + +++ G++ G + L E +++ + Sbjct: 63 RPLTRLKDFDDYAGLEARIELDRVAEGRKRFKGELAGVEDDQVGLNIEGE-----DDVTV 117 Query: 161 AISFDSLLSARLIVTDELLRASLNNYGSY 189 F ++ A+L++TD L+ + Sbjct: 118 YFPFAWVIDAKLVMTDALMERGAKQRAAR 146 >gi|186685821|ref|YP_001869017.1| hypothetical protein Npun_R5776 [Nostoc punctiforme PCC 73102] gi|226707751|sp|B2J958|RIMP_NOSP7 RecName: Full=Ribosome maturation factor rimP gi|186468273|gb|ACC84074.1| protein of unknown function DUF150 [Nostoc punctiforme PCC 73102] Length = 153 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L I + PV EE+ V + + +L++ + + L DCE +S+A+ Sbjct: 5 LVPQIIDLATPVAEELGLEVVGVVFHTHQSPPVLRVDIRNPQQDTGLNDCERMSRALEAS 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD I+ Y LEVSSPGI R +V +F+ + G V +Q+ IG+++ Sbjct: 65 LDAAEIVPDTYVLEVSSPGISRQLVTDREFISFKGFPVIISTTPPYDGQQEWIGQLIRRD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 E +L ++ R + I + +L Sbjct: 125 EITLYLNQKGRV--------VEIPRSLITKVQL 149 >gi|148284845|ref|YP_001248935.1| hypothetical protein OTBS_1566 [Orientia tsutsugamushi str. Boryong] gi|254800562|sp|A5CEN4|RIMP_ORITB RecName: Full=Ribosome maturation factor rimP gi|146740284|emb|CAM80659.1| conserved hypothetical protein [Orientia tsutsugamushi str. Boryong] Length = 160 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 53/167 (31%), Positives = 93/167 (55%), Gaps = 9/167 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVER-DDGNMTLRDCEELSQAISPI 79 L I +I P + + ++ + +S + K +L+I ++R D+ + + DC+ S+AIS + Sbjct: 2 LNDKIKELITPTAKTLGYKVINVSFI-VKPAILKIVIDRFDEKKVNVLDCQVFSKAISAV 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVENII G Y LEV S GI+R ++ DF+++ G+ + ++V + + +K IG I Sbjct: 61 LDVENIIPGKYFLEVESAGIERSLMDLEDFIKFLGYTIQVKLVAAINENKKYIGVISNIK 120 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNY 186 L + N+ IAI +D++ A+++ TDE+ R NY Sbjct: 121 GQEITLNLQ-------NDSTIAIDYDNIKVAKIVFTDEMFRQITKNY 160 >gi|313885302|ref|ZP_07819053.1| conserved hypothetical protein [Eremococcus coleocola ACS-139-V-Col8] gi|312619408|gb|EFR30846.1| conserved hypothetical protein [Eremococcus coleocola ACS-139-V-Col8] Length = 157 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 73/157 (46%), Gaps = 8/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + +I+ + R V + L+E N L+++ ++ DG + L DC +S+ +S Sbjct: 4 VLEKVRPIIEETVAANDCRLVDLEYLKEGPNWYLRVYADK-DGGIDLDDCAFISEKLSEA 62 Query: 80 LD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LEVSSPG +RP+ +D G V + + ++ G ++ Sbjct: 63 LDLIKPDPFPKSYYLEVSSPGAERPLKTAADIEAAVGEYVHFDYYVPQYGEKFHEGNLLA 122 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +T + +E + + + ++ I ++ ARL + Sbjct: 123 VEDTLYRIEVKDKTRRK----ELEIDKKAVAKARLAI 155 >gi|187928208|ref|YP_001898695.1| hypothetical protein Rpic_1115 [Ralstonia pickettii 12J] gi|226696216|sp|B2UAA1|RIMP_RALPJ RecName: Full=Ribosome maturation factor rimP gi|187725098|gb|ACD26263.1| protein of unknown function DUF150 [Ralstonia pickettii 12J] Length = 162 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 74/153 (48%), Gaps = 12/153 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I+ + M + V++ LL++++++ + + + DCE++S ++ + +VEN Sbjct: 3 LTDLIEKTLTAMGYELVEVERAPAG--LLRVYIDQAENGVVIEDCEKVSHQLTRVFEVEN 60 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE---- 140 + + RLEVSSPG+DRP+ +DF R+ G + L ++ G I + Sbjct: 61 V--NYERLEVSSPGLDRPLRTLADFTRFAGLEAKVTLRLPVDGQKNFTGIIQAPTGEPGQ 118 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 LE E + + + L ARL+ Sbjct: 119 ERIGLEFEGK----EGPALLGFTLSELDRARLV 147 >gi|282898465|ref|ZP_06306455.1| Protein of unknown function DUF150 [Raphidiopsis brookii D9] gi|281196631|gb|EFA71537.1| Protein of unknown function DUF150 [Raphidiopsis brookii D9] Length = 163 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 1/147 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L I + P+ E+ V + + +L++ + + +L DCE++S+A+ Sbjct: 15 LVPQIIDLATPLAAELGLEVVGMVFHTNQCPPILRVDIRNPQQDTSLNDCEKMSRALESY 74 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD II Y LEVSSPGI R + +F+ + G V +++ G+++ Sbjct: 75 LDAAGIIPDTYVLEVSSPGISRQLETDREFISFKGFPVVVSTCDPDDGEKEWKGQLIRRD 134 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDS 166 ET +L ++ R + L + D Sbjct: 135 ETKIYLNQKGRVVGILRSLVTKVQLDD 161 >gi|302342323|ref|YP_003806852.1| hypothetical protein Deba_0888 [Desulfarculus baarsii DSM 2075] gi|301638936|gb|ADK84258.1| protein of unknown function DUF150 [Desulfarculus baarsii DSM 2075] Length = 161 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 77/157 (49%), Gaps = 11/157 (7%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + +I+PV+ V++ E +L++FV+R G +TL DC +S+ +S + Sbjct: 12 LGRRLMELIEPVVRSEGLVLVELQWRPENAGQVLRLFVDRPAGGVTLDDCSLISRQVSDL 71 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG--DKQKLIGKIMG 137 LDVE+ I G YRLEVSSPG++R + +++ + G + I + L G+++G Sbjct: 72 LDVEDPIGGAYRLEVSSPGLERRLKSAREYVIFAGRMAKLVIRDDGEKSGNRVLHGRLLG 131 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + R A ++ A L+V Sbjct: 132 LQGDDVLIEIDGR--------PTATPLAQVVKANLMV 160 >gi|160932905|ref|ZP_02080294.1| hypothetical protein CLOLEP_01746 [Clostridium leptum DSM 753] gi|156867979|gb|EDO61351.1| hypothetical protein CLOLEP_01746 [Clostridium leptum DSM 753] Length = 167 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 36/127 (28%), Positives = 69/127 (54%), Gaps = 4/127 (3%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISP 78 G + + +P++++ + L+E L+++++R +G +T+ DCE +S+AI Sbjct: 9 GTVEAVWDLCEPIVKDFGLELWDVRYLKEGAQWYLRVYIDRQEG-VTIEDCENVSRAIDE 67 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG-DKQKLIGKIMG 137 LD + ++ Y LEV SPG++R +VR F R+ G V +++ +++ G + G Sbjct: 68 PLDRLDPVDQSYCLEVCSPGLERELVRPEHFQRFEGWPVMVKLIRPLDSGEREFNGVL-G 126 Query: 138 TSETGFF 144 T E G F Sbjct: 127 TYENGVF 133 >gi|322386002|ref|ZP_08059642.1| protein of hypothetical function DUF150 [Streptococcus cristatus ATCC 51100] gi|321269985|gb|EFX52905.1| protein of hypothetical function DUF150 [Streptococcus cristatus ATCC 51100] Length = 164 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 75/157 (47%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + VI+P I+E + V I + + +L +FV++ +G +T+ D +L+ ISP+ Sbjct: 12 IVELVREVIEPAIQE-PYELVDIEYGKMGGDYVLSVFVDKPEG-ITVNDTADLTDIISPL 69 Query: 80 LDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LEV+SPG++RP+ K G + + + + G ++G Sbjct: 70 LDSIKPDPFPDQYFLEVTSPGLERPLKTKEAVAAAVGSYIHVSLYKALDKNKVFEGTLLG 129 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + +E + K ++ I ++ + ARL V Sbjct: 130 FEDDVLLMEYMDKTRKK----EVEIPYNLVSKARLAV 162 >gi|257463890|ref|ZP_05628276.1| putative cytoplasmic protein [Fusobacterium sp. D12] gi|317061419|ref|ZP_07925904.1| conserved hypothetical protein [Fusobacterium sp. D12] gi|313687095|gb|EFS23930.1| conserved hypothetical protein [Fusobacterium sp. D12] Length = 153 Score = 144 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 75/153 (49%), Gaps = 11/153 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPIL 80 I ++ P E++ V + +++ ++I+VE+ DG++ L DC LS I + Sbjct: 5 VQKIEKIVTPEAEKLGLSLVDVEYMQDGGYWYVRIYVEKLDGDVNLEDCANLSGNIEDAV 64 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D +I+ + LEVSSPGI+RP+ +++DF+R+ G + + +K+ + G ++ Sbjct: 65 DQ--LIDKKFFLEVSSPGIERPLKKEADFIRFTGEKIFVALKHKIHEKRNVEGILLAYEN 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 ++ ++ I F + + L+ Sbjct: 123 QT--------LLLEVEGEELQIPFSEVKKSHLV 147 >gi|182683485|ref|YP_001835232.1| hypothetical protein SPCG_0515 [Streptococcus pneumoniae CGSP14] gi|225858390|ref|YP_002739900.1| hypothetical protein SP70585_0612 [Streptococcus pneumoniae 70585] gi|182628819|gb|ACB89767.1| hypothetical protein SPCG_0515 [Streptococcus pneumoniae CGSP14] gi|225720853|gb|ACO16707.1| conserved hypothetical protein [Streptococcus pneumoniae 70585] Length = 183 Score = 144 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + V++PVIE F V I + +++L IFV++ +G +TL D +L++ ISP+ Sbjct: 31 IVELVREVVEPVIEA-PFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEMISPV 88 Query: 80 LDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LE++SPG++RP+ K G + + + ++ G ++ Sbjct: 89 LDTIKPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLA 148 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + K + I + + ARL V Sbjct: 149 FEEDELTMEYMDKTRKK----TVQIPYSLVSKARLAV 181 >gi|119511040|ref|ZP_01630160.1| hypothetical protein N9414_09856 [Nodularia spumigena CCY9414] gi|119464291|gb|EAW45208.1| hypothetical protein N9414_09856 [Nodularia spumigena CCY9414] Length = 153 Score = 144 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 12/158 (7%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L I + PV E+ V I ++ +L++ + + L DCE +S+A+ Sbjct: 5 LVPQIIDLATPVAAELGLEVVGIVFHTNQRPPVLRVDIRNSQQDTGLNDCERMSRALEAS 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD II Y LEVSSPGI R ++ +F+ + G V +Q+ IG+++ Sbjct: 65 LDAAEIIPDAYVLEVSSPGISRQLITDREFISFKGFPVIISTSQPYDGQQEWIGQLIRRD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 ET +L ++ R I I + ++ DE Sbjct: 125 ETTVYLNQKGRI--------IEIPRTLITR---VLLDE 151 >gi|259645133|sp|B1XI06|RIMP_SYNP2 RecName: Full=Ribosome maturation factor rimP Length = 153 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 L I + +P+ E+ V + K +L+I V + L DCE S+ + P Sbjct: 5 LIPRIVTCAEPIAAELGLEVVDVVFQTNKKPPVLRIDVRNLSQDTGLEDCERFSRLLDPQ 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 L+ + II G Y LEVSSPG DR + +F+ + G V + D+++ G + Sbjct: 65 LEAQEIIPGAYVLEVSSPGTDRNLTTDREFIAFRGFPVRVKTYAPYKDQKEWCGTLRERD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 E L + + IAI + + +L Sbjct: 125 EAAIHLNLKGKA--------IAIPRELVAKVQL 149 >gi|312898334|ref|ZP_07757724.1| conserved hypothetical protein [Megasphaera micronuciformis F0359] gi|310620253|gb|EFQ03823.1| conserved hypothetical protein [Megasphaera micronuciformis F0359] Length = 153 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 81/154 (52%), Gaps = 6/154 (3%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 + +S ++ +I V + + E++ L++F++++ G + L DC+ +S+ Sbjct: 1 MKRSDIEQLVSQEVETIIAGTDLELVDVEYVRERDWYLRVFIDKE-GGVGLEDCQAVSEK 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LDV++ I Y LEVSSPG+DR + + +DF+R+ V + L ++ Sbjct: 60 LSEFLDVKDPITDKYLLEVSSPGLDRILKKDTDFVRYKDRHVDVHFFTPYKGVKSLTARL 119 Query: 136 MGTSETGFF---LEKEKRG--EKDMNELQIAISF 164 +G ++G +++E KD++++++ I F Sbjct: 120 VGKDKSGVVHLLIDEEDAAIDSKDISQIRLHIDF 153 >gi|319939748|ref|ZP_08014105.1| ribosome maturation factor rimP [Streptococcus anginosus 1_2_62CV] gi|319811086|gb|EFW07397.1| ribosome maturation factor rimP [Streptococcus anginosus 1_2_62CV] Length = 162 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 73/157 (46%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + V++PVI+E + V I + + +L IFV++ G +T+ D +L+ ISP+ Sbjct: 10 IVELVKEVVEPVIQE-PYELVNIDYGKMGSDHVLSIFVDK-SGGITVNDTADLTDIISPL 67 Query: 80 LDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LEV+SPG++RP+ K G + + + + G ++ Sbjct: 68 LDTIKPDPFPEQYFLEVTSPGLERPLKTKEQLADAVGQYIHVSLYQAVDKSKTFEGTLLS 127 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + K + + I + + ARL V Sbjct: 128 FEEDHLTMEYMDKTRKKV----VQIPYKLVSKARLAV 160 >gi|300361903|ref|ZP_07058080.1| protein of hypothetical function DUF150 [Lactobacillus gasseri JV-V03] gi|300354522|gb|EFJ70393.1| protein of hypothetical function DUF150 [Lactobacillus gasseri JV-V03] Length = 172 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 73/159 (45%), Gaps = 7/159 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 + ++ V+ P+ E V + ++EK L+I+V+R G + + + LS+ +S Sbjct: 16 TKVTELVADVVTPLAEARGDELVDVEYVKEKKQYYLRIYVDRRPGGIDIEEIANLSELVS 75 Query: 78 PILDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + Y LE+SSPG++RP+ + D+ R G + + ++ G + Sbjct: 76 EKLDELDPDPFPEPYILELSSPGLERPIKNEKDWERAKGSYIHVSLYQKIDGEKTYEGTL 135 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ LE + + + +I I ++ S+R V Sbjct: 136 KDLNQDQIVLEVKIKTRRK----EITIPRKTIASSRFAV 170 >gi|163815207|ref|ZP_02206584.1| hypothetical protein COPEUT_01365 [Coprococcus eutactus ATCC 27759] gi|158449402|gb|EDP26397.1| hypothetical protein COPEUT_01365 [Coprococcus eutactus ATCC 27759] Length = 129 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 69/133 (51%), Gaps = 9/133 (6%) Query: 42 QISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGID 100 + ++E + L+++ +++ G +T+ DCE +++A+ +LD E+ I Y LEVSSPG+ Sbjct: 2 DVEYVKEGSDYYLRVYADKE-GGITINDCEIVNRALGDLLDQEDYISDAYILEVSSPGLT 60 Query: 101 RPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQI 160 RP+ +++DF R G VV + + ++ G + + +E E E ++ Sbjct: 61 RPLKKENDFKRSIGKVVEIKTFVKINGAKEFEGVLKAYDDATVTIEFED-------ETEV 113 Query: 161 AISFDSLLSARLI 173 IS + RL Sbjct: 114 TISRKDISMIRLA 126 >gi|315652149|ref|ZP_07905147.1| protein of hypothetical function DUF150 [Eubacterium saburreum DSM 3986] gi|315485641|gb|EFU76025.1| protein of hypothetical function DUF150 [Eubacterium saburreum DSM 3986] Length = 166 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 6/148 (4%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++ + E+ F V I ++E L+++ + DG + + DC E+S+ +S L Sbjct: 20 VKRTEEFLEKLSSELKFELVDIEFVKEAGEYYLRVYCDM-DGGIGIEDCAEISRHLSDWL 78 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D E+ I+ Y LEVSSPG+ R + + DFLR G V ++ + + G + Sbjct: 79 DEEDFIDEGYILEVSSPGLGRTLKKDKDFLRELGKEVELKLYKARDGVKDFEGVLKSFDG 138 Query: 141 TGFFLEKEKRGE----KDMNELQIAISF 164 +E E + E K++ +++ I F Sbjct: 139 ENITVETEVKDEVFTKKEIANIRLKIDF 166 >gi|313906215|ref|ZP_07839561.1| protein of unknown function DUF150 [Eubacterium cellulosolvens 6] gi|313468945|gb|EFR64301.1| protein of unknown function DUF150 [Eubacterium cellulosolvens 6] Length = 157 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 34/129 (26%), Positives = 64/129 (49%), Gaps = 3/129 (2%) Query: 36 MSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEV 94 M++ V + ++E L+ + +++ G +T+ DCE +S+A LD ++IE Y LEV Sbjct: 23 MNYEFVDLEYVKEAGTWYLRAYADKE-GGITVDDCEIISRAFEEKLDAADLIEEAYILEV 81 Query: 95 SSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFL-EKEKRGEK 153 SSPG+ RP+ ++ D++R G V +++ G + + + E E Sbjct: 82 SSPGLGRPLKKERDYVRAMGQRVEIRTYKIINHEKEFTGVLQAYDDQSVTIVSDEDEQEM 141 Query: 154 DMNELQIAI 162 + IA+ Sbjct: 142 IFQKPDIAL 150 >gi|168492709|ref|ZP_02716852.1| conserved hypothetical protein [Streptococcus pneumoniae CDC3059-06] gi|183576817|gb|EDT97345.1| conserved hypothetical protein [Streptococcus pneumoniae CDC3059-06] Length = 159 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 42/157 (26%), Positives = 76/157 (48%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + V++PVIE F V I + +++L IFV++ +G +TL D +L++ ISP+ Sbjct: 7 IVELVREVVEPVIEA-PFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEIISPV 64 Query: 80 LDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LE++SPG++RP+ K G + + + ++ G ++ Sbjct: 65 LDTIKPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLA 124 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E G +E + K + I + + ARL V Sbjct: 125 FEEDGLTMEYMDKTRKK----TVQIPYSLVSKARLAV 157 >gi|157151233|ref|YP_001449858.1| hypothetical protein SGO_0542 [Streptococcus gordonii str. Challis substr. CH1] gi|259586201|sp|A8AVP8|RIMP_STRGC RecName: Full=Ribosome maturation factor rimP gi|157076027|gb|ABV10710.1| conserved hypothetical protein [Streptococcus gordonii str. Challis substr. CH1] Length = 162 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + +++VI+P I F V + + + +L +FV++ +G +T+ D +L+ ISP+ Sbjct: 10 IVELVTAVIEPAITA-PFELVDVEYGKIGSDYVLSVFVDKPEG-ITVNDTADLTDIISPL 67 Query: 80 LDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LEV+SPG++RP+ K G + + S ++ G ++ Sbjct: 68 LDTIKPDPFPEQYFLEVTSPGLERPLKTKEQVEAAVGQYIHVGLYKSLDKQKVFEGTLLQ 127 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E LE + K +I I + + ARL V Sbjct: 128 FKEDVLTLEYMDKTRKK----EIDIPYSLVSKARLAV 160 >gi|257453567|ref|ZP_05618857.1| hypothetical protein ENHAE0001_1621 [Enhydrobacter aerosaccus SK60] gi|257449025|gb|EEV23978.1| hypothetical protein ENHAE0001_1621 [Enhydrobacter aerosaccus SK60] Length = 169 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 79/163 (48%), Gaps = 14/163 (8%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFV-----ERDDG-NMTLRDCEELSQ 74 +++ +I+P + I + + + LL+I++ +R +G +T+ DC ++ Sbjct: 7 VAELTQIIEPAVTACDVSLWGIEFVPQGRRSLLRIYIEALPEDRAEGKQVTIEDCAAVTH 66 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS----GDKQK 130 + +LD+ + I G Y LEVSSPG+DR + G ++ ++ + ++K Sbjct: 67 QVGGVLDLHDPIAGEYLLEVSSPGLDRAFFSAEQLHDYVGQTISLRLIHAIGQGSDKRRK 126 Query: 131 LIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + G+++ E ++ E +N+ +AI D++ A L+ Sbjct: 127 VTGELVNIDERQLTVKTEN---DQVNDQLLAIELDNIDKANLV 166 >gi|328953956|ref|YP_004371290.1| Ribosome maturation factor rimP [Desulfobacca acetoxidans DSM 11109] gi|328454280|gb|AEB10109.1| Ribosome maturation factor rimP [Desulfobacca acetoxidans DSM 11109] Length = 153 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 40/154 (25%), Positives = 76/154 (49%), Gaps = 10/154 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + G ++ +I PV++ V+ + + +L++F+++ G ++L DC LS + Sbjct: 5 DVTGRVTELILPVLQAHDVELVETEFVRAGRRYILRLFLDKP-GGISLEDCAYLSNLLGE 63 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 ++DV ++I Y LEVSSPG+ RP+ + DF R+ G +V + G + G+++G Sbjct: 64 LIDVHDVIRHAYILEVSSPGLTRPIKKIEDFSRYAGRLVRITVRGGVGKRSLYRGELLGL 123 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +++ R AI + ARL Sbjct: 124 DGETVKVKEGSRVY--------AIPVKDIARARL 149 >gi|307579212|gb|ADN63181.1| hypothetical protein XFLM_06240 [Xylella fastidiosa subsp. fastidiosa GB514] Length = 176 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 85/156 (54%), Gaps = 12/156 (7%) Query: 24 DISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVE-----RDDGNMTLRDCEELSQAIS 77 +I +++ P +E + F + L +L+++++ + + +++ DCE +S+ +S Sbjct: 7 EIVNLLAPKVEMLGFDLLGAEYLLVPSGAILRLYIDIPFAMQPECMVSIDDCERVSREVS 66 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD+E I G+Y LEVSSPG+DR + F R + H+V + L ++L GKI+ Sbjct: 67 AYLDLEEPISGNYTLEVSSPGLDRRLFTLEQFARHHNHLVKVGLKLQQHGSRRLQGKIVR 126 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + G F+ +N +++A+ F+++ AR++ Sbjct: 127 VEQVGGFV------VLLVNGVELAVDFNNIDKARIV 156 >gi|326803577|ref|YP_004321395.1| hypothetical protein HMPREF9243_1141 [Aerococcus urinae ACS-120-V-Col10a] gi|326650272|gb|AEA00455.1| conserved hypothetical protein [Aerococcus urinae ACS-120-V-Col10a] Length = 157 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 42/157 (26%), Positives = 79/157 (50%), Gaps = 8/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + ++I+ I EM ++ I+ +E K+ L+I+++ +DG +T+ DC + S+ IS I Sbjct: 4 VTDQVKALIEADINEMGYQLFDITFSKEGKDWYLRIYIDNNDG-ITIADCVKASEKISEI 62 Query: 80 LD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD ++ I Y LEVSSPG +RP+ + + G V + + G+++ Sbjct: 63 LDNVEDDPIPQAYYLEVSSPGAERPLNNDNAIQQAIGKWVHLNFYHEIDGSKFVEGRLLE 122 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 SE F LE + + + + + S+ RL + Sbjct: 123 ASEQYFTLEVKDKTRRLVQD----FPRKSVSLIRLAI 155 >gi|297170975|gb|ADI21990.1| uncharacterized protein conserved in bacteria [uncultured myxobacterium HF0200_01L06] Length = 170 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 77/156 (49%), Gaps = 11/156 (7%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVER--DDGNMTLRDCEELSQAIS 77 + ++ ++I+PV+E+ V +++ + +++I ++R + + + C E+S+ + Sbjct: 4 DIPEELRTLIEPVLEDHGCELVD-TIVLNRPKVVRIIIDRASEGRGVGIDLCAEISREVG 62 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD IEG YRLEVSSPG+ R + R+ DF G V +++ G+++ Sbjct: 63 TQLDAAEAIEGSYRLEVSSPGLHRVLSREKDFRAACGQNVNVTTKGLIDGRRRFNGQLLE 122 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + +++ +++ I FD + A L+ Sbjct: 123 FGD--------GLARVEVDGVRVGIPFDQIEKANLV 150 >gi|262282170|ref|ZP_06059939.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] gi|262262624|gb|EEY81321.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] Length = 162 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + +++VI+P I F V + + + +L +FV++ +G +T+ D +L+ ISP+ Sbjct: 10 IVELVTAVIEPAITA-PFELVDVEYGKIGSDYVLSVFVDKPEG-ITVNDTADLTDIISPL 67 Query: 80 LDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LEV+SPG++RP+ K G + + S ++ G ++ Sbjct: 68 LDTIKPDPFPEQYFLEVTSPGLERPLKTKEQVEAAVGQYIHVGLYKSLDKQKVFEGTLLQ 127 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + K +I I + + ARL V Sbjct: 128 FKEDVLTIEYMDKTRKK----EIDIPYSLVSKARLAV 160 >gi|56707227|ref|YP_169123.1| hypothetical protein FTT_0048 [Francisella tularensis subsp. tularensis SCHU S4] gi|110669697|ref|YP_666254.1| hypothetical protein FTF0048 [Francisella tularensis subsp. tularensis FSC198] gi|115315430|ref|YP_764153.1| hypothetical protein FTH_1748 [Francisella tularensis subsp. holarctica OSU18] gi|169656764|ref|YP_001429349.2| hypothetical protein FTA_1918 [Francisella tularensis subsp. holarctica FTNF002-00] gi|254375032|ref|ZP_04990512.1| conserved hypothetical protein [Francisella novicida GA99-3548] gi|254874066|ref|ZP_05246776.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis MA00-2987] gi|81598096|sp|Q5NIL9|RIMP_FRATT RecName: Full=Ribosome maturation factor rimP gi|122324584|sp|Q0BK68|RIMP_FRATO RecName: Full=Ribosome maturation factor rimP gi|123169692|sp|Q14K22|RIMP_FRAT1 RecName: Full=Ribosome maturation factor rimP gi|189030342|sp|A7NEJ0|RIMP_FRATF RecName: Full=Ribosome maturation factor rimP gi|56603719|emb|CAG44681.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110320030|emb|CAL08064.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC198] gi|115130329|gb|ABI83516.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica OSU18] gi|151572750|gb|EDN38404.1| conserved hypothetical protein [Francisella novicida GA99-3548] gi|164551832|gb|ABU62393.2| conserved hypothetical protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|254840065|gb|EET18501.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis MA00-2987] Length = 152 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 8/152 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L D+ +++P+ ++ + I ++ L ++IF++ ++G +++ DC+ +S+ IS + Sbjct: 4 LLDDLYEIVEPITADLGYILWGIEVVGSGKLTIRIFIDHENG-VSVDDCQIVSKEISAVF 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ + G Y LEVSSPG++R + G V + G + K G + Sbjct: 63 DVEDPVSGKYILEVSSPGMNRQIFNIIQAQALVGFNVKAVTLAPVGSQTKFKGVLERVEG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 L E E I+ FD L R+ Sbjct: 123 NNVILNLEDGKE-------ISFDFDELKKLRV 147 >gi|227890228|ref|ZP_04008033.1| protein of hypothetical function DUF150 [Lactobacillus johnsonii ATCC 33200] gi|227849230|gb|EEJ59316.1| protein of hypothetical function DUF150 [Lactobacillus johnsonii ATCC 33200] Length = 172 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 71/159 (44%), Gaps = 7/159 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 + ++ V+ P+ E V + ++EK L+I+V+R G + + + LS+ +S Sbjct: 16 TKVTELVADVVTPLAEARGDELVDVEYVKEKKQYYLRIYVDRRPGGIDIEEIANLSELVS 75 Query: 78 PILDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + Y LE+SSPG++RP+ + D+ R G + + ++ G + Sbjct: 76 EKLDELDPDPFPEPYILELSSPGLERPIKNEKDWERAKGSYIHVSLYQKIDGEKAFEGTL 135 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ LE + + + I I + S+R V Sbjct: 136 KDLNQDQIVLEVKIKTRRKY----ITIPRKVIASSRFAV 170 >gi|309799812|ref|ZP_07694019.1| conserved hypothetical protein [Streptococcus infantis SK1302] gi|308116528|gb|EFO53997.1| conserved hypothetical protein [Streptococcus infantis SK1302] Length = 159 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + V++PVIE F V I + +++L IFV++ +G +TL D +L++ ISP+ Sbjct: 7 IVELVREVVEPVIEA-PFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEIISPV 64 Query: 80 LDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LE++SPG++RP+ K G + + + ++ G ++ Sbjct: 65 LDTIKPDPFPEQYFLEITSPGLERPLKTKEAVAGAVGKYIHVGLYQAIDKQKVFEGTLLA 124 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + K + I + + ARL V Sbjct: 125 FEEDELTMEYMDKTRKK----TVQIPYSLVSKARLAV 157 >gi|25010486|ref|NP_734881.1| hypothetical protein gbs0413 [Streptococcus agalactiae NEM316] gi|50403657|sp|P62599|RIMP_STRA5 RecName: Full=Ribosome maturation factor rimP gi|50403658|sp|P62600|RIMP_STRA3 RecName: Full=Ribosome maturation factor rimP gi|23094839|emb|CAD46057.1| unknown [Streptococcus agalactiae NEM316] Length = 159 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 69/163 (42%), Gaps = 9/163 (5%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELS 73 + + + ++ V+ P I+ F V + + + +L I +++ G +T+ D +L+ Sbjct: 1 MIANQTIVDIVTQVVTPAIQA-PFELVDVEYEKMGGDYVLSILIDKP-GGITVEDTAQLT 58 Query: 74 QAISPILDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +SP+LD + Y LEVSSPG++RP+ G + + S + Sbjct: 59 DVVSPLLDTIQPDPFPEQYMLEVSSPGLERPLKTAEALSNAVGSYINVSLYKSIDKVKIF 118 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G ++ ++ + + I + ++ ARL V Sbjct: 119 EGDLLSFDGETLTIDYMDKTRHK----TVDIPYQTVAKARLAV 157 >gi|291543556|emb|CBL16665.1| Uncharacterized protein conserved in bacteria [Ruminococcus sp. 18P13] Length = 158 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 75/157 (47%), Gaps = 10/157 (6%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEEL 72 ++ + + ++ P+ E + + +E + L++F+++D+G +++ DCE + Sbjct: 2 KLKKNGATEQKVYALAAPLAESLGLVIWDVRFEKEGASWYLRVFIDKDEG-ISIDDCEAM 60 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG-DKQKL 131 S+ +S +LD + I+ Y LEV S G++R +VR+S F G VV ++ +++ Sbjct: 61 SRPLSDLLDEADPIDQQYFLEVGSAGLERDLVRESHFAASIGAVVRMRLIRPDETGQKEY 120 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLL 168 +G + + L E + + F ++ Sbjct: 121 VGALESFDKEQVRLVLED-------DTTVTAPFANIA 150 >gi|89257074|ref|YP_514436.1| hypothetical protein FTL_1811 [Francisella tularensis subsp. holarctica LVS] gi|118498224|ref|YP_899274.1| hypothetical protein FTN_1662 [Francisella tularensis subsp. novicida U112] gi|134301262|ref|YP_001121230.1| hypothetical protein FTW_0124 [Francisella tularensis subsp. tularensis WY96-3418] gi|167009461|ref|ZP_02274392.1| hypothetical protein Ftulh_01737 [Francisella tularensis subsp. holarctica FSC200] gi|194324408|ref|ZP_03058181.1| conserved hypothetical protein [Francisella tularensis subsp. novicida FTE] gi|208780251|ref|ZP_03247593.1| conserved hypothetical protein [Francisella novicida FTG] gi|224456288|ref|ZP_03664761.1| hypothetical protein FtultM_00215 [Francisella tularensis subsp. tularensis MA00-2987] gi|290954350|ref|ZP_06558971.1| hypothetical protein FtulhU_09047 [Francisella tularensis subsp. holarctica URFT1] gi|295312214|ref|ZP_06803014.1| hypothetical protein FtulhU_09034 [Francisella tularensis subsp. holarctica URFT1] gi|122500220|sp|Q2A1G6|RIMP_FRATH RecName: Full=Ribosome maturation factor rimP gi|226696298|sp|A4IW08|RIMP_FRATW RecName: Full=Ribosome maturation factor rimP gi|226736401|sp|A0Q8F5|RIMP_FRATN RecName: Full=Ribosome maturation factor rimP gi|89144905|emb|CAJ80250.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica LVS] gi|118424130|gb|ABK90520.1| conserved protein of unknown function [Francisella novicida U112] gi|134049039|gb|ABO46110.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis WY96-3418] gi|194321473|gb|EDX18958.1| conserved hypothetical protein [Francisella tularensis subsp. novicida FTE] gi|208743900|gb|EDZ90202.1| conserved hypothetical protein [Francisella novicida FTG] gi|282158335|gb|ADA77726.1| hypothetical protein NE061598_00270 [Francisella tularensis subsp. tularensis NE061598] gi|332678960|gb|AEE88089.1| clustered with transcription termination protein NusA [Francisella cf. novicida Fx1] Length = 150 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 8/152 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L D+ +++P+ ++ + I ++ L ++IF++ ++G +++ DC+ +S+ IS + Sbjct: 2 LLDDLYEIVEPITADLGYILWGIEVVGSGKLTIRIFIDHENG-VSVDDCQIVSKEISAVF 60 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ + G Y LEVSSPG++R + G V + G + K G + Sbjct: 61 DVEDPVSGKYILEVSSPGMNRQIFNIIQAQALVGFNVKAVTLAPVGSQTKFKGVLERVEG 120 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 L E E I+ FD L R+ Sbjct: 121 NNVILNLEDGKE-------ISFDFDELKKLRV 145 >gi|62263138|gb|AAX78134.1| unknown protein [synthetic construct] Length = 187 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 74/164 (45%), Gaps = 8/164 (4%) Query: 9 SKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRD 68 + + L D+ +++P+ ++ + I ++ L ++IF++ ++G +++ D Sbjct: 18 DDDDKHMLEVKMLLDDLYEIVEPITADLGYILWGIEVVGSGKLTIRIFIDHENG-VSVDD 76 Query: 69 CEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 C+ +S+ IS + DVE+ + G Y LEVSSPG++R + G V + G + Sbjct: 77 CQIVSKEISAVFDVEDPVSGKYILEVSSPGMNRQIFNIIQAQALVGFNVKAVTLAPVGSQ 136 Query: 129 QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 K G + L E E I+ FD L R+ Sbjct: 137 TKFKGVLERVEGNNVILNLEDGKE-------ISFDFDELKKLRV 173 >gi|293610133|ref|ZP_06692434.1| hypothetical protein HMPREF0013_02285 [Acinetobacter sp. SH024] gi|292827365|gb|EFF85729.1| hypothetical protein HMPREF0013_02285 [Acinetobacter sp. SH024] gi|325124306|gb|ADY83829.1| hypothetical protein BDGL_003243 [Acinetobacter calcoaceticus PHEA-2] Length = 174 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 41/175 (23%), Positives = 78/175 (44%), Gaps = 23/175 (13%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVER-----------DDG----- 62 + + +I P +E I L + K LL+I++++ +DG Sbjct: 5 NKSQALHDLIVPAVEACGVDLWGIEFLPQGKRSLLRIYIDKAVSEDAEPVINEDGEVELG 64 Query: 63 -NMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 + ++DC ++Q + +LDV + I G Y LEVSSPG DRP + + G +A + Sbjct: 65 RGIGVQDCVRVTQQVGAMLDVHDPISGEYSLEVSSPGWDRPFFQLEQLQGYIGQQIALRL 124 Query: 122 VLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 + + +++K K++ ++ E G+ + I +++ A LI D Sbjct: 125 IAAVENRRKFQAKLIAVDLENEEIQVEVDGKH-----VLVIDSNNIDKANLIYQD 174 >gi|237739229|ref|ZP_04569710.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31] gi|229422837|gb|EEO37884.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31] Length = 156 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 76/156 (48%), Gaps = 11/156 (7%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAI 76 + + I+ ++ P +EEM+ V + L++ +++F+E +G++++ DC +LS I Sbjct: 4 NSQIIEKITKIVNPFVEEMNLSLVDVEYLQDGGYWYVRVFIENLNGDLSIEDCSKLSSKI 63 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 VE +IE + LEVSSPG++R + + D++R+ G + + DK++ I Sbjct: 64 EDK--VEELIEHKFFLEVSSPGLERALKKLEDYIRFTGEKITLHLKHKLNDKKQFKAVIK 121 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +K+ ++ I F + A + Sbjct: 122 EVKGDNIVFLIDKK--------EVEIEFKEIRKANI 149 >gi|189485236|ref|YP_001956177.1| hypothetical protein TGRD_233 [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|259645130|sp|B1GZN4|RIMP_UNCTG RecName: Full=Ribosome maturation factor rimP gi|170287195|dbj|BAG13716.1| conserved hypothetical protein [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 151 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 66/155 (42%), Gaps = 9/155 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M +I ++ PV V + + + + +IF+++D G +T+ DCE +S Sbjct: 1 MRKVQEIEDLLAPVAAREKIEIVDVQYSKKAGDWVARIFIDKDSG-VTISDCENISCIFG 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD +I++ Y LE+SSPG R + + F R+ G +++ +G ++ Sbjct: 60 AFLDESDILKDSYVLEISSPGFKRVLKSEKSFRRFIGSKTRIRTFKPINNQRNFLGTLLN 119 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + D+ + I F + A + Sbjct: 120 FDDGRIKIN-------DVTNGVVEIEFSDIRKANI 147 >gi|241889857|ref|ZP_04777155.1| conserved hypothetical protein [Gemella haemolysans ATCC 10379] gi|241863479|gb|EER67863.1| conserved hypothetical protein [Gemella haemolysans ATCC 10379] Length = 154 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 69/157 (43%), Gaps = 6/157 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 M + + ++ E F + ++E L+I+ ++ DG +TL DC LS+ ++ Sbjct: 1 MSIVEKVKAIATKQAENTEFSLYDVEYVKEGTEYFLRIYFDK-DGGLTLDDCVLLSEKLA 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD E+ I Y LEVSSPGI+R + + G V + ++++ G I+ Sbjct: 60 EELDKEDFISDKYYLEVSSPGIERDLRDLEEVTNSVGKHVYIKTYEKIDNQKEFYGDILA 119 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + + + I++ + RL V Sbjct: 120 VEGEEITVEYKDKARVKKS----TINYSKIAKIRLAV 152 >gi|116629467|ref|YP_814639.1| hypothetical protein LGAS_0810 [Lactobacillus gasseri ATCC 33323] gi|116095049|gb|ABJ60201.1| hypothetical protein LGAS_0810 [Lactobacillus gasseri ATCC 33323] Length = 172 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 72/159 (45%), Gaps = 7/159 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 + ++ V+ P+ E V + ++EK L+I+V+R G + + + LS+ +S Sbjct: 16 TKVTELVADVVTPLAEARGDELVDVEYVKEKKQYYLRIYVDRRPGGIDIEEIANLSELVS 75 Query: 78 PILDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + Y LE+SSPG++RP+ + D+ R G + + ++ G + Sbjct: 76 EKLDELDPDPFPEPYILELSSPGLERPIKNEKDWERAKGSYIHVSLYQKIDGEKTYEGTL 135 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ LE + + + +I I + S+R V Sbjct: 136 KDLNQNQIVLEVKIKTRRK----EITIPRKVIASSRFAV 170 >gi|71908072|ref|YP_285659.1| hypothetical protein Daro_2454 [Dechloromonas aromatica RCB] gi|91208406|sp|Q47D92|RIMP_DECAR RecName: Full=Ribosome maturation factor rimP gi|71847693|gb|AAZ47189.1| Protein of unknown function DUF150 [Dechloromonas aromatica RCB] Length = 146 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 79/152 (51%), Gaps = 13/152 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD--DGNMTLRDCEELSQAISPILD 81 D++++++ + + + V + + + +++F++ + + + DC ++S ++ + + Sbjct: 2 DLNTLLETTVVGLGYELVDVEMSP-RGRTIRVFIDAPAKETGIDVEDCAKVSNQLTRVFE 60 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VEN RLE+SSPG+DR + + +DF R++G + ++ + G ++ G+++G + Sbjct: 61 VENF--DFDRLEISSPGLDRVVKKAADFERFSGQEIQIKVRIPQGGRRNFQGELLGLKDG 118 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L K + + F ++ ARL+ Sbjct: 119 KVGLRLAKD--------DVELEFTNIEKARLV 142 >gi|325685947|gb|EGD28010.1| hypothetical protein HMPREF5505_0324 [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 176 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 70/153 (45%), Gaps = 7/153 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 I I+PVI V + ++EK L+I+V++ + + ELS+ + LD Sbjct: 26 ILEAIEPVIIGHDCELVDLEYVKEKSQYYLRIYVDKQPNGIDIETIAELSELVGEKLDSM 85 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + + Y LE+SSPG++RP+ ++ D+ + G + + ++ G ++ + Sbjct: 86 QPDPLPDPYILELSSPGLERPIKKEQDWEKAKGQYIHVGLYQKLEGEKVFEGHLLDLDDQ 145 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 LE + + + Q+ I + SAR + Sbjct: 146 EIKLEIKIKTRRK----QLTIPRKQIASARFAI 174 >gi|262280757|ref|ZP_06058540.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] gi|262257657|gb|EEY76392.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] Length = 174 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 41/175 (23%), Positives = 79/175 (45%), Gaps = 23/175 (13%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVER-----------DDG----- 62 + + +I P ++ I L + K LL+I++++ +DG Sbjct: 5 NKSQALHDLIVPAVQACGVDLWGIEFLPQGKRSLLRIYIDKAVSEDAEPVLDEDGEVEQG 64 Query: 63 -NMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 + ++DC ++Q + +LDV + I G Y LEVSSPG DRP + + G +A + Sbjct: 65 RGIGVQDCVRVTQQVGAMLDVHDPISGEYSLEVSSPGWDRPFFQLEQLQGYIGQQIALRL 124 Query: 122 VLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 + + +++K K++ LE E+ + + + I +++ A LI D Sbjct: 125 IAAVENRRKFQAKLIAVD-----LENEEIQVEVDGQHVLEIDSNNIDKANLIYQD 174 >gi|282898606|ref|ZP_06306594.1| protein of unknown function DUF150 [Cylindrospermopsis raciborskii CS-505] gi|281196474|gb|EFA71383.1| protein of unknown function DUF150 [Cylindrospermopsis raciborskii CS-505] Length = 164 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 1/147 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L I + P+ E+ V + ++ +L++ + + +L DCE++S+A+ Sbjct: 16 LVPQIIDLATPLAAELGLEVVGMVFHTNQRPPILRVDIRNPQQDTSLNDCEKMSRALETS 75 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD II Y LEVSSPGI R + +F+ + G V +++ G+++ Sbjct: 76 LDAAEIILDTYVLEVSSPGISRELATDREFISFKGFPVVVSTCDPDDGEKEWKGQLIRRD 135 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDS 166 ET +L ++ R + L + D Sbjct: 136 ETKIYLNQKGRVVGILRSLVTKVQLDD 162 >gi|17231320|ref|NP_487868.1| hypothetical protein alr3828 [Nostoc sp. PCC 7120] gi|34222944|sp|Q8YQJ5|RIMP_ANASP RecName: Full=Ribosome maturation factor rimP gi|17132962|dbj|BAB75527.1| alr3828 [Nostoc sp. PCC 7120] Length = 153 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 9/150 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L I+ + PV E++ V I ++ +L+I + + L DCE +S+A+ Sbjct: 5 LVPPITDLAIPVAEQLGLEVVGIVFHTNQRPPVLRIDIRNPQQDTGLDDCERMSRALEAA 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD II Y LEVSSPGI R +V +F+ + G V ++Q+ IG+++ Sbjct: 65 LDATEIIPDAYVLEVSSPGISRQLVTDREFISFKGFPVIVSTSPPHEEQQEWIGQLIRRD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLS 169 ET ++ ++ R I I + Sbjct: 125 ETKVYINQKGRV--------IEIPRPLITR 146 >gi|329767073|ref|ZP_08258601.1| hypothetical protein HMPREF0428_00298 [Gemella haemolysans M341] gi|328837798|gb|EGF87423.1| hypothetical protein HMPREF0428_00298 [Gemella haemolysans M341] Length = 154 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 69/157 (43%), Gaps = 6/157 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 M + + ++ E F + ++E L+I+ ++ DG ++L DC LS+ ++ Sbjct: 1 MSIVEKVKTIATKQTENTEFSLYDVEYVKEGTEYFLRIYFDK-DGGLSLDDCVLLSEKLA 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD E+ I Y LEVSSPGI+R + + G V + ++++ G I+ Sbjct: 60 EELDKEDFISDKYYLEVSSPGIERDLRNLEEVTNSVGKHVYIKTYEKIDNQKEFYGDILA 119 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + + + I++ + RL V Sbjct: 120 VEGEEITVEYKDKARVKKS----TINYSKIAKIRLAV 152 >gi|269123543|ref|YP_003306120.1| hypothetical protein Smon_0773 [Streptobacillus moniliformis DSM 12112] gi|268314869|gb|ACZ01243.1| protein of unknown function DUF150 [Streptobacillus moniliformis DSM 12112] Length = 164 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 82/165 (49%), Gaps = 12/165 (7%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDV 82 I IQP + E S I + E L+I+VE +GN +L DC LS I I+D Sbjct: 7 KIEKEIQPYLNENSLELADIEYVREGGYNFLRIYVESKNGNTSLDDCVMLSTKIDNIVDE 66 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 +I+ + LEVS+PG++R + ++ DF+R+ G ++ + + +K+ G ++G Sbjct: 67 --LIDDKFYLEVSTPGLERKLKKEKDFIRFTGKKISVKTKSNVENKKSFEGILLGFENGK 124 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLI--VTDELLRASLNN 185 + KD + I + + A+L+ ++D++ + + N Sbjct: 125 ILI-------KDDIIENVEIPLEKIKVAKLVFNLSDKIFKEDVEN 162 >gi|329769655|ref|ZP_08261059.1| hypothetical protein HMPREF0433_00823 [Gemella sanguinis M325] gi|328838410|gb|EGF88019.1| hypothetical protein HMPREF0433_00823 [Gemella sanguinis M325] Length = 154 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 73/157 (46%), Gaps = 6/157 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 M + + S+ +++ ++ + ++E + L+++ ++ DG ++L DC LS+ ++ Sbjct: 1 MSIVQKVKSIATEQVKDSNYSLYDVEYVKEGSDYFLRVYFDK-DGGLSLDDCVLLSERLA 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD E+ I Y LEVSSPGI+R + + G V + ++++ G I+ Sbjct: 60 EELDKEDFISDKYYLEVSSPGIERDLRDLEEVSNSVGKHVYIKTYEKIDNQKEFYGDIIS 119 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + + + + ++ + RL V Sbjct: 120 VDGDEITIEYKDKARVKKS----VVKYEKIAKIRLAV 152 >gi|148983930|ref|ZP_01817249.1| hypothetical protein CGSSp3BS71_07349 [Streptococcus pneumoniae SP3-BS71] gi|148990070|ref|ZP_01821324.1| hypothetical protein CGSSp6BS73_05420 [Streptococcus pneumoniae SP6-BS73] gi|148992338|ref|ZP_01822061.1| hypothetical protein CGSSp9BS68_06575 [Streptococcus pneumoniae SP9-BS68] gi|148998225|ref|ZP_01825694.1| hypothetical protein CGSSp11BS70_03456 [Streptococcus pneumoniae SP11-BS70] gi|168485663|ref|ZP_02710171.1| conserved hypothetical protein [Streptococcus pneumoniae CDC1087-00] gi|168490558|ref|ZP_02714701.1| conserved hypothetical protein [Streptococcus pneumoniae CDC0288-04] gi|168576546|ref|ZP_02722420.1| conserved hypothetical protein [Streptococcus pneumoniae MLV-016] gi|225854093|ref|YP_002735605.1| hypothetical protein SPJ_0512 [Streptococcus pneumoniae JJA] gi|225856262|ref|YP_002737773.1| hypothetical protein SPP_0569 [Streptococcus pneumoniae P1031] gi|225860557|ref|YP_002742066.1| hypothetical protein SPT_0582 [Streptococcus pneumoniae Taiwan19F-14] gi|237650176|ref|ZP_04524428.1| hypothetical protein SpneC1_05532 [Streptococcus pneumoniae CCRI 1974] gi|237821776|ref|ZP_04597621.1| hypothetical protein SpneC19_05602 [Streptococcus pneumoniae CCRI 1974M2] gi|298230908|ref|ZP_06964589.1| hypothetical protein SpneCMD_09588 [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255626|ref|ZP_06979212.1| hypothetical protein SpneCM_08527 [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502346|ref|YP_003724286.1| hypothetical protein HMPREF0837_10844 [Streptococcus pneumoniae TCH8431/19A] gi|303255253|ref|ZP_07341326.1| hypothetical protein CGSSpBS455_07226 [Streptococcus pneumoniae BS455] gi|307709806|ref|ZP_07646257.1| conserved hypothetical protein [Streptococcus mitis SK564] gi|254806452|sp|C1CCT4|RIMP_STRZJ RecName: Full=Ribosome maturation factor rimP gi|254806512|sp|C1CJ35|RIMP_STRZP RecName: Full=Ribosome maturation factor rimP gi|254806519|sp|C1CQ44|RIMP_STRZT RecName: Full=Ribosome maturation factor rimP gi|259586203|sp|C1C5S4|RIMP_STRP7 RecName: Full=Ribosome maturation factor rimP gi|259586204|sp|B2IME0|RIMP_STRPS RecName: Full=Ribosome maturation factor rimP gi|147755868|gb|EDK62912.1| hypothetical protein CGSSp11BS70_03456 [Streptococcus pneumoniae SP11-BS70] gi|147924077|gb|EDK75189.1| hypothetical protein CGSSp3BS71_07349 [Streptococcus pneumoniae SP3-BS71] gi|147924596|gb|EDK75683.1| hypothetical protein CGSSp6BS73_05420 [Streptococcus pneumoniae SP6-BS73] gi|147928964|gb|EDK79976.1| hypothetical protein CGSSp9BS68_06575 [Streptococcus pneumoniae SP9-BS68] gi|183571099|gb|EDT91627.1| conserved hypothetical protein [Streptococcus pneumoniae CDC1087-00] gi|183574915|gb|EDT95443.1| conserved hypothetical protein [Streptococcus pneumoniae CDC0288-04] gi|183577690|gb|EDT98218.1| conserved hypothetical protein [Streptococcus pneumoniae MLV-016] gi|225722728|gb|ACO18581.1| conserved hypothetical protein [Streptococcus pneumoniae JJA] gi|225725938|gb|ACO21790.1| conserved hypothetical protein [Streptococcus pneumoniae P1031] gi|225727228|gb|ACO23079.1| conserved hypothetical protein [Streptococcus pneumoniae Taiwan19F-14] gi|298237941|gb|ADI69072.1| protein of hypothetical function DUF150 [Streptococcus pneumoniae TCH8431/19A] gi|301799609|emb|CBW32164.1| conserved hypothetical protein [Streptococcus pneumoniae OXC141] gi|301801433|emb|CBW34120.1| conserved hypothetical protein [Streptococcus pneumoniae INV200] gi|302597794|gb|EFL64867.1| hypothetical protein CGSSpBS455_07226 [Streptococcus pneumoniae BS455] gi|307619508|gb|EFN98633.1| conserved hypothetical protein [Streptococcus mitis SK564] gi|327390292|gb|EGE88633.1| hypothetical protein SPAR5_0534 [Streptococcus pneumoniae GA04375] gi|332076388|gb|EGI86851.1| hypothetical protein SPAR68_0575 [Streptococcus pneumoniae GA41301] gi|332202436|gb|EGJ16505.1| hypothetical protein SPAR69_0547 [Streptococcus pneumoniae GA41317] gi|332203717|gb|EGJ17784.1| hypothetical protein SPAR93_0588 [Streptococcus pneumoniae GA47368] Length = 159 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + V++PVIE F V I + +++L IFV++ +G +TL D +L++ ISP+ Sbjct: 7 IVELVREVVEPVIEA-PFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEMISPV 64 Query: 80 LDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LE++SPG++RP+ K G + + + ++ G ++ Sbjct: 65 LDTIKPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLA 124 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + K + I + + ARL V Sbjct: 125 FEEDELTMEYMDKTRKK----TVQIPYSLVSKARLAV 157 >gi|294783787|ref|ZP_06749111.1| conserved hypothetical protein [Fusobacterium sp. 1_1_41FAA] gi|294480665|gb|EFG28442.1| conserved hypothetical protein [Fusobacterium sp. 1_1_41FAA] Length = 156 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 11/156 (7%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAI 76 + + I+ ++ P +EEM+ V + L++ ++IF+E +G +++ DC +LS I Sbjct: 4 NSQIIEKITKIVNPFVEEMNLSLVDVEYLQDGGYWYVRIFIENLNGELSIEDCSKLSSKI 63 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 VE +IE + LEVSSPG++R + + D++R+ G + + DK++ I Sbjct: 64 EDK--VEELIEHKFFLEVSSPGLERALKKLEDYIRFTGEKITLHLKHKLNDKKQFKAVIK 121 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +K+ ++ I F + A + Sbjct: 122 EVKGDNIVFLIDKK--------EVEIEFKEIRKANI 149 >gi|187931004|ref|YP_001890988.1| protein Lpl2691 [Francisella tularensis subsp. mediasiatica FSC147] gi|226696222|sp|B2SEW5|RIMP_FRATM RecName: Full=Ribosome maturation factor rimP gi|187711913|gb|ACD30210.1| protein Lpl2691 [Francisella tularensis subsp. mediasiatica FSC147] Length = 150 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 8/152 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L D+ +++P+ ++ + I ++ L ++IF++ ++G +++ DC+ +S+ IS + Sbjct: 2 LLDDLYEIVEPITADLGYILWGIEVVGSGKLTIRIFIDHENG-VSVDDCQIVSKEISAVF 60 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ + G Y LEVSSPG++R + G V + G + K G + Sbjct: 61 DVEDPVSGKYILEVSSPGMNRQIFNIIQAQALVGFNVKAVTLAPVGSQTKFKGVLERVEG 120 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 L E E I+ FD L R+ Sbjct: 121 NSVILNLEDGKE-------ISFDFDELKKLRV 145 >gi|55820433|ref|YP_138875.1| hypothetical protein stu0340 [Streptococcus thermophilus LMG 18311] gi|55822317|ref|YP_140758.1| hypothetical protein str0340 [Streptococcus thermophilus CNRZ1066] gi|81559802|sp|Q5M1C3|RIMP_STRT1 RecName: Full=Ribosome maturation factor rimP gi|81560972|sp|Q5M5V9|RIMP_STRT2 RecName: Full=Ribosome maturation factor rimP gi|55736418|gb|AAV60060.1| conserved hypothetical protein [Streptococcus thermophilus LMG 18311] gi|55738302|gb|AAV61943.1| conserved hypothetical protein [Streptococcus thermophilus CNRZ1066] Length = 163 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 71/166 (42%), Gaps = 11/166 (6%) Query: 15 IFGDMGLAGDISSVIQPVIEEM---SFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCE 70 + ++ ++ I ++ V+ + V I + + +L + +++ G +T+ D Sbjct: 1 MCKEVIMSQKIIDLVTAVVAPAIPDPYELVDIEYEKIGSDYILSVLIDKP-GGITVEDTA 59 Query: 71 ELSQAISPILDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 +L++ ISP+LD + Y LEVSSPG++RP+ K G + + + Sbjct: 60 DLTEIISPLLDTIQPDPFPDQYMLEVSSPGLERPLKTKEALKNAVGQYINVSLYKAIDKI 119 Query: 129 QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + G ++ ++ + + I + ++ ARL V Sbjct: 120 KIFQGDLLAFDGETLTIDYLDKTRHK----TVEIPYQTVAKARLAV 161 >gi|228476573|ref|ZP_04061255.1| conserved hypothetical protein [Streptococcus salivarius SK126] gi|228251768|gb|EEK10833.1| conserved hypothetical protein [Streptococcus salivarius SK126] Length = 157 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 70/157 (44%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + +++V+ P I E + V I + + +L + +++ G +T+ D +L++ ISP+ Sbjct: 5 IIDLVTAVVAPAIPE-PYELVDIEYEKLGGDYVLSVLIDKP-GGITVEDTADLTEIISPL 62 Query: 80 LDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LEVSSPG++RP+ K G + + + + G ++ Sbjct: 63 LDTIQPDPFPDQYMLEVSSPGLERPLKTKEALTNAVGQYINVSLYKAIDKIKIFQGDLVA 122 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ + + I + ++ ARL V Sbjct: 123 FDGETLTIDYLDKTRHK----TVEIPYQTVAKARLAV 155 >gi|324991724|gb|EGC23656.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK353] Length = 177 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 72/157 (45%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + VI+P I + V I + + +L +FV++ +G +T+ D +L+ ISP+ Sbjct: 25 IVELVREVIEPAILA-PYELVDIEYGKMGGDYVLSVFVDKPEG-ITVNDTADLTDIISPL 82 Query: 80 LDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LEV+SPG++RP+ K G + + + ++ G ++ Sbjct: 83 LDQIKPDPFPEQYFLEVTSPGLERPLKTKEQLADAVGSYIHVSLYKAVDKQKVFEGTLLS 142 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + K ++ I + + ARL V Sbjct: 143 FEEDVLHMEYLDKTRKK----EVEIPYSLVSKARLAV 175 >gi|262066536|ref|ZP_06026148.1| conserved hypothetical protein [Fusobacterium periodonticum ATCC 33693] gi|291379770|gb|EFE87288.1| conserved hypothetical protein [Fusobacterium periodonticum ATCC 33693] Length = 156 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 11/156 (7%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAI 76 + + I+ ++ P +EEM+ V + L++ +++F+E +G +++ DC +LS I Sbjct: 4 NSQIIEKITKIVNPFVEEMNLSLVDVEYLQDGGYWYVRVFIENLNGELSIEDCSKLSSKI 63 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 VE +IE + LEVSSPG++R + + D++R+ G + + DK++ I Sbjct: 64 EDR--VEELIEHKFFLEVSSPGLERALKKLEDYIRFTGEKITLHLKHKMNDKKQFKAVIK 121 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +K+ ++ I F + A + Sbjct: 122 EVKGDNIVFLIDKK--------EVEIEFKEIRKANI 149 >gi|15900464|ref|NP_345068.1| hypothetical protein SP_0552 [Streptococcus pneumoniae TIGR4] gi|111657274|ref|ZP_01408040.1| hypothetical protein SpneT_02001512 [Streptococcus pneumoniae TIGR4] gi|149012574|ref|ZP_01833571.1| hypothetical protein CGSSp19BS75_10108 [Streptococcus pneumoniae SP19-BS75] gi|168488243|ref|ZP_02712442.1| conserved hypothetical protein [Streptococcus pneumoniae SP195] gi|194396782|ref|YP_002037213.1| hypothetical protein SPG_0498 [Streptococcus pneumoniae G54] gi|221231385|ref|YP_002510537.1| hypothetical protein SPN23F_04980 [Streptococcus pneumoniae ATCC 700669] gi|307710805|ref|ZP_07647233.1| conserved hypothetical protein [Streptococcus mitis SK321] gi|34222993|sp|Q97S61|RIMP_STRPN RecName: Full=Ribosome maturation factor rimP; AltName: Full=SP14.3 gi|226707643|sp|B5E262|RIMP_STRP4 RecName: Full=Ribosome maturation factor rimP gi|254806440|sp|B8ZM89|RIMP_STRPJ RecName: Full=Ribosome maturation factor rimP gi|14972026|gb|AAK74708.1| SP14.3 protein [Streptococcus pneumoniae TIGR4] gi|147763379|gb|EDK70316.1| hypothetical protein CGSSp19BS75_10108 [Streptococcus pneumoniae SP19-BS75] gi|183572963|gb|EDT93491.1| conserved hypothetical protein [Streptococcus pneumoniae SP195] gi|194356449|gb|ACF54897.1| hypothetical protein SPG_0498 [Streptococcus pneumoniae G54] gi|220673845|emb|CAR68348.1| conserved hypothetical protein [Streptococcus pneumoniae ATCC 700669] gi|301793756|emb|CBW36143.1| conserved hypothetical protein [Streptococcus pneumoniae INV104] gi|307617411|gb|EFN96583.1| conserved hypothetical protein [Streptococcus mitis SK321] gi|332074366|gb|EGI84842.1| hypothetical protein SPAR50_0547 [Streptococcus pneumoniae GA17570] gi|332204572|gb|EGJ18637.1| hypothetical protein SPAR120_0537 [Streptococcus pneumoniae GA47901] Length = 159 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + V++PVIE F V I + +++L IFV++ +G +TL D +L++ ISP+ Sbjct: 7 IVELVREVVEPVIEA-PFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEIISPV 64 Query: 80 LDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LE++SPG++RP+ K G + + + ++ G ++ Sbjct: 65 LDTIKPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLA 124 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + K + I + + ARL V Sbjct: 125 FEEDELTMEYMDKTRKK----TVQIPYSLVSKARLAV 157 >gi|171778094|ref|ZP_02919351.1| hypothetical protein STRINF_00186 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283076|gb|EDT48500.1| hypothetical protein STRINF_00186 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 146 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 69/150 (46%), Gaps = 9/150 (6%) Query: 28 VIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE--N 84 ++ P I+E F V + + + +L I +++ G +T+ D +L++ ISP+LD + Sbjct: 1 MVAPAIKE-PFELVDVEYGKMGSDYVLSILIDKP-GGITVNDTADLTEIISPLLDAIKPD 58 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEVSSPG++RP+ K + G V + + + G ++ Sbjct: 59 PFPEQYMLEVSSPGLERPLKTKEALEKALGSYVNVSLYKAIDKVKVFQGDLVAFDGETLT 118 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ + K + I + ++ ARL V Sbjct: 119 IDYLDKTRKK----TVEIPYSTVAKARLAV 144 >gi|229829177|ref|ZP_04455246.1| hypothetical protein GCWU000342_01262 [Shuttleworthia satelles DSM 14600] gi|229792340|gb|EEP28454.1| hypothetical protein GCWU000342_01262 [Shuttleworthia satelles DSM 14600] Length = 157 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 78/148 (52%), Gaps = 3/148 (2%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + P++E+ F V + ++E L+ ++++ G +T+ DC ++S+ ++ IL Sbjct: 8 EEKTEAFLLPILEKDGFSLVDVEYVKEGGQYYLRAYIDKP-GGITIDDCVDVSREMNEIL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D E+ I+G Y EVSSPG+ RP+ ++ DF R V + + +++ +G + S+ Sbjct: 67 DREDYIDGTYTFEVSSPGLGRPIRKERDFARNLDKEVEIKSYRAIDGEKEFLGLLRDYSK 126 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLL 168 +E E+ K E IA+ +++ Sbjct: 127 ADVTIESEEGIRKICRE-DIALIREAID 153 >gi|310658998|ref|YP_003936719.1| hypothetical protein CLOST_1694 [Clostridium sticklandii DSM 519] gi|308825776|emb|CBH21814.1| conserved protein of unknown function [Clostridium sticklandii] Length = 152 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 40/146 (27%), Positives = 78/146 (53%), Gaps = 5/146 (3%) Query: 21 LAGDISSVIQPVIEEM---SFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAI 76 +A + +I+ ++ +M F V + ++E + L+I++++ G M+L DC+ S I Sbjct: 1 MASKLELLIEGIVSDMITDPFELVDVEYVKEGSLKYLRIYIDK-QGKMSLDDCQHFSHLI 59 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 S LD + IE +Y LE+SSPG+DR + ++ DF+R G V ++ + ++ G ++ Sbjct: 60 SEKLDELDPIEENYMLEISSPGLDRHLKKEKDFIREKGKEVELKLFKAIDGVKEFEGTLV 119 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAI 162 G SE + +G + +A+ Sbjct: 120 GLSEDNEIEVQTSKGLMKFPKKNVAV 145 >gi|159162465|pdb|1IB8|A Chain A, Solution Structure And Function Of A Conserved Protein Sp14.3 Encoded By An Essential Streptococcus Pneumoniae Gene Length = 164 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + V++PVIE F V I + +++L IFV++ +G +TL D +L++ ISP+ Sbjct: 10 IVELVREVVEPVIEA-PFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEMISPV 67 Query: 80 LDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LE++SPG++RP+ K G + + + ++ G ++ Sbjct: 68 LDTIKPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLA 127 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + K + I + + ARL V Sbjct: 128 FEEDELTMEYMDKTRKK----TVQIPYSLVSKARLAV 160 >gi|322373935|ref|ZP_08048470.1| SP14.3 protein [Streptococcus sp. C150] gi|321277307|gb|EFX54377.1| SP14.3 protein [Streptococcus sp. C150] Length = 157 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 70/157 (44%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + +++V+ P I E + V I + + +L + +++ G +T+ D +L++ ISP+ Sbjct: 5 IVDLVTAVVAPAIPE-PYELVDIEYEKLGSDYVLSVLIDKP-GGITVEDTADLTEIISPL 62 Query: 80 LDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LEVSSPG++RP+ K G + + + + G ++ Sbjct: 63 LDTIQPDPFPDQYMLEVSSPGLERPLKTKEALTNAVGQYINVSLYKAIDKIKIFQGDLVA 122 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ + + I + ++ ARL V Sbjct: 123 FDGETLTIDYLDKTRHK----TVEIPYQTVAKARLAV 155 >gi|116627257|ref|YP_819876.1| hypothetical protein STER_0379 [Streptococcus thermophilus LMD-9] gi|122268140|sp|Q03M92|RIMP_STRTD RecName: Full=Ribosome maturation factor rimP gi|116100534|gb|ABJ65680.1| Uncharacterized protein conserved in bacteria [Streptococcus thermophilus LMD-9] gi|312277741|gb|ADQ62398.1| Ribosome maturation factor rimP [Streptococcus thermophilus ND03] Length = 157 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 70/157 (44%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + +++V+ P I + + V I + + +L + +++ G +T+ D +L++ ISP+ Sbjct: 5 IIDLVTAVVAPAIPD-PYELVDIEYEKIGSDYILSVLIDKP-GGITVEDTADLTEIISPL 62 Query: 80 LDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LEVSSPG++RP+ K G + + + + G ++ Sbjct: 63 LDTIQPDPFPDQYMLEVSSPGLERPLKTKEALKNAVGQYINVSLYKAIDKIKIFQGDLLA 122 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ + + I + ++ ARL V Sbjct: 123 FDGETLTIDYLDKTRHK----TVEIPYQTVAKARLAV 155 >gi|168482792|ref|ZP_02707744.1| conserved hypothetical protein [Streptococcus pneumoniae CDC1873-00] gi|303260041|ref|ZP_07346014.1| hypothetical protein CGSSp9vBS293_01125 [Streptococcus pneumoniae SP-BS293] gi|303261225|ref|ZP_07347173.1| hypothetical protein CGSSp14BS292_07790 [Streptococcus pneumoniae SP14-BS292] gi|303263890|ref|ZP_07349811.1| hypothetical protein CGSSpBS397_04757 [Streptococcus pneumoniae BS397] gi|303267074|ref|ZP_07352945.1| hypothetical protein CGSSpBS457_10002 [Streptococcus pneumoniae BS457] gi|303269289|ref|ZP_07355063.1| hypothetical protein CGSSpBS458_08806 [Streptococcus pneumoniae BS458] gi|172043720|gb|EDT51766.1| conserved hypothetical protein [Streptococcus pneumoniae CDC1873-00] gi|302637359|gb|EFL67846.1| hypothetical protein CGSSp14BS292_07790 [Streptococcus pneumoniae SP14-BS292] gi|302638736|gb|EFL69198.1| hypothetical protein CGSSpBS293_01125 [Streptococcus pneumoniae SP-BS293] gi|302641186|gb|EFL71559.1| hypothetical protein CGSSpBS458_08806 [Streptococcus pneumoniae BS458] gi|302643402|gb|EFL73678.1| hypothetical protein CGSSpBS457_10002 [Streptococcus pneumoniae BS457] gi|302646295|gb|EFL76521.1| hypothetical protein CGSSpBS397_04757 [Streptococcus pneumoniae BS397] Length = 175 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + V++PVIE F V I + +++L IFV++ +G +TL D +L++ ISP+ Sbjct: 23 IVELVREVVEPVIEA-PFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEMISPV 80 Query: 80 LDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LE++SPG++RP+ K G + + + ++ G ++ Sbjct: 81 LDTIKPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLA 140 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + K + I + + ARL V Sbjct: 141 FEEDELTMEYMDKTRKK----TVQIPYSLVSKARLAV 173 >gi|297180948|gb|ADI17151.1| uncharacterized protein conserved in bacteria [uncultured gamma proteobacterium HF0070_08D07] Length = 152 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 74/153 (48%), Gaps = 11/153 (7%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEE--KNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 +I S++ P IE + R + L NL + ++++ +DG +++ DC +S+ +S IL Sbjct: 6 ENIESLVAPTIEALGCRIWGVELQGGLKNNLKVVVYIDSEDG-ISVDDCATVSEHVSDIL 64 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D+E ++ Y LEVSSPG+DR + ++ F G + + ++KL G ++ + Sbjct: 65 DMEELVPSPYVLEVSSPGLDRILFKEQHFKESLGLKIDVRLNRPFEGRKKLTGVLLDYGD 124 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + I D++ RL+ Sbjct: 125 LELILRDKMGVRN--------IPVDAIRKVRLV 149 >gi|304439998|ref|ZP_07399891.1| protein of hypothetical function DUF150 [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371490|gb|EFM25103.1| protein of hypothetical function DUF150 [Peptoniphilus duerdenii ATCC BAA-1640] Length = 154 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 77/151 (50%), Gaps = 10/151 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 G+ ++ + V EE + V+++ + + L+ +F+ ++DG ++L DC+ +S+AI Sbjct: 6 GILSKLNEISTKVAEERGYEIVEVAYKKATPHSLVSVFIYKEDG-ISLDDCDTMSRAIEE 64 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LD E+IIE Y LEVSSPG+DRP+ + D R G +V ++ + G + Sbjct: 65 ELDKEDIIEESYYLEVSSPGLDRPIKTQDDLRRNKGKLVEAKLFAPLDGNKLYEGVLASY 124 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLS 169 ++ L+ E + ++ + S+ Sbjct: 125 TKDTVILDNEGK--------EVELPLKSISK 147 >gi|299771784|ref|YP_003733810.1| hypothetical protein AOLE_17760 [Acinetobacter sp. DR1] gi|298701872|gb|ADI92437.1| hypothetical protein AOLE_17760 [Acinetobacter sp. DR1] Length = 175 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 40/176 (22%), Positives = 78/176 (44%), Gaps = 24/176 (13%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVER------------DDG---- 62 + + +I P ++ I L + K LL+I++++ +DG Sbjct: 5 NKSQALHDLIVPAVQACGVDLWGIEFLPQGKRSLLRIYIDKAVSEEDAEPVLNEDGEVEL 64 Query: 63 --NMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 + ++DC ++Q + +LDV + I G Y LEVSSPG DRP + + G +A Sbjct: 65 GRGIGVQDCVRVTQQVGAMLDVHDPISGEYSLEVSSPGWDRPFFQLEQLQGYIGQQIALR 124 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 ++ + +++K K++ ++ E G+ + I +++ A LI D Sbjct: 125 LIAAVENRRKFQAKLIAVDLENEEIQVEVDGKH-----VLEIDSNNIDKANLIYQD 175 >gi|299144045|ref|ZP_07037125.1| 15 kDa protein [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518530|gb|EFI42269.1| 15 kDa protein [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 153 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 43/154 (27%), Positives = 72/154 (46%), Gaps = 10/154 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 L I ++ + E+ + V + + K+ LL IF+ + +G + + DC +S+ Sbjct: 1 MKKNDLIDKIKNIAEECSNEIGYEIVDVEYQVGNKHDLLSIFIYKKEG-IDINDCTNMSR 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 I ILD E+II+ Y LE+SSPG+DRP+ K D+ R G+ V ++ K+ + G Sbjct: 60 IIESILDKEDIIDKPYYLEISSPGLDRPLKTKDDYRRNVGNEVTVKLYAPLDGKKLIEGI 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLL 168 + E+ L E I I S+ Sbjct: 120 LENYDESIIILSVEDEK--------IEIPIKSIS 145 >gi|224373557|ref|YP_002607929.1| hypothetical protein NAMH_1540 [Nautilia profundicola AmH] gi|259585797|sp|B9L6E1|RIMP_NAUPA RecName: Full=Ribosome maturation factor rimP gi|223588517|gb|ACM92253.1| conserved hypothetical protein [Nautilia profundicola AmH] Length = 148 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 75/153 (49%), Gaps = 18/153 (11%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILD 81 +++ +I+ ++E+ I L EE ++++ + G ++L DC +++ ISPI D Sbjct: 4 SELNDIIKNIVEDNGCDLYDIELSEEGGHKYFRVYITKP-GGVSLNDCAKINNLISPIFD 62 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 +E+ +EG Y LEVSSPG++R + + F + G V D KL G++ + Sbjct: 63 IEDPVEGKYFLEVSSPGLERKLTKPEHFEKSIGEKVKVTT----NDGTKLKGELKSFIDN 118 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + KEK ++FD + A+ + Sbjct: 119 VAEIGKEK------------VNFDDIKKAKTYI 139 >gi|307707651|ref|ZP_07644132.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261] gi|322377699|ref|ZP_08052189.1| SP14.3 protein [Streptococcus sp. M334] gi|307616364|gb|EFN95556.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261] gi|321281464|gb|EFX58474.1| SP14.3 protein [Streptococcus sp. M334] Length = 159 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + V++PVI+ F V I + +++L IFV++ +G +TL D +L++ ISP+ Sbjct: 7 IVELVREVVEPVIQA-PFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEIISPV 64 Query: 80 LDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LE++SPG++RP+ K G + + + ++ G ++ Sbjct: 65 LDTIKPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLA 124 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + K + I + + ARL V Sbjct: 125 FEEDELTMEYMDKTRKK----TVQIPYSLVSKARLAV 157 >gi|224367579|ref|YP_002601742.1| hypothetical protein HRM2_04640 [Desulfobacterium autotrophicum HRM2] gi|259585763|sp|C0QHM0|RIMP_DESAH RecName: Full=Ribosome maturation factor rimP gi|223690295|gb|ACN13578.1| conserved hypothetical protein [Desulfobacterium autotrophicum HRM2] Length = 155 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 40/154 (25%), Positives = 74/154 (48%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I S+ +P+ F V + + + ++++I++++ G +TL DC +++ + I Sbjct: 11 IVTAIESIAEPLCIAEGFELVHVECVSDQGGMIVRIYLDKP-GGITLDDCVHMTRHLGDI 69 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +DVE YRLE+SSPG RP+ + +DF R+ G V E V G + K G + Sbjct: 70 IDVELEEISAYRLEISSPGAKRPLKKLADFERFLGSRVKVEAVEPIGGRLKFTGILSKVQ 129 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E +N + F+ + +RL Sbjct: 130 D--------GCVEVVVNNEPVVFHFEQISKSRLA 155 >gi|307702468|ref|ZP_07639423.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037] gi|307623962|gb|EFO02944.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037] Length = 159 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + V++PVI+ F V I + +++L IFV++ +G +TL D +L++ ISP+ Sbjct: 7 IVELVREVVEPVIQA-PFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEIISPV 64 Query: 80 LDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LE++SPG++RP+ K G + + + ++ G ++ Sbjct: 65 LDTIKPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLVS 124 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + K + I + + ARL V Sbjct: 125 FEEDELTMEYMDKTRKK----TVQIPYSLVSKARLAV 157 >gi|307705616|ref|ZP_07642468.1| conserved hypothetical protein [Streptococcus mitis SK597] gi|307620893|gb|EFN99977.1| conserved hypothetical protein [Streptococcus mitis SK597] Length = 159 Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + V++PVIE F V I + +++L IFV++ +G +TL D +L++ ISP+ Sbjct: 7 IVELVREVVEPVIEA-PFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEMISPV 64 Query: 80 LDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LE++SPG++RP+ K G + + + ++ G ++ Sbjct: 65 LDTIKPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLA 124 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + K + I + + ARL V Sbjct: 125 FEEEELTMEYMDKTRKK----TVQIPYSLVSKARLAV 157 >gi|300812571|ref|ZP_07092988.1| conserved hypothetical protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496444|gb|EFK31549.1| conserved hypothetical protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 158 Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 71/153 (46%), Gaps = 7/153 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 I I+PVI V + ++EK+ L+I+V++ + + ELS+ + LD Sbjct: 8 IQEAIEPVIIGHDCELVDLEYVKEKSQDYLRIYVDKQPNGIDIETIAELSELVGEKLDSM 67 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + + Y LE+SSPG++RP+ ++ D+ + G + + ++ G ++ + Sbjct: 68 QPDPLPDPYILELSSPGLERPIKKEQDWEKAKGQYIHVGLYQKLEGEKVFEGHLLDLDDQ 127 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 LE + + + Q+ I + SAR + Sbjct: 128 EIKLEIKIKTRRK----QLTIPRKQIASARFAI 156 >gi|15902521|ref|NP_358071.1| hypothetical protein spr0477 [Streptococcus pneumoniae R6] gi|116516675|ref|YP_815984.1| hypothetical protein SPD_0478 [Streptococcus pneumoniae D39] gi|149002223|ref|ZP_01827165.1| hypothetical protein CGSSp14BS69_01239 [Streptococcus pneumoniae SP14-BS69] gi|149005662|ref|ZP_01829401.1| hypothetical protein CGSSp18BS74_08855 [Streptococcus pneumoniae SP18-BS74] gi|149021507|ref|ZP_01835562.1| hypothetical protein CGSSp23BS72_06564 [Streptococcus pneumoniae SP23-BS72] gi|169833553|ref|YP_001694039.1| hypothetical protein SPH_0649 [Streptococcus pneumoniae Hungary19A-6] gi|307126755|ref|YP_003878786.1| hypothetical protein SP670_0615 [Streptococcus pneumoniae 670-6B] gi|34222871|sp|Q8DQV6|RIMP_STRR6 RecName: Full=Ribosome maturation factor rimP gi|122279130|sp|Q04LW4|RIMP_STRP2 RecName: Full=Ribosome maturation factor rimP gi|226707991|sp|B1IA76|RIMP_STRPI RecName: Full=Ribosome maturation factor rimP gi|15458047|gb|AAK99281.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] gi|116077251|gb|ABJ54971.1| conserved hypothetical protein [Streptococcus pneumoniae D39] gi|147759538|gb|EDK66529.1| hypothetical protein CGSSp14BS69_01239 [Streptococcus pneumoniae SP14-BS69] gi|147762602|gb|EDK69562.1| hypothetical protein CGSSp18BS74_08855 [Streptococcus pneumoniae SP18-BS74] gi|147930203|gb|EDK81188.1| hypothetical protein CGSSp23BS72_06564 [Streptococcus pneumoniae SP23-BS72] gi|168996055|gb|ACA36667.1| conserved hypothetical protein [Streptococcus pneumoniae Hungary19A-6] gi|306483817|gb|ADM90686.1| conserved hypothetical protein [Streptococcus pneumoniae 670-6B] gi|332076984|gb|EGI87446.1| hypothetical protein SPAR148_0517 [Streptococcus pneumoniae GA17545] Length = 159 Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + V++PVIE F V I + +++L IFV++ +G +TL D +L++ ISP+ Sbjct: 7 IVELVREVVEPVIEA-PFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEIISPV 64 Query: 80 LDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LE++SPG++RP+ K G + + + ++ G ++ Sbjct: 65 LDTIKPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLA 124 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + K + I + + ARL V Sbjct: 125 FEEDELTMEYMDKTRKK----TVRIPYSLVSKARLAV 157 >gi|313124032|ref|YP_004034291.1| ribosome maturation factor rimp [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280595|gb|ADQ61314.1| Ribosome maturation factor rimP [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 158 Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 70/153 (45%), Gaps = 7/153 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 I I+PVI V + ++EK L+I+V++ + + ELS+ + LD Sbjct: 8 ILEAIEPVIIGHDCELVDLEYVKEKSQYYLRIYVDKQPNGIDIETIAELSELVGEKLDSM 67 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + + Y LE+SSPG++RP+ ++ D+ + G + + ++ G ++ + Sbjct: 68 QPDPLPDPYILELSSPGLERPIKKEQDWEKAKGQYIHVGLYQKLEGEKVFEGHLLDLDDQ 127 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 LE + + + Q+ I + SAR + Sbjct: 128 EIKLEIKIKTRRK----QLTIPRKQIASARFAI 156 >gi|17546006|ref|NP_519408.1| hypothetical protein RSc1287 [Ralstonia solanacearum GMI1000] gi|34222937|sp|Q8XZV8|RIMP_RALSO RecName: Full=Ribosome maturation factor rimP gi|17428301|emb|CAD14989.1| conserved hypothetical protein [Ralstonia solanacearum GMI1000] Length = 162 Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 73/153 (47%), Gaps = 12/153 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +I+ + M + V++ LL++++++ + + + DCE++S ++ + +VEN Sbjct: 3 LTDLIEKTLTAMGYELVEVERAPAG--LLRVYIDQAETGIVIEDCEKVSHQLTRVFEVEN 60 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE---- 140 + + RLEVSSPG+DRP+ DF R+ G + L ++ G + + Sbjct: 61 V--NYERLEVSSPGLDRPLRTLVDFARFAGLEAKVTLRLPVNGQKNFTGIVQAPAGEPGQ 118 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 LE E + + + L ARL+ Sbjct: 119 ERIGLEFEGKD----GPALLEFTLSELDRARLV 147 >gi|306832817|ref|ZP_07465952.1| protein of hypothetical function DUF150 [Streptococcus bovis ATCC 700338] gi|304425052|gb|EFM28183.1| protein of hypothetical function DUF150 [Streptococcus bovis ATCC 700338] Length = 146 Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 37/150 (24%), Positives = 70/150 (46%), Gaps = 9/150 (6%) Query: 28 VIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE--N 84 ++ P I+E F V + + + +L I +++ +G +T+ D EL++ ISP+LD + Sbjct: 1 MVAPAIKE-PFELVDVEYEKMGSDYVLSILIDKPEG-ITVDDTAELTEIISPLLDAIKPD 58 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEVSSPG++RP+ K + G V + + + G ++ Sbjct: 59 PFPEQYMLEVSSPGLERPLKTKEALEKAVGSYVNVSLYKAIDKVKVFQGDLVAFDGDTLT 118 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ + K + I + ++ ARL V Sbjct: 119 IDYLDKTRKK----TVEIPYSTVAKARLAV 144 >gi|289167248|ref|YP_003445515.1| hypothetical protein smi_0375 [Streptococcus mitis B6] gi|288906813|emb|CBJ21647.1| conserved hypothetical protein [Streptococcus mitis B6] Length = 159 Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + V++PVI+ F V I + +++L IFV++ +G +TL D +L++ ISP+ Sbjct: 7 IVELVREVVEPVIQS-PFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEVISPV 64 Query: 80 LDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LE++SPG++RP+ K G + + + ++ G ++ Sbjct: 65 LDTIKPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLA 124 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + K + I + + ARL V Sbjct: 125 FEEDELTMEYMDKTRKK----TVQIPYSLVSKARLAV 157 >gi|284052677|ref|ZP_06382887.1| hypothetical protein AplaP_14508 [Arthrospira platensis str. Paraca] gi|291568134|dbj|BAI90406.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 153 Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 9/148 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQ-ISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L I + PV + + V + +K +L++ + + + +L DCE +S+A+ Sbjct: 5 LIPKIIDLATPVAKALGLEVVGAMFYTNQKPPVLRVDIRNLEQDTSLEDCERMSRALEEQ 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD ++I Y LEVSSPG+ R + DF+ + G V ++ GK++G Sbjct: 65 LDAVDVIPDAYILEVSSPGVSRSLSCDRDFISFKGFPVTVTTSEPYKGHKQQTGKLVGRD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSL 167 E + ++ R QI+I + Sbjct: 125 EMAVHINQKGR--------QISIPNSLI 144 >gi|237752794|ref|ZP_04583274.1| conserved hypothetical protein [Helicobacter winghamensis ATCC BAA-430] gi|229376283|gb|EEO26374.1| conserved hypothetical protein [Helicobacter winghamensis ATCC BAA-430] Length = 150 Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 79/155 (50%), Gaps = 14/155 (9%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVER--DDGNMTLRDCEELSQA 75 M ++ ++ I+ ++E + F + L+E N +L+I + + + +++L DC+E+S A Sbjct: 1 MTISPNLEDKIKVLVESLGFDLYDVLTLKENENQILRICITKNMESKSVSLDDCQEVSLA 60 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +SP+LDVE Y LEVSSPGI+R + + + ++ + + K++ GK+ Sbjct: 61 LSPLLDVEMPDFEKYYLEVSSPGIERVLKTLAHYKGAINELIKVKTLQEIAGKKEFKGKL 120 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 + SE+ LE + I +++ A Sbjct: 121 VSVSESVLVLENG-----------VEIPLNAIKKA 144 >gi|322376137|ref|ZP_08050646.1| SP14.3 protein [Streptococcus sp. C300] gi|321278905|gb|EFX55949.1| SP14.3 protein [Streptococcus sp. C300] Length = 159 Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 73/157 (46%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + VI+PVI+ F V I + +++L IFV++ +G +TL D +L++ ISP Sbjct: 7 IVELVREVIEPVIQA-PFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEIISPA 64 Query: 80 LDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LE++SPG++RP+ K G + + + ++ G ++ Sbjct: 65 LDTIKPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLVS 124 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + K + I + + ARL V Sbjct: 125 FEGDELTMEYMDKTRKK----TVQIPYSLVSKARLAV 157 >gi|332184779|gb|AEE27033.1| clustered with transcription termination protein NusA [Francisella cf. novicida 3523] Length = 150 Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 8/152 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L D+ +++P+ ++ + I ++ L ++IF++ ++G +++ DC+ +S+ +S I Sbjct: 2 LLDDLYEIVEPITADLGYILWGIEVVGSGKLTIRIFIDHENG-VSVDDCQIVSKEVSAIF 60 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I G Y LEVSSPG++R + G V + + K G + Sbjct: 61 DVEDPISGKYILEVSSPGMNRQIFNIIQAQALVGFNVKAVTLSPVESQTKFKGVLERVEG 120 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 L+ E E I+ FD L R+ Sbjct: 121 NNVILKLEDGKE-------ISFDFDELKKLRV 145 >gi|329115931|ref|ZP_08244648.1| hypothetical protein SPB_1207 [Streptococcus parauberis NCFD 2020] gi|326906336|gb|EGE53250.1| hypothetical protein SPB_1207 [Streptococcus parauberis NCFD 2020] Length = 160 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 68/162 (41%), Gaps = 9/162 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ + P I F V + + + +L I +++ DG +T+ D L++ Sbjct: 3 IANQSIIETVTEAVAPKILA-PFELVDVEYEKMGNDYVLSILIDK-DGGITVEDTTALTE 60 Query: 75 AISPILDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 ISP+LD + Y LEVSSPG++RP+ G + + + + Sbjct: 61 IISPVLDQITPDPFPEQYMLEVSSPGLERPLKTAESITNAVGSYINVSLYKAIDKIKVFQ 120 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G ++ + ++ + + I + S+ ARL V Sbjct: 121 GDLVAFDGQTLTINYLEKNRQK----TVEIPYQSVAKARLAV 158 >gi|298490030|ref|YP_003720207.1| hypothetical protein Aazo_0596 ['Nostoc azollae' 0708] gi|298231948|gb|ADI63084.1| protein of unknown function DUF150 ['Nostoc azollae' 0708] Length = 153 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 1/147 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L I + PV E++ V I L ++ +L++ + + +L DCE +S+ + Sbjct: 5 LVPQIIDLAIPVAEQLGLEVVGIVLHTNQRPPVLRVDIRNTQQDTSLDDCERMSRVLEAS 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD II Y LEVSSPGI R ++ +F+ + G V +Q+ G+++ Sbjct: 65 LDAAEIIPDAYVLEVSSPGISRQLITDREFISFKGFPVVISTSQPYDGQQEWTGQLIRRG 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDS 166 ET +L ++ R + L + D Sbjct: 125 ETKIYLNQKGRVVEIPRPLVTRVQLDE 151 >gi|282857787|ref|ZP_06266996.1| conserved hypothetical protein [Pyramidobacter piscolens W5455] gi|282584457|gb|EFB89816.1| conserved hypothetical protein [Pyramidobacter piscolens W5455] Length = 165 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILD 81 IS ++ ++E + + V ++E +L+++++R DG + L DCE ++ I +LD Sbjct: 4 EKISGQLKTLVESLGYEFVGAETVKEAGSQILRVYIDR-DGGVGLDDCERSAKEIGALLD 62 Query: 82 -VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + E HY LEVSSPG++RP+ + D+ R+ G V + ++++ I G + Sbjct: 63 TAADAFEDHYLLEVSSPGLERPLFKAEDYARFAGRPVNVRLKGVYEGRRRVTAVIEGVKD 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 L D + + + A L+ +E Sbjct: 123 GSVLL--------DCGGEPLDLPLAEIQRAHLVYVEE 151 >gi|270292190|ref|ZP_06198405.1| conserved hypothetical protein [Streptococcus sp. M143] gi|293364177|ref|ZP_06610904.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037] gi|270279718|gb|EFA25560.1| conserved hypothetical protein [Streptococcus sp. M143] gi|291317355|gb|EFE57781.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037] Length = 175 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + V++PVI+ F V I + +++L IFV++ +G +TL D +L++ ISP+ Sbjct: 23 IVELVREVVEPVIQA-PFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEIISPV 80 Query: 80 LDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LE++SPG++RP+ K G + + + ++ G ++ Sbjct: 81 LDTIKPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLVS 140 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + K + I + + ARL V Sbjct: 141 FEEDELTMEYMDKTRKK----TVQIPYSLVSKARLAV 173 >gi|50083627|ref|YP_045137.1| hypothetical protein ACIAD0367 [Acinetobacter sp. ADP1] gi|51316595|sp|Q6FF42|RIMP_ACIAD RecName: Full=Ribosome maturation factor rimP gi|49529603|emb|CAG67315.1| conserved hypothetical protein [Acinetobacter sp. ADP1] Length = 174 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 42/175 (24%), Positives = 75/175 (42%), Gaps = 23/175 (13%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERD-----------DG----- 62 + +I P ++ I + + K LL+IF+++ DG Sbjct: 5 NKTQALHDLIAPAVQACDVNLWGIEFIPQGKRSLLRIFIDKPVDETAEPVLNEDGETELG 64 Query: 63 -NMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 + ++DC ++Q + ILDV + I G Y LEVSSPG DRP + + G VA + Sbjct: 65 RGIGVQDCVRVTQQVGAILDVHDPISGEYALEVSSPGWDRPFFQLEQMSAYIGQQVALRL 124 Query: 122 VLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 + + +++K K++ ++ E G+ + I ++ A LI D Sbjct: 125 ISAVENRRKFQAKLLLVDLENEMIQVEVDGKH-----VLEIDSHNIDKANLIYQD 174 >gi|291613947|ref|YP_003524104.1| hypothetical protein Slit_1480 [Sideroxydans lithotrophicus ES-1] gi|291584059|gb|ADE11717.1| protein of unknown function DUF150 [Sideroxydans lithotrophicus ES-1] Length = 141 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 37/150 (24%), Positives = 78/150 (52%), Gaps = 13/150 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 D++ +++ + M + V + + L+++F+++ DG +++ DCE +S + + VE Sbjct: 2 DVAKLVETTLAGMGYELVDLEVSGRG--LMRVFMDKPDG-ISVEDCERVSNQLVRLFTVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + + RLEVSSPG+DR + ++SDF+R+ G ++ + ++ G I + Sbjct: 59 GV--EYERLEVSSPGLDRVLKKESDFVRFAGQKAQIKVRVPLAGRKNFAGIIGEVKDGVV 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L D++ +AI ++ ARL+ Sbjct: 117 QL--------DVDGSLVAIELSNMDKARLV 138 >gi|125718694|ref|YP_001035827.1| hypothetical protein SSA_1901 [Streptococcus sanguinis SK36] gi|259595394|sp|A3CQ22|RIMP_STRSV RecName: Full=Ribosome maturation factor rimP gi|125498611|gb|ABN45277.1| Conserved uncharacterized protein [Streptococcus sanguinis SK36] gi|325688732|gb|EGD30741.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK115] gi|332364629|gb|EGJ42398.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK1059] Length = 177 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + VI+P I + V I + + +L +FV++ +G +T+ D +L+ ISP+ Sbjct: 25 IVELVREVIEPAILA-PYELVDIEYGKMGGDYVLSVFVDKPEG-ITVNDTADLTDIISPL 82 Query: 80 LDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LEV+SPG++RP+ K G + + + ++ G ++ Sbjct: 83 LDQIKPDPFPEQYFLEVTSPGLERPLKTKEQLADAVGSYIHVSLYKAVDKQKVFEGTLLS 142 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + + ++ I + + ARL V Sbjct: 143 FEEDVLHMEYLDKTRRK----EVEIPYSLVSKARLAV 175 >gi|332362936|gb|EGJ40725.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK49] Length = 149 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 71/153 (46%), Gaps = 9/153 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + VI+P I + V I + + +L +FV++ +G +T+ D +L+ ISP+LD Sbjct: 1 MREVIEPAILA-PYELVDIEYGKMGGDYVLSVFVDKPEG-ITVNDTADLTDIISPLLDQI 58 Query: 84 --NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + Y LEV+SPG++RP+ K G + + + ++ G ++ E Sbjct: 59 KPDPFPEQYFLEVTSPGLERPLKTKEQLSNAVGSYIHVSLYKAVDKQKVFEGTLLSFEED 118 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + + ++ I + + ARL V Sbjct: 119 VLHMEYLDKTRRK----EVEIPYSLVSKARLAV 147 >gi|218887602|ref|YP_002436923.1| hypothetical protein DvMF_2516 [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|226701448|sp|B8DN15|RIMP_DESVM RecName: Full=Ribosome maturation factor rimP gi|218758556|gb|ACL09455.1| protein of unknown function DUF150 [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 226 Score = 140 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 74/183 (40%), Gaps = 30/183 (16%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDG------------------ 62 L ++++ P+ + + I +++ ++L+++V+ G Sbjct: 6 LRDAVAAIATPLADALGIALWGIEIIDGGRMVLRVYVDAKPGMPVPADTAEATESATPEG 65 Query: 63 ---------NMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWN 113 +T+ C LS+ + LDVE+++ Y LEVSSPG++RP + + + Sbjct: 66 VALEGSTPEGVTIDQCARLSRQLGLALDVEDVVRDAYVLEVSSPGLERPFFEIAQVVPYV 125 Query: 114 GHVVACEIVLSS---GDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 G + + + ++K I+ + D + I++++D + A Sbjct: 126 GRTIELTLAVPHPEWPGRRKFRADIVRVEGDTLTFLPDTAPRPDEDPAPISVAWDDVKKA 185 Query: 171 RLI 173 LI Sbjct: 186 HLI 188 >gi|331265776|ref|YP_004325406.1| hypothetical protein SOR_0379 [Streptococcus oralis Uo5] gi|326682448|emb|CBZ00065.1| conserved hypothetical protein [Streptococcus oralis Uo5] Length = 175 Score = 140 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + V++PVI+ F V I + +++L IFV++ +G +TL D +L++ ISP+ Sbjct: 23 IVELVREVVEPVIQA-PFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEIISPV 80 Query: 80 LDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LE++SPG++RP+ K G + + + ++ G ++ Sbjct: 81 LDTIKPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLVS 140 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + K + I + + ARL V Sbjct: 141 FEGDELTMEYMNKTRKK----TVQIPYSLVSKARLAV 173 >gi|313892594|ref|ZP_07826181.1| conserved hypothetical protein [Dialister microaerophilus UPII 345-E] gi|313118991|gb|EFR42196.1| conserved hypothetical protein [Dialister microaerophilus UPII 345-E] Length = 156 Score = 140 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 39/144 (27%), Positives = 79/144 (54%), Gaps = 4/144 (2%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + ++IQPV+E+ V + + E+N +L+IF+++ DG + L DC+E+S + ++ Sbjct: 6 IESAVEALIQPVLEKKGIEVVDVEYVRERNWILRIFIDK-DGGVDLNDCQEISVSAGELI 64 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD---KQKLIGKIMG 137 D ++I +Y LEVSSPGIDR + + DF+R+ V+ ++ + ++ + G Sbjct: 65 DKNDLISDNYMLEVSSPGIDRVLKKDKDFIRYKDSKVSVKLFAPVEELNLDKEFTAILNG 124 Query: 138 TSETGFFLEKEKRGEKDMNELQIA 161 L + E +++ +I+ Sbjct: 125 LVNDEISLILDDGREIFLSKKKIS 148 >gi|312862565|ref|ZP_07722807.1| conserved hypothetical protein [Streptococcus vestibularis F0396] gi|322517415|ref|ZP_08070288.1| protein of hypothetical function DUF150 [Streptococcus vestibularis ATCC 49124] gi|311101970|gb|EFQ60171.1| conserved hypothetical protein [Streptococcus vestibularis F0396] gi|322123897|gb|EFX95456.1| protein of hypothetical function DUF150 [Streptococcus vestibularis ATCC 49124] Length = 157 Score = 140 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 70/157 (44%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + +++V+ P I E + V I + + +L + +++ G +T+ D +L++ ISP+ Sbjct: 5 IIDLVTAVVAPAIPE-PYELVDIEYEKIGSDYILSVLIDKP-GGITVEDTADLTEIISPL 62 Query: 80 LDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LEVSSPG++RP+ K G + + + + G ++ Sbjct: 63 LDTIQPDPFPDQYMLEVSSPGLERPLKTKEALKNAVGQYINVSLYKAIDKIKIFQGDLLT 122 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ + + I + ++ ARL V Sbjct: 123 FDGETLTIDYLDKTRHK----TVEIPYQTVAKARLAV 155 >gi|306824617|ref|ZP_07457962.1| conserved hypothetical protein [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|315611733|ref|ZP_07886655.1| conserved hypothetical protein [Streptococcus sanguinis ATCC 49296] gi|304433185|gb|EFM36156.1| conserved hypothetical protein [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|315316148|gb|EFU64178.1| conserved hypothetical protein [Streptococcus sanguinis ATCC 49296] Length = 175 Score = 140 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + V++PVI+ F V I + +++L IFV++ +G +TL D +L++ ISP+ Sbjct: 23 IVELVREVVEPVIQA-PFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEIISPV 80 Query: 80 LDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LE++SPG++RP+ K G + + + ++ G ++ Sbjct: 81 LDTIKPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLVS 140 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + K + I + + ARL V Sbjct: 141 FEGDELTMEYMDKTRKK----TVQIPYSLVSKARLAV 173 >gi|226951827|ref|ZP_03822291.1| YhbC family protein [Acinetobacter sp. ATCC 27244] gi|226837367|gb|EEH69750.1| YhbC family protein [Acinetobacter sp. ATCC 27244] Length = 174 Score = 140 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 42/175 (24%), Positives = 76/175 (43%), Gaps = 23/175 (13%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVER-----------DDG----- 62 + + +I P + I L + K LL+I++++ +DG Sbjct: 5 NKSQALFDLIAPAVAACDVDLWGIEFLPQGKRSLLRIYIDKAIDENAEPVLNEDGEVEEG 64 Query: 63 -NMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 + ++DC ++Q + +LDV + I G Y LEVSSPG DRP + S + G VA + Sbjct: 65 RGIGVQDCVLVTQQVGAMLDVHDPISGEYALEVSSPGWDRPFFQLSQMSGYIGQQVALRL 124 Query: 122 VLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 + + +++K K++ ++ E G + I ++ A LI D Sbjct: 125 IAAVENRRKFQAKLLSVDLENEMIQVEVEG-----GQVLEIDSHNIDKANLIYQD 174 >gi|329667118|gb|AEB93066.1| hypothetical protein LJP_0738 [Lactobacillus johnsonii DPC 6026] Length = 158 Score = 140 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 72/159 (45%), Gaps = 7/159 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 + ++ V+ P+ E V + ++EK L+I+V+R G + + + LS+ +S Sbjct: 2 TKVTELVADVVTPLAEARGDELVDVEYVKEKKQYYLRIYVDRRPGGIDIEEIANLSELVS 61 Query: 78 PILDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + Y LE+SSPG++RP+ + D+ R G + + ++ G + Sbjct: 62 EKLDELDPDPFPEPYILELSSPGLERPIKNEKDWERAKGSYIHVSLYQKIDGEKTFEGTL 121 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ LE + + + +I I + S+R V Sbjct: 122 KDLNQDQIVLEVKIKTRRK----EITIPRKVIASSRFAV 156 >gi|302874659|ref|YP_003843292.1| hypothetical protein Clocel_1784 [Clostridium cellulovorans 743B] gi|307690727|ref|ZP_07633173.1| hypothetical protein Ccel74_21406 [Clostridium cellulovorans 743B] gi|302577516|gb|ADL51528.1| protein of unknown function DUF150 [Clostridium cellulovorans 743B] Length = 153 Score = 140 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 36/143 (25%), Positives = 73/143 (51%), Gaps = 2/143 (1%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 +I S + VI+++ + I + E L+ ++E + G + L DCE++S+AIS I+DV Sbjct: 9 EIESRMGSVIKDLGYDLYHIEYVVEGGENFLRFYIENEAG-IGLNDCEKVSRAISDIIDV 67 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ I+ +Y LEVSSPG+ R + + F R+ G V ++ ++K + + Sbjct: 68 EDPIDENYYLEVSSPGVFRTLFKDEHFKRYIGEEVTVKLKSLLNGRKKFDAVLDNIDDEN 127 Query: 143 FFLEKEKRGEKDMNELQIAISFD 165 +++ ++ ++ + Sbjct: 128 IYVKANNEVITVPKKILKQVTLN 150 >gi|331002484|ref|ZP_08326002.1| hypothetical protein HMPREF0491_00864 [Lachnospiraceae oral taxon 107 str. F0167] gi|330410300|gb|EGG89734.1| hypothetical protein HMPREF0491_00864 [Lachnospiraceae oral taxon 107 str. F0167] Length = 154 Score = 140 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 69/148 (46%), Gaps = 6/148 (4%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++ + E+ F V + ++E L+ + ++ G + + DC ++S+ +S L Sbjct: 8 VKRTEEFLEKLSSELDFEVVDVEFVKEAGEHYLRAYCDK-TGGIGIEDCADISRHLSDWL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D + I+ Y LEVSSPG+ R + + DFLR G V ++ + + G + Sbjct: 67 DENDFIDEGYILEVSSPGLGRTLKKDKDFLRELGKEVELKLYKAREGVKDFEGVLKSFDG 126 Query: 141 TGFFLEKEKRGE----KDMNELQIAISF 164 +E E + E K++ +++ I F Sbjct: 127 DNITVEIENKDEVFTKKEIANIRLKIDF 154 >gi|325695171|gb|EGD37072.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK150] gi|328944977|gb|EGG39134.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK1087] gi|332358011|gb|EGJ35844.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK1056] Length = 177 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + VI+P I + V I + + +L +FV++ +G +T+ D +L+ ISP+ Sbjct: 25 IVELVREVIEPAILA-PYELVDIEYGKMGGDYVLSVFVDKPEG-ITVNDTADLTDIISPL 82 Query: 80 LDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LEV+SPG++RP+ K G + + + ++ G ++ Sbjct: 83 LDQIKPDPFPEQYFLEVTSPGLERPLKTKEQLSDAVGSYIHVSLYKAVDKQKVFEGTLLS 142 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + + ++ I + + ARL V Sbjct: 143 FEEDVLHMEYLDKTRRK----EVEIPYSLVSKARLAV 175 >gi|327467114|gb|EGF12624.1| hypothetical protein HMPREF9386_2224 [Streptococcus sanguinis SK330] Length = 177 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + VI+P I + V I + + +L +FV++ +G +T+ D +L+ ISP+ Sbjct: 25 IVELVREVIEPAILAH-YELVDIEYGKMGGDYVLSVFVDKPEG-ITVNDTADLTDIISPL 82 Query: 80 LDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LEV+SPG++RP+ K G + + + ++ G ++ Sbjct: 83 LDQIKPDPFPEQYFLEVTSPGLERPLKTKEQLADTVGSYIHVSLYKAVDKQKVFEGTLLS 142 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + + ++ I + + ARL V Sbjct: 143 FEEDVLHMEYLDKTRRK----EVEIPYSLVSKARLAV 175 >gi|294649081|ref|ZP_06726524.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC 19194] gi|292825027|gb|EFF83787.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC 19194] Length = 174 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 42/175 (24%), Positives = 77/175 (44%), Gaps = 23/175 (13%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVER-----------DDG----- 62 + + +I P + I L + K LL+I++++ +DG Sbjct: 5 NKSQALFDLIAPAVAACDVDLWGIEFLPQGKRSLLRIYIDKAIDENAEPVLNEDGEVEEG 64 Query: 63 -NMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 + ++DC ++Q + +LDV + I G Y LEVSSPG DRP + S + G VA + Sbjct: 65 RGIGVQDCVLVTQQVGAMLDVHDPISGEYALEVSSPGWDRPFFQLSQMSGYIGQQVALRL 124 Query: 122 VLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 + + +++K K++ ++ E G + + I ++ A LI D Sbjct: 125 IAAVENRRKFQAKLLSVDLENEMIQVEVEGAQ-----VLEIDSHNIDKANLIYQD 174 >gi|323144580|ref|ZP_08079169.1| hypothetical protein HMPREF9444_01845 [Succinatimonas hippei YIT 12066] gi|322415656|gb|EFY06401.1| hypothetical protein HMPREF9444_01845 [Succinatimonas hippei YIT 12066] Length = 175 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 72/154 (46%), Gaps = 8/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 + I +++P+IE + ++ LLQIF++ DG ++ C +++ +SP Sbjct: 18 IEEKIDELVRPLIEASDLILWGVRYRGGRDSALLQIFIDSKDG-VSADTCGDITNMLSPA 76 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD +II Y LEVSSPG DR + + G + E+ + G ++K G + + Sbjct: 77 LDAADIIAPAYILEVSSPGFDRILFTLDQARAYIGKKIKAEVRIPVGGRRKFEGVLEEVT 136 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 E D Q+ I+F ++ ARL+ Sbjct: 137 EDNSL------KINDKISGQVEIAFSNISVARLV 164 >gi|327462401|gb|EGF08726.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK1057] Length = 177 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + VI+P I + V I + + +L +FV++ +G +T+ D +L+ ISP+ Sbjct: 25 IVELVREVIEPAILA-PYELVDIEYGKMGGDYVLSVFVDKPEG-ITVNDTADLTDIISPL 82 Query: 80 LDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LEV+SPG++RP+ K G + + + ++ G ++ Sbjct: 83 LDQIKPDPFPEQYFLEVTSPGLERPLKTKEQLADAVGSYIHVSLYKAVDKQKVFEGTLLS 142 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + + ++ I + + ARL V Sbjct: 143 FEEEVLHMEYLDKTRRK----EVEIPYSLVSKARLAV 175 >gi|306830061|ref|ZP_07463247.1| hypothetical protein HMPREF8571_1603 [Streptococcus mitis ATCC 6249] gi|304427774|gb|EFM30868.1| hypothetical protein HMPREF8571_1603 [Streptococcus mitis ATCC 6249] Length = 175 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + V++PVI+ F V I + +++L IFV++ +G +TL D +L++ ISP+ Sbjct: 23 IVELVREVVEPVIQA-PFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEIISPV 80 Query: 80 LDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LE++SPG++RP+ K G + + + ++ G ++ Sbjct: 81 LDTIKPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLS 140 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + K + I + + ARL V Sbjct: 141 FEEEELTVEYMDKTRKK----TVQIPYSLVSKARLAV 173 >gi|104774215|ref|YP_619195.1| hypothetical protein Ldb1336 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514303|ref|YP_813209.1| hypothetical protein LBUL_1245 [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122274965|sp|Q049V1|RIMP_LACDB RecName: Full=Ribosome maturation factor rimP gi|122397110|sp|Q1G9P5|RIMP_LACDA RecName: Full=Ribosome maturation factor rimP gi|103423296|emb|CAI98137.1| Conserved hypothetical protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093618|gb|ABJ58771.1| hypothetical protein LBUL_1245 [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 158 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 71/153 (46%), Gaps = 7/153 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 I I+PVI V + ++EK+ L+I+V++ + + ELS+ + LD Sbjct: 8 ILEAIEPVIIGHDCELVDLEYVKEKSQDYLRIYVDKQPNGIDIETIAELSELVGEKLDSM 67 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + + Y LE+SSPG++RP+ ++ D+ + G + + ++ G ++ + Sbjct: 68 QPDPLPDPYILELSSPGLERPIKKEQDWEKAKGQYIHVGLYQKLEGEKVFEGHLLDLDDQ 127 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 LE + + + Q+ I + SAR + Sbjct: 128 EIKLEIKIKTRRK----QLTIPRKQIASARFAI 156 >gi|148270199|ref|YP_001244659.1| hypothetical protein Tpet_1066 [Thermotoga petrophila RKU-1] gi|166977875|sp|A5ILL0|RIMP_THEP1 RecName: Full=Ribosome maturation factor rimP gi|147735743|gb|ABQ47083.1| protein of unknown function DUF150 [Thermotoga petrophila RKU-1] Length = 150 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 14/161 (8%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELS 73 +F +M + + + + EE + E + +L+I ++ G +++RDCE S Sbjct: 1 MFEEM-ILEKVRKEAERIAEEQGLEIFDVQYRRESRGWVLRIIIDNPVGYVSVRDCELFS 59 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 + I LD E++IE Y LEVSSPG+DRP+ D++R+ G + D + IG Sbjct: 60 REIERFLDREDLIEHSYTLEVSSPGLDRPLRGPKDYVRFTGKLAKIVTK----DGKTFIG 115 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +I + + EKR I+ D + A L V Sbjct: 116 RIESFVDGTITISDEKRKY--------EINIDDVKRANLEV 148 >gi|290581069|ref|YP_003485461.1| hypothetical protein SmuNN2025_1543 [Streptococcus mutans NN2025] gi|254997968|dbj|BAH88569.1| hypothetical protein [Streptococcus mutans NN2025] Length = 163 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 71/166 (42%), Gaps = 11/166 (6%) Query: 15 IFGDMGLAGDISSVIQPVIEEM---SFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCE 70 + + + +++PV+ + F V I + N +L I V++ +G +T+ D Sbjct: 1 MCKEGNTIATLVDIVRPVVAPVIPKPFELVDIEYEKLGGNYVLSILVDKPEG-ITVEDTA 59 Query: 71 ELSQAISPILDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 +L+ ISP+LD + Y LE+SSPG++RP+ + GH + + + Sbjct: 60 DLTDIISPLLDTIKPDPFPEQYMLEISSPGLERPLKTAQSLMNAVGHYINVSLYQAIDKV 119 Query: 129 QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + G + + + ++ + I + + ARL V Sbjct: 120 KVFEGDLTAFDGETLTMTYLDKTQQK----TVTIPYKMVAKARLAV 161 >gi|42519363|ref|NP_965293.1| hypothetical protein LJ1491 [Lactobacillus johnsonii NCC 533] gi|51316714|sp|Q74IS4|RIMP_LACJO RecName: Full=Ribosome maturation factor rimP gi|41583651|gb|AAS09259.1| hypothetical protein LJ_1491 [Lactobacillus johnsonii NCC 533] Length = 158 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 71/159 (44%), Gaps = 7/159 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 + ++ V+ P+ E V + ++EK L+I+V+R G + + + LS+ +S Sbjct: 2 TKVTELVADVVTPLAEARGDELVDVEYVKEKKQYYLRIYVDRRPGGIDIEEIANLSELVS 61 Query: 78 PILDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + Y LE+SSPG++RP+ + D+ R G + + ++ G + Sbjct: 62 EKLDELDPDPFPEPYILELSSPGLERPIKNEKDWERAKGSYIHVSLYQKIDGEKTFEGTL 121 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ LE + + + I I + S+R V Sbjct: 122 KDLNQDQIVLEVKIKTRRK----DITIPRKVIASSRFAV 156 >gi|289423156|ref|ZP_06424971.1| conserved hypothetical protein [Peptostreptococcus anaerobius 653-L] gi|289156487|gb|EFD05137.1| conserved hypothetical protein [Peptostreptococcus anaerobius 653-L] Length = 154 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 83/158 (52%), Gaps = 12/158 (7%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISP 78 +A + ++QP+ + F V + ++E L++ ++ +DG + L +CE++S+ ++P Sbjct: 4 NIAQQVEKLVQPIADLYGFELVDVEYVKEAGIYYLRVIIDSEDG-IGLDECEKVSRDLNP 62 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG--DKQKLIGKIM 136 ILD +++IE +Y LEV SPGIDR + R ++ +++G +V ++ ++ + + Sbjct: 63 ILDEKDMIEENYLLEVCSPGIDRILKRDHEYEKYSGKLVEVKLYANNDIVKGKHFEADLC 122 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G + L + + ++ ++ + RL V Sbjct: 123 GLEDDNIVLLYKGK--------ELKLNRKEVAQVRLAV 152 >gi|323350355|ref|ZP_08086019.1| protein of hypothetical function DUF150 [Streptococcus sanguinis VMC66] gi|322123428|gb|EFX95104.1| protein of hypothetical function DUF150 [Streptococcus sanguinis VMC66] gi|327472755|gb|EGF18182.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK408] Length = 177 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 71/159 (44%), Gaps = 9/159 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + + VI+P I + V I + + +L +FV++ +G +T+ D +L+ IS Sbjct: 23 TTIVELVREVIEPAILA-PYELVDIEYGKMGGDYVLSVFVDKPEG-ITVNDTADLTDIIS 80 Query: 78 PILDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 P+LD + Y LEV+SPG++RP+ K G + + + ++ G + Sbjct: 81 PLLDQIKPDPFPEQYFLEVTSPGLERPLKTKEQLADAVGSYIHVSLYKAVDKQKVFEGTL 140 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + +E + + ++ I + + ARL V Sbjct: 141 LSFEGEVLHMEYLDKTRRK----EVEIPYSLVSKARLAV 175 >gi|313673262|ref|YP_004051373.1| hypothetical protein Calni_1302 [Calditerrivibrio nitroreducens DSM 19672] gi|312940018|gb|ADR19210.1| protein of unknown function DUF150 [Calditerrivibrio nitroreducens DSM 19672] Length = 157 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 69/154 (44%), Gaps = 12/154 (7%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + + + + + + E L+IF+++++ +TL DC S+ IS Sbjct: 8 IVERVKEYSEKIAPKFGVEIFDVKFVREPSGYTLRIFLDKEN--LTLEDCANFSKEISKW 65 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS-GDKQKLIGKIMGT 138 LD E++I Y LEVSSPG++RP+ D+ ++ G E+ ++ G I G Sbjct: 66 LDKEDLIPHKYNLEVSSPGLNRPLRNIDDYKKYIGRKCKVELFKKDSSGRKNYTGYIKGV 125 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ +K +I++S+ + L Sbjct: 126 DGEVILIDLKKE--------EISLSYSDIKKGNL 151 >gi|324992029|gb|EGC23951.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK405] gi|324994122|gb|EGC26036.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK678] gi|325697659|gb|EGD39544.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK160] gi|327490546|gb|EGF22327.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK1058] Length = 177 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + VI+P I + V I + + +L +FV++ +G +T+ D +L+ ISP+ Sbjct: 25 IVELVREVIEPAILP-PYELVDIEYGKMGGDYVLSVFVDKPEG-ITVNDTADLTDIISPL 82 Query: 80 LDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LEV+SPG++RP+ K G + + + ++ G ++ Sbjct: 83 LDQIKPDPFPEQYFLEVTSPGLERPLKTKEQLADAVGSYIHVSLYKAVDKQKVFEGTLLS 142 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E +E + + ++ I + + ARL V Sbjct: 143 FAEDVLHMEYLDKTRRK----EVEIPYSLVSKARLAV 175 >gi|317153846|ref|YP_004121894.1| hypothetical protein Daes_2142 [Desulfovibrio aespoeensis Aspo-2] gi|316944097|gb|ADU63148.1| protein of unknown function DUF150 [Desulfovibrio aespoeensis Aspo-2] Length = 156 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 75/153 (49%), Gaps = 6/153 (3%) Query: 22 AGDISSVIQPVIEEMSFRSVQI-SLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++ +I+P +E + + S + + +++I+++ DG +T+ C ++S+ +S +L Sbjct: 6 EDTLADIIRPEVEGLGCTLWGLASPSKGERRIIRIYIDGPDG-VTIDQCAKVSRQVSLLL 64 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 +VE+ I G Y LEVSSPG+DR + + G V + + ++K+ G + Sbjct: 65 EVEDTIPGAYILEVSSPGLDRRFFSTAQMADFVGKQVTALLYEARDGRRKVTGVLKSIGA 124 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 ++ D + ++++ L RL+ Sbjct: 125 DA----GQESFTLDEGGQDVTLAWNDLKEVRLV 153 >gi|15644523|ref|NP_229575.1| hypothetical protein TM1778 [Thermotoga maritima MSB8] gi|34223165|sp|Q9X299|RIMP_THEMA RecName: Full=Ribosome maturation factor rimP gi|4982356|gb|AAD36841.1|AE001815_15 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 150 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 14/161 (8%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELS 73 +F +M + + + + EE + E + +L+I ++ G +++RDCE S Sbjct: 1 MFEEM-ILEKVRKEAERIAEEQGLEIFDVQYRRESRGWVLRIIIDNPVGYVSVRDCELFS 59 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 + + LD E+ IE Y LEVSSPG+DRP+ D++R+ G + D + IG Sbjct: 60 REMERFLDREDFIEHSYTLEVSSPGLDRPLRGPRDYVRFTGKLAKIVTK----DGKTFIG 115 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +I + + EKR I+ D + A L V Sbjct: 116 RIESFVDGTITISDEKRKY--------EINIDDVKRANLEV 148 >gi|332707467|ref|ZP_08427515.1| hypothetical protein LYNGBM3L_38480 [Lyngbya majuscula 3L] gi|332353764|gb|EGJ33256.1| hypothetical protein LYNGBM3L_38480 [Lyngbya majuscula 3L] Length = 153 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 70/153 (45%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 L + + P+ +++ V+ + +L++++ + +L DCE +S+A+ Sbjct: 5 LIPQLIDLATPLAQDLGLEIVEALFQTNRRPPVLRVYIRNPIRDTSLDDCERMSRALEAQ 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + II Y LE+SSPGI + + +F+ + G V + +Q+ G+++ Sbjct: 65 LDAKEIILDTYVLEISSPGITQDLTTDREFISFKGFGVIVQTFEPYQGQQEWRGQLIRRD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 E+G +L + R AI + +L Sbjct: 125 ESGVYLNLKGRA--------FAIPRQLVSRVKL 149 >gi|332522698|ref|ZP_08398950.1| hypothetical protein STRPO_1027 [Streptococcus porcinus str. Jelinkova 176] gi|332313962|gb|EGJ26947.1| hypothetical protein STRPO_1027 [Streptococcus porcinus str. Jelinkova 176] Length = 176 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 75/166 (45%), Gaps = 9/166 (5%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCE 70 E + + + ++ + PVI+ F V + + + +L I V+++ G +T+ D Sbjct: 15 EGIVIANQHIIDTVTETVSPVIKS-PFELVDVEYEKMGSDYILSILVDKE-GGITVEDTT 72 Query: 71 ELSQAISPILDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 EL++ ISP+LD + Y LEVSSPG++RP+ K + G V + + Sbjct: 73 ELTEIISPLLDQISPDPFPDQYMLEVSSPGLERPLKTKEAIEKAVGSYVNVSLYKAIDKV 132 Query: 129 QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + G ++ ++ + + + I + ++ ARL V Sbjct: 133 KVFQGDLISFDGKTLTIDYLDKTRHKV----VDIPYQTVAKARLAV 174 >gi|254876276|ref|ZP_05248986.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842297|gb|EET20711.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 152 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 71/152 (46%), Gaps = 8/152 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L D+ +++P+ ++ + I ++ L ++IF++ ++G +++ DC+ +S+ +S I Sbjct: 4 LLDDLYEIVEPITADLGYILWGIEVVGAGKLTIRIFIDHENG-VSVDDCQVVSKEVSAIF 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG++R + G V + + K G + Sbjct: 63 DVEDPISDKYVLEVSSPGMNRQIFNIIQAQALVGFNVKAVTLTPVESQTKFKGVLERVEG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 L+ + +++ FD L R+ Sbjct: 123 NNVILKLDD-------GREVSFDFDELKKFRV 147 >gi|329121256|ref|ZP_08249883.1| hypothetical protein HMPREF9083_0344 [Dialister micraerophilus DSM 19965] gi|327470190|gb|EGF15653.1| hypothetical protein HMPREF9083_0344 [Dialister micraerophilus DSM 19965] Length = 156 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 39/144 (27%), Positives = 79/144 (54%), Gaps = 4/144 (2%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + ++IQPV+E+ V + + E+N +L+IF+++ DG + L DC+E+S + ++ Sbjct: 6 IESAVEALIQPVLEKKGIEVVDVEYVRERNWILRIFIDK-DGGVDLNDCQEISVSAGELI 64 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD---KQKLIGKIMG 137 D ++I +Y LEVSSPGIDR + + DF+R+ V+ ++ + ++ + G Sbjct: 65 DKNDLISDNYMLEVSSPGIDRVLKKDKDFIRYKDSKVSVKLFAPVEELNLDKEFAAILNG 124 Query: 138 TSETGFFLEKEKRGEKDMNELQIA 161 L + E +++ +I+ Sbjct: 125 LVNDEISLILDDGREIFLSKKKIS 148 >gi|238852617|ref|ZP_04643027.1| conserved hypothetical protein [Lactobacillus gasseri 202-4] gi|282850816|ref|ZP_06260190.1| conserved hypothetical protein [Lactobacillus gasseri 224-1] gi|311110886|ref|ZP_07712283.1| SP14.3 protein [Lactobacillus gasseri MV-22] gi|259585807|sp|Q044C1|RIMP_LACGA RecName: Full=Ribosome maturation factor rimP gi|238834763|gb|EEQ26990.1| conserved hypothetical protein [Lactobacillus gasseri 202-4] gi|282557768|gb|EFB63356.1| conserved hypothetical protein [Lactobacillus gasseri 224-1] gi|311066040|gb|EFQ46380.1| SP14.3 protein [Lactobacillus gasseri MV-22] Length = 158 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 72/159 (45%), Gaps = 7/159 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 + ++ V+ P+ E V + ++EK L+I+V+R G + + + LS+ +S Sbjct: 2 TKVTELVADVVTPLAEARGDELVDVEYVKEKKQYYLRIYVDRRPGGIDIEEIANLSELVS 61 Query: 78 PILDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + Y LE+SSPG++RP+ + D+ R G + + ++ G + Sbjct: 62 EKLDELDPDPFPEPYILELSSPGLERPIKNEKDWERAKGSYIHVSLYQKIDGEKTYEGTL 121 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ LE + + + +I I + S+R V Sbjct: 122 KDLNQNQIVLEVKIKTRRK----EITIPRKVIASSRFAV 156 >gi|167627170|ref|YP_001677670.1| hypothetical protein Fphi_0946 [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|241667732|ref|ZP_04755310.1| hypothetical protein FphipA2_03111 [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|226696044|sp|B0TWR1|RIMP_FRAP2 RecName: Full=Ribosome maturation factor rimP gi|167597171|gb|ABZ87169.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 150 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 71/152 (46%), Gaps = 8/152 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L D+ +++P+ ++ + I ++ L ++IF++ ++G +++ DC+ +S+ +S I Sbjct: 2 LLDDLYEIVEPITADLGYILWGIEVVGAGKLTIRIFIDHENG-VSVDDCQVVSKEVSAIF 60 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG++R + G V + + K G + Sbjct: 61 DVEDPISDKYVLEVSSPGMNRQIFNIIQAQALVGFNVKAVTLTPVESQTKFKGVLERVEG 120 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 L+ + +++ FD L R+ Sbjct: 121 NNVILKLDD-------GREVSFDFDELKKFRV 145 >gi|209527730|ref|ZP_03276226.1| protein of unknown function DUF150 [Arthrospira maxima CS-328] gi|209491851|gb|EDZ92210.1| protein of unknown function DUF150 [Arthrospira maxima CS-328] Length = 153 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 9/150 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQ-ISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L I + PV + + V + +K +L++ + + + +L DCE +S+A+ Sbjct: 5 LIPKIIDLATPVAKPLGLEVVGAMFYTNQKPPVLRVDIRNLEQDTSLEDCERMSRALEEQ 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD ++I Y LEVSSPG+ R + DF+ + G V ++ GK++G Sbjct: 65 LDAVDVIPDAYILEVSSPGVSRSLSCDRDFISFKGFPVTVTTSEPYKGHKQQSGKLVGRD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLS 169 E + ++ R QI+I + Sbjct: 125 EMAVHINQKGR--------QISIPNSLITE 146 >gi|319937396|ref|ZP_08011803.1| hypothetical protein HMPREF9488_02638 [Coprobacillus sp. 29_1] gi|319807762|gb|EFW04355.1| hypothetical protein HMPREF9488_02638 [Coprobacillus sp. 29_1] Length = 153 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 5/155 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I+S+IQP+++ I + EKN L+IF+E++DG++ + C +S+ IS Sbjct: 1 MLEKITSLIQPILDNHDVYLDDIEYVSEKNEWYLRIFIEKNDGHLDMDTCVAVSEDISLK 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD E+II Y LEVSSPG ++P+ + G V + + ++ G + Sbjct: 61 LDEEDIITNEYYLEVSSPGAEKPLKTLEKVQQSIGEYVYIQFKKPTLGMDEVYGTLFNVD 120 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L+ + K + I +D + RL V Sbjct: 121 GEMIELQYMVKNIKKKCD----IKYDDIAFIRLAV 151 >gi|259585811|sp|A6T0Z0|RIMP_JANMA RecName: Full=Ribosome maturation factor rimP Length = 161 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 75/158 (47%), Gaps = 16/158 (10%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVE-----RDDGNMTLRDCEELSQAISP 78 +S++I+ + M + V + L+++F++ D G +T+ DCE+++ + Sbjct: 2 QLSALIEKTVVGMGYELVNFE--QAARGLVRVFIDFTPEDADKGAITVEDCEKVTHQLLH 59 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS---GDKQKLIGKI 135 +L VEN + RLEVSSPG+DRP+ + SD++R+ G ++ + +++ G + Sbjct: 60 VLTVEN--ANYERLEVSSPGLDRPLKKLSDYVRFAGAEALVKLRMPMPNAANRKSFQGIL 117 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 LE E ++ + + A L+ Sbjct: 118 QEPVGETLALEFEGND----GPAKLEFTLADVDKAHLV 151 >gi|325686966|gb|EGD28990.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK72] Length = 177 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 73/157 (46%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + VI+P I + V I + + +L +FV++ +G +T+ D +L+ ISP+ Sbjct: 25 IVELVREVIEPAILA-PYELVDIEYGKMGGDYVLSVFVDKPEG-ITVNDTADLTDIISPL 82 Query: 80 LDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LEV+SPG++RP+ K G + + + ++ G ++ Sbjct: 83 LDQIKPDPFPEQYFLEVTSPGLERPLKTKEQLADAVGSYIHVSLYKAVDKQKVFEGTLLS 142 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E LE + + ++ I++ + ARL V Sbjct: 143 FEEDVLHLEYLDKTRRK----EVEITYSLVSKARLAV 175 >gi|170288838|ref|YP_001739076.1| hypothetical protein TRQ2_1046 [Thermotoga sp. RQ2] gi|281412458|ref|YP_003346537.1| protein of unknown function DUF150 [Thermotoga naphthophila RKU-10] gi|226734063|sp|B1LAP5|RIMP_THESQ RecName: Full=Ribosome maturation factor rimP gi|170176341|gb|ACB09393.1| protein of unknown function DUF150 [Thermotoga sp. RQ2] gi|281373561|gb|ADA67123.1| protein of unknown function DUF150 [Thermotoga naphthophila RKU-10] Length = 150 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 42/161 (26%), Positives = 74/161 (45%), Gaps = 14/161 (8%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELS 73 +F +M + + + + EE + E + +L+I ++ G +++RDCE S Sbjct: 1 MFEEM-ILEKVRKEAERIAEEQGLEIFDVQYRRESRGWILRIIIDNPMGYVSVRDCELFS 59 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 + + LD E++IE Y LEVSSPG+DRP+ D++R+ G + D + IG Sbjct: 60 REMERFLDREDLIEHSYTLEVSSPGLDRPLRGPRDYVRFTGKLAKIVTK----DGKTFIG 115 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +I + + K+ I+ D + A L V Sbjct: 116 RIESFVDGTITISDGKKKY--------EINIDDVKRANLEV 148 >gi|148651971|ref|YP_001279064.1| hypothetical protein PsycPRwf_0155 [Psychrobacter sp. PRwf-1] gi|172048444|sp|A5WBS3|RIMP_PSYWF RecName: Full=Ribosome maturation factor rimP gi|148571055|gb|ABQ93114.1| protein of unknown function DUF150 [Psychrobacter sp. PRwf-1] Length = 166 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 18/168 (10%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVER------DDGNMTLRDCEEL 72 ++ +I P + + L + LL+I++E D +T+ +C + Sbjct: 5 NKVTQLTDIIAPAVAACDVALWGVEFLPQGGRSLLRIYIEALPEDKAADKQVTIENCAAV 64 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD----K 128 + +S +L+V + I G Y LEVSSPG+DRP + G + ++ + G + Sbjct: 65 THQVSGVLEVHDPIAGEYVLEVSSPGLDRPFFAPEQMTDYMGQTINLRLIQAVGSGSSKR 124 Query: 129 QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 +K+ GK+ + + + + I+ D++ A LI D Sbjct: 125 RKVTGKLEQLDDKQLSV-------VTADGERYDIALDNIDKANLIYQD 165 >gi|259585815|sp|A4G7S9|RIMP_HERAR RecName: Full=Ribosome maturation factor rimP Length = 161 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 77/158 (48%), Gaps = 16/158 (10%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVE-----RDDGNMTLRDCEELSQAISP 78 +S++I+ + M + V + L++++++ D G++T+ DCE+++ + Sbjct: 2 QLSALIEKTVVGMGYELVNFE--QAARGLVRVYIDFTPEDADKGSITVEDCEKVTHQLLH 59 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS---GDKQKLIGKI 135 +L VEN + RLEVSSPG+DRP+ + SD++R+ G ++ L +++ G + Sbjct: 60 VLTVEN--ANYERLEVSSPGLDRPLKKLSDYVRFAGAEALVKLRLPMPNAANRKSFQGIL 117 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 LE E + ++ + + A L+ Sbjct: 118 QEPVGETLALEFEG----NEGPAKLEFTLADVDKAHLV 151 >gi|332704825|ref|ZP_08424913.1| Ribosome maturation factor rimP [Desulfovibrio africanus str. Walvis Bay] gi|332554974|gb|EGJ52018.1| Ribosome maturation factor rimP [Desulfovibrio africanus str. Walvis Bay] Length = 170 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 10/163 (6%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELS 73 + + I+ + VIE M + ++ + + + ++VE G +++ E S Sbjct: 1 MAVTTEITNRIAQAARTVIEPMGLSLWGVEIVLDGRGQTVLVYVESPTG-VSVEQLAEAS 59 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 + I +LDVE+ I G YRLE+SSPG +R + G V + GD++K G Sbjct: 60 RNIGLVLDVEDFIPGTYRLELSSPGFERSFFSTEQMRDYMGEKVEIRTSVPLGDRRKFRG 119 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 + E +E E + + ++ + ARLIV D Sbjct: 120 ILKEVREDSIAVEAEGQ--------LFNLRWEDVKKARLIVED 154 >gi|317051741|ref|YP_004112857.1| hypothetical protein Selin_1571 [Desulfurispirillum indicum S5] gi|316946825|gb|ADU66301.1| protein of unknown function DUF150 [Desulfurispirillum indicum S5] Length = 155 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 81/148 (54%), Gaps = 7/148 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 +S ++QP+++E++ + L+ +L+++++++ G ++L +CE +S + +LDVE+ Sbjct: 10 VSELLQPIVQELALELFDVELINASGWILRVYLDKE-GGVSLDECERVSIELGTLLDVED 68 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 II Y LEVSSPG++R + ++DF ++ G + + + IG + S+T Sbjct: 69 IIGFRYTLEVSSPGVNRKLRHRADFEKYLGRLARIRTSEVLLNTKLHIGYLADISDTELT 128 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARL 172 + ++ RG + I + + A L Sbjct: 129 IREKDRG------ILIPVPLAIIEKANL 150 >gi|313888257|ref|ZP_07821928.1| conserved hypothetical protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845660|gb|EFR33050.1| conserved hypothetical protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 153 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 73/155 (47%), Gaps = 10/155 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQ 74 L +I + + V EE+ + V I K+ LL IF+ + +G + L DC ++S+ Sbjct: 1 MNKKELKKEIYPLAEEVAEELGYEIVDIEFQNGSKHDLLSIFIYKKEG-IDLNDCTDMSR 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 ++ LD I++ Y LE+SSPG+DRP+ K D+ R G+ V ++ K++ Sbjct: 60 SLEKKLDNLEILKNPYYLEISSPGLDRPLKTKDDYRRNIGNEVDVKLYAPIDGKKEFSFV 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLS 169 + + + + + + AI S+ S Sbjct: 120 LDKYDDENVYCTLDGK--------EFAIPIKSISS 146 >gi|299139240|ref|ZP_07032416.1| protein of unknown function DUF150 [Acidobacterium sp. MP5ACTX8] gi|298598920|gb|EFI55082.1| protein of unknown function DUF150 [Acidobacterium sp. MP5ACTX8] Length = 193 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 75/185 (40%), Gaps = 34/185 (18%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDD-------------------- 61 I + + S V + K+ L++F+E+D Sbjct: 6 ETIRATADRIAASHSLEVVDLEFTGGSKHRTLRVFLEKDAAARAKFTAEAASNEEAGLPK 65 Query: 62 -------GNMTLRDCEELSQAISPILDVENIIEGH-YRLEVSSPGIDRPMVRKSDFLRWN 113 +T DC ++ +LDVE++I G Y LE SSPG++R +++ +D+ R+ Sbjct: 66 GVPVETLSGVTHEDCANFARDFGTVLDVEDLIPGAEYTLETSSPGLERKLLKAADYERFK 125 Query: 114 GHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE-----KEKRGEKDMNELQIAISFDSLL 168 G +V + + G+++ T L+ ++ + +K + + IS ++ Sbjct: 126 GSLVKVQTFSPVDSNRHFTGRLVAFEGTNLTLDLAAVKQKGKAKKTLTAQTVEISLANVE 185 Query: 169 SARLI 173 A L+ Sbjct: 186 KANLV 190 >gi|300866112|ref|ZP_07110840.1| Ribosome maturation factor rimP [Oscillatoria sp. PCC 6506] gi|300335908|emb|CBN55998.1| Ribosome maturation factor rimP [Oscillatoria sp. PCC 6506] Length = 153 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 69/153 (45%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 L I + P+ E + V +N +L++ + + L DCE +S+A+ Sbjct: 5 LIPQIIDLATPLAETLGLEVVGAVFHTNQNPPILRVDIRNPQQDTGLEDCERMSKALEEK 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD+ +I+ Y LE+SSPG+ R + +F+ + G V + + ++ +G+++ Sbjct: 65 LDMADILPDAYVLEISSPGLSRSLASDREFISFKGFPVIVKTSEAYNGLKEWVGQLIRRD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 E ++ ++ R IAI + +L Sbjct: 125 EKAVYINQKGR--------PIAIPRSLITQVQL 149 >gi|289522944|ref|ZP_06439798.1| hypothetical protein HMPREF1705_00858 [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503487|gb|EFD24651.1| hypothetical protein HMPREF1705_00858 [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 161 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 9/141 (6%) Query: 35 EMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILD-VENIIEGHYRL 92 + + V + L+ E ++L+I++ G + ++DCE +S+ + LD E I G Y L Sbjct: 21 GLGYDFVGMELVHEHGRMILRIYINTP-GGINVKDCETVSRKVDKFLDSREEIFGGRYYL 79 Query: 93 EVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGE 152 EVSSPG+D P+ DF + G V + G ++ GKI+ L Sbjct: 80 EVSSPGLDAPLFYIKDFKNYVGKTVRIKTHDPVGSRRNFKGKIIEI------LSNNDIKL 133 Query: 153 KDMNELQIAISFDSLLSARLI 173 + +I I F ++ ARL+ Sbjct: 134 GLDDGTEILIPFQNISKARLV 154 >gi|118594130|ref|ZP_01551477.1| hypothetical protein MB2181_00640 [Methylophilales bacterium HTCC2181] gi|118439908|gb|EAV46535.1| hypothetical protein MB2181_00640 [Methylophilales bacterium HTCC2181] Length = 145 Score = 138 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 76/152 (50%), Gaps = 11/152 (7%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 +A D+ S I+ ++ ++ + V + ++ LL++F+++ + +T+ DC +S ++ L Sbjct: 1 MAFDVESFIEKMVTQLGYELVDLEIINH-GQLLRVFIDKPE-IVTIDDCVLVSNQLNHAL 58 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 VE RLE+SSPG+DR + + DF R++G + + +++ G + G Sbjct: 59 SVEEEF-DFGRLEISSPGVDRVIKKLEDFGRFDGEKIKIKTRSPISNRRNFSGVLRGIKA 117 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 LE + + I F+++ ARL Sbjct: 118 GFILLEFDGSI--------VEIDFENIDRARL 141 >gi|332976701|gb|EGK13539.1| hypothetical protein HMPREF9373_1208 [Psychrobacter sp. 1501(2011)] Length = 166 Score = 138 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 38/168 (22%), Positives = 71/168 (42%), Gaps = 18/168 (10%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVER------DDGNMTLRDCEEL 72 ++ +I P + + L + LL+I++E D +T+ +C + Sbjct: 5 NKVTQLTDIIAPAVAACDVALWGVEFLPQGGRSLLRIYIESLPEDKAADKQVTIENCAAV 64 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG----DK 128 + +S +L+V + I G Y LEVSSPG+DRP + G + ++ + G + Sbjct: 65 THQVSGVLEVHDPIAGEYVLEVSSPGLDRPFFAPEQMTDYVGQTLNLRLIQAVGAGSSKR 124 Query: 129 QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 +K+ GK+ + + Q I+ D++ A LI D Sbjct: 125 RKVTGKLEQLGDKQLSI-------VTPEGEQFDIALDNIDKANLIYQD 165 >gi|332295449|ref|YP_004437372.1| Ribosome maturation factor rimP [Thermodesulfobium narugense DSM 14796] gi|332178552|gb|AEE14241.1| Ribosome maturation factor rimP [Thermodesulfobium narugense DSM 14796] Length = 159 Score = 138 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 40/152 (26%), Positives = 79/152 (51%), Gaps = 9/152 (5%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + + ++++ V+ ++ F + ++ K +L++F++ + ++L DCE +S+ +S Sbjct: 5 DIKEKLLNIVEKVLLDIGFELYDLEYFKQGKRWILRVFIDNLEKPISLDDCELVSKKLSA 64 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 ILD ++I + LEVSSPGI+R + + SDF R+ G + + +IG + G Sbjct: 65 ILDYYDLIPESFYLEVSSPGIERKLKKDSDFTRFKGEEIIVIFQKP--NISPIIGILEGI 122 Query: 139 SETGFFL------EKEKRGEKDMNELQIAISF 164 G ++ KEK D+ E++I F Sbjct: 123 DSDGNYIIVNTGKSKEKINRNDVKEVRIHFRF 154 >gi|149194181|ref|ZP_01871279.1| hypothetical protein CMTB2_03813 [Caminibacter mediatlanticus TB-2] gi|149136134|gb|EDM24612.1| hypothetical protein CMTB2_03813 [Caminibacter mediatlanticus TB-2] Length = 147 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 18/153 (11%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 ++ +VI+ ++E+ I E + ++++ + G + L DC ++ ISPI D Sbjct: 4 EELKNVIKNIVEDNGCELYDIEETTEGEHKYFRVYITKP-GGVNLNDCTAINNLISPIFD 62 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ ++G Y LEVSSPG++R + + F + G V + D K+ G++ + Sbjct: 63 VEDPVDGKYFLEVSSPGVERKLTKSEHFEKSIGENVKVTL----NDGTKIKGQLKSFVDN 118 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + KEK ++F+ + A+ V Sbjct: 119 IAEIGKEK------------VNFEDIKKAKTYV 139 >gi|113477416|ref|YP_723477.1| hypothetical protein Tery_3979 [Trichodesmium erythraeum IMS101] gi|110168464|gb|ABG53004.1| protein of unknown function DUF150 [Trichodesmium erythraeum IMS101] Length = 172 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 9/148 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 L I P+ + + V ++ +L++ + + L DCE +S AI Sbjct: 24 LVPQIIKFATPIAKSLGLELVGAVFHTNQHPPILRLDIRHPHQDTGLDDCERMSNAIGEQ 83 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD NII Y LE+SSPGI + + DF+ + G VA K IG+++ Sbjct: 84 LDAANIIPEPYLLEISSPGISKFLDNDRDFIAFKGFNVAVNTSEPYKGKNYWIGQLVSRD 143 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSL 167 +T ++ ++ R Q +I + Sbjct: 144 QTAVYINQKGR--------QASIPRSLI 163 >gi|24378910|ref|NP_720865.1| hypothetical protein SMU.417 [Streptococcus mutans UA159] gi|34222873|sp|Q8DVQ3|RIMP_STRMU RecName: Full=Ribosome maturation factor rimP gi|24376793|gb|AAN58171.1|AE014888_9 conserved hypothetical protein [Streptococcus mutans UA159] Length = 163 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 71/166 (42%), Gaps = 11/166 (6%) Query: 15 IFGDMGLAGDISSVIQPVIEEM---SFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCE 70 + + + +++PV+ + F V I + N +L I V++ +G +T+ D Sbjct: 1 MCKEGNTIATLVDIVRPVVAPVIPKPFELVDIEYEKLGGNYVLSILVDKPEG-ITVEDTA 59 Query: 71 ELSQAISPILDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 +L+ ISP+LD + Y LE+SSPG++RP+ + GH + + + Sbjct: 60 DLTDIISPLLDTIKPDPFPEQYMLEISSPGLERPLKTAQSLMNAVGHYINVSLYQAIDKV 119 Query: 129 QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + G + + + ++ + I + + ARL V Sbjct: 120 KVFEGDLTAFDGETLKMTYLDKTQQK----TVTIPYKMVAKARLAV 161 >gi|157414451|ref|YP_001481707.1| hypothetical protein C8J_0131 [Campylobacter jejuni subsp. jejuni 81116] gi|205425409|sp|A8FJU3|RIMP_CAMJ8 RecName: Full=Ribosome maturation factor rimP gi|157385415|gb|ABV51730.1| hypothetical protein C8J_0131 [Campylobacter jejuni subsp. jejuni 81116] gi|315931533|gb|EFV10500.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni 327] Length = 140 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 12/147 (8%) Query: 29 IQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 ++ + +E L+ E + +I+V+++ G + L DC LS+ +SPI DVE + Sbjct: 3 LEALCKEAGLSFYDDELVSENGRKIYRIYVQKE-GGVNLDDCARLSEILSPIFDVEPPVN 61 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 G Y LEVSSPG++R + + F + G +V +K+K KI+ + LE Sbjct: 62 GEYFLEVSSPGLERKLSKIEHFAKSIGELVKITT----NEKEKFEAKIIAVDDENITLEN 117 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 + EK I+F+ + AR V Sbjct: 118 LENKEKT------TINFNDIKKARTFV 138 >gi|313889634|ref|ZP_07823277.1| conserved hypothetical protein [Streptococcus pseudoporcinus SPIN 20026] gi|313121931|gb|EFR45027.1| conserved hypothetical protein [Streptococcus pseudoporcinus SPIN 20026] Length = 176 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 41/166 (24%), Positives = 74/166 (44%), Gaps = 9/166 (5%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCE 70 E + + + + + PVI F V + + + LL I V+R+ G +T+ D Sbjct: 15 EGIVIANQHIIDTVMETVSPVIRP-PFELVDVEYEKMGSDYLLSILVDRE-GGITVEDTT 72 Query: 71 ELSQAISPILDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 EL++ ISP+LD + Y LEVSSPG++RP+ K + G V + + Sbjct: 73 ELTEIISPLLDQISPDPFPDQYMLEVSSPGLERPLKTKEAIEKAVGSYVNVSLYKAIDKV 132 Query: 129 QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + G ++ ++ + + +AI + ++ ARL V Sbjct: 133 KVFQGDLISFDGETLMIDYLDKTRHKV----VAIPYQTVAKARLAV 174 >gi|159027909|emb|CAO89716.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 156 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 1/147 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 L D+ + P+ E + V I K +L++ + G+ L DCE++S+++ Sbjct: 5 LIPDLLHLATPIAENLGLEVVDIVFQTNKRPPVLRVDIRNLAGDTGLEDCEQMSRSLETA 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + I+ G Y LE+SSPGI R + + +F + G V S G Q+ GK+ G Sbjct: 65 LDSQEILPGAYVLEISSPGISRQLSSEREFHSFKGFPVIVTGQDSQGKPQEWRGKLQGRD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDS 166 E +L ++ R I++ D Sbjct: 125 EQSIYLNQKGRSLTIDRTTVISVRLDE 151 >gi|169824467|ref|YP_001692078.1| hypothetical protein FMG_0770 [Finegoldia magna ATCC 29328] gi|303233823|ref|ZP_07320477.1| conserved hypothetical protein [Finegoldia magna BVS033A4] gi|226708072|sp|B0S1E8|RIMP_FINM2 RecName: Full=Ribosome maturation factor rimP gi|167831272|dbj|BAG08188.1| conserved hypothetical protein associated with Nus operon [Finegoldia magna ATCC 29328] gi|302495257|gb|EFL55009.1| conserved hypothetical protein [Finegoldia magna BVS033A4] Length = 154 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 70/149 (46%), Gaps = 9/149 (6%) Query: 29 IQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 + P+I++ + +L ++E+DDG +++ DCE ++ IS LD + I Sbjct: 14 LSPLIKDTGIEFYDVEYSNNNGKNILTFYIEKDDGLISIDDCELINNKISDKLDEIDPIS 73 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LE++S I P R DF + G+VV + K++ G + ++T LE Sbjct: 74 DPYYLEIASVDITTPFTRDKDFKKNLGNVVIVNLYQKLDSKKEFKGILTDFNDTEISLEL 133 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIVTD 176 EK+ +I I ++ S +L + D Sbjct: 134 EKK--------EIKIERSNISSIKLSLFD 154 >gi|317495159|ref|ZP_07953529.1| hypothetical protein HMPREF0432_00131 [Gemella moribillum M424] gi|316914581|gb|EFV36057.1| hypothetical protein HMPREF0432_00131 [Gemella moribillum M424] Length = 154 Score = 137 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 74/157 (47%), Gaps = 6/157 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 M + + ++ ++ + + ++E + L+I+ ++ DG +TL DC LS+ ++ Sbjct: 1 MSIVQRVKAIADEQTKDTVYSLYDVEYVKEGSEFFLRIYFDK-DGGLTLDDCVLLSEKLA 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD E+ I Y LEVSSPGI+R + + + G V + ++++ G I+ Sbjct: 60 EELDKEDFISDKYYLEVSSPGIERELRNLEEVIDSIGKHVYIKTYEKVDNQKEFYGDILD 119 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + +E + + + IS++ + RL V Sbjct: 120 VEDKEITIEYKDKARVKKSI----ISYEKIAKIRLAV 152 >gi|237734615|ref|ZP_04565096.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229382435|gb|EEO32526.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 167 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 77/157 (49%), Gaps = 5/157 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 M L I ++I+P++E I L+E L+IFVE+++G++ + C +S+AIS Sbjct: 13 MELLDTIKTLIKPILENNDVYLDDIEYLQENGEWYLRIFVEKNEGSLDMDTCVAVSEAIS 72 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +D E+ I+G Y LEVSSPG+++P+ G V + + + ++ G I Sbjct: 73 LKMDEEDPIKGEYYLEVSSPGVEKPLKTFEQVKASVGKYVYAKFINPTAGMDEVEGFIKT 132 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + K +I I + ++ RL V Sbjct: 133 IEDETIEFEYLVKNIKK----RIKIDYSNIKFIRLAV 165 >gi|259645132|sp|Q10XM0|RIMP_TRIEI RecName: Full=Ribosome maturation factor rimP Length = 153 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 9/148 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 L I P+ + + V ++ +L++ + + L DCE +S AI Sbjct: 5 LVPQIIKFATPIAKSLGLELVGAVFHTNQHPPILRLDIRHPHQDTGLDDCERMSNAIGEQ 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD NII Y LE+SSPGI + + DF+ + G VA K IG+++ Sbjct: 65 LDAANIIPEPYLLEISSPGISKFLDNDRDFIAFKGFNVAVNTSEPYKGKNYWIGQLVSRD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSL 167 +T ++ ++ R Q +I + Sbjct: 125 QTAVYINQKGR--------QASIPRSLI 144 >gi|134095612|ref|YP_001100687.1| hypothetical protein HEAR2435 [Herminiimonas arsenicoxydans] gi|133739515|emb|CAL62566.1| Conserved hypothetical protein [Herminiimonas arsenicoxydans] Length = 172 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 77/158 (48%), Gaps = 16/158 (10%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVE-----RDDGNMTLRDCEELSQAISP 78 +S++I+ + M + V + L++++++ D G++T+ DCE+++ + Sbjct: 13 QLSALIEKTVVGMGYELVNFE--QAARGLVRVYIDFTPEDADKGSITVEDCEKVTHQLLH 70 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS---GDKQKLIGKI 135 +L VEN + RLEVSSPG+DRP+ + SD++R+ G ++ L +++ G + Sbjct: 71 VLTVEN--ANYERLEVSSPGLDRPLKKLSDYVRFAGAEALVKLRLPMPNAANRKSFQGIL 128 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 LE E + ++ + + A L+ Sbjct: 129 QEPVGETLALEFEG----NEGPAKLEFTLADVDKAHLV 162 >gi|307747095|gb|ADN90365.1| UPF0090 protein [Campylobacter jejuni subsp. jejuni M1] Length = 140 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 71/147 (48%), Gaps = 12/147 (8%) Query: 29 IQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 ++ + +E L+ E + +I+V+++ G + L DC LS+ +SPI DVE + Sbjct: 3 LEALCKEAGLSFYDDELVSENGRKIYRIYVQKE-GGVNLDDCARLSEILSPIFDVEPPVN 61 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 G Y LEVSSPG++R + + F + G +V +K+K KI+ + LE Sbjct: 62 GEYFLEVSSPGLERKLSKIEHFAKSIGELVKITT----NEKEKFEAKIIAVDDENITLEN 117 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 + EK I+F + A+ V Sbjct: 118 LENKEKT------TINFSDIRKAKTFV 138 >gi|57237145|ref|YP_178157.1| hypothetical protein CJE0133 [Campylobacter jejuni RM1221] gi|218561819|ref|YP_002343598.1| hypothetical protein Cj0138 [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|34223082|sp|Q9PIY9|RIMP_CAMJE RecName: Full=Ribosome maturation factor rimP gi|81354202|sp|Q5HX28|RIMP_CAMJR RecName: Full=Ribosome maturation factor rimP gi|57165949|gb|AAW34728.1| conserved hypothetical protein [Campylobacter jejuni RM1221] gi|112359525|emb|CAL34309.1| conserved hypothetical protein Cj0138 [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315057578|gb|ADT71907.1| hypothetical protein CJS3_0137 [Campylobacter jejuni subsp. jejuni S3] gi|315926922|gb|EFV06284.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 140 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 12/147 (8%) Query: 29 IQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 ++ + +E L+ E + +I+V+++ G + L DC LS+ +SPI DVE+ + Sbjct: 3 LEALCKEAGLSFYDDELVSENGRKIYRIYVQKE-GGVNLDDCARLSEILSPIFDVESPVN 61 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 G Y LEVSSPG++R + + F + G +V +K+K KI+ + LE Sbjct: 62 GEYFLEVSSPGLERKLSKIEHFAKSIGELVKITT----NEKEKFEAKIIAVDDENITLEN 117 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 + EK I+F+ + AR V Sbjct: 118 LENKEKT------TINFNDIKKARTFV 138 >gi|169350437|ref|ZP_02867375.1| hypothetical protein CLOSPI_01205 [Clostridium spiroforme DSM 1552] gi|169292757|gb|EDS74890.1| hypothetical protein CLOSPI_01205 [Clostridium spiroforme DSM 1552] Length = 155 Score = 137 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 5/157 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 M L I +I+P+++ I +++K L+IFVE+++G + + C +S+ IS Sbjct: 1 MELLNKIKEMIEPILQSNDVYLDDIEYVQDKGEWYLRIFVEKNEGFLDMDTCVAVSEQIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD E+ I+G Y LEVSSPG+++P+ G V + ++ G I Sbjct: 61 QKLDEEDPIKGEYYLEVSSPGVEKPLKTFEQVKSSIGKYVYAKFYNPIAGLDEVEGFINS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + K +++ ++++ RL V Sbjct: 121 IEDETIEFEYLVKNIKKKVKIE----YNNIKFIRLAV 153 >gi|222099942|ref|YP_002534510.1| hypothetical protein CTN_0968 [Thermotoga neapolitana DSM 4359] gi|254807290|sp|B9K861|RIMP_THENN RecName: Full=Ribosome maturation factor rimP gi|221572332|gb|ACM23144.1| Hypothetical Protein CTN_0968 [Thermotoga neapolitana DSM 4359] Length = 150 Score = 137 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 14/159 (8%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELS 73 +F +M + + + + E+ I E + +L++ ++ G +++RDCE S Sbjct: 1 MFEEM-IVEKVRKEAERIAEKQGLEIFDIQYRRESRGWVLRVVIDNPVGYVSVRDCELFS 59 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 + + LD E++IE Y LEVSSPG+DRP+ D+ R+ G + D + IG Sbjct: 60 RELERFLDREDLIEHSYTLEVSSPGLDRPLRGPKDYQRFTGKLAKIITK----DGKTFIG 115 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +I + + EK I + + A L Sbjct: 116 RIESFVDGIVTISDEKGKH--------EIDIEDVRKANL 146 >gi|254468932|ref|ZP_05082338.1| hypothetical protein KB13_1157 [beta proteobacterium KB13] gi|207087742|gb|EDZ65025.1| hypothetical protein KB13_1157 [beta proteobacterium KB13] Length = 158 Score = 137 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 77/153 (50%), Gaps = 10/153 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 G D+ +I I+ + + V+ + L++IF++ + +++ DC ++S ++ + Sbjct: 12 GFVMDLEKIISESIQNIGYELVECE-HNHNSGLIRIFIDNGN-LISVDDCVKVSNHLNRV 69 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 L VE + RLEVSSPG+DR +++ +D+ R+ G + ++ +++K GK++ + Sbjct: 70 LSVE-LDYDFSRLEVSSPGVDRKLIKLADYKRFEGEKIKIKLYSPINNQKKFDGKLIASD 128 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 E + + + FD + ARL Sbjct: 129 EKKIKILLSDEKI-------LEVPFDEIQMARL 154 >gi|283955583|ref|ZP_06373077.1| hypothetical protein C1336_000030016 [Campylobacter jejuni subsp. jejuni 1336] gi|283792926|gb|EFC31701.1| hypothetical protein C1336_000030016 [Campylobacter jejuni subsp. jejuni 1336] Length = 140 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 12/147 (8%) Query: 29 IQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 ++ + +E L+ E + +I+V+++ G + L DC LS+ +SPI DVE + Sbjct: 3 LEALCKEAGLSFYDDELVSENGRKIYRIYVQKE-GGVNLDDCARLSEILSPIFDVEPPVN 61 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 G Y LEVSSPG++R + + F + G +V + +K+K KI+ + LE Sbjct: 62 GEYFLEVSSPGLERKLSKIEHFAKSIGELVKIT----ANEKEKFEAKIIAVDDENITLEN 117 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 + EK I+F+ + AR V Sbjct: 118 LENKEKT------TINFNDIKKARTFV 138 >gi|253995582|ref|YP_003047646.1| hypothetical protein Mmol_0209 [Methylotenera mobilis JLW8] gi|253982261|gb|ACT47119.1| protein of unknown function DUF150 [Methylotenera mobilis JLW8] Length = 161 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 83/166 (50%), Gaps = 26/166 (15%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDD-----GNMTLRDCEELSQAIS 77 D+ ++I+ + ++ + V + + + LL++F+++ + ++ + DC +S + Sbjct: 2 QDLQTLIEKSVSQLGYELVDLE-ISNRGKLLRVFIDKQNPADSKDSVNIDDCVLVSNQLG 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD---------- 127 +L VE+ I + RLEVSSPG+DR + +++D++R+ G V+ ++ + D Sbjct: 61 NLLAVEHEI-DYDRLEVSSPGMDRVLKKEADYVRFVGERVSIKLRVGIKDEGPNATETTL 119 Query: 128 -KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ +G I G + LE E K ++ ++ ARL Sbjct: 120 PRKTFLGLIQGVEDGHLLLEFEGFTYK--------MALSNIDKARL 157 >gi|152981795|ref|YP_001354187.1| hypothetical protein mma_2497 [Janthinobacterium sp. Marseille] gi|151281872|gb|ABR90282.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 170 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 75/158 (47%), Gaps = 16/158 (10%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVE-----RDDGNMTLRDCEELSQAISP 78 +S++I+ + M + V + L+++F++ D G +T+ DCE+++ + Sbjct: 11 QLSALIEKTVVGMGYELVNFE--QAARGLVRVFIDFTPEDADKGAITVEDCEKVTHQLLH 68 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS---GDKQKLIGKI 135 +L VEN + RLEVSSPG+DRP+ + SD++R+ G ++ + +++ G + Sbjct: 69 VLTVEN--ANYERLEVSSPGLDRPLKKLSDYVRFAGAEALVKLRMPMPNAANRKSFQGIL 126 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 LE E ++ + + A L+ Sbjct: 127 QEPVGETLALEFEGND----GPAKLEFTLADVDKAHLV 160 >gi|284925431|gb|ADC27783.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni IA3902] Length = 140 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 12/147 (8%) Query: 29 IQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 ++ + +E L+ E + +I+V+++ G + L DC LS+ +SPI DVE+ + Sbjct: 3 LEALCKEAGLSFYDDELVSENGKKIYRIYVQKE-GGVNLDDCARLSEILSPIFDVESPVN 61 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 G Y LEVSSPG++R + + F + G +V +K+K KI+ + LE Sbjct: 62 GEYFLEVSSPGLERKLSKIEHFAKSIGELVKITT----NEKEKFEAKIIAVDDENITLEN 117 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 + EK I+F+ + AR V Sbjct: 118 LENKEKT------TINFNDIKKARTFV 138 >gi|238854743|ref|ZP_04645073.1| conserved hypothetical protein [Lactobacillus jensenii 269-3] gi|260663975|ref|ZP_05864828.1| conserved hypothetical protein [Lactobacillus jensenii SJ-7A-US] gi|282932866|ref|ZP_06338263.1| conserved hypothetical protein [Lactobacillus jensenii 208-1] gi|313472266|ref|ZP_07812758.1| SP14.3 protein [Lactobacillus jensenii 1153] gi|238832533|gb|EEQ24840.1| conserved hypothetical protein [Lactobacillus jensenii 269-3] gi|239529662|gb|EEQ68663.1| SP14.3 protein [Lactobacillus jensenii 1153] gi|260561861|gb|EEX27830.1| conserved hypothetical protein [Lactobacillus jensenii SJ-7A-US] gi|281302901|gb|EFA95106.1| conserved hypothetical protein [Lactobacillus jensenii 208-1] Length = 158 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 73/159 (45%), Gaps = 7/159 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 + +++++ P+ E+ V + ++E+N L+I+V+R + + + + LS+ +S Sbjct: 2 TKIVDLVTNLVSPIAEKRGDELVDVEYVKEQNQYYLRIYVDRGESGIDIEEIAALSEMVS 61 Query: 78 PILDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + Y LE+SSPG++RP+ + D+ + + ++ G + Sbjct: 62 EELDKLNPDPFTEPYMLELSSPGLERPIKNERDWEKAVNKYIHVACYQKIDGQKAFDGTL 121 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + L+ + + ++ I ++ +AR + Sbjct: 122 LSKDDDKITLKIKIKTRTK----ELEIPVGAIANARFAI 156 >gi|329915248|ref|ZP_08276236.1| clustered with transcription termination protein NusA [Oxalobacteraceae bacterium IMCC9480] gi|327544953|gb|EGF30294.1| clustered with transcription termination protein NusA [Oxalobacteraceae bacterium IMCC9480] Length = 161 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 74/158 (46%), Gaps = 16/158 (10%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVE-----RDDGNMTLRDCEELSQAISP 78 + +I+ + M + V + LL+++++ + G +T+ DCE+++ + Sbjct: 2 QLLELIEKTVVGMEYELVDFE--QAARGLLRVYIDFPPEQAERGMITVEDCEKVTHQLLH 59 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD---KQKLIGKI 135 +L VEN + RLEVSSPG+DRP+ + +D+LR+ G ++ + ++ G + Sbjct: 60 VLTVENAVYE--RLEVSSPGLDRPLKKLADYLRFAGMEAIVKLRMPMPGAANRKSFQGIL 117 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 LE E + M E +A + A L+ Sbjct: 118 HAPEGDQIKLEFEGKEGSAMLEFTLA----DVDKAHLV 151 >gi|166364177|ref|YP_001656450.1| YhbC family protein [Microcystis aeruginosa NIES-843] gi|226734161|sp|B0JU70|RIMP_MICAN RecName: Full=Ribosome maturation factor rimP gi|166086550|dbj|BAG01258.1| YhbC family protein [Microcystis aeruginosa NIES-843] Length = 156 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 69/147 (46%), Gaps = 1/147 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 L D+ + P+ E + V I K +L++ + G+ L DCE++S+A+ Sbjct: 5 LIPDLLHLAIPIAENLGLEVVDIVFQTNKRPPVLRVDIRNLAGDTGLEDCEQMSRALETA 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + I+ G Y LE+SSPGI R + + +F + G V S G Q+ GK+ G Sbjct: 65 LDSQEILPGAYVLEISSPGISRQLSSEREFQSFKGFPVIVTGQDSQGKPQEWRGKLQGRD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDS 166 E +L ++ R I++ D Sbjct: 125 EQSIYLNQKGRSLTIDRTTVISVRLDE 151 >gi|302380608|ref|ZP_07269073.1| conserved hypothetical protein [Finegoldia magna ACS-171-V-Col3] gi|302311551|gb|EFK93567.1| conserved hypothetical protein [Finegoldia magna ACS-171-V-Col3] Length = 154 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 9/149 (6%) Query: 29 IQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 + P+I++ + +L ++E+DDG +++ DCE ++ IS LD + I Sbjct: 14 LSPLIKDTGIEFYDVEYSNNNGKNILTFYIEKDDGLISIDDCELINNKISDKLDEIDPIS 73 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LE++S I P R DF + G+VV + +++ G + ++ LE Sbjct: 74 DPYYLEIASVDITTPFTRDKDFKKNLGNVVIVNLYQKLDSQKEFKGILKDFNDKEISLEL 133 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIVTD 176 EK+ +I I ++ S +L + D Sbjct: 134 EKK--------EIKIERSNISSIKLSLFD 154 >gi|332366409|gb|EGJ44160.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK355] Length = 177 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + VI+P I + V I + + +L +FV++ +G +T+ D +L+ ISP+ Sbjct: 25 IVELVREVIEPAILA-PYELVDIEYGKMGGDYVLSVFVDKPEG-ITVNDTADLTDIISPL 82 Query: 80 LDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LEV+SPG++RP+ K G + + + ++ G ++ Sbjct: 83 LDQIKPDPFPEQYFLEVTSPGLERPLKTKEQLADAVGSYIHVSLYKAVDKQKVFEGTLLS 142 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + + ++ I + + ARL V Sbjct: 143 FEEDVLRMEYLDKTRRK----EVEILYSLVSKARLAV 175 >gi|317484450|ref|ZP_07943363.1| hypothetical protein HMPREF0179_00714 [Bilophila wadsworthia 3_1_6] gi|316924310|gb|EFV45483.1| hypothetical protein HMPREF0179_00714 [Bilophila wadsworthia 3_1_6] Length = 205 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 65/169 (38%), Gaps = 20/169 (11%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDG-----------------NMTLR 67 I+ ++ P+ + + L + +I+V+ G +T+ Sbjct: 10 ITELVTPLAASLGLAVWGVELGGAARPIARIYVDVLPGAEPAPSEKASDDDLLPQGVTID 69 Query: 68 DCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG- 126 C ELS+ LDVE+ ++ LE+SSPG+ RP + + G + + Sbjct: 70 QCAELSRLAGLALDVEDPFATNWTLEISSPGLQRPFFKIDQLRNYVGRELEVVLAAPLDT 129 Query: 127 --DKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 ++K G + ++ F L K ++ I++ + A L+ Sbjct: 130 WPGRKKFSGVLAAVADEEFTLSLPDTSRKAEEPEEVTIAWPFVRKATLV 178 >gi|167756907|ref|ZP_02429034.1| hypothetical protein CLORAM_02456 [Clostridium ramosum DSM 1402] gi|167703082|gb|EDS17661.1| hypothetical protein CLORAM_02456 [Clostridium ramosum DSM 1402] Length = 155 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 77/157 (49%), Gaps = 5/157 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 M L I ++I+P++E I L+E L+IFVE+++G++ + C +S+AIS Sbjct: 1 MELLDTIKTLIKPILENNDVYLDDIEYLQENGEWYLRIFVEKNEGSLDMDTCVAVSEAIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +D E+ I+G Y LEVSSPG+++P+ G V + + + ++ G I Sbjct: 61 LKMDEEDPIKGEYYLEVSSPGVEKPLKTFEQVKASVGKYVYAKFINPTAGMDEVEGFIKT 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + K +I I + ++ RL V Sbjct: 121 IEDETIEFEYLVKNIKK----RIKIDYSNIKFIRLAV 153 >gi|300704338|ref|YP_003745941.1| hypothetical protein RCFBP_20140 [Ralstonia solanacearum CFBP2957] gi|299072002|emb|CBJ43332.1| conserved protein of unknown function [Ralstonia solanacearum CFBP2957] Length = 149 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 69/142 (48%), Gaps = 12/142 (8%) Query: 36 MSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVS 95 M + V++ LL++++++ + + + DCE++S ++ + +VEN+ + RLEVS Sbjct: 1 MGYELVEVERAPAG--LLRVYIDQAETGIVIEDCEKVSHQLTRVFEVENV--HYERLEVS 56 Query: 96 SPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE----TGFFLEKEKRG 151 SPG+DRP+ +DF R+ G V + L ++ G + + LE E + Sbjct: 57 SPGLDRPLRTLTDFTRFAGQEVKVTLRLPVDGQKNFTGIVQAPAGEPGQERIGLEFEGKD 116 Query: 152 EKDMNELQIAISFDSLLSARLI 173 + + L ARL+ Sbjct: 117 ----GPALLEFTLSELDRARLV 134 >gi|327459331|gb|EGF05677.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK1] Length = 177 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 72/157 (45%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + VI+P I + + I + + +L +FV++ +G +T+ D +L+ ISP+ Sbjct: 25 IVELVREVIEPAILA-PYELIDIEYGKMGGDYVLSVFVDKSEG-ITVNDTADLTDIISPL 82 Query: 80 LDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LEV+SPG++RP+ K G + + + ++ G ++ Sbjct: 83 LDQIKPDPFPEQYFLEVTSPGLERPLKTKEQLADAVGSYINVSLYKAVDKQKVFEGTLLS 142 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + + ++ I + + ARL V Sbjct: 143 FEEDVLHMEYLDKTRRK----EVEIPYSLVSKARLAV 175 >gi|319957625|ref|YP_004168888.1| hypothetical protein Nitsa_1895 [Nitratifractor salsuginis DSM 16511] gi|319420029|gb|ADV47139.1| protein of unknown function DUF150 [Nitratifractor salsuginis DSM 16511] Length = 146 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 14/148 (9%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLL-QIFVERDDGNMTLRDCEELSQAISPILDVE 83 + I ++ + E + + ++++ + DG + L C ++S +SP+LDV Sbjct: 3 LEDQIAKIVRSHGAEFYDTETVNENDQTIYRVYITK-DGGVDLDTCADISNDLSPLLDVH 61 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + G Y LEVSSPGI+R + + F G V + +KL G + E G Sbjct: 62 PPVGGKYFLEVSSPGIERTLKKPRHFQSAVGERVKLK----IAGGEKLRGILESADEEGI 117 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSAR 171 L + E + S+ +L AR Sbjct: 118 ILRNK--------EGEHRYSYPQILKAR 137 >gi|126640414|ref|YP_001083398.1| hypothetical protein A1S_0334 [Acinetobacter baumannii ATCC 17978] Length = 157 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 23/161 (14%) Query: 34 EEMSFRSVQISLL-EEKNLLLQIFVERD-----------DG------NMTLRDCEELSQA 75 E I L + K LL+I+++R DG + + DC ++Q Sbjct: 2 EACGVDLWGIEFLPQGKRSLLRIYIDRPVDENAEPVINEDGEVEQGRGIGVEDCVRVTQQ 61 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 + +LDV + I G Y LEVSSPG DRP + + G VA ++ + +++K K+ Sbjct: 62 VGAMLDVHDPISGEYALEVSSPGWDRPFFQLEQLQGYIGQQVALRLIAAVENRRKFQAKL 121 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 + ++ E G+ ++ I +++ A LI D Sbjct: 122 LAVDLENEEIQVEVEGKHVLD-----IDSNNIDKANLIYQD 157 >gi|124267112|ref|YP_001021116.1| hypothetical protein Mpe_A1923 [Methylibium petroleiphilum PM1] gi|226732163|sp|A2SH42|RIMP_METPP RecName: Full=Ribosome maturation factor rimP gi|124259887|gb|ABM94881.1| conserved hypothetical protein [Methylibium petroleiphilum PM1] Length = 177 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 75/157 (47%), Gaps = 18/157 (11%) Query: 26 SSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNM---------TLRDCEELSQAI 76 + ++ + + V+ LL++F++R G + T+ DCE++++ + Sbjct: 4 QAAVEKTVTGFGYELVECE--RGSQGLLRVFIDRVPGQVYDGGPGEFVTVEDCEKVTRQL 61 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 +L+VEN + RLEVSSPG+DRP+ + +D+ R+ G + + L ++K G + Sbjct: 62 QYVLEVENC--DYSRLEVSSPGLDRPLKKSADYARFAGERIDITLKLPFQGRKKYQGVL- 118 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 S + L + + + + + + ARL+ Sbjct: 119 AASGEAWELHFNDGKQDQV----LGFTLEEVRDARLV 151 >gi|58427438|gb|AAW76475.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 160 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 63/125 (50%), Gaps = 11/125 (8%) Query: 53 LQIFVE-----RDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKS 107 ++++++ + + + + DCE +S+ +S LDVE+ I GHY LEVSSPG+DRP+ Sbjct: 1 MRLYIDVPLAEQPERVINVDDCERVSREVSAQLDVEDPISGHYTLEVSSPGVDRPLFTLE 60 Query: 108 DFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSL 167 F R G + L+ +++ G+I+ ++ + I FD++ Sbjct: 61 QFARHAGESTKIVLKLAQDGRRRFQGEILRIDAEA------GAVVFAIDGKDVQIGFDNI 114 Query: 168 LSARL 172 AR+ Sbjct: 115 DKARI 119 >gi|150021291|ref|YP_001306645.1| hypothetical protein Tmel_1413 [Thermosipho melanesiensis BI429] gi|259645126|sp|A6LMV9|RIMP_THEM4 RecName: Full=Ribosome maturation factor rimP gi|149793812|gb|ABR31260.1| protein of unknown function DUF150 [Thermosipho melanesiensis BI429] Length = 147 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 61/154 (39%), Gaps = 14/154 (9%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + + + Q + EE + + L+I ++ ++ +DCE +S+ + Sbjct: 3 DIVSQVKDIAQKICEEFHLELFDVKYYNKSGRWFLEIIIDNPYDYISTKDCENVSRKLEF 62 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LD NII Y L VSSPG++RP+ DF R+ G + + IG I Sbjct: 63 ELDKINIIPNKYYLTVSSPGLNRPLRNVKDFERFTGKKAKIKTREN-----TYIGYIKNV 117 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + E + + I F+ + A L Sbjct: 118 VDNIITFETDGK--------FIEFKFEEIKKANL 143 >gi|289805472|ref|ZP_06536101.1| hypothetical protein Salmonellaentericaenterica_13917 [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 86 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 1/87 (1%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I +E + + V I + + L+I+++ +DG + + DC ++S +S +LDVE+ I Sbjct: 1 MITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVEDPIS 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNG 114 Y LEVSSPG+DRPM + + G Sbjct: 60 VAYNLEVSSPGLDRPMFTADHYASFRG 86 >gi|300691723|ref|YP_003752718.1| hypothetical protein RPSI07_2078 [Ralstonia solanacearum PSI07] gi|299078783|emb|CBJ51443.1| conserved protein of unknown function [Ralstonia solanacearum PSI07] Length = 149 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 12/142 (8%) Query: 36 MSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVS 95 M + V++ LL++++++ + + + DCE++S ++ + +VEN+ + RLEVS Sbjct: 1 MGYELVEVERAPAG--LLRVYIDQAETGIVIEDCEKVSHQLTRVFEVENV--NYERLEVS 56 Query: 96 SPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE----TGFFLEKEKRG 151 SPG+DRP+ +DF R+ G + L ++ G + + LE E + Sbjct: 57 SPGLDRPLRTLTDFTRFAGQEAKVTLRLPVNGQKNFTGIVQAPAGEPGQERIGLEFEGKD 116 Query: 152 EKDMNELQIAISFDSLLSARLI 173 + + L ARL+ Sbjct: 117 ----GPALLEFTLSELDRARLV 134 >gi|259501584|ref|ZP_05744486.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] gi|302191442|ref|ZP_07267696.1| hypothetical protein LineA_05504 [Lactobacillus iners AB-1] gi|309807190|ref|ZP_07701164.1| conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] gi|259167102|gb|EEW51597.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] gi|308166411|gb|EFO68616.1| conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] Length = 158 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 72/156 (46%), Gaps = 7/156 (4%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPIL 80 + VI P++ V I ++E N L+I+V+R+ + + + LS+++S L Sbjct: 5 IDKVIEVITPLVHARGDELVDIEYVKENNQNYLRIYVDREPNGIDIDEIATLSESVSEQL 64 Query: 81 DVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 D+ + + Y LE+SSPG++RP+ ++D+ + V + ++ G ++ Sbjct: 65 DLINPDPLPDPYILELSSPGVERPIKTEADWCKAKNDYVHVGLYKKINGQKSYEGTLLDY 124 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 LE + + +IAI + + + R + Sbjct: 125 DMDKIILEI----KIKTQQKKIAIPRNMIANIRFAI 156 >gi|315653431|ref|ZP_07906353.1| protein of hypothetical function DUF150 [Lactobacillus iners ATCC 55195] gi|315489356|gb|EFU78996.1| protein of hypothetical function DUF150 [Lactobacillus iners ATCC 55195] Length = 158 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 71/156 (45%), Gaps = 7/156 (4%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPIL 80 + VI P++ V I ++E N L+I+V+R+ + + + LS+++S L Sbjct: 5 IDKVIEVITPLVHARGDELVDIEYVKENNQNYLRIYVDREPNGIDIDEIATLSESVSEQL 64 Query: 81 DVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 D+ + + Y LE+SSPG++RP+ ++D+ + V + ++ G ++ Sbjct: 65 DLINPDPLPDPYILELSSPGVERPIKTEADWCKAKNDYVHVGLYKKINGQKSYEGTLLDY 124 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 LE + + +I I + + + R + Sbjct: 125 DMDKIILEI----KIKTQQQKITIPRNMIANIRFAI 156 >gi|268319260|ref|YP_003292916.1| hypothetical protein FI9785_775 [Lactobacillus johnsonii FI9785] gi|262397635|emb|CAX66649.1| conserved hypothetical protein [Lactobacillus johnsonii FI9785] Length = 158 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 70/159 (44%), Gaps = 7/159 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 + ++ V+ P+ E V + ++EK L+I+V+R + + + LS+ +S Sbjct: 2 TKVTELVADVVTPLAEARGDELVDVEYVKEKKQYYLRIYVDRRPVGIDIEEIANLSELVS 61 Query: 78 PILDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + Y LE+SSPG++RP+ + D+ R G + + ++ G + Sbjct: 62 EKLDKLDPDPFPEPYILELSSPGLERPIKNEKDWERAKGSYIHVSLYQKIDGEKTFEGTL 121 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ LE + + + I I + S+R V Sbjct: 122 KDLNQDQIVLEVKIKTRRK----DITIPRKVIASSRFAV 156 >gi|260889855|ref|ZP_05901118.1| UPF0090 protein [Leptotrichia hofstadii F0254] gi|260860461|gb|EEX74961.1| UPF0090 protein [Leptotrichia hofstadii F0254] Length = 162 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 + + I+ ++EM+ + + + L+++VE+ DG TL DC + S+ I I Sbjct: 4 ILNEFEKKIKQHLKEMNLELADLEYVRDGGYNYLRVYVEKLDGTTTLDDCIDFSREIDGI 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 D ++IE + LEVS+PG++R + + DF+R+ G + + + +K IGK+ Sbjct: 64 AD--DLIEEKFFLEVSTPGVERRLRKPKDFVRFLGERINVQAKSNIEGAKKFIGKLEKFE 121 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 FL +K E + I L A LI Sbjct: 122 NDTVFLLDDK------LEKIVEIPLSKLKKANLI 149 >gi|71064648|ref|YP_263375.1| hypothetical protein Psyc_0067 [Psychrobacter arcticus 273-4] gi|91207994|sp|Q4FVL7|RIMP_PSYA2 RecName: Full=Ribosome maturation factor rimP gi|71037633|gb|AAZ17941.1| conserved hypothetical protein [Psychrobacter arcticus 273-4] Length = 166 Score = 134 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 71/167 (42%), Gaps = 18/167 (10%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVER------DDGNMTLRDCEELSQ 74 +++++I P + I + N LL+I++E + +T+ +C ++ Sbjct: 7 VTELTNIIAPAVAACDVALWGIEFAPQGNRSLLRIYIEALPEEQAQNKQVTIENCAAVNH 66 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD----KQK 130 +S IL+V + I G + LEVSSPG DR + G V+ ++ + G+ ++K Sbjct: 67 QVSGILEVHDPIAGEFILEVSSPGFDRAFFSDEQMHAYVGQTVSLRLIQAIGEGDKKRRK 126 Query: 131 LIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 G + T L + Q I+ ++ A LI D Sbjct: 127 ATGTLNSIDGTSLKL-------TATDGEQFEIALSNIDKANLIYEDA 166 >gi|257791561|ref|YP_003182167.1| hypothetical protein Elen_1813 [Eggerthella lenta DSM 2243] gi|325833208|ref|ZP_08165714.1| hypothetical protein HMPREF9404_3885 [Eggerthella sp. HGA1] gi|257475458|gb|ACV55778.1| protein of unknown function DUF150 [Eggerthella lenta DSM 2243] gi|325485590|gb|EGC88058.1| hypothetical protein HMPREF9404_3885 [Eggerthella sp. HGA1] Length = 159 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 59/152 (38%), Gaps = 11/152 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + P E+ V + + K ++++++ DG ++ + I+ ++ Sbjct: 6 EQQLLDALAPRAEQEGVEIVTVEVAGAKKAPTIRVYIDTPDG-VSFDELSSAQAWINDLM 64 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D + G Y LEVSSPGIDRP+ F R+ G + + G I Sbjct: 65 DELDPFPGAYTLEVSSPGIDRPLRTAEHFARFVGDTAVLKT-QPVDGRGSWTGAIASVEG 123 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 L D++ + I D++ A L Sbjct: 124 DVVVL--------DVDGAEARIPMDTIKRAHL 147 >gi|86153804|ref|ZP_01072007.1| YlxS [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842765|gb|EAQ59977.1| YlxS [Campylobacter jejuni subsp. jejuni HB93-13] Length = 140 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 12/147 (8%) Query: 29 IQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 ++ + +E L+ E + +I+V+++ G + L DC LS+ +SPI DVE + Sbjct: 3 LEALCKEAELSFYDDELVSENGRKIYRIYVQKE-GGVNLDDCARLSEILSPIFDVEPPVN 61 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 G Y LEVSSPG++R + + F + G +V +K+K KI+ + LE Sbjct: 62 GEYFLEVSSPGLERKLSKIEHFAKSIGELVKITT----NEKEKFEAKIIAVDDENITLEN 117 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 + EK I+F+ + AR V Sbjct: 118 LENKEKT------TINFNDIKKARTFV 138 >gi|34558305|ref|NP_908120.1| hypothetical protein WS2018 [Wolinella succinogenes DSM 1740] gi|51316745|sp|Q7MQU0|RIMP_WOLSU RecName: Full=Ribosome maturation factor rimP gi|34484024|emb|CAE11020.1| conserved hypothetical protein [Wolinella succinogenes] Length = 142 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 41/146 (28%), Positives = 73/146 (50%), Gaps = 17/146 (11%) Query: 26 SSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 I+ +++ + LL+E +L++++ ++ G ++L DC +S ISP+LDVE+ Sbjct: 7 QEKIEKLVQSCGCNLYDLLLLKENERSILRLYITKEVG-VSLDDCAMVSDLISPLLDVED 65 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 + G Y LEVSSPGI+RP+ R + + G + + DK ++ G+I ET Sbjct: 66 PLAGEYFLEVSSPGIERPLKRPAHYQHALGELARIK----FADKNEIEGEIEAADETSVK 121 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSA 170 L+ E+ I + + A Sbjct: 122 LKGEEP-----------IPYSLIKKA 136 >gi|315123740|ref|YP_004065744.1| YlxS [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315017462|gb|ADT65555.1| YlxS [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 140 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 12/147 (8%) Query: 29 IQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 ++ + +E L+ E + +I+V+++ G + L DC LS+ +SPI DVE + Sbjct: 3 LEALCKEAELSFYDDELVSENGRKIYRIYVQKE-GGVNLDDCARLSEILSPIFDVEPPVN 61 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 G Y LEVSSPG++R + R F + G +V +K+K KI+ + LE Sbjct: 62 GEYFLEVSSPGLERKLSRIEHFAKSIGELVKITT----NEKEKFEAKIIAVDDENITLEN 117 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 + EK I+F+ + AR + Sbjct: 118 LENKEKT------TINFNDIKKARTFI 138 >gi|262037341|ref|ZP_06010806.1| conserved hypothetical protein [Leptotrichia goodfellowii F0264] gi|261748598|gb|EEY35972.1| conserved hypothetical protein [Leptotrichia goodfellowii F0264] Length = 178 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 11/166 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 + IQ ++ + + ++E L+++VE+ DG +L DC ELS I + Sbjct: 20 ILSKFEKEIQDSLDSLDLELSDLEYIQEGGYNYLRVYVEKKDGTTSLDDCIELSSKIDGL 79 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 D N+I + LEVS+PG++R + ++ DF+R++G + K+ GK+ Sbjct: 80 AD--NLINEKFYLEVSTPGVERKLKKEKDFIRFSGEKIKLHSKSQIEGKKTFEGKLEKFE 137 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 FL + G+ + I L A LI EL +L Sbjct: 138 NDTIFLNDQNIGK------TVEIPLSKLKKANLI--YELPNDTLEK 175 >gi|255019835|ref|ZP_05291911.1| transcription termination protein NusA-like protein [Acidithiobacillus caldus ATCC 51756] gi|254970764|gb|EET28250.1| transcription termination protein NusA-like protein [Acidithiobacillus caldus ATCC 51756] Length = 176 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 50/155 (32%), Positives = 84/155 (54%), Gaps = 9/155 (5%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 GL + I M V + LL +++ LQ+F+E+D+G +T+ DC +S+ +S Sbjct: 27 GLEERLLEGIAEQAAAMGCGVVDVRLLRVGRSVTLQVFIEKDEGAVTIEDCAAVSRQLSV 86 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LDVEN I G YRLEVSSPG+DRP+ R++DF R+ G + E+ +++ G+++ Sbjct: 87 WLDVENPIAGAYRLEVSSPGLDRPLKREADFQRFVGALAEIELRGLRDGRRRWRGRLLLA 146 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 S L D++ ++ +L A+L+ Sbjct: 147 SPGSVAL--------DVDGVRQEFLLAEILKAKLV 173 >gi|121613126|ref|YP_999862.1| hypothetical protein CJJ81176_0173 [Campylobacter jejuni subsp. jejuni 81-176] gi|167004833|ref|ZP_02270591.1| hypothetical protein Cjejjejuni_00785 [Campylobacter jejuni subsp. jejuni 81-176] gi|166980215|sp|A1VXM1|RIMP_CAMJJ RecName: Full=Ribosome maturation factor rimP gi|87250144|gb|EAQ73102.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni 81-176] Length = 140 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 12/147 (8%) Query: 29 IQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 ++ + +E L+ E + +I+V+++ G + L DC LS+ +SPI DVE + Sbjct: 3 LEALCKEAELSFYDDELVSENGRKIYRIYVQKE-GGVNLDDCARLSEILSPIFDVEPPVN 61 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 G Y LEVSSPG++R + + F + G +V +K+K KI+ + LE Sbjct: 62 GEYFLEVSSPGLERKLSKIEHFAKSIGELVKITT----NEKEKFEAKIIAVDDENITLEN 117 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 + EK I+F+ + AR + Sbjct: 118 LENKEKT------TINFNDIKKARTFI 138 >gi|329919854|ref|ZP_08276792.1| hypothetical protein HMPREF9210_0185 [Lactobacillus iners SPIN 1401G] gi|328936944|gb|EGG33374.1| hypothetical protein HMPREF9210_0185 [Lactobacillus iners SPIN 1401G] Length = 158 Score = 134 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 71/156 (45%), Gaps = 7/156 (4%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPIL 80 + VI P++ V I ++E N L+I+V+R+ + + + LS+++S L Sbjct: 5 IDKVIEVITPLVHARGDELVDIEYVKENNQNYLRIYVDREPDGIDIDEIATLSESVSEQL 64 Query: 81 DVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 D+ + + Y LE+SSPG++RP+ ++D+ + V + ++ G ++ Sbjct: 65 DLINPDPLPDPYILELSSPGVERPIKTEADWCKAKNDYVHVGLYKKINGQKSYEGTLLDY 124 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 LE + + +I I + + + R + Sbjct: 125 DMDKIILEI----KIKTQQQKITIPRNMIANIRFAI 156 >gi|297588446|ref|ZP_06947089.1| conserved hypothetical protein [Finegoldia magna ATCC 53516] gi|297573819|gb|EFH92540.1| conserved hypothetical protein [Finegoldia magna ATCC 53516] Length = 154 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 9/149 (6%) Query: 29 IQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 + P+IE+ + + +L ++E+D+G +++ DCE ++ I+ LD + I Sbjct: 14 LSPLIEDTGIDFYDVEYSNQNGKNILTFYIEKDEGLISIDDCELINNRITDKLDEIDPIS 73 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LE++S I P R DF + G+VV + K++ G + ++ LE Sbjct: 74 DPYYLEIASVDITTPFTRDKDFKKNLGNVVIVNLYQKLDSKKEFKGILKDFNDQEISLEL 133 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIVTD 176 EK QI I ++ S +L + D Sbjct: 134 EKN--------QIKIERSNISSIKLSLFD 154 >gi|218782564|ref|YP_002433882.1| hypothetical protein Dalk_4736 [Desulfatibacillum alkenivorans AK-01] gi|218763948|gb|ACL06414.1| protein of unknown function DUF150 [Desulfatibacillum alkenivorans AK-01] Length = 182 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 10/165 (6%) Query: 9 SKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLR 67 SK R + + + +E V E +L+++V+++ G +TL Sbjct: 18 SKDRIRRVDADRILEQVRKLTGAALEAEGMDLVLAEFKREGGGYILRLYVDKE-GGITLG 76 Query: 68 DCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD 127 DC +S+ + +LD YRLEVSSPG+DRP+ R+ F R+ G Sbjct: 77 DCTMVSRYVGDLLDAYADEMPRYRLEVSSPGLDRPLTREDHFRRFEGRTALIVTKEPREG 136 Query: 128 KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++K G + G L +E+ + + + SARL Sbjct: 137 RKKFRGVLSGALNGVITL--------VADEVPMEFALHEIESARL 173 >gi|93004903|ref|YP_579340.1| hypothetical protein Pcryo_0072 [Psychrobacter cryohalolentis K5] gi|122416155|sp|Q1QEP7|RIMP_PSYCK RecName: Full=Ribosome maturation factor rimP gi|92392581|gb|ABE73856.1| protein of unknown function DUF150 [Psychrobacter cryohalolentis K5] Length = 166 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 71/167 (42%), Gaps = 18/167 (10%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVER------DDGNMTLRDCEELSQ 74 +++++I P + I + N LL+I++E + +T+ +C ++ Sbjct: 7 VTELTNIIAPAVAACDVALWGIEFAPQGNRSLLRIYIEALPEEQAQNKQVTIENCAAVNH 66 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD----KQK 130 +S IL+V + I G + LEVSSPG DR + G V+ ++ + G+ ++K Sbjct: 67 QVSGILEVHDPISGEFILEVSSPGFDRAFFSDEQMHAYVGQTVSLRLIQAIGEGDKKRRK 126 Query: 131 LIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 G + T L + Q I+ ++ A LI D Sbjct: 127 ATGTLNSIDATSLKL-------TATDGEQFEIALSNIDKANLIYEDA 166 >gi|86151421|ref|ZP_01069636.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni 260.94] gi|85841768|gb|EAQ59015.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni 260.94] Length = 140 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 12/147 (8%) Query: 29 IQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 ++ + +E L+ E + +I+V+++ G + L DC LS+ +SPI DVE + Sbjct: 3 LEALCKEAELSFYDDELVSENGRKIYRIYVQKE-GGVNLDDCARLSEILSPIFDVEPPVN 61 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 G Y LEVSSPG++R + + F + G +V +K+K KI+ + LE Sbjct: 62 GEYFLEVSSPGLERKLSKIEHFAKSIGELVKITT----NEKEKFEAKIIAVDDENITLEN 117 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 + EK I+F+ + A+ V Sbjct: 118 LENKEKT------TINFNDIKKAKTFV 138 >gi|312873335|ref|ZP_07733388.1| conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d] gi|311091125|gb|EFQ49516.1| conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d] Length = 158 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 71/156 (45%), Gaps = 7/156 (4%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPIL 80 + VI P++ V I ++E N L+I+V+R+ + + + LS+++S L Sbjct: 5 IDKVIEVITPLVHARGDELVDIEYVKENNQNYLRIYVDREPNGIDIDEIATLSESVSEQL 64 Query: 81 DVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 D+ + + Y LE+SSPG++RP+ ++D+ + V + ++ G ++ Sbjct: 65 DLINPDPLPDPYILELSSPGVERPIKTEADWCKAKDDYVHVGLYKKINGQKSYEGTLLDY 124 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 LE + + +I I + + + R + Sbjct: 125 DMDKIILEI----KIKTQQQKITIPRNMIANIRFAI 156 >gi|261367203|ref|ZP_05980086.1| hypothetical protein SUBVAR_05255 [Subdoligranulum variabile DSM 15176] gi|282570801|gb|EFB76336.1| hypothetical protein SUBVAR_05255 [Subdoligranulum variabile DSM 15176] Length = 163 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 3/125 (2%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISP 78 G A + ++++P +E M R + +E + L++ ++RD+ + CE +S+AI P Sbjct: 9 GAAKTVETLVRPTVEGMGLRLWDVRFEKEGPDWFLRVLIDRDE-PLDTDTCEAVSRAIDP 67 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG-DKQKLIGKIMG 137 ILD + I+ Y LEV SPG+ R + R + G A ++ ++ + G + G Sbjct: 68 ILDEADPIDQSYYLEVGSPGLGRRLTRPEHYEALRGQKCAAHLIRPDEAGRRDVAGILQG 127 Query: 138 TSETG 142 G Sbjct: 128 LDGEG 132 >gi|223038669|ref|ZP_03608962.1| conserved hypothetical protein [Campylobacter rectus RM3267] gi|222880071|gb|EEF15159.1| conserved hypothetical protein [Campylobacter rectus RM3267] Length = 142 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 11/147 (7%) Query: 29 IQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 ++ +I + + + + E + +I++ + G + L DCE++S+ +SPI DVE + Sbjct: 4 LENLISQCGVQLYDVEVANENGRAIYRIYIAKP-GGVNLDDCEKVSRLLSPIFDVEPPLS 62 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 G Y LEVSSPG++R + + S F+ G + G+ +KL GKI+ + LE Sbjct: 63 GDYVLEVSSPGLERKLEKPSHFISSVGELAKIS-AEVDGENKKLKGKILSADDDETSLES 121 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 E + K I ++ A+ + Sbjct: 122 EGQILK--------IKIANIKKAKTYI 140 >gi|224543311|ref|ZP_03683850.1| hypothetical protein CATMIT_02511 [Catenibacterium mitsuokai DSM 15897] gi|224523844|gb|EEF92949.1| hypothetical protein CATMIT_02511 [Catenibacterium mitsuokai DSM 15897] Length = 153 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 71/155 (45%), Gaps = 5/155 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I + P+I + ++EK L++F+E++DGN+ + C +S+A+S Sbjct: 1 MLEKIKEGLLPIIASFECHLDSMEYVKEKGEWYLRVFIEKNDGNLDMDTCVAVSEAVSEK 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD ++I+ Y LEVSSPGI++P+ G V ++ L G + Sbjct: 61 LDELDLIKDEYYLEVSSPGIEKPLKTFEQVEAHVGSYVHIDLKNPQNGIDSLEGTLASID 120 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ + + ++ I++D + RL V Sbjct: 121 GKELLIQYMVKAVRK----KMTINYDDIKFIRLAV 151 >gi|170017454|ref|YP_001728373.1| YlxS [Leuconostoc citreum KM20] gi|259585783|sp|B1MZH7|RIMP_LEUCK RecName: Full=Ribosome maturation factor rimP gi|169804311|gb|ACA82929.1| YlxS [Leuconostoc citreum KM20] Length = 158 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 76/158 (48%), Gaps = 14/158 (8%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGN-MTLRDCEELSQAISP 78 +A +IS++I+P+I +S +E +L+I +++ + +T+ D +QA++ Sbjct: 5 VAQEISTLIEPLINAQQLLLWDVSYTKEGGQKVLRILIDKRNHEFITMDDITTFTQAVNE 64 Query: 79 ILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFL--RWNGHVVACEIVLSSGDKQKLIGK 134 +LD + I Y L++SSPG DRP++R + + +G + ++ ++K GK Sbjct: 65 LLDTIEPDPIPEAYMLDISSPGADRPLIRPWHYEWAKASGENILVAFFVAKNGQKKWQGK 124 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 I + G L + I +FD + A L Sbjct: 125 IETIDDKGITL--------TTSSETIVCTFDEIAKAVL 154 >gi|297537314|ref|YP_003673083.1| hypothetical protein M301_0118 [Methylotenera sp. 301] gi|297256661|gb|ADI28506.1| protein of unknown function DUF150 [Methylotenera sp. 301] Length = 161 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 81/166 (48%), Gaps = 26/166 (15%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDD-----GNMTLRDCEELSQAIS 77 D+ ++I+ + ++ + V + + + LL++F+++ + ++ + DC +S + Sbjct: 2 QDLHTLIEKSVSQLGYELVDLE-ISNRGKLLRVFIDKLNPADIKDSVNIDDCSLVSNQLG 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD---------- 127 +L VEN I + RLEVSSPG+DR + +++DF+R+ G ++ + D Sbjct: 61 NLLAVENDI-DYDRLEVSSPGMDRVLKKEADFVRFIGERAQIKLRVGIKDESVTATETTL 119 Query: 128 -KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ +G I G + +E + K ++ ++ ARL Sbjct: 120 PRKTFLGFIKGVQDGLVLIEFDGVVYK--------MALSNIDKARL 157 >gi|256544695|ref|ZP_05472067.1| hypothetical protein HMPREF0078_0324 [Anaerococcus vaginalis ATCC 51170] gi|256399584|gb|EEU13189.1| hypothetical protein HMPREF0078_0324 [Anaerococcus vaginalis ATCC 51170] Length = 152 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 44/147 (29%), Positives = 72/147 (48%), Gaps = 8/147 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M L + ++ I + + V I + E KN +L+ F+ + DG +T+ DCE+ S +S Sbjct: 7 MDLISKLKENLESDINGLGYELVDIEFVNEGKNKILRFFIYK-DGGITIDDCEKTSNFLS 65 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD ++I+ Y LEVSSP + RP+ D R ++ ++ + +K IGKI Sbjct: 66 ERLDEIDLIKSFYYLEVSSPDLSRPLKTDRDLERNKDELLEIKLK----NGEKFIGKIKE 121 Query: 138 TSETG--FFLEKEKRGEKDMNELQIAI 162 E F LE E++ + I I Sbjct: 122 IKENSLIFTLENEQKEIEKSEIKTIKI 148 >gi|251783185|ref|YP_002997490.1| hypothetical protein SDEG_1793 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391817|dbj|BAH82276.1| hypothetical protein SDEG_1793 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 149 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 66/153 (43%), Gaps = 9/153 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ + P I+ + V + + + +L I V+++ G +T+ D +L+ ISP+LD Sbjct: 1 MTKTVAPEIKA-PYELVDVEYDKMGSDYVLSILVDKE-GGITVEDTSDLTDIISPLLDTI 58 Query: 84 --NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + Y LEVSSPG++RP+ G V + + + G ++ Sbjct: 59 TPDPFPDQYMLEVSSPGLERPLKTVESLKAAVGSYVNVSLYKAIDKVKVFQGDLLAFDGE 118 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ + + I + ++ ARL V Sbjct: 119 TLTIDYLDKTRHK----TVDIPYQTVAKARLAV 147 >gi|239617902|ref|YP_002941224.1| protein of unknown function DUF150 [Kosmotoga olearia TBF 19.5.1] gi|239506733|gb|ACR80220.1| protein of unknown function DUF150 [Kosmotoga olearia TBF 19.5.1] Length = 167 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 73/159 (45%), Gaps = 7/159 (4%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQA 75 G L + + + V EE+ + +++ + + +L + ++++DG +++ DCE S+A Sbjct: 13 GMYELTEKLRKLAEEVAEELGYEIYKLTFGKGRRRAVLTVAIDKEDGYISISDCENFSRA 72 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD II Y L + SPG +R + + DF+R+ G V + ++ L+G++ Sbjct: 73 FEKKLDETEIISSSYNLVIESPGAERELRKPGDFMRFTGKSVKIVLKEPLENRSVLVGQL 132 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + +E + + + + + A L + Sbjct: 133 INANEDLVTIIEADSNR------TFEVEYRMIKKANLRL 165 >gi|224419195|ref|ZP_03657201.1| hypothetical protein HcanM9_07971 [Helicobacter canadensis MIT 98-5491] gi|253828125|ref|ZP_04871010.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313142699|ref|ZP_07804892.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|253511531|gb|EES90190.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313131730|gb|EFR49347.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] Length = 143 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 47/153 (30%), Positives = 77/153 (50%), Gaps = 17/153 (11%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 M ++ D+ + IQ ++E + I L+E N +L+IFV + +++L DC+E+S A+S Sbjct: 1 MLISQDLQTKIQKLVESFDCKLYDIVTLKENDNQILRIFVTKKS-SVSLDDCQEISLALS 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 P+LDVE Y LEVSSPGI+R + K + G ++ + K++ GK++ Sbjct: 60 PLLDVEIPESKSYFLEVSSPGIERTLKTKEHYCDAIGELLKVKTFA----KEEFKGKLLA 115 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 + LE I I DS+ A Sbjct: 116 VNSDNLELEN-----------NIIIPLDSIKKA 137 >gi|325142813|gb|EGC65184.1| hypothetical protein NMB9615945_0622 [Neisseria meningitidis 961-5945] Length = 109 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 10/112 (8%) Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 +G +T+ DC +S +S + VE+I + LE+SSPG+DRP+ + +DF+R+ G + Sbjct: 2 EGGITVEDCATVSNHLSRVFMVEDI--DYKNLEISSPGLDRPLKKAADFVRFAGQNAKIK 59 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 L ++ IGKI G + + + + I ++ ARL Sbjct: 60 TRLPIDGQKNFIGKIEGCENDTVTISFDGK--------TVQIELGNIDKARL 103 >gi|259585828|sp|B8FCY3|RIMP_DESAA RecName: Full=Ribosome maturation factor rimP Length = 152 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 38/151 (25%), Positives = 65/151 (43%), Gaps = 10/151 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + + +E V E +L+++V+++ G +TL DC +S+ + +LD Sbjct: 2 EQVRKLTGAALEAEGMDLVLAEFKREGGGYILRLYVDKE-GGITLGDCTMVSRYVGDLLD 60 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 YRLEVSSPG+DRP+ R+ F R+ G ++K G + G Sbjct: 61 AYADEMPRYRLEVSSPGLDRPLTREDHFRRFEGRTALIVTKEPREGRKKFRGVLSGALNG 120 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 L +E+ + + + SARL Sbjct: 121 VITL--------VADEVPMEFALHEIESARL 143 >gi|257439269|ref|ZP_05615024.1| protein associated with NUS operon [Faecalibacterium prausnitzii A2-165] gi|257198311|gb|EEU96595.1| protein associated with NUS operon [Faecalibacterium prausnitzii A2-165] Length = 163 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 71/161 (44%), Gaps = 11/161 (6%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRD-CEELSQAISPI 79 A + ++++P +E M R + +E + L++ +++ DG D C ++S A+ PI Sbjct: 10 AQRVEALVRPTVEGMGLRLWDVVFEKEGPDWYLRVLIDKTDGTTMDTDTCADVSHALDPI 69 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK-QKLIGKIMGT 138 LD + IE Y LEV SPG+ R + R + G V+ + ++ + ++ G + Sbjct: 70 LDEADPIEQSYYLEVGSPGLGRKLTRPEHYEAVQGQKVSVRLYRANENGVKEFSGLLTSR 129 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELL 179 LE + ++ + RL ++L Sbjct: 130 EGNTITLE--------GPAGPMQFELSAVSTVRLCDDEDLF 162 >gi|299067339|emb|CBJ38536.1| conserved protein of unknown function [Ralstonia solanacearum CMR15] Length = 149 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 69/142 (48%), Gaps = 12/142 (8%) Query: 36 MSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVS 95 M + V++ + LL++++++ + + + DCE++S ++ + +VEN+ + RLEVS Sbjct: 1 MGYELVEVE--RAPDGLLRVYIDQAETGIVIEDCEKVSHQLTRVFEVENV--NYERLEVS 56 Query: 96 SPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE----TGFFLEKEKRG 151 SPG+DRP+ DF R+ G V + L ++ G + + LE E + Sbjct: 57 SPGLDRPLRTLVDFTRFAGLEVKVTLRLPVNGQKNFTGIVQAPAGEPGQERIGLEFEGKD 116 Query: 152 EKDMNELQIAISFDSLLSARLI 173 + + L ARL+ Sbjct: 117 ----GPALLEFTLSELDRARLV 134 >gi|300813715|ref|ZP_07094035.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512172|gb|EFK39352.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 153 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 10/152 (6%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 I + Q EE+ + V I + K+ LL IF+ + +G + L DC ++S I LD Sbjct: 9 QIFKIAQVSAEELGYEIVDIEYQKGNKHDLLSIFIFKKEG-IDLDDCTKMSHNIEKNLDN 67 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 I+ Y LE+SSPG+DRP+ K D+ R + V ++ K++ +G + +E Sbjct: 68 LEILTRPYYLEISSPGLDRPIKTKDDYRRNLENEVEVKLYGPYNGKKEYVGILKDYNEHN 127 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E I I ++ S + ++ Sbjct: 128 VIICVEND--------NIEIPIKNISSMKQVI 151 >gi|260654722|ref|ZP_05860210.1| hypothetical protein GCWU000246_00656 [Jonquetella anthropi E3_33 E1] gi|260630437|gb|EEX48631.1| hypothetical protein GCWU000246_00656 [Jonquetella anthropi E3_33 E1] Length = 173 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 77/155 (49%), Gaps = 8/155 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 L G+++++++PV+ E+ +R + L E ++ +++F++ +G +T DCE +S+AI P Sbjct: 6 PALRGELTALLKPVVVELGYRWEGLQLEEIGSMTVRVFIDGPNG-VTADDCEVVSKAIDP 64 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +L+ Y LEVSSPG++R + D+ R+ G ++L G + Sbjct: 65 LLEGAMADSNRYYLEVSSPGLERFLFELDDYRRFIGETARIRFHGEGSHIKRLTGVVEAV 124 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 E E R E AI F+ ++ L+ Sbjct: 125 DE-------EGRVTIHTEEETAAIPFEDIVEGSLV 152 >gi|282882028|ref|ZP_06290669.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] gi|281298058|gb|EFA90513.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] Length = 153 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 10/152 (6%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 I + Q EE+ + V I + K+ LL IF+ + +G + L DC +S I LD Sbjct: 9 QIFKIAQVSAEELGYEIVDIEYQKGNKHDLLSIFIFKKEG-IDLDDCTMMSHNIEKNLDN 67 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 I+ Y LE+SSPG+DRP+ K D+ R + V ++ K++ +G + +E Sbjct: 68 LEILSRPYYLEISSPGLDRPIKTKDDYRRNLENEVEVKLYGPYNGKKEYVGILKDYNEHN 127 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E I I ++ S + ++ Sbjct: 128 VIICVEND--------NIEIPIKNISSMKQVI 151 >gi|319944111|ref|ZP_08018389.1| hypothetical protein HMPREF0551_1236 [Lautropia mirabilis ATCC 51599] gi|319742605|gb|EFV95014.1| hypothetical protein HMPREF0551_1236 [Lautropia mirabilis ATCC 51599] Length = 208 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 6/114 (5%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDD--GNMTLRDCEELSQAISPILDVENI 85 ++ PV+ M + V + + LL+I +E D +TL DCE +S+ +S + VE++ Sbjct: 1 MVDPVVSGMGYEVVDVEFVAGG--LLRITIENVDHAQPITLDDCERVSEQLSHLFLVEDV 58 Query: 86 IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 + RLE+SSPG+DR + R DF R+ G V + + ++ G ++ Sbjct: 59 --DYDRLEISSPGLDRRLRRPQDFARFTGDEVKLWLRMPQDGRRTFEGVLLSAE 110 >gi|148926309|ref|ZP_01809993.1| hypothetical protein Cj8486_0133 [Campylobacter jejuni subsp. jejuni CG8486] gi|145844701|gb|EDK21806.1| hypothetical protein Cj8486_0133 [Campylobacter jejuni subsp. jejuni CG8486] Length = 140 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 73/147 (49%), Gaps = 12/147 (8%) Query: 29 IQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 ++ + +E L+ E + +I+V+++ G + L DC LS+ +SPI DVE + Sbjct: 3 LEALCKEAELSFYDDELVSENGRKIYRIYVQKE-GGVNLDDCARLSEILSPIFDVEPPVN 61 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 G Y LEVSSPG++R + + F + G +V +K+K+ KI+ + LE Sbjct: 62 GEYFLEVSSPGLERKLSKIEHFAKSIGELVKITT----NEKEKIEAKIIAVDDENITLEN 117 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 + EK I+F+ + AR + Sbjct: 118 LENKEKT------TINFNDIKKARTFI 138 >gi|56807386|ref|ZP_00365365.1| COG0779: Uncharacterized protein conserved in bacteria [Streptococcus pyogenes M49 591] Length = 162 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 68/162 (41%), Gaps = 9/162 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ + P I+ + V + + + +L I V+++ G +T+ D +L+ Sbjct: 5 IANTSIIDIVTKTVTPEIKA-PYELVDVEYDKMGSDYILSILVDKE-GGITVEDTSDLTN 62 Query: 75 AISPILDVENI--IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 ISP+LD + Y LEVSSPG++RP+ G + + + + Sbjct: 63 IISPLLDTIDPDPFPNQYMLEVSSPGLERPLKTADSLKAAVGSYINVSLYQAIDKVKVFQ 122 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G ++ ++ + + + I + ++ R+ V Sbjct: 123 GDLLAFDGETLTIDYLDKTRHKI----VNIPYQAVAKVRMAV 160 >gi|242309141|ref|ZP_04808296.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] gi|239524182|gb|EEQ64048.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] Length = 143 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 17/153 (11%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 M ++ ++ + IQ ++E + I+ L+E N +L+I + + +++L DC+E+S A+S Sbjct: 1 MLISQELQAKIQKLVESFGCKIYDITTLKENENQILRISITKKP-SVSLDDCQEVSLALS 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 P+LDVE Y LEVSSPGI+RP+ K F G ++ + + GK++ Sbjct: 60 PLLDVEIPNFEKYYLEVSSPGIERPLKTKEHFEDAIGELIKIKTISKQD----FKGKLIA 115 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 + LE + I + A Sbjct: 116 IDDESLKLESGEI-----------IPISEIKKA 137 >gi|42523052|ref|NP_968432.1| hypothetical protein Bd1545 [Bdellovibrio bacteriovorus HD100] gi|51316637|sp|Q6MMS8|RIMP_BDEBA RecName: Full=Ribosome maturation factor rimP gi|39575257|emb|CAE79425.1| conserved hypothetical protein [Bdellovibrio bacteriovorus HD100] Length = 174 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 69/165 (41%), Gaps = 22/165 (13%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDD-GNMTLRDCEELSQAISPIL 80 + + V I + K L++F++R++ G +++ DC +S+ +S IL Sbjct: 9 AKVEKIANDVAAAQGCVLYDIEFVGLGKGRTLRLFIDREEEGAISIEDCTNVSRGLSEIL 68 Query: 81 D--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG----------DK 128 D E I G Y LEVS+PG+DR + + F + G V + + + Sbjct: 69 DADEEMIPGGEYNLEVSTPGLDRHLKKPWHFKKAIGKKVYIKTTKALESVGVEDKKWKNA 128 Query: 129 QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + E G + +++I I + + A+L+ Sbjct: 129 KTVEEVLESADEQGV--------RFVVKDVEIKIPYAMIDRAKLV 165 >gi|255321999|ref|ZP_05363149.1| conserved hypothetical protein [Campylobacter showae RM3277] gi|255301103|gb|EET80370.1| conserved hypothetical protein [Campylobacter showae RM3277] Length = 142 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 72/147 (48%), Gaps = 11/147 (7%) Query: 29 IQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 ++ +I + + + + E + +I++ + G + L DCE++S+ +SPI DVE + Sbjct: 4 LENLISQCGVQLYDVEVANENGRAIYRIYIAKP-GGVNLDDCEKVSRILSPIFDVEPPLT 62 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 G Y LEVSSPG++R + + S F+ G + G+ +KL GKI+ + E Sbjct: 63 GDYVLEVSSPGLERKLEKPSHFILSIGELAKIS-AEVDGENKKLKGKILSADDEEISFES 121 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 E + K I ++ A+ + Sbjct: 122 EGQILK--------IKIANIKKAKTYI 140 >gi|322436507|ref|YP_004218719.1| protein of unknown function DUF150 [Acidobacterium sp. MP5ACTX9] gi|321164234|gb|ADW69939.1| protein of unknown function DUF150 [Acidobacterium sp. MP5ACTX9] Length = 207 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 73/200 (36%), Gaps = 48/200 (24%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVER--------------------- 59 I + + V V + L++F+E+ Sbjct: 5 IDTIRATAERVAASHHLEVVDVEFSGGAKFRSLRVFIEKDAESRAKLAAQLTAAQEASDS 64 Query: 60 ----------DDG-------NMTLRDCEELSQAISPILDVENIIEGH-YRLEVSSPGIDR 101 G +T DC + ++ +LDVE+ I G Y LEVSSPG++R Sbjct: 65 VEVGFELPVLPSGVPVESLSGVTHEDCADFARDFGTVLDVEDTIPGAEYTLEVSSPGLER 124 Query: 102 PMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFL--------EKEKRGEK 153 + + +DF R++G ++ + + + G++ G + + +K K + Sbjct: 125 KLAKPADFARFSGFLIKLQTFTAVDGNRHFQGRLTGFNPEAQTIALDPSAVKQKGKSKKS 184 Query: 154 DMNELQIAISFDSLLSARLI 173 + I+F ++ A LI Sbjct: 185 AAAPQPVEIAFQNVEKANLI 204 >gi|323466336|gb|ADX70023.1| Ribosome maturation factor rimP [Lactobacillus helveticus H10] Length = 172 Score = 131 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 69/162 (42%), Gaps = 11/162 (6%) Query: 20 GLAGDISSVIQPVIE----EMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQ 74 + + +PV+E E V + ++EK L+I+V+R + + + LS+ Sbjct: 13 NFLSKVVDLARPVVETIIDEHGDMLVDMEYVKEKGQNYLRIYVDRQPNGIDIDEIAALSE 72 Query: 75 AISPILDVENI--IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 +S LD + + Y LE+SSPG +RP+ ++D+ R V + DK+ Sbjct: 73 LVSEKLDTIDPDPLPDPYVLELSSPGAERPIKTEADWKRALNDYVHIGLYQKIDDKKVYE 132 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G + + LE + + + ++ I + R + Sbjct: 133 GTLKYYNNDEIVLEVKDKTRRK----KLTIPRKLIAKIRFAI 170 >gi|317490694|ref|ZP_07949160.1| hypothetical protein HMPREF1023_02860 [Eggerthella sp. 1_3_56FAA] gi|316910225|gb|EFV31868.1| hypothetical protein HMPREF1023_02860 [Eggerthella sp. 1_3_56FAA] Length = 159 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 58/152 (38%), Gaps = 11/152 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + P E+ V + + K +++ ++ DG ++ + I+ ++ Sbjct: 6 EQQLLDALAPRAEQEGVEIVTVEVAGAKKAPTIRVCIDTPDG-VSFDELSSAQAWINDLM 64 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D + G Y LEVSSPGIDRP+ F R+ G + + G I Sbjct: 65 DELDPFPGAYTLEVSSPGIDRPLRTAEHFARFVGDTAVLKT-QPVDGRGSWTGAIASVEG 123 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 L D++ + I D++ A L Sbjct: 124 DVVVL--------DVDGAEARIPMDTIKRAHL 147 >gi|319941975|ref|ZP_08016296.1| ribosome maturation factor rimP [Sutterella wadsworthensis 3_1_45B] gi|319804628|gb|EFW01498.1| ribosome maturation factor rimP [Sutterella wadsworthensis 3_1_45B] Length = 186 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 42/184 (22%), Positives = 86/184 (46%), Gaps = 32/184 (17%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD-DGNMTLRDCEELSQAIS 77 M +G +S++++ +E + + V + L+ L+++ ++ + DG ++L DCE +S ++ Sbjct: 1 MNSSGALSALVKKTVEGLGYELVDVERLQRG--LVRVTIDIERDGGISLEDCERVSDQLT 58 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG-------DKQK 130 + VE++ + RLEVSSPG++RP+ R D+ R+ G + E+ ++K Sbjct: 59 HLFTVEDV--SYERLEVSSPGVERPLKRARDWERFTGELAWVELFAPLKAEGFPEAGRRK 116 Query: 131 LIGKIMGTSETG--------------------FFLEKEKRGEKDMNELQIAISFDSLLSA 170 L G+I+G S L K+ + +++ + A Sbjct: 117 LEGRIVGISGESGAEQIEFDYFEVDIARTPRAAALRARKKQTVEAAPVRVVFPLSEVEQA 176 Query: 171 RLIV 174 L+V Sbjct: 177 HLLV 180 >gi|94986975|ref|YP_594908.1| transcription elongation factor [Lawsonia intracellularis PHE/MN1-00] gi|167013025|sp|Q1MQZ0|RIMP_LAWIP RecName: Full=Ribosome maturation factor rimP gi|94731224|emb|CAJ54587.1| transcription elongation factor [Lawsonia intracellularis PHE/MN1-00] Length = 196 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 68/171 (39%), Gaps = 17/171 (9%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVE--------------RDDGNMT 65 L I+ +I P+I + I L+ +++IFV+ +T Sbjct: 5 ALIETITQLISPLITAQGLKLWGIELINIPQPIIKIFVDTIETNRLHENNIINSKSEQIT 64 Query: 66 LRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS 125 + C LS+ I L+VE + + LEVSSPG++R + H + + Sbjct: 65 IEQCASLSRLIGLTLEVEELFPNKWTLEVSSPGLERSFFTIQQLSNYINHDIDVTLKEQH 124 Query: 126 ---GDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 +++K G ++ ++ F L K ++I++ + A L+ Sbjct: 125 PLWPNRKKFYGTLISITDNTFMLNLSLAHRKSDEPENVSINWQQVRKATLV 175 >gi|154174423|ref|YP_001408783.1| hypothetical protein CCV52592_0357 [Campylobacter curvus 525.92] gi|259585735|sp|A7GZZ1|RIMP_CAMC5 RecName: Full=Ribosome maturation factor rimP gi|112802245|gb|EAT99589.1| protein conserved hypothetical protein [Campylobacter curvus 525.92] Length = 138 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 15/147 (10%) Query: 29 IQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 + +++E + E + +I++ + +G ++L DCE++S+ +SPI DVE I Sbjct: 4 LNELVKECGVELYDTEIANENGRAIYRIYITK-NGGVSLDDCEKVSRLLSPIFDVEPPIS 62 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 G Y LEVSSPG++R + F G +V + + K G+++ + LE Sbjct: 63 GDYNLEVSSPGLERKLSEARHFKASLGELVKAQTAEA-----KFAGRLVKADDESIALEN 117 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 + E I + A+ + Sbjct: 118 D--------EGVFEIKIGDIKKAKTYL 136 >gi|187251075|ref|YP_001875557.1| hypothetical protein Emin_0665 [Elusimicrobium minutum Pei191] gi|259585767|sp|B2KC93|RIMP_ELUMP RecName: Full=Ribosome maturation factor rimP gi|186971235|gb|ACC98220.1| Uncharacterized protein conserved in bacteria [Elusimicrobium minutum Pei191] Length = 152 Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 10/155 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLL-QIFVERDDGNMTLRDCEELSQAIS 77 M I SV+ + + V + + + + L Q FV+++ G + L D E+ S+ I Sbjct: 1 MRDIKAIESVVADGLANQGYEVVDLIVQNQGSKKLFQFFVDKE-GGINLDDVEKASRLID 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 I+++EN+IEG Y LE SSPGI R + + F ++ G + ++ G I G Sbjct: 60 SIIEMENLIEGAYILEASSPGIKRVLKKPEHFKKFIGQRAKITLKQMIENRANFTGLIAG 119 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +ET L+ Q ++ + A L Sbjct: 120 ANETEMTLDD--------GTTQFKFKYEDIKKANL 146 >gi|251772258|gb|EES52828.1| conserved protein of unknown function [Leptospirillum ferrodiazotrophum] Length = 171 Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 76/148 (51%), Gaps = 5/148 (3%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + ++ I +++ M + L ++ +L++FV+ +G +T+ E +S+ +S +LD Sbjct: 10 SERLTEEITLLLDSMGLTLYDLVLPKKSGGVLRVFVDGPEG-VTIDQIESVSRRVSVLLD 68 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 V + G Y LEVSSPG+DR + D + G V+ ++V + ++ L G+I + Sbjct: 69 VLDPFPGRYHLEVSSPGLDRLLKIPEDLRKNEGKWVSLKLVDAIEGQKVLKGRIGSVGDA 128 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLS 169 GFFL + + + + + F L S Sbjct: 129 GFFLHVDAGKKSRI----LEVPFLQLRS 152 >gi|260101366|ref|ZP_05751603.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] gi|260084818|gb|EEW68938.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] Length = 172 Score = 130 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 70/162 (43%), Gaps = 11/162 (6%) Query: 20 GLAGDISSVIQPVIE----EMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQ 74 + +++PVIE E V + ++EK L+I+V+R + + + LS+ Sbjct: 13 NFLSKVVDLVRPVIETIIDEHGDMLVDMEYVKEKGQNYLRIYVDRQPNGIDIDEIAALSE 72 Query: 75 AISPILDVENI--IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 +S LD + + Y LE+SSPG +RP+ ++D+ R V + DK+ Sbjct: 73 LVSEKLDTIDPDPLPDPYVLELSSPGAERPITTEADWKRALNDYVHIGLYQKIDDKKVYE 132 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G + + LE + + + ++ I + R + Sbjct: 133 GTLKYYNNDEIVLEVKDKTRRK----KLTIPRKLIAKIRFAI 170 >gi|257126085|ref|YP_003164199.1| hypothetical protein Lebu_1320 [Leptotrichia buccalis C-1013-b] gi|257050024|gb|ACV39208.1| protein of unknown function DUF150 [Leptotrichia buccalis C-1013-b] Length = 163 Score = 130 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDG-NMTLRDCEELSQAISP 78 + + I+ ++EM + + + L+++VE++DG TL DC + S+ I Sbjct: 4 ILNEFEKRIELHLKEMKLELADLEYVRDGGYNYLRVYVEKEDGSTTTLDDCIDFSREIDG 63 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 + D ++I+ + LEVS+PG++R + + DFLR+ G + + + +K +GK+ Sbjct: 64 VAD--DLIDEKFFLEVSTPGVERRLKKPKDFLRFLGEKINVQAKSNIDGAKKFLGKLEKF 121 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 FL E G+ + I L A LI Sbjct: 122 ENDTIFLLDENLGKV------VEIPLLKLKKANLI 150 >gi|153952308|ref|YP_001397397.1| hypothetical protein JJD26997_0151 [Campylobacter jejuni subsp. doylei 269.97] gi|166979754|sp|A7H1L7|RIMP_CAMJD RecName: Full=Ribosome maturation factor rimP gi|152939754|gb|ABS44495.1| protein Tmden_0678 [Campylobacter jejuni subsp. doylei 269.97] Length = 140 Score = 130 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 12/144 (8%) Query: 29 IQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 ++ + +E L+ E + +I+V+++ G + L DC LS+ +SPI DVE + Sbjct: 3 LEALCKEAELSFYDDELVSENGKKIYRIYVQKE-GGVNLDDCARLSEILSPIFDVEPPVN 61 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 G Y LEVSSPG++R + + F + G +V +K+K+ KI+ + LE Sbjct: 62 GEYFLEVSSPGLERKLSKIEHFAKSIGELVKITT----NEKEKIEAKIIAVDDENITLEN 117 Query: 148 EKRGEKDMNELQIAISFDSLLSAR 171 + EK I+F+ + AR Sbjct: 118 LENKEKT------TINFNDIKKAR 135 >gi|308182570|ref|YP_003926697.1| Ribosome maturation factor rimP [Helicobacter pylori PeCan4] gi|308064755|gb|ADO06647.1| Ribosome maturation factor rimP [Helicobacter pylori PeCan4] Length = 146 Score = 130 bits (329), Expect = 7e-29, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKKIEEKIESVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEVISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + I+ Y LEVSS G++R + F G V ++ +K+ + + Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLT----NKESFQAVLKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E E K + + Sbjct: 117 DLSVDFELEDHAIKSVEYKDL 137 >gi|86149726|ref|ZP_01067956.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|205356511|ref|ZP_03223275.1| hypothetical protein Cj8421_0138 [Campylobacter jejuni subsp. jejuni CG8421] gi|85839994|gb|EAQ57253.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|205345698|gb|EDZ32337.1| hypothetical protein Cj8421_0138 [Campylobacter jejuni subsp. jejuni CG8421] Length = 140 Score = 130 bits (329), Expect = 7e-29, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 73/147 (49%), Gaps = 12/147 (8%) Query: 29 IQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 ++ + +E L+ E + +I+V+++ G + L DC +LS+ +SPI DVE + Sbjct: 3 LEALCKEAELSFYDDELVSENGKKIYRIYVQKE-GGVNLDDCAKLSEILSPIFDVEPPVN 61 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 G Y LEVSSPG++R + + F + G + +K+K+ KI+ + LE Sbjct: 62 GEYFLEVSSPGLERKLSKIEHFAKSIGELAKITT----NEKEKIEAKIIAVDDENITLEN 117 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 + EK I+F+ + AR + Sbjct: 118 LENKEKT------TINFNDIKKARTFI 138 >gi|158334114|ref|YP_001515286.1| hypothetical protein AM1_0930 [Acaryochloris marina MBIC11017] gi|259585654|sp|B0BZP6|RIMP_ACAM1 RecName: Full=Ribosome maturation factor rimP gi|158304355|gb|ABW25972.1| conserved hypothetical protein [Acaryochloris marina MBIC11017] Length = 150 Score = 130 bits (328), Expect = 9e-29, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 63/147 (42%), Gaps = 1/147 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + + PV + + V + +L++ + D + L DCE++S+A+ + Sbjct: 1 MIPKVIDLAAPVAAQFNLEVVGAVFQTNQSPPVLRVDIRNCDADTGLEDCEKMSRALEAV 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD +++ Y LE+SSPG+ + DF+ + G V + + IG + G Sbjct: 61 LDEDDVFPEAYVLEISSPGLSTLLTCDRDFVSFRGFPVLVQTHQPYRGHHQWIGNLTGRD 120 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDS 166 E L ++ R K E + + Sbjct: 121 EKFVQLNQKGRPIKIPREEILQVQLHD 147 >gi|227892602|ref|ZP_04010407.1| protein of hypothetical function DUF150 [Lactobacillus ultunensis DSM 16047] gi|227865587|gb|EEJ73008.1| protein of hypothetical function DUF150 [Lactobacillus ultunensis DSM 16047] Length = 172 Score = 130 bits (328), Expect = 9e-29, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 69/159 (43%), Gaps = 11/159 (6%) Query: 23 GDISSVIQPVIE----EMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAIS 77 + +++PV+E E V + + EK L+I+V+R+ + + + LS+ +S Sbjct: 16 SKVIDLVRPVVESIIDEHGDMLVDMEYVTEKGKKYLRIYVDREPDGIDIDEIAALSELVS 75 Query: 78 PILDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + Y LE+SSPG +RP+ +D+ R + + DK+ G + Sbjct: 76 EKLDSLNPDPFPEPYVLELSSPGAERPIKTAADWKRALNDYIHIGLYQKVEDKKVYEGTL 135 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ LE + + + + + + + R + Sbjct: 136 KSYNDDEIVLEIKDKTRRK----TLTVPRKLIANVRFAI 170 >gi|312872031|ref|ZP_07732109.1| conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] gi|311092444|gb|EFQ50810.1| conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] Length = 148 Score = 130 bits (328), Expect = 9e-29, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 69/147 (46%), Gaps = 7/147 (4%) Query: 31 PVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVE--NIIE 87 P++ V I ++E N L+I+V+R+ + + + LS+++S LD+ + + Sbjct: 4 PLVHARGDELVDIEYVKENNQNYLRIYVDREPNGIDIDEIATLSESVSEQLDLINPDPLP 63 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LE+SSPG++RP+ ++D+ + V + ++ G ++ LE Sbjct: 64 DPYILELSSPGVERPIKTEADWCKAKNDYVHVGLYKKINGQKSYEGTLLDYDMDKIILEI 123 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 + + +IAI + + + R + Sbjct: 124 ----KIKTQQKKIAIPRNMIANIRFAI 146 >gi|309775436|ref|ZP_07670439.1| 15 kDa protein [Erysipelotrichaceae bacterium 3_1_53] gi|308916825|gb|EFP62562.1| 15 kDa protein [Erysipelotrichaceae bacterium 3_1_53] Length = 183 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 64/157 (40%), Gaps = 5/157 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 M + +I P++ E ++ E +LQ+ + DG+M + C S+ IS Sbjct: 29 MDQIEKLKKLITPLVAEDGIVLYDVAWHTEGKMRILQVSIMHKDGSMDIDTCAAQSEKIS 88 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LD ++I Y LEV SPG +R + + G V ++ ++ G + Sbjct: 89 AMLDELDLISSEYFLEVCSPGAERELKSEDQIKDAIGEFVYVKLKNPKAGMDEIKGTLTA 148 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +L+ + K E I D++ RL V Sbjct: 149 FENHTVYLDYMAKAVKKKAE----IEMDNIALIRLSV 181 >gi|57505608|ref|ZP_00371535.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195] gi|57016155|gb|EAL52942.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195] Length = 138 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 14/147 (9%) Query: 29 IQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 ++ + EE L+ E + +I++ ++ G ++L DC LS+ +SPI DVE + Sbjct: 3 LKALCEEAGVELYDSELVSENGKKIYRIYIMKE-GGVSLEDCARLSEILSPIFDVEPPVN 61 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 G Y LEVSS G++R + F + G ++ +K+K+ GK++ FL+ Sbjct: 62 GEYFLEVSSAGLERKLSTLEHFEKSVGEMLKITTS----EKEKIQGKLLKVEGENIFLQD 117 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 EK +I I F + A+ + Sbjct: 118 EK--------AEICIEFSQVKKAKTFI 136 >gi|109947687|ref|YP_664915.1| hypothetical protein Hac_1157 [Helicobacter acinonychis str. Sheeba] gi|122973267|sp|Q17WR0|RIMP_HELAH RecName: Full=Ribosome maturation factor rimP gi|109714908|emb|CAJ99916.1| conserved hypothetical protein [Helicobacter acinonychis str. Sheeba] Length = 146 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 72/141 (51%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E +L++ ++ +G ++L +C+++S+ ISP+ Sbjct: 1 MTKRIEERIEGVIESLGYLLYDVSLIKESEQHILRVSLKNPNGAVSLDNCQQVSEIISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + ++ Y LEVSS G++R + F G VA +++ +KQ + + Sbjct: 61 LDVCDFLKDAYILEVSSMGLERTLKTPKHFKLSLGEKVAVKLM----NKQSFQAILKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E E K + + Sbjct: 117 DLSVDFELENHTIKSVEYKDL 137 >gi|312871843|ref|ZP_07731928.1| conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] gi|311092624|gb|EFQ50983.1| conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] Length = 146 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 69/148 (46%), Gaps = 7/148 (4%) Query: 30 QPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVE--NII 86 P++ V I ++E N L+I+V+R+ + + + LS+++S LD+ + + Sbjct: 1 TPLVHARGDELVDIEYVKENNQNYLRIYVDREPNGIDIDEIATLSESVSEQLDLINPDPL 60 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE 146 Y LE+SSPG++RP+ ++D+ + V + ++ G ++ LE Sbjct: 61 PDPYILELSSPGVERPIKTEADWCKAKNDYVHVGLYKKINGQKSYEGTLLDYDMDKIILE 120 Query: 147 KEKRGEKDMNELQIAISFDSLLSARLIV 174 + + +IAI + + + R + Sbjct: 121 I----KIKTQQKKIAIPRNMIANIRFAI 144 >gi|269120927|ref|YP_003309104.1| hypothetical protein Sterm_2319 [Sebaldella termitidis ATCC 33386] gi|268614805|gb|ACZ09173.1| protein of unknown function DUF150 [Sebaldella termitidis ATCC 33386] Length = 157 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 11/151 (7%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDV 82 +I I ++EM+ + + E L+I++ER DG ++ DC S+ I P++ Sbjct: 7 EIEKTIASYLDEMNLELADLEYVPEGGYNYLRIYIERVDGVTSIEDCVSFSEKIDPLI-- 64 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ I+ + LEVS+PGI+R + ++ DFLR+ G + + DK+ L G ++ Sbjct: 65 EDFIKDKFFLEVSTPGIERRLRKEKDFLRFKGKKIRLALKSKVNDKKVLTGDLVDFISNE 124 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 ++ E I I + + A LI Sbjct: 125 VVVDVEG--------TLINIPLEKVKKANLI 147 >gi|50914807|ref|YP_060779.1| hypothetical protein M6_Spy1461 [Streptococcus pyogenes MGAS10394] gi|71904118|ref|YP_280921.1| hypothetical protein M28_Spy1456 [Streptococcus pyogenes MGAS6180] gi|71911226|ref|YP_282776.1| hypothetical protein M5005_Spy_1413 [Streptococcus pyogenes MGAS5005] gi|94989045|ref|YP_597146.1| hypothetical protein MGAS9429_Spy1415 [Streptococcus pyogenes MGAS9429] gi|94991043|ref|YP_599143.1| hypothetical protein MGAS10270_Spy1534 [Streptococcus pyogenes MGAS10270] gi|94992936|ref|YP_601035.1| hypothetical protein MGAS2096_Spy1439 [Streptococcus pyogenes MGAS2096] gi|209559842|ref|YP_002286314.1| hypothetical protein Spy49_1341c [Streptococcus pyogenes NZ131] gi|34223094|sp|P59819|RIMP_STRP1 RecName: Full=Ribosome maturation factor rimP gi|73921027|sp|Q5XAG7|RIMP_STRP6 RecName: Full=Ribosome maturation factor rimP gi|91208006|sp|Q48RU4|RIMP_STRPM RecName: Full=Ribosome maturation factor rimP gi|166979769|sp|Q1JFG0|RIMP_STRPD RecName: Full=Ribosome maturation factor rimP gi|166979847|sp|Q1JAB7|RIMP_STRPB RecName: Full=Ribosome maturation factor rimP gi|166979918|sp|Q1JKG7|RIMP_STRPC RecName: Full=Ribosome maturation factor rimP gi|226695935|sp|B5XHV7|RIMP_STRPZ RecName: Full=Ribosome maturation factor rimP gi|50903881|gb|AAT87596.1| Hypothetical cytosolic protein [Streptococcus pyogenes MGAS10394] gi|71803213|gb|AAX72566.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS6180] gi|71854008|gb|AAZ52031.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS5005] gi|94542553|gb|ABF32602.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS9429] gi|94544551|gb|ABF34599.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS10270] gi|94546444|gb|ABF36491.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS2096] gi|209541043|gb|ACI61619.1| transcription termination protein NusA-like protein [Streptococcus pyogenes NZ131] Length = 178 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 68/162 (41%), Gaps = 9/162 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ + P I+ + V + + + +L I V+++ G +T+ D +L+ Sbjct: 21 IANTSIIDIVTKTVTPEIKA-PYELVDVEYDKMGSDYILSILVDKE-GGITVEDTSDLTN 78 Query: 75 AISPILDVENI--IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 ISP+LD + Y LEVSSPG++RP+ G + + + + Sbjct: 79 IISPLLDTIDPDPFPNQYMLEVSSPGLERPLKTADSLKAAVGSYINVSLYQAIDKVKVFQ 138 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G ++ ++ + + + I + ++ R+ V Sbjct: 139 GDLLAFDGETLTIDYLDKTRHKI----VNIPYQAVAKVRMAV 176 >gi|315639113|ref|ZP_07894280.1| conserved hypothetical protein [Campylobacter upsaliensis JV21] gi|315480817|gb|EFU71454.1| conserved hypothetical protein [Campylobacter upsaliensis JV21] Length = 139 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 14/147 (9%) Query: 29 IQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 ++ + +E L+ E + +I++ ++ G ++L DC LS+ +SPI DVE + Sbjct: 4 LKALCKEAGVELYDSELVSENGKKIYRIYIMKE-GGVSLEDCARLSEILSPIFDVEPPVS 62 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 G Y LEVSS G++R + F + G ++ +K+K+ GK++ FL+ Sbjct: 63 GEYFLEVSSAGLERKLSTLEHFEKSVGEMLKITTS----EKEKIQGKLLKVEGENIFLQD 118 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 EK +I I F + A+ + Sbjct: 119 EK--------AEICIEFSQVKKAKTFI 137 >gi|291287255|ref|YP_003504071.1| hypothetical protein Dacet_1343 [Denitrovibrio acetiphilus DSM 12809] gi|290884415|gb|ADD68115.1| protein of unknown function DUF150 [Denitrovibrio acetiphilus DSM 12809] Length = 169 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 11/147 (7%) Query: 32 VIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDVENII--EG 88 V+ E ++L E+ +L+I ++++ G + DC E S+AIS LD E+ I Sbjct: 28 VLSEKGLELFDMTLRSERGGKVLRITIDKETGP-GIEDCTEASRAISAFLDGEDNIVPLD 86 Query: 89 HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG-DKQKLIGKIMGTSETGFFLEK 147 Y LEVS+PG++RP+ + DF+R G V ++ GKI ++ L Sbjct: 87 KYHLEVSTPGLERPLRSQQDFVRQTGKKCKIITVNKDESGRKSYTGKIDSVDDSKVTLYV 146 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 EK IS D++ A L+V Sbjct: 147 EKES------AAFEISLDNISKANLVV 167 >gi|325912470|ref|ZP_08174863.1| hypothetical protein HMPREF0522_0261 [Lactobacillus iners UPII 143-D] gi|325475717|gb|EGC78890.1| hypothetical protein HMPREF0522_0261 [Lactobacillus iners UPII 143-D] Length = 145 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 69/147 (46%), Gaps = 7/147 (4%) Query: 31 PVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVE--NIIE 87 P++ V I ++E N L+I+V+R+ + + + LS+++S LD+ + + Sbjct: 1 PLVHARGDELVDIEYVKENNQNYLRIYVDREPNGIDIDEIATLSESVSEQLDLINPDPLP 60 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LE+SSPG++RP+ ++D+ + V + ++ G ++ LE Sbjct: 61 DPYILELSSPGVERPIKTEADWCKAKNDYVHVGLYKKINGQKSYEGTLLDYDMDKIILEI 120 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 + + +IAI + + + R + Sbjct: 121 ----KIKTQQQKIAIPRNMIANIRFAI 143 >gi|210134596|ref|YP_002301035.1| hypothetical protein HPP12_0398 [Helicobacter pylori P12] gi|226706095|sp|B6JKX7|RIMP_HELP2 RecName: Full=Ribosome maturation factor rimP gi|210132564|gb|ACJ07555.1| hypothetical protein HPP12_0398 [Helicobacter pylori P12] Length = 146 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 70/141 (49%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E + +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKRIEEKIEGVIESLGYLLYDVSLVKENEHNILRVSLKNPNGAVSLDICQQVSEIISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + I+ Y LEVSS G++R + F G V ++ +K+ + + Sbjct: 61 LDVCDFIQDAYILEVSSMGLERVLKTPKHFKLSLGEKVEVKLT----NKESFQAVLKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E E K + + Sbjct: 117 DWSADFELENHAIKSVEYKDL 137 >gi|21911035|ref|NP_665303.1| hypothetical protein SpyM3_1499 [Streptococcus pyogenes MGAS315] gi|34223120|sp|Q8K642|RIMP_STRP3 RecName: Full=Ribosome maturation factor rimP gi|21905244|gb|AAM80106.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315] Length = 178 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 69/162 (42%), Gaps = 9/162 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ + P I+ + V + + + +L I V+++DG +T+ D +L+ Sbjct: 21 IANTSIIDIVTKTVTPEIKA-PYELVDVEYDKMGSDYILSILVDKEDG-ITVEDTSDLTN 78 Query: 75 AISPILDVENI--IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 ISP+LD + Y LEVSSPG++RP+ G + + + + Sbjct: 79 IISPLLDTIDPDPFPNQYMLEVSSPGLERPLKTADSLKAAVGSYINVSLYQAIDKVKVFQ 138 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G ++ ++ + + + I + ++ R+ V Sbjct: 139 GDLLAFDGETLTIDYLDKTRHKI----VNIPYQAVAKVRMAV 176 >gi|157164808|ref|YP_001466379.1| hypothetical protein CCC13826_1497 [Campylobacter concisus 13826] gi|259585734|sp|A7ZC71|RIMP_CAMC1 RecName: Full=Ribosome maturation factor rimP gi|112801640|gb|EAT98984.1| protein Tmden_0678 [Campylobacter concisus 13826] Length = 138 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 15/147 (10%) Query: 29 IQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 + +I E + E + ++++ + DG ++L DCE++S+ +SPI DV + Sbjct: 4 LDKLIRECGVELYDSEIANENGRAIFRVYITK-DGGVSLDDCEKVSRLLSPIFDVTPPVS 62 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 G Y LEVSSPG++R + + S F G +V + + +K G+++ E +E Sbjct: 63 GDYNLEVSSPGLERKLSKPSHFKASVGELVKVQT-----EAEKFAGRLVKADEESIAVEN 117 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 E E I+ + A+ + Sbjct: 118 E--------EGIFEINISEIKKAKTYL 136 >gi|217031630|ref|ZP_03437135.1| hypothetical protein HPB128_21g188 [Helicobacter pylori B128] gi|298736659|ref|YP_003729185.1| hypothetical protein HPB8_1164 [Helicobacter pylori B8] gi|216946830|gb|EEC25426.1| hypothetical protein HPB128_21g188 [Helicobacter pylori B128] gi|298355849|emb|CBI66721.1| conserved hypothetical protein [Helicobacter pylori B8] Length = 146 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 71/141 (50%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKRIEEKIEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEVISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + I+ Y LEVSS G++R + F G V +++ +K+ + + Sbjct: 61 LDVCDFIQDAYTLEVSSMGLERTLKTPKHFKLSLGEKVEVKLI----NKESFQAVLKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E E K++ + Sbjct: 117 DLSADFELEDHAIKNVEYKDL 137 >gi|309808386|ref|ZP_07702287.1| conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] gi|308168371|gb|EFO70488.1| conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] Length = 145 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 69/147 (46%), Gaps = 7/147 (4%) Query: 31 PVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVE--NIIE 87 P++ V I ++E N L+I+V+R+ + + + LS+++S LD+ + + Sbjct: 1 PLVHARGDELVDIEYVKENNQNYLRIYVDREPNGIDIDEIATLSESVSEQLDLINPDPLP 60 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LE+SSPG++RP+ ++D+ + V + ++ G ++ LE Sbjct: 61 DPYILELSSPGVERPIKTEADWCKAKNDYVHVGLYKKINGQKSYEGTLLDYDMDKIILEI 120 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 + + +IAI + + + R + Sbjct: 121 ----KIKTQQKKIAIPRNMIANIRFAI 143 >gi|227878820|ref|ZP_03996727.1| protein of hypothetical function DUF150 [Lactobacillus crispatus JV-V01] gi|227861568|gb|EEJ69180.1| protein of hypothetical function DUF150 [Lactobacillus crispatus JV-V01] Length = 172 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 71/157 (45%), Gaps = 7/157 (4%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 + + V++ +I+E V + ++EK L+I+V+R + + + LS+ +S Sbjct: 18 VIDSVRPVVETIIDEHGDMLVDMEYVKEKGQNYLRIYVDRQPNGIDIDEIAALSELVSEK 77 Query: 80 LDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + + Y LE+SSPG +RP+ K+D+ + + + +K+ G + Sbjct: 78 LDALDPDPLPDPYVLELSSPGAERPIKTKADWEKALNDYIHVGLYQKIENKKMYEGTLKS 137 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ LE + + + + + + + R + Sbjct: 138 YNDDEVVLEIKDKTRRK----TLTVPRKLIANIRFAI 170 >gi|306826864|ref|ZP_07460164.1| protein of hypothetical function DUF150 [Streptococcus pyogenes ATCC 10782] gi|34223095|sp|P59820|RIMP_STRP8 RecName: Full=Ribosome maturation factor rimP gi|304430882|gb|EFM33891.1| protein of hypothetical function DUF150 [Streptococcus pyogenes ATCC 10782] Length = 178 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 68/162 (41%), Gaps = 9/162 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ + P I+ + V + + + +L I V+++ G +T+ D +L+ Sbjct: 21 IANTSIIDIVTKTVTPEIKA-PYELVDVEYDKMGSDYILSILVDKE-GGITVEDTSDLTN 78 Query: 75 AISPILDVENI--IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 ISP+LD + Y LEVSSPG++RP+ G + + + + Sbjct: 79 IISPLLDTIDPDPFPNQYMLEVSSPGLERPLKTADSLKAAVGSYINVSLYQAIDKVKVFQ 138 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G ++ ++ + + + I + ++ R+ V Sbjct: 139 GDLLAFDGETLTIDYLDKTRHKI----VNIPYQAVAKVRMAV 176 >gi|291166363|gb|EFE28409.1| hypothetical protein HMPREF0389_00324 [Filifactor alocis ATCC 35896] Length = 152 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 84/150 (56%), Gaps = 8/150 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 +A I + V++E + V + ++E L++FV++ DG + + + ++++ ++ + Sbjct: 5 IAVQIEELFLSVLDEK-YELVDVEYVKEGAFYYLRVFVDK-DGGLDIDEISDITRVLNKL 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD ++ I+ Y LEVS+PG+ R + ++ DF+R +G + ++ +++L G ++G Sbjct: 63 LDEKDPIQQQYFLEVSTPGLGRALKKERDFIRESGKEIELKLYQPVNGQKELSGVLIGLD 122 Query: 140 ETG-FFLEKEKR----GEKDMNELQIAISF 164 ETG ++ E +KD+ +++ + F Sbjct: 123 ETGNIVIQSEDEQLCLSKKDIASIKLKVDF 152 >gi|315502522|ref|YP_004081409.1| hypothetical protein ML5_1726 [Micromonospora sp. L5] gi|315409141|gb|ADU07258.1| protein of unknown function DUF150 [Micromonospora sp. L5] Length = 216 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 77/156 (49%), Gaps = 12/156 (7%) Query: 24 DISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 + VI+PV+ + +S+ + ++++ V+ DG + L ++S+A+S LD Sbjct: 42 RLREVIEPVVTAAGYDLEDLSVSRAGRRHVVRVIVD-ADGGINLDGVADVSRAVSAALDA 100 Query: 83 E-----NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +I+ G Y+LEVSSPG+DRP+ + R G +V + +GD+Q L G+I Sbjct: 101 AEEAGGDIVAGEYQLEVSSPGVDRPLTLPRHWRRNAGRLVKVTVRGDAGDRQ-LTGRITA 159 Query: 138 TSETGFFLEKE----KRGEKDMNELQIAISFDSLLS 169 + LE + + ++ ++ + F+ L Sbjct: 160 ADDERVVLETDAGPAEHPYAELGPGRVQVEFNRLDD 195 >gi|160947564|ref|ZP_02094731.1| hypothetical protein PEPMIC_01499 [Parvimonas micra ATCC 33270] gi|158446698|gb|EDP23693.1| hypothetical protein PEPMIC_01499 [Parvimonas micra ATCC 33270] Length = 154 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 39/151 (25%), Positives = 66/151 (43%), Gaps = 3/151 (1%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAI 76 + L I + ++ E V + ++E K +L+IF+++ DG + L CE S I Sbjct: 4 ENELLKTIEKNFKTILLEKGIYFVNVEYVKEPKGNVLRIFIDK-DGGVDLDSCEMTSNII 62 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 S LD + IE Y LEVSSPG++R + + G V + ++++ IG + Sbjct: 63 SDWLDEVDPIEDSYFLEVSSPGVEREIKSDEQLKTFIGKKVLVKCYKKINNEKEFIGYLK 122 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSL 167 LE + + IAI + Sbjct: 123 SFDREKLTLEI-GKSSIIFSRKDIAIIKSQI 152 >gi|207093098|ref|ZP_03240885.1| hypothetical protein HpylHP_09959 [Helicobacter pylori HPKX_438_AG0C1] Length = 146 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKRIEEKIEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + I+ Y LEVSS G++R + F G V ++ +K+ + + Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLT----NKESFQAVLKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E E K + + Sbjct: 117 DLSADFELEDHAVKSVEYKDL 137 >gi|302865965|ref|YP_003834602.1| hypothetical protein Micau_1466 [Micromonospora aurantiaca ATCC 27029] gi|302568824|gb|ADL45026.1| protein of unknown function DUF150 [Micromonospora aurantiaca ATCC 27029] Length = 216 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 77/156 (49%), Gaps = 12/156 (7%) Query: 24 DISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 + VI+PV+ + +S+ + ++++ V+ DG + L ++S+A+S LD Sbjct: 42 RLREVIEPVVTAAGYDLEDLSVSRAGRRHVVRVIVD-ADGGINLDGVADVSRAVSAALDA 100 Query: 83 E-----NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +I+ G Y+LEVSSPG+DRP+ + R G +V + +GD+Q L G+I Sbjct: 101 AEEAGGDIVAGEYQLEVSSPGVDRPLTLPRHWRRNAGRLVKVTVRGDAGDRQ-LTGRITA 159 Query: 138 TSETGFFLEKE----KRGEKDMNELQIAISFDSLLS 169 + LE + + ++ ++ + F+ L Sbjct: 160 ADDERVVLETDAGPAEHPYAELGPGRVQVEFNRLDD 195 >gi|317009046|gb|ADU79626.1| Ribosome maturation factor rimP [Helicobacter pylori India7] Length = 146 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 70/141 (49%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKKIEEKIEGVIESLGYLLYDVSLVKENEQHILRVSLKNPNGAVSLDICQQVSEIISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + I+ Y LEVSS G++R + F G V ++ +K+ + + Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLT----NKESFQAVLKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E E R K + + Sbjct: 117 DLSADFELEDRAVKSVEYKDL 137 >gi|307637097|gb|ADN79547.1| transcription termination protein [Helicobacter pylori 908] gi|325995688|gb|ADZ51093.1| ribosome maturation factor [Helicobacter pylori 2018] gi|325997284|gb|ADZ49492.1| hypothetical protein hp2017_0406 [Helicobacter pylori 2017] Length = 146 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 70/141 (49%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKRIEEKIEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEVISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + I+ Y LEVSS G++R + F G V +++ +K+ + + Sbjct: 61 LDVCDFIQDAYTLEVSSMGLERTLKTPKHFKLSLGEKVEVKLI----NKESFQAILKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E E K + + Sbjct: 117 DLSADFELEDHAIKSVEYKDL 137 >gi|261839249|gb|ACX99014.1| hypothetical protein HPKB_0406 [Helicobacter pylori 52] Length = 146 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKKIEEKIEGVIESLGYLLYDVSLIKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + I+ Y LEVSS G++R + F G V ++ +K+ + + Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLT----NKESFQAVLKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E E K + + Sbjct: 117 DLSADFELEDHATKSVEYKDL 137 >gi|220907501|ref|YP_002482812.1| hypothetical protein Cyan7425_2088 [Cyanothece sp. PCC 7425] gi|254801539|sp|B8HUA6|RIMP_CYAP4 RecName: Full=Ribosome maturation factor rimP gi|219864112|gb|ACL44451.1| protein of unknown function DUF150 [Cyanothece sp. PCC 7425] Length = 154 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 66/153 (43%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L +I + P+ +++ V +L++ + + +L DCE +S + Sbjct: 5 LIPEILDLAVPLAADLNLEVVGAVFHTHLNPPVLRVDIRNLSADTSLEDCERMSHRLETA 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD +++ G Y LEVSSPGI R + +F+ + G V +++ +G ++ Sbjct: 65 LDAADLVAGTYVLEVSSPGISRLLSSDREFVSFRGFSVIVRTREPIAGQREWVGNLVQRD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 E +L ++ R I+I + +L Sbjct: 125 EEFVYLNQKGRA--------ISIPRHLVTQVQL 149 >gi|257063652|ref|YP_003143324.1| hypothetical protein Shel_09340 [Slackia heliotrinireducens DSM 20476] gi|256791305|gb|ACV21975.1| uncharacterized conserved protein [Slackia heliotrinireducens DSM 20476] Length = 158 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 67/154 (43%), Gaps = 11/154 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++ + ++P ++ V I ++ K ++++++ +G +T D ++ I+ Sbjct: 6 EAELLASLEPRAQQEGMEIVTIEIVGSRKAPTIRVYLDTPEG-VTFDDIAAAQVWVNEIV 64 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + + G Y LEVSSPGIDRP+ F R+ G V + + ++ G E Sbjct: 65 EEIDPFPGAYTLEVSSPGIDRPLRTPEHFARFAGEDVYVMTAKPFDGQSRFNAQLNGFDE 124 Query: 141 TG--FFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + E + ++AI+ + + A + Sbjct: 125 ESGCVLIGLE-------SGEELAIALNDVKKAHV 151 >gi|227495146|ref|ZP_03925462.1| protein of hypothetical function DUF150 [Actinomyces coleocanis DSM 15436] gi|226831598|gb|EEH63981.1| protein of hypothetical function DUF150 [Actinomyces coleocanis DSM 15436] Length = 168 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 41/165 (24%), Positives = 77/165 (46%), Gaps = 10/165 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN--MTLRDCEELS 73 + + ++PV++ + + E +++I V+ ++G ++ D +E+S Sbjct: 1 MSRTAIEEKVLDCVEPVVKAQGLFLEDVKVSERSETVVRIIVDLEEGTYLVSSDDLQEVS 60 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 IS LD + IE Y LE+S+PG +R + + R +V ++ DK +L G Sbjct: 61 WKISEALDAADPIEQAYTLEISTPGAERKLHTPRHYRRSLNRLVEIKL----ADKSELRG 116 Query: 134 KIMGTSETGFFLEKE----KRGEKDMNELQIAISFDSLLSARLIV 174 I E+ LE+E K G K + +SF+++ AR+ V Sbjct: 117 FIREVGESELTLEEEAKAPKPGMKPKPGKLVTVSFENISKARVRV 161 >gi|154249423|ref|YP_001410248.1| hypothetical protein Fnod_0736 [Fervidobacterium nodosum Rt17-B1] gi|259585774|sp|A7HL08|RIMP_FERNB RecName: Full=Ribosome maturation factor rimP gi|154153359|gb|ABS60591.1| protein of unknown function DUF150 [Fervidobacterium nodosum Rt17-B1] Length = 152 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 13/153 (8%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + ++ +P++ M + ++ +L I +++ D ++ RDCE +S I + Sbjct: 8 IIERVRAIAEPIVTSMGLELFDVKYRIQAGKWVLSIIIDKLDDYVSTRDCELVSYEIEKV 67 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + I G Y LEVSSPG+DRP+ + DF R+ G +V + G I+ + Sbjct: 68 LDSHDFIPGRYYLEVSSPGLDRPLKKIEDFRRFVGKLVKVKTKK------TYRGYIVDVN 121 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 K ++ I I +D + SA L Sbjct: 122 MET------KEIILRVDNENITIKYDDVKSANL 148 >gi|259585814|sp|B5Z6E8|RIMP_HELPG RecName: Full=Ribosome maturation factor rimP Length = 146 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKKIEEKIEGVIESLGYLLYDVSLVKENEQHILRVSLKNPNGAVSLDICQQVSEIISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + I+ Y LEVSS G++R + F G V ++ +K+ + + Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLT----NKESFQAVLKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E E K + + Sbjct: 117 DLSADFELEDHAIKSVEYKDL 137 >gi|157363141|ref|YP_001469908.1| hypothetical protein Tlet_0274 [Thermotoga lettingae TMO] gi|166988603|sp|A8F3W0|RIMP_THELT RecName: Full=Ribosome maturation factor rimP gi|157313745|gb|ABV32844.1| protein of unknown function DUF150 [Thermotoga lettingae TMO] Length = 152 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 44/159 (27%), Positives = 77/159 (48%), Gaps = 16/159 (10%) Query: 19 MGLAGDISSVIQPVI----EEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELS 73 M L I ++PV+ ++ I+L E+ +L++ ++ + +++R CE +S Sbjct: 1 MILVKKIIDKLRPVVIDILSQLGLELFDITLRRERRKLVLRVVIDDPENYVSIRQCEIVS 60 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 I LD ++I+ Y LEVSSPG+DRP+ D+ R+ G + + D + L+G Sbjct: 61 SQIGNYLDEADLIDSSYILEVSSPGLDRPLREMKDYNRFVGRLAKIWLK----DGKVLVG 116 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 I T+E +E + N I SFD + +L Sbjct: 117 NIKETTENTVSIELK-------NGEIITFSFDQIKKGKL 148 >gi|254382095|ref|ZP_04997457.1| conserved hypothetical protein [Streptomyces sp. Mg1] gi|194341002|gb|EDX21968.1| conserved hypothetical protein [Streptomyces sp. Mg1] Length = 170 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 6/154 (3%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + +++P++ I + + K +L++ V+ D+G + L C ELS+ IS L Sbjct: 6 SDRLRGLLEPLVAAKGLDLEDIEMSKAGKRRMLRVIVDSDEG-VELDTCAELSREISDQL 64 Query: 81 DVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG-DKQKLIGKIMGT 138 D +++ E Y LEVSSPG DRP+ ++R G +V ++ +L+ +I+ Sbjct: 65 DESDVMGEDEYVLEVSSPGADRPLTEHRHYVRALGRLVKFQLTAGDDKGAGELVARILDV 124 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + G LE G K I+F + AR+ Sbjct: 125 DDEGMDLEV--PGVKGRKATARRIAFTDIAKARV 156 >gi|317180703|dbj|BAJ58489.1| hypothetical protein HPF32_0907 [Helicobacter pylori F32] Length = 146 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKKIEEKIEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEVISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + I+ Y LEVSS G++R + F G V ++ +K+ + + Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLT----NKESFQAVLKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E E K + + Sbjct: 117 DLSADFELEDHAIKSVEYKDL 137 >gi|307067173|ref|YP_003876139.1| hypothetical protein SPAP_0544 [Streptococcus pneumoniae AP200] gi|306408710|gb|ADM84137.1| Uncharacterized protein conserved in bacteria [Streptococcus pneumoniae AP200] Length = 134 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 8/136 (5%) Query: 42 QISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE--NIIEGHYRLEVSSPG 98 I + +++L IFV++ +G +TL D +L++ ISP+LD + Y LE++SPG Sbjct: 2 DIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEMISPVLDTIKPDPFPEQYFLEITSPG 60 Query: 99 IDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNEL 158 ++RP+ K G + + + ++ G ++ E +E + K Sbjct: 61 LERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEEDELTMEYMDKTRKK---- 116 Query: 159 QIAISFDSLLSARLIV 174 + I + + ARL V Sbjct: 117 TVQIPYSLVSKARLAV 132 >gi|326316664|ref|YP_004234336.1| ribosome maturation factor rimP [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373500|gb|ADX45769.1| Ribosome maturation factor rimP [Acidovorax avenae subsp. avenae ATCC 19860] Length = 201 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 77/186 (41%), Gaps = 41/186 (22%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVE-----------------RDDGNMTLR 67 + +++ + + + V+I LL+I ++ + +T+ Sbjct: 3 LQQIVEQTVAGLGYDLVEIE--RSAGGLLRITIDLPWQPPVEGAASDAAPAGPEAFVTVE 60 Query: 68 DCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD 127 DCE++++ + L+V+ + + RLEVSSPGIDRP+ + DF R+ G VV + GD Sbjct: 61 DCEKVTRQLQFALEVDGV--DYKRLEVSSPGIDRPLRHEQDFQRFAGEVVDITLKAPIGD 118 Query: 128 ---------KQKLIGKIMGTSETGFFL-----------EKEKRGEKDMNELQIAISFDSL 167 ++K G + T G+ + +K + + + D L Sbjct: 119 AAAGQVNANRKKFRGTLERTEAGGWQIVWSDEPPPKPGQKVSKKRVPPPLQALGFTLDEL 178 Query: 168 LSARLI 173 ARL Sbjct: 179 RDARLA 184 >gi|139473253|ref|YP_001127968.1| hypothetical protein SpyM50378 [Streptococcus pyogenes str. Manfredo] gi|166990902|sp|A2RCZ7|RIMP_STRPG RecName: Full=Ribosome maturation factor rimP gi|134271499|emb|CAM29720.1| conserved hypothetical protein [Streptococcus pyogenes str. Manfredo] Length = 178 Score = 128 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 67/162 (41%), Gaps = 9/162 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ + P I+ + V + + + +L I V+++ G +T+ D +L+ Sbjct: 21 IANTSIIDIVTKTVTPEIKA-PYELVDVEYDKMGSDYILSILVDKE-GGITVEDTSDLTN 78 Query: 75 AISPILDVENI--IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 ISP+LD + Y LEVSSPG++RP+ G + + + + Sbjct: 79 IISPLLDTIDPDPFPNQYMLEVSSPGLERPLKTADSLKAAVGSYINVSLYQAIDKVKVFQ 138 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G ++ ++ + + + I + + R+ V Sbjct: 139 GDLLAFDGETLTIDYLDKTRHKI----VNIPYQVVAKVRMAV 176 >gi|332673248|gb|AEE70065.1| conserved hypothetical protein [Helicobacter pylori 83] Length = 146 Score = 128 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKKIEEKIEGVIESLGYLLYDVSLIKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + I+ Y LEVSS G++R + F G V ++ +K+ + + Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLT----NKESFQAILKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E E K + + Sbjct: 117 DLSADFELEDHAIKSVEYKDL 137 >gi|317012240|gb|ADU82848.1| Ribosome maturation factor rimP [Helicobacter pylori Lithuania75] Length = 146 Score = 128 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 68/141 (48%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E +L++ ++ +G + L C+++S+ ISP+ Sbjct: 1 MTKRIEEKIEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVNLDICQQVSEIISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + I+ Y LEVSS G++R + F G V ++ +K+ + + Sbjct: 61 LDVCDFIQDAYILEVSSMGLERVLKTPKHFKLSLGEKVEVKLT----NKESFQAVLKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E E K + + Sbjct: 117 DLSADFELEDHAIKSVEYKDL 137 >gi|108562826|ref|YP_627142.1| hypothetical protein HPAG1_0401 [Helicobacter pylori HPAG1] gi|122386653|sp|Q1CUA4|RIMP_HELPH RecName: Full=Ribosome maturation factor rimP gi|107836599|gb|ABF84468.1| hypothetical protein HPAG1_0401 [Helicobacter pylori HPAG1] Length = 146 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 70/141 (49%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKKIEEKIEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEVISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + I+ Y LEVSS G++R + F G V +++ +K+ + + Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLI----NKESFQAVLKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E E K + + Sbjct: 117 DLSADFELEDHAIKSVGYKDL 137 >gi|291546818|emb|CBL19926.1| Uncharacterized protein conserved in bacteria [Ruminococcus sp. SR1/5] Length = 120 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 28/87 (32%), Positives = 54/87 (62%), Gaps = 2/87 (2%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPIL 80 +++ P++E F V + ++E L+ ++++ G +T+ DCE++S+A S IL Sbjct: 8 EQKTEAILTPIVESRGFELVDVEYVKEAGTWYLRGYIDKP-GGITVNDCEDVSRAFSDIL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKS 107 D ++ IE Y +E+SSPG+DRP+ ++ Sbjct: 67 DEQDFIEDSYIMEISSPGLDRPLKKEK 93 >gi|317179205|dbj|BAJ56993.1| hypothetical protein HPF30_0896 [Helicobacter pylori F30] Length = 146 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 70/141 (49%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKKIEEKIEGVIESLGYLLYDVSLIKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + I+ Y LEVSS G++R + F G V ++ +K+ + + Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLT----NKESFQAVLKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E E R K + + Sbjct: 117 DLSADFELEDRAIKSVEYKDL 137 >gi|309809702|ref|ZP_07703557.1| conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] gi|325912543|ref|ZP_08174930.1| hypothetical protein HMPREF0523_0654 [Lactobacillus iners UPII 60-B] gi|308169982|gb|EFO72020.1| conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] gi|325478152|gb|EGC81277.1| hypothetical protein HMPREF0523_0654 [Lactobacillus iners UPII 60-B] Length = 145 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 68/147 (46%), Gaps = 7/147 (4%) Query: 31 PVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVE--NIIE 87 P++ V I ++E N L+I+V+R+ + + + LS+++S LD+ + + Sbjct: 1 PLVHARGDELVDIEYVKENNQNYLRIYVDREPNGIDIDEIATLSESVSEQLDLINPDPLP 60 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LE+SSPG++RP+ ++D+ + V + ++ G ++ LE Sbjct: 61 DPYILELSSPGVERPIKTEADWCKAKDDYVHVGLYKKINGQKSYEGTLLDYDMDKIILEI 120 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 + + +I I + + + R + Sbjct: 121 ----KIKTQQQKITIPRNMIANIRFAI 143 >gi|254779091|ref|YP_003057196.1| hypothetical protein HELPY_0404 [Helicobacter pylori B38] gi|254001002|emb|CAX28946.1| Conserved hypothetical protein [Helicobacter pylori B38] Length = 146 Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 68/141 (48%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKRIEEKIEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEVISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + I+ Y LEVSS G++R + F G V + +K+ + + Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKPT----NKESFQAILKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E E K + + Sbjct: 117 DWSADFELEDHAIKSVEYKDL 137 >gi|188527211|ref|YP_001909898.1| hypothetical protein HPSH_02090 [Helicobacter pylori Shi470] gi|226701161|sp|B2USN6|RIMP_HELPS RecName: Full=Ribosome maturation factor rimP gi|188143451|gb|ACD47868.1| hypothetical protein HPSH_02090 [Helicobacter pylori Shi470] gi|261837834|gb|ACX97600.1| hypothetical protein KHP_0389 [Helicobacter pylori 51] gi|297379622|gb|ADI34509.1| UPF0090 protein [Helicobacter pylori v225d] gi|308061753|gb|ADO03641.1| Ribosome maturation factor rimP [Helicobacter pylori Cuz20] gi|308063263|gb|ADO05150.1| Ribosome maturation factor rimP [Helicobacter pylori Sat464] Length = 146 Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKKIEEKIEGVIESLGYLLYDVSLIKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + I+ Y LEVSS G++R + F G V ++ +K+ + + Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLT----NKESFQAVLKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E E K + + Sbjct: 117 DLSADFELEDHAIKSVEYKDL 137 >gi|94994922|ref|YP_603020.1| hypothetical protein MGAS10750_Spy1526 [Streptococcus pyogenes MGAS10750] gi|166979761|sp|Q1J5B0|RIMP_STRPF RecName: Full=Ribosome maturation factor rimP gi|94548430|gb|ABF38476.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS10750] Length = 178 Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 67/159 (42%), Gaps = 9/159 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + ++ + P I+ + V + + + +L I V+++ G +T+ D +L+ IS Sbjct: 24 TSIIDIVTKTVTPEIKA-PYELVDVEYDKMGSDYILSILVDKE-GGITVEDTSDLTNIIS 81 Query: 78 PILDVENI--IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 P+LD + Y LEVSSPG++RP+ G + + + + G + Sbjct: 82 PLLDTIDPDPFPNQYMLEVSSPGLERPLKTADSLKAAVGSYINVSLYQAIDKVKVFQGDL 141 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + ++ + + + I + ++ R+ V Sbjct: 142 LAFDGETLTIDYLDKTRHKI----VNIPYQAVAKVRMAV 176 >gi|256851260|ref|ZP_05556649.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN] gi|260660684|ref|ZP_05861599.1| UPF0090 protein [Lactobacillus jensenii 115-3-CHN] gi|282934728|ref|ZP_06339971.1| conserved hypothetical protein [Lactobacillus jensenii 208-1] gi|256616322|gb|EEU21510.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN] gi|260548406|gb|EEX24381.1| UPF0090 protein [Lactobacillus jensenii 115-3-CHN] gi|281301303|gb|EFA93604.1| conserved hypothetical protein [Lactobacillus jensenii 208-1] Length = 158 Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 69/159 (43%), Gaps = 7/159 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 + ++ ++ P+ E+ V + ++EKN L+I+V+R + + + + LS+ +S Sbjct: 2 TKIIDLVTDLVTPLAEKRGDELVDVEYVKEKNQYYLRIYVDRGESGIDIEEIAALSEIVS 61 Query: 78 PILDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + Y LE+SSPG++RP+ + D+ + + ++ G + Sbjct: 62 EELDKLNPDPFTEPYMLELSSPGLERPIKNERDWNKALNKYIHVACYQKIDGQKSFDGTL 121 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + ++ I ++ +AR + Sbjct: 122 LSRDNKK----ITLKIKIKTRTKELEIPIGAIANARFAI 156 >gi|269215360|ref|ZP_06159214.1| hypothetical protein HMPREF0762_00005 [Slackia exigua ATCC 700122] gi|269131216|gb|EEZ62290.1| hypothetical protein HMPREF0762_00005 [Slackia exigua ATCC 700122] Length = 157 Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 63/152 (41%), Gaps = 8/152 (5%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + ++P E V I ++ K ++++++ + G + D I+ IL Sbjct: 6 EASLLAALEPRAIEEGIEIVTIEVVGSRKAPTIRVYIDTEQG-IVFDDIAAAQAWINEIL 64 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D + G Y LEVSSPGIDRP+ + F G V + + G ++G +E Sbjct: 65 DEIDPFPGAYTLEVSSPGIDRPLRTRGHFEAAVGEQVYATCSEPVDGRSRFSGTLLGVAE 124 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G ++ ++ + F + A + Sbjct: 125 DG------GAIRLSVDGDEVVLPFSIIKRAHI 150 >gi|15611447|ref|NP_223098.1| hypothetical protein jhp0379 [Helicobacter pylori J99] gi|6648012|sp|Q9ZM44|RIMP_HELPJ RecName: Full=Ribosome maturation factor rimP gi|4154909|gb|AAD05958.1| putative [Helicobacter pylori J99] Length = 146 Score = 127 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 70/141 (49%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKKIEEKIEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + I+ Y LEVSS G++R + F G V +++ +K+ + + Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLI----NKESFQAVLKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E + K + + Sbjct: 117 DLSADFELDNHAIKSVEYKDL 137 >gi|297206127|ref|ZP_06923522.1| protein of hypothetical function DUF150 [Lactobacillus jensenii JV-V16] gi|297149253|gb|EFH29551.1| protein of hypothetical function DUF150 [Lactobacillus jensenii JV-V16] Length = 169 Score = 127 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 70/159 (44%), Gaps = 7/159 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 + ++ ++ P+ E+ V + ++EKN L+I+V+R + + + + LS+ +S Sbjct: 13 TKIIDLVTDLVTPLAEKRGDELVDVEYVKEKNQYYLRIYVDRGESGIDIEEIAALSEIVS 72 Query: 78 PILDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + Y LE+SSPG++RP+ + D+ + + ++ G + Sbjct: 73 EELDKLNPDPFTEPYMLELSSPGLERPIKNERDWNKALNKYIHVACYQKIDGQKSFDGTL 132 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + + ++ I ++ +AR + Sbjct: 133 LSRDNK----KITLKIKIKTRTKELEIPIGAIANARFAI 167 >gi|313897501|ref|ZP_07831044.1| conserved hypothetical protein [Clostridium sp. HGF2] gi|312957871|gb|EFR39496.1| conserved hypothetical protein [Clostridium sp. HGF2] Length = 155 Score = 127 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 5/157 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 M + +I ++ E ++ E + +LQ+ + DG+M + C S+ IS Sbjct: 1 MDQIQKLKELITLLVAEDGIELYDVAWHTEGSMRILQVSIMHKDGSMDIDTCAAQSEKIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LD ++I Y LEV SPG +R + + G V ++ ++ G + Sbjct: 61 TMLDEMDMIASEYFLEVCSPGAERELKSEEQIRDAIGEFVYVKLKNPRAGMDEIKGTLTA 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +L+ + K E I D++ RL V Sbjct: 121 FENNTVYLDYMAKAVKKKAE----IEMDNIALIRLSV 153 >gi|302537259|ref|ZP_07289601.1| conserved hypothetical protein [Streptomyces sp. C] gi|302446154|gb|EFL17970.1| conserved hypothetical protein [Streptomyces sp. C] Length = 170 Score = 127 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 46/154 (29%), Positives = 78/154 (50%), Gaps = 6/154 (3%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + +++P++ I L + K +L+I V+ D+G + L +C ELS+ IS L Sbjct: 6 SDRLRGLLEPLVAAKGLDLEDIELSKAGKRRMLRIIVDSDEG-VDLDECAELSREISDRL 64 Query: 81 DVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV-LSSGDKQKLIGKIMGT 138 D +++ E Y LEVSSPG DRP+ + ++R G +V ++ +LI +I+G Sbjct: 65 DESDVMGEDEYNLEVSSPGADRPLSERRHYVRATGRLVKFQLSAEGEKGAGELIARILGV 124 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + G LE G K I+F + AR+ Sbjct: 125 DDEGMDLEV--PGVKGRKATARRIAFTDVAKARV 156 >gi|206602207|gb|EDZ38689.1| Conserved protein of unknown function [Leptospirillum sp. Group II '5-way CG'] Length = 167 Score = 127 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 9/153 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 M ++ ++ P + + L + + ++FV+ G + L E +S+ IS Sbjct: 1 MRFEKELDHILTP----LGLSLHDLVLPGKNGGVFKVFVDHPKG-VGLDQLEAVSRRISD 55 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LDV + G YRLEVSSPG+DR + D L G + + ++ G I G+ Sbjct: 56 LLDVLDPFPGKYRLEVSSPGLDRVLRIPEDLLLHVGKHIKVKTKEPLQGQRVFRGTI-GS 114 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 E G L G+K +L+ +I D + R Sbjct: 115 LEAGVLLISSVEGKK---QLKHSIPLDLVAEVR 144 >gi|322378931|ref|ZP_08053345.1| hypothetical protein HSUHS1_0574 [Helicobacter suis HS1] gi|322379785|ref|ZP_08054082.1| hypothetical protein HSUHS5_0146 [Helicobacter suis HS5] gi|321147753|gb|EFX42356.1| hypothetical protein HSUHS5_0146 [Helicobacter suis HS5] gi|321148607|gb|EFX43093.1| hypothetical protein HSUHS1_0574 [Helicobacter suis HS1] Length = 152 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 75/152 (49%), Gaps = 13/152 (8%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 ++ ++++ ++ M ++ L+E K +L+I ++ +G +L CEE S ISP+LD Sbjct: 5 TELENLLETTLKGMGCALYDVAFLKENKRDILRISIKALEGPTSLDICEEASLLISPLLD 64 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 V + Y LEVSS G++R + + F G +V C+ + + +L G I + + Sbjct: 65 VHAPFKNAYTLEVSSMGLERSLSKLKHFKLSIGDLVECKTI----ENTRLKGVIQAVNGS 120 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L+ + E + F+++ A+ I Sbjct: 121 SIVLQCAEGLEN--------LPFENIKKAKTI 144 >gi|161507685|ref|YP_001577639.1| hypothetical protein lhv_1346 [Lactobacillus helveticus DPC 4571] gi|172048309|sp|A8YVR1|RIMP_LACH4 RecName: Full=Ribosome maturation factor rimP gi|160348674|gb|ABX27348.1| hypothetical protein lhv_1346 [Lactobacillus helveticus DPC 4571] Length = 158 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 70/159 (44%), Gaps = 11/159 (6%) Query: 23 GDISSVIQPVIE----EMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAIS 77 + +++PV+E E V + ++EK L+I+V+R + + + LS+ +S Sbjct: 2 SKVVDLVRPVVETIIDEHGDMLVDMEYVKEKGQNYLRIYVDRQPNGIDIDEIAALSELVS 61 Query: 78 PILDVENI--IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + + Y LE+SSPG +RP+ ++D+ R V + DK+ G + Sbjct: 62 EKLDTIDPDPLPDPYVLELSSPGAERPIKTEADWKRALNDYVHIGLYQKIDDKKVYEGTL 121 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + LE + + + ++ I + R + Sbjct: 122 KYYNNDEIVLEVKDKTRRK----KLTIPRKLIAKIRFAI 156 >gi|325957050|ref|YP_004292462.1| ribosome maturation protein RimP [Lactobacillus acidophilus 30SC] gi|325333615|gb|ADZ07523.1| ribosome maturation protein RimP [Lactobacillus acidophilus 30SC] gi|327183773|gb|AEA32220.1| ribosome maturation protein RimP [Lactobacillus amylovorus GRL 1118] Length = 158 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 70/153 (45%), Gaps = 7/153 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + V++P+I+E V + ++EK L+I+V+R+ + + + LS+ +S LD Sbjct: 8 VRPVVEPIIDEHGDMLVDMEYVKEKGQNYLRIYVDREPNGIDIDEIAALSELVSEKLDTI 67 Query: 84 --NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + Y LE+SSPG +RP+ ++D+ + + + DK+ G + ++ Sbjct: 68 NPDPFPEPYVLELSSPGAERPIKTEADWKKALNDYIHIGLYQKIKDKKVYEGTLKSYNDE 127 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 LE + + + + + + R + Sbjct: 128 EIVLEVRDKTRRK----TLTVPRKLIANIRFAI 156 >gi|302335789|ref|YP_003800996.1| protein of unknown function DUF150 [Olsenella uli DSM 7084] gi|301319629|gb|ADK68116.1| protein of unknown function DUF150 [Olsenella uli DSM 7084] Length = 157 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 73/161 (45%), Gaps = 13/161 (8%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGN---MTLRDCEE 71 L + + ++ V + ++ K ++++ ++ D ++L + Sbjct: 1 MATTDLERQLVTALEDAARSHGIDVVDVEVVGSSKAPVVRVRIDHADEGVPTISLDEVAA 60 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 S I+ +LD + I G Y LEVSSPG+ RP+ ++ DF R+ G V+ + + +++ Sbjct: 61 QSGWINEVLDDADPIAGSYVLEVSSPGLARPLRKERDFERFAGSDVSLKTF-AREGRRRF 119 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G+++G +E E +++++ D + S + Sbjct: 120 TGRLLGVEGGRVVVE--------CGEERVSLALDDIKSCHV 152 >gi|241895993|ref|ZP_04783289.1| hypothetical protein of function DUF150 [Weissella paramesenteroides ATCC 33313] gi|241870724|gb|EER74475.1| hypothetical protein of function DUF150 [Weissella paramesenteroides ATCC 33313] Length = 235 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 81/172 (47%), Gaps = 8/172 (4%) Query: 11 YEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDC 69 +E R + ++ ++++P++ + F + ++ + +L++ V+R DG + + D Sbjct: 2 HEGR-VRMAKVTENVQAILKPILAKKGFDLWDVLYEKQDSDFVLRVLVDRVDGEINMDDL 60 Query: 70 EELSQAISPILDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD 127 L++ IS LD+ + Y L+VSSPG DR + + +F+ G + + Sbjct: 61 VMLTEVISDELDMITPDPFPQAYLLDVSSPGADRELQQPGNFVWAVGKFIEVILNNPVAG 120 Query: 128 KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELL 179 +K G+++ + ++ + + + I I D++ A L V+ + + Sbjct: 121 LEKFTGQLVSFLDDKLTIDVALKTKHQL----IEIDLDNIQKANLSVSQDRI 168 Score = 48.9 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 10/72 (13%), Positives = 25/72 (34%), Gaps = 7/72 (9%) Query: 100 DRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQ 159 DR + + D+ +V +++ +G++ + + E E Sbjct: 166 DRILTTEEDYEWARHKLVHISTYQKINGRKEFLGELNNFTPEDLIITDESNDE------- 218 Query: 160 IAISFDSLLSAR 171 + I ++ AR Sbjct: 219 LLIPRRAVAQAR 230 >gi|15645660|ref|NP_207836.1| hypothetical protein HP1046 [Helicobacter pylori 26695] gi|6647978|sp|O25687|RIMP_HELPY RecName: Full=Ribosome maturation factor rimP gi|2314193|gb|AAD08091.1| conserved hypothetical protein [Helicobacter pylori 26695] Length = 146 Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 68/141 (48%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I VIE + + +SL++E +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKKIEEKIGGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + I+ Y LEVSS G++R + F G V ++ +K+ + + Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLT----NKESFQAVLKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E E K + + Sbjct: 117 DLSADFELEDHAIKSVEYKDL 137 >gi|315586392|gb|ADU40773.1| conserved hypothetical protein [Helicobacter pylori 35A] gi|317181743|dbj|BAJ59527.1| hypothetical protein HPF57_0453 [Helicobacter pylori F57] Length = 146 Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 68/141 (48%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL+ E +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKKIEEKIEGVIESLGYLLYDVSLIRENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + I+ Y LEVSS G++R + F G V ++ +K+ + + Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLT----NKESFQAVLKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E E K + + Sbjct: 117 DLSADFELEDHAIKSVEYKDL 137 >gi|315038576|ref|YP_004032144.1| hypothetical protein LA2_07130 [Lactobacillus amylovorus GRL 1112] gi|312276709|gb|ADQ59349.1| hypothetical protein LA2_07130 [Lactobacillus amylovorus GRL 1112] Length = 158 Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 70/153 (45%), Gaps = 7/153 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + V++P+I+E V + ++EK L+I+V+R+ + + + LS+ +S LD Sbjct: 8 VRPVVEPIIDEHGDMLVDMEYVKEKGQNYLRIYVDREPNGIDIDEIAALSELVSEKLDTI 67 Query: 84 --NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + Y LE+SSPG +RP+ ++D+ + + + DK+ G + ++ Sbjct: 68 NPDPFPEPYVLELSSPGAERPIKTEADWKKALNDYIHIGLYQKIMDKKVYEGTLKSYNDE 127 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 LE + + + + + + R + Sbjct: 128 EIVLEVRDKTRRK----TLTVPRKLIANIRFAI 156 >gi|153813000|ref|ZP_01965668.1| hypothetical protein RUMOBE_03407 [Ruminococcus obeum ATCC 29174] gi|149830947|gb|EDM86037.1| hypothetical protein RUMOBE_03407 [Ruminococcus obeum ATCC 29174] Length = 129 Score = 127 bits (319), Expect = 9e-28, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 52/87 (59%), Gaps = 2/87 (2%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 +++ P++E F V + ++E N L+ ++++ G +T+ DCE +S+A S L Sbjct: 35 EQKAEALLAPIVEGQGFELVDVEYVKEAGNWYLRGYIDKP-GGITVNDCEAVSRAFSDKL 93 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKS 107 D + IE Y +E+SSPG+DRP+ R+ Sbjct: 94 DENDFIEDSYIMEISSPGLDRPLKRRR 120 >gi|308184203|ref|YP_003928336.1| Ribosome maturation factor rimP [Helicobacter pylori SJM180] gi|308060123|gb|ADO02019.1| Ribosome maturation factor rimP [Helicobacter pylori SJM180] Length = 146 Score = 127 bits (319), Expect = 9e-28, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKKIEEKIEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + I+ Y LEVSS G++R + F G V ++ +K+ + + Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKIPKHFKLSLGEKVEVKLT----NKESFQAILKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E E K + + Sbjct: 117 DWSADFELENHAIKSVEYKDL 137 >gi|326692689|ref|ZP_08229694.1| hypothetical protein LargK3_02896 [Leuconostoc argentinum KCTC 3773] Length = 158 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 76/158 (48%), Gaps = 14/158 (8%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGN-MTLRDCEELSQAISP 78 + +I+++I P++ E + ++ +E +L+I V++ D +T+ D + +QA++ Sbjct: 5 VEQEITALITPILVEQNDLLWDLTYTKEGGQKVLRIMVDKPDHTFITMADITDFTQAVND 64 Query: 79 ILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFL--RWNGHVVACEIVLSSGDKQKLIGK 134 +LD + I Y L++SSPG DRP+ + + + + + + ++K GK Sbjct: 65 LLDTVEPDPIPEAYLLDISSPGADRPLKQPWHYKWAQEADETILVALFAAKDGQKKWQGK 124 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + ++ G L + +++ FD + A L Sbjct: 125 VKSVTDDGIVL--------STAQGDLSLQFDEIAKAVL 154 >gi|124515702|gb|EAY57211.1| conserved protein of unknown function [Leptospirillum rubarum] Length = 167 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 9/153 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 M ++ ++ P + + L + + ++FV+ G + L E +S+ IS Sbjct: 1 MRFEKELDHILTP----LGLSLHDLVLPGKNRGVFKVFVDHPQG-VGLDQLEAVSRRISD 55 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LDV + G YRLEVSSPG+DR + D L G + ++ ++ G I G+ Sbjct: 56 LLDVLDPFPGKYRLEVSSPGLDRVLRIPEDLLLHVGKHIKVKMKEPFQGQRVFRGTI-GS 114 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 E G L G+K +L+ +I D + R Sbjct: 115 LEAGVLLISSVEGKK---QLKHSIPLDLVAEVR 144 >gi|16329286|ref|NP_440014.1| hypothetical protein slr0742 [Synechocystis sp. PCC 6803] gi|1651766|dbj|BAA16694.1| slr0742 [Synechocystis sp. PCC 6803] Length = 176 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 9/145 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 + DI ++ QP+ E++ K +L+I + + +L DCE S++ Sbjct: 30 VIPDILALAQPIAEDLGLEVTDAVFQTNKRPPVLRIDIRNLQQDTSLNDCEAFSRSFEAQ 89 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 L+ ++I Y LEVSSPGI + + DF+ + G V + + G + G Sbjct: 90 LEESSLIASAYVLEVSSPGISPYLATERDFIAFKGFEVVVTSDNPHQGQSQWQGSLQGRD 149 Query: 140 ETGFFLEKEKRGEKDMNELQIAISF 164 +L R +AI Sbjct: 150 GEAVYLSIRGR--------TVAIPL 166 >gi|187478886|ref|YP_786910.1| hypothetical protein BAV2396 [Bordetella avium 197N] gi|123514388|sp|Q2KXY5|RIMP_BORA1 RecName: Full=Ribosome maturation factor rimP gi|115423472|emb|CAJ50006.1| conserved hypothetical protein [Bordetella avium 197N] Length = 159 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 79/153 (51%), Gaps = 9/153 (5%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 D+ ++ + + M V + LL++ ++R+DG + + DCE++S+ +S + +V Sbjct: 2 ADLFALTEEALAGMGIELVDVE--RAALGLLRVTIDREDG-VRIEDCEQVSRQLSRVYEV 58 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS--- 139 ENI + RLEV SPG+DRP+ +++F R+ G + ++ + ++ G + Sbjct: 59 ENI--DYKRLEVGSPGVDRPLRNEAEFRRFAGERIEIKLREAVDGRKVFTGILQEADTSA 116 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + E +KD ++ ++ + D + A+L Sbjct: 117 DDKTVFGLEFEAKKDDIQV-LSFTLDDIERAKL 148 >gi|317010677|gb|ADU84424.1| Ribosome maturation factor rimP [Helicobacter pylori SouthAfrica7] Length = 146 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 72/141 (51%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E + +L++ ++ +G ++L +C+++S+ ISP+ Sbjct: 1 MTKRIEERIEGVIESLGYLLYDVSLIKENEHNILRVSLKNPNGAVSLDNCQQVSEVISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + ++ Y LEVSS G++R + F G V ++V +K+ + + Sbjct: 61 LDVCDFLKDAYILEVSSMGLERVLKTPKHFKLSLGEKVGVKLV----NKESFQAILKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E E K + + Sbjct: 117 DLSADFELEDHTIKSVEYKDL 137 >gi|317177213|dbj|BAJ55002.1| hypothetical protein HPF16_0405 [Helicobacter pylori F16] Length = 146 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 69/141 (48%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ +IE + + +SL++E +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKKIEEKIEGMIESLGYLLYDVSLIKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + I+ Y LEVSS G++R + F G V ++ +K+ + + Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLT----NKESFQAVLKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E E K + + Sbjct: 117 DLSADFELEDHAIKSVEYKDL 137 >gi|15604409|ref|NP_220926.1| hypothetical protein RP554 [Rickettsia prowazekii str. Madrid E] gi|6647940|sp|Q9ZCZ6|RIMP_RICPR RecName: Full=Ribosome maturation factor rimP gi|3861103|emb|CAA15003.1| unknown [Rickettsia prowazekii] Length = 117 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 34/109 (31%), Positives = 64/109 (58%), Gaps = 1/109 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-MTLRDCEELSQAISPI 79 +A I+++I+ + +M F V + ++++ ++ +GN +++ DC +S+ IS I Sbjct: 4 IAQQITNIIEESLTDMGFELVLVKFKGVSPKVVEVLIDSLNGNKISIEDCTNVSRTISAI 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 LDVE++IE Y LEVSS GI+R +V+ ++ R+ G V ++ K Sbjct: 64 LDVEDLIEEAYSLEVSSSGIERTLVKFENYNRFLGREVKIKLKELLNGK 112 >gi|328465728|gb|EGF36932.1| ribosome maturation protein RimP [Lactobacillus helveticus MTCC 5463] Length = 158 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 69/153 (45%), Gaps = 7/153 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + VI+ +I+E V + ++EK L+I+V+R + + + LS+ +S LD Sbjct: 8 VRPVIETIIDEHGDMLVDMEYVKEKGQNYLRIYVDRQPNGIDIDEIAALSELVSEKLDTI 67 Query: 84 NI--IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + + Y LE+SSPG +RP+ ++D+ R V + DK+ G + + Sbjct: 68 DPDPLPDPYVLELSSPGAERPITTEADWKRALNDYVHIGLYQKIDDKKVYEGTLKYYNND 127 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 LE + + + ++ I + R + Sbjct: 128 EIVLEVKDKTRRK----KLTIPRKLIAKIRFAI 156 >gi|255994862|ref|ZP_05427997.1| conserved hypothetical protein [Eubacterium saphenum ATCC 49989] gi|255993575|gb|EEU03664.1| conserved hypothetical protein [Eubacterium saphenum ATCC 49989] Length = 187 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 77/189 (40%), Gaps = 43/189 (22%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVE--------------------- 58 + + + + E+S + E K+ +L+++++ Sbjct: 5 IENAVEEACKAKLAELSLEIYSVEYKREGKDWILRVYIDRMFCEDAVGIGYDKQAGMNTD 64 Query: 59 -------------RDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVR 105 + + + + +C +S+AIS LD +II+ +Y LEVS+PGIDR + + Sbjct: 65 ARCQKAQGIKADSKREKPIGIDECTAISEAISEYLDKNDIIDNNYYLEVSTPGIDRELKK 124 Query: 106 KSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFD 165 DF+R+ G V + +++ G ++ ++ G +E ++ + N + Sbjct: 125 DIDFIRFKGRSVDISLYKRIDGQKEYRGTLIEKNDEGIAVEVDESTKVFSN--------N 176 Query: 166 SLLSARLIV 174 + L + Sbjct: 177 DVAKVNLAI 185 >gi|217077787|ref|YP_002335505.1| hypothetical protein THA_1728 [Thermosipho africanus TCF52B] gi|259645125|sp|B7IDT7|RIMP_THEAB RecName: Full=Ribosome maturation factor rimP gi|217037642|gb|ACJ76164.1| hypothetical protein THA_1728 [Thermosipho africanus TCF52B] Length = 148 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 69/153 (45%), Gaps = 13/153 (8%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + + + ++ + I + L+I ++ ++ +DCE +S+ + Sbjct: 4 IVSKVKEIAESACKKYNLELFDIKYYNKSGKWFLEIVIDNPLDYVSTKDCENISREVEFQ 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD +II Y L VSSPG+DRP+ DF R+ + V ++ + + +IG I Sbjct: 64 LDKLDIIPQRYYLTVSSPGLDRPLRSIDDFKRFINNKVKIKL-----ENETIIGYIKDVK 118 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ FLE+ + K I ++ + A L Sbjct: 119 DSVIFLEENNKKIK-------EIKYNQIKKANL 144 >gi|312875705|ref|ZP_07735702.1| conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] gi|311088770|gb|EFQ47217.1| conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] Length = 144 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 68/146 (46%), Gaps = 7/146 (4%) Query: 32 VIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVE--NIIEG 88 ++ V I ++E N L+I+V+R+ + + + LS+++S LD+ + + Sbjct: 1 LVHARGDELVDIEYVKENNQNYLRIYVDREPNGIDIDEIATLSESVSEQLDLINPDPLPD 60 Query: 89 HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKE 148 Y LE+SSPG++RP+ ++D+ + V + ++ G ++ LE Sbjct: 61 PYILELSSPGVERPIKTEADWCKAKNDYVHVGLYKKINGQKSYEGTLLDYDMDKIILEI- 119 Query: 149 KRGEKDMNELQIAISFDSLLSARLIV 174 + + +IAI + + + R + Sbjct: 120 ---KIKTQQQKIAIPRNMIANIRFAI 142 >gi|256843342|ref|ZP_05548830.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN] gi|256849839|ref|ZP_05555270.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US] gi|262046915|ref|ZP_06019875.1| conserved hypothetical protein [Lactobacillus crispatus MV-3A-US] gi|293381213|ref|ZP_06627221.1| SP14.3 family protein [Lactobacillus crispatus 214-1] gi|295693138|ref|YP_003601748.1| hypothetical protein LCRIS_01276 [Lactobacillus crispatus ST1] gi|312978243|ref|ZP_07789987.1| SP14.3 protein [Lactobacillus crispatus CTV-05] gi|256614762|gb|EEU19963.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN] gi|256713328|gb|EEU28318.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US] gi|260572897|gb|EEX29457.1| conserved hypothetical protein [Lactobacillus crispatus MV-3A-US] gi|290922253|gb|EFD99247.1| SP14.3 family protein [Lactobacillus crispatus 214-1] gi|295031244|emb|CBL50723.1| UPF0090 protein [Lactobacillus crispatus ST1] gi|310894961|gb|EFQ44031.1| SP14.3 protein [Lactobacillus crispatus CTV-05] Length = 158 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 71/157 (45%), Gaps = 7/157 (4%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 + + V++ +I+E V + ++EK L+I+V+R + + + LS+ +S Sbjct: 4 VIDSVRPVVETIIDEHGDMLVDMEYVKEKGQNYLRIYVDRQPNGIDIDEIAALSELVSEK 63 Query: 80 LDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + + Y LE+SSPG +RP+ K+D+ + + + +K+ G + Sbjct: 64 LDALDPDPLPDPYVLELSSPGAERPIKTKADWEKALNDYIHVGLYQKIENKKMYEGTLKS 123 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ LE + + + + + + + R + Sbjct: 124 YNDDEVVLEIKDKTRRK----TLTVPRKLIANIRFAI 156 >gi|171058382|ref|YP_001790731.1| hypothetical protein Lcho_1699 [Leptothrix cholodnii SP-6] gi|226736416|sp|B1XY65|RIMP_LEPCP RecName: Full=Ribosome maturation factor rimP gi|170775827|gb|ACB33966.1| protein of unknown function DUF150 [Leptothrix cholodnii SP-6] Length = 183 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 42/178 (23%), Positives = 78/178 (43%), Gaps = 23/178 (12%) Query: 26 SSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTL---------RDCEELSQAI 76 ++ + M + V+ LL ++++R G++ L DCE +++ + Sbjct: 4 QQAVETTVTGMGYELVECE--RSARGLLCVYIDRVPGSVYLTGPGEFVLVEDCELVTRQL 61 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 + +VEN+ + RLEVSSPG+DRP+ + DFLR+ G V + ++ G + Sbjct: 62 RYLFEVENV--DYSRLEVSSPGLDRPLRKVGDFLRFLGSDVDVTLKAPFQGRKNYRGLLR 119 Query: 137 GTSET---GFFLEKEKRGEKDMNELQIAISFDSLLSARLI-VTDELLRASLNNYGSYA 190 +T GF L + E + + + D + ARL+ V D + + Sbjct: 120 QAGDTPEQGFELVFQDGKEDKV----LGFALDEVREARLVPVVD--FKGRMRQTADAP 171 >gi|83816343|ref|YP_445896.1| hypothetical protein SRU_1779 [Salinibacter ruber DSM 13855] gi|83757737|gb|ABC45850.1| Uncharacterized BCR, YhbC family COG0779 [Salinibacter ruber DSM 13855] Length = 217 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 79/155 (50%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 LA +S + + VI + V + + K +++++++ ++ + D +S+ I + Sbjct: 70 LADRVSGLTEEVIVGTDYFLVDVEVRGHKGTRVVEVYIDSEE-EVGHDDLALISKEIGFL 128 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE++++G Y+LE+SSPGI RP+ + + + G + S GD++ ++G + Sbjct: 129 LDVEDVVDGSYKLELSSPGIKRPLTMPAQYRKNVGRTLRVR-FESDGDEEIVVGDLTDAD 187 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + LE + ++ + + ++ AR+ + Sbjct: 188 DEEIELEL-------PSAERLQLPYTTITQARIEL 215 >gi|330718232|ref|ZP_08312832.1| hypothetical protein LfalK3_02050 [Leuconostoc fallax KCTC 3537] Length = 158 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 74/160 (46%), Gaps = 14/160 (8%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGN-MTLRDCEELSQAISP 78 + ++ +++PVI+E ++ E +L+I +++ D +T+ D +L++ I+ Sbjct: 5 VEQTVAQLVKPVIDEHGDILWDLTFGNEGGQRVLRILIDKADHEFITMNDLTKLTEEINE 64 Query: 79 ILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFL--RWNGHVVACEIVLSSGDKQKLIGK 134 +LD + I G Y L++SSPG DRP+ + + + + ++ ++K GK Sbjct: 65 LLDNSEPDPIPGTYMLDISSPGADRPLKALWHYQWAQEADENILVSLFVAKNGRKKWQGK 124 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 I ++ L + + ++F + A L V Sbjct: 125 ISEINDDAIVLITDDE--------TLTLAFSEIAKASLDV 156 >gi|325677900|ref|ZP_08157542.1| hypothetical protein CUS_7307 [Ruminococcus albus 8] gi|324110454|gb|EGC04628.1| hypothetical protein CUS_7307 [Ruminococcus albus 8] Length = 183 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 63/153 (41%), Gaps = 3/153 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++ + QP+ +E+ + +E L++ +++ DG +T+ DCE ++ + IL Sbjct: 16 VERVTELAQPLADELGLFLWDVRFEKEGATWYLRVLIDK-DGGVTMEDCENFTRPFNKIL 74 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS-GDKQKLIGKIMGTS 139 D E+ I Y E SPG+ R + + F G V ++ +++ I ++G Sbjct: 75 DDEDPIAQSYVFECGSPGLGRELRKPIHFEVCIGDAVRVRLIRPDENGEREFIVGLVGYD 134 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + E + +L Sbjct: 135 DEEKVIACQTLDENGDGVENVQFRLSDCAFVKL 167 >gi|309804399|ref|ZP_07698473.1| conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] gi|308163514|gb|EFO65787.1| conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] Length = 144 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 67/146 (45%), Gaps = 7/146 (4%) Query: 32 VIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVE--NIIEG 88 ++ V I ++E N L+I+V+R+ + + + LS+++S LD+ + + Sbjct: 1 LVHARGDELVDIEYVKENNQNYLRIYVDREPNGIDIDEIATLSESVSEQLDLINPDPLPD 60 Query: 89 HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKE 148 Y LE+SSPG++RP+ ++D+ + V + ++ G ++ LE Sbjct: 61 PYILELSSPGVERPIKTEADWCKAKNDYVHVGLYKKINGQKSYEGTLLDYDMDKIILEI- 119 Query: 149 KRGEKDMNELQIAISFDSLLSARLIV 174 + +IAI + + + R + Sbjct: 120 ---KIKTQPKKIAIPRNMIANIRFAI 142 >gi|325847928|ref|ZP_08170099.1| hypothetical protein HMPREF9246_0391 [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480797|gb|EGC83851.1| hypothetical protein HMPREF9246_0391 [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 146 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 10/151 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M L + ++ I + + V I + E KN +L+ F+ + DG +T+ DCE+ S +S Sbjct: 1 MDLISKLKENLESDINNLGYELVDIEFVTEGKNKILRFFIYK-DGGITIDDCEKTSNLLS 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD ++I+ Y LEVSSP + RP+ D R ++ ++ + +K + I Sbjct: 60 ERLDEIDLIKSFYYLEVSSPDLSRPLKTDRDLERNKDELLEVKLK----NGEKFLANIEE 115 Query: 138 TSETGFFLEKEKR----GEKDMNELQIAISF 164 E + E + ++ ++I I F Sbjct: 116 IKEDSLVFKCEDGQKEVDKNEIKTIKIEIVF 146 >gi|283850805|ref|ZP_06368091.1| protein of unknown function DUF150 [Desulfovibrio sp. FW1012B] gi|283573728|gb|EFC21702.1| protein of unknown function DUF150 [Desulfovibrio sp. FW1012B] Length = 181 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 66/160 (41%), Gaps = 13/160 (8%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVE--------RDDGNMTLRDCEELS 73 I +I P + M + L + L++++++ + +T+ +C S Sbjct: 9 DKIRELISPFLASMGLVVWGVELAASGHRQLVRLYLDLAADTPRTPERRGVTIDECARAS 68 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 + ++ +L++E++ Y LEVSSPG+ R + + G V+ ++ + +++ G Sbjct: 69 RHLATLLEMEDLFHDPYVLEVSSPGLGRRFFEPAQLPAYVGQVIEAKLTVPRDGRKRFKG 128 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + E ++ F+ RLI Sbjct: 129 VLTAVEGERVTILVDAAPE----AFPLSFDFEEAEKVRLI 164 >gi|34223734|sp|P72687|RIMP_SYNY3 RecName: Full=Ribosome maturation factor rimP Length = 151 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 9/145 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 + DI ++ QP+ E++ K +L+I + + +L DCE S++ Sbjct: 5 VIPDILALAQPIAEDLGLEVTDAVFQTNKRPPVLRIDIRNLQQDTSLNDCEAFSRSFEAQ 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 L+ ++I Y LEVSSPGI + + DF+ + G V + + G + G Sbjct: 65 LEESSLIASAYVLEVSSPGISPYLATERDFIAFKGFEVVVTSDNPHQGQSQWQGSLQGRD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISF 164 +L R +AI Sbjct: 125 GEAVYLSIRGR--------TVAIPL 141 >gi|217033305|ref|ZP_03438736.1| hypothetical protein HP9810_9g58 [Helicobacter pylori 98-10] gi|216944246|gb|EEC23671.1| hypothetical protein HP9810_9g58 [Helicobacter pylori 98-10] Length = 146 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 68/141 (48%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKKIEEKIEGVIESLGYLLYDVSLIKENEQHILRVSLKNPNGAVSLDICQQVSEIISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + I+ Y EVSS G++R + F G V ++ +K+ + + Sbjct: 61 LDVCDFIQDAYIFEVSSMGLERTLKTPKHFKLSLGEKVEVKLT----NKESFQAVLKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E E K + + Sbjct: 117 DLSADFELEDHAIKSVEYKDL 137 >gi|86609688|ref|YP_478450.1| hypothetical protein CYB_2246 [Synechococcus sp. JA-2-3B'a(2-13)] gi|123501415|sp|Q2JJI0|RIMP_SYNJB RecName: Full=Ribosome maturation factor rimP gi|86558230|gb|ABD03187.1| conserved hypothetical protein [Synechococcus sp. JA-2-3B'a(2-13)] Length = 156 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 39/160 (24%), Positives = 73/160 (45%), Gaps = 13/160 (8%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVE--RDDGNMTLRDCEELSQAIS 77 L + S+ +P+ ++ ++ VQ+ ++ +L++ + D + DCE +SQA+ Sbjct: 5 LIPQLESLARPLAAQLGYQLVQMVFHTNQHPPVLRVDIRPLDPDRETSHADCEAMSQALE 64 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD ++I G Y LEVSSPGI + DF+ + G V + K G ++G Sbjct: 65 VELDRVDLIPGQYVLEVSSPGISNLLTSDRDFVVFKGFAVEVTLDPPYKGKAVWSGHLLG 124 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 E L + R ++ + S+ R+ ++ E Sbjct: 125 RDEERVALSLKGR--------RVQLPRASVQ--RVALSSE 154 >gi|227904179|ref|ZP_04021984.1| protein of hypothetical function DUF150 [Lactobacillus acidophilus ATCC 4796] gi|227868198|gb|EEJ75619.1| protein of hypothetical function DUF150 [Lactobacillus acidophilus ATCC 4796] Length = 172 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 74/162 (45%), Gaps = 11/162 (6%) Query: 20 GLAGDISSVIQPVIE----EMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQ 74 + ++++PV+E E V + ++EK+ L+I+V+R+ + + + LS+ Sbjct: 13 NFLSKVVNLVRPVVESIIDEHGDMLVNMEYIKEKSQNYLRIYVDREPNGIDIDEIAVLSE 72 Query: 75 AISPILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 IS LD + + Y LE+SSPG +RP+ K+D+ + + + DK+ Sbjct: 73 LISEKLDTLDPDPLPDPYVLELSSPGAERPIKTKADWEKALNDYIHVGLYQKIEDKKMYE 132 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G + ++ LE + + + + + + + R + Sbjct: 133 GTLKSYNDDEIILEVKDKTRRK----TLTVPRKLIANIRFAI 170 >gi|239907794|ref|YP_002954535.1| hypothetical protein DMR_31580 [Desulfovibrio magneticus RS-1] gi|239797660|dbj|BAH76649.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 189 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 69/168 (41%), Gaps = 13/168 (7%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVE-------RDDG-NMT 65 + +A + +I P + + L + L++++++ + +T Sbjct: 1 MLQKNAVADAVRDLIAPYAATLGLAVWGVELASAGHRQLVRLYLDLAADTPRTPERLGVT 60 Query: 66 LRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS 125 + +C +S+ + +L+V+ I Y LEVSSPG+ R L + G + ++ + Sbjct: 61 IDECARVSRHLGALLEVDEIFHNPYVLEVSSPGLSRRFFEAGQLLAYVGREIEAKLAVPR 120 Query: 126 GDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 +++ G + G S+ + + + E I+ F RLI Sbjct: 121 EGRKRFKGILSGVSDQTVSMTVDPGAK----EFSISFDFAEADKIRLI 164 >gi|317013844|gb|ADU81280.1| Ribosome maturation factor rimP [Helicobacter pylori Gambia94/24] Length = 146 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 70/141 (49%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKRIEEKIEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEVISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + I+ Y LEVSS G++R + F G V +++ +K+ + + Sbjct: 61 LDVCDFIQDAYTLEVSSMGLERTLKIPKHFKLSLGEKVEVKLI----NKESFQAVLKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E E K + + Sbjct: 117 DLSADFELEDHAIKSVEYKDL 137 >gi|212696552|ref|ZP_03304680.1| hypothetical protein ANHYDRO_01090 [Anaerococcus hydrogenalis DSM 7454] gi|212676488|gb|EEB36095.1| hypothetical protein ANHYDRO_01090 [Anaerococcus hydrogenalis DSM 7454] Length = 146 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 38/151 (25%), Positives = 72/151 (47%), Gaps = 10/151 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 M L + ++ I + + V I + E N +L+ F+ + DG +T+ DCE+ S +S Sbjct: 1 MDLISKLKENLESDINNLGYELVDIEFVTEGNNKILRFFIYK-DGGITIDDCEKTSNLLS 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD ++I+ Y LEVSSP + RP+ D R ++ ++ + +K + I Sbjct: 60 ERLDEIDLIKSFYYLEVSSPDLSRPLKTDRDLERNKDELLEVKLK----NGEKFLANIEE 115 Query: 138 TSETGFFL----EKEKRGEKDMNELQIAISF 164 E E+++ + ++ ++I I F Sbjct: 116 IKENSLVFKCEDEQKEVDKNEIKTIKIEIVF 146 >gi|207723238|ref|YP_002253637.1| hypothetical protein RSMK00472 [Ralstonia solanacearum MolK2] gi|206588434|emb|CAQ35397.1| conserved hypothetical protein [Ralstonia solanacearum MolK2] Length = 144 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 10/135 (7%) Query: 43 ISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRP 102 + + LL++++++ + + + DCE++S ++ + +VEN+ + RLEVSSPG+DRP Sbjct: 1 MEVERAPAGLLRVYIDQAETGIVIEDCEKVSHQLTRVFEVENV--HYERLEVSSPGLDRP 58 Query: 103 MVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE----TGFFLEKEKRGEKDMNEL 158 + +DF R+ G V + L ++ G + + LE E + Sbjct: 59 LRTLTDFTRFAGQEVKVTLRLPVEGQKNFTGIVQAPTGEPGQERIGLEFEGKD----GPA 114 Query: 159 QIAISFDSLLSARLI 173 + + L ARL+ Sbjct: 115 LLEFTLSELDRARLV 129 >gi|261416679|ref|YP_003250362.1| protein of unknown function DUF150 [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373135|gb|ACX75880.1| protein of unknown function DUF150 [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326580|gb|ADL25781.1| conserved hypothetical protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 150 Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 78/158 (49%), Gaps = 13/158 (8%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQI-SLLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M ++S+I + S V+ K L+IF+++ +G +T+ DC +S +S Sbjct: 1 MVAQEKLNSLIADACKSASVTLVEADVFRAGKRKTLRIFIDKPEG-VTIDDCTNVSHFLS 59 Query: 78 PILDVE-NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 LD++ +IEG Y LEVSSPGIDRP+ +DF R G ++ + + G+++ Sbjct: 60 DALDLDPELIEGAYTLEVSSPGIDRPLKSMADFERNKGRLLRVTRST----GKPVTGELL 115 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E L+ + N +I I +LSA++ V Sbjct: 116 NADEENLTLKLKG------NAGEIVIPRSEVLSAKVEV 147 >gi|207109808|ref|ZP_03243970.1| hypothetical protein HpylH_11664 [Helicobacter pylori HPKX_438_CA4C1] Length = 143 Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 68/134 (50%), Gaps = 5/134 (3%) Query: 28 VIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 +++ VIE + + +SL++E +L++ ++ +G ++L C+++S+ ISP+LDV + I Sbjct: 5 LLEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPLLDVCDFI 64 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE 146 + Y LEVSS G++R + F G V ++ +K+ + ++ E Sbjct: 65 QDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLT----NKESFQAVLKDANDLSADFE 120 Query: 147 KEKRGEKDMNELQI 160 E K + + Sbjct: 121 LEDHAVKSVEYKDL 134 >gi|288574933|ref|ZP_06393290.1| protein of unknown function DUF150 [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570674|gb|EFC92231.1| protein of unknown function DUF150 [Dethiosulfovibrio peptidovorans DSM 11002] Length = 181 Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 32/150 (21%), Positives = 77/150 (51%), Gaps = 12/150 (8%) Query: 26 SSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDV-- 82 I+ ++E + + + + + +E ++++++ G +++RDCE +S+ I+ L+ Sbjct: 8 KEEIREIVESLGYEFIGLEVKKESAASFVRVYMDSL-GGISVRDCEIVSRRINNWLEESG 66 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E++++ Y LEVSSPG++RP+ DF R++G + + ++++ G + + + Sbjct: 67 EDLLDDRYYLEVSSPGLERPLFSLDDFRRFSGKEASIRLNELVEGRRRINGIVSVSQDGS 126 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +E + + +LSA+L Sbjct: 127 IRVENQDGA--------FEFPLEMILSAKL 148 >gi|296135766|ref|YP_003643008.1| protein of unknown function DUF150 [Thiomonas intermedia K12] gi|295795888|gb|ADG30678.1| protein of unknown function DUF150 [Thiomonas intermedia K12] Length = 191 Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 64/118 (54%), Gaps = 5/118 (4%) Query: 26 SSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDG-NMTLRDCEELSQAISPILDVEN 84 + I + + V++ L LL++ ++ DG +T+ DCE +++ + + +VEN Sbjct: 4 AQAIDTAVTSLGLELVEVEHLPRG--LLRVTIDHADGAPVTVEDCERVTRQLQYVFEVEN 61 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 + + RLEVSSPG+DRP+ + DF+R+ G + + + ++K G ++ S+ Sbjct: 62 V--DYGRLEVSSPGLDRPLRKAEDFVRFAGLEIDVVLRVPFQGRKKYRGVLLERSQDD 117 >gi|332638632|ref|ZP_08417495.1| ribosome maturation protein RimP [Weissella cibaria KACC 11862] Length = 228 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 73/163 (44%), Gaps = 7/163 (4%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISP 78 + + +V+ P + + F + ++ +++L++ V+R DG + + D L++ I Sbjct: 3 NVVETVQAVLAPELADQGFDLWDVIYEKQGSDMVLRVLVDRLDGAINMDDLVMLTETIGE 62 Query: 79 ILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 +D + Y ++VSSPG +R + R D+ + + + + G+++ Sbjct: 63 RMDQIEPDPFPEAYLMDVSSPGAERELKRPQDYEWALEKYIHVALNQEVDGENEFDGELL 122 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELL 179 ++ L +G++ +I + ++ A L ++ E + Sbjct: 123 AVTDDMLTLAITVKGKRK----RIDVPRTAIKQANLTISQERI 161 Score = 57.0 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 7/72 (9%) Query: 100 DRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQ 159 +R + DF +V K+ G++ S+ + E E Sbjct: 159 ERILTTPEDFDWAMNKMVRVSTYQKIDGKKDFAGELTAVSDEALTITLED-------ETA 211 Query: 160 IAISFDSLLSAR 171 + + D++ AR Sbjct: 212 VDVPRDAIAQAR 223 >gi|139436992|ref|ZP_01771152.1| Hypothetical protein COLAER_00126 [Collinsella aerofaciens ATCC 25986] gi|133776639|gb|EBA40459.1| Hypothetical protein COLAER_00126 [Collinsella aerofaciens ATCC 25986] Length = 170 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 10/159 (6%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDG-NMTLRDCEELSQAISPI 79 I ++ V + V + L+ K +++ +E +G +++L D ++ + + Sbjct: 13 EQAIIDALEAVAPQHDIDIVDVELVGATKAPCVRVRIEGAEGQSLSLNDVTANTKWVGDV 72 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 ++ + I Y LEVSSPG+ RP+ R SDF R+ G ++ ++K GKI + Sbjct: 73 IEELDPISSSYTLEVSSPGMARPLRRPSDFARFVGENCEL-TSTATEGRRKYAGKIASAT 131 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDEL 178 ET LE E + + F + +L T + Sbjct: 132 ETSVTLELED-------GESVTLDFSDVKKCKLKPTYDF 163 >gi|294339929|emb|CAZ88292.1| conserved hypothetical protein [Thiomonas sp. 3As] Length = 191 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 64/118 (54%), Gaps = 5/118 (4%) Query: 26 SSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDG-NMTLRDCEELSQAISPILDVEN 84 + I + + V++ L LL++ ++ DG +T+ DCE +++ + + +VEN Sbjct: 4 AQAIDTAVTSLGLELVEVEHLPRG--LLRVTIDHADGAPVTVEDCERVTRQLQYVFEVEN 61 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 + + RLEVSSPG+DRP+ + DF+R+ G + + + ++K G ++ S+ Sbjct: 62 V--DYGRLEVSSPGLDRPLRKSEDFVRFAGLEIDVVLRVPFQGRKKYRGVLLERSQDD 117 >gi|284992352|ref|YP_003410906.1| hypothetical protein Gobs_3968 [Geodermatophilus obscurus DSM 43160] gi|284065597|gb|ADB76535.1| protein of unknown function DUF150 [Geodermatophilus obscurus DSM 43160] Length = 196 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 39/160 (24%), Positives = 79/160 (49%), Gaps = 8/160 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 +A ++ ++ PV+E + ++ + + ++++ V+RD G +TL D E+S+A+S Sbjct: 10 VATRMAGLVAPVVEAAGYDLEELVVTPAGRRSIVRVVVDRDAG-VTLDDVAEVSRAVSTA 68 Query: 80 LDVEN--IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LEV+SPG+DRP+ + R G +V + G +++ +++ Sbjct: 69 LDEHDGEFGSAPYVLEVTSPGVDRPLTEPRHWRRNTGRLVTVAVGR-EGSSEQVTARVLE 127 Query: 138 TSETGFFLEKEKRGE---KDMNELQIAISFDSLLSARLIV 174 G L E +G+ K + + + L + R+ V Sbjct: 128 VDGDGVTLAVEAKGKPGAKKRPPTRRQVPWQELGAGRVQV 167 >gi|145589411|ref|YP_001156008.1| hypothetical protein Pnuc_1229 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|226696286|sp|A4SY80|RIMP_POLSQ RecName: Full=Ribosome maturation factor rimP gi|145047817|gb|ABP34444.1| protein of unknown function DUF150 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 163 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 46/157 (29%), Positives = 79/157 (50%), Gaps = 16/157 (10%) Query: 26 SSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDD--GNMTLRDCEELSQAISPILDVE 83 +I +E + + V+I E LL++ +E D +++ DCE++S +S L VE Sbjct: 4 QQIIAAELENLGYTLVEIE--REAGGLLRVTIENPDYERLISVLDCEKVSHQLSYALPVE 61 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT----- 138 NI + RLE+SSPG+DRP+ +DF R+ G V ++ +++G+++ G + G Sbjct: 62 NI--PYERLEISSPGLDRPVKSAADFERFTGMEVDLKLRVAAGNRKNFRGVLQGLLSGEL 119 Query: 139 --SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + F L E D E Q+ S + RL+ Sbjct: 120 NSPDAKFGLLFEGA---DGAESQLEFSLAEVDKTRLV 153 >gi|283955315|ref|ZP_06372815.1| hypothetical protein C414_000440054 [Campylobacter jejuni subsp. jejuni 414] gi|283793229|gb|EFC31998.1| hypothetical protein C414_000440054 [Campylobacter jejuni subsp. jejuni 414] Length = 147 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 17/153 (11%) Query: 29 IQPVIEEMSFRSVQISLLEEKNL-LLQIFVERD---DG---NMTLRDCEELSQAISPILD 81 ++ + +E + L E + ++FV + G + L DC LS+ +SPI D Sbjct: 3 LEALCKEANLELYDSELTSENGKKIYRVFVMKPLDEKGQRVGVNLDDCARLSEILSPIFD 62 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE + G Y LEVSSPG++R + + F + G +V +K+K+ KIM + Sbjct: 63 VEPPVNGEYFLEVSSPGLERKLGKIEHFAKSIGELVKITT----NEKEKIEAKIMSVEDE 118 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 LE + EK + F + AR + Sbjct: 119 NIILENLENQEKT------TLKFSDIKKARTFI 145 >gi|317057641|ref|YP_004106108.1| hypothetical protein Rumal_3009 [Ruminococcus albus 7] gi|315449910|gb|ADU23474.1| protein of unknown function DUF150 [Ruminococcus albus 7] Length = 181 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 65/150 (43%), Gaps = 3/150 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ + QP+ +E+ + +E L++ +++ DG +T+ DCE ++ + ILD Sbjct: 17 VAGLAQPLADELGLFLWDVRFEKEGATWYLRVLIDK-DGGVTMEDCENFTRPFNKILDEA 75 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS-GDKQKLIGKIMGTSETG 142 + I Y E SPG+ R + + F G VV ++ +++ I ++G E Sbjct: 76 DPIPQSYVFECGSPGLGRELRKPIHFEVCIGDVVRVRLIRPDENGEREFIVGLVGYDEEE 135 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + E + + + +L Sbjct: 136 KLIACQTLDENGDGAANVQFNLNDCAFVKL 165 >gi|332528892|ref|ZP_08404862.1| hypothetical protein HGR_03237 [Hylemonella gracilis ATCC 19624] gi|332041649|gb|EGI78005.1| hypothetical protein HGR_03237 [Hylemonella gracilis ATCC 19624] Length = 202 Score = 124 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 76/182 (41%), Gaps = 37/182 (20%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD------DGNMTLRDCEELSQAISP 78 + + + + + + V+I LL+I ++ + + + DCE++++ + Sbjct: 12 LQEIAEQTVTGLGYELVEIE--RSAGGLLRITIDLPWTPGLHEQFVNVEDCEKVTRQLQY 69 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS------------- 125 +L+VE I + RLEVSSPGIDRP+ + DF R+ G V+ + Sbjct: 70 VLEVEGI--EYKRLEVSSPGIDRPLRHEQDFERFAGQVIDVTLKAPIGAAALAGQDAAGG 127 Query: 126 ---GDKQKLIGKIMGTSETGFFL-----------EKEKRGEKDMNELQIAISFDSLLSAR 171 +++K G + + G+ + ++ + + + + D L AR Sbjct: 128 KVAANRKKFRGTLEKAPQGGWQIVWSDEPAPKPGQRVSKKREPAPLQALGFTLDELRDAR 187 Query: 172 LI 173 L Sbjct: 188 LA 189 >gi|222823265|ref|YP_002574838.1| conserved hypothetical protein (DUF150 domain protein) [Campylobacter lari RM2100] gi|254801701|sp|B9KEV2|RIMP_CAMLR RecName: Full=Ribosome maturation factor rimP gi|222538486|gb|ACM63587.1| conserved hypothetical protein (DUF150 domain protein) [Campylobacter lari RM2100] Length = 140 Score = 124 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 12/147 (8%) Query: 29 IQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 ++ + +E L+ E + +++V+++ G + L DC LS+ +SPI DVE + Sbjct: 3 LEALCKEAGLSFYDDELVSENGKKIYRVYVQKE-GGVKLDDCARLSEILSPIFDVEPPVS 61 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 G Y LEVSS G++R + + F + +V +K+K+ KI+ + LE Sbjct: 62 GEYFLEVSSCGLERKLSKIEHFAKSINELVKITTS----EKEKIEAKIVSVDDENITLEN 117 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 K EK + F + AR V Sbjct: 118 LKTQEKT------TLKFSDIRKARTFV 138 >gi|91788289|ref|YP_549241.1| hypothetical protein Bpro_2424 [Polaromonas sp. JS666] gi|123164890|sp|Q12AU9|RIMP_POLSJ RecName: Full=Ribosome maturation factor rimP gi|91697514|gb|ABE44343.1| protein of unknown function DUF150 [Polaromonas sp. JS666] Length = 200 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 70/180 (38%), Gaps = 35/180 (19%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD-----DGNMTLRDCEELSQAISPI 79 + I+ + + + V+I LL++ ++ + + DCE++++ + + Sbjct: 3 LQETIEQTVTGLGYELVEIE--RTGGGLLRVTIDMPYVSGAEQFINAEDCEKVTRQLQFV 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS-----------GDK 128 L+VE + RLEVSSPGIDRP+ + DF R+ G +V + ++ Sbjct: 61 LEVEG--ADYSRLEVSSPGIDRPLRNEKDFERFAGELVDITLKAPIGVAASAGSAVSANR 118 Query: 129 QKLIGKIM------GTSETGFFLEKEKRGEKDMNELQIAIS---------FDSLLSARLI 173 +K G + G + E + + + D + ARL Sbjct: 119 KKFRGTLERAAPKDGVAGWQIVWSDEPPVKPGQKVSKKKLPAPLQALGFTLDEIHQARLA 178 >gi|294815428|ref|ZP_06774071.1| Conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|326443781|ref|ZP_08218515.1| ribosome maturation protein RimP [Streptomyces clavuligerus ATCC 27064] gi|294328027|gb|EFG09670.1| Conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] Length = 165 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 9/153 (5%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + +++P++ +I L + L+I V+ +DG TL C ELS+AIS L Sbjct: 6 SERLRELLEPLVTAAGLDLEEIELARAGRRRQLRIVVDSEDGA-TLDACAELSRAISQKL 64 Query: 81 DVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 D + + E Y LEVSSPG DRP+ ++R G +V + D +L+ +++ Sbjct: 65 DESDAMGEDEYVLEVSSPGADRPLTEHRHYVRATGRLVKLHL----ADGGELVARVLTVD 120 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + G LE + ++ F + AR+ Sbjct: 121 DEGLDLEVPGVKGRKPTARRVT--FADIAKARV 151 >gi|160913531|ref|ZP_02076222.1| hypothetical protein EUBDOL_00007 [Eubacterium dolichum DSM 3991] gi|158434083|gb|EDP12372.1| hypothetical protein EUBDOL_00007 [Eubacterium dolichum DSM 3991] Length = 181 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 6/157 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M I ++ V+ + ++ +E KN +LQI + R DG M + C E+S+ IS Sbjct: 28 MEHNEKIKQLVSDVLGD-ELVLYDVAWHQEGKNKILQIAIMRKDGTMDIDTCAEVSEKIS 86 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD E+ I+ Y LEV SPG +R + G V ++ + G ++ Sbjct: 87 AKLDEEDFIQSEYFLEVCSPGAERELKTYEQIKDAIGEFVYVKLKDPKAGMCDVKGTLLS 146 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E ++ + K E++IA ++ RL V Sbjct: 147 CEENSILIQYMDKAVKKKAEIEIA----NIALIRLSV 179 >gi|225874865|ref|YP_002756324.1| hypothetical protein ACP_3325 [Acidobacterium capsulatum ATCC 51196] gi|259585657|sp|C1F695|RIMP_ACIC5 RecName: Full=Ribosome maturation factor rimP gi|225792684|gb|ACO32774.1| conserved hypothetical protein [Acidobacterium capsulatum ATCC 51196] Length = 201 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 44/191 (23%), Positives = 72/191 (37%), Gaps = 42/191 (21%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERD----------------------- 60 I S Q V V + K+ +L+IF+E++ Sbjct: 8 IRSAAQRVASSHGLDVVDVEYQGGAKHRMLRIFIEKNAEERAKLAAQSSGRVETIEVHEE 67 Query: 61 ---DG-------NMTLRDCEELSQAISPILDVENIIEGH--YRLEVSSPGIDRPMVRKSD 108 +G +T DC S +LDVE ++ G Y LEVSSPG+DR + ++D Sbjct: 68 MPREGMNPEHFSGVTHEDCSAFSTDFGTLLDVEELMPGASEYTLEVSSPGLDRKLQSRAD 127 Query: 109 FLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKE------KRGEKDMNELQIAI 162 + R+ G +V + G++ G L+ K EK + I Sbjct: 128 YERFAGSLVKLSTFEPVNGNRHWQGRMAGLDGDTLRLDLTAMKQKGKGKEKKSAAETVEI 187 Query: 163 SFDSLLSARLI 173 + ++ A+LI Sbjct: 188 ALGNVEKAQLI 198 >gi|120612039|ref|YP_971717.1| hypothetical protein Aave_3385 [Acidovorax citrulli AAC00-1] gi|226703802|sp|A1TSK5|RIMP_ACIAC RecName: Full=Ribosome maturation factor rimP gi|120590503|gb|ABM33943.1| protein of unknown function DUF150 [Acidovorax citrulli AAC00-1] Length = 202 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 76/187 (40%), Gaps = 42/187 (22%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD------------------DGNMTL 66 + +++ + + + V+I LL+I ++ + +T+ Sbjct: 3 LQQIVEQTVAGLGYDLVEIE--RSAGGLLRITIDLPWQPPVEGAASDAAAPAGPEAFVTV 60 Query: 67 RDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 DCE++++ + L+V+ + + RLEVSSPGIDRP+ + DF R+ G V+ + G Sbjct: 61 EDCEKVTRQLQFALEVDGV--DYKRLEVSSPGIDRPLRHEQDFQRFAGEVIDITLKAPIG 118 Query: 127 D---------KQKLIGKIMGTSETGFFL-----------EKEKRGEKDMNELQIAISFDS 166 D ++K G + G+ + +K + + + D Sbjct: 119 DAAAGQVNANRKKFRGTLERAETGGWQIVWSDEPPPKPGQKVSKKRVPAPLQALGFTLDE 178 Query: 167 LLSARLI 173 L ARL Sbjct: 179 LRDARLA 185 >gi|149926273|ref|ZP_01914535.1| hypothetical protein LMED105_02033 [Limnobacter sp. MED105] gi|149825091|gb|EDM84303.1| hypothetical protein LMED105_02033 [Limnobacter sp. MED105] Length = 171 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 70/142 (49%), Gaps = 6/142 (4%) Query: 32 VIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYR 91 VI + I E N LL+I ++ G +T+ DCE++S ++ + VEN+ + R Sbjct: 31 VISSLGLEVADIE--REGNGLLRIMIDSPTG-VTVEDCEKVSHQLTHLFTVENV--NYER 85 Query: 92 LEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRG 151 LE+SSPG+DR + RK DF R+ V+ + + ++++ G + E + + G Sbjct: 86 LEISSPGVDRVLRRKKDFERFLDQEVSLKFKRAINNQKQFKGVLQKGKEQAWGVLVTPDG 145 Query: 152 EKDMNELQIAISFDSLLSARLI 173 K+ + L ARL+ Sbjct: 146 -KNAEPYLLDFEITDLAGARLV 166 >gi|171463769|ref|YP_001797882.1| protein of unknown function DUF150 [Polynucleobacter necessarius subsp. necessarius STIR1] gi|226696205|sp|B1XV91|RIMP_POLNS RecName: Full=Ribosome maturation factor rimP gi|171193307|gb|ACB44268.1| protein of unknown function DUF150 [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 163 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 47/157 (29%), Positives = 79/157 (50%), Gaps = 16/157 (10%) Query: 26 SSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDD--GNMTLRDCEELSQAISPILDVE 83 VI +E + + V+I E LL++ +E D +T+ DCE++S +S L VE Sbjct: 4 QQVISAELENLGYSLVEIE--REAGGLLRVTIENPDYERLITVLDCEKVSHQLSYTLPVE 61 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT----- 138 NI + RLE+SSPG+DRP+ +DF R+ G V ++ +++G+++ G++ G Sbjct: 62 NI--PYERLEISSPGLDRPVKSAADFQRFAGMEVDLKLRVAAGNRKNFRGELQGLLSGEL 119 Query: 139 --SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + F L E D Q+ S + RL+ Sbjct: 120 NSPDAKFGLVFEGA---DGQSSQLEFSLAEVDKTRLV 153 >gi|328885405|emb|CCA58644.1| conserved hypothetical protein [Streptomyces venezuelae ATCC 10712] Length = 168 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 45/153 (29%), Positives = 79/153 (51%), Gaps = 6/153 (3%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + +++P++ + +I + LL+I V+ D+G + L C ELS+AIS L Sbjct: 6 SDRLRGLVEPLVAAKNLDLEEIEVSRAGRRGLLRIVVDSDEG-VELDACAELSRAISEKL 64 Query: 81 DVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 D + + EG Y LEVSSPG DRP+ + ++R G +V ++ S G ++L+ +I+ Sbjct: 65 DETDAMGEGEYVLEVSSPGADRPLTQHRHYVRATGRLVKLQL-SSDGAAEELVARIVAVD 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 E G LE + ++ F + AR+ Sbjct: 124 EDGLDLEVPGVKGRKPTARRVE--FADVAKARV 154 >gi|260221429|emb|CBA29983.1| UPF0090 protein Daci_2988 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 199 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 77/184 (41%), Gaps = 39/184 (21%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD-----------DGNMTLRDCEELS 73 + +++ + + + V+I LL+I ++ + + + DCE+++ Sbjct: 3 LQEIVEQTVAGLGYDLVEIE--RSAGGLLRITIDLPWVAPVEGQPVSEQFVNVEDCEKVT 60 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG------- 126 + + L+V+ + + RLEVSSPGIDRP+ DF R+ GHV+ + G Sbjct: 61 RQLQFALEVDGV--EYKRLEVSSPGIDRPLRHTQDFERFAGHVIDITLKAPMGAAANGQV 118 Query: 127 --DKQKLIGKIMGT----SETGFFL-----------EKEKRGEKDMNELQIAISFDSLLS 169 +++K G + TG+ + +K + + +FD L Sbjct: 119 SANRKKFRGTLERVPAADGSTGWQIVWSDAPEVKPGQKVSKKRVPPPLQALGFAFDELRD 178 Query: 170 ARLI 173 ARL Sbjct: 179 ARLA 182 >gi|160898429|ref|YP_001564011.1| hypothetical protein Daci_2988 [Delftia acidovorans SPH-1] gi|226703492|sp|A9C1Z0|RIMP_DELAS RecName: Full=Ribosome maturation factor rimP gi|160364013|gb|ABX35626.1| protein of unknown function DUF150 [Delftia acidovorans SPH-1] Length = 192 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 77/181 (42%), Gaps = 36/181 (19%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD-----DGN-------MTLRDCEEL 72 + +++ + + + V+I LL++ ++ +G +T+ DCE++ Sbjct: 3 LQQIVEQTVTGLGYDLVEIE--RSAGGLLRVTIDLPWQPPVEGGPVVPEQFVTVEDCEKI 60 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG------ 126 ++ + L+V+ + RLEVSSPGIDRP+ + DF R+ G V+ + G Sbjct: 61 TRQLQFALEVDG--ADYTRLEVSSPGIDRPLRHEQDFTRFVGEVIDLTLKEPIGAAAEGQ 118 Query: 127 ---DKQKLIGKIMGTSETGFFL-----------EKEKRGEKDMNELQIAISFDSLLSARL 172 +++K G + + G+ + +K + + + + L ARL Sbjct: 119 VSANRKKFRGTLERAEDGGWQIVWSDEPPVKPGQKVSKKRVPAPLQALGFTLEELREARL 178 Query: 173 I 173 Sbjct: 179 A 179 >gi|88597399|ref|ZP_01100634.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni 84-25] gi|88190460|gb|EAQ94434.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni 84-25] Length = 147 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 17/153 (11%) Query: 29 IQPVIEEMSFRSVQISLLEEKNL-LLQIFVERD------DGNMTLRDCEELSQAISPILD 81 ++ + +E++ L E + +++V + + L DC LS+ +SPI D Sbjct: 3 LEALCKEVNLELYDSELTSENGKKIYRVYVMKPLDEKGERRGVNLDDCARLSEILSPIFD 62 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE + G Y LEVSS G++R + + F + +V G+K+K+ KI+ + Sbjct: 63 VEPPVSGEYFLEVSSAGLERKLSKIEHFAKSINELVKITT----GEKEKIEAKIISVEDE 118 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 LE + EK I+F+ + AR + Sbjct: 119 NITLENLENKEKT------TINFNDIKKARTFI 145 >gi|118474205|ref|YP_892625.1| hypothetical protein CFF8240_1491 [Campylobacter fetus subsp. fetus 82-40] gi|261885775|ref|ZP_06009814.1| hypothetical protein CfetvA_11986 [Campylobacter fetus subsp. venerealis str. Azul-94] gi|259585736|sp|A0RQZ2|RIMP_CAMFF RecName: Full=Ribosome maturation factor rimP gi|118413431|gb|ABK81851.1| hypothetical protein CFF8240_1491 [Campylobacter fetus subsp. fetus 82-40] Length = 140 Score = 124 bits (311), Expect = 9e-27, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 68/141 (48%), Gaps = 13/141 (9%) Query: 32 VIEEMSFRSVQISLLEEKNLLL-QIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHY 90 ++ + ++ E ++ ++++ + +G ++L +CE +S+ +SPI DV + G + Sbjct: 7 LVSQCGVDLYDAEVVNENGRVIYRVYITK-NGGVSLEECEAVSKLLSPIYDVMPPVSGEW 65 Query: 91 RLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKR 150 LEVSSPG++R + + F G + DK ++ GKI+ + + + Sbjct: 66 ILEVSSPGLERKLSKIEHFTLSIGEFAKIIL----NDKTEIKGKIVSVKDDNICINIK-- 119 Query: 151 GEKDMNELQIAISFDSLLSAR 171 N I + F+++ A+ Sbjct: 120 -----NNESIEVKFENIKKAK 135 >gi|315452832|ref|YP_004073102.1| ribosome maturation factor rimP [Helicobacter felis ATCC 49179] gi|315131884|emb|CBY82512.1| ribosome maturation factor rimP [Helicobacter felis ATCC 49179] Length = 156 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 71/153 (46%), Gaps = 13/153 (8%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPIL 80 + ++++ ++ + ++ L+E +L+I ++ +G +L C+E S ISP+L Sbjct: 3 TSQLETLLENTLQSIGCALYDVAFLKENQTDILRISIKALEGPTSLDVCQEASLLISPLL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DV I G Y LEVSS G++R + ++ F G ++ C+I+ D +L G + Sbjct: 63 DVHAPIAGSYTLEVSSMGLERTLSKRRHFELSIGELIECKIL----DNTRLRGTLEALEG 118 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L E + ++ + A+ I Sbjct: 119 ENILLNIEGTTQ--------SLPLAQIKRAKTI 143 >gi|307297717|ref|ZP_07577523.1| protein of unknown function DUF150 [Thermotogales bacterium mesG1.Ag.4.2] gi|306916977|gb|EFN47359.1| protein of unknown function DUF150 [Thermotogales bacterium mesG1.Ag.4.2] Length = 177 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 68/156 (43%), Gaps = 7/156 (4%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 L ++ + V + + + L K L++I +++ DG +++ DCE S Sbjct: 28 DLKKELFELANEVASNLGYSIYDLGLGRRGKKRLVKITIDKLDGYVSISDCESFSADFGR 87 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LD +++ Y L V SPG++R + D++R+ G + LIGKI+ Sbjct: 88 ALDSADLVPFSYDLVVESPGLERALRDLKDYVRFTGEKAKVILKEPIEGVSVLIGKIISC 147 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + G+ +IA F ++ A L + Sbjct: 148 ENDVVTVESSENGK------EIAFHFSNVKRANLKL 177 >gi|152993548|ref|YP_001359269.1| hypothetical protein SUN_1969 [Sulfurovum sp. NBC37-1] gi|166980517|sp|A6QBQ3|RIMP_SULNB RecName: Full=Ribosome maturation factor rimP gi|151425409|dbj|BAF72912.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 142 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 6/129 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + + I ++E I E + ++ + + G + L C +S +SP LDV Sbjct: 3 LEAQISKIVEANGAALYDIETANEFDETIYRVLITK-TGGVNLDLCATISNELSPFLDVH 61 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + GHYRLEVSSPGI+R + + F G V +++ KL G + + G Sbjct: 62 PPMNGHYRLEVSSPGIERKLSKPIHFQNAIGEKVKVKLL----GGDKLKGVLKAADDKGI 117 Query: 144 FLEKEKRGE 152 +E ++ E Sbjct: 118 TVETKQGEE 126 >gi|22536560|ref|NP_687411.1| hypothetical protein SAG0377 [Streptococcus agalactiae 2603V/R] gi|76786908|ref|YP_329097.1| hypothetical protein SAK_0451 [Streptococcus agalactiae A909] gi|76798054|ref|ZP_00780311.1| UPF0090 protein SP0552 (SP14.3) [Streptococcus agalactiae 18RS21] gi|77406351|ref|ZP_00783413.1| conserved hypotehtical protein [Streptococcus agalactiae H36B] gi|77408760|ref|ZP_00785490.1| conserved hypotehtical protein [Streptococcus agalactiae COH1] gi|77411665|ref|ZP_00788005.1| conserved hypotehtical protein [Streptococcus agalactiae CJB111] gi|77414448|ref|ZP_00790599.1| conserved hypotehtical protein [Streptococcus agalactiae 515] gi|91208361|sp|Q3K306|RIMP_STRA1 RecName: Full=Ribosome maturation factor rimP gi|22533394|gb|AAM99283.1|AE014208_23 conserved hypothetical protein [Streptococcus agalactiae 2603V/R] gi|76561965|gb|ABA44549.1| conserved hypothetical protein [Streptococcus agalactiae A909] gi|76586613|gb|EAO63114.1| UPF0090 protein SP0552 (SP14.3) [Streptococcus agalactiae 18RS21] gi|77159493|gb|EAO70653.1| conserved hypotehtical protein [Streptococcus agalactiae 515] gi|77162309|gb|EAO73280.1| conserved hypotehtical protein [Streptococcus agalactiae CJB111] gi|77172605|gb|EAO75744.1| conserved hypotehtical protein [Streptococcus agalactiae COH1] gi|77175020|gb|EAO77827.1| conserved hypotehtical protein [Streptococcus agalactiae H36B] Length = 127 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 7/129 (5%) Query: 48 EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE--NIIEGHYRLEVSSPGIDRPMVR 105 + +L I +++ G +T+ D +L+ +SP+LD + Y LEVSSPG++RP+ Sbjct: 2 GGDYVLSILIDKP-GGITVEDTAQLTDVVSPLLDTIQPDPFPEQYMLEVSSPGLERPLKT 60 Query: 106 KSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFD 165 G + + S + G ++ ++ + + I + Sbjct: 61 AEALSNAVGSYINVSLYKSIDKVKIFEGDLLSFDGETLTIDYMDKTRHK----TVDIPYQ 116 Query: 166 SLLSARLIV 174 ++ ARL V Sbjct: 117 TVAKARLAV 125 >gi|239944686|ref|ZP_04696623.1| hypothetical protein SrosN15_27072 [Streptomyces roseosporus NRRL 15998] gi|239991149|ref|ZP_04711813.1| hypothetical protein SrosN1_27849 [Streptomyces roseosporus NRRL 11379] gi|291448147|ref|ZP_06587537.1| UPF0090 protein [Streptomyces roseosporus NRRL 15998] gi|291351094|gb|EFE77998.1| UPF0090 protein [Streptomyces roseosporus NRRL 15998] Length = 167 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 7/153 (4%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + +++P++ +I + +L++ V+ D+G + L C ELS+AIS L Sbjct: 6 SERLRGLLEPLVSAQELDLEEIEVSRAGRRGVLRVIVDSDEG-VELDACAELSRAISQKL 64 Query: 81 DVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 D + + EG Y LEVSSPG DRP+ ++R G + + +L+ +I+ Sbjct: 65 DETDAMGEGEYVLEVSSPGADRPLTEHRHYVRATGRLARFHLTG--DGSGELVARILAVD 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 E G LE G K ++FD + AR+ Sbjct: 123 EDGLDLEV--PGVKGRKPTARRLAFDEIAKARV 153 >gi|312865482|ref|ZP_07725709.1| conserved hypothetical protein [Streptococcus downei F0415] gi|311099000|gb|EFQ57217.1| conserved hypothetical protein [Streptococcus downei F0415] Length = 134 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 8/136 (5%) Query: 42 QISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE--NIIEGHYRLEVSSPG 98 + + + +L I V++ +G +T+ D EL+ ISP+LD + Y LE+SSPG Sbjct: 2 DVEYEKLGADYVLSILVDKPEG-ITVDDTAELTDIISPLLDTIKPDPFPSQYMLEISSPG 60 Query: 99 IDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNEL 158 ++RP+ G + + + + G ++ LE + K Sbjct: 61 LERPLKTAESLEAAIGSYINVSLYKAIDKVKVFEGDLLDFDGQTLTLEYLDKTRKK---- 116 Query: 159 QIAISFDSLLSARLIV 174 Q+ I + ++ AR+ V Sbjct: 117 QVEIPYSTVAKARMAV 132 >gi|224438171|ref|ZP_03659106.1| hypothetical protein HcinC1_09335 [Helicobacter cinaedi CCUG 18818] gi|313144616|ref|ZP_07806809.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] gi|313129647|gb|EFR47264.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] Length = 156 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 82/164 (50%), Gaps = 23/164 (14%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVER----------DDGNMTLRDC 69 L+ + I+ + +S I L+E + +L+I + + D ++L+DC Sbjct: 2 LSAQTTQKIERLAASLSLYIYDIDFLKEDERHILRISITKKAPMQNLSSKDSNAVSLQDC 61 Query: 70 EELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ 129 + LS+ +SP+LDVE+I +Y LEVSSPG+DR + + + G +++ +++ DK Sbjct: 62 QILSELLSPLLDVEHINMDNYHLEVSSPGLDRILKKPQHYAFSLGEMISLKLI----DKS 117 Query: 130 KLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L G + ++T L +K I I F S+ A++I Sbjct: 118 SLQGILENVNDTEIALLVDKEK--------INIPFSSIKKAKVI 153 >gi|257784635|ref|YP_003179852.1| hypothetical protein Apar_0832 [Atopobium parvulum DSM 20469] gi|257473142|gb|ACV51261.1| protein of unknown function DUF150 [Atopobium parvulum DSM 20469] Length = 164 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 9/164 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGN---MTLRDCEE 71 + G+ I S ++ V + ++ KN L+++ ++ DD ++L + + Sbjct: 1 MQNEGVTQKILSALEQAALNHHIDIVDVEIVGSSKNPLVRVRIDHDDETEETISLDEVAQ 60 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 + IS +D + + LEVSSPG+ RP+ R DF+R+ G V + ++ ++K Sbjct: 61 ETSWISETIDELDPFPASFTLEVSSPGMARPLRRAKDFVRFAGQEVQLQTT-ATEGRRKF 119 Query: 132 IGKIMGTSETGFFLEKEKR----GEKDMNELQIAISFDSLLSAR 171 G ++G T ++ E ++ + I +FD L SA+ Sbjct: 120 TGTLLGIEGTTISIQTEDEVCTIDLSELKKCVIKPAFDFLTSAK 163 >gi|218282330|ref|ZP_03488620.1| hypothetical protein EUBIFOR_01202 [Eubacterium biforme DSM 3989] gi|218216703|gb|EEC90241.1| hypothetical protein EUBIFOR_01202 [Eubacterium biforme DSM 3989] Length = 173 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 65/154 (42%), Gaps = 8/154 (5%) Query: 23 GDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 ++ I+ V+ E + + + LL++ VE++DG M L C S I +LD Sbjct: 23 DNLKEWIEEVLNENGCHLYDLEWITNQGTPLLRVSVEKEDGTMDLDTCASCSDVIGQMLD 82 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 ++ Y LEV SPG +R + + R G V ++ ++IG ++ +E Sbjct: 83 EKDWYSHEYMLEVCSPGAERELRTDEEVQRAVGKYVFVKMKDPKQGLDQVIGDLVEATEN 142 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + + +I I ++ LI+T Sbjct: 143 DVTISYRDKTRTK----KITIEKSNIQ---LIMT 169 >gi|221195857|ref|ZP_03568910.1| conserved hypothetical protein [Atopobium rimae ATCC 49626] gi|221184331|gb|EEE16725.1| conserved hypothetical protein [Atopobium rimae ATCC 49626] Length = 164 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 39/160 (24%), Positives = 73/160 (45%), Gaps = 13/160 (8%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVER--DDG-NMTLRDCEELSQA 75 G I SV++ V + ++ K ++++ ++ +DG ++L + + Sbjct: 5 GSVERIISVLEERALGHDIDIVDVEVVGSAKAPVVRVRIDHADEDGKTISLDEVAAETGW 64 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 IS LD ++ G + LEVSSPG+DRP+ R DF R++G V+ + + +++ GK+ Sbjct: 65 ISDALDEIDVFPGSFTLEVSSPGMDRPLRRVRDFERFSGSQVSLQTT-ALEGRRRYTGKL 123 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +G E LE + + I + L T Sbjct: 124 LGIQENIVSLESDG--------MTYDIPLTEIKKCTLKPT 155 >gi|295426317|ref|ZP_06818976.1| protein of hypothetical function DUF150 [Lactobacillus amylolyticus DSM 11664] gi|295063990|gb|EFG54939.1| protein of hypothetical function DUF150 [Lactobacillus amylolyticus DSM 11664] Length = 159 Score = 122 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 70/158 (44%), Gaps = 8/158 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDD-GNMTLRDCEELSQAISP 78 + I S I+P+I++ V I ++EK L+I+V++D G + + + LS+ +S Sbjct: 4 ITDLIRSEIEPIIDQRGDEFVDIEYVKEKGQNYLRIYVDKDQLGGIDINEIAYLSELVSE 63 Query: 79 ILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 LD + + Y L +SSPG + P+ D+ + G V + K+ G + Sbjct: 64 KLDSLDPDPLPDPYVLGLSSPGAEHPIKSAKDWTKARGEYVHVGLYQKIDGKKIYEGTLK 123 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 S+ LE + + + + I + + R + Sbjct: 124 SYSDEEIELEIKIKTRRK----TLNIPRKLIANIRFAI 157 >gi|121594901|ref|YP_986797.1| hypothetical protein Ajs_2563 [Acidovorax sp. JS42] gi|120606981|gb|ABM42721.1| protein of unknown function DUF150 [Acidovorax sp. JS42] Length = 219 Score = 122 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 74/183 (40%), Gaps = 38/183 (20%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVE--------------RDDGNMTLRDCE 70 + +++ + + + V+I LL+I ++ + +T+ DCE Sbjct: 25 LQQIVEQTVAGLGYDLVEIE--RSAGGLLRITIDLVWVPPTDEVSAAVGAEQFITVEDCE 82 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG---- 126 ++++ + L+VE + + RLEVSSPGIDR + ++DF R+ G V+ + G Sbjct: 83 KVTRQLQFALEVEGV--DYTRLEVSSPGIDRLLRNEADFKRFEGEVIDITLKQPMGAAAG 140 Query: 127 -----DKQKLIGKIMGTSETGFFLEKEK-----------RGEKDMNELQIAISFDSLLSA 170 +++K G + G+ + + + + D L A Sbjct: 141 GQVHANRKKFRGALERADSGGWQIVWSDEPPVKPGQRISKKRVPAPLQALGFTLDELREA 200 Query: 171 RLI 173 RL Sbjct: 201 RLA 203 >gi|239982634|ref|ZP_04705158.1| hypothetical protein SalbJ_24601 [Streptomyces albus J1074] gi|291454475|ref|ZP_06593865.1| UPF0090 protein [Streptomyces albus J1074] gi|291357424|gb|EFE84326.1| UPF0090 protein [Streptomyces albus J1074] Length = 174 Score = 122 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 75/156 (48%), Gaps = 6/156 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 L+ + +I+P++ ++++ K +L++ V+ DDG + L C +LS+ +S Sbjct: 3 TTLSDRLRELIEPLVSSQELDLEEVTVTPAGKRRVLRVVVDSDDG-VQLDTCADLSRTVS 61 Query: 78 PILDVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 LD +++ E Y LEV+SPG DRP+ F+R G +V + ++L+ +I Sbjct: 62 ARLDETDLMGESEYVLEVTSPGADRPLSEYRHFVRATGRLVKFHLT-PDAGAEELVARIE 120 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 E G LE G K Q + + AR+ Sbjct: 121 AVDEEGLDLEV--PGVKGRKPKQRRLPLKDVARARV 154 >gi|303248241|ref|ZP_07334504.1| protein of unknown function DUF150 [Desulfovibrio fructosovorans JJ] gi|302490379|gb|EFL50290.1| protein of unknown function DUF150 [Desulfovibrio fructosovorans JJ] Length = 180 Score = 122 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 62/160 (38%), Gaps = 13/160 (8%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDD--------GNMTLRDCEELS 73 I +I P + + L + L++++++ D +T+ +C +S Sbjct: 9 EKIRELISPFLTAKGLAVWGVELAASGHRQLVRLYLDLADDVVRTPERRGVTIDECATVS 68 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 + + +L++E++ G Y LEVSSPG R + G + ++ +++ G Sbjct: 69 RHLGTLLEMEDLFHGPYVLEVSSPGFGRRFFSADQLPAYIGEAIEAKLAAPRDGRKRFRG 128 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 K+ + + ++ FD RLI Sbjct: 129 KLSAVDGSRVTMTVN----PGPQAFSLSFEFDEADKVRLI 164 >gi|300312900|ref|YP_003776992.1| hypothetical protein Hsero_3606 [Herbaspirillum seropedicae SmR1] gi|300075685|gb|ADJ65084.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 164 Score = 122 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 71/160 (44%), Gaps = 17/160 (10%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVE-------RDDGNMTLRDCEELSQAI 76 + +I+ + + + V + L+++F++ + ++T+ DCE+ + + Sbjct: 2 QLLELIESTLSGLGYELV--EFEKAPRGLVRVFIDFPFDPEAEEARSITVEDCEKATHQL 59 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD---KQKLIG 133 + VEN++ RLEVSSPG+DRP+ + SDF+R+ ++ + ++ G Sbjct: 60 LHVFTVENVLYE--RLEVSSPGLDRPLKKFSDFVRFVDCEAVIKLRVPLPGTSNRKTYEG 117 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + LE E D + + + + A L+ Sbjct: 118 VLREPEGEELVLEFEAN---DGSAAVLNFTLADVDKAHLV 154 >gi|254423906|ref|ZP_05037624.1| conserved hypothetical protein [Synechococcus sp. PCC 7335] gi|196191395|gb|EDX86359.1| conserved hypothetical protein [Synechococcus sp. PCC 7335] Length = 154 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 2/135 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERD-DGNMTLRDCEELSQAISP 78 L + + PV + + V + +L++ V + L DCE LS A++ Sbjct: 5 LIPQVLELAAPVADRVGLEIVDAVFQTNQSPPVLRLDVRNPTQEDTGLNDCERLSIALTE 64 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LD N+I Y LEVSSPG+ + DF + G V + KQ G ++G Sbjct: 65 ALDESNLIPDAYVLEVSSPGVSDVLSSDRDFKVFKGFPVEVRLSEPYKSKQIWRGSLIGR 124 Query: 139 SETGFFLEKEKRGEK 153 + L + R K Sbjct: 125 DDDKLTLNLKGRPVK 139 >gi|33596481|ref|NP_884124.1| hypothetical protein BPP1860 [Bordetella parapertussis 12822] gi|51316795|sp|Q7W9A7|RIMP_BORPA RecName: Full=Ribosome maturation factor rimP gi|33566250|emb|CAE37161.1| conserved hypothetical protein [Bordetella parapertussis] Length = 168 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 77/161 (47%), Gaps = 16/161 (9%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 D+ ++ + + M V + LL++ ++R DG + + DCE++S+ +S + +V Sbjct: 2 ADLFALTEEALAGMDIELVDVE--RAAMGLLRVTIDRVDG-VRIEDCEQVSRQLSHVYEV 58 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 ENI + RLEV SPG+DRP+ +++F R+ G + ++ + ++ G + G Sbjct: 59 ENI--DYKRLEVGSPGVDRPLRNEAEFRRFAGERIEIKLREALDGRKVFSGTLRAPEADG 116 Query: 143 FFLEKEKRG-----------EKDMNELQIAISFDSLLSARL 172 + + G K + ++ + D + A+L Sbjct: 117 ASGQDDTAGAGKAVFGLEFEAKKNDIQVLSFTLDDIERAKL 157 >gi|332283700|ref|YP_004415611.1| hypothetical protein PT7_0447 [Pusillimonas sp. T7-7] gi|330427653|gb|AEC18987.1| hypothetical protein PT7_0447 [Pusillimonas sp. T7-7] Length = 164 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 47/159 (29%), Positives = 82/159 (51%), Gaps = 16/159 (10%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 DI ++ Q I M V + LL++ ++R +G + + DCE++S+ +S + +V Sbjct: 2 ADIFALTQEAIAGMDVELVDVE--RAPLGLLRVTIDRAEG-VRIEDCEQVSKHLSRVFEV 58 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET- 141 ENI + RLEV SPGIDRP+ R +DF+R+ V ++ + +++ G + SE Sbjct: 59 ENI--DYKRLEVGSPGIDRPLKRVADFIRFANERVEIKLREAIDNRKVYAGVLR-VSENV 115 Query: 142 --------GFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 F LE E K+ ++ + +FD + A+L Sbjct: 116 ASDPSANPVFGLELEPTSRKEPAQV-LDFAFDDVDRAKL 153 >gi|293400741|ref|ZP_06644886.1| putative SP14.3 protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305767|gb|EFE47011.1| putative SP14.3 protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 155 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 68/157 (43%), Gaps = 5/157 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M I +I+P++ + +S +E KN +LQ+ + R DG+M + C +S+ IS Sbjct: 1 MDGLSKIKELIKPLLAQEDIELYDVSWQQEGKNRILQVAIMRKDGSMDIDTCAAMSEKIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD ++I Y LEV SPG +R + ++ V ++ + G + Sbjct: 61 EKLDEVDMIASEYFLEVCSPGAERELKDETQIQDALDEYVYVKLKNPKAGMDAVKGYLRA 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + K +I I D++ RL V Sbjct: 121 YENGDITMEYMDKAVKK----KITIDGDNIALIRLSV 153 >gi|152990172|ref|YP_001355894.1| hypothetical protein NIS_0423 [Nitratiruptor sp. SB155-2] gi|167012920|sp|A6Q228|RIMP_NITSB RecName: Full=Ribosome maturation factor rimP gi|151422033|dbj|BAF69537.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2] Length = 142 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 18/156 (11%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLL-QIFVERDDGNMTLRDCEELSQAIS 77 M L +I ++E + I + ++ + ++ + +G + L+ C E+S IS Sbjct: 1 MSLEQEIKQ----IVESCGAKLYDIETVSDRGKTIYRVTITAPEG-VDLQKCVEISNLIS 55 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 P+LDV + G Y LEVSSPG++R + + S F G V D + + G + Sbjct: 56 PLLDVHPPVSGDYNLEVSSPGVERKLKKPSHFEHSVGEKVRVT----KNDGETIEGVLSD 111 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + L+ + I I D + A+ I Sbjct: 112 FRDHTLTLQTKNG--------PIEIPLDQITYAKTI 139 >gi|218960601|ref|YP_001740376.1| hypothetical protein CLOAM0262 [Candidatus Cloacamonas acidaminovorans] gi|167729258|emb|CAO80169.1| conserved hypothetical protein [Candidatus Cloacamonas acidaminovorans] Length = 156 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 71/152 (46%), Gaps = 11/152 (7%) Query: 23 GDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + + + + +EM I + K ++ +++ + G +TL +C S A+ L+ Sbjct: 6 AQVEEIARKICQEMHLAVYDIEEKMSGKGRIITVYLTK-IGGVTLDECAAFSNALGKELE 64 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + ++I Y LEVSSPG++RP+ KS ++ VA + + +++ ++G + ++ Sbjct: 65 IFDLIPERYFLEVSSPGLERPLKLKSHYVSAINEKVAVQ-FQAGEERKSIMGTLTEVNQD 123 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 ++ I F S++ A+ + Sbjct: 124 TIVIDDRGSVT--------EIPFKSIIRAKTV 147 >gi|124002856|ref|ZP_01687708.1| 15 kDa protein [Microscilla marina ATCC 23134] gi|123992084|gb|EAY31471.1| 15 kDa protein [Microscilla marina ATCC 23134] Length = 152 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 80/158 (50%), Gaps = 9/158 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQAIS 77 M ++++I+ +E + + + L +K L + ++ D G +++ C LS+ + Sbjct: 1 MNQEEKLTTLIKEHLEP-EYFLIDVILKNQKPKAKLTVLIDGDQG-VSIDRCATLSRWLG 58 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++ EN+IEG Y LEVSSPG+D P+ + +++ G V + G + G + Sbjct: 59 KYIEEENLIEGAYTLEVSSPGVDLPLKNQRQYIKNIGRKVKVSLNE--GGNK--TGVLEK 114 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + ++ EK+G+ + + I FD ++ +++++ Sbjct: 115 VEDKLIVIQPEKKGKIIPEKEE--IPFDQIMKTKVMIS 150 >gi|328479977|gb|EGF49014.1| hypothetical protein AAULR_12702 [Lactobacillus rhamnosus MTCC 5462] Length = 119 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 7/122 (5%) Query: 55 IFVERDDGNMTLRDCEELSQAISPILDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRW 112 +++++ G +TL +C +S+A+S LD + I Y LEVSSPG +RP+ R++D+ + Sbjct: 1 VYIDK-SGGITLDECVLVSEALSEQLDAINPDPIPQQYFLEVSSPGAERPLKRETDYEQA 59 Query: 113 NGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G + + K+ G + L + + K I + SARL Sbjct: 60 IGDYIHVSLFKKLDGKKVFEGTLKDLKPDQLTLTVKDKSRKFDQ----VIDRKLIASARL 115 Query: 173 IV 174 + Sbjct: 116 AI 117 >gi|58337538|ref|YP_194123.1| hypothetical protein LBA1260 [Lactobacillus acidophilus NCFM] gi|75357528|sp|Q5FJN2|RIMP_LACAC RecName: Full=Ribosome maturation factor rimP gi|58254855|gb|AAV43092.1| hypothetical protein LBA1260 [Lactobacillus acidophilus NCFM] Length = 158 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 72/153 (47%), Gaps = 7/153 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILD-- 81 + V++ +I+E V + ++EK+ L+I+V+R+ + + + LS+ IS LD Sbjct: 8 VRPVVESIIDEHGDMLVNMEYIKEKSQNYLRIYVDREPNGIDIDEIAVLSELISEKLDTL 67 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + + Y LE+SSPG +RP+ K+D+ + + + DK+ G + ++ Sbjct: 68 DPDPLPDPYVLELSSPGAERPIKTKADWEKALNDYIHVGLYQKIEDKKMYEGTLKSYNDD 127 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 LE + + + + + + + R + Sbjct: 128 EIILEVKDKTRRK----TLTVPRKLIANIRFAI 156 >gi|268678891|ref|YP_003303322.1| hypothetical protein Sdel_0250 [Sulfurospirillum deleyianum DSM 6946] gi|268616922|gb|ACZ11287.1| protein of unknown function DUF150 [Sulfurospirillum deleyianum DSM 6946] Length = 142 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 14/147 (9%) Query: 26 SSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + + +IE ++ E + +I++ +G + L C E+S+ +SPI DVE Sbjct: 4 TEQLIKIIESCGVSLYDTEVVSEFDKKIFRIYITSKEG-INLDKCAEVSRILSPIFDVEP 62 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 +EG Y EVSSPGI+R +++ F G V ++ +K+K IG + G + Sbjct: 63 PLEGEYLFEVSSPGIERKLLKPEHFSVSVGEKVKIKLK----NKEKFIGILEGFANNTLQ 118 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSAR 171 + E + I+ D + AR Sbjct: 119 VRVENEVK--------EIALDDIEKAR 137 >gi|33592373|ref|NP_880017.1| hypothetical protein BP1245 [Bordetella pertussis Tohama I] gi|33602224|ref|NP_889784.1| hypothetical protein BB3248 [Bordetella bronchiseptica RB50] gi|51316792|sp|Q7VYR4|RIMP_BORPE RecName: Full=Ribosome maturation factor rimP gi|51316959|sp|Q7WHG0|RIMP_BORBR RecName: Full=Ribosome maturation factor rimP gi|33572018|emb|CAE41541.1| conserved hypothetical protein [Bordetella pertussis Tohama I] gi|33576662|emb|CAE33740.1| conserved hypothetical protein [Bordetella bronchiseptica RB50] gi|332381789|gb|AEE66636.1| hypothetical protein BPTD_1235 [Bordetella pertussis CS] Length = 168 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 77/161 (47%), Gaps = 16/161 (9%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 D+ ++ + + M V + LL++ ++R DG + + DCE++S+ +S + +V Sbjct: 2 ADLFALTEEALAGMDIELVDVE--RAAMGLLRVTIDRVDG-VRIEDCEQVSRQLSRVYEV 58 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 ENI + RLEV SPG+DRP+ +++F R+ G + ++ + ++ G + G Sbjct: 59 ENI--DYKRLEVGSPGVDRPLRNEAEFRRFAGERIEIKLREALDGRKVFSGTLRAPEADG 116 Query: 143 FFLEKEKRG-----------EKDMNELQIAISFDSLLSARL 172 + + G K + ++ + D + A+L Sbjct: 117 ASGQDDTAGAGKAVFGLEFEAKKNDIQVLSFTLDDIERAKL 157 >gi|282861438|ref|ZP_06270503.1| protein of unknown function DUF150 [Streptomyces sp. ACTE] gi|282564096|gb|EFB69633.1| protein of unknown function DUF150 [Streptomyces sp. ACTE] Length = 165 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 76/153 (49%), Gaps = 9/153 (5%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + +++P++ +I + + +L++ V+ DDG + L C ELS+ IS L Sbjct: 6 SDRLRGLLEPLVSAKELDLEEIEVSRAGRRRVLRVIVDSDDG-VELDTCAELSRTISETL 64 Query: 81 DVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 D + + EG Y LEVSSPG DRP+ ++R G + + D +L+ +I+G Sbjct: 65 DATDAMGEGEYVLEVSSPGADRPLTEHRHYVRATGRLAKLNL----ADGGELVARILGVD 120 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + G LE + ++A FD + AR+ Sbjct: 121 DEGLDLEVPGVKGRKPTARRVA--FDEIAKARV 151 >gi|145593915|ref|YP_001158212.1| hypothetical protein Strop_1367 [Salinispora tropica CNB-440] gi|259586196|sp|A4X4N4|RIMP_SALTO RecName: Full=Ribosome maturation factor rimP gi|145303252|gb|ABP53834.1| protein of unknown function DUF150 [Salinispora tropica CNB-440] Length = 220 Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 67/133 (50%), Gaps = 8/133 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + V++PV+ E + ++S+ + ++Q+ V+ DG + L ++S+A+S LD Sbjct: 40 ARLHEVVEPVVGEAGYDLEELSISRAGRRHVVQVIVD-ADGGIDLDAVADVSRAVSAALD 98 Query: 82 VE-----NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV-LSSGDKQKLIGKI 135 +I+ G Y+LEVSSPG+ RP+ + R G +V + ++L G++ Sbjct: 99 AAEEARGDIVAGEYQLEVSSPGVSRPLTLPRHWRRNAGRLVRVTVRGGPDAGDRQLTGRV 158 Query: 136 MGTSETGFFLEKE 148 + + LE + Sbjct: 159 VEADDEQVVLETD 171 >gi|182435607|ref|YP_001823326.1| hypothetical protein SGR_1814 [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776241|ref|ZP_08235506.1| Ribosome maturation factor rimP [Streptomyces cf. griseus XylebKG-1] gi|226695980|sp|B1VYN8|RIMP_STRGG RecName: Full=Ribosome maturation factor rimP gi|178464123|dbj|BAG18643.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326656574|gb|EGE41420.1| Ribosome maturation factor rimP [Streptomyces cf. griseus XylebKG-1] Length = 167 Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 7/153 (4%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + +++P++ +I + +L+I V+ ++G + L C ELS+AIS L Sbjct: 6 SERLRGLLEPLVSAQQLDLEEIEVSRAGRRGVLRIIVDSEEG-VELDACAELSRAISEKL 64 Query: 81 DVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 D + + EG Y LEVSSPG DRP+ ++R G + + + +L+ +I+ Sbjct: 65 DETDAMGEGEYVLEVSSPGADRPLTEHRHYVRATGRLARFHL--AGDGSGELVARILAVD 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 E G LE G K ++FD + AR+ Sbjct: 123 EEGLDLEV--PGVKGRKPTARRLAFDEIARARV 153 >gi|319744371|gb|EFV96731.1| hypothetical protein containing DUF150 [Streptococcus agalactiae ATCC 13813] Length = 127 Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 7/129 (5%) Query: 48 EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE--NIIEGHYRLEVSSPGIDRPMVR 105 + +L I +++ G +T+ D +L+ +SP+LD + Y LEVSSPG++RP+ Sbjct: 2 GGDYVLSILIDKP-GGITVEDTVQLTDVVSPLLDTIQPDPFPEQYMLEVSSPGLERPLKT 60 Query: 106 KSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFD 165 G + + S + G ++ ++ + + I + Sbjct: 61 AEALSNAVGSYINVSLYKSIDKVKIFEGDLLSFDGETLTIDYMDKTRHK----TVDIPYQ 116 Query: 166 SLLSARLIV 174 ++ ARL V Sbjct: 117 TVAKARLAV 125 >gi|86605174|ref|YP_473937.1| hypothetical protein CYA_0456 [Synechococcus sp. JA-3-3Ab] gi|123507667|sp|Q2JX22|RIMP_SYNJA RecName: Full=Ribosome maturation factor rimP gi|86553716|gb|ABC98674.1| conserved hypothetical protein [Synechococcus sp. JA-3-3Ab] Length = 157 Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 72/158 (45%), Gaps = 13/158 (8%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVE--RDDGNMTLRDCEELSQAIS 77 L + S+ +P+ + + VQ+ + +L++ + + + DCE +SQA+ Sbjct: 5 LIPQLESLARPLAARLGYELVQMVFHTNQYPPVLRVDIRPLDPEQETSHADCEAMSQALE 64 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD ++I GHY LEVSSPGI ++ DF+ + G V + K G ++G Sbjct: 65 VELDRVDLIPGHYVLEVSSPGISNLLISDRDFVVFKGFAVEVTVDPPYKGKAVWSGHLLG 124 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 E L + R ++ + S+ R++++ Sbjct: 125 RDEEKVALSLKGR--------RVQLPRASVQ--RVVLS 152 >gi|208434347|ref|YP_002266013.1| hypothetical protein HPG27_382 [Helicobacter pylori G27] gi|208432276|gb|ACI27147.1| hypothetical protein HPG27_382 [Helicobacter pylori G27] Length = 135 Score = 121 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 64/129 (49%), Gaps = 5/129 (3%) Query: 33 IEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYR 91 IE + + +SL++E +L++ ++ +G ++L C+++S+ ISP+LDV + I+ Y Sbjct: 2 IESLGYLLYDVSLVKENEQHILRVSLKNPNGAVSLDICQQVSEIISPLLDVCDFIQDAYI 61 Query: 92 LEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRG 151 LEVSS G++R + F G V ++ +K+ + ++ E E Sbjct: 62 LEVSSMGLERTLKTPKHFKLSLGEKVEVKLT----NKESFQAVLKDANDLSADFELEDHA 117 Query: 152 EKDMNELQI 160 K + + Sbjct: 118 IKSVEYKDL 126 >gi|57168691|ref|ZP_00367823.1| conserved hypothetical protein [Campylobacter coli RM2228] gi|305432680|ref|ZP_07401841.1| conserved hypothetical protein [Campylobacter coli JV20] gi|57019972|gb|EAL56652.1| conserved hypothetical protein [Campylobacter coli RM2228] gi|304444391|gb|EFM37043.1| conserved hypothetical protein [Campylobacter coli JV20] Length = 147 Score = 121 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 17/153 (11%) Query: 29 IQPVIEEMSFRSVQISLLEEKNL-LLQIFVERD------DGNMTLRDCEELSQAISPILD 81 ++ + +E++ L E + +++V + + L DC LS+ +SPI D Sbjct: 3 LEALCKEVNLELYDSELTSENGKKIYRVYVMKPLDEKGERRGVNLDDCARLSEILSPIFD 62 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE + G Y LEVSS G++R + + F + +V G+K+K+ KI+ + Sbjct: 63 VEPPVSGEYFLEVSSAGLERKLSKIEHFAKSINELVKITT----GEKEKIEAKIISVEDE 118 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 LE + EK + F + AR + Sbjct: 119 NITLENLENQEKT------TLKFSDIKKARTFI 145 >gi|313681591|ref|YP_004059329.1| hypothetical protein Sulku_0462 [Sulfuricurvum kujiense DSM 16994] gi|313154451|gb|ADR33129.1| protein of unknown function DUF150 [Sulfuricurvum kujiense DSM 16994] Length = 143 Score = 121 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 65/154 (42%), Gaps = 17/154 (11%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQI-SLLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M L DI + +E + E +N + ++ V G ++L C E + IS Sbjct: 1 MSLESDIKKM----VESIGLSLYDTAVFNENENTIFRVSVTAP-GGVSLDQCVEATHLIS 55 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 P+LDV + G YRLEVSSPGI+R + F + G V V +K+K G+++ Sbjct: 56 PLLDVTPPVGGEYRLEVSSPGIERKLKTLDHFAQSVGEKVVFSTV----NKEKFDGEVVS 111 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 + K + F S+ A+ Sbjct: 112 VENEEITI-------KTKEGETHTVPFRSISKAK 138 >gi|195977580|ref|YP_002122824.1| hypothetical protein Sez_0439 [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|259586200|sp|B4U1E4|RIMP_STREM RecName: Full=Ribosome maturation factor rimP gi|195974285|gb|ACG61811.1| hypothetical protein Sez_0439 [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 127 Score = 121 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 7/129 (5%) Query: 48 EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE--NIIEGHYRLEVSSPGIDRPMVR 105 + +L I V++ G +T+ D EL++ ISP+LD + Y LEVSSPG++RP+ Sbjct: 2 GSDYVLSILVDKASG-ITVEDTAELTELISPLLDTISPDPFPDQYMLEVSSPGLERPLKT 60 Query: 106 KSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFD 165 G + + + + G ++ ++ + + I + Sbjct: 61 AESLKAAVGSYINVSLYRAIDKVKVFQGDLVAFDGDILTIDYLDKTRHK----TVEIPYQ 116 Query: 166 SLLSARLIV 174 ++ ARL V Sbjct: 117 AVAKARLAV 125 >gi|238063379|ref|ZP_04608088.1| hypothetical protein MCAG_04345 [Micromonospora sp. ATCC 39149] gi|237885190|gb|EEP74018.1| hypothetical protein MCAG_04345 [Micromonospora sp. ATCC 39149] Length = 232 Score = 121 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 38/168 (22%), Positives = 77/168 (45%), Gaps = 23/168 (13%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +VI+PV+ + +S+ + ++++ V+ DG + L ++S+A+S LD Sbjct: 41 ARLHAVIEPVVNAAGYDLEDVSVSRAGRRHVVRVIVD-ADGGINLDAVADVSRAVSAALD 99 Query: 82 VE-----NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI-----------VLSS 125 +I+ G Y+LEVSSPG+DRP+ + R G +V + Sbjct: 100 AAEEAGGDILAGEYQLEVSSPGVDRPLTLPRHWRRNVGRLVKVTARAVAPGPRAGDRQPT 159 Query: 126 GDKQKLIGKIMGTSETGFFLEKE----KRGEKDMNELQIAISFDSLLS 169 GD+Q + G+++ + LE + + ++ ++ + F L Sbjct: 160 GDRQ-VTGRVVEADDERVVLETDSGRVEFSHAELGPGRVQVEFHRLDE 206 >gi|56752081|ref|YP_172782.1| hypothetical protein syc2072_d [Synechococcus elongatus PCC 6301] gi|81300832|ref|YP_401040.1| hypothetical protein Synpcc7942_2023 [Synechococcus elongatus PCC 7942] gi|81561540|sp|Q5N0A8|RIMP_SYNP6 RecName: Full=Ribosome maturation factor rimP gi|123556488|sp|Q31LL6|RIMP_SYNE7 RecName: Full=Ribosome maturation factor rimP gi|56687040|dbj|BAD80262.1| hypothetical protein [Synechococcus elongatus PCC 6301] gi|81169713|gb|ABB58053.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942] Length = 153 Score = 121 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L I + +P+ +++ VQ + +L++ + G+ L DCE +S++ Sbjct: 5 LIPAILDLARPIADDLDLEVVQAVFHTNQSPPILRLDIRSRVGDTGLEDCERMSRSFELA 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD NII Y LE+SSPG+ + DFL + G V + D + G ++G Sbjct: 65 LDEANIIPDAYVLEISSPGLSDTLESDRDFLSFKGFPVQVTSRSPNDDTVEQQGTLLGRD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 +L K R + I+ +L +LI Sbjct: 125 ADSVYLNKRGR--------TVRIARSQVLEVKLI 150 >gi|313901627|ref|ZP_07835064.1| protein of unknown function DUF150 [Thermaerobacter subterraneus DSM 13965] gi|313468108|gb|EFR63585.1| protein of unknown function DUF150 [Thermaerobacter subterraneus DSM 13965] Length = 153 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 66/155 (42%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 + ++ + +P+ E+ + + E LQ V+R+ G +T+ +C S+A+ P+ Sbjct: 6 VEAAVAQLAEPLAEQRGLVLLDVEYRREGGRWFLQCVVDRE-GGVTMDECAAFSEALDPV 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 L+ + + +EV SPG+DR + +F + G V +++ G++ G Sbjct: 65 LEGVDGLAEDVVVEVMSPGLDRTLRNDREFAWFRGREVEVTTYRPVDGRRRFQGRLEGLE 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + E I D++ +L V Sbjct: 125 DGHVVV--------AGREGIHRIPRDAVAKTQLQV 151 >gi|257066113|ref|YP_003152369.1| hypothetical protein Apre_0606 [Anaerococcus prevotii DSM 20548] gi|256797993|gb|ACV28648.1| protein of unknown function DUF150 [Anaerococcus prevotii DSM 20548] Length = 147 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 11/152 (7%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 M L + + + IE + + V I +KN +L F+ DG +T+ DCE++S + Sbjct: 1 MDLTKRLKEIFEADIENLGYELVDIEFKGQKNNKILTFFIYNKDG-ITIEDCEKVSAFLD 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD +II+ Y LEVSS + RP+ D R ++ ++ D + +GKI+ Sbjct: 60 EKLDEIDIIKDSYYLEVSSQDLSRPIKTDRDLERNKDELLKIKLK----DGEIFLGKIIN 115 Query: 138 TSET--GFFLEKEKR---GEKDMNELQIAISF 164 E F LE E ++D+ E+ I I F Sbjct: 116 IGEDFYEFILEDENTKNIKKEDVKEIYIEIVF 147 >gi|317402908|gb|EFV83449.1| hypothetical protein HMPREF0005_01713 [Achromobacter xylosoxidans C54] Length = 175 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 21/163 (12%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 D+ ++ + + M V + LL++ ++R G + + DCE++S+ +S + +V Sbjct: 10 ADLFALTEEALAGMDVELVDVE--RAALGLLRVTIDRV-GGVRIEDCEQVSRQLSRVYEV 66 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE-- 140 ENI + RLEV SPGIDRP+ +++F R+ G + ++ + ++ G + + Sbjct: 67 ENI--DYKRLEVGSPGIDRPLRNEAEFRRFAGERIEIKLREALDGRKVFSGTLTVPEDAP 124 Query: 141 -----------TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 T F LE E K + + D + A+L Sbjct: 125 AASDAVAGMHKTVFGLEFE---AKKNEIQVLNFTVDDIERAKL 164 >gi|229815166|ref|ZP_04445503.1| hypothetical protein COLINT_02212 [Collinsella intestinalis DSM 13280] gi|229809396|gb|EEP45161.1| hypothetical protein COLINT_02212 [Collinsella intestinalis DSM 13280] Length = 164 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 66/151 (43%), Gaps = 10/151 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDG-NMTLRDCEELSQAISP 78 + DI ++ E V + ++ K +++ +++ +G + L + + +S Sbjct: 6 VEQDIIDALEARAAEHGIDIVDVEVVGATKAPCVRVRLDKLEGDPINLDEVTAQTAWVSE 65 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 ++ + I Y LEVSSPG+ RP+ R SDF R+ G V + ++ G I Sbjct: 66 TVEALDPISSAYTLEVSSPGMKRPLRRPSDFARFVGEDVELTTT-AMEGRRSYKGAIAAA 124 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLS 169 ++ ++ E E + I+FD + Sbjct: 125 TDACVTIQPEG-------EDAVTIAFDDVKK 148 >gi|121604914|ref|YP_982243.1| hypothetical protein Pnap_2013 [Polaromonas naphthalenivorans CJ2] gi|226701127|sp|A1VNU4|RIMP_POLNA RecName: Full=Ribosome maturation factor rimP gi|120593883|gb|ABM37322.1| protein of unknown function DUF150 [Polaromonas naphthalenivorans CJ2] Length = 202 Score = 120 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 68/184 (36%), Gaps = 39/184 (21%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD---------DGNMTLRDCEELSQA 75 + I+ + + + V+I LL++ ++ + + DCE++++ Sbjct: 3 LQETIEQTVTGLGYELVEIERTSGG--LLRVTIDMPYLAGTAPGAEQFINAEDCEKVTRQ 60 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG--------- 126 + +L+VE + RLEVSSPGIDRP+ + DF R+ G ++ + G Sbjct: 61 LQFVLEVEG--AEYSRLEVSSPGIDRPLRSEKDFERFAGELIDITLKAPIGVAASAGSTV 118 Query: 127 --DKQKLIGKIMGTSETG------FFLEKEKRGEKDMNELQIAIS---------FDSLLS 169 ++K G + E + + I D + Sbjct: 119 SASRKKFRGTLERAEPVDGKPGWQIVWSDEPAVKPGQKISKKRIPAPLQALGFTLDEINQ 178 Query: 170 ARLI 173 ARL Sbjct: 179 ARLA 182 >gi|296272022|ref|YP_003654653.1| hypothetical protein Arnit_0482 [Arcobacter nitrofigilis DSM 7299] gi|296096197|gb|ADG92147.1| protein of unknown function DUF150 [Arcobacter nitrofigilis DSM 7299] Length = 142 Score = 120 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 14/147 (9%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + I+ ++ I +E + + +I++ DG ++L C E+S+ +SPILD Sbjct: 3 LEESIEMTVKGCGVELYDILTTKENDRDIFRIYITSKDG-VSLDKCAEISRLVSPILDTN 61 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + G Y LEVSSPGI+R + + + ++ G V + DK L G+++ E Sbjct: 62 EPMYGKYNLEVSSPGIERKLKKTAHYISSIGENVKVK----DFDKNVLKGELIFADENEI 117 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSA 170 + E + IS+D + SA Sbjct: 118 --------KVKTQEGEETISYDKISSA 136 >gi|332528134|ref|ZP_08404165.1| hypothetical protein RBXJA2T_19301 [Rubrivivax benzoatilyticus JA2] gi|332112705|gb|EGJ12498.1| hypothetical protein RBXJA2T_19301 [Rubrivivax benzoatilyticus JA2] Length = 194 Score = 120 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 77/153 (50%), Gaps = 16/153 (10%) Query: 29 IQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN--------MTLRDCEELSQAISPIL 80 I+ + +S+ V++ LL++ ++R G+ +T+ DCE +++ + +L Sbjct: 25 IERTVTGLSYDLVEVE--RAGRGLLRVTIDRVPGHAYPVEGEFVTVEDCEAVTRQLQYVL 82 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 +VEN+ + RLEVSSPG+DRP+ R +D+ R++G + + ++ G + Sbjct: 83 EVENV--DYERLEVSSPGLDRPLRRAADYERFSGQEIELTLRQPFQGRKHWKGLLGKGEG 140 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 G+ L + E +A S D + ARL+ Sbjct: 141 EGWNLVFQDGK----AEQVLAFSLDEVREARLV 169 >gi|328955635|ref|YP_004372968.1| protein of unknown function DUF150 [Coriobacterium glomerans PW2] gi|328455959|gb|AEB07153.1| protein of unknown function DUF150 [Coriobacterium glomerans PW2] Length = 167 Score = 120 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 72/170 (42%), Gaps = 11/170 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGN-MTLRDCEELS 73 L + ++ V + L K +++ +E+ DG+ ++L D + Sbjct: 1 MVKTKLEQRLIDALEAEASARDIDIVDVELTGATKAPCVRVRLEKADGSALSLDDVCAQN 60 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS--GDKQKL 131 +S +++ + + G Y LEVSSPG+ RP+ R DF R+ G + + + +L Sbjct: 61 CWVSAVVEDIDPVAGRYTLEVSSPGMARPLRRPRDFARFVGQTAQIGFIQTQGPDGRSRL 120 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRA 181 G I +E + + +A+ F+++ A L + + RA Sbjct: 121 TGLIQSANEDCVTIAPKD-------GEPLAVPFEAIKKATLKPSYDFGRA 163 >gi|154148890|ref|YP_001407189.1| hypothetical protein CHAB381_1677 [Campylobacter hominis ATCC BAA-381] gi|259585737|sp|A7I3U8|RIMP_CAMHC RecName: Full=Ribosome maturation factor rimP gi|153804899|gb|ABS51906.1| conserved hypothetical protein [Campylobacter hominis ATCC BAA-381] Length = 140 Score = 120 bits (303), Expect = 8e-26, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 74/147 (50%), Gaps = 13/147 (8%) Query: 29 IQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 + + E + L+ E + + ++++ + +G + L DCE LS+ +SPILDVE Sbjct: 4 LNALCSECGVKFYADELISENSRQIYRVYITKKNG-VNLDDCEALSRLLSPILDVEPPTS 62 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 G + LEVSSPG++R + S+F G +V + + +K+ G+I+ + L Sbjct: 63 GAFTLEVSSPGLERKLTTPSNFENSLGELVKITLK----NGEKISGEILSFKDEILKL-- 116 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 K +I+++F+ + A+ + Sbjct: 117 -----KTAENNEISVNFNEIKKAKTYI 138 >gi|163857447|ref|YP_001631745.1| hypothetical protein Bpet3135 [Bordetella petrii DSM 12804] gi|226703725|sp|A9ITY3|RIMP_BORPD RecName: Full=Ribosome maturation factor rimP gi|163261175|emb|CAP43477.1| conserved hypothetical protein [Bordetella petrii] Length = 163 Score = 120 bits (303), Expect = 8e-26, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 75/159 (47%), Gaps = 17/159 (10%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 D+ ++ Q + M V + LL++ +++ G + + DCE++S+ +S + +V Sbjct: 2 ADLYALTQQALAGMDVELVDVE--RAALGLLRVTIDKA-GGVRIEDCEQVSRQLSRVYEV 58 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 ENI + RLEV SPG+DRP+ +++ R+ G + ++ ++ G + + G Sbjct: 59 ENI--DYKRLEVGSPGVDRPLRTEAELRRFAGERIEIKLRQPLDGRKVFSGILSAPANDG 116 Query: 143 ---------FFLEKEKRGEKDMNELQIAISFDSLLSARL 172 F LE E + + + + + + A+L Sbjct: 117 AAADAQPAVFGLEFEAKKD---DIQVLNFTLGDVERAKL 152 >gi|323127912|gb|ADX25209.1| hypothetical protein SDE12394_08865 [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 127 Score = 120 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 7/129 (5%) Query: 48 EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE--NIIEGHYRLEVSSPGIDRPMVR 105 + +L I V+++ G +T+ D +L+ ISP+LD + Y LEVSSPG++RP+ Sbjct: 2 GSDYVLSILVDKE-GGITVEDTSDLTDIISPLLDTITPDPFPDQYMLEVSSPGLERPLKT 60 Query: 106 KSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFD 165 G V + + + G ++ ++ + + I + Sbjct: 61 VESLKAAVGSYVNVSLYKAIDKVKVFQGDLLAFDGETLTIDYLDKTRHK----TVDIPYQ 116 Query: 166 SLLSARLIV 174 ++ ARL V Sbjct: 117 TVAKARLAV 125 >gi|284030870|ref|YP_003380801.1| hypothetical protein Kfla_2937 [Kribbella flavida DSM 17836] gi|283810163|gb|ADB32002.1| protein of unknown function DUF150 [Kribbella flavida DSM 17836] Length = 178 Score = 120 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 76/152 (50%), Gaps = 15/152 (9%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + + ++P++E+ + + LL++ V+R DG ++L D ++++AIS LD + Sbjct: 13 LENFLRPLVEQFGCDLEAAEVTPAGRRRLLRVLVDR-DGGISLDDVADVTRAISKALDAD 71 Query: 84 NII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 +++ +G Y LEVSSPG+DRP+ + R +VA + KL G+I S+ Sbjct: 72 DVMGDGAYTLEVSSPGVDRPLTLPRHWRRNISRLVAVTLHSGD----KLTGRIKTVSDET 127 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L+ + +++ + A++ + Sbjct: 128 ADLDVDGTLR--------TVAYADVDKAKVQI 151 >gi|330466359|ref|YP_004404102.1| hypothetical protein VAB18032_11940 [Verrucosispora maris AB-18-032] gi|328809330|gb|AEB43502.1| hypothetical protein VAB18032_11940 [Verrucosispora maris AB-18-032] Length = 175 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 74/158 (46%), Gaps = 17/158 (10%) Query: 28 VIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE--- 83 +I PV++ + +S+ + ++++ V+ DG + L ++S+A+S LD Sbjct: 1 MIAPVVDSAGYDLEDLSVSRAGRRHVVRVIVD-ADGGINLDAVADVSRAVSAALDAAEES 59 Query: 84 --NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG------DKQKLIGKI 135 +I+ G Y+LEVSSPG+DRP+ + R G +V + + +++ G++ Sbjct: 60 GGDIVAGEYQLEVSSPGVDRPLTLPRHWRRNVGRLVRVTVRGAGESGARPAGDRQVTGRV 119 Query: 136 MGTSETGFFLEKEKRGEK----DMNELQIAISFDSLLS 169 + + LE + + D+ ++ + F L Sbjct: 120 VAADDESVALEVDGERVQWPYADLGPGRVQVEFSRLDE 157 >gi|322412489|gb|EFY03397.1| hypothetical protein SDD27957_08990 [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 127 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 7/129 (5%) Query: 48 EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE--NIIEGHYRLEVSSPGIDRPMVR 105 + +L I V+++ G +T+ D +L+ ISP+LD + Y LEVSSPG++RP+ Sbjct: 2 GSDYVLSILVDKE-GGITVEDTSDLTDIISPLLDTITPDPFPDQYMLEVSSPGLERPLKT 60 Query: 106 KSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFD 165 G V + + + G ++ ++ + + I + Sbjct: 61 VESLKSAVGSYVNVSLYKAIDKVKVFQGDLLAFDGETLTIDYLDKTRHK----TVDIPYQ 116 Query: 166 SLLSARLIV 174 ++ ARL V Sbjct: 117 TVAKARLAV 125 >gi|319778228|ref|YP_004129141.1| transcription termination protein NusA [Taylorella equigenitalis MCE9] gi|317108252|gb|ADU90998.1| transcription termination protein NusA [Taylorella equigenitalis MCE9] Length = 171 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 43/165 (26%), Positives = 77/165 (46%), Gaps = 20/165 (12%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 DI + + IE + + V I LL++ ++ D G +T+ DCEE+S+ +S I +V Sbjct: 2 KDIFEISRGPIEGLGYELVDIE--RAAQGLLRVTIDIDRG-ITIEDCEEVSRLLSRIYEV 58 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E++ + RLEV SPG DRP+ ++ DF R+ G V + + K+ G + T + Sbjct: 59 EDV--DYARLEVGSPGTDRPLKKEDDFHRFAGQRVEVKFHEAIASKKVFKGVLEVTQDIN 116 Query: 143 ----FFLEKE-----------KRGEKDMNELQIAISFDSLLSARL 172 L+ E ++ + I ++ + A+L Sbjct: 117 NPFRLVLDPEIKNSKSKKTKNVESAQEQSNQIIEFNYSDVDRAKL 161 >gi|116618454|ref|YP_818825.1| hypothetical protein LEUM_1359 [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227431860|ref|ZP_03913884.1| protein of hypothetical function DUF150 [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|122271346|sp|Q03WH0|RIMP_LEUMM RecName: Full=Ribosome maturation factor rimP gi|116097301|gb|ABJ62452.1| hypothetical protein LEUM_1359 [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227352402|gb|EEJ42604.1| protein of hypothetical function DUF150 [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 158 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 69/155 (44%), Gaps = 14/155 (9%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDD-GNMTLRDCEELSQAISPI 79 + +I P+IE + ++ +E +L+I +++ D +T+ D +Q ++ + Sbjct: 6 EQTVIDLISPIIEAHNDLLWDLTFTKEGGQKVLRILLDKPDHQFITMNDLTLFTQEVNEL 65 Query: 80 LD--VENIIEGHYRLEVSSPGIDRPMVRKSDFL--RWNGHVVACEIVLSSGDKQKLIGKI 135 LD + I Y L++SSPG DRP+ F + + + ++ ++K GKI Sbjct: 66 LDTVDPDPIPEAYVLDISSPGADRPLKELWHFEWAKEANENILVSLFVAKEGQKKWQGKI 125 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 ++ G L ++ ++FD + A Sbjct: 126 ADLNKDGLTLTTTNG--------RLPLTFDEIAKA 152 >gi|223984471|ref|ZP_03634604.1| hypothetical protein HOLDEFILI_01898 [Holdemania filiformis DSM 12042] gi|223963542|gb|EEF67921.1| hypothetical protein HOLDEFILI_01898 [Holdemania filiformis DSM 12042] Length = 156 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 6/158 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 M +I ++I PV++ + + + + EK + +LQI V R DG+M + C +S+ IS Sbjct: 1 MEQLENIKTLILPVLDSLGIQLYDLKWVNEKKSRILQIAVMRADGSMDIDTCALVSEKIS 60 Query: 78 PILDV-ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 LD ++ I Y LEV SPG +R + + G V + ++ G ++ Sbjct: 61 EALDAHDDWISFEYFLEVCSPGAERELRNAGEIRGALGKHVCVRLKSPVKSMMEITGDLL 120 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +ET L + +++ D + RL V Sbjct: 121 EMNETTLTLSYRDKAVTRKAQVE----LDQIEKIRLAV 154 >gi|229820978|ref|YP_002882504.1| protein of unknown function DUF150 [Beutenbergia cavernae DSM 12333] gi|259585729|sp|C5BWS6|RIMP_BEUC1 RecName: Full=Ribosome maturation factor rimP gi|229566891|gb|ACQ80742.1| protein of unknown function DUF150 [Beutenbergia cavernae DSM 12333] Length = 162 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 64/147 (43%), Gaps = 7/147 (4%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTL--RDCEELSQ 74 D L G + +++PV +++ + +++ ++ DG L D + S+ Sbjct: 6 DTALLGRLRDLLEPVAAGCGLHLEDVAVSPAGRRRRVRVTLDLADGPGALGSNDLADASR 65 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S LD +++ G Y LEVS+PG DRP+ + F R G +V + + G+ Sbjct: 66 AVSAALDDADVVTGPYVLEVSTPGTDRPLTQPRHFRRAQGRLVTLTLAA----GTHVSGR 121 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIA 161 ++ + G + + +A Sbjct: 122 LLSADDDGIHVRTDAGATTTFAYADVA 148 >gi|227497550|ref|ZP_03927778.1| YhbC family protein [Actinomyces urogenitalis DSM 15434] gi|226833004|gb|EEH65387.1| YhbC family protein [Actinomyces urogenitalis DSM 15434] Length = 154 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 16/159 (10%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGN--MTLRDCEELSQA 75 ++ ++ PV+E+ + +++ V+ DG + L E++Q Sbjct: 7 TATTERLTELLTPVVEQAGLFLEGVETTRAGRYSTVRVIVDLPDGPGDLDLDAVAEVTQT 66 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LD + ++G Y LEV+SPG +R + F R GH Q L G + Sbjct: 67 VSDALDEADPVKGQYTLEVTSPGAERELTTPRTFRRATGHQARLVTA-----GQTLTGTV 121 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + + I++ LL AR++V Sbjct: 122 RSADEETVTVEVDG--------SEQTIAYTDLLEARMVV 152 >gi|297191725|ref|ZP_06909123.1| UPF0090 protein [Streptomyces pristinaespiralis ATCC 25486] gi|197721419|gb|EDY65327.1| UPF0090 protein [Streptomyces pristinaespiralis ATCC 25486] Length = 165 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 77/153 (50%), Gaps = 9/153 (5%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + +++P++ +I + + +L+I V+ D+G + L C ELS+AIS L Sbjct: 6 SERLRGLLEPLVSAAELDLEEIEVSRAGRRRMLRITVDSDEG-VELDACAELSRAISEKL 64 Query: 81 DVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 D + + EG Y LEVSSPG DRP+ F+R G +V ++ L+ +++ Sbjct: 65 DETDAMGEGEYVLEVSSPGADRPLSEHRHFVRATGRLVKLQLKEGGD----LVARLLTVD 120 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + G LE + ++A FD ++ AR+ Sbjct: 121 DEGLDLEVPGVKGRKPTARRVA--FDDIVKARV 151 >gi|295098917|emb|CBK88006.1| Uncharacterized protein conserved in bacteria [Eubacterium cylindroides T2-87] Length = 154 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 5/144 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + I+PV+ E I L +N +LQI VE+ DG M L C S I +LD + Sbjct: 6 LKEWIEPVLNEKDCVLYDIEWLTNQNPPILQISVEKQDGTMDLDTCAMCSDVIGTLLDNK 65 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + Y LEV SPG +R + G V +++ +++G + ++ Sbjct: 66 DWYTKEYMLEVCSPGAERELKTDQQLRDAIGKYVYVKLIDPKQGLDQVLGDLKEVNDDSI 125 Query: 144 FLEKEKRGEKDMNELQIAISFDSL 167 + +++ I I +++ Sbjct: 126 IVAYKEKTRNK----TIEIDRNNI 145 >gi|116511572|ref|YP_808788.1| hypothetical protein LACR_0813 [Lactococcus lactis subsp. cremoris SK11] gi|122940261|sp|Q030K6|RIMP_LACLS RecName: Full=Ribosome maturation factor rimP gi|116107226|gb|ABJ72366.1| hypothetical protein LACR_0813 [Lactococcus lactis subsp. cremoris SK11] Length = 157 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 69/159 (43%), Gaps = 10/159 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + + I+P I F + + +++L I V+++ G + + + ELS+ ISP Sbjct: 3 DVVKIVEDFIKPHI-PKPFELFAVEWEKFGGDMMLSILVDKE-GGIEIDETAELSELISP 60 Query: 79 ILDVE--NIIEGH-YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +LD + Y LEV+SPG +RP+ + F G + ++ ++++ G + Sbjct: 61 LLDTISPDPFPTEGYLLEVASPGAERPLRKAEHFAGAVGEYIFVKLYQKINNEKEFTGDL 120 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + ++ + I I ++ A+ +V Sbjct: 121 VSFDGENLVVDVLDKTRHK----NIEIPLSAVAKAQTMV 155 >gi|333024105|ref|ZP_08452169.1| hypothetical protein STTU_1611 [Streptomyces sp. Tu6071] gi|332743957|gb|EGJ74398.1| hypothetical protein STTU_1611 [Streptomyces sp. Tu6071] Length = 197 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 78/169 (46%), Gaps = 11/169 (6%) Query: 8 HSKYEPRIFGDMGLAG--DISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNM 64 H+ R M + +++P++ ++++ + +LQI V+ D G + Sbjct: 4 HNSTRGRGVTRMSTTQSERLRELVEPLVTARDLDLEEVTVTPAGRRRVLQIVVDGDSG-V 62 Query: 65 TLRDCEELSQAISPILDVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVL 123 +L C ELS+ IS +LD + + E Y LEV+SPG DRP+ ++R G +V ++ Sbjct: 63 SLDTCAELSREISTVLDDTDAMGENEYVLEVTSPGADRPLTAHRHYVRATGRLVRFQL-- 120 Query: 124 SSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + +L+ +++ + G LE + ++ + AR+ Sbjct: 121 --AEGGELVARLLKADDAGLDLEVPGVKGRKPTSRRLEFP--EISKARV 165 >gi|125624586|ref|YP_001033069.1| hypothetical protein llmg_1797 [Lactococcus lactis subsp. cremoris MG1363] gi|166980233|sp|A2RM41|RIMP_LACLM RecName: Full=Ribosome maturation factor rimP gi|124493394|emb|CAL98368.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris MG1363] gi|300071377|gb|ADJ60777.1| hypothetical protein LLNZ_09255 [Lactococcus lactis subsp. cremoris NZ9000] Length = 157 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 69/159 (43%), Gaps = 10/159 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + + I+P I F + + +++L I V+++ G + + + ELS+ ISP Sbjct: 3 DVVKIVEDFIKPHI-PKPFELFAVEWEKFGGDMMLSILVDKE-GGIEIDETAELSELISP 60 Query: 79 ILDVE--NIIEGH-YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +LD + Y LEV+SPG +RP+ + F G + ++ ++++ G + Sbjct: 61 LLDTISPDPFPTEGYLLEVASPGAERPLRKAEHFAGAVGEYIFVKLYQKINNEKEFTGDL 120 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + ++ + I I ++ A+ +V Sbjct: 121 VSFDGETLVVDVLDKTRHK----NIEIPLSAVAKAQTMV 155 >gi|222110448|ref|YP_002552712.1| hypothetical protein Dtpsy_1245 [Acidovorax ebreus TPSY] gi|254800004|sp|B9MGN9|RIMP_DIAST RecName: Full=Ribosome maturation factor rimP gi|221729892|gb|ACM32712.1| protein of unknown function DUF150 [Acidovorax ebreus TPSY] Length = 197 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 74/183 (40%), Gaps = 38/183 (20%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVE--------------RDDGNMTLRDCE 70 + +++ + + + V+I LL+I ++ + +T+ DCE Sbjct: 3 LQQIVEQTVAGLGYDLVEIE--RSAGGLLRITIDLVWVPPTDEVSAAVGVEQFITVEDCE 60 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG---- 126 ++++ + L+VE + + RLEVSSPGIDR + ++DF R+ G V+ + G Sbjct: 61 KVTRQLQFALEVEGV--DYTRLEVSSPGIDRLLRNEADFKRFEGEVIDITLKQPMGAAAG 118 Query: 127 -----DKQKLIGKIMGTSETGFFLEKEK-----------RGEKDMNELQIAISFDSLLSA 170 +++K G + G+ + + + + D L A Sbjct: 119 GQVHANRKKFRGTLERADSGGWQIVWSDEPPVKPGQRISKKRVPAPLQALGFTLDELREA 178 Query: 171 RLI 173 RL Sbjct: 179 RLA 181 >gi|259585710|sp|A1W8Z6|RIMP_ACISJ RecName: Full=Ribosome maturation factor rimP Length = 197 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 74/183 (40%), Gaps = 38/183 (20%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVE--------------RDDGNMTLRDCE 70 + +++ + + + V+I LL+I ++ + +T+ DCE Sbjct: 3 LQQIVEQTVAGLGYDLVEIE--RSAGGLLRITIDLVWVPPTDEVSAAVGAEQFITVEDCE 60 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG---- 126 ++++ + L+VE + + RLEVSSPGIDR + ++DF R+ G V+ + G Sbjct: 61 KVTRQLQFALEVEGV--DYTRLEVSSPGIDRLLRNEADFKRFEGEVIDITLKQPMGAAAG 118 Query: 127 -----DKQKLIGKIMGTSETGFFLEKEK-----------RGEKDMNELQIAISFDSLLSA 170 +++K G + G+ + + + + D L A Sbjct: 119 GQVHANRKKFRGALERADSGGWQIVWSDEPPVKPGQRISKKRVPAPLQALGFTLDELREA 178 Query: 171 RLI 173 RL Sbjct: 179 RLA 181 >gi|241764250|ref|ZP_04762281.1| protein of unknown function DUF150 [Acidovorax delafieldii 2AN] gi|241366373|gb|EER60895.1| protein of unknown function DUF150 [Acidovorax delafieldii 2AN] Length = 197 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 77/182 (42%), Gaps = 37/182 (20%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD-------------DGNMTLRDCEE 71 + V++ ++ + + V+I LL++ ++ + +T+ DCE+ Sbjct: 3 LQQVVEQIVTGLGYDLVEIE--RSPGGLLRVTIDLPWVQPTVDAPVPATEQFITVEDCEK 60 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD---- 127 +++ + L+V+ + + RLEVSSPGIDRP+ + DF+R+ G V+ + G Sbjct: 61 VTRQLQFALEVDGV--EYKRLEVSSPGIDRPLRHEQDFVRFEGSVIDLTLKAPIGAAAAG 118 Query: 128 -----KQKLIGKIMGTSETGFFL-----------EKEKRGEKDMNELQIAISFDSLLSAR 171 ++K G + G+ + +K + + + D L AR Sbjct: 119 QVSATRKKFRGLLSRAESGGWQIVWSDEPAVKPGQKVSKKRVPAPLQALGFTLDELRDAR 178 Query: 172 LI 173 L Sbjct: 179 LA 180 >gi|22299481|ref|NP_682728.1| hypothetical protein tll1938 [Thermosynechococcus elongatus BP-1] gi|22295664|dbj|BAC09490.1| tll1938 [Thermosynechococcus elongatus BP-1] Length = 168 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 63/153 (41%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + ++ Q V ++ V + L + +L++ V + + +L DCE LS+A+ Sbjct: 17 LLPLVQTLAQQVADQEHLDLVSVQWLTHQSPPILRVEVRHPENDTSLEDCERLSRALEMA 76 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD E Y LEVSSPG+ + DF + G V K G ++ Sbjct: 77 LDELPEFEFAYVLEVSSPGLSDYLSSDRDFDAFRGFPVRVTTTAPHRGKTLWEGNLIRRD 136 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 E +L + R +AI + S +L Sbjct: 137 EVNVYLNQRGRS--------LAIPRSLIASVQL 161 >gi|315636536|ref|ZP_07891772.1| conserved hypothetical protein [Arcobacter butzleri JV22] gi|315479185|gb|EFU69882.1| conserved hypothetical protein [Arcobacter butzleri JV22] Length = 142 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 73/147 (49%), Gaps = 14/147 (9%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + I+ +E + + IS L E + + ++ + +G + L C E+S+ +SPILDVE Sbjct: 3 LEESIKLTVESLGAKLYDISTLREHDKNIFRVSI-TCEGGVNLDKCAEISRMLSPILDVE 61 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + G Y LEVSSPGI+R + + FL G V + + + G+++ E Sbjct: 62 EPMNGEYILEVSSPGIERKLKKVDHFLASIGEKVKVKNFAT----EVFKGELICADEEKI 117 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSA 170 ++ E E +++D++LSA Sbjct: 118 VIKTEFGNE--------ELTYDNILSA 136 >gi|315604482|ref|ZP_07879547.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str. F0310] gi|315313809|gb|EFU61861.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str. F0310] Length = 156 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 68/150 (45%), Gaps = 15/150 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERD--DGNMTLRDCEELSQAISPILD 81 + ++ P++E+ ++ + LL++ V+ G + +S+A+S LD Sbjct: 10 LEELLAPIVEQAGLELESVTRSRSDHTPLLRVIVDAPIGAGGVDSDALANVSRAVSRALD 69 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + I+G Y LEVS+PG +R + + +LR G +V ++ + G+++ E+ Sbjct: 70 DADPIDGEYLLEVSTPGAERELTKVDHWLRQVGRLVRVKLRA----GGHVSGRVVDADES 125 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 G ++ + I++ + AR Sbjct: 126 GATIDVDGNAT--------TIAYSDMRKAR 147 >gi|149925032|ref|ZP_01913350.1| hypothetical protein PPSIR1_10025 [Plesiocystis pacifica SIR-1] gi|149814096|gb|EDM73722.1| hypothetical protein PPSIR1_10025 [Plesiocystis pacifica SIR-1] Length = 174 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 38/172 (22%), Positives = 76/172 (44%), Gaps = 24/172 (13%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 + + I+PV +M + ++ I + +L++F++ G +T+ DC + + I LD Sbjct: 1 MEAAIEPVCADMGYEALLIEWSGSGQRRVLRVFLDSPKG-VTIADCTRMGRLIGNSLDAA 59 Query: 83 -------------ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI----VLSS 125 ++ Y LEVSSPG+DRP+ +K F G V + + Sbjct: 60 EAAVEAGEGNPALAALLAPGYTLEVSSPGVDRPLAKKRHFTAQVGGRVKLKTWESPAAAD 119 Query: 126 GDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQ----IAISFDSLLSARLI 173 D++ G+++ + E ++RG +++ + I I + A L+ Sbjct: 120 ADERSFNGRLVAVHDDDAAPEDQRRGTVVVHDPERDRTIPIPLPLIRRANLV 171 >gi|320008231|gb|ADW03081.1| protein of unknown function DUF150 [Streptomyces flavogriseus ATCC 33331] Length = 165 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 77/153 (50%), Gaps = 9/153 (5%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + +++P++ +I + + +L++ V+ +DG + L C ELS++IS L Sbjct: 6 SDRLRGLLEPLVSAKELDLEEIEVSRAGRRRVLRVIVDSEDG-VELDTCAELSRSISEKL 64 Query: 81 DVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 D + + E Y LEVSSPG DRP+ ++R G + + G+ +L+ +I+G Sbjct: 65 DETDAMGEDEYVLEVSSPGADRPLTEHRHYVRATGRLARLTL----GEGGELVARILGVD 120 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + G LE + ++A FD + AR+ Sbjct: 121 DEGLDLEVPGVKGRKPTSRRVA--FDEISRARV 151 >gi|264677929|ref|YP_003277836.1| hypothetical protein CtCNB1_1794 [Comamonas testosteroni CNB-2] gi|262208442|gb|ACY32540.1| hypothetical conserved protein [Comamonas testosteroni CNB-2] Length = 192 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 75/181 (41%), Gaps = 36/181 (19%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD------------DGNMTLRDCEEL 72 + +++ + + + V+I LL+I ++ + +T+ DCE++ Sbjct: 3 LQQIVEQTVTGLGYDLVEIE--RSAGGLLRITIDLPWQAPEEGAPELPEQFVTVEDCEKV 60 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG------ 126 ++ + L+V+ + RLEVSSPGIDR + + DF+R+ G V + G Sbjct: 61 TRQLQFALEVDG--ADYARLEVSSPGIDRLLRHEQDFIRFEGSEVDLTLKAPIGAAGGDK 118 Query: 127 ---DKQKLIGKIMGTSETGFFLEKEK-----------RGEKDMNELQIAISFDSLLSARL 172 +++K G + T E G+ + + + + + D L ARL Sbjct: 119 INANRKKFRGTLERTEEGGWQIVWSDEPPPKPGVRVSKKREPAPLNAMGFTLDELREARL 178 Query: 173 I 173 Sbjct: 179 A 179 >gi|326799023|ref|YP_004316842.1| ribosome maturation factor rimP [Sphingobacterium sp. 21] gi|326549787|gb|ADZ78172.1| Ribosome maturation factor rimP [Sphingobacterium sp. 21] Length = 154 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 75/159 (47%), Gaps = 9/159 (5%) Query: 19 MGLAGDISSVIQPVIEEM-SFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 MG+ ++ +++ I + V + + L I ++ D G +T++DC +S+ + Sbjct: 1 MGIEKRVTELVEEKIADRPDLFLVDVKMHSNGK--LIIHMDGDQG-ITIQDCAAISRHVG 57 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 L+ EN IE Y LEVSSPGID P+ + + G + + D K G ++ Sbjct: 58 YHLEEENAIENAYNLEVSSPGIDTPLKLLRQYQKNIGRSITLK----MADGSKREGTLLA 113 Query: 138 TSETGFFL-EKEKRGEKDMNELQIAISFDSLLSARLIVT 175 SE L E K K +++ + D ++ +++++ Sbjct: 114 ASEKEMKLAETIKEKGKKAIQVETVVPLDQVIETKVLIS 152 >gi|257460847|ref|ZP_05625948.1| conserved hypothetical protein [Campylobacter gracilis RM3268] gi|257442178|gb|EEV17320.1| conserved hypothetical protein [Campylobacter gracilis RM3268] Length = 139 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 14/147 (9%) Query: 29 IQPVIEEMSFRSVQISLLEEKNLLL-QIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 ++ + E + + + E + +I + + G + L DCE LS+ +SPI DVE +E Sbjct: 4 LEALARECGVQLYDVETVSENGRTIYRISITKA-GGVGLDDCERLSRLLSPIYDVEPPLE 62 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 G + LEV SPG++R + + F G +V D QKL G+++ L Sbjct: 63 GEWTLEVGSPGLERKLSKPQHFANSVGELVRLSCT----DGQKLSGEVLDCEGGVLRLRT 118 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 + ++++ D + AR V Sbjct: 119 DGG--------EVSVRLDEIKKARTYV 137 >gi|157803621|ref|YP_001492170.1| hypothetical protein A1E_02200 [Rickettsia canadensis str. McKiel] gi|166987409|sp|A8EYF2|RIMP_RICCK RecName: Full=Ribosome maturation factor rimP gi|157784884|gb|ABV73385.1| hypothetical protein A1E_02200 [Rickettsia canadensis str. McKiel] Length = 125 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 66/121 (54%), Gaps = 1/121 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-MTLRDCEELSQAISPI 79 + I++VI+ + +M F V + + +++I ++ + +++ DC ++S+ I I Sbjct: 4 IEQQITNVIEESLIDMGFELVLVKFKGVNSKVVEILIDSLNSEKVSVEDCTKVSRTIPAI 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVEN+IE LEV+S G++RP+V+ ++ R+ G V + DK GKI+ Sbjct: 64 LDVENLIEDASSLEVASSGLERPLVKFENYNRFLGREVKITLKELLNDKTSYQGKIIKAE 123 Query: 140 E 140 Sbjct: 124 N 124 >gi|221067738|ref|ZP_03543843.1| protein of unknown function DUF150 [Comamonas testosteroni KF-1] gi|220712761|gb|EED68129.1| protein of unknown function DUF150 [Comamonas testosteroni KF-1] Length = 192 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 75/181 (41%), Gaps = 36/181 (19%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD------------DGNMTLRDCEEL 72 + +++ + + + V+I LL+I ++ + +T+ DCE++ Sbjct: 3 LQQIVEQTVTGLGYDLVEIE--RSAGGLLRITIDLPWQAPEEGVPELPEQFVTVEDCEKV 60 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG------ 126 ++ + L+V+ + RLEVSSPGIDR + + DF+R+ G V + G Sbjct: 61 TRQLQFALEVDG--ADYARLEVSSPGIDRLLRHEQDFIRFEGSEVDLTLKAPIGAAGGDK 118 Query: 127 ---DKQKLIGKIMGTSETGFFLEKEK-----------RGEKDMNELQIAISFDSLLSARL 172 +++K G + T E G+ + + + + + D L ARL Sbjct: 119 INANRKKFRGTLERTEEGGWQIVWSDEPPPKPGVRVSKKREPAPLNAMGFTLDELREARL 178 Query: 173 I 173 Sbjct: 179 A 179 >gi|293604236|ref|ZP_06686644.1| protein of hypothetical function DUF150 [Achromobacter piechaudii ATCC 43553] gi|292817461|gb|EFF76534.1| protein of hypothetical function DUF150 [Achromobacter piechaudii ATCC 43553] Length = 174 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 76/162 (46%), Gaps = 20/162 (12%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 D+ ++ + + M V + LL++ ++R G + + DCE++S+ +S + +V Sbjct: 10 ADLFALTEEALAGMDVELVDVE--RAALGLLRVTIDRV-GGVRIEDCEQVSRQLSRVFEV 66 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM------ 136 EN+ + RLEV SPGIDRP+ +++F R+ G + ++ + ++ G + Sbjct: 67 ENV--DYKRLEVGSPGIDRPLRNEAEFRRFAGERIEIKLREALDGRKVFSGTLTVPEDAA 124 Query: 137 ------GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G T F LE E K + + + + A+L Sbjct: 125 ASDADAGMHRTVFGLEFE---AKKNEIQVLNFTVEDIERAKL 163 >gi|157738248|ref|YP_001490932.1| hypothetical protein Abu_2045 [Arcobacter butzleri RM4018] gi|166980266|sp|A8EWD9|RIMP_ARCB4 RecName: Full=Ribosome maturation factor rimP gi|157700102|gb|ABV68262.1| conserved hypothetical protein (DUF150 domain protein) [Arcobacter butzleri RM4018] Length = 142 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 73/147 (49%), Gaps = 14/147 (9%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + I+ +E + + IS L E + + ++ + +G + L C E+S+ +SPILDVE Sbjct: 3 LEESIKLTVESLGAKLYDISTLREHDKNIFRVSI-TCEGGVNLDKCAEISRMLSPILDVE 61 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + G Y LEVSSPGI+R + + FL G V + + + G+++ E Sbjct: 62 EPMNGEYLLEVSSPGIERKLKKVDHFLASIGEKVKVKNFAT----EVFKGELICADEEKI 117 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSA 170 ++ E E +++D++LSA Sbjct: 118 VIKTEFGNE--------ELTYDNILSA 136 >gi|291276415|ref|YP_003516187.1| hypothetical protein HMU01790 [Helicobacter mustelae 12198] gi|290963609|emb|CBG39441.1| Putative hypothetical protein [Helicobacter mustelae 12198] Length = 147 Score = 118 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 68/155 (43%), Gaps = 12/155 (7%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 ++ ++ I+ +I+ + + I L+E +L+I + D +TL C+ +S+A+SP+ Sbjct: 2 ISQELQERIENLIQSLGYTLYDIVFLKENQSDILRISITHADQPITLDACQMVSEALSPL 61 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + Y LEVSSPG++R + F V + DK + ++ Sbjct: 62 LDVALSDQKSYFLEVSSPGVERILKTPRHFALSLHTRVRVRL----EDKSEFEAVLLEAK 117 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E + ++ + +L + I+ Sbjct: 118 EEHATFLLDDGVKQSH-------PYAALKKVKTIL 145 >gi|237749787|ref|ZP_04580267.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] gi|229374652|gb|EEO25043.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] Length = 167 Score = 118 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 72/141 (51%), Gaps = 7/141 (4%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + D+ I+ +I + I LL+E +++L+I + + +G ++L DCE +S I+P+ Sbjct: 2 ITQDLHDKIESLITQKGLELYDIELLKENESMILRISIFKKEG-ISLDDCENISTLIAPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE Y LEVSSPG++R + + FL G VA + +K + G + + Sbjct: 61 LDVELSDLEAYHLEVSSPGVERNLKKPKHFLCSIGQKVAVTMS----NKTIINGILESYN 116 Query: 140 ETGFFL-EKEKRGEKDMNELQ 159 + E K +K N L+ Sbjct: 117 TDEITIKEILKPTKKKQNNLK 137 >gi|329736175|gb|EGG72447.1| hypothetical protein SEVCU028_0396 [Staphylococcus epidermidis VCU028] Length = 114 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 57/91 (62%), Gaps = 2/91 (2%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + ++IQPV+ +++F V I ++E K+ L+I ++++ G + L DC S+ IS + Sbjct: 4 ITEQVEALIQPVLNDLNFELVDIEYVKEGKDHFLRISIDKE-GGVDLNDCTIASEKISEV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFL 110 +D + I Y L+V+SPG +RP+ +K F+ Sbjct: 63 MDENDPIPEMYYLDVASPGAERPIKKKKIFI 93 >gi|259016315|sp|Q8DHL1|RIMP_THEEB RecName: Full=Ribosome maturation factor rimP Length = 157 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 63/153 (41%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + ++ Q V ++ V + L + +L++ V + + +L DCE LS+A+ Sbjct: 6 LLPLVQTLAQQVADQEHLDLVSVQWLTHQSPPILRVEVRHPENDTSLEDCERLSRALEMA 65 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD E Y LEVSSPG+ + DF + G V K G ++ Sbjct: 66 LDELPEFEFAYVLEVSSPGLSDYLSSDRDFDAFRGFPVRVTTTAPHRGKTLWEGNLIRRD 125 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 E +L + R +AI + S +L Sbjct: 126 EVNVYLNQRGRS--------LAIPRSLIASVQL 150 >gi|294507806|ref|YP_003571864.1| hypothetical protein SRM_01991 [Salinibacter ruber M8] gi|294344134|emb|CBH24912.1| conserved hypothetical protein [Salinibacter ruber M8] Length = 160 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 79/155 (50%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 LA +S + + VI + V + + K +++++++ ++ + D +S+ + + Sbjct: 13 LADRVSGLTEEVIVGTDYFLVDVEVRGHKGTRVVEVYIDSEE-EVGHDDLALISKEVGFL 71 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE++++G Y+LE+SSPGI RP+ + + + G + S GD++ ++G + Sbjct: 72 LDVEDVVDGSYKLELSSPGIKRPLTMPAQYRKNVGRTLRVR-FESDGDEEIVVGDLTDAD 130 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + LE + ++ + + ++ AR+ + Sbjct: 131 DEEIELEL-------PSAERLQLPYTTITQARIEL 158 >gi|311104986|ref|YP_003977839.1| hypothetical protein AXYL_01790 [Achromobacter xylosoxidans A8] gi|310759675|gb|ADP15124.1| hypothetical protein AXYL_01790 [Achromobacter xylosoxidans A8] Length = 182 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 77/163 (47%), Gaps = 21/163 (12%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 D+ ++ + + M V + LL++ ++R G + + DCE++S+ +S + +V Sbjct: 17 ADLFALTKEALAGMDVELVDVE--RAALGLLRVTIDRV-GGVRIEDCEQVSRQLSRVFEV 73 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM------ 136 EN+ + R+EV SPG+DRP+ +++F R+ G + ++ + ++ G + Sbjct: 74 ENV--DYKRMEVGSPGVDRPLRNEAEFRRFAGERIEIKLREALDGRKVFAGILTMPEDDA 131 Query: 137 -------GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G +T F LE E K + + D + A+L Sbjct: 132 AASDAAAGMQKTVFGLEFE---AKKNEIQVLNFTVDDIERAKL 171 >gi|319762632|ref|YP_004126569.1| hypothetical protein Alide_1938 [Alicycliphilus denitrificans BC] gi|330824722|ref|YP_004388025.1| ribosome maturation factor rimP [Alicycliphilus denitrificans K601] gi|317117193|gb|ADU99681.1| protein of unknown function DUF150 [Alicycliphilus denitrificans BC] gi|329310094|gb|AEB84509.1| Ribosome maturation factor rimP [Alicycliphilus denitrificans K601] Length = 196 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 75/182 (41%), Gaps = 37/182 (20%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVE-----RDDGN--------MTLRDCEE 71 + +++ + + + V+I LL+I ++ DG +T+ DCE+ Sbjct: 3 LQQIVEQTVAGLGYDLVEIE--RSAGGLLRITIDLMWAPPADGGEVQATGQFVTVEDCEK 60 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS------ 125 +++ + L+VE + + RLEVSSPGIDR + + DF R+ G V+ + Sbjct: 61 VTRQLQFALEVEGV--DYKRLEVSSPGIDRLLRNEQDFTRFEGEVIDITLKEPLGAAAGG 118 Query: 126 ---GDKQKLIGKIMGTSETGFFL-----------EKEKRGEKDMNELQIAISFDSLLSAR 171 +++K G + G+ + ++ + + + D L AR Sbjct: 119 QVAANRKKFRGTLERVPAGGWQIVWSDEPPVKPGQRVSKKRVPAPLQALGFTLDELREAR 178 Query: 172 LI 173 L Sbjct: 179 LA 180 >gi|325479429|gb|EGC82525.1| hypothetical protein HMPREF9290_1585 [Anaerococcus prevotii ACS-065-V-Col13] Length = 147 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 11/152 (7%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 M L + + + I E+ + V I K N +L F+ ++G +T+ DCE++S + Sbjct: 1 MDLTDRLREIFEADISELGYELVDIEYKGSKGNKILTFFIFNEEG-ITIDDCEKVSAFLD 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD ++I+ Y LEVSS + RP+ D R V+ ++ D + +GK+ Sbjct: 60 TRLDELDLIKDSYYLEVSSQDLSRPLKTDRDIERNINEVLKVKMK----DGEVFLGKVSD 115 Query: 138 TSETGFFLEKEKRG-----EKDMNELQIAISF 164 +E + + E + D+ ++ I I F Sbjct: 116 INEDTYEFDLEDGTSRQVNKSDVKQINIEIVF 147 >gi|15672745|ref|NP_266919.1| hypothetical protein L173151 [Lactococcus lactis subsp. lactis Il1403] gi|34223137|sp|Q9CHG8|RIMP_LACLA RecName: Full=Ribosome maturation factor rimP gi|12723681|gb|AAK04861.1|AE006310_3 conserved hypothetical protein [Lactococcus lactis subsp. lactis Il1403] gi|326406314|gb|ADZ63385.1| Ribosome maturation factor [Lactococcus lactis subsp. lactis CV56] Length = 157 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 71/159 (44%), Gaps = 10/159 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + + I+P I + F + + +++L I V+++ G + + + ELS+ ISP Sbjct: 3 DVVKIVEDFIRPHIPQ-PFELFAVEWEKFGGDMMLSILVDKE-GGIEIDETAELSEIISP 60 Query: 79 ILDVE--NIIEGH-YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +LD + Y LEV+SPG +RP+ + F G + ++ +++++ G + Sbjct: 61 LLDTISPDPFPTEGYLLEVASPGAERPLRKAEHFAGAVGEYIFVKLYQKINNEKEITGDL 120 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + ++ + I I ++ A+ +V Sbjct: 121 VSFDGETLVVDVLDKTRHK----NIEIPLSAVAKAQTMV 155 >gi|89900916|ref|YP_523387.1| hypothetical protein Rfer_2132 [Rhodoferax ferrireducens T118] gi|122479183|sp|Q21WJ7|RIMP_RHOFD RecName: Full=Ribosome maturation factor rimP gi|89345653|gb|ABD69856.1| protein of unknown function DUF150 [Rhodoferax ferrireducens T118] Length = 204 Score = 117 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 74/187 (39%), Gaps = 42/187 (22%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD----------DGNMTLRDCEELSQ 74 + +++ + + + V+I LL+I ++ + +T+ DCE++++ Sbjct: 3 LKEIVEQTVAGLGYDLVEIE--RSAGGLLRITIDLPWVPGTAGSEAEQFVTVEDCEKVTR 60 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD------- 127 + L+V+ + + RLEVSSPGIDRP+ DF R+ G + + G Sbjct: 61 QLLFALEVDGV--DYKRLEVSSPGIDRPLRHGQDFERFVGREIDVTLKAPIGAAAGALVN 118 Query: 128 --KQKLIGKIMGTS----ETGFFL---------------EKEKRGEKDMNELQIAISFDS 166 ++K G + T E+G ++ + + + D Sbjct: 119 ATRKKFRGTLERTQSSNGESGVVPGWQIVWSDAPEVKPGQRVSKKRLPAPLQALGFTLDE 178 Query: 167 LLSARLI 173 L ARL Sbjct: 179 LKEARLA 185 >gi|297156813|gb|ADI06525.1| hypothetical protein SBI_03404 [Streptomyces bingchenggensis BCW-1] Length = 180 Score = 117 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 9/153 (5%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + +++P++ ++ + K +L+I V+ DDG + L C ELS+AIS L Sbjct: 6 SERLRGLLEPLVSARDLDLEEVEVTPAGKRRVLRIVVDSDDG-VQLDACAELSRAISQTL 64 Query: 81 DVENIIE-GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 D + + Y LEV+SPG DRP+ + R G ++ + + +L+ +I Sbjct: 65 DDTDAMGRHPYVLEVTSPGADRPLTEPRHYRRAAGRLMKARL----AEGGELVARITAVD 120 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + G L+ E G K ++F + AR+ Sbjct: 121 DEG--LDVEVPGVKGRRPTARRLAFKEISKARV 151 >gi|325962804|ref|YP_004240710.1| hypothetical protein Asphe3_14020 [Arthrobacter phenanthrenivorans Sphe3] gi|323468891|gb|ADX72576.1| uncharacterized conserved protein [Arthrobacter phenanthrenivorans Sphe3] Length = 192 Score = 117 bits (295), Expect = 7e-25, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 72/159 (45%), Gaps = 13/159 (8%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDD---GNMTLRDCEELSQAISP 78 A + ++++P ++ ++++ + ++ + V+ G + L ++S+ +S Sbjct: 16 AARLRALLEPAVQANRLYLEDVAIVAGSHRVVHVVVDLPQEETGGVGLDVIADISKVLSD 75 Query: 79 ILDVENIIEG--HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 +LD + + Y LEVSSPG+ RP+ + R G +V ++ + G+I Sbjct: 76 VLD-NDPGDDGRPYDLEVSSPGVGRPLTEPRHWHRAKGRLVKVNVLQGD----NVTGRIQ 130 Query: 137 GTSETGFFLEKE---KRGEKDMNELQIAISFDSLLSARL 172 + G + E K+G K + + FD + + ++ Sbjct: 131 AVDDAGVTIVPEIAVKKGMKPRQGDPVKLPFDRIRNGKV 169 >gi|259586215|sp|Q2S1N5|RIMP_SALRD RecName: Full=Ribosome maturation factor rimP Length = 155 Score = 117 bits (295), Expect = 7e-25, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 79/155 (50%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 LA +S + + VI + V + + K +++++++ ++ + D +S+ I + Sbjct: 8 LADRVSGLTEEVIVGTDYFLVDVEVRGHKGTRVVEVYIDSEE-EVGHDDLALISKEIGFL 66 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE++++G Y+LE+SSPGI RP+ + + + G + S GD++ ++G + Sbjct: 67 LDVEDVVDGSYKLELSSPGIKRPLTMPAQYRKNVGRTLRVR-FESDGDEEIVVGDLTDAD 125 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + LE + ++ + + ++ AR+ + Sbjct: 126 DEEIELEL-------PSAERLQLPYTTITQARIEL 153 >gi|47095906|ref|ZP_00233509.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a F6854] gi|47015652|gb|EAL06582.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a F6854] Length = 101 Score = 117 bits (295), Expect = 7e-25, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 4/103 (3%) Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+ +S +D + I +Y LEVSSPG +RP+ ++ DF V ++ Sbjct: 1 MSEKVSEKMDENDPITQNYFLEVSSPGAERPLKKEQDFENAVSKYVHVTSYEPIDGRKMW 60 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G ++ T + + K + I D + ARL + Sbjct: 61 EGTLVSYDGTTLVITITDKTRK----ITCEIPKDKVAKARLAI 99 >gi|281491259|ref|YP_003353239.1| hypothetical protein LLKF_0783 [Lactococcus lactis subsp. lactis KF147] gi|281375000|gb|ADA64518.1| Hypothetical protein LLKF_0783 [Lactococcus lactis subsp. lactis KF147] Length = 157 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 71/159 (44%), Gaps = 10/159 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + + I+P I + F + + +++L I V+++ G + + + ELS+ ISP Sbjct: 3 DVVKIVEDFIRPHIPQ-PFELFAVEWEKFGGDMMLSILVDKE-GGIEIDETAELSEIISP 60 Query: 79 ILDVE--NIIEGH-YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +LD + Y LEV+SPG +RP+ + F G + ++ +++++ G + Sbjct: 61 LLDTISPDPFPTEGYLLEVASPGAERPLRKAEHFAGAVGEYIFVKLYQKINNEKEITGDL 120 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + ++ + I I ++ A+ +V Sbjct: 121 VSFDGETLVVDVLDKTRYK----NIEIPLSAVAKAQTMV 155 >gi|296111950|ref|YP_003622332.1| hypothetical protein LKI_09120 [Leuconostoc kimchii IMSNU 11154] gi|295833482|gb|ADG41363.1| hypothetical protein LKI_09120 [Leuconostoc kimchii IMSNU 11154] Length = 158 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 74/158 (46%), Gaps = 14/158 (8%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDD-GNMTLRDCEELSQAISP 78 + I+ +I P++E+ +S E +L+I +++ + ++T+ D + +Q ++ Sbjct: 5 VEQKITVLITPIVEKRDKLLWDLSYTREGGQKVLRILLDKPNHESITMTDLTDFTQEVNE 64 Query: 79 ILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWN--GHVVACEIVLSSGDKQKLIGK 134 +LD + I Y L++SSPG DRP+++ F V + ++ ++K G Sbjct: 65 LLDTTDPDPIPEPYLLDISSPGADRPLIKPWHFKWAQESEEEVLISLFVAKNGQKKWQGN 124 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 I ++ G L E ++ ++FD + A L Sbjct: 125 ISSLTDDGLVLATE--------ADELVLNFDEIAKAVL 154 >gi|317498936|ref|ZP_07957219.1| hypothetical protein HMPREF0996_02203 [Lachnospiraceae bacterium 5_1_63FAA] gi|316893769|gb|EFV15968.1| hypothetical protein HMPREF0996_02203 [Lachnospiraceae bacterium 5_1_63FAA] Length = 95 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 54/94 (57%), Gaps = 2/94 (2%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELS 73 + + + ++ P+IE +F V + ++E N L+++ +++ G + + DC +S Sbjct: 1 MARRVDIETKTEELVLPIIEANNFELVDVEYVKEGANWYLRVYADKE-GGIAIDDCVLIS 59 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKS 107 +++ LD E+ IE Y LEVSSPG+ RP+ +K Sbjct: 60 RSLEEKLDAEDFIEDAYILEVSSPGLGRPLKKKK 93 >gi|239815724|ref|YP_002944634.1| hypothetical protein Vapar_2746 [Variovorax paradoxus S110] gi|259645131|sp|C5CLW1|RIMP_VARPS RecName: Full=Ribosome maturation factor rimP gi|239802301|gb|ACS19368.1| protein of unknown function DUF150 [Variovorax paradoxus S110] Length = 212 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 71/187 (37%), Gaps = 42/187 (22%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVE--------------RDDGNMTLRDCE 70 + ++ + + + V+I LL++ ++ + +T+ DCE Sbjct: 3 LQQTVEQTVAGLGYDLVEIE--RSAGGLLRVTIDLPWTAPTSEAVAAGIPEPFVTVEDCE 60 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD--- 127 ++++ + L+V+ + + RLEVSSPGIDRP+ + DF R+ G V+ + G Sbjct: 61 KVTRQLQFALEVDGV--DYKRLEVSSPGIDRPLRNEQDFERFVGEVIDITLKAPMGAAAA 118 Query: 128 ------KQKLIGKIMGTSETG------FFL---------EKEKRGEKDMNELQIAISFDS 166 ++K G + + +K + + D Sbjct: 119 GQVSATRKKFRGTLERVAGADGAPGWQIVWSDAPEPKPGQKVSKKRAPAKLHALGFVLDE 178 Query: 167 LLSARLI 173 L ARL Sbjct: 179 LRDARLA 185 >gi|15675575|ref|NP_269749.1| hypothetical protein SPy_1725 [Streptococcus pyogenes M1 GAS] gi|19746627|ref|NP_607763.1| hypothetical protein spyM18_1733 [Streptococcus pyogenes MGAS8232] gi|13622779|gb|AAK34470.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS] gi|19748846|gb|AAL98262.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232] Length = 127 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 56/129 (43%), Gaps = 7/129 (5%) Query: 48 EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENI--IEGHYRLEVSSPGIDRPMVR 105 + +L I V+++ G +T+ D +L+ ISP+LD + Y LEVSSPG++RP+ Sbjct: 2 GSDYILSILVDKE-GGITVEDTSDLTNIISPLLDTIDPDPFPNQYMLEVSSPGLERPLKT 60 Query: 106 KSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFD 165 G + + + + G ++ ++ + + + I + Sbjct: 61 ADSLKAAVGSYINVSLYQAIDKVKVFQGDLLAFDGETLTIDYLDKTRHKI----VNIPYQ 116 Query: 166 SLLSARLIV 174 ++ R+ V Sbjct: 117 AVAKVRMAV 125 >gi|308233944|ref|ZP_07664681.1| hypothetical protein AvagD15_02782 [Atopobium vaginae DSM 15829] gi|328943956|ref|ZP_08241421.1| hypothetical protein HMPREF0091_10646 [Atopobium vaginae DSM 15829] gi|327491925|gb|EGF23699.1| hypothetical protein HMPREF0091_10646 [Atopobium vaginae DSM 15829] Length = 156 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 59/135 (43%), Gaps = 5/135 (3%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGN---MTLRDCEELSQA 75 + + ++ V + L + ++++ ++ D +TL + S+ Sbjct: 5 DIQTTLLKALEEAATPRGIDIVDVELAGTRTAPVIRLRIDHLDETLPTITLDEVAAQSEW 64 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I+ +LD + I+ Y LEVSSPG+ RP+ R DF R+ G V + +++ GK+ Sbjct: 65 INEVLDSLDPIDSSYTLEVSSPGLARPLRRIHDFERFCGQEVELVTR-ALEGRKRFTGKL 123 Query: 136 MGTSETGFFLEKEKR 150 F L + + Sbjct: 124 SSVEGNTFTLIVDGQ 138 >gi|320108354|ref|YP_004183944.1| hypothetical protein AciPR4_3194 [Terriglobus saanensis SP1PR4] gi|319926875|gb|ADV83950.1| protein of unknown function DUF150 [Terriglobus saanensis SP1PR4] Length = 195 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 42/193 (21%), Positives = 72/193 (37%), Gaps = 39/193 (20%) Query: 19 MGLA-GDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVER----------------- 59 M L I V V++S LQIFVE+ Sbjct: 1 MALELDKIRDAADRVAASHQLEIVEVSFTGAGKFSALQIFVEKNAEGRAAMLREAETDES 60 Query: 60 ---DDG-------NMTLRDCEELSQAISPILDVENIIEG--HYRLEVSSPGIDRPMVRKS 107 G +T +DC + +LDVE ++ G Y LEVSSPGI+R + + + Sbjct: 61 KALPRGVPVEALSGVTHQDCAAFATDFGTLLDVEELVPGTTEYTLEVSSPGIERKLFKTA 120 Query: 108 DFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDM-------NELQI 160 D+ R+ G +V + + + G++ ++ L+ K + Sbjct: 121 DYERFAGSLVTLKTFQAINGTKNFTGRMT-FTDGTATLDLAAVKAKGKKKGTKAEAPQTV 179 Query: 161 AISFDSLLSARLI 173 I F+++ A+L+ Sbjct: 180 EIPFNAIEKAQLV 192 >gi|284929276|ref|YP_003421798.1| hypothetical protein UCYN_07210 [cyanobacterium UCYN-A] gi|284809720|gb|ADB95417.1| uncharacterized conserved protein [cyanobacterium UCYN-A] Length = 125 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 1/111 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L I + PVI+EM V + K +L+ + N++L DC ++S+ + I Sbjct: 5 LIQQIIDLTTPVIKEMGIDIVNVVFHTNKCPSILRFDISNPAENISLDDCAKVSRTLESI 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 LD II Y LEVSSPGI + + + DF + G + +K++ Sbjct: 65 LDETTIIPHAYVLEVSSPGISQILNSERDFTTFQGFAIGIMTSPPYLNKER 115 >gi|28895280|ref|NP_801630.1| hypothetical protein SPs0368 [Streptococcus pyogenes SSI-1] gi|28810526|dbj|BAC63463.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1] Length = 127 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 7/129 (5%) Query: 48 EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENI--IEGHYRLEVSSPGIDRPMVR 105 + +L I V+++DG +T+ D +L+ ISP+LD + Y LEVSSPG++RP+ Sbjct: 2 GSDYILSILVDKEDG-ITVEDTSDLTNIISPLLDTIDPDPFPNQYMLEVSSPGLERPLKT 60 Query: 106 KSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFD 165 G + + + + G ++ ++ + + + I + Sbjct: 61 ADSLKAAVGSYINVSLYQAIDKVKVFQGDLLAFDGETLTIDYLDKTRHKI----VNIPYQ 116 Query: 166 SLLSARLIV 174 ++ R+ V Sbjct: 117 AVAKVRMAV 125 >gi|306820435|ref|ZP_07454071.1| protein of hypothetical function DUF150 [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551510|gb|EFM39465.1| protein of hypothetical function DUF150 [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 153 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 76/159 (47%), Gaps = 13/159 (8%) Query: 21 LAGDISSVIQPVIE---EMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAI 76 ++ I + + ++ + V + ++E + L+I +++ DG+MT+ DC +LS I Sbjct: 1 MSKKIEQITEELVLRVLPEEYEMVDVEYVKEAGEMYLRILIDK-DGSMTIDDCVKLSGII 59 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD-KQKLIGKI 135 +D ++ I+ Y LE+SSPG+DR + + DF+R G V ++ ++ + + Sbjct: 60 GDEIDKKDYIKDAYNLEISSPGLDRTLKKDRDFVREKGKDVEVKLFKKDEKYGKEFVAVL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G E G + ++E ++I + L + Sbjct: 120 EGLDENGNVV-------FVIDEEVVSIDKKEIAKINLYL 151 >gi|319793510|ref|YP_004155150.1| hypothetical protein Varpa_2847 [Variovorax paradoxus EPS] gi|315595973|gb|ADU37039.1| protein of unknown function DUF150 [Variovorax paradoxus EPS] Length = 215 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 72/190 (37%), Gaps = 45/190 (23%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVE--------------RDDGNMTLRDCE 70 + +++ + + + V+I LL++ ++ + +T+ DCE Sbjct: 3 LQQIVEQTVAGLGYDLVEIE--RSAGGLLRVTIDLPWTAPTSEAVAAGVPEPFVTVEDCE 60 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD--- 127 ++++ + L+V+ + + RLEVSSPGIDRP+ + DF R+ G V+ + G Sbjct: 61 KVTRQLQFALEVDGV--DYKRLEVSSPGIDRPLRNEQDFERFVGSVIDLTLKAPMGAAAA 118 Query: 128 ------KQKLIGKIMGTSETG---------FFL---------EKEKRGEKDMNELQIAIS 163 ++K G + + +K + + Sbjct: 119 GQVSATRKKFRGTLERAEKAEGADAAPGWQIVWSDAPKPKPGQKVSKKRAPAPLHALGFV 178 Query: 164 FDSLLSARLI 173 D L ARL Sbjct: 179 LDELRDARLA 188 >gi|302542144|ref|ZP_07294486.1| conserved hypothetical protein [Streptomyces hygroscopicus ATCC 53653] gi|302459762|gb|EFL22855.1| conserved hypothetical protein [Streptomyces himastatinicus ATCC 53653] Length = 168 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 77/153 (50%), Gaps = 9/153 (5%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + +++P++ ++ + K +L+I V+ DDG + L C ELS+AIS L Sbjct: 6 SERLRGLLEPLVSARDLDLEEVEVTPAGKRRVLRIVVDSDDG-VQLDTCAELSRAISQAL 64 Query: 81 DVENIIEG-HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 D + + Y LEV+SPG +RP++ + + R G ++ ++V + +LI +I+ Sbjct: 65 DESDAMGQTPYVLEVTSPGAERPLIEQRHYRRATGRLMKAQLV----EGGELIARIIAVD 120 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + G LE G K ++F + AR+ Sbjct: 121 DEGLDLEV--PGVKGRKPTTRRLAFKEISKARV 151 >gi|302522223|ref|ZP_07274565.1| conserved hypothetical protein [Streptomyces sp. SPB78] gi|318062644|ref|ZP_07981365.1| ribosome maturation protein RimP [Streptomyces sp. SA3_actG] gi|318081084|ref|ZP_07988416.1| ribosome maturation protein RimP [Streptomyces sp. SA3_actF] gi|302431118|gb|EFL02934.1| conserved hypothetical protein [Streptomyces sp. SPB78] Length = 183 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 75/153 (49%), Gaps = 9/153 (5%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + +++P++ ++++ + +LQI V+ D G ++L C ELS+ IS +L Sbjct: 6 SERLRELVEPLVTARDLDLEEVTVTPAGRRRVLQIVVDGDSG-VSLDTCAELSREISTVL 64 Query: 81 DVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 D + + E Y LEV+SPG DRP+ ++R G +V ++ + +L+ +++ Sbjct: 65 DDTDAMGENEYVLEVTSPGADRPLTAHRHYVRATGRLVRFQL----AEGGELVARLLKAD 120 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + G LE + ++ + AR+ Sbjct: 121 DAGLDLEVPGVKGRKPTSRRLEFP--EISKARV 151 >gi|300173096|ref|YP_003772262.1| hypothetical protein LEGAS_0795 [Leuconostoc gasicomitatum LMG 18811] gi|299887475|emb|CBL91443.1| conserved hypothetical protein [Leuconostoc gasicomitatum LMG 18811] Length = 158 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 71/158 (44%), Gaps = 14/158 (8%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDD-GNMTLRDCEELSQAISP 78 + I +I P+++ ++ +E +L+I +++ + +T+ D +Q ++ Sbjct: 5 VEQRIIELITPIVDRRKELLWDLTYTKEGGQKVLRILLDKPNHQFITMADLTAFTQEVNE 64 Query: 79 ILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWN--GHVVACEIVLSSGDKQKLIGK 134 +LD + I Y L++SSPG DRP+ + F + + ++ ++K GK Sbjct: 65 LLDTSDPDPIPEAYLLDISSPGADRPLKQPWHFKWAQDGNENILMSLFVAKNGQKKWQGK 124 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 I ++ G L + +I ++FD + A L Sbjct: 125 IKTLTDNGLVL--------LTDHGEIILNFDEIAKAVL 154 >gi|227499285|ref|ZP_03929397.1| protein of hypothetical function DUF150 [Anaerococcus tetradius ATCC 35098] gi|227218636|gb|EEI83870.1| protein of hypothetical function DUF150 [Anaerococcus tetradius ATCC 35098] Length = 147 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 6/143 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 M L + + + IE M + V I KN +L F+ +G +T+ DCE+ S + Sbjct: 1 MNLTNRLKEIFERDIESMGYELVDIEFKGGKNNKVLTFFIYNKEG-ITIEDCEKASAFLD 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD +II+ Y LEVSS + RP+ D R ++ ++ D + + K+ Sbjct: 60 TKLDEIDIIKDSYYLEVSSQDLSRPLKTDRDLERNKDELLKVKLK----DGEVFLAKLKE 115 Query: 138 TSETGFFLEKEKRGEKDMNELQI 160 + + + E + +++ + +I Sbjct: 116 ILDDSYIFDIEDKEAREVRKDEI 138 >gi|297562527|ref|YP_003681501.1| hypothetical protein Ndas_3595 [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846975|gb|ADH68995.1| protein of unknown function DUF150 [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 160 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 69/137 (50%), Gaps = 7/137 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 G I+ +++PV+ E + L K +L++ V+ D+G + L E+SQ Sbjct: 1 MGAQAREERIAELLEPVLAEAGLDLEAVELTPAGKRRVLRVVVDSDNG-VDLDTVGEVSQ 59 Query: 75 AISPILDVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 ++ +LD +++ Y LEV+SPG+DRP+ + + R G +V + + K+ G Sbjct: 60 EVNTLLDSSDVMGAQPYVLEVTSPGVDRPLTQPRHWRRSRGRLVIASL----AEGGKVTG 115 Query: 134 KIMGTSETGFFLEKEKR 150 ++ G + G L+ E + Sbjct: 116 RVTGADDDGVTLDVEGQ 132 >gi|255530055|ref|YP_003090427.1| hypothetical protein Phep_0139 [Pedobacter heparinus DSM 2366] gi|255343039|gb|ACU02365.1| protein of unknown function DUF150 [Pedobacter heparinus DSM 2366] Length = 154 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 80/158 (50%), Gaps = 7/158 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 M + ++ +++ I + + + N L I V+ D+G ++++DC +S+ + Sbjct: 1 MQVEKRVTELVEEKISDRP-ELFLVEVKMLPNNKLIIHVDGDEG-ISIQDCAAISRHVGF 58 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 L+ EN IE Y LEVSSPG+ P+ K +L+ G ++ ++ + GK++ Sbjct: 59 HLEEENTIEKAYNLEVSSPGVGEPLKLKRQYLKNVGRELSVKL----DGGEVKEGKLLAA 114 Query: 139 SETGFFLEKE-KRGEKDMNELQIAISFDSLLSARLIVT 175 E G +E + K K + ++ I F+ ++ +++++ Sbjct: 115 DEQGITIEAKIKEKGKKVQLVETRIDFNKIIETKVLIS 152 >gi|108804246|ref|YP_644183.1| hypothetical protein Rxyl_1409 [Rubrobacter xylanophilus DSM 9941] gi|122381798|sp|Q1AW57|RIMP_RUBXD RecName: Full=Ribosome maturation factor rimP gi|108765489|gb|ABG04371.1| protein of unknown function DUF150 [Rubrobacter xylanophilus DSM 9941] Length = 152 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 12/150 (8%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 +S ++ + E V+ + LL + V+R+ G + C + ++P L+ Sbjct: 9 DRLSEAVERALPE-GTELVEARF--SRGPLLTLLVDREGGPVDHEFCARIISIVAPALEE 65 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E +EVSSPGI+RP+ R S F R+ G V + ++ G I ++ G Sbjct: 66 EGY---SGMIEVSSPGIERPLTRPSHFRRFIGRRVRVRVGEPVDGRRNFTGVIERVADAG 122 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARL 172 F L + GE ++ + F S+ A L Sbjct: 123 FVLRLSEDGE------EVELPFGSVTRAHL 146 >gi|149277311|ref|ZP_01883453.1| hypothetical protein PBAL39_10486 [Pedobacter sp. BAL39] gi|149232188|gb|EDM37565.1| hypothetical protein PBAL39_10486 [Pedobacter sp. BAL39] Length = 154 Score = 114 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 79/158 (50%), Gaps = 7/158 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 M + ++ +I+ I + + + N L I V+ D+G ++++DC +S+ + Sbjct: 1 MQVEKRVTELIEEKISDRP-ELFLVEVKMLPNNKLIIHVDGDEG-ISIQDCAAISRHVGF 58 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 L+ EN IE Y LEVSSPG+ P+ K + + G V+ ++ + GK++ Sbjct: 59 HLEEENTIEKAYNLEVSSPGVGEPLKLKRQYDKNIGREVSVKLS----GGEVKEGKLLSV 114 Query: 139 SETGFFLEKE-KRGEKDMNELQIAISFDSLLSARLIVT 175 + G +E + K K ++ ++ F+S+ +++++ Sbjct: 115 DDKGIIIEAKVKEKGKKAQLVETSVDFNSITETKVLIS 152 >gi|159036963|ref|YP_001536216.1| hypothetical protein Sare_1324 [Salinispora arenicola CNS-205] gi|259586188|sp|A8M743|RIMP_SALAI RecName: Full=Ribosome maturation factor rimP gi|157915798|gb|ABV97225.1| protein of unknown function DUF150 [Salinispora arenicola CNS-205] Length = 219 Score = 114 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 66/133 (49%), Gaps = 8/133 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + V++PV++ + +S+ + ++Q+ V+ DG + L ++S+A+S LD Sbjct: 40 ARLHQVVEPVVQGAGYDLEDLSVSRAGRRHVVQVIVD-ADGGVDLDAVADVSRAVSAALD 98 Query: 82 VE-----NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV-LSSGDKQKLIGKI 135 +I+ G Y+LEVSSPG+ RP+ + R G +V + +++ G++ Sbjct: 99 AAEEVGGDIVAGEYQLEVSSPGVARPLTLPRHWRRNTGRLVRFTVRGGPEAVDRQVTGRV 158 Query: 136 MGTSETGFFLEKE 148 + + +E + Sbjct: 159 VEADDERVVVETD 171 >gi|268316866|ref|YP_003290585.1| hypothetical protein Rmar_1307 [Rhodothermus marinus DSM 4252] gi|262334400|gb|ACY48197.1| protein of unknown function DUF150 [Rhodothermus marinus DSM 4252] Length = 160 Score = 114 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 39/160 (24%), Positives = 81/160 (50%), Gaps = 10/160 (6%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQA 75 G L I + ++ V++ +F + + + + +++IF++ D G +LRD E+LS+ Sbjct: 7 GTPALIEQIRARVEEVLQGTTFFLIDVVVRGRRGAHVVEIFIDGDRGP-SLRDLEQLSRE 65 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV-LSSGDKQKLIGK 134 I +LD ++++ G Y L VSSPG+DRP+V + + G + ++V ++ ++L G Sbjct: 66 IGFLLDSDDLLPGPYTLNVSSPGVDRPLVHPRQYPKHVGRELEVKLVAVADAPAERLRGT 125 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + L + Q + ++ + SAR+ + Sbjct: 126 LQRADAEAIELRL-------PDGSQRRLRYEEIQSARVCL 158 >gi|329947838|ref|ZP_08294770.1| hypothetical protein HMPREF9056_02685 [Actinomyces sp. oral taxon 170 str. F0386] gi|328523462|gb|EGF50560.1| hypothetical protein HMPREF9056_02685 [Actinomyces sp. oral taxon 170 str. F0386] Length = 165 Score = 114 bits (287), Expect = 6e-24, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 74/170 (43%), Gaps = 11/170 (6%) Query: 9 SKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGN--MT 65 + ++PR D LA ++ ++ PV+ + + ++++FV+ DG + Sbjct: 2 AAHDPRKRSD-ALARSLTDLLAPVVADAGLHLEAVETTRAGRYSVVRVFVDLADGPGDLD 60 Query: 66 LRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS 125 + ++ A+S LD + ++G Y LEVS+PG +R + F R GH Sbjct: 61 IDTLGPVTAAVSQALDESDPVKGQYTLEVSTPGAERELSTLRHFRRAVGHSARVRTAD-- 118 Query: 126 GDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 ++L G + G +++ ++ I+ + AR++VT Sbjct: 119 ---EELTGVVTAADAGGD--NDAGLVSIEVDGVERRIALGDIAEARMVVT 163 >gi|116669974|ref|YP_830907.1| hypothetical protein Arth_1413 [Arthrobacter sp. FB24] gi|259585698|sp|A0JUT7|RIMP_ARTS2 RecName: Full=Ribosome maturation factor rimP gi|116610083|gb|ABK02807.1| protein of unknown function DUF150 [Arthrobacter sp. FB24] Length = 205 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 12/159 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDD---GNMTLRDCEELSQAIS 77 A + ++++P ++ +S+ + N ++ + V+ G ++L E+S+ +S Sbjct: 28 AERVRALLEPSVQAHRLYLEDVSIHVAGANRVVHVVVDLPQEETGGVSLDVIAEISKELS 87 Query: 78 PILDVEN-IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 ILD + Y LEVSSPG+ RP+ + R G +V ++ + L G+I Sbjct: 88 GILDGDPSYDSRPYDLEVSSPGVGRPLTEPRHWHRARGRMVKVNVIQ----GENLTGRIQ 143 Query: 137 GTSETGFFLEKE---KRGEKDMNELQIAISFDSLLSARL 172 + G L E K+G K I FD + + ++ Sbjct: 144 SVDDDGVTLVPEIAAKKGMKPKQGEPEKIPFDRIRNGKV 182 >gi|296129354|ref|YP_003636604.1| protein of unknown function DUF150 [Cellulomonas flavigena DSM 20109] gi|296021169|gb|ADG74405.1| protein of unknown function DUF150 [Cellulomonas flavigena DSM 20109] Length = 186 Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 75/186 (40%), Gaps = 14/186 (7%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVE---RDDGNMTLRDCEE 71 G A + V++ + + + ++++ V+ D G + L + Sbjct: 1 MGAPATAPRVREVVETAVTGAGLLLDGLEVAGSGRSTVVRVTVDLADDDPGTLDLDRVGD 60 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +++A+S LD +++ G Y LEV SPG +RP+ + R G V D L Sbjct: 61 VTRAVSDALDAADVLPGAYTLEVGSPGAERPLTLARHWRRARGRTVLVRRT----DGTTL 116 Query: 132 IGKIMGTSETG------FFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 G++ G ++ + +G + + + +++D + AR+ V +R + Sbjct: 117 TGRLDGVADGDAPELVVVPVTDPGKGRRPVVGAPVTLAWDDVRDARVQVDLAAVREADEE 176 Query: 186 YGSYAG 191 G G Sbjct: 177 AGPQDG 182 >gi|119963357|ref|YP_947325.1| uncharacterized Bcr YhbC family protein [Arthrobacter aurescens TC1] gi|259585697|sp|A1R513|RIMP_ARTAT RecName: Full=Ribosome maturation factor rimP gi|119950216|gb|ABM09127.1| putative Uncharacterized BCR YhbC family protein [Arthrobacter aurescens TC1] Length = 203 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 40/180 (22%), Positives = 76/180 (42%), Gaps = 24/180 (13%) Query: 2 ESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERD 60 ST +H+ E R+ ++++P + +S+ + + + + V+ Sbjct: 16 NSTATIHNPEESRL----------KALLEPAVLASRLYLEDVSIHVAGSHRTVHVVVDLP 65 Query: 61 D---GNMTLRDCEELSQAISPILDVENIIEG--HYRLEVSSPGIDRPMVRKSDFLRWNGH 115 G ++L ++S+ +S ILD + + Y LEVSSPG+ RP+ + R G Sbjct: 66 QEETGGVSLDAIADVSRGLSDILD-NDPHDDGRPYDLEVSSPGVSRPLTEPRHWHRARGR 124 Query: 116 VVACEIVLSSGDKQKLIGKIMGTSETGFFLEKE---KRGEKDMNELQIAISFDSLLSARL 172 +V ++ L+G+I + L E K+G K I I FD + ++ Sbjct: 125 MVRVNVIQGD----NLLGRIASVGDDAVTLIPEHEVKKGMKPKQGEPITIPFDRIRQGKV 180 >gi|160902005|ref|YP_001567586.1| hypothetical protein Pmob_0529 [Petrotoga mobilis SJ95] gi|189040239|sp|A9BH33|RIMP_PETMO RecName: Full=Ribosome maturation factor rimP gi|160359649|gb|ABX31263.1| protein of unknown function DUF150 [Petrotoga mobilis SJ95] Length = 157 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 37/159 (23%), Positives = 70/159 (44%), Gaps = 7/159 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELS 73 + + + I V ++ I + KN +L++ +++ DG +++ DCE S Sbjct: 1 MLTNKEIKQLIWEKADNVASKLGLEIFDILIKGSNKNKILEVVIDKADGYVSIGDCERFS 60 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 +A P LD ++ + Y L VSSPG+DR + K+D+ R+ G + + +IG Sbjct: 61 KAFDPWLDEIDLFDKSYELVVSSPGLDRKLRGKADYERFKGKLAKFILKGKETKHPVVIG 120 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 I E + ++ G+ I + + A L Sbjct: 121 YIDEILEDQIKITEKDSGKL------FNIDLNEIDKANL 153 >gi|291532988|emb|CBL06101.1| Uncharacterized protein conserved in bacteria [Megamonas hypermegale ART12/1] Length = 112 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 51/87 (58%), Gaps = 1/87 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + + + ++ + V + ++E++ L+++++++ G + L DC+E+S + L Sbjct: 5 VEEAVEKIAEEILANTDYELVDVEYVKERDWFLRVYIDKE-GGIGLDDCQEVSGLLDEKL 63 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKS 107 + NII Y LEVSSPG+DR + ++ Sbjct: 64 EELNIINDRYILEVSSPGLDRALKKEK 90 >gi|295836232|ref|ZP_06823165.1| conserved hypothetical protein [Streptomyces sp. SPB74] gi|295825917|gb|EFG64551.1| conserved hypothetical protein [Streptomyces sp. SPB74] Length = 183 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 75/153 (49%), Gaps = 9/153 (5%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + +++P++ +I++ + +LQI V+ D G ++L C ELS+ IS +L Sbjct: 6 SERLREILEPLVTARDLDLEEITVTPAGRRRVLQIVVDGDTG-VSLDTCAELSREISTVL 64 Query: 81 DVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 D + + E Y LEV+SPG DRP+ ++R G +V ++ + +L+ +++ Sbjct: 65 DDTDAMGENEYVLEVTSPGADRPLSAHRHYVRATGRLVRFQL----AEGGELVARLLKAD 120 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + G LE + ++ + AR+ Sbjct: 121 DAGLDLEVPGVKGRKPTSRRLEFP--EISKARV 151 >gi|271963646|ref|YP_003337842.1| hypothetical protein Sros_2114 [Streptosporangium roseum DSM 43021] gi|270506821|gb|ACZ85099.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021] Length = 166 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 15/154 (9%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++PV+ +++ K LL++ V+R DG ++L D E+S A+S LD Sbjct: 8 DRLIKLLEPVVGAEGLDLEDVTVTPAGKRRLLRVVVDR-DGGVSLDDVAEVSLAVSATLD 66 Query: 82 VENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 ++ + Y LEVSSPG+DRP+ + R +V ++ D + G+I+ T E Sbjct: 67 ADDAMGATPYVLEVSSPGVDRPLTEPRHWRRAVKRLVKADLR----DGTSVEGRIVATDE 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 TG L D+ I ++ L R+ V Sbjct: 123 TGVEL--------DIAGAPRRIDYEDLTRGRVQV 148 >gi|332665271|ref|YP_004448059.1| ribosome maturation factor rimP [Haliscomenobacter hydrossis DSM 1100] gi|332334085|gb|AEE51186.1| Ribosome maturation factor rimP [Haliscomenobacter hydrossis DSM 1100] Length = 158 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSF-RSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I +++Q +E F I + +E L++FV+ D G M C+ +S+ + Sbjct: 2 ITEKIEALLQEKYQEPEFADCFTIEIKQEGGNRLEVFVDSDSG-MQFEKCQRISRFLEAH 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + Y LEVSSPGI+RP+ +LR G + + G + + Sbjct: 61 LDTNGWLGEVYTLEVSSPGIERPLKFARQYLRNIGRTFEVRLSA----GETKTGVLKAVN 116 Query: 140 ETGFFLEKE---KRGEKDMNE-LQIAISFDSLLSA 170 LE+E K G+K+M +Q I F+ + A Sbjct: 117 PESIVLEEEIKWKEGKKNMKGTVQTVIPFEHIAKA 151 >gi|154509103|ref|ZP_02044745.1| hypothetical protein ACTODO_01620 [Actinomyces odontolyticus ATCC 17982] gi|153798737|gb|EDN81157.1| hypothetical protein ACTODO_01620 [Actinomyces odontolyticus ATCC 17982] Length = 156 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 68/153 (44%), Gaps = 15/153 (9%) Query: 22 AGDISSVIQPVIEEMSFRSVQI-SLLEEKNLLLQIFVERD--DGNMTLRDCEELSQAISP 78 G + ++ PV+ + + + LL++ VE G + ++S+A+S Sbjct: 7 EGPLEELLAPVVAQSGLELDSVIRSRSDAMPLLRVIVEAPIGAGGIDSDTLADVSRAVSK 66 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LDV + I+G Y LEVS+PG +R + + ++R G +V ++ + G+++ Sbjct: 67 ALDVADPIDGEYLLEVSTPGAERELTKVGHWMRQIGRLVRIKLRA----GGYVSGRVVAA 122 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 +ET ++ + I + + AR Sbjct: 123 NETSATIDVDGETTI--------IDYQDMRKAR 147 >gi|269127539|ref|YP_003300909.1| hypothetical protein Tcur_3333 [Thermomonospora curvata DSM 43183] gi|268312497|gb|ACY98871.1| protein of unknown function DUF150 [Thermomonospora curvata DSM 43183] Length = 205 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 37/150 (24%), Positives = 72/150 (48%), Gaps = 11/150 (7%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + +++ ++ P+ ++ + + L++I V+ DG +TL D LSQA+S Sbjct: 35 VQAELTRLVGPLAAAQGLDLEELDVKPAGRRRLVRIVVD-ADGGVTLEDTATLSQAVSAA 93 Query: 80 LDVENIIEGH-YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LD +++ Y LEV+SPG+DRP+ + R G +V + D ++ G+++ Sbjct: 94 LDDTDVMGEAPYVLEVTSPGVDRPLTEPRHWRRATGRLV----RAALADGGQVEGRVVAA 149 Query: 139 SETGFFLEKEKR----GEKDMNELQIAISF 164 E LE R G ++ ++ + F Sbjct: 150 DEEAVVLEVAGRRRRFGHGELGRGRVQVEF 179 >gi|114566430|ref|YP_753584.1| hypothetical protein Swol_0896 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318498|sp|Q0AYJ1|RIMP_SYNWW RecName: Full=Ribosome maturation factor rimP gi|114337365|gb|ABI68213.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 139 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 63/125 (50%), Gaps = 4/125 (3%) Query: 41 VQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGI 99 V I +E K L++F+++D+G + L C + ++AI D + I LEVSSPG+ Sbjct: 14 VNIEYRKENKEQFLRVFIDKDNG-VDLDMCSQANRAIKESFDEQEIPYD--YLEVSSPGL 70 Query: 100 DRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQ 159 DR + ++ D+ R++G+ V + S Q++ G ++G +E E K E+ Sbjct: 71 DRVLKKERDWERFSGYRVRIKTRKSFPGPQRITGILLGFDSENIAVELEGELLKVPREMI 130 Query: 160 IAISF 164 I Sbjct: 131 TIIRL 135 >gi|307720624|ref|YP_003891764.1| hypothetical protein Saut_0703 [Sulfurimonas autotrophica DSM 16294] gi|306978717|gb|ADN08752.1| protein of unknown function DUF150 [Sulfurimonas autotrophica DSM 16294] Length = 150 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 41/150 (27%), Positives = 75/150 (50%), Gaps = 19/150 (12%) Query: 29 IQPVIEEMSFRSVQISLLEEKNLLL-QIFV---ERDDG---NMTLRDCEELSQAISPILD 81 I+ V++ + ++ E + + ++ V + ++G ++L +C EL+ ISP+LD Sbjct: 7 IESVVKSVGLVLYDTVIVNENDETIFRVSVISNDVEEGKQKGVSLDECVELTHLISPLLD 66 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 V I G YRLEV SPGI+R + F + G V+ + +K+KL GK++ Sbjct: 67 VTPPISGEYRLEVGSPGIERKLTTLDHFKKSVGENVSLLL----DEKEKLKGKLVKVEGN 122 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 F+EKE + + F+++ A+ Sbjct: 123 KLFVEKEGQIH--------EVDFNAVKKAK 144 >gi|284044672|ref|YP_003395012.1| hypothetical protein Cwoe_3218 [Conexibacter woesei DSM 14684] gi|283948893|gb|ADB51637.1| protein of unknown function DUF150 [Conexibacter woesei DSM 14684] Length = 139 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 67/152 (44%), Gaps = 18/152 (11%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 I I+ + + V++ L E +++F++ DG ++L CE ++ ++ Sbjct: 2 SRIQEQIETTLSKTEPE-VEVLLAEVLGGTTVRLFIDHPDG-VSLELCERVTHHLAG--- 56 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 I Y LEVSSPG +RP+ + + F R+ G + G + G+++G +E+ Sbjct: 57 ----IRERYGLEVSSPGSERPLTKPAHFRRYLGQRARVRTRGAHGGQGSFTGELVGANES 112 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E +AI + + + L+ Sbjct: 113 EVTIAAE--------TGVVAIPYTEIKRSNLV 136 >gi|317121852|ref|YP_004101855.1| hypothetical protein Tmar_1015 [Thermaerobacter marianensis DSM 12885] gi|315591832|gb|ADU51128.1| protein of unknown function DUF150 [Thermaerobacter marianensis DSM 12885] Length = 153 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 64/145 (44%), Gaps = 10/145 (6%) Query: 31 PVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGH 89 P+ E + ++ E + LQ V+R G +T+ +C SQA+ P+L ++ Sbjct: 16 PLAEARGLVLLDVAYRREGRRWFLQCVVDRP-GGVTMDECAAFSQALDPVLAGVEGLDED 74 Query: 90 YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEK 149 +EV SPG+DR + +F + G V +++ +G++ G + + E+ Sbjct: 75 VVVEVMSPGLDRTLRNDREFDWFRGREVEVATFRPVEGRRRFVGRLEGLEDGDVVITDEE 134 Query: 150 RGEKDMNELQIAISFDSLLSARLIV 174 + I D++ A+L V Sbjct: 135 GAHR--------IPRDAVAKAQLYV 151 >gi|293192165|ref|ZP_06609377.1| hypothetical protein HMPREF0970_01722 [Actinomyces odontolyticus F0309] gi|292820361|gb|EFF79353.1| hypothetical protein HMPREF0970_01722 [Actinomyces odontolyticus F0309] Length = 156 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 66/153 (43%), Gaps = 15/153 (9%) Query: 22 AGDISSVIQPVIEEMSFRSVQI-SLLEEKNLLLQIFVERD--DGNMTLRDCEELSQAISP 78 G + ++ PV+ + + + LL++ VE G + E+S+A+S Sbjct: 7 EGPLEELLTPVVAQSGLELDSVIRSRSDAMPLLRVIVEAPIGAGGIDSDTLAEVSRAVSK 66 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LD + I+G Y LEVS+PG +R + + ++R G +V ++ + G+++ Sbjct: 67 ALDAADPIDGEYLLEVSTPGAERELTKVGHWMRQIGRLVRIKLRA----GGYVSGRVVAA 122 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 ET ++ + I + + AR Sbjct: 123 DETSATIDVDGETTI--------IDYQDMRKAR 147 >gi|291279909|ref|YP_003496744.1| hypothetical protein DEFDS_1528 [Deferribacter desulfuricans SSM1] gi|290754611|dbj|BAI80988.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 158 Score = 111 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 66/156 (42%), Gaps = 11/156 (7%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISP 78 + + S ++ ++ I EK +L+IF+E D+ + L DC +S+ +S Sbjct: 7 SIKEKVKSYLEENVKNEFLDIYDIQFRREKSGWVLRIFIEGDN--VGLSDCISVSKQVSK 64 Query: 79 ILDVENIIE-GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG-DKQKLIGKIM 136 LD +II +Y LEVS+PG R + +F ++ G ++V ++ G I Sbjct: 65 WLDEVDIIPYENYNLEVSTPGATREIRNLDEFKKYIGKYCKIKLVEHDKYGRKNYKGYIK 124 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 L E+ + + I + + A L Sbjct: 125 NVEGDIITLFVEEENK------EFEIDYYLVKKANL 154 >gi|299530200|ref|ZP_07043626.1| hypothetical protein CTS44_05471 [Comamonas testosteroni S44] gi|298721857|gb|EFI62788.1| hypothetical protein CTS44_05471 [Comamonas testosteroni S44] Length = 182 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 70/171 (40%), Gaps = 36/171 (21%) Query: 35 EMSFRSVQISLLEEKNLLLQIFVERD------------DGNMTLRDCEELSQAISPILDV 82 + + V+I LL+I ++ + +T+ DCE++++ + L+V Sbjct: 3 GLGYDLVEIE--RSAGGLLRITIDLPWQAPEEGAPELPEQFVTVEDCEKVTRQLQFALEV 60 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG---------DKQKLIG 133 + + RLEVSSPGIDR + + DF+R+ G V + G +++K G Sbjct: 61 DG--ADYARLEVSSPGIDRLLRHEQDFIRFEGSEVDLTLKAPIGAAGGDKINANRKKFRG 118 Query: 134 KIMGTSETGFFLEKEK-----------RGEKDMNELQIAISFDSLLSARLI 173 + T E G+ + + + + + D L ARL Sbjct: 119 TLERTEEGGWQIVWSDEPPPKPGVRVSKKREPAPLNAMGFTLDELREARLA 169 >gi|210634028|ref|ZP_03297946.1| hypothetical protein COLSTE_01864 [Collinsella stercoris DSM 13279] gi|210158972|gb|EEA89943.1| hypothetical protein COLSTE_01864 [Collinsella stercoris DSM 13279] Length = 164 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 9/125 (7%) Query: 49 KNLLLQIFVERDDG-NMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKS 107 K +++ +++ +G + L + + +S ++ + I G Y LEVSSPG+ RP+ R S Sbjct: 35 KAPCIRVRLDKLEGDPINLDEVTAQTAWVSDTVEALDPIAGAYTLEVSSPGMKRPLRRPS 94 Query: 108 DFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSL 167 DF R+ G V + ++ G I T++T ++ E E + ISFD + Sbjct: 95 DFARFAGEEVELTTT-AMEGRRSYKGVIAETTDTAVTIQPEG-------EEAVTISFDDV 146 Query: 168 LSARL 172 L Sbjct: 147 KKCTL 151 >gi|312130304|ref|YP_003997644.1| hypothetical protein Lbys_1583 [Leadbetterella byssophila DSM 17132] gi|311906850|gb|ADQ17291.1| protein of unknown function DUF150 [Leadbetterella byssophila DSM 17132] Length = 151 Score = 110 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 80/158 (50%), Gaps = 10/158 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 M L + +++ +I + + V+I++ + K + IF++ D G +T+ C E+S+ + Sbjct: 1 MSLKDTVIKLVEDLIRDTDYYVVEIAVSDSKIRRKVSIFLDSDAG-ITIDQCTEVSRKLG 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 L E +I+ + LEVSSPG D P+ + +++ G + L ++ GK++ Sbjct: 60 LQL--EEVIDEAFTLEVSSPGADSPLKFERQYVKNIGRSLKI---LKVDGS-EIKGKLVS 113 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +E E +K + +A+S D + A++I++ Sbjct: 114 VENGSITIETE--AKKKVKSETVALSLDEIKEAKVIIS 149 >gi|220912194|ref|YP_002487503.1| hypothetical protein Achl_1424 [Arthrobacter chlorophenolicus A6] gi|219859072|gb|ACL39414.1| protein of unknown function DUF150 [Arthrobacter chlorophenolicus A6] Length = 222 Score = 110 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 70/160 (43%), Gaps = 14/160 (8%) Query: 22 AGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDD---GNMTLRDCEELSQAIS 77 A + ++++P + + + + + ++ + V+ G ++L ++S+ +S Sbjct: 45 ADRLRALLEPSVLANRLYLEDVVINVAGSHRVVHVVVDLPQEETGGVSLDVIADISKVLS 104 Query: 78 PILDVENIIEG--HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + Y LEVSSPG+ RP+ + R G + +++ + + G+I Sbjct: 105 DALD-NDPGADTRPYDLEVSSPGVGRPLTEPRHWHRAKGRIATVKVIQ----GENVTGRI 159 Query: 136 MGTSETGFFLEKE---KRGEKDMNELQIAISFDSLLSARL 172 + G L E K+G K + + FD + + ++ Sbjct: 160 QSVDDGGVTLVPEIAVKKGMKPKQGDPVKLPFDRIRTGKV 199 >gi|259585703|sp|B8HG52|RIMP_ARTCA RecName: Full=Ribosome maturation factor rimP Length = 205 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 70/160 (43%), Gaps = 14/160 (8%) Query: 22 AGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDD---GNMTLRDCEELSQAIS 77 A + ++++P + + + + + ++ + V+ G ++L ++S+ +S Sbjct: 28 ADRLRALLEPSVLANRLYLEDVVINVAGSHRVVHVVVDLPQEETGGVSLDVIADISKVLS 87 Query: 78 PILDVENIIEG--HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + Y LEVSSPG+ RP+ + R G + +++ + + G+I Sbjct: 88 DALD-NDPGADTRPYDLEVSSPGVGRPLTEPRHWHRAKGRIATVKVIQ----GENVTGRI 142 Query: 136 MGTSETGFFLEKE---KRGEKDMNELQIAISFDSLLSARL 172 + G L E K+G K + + FD + + ++ Sbjct: 143 QSVDDGGVTLVPEIAVKKGMKPKQGDPVKLPFDRIRTGKV 182 >gi|297571192|ref|YP_003696966.1| hypothetical protein Arch_0611 [Arcanobacterium haemolyticum DSM 20595] gi|296931539|gb|ADH92347.1| protein of unknown function DUF150 [Arcanobacterium haemolyticum DSM 20595] Length = 156 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 72/158 (45%), Gaps = 17/158 (10%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLR--DCEELSQAI 76 ++ I+ ++ PV++E + ++ K+ ++++ V+ G + ++S+A+ Sbjct: 4 NVSAQIAQLLDPVVQESGLWLETVRVVGAGKHTVVRVTVDLPSGPGGVDSTQLMDVSRAV 63 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 S +LD ++ I+G Y LEVS+PG R + + F R G VA ++ D K +I+ Sbjct: 64 SVVLDEKDPIKGAYTLEVSTPGATRELSEERHFSRAIGRKVAFQLS----DDTKFTERIV 119 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ L I+ + A +++ Sbjct: 120 DVADGVITL----------AGQPGTIAVVDVARAHVVL 147 >gi|328950380|ref|YP_004367715.1| Ribosome maturation factor rimP [Marinithermus hydrothermalis DSM 14884] gi|328450704|gb|AEB11605.1| Ribosome maturation factor rimP [Marinithermus hydrothermalis DSM 14884] Length = 147 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 7/123 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVER-DDGNMTLRDCEELSQAISPILD 81 ++ +VI+ V+ + + ++++L K +L + +ER D+ ++ D E SQ IS LD Sbjct: 2 ELWNVIEAVVRPLGYEVLEVTLKGGGKTRVLTVRLERADEQPISFADLERASQVISLELD 61 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + I G YRLEV SPG DRP++ F R+ G + D+ + G+I+ Sbjct: 62 RLDPIPGAYRLEVESPGPDRPLITARHFERFMGLKAKVQ-----SDEGRFTGRIVRVEGD 116 Query: 142 GFF 144 Sbjct: 117 VVT 119 >gi|320528333|ref|ZP_08029495.1| hypothetical protein HMPREF9430_01620 [Solobacterium moorei F0204] gi|320131247|gb|EFW23815.1| hypothetical protein HMPREF9430_01620 [Solobacterium moorei F0204] Length = 153 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 69/156 (44%), Gaps = 5/156 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 M ++ + QPV +E R +I L + LQ+ ++ D + L C E+S+ + Sbjct: 1 MENIDKLTKLFQPVFDECHVRLYEIVWLGNE-KTLQVAIDNDAHAIDLDICAEVSEKLGV 59 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LD + I+ Y LEV SPG +R + ++F + + E+ + ++ G + Sbjct: 60 VLDKYDPIKEEYSLEVCSPGAEREIKDYAEFEQLVDEYIYVELKEPFKNMVEITGYVRSA 119 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 S LE + K I +++ ARL + Sbjct: 120 SVDAIELEYRDKAVKRTA----TIEKNNIRFARLAI 151 >gi|300772909|ref|ZP_07082778.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33861] gi|300759080|gb|EFK55907.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33861] Length = 156 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 82/159 (51%), Gaps = 7/159 (4%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + + ++ I + +S+ + N +L+I V+ D G + + DC ++S+ + Sbjct: 2 KTKVEKRVEELVLEKIGDRE-DLFIVSIKMQSNGVLEILVDGDSG-IAIDDCVKISRHVG 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 L+ EN+IE YRLEVSSPGID P++ + + G V + + + +K GK++ Sbjct: 60 FHLEEENVIETAYRLEVSSPGIDSPLIMIRQYKKNIGRNVRVK----NHEGEKREGKLLN 115 Query: 138 TSETGFFLEKEKRGEKDMN-ELQIAISFDSLLSARLIVT 175 +E+ +E+ K+ + ++ I F+ + +++++ Sbjct: 116 VTESNITIEESKKEKGKKAVPVESVIPFEQIKETKVLIS 154 >gi|227875843|ref|ZP_03993969.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243] gi|269977479|ref|ZP_06184451.1| conserved hypothetical protein [Mobiluncus mulieris 28-1] gi|306819124|ref|ZP_07452838.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239] gi|307700024|ref|ZP_07637073.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16] gi|227843591|gb|EEJ53774.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243] gi|269934395|gb|EEZ90957.1| conserved hypothetical protein [Mobiluncus mulieris 28-1] gi|304648100|gb|EFM45411.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239] gi|307614785|gb|EFN94005.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16] Length = 178 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 78/161 (48%), Gaps = 16/161 (9%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERD--DGNMTLRDCEELS 73 G++ +A ++S ++ P + ++ ++ + KN ++IF++ G + E S Sbjct: 9 GNVDIAAEVSQLLAPTVTQLGLFLEKVCVKGSKNSRQVEIFLDLPAGSGEIGFERLEAAS 68 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 Q IS ++D + +EG Y LEVS+ G + + F+R G + QK +G Sbjct: 69 QEISRLMDSADPVEGKYNLEVSTLGAEHALDNPRLFVRAVGRDAEITVA-----GQKRVG 123 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +I+ ET F E++ + E ISF +L SAR +V Sbjct: 124 RILAAGETDFTWEEDGKQE--------TISFSALQSARTVV 156 >gi|227537267|ref|ZP_03967316.1| protein of hypothetical function DUF150 [Sphingobacterium spiritivorum ATCC 33300] gi|227242871|gb|EEI92886.1| protein of hypothetical function DUF150 [Sphingobacterium spiritivorum ATCC 33300] Length = 156 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 82/159 (51%), Gaps = 7/159 (4%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + + ++ I + +S+ + N +L+I V+ D G + + DC ++S+ + Sbjct: 2 KTKVEQRVEELVLEKIGDRE-DLFIVSIKMQGNGVLEILVDGDSG-IAIDDCVKISRHVG 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 L+ EN+IE YRLEVSSPGID P+V + + G V + + + +K GK++ Sbjct: 60 FHLEEENVIETAYRLEVSSPGIDSPLVLIRQYEKNIGRNVRVK----NHEGEKREGKLLD 115 Query: 138 TSETGFFLEKEKRGEKDMN-ELQIAISFDSLLSARLIVT 175 +E+ +E+ K+ + ++ I F+ + +++++ Sbjct: 116 VTESAITIEESKKEKGKKAVPVESVIPFEQIKETKVLIS 154 >gi|32266338|ref|NP_860370.1| hypothetical protein HH0839 [Helicobacter hepaticus ATCC 51449] gi|34222773|sp|P59821|RIMP_HELHP RecName: Full=Ribosome maturation factor rimP gi|32262388|gb|AAP77436.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 157 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 75/164 (45%), Gaps = 22/164 (13%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFV---------ERDDG-NMTLRDC 69 L+ + I+ + + I +E +L++ + + +G ++L+DC Sbjct: 2 LSQHTQARIEQLAATLGLYIYDIDFFKEDNRPILRVSITRKAPMQKQDCKNGLAVSLQDC 61 Query: 70 EELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ 129 + +S+ ISP+LDVE+ Y LEVSSPG++R + + ++ G V+ +++ DK Sbjct: 62 QNVSELISPLLDVEDENLKDYNLEVSSPGLERVLKKPQHYIYSLGEKVSIKLM----DKS 117 Query: 130 KLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + G + +E D + ++ SF + +++ Sbjct: 118 VIEGILHDVNENV-------SISIDTGKEILSFSFADMKKIKVV 154 >gi|291296310|ref|YP_003507708.1| hypothetical protein Mrub_1931 [Meiothermus ruber DSM 1279] gi|290471269|gb|ADD28688.1| protein of unknown function DUF150 [Meiothermus ruber DSM 1279] Length = 159 Score = 108 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 19/153 (12%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVE-R 59 ME H L + G A S V + V+ + + ++ L KN +L + +E + Sbjct: 1 MEPEHPLQA----------GGAPQWSQVAESVLAPLGYEVLEAGLKSGKNPVLLVRIERK 50 Query: 60 DDGNMTLRDCEELSQAISPILDV-ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVA 118 D+ +++ D E ++A+S LD E ++ Y L+V SPG DRP+ F R+ G + Sbjct: 51 DEVPISIADLERANRALSAHLDTLEALLPARYLLQVESPGADRPLFTARHFERFAG--LK 108 Query: 119 CEIVLSSGDKQKLIGKIMGTSETGF--FLEKEK 149 + G+ G+I LEK++ Sbjct: 109 VRVRSPQGN---FTGRIGAVRGDMVEFLLEKDE 138 >gi|313680245|ref|YP_004057984.1| hypothetical protein Ocepr_1355 [Oceanithermus profundus DSM 14977] gi|313152960|gb|ADR36811.1| protein of unknown function DUF150 [Oceanithermus profundus DSM 14977] Length = 147 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 62/135 (45%), Gaps = 7/135 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVER-DDGNMTLRDCEELSQAISPILD 81 D+ +++ V+ + + +++ L K +L + +ER D+ +T+ D + ++ I LD Sbjct: 2 DLWELVENVVRPLGYEPLEVRLHGAGKTQVLTVRLERLDEAPITVADLQRANRIIGLELD 61 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + I G YRLEV SPG DRP++ + F R+ G V G+++ E Sbjct: 62 RADPIRGSYRLEVESPGPDRPLLTRRHFERFAGLKVKVRTEEGG-----FTGRVVEVGED 116 Query: 142 GFFLEKEKRGEKDMN 156 E + + Sbjct: 117 AVTFELAGGERRTLP 131 >gi|220903348|ref|YP_002478660.1| hypothetical protein Ddes_0062 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|254799886|sp|B8J1Y7|RIMP_DESDA RecName: Full=Ribosome maturation factor rimP gi|219867647|gb|ACL47982.1| protein of unknown function DUF150 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 258 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 36/207 (17%), Positives = 73/207 (35%), Gaps = 52/207 (25%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVE---------RDDGN--- 63 D L I + QPV+ + + ++++FV+ +G+ Sbjct: 1 MTDNALRETIIRLAQPVVHTLGLVIWGVETARAGRTIVRLFVDVPTIPQRPGMPEGSEEP 60 Query: 64 ---------------------------MTLRDCEELSQAISPILDVENIIEGHYRLEVSS 96 T+ CEE+S+ ++ L+VE+ I Y LEVS+ Sbjct: 61 SSAITAPAPAHDPQESSGAEAPAAPTSATIEQCEEISRHLALALEVEDSIADAYVLEVST 120 Query: 97 PGIDRPMVRKSDFLRWNGHVVACEIVLSS---------GDKQKLIGKIMGTSETGFFL-- 145 PG+ R + + G VV + G ++ G ++ + F L Sbjct: 121 PGLSRLFFSLEQMIPYVGDVVEARLHTPVASTDPAAHGGPRRVWRGTLVAVEDDAFVLAP 180 Query: 146 --EKEKRGEKDMNELQIAISFDSLLSA 170 + +D N+ + + ++++ A Sbjct: 181 VTVSPEGEVEDENQPPVRLPWEAVRRA 207 >gi|206895232|ref|YP_002247277.1| protein of unknown function, putative [Coprothermobacter proteolyticus DSM 5265] gi|259585743|sp|B5Y930|RIMP_COPPD RecName: Full=Ribosome maturation factor rimP gi|206737849|gb|ACI16927.1| protein of unknown function, putative [Coprothermobacter proteolyticus DSM 5265] Length = 169 Score = 108 bits (271), Expect = 4e-22, Method: Composition-based stats. Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 9/151 (5%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 D+ I ++ F + + EK + V + ++T+ DCE+L++AI P+L+ Sbjct: 8 ADLEERISKIVVSKGFYFIDLEERMEKGAHIISVVVHGEPSVTIGDCEKLTRAILPLLES 67 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 + LEV+SPG+DR + R+ ++ + G V+ G Q + K++G Sbjct: 68 FPWYGDNDHLEVTSPGLDRVLKREWEYEIFKGRVIDIS-FDRDGKSQTIRAKLVGRENEN 126 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 +E E I FD + A+L+ Sbjct: 127 VVIEYEGN--------YFRIPFDQVRKAKLV 149 >gi|21224052|ref|NP_629831.1| hypothetical protein SCO5703 [Streptomyces coelicolor A3(2)] gi|256784870|ref|ZP_05523301.1| hypothetical protein SlivT_10300 [Streptomyces lividans TK24] gi|289768764|ref|ZP_06528142.1| UPF0090 protein [Streptomyces lividans TK24] gi|34223163|sp|Q9KYR2|RIMP_STRCO RecName: Full=Ribosome maturation factor rimP gi|7801275|emb|CAB91139.1| hypothetical protein SC5H4.27 [Streptomyces coelicolor A3(2)] gi|289698963|gb|EFD66392.1| UPF0090 protein [Streptomyces lividans TK24] Length = 177 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 72/155 (46%), Gaps = 9/155 (5%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + +++P++ +I++ + +L + V+ D G L ++S+A+S L Sbjct: 6 SERLRELLEPLVASQGLDLEEIAVDSVGRRRVLSVVVDSDTGA-DLDRIADVSRALSAKL 64 Query: 81 DVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 D + + EG Y LEV +PG +R + + ++R +V ++ + +L+ +I+ Sbjct: 65 DETDAMGEGEYTLEVGTPGAERSLTQHRHYVRATDRLVRFQLR----EGGELVARILAVD 120 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E G LE G K + F + AR+ V Sbjct: 121 EDGLDLEV--PGVKGRRPTTRRLPFGDIDKARVQV 153 >gi|205373421|ref|ZP_03226225.1| hypothetical protein Bcoam_09030 [Bacillus coahuilensis m4-4] Length = 112 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Query: 51 LLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFL 110 ++L++++++D G + + +C +S+ + +D + I+ +Y LEVSSPG +RP+ ++ DF Sbjct: 1 MVLRVYIDKDAG-VDIEECGIVSERLGEKIDELDPIQHNYFLEVSSPGAERPLKKEKDFE 59 Query: 111 RWNGHVVACEIVLSSGDKQKLI 132 + G V + +++L Sbjct: 60 KAVGKQVYVKTYEPIEGEKELK 81 >gi|303233384|ref|ZP_07320053.1| conserved hypothetical protein [Atopobium vaginae PB189-T1-4] gi|302480513|gb|EFL43604.1| conserved hypothetical protein [Atopobium vaginae PB189-T1-4] Length = 157 Score = 107 bits (269), Expect = 6e-22, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 56/127 (44%), Gaps = 5/127 (3%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDG---NMTLRDCEE 71 L + S ++ V + + ++++ ++ D ++L + + Sbjct: 1 MTPEALRTALLSALEQAAPAHGIDIVDVEIAGSSRAPIIRLRIDNADESLPTISLDEVAQ 60 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 + I+ LD + IEG Y LEVSSPG+ RP+ + DF R+ V + + +++ Sbjct: 61 QHEWINATLDEMDPIEGSYTLEVSSPGLARPLRKHHDFERFAHETVQLQTNNT-EGRKRF 119 Query: 132 IGKIMGT 138 G++ G Sbjct: 120 SGELCGI 126 >gi|315104206|gb|EFT76182.1| conserved hypothetical protein [Propionibacterium acnes HL050PA2] Length = 245 Score = 107 bits (269), Expect = 7e-22, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 74/175 (42%), Gaps = 11/175 (6%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVER--DDG-NMTLRDCEELSQAIS 77 A ++ +++PV+ ++ ++ ++ + L+++ ++ DG +L + E + IS Sbjct: 70 AERLTRLLEPVVSQVGLELDRVDVVPAGRRRLVRVTIDGDGPDGHGPSLDEISEATAEIS 129 Query: 78 PILDVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK--QKLIGK 134 LD + E Y LEVSS G+ P+ + + R GH+V + + G K + G+ Sbjct: 130 HCLDDSGAMGESPYTLEVSSRGVSTPLTQPRHYRRNIGHLVRFTLNPAEGQKSGETFDGR 189 Query: 135 IMGTSETGFFLEKEKRGEKDMNEL--QIAISFDSLLSARLIVTDELLRASLNNYG 187 I E LE E K + + + A +V EL R Sbjct: 190 IAEAGEEVVTLEVEAENSKPHKPVYTTREVQLADVAKA--VVQVELNRRDAQASK 242 >gi|325067075|ref|ZP_08125748.1| ribosome maturation protein RimP [Actinomyces oris K20] Length = 172 Score = 107 bits (269), Expect = 7e-22, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 72/171 (42%), Gaps = 10/171 (5%) Query: 8 HSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGN--M 64 + +PR D LA ++ ++ P++ + + ++++FV+ DG + Sbjct: 5 DQRKDPRQRAD-ALARSLADLLSPIVNDAGLHLESVETTRAGKYSVVRVFVDLLDGPGDL 63 Query: 65 TLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS 124 L ++ AIS LD + ++G Y LEVS+PG +R + F R GH Sbjct: 64 DLDALGPVTAAISQALDEADPVKGQYTLEVSTPGAERELTTLRHFRRAVGHSARVRTADD 123 Query: 125 SGDKQKLIGKIMGTSETGFFLEKEKR-GEKDMNELQIAISFDSLLSARLIV 174 +L G + E + +++ ++ I+ + AR+++ Sbjct: 124 -----ELTGVVTAAEEDDEASDHNGGMVGIEVDGVERRIALGDITEARMVL 169 >gi|269792607|ref|YP_003317511.1| hypothetical protein Taci_0997 [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100242|gb|ACZ19229.1| protein of unknown function DUF150 [Thermanaerovibrio acidaminovorans DSM 6589] Length = 150 Score = 107 bits (269), Expect = 7e-22, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 68/150 (45%), Gaps = 14/150 (9%) Query: 26 SSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 I+ ++E++ + V++ L+ + ++++ ++ D + DCE +S+ + +LD E Sbjct: 10 KDRIRRLVEDLGYICVEVKLVRDLGGQVVRVTIDSPDAPIGHGDCEAVSRKVGELLDGEG 69 Query: 85 --IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 ++G Y LEVSSPG +RP++ DF R+ G + G +K I + G Sbjct: 70 EGFLKGRYYLEVSSPGPNRPLLSLDDFRRFKGSKIRVST----GKGKKRTYFIDDVFDDG 125 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ + L + RL Sbjct: 126 MV-------RLVHEGEELVCPWGDLKNPRL 148 >gi|326333614|ref|ZP_08199852.1| hypothetical protein NBCG_05048 [Nocardioidaceae bacterium Broad-1] gi|325948595|gb|EGD40697.1| hypothetical protein NBCG_05048 [Nocardioidaceae bacterium Broad-1] Length = 166 Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 69/159 (43%), Gaps = 11/159 (6%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQA 75 +A I + ++ + + + K +L+I V++ DG +T + E ++ Sbjct: 11 RKDAIASAIDKALADPLQALGLDIEAVEITPAGKRRILRIAVDK-DGGITHEEVTEATRE 69 Query: 76 ISPILDVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 ++ +LD +++ E Y LEV+SPG+DRP+ + R G +V D G+ Sbjct: 70 VNRVLDESDVMGEQPYTLEVTSPGVDRPLTLPRHWRRNKGRLVKVTAT----DGSTFTGR 125 Query: 135 IMGTSETGFFLEKEKRGEK----DMNELQIAISFDSLLS 169 + + E LE + + D+ + + I F + Sbjct: 126 VKESDEDRVSLEVSGKRREVAYADVKKALVQIEFKRIDE 164 >gi|227486446|ref|ZP_03916762.1| protein of hypothetical function DUF150 [Anaerococcus lactolyticus ATCC 51172] gi|227235627|gb|EEI85642.1| protein of hypothetical function DUF150 [Anaerococcus lactolyticus ATCC 51172] Length = 147 Score = 107 bits (268), Expect = 8e-22, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 70/152 (46%), Gaps = 11/152 (7%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 M L + + ++ IE + + V + + K L ++ ++DG +T+ DCE +S + Sbjct: 1 MDLIEKLKNALESDIENLGYDLVDLEFIGGKDGNRLIFYIYKEDG-ITIDDCERVSGFLD 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD ++I+ Y LEVSS + RP+ D LR ++ ++ + ++ K+ Sbjct: 60 EKLDELDLIKSSYYLEVSSQDLSRPLKTDKDLLRNKDELLKIKLK----NGDLILAKMKD 115 Query: 138 TSETGFFLEKEKRG-----EKDMNELQIAISF 164 + KE + D+ E++I I F Sbjct: 116 IKDESIVFAKEDGKDIEINKSDIKEIKIEIVF 147 >gi|312892422|ref|ZP_07751917.1| protein of unknown function DUF150 [Mucilaginibacter paludis DSM 18603] gi|311295206|gb|EFQ72380.1| protein of unknown function DUF150 [Mucilaginibacter paludis DSM 18603] Length = 161 Score = 107 bits (268), Expect = 9e-22, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 77/166 (46%), Gaps = 16/166 (9%) Query: 19 MGLAGDISSVIQPVIEEM-SFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M + ++ +++ I + V + +L + L I V+ D G + + DC +S+ + Sbjct: 1 MNIEKRVALLVEEKIADRPELFLVDVKMLPNRK--LIILVDGDAG-IGIADCAAISRFVG 57 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 L+ +N+IE Y LEVSSPGID P+ + + G ++ ++ D Q GK++ Sbjct: 58 FKLEEDNVIEEAYNLEVSSPGIDSPLTLIRQYTKNIGRDLSVKMT----DGQLREGKLLS 113 Query: 138 TSETGFFLEKE--------KRGEKDMNELQIAISFDSLLSARLIVT 175 +E ++++ K ++ I + A+++++ Sbjct: 114 LAEDAIVIDEKIKAVRKAPGEKGKKAEVVESTIPLTEIAEAKVLIS 159 >gi|313676537|ref|YP_004054533.1| hypothetical protein Ftrac_2447 [Marivirga tractuosa DSM 4126] gi|312943235|gb|ADR22425.1| protein of unknown function DUF150 [Marivirga tractuosa DSM 4126] Length = 157 Score = 107 bits (268), Expect = 9e-22, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 82/158 (51%), Gaps = 7/158 (4%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 GL I + + +I E + V I + L + + ++ D+G +++ C +S+ ++ Sbjct: 3 GLDEKIKAYLGEIITEPQYFIVDIVISGNDKLKIVVLLDGDEG-VSIDYCASVSRQLAHR 61 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 ++ + ++E Y LEVSSPG+D P+ +L+ G V + D + + G+++ Sbjct: 62 MEEDEVLEKAYVLEVSSPGLDHPLTNLRQYLKNIGRKVKVDTT----DGKAIRGELLEAK 117 Query: 140 ETGFFLEK--EKRGEKDMNELQIAISFDSLLSARLIVT 175 E + + +++G+K + + +SF+++ +++V+ Sbjct: 118 EDFILVNQEIKEKGKKKIKLEETKVSFENIDKTKVLVS 155 >gi|291298940|ref|YP_003510218.1| hypothetical protein Snas_1418 [Stackebrandtia nassauensis DSM 44728] gi|290568160|gb|ADD41125.1| protein of unknown function DUF150 [Stackebrandtia nassauensis DSM 44728] Length = 162 Score = 107 bits (268), Expect = 9e-22, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 67/153 (43%), Gaps = 16/153 (10%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLL-QIFVERDDGNMTLRDCEELSQAISPILD 81 I +V++PV+ E + ++ + + L ++ V+RD G + L +S+ +S LD Sbjct: 7 KRILAVLEPVLAEAGYDLEELKVSQAGRRTLVRVLVDRDAG-VDLDAIASVSRVLSKALD 65 Query: 82 VENIIEG-----HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 +G Y LEVSSPG+DRP+ + R G +V+ + + + +I Sbjct: 66 KSEADDGPFATNSYTLEVSSPGVDRPLTLPRHWRRNVGRLVSVRLSDA-----TVTARIH 120 Query: 137 GTSETGFFLEKEKRGEK----DMNELQIAISFD 165 + LE + D+ ++ + F Sbjct: 121 AADDENVELELSDGTRRVAYGDLGPGRVQLEFS 153 >gi|309804436|ref|ZP_07698504.1| conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] gi|308166249|gb|EFO68464.1| conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] Length = 115 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 53/102 (51%), Gaps = 3/102 (2%) Query: 31 PVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVE--NIIE 87 P++ V I ++E N L+I+V+R+ + + + LS+++S LD+ + + Sbjct: 1 PLVHARGDELVDIEYVKENNQNYLRIYVDREPNGIDIDEIATLSESVSEQLDLINPDPLP 60 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ 129 Y LE+SSPG++RP+ ++D+ + V + ++ Sbjct: 61 DPYILELSSPGVERPIKTEADWCKAKNDYVHVGLYKKLMGRK 102 >gi|117928725|ref|YP_873276.1| hypothetical protein Acel_1518 [Acidothermus cellulolyticus 11B] gi|259585656|sp|A0LV30|RIMP_ACIC1 RecName: Full=Ribosome maturation factor rimP gi|117649188|gb|ABK53290.1| protein of unknown function DUF150 [Acidothermus cellulolyticus 11B] Length = 170 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 17/154 (11%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPIL 80 A ++ ++ PV+ ++LL+ + L+I V++ DG + L + SQAIS L Sbjct: 7 AQRLAELLAPVVAGQGLDLEGVTLLDHRTSAHLRIVVDK-DGGVQLDEIAAASQAISHFL 65 Query: 81 D---VENII--EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 D + I Y LEVSSPGIDRP+V + R G +V ++ ++ ++ Sbjct: 66 DNDAEADAIIGPRSYTLEVSSPGIDRPLVEPRHWRRAIGRLVRVQLPDLGP----VVARV 121 Query: 136 MGTSETGFFL------EKEKRGEKDMNELQIAIS 163 + L + + E +AI+ Sbjct: 122 QDVTGDQVRLGIEWQYTDDGACVRQYEERTVAIA 155 >gi|29829096|ref|NP_823730.1| hypothetical protein SAV_2554 [Streptomyces avermitilis MA-4680] gi|34223104|sp|Q82K50|RIMP_STRAW RecName: Full=Ribosome maturation factor rimP gi|29606202|dbj|BAC70265.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 169 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 72/155 (46%), Gaps = 9/155 (5%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + +++P++ I + + +L++ V+ D+G L ++S+A+S L Sbjct: 6 SERLRELLEPLVGSQGLDLEGIEVESVGRKRVLRVVVDSDEGA-DLDAIADVSRALSAKL 64 Query: 81 DVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 D + + EG Y LEV +PG +R + ++R +V ++ +L+ +I+ Sbjct: 65 DETDAMGEGEYTLEVGTPGAERALTEHRHYVRAVDRLVRFQLTEGD----ELVARILTVD 120 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + G LE G K ++F+ + AR+ V Sbjct: 121 DAGLDLEV--PGVKGRKATTRRLAFEDIAKARVQV 153 >gi|254458920|ref|ZP_05072343.1| conserved hypothetical protein [Campylobacterales bacterium GD 1] gi|207084191|gb|EDZ61480.1| conserved hypothetical protein [Campylobacterales bacterium GD 1] Length = 149 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 42/160 (26%), Positives = 72/160 (45%), Gaps = 23/160 (14%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLL-QI------FVERDDGNMTLRDCEE 71 M L DI+S+++ V +++ E + + +I V+ ++L C Sbjct: 1 MSLESDINSLVKSV----DLELYDATVVSENDETIYRISVISKEIVDGKRSGISLDACVN 56 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 L+ ISP+LDV + G YRLEV SPGI+R + FL G ++ + +K+K Sbjct: 57 LTHLISPLLDVTPPVSGDYRLEVGSPGIERKLSSLKHFLLSIGENISLLLT----NKEKY 112 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 GK++ ++ FL + I F +L A+ Sbjct: 113 KGKLVKVKDSKIFLNVGDEK--------VEIDFYEILKAK 144 >gi|212704655|ref|ZP_03312783.1| hypothetical protein DESPIG_02718 [Desulfovibrio piger ATCC 29098] gi|212671889|gb|EEB32372.1| hypothetical protein DESPIG_02718 [Desulfovibrio piger ATCC 29098] Length = 244 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 27/193 (13%), Positives = 68/193 (35%), Gaps = 38/193 (19%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD--------------- 60 + L ++ + P+++ + + + +++FV+ Sbjct: 1 MSENSLKETVTRLATPLVQAQGLEIWGVEIAQAGRTTVRVFVDLPLEVKQAQAALSADSD 60 Query: 61 -------------DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKS 107 + ++ CEE+S+ + L+VE++IE Y LEVS+PG R Sbjct: 61 PADNLEDSADIMAARSASIDQCEEISRQLGLALEVEDLIEQAYVLEVSTPGFSRLFFSLD 120 Query: 108 DFLRWNGHVVACEIVLSSGD------KQKLIGKIMGTSETGFFL----EKEKRGEKDMNE 157 + G +V +V + ++ G + +++ + + Sbjct: 121 QMRSYVGDMVELRMVSAYAPENAPAARRAWRGVLREVTDSAVRVAPASVSAEGDICPEAM 180 Query: 158 LQIAISFDSLLSA 170 ++ + +D + A Sbjct: 181 DEVLVPWDMVRRA 193 >gi|302554521|ref|ZP_07306863.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM 40736] gi|302472139|gb|EFL35232.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM 40736] Length = 169 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 75/155 (48%), Gaps = 9/155 (5%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + +++P++ +I++ + +L++ V+ D G L ++S+A+S L Sbjct: 6 SERLRELLEPLVNSQGLDLDEIAVDSVGRKRVLRVVVDSDTGA-DLDRIADVSRALSAKL 64 Query: 81 DVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 D + + EG Y LEV +PG +RP+ ++R +V ++ +L+ +I+ Sbjct: 65 DETDAMGEGEYTLEVGTPGAERPLTEHRHYVRATDRLVKFQLAEGD----ELVARILKVD 120 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + G + E G K I+FD ++ AR+ V Sbjct: 121 DEGV--DAEVPGVKGRKATARRIAFDDIVRARVQV 153 >gi|87125355|ref|ZP_01081201.1| hypothetical protein RS9917_08055 [Synechococcus sp. RS9917] gi|86167124|gb|EAQ68385.1| hypothetical protein RS9917_08055 [Synechococcus sp. RS9917] Length = 155 Score = 105 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 64/146 (43%), Gaps = 2/146 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGN-MTLRDCEELSQAISP 78 L D+++V + F + ++ + + LQI + R +G+ ++L DC LS + Sbjct: 5 LLPDLTAVAASTAQAHGFELADVQVMTHLQPMTLQIQIRRSNGDDVSLDDCARLSAPMGD 64 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +D + Y LE+SSPGI + DF + + + G +Q+ G ++ Sbjct: 65 AIDNAALPIEAYVLEISSPGIGDQLQTDRDFRTFRSYPIEVIYRDDEGGEQRQQGSLLER 124 Query: 139 SETGFFLEKEKRGEKDMNELQIAISF 164 ++ L R ++ + IA+ Sbjct: 125 TDEHIHLNVRGRIKRISRQAVIAVQL 150 >gi|78776877|ref|YP_393192.1| hypothetical protein Suden_0678 [Sulfurimonas denitrificans DSM 1251] gi|91208367|sp|Q30SS4|RIMP_SULDN RecName: Full=Ribosome maturation factor rimP gi|78497417|gb|ABB43957.1| Protein of unknown function DUF150 [Sulfurimonas denitrificans DSM 1251] Length = 149 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 73/154 (47%), Gaps = 19/154 (12%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFV------ERDDGNMTLRDCEELSQAIS 77 + I+ ++ + +IS+ + + + ++ V + ++L +C LS+ IS Sbjct: 3 LEKDIESFVKSLDLELYEISVARDGDDSIYRVNVLSTQIEDGKKKGVSLDECVHLSRLIS 62 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 P+LDV + G YRLEV +PGI+R + F+ G VA + K+KL G ++ Sbjct: 63 PLLDVTPPMSGEYRLEVGTPGIERKVSTLKQFVLSIGERVALTLKS----KEKLKGLLLR 118 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 E+ +L D++ ++ + F + A+ Sbjct: 119 VEESNIYL--------DVDAEEVCVEFAQISKAK 144 >gi|184201253|ref|YP_001855460.1| hypothetical protein KRH_16070 [Kocuria rhizophila DC2201] gi|259585800|sp|B2GKR8|RIMP_KOCRD RecName: Full=Ribosome maturation factor rimP gi|183581483|dbj|BAG29954.1| hypothetical protein [Kocuria rhizophila DC2201] Length = 163 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 69/156 (44%), Gaps = 11/156 (7%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGN--MTLRDCEELSQAISPI 79 I + ++PV+ + L + LQ+ V+ DG + L ++Q IS Sbjct: 7 APIRATVEPVVAAAGLHLEECELKGQGATRTLQVLVDLPDGTEALGLDRVAAVAQEISDA 66 Query: 80 LDVENIIEGH-YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LD ++ + G Y LEVSSPG R + + R GH+V + + ++ +++ Sbjct: 67 LDRDDPVPGPPYELEVSSPGATRTLETPRHWRRTVGHLVRIRTL----EGERYTARLLEA 122 Query: 139 SETGFFLEKEKRGEKDMNELQI---AISFDSLLSAR 171 E +++ + +K M + + + S+ +AR Sbjct: 123 HEDHAVVQRSHQPKKGMPVKLLDPERVDYASIRTAR 158 >gi|256832249|ref|YP_003160976.1| hypothetical protein Jden_1017 [Jonesia denitrificans DSM 20603] gi|256685780|gb|ACV08673.1| protein of unknown function DUF150 [Jonesia denitrificans DSM 20603] Length = 177 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 65/159 (40%), Gaps = 19/159 (11%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDD---GNMTLRDCEELSQA 75 + + + P++ + + L +++ V+ + G + L +S+ Sbjct: 5 DVPTQVHDAVAPIVHDAGLFLEDLEYLGSGPTTTIRVTVDLPEDVSGPVGLETISSVSRD 64 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LD +++ Y LEVSSPG RP+ + F R G +++ + V + ++ ++ Sbjct: 65 LSTALDSVSVLHSQYTLEVSSPGTSRPLTQPRHFRRNVGRLISVKTV----NGERFTERL 120 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + ++ + + ++ + A++ V Sbjct: 121 VEVTDDAVLFDTRRH-----------VALADIRRAKVEV 148 >gi|259016313|sp|Q7U8L5|RIMP_SYNPX RecName: Full=Ribosome maturation factor rimP Length = 155 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 64/154 (41%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDG-NMTLRDCEELSQAISP 78 L ++ ++ V + F I LL + L++ + R +G ++ + DC S + Sbjct: 5 LLPELETLATSVAADQGFELCGIQLLTHLAPMTLEVHIRRSNGVDVNMDDCAGFSGTLGE 64 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 L+ ++ Y LE+SSPGI + DF + G V +Q+L G ++ Sbjct: 65 ALESAQLLTEAYVLEISSPGIGETLSSDRDFQTFRGFPVEVVHRDRDDTEQRLEGLLLER 124 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 E + R ++ + D +LS RL Sbjct: 125 DEDTLQINIRGRIKR--------LPRDHVLSVRL 150 >gi|255033850|ref|YP_003084471.1| hypothetical protein Dfer_0034 [Dyadobacter fermentans DSM 18053] gi|254946606|gb|ACT91306.1| protein of unknown function DUF150 [Dyadobacter fermentans DSM 18053] Length = 160 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 72/158 (45%), Gaps = 11/158 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 M + + ++ P++E+ V I++ K + + I V+ D+G +T++ C +S+ ++ Sbjct: 1 MTVKEHLEVLLAPLLEDGDCFLVDIAIKPSKLSQKVTILVDSDEG-ITIQQCTSISRRLA 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 L+ + Y LEVSSPG+D+P++ + + G + + + L G + Sbjct: 60 KQLEELEVFTQAYTLEVSSPGLDQPLLLPRQYKKNVGRNLKITLKS----GEILQGTLTD 115 Query: 138 TSETGFFLEK-----EKRGEKDMNELQIAISFDSLLSA 170 ++ ++ + + D L I+ D + A Sbjct: 116 AGDSDITIQLPAPKKKPKTPVDEASLVRTIALDDISKA 153 >gi|282854641|ref|ZP_06263976.1| conserved hypothetical protein [Propionibacterium acnes J139] gi|282582223|gb|EFB87605.1| conserved hypothetical protein [Propionibacterium acnes J139] Length = 199 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 74/175 (42%), Gaps = 11/175 (6%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVER--DDG-NMTLRDCEELSQAIS 77 A ++ +++PV+ ++ ++ ++ + L+++ ++ DG +L + E + IS Sbjct: 24 AERLTRLLEPVVSQVGLELDRVDVVPAGRRRLVRVTIDGDGPDGHGPSLDEISEATAEIS 83 Query: 78 PILDVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK--QKLIGK 134 LD + E Y LEVSS G+ P+ + + R GH+V + + G K + G+ Sbjct: 84 HCLDDSGAMGESPYTLEVSSRGVSTPLTQPRHYRRNIGHLVRFTLNPAEGQKSGETFDGR 143 Query: 135 IMGTSETGFFLEKEKRGEKDMNEL--QIAISFDSLLSARLIVTDELLRASLNNYG 187 I E LE E K + + + A +V EL R Sbjct: 144 IAEAGEEVVTLEVEAENSKPHKPVYTTREVQLADVAKA--VVQVELNRRDAQASK 196 >gi|94985334|ref|YP_604698.1| hypothetical protein Dgeo_1233 [Deinococcus geothermalis DSM 11300] gi|259585747|sp|Q1IZ05|RIMP_DEIGD RecName: Full=Ribosome maturation factor rimP gi|94555615|gb|ABF45529.1| protein of unknown function DUF150 [Deinococcus geothermalis DSM 11300] Length = 155 Score = 104 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 55/131 (41%), Gaps = 7/131 (5%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVER-DDGNMTLRDCEELSQAISPI 79 A ++ ++ + V++ + + + + + + ++ I ++R D+ +T+ D E S+A+ Sbjct: 9 APNLRTLAEGVLQPLGYEVLDVQVQNPGRRPIVVIRMDRLDEQPVTVEDLETASRAVGAE 68 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 D + I G YRLE+ SPG RP+ R + R G GD I Sbjct: 69 FDRVDPIAGEYRLELESPGAKRPLTRARHYERMLGLKARVR-----GDGHSFTAPIKAVD 123 Query: 140 ETGFFLEKEKR 150 + Sbjct: 124 GEQVTFDVGGE 134 >gi|308176798|ref|YP_003916204.1| hypothetical protein AARI_10150 [Arthrobacter arilaitensis Re117] gi|307744261|emb|CBT75233.1| conserved hypothetical protein [Arthrobacter arilaitensis Re117] Length = 188 Score = 104 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 78/158 (49%), Gaps = 13/158 (8%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDG--NMTLRDCEELSQAISP 78 A +++++ +E ++SL K +++QI V++ DG ++ L + E++ IS Sbjct: 12 AQRLTALLSKEVESHGLLLEEVSLRPSGKQMIVQIIVDKADGHESLNLDELGEVTTTISN 71 Query: 79 ILDVENIIEGH--YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 LD + + Y LEVSSPG+ RP+ + ++R +V + D KL G+++ Sbjct: 72 ALDKDAVYASAAPYELEVSSPGLSRPLTAQRHWIRAINRMVKISL----ADGTKLRGRLL 127 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAIS----FDSLLSA 170 +++ + + + K ++++ F+++ A Sbjct: 128 EVNDSDVLVAEHREPAKKGMKVKVLDPATHAFENIRKA 165 >gi|297202731|ref|ZP_06920128.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083] gi|297148178|gb|EFH28865.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083] Length = 165 Score = 104 bits (261), Expect = 6e-21, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 73/155 (47%), Gaps = 9/155 (5%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + +++P++ +I++ + +L++ V+ D G L ++S+A+S L Sbjct: 6 SERLRELLEPLVTSQGLDLEEIAVDSVGRKRVLRVVVDSDTGA-DLDQIADVSRALSAKL 64 Query: 81 DVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 D + + G Y LEV +PG +R + ++R +V ++ + +L+ +I+ Sbjct: 65 DESDAMGAGEYTLEVGTPGAERLLKEHRHYVRAVSRLVKFQLT----EGGELVARILKVD 120 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + G L+ E G K ++F + AR+ V Sbjct: 121 DDG--LDVEVPGVKGRKATARRLAFSEVDKARVQV 153 >gi|314923906|gb|EFS87737.1| conserved hypothetical protein [Propionibacterium acnes HL001PA1] gi|314966034|gb|EFT10133.1| conserved hypothetical protein [Propionibacterium acnes HL082PA2] gi|314981919|gb|EFT26012.1| conserved hypothetical protein [Propionibacterium acnes HL110PA3] gi|315090734|gb|EFT62710.1| conserved hypothetical protein [Propionibacterium acnes HL110PA4] gi|315094982|gb|EFT66958.1| conserved hypothetical protein [Propionibacterium acnes HL060PA1] gi|327328083|gb|EGE69852.1| hypothetical protein HMPREF9341_01135 [Propionibacterium acnes HL103PA1] Length = 178 Score = 103 bits (259), Expect = 8e-21, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 74/175 (42%), Gaps = 11/175 (6%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVER--DDG-NMTLRDCEELSQAIS 77 A ++ +++PV+ ++ ++ ++ + L+++ ++ DG +L + E + IS Sbjct: 3 AERLTRLLEPVVSQVGLELDRVDVVPAGRRRLVRVTIDGDGPDGHGPSLDEISEATAEIS 62 Query: 78 PILDVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK--QKLIGK 134 LD + E Y LEVSS G+ P+ + + R GH+V + + G K + G+ Sbjct: 63 HCLDDSGAMGESPYTLEVSSRGVSTPLTQPRHYRRNIGHLVRFTLNPAEGQKSGETFDGR 122 Query: 135 IMGTSETGFFLEKEKRGEKDMNEL--QIAISFDSLLSARLIVTDELLRASLNNYG 187 I E LE E K + + + A +V EL R Sbjct: 123 IAEAGEEVVTLEVEAENSKPHKPVYTTREVQLADVAKA--VVQVELNRRDAQASK 175 >gi|289426404|ref|ZP_06428147.1| conserved hypothetical protein [Propionibacterium acnes SK187] gi|289153132|gb|EFD01850.1| conserved hypothetical protein [Propionibacterium acnes SK187] Length = 197 Score = 103 bits (259), Expect = 9e-21, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 73/175 (41%), Gaps = 11/175 (6%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVER--DDG-NMTLRDCEELSQAIS 77 A ++ +++PV+ ++ ++ ++ + L+++ ++ DG +L + E + IS Sbjct: 22 AERLTRLLEPVVSQVGLELDRVDVVPAGRRRLVRVTIDGDGPDGHGPSLDEISEATAEIS 81 Query: 78 PILDVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK--QKLIGK 134 LD + E Y LEVSS G+ P+ + + R GH+V + + K + G+ Sbjct: 82 HCLDDSGAMGESPYTLEVSSRGVSTPLTQPRHYRRNIGHLVRFTLNPAEEQKSGETFDGR 141 Query: 135 IMGTSETGFFLEKEKRGEKDMNEL--QIAISFDSLLSARLIVTDELLRASLNNYG 187 I E LE E K + + + A +V EL R Sbjct: 142 IAEAGEEVVTLEVEAENSKPHKPVYTTREVQLADVAKA--VVQVELNRRDAQASK 194 >gi|226226959|ref|YP_002761065.1| hypothetical protein GAU_1553 [Gemmatimonas aurantiaca T-27] gi|259585777|sp|C1A8N5|RIMP_GEMAT RecName: Full=Ribosome maturation factor rimP gi|226090150|dbj|BAH38595.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 155 Score = 103 bits (259), Expect = 9e-21, Method: Composition-based stats. Identities = 38/151 (25%), Positives = 73/151 (48%), Gaps = 7/151 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVER-DDGNMTLRDCEELSQAISPILDV 82 I ++ + + F V++ + +L+I ++R D+ +T+ DC +S+A+ L+ Sbjct: 5 IEPIVTQELAGLGFDLVELRRGGSRARPVLEIRIDRRDEEKVTIDDCARVSRALEARLEA 64 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 ++ Y LEVSSPG DRP+ +D+ R+ G L +G KQ++ I+ + G Sbjct: 65 AALVGEQYVLEVSSPGADRPLRHAADWRRFVGRRATVTSGLLAGGKQEVE--IVAVTGEG 122 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 E +D ++++ + ARL Sbjct: 123 ---GAEVALVRDPKGREVSVPLREVSQARLA 150 >gi|294631731|ref|ZP_06710291.1| conserved hypothetical protein [Streptomyces sp. e14] gi|292835064|gb|EFF93413.1| conserved hypothetical protein [Streptomyces sp. e14] Length = 169 Score = 103 bits (259), Expect = 9e-21, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 73/155 (47%), Gaps = 9/155 (5%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + +++P++ +I++ + +L++ V+ D G L ++S+A+S L Sbjct: 6 SERLRELLEPLVASQGLDLEEIAVDSVGRKRVLRVVVDSDTGA-DLDQIADVSRALSAKL 64 Query: 81 DVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 D + + EG Y LEV +PG +R + ++R G + ++ + +L+ +I+ Sbjct: 65 DESDAMGEGEYTLEVGTPGAERLLTEHRHYVRATGRLAKFQL----AEGGELVARILRVD 120 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + G LE + ++A ++ AR+ V Sbjct: 121 DEGLDLEVPGVKGRKATTRRVAFP--DVVRARVQV 153 >gi|46198658|ref|YP_004325.1| putative cytoplasmic protein [Thermus thermophilus HB27] gi|55980671|ref|YP_143968.1| hypothetical protein TTHA0702 [Thermus thermophilus HB8] gi|51316688|sp|Q72KG3|RIMP_THET2 RecName: Full=Ribosome maturation factor rimP gi|62299029|sp|Q56425|RIMP_THET8 RecName: Full=Ribosome maturation factor rimP gi|46196281|gb|AAS80698.1| hypothetical cytosolic protein [Thermus thermophilus HB27] gi|55772084|dbj|BAD70525.1| conserved hypothetical protein [Thermus thermophilus HB8] Length = 157 Score = 103 bits (259), Expect = 9e-21, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 56/137 (40%), Gaps = 8/137 (5%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAI 76 G + D+ +++ + + +++ + LL +D+ +T+ D EE S+ I Sbjct: 11 GGGEVTVDLWQLVEEAVSPLGLDVLEVHF--ARGELLVRLERKDERPITVADLEEASRHI 68 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 LD E+ I G YRL V SPG RP+ + F R+ G + + G+I+ Sbjct: 69 EAALDREDPIPGSYRLLVESPGPKRPLFTRRHFERFQG------LKAKVPGPEGFTGRIL 122 Query: 137 GTSETGFFLEKEKRGEK 153 + + Sbjct: 123 RVEGEEVVFQVGDEERR 139 >gi|327403852|ref|YP_004344690.1| Ribosome maturation factor rimP [Fluviicola taffensis DSM 16823] gi|327319360|gb|AEA43852.1| Ribosome maturation factor rimP [Fluviicola taffensis DSM 16823] Length = 158 Score = 103 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 81/159 (50%), Gaps = 13/159 (8%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 + + + I+E R + L ++++ +++ +GN+++ DC +S+ I LD Sbjct: 5 QTVKELAEERIKERDERLFIVELTISSTNVIRLELDKTEGNVSIEDCMSVSRNIEHNLDR 64 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ + L VSS G+D+P+ + +++ G + ++ K+K+ G ++ ETG Sbjct: 65 ED---ADFELSVSSAGLDKPLRVHAQYVKNIGRGLDVKLKS----KEKVTGTLISVDETG 117 Query: 143 FFLE------KEKRGEKDMNELQIAISFDSLLSARLIVT 175 L+ E + +K++ ++ I+F + A+++++ Sbjct: 118 VVLQHEEKQAIEGKKKKELVVIENKIAFSDINEAKIVIS 156 >gi|256379833|ref|YP_003103493.1| hypothetical protein Amir_5837 [Actinosynnema mirum DSM 43827] gi|255924136|gb|ACU39647.1| protein of unknown function DUF150 [Actinosynnema mirum DSM 43827] Length = 174 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 74/153 (48%), Gaps = 13/153 (8%) Query: 21 LAGDISSVIQPVIEEMSF--RSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 LA ++ V++ +E + + + + + L+++ V+ D+G + L + + S+A+S Sbjct: 9 LAAQLTPVVREAVEAIGYDLELLDV-NQAGRRRLVKVVVDGDEG-IGLDEVAQASRAVSA 66 Query: 79 ILDV-ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD E++I G Y LEV+SPG DRP+ R +LR +V + ++ + G++ Sbjct: 67 ALDANEHLIAGPYTLEVTSPGADRPLTRPRHWLRARLRLVKVK----QPEQVEWFGRVGD 122 Query: 138 TSETGFFLEKEKRGEK----DMNELQIAISFDS 166 +TG L + + + + + F Sbjct: 123 CDDTGVVLLVKGELRRVEYSAIERAVVEVEFKQ 155 >gi|332670043|ref|YP_004453051.1| hypothetical protein Celf_1529 [Cellulomonas fimi ATCC 484] gi|332339081|gb|AEE45664.1| protein of unknown function DUF150 [Cellulomonas fimi ATCC 484] Length = 193 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 71/166 (42%), Gaps = 17/166 (10%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFV----ERDDGNMTLRDCEELSQAIS 77 A + V++P + E+ + + + V E D+G + L E+++A+S Sbjct: 7 AQRVRQVVEPAVAEVGLLLEDVEVTRAGAHSVVRVVVDVPEDDEGELDLDRVAEVTRAVS 66 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD ++++ G Y LEVSSPG+ RP+ ++ F R G V+ +V D + G++ Sbjct: 67 DALDAQDVVAGEYTLEVSSPGVSRPLTQRRHFARAVGRSVSVRLV----DGGSVSGRLTA 122 Query: 138 TSETGFFLEKEK---------RGEKDMNELQIAISFDSLLSARLIV 174 + +G + N + I + AR+ V Sbjct: 123 VERGAQDADDAVVVVPVTPGLKGRRPKNGAPVRILLADVRDARVEV 168 >gi|114777566|ref|ZP_01452547.1| hypothetical protein SPV1_07661 [Mariprofundus ferrooxydans PV-1] gi|114552037|gb|EAU54554.1| hypothetical protein SPV1_07661 [Mariprofundus ferrooxydans PV-1] Length = 158 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 78/153 (50%), Gaps = 8/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I S+++P+++E+ ++ISL N LL++ V++ G + E +S+ ++ Sbjct: 1 MESKIESLLRPIVDELGVEIIKISLGGGGHNPLLKVVVDKA-GGVDSGMLERISRGLALQ 59 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG-T 138 LDVE++I+ +RLEV++PG+D P+ +DF R+ G + D G+ +G Sbjct: 60 LDVEDLIKSAFRLEVTTPGLDWPLTTNADFERYRGEWLKV----MFADGSSQEGRNLGPV 115 Query: 139 SETGFFLEKEKRGEKDMNELQIAI-SFDSLLSA 170 S+ F L E E I + + ++ A Sbjct: 116 SDHAFMLLVEGSKRVKDQEQVIEMADVNKVVRA 148 >gi|291519297|emb|CBK74518.1| Uncharacterized protein conserved in bacteria [Butyrivibrio fibrisolvens 16/4] Length = 100 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 54/101 (53%), Gaps = 14/101 (13%) Query: 8 HSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTL 66 H+ YE R +I P+++E+ F + ++E + L+ +++++ G +T+ Sbjct: 4 HTDYEKRT----------EELITPILDELGFELYDVEYVKEGADYYLRAYIDKE-GGITI 52 Query: 67 RDCEELSQAISPILDVENII--EGHYRLEVSSPGIDRPMVR 105 DC ++S ++ +LD E I + Y EVSSPG+ R + + Sbjct: 53 DDCVDVSHRMNELLDAEPQIGGDEGYIFEVSSPGLGRILKK 93 >gi|119632744|gb|ABL84379.1| unknown [Streptococcus suis] Length = 99 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 6/101 (5%) Query: 76 ISPILDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 ISPILD + Y LEV+SPG++RP+ + G + ++ + + G Sbjct: 1 ISPILDTIKPDPFPDQYMLEVTSPGLERPLKTADAVEKAVGKYIHVKLYQAIDKIKVFEG 60 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ T +E + K ++ I + ++ ARL V Sbjct: 61 TLLSFDGTDLIMEYMDKTRKK----EVTIPYQTVAKARLAV 97 >gi|50842973|ref|YP_056200.1| hypothetical protein PPA1495 [Propionibacterium acnes KPA171202] gi|289428787|ref|ZP_06430470.1| conserved hypothetical protein [Propionibacterium acnes J165] gi|295131044|ref|YP_003581707.1| hypothetical protein HMPREF0675_4562 [Propionibacterium acnes SK137] gi|81611447|sp|Q6A7M3|RIMP_PROAC RecName: Full=Ribosome maturation factor rimP gi|50840575|gb|AAT83242.1| conserved protein [Propionibacterium acnes KPA171202] gi|289158185|gb|EFD06405.1| conserved hypothetical protein [Propionibacterium acnes J165] gi|291375538|gb|ADD99392.1| conserved hypothetical protein [Propionibacterium acnes SK137] gi|313763590|gb|EFS34954.1| conserved hypothetical protein [Propionibacterium acnes HL013PA1] gi|313773528|gb|EFS39494.1| conserved hypothetical protein [Propionibacterium acnes HL074PA1] gi|313793984|gb|EFS42008.1| conserved hypothetical protein [Propionibacterium acnes HL110PA1] gi|313801371|gb|EFS42622.1| conserved hypothetical protein [Propionibacterium acnes HL110PA2] gi|313807950|gb|EFS46431.1| conserved hypothetical protein [Propionibacterium acnes HL087PA2] gi|313811581|gb|EFS49295.1| conserved hypothetical protein [Propionibacterium acnes HL083PA1] gi|313813359|gb|EFS51073.1| conserved hypothetical protein [Propionibacterium acnes HL025PA1] gi|313816770|gb|EFS54484.1| conserved hypothetical protein [Propionibacterium acnes HL059PA1] gi|313819519|gb|EFS57233.1| conserved hypothetical protein [Propionibacterium acnes HL046PA2] gi|313822157|gb|EFS59871.1| conserved hypothetical protein [Propionibacterium acnes HL036PA1] gi|313823609|gb|EFS61323.1| conserved hypothetical protein [Propionibacterium acnes HL036PA2] gi|313825932|gb|EFS63646.1| conserved hypothetical protein [Propionibacterium acnes HL063PA1] gi|313831321|gb|EFS69035.1| conserved hypothetical protein [Propionibacterium acnes HL007PA1] gi|313834931|gb|EFS72645.1| conserved hypothetical protein [Propionibacterium acnes HL056PA1] gi|313839908|gb|EFS77622.1| conserved hypothetical protein [Propionibacterium acnes HL086PA1] gi|314914744|gb|EFS78575.1| conserved hypothetical protein [Propionibacterium acnes HL005PA4] gi|314919294|gb|EFS83125.1| conserved hypothetical protein [Propionibacterium acnes HL050PA1] gi|314920796|gb|EFS84627.1| conserved hypothetical protein [Propionibacterium acnes HL050PA3] gi|314924648|gb|EFS88479.1| conserved hypothetical protein [Propionibacterium acnes HL036PA3] gi|314930475|gb|EFS94306.1| conserved hypothetical protein [Propionibacterium acnes HL067PA1] gi|314954367|gb|EFS98773.1| conserved hypothetical protein [Propionibacterium acnes HL027PA1] gi|314957447|gb|EFT01550.1| conserved hypothetical protein [Propionibacterium acnes HL002PA1] gi|314962085|gb|EFT06186.1| conserved hypothetical protein [Propionibacterium acnes HL002PA2] gi|314963664|gb|EFT07764.1| conserved hypothetical protein [Propionibacterium acnes HL082PA1] gi|314968508|gb|EFT12606.1| conserved hypothetical protein [Propionibacterium acnes HL037PA1] gi|314974196|gb|EFT18292.1| conserved hypothetical protein [Propionibacterium acnes HL053PA1] gi|314976695|gb|EFT20790.1| conserved hypothetical protein [Propionibacterium acnes HL045PA1] gi|314978821|gb|EFT22915.1| conserved hypothetical protein [Propionibacterium acnes HL072PA2] gi|314984333|gb|EFT28425.1| conserved hypothetical protein [Propionibacterium acnes HL005PA1] gi|314986522|gb|EFT30614.1| conserved hypothetical protein [Propionibacterium acnes HL005PA2] gi|314990881|gb|EFT34972.1| conserved hypothetical protein [Propionibacterium acnes HL005PA3] gi|315079514|gb|EFT51507.1| conserved hypothetical protein [Propionibacterium acnes HL053PA2] gi|315081256|gb|EFT53232.1| conserved hypothetical protein [Propionibacterium acnes HL078PA1] gi|315083454|gb|EFT55430.1| conserved hypothetical protein [Propionibacterium acnes HL027PA2] gi|315087140|gb|EFT59116.1| conserved hypothetical protein [Propionibacterium acnes HL002PA3] gi|315089312|gb|EFT61288.1| conserved hypothetical protein [Propionibacterium acnes HL072PA1] gi|315095335|gb|EFT67311.1| conserved hypothetical protein [Propionibacterium acnes HL038PA1] gi|315099218|gb|EFT71194.1| conserved hypothetical protein [Propionibacterium acnes HL059PA2] gi|315100431|gb|EFT72407.1| conserved hypothetical protein [Propionibacterium acnes HL046PA1] gi|315106775|gb|EFT78751.1| conserved hypothetical protein [Propionibacterium acnes HL030PA1] gi|327328402|gb|EGE70164.1| hypothetical protein HMPREF9338_01419 [Propionibacterium acnes HL096PA2] gi|327329732|gb|EGE71488.1| hypothetical protein HMPREF9337_01796 [Propionibacterium acnes HL096PA3] gi|327334249|gb|EGE75963.1| hypothetical protein HMPREF9344_01150 [Propionibacterium acnes HL097PA1] gi|327444189|gb|EGE90843.1| hypothetical protein HMPREF9571_02320 [Propionibacterium acnes HL043PA2] gi|327444932|gb|EGE91586.1| hypothetical protein HMPREF9570_01994 [Propionibacterium acnes HL043PA1] gi|327446417|gb|EGE93071.1| hypothetical protein HMPREF9568_00999 [Propionibacterium acnes HL013PA2] gi|327451994|gb|EGE98648.1| hypothetical protein HMPREF9584_02200 [Propionibacterium acnes HL092PA1] gi|327454969|gb|EGF01624.1| hypothetical protein HMPREF9581_01157 [Propionibacterium acnes HL087PA3] gi|327457745|gb|EGF04400.1| hypothetical protein HMPREF9586_00321 [Propionibacterium acnes HL083PA2] gi|328752172|gb|EGF65788.1| hypothetical protein HMPREF9563_02441 [Propionibacterium acnes HL020PA1] gi|328755196|gb|EGF68812.1| hypothetical protein HMPREF9579_01223 [Propionibacterium acnes HL087PA1] gi|328758324|gb|EGF71940.1| hypothetical protein HMPREF9588_00964 [Propionibacterium acnes HL025PA2] gi|328760060|gb|EGF73640.1| hypothetical protein HMPREF9343_02215 [Propionibacterium acnes HL099PA1] gi|332675924|gb|AEE72740.1| ribosome maturation factor RimP [Propionibacterium acnes 266] Length = 178 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 73/175 (41%), Gaps = 11/175 (6%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVER--DDG-NMTLRDCEELSQAIS 77 A ++ +++PV+ ++ ++ ++ + L+++ ++ DG +L + E + IS Sbjct: 3 AERLTRLLEPVVSQVGLELDRVDVVPAGRRRLVRVTIDGDGPDGHGPSLDEISEATAEIS 62 Query: 78 PILDVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK--QKLIGK 134 LD + E Y LEVSS G+ P+ + + R GH+V + + K + G+ Sbjct: 63 HCLDDSGAMGESPYTLEVSSRGVSTPLTQPRHYRRNIGHLVRFTLNPAEEQKSGETFDGR 122 Query: 135 IMGTSETGFFLEKEKRGEKDMNEL--QIAISFDSLLSARLIVTDELLRASLNNYG 187 I E LE E K + + + A +V EL R Sbjct: 123 IAEAGEEVVTLEVEAENSKPHKPVYTTREVQLADVAKA--VVQVELNRRDAQASK 175 >gi|167950227|ref|ZP_02537301.1| 15 kDa protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 79 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 43/73 (58%) Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LDVE+ I+ Y LEVSSPG+DRP+ +DF R+ G V + + G++++ G + G Sbjct: 1 MLDVEDPIKEKYDLEVSSPGLDRPLFEAADFERFKGQRVRVKTRMKIGNQRRFSGTLCGL 60 Query: 139 SETGFFLEKEKRG 151 LE++ + Sbjct: 61 EGNTILLEEDAQA 73 >gi|311898672|dbj|BAJ31080.1| hypothetical protein KSE_53040 [Kitasatospora setae KM-6054] Length = 184 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 71/155 (45%), Gaps = 8/155 (5%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + ++++P+ + ++ + + +QI V+ DG + L E S+ +S L Sbjct: 6 TDRLRALLEPLAADAGLDLEEVKVTQAGSRRQVQIDVD-ADGGVDLDAVAEFSRLVSRAL 64 Query: 81 DVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 D ++ E Y LEV SPG +RP+ + R G + A ++V D +L +++ + Sbjct: 65 DDSALMGETPYVLEVGSPGAERPLSEPRHWRRAVGRLAAVKLV----DGAELTARVLESD 120 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E G +E + + + + F + AR+ V Sbjct: 121 EDGALVEV-QPVKGRGRPKERRLEFAEVARARVQV 154 >gi|312194981|ref|YP_004015042.1| hypothetical protein FraEuI1c_1099 [Frankia sp. EuI1c] gi|311226317|gb|ADP79172.1| protein of unknown function DUF150 [Frankia sp. EuI1c] Length = 277 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 11/154 (7%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 +I + + F +SL +L++ V+RDDG + L + S+ IS +LD Sbjct: 22 AEIRDRLAEALARAGFDLDDLSLSRAGSRSVLRVAVDRDDG-IDLDAVADASRLISDLLD 80 Query: 82 VENI--IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 + + G Y LEV+SPG+DRP+ + R G +V V D ++G+++G Sbjct: 81 QVDEGGLAGAYVLEVTSPGVDRPLTEPRHWRRARGRLVEARRV----DGTVVLGRVLGAD 136 Query: 140 ETGFFLEKEKRGEKDMNELQIAIS---FDSLLSA 170 + G L + ++ I F + A Sbjct: 137 DEGVDLAVAAGPVRRGRPVKTKIERLRFADVARA 170 >gi|116073741|ref|ZP_01471003.1| hypothetical protein RS9916_34862 [Synechococcus sp. RS9916] gi|116069046|gb|EAU74798.1| hypothetical protein RS9916_34862 [Synechococcus sp. RS9916] Length = 155 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDG-NMTLRDCEELSQAISP 78 L D++SV + F + L + + +Q+ + R G ++TL DC LS + Sbjct: 5 LLPDLTSVAAATAAQQGFELADLQLHTHLRPMTVQVQIRRPGGVDVTLDDCAGLSGPMGD 64 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 ++ +++ Y LE+SSPGI + DF + G V I G Q L G ++ Sbjct: 65 AIEASSLLTDAYVLEISSPGIGDLVQSDRDFQTFRGFPVEVTINEGDGPPQTLSGSLLDR 124 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 S+ + + R +K I+ S+ RL Sbjct: 125 SDNHLEINMKGRIKK--------IARSSISCVRL 150 >gi|313829612|gb|EFS67326.1| conserved hypothetical protein [Propionibacterium acnes HL063PA2] gi|315109016|gb|EFT80992.1| conserved hypothetical protein [Propionibacterium acnes HL030PA2] Length = 178 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 72/175 (41%), Gaps = 11/175 (6%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVER--DDG-NMTLRDCEELSQAIS 77 A ++ +++PV+ ++ ++ ++ + L+++ ++ DG +L + E + IS Sbjct: 3 AERLTRLLEPVVSQVGLELDRVDVVPAGRRRLVRVTIDGDGPDGHGPSLDEISEATAEIS 62 Query: 78 PILDVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK--QKLIGK 134 LD + E Y LEVSS G+ P+ + + R GH+V + + K + G+ Sbjct: 63 HCLDDSGAMGESPYTLEVSSRGVSTPLTQPRHYRRNIGHLVRFTLNPAEEQKSGETFDGR 122 Query: 135 IMGTSETGFFLEKEKRGEKDMNE--LQIAISFDSLLSARLIVTDELLRASLNNYG 187 I E LE E K + + A +V EL R Sbjct: 123 IAEAGEEVVTLEVEAENSKPHKPLYTTREVQLADVAKA--VVQVELNRRDAQASK 175 >gi|313836821|gb|EFS74535.1| conserved hypothetical protein [Propionibacterium acnes HL037PA2] gi|314929770|gb|EFS93601.1| conserved hypothetical protein [Propionibacterium acnes HL044PA1] gi|314972199|gb|EFT16296.1| conserved hypothetical protein [Propionibacterium acnes HL037PA3] gi|328907627|gb|EGG27391.1| hypothetical protein PA08_0657 [Propionibacterium sp. P08] Length = 178 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 41/176 (23%), Positives = 72/176 (40%), Gaps = 13/176 (7%) Query: 22 AGDISSVIQPVIEEMSFRS--VQISLLEEKNLLLQIFVER--DDG-NMTLRDCEELSQAI 76 A ++S+++P + + V + + + L+++ V+ DG +L + E + I Sbjct: 3 AERLTSLLEPAVSRLGLELDCVDV-VPAGRRRLVRVTVDGDGPDGHGPSLDEISEATAEI 61 Query: 77 SPILDVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG--DKQKLIG 133 S LD + + E Y LEVSS G+ P+ + + R GH+V + S G + G Sbjct: 62 SRCLDDSDAMGESPYTLEVSSRGVSTPLTQPRHYRRNIGHLVRFTLNPSEGQTSGEAFDG 121 Query: 134 KIMGTSETGFFLEKEKRGEKDMNEL--QIAISFDSLLSARLIVTDELLRASLNNYG 187 +I E LE E K + + + A +V EL R Sbjct: 122 RITEAGEEVVTLEVEAGNSKPHKPVYTTREVQLADVAKA--VVQVELNRRDAQASK 175 >gi|218296561|ref|ZP_03497289.1| protein of unknown function DUF150 [Thermus aquaticus Y51MC23] gi|218243103|gb|EED09635.1| protein of unknown function DUF150 [Thermus aquaticus Y51MC23] Length = 141 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 8/121 (6%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 D+ +++ +E + + + E +L +D+ +T+ D E S+ I +LD E Sbjct: 2 DLWQLVEEAVEPLDLEV--LEVKEAPGEVLVRLERKDEKPITVADLERASRHIEAVLDRE 59 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I G YRL V SPG RP+ + F R+ G + + +G+I+ Sbjct: 60 DPIPGSYRLLVESPGPKRPLFTRRHFERFQG------LKAKVPGPEGFVGRILRVEGDEV 113 Query: 144 F 144 Sbjct: 114 V 114 >gi|116490509|ref|YP_810053.1| hypothetical protein OEOE_0429 [Oenococcus oeni PSU-1] gi|118587524|ref|ZP_01544948.1| conserved hypothetical protein [Oenococcus oeni ATCC BAA-1163] gi|290889909|ref|ZP_06552996.1| hypothetical protein AWRIB429_0386 [Oenococcus oeni AWRIB429] gi|122277304|sp|Q04GN4|RIMP_OENOB RecName: Full=Ribosome maturation factor rimP gi|116091234|gb|ABJ56388.1| hypothetical protein OEOE_0429 [Oenococcus oeni PSU-1] gi|118431975|gb|EAV38717.1| conserved hypothetical protein [Oenococcus oeni ATCC BAA-1163] gi|290480519|gb|EFD89156.1| hypothetical protein AWRIB429_0386 [Oenococcus oeni AWRIB429] Length = 156 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 3/143 (2%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDD-GNMTLRDCEELSQAISPIL 80 I IQP++ E +S +L I ++ D + + E++ IS L Sbjct: 6 IDTIKEKIQPILSEKHLLLWDLSFFGGSPAVLTILIDGQDHQAIRMNQISEVTSLISDAL 65 Query: 81 D--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 D + Y L++SSPGIDR + G + + + G + Sbjct: 66 DKVEPDPFPDRYNLDISSPGIDRSIKTDEHLDWALGQPIKLNLFEKIDGSKSAEGILKSF 125 Query: 139 SETGFFLEKEKRGEKDMNELQIA 161 S+ LE K+ +I+ Sbjct: 126 SDLEISLEVSPAEVKNFPREKIS 148 >gi|302558073|ref|ZP_07310415.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000] gi|302475691|gb|EFL38784.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000] Length = 173 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 72/155 (46%), Gaps = 9/155 (5%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + +++P++ +I++ + +L++ V+ D G L ++S+A+S L Sbjct: 6 SERLRELLEPLVSSQGLDLEEIAVDSVGRKRVLRVVVDSDTGA-DLDRIADVSRALSAKL 64 Query: 81 DVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 D + + Y LEV +PG +R + ++R G +V ++ + +L +I+ Sbjct: 65 DETDAMGSAEYTLEVGTPGAERLLTEHRHYVRATGRLVRFQL----AEGGELDARILRAD 120 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + G LE G K ++FD + AR+ V Sbjct: 121 DEGLDLEV--PGVKGRKATARRLAFDDITRARVQV 153 >gi|284036132|ref|YP_003386062.1| hypothetical protein Slin_1213 [Spirosoma linguale DSM 74] gi|283815425|gb|ADB37263.1| protein of unknown function DUF150 [Spirosoma linguale DSM 74] Length = 170 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 71/173 (41%), Gaps = 21/173 (12%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFV--ERDDGNMTLRDCEELSQAI 76 M I+ ++QP ++ F V I + + L++ + + D G +T+ DC ++S+ + Sbjct: 1 MDDKAKITELLQPYLKNDLFYIVDIQVAGRQGGRLKVTILLDSDAG-ITIDDCADISRRL 59 Query: 77 SPILDVENIIEGH-YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +D N + LE+SSPG+D P+ F+R G + + K G + Sbjct: 60 GGQMDEMNFFGDSPFTLEISSPGVDYPLTFSRQFVRNVGRQLIVTLTDGVIRK----GVL 115 Query: 136 MGTSETGFFLEKEKRGEKDMNELQ-------------IAISFDSLLSARLIVT 175 +E L+ E + + + I F + A++ V+ Sbjct: 116 ESVAEDHIVLDIEAEKKSKSKKKKDADVSPDLQPVGPTPILFGQIKKAQVEVS 168 >gi|297565904|ref|YP_003684876.1| hypothetical protein Mesil_1476 [Meiothermus silvanus DSM 9946] gi|296850353|gb|ADH63368.1| protein of unknown function DUF150 [Meiothermus silvanus DSM 9946] Length = 143 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 7/120 (5%) Query: 27 SVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVE-RDDGNMTLRDCEELSQAISPILDVEN 84 V Q ++ M + +++SL N +L + +E +D+ +++ + E S+ + LD + Sbjct: 2 EVAQDLLGPMGYDVLEVSLKGSGNSRVLTVRLERKDEVPISVEELERASRVLGSELDRLD 61 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 +IE YRLEV SPG DRP++ F R+ G + ++ G+ G+I G SE Sbjct: 62 LIESAYRLEVESPGPDRPLLTPRHFERFAG--LKAKVRSPEGN---FTGRIEGVSEDTVT 116 >gi|312880099|ref|ZP_07739899.1| protein of unknown function DUF150 [Aminomonas paucivorans DSM 12260] gi|310783390|gb|EFQ23788.1| protein of unknown function DUF150 [Aminomonas paucivorans DSM 12260] Length = 151 Score = 101 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 73/154 (47%), Gaps = 13/154 (8%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 L + + + ++ + ++ + + + E +L++ ++ +G ++L+DCE ++ ++ Sbjct: 5 LRPPLEAEFRKLVGGLGYQCLALEKVREGGRLVLRLTLD-VEGGISLQDCETAAREVNAF 63 Query: 80 LDVEN-IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LD + + LEVSSPG +RP+VR D+ R+ G + K++++ I Sbjct: 64 LDEHDEAFSEPFFLEVSSPGPERPLVRLEDYRRFRGEWIRISWK---NGKKRVLC-IDDV 119 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 E G + + GE + + + + RL Sbjct: 120 GEDGVVTLRSREGEV------LQLPWTEIRRPRL 147 >gi|326771739|ref|ZP_08231024.1| YhbC family protein [Actinomyces viscosus C505] gi|326637872|gb|EGE38773.1| YhbC family protein [Actinomyces viscosus C505] Length = 172 Score = 101 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 72/169 (42%), Gaps = 10/169 (5%) Query: 10 KYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGN--MTL 66 + +PR D LA ++ ++ P++ + + ++++FV+ DG + L Sbjct: 7 RKDPRQRAD-ALARSLTDLLAPIVNDAGLHLESVETTRAGKYSVVRVFVDLVDGPGDLDL 65 Query: 67 RDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 ++ AIS LD + ++G Y LEVS+PG +R + F R GH Sbjct: 66 DALGPVTAAISQALDEADPVKGQYTLEVSTPGAERELTTLRHFRRAVGHSARVGTADD-- 123 Query: 127 DKQKLIGKIMGTSETGFFLEKEKR-GEKDMNELQIAISFDSLLSARLIV 174 +LIG + + +++ ++ I+ + AR++V Sbjct: 124 ---ELIGLVTAADADDEADDHNGGMVGIEVDGVEHRIALGDITEARMVV 169 >gi|290957022|ref|YP_003488204.1| hypothetical protein SCAB_25381 [Streptomyces scabiei 87.22] gi|260646548|emb|CBG69645.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length = 169 Score = 101 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 71/155 (45%), Gaps = 9/155 (5%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + +++P++ +I++ + +L++ V+ D+G L ++S+A+S L Sbjct: 6 SERLRELLEPLVRSQGLDLEEIAVDSVGRKRVLRVVVDSDEGA-DLDAVADVSRALSAKL 64 Query: 81 DVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 D + + + Y LEV +PG +R + + R +V + +LI +I+ Sbjct: 65 DETDAMGQSEYTLEVGTPGAERALTEHRHYRRAVDRLVKFTLREDG----ELIARILTVD 120 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + G LE G K ++FD + AR+ V Sbjct: 121 DEGLDLEV--PGVKGRRATSRRLAFDEIDRARVQV 153 >gi|315928474|gb|EFV07784.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni 305] Length = 114 Score = 101 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 7/109 (6%) Query: 29 IQPVIEEMSFRSVQISLLEEKNL-LLQIFVERD------DGNMTLRDCEELSQAISPILD 81 ++ + +E++ L E + +++V + + L DC LS+ +SPI D Sbjct: 3 LEALCKEVNLELYDSELTSENGKKIYRVYVMKPLDEKGERRGVNLDDCARLSEILSPIFD 62 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 VE + G Y LEVSS G++R + + F + +V KQK Sbjct: 63 VEPPVSGEYFLEVSSAGLERKLSKIEHFAKSINELVKITTGEKEKSKQK 111 >gi|78213594|ref|YP_382373.1| hypothetical protein Syncc9605_2078 [Synechococcus sp. CC9605] gi|123577663|sp|Q3AHW4|RIMP_SYNSC RecName: Full=Ribosome maturation factor rimP gi|78198053|gb|ABB35818.1| conserved hypothetical protein [Synechococcus sp. CC9605] Length = 155 Score = 101 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 57/146 (39%), Gaps = 2/146 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDG-NMTLRDCEELSQAISP 78 L D+ ++ V F I LL + L++ + G +++L DC S + Sbjct: 5 LLPDLETLATKVAASKGFALCGIQLLTHMSPMTLEVQIRHSSGADVSLDDCAGFSGVLGD 64 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 L+ ++ Y LE+SSPGI + DF + G V +Q+L G ++ Sbjct: 65 ALEASTLLTDAYVLEISSPGIGDQLSSDRDFETFRGFPVEVHHRDKDDSEQRLEGLLLER 124 Query: 139 SETGFFLEKEKRGEKDMNELQIAISF 164 + R ++ + I + Sbjct: 125 DADTLQINIRGRIKRIARDCVIGVRL 150 >gi|33865135|ref|NP_896694.1| hypothetical protein SYNW0601 [Synechococcus sp. WH 8102] gi|33638819|emb|CAE07116.1| conserved hypothetical protein [Synechococcus sp. WH 8102] Length = 166 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 34/148 (22%), Positives = 61/148 (41%), Gaps = 10/148 (6%) Query: 27 SVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDG-NMTLRDCEELSQAISPILDVEN 84 ++ V + F I LL + L++ + R +G ++ + DC S + L+ Sbjct: 22 TLATSVAADQGFELCGIQLLTHLAPMTLEVHIRRSNGVDVNMDDCAGFSGTLGEALESAQ 81 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 ++ Y LE+SSPGI + DF + G V +Q+L G ++ E Sbjct: 82 LLTEAYVLEISSPGIGETLSSDRDFQTFRGFPVEVVHRDRDDTEQRLEGLLLERDEDTLQ 141 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARL 172 + R ++ + D +LS RL Sbjct: 142 INIRGRIKR--------LPRDHVLSVRL 161 >gi|213864825|ref|ZP_03386944.1| hypothetical protein SentesT_33610 [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 82 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 8/85 (9%) Query: 89 HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKE 148 Y LEVSSPG+DRP+ + R+ G V + ++ +++K G I + E Sbjct: 3 AYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVE 62 Query: 149 KRGEKDMNELQIAISFDSLLSARLI 173 + E + ++ A L+ Sbjct: 63 GKDEV--------FALSNIQKANLV 79 >gi|325282975|ref|YP_004255516.1| Ribosome maturation factor rimP [Deinococcus proteolyticus MRP] gi|324314784|gb|ADY25899.1| Ribosome maturation factor rimP [Deinococcus proteolyticus MRP] Length = 150 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 55/138 (39%), Gaps = 15/138 (10%) Query: 38 FRSVQISLLEE-KNLLLQIFVER-DDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVS 95 + +++ + +L + ++R D+ +++ D E ++ +S LD + I G YRLEV Sbjct: 19 YELLEVQMQNASGRPVLLVRIDRADEQPVSVDDIERATRRLSLWLDEADPIGGEYRLEVE 78 Query: 96 SPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDM 155 SPG RP++R F R G G + I S + +G+ + Sbjct: 79 SPGAKRPLLRTRHFERMLGLKAKVR-----GGEHAFTAPIKAVSGETVTFDVPGQGDVTL 133 Query: 156 NELQIAISFDSLLSARLI 173 I A L Sbjct: 134 RIADI--------KANLA 143 >gi|307331527|ref|ZP_07610640.1| protein of unknown function DUF150 [Streptomyces violaceusniger Tu 4113] gi|306882844|gb|EFN13917.1| protein of unknown function DUF150 [Streptomyces violaceusniger Tu 4113] Length = 174 Score = 100 bits (251), Expect = 7e-20, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 66/152 (43%), Gaps = 7/152 (4%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + + +++P++ ++ + + V D + L C ELS+ IS LD Sbjct: 6 SERLRGLLEPLVSARDLDLEEVEVTPAGRRRVLRVVVDSDDGVQLDTCAELSRDISQTLD 65 Query: 82 VENIIEG-HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + + Y LEV+SPG +RP+ + R G ++ + + +L+ +I+ + Sbjct: 66 DTDAMGQVAYVLEVTSPGAERPLTEPRHYRRATGRLMRARLTDDA----ELVARIVSVDD 121 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G LE G K ++F+ + AR+ Sbjct: 122 EGLDLEV--PGVKGRKPTARRLAFEEISKARV 151 >gi|296269041|ref|YP_003651673.1| hypothetical protein Tbis_1058 [Thermobispora bispora DSM 43833] gi|296091828|gb|ADG87780.1| protein of unknown function DUF150 [Thermobispora bispora DSM 43833] Length = 171 Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 70/160 (43%), Gaps = 16/160 (10%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G G + ++ PV+E +++ + V DG +T+ + ++S++ Sbjct: 1 MGSDARRGRLVELLGPVVEAKGLDLEDVTITSAGRRRIVRVVVDRDGGVTVDEIADVSRS 60 Query: 76 ISPILDVENIIEGH-YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 +S LD +++ Y LEV+SPG+DRP+ + + R G +V + D + G+ Sbjct: 61 VSDRLDEVDVLGDAPYVLEVTSPGVDRPLTEQRHWRRARGLLVKAVLR----DGGTVEGR 116 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 I +ET L+ +R I L+ R+ + Sbjct: 117 ITDVTETEVELDGTRR-----------IPLADLVKGRVQL 145 >gi|297623579|ref|YP_003705013.1| hypothetical protein Trad_1348 [Truepera radiovictrix DSM 17093] gi|297164759|gb|ADI14470.1| protein of unknown function DUF150 [Truepera radiovictrix DSM 17093] Length = 146 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 18/153 (11%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEE---KNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 D+ + ++E + + +++ + +N+LL+I RD G +T+ D E +Q S L Sbjct: 2 DLQRAAEQLLEPLGYEVLELVVSGRGGKRNVLLRID-RRDRGVVTMEDVERATQVFSLEL 60 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D + EG YRLEV SPG +RP+ F R++G + + G+++ S+ Sbjct: 61 DRLDPFEGAYRLEVESPGPERPLRTAEHFRRFSGLLAKVRAH-----GETFTGRVVEVSD 115 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 D++ ++ + + ARL Sbjct: 116 AQVT--------FDVHGQPRTLALEDI-QARLA 139 >gi|226366089|ref|YP_002783872.1| hypothetical protein ROP_66800 [Rhodococcus opacus B4] gi|254806567|sp|C1B310|RIMP_RHOOB RecName: Full=Ribosome maturation factor rimP gi|226244579|dbj|BAH54927.1| hypothetical protein [Rhodococcus opacus B4] Length = 190 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 65/150 (43%), Gaps = 12/150 (8%) Query: 23 GDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 ++ +I +++ + +++ L K+ ++I V+ D G + L LS IS + D Sbjct: 7 ERVTELISDLVQRQGYDVEDVAVTLAGKHSAVRIMVDSDAG-LELDAVANLSHEISEVFD 65 Query: 82 -VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 V + E Y LEV+SPGIDRP+ + + R G ++ + ++G+I Sbjct: 66 SVSDFGESPYTLEVTSPGIDRPLTHERHWRRARGRKARIDLAH-----ETVVGRIGALDG 120 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 + R D+ I+ + A Sbjct: 121 DSVAVVIGSRTGPDVR----RIALADIQKA 146 >gi|331698437|ref|YP_004334676.1| ribosome maturation factor rimP [Pseudonocardia dioxanivorans CB1190] gi|326953126|gb|AEA26823.1| Ribosome maturation factor rimP [Pseudonocardia dioxanivorans CB1190] Length = 176 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 16/154 (10%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDG--NMTLRDCEELSQAIS 77 L + V++P++ F ++ + + +++ V+ D + L D LS+A S Sbjct: 7 LGRQLQDVLEPIVAGAGFELDELDVRATGRRHTVKVVVDSADEAAGVNLDDIARLSRAAS 66 Query: 78 PILDV-ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 LD E++I G Y LEV+SPGIDRP+ + + R +V +V + KL G+I Sbjct: 67 AELDQHEHLIGGSYTLEVTSPGIDRPLTQPRHWRRAYLRLVEVTLV----EGGKLAGRIG 122 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 E + + ++++ + A Sbjct: 123 RAGEDAVDVLVDGSVR--------SVAYADVAKA 148 >gi|148243066|ref|YP_001228223.1| hypothetical protein SynRCC307_1967 [Synechococcus sp. RCC307] gi|147851376|emb|CAK28870.1| Conserved hypothetical protein [Synechococcus sp. RCC307] Length = 185 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 64/162 (39%), Gaps = 11/162 (6%) Query: 13 PRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDG-NMTLRDCE 70 PR L I ++ + + F + L + L + V + DG ++ L DC Sbjct: 28 PRALAHPPLEP-IEALASATAQSLGFLMESVVLHSHRAPQALIVAVRKGDGSDVNLDDCA 86 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 SQA L+ ++ G Y LE++SPG+ + + DF + G V + G + + Sbjct: 87 SFSQAFGEALETGELLTGAYVLEITSPGLGDVLQQDRDFRSFRGFPVCVRQRDAKGGEIQ 146 Query: 131 LIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G ++G L R ++ I +L RL Sbjct: 147 REGTLLGRDADAVELNLRGRIQR--------IPRSDVLEVRL 180 >gi|256396851|ref|YP_003118415.1| hypothetical protein Caci_7750 [Catenulispora acidiphila DSM 44928] gi|256363077|gb|ACU76574.1| protein of unknown function DUF150 [Catenulispora acidiphila DSM 44928] Length = 203 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 68/157 (43%), Gaps = 10/157 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 G A + ++++PV+ + + + + V D ++L ++++ +S + Sbjct: 8 GPADRLQALLEPVVAAAGYDLESVRVSQVARRRRVEVVVDGDDGVSLDAVSDITRVVSDV 67 Query: 80 LDVENII----EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + E Y LEV SPG DRP+ + R G +V + + + G++ Sbjct: 68 LDAPEGVAVMGEQPYVLEVGSPGTDRPLTLPKHWRRAKGRLVRALLR----NGGDVTGRV 123 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + G LE + + E ++ + + AR+ Sbjct: 124 LDSDDEGVLLEVPGKKKGQTEERRLE--YSEVAKARV 158 >gi|260436689|ref|ZP_05790659.1| conserved hypothetical protein [Synechococcus sp. WH 8109] gi|260414563|gb|EEX07859.1| conserved hypothetical protein [Synechococcus sp. WH 8109] Length = 155 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 62/154 (40%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDG-NMTLRDCEELSQAISP 78 L D+ +++ V F I LL + L++ + G +++L DC S + Sbjct: 5 LLPDLETLVTDVASSKGFALCGIQLLTHMSPMTLEVQIRHSSGADVSLDDCAGFSGVLGD 64 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 L+ ++ Y LE+SSPGI + DF + G V + +Q+L G ++ Sbjct: 65 ALEASTLLTDAYVLEISSPGIGDQLSSDRDFETFRGFPVEVHHRDNDDSEQRLEGLLLER 124 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + R ++ I D ++ RL Sbjct: 125 DADTLQINIRGRIKR--------IPRDCVIGVRL 150 >gi|121609703|ref|YP_997510.1| hypothetical protein Veis_2751 [Verminephrobacter eiseniae EF01-2] gi|121554343|gb|ABM58492.1| protein of unknown function DUF150 [Verminephrobacter eiseniae EF01-2] Length = 295 Score = 99.8 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 40/247 (16%), Positives = 83/247 (33%), Gaps = 84/247 (34%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVE-------------RDDGNMTLR---- 67 + +++P++ + + V+I LL++ ++ DG + L Sbjct: 53 LQQIVEPIVTGLGYALVEIE--RSAGGLLRVTIDLPWPAPNGAAAEPAPDGALALEPAPS 110 Query: 68 -------------------------------------------DCEELSQAISPILDVEN 84 DCE++++ + L+V+ Sbjct: 111 GAGTLDTAPDGATALETVPSGATALETAPNGAVSTPAQSVTLEDCEKVTRQLQFALEVDG 170 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD---------KQKLIGKI 135 + + RLEV+SPGIDRP+ + D LR+ G V+ + G ++K G + Sbjct: 171 V--QYQRLEVASPGIDRPLRGEQDLLRFAGSVIDITLKAPIGGAAAGKVGATRKKFRGTL 228 Query: 136 MGTSETGFFL-----------EKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLN 184 T+ G+ + ++ + + S D + RL + + Sbjct: 229 ERTASGGWQIVWSDAPPPKPGQRVGKKRLPAPLQALGFSLDEVRDMRLAPIVDFKGRTGK 288 Query: 185 NYGSYAG 191 + AG Sbjct: 289 AGAAPAG 295 >gi|311748746|ref|ZP_07722531.1| hypothetical protein ALPR1_20868 [Algoriphagus sp. PR1] gi|126577280|gb|EAZ81528.1| hypothetical protein ALPR1_20868 [Algoriphagus sp. PR1] Length = 157 Score = 99.8 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 38/151 (25%), Positives = 77/151 (50%), Gaps = 7/151 (4%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L I +++ + + S V+++L+ + +L I ++ D G + ++ C +S+A++ Sbjct: 4 LKQAIEEIVEKHLPDESHFVVEVNLVPKSGKTVLSILIDADQG-LNVQTCANVSRAVAEE 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 L+ + ++ Y LEVSSPG+D P+ + F + G + + Q+L GK++ Sbjct: 63 LEAKELMSEAYILEVSSPGVDYPLSSRRQFQKNIGRELKVLLTS----GQELKGKLLEVD 118 Query: 140 ETGF-FLEKEKRGEKDMNELQIAISFDSLLS 169 TG L K+K K E ++ +SF+ + Sbjct: 119 TTGVKMLVKKKEKGKKATEEEVVLSFEEMKK 149 >gi|320531906|ref|ZP_08032816.1| conserved domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320135875|gb|EFW27913.1| conserved domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 172 Score = 99.0 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 67/169 (39%), Gaps = 10/169 (5%) Query: 10 KYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDD---GNMTL 66 + +PR D LA ++ ++ PV+ + + + + G++ L Sbjct: 7 RQDPRKRAD-ALARSLTDLLVPVVNDAGLHLEGVETTRAGKYSVVRVLVDLVDGPGDLDL 65 Query: 67 RDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 ++ A+S LD + ++G Y LEVS+PG +R + F R GH V Sbjct: 66 DSLGPVTAAVSQALDEADPVKGQYTLEVSTPGAERELTTLRHFRRAVGHSVRVRTADD-- 123 Query: 127 DKQKLIGKIMGTSETGFFLEKEKR-GEKDMNELQIAISFDSLLSARLIV 174 +L G + G E ++ ++ I+ + AR++V Sbjct: 124 ---ELTGVVTAADGDGDASEHNGGMVRIKVDGVEDRIALGDITEARMVV 169 >gi|119717417|ref|YP_924382.1| hypothetical protein Noca_3193 [Nocardioides sp. JS614] gi|166988630|sp|A1SLL0|RIMP_NOCSJ RecName: Full=Ribosome maturation factor rimP gi|119538078|gb|ABL82695.1| protein of unknown function DUF150 [Nocardioides sp. JS614] Length = 175 Score = 98.6 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 32/150 (21%), Positives = 69/150 (46%), Gaps = 15/150 (10%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 G I + + + + + + K +L++ V++ DG +TL + E ++ ++ +LD Sbjct: 11 GQIEAELDDPLRALGLDIEAVEITPAGKRRILRVAVDK-DGGVTLDEVAEATREVNRVLD 69 Query: 82 VENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 ++ E Y LEV+S G+DRP+ + R G +V + D + G+I+ ++E Sbjct: 70 GSEVMGEQPYTLEVTSRGVDRPLTLPRHWRRNAGRLVKV----AFADGRAATGRILDSNE 125 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 L D+ + +++ + A Sbjct: 126 EQVTL--------DVGGTRQQVAYAEVKKA 147 >gi|213852789|ref|ZP_03382321.1| hypothetical protein SentesT_07966 [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 82 Score = 98.6 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 8/85 (9%) Query: 89 HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKE 148 Y LEVSSPG+DRPM + R+ G VA + ++ +++K G I + E Sbjct: 3 AYNLEVSSPGLDRPMFTADHYARFQGEEVALVLRMAVQNRRKWQGIIKAVDGEMITVTVE 62 Query: 149 KRGEKDMNELQIAISFDSLLSARLI 173 + E + ++ A L+ Sbjct: 63 GKDEV--------FALSNIQKANLV 79 >gi|302338536|ref|YP_003803742.1| protein of unknown function DUF150 [Spirochaeta smaragdinae DSM 11293] gi|301635721|gb|ADK81148.1| protein of unknown function DUF150 [Spirochaeta smaragdinae DSM 11293] Length = 175 Score = 98.6 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 78/152 (51%), Gaps = 12/152 (7%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 G ++ ++P+IE + +++V+++ + + + + D + L DCE++ +AI P L+ Sbjct: 28 GPLTGELEPIIEGLGYKTVEVAAKKTGSRHHVSVIISGRDSGIGLTDCEKVHKAILPRLE 87 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + Y EVSSPGI R + ++F + G +V + G+ + ++G+IM + E Sbjct: 88 ILLDDRDIYV-EVSSPGISRNLKCGAEFGIFVGSLVRLLL---EGENEWIVGRIMESDER 143 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 +E ++D +D++ A+L+ Sbjct: 144 KVVIEMSDGKKEDYL-------YDTIRKAKLV 168 >gi|325105521|ref|YP_004275175.1| protein of unknown function DUF150 [Pedobacter saltans DSM 12145] gi|324974369|gb|ADY53353.1| protein of unknown function DUF150 [Pedobacter saltans DSM 12145] Length = 153 Score = 98.2 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 77/159 (48%), Gaps = 10/159 (6%) Query: 19 MGLAGDISSVIQPVIEE-MSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M + + + + +++ V + + +K LL ++ D+G +T+ DC ++S+ + Sbjct: 1 MSVEQRVRELAEEKLQDREDLFIVSVKVQNKKITLL---LDGDNG-ITIEDCAKVSRHVG 56 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 L+ EN++ Y+LEV S G+D +V + + G + + + + GK++G Sbjct: 57 YHLEEENLMTEAYQLEVGSAGLDAALVLDRQYQKNIGRNLLVK---KVDGSK-IEGKLIG 112 Query: 138 TSETGFFLEKE-KRGEKDMNELQIAISFDSLLSARLIVT 175 + T + E K K ++ I +++ SA++ ++ Sbjct: 113 ANPTNLVISHEVKEKGKKAQTVETVIEKENIASAKVSIS 151 >gi|317125352|ref|YP_004099464.1| hypothetical protein Intca_2228 [Intrasporangium calvum DSM 43043] gi|315589440|gb|ADU48737.1| protein of unknown function DUF150 [Intrasporangium calvum DSM 43043] Length = 197 Score = 98.2 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 41/188 (21%), Positives = 80/188 (42%), Gaps = 23/188 (12%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNM------------T 65 M I + I+P + + +++ + K ++++ V+ D + + Sbjct: 1 MSTVEQIRATIEPALVSLGLVIDDLAVNQAGKRRMVRVLVDSDIAGLDPSDATSPVPPLS 60 Query: 66 LRDCEELSQAISPILDVENIIEG-HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS 124 L D + ++A+S LD +++ Y LEVSSPG+ RP+ + DF R G +V Sbjct: 61 LDDIADATRAVSTRLDDSDVMGSMPYVLEVSSPGVGRPLRSRHDFRRQVGRLVDV----- 115 Query: 125 SGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLN 184 + + + G+++ L+ K Q+ ++ DS+ A + V E RA + Sbjct: 116 AHEGGSVTGRLIEVHPDRLVLQV--PATKKAAGHQLTLALDSVHQATVQV--EFKRAEVE 171 Query: 185 NYGSYAGL 192 A L Sbjct: 172 AAHPQAAL 179 >gi|326335428|ref|ZP_08201615.1| hypothetical protein HMPREF9071_1081 [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692194|gb|EGD34146.1| hypothetical protein HMPREF9071_1081 [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 154 Score = 98.2 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 16/162 (9%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 M L + +I ++E I K L+++ ++ D+G + + DC LS+AI Sbjct: 1 MNLKERVKYLIDKALKENP-SLFLIEYSIGKGNLIKVIIDGDNG-VNIDDCVILSRAIEH 58 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LD E E + LEVSS GI P+ ++ +++ G V E + K IG I Sbjct: 59 NLDRE---EEDFSLEVSSCGIFAPLTQERQYIKNIGREVEIETTET-----KYIGVIKEV 110 Query: 139 SETGFFLEKEKR------GEKDMNELQIAISFDSLLSARLIV 174 E LE R K I + +++ +L + Sbjct: 111 HEGKVSLEVTSRQPKANGKGKTTITETIVLPINNIKETKLKL 152 >gi|325000942|ref|ZP_08122054.1| ribosome maturation protein RimP [Pseudonocardia sp. P1] Length = 209 Score = 98.2 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 14/160 (8%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDG----NMTLRDCEELSQA 75 LA + V++PV+ + + + +++ V+ + + L D LS+ Sbjct: 23 LADQLRGVLEPVVTDAGLEIDAVEVRTAGRRHAVKLVVDLPEASTATGIDLDDIARLSRT 82 Query: 76 ISPILD-VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 + LD E++IEG Y LEV+SPGIDRP+ + R + + L + Sbjct: 83 AAAELDPHEHLIEGSYTLEVTSPGIDRPLTTPRHWRRNFLRLARITLAGGDD----LEAR 138 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 I + + R + ++ E I++D + A++ V Sbjct: 139 IGRAGDDRVQVAVPGRKQPELRE----IAYDDVTHAQVQV 174 >gi|148240412|ref|YP_001225799.1| hypothetical protein SynWH7803_2076 [Synechococcus sp. WH 7803] gi|166980273|sp|A5GNI7|RIMP_SYNPW RecName: Full=Ribosome maturation factor rimP gi|147848951|emb|CAK24502.1| Conserved hypothetical protein [Synechococcus sp. WH 7803] Length = 155 Score = 97.8 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 33/146 (22%), Positives = 63/146 (43%), Gaps = 2/146 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDG-NMTLRDCEELSQAISP 78 L DI+ V F V+I +L + + +Q+ + R DG +++L DC S + Sbjct: 5 LLPDITPVAASTAAAHGFELVEIQILTHLQPMTVQVQIRRTDGSDVSLDDCAGFSGPMGE 64 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 L+ + ++ Y LE+SSPGI + DF + + V G +Q+ G ++ Sbjct: 65 ALESQALLTEAYVLEISSPGIGEQLQSDRDFQTFRSYPVEVLYRDDEGREQRQQGSLLER 124 Query: 139 SETGFFLEKEKRGEKDMNELQIAISF 164 + + R ++ I++ Sbjct: 125 NADHVQVNVRGRIKRIARASVISVQL 150 >gi|257055489|ref|YP_003133321.1| hypothetical protein Svir_14540 [Saccharomonospora viridis DSM 43017] gi|256585361|gb|ACU96494.1| uncharacterized conserved protein [Saccharomonospora viridis DSM 43017] Length = 179 Score = 97.8 bits (243), Expect = 7e-19, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 65/152 (42%), Gaps = 15/152 (9%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 LA + ++ + F + + + + L+++ V+ D+G + L E+S+A+S + Sbjct: 5 LASRLEPLVAEAVGAAGFDLDALDVQQAGRRKLVKVVVDGDEG-VELDKVAEISRAVSAV 63 Query: 80 LDVEN-IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LD + +I G Y LEV+SPG+DRP+ + + R +V IG++ Sbjct: 64 LDQHDHLIAGAYTLEVTSPGLDRPLTKPRHWRRSRNRLVRVTPKEGPA----YIGRVGAA 119 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 E + + + + + A Sbjct: 120 GEDSVRILVDGEIRD--------LRYADVRKA 143 >gi|303326258|ref|ZP_07356701.1| transcription elongation factor [Desulfovibrio sp. 3_1_syn3] gi|302864174|gb|EFL87105.1| transcription elongation factor [Desulfovibrio sp. 3_1_syn3] Length = 156 Score = 97.8 bits (243), Expect = 7e-19, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 52/127 (40%), Gaps = 17/127 (13%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDG------------- 62 + L + + +PV+ + + +++ + +++FV+ G Sbjct: 23 MSENALKETVIRLAEPVVRSLGLVIWGVEVVQAGRMAVRLFVDVPSGAPESLQAADGEEN 82 Query: 63 ----NMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVA 118 + ++ CEE+S+ + L+VE+ + Y LEVS+PG+ R + G +V Sbjct: 83 EAPTSASIGQCEEISRHLGLALEVEDAVPSAYVLEVSTPGLTRLFFSLDQMRPYLGDMVE 142 Query: 119 CEIVLSS 125 + Sbjct: 143 ARLHAPV 149 >gi|259645134|sp|A5GVG1|RIMP_SYNR3 RecName: Full=Ribosome maturation factor rimP Length = 155 Score = 97.4 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 61/152 (40%), Gaps = 10/152 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDG-NMTLRDCEELSQAISPIL 80 I ++ + + F + L + L + V + DG ++ L DC SQA L Sbjct: 7 EPIEALASATAQSLGFLMESVVLHSHRAPQALIVAVRKGDGSDVNLDDCASFSQAFGEAL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + ++ G Y LE++SPG+ + + DF + G V + G + + G ++G Sbjct: 67 ETGELLTGAYVLEITSPGLGDVLQQDRDFRSFRGFPVCVRQRDAKGGEIQREGTLLGRDA 126 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 L R ++ I +L RL Sbjct: 127 DAVELNLRGRIQR--------IPRSDVLEVRL 150 >gi|320449996|ref|YP_004202092.1| 15 kDa protein [Thermus scotoductus SA-01] gi|320150165|gb|ADW21543.1| 15 kDa protein [Thermus scotoductus SA-01] Length = 141 Score = 97.4 bits (242), Expect = 9e-19, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 8/130 (6%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 D+ +++ +E + + + E +L +D+ + + D E S+AI + D E Sbjct: 2 DLWRLVEEAVEPLDLEV--LEVKEAPGEVLVRLERKDERPIRVADLERASRAIEAVFDQE 59 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I G YRL V SPG RP+ + F R+ G + + G+I+ Sbjct: 60 DPIPGSYRLLVESPGPKRPLFTRRHFERFQG------LKAKVPGPEGFTGRILRVEGDEV 113 Query: 144 FLEKEKRGEK 153 + + ++ Sbjct: 114 VFQVGQEEKR 123 >gi|259645270|sp|A1WLI5|RIMP_VEREI RecName: Full=Ribosome maturation factor rimP Length = 245 Score = 97.1 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 40/247 (16%), Positives = 83/247 (33%), Gaps = 84/247 (34%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVE-------------RDDGNMTLR---- 67 + +++P++ + + V+I LL++ ++ DG + L Sbjct: 3 LQQIVEPIVTGLGYALVEIE--RSAGGLLRVTIDLPWPAPNGAAAEPAPDGALALEPAPS 60 Query: 68 -------------------------------------------DCEELSQAISPILDVEN 84 DCE++++ + L+V+ Sbjct: 61 GAGTLDTAPDGATALETVPSGATALETAPNGAVSTPAQSVTLEDCEKVTRQLQFALEVDG 120 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD---------KQKLIGKI 135 + + RLEV+SPGIDRP+ + D LR+ G V+ + G ++K G + Sbjct: 121 V--QYQRLEVASPGIDRPLRGEQDLLRFAGSVIDITLKAPIGGAAAGKVGATRKKFRGTL 178 Query: 136 MGTSETGFFL-----------EKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLN 184 T+ G+ + ++ + + S D + RL + + Sbjct: 179 ERTASGGWQIVWSDAPPPKPGQRVGKKRLPAPLQALGFSLDEVRDMRLAPIVDFKGRTGK 238 Query: 185 NYGSYAG 191 + AG Sbjct: 239 AGAAPAG 245 >gi|320334651|ref|YP_004171362.1| ribosome maturation factor rimP [Deinococcus maricopensis DSM 21211] gi|319755940|gb|ADV67697.1| Ribosome maturation factor rimP [Deinococcus maricopensis DSM 21211] Length = 147 Score = 97.1 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 7/122 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVER-DDGNMTLRDCEELSQAISPILDV 82 + + + + + +++ L + L + ++R D+ +T+ D E S+ + LD Sbjct: 4 LEQLATEALSPLGYEVLEVHLQNPGRRPTLLVRIDRLDEQPVTVDDLETASKLLGLELDR 63 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 + I+G YRLE+ SPG RP+ R F R G G+ I+ Sbjct: 64 TDPIKGEYRLELESPGSKRPLRRTRHFERMVGLKARVR-----GEGHSFTAPILKVEGDL 118 Query: 143 FF 144 Sbjct: 119 VT 120 >gi|113954072|ref|YP_731567.1| hypothetical protein sync_2370 [Synechococcus sp. CC9311] gi|123327605|sp|Q0I7K5|RIMP_SYNS3 RecName: Full=Ribosome maturation factor rimP gi|113881423|gb|ABI46381.1| DUF150 [Synechococcus sp. CC9311] Length = 157 Score = 96.7 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 64/154 (41%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGN-MTLRDCEELSQAISP 78 L D+ + + F + +L + + +QI + R G+ +TL DC S + Sbjct: 7 LLPDLKDLASATAVDHGFELADLQVLAHMQPMTVQIQIRRSSGDDVTLDDCAAFSAPMGE 66 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 L+ ++ Y LE+SSPGI + DF + + V G +QK G ++ Sbjct: 67 ALENSAVLNEAYVLEISSPGIGDHLQSDRDFQTFRRYPVDVIHRDPDGAEQKHSGTLLER 126 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +E + R ++ I DS+LS L Sbjct: 127 TENHLKISIHGRIKQ--------IPRDSILSVEL 152 >gi|309811524|ref|ZP_07705306.1| conserved hypothetical protein [Dermacoccus sp. Ellin185] gi|308434575|gb|EFP58425.1| conserved hypothetical protein [Dermacoccus sp. Ellin185] Length = 183 Score = 96.7 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 74/168 (44%), Gaps = 19/168 (11%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDD----------GNMTLRDCE 70 I I P +E + ++++ K L+++ V+RD +TL + Sbjct: 5 EQTIIDTILPKLEPLGLLVEDVTVVPAGKRRLVRVLVDRDVALETAVEESIEPVTLDEVT 64 Query: 71 ELSQAISPILDVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ 129 + ++ I L+ +++ E Y LEVSSPG DRP+ F R G +V + D+ Sbjct: 65 DATRVIDAELEASDVMGEQPYVLEVSSPGTDRPLTLPRHFARNVGRLVTVTL----DDES 120 Query: 130 KLIGKIMGTSETGFFLEKEKRGEKDMNELQIA---ISFDSLLSARLIV 174 K+ G+I + E+ G+K + +++ S+ A++ V Sbjct: 121 KVAGRITRADAQTVEVTPEQGGKKAGAAVDAEPARLNYTSITGAKVQV 168 >gi|642363|emb|CAA88035.1| 15 kD protein [Thermus thermophilus] Length = 156 Score = 96.3 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 9/137 (6%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAI 76 G + D+ +++ + + +++ + LL +D+ +T+ D EE S+ I Sbjct: 11 GGGEVTVDLWQLVEEAVSPLGLDVLEVHF--ARGELLVRLERKDERPITVADLEEASRHI 68 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 LD E+ I G YRL V SPG R + + F R+ G + + G+I+ Sbjct: 69 EAALDREDPIPGSYRLLVESPGPKR-LFTRRHFERFQG------LKAKVPGPEGFTGRIL 121 Query: 137 GTSETGFFLEKEKRGEK 153 + + Sbjct: 122 RVEGEEVVFQVGDEERR 138 >gi|87301302|ref|ZP_01084143.1| hypothetical protein WH5701_15491 [Synechococcus sp. WH 5701] gi|87284270|gb|EAQ76223.1| hypothetical protein WH5701_15491 [Synechococcus sp. WH 5701] Length = 156 Score = 96.3 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDG-NMTLRDCEELSQAISP 78 L + ++ P+ E + + + L L I + DG ++ L +C S + Sbjct: 5 LIPHLERLVTPLAEASGLALQGVEIQAHRLPLTLVIQIRHADGRDINLDECAAFSGVLGE 64 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +++ ++ Y LEVSSPGI ++ DF + G VA G + G ++ Sbjct: 65 VVEASELMTQAYVLEVSSPGIGEELLDDRDFHSFRGFPVAVRFRDGKGLETTREGLLLER 124 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 E L R + I ++S RL+ Sbjct: 125 DEEHLQLNLHGRISR--------IPRPDVISVRLV 151 >gi|240172758|ref|ZP_04751417.1| hypothetical protein MkanA1_25812 [Mycobacterium kansasii ATCC 12478] Length = 177 Score = 96.3 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 55/149 (36%), Gaps = 10/149 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + ++ + + + + + + D + L LS++ S +LD Sbjct: 9 TQVIELLGGAFACAGYEIEDVVIDTRAHPPRITVVADGDT-ALDLDTIAALSRSASALLD 67 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + I Y LEVSSPG++RP+ + F R G + + D +L G++ + Sbjct: 68 GLDAIRDKYVLEVSSPGVERPLTSEKHFRRARGRKIELTL----ADGSRLTGRVGELTGD 123 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSA 170 L + N I +L A Sbjct: 124 TLALVI----RQGRNWAVRQIPLAQVLKA 148 >gi|259016314|sp|Q3AZB4|RIMP_SYNS9 RecName: Full=Ribosome maturation factor rimP Length = 155 Score = 95.9 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 58/154 (37%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDG-NMTLRDCEELSQAISP 78 L ++ + Q V F I LL N + LQ+ + G ++ L DC S + Sbjct: 5 LLPELEQLTQRVAGLQGFELCGIQLLTHMNPITLQVQIRHTSGSDVNLDDCAGFSGVLGE 64 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 L+ + Y LE+SSPGI + DF + G V + +L G + Sbjct: 65 ALEESQQLVEAYVLEISSPGIGEQLSCDRDFQTFRGFPVDVTHRDQGNVEHRLEGLLHER 124 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + R + +I D ++ RL Sbjct: 125 NTDSLQINIRGRIK--------SIPRDQVIEVRL 150 >gi|228473622|ref|ZP_04058374.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC 33624] gi|228274994|gb|EEK13804.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC 33624] Length = 154 Score = 95.9 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 16/160 (10%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 M L + +I +EE I K+ L+++ V+ D G + + DC LS+AI Sbjct: 1 MNLKEKVKELIDKHLEENP-SLFLIEYSIGKDNLIKVIVDGDHG-VNIDDCVALSRAIEH 58 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LD E E + LEVSS GI P+ ++ + + G V + ++ IG I Sbjct: 59 NLDRE---EEDFSLEVSSSGIFAPLTQERQYTKNIGREVEVKTATATH-----IGVIQEV 110 Query: 139 SETGFFLEKEKRGEKDMNELQIA------ISFDSLLSARL 172 S+ L+ R K + +I + + + A L Sbjct: 111 SDGKVTLQVTSRQPKPQGKGKITVTEQFSLPIEEIKEATL 150 >gi|167751251|ref|ZP_02423378.1| hypothetical protein EUBSIR_02237 [Eubacterium siraeum DSM 15702] gi|167655758|gb|EDR99887.1| hypothetical protein EUBSIR_02237 [Eubacterium siraeum DSM 15702] Length = 163 Score = 95.5 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 60/143 (41%), Gaps = 3/143 (2%) Query: 26 SSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + P+IE + + +E L++ ++ DG + +CEE+++ ++ +D + Sbjct: 20 EQKVLPIIERYGYELWDVIFEKEGAMWYLKVLFDKADGGIDDVECEEITEPLNKAVDTLS 79 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET--G 142 I+ EV SPG+DR + + F++ G + + +G G + E Sbjct: 80 CIDLVDVFEVGSPGLDRQLRKPFHFVKMKGEKIKVTVRDENGKTAYYSGVLGDYDENSGE 139 Query: 143 FFLEKEKRGEKDMNELQIAISFD 165 F ++ + K I+ D Sbjct: 140 FTVQTDDGEMKFNAAKCRRIALD 162 >gi|239928613|ref|ZP_04685566.1| hypothetical protein SghaA1_10340 [Streptomyces ghanaensis ATCC 14672] gi|291436938|ref|ZP_06576328.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291339833|gb|EFE66789.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 173 Score = 95.5 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 70/154 (45%), Gaps = 7/154 (4%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + + +++P++ F +I++ + V D L ++S+A+S LD Sbjct: 6 SERLRELLEPLVSSQGFDLEEIAVDSVGRRRVLRVVVDSDTGADLDRIADVSRALSAKLD 65 Query: 82 VENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + + +G Y LEV +PG +R + ++R G +V ++ + +L+ +I+ + Sbjct: 66 ETDAMGQGEYTLEVGTPGAERLLTEHRHYVRATGRLVRFQL----AEGGELVARILEVGD 121 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G LE G K ++FD + AR+ V Sbjct: 122 DGLDLEV--PGVKGRKATARRLAFDDITRARVQV 153 >gi|254431118|ref|ZP_05044821.1| hypothetical protein CPCC7001_1009 [Cyanobium sp. PCC 7001] gi|197625571|gb|EDY38130.1| hypothetical protein CPCC7001_1009 [Cyanobium sp. PCC 7001] Length = 158 Score = 95.5 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 70/145 (48%), Gaps = 3/145 (2%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDG-NMTLRDCEELSQAISP 78 L ++ ++ V E+ F Q++LL + + LQ+ V+R DG +++L +C LS + Sbjct: 5 LIPELETLAGKVCAELGFELRQVNLLTHRIPMTLQVLVQRGDGRDISLDECAALSAPLGE 64 Query: 79 ILDVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 + D ++ E Y LE+SSPG+ + + DF + G VA +G + + G ++ Sbjct: 65 VFDAAGVLGEEAYVLEISSPGVSDELQDERDFRSFRGFPVAVRFTDRNGAEARCEGLLLE 124 Query: 138 TSETGFFLEKEKRGEKDMNELQIAI 162 + + + R ++ I + Sbjct: 125 RTASELQINMRGRTKRIPRASVIQV 149 >gi|269219600|ref|ZP_06163454.1| conserved hypothetical protein [Actinomyces sp. oral taxon 848 str. F0332] gi|269210842|gb|EEZ77182.1| conserved hypothetical protein [Actinomyces sp. oral taxon 848 str. F0332] Length = 160 Score = 95.1 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 70/155 (45%), Gaps = 15/155 (9%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDG--NMTLRDCEELSQAIS 77 + IS+ + V+ + + KNL++++ V+ G + E+S+ IS Sbjct: 1 MTESISTALDEVVASRGLYLEAVKIGRGGKNLVVKVVVDLPSGPGGVDSDRLTEVSRDIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD ++++G Y LEVS+PG +R + F R G +V V D + ++G+++ Sbjct: 61 QRLDDVDLVQGAYTLEVSTPGAERSLREPRHFSRAQGRLVELRTV----DGKSVVGRLVS 116 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 S ++ E + ++ ++S R+ Sbjct: 117 LSGDALNVQVEG--------SRRSVPMAEVVSGRV 143 >gi|213026073|ref|ZP_03340520.1| hypothetical protein Salmonelentericaenterica_28018 [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 59 Score = 95.1 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 37/59 (62%) Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 +S +S +LDVE+ I Y LEVSSPG+DRPM + R+ G VA + ++ +++K Sbjct: 1 MSHQVSAVLDVEDPISVAYNLEVSSPGLDRPMFTADHYARFQGEEVALVLRMAVQNRRK 59 >gi|329936657|ref|ZP_08286364.1| hypothetical protein SGM_1856 [Streptomyces griseoaurantiacus M045] gi|329303887|gb|EGG47770.1| hypothetical protein SGM_1856 [Streptomyces griseoaurantiacus M045] Length = 179 Score = 95.1 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 66/154 (42%), Gaps = 7/154 (4%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + + +++P++ +I + + V D L ++S+A+S LD Sbjct: 6 SERLRELLEPLVTSQGLDLEEIDVASVGRRRVLRVVVDSDTGADLDRVADVSRALSAKLD 65 Query: 82 VENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + + G Y LEV +PG +R + ++R +V ++ + +L+ +I+G E Sbjct: 66 ETDAMGAGEYTLEVGTPGAERALTEHRHYVRALDRLVRFQLR----EGGELVARILGVDE 121 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G LE G K ++F + AR+ V Sbjct: 122 EGLDLEV--PGVKGRRPTTRRLAFPDVDKARVQV 153 >gi|301167103|emb|CBW26682.1| conserved hypothetical protein [Bacteriovorax marinus SJ] Length = 172 Score = 94.4 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 68/167 (40%), Gaps = 22/167 (13%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMT-LRDCEELSQAIS 77 G+ + + EE+ + L+ + L++F+ + L +C +L +A++ Sbjct: 8 TGVEKKFYELCSRLCEELGLEIYDLDYLKGSH-TLRVFIMNPETKTAVLEECSKLDRALT 66 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVL------------SS 125 P ++ E + LEVSSPG+ R + + F + I S Sbjct: 67 PYIEEEEWMPSELTLEVSSPGMFRHLSKIEHFEMSLEEDIQFTIRARLTQDLFPGIPKSL 126 Query: 126 GDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++K++GK++ +E + ++ ++ + ++ + A L Sbjct: 127 QGERKILGKLLKVTEETITV--------LSHDYELTLKYEDIKKANL 165 >gi|183981904|ref|YP_001850195.1| hypothetical protein MMAR_1891 [Mycobacterium marinum M] gi|226696166|sp|B2HKR9|RIMP_MYCMM RecName: Full=Ribosome maturation factor rimP gi|183175230|gb|ACC40340.1| conserved hypothetical protein [Mycobacterium marinum M] Length = 177 Score = 94.4 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 55/149 (36%), Gaps = 10/149 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + ++ + + + + + + + D + L LS++ S +LD Sbjct: 9 TQVIELLGGEFARAGYEIEDVVIDHRARPPRITVVADGDT-TLDLDTIAVLSRSASSLLD 67 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + I Y LEVSSPGIDRP+ + F R G V + D +L G+I Sbjct: 68 SLDNIGDSYVLEVSSPGIDRPLTSEKHFRRARGRKVELTL----ADGSQLTGRIGALQSG 123 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSA 170 L E + E I + A Sbjct: 124 SLDLVVRAGREWKVRE----IPLAEVEKA 148 >gi|325676663|ref|ZP_08156338.1| hypothetical protein HMPREF0724_14121 [Rhodococcus equi ATCC 33707] gi|325552518|gb|EGD22205.1| hypothetical protein HMPREF0724_14121 [Rhodococcus equi ATCC 33707] Length = 189 Score = 94.4 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 73/172 (42%), Gaps = 14/172 (8%) Query: 23 GDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + ++ I + +++ L ++ +++ V+ D G + L + LS IS + D Sbjct: 7 ERVVELLADPIGREGYDLEDVTITLAGRHSSVRVMVDSDSG-LELDEVARLSHVISDVFD 65 Query: 82 VE-NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + E Y LEV+SPGIDRP+ + R G V E+ + + G++ ++ Sbjct: 66 AASDFGESPYTLEVTSPGIDRPLTEGRHWRRAQGRKVLVELAE-----ESVTGRVGRLTD 120 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 G L + +G + +++A + A +V E R G+ Sbjct: 121 GGVDLVVKAKGGPVVRRVELA----DVKKA--VVQVEFSRPDAKELELAGGI 166 >gi|54026040|ref|YP_120282.1| hypothetical protein nfa40690 [Nocardia farcinica IFM 10152] gi|81373776|sp|Q5YSC3|RIMP_NOCFA RecName: Full=Ribosome maturation factor rimP gi|54017548|dbj|BAD58918.1| hypothetical protein [Nocardia farcinica IFM 10152] Length = 217 Score = 94.4 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 16/163 (9%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-----NLLLQIFVERDDGNMTLRDCEELS 73 M +S ++ ++E F + + + + V+ DG L ELS Sbjct: 3 MPTEERVSQLVAGLVERRGFDLEGVEITRAGSRADAQPRVTVVVDS-DGAADLDAVAELS 61 Query: 74 QAISPILDVENIIEGH-YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS-----GD 127 +S +LD +I Y LEV++PG+DRP+ + R G V + + G Sbjct: 62 SEMSVVLDDTDIFGDSPYLLEVTTPGVDRPLTAPRHWRRAQGRKVRITLRPGAEPPDPGG 121 Query: 128 KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 ++ L + N ++ + + A Sbjct: 122 SAGFEARVGVLDGEQIALVLGGK----RNPHRVRVPLADIERA 160 >gi|254482605|ref|ZP_05095844.1| conserved hypothetical protein [marine gamma proteobacterium HTCC2148] gi|214037296|gb|EEB77964.1| conserved hypothetical protein [marine gamma proteobacterium HTCC2148] Length = 90 Score = 94.0 bits (233), Expect = 9e-18, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 8/94 (8%) Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LDVE+ I G Y LEVSSPG+DR + + + + + G ++ + + ++K G + G Sbjct: 1 MLDVEDPITGEYTLEVSSPGMDRLLFQLTQYPAYVGEIIELRLRSAFEGRRKFKGVLKGI 60 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ + + + ++ AR+ Sbjct: 61 EGEDVVIQVDNH--------EYLLPHSAIEKARV 86 >gi|298345266|ref|YP_003717953.1| hypothetical protein HMPREF0573_10140 [Mobiluncus curtisii ATCC 43063] gi|315655686|ref|ZP_07908584.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333] gi|298235327|gb|ADI66459.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 43063] gi|315489750|gb|EFU79377.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333] Length = 197 Score = 94.0 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 67/171 (39%), Gaps = 17/171 (9%) Query: 7 LHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMT 65 + ++ +P D + I V+ PV+E +I++ K+ ++ I ++ DG Sbjct: 25 ITTEAQPHTSTDPSVEA-IIQVVNPVVEAAGLYLEKIAVTGPKHQRVVAISLDLPDGVDN 83 Query: 66 L--RDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVL 123 L E+ S+AI LD + + G Y LE+S+ G + + R G V Sbjct: 84 LGSAQLEDASRAIGAALDAADPLSGAYTLEISTLGAEHELTNLRLARRALGKDVEVRT-- 141 Query: 124 SSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 Q G + +ETG + + F+ + S R ++ Sbjct: 142 ---GGQVRAGILTEVTETGLSVNDDGDVTVY--------PFEDIESVRTVI 181 >gi|226306116|ref|YP_002766076.1| hypothetical protein RER_26290 [Rhodococcus erythropolis PR4] gi|259586185|sp|C0ZYA2|RIMP_RHOE4 RecName: Full=Ribosome maturation factor rimP gi|226185233|dbj|BAH33337.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length = 206 Score = 93.6 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 66/150 (44%), Gaps = 12/150 (8%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +I ++ + + + K+ ++I V+ D G + L E+S+ +S + D Sbjct: 7 ERVIELISELVHAQGYDVEDVVVTSAGKHSAVRIMVDSDAG-IELDAAAEISRLVSELFD 65 Query: 82 V-ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 E I E Y LEV+SPGIDRP+ + + R G ++ + ++G+I ++ Sbjct: 66 SLEEIGETPYTLEVTSPGIDRPLTLERHWRRARGRKARIDLA-----GETVVGRIGTLND 120 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 + RG + E I+ + A Sbjct: 121 DSVAVVIGGRGGLTVRE----IALGDVQKA 146 >gi|229491457|ref|ZP_04385281.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|229321742|gb|EEN87539.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length = 206 Score = 93.6 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 65/150 (43%), Gaps = 12/150 (8%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +I ++ + + + K+ ++I V+ D G + L E+S+ +S + D Sbjct: 7 ERVIELISELVHAQGYDVEDVVVTSAGKHSAVRIMVDSDAG-IELDAAAEISRLVSELFD 65 Query: 82 V-ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 E I E Y LEV+SPGIDRP+ + R G ++ + ++G+I ++ Sbjct: 66 TLEEIGETPYTLEVTSPGIDRPLTLDRHWRRARGRKARIDLA-----GETVVGRIGTLND 120 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 + RG + E I+ + A Sbjct: 121 DSVAVVIGGRGGLTVRE----IALGDVQKA 146 >gi|297626629|ref|YP_003688392.1| hypothetical protein PFREUD_14670 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922394|emb|CBL56966.1| Hypothetical protein PFREUD_14670 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 157 Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 63/154 (40%), Gaps = 17/154 (11%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERD--DG-NMTLRDCEELSQAIS 77 + ++ P++ E ++ ++ K+ +L+I ++ D +G L + ++AIS Sbjct: 3 ESTLIDLLDPIVAEHGLEIDELKIVRAGKHSVLRISLDGDGSEGHGPDLDQIADATRAIS 62 Query: 78 PILDV-ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 LD E Y LEVSS G+ P+ R + + R +V +K G+I Sbjct: 63 HALDEAEAPSNSPYTLEVSSRGVSAPLTRPAHWRRNATRLVEVT---PLEG-EKYTGRIT 118 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 E G LE + + + F + A Sbjct: 119 SADEDGAELEIDGQPR--------HVDFGQVRRA 144 >gi|295395323|ref|ZP_06805526.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC 49030] gi|294971826|gb|EFG47698.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC 49030] Length = 153 Score = 93.2 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 63/158 (39%), Gaps = 17/158 (10%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERD---DGNMTLRDCEELSQAIS 77 A ++ +I+ + + + + + ++ D ++L + ++ +S Sbjct: 5 AQQVTDLIRTPLSQAGLIVEDVKAHAAGQYRKVTVVIDLDTDTSDPVSLDTIAQATKIVS 64 Query: 78 PILD-VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 ++D VE + Y LEV+SPG R + K FLR G + G+++ Sbjct: 65 ELIDDVELFNDKPYDLEVTSPGATRELTAKRHFLRNRGRNLDVRTNGP-----TYTGELV 119 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ G L K+ + I F + A++++ Sbjct: 120 DVTDKGITLMDTKK-------VDYVIPFSDITKAKVVL 150 >gi|110639789|ref|YP_679999.1| hypothetical protein CHU_3420 [Cytophaga hutchinsonii ATCC 33406] gi|122966504|sp|Q11PK7|RIMP_CYTH3 RecName: Full=Ribosome maturation factor rimP gi|110282470|gb|ABG60656.1| conserved hypothetical protein [Cytophaga hutchinsonii ATCC 33406] Length = 167 Score = 92.8 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 77/170 (45%), Gaps = 21/170 (12%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLE--EKNLLLQIFVERDDGNMTLRDCEELSQA 75 ++ + +S ++Q E V I+ + +L + +++D G + + +C E S+A Sbjct: 5 ELEIKTYVSDLLQERAE---LFLVDIAFSGTHSRRKIL-VILDKDSG-ILIDECGEFSRA 59 Query: 76 ISPILDVENIIEG-HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 + +++ N+ Y LEVSSPG+DRP++ + R G+ + D + Sbjct: 60 LGNLIEENNLFGDNAYVLEVSSPGMDRPLLVSRQYKRRIGN----TLSFLLNDGTQFDAV 115 Query: 135 IMGTSETGFFL----EKEKRGEKDMNELQIAIS-----FDSLLSARLIVT 175 + SE G + +K K+ K + +AI F+ + LIV+ Sbjct: 116 LESVSEEGVVVMPAPQKVKKSNKKEAVVDVAIEPRKLRFEEIKKCNLIVS 165 >gi|269956008|ref|YP_003325797.1| hypothetical protein Xcel_1208 [Xylanimonas cellulosilytica DSM 15894] gi|269304689|gb|ACZ30239.1| protein of unknown function DUF150 [Xylanimonas cellulosilytica DSM 15894] Length = 192 Score = 92.8 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 4/138 (2%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDD---GNMTLRDCEEL 72 G A + V+ P ++ +S ++++ V+ + G++ + + Sbjct: 12 GGSATAEAVRRVVAPAVDAEGLFLESVSATRAGARSVVRVTVDLPEDAVGSLGSDALDAV 71 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+AIS LD ++++ G Y LEVS+PG RP+ F R +V +V + +L Sbjct: 72 SRAISAALDADDVVRGVYVLEVSTPGTSRPLTELRHFKRARTRLVTLSLVDGGEAEGRLQ 131 Query: 133 GKIMGTSETGFFLEKEKR 150 + GT LE R Sbjct: 132 DVVAGTDGDELVLEDGGR 149 >gi|193214184|ref|YP_001995383.1| hypothetical protein Ctha_0465 [Chloroherpeton thalassium ATCC 35110] gi|259585751|sp|B3QUN0|RIMP_CHLT3 RecName: Full=Ribosome maturation factor rimP gi|193087661|gb|ACF12936.1| protein of unknown function DUF150 [Chloroherpeton thalassium ATCC 35110] Length = 182 Score = 92.8 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 66/149 (44%), Gaps = 14/149 (9%) Query: 35 EMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVEN----IIEGH 89 E V I + K + ++++F + D G +++ +C+ LS+ IS LD ++ H Sbjct: 29 EHEVFLVDIEVHSNKTIDIIEVFADTDSG-ISVENCKFLSKHISAELDASEEMQALLPRH 87 Query: 90 YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET---GFFLE 146 ++L VSSPG+ RP+ + + G ++ + G+ + + G+ + E L+ Sbjct: 88 FKLVVSSPGLSRPLTMNRQYKKNIGRLMQVTYQNADGEIKTIDGRFISLEEEAEASITLD 147 Query: 147 KEKRGE-----KDMNELQIAISFDSLLSA 170 K + K + I F + A Sbjct: 148 ITKIQKSKPNAKPKPPELVTIPFSQIQKA 176 >gi|118617679|ref|YP_906011.1| hypothetical protein MUL_2119 [Mycobacterium ulcerans Agy99] gi|166987594|sp|A0PQC1|RIMP_MYCUA RecName: Full=Ribosome maturation factor rimP gi|118569789|gb|ABL04540.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] Length = 177 Score = 92.4 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 55/149 (36%), Gaps = 10/149 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + ++ + + + + + + + D + L LS++ S +LD Sbjct: 9 TQVIELLGGEFARAGYEIEDVVIDHRARPPRITVVADGDT-TLDLDTIAVLSRSASSLLD 67 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + I Y LEVSSPGIDRP+ + F R G V + D +L G+I Sbjct: 68 SLDNIGDSYVLEVSSPGIDRPLTSEKHFRRARGPKVELTL----ADGSQLTGRIGALQSG 123 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSA 170 L E + E I + A Sbjct: 124 SLDLVVRAGREWKVRE----IPLAEVEKA 148 >gi|15806797|ref|NP_295519.1| hypothetical protein DR_1796 [Deinococcus radiodurans R1] gi|34223164|sp|Q9RTG8|RIMP_DEIRA RecName: Full=Ribosome maturation factor rimP gi|6459574|gb|AAF11352.1|AE002021_1 conserved hypothetical protein [Deinococcus radiodurans R1] Length = 158 Score = 92.4 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 3/128 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVER-DDGNMTLRDCEELSQAISPILDV 82 + + + + F ++++ E ++L++ + ++R D+ +T+ D S+A D Sbjct: 11 LFDLADGAVRPLGFEVLEVTQQREGRDLIVLVRIDRLDEQPVTMDDLTAASRAAEAEFDR 70 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 + IE YRLE SPG RP++R F R G L + I Sbjct: 71 VDPIEEEYRLEFESPGGKRPLLRARHFERMIGLKAKVR-SLPGRGEHNFTAPIKAVEGDT 129 Query: 143 FFLEKEKR 150 E Sbjct: 130 VTFEHGGE 137 >gi|269795642|ref|YP_003315097.1| hypothetical protein Sked_23480 [Sanguibacter keddieii DSM 10542] gi|269097827|gb|ACZ22263.1| uncharacterized conserved protein [Sanguibacter keddieii DSM 10542] Length = 181 Score = 92.0 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 68/166 (40%), Gaps = 17/166 (10%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDD---GNMTLRDCEELSQAI 76 +A ++ ++P +E + + ++++ ++ + G + L E+S+ I Sbjct: 6 IAEQVADAVRPGVESAGLVLEDVQVAPAGARTVVRVVLDLTEDQTGALGLDQVAEVSRVI 65 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 S LD + G + LEV+SPG RP+ F R +VA +V + ++ Sbjct: 66 SDTLDTLPALPGKFTLEVTSPGTSRPLTELRHFKRARTRLVAVTLVEGAP----FTERLT 121 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS 182 + E + + F ++ S ++ V EL RA+ Sbjct: 122 SVEDEVLVFE-------GADGAPHEVPFAAVSSGQVEV--ELKRAA 158 >gi|88807315|ref|ZP_01122827.1| hypothetical protein WH7805_12228 [Synechococcus sp. WH 7805] gi|88788529|gb|EAR19684.1| hypothetical protein WH7805_12228 [Synechococcus sp. WH 7805] Length = 155 Score = 92.0 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 63/147 (42%), Gaps = 4/147 (2%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDG-NMTLRDCEELSQAISP 78 L DI+SV F I +L + + +Q+ + R DG +++L DC S+ + Sbjct: 5 LLPDITSVAAATAAAQGFELAGIQILTHLQPMTVQVQIRRSDGSDVSLDDCAGFSRPMGE 64 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ-KLIGKIMG 137 L+ + ++ Y LE+SSPGI + DF + + V + + ++ + G ++ Sbjct: 65 ALESQALLTEAYVLEISSPGIGDQLQSDRDFQTFRSYPVEV-LYRDNEGRELRQQGSLLE 123 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISF 164 + R ++ I++ Sbjct: 124 RDNDHVHVNVRGRIKRISRPSVISVQL 150 >gi|318042327|ref|ZP_07974283.1| hypothetical protein SCB01_11489 [Synechococcus sp. CB0101] Length = 157 Score = 91.7 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 62/155 (40%), Gaps = 11/155 (7%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGN-MTLRDCEELSQAISP 78 L D+ + V + F+ + LL + + L + + DG ++L +C S + Sbjct: 5 LIPDLERLASQVAADAGFQVCGVQLLTHRIPMTLLVQLRLADGGDVSLDNCASFSGVLGE 64 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ-KLIGKIMG 137 L+ +IE Y LE+SSPGI + DF + G V S + + G ++ Sbjct: 65 ALEAAALIEDAYVLEISSPGIAETLNDDRDFRSFRGFPVCVRYRDSKTGVEAEREGLLLE 124 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ + R + + +++ RL Sbjct: 125 RTDDSVQINVRGR--------TVRLPRADVIAVRL 151 >gi|257457667|ref|ZP_05622834.1| conserved hypothetical protein [Treponema vincentii ATCC 35580] gi|257445053|gb|EEV20129.1| conserved hypothetical protein [Treponema vincentii ATCC 35580] Length = 186 Score = 91.7 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 70/148 (47%), Gaps = 22/148 (14%) Query: 30 QPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAI----SPILDVEN 84 + ++ + ++ V + ++ +K+ L++ + +G + + DC ++ +A+ +L+ ++ Sbjct: 53 EQLVTGLGYKLVDLQIVHQKSAWLVKAVIYSKNG-VGIDDCSKVHRALLSRAEVLLNSQD 111 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I ++EVSSPG++R + ++F + G + + +S D L G+++ TG Sbjct: 112 I-----QMEVSSPGLNRVIKNAAEFQAFIGENIKV-LEVSCPD--WLEGELLAADSTGIR 163 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARL 172 L I + + A+L Sbjct: 164 LNISGEQRD--------IRYADIKKAKL 183 >gi|78184172|ref|YP_376607.1| hypothetical protein Syncc9902_0595 [Synechococcus sp. CC9902] gi|78168466|gb|ABB25563.1| conserved hypothetical protein [Synechococcus sp. CC9902] Length = 166 Score = 91.7 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 10/138 (7%) Query: 37 SFRSVQISLLEEKNLL-LQIFVERDDG-NMTLRDCEELSQAISPILDVENIIEGHYRLEV 94 F I LL N + LQ+ + G ++ L DC S + L+ + Y LE+ Sbjct: 32 GFELCGIQLLTHMNPITLQVQIRHTSGSDVNLDDCAGFSGVLGEALEESQQLVEAYVLEI 91 Query: 95 SSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKD 154 SSPGI + DF + G V + +L G + + + R + Sbjct: 92 SSPGIGEQLSCDRDFQTFRGFPVDVTHRDQGNVEHRLEGLLHERNTDSLQINIRGRIK-- 149 Query: 155 MNELQIAISFDSLLSARL 172 +I D ++ RL Sbjct: 150 ------SIPRDQVIEVRL 161 >gi|262202084|ref|YP_003273292.1| hypothetical protein Gbro_2150 [Gordonia bronchialis DSM 43247] gi|262085431|gb|ACY21399.1| protein of unknown function DUF150 [Gordonia bronchialis DSM 43247] Length = 179 Score = 91.7 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 11/151 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPIL 80 + +++ +++ V+ + F + + + V+R DG L ELS I +L Sbjct: 5 SPELNDLVEKVVTDRGFDLEDVVVRRRDGRDEFSVVVDR-DGGSDLDVLAELSTEIGEVL 63 Query: 81 D-VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 D V + + Y LEV+SPGIDRP+ + R G V E ++G++ S Sbjct: 64 DAVPALADAAYTLEVTSPGIDRPLTAPRHWRRALGRRVRIE----RDGSDAVVGRVGQVS 119 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 + +G + + FDS+ A Sbjct: 120 GDDVAIVVNHKGRLAVE----TVGFDSVTRA 146 >gi|226355943|ref|YP_002785683.1| hypothetical protein Deide_10390 [Deinococcus deserti VCD115] gi|259585746|sp|C1CUR2|RIMP_DEIDV RecName: Full=Ribosome maturation factor rimP gi|226317933|gb|ACO45929.1| conserved hypothetical protein [Deinococcus deserti VCD115] Length = 154 Score = 91.3 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 51/128 (39%), Gaps = 7/128 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVER-DDGNMTLRDCEELSQAISPILDV 82 + + +E + F +++ + + ++ + V+R D+ +T+ D + S+A D Sbjct: 11 LQQIAHAAVEPLGFEVLEVQVQSQGGEKIVLVRVDRLDEQPVTMEDLTKASRAAEAEFDR 70 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 + + G YRLE SPG RP+ R F R G G+ I S Sbjct: 71 LDPVAGEYRLEFESPGSKRPLTRARHFERMLGLKARVR-----GEGHAFTAPIKAVSGDQ 125 Query: 143 FFLEKEKR 150 + + Sbjct: 126 VTFDVSGQ 133 >gi|325286755|ref|YP_004262545.1| Ribosome maturation factor rimP [Cellulophaga lytica DSM 7489] gi|324322209|gb|ADY29674.1| Ribosome maturation factor rimP [Cellulophaga lytica DSM 7489] Length = 154 Score = 91.3 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 74/158 (46%), Gaps = 15/158 (9%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 ++S+++ ++E I + + I ++ D+G +TL+DC +S+AI LD Sbjct: 4 EQVTSLLEGALKETP-SLFLIDFTITPDFKINIVLDGDNG-VTLKDCVAVSRAIDHNLDR 61 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E E + +EV+S G P+V + + G + + + + + G++ +E Sbjct: 62 E---EQDFSVEVASAGASSPLVLPRQYAKNIGRKLEVKTI----EGRNFEGQLTAATEET 114 Query: 143 FFLEKEKRGEKDMNELQI------AISFDSLLSARLIV 174 LE + R +K + + ++ I F + A++++ Sbjct: 115 ITLEWKAREQKPVGKGKVTVQKKEEILFSDIKEAKVVL 152 >gi|260910868|ref|ZP_05917512.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] gi|260635019|gb|EEX53065.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] Length = 167 Score = 91.3 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 58/138 (42%), Gaps = 14/138 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL--DV 82 + +++ + + + V + + ++++ ++ DG + + DC ELS+ I L D Sbjct: 20 VKQLVEQWLADKEYFLVDVETSPDSRIVVE--IDHADG-VWIEDCVELSRFIEEHLNRDE 76 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ Y LEV S G+ +P ++ + G V D +K G + Sbjct: 77 ED-----YELEVGSAGLGQPFKVPQQYVNFIGKEVEV----LDKDGKKYKGTLKSVDGND 127 Query: 143 FFLEKEKRGEKDMNELQI 160 F + ++ + + + + Sbjct: 128 FVVTVNEKVKVEGKKRPV 145 >gi|159904154|ref|YP_001551498.1| hypothetical protein P9211_16131 [Prochlorococcus marinus str. MIT 9211] gi|159889330|gb|ABX09544.1| DUF150 [Prochlorococcus marinus str. MIT 9211] Length = 171 Score = 91.3 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 58/146 (39%), Gaps = 2/146 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVER-DDGNMTLRDCEELSQAISP 78 + + + + V++ + +Q+ +++ +++L DC + S+ IS Sbjct: 21 IVTSLKILASNTAADKGLEVVELKFNPHSKPITIQVQIQKKPKKDVSLDDCAQFSELISE 80 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +++ +I Y LE+SSPG+ + DF + G + + K G + Sbjct: 81 TIELSKLINEPYLLEISSPGLGDLLQTDKDFKTFKGFPIEVLFKNNENTKLTKSGLLHER 140 Query: 139 SETGFFLEKEKRGEKDMNELQIAISF 164 S+ + + R K E I + Sbjct: 141 SKEYLLINIKGRISKIPREDVITVQL 166 >gi|332883099|gb|EGK03383.1| hypothetical protein HMPREF9456_02020 [Dysgonomonas mossii DSM 22836] Length = 187 Score = 91.3 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 64/151 (42%), Gaps = 10/151 (6%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + M I + + +E + V + + +++++ + D+G +++ DC LS+ Sbjct: 29 LVKKMIEKELIRDITEKYLEGTTMFLVDVVVKPGNAIVVEV--DSDEG-VSIDDCIALSR 85 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 I LD E + LEV S GI P+ + ++ G+ V QKL G Sbjct: 86 NIESHLDRE---AEDFELEVGSAGITSPLKIPRQYKKYIGNEVEVLTKK----GQKLSGV 138 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFD 165 + + F + K + D + ++A+ D Sbjct: 139 LKSCDDNSFVITVTKMVKPDGGKKKVAVDED 169 >gi|295132450|ref|YP_003583126.1| hypothetical protein ZPR_0573 [Zunongwangia profunda SM-A87] gi|294980465|gb|ADF50930.1| conserved hypothetical protein [Zunongwangia profunda SM-A87] Length = 154 Score = 90.9 bits (225), Expect = 7e-17, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 79/164 (48%), Gaps = 18/164 (10%) Query: 19 MGLAGDISSVIQPVIEEMS-FRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M L ++ ++Q EE + + + + + +++ ++ D G +++ DC +S+ + Sbjct: 1 MKLKENVEKLLQQAFEENNSLFLIDLMITSDNQ--IRVIIDGDKG-VSVEDCMYVSRKVE 57 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD E E + LEV+S G+ P+ + + G + + + +K G ++ Sbjct: 58 HNLDRE---EEDFSLEVTSAGVSEPLQIPRQYKKNIGRKLQVKT-----ENEKFEGNLID 109 Query: 138 TSETGFFLEKEKRGEKDMNELQIA------ISFDSLLSARLIVT 175 +E+ L+ + R K + + ++ +++ +++ A++++T Sbjct: 110 ATESDIKLQWKAREPKPVGKGKVTVEKEAVLAYSAIVEAKVMIT 153 >gi|116071182|ref|ZP_01468451.1| hypothetical protein BL107_16090 [Synechococcus sp. BL107] gi|116066587|gb|EAU72344.1| hypothetical protein BL107_16090 [Synechococcus sp. BL107] Length = 166 Score = 90.9 bits (225), Expect = 7e-17, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 10/138 (7%) Query: 37 SFRSVQISLLEEKNLL-LQIFVERDDGN-MTLRDCEELSQAISPILDVENIIEGHYRLEV 94 F I LL N + LQ+ + +G+ + L DC S + L+ + Y LE+ Sbjct: 32 GFELCGIQLLTHLNPITLQVQIRHTNGSDVNLDDCAGFSGVLGEALEESQQLIEAYVLEI 91 Query: 95 SSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKD 154 SSPGI + DF + G V + L G + + + R + Sbjct: 92 SSPGIGEQLSCDRDFQTFRGFPVDVTHRDQGNVEHHLEGLLHERNTDSLQINIRGRIK-- 149 Query: 155 MNELQIAISFDSLLSARL 172 +I D ++ RL Sbjct: 150 ------SIPRDQVIEVRL 161 >gi|320537772|ref|ZP_08037694.1| hypothetical protein HMPREF9554_02448 [Treponema phagedenis F0421] gi|320145362|gb|EFW37056.1| hypothetical protein HMPREF9554_02448 [Treponema phagedenis F0421] Length = 149 Score = 90.9 bits (225), Expect = 8e-17, Method: Composition-based stats. Identities = 34/144 (23%), Positives = 68/144 (47%), Gaps = 14/144 (9%) Query: 30 QPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEG 88 + ++ + +R V +S +++K +Q V + G + + DC ++ +A+ P L+ + Sbjct: 16 ESLVNGLGYRLVNLSAVKQKAGWQIQAVVYSEKG-VGIDDCSKVHRALLPRLEAL-LNSQ 73 Query: 89 HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKE 148 L+VSSPGI+R + +F + G +A S ++ G + T+E +E + Sbjct: 74 DVSLQVSSPGINRNIKSTIEFAAFIGEAIAVWSAEISDWRE---GTLADTTEEAITIETK 130 Query: 149 KRGEKDMNELQIAISFDSLLSARL 172 E AIS+ + A+L Sbjct: 131 --------EGMAAISYADIKKAKL 146 >gi|332298599|ref|YP_004440521.1| Ribosome maturation factor rimP [Treponema brennaborense DSM 12168] gi|332181702|gb|AEE17390.1| Ribosome maturation factor rimP [Treponema brennaborense DSM 12168] Length = 169 Score = 90.9 bits (225), Expect = 9e-17, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 68/155 (43%), Gaps = 18/155 (11%) Query: 31 PVIEEMSFRSVQISLLEEKNLLLQIF--VERDDGN-----MTLRDCEELSQAISPILDVE 83 P++ + + V++ ++ + ++++ + G + + DC ++ +A+ P L+V Sbjct: 17 PLVAGLGYVLVELRVIPQHG-VIRVLAVISHPAGENSIALIGINDCAKVHRALLPRLEVV 75 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + +EV+SPG++R + ++F + GH+V + + GKI+ + Sbjct: 76 -LNSQDIYMEVTSPGMERVIKNAAEFALFTGHLVRVWDSEVTD---WIAGKIVVSDTESV 131 Query: 144 FLEKEKRGEKDMNELQI------AISFDSLLSARL 172 LE + E I I + + A+L Sbjct: 132 TLEMIRTELVKGAEPSIGAPESKRIPYGRIAKAKL 166 >gi|134102375|ref|YP_001108036.1| hypothetical protein SACE_5928 [Saccharopolyspora erythraea NRRL 2338] gi|291004240|ref|ZP_06562213.1| hypothetical protein SeryN2_06952 [Saccharopolyspora erythraea NRRL 2338] gi|167016718|sp|A4FM36|RIMP_SACEN RecName: Full=Ribosome maturation factor rimP gi|133914998|emb|CAM05111.1| protein of unknown function DUF150 [Saccharopolyspora erythraea NRRL 2338] Length = 185 Score = 90.5 bits (224), Expect = 9e-17, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 73/152 (48%), Gaps = 11/152 (7%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 +A + V+ + F ++ + + + L+++ V+ ++G + L + E+S+A+S + Sbjct: 9 VAARLEPVVAEAVSAAGFDLEELDVQQAGRRRLVKVVVDAEEG-VGLDEISEISRAVSKV 67 Query: 80 LDV-ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LD E+++ G Y LEV+SPG+DRP+ R + R +V + D L+ ++ Sbjct: 68 LDAHEHVLAGSYTLEVTSPGVDRPLTRPRHWRRARYRLVRVRL----ADGSDLVVRVGEA 123 Query: 139 SETGFFLEKEKRGE----KDMNELQIAISFDS 166 + G + + +D+ + + F Sbjct: 124 DDEGVVVLADGEIRTLAYRDVERAVVEVEFQQ 155 >gi|326382938|ref|ZP_08204628.1| ribosome maturation protein RimP [Gordonia neofelifaecis NRRL B-59395] gi|326198528|gb|EGD55712.1| ribosome maturation protein RimP [Gordonia neofelifaecis NRRL B-59395] Length = 181 Score = 90.5 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 69/153 (45%), Gaps = 8/153 (5%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQAISP 78 L GDI V+ + E + ++++L ++I V+R DG +L +LS+A+ Sbjct: 5 ALTGDIGDVLTAPLAEHGYDLEEVAILTPPGRREIRIVVDR-DGGASLDALADLSRALES 63 Query: 79 ILDVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LD +++ E Y LE+++PGI RP+ + R G V E G + + ++ Sbjct: 64 VLDDSDLLGESPYDLELTTPGIGRPLTLPRHWRRSQGRKVTAE-YTVDGAARTVEARVGE 122 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 + + L + + ++ ++ A Sbjct: 123 SDDDQVTLVLVDKSRIK----TVDVALADIVRA 151 >gi|289643648|ref|ZP_06475761.1| protein of unknown function DUF150 [Frankia symbiont of Datisca glomerata] gi|289506539|gb|EFD27525.1| protein of unknown function DUF150 [Frankia symbiont of Datisca glomerata] Length = 221 Score = 90.5 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 72/167 (43%), Gaps = 18/167 (10%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 ++ ++ P + F +++ + + V DG + L E S+ S +LD Sbjct: 34 AELVRLLTPQLAARGFDLEDVTVSRAGSRSVVRVVVDRDGGVDLDAVAEASRVASAVLDA 93 Query: 83 EN--------IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 + G Y LEVSSPG+DRP+V + R G +V+ D ++L+G+ Sbjct: 94 AETDPAAGDPPLAGPYVLEVSSPGVDRPLVAPRHWHRARGRLVSVRTR----DGRELLGR 149 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV----TDE 177 + T E L E G + + ISF ++ A + V TDE Sbjct: 150 VRATDEQTAELVLE--GGRTAVGEVLRISFADVVRAAVQVEFRATDE 194 >gi|312139327|ref|YP_004006663.1| hypothetical protein REQ_19140 [Rhodococcus equi 103S] gi|311888666|emb|CBH47978.1| conserved hypothetical protein [Rhodococcus equi 103S] Length = 181 Score = 90.5 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 14/168 (8%) Query: 27 SVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE-N 84 ++ I + +++ L ++ +++ V+ D G + L + LS IS + D + Sbjct: 3 ELLADPIGREGYGLEDVTITLAGRHSSVRVMVDSDSG-LELDEVARLSHVISDVFDAASD 61 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 E Y LEV+SPGIDRP+ + R G V E+ + + G++ ++ G Sbjct: 62 FGESPYTLEVTSPGIDRPLTEGRHWRRAQGRKVLVELAE-----ESVTGRVGRLTDGGVD 116 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 L + +G + +++A + A +V E R G+ Sbjct: 117 LVVKAKGGPVVRRVELA----DVKKA--VVQVEFSRPDAKELELAGGI 158 >gi|118473512|ref|YP_886961.1| hypothetical protein MSMEG_2624 [Mycobacterium smegmatis str. MC2 155] gi|259585793|sp|A0QVM3|RIMP_MYCS2 RecName: Full=Ribosome maturation factor rimP gi|118174799|gb|ABK75695.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length = 181 Score = 90.1 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 55/149 (36%), Gaps = 10/149 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD-DGNMTLRDCEELSQAISPILD 81 + ++ + + ++ +I + D D + L LS+ S +LD Sbjct: 16 KQVIELLDGEFARAGYEIDDV-VVNAATRPARITIVADGDKGLDLDAVAMLSRLASGLLD 74 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + + Y LEV+SPG+DRP+ + F R G + D L ++ GT Sbjct: 75 TVDTGDTPYVLEVTSPGVDRPLTTEKHFRRARGRKAELSL----ADGSSLTARLGGTDGD 130 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSA 170 + + + + + I + A Sbjct: 131 QVNVVVAQGKDFAVRQ----IPLREITKA 155 >gi|296171599|ref|ZP_06852839.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894054|gb|EFG73816.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 175 Score = 89.7 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 53/148 (35%), Gaps = 8/148 (5%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 + ++ + + + + + D + L LS++ S +LD Sbjct: 9 TQVIELLGGEFARAGYEIEDVVIDARARPPRIMVIADGDKALDLDTIATLSRSASALLDG 68 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 + + Y LEVSSPG+DRP+ + F R G V + D +L G++ T Sbjct: 69 LDDVGDRYVLEVSSPGVDRPLTSEKHFRRARGRKVDVVLS----DGSRLTGRVGETRGDT 124 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSA 170 L + I+ + A Sbjct: 125 VALVV----RAGRDYRLREIARADIAKA 148 >gi|259586224|sp|A9BCI2|RIMP_PROM4 RecName: Full=Ribosome maturation factor rimP Length = 155 Score = 89.7 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 58/146 (39%), Gaps = 2/146 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVER-DDGNMTLRDCEELSQAISP 78 + + + + V++ + +Q+ +++ +++L DC + S+ IS Sbjct: 5 IVTSLKILASNTAADKGLEVVELKFNPHSKPITIQVQIQKKPKKDVSLDDCAQFSELISE 64 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +++ +I Y LE+SSPG+ + DF + G + + K G + Sbjct: 65 TIELSKLINEPYLLEISSPGLGDLLQTDKDFKTFKGFPIEVLFKNNENTKLTKSGLLHER 124 Query: 139 SETGFFLEKEKRGEKDMNELQIAISF 164 S+ + + R K E I + Sbjct: 125 SKEYLLINIKGRISKIPREDVITVQL 150 >gi|320094044|ref|ZP_08025866.1| hypothetical protein HMPREF9005_0478 [Actinomyces sp. oral taxon 178 str. F0338] gi|319979023|gb|EFW10544.1| hypothetical protein HMPREF9005_0478 [Actinomyces sp. oral taxon 178 str. F0338] Length = 161 Score = 89.7 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 60/161 (37%), Gaps = 20/161 (12%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERD--DGN-----MTLRDCE 70 + ++ PV+ + L+++ V+ +G + Sbjct: 4 PARDARLEELLGPVVAREDLELDTVVRTRSGGTPLVRVTVDTPLVEGAGEQARVDSDTLA 63 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 +S+A+S LD + I+G Y LEVS+PG +R + + R G V ++ D Sbjct: 64 AVSRAVSAALDRADPIDGEYLLEVSTPGAERELTEPRHWKRQVGLPVRVKLR----DGGH 119 Query: 131 LIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 + G++ + LE + I + ++ AR Sbjct: 120 VSGRVRAADDVSATLETDGG--------TTTIEYANMKKAR 152 >gi|256824990|ref|YP_003148950.1| hypothetical protein Ksed_11450 [Kytococcus sedentarius DSM 20547] gi|256688383|gb|ACV06185.1| uncharacterized conserved protein [Kytococcus sedentarius DSM 20547] Length = 160 Score = 89.4 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 16/138 (11%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVE-----RDDG-----NMTLRDCE 70 + + + + + + K ++++ VE D G +TL Sbjct: 7 TERVWELSSAAVAPLGLEVPDVVITPAGKRSVVRVLVEPALPVDDAGDTVLEPITLDQVA 66 Query: 71 ELSQAISPILDVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ 129 E ++ +S +D ++ E Y LEVSSPG+DRP+ F R G V + Sbjct: 67 EATELVSTGIDADDPFGEQPYTLEVSSPGVDRPLTSLEHFRRAVGRRVE---FRPLEG-E 122 Query: 130 KLIGKIMGTSETGFFLEK 147 +I +E LE Sbjct: 123 PFTERITRVAEEQIVLED 140 >gi|72161179|ref|YP_288836.1| hypothetical protein Tfu_0775 [Thermobifida fusca YX] gi|91208371|sp|Q47RV4|RIMP_THEFY RecName: Full=Ribosome maturation factor rimP gi|71914911|gb|AAZ54813.1| conserved hypothetical protein [Thermobifida fusca YX] Length = 157 Score = 89.0 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 68/154 (44%), Gaps = 9/154 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G ++ ++ P++ E + + L V D + L E+SQ Sbjct: 1 MGAQARRERLAQLVAPILAEAGLDLEGLDITPVGKRRLVRVVVDSDDGVDLERIGEVSQK 60 Query: 76 ISPILDVENIIEGH-YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 IS LD +++ Y LEV+SPG+DRP+ + R G +V +V +G + + G+ Sbjct: 61 ISTALDEVDVMGQSPYVLEVTSPGVDRPLTEPRHWRRARGRLVHAPLV--AGGQ--VKGR 116 Query: 135 IMGTSETGFFLEKEKRGEK----DMNELQIAISF 164 ++ ETG + + + + D+ ++ + F Sbjct: 117 VIDADETGVTFDVDGQSQVYAFSDLGRGKVQVEF 150 >gi|325299859|ref|YP_004259776.1| Ribosome maturation factor rimP [Bacteroides salanitronis DSM 18170] gi|324319412|gb|ADY37303.1| Ribosome maturation factor rimP [Bacteroides salanitronis DSM 18170] Length = 155 Score = 89.0 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 66/157 (42%), Gaps = 16/157 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +++ ++ + V +S+ + ++++ ++ DG + + DC +LS+ I L E+ Sbjct: 7 VTRIVEEWLDGKDYFLVDVSVSPDDKIVVE--IDHADG-VWIDDCVDLSRYIESRLSRED 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S GI +P + + G V +K G + +E F Sbjct: 64 ---EDYELEVGSAGIGQPFKVLKQYQIYIGKEVEV----MDNTGKKWKGVLADANEENFT 116 Query: 145 LEK------EKRGEKDMNELQIAISFDSLLSARLIVT 175 + E + E + ++D + + +++ Sbjct: 117 VTMTVKVKPEGAKRPKLVEQNVTFTYDEIKYTKYLIS 153 >gi|163753870|ref|ZP_02160993.1| hypothetical protein KAOT1_19647 [Kordia algicida OT-1] gi|161326084|gb|EDP97410.1| hypothetical protein KAOT1_19647 [Kordia algicida OT-1] Length = 155 Score = 88.6 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 37/160 (23%), Positives = 75/160 (46%), Gaps = 17/160 (10%) Query: 23 GDISSVIQPVIEEMS-FRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 ++ ++Q V+EE S + + ++ I ++ D+G +TL DC ++S+ I LD Sbjct: 4 EKVTKLLQEVLEEESSLFLISKEIQAGNKIV--IVIDGDNG-VTLNDCMKVSRHIEHNLD 60 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 E E + LEV S GI + + + G ++ + D QK+ G ++ + Sbjct: 61 RE---EEDFSLEVLSSGISEGITHIRQYKKNVGR----KLEIIMADNQKVTGTLVEADDE 113 Query: 142 GFFLEKEKRGEKDMNELQI------AISFDSLLSARLIVT 175 L+ + R K + + +I I + ++ A+++VT Sbjct: 114 KVKLQWKAREPKPIGKGKITVQKEQEIPYKDIVKAKVMVT 153 >gi|313205356|ref|YP_004044013.1| hypothetical protein Palpr_2899 [Paludibacter propionicigenes WB4] gi|312444672|gb|ADQ81028.1| protein of unknown function DUF150 [Paludibacter propionicigenes WB4] Length = 155 Score = 88.2 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 66/162 (40%), Gaps = 16/162 (9%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 M L I+ +++ ++ + V + + ++ + + ++ DG ++L C EL++ I Sbjct: 1 MILKTTINQIVENYLDNTDYYLVDVKVTQDNR--ISVEIDSFDG-VSLEFCAELNRHIES 57 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 D E + LEVSS G+ P + + G+ V +KL G + Sbjct: 58 QFDRE---VEDFELEVSSAGLTEPFKVLKQYEKNIGNEVETLTK----GGKKLSGVLKEV 110 Query: 139 SETGFFLEKEK------RGEKDMNELQIAISFDSLLSARLIV 174 E F LE EK K + S++ + + I+ Sbjct: 111 HEDNFVLEIEKTEKPEGAKRKTTIIEDVTFSYEDIKYTKYII 152 >gi|311744142|ref|ZP_07717948.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272] gi|311313272|gb|EFQ83183.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272] Length = 160 Score = 88.2 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 72/156 (46%), Gaps = 13/156 (8%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + +++++ +E +++ + +L++ ++ DDG + + +++A++ + Sbjct: 1 MDERFTALVRSCVEPEGLELDDLTISAAGRKRVLRVALDSDDG-VGIDQITAVTRALNAV 59 Query: 80 LD-----VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 LD V + Y LEV+S G+ P+ + R +G +V E+ + + G+ Sbjct: 60 LDDDPAAVAALGGTPYTLEVTSRGVSSPLTSPRHWRRNHGRLVKVELTDGAVE----TGR 115 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 I +++T L +++R + +IA + A Sbjct: 116 ITSSTDTHATLAQQERRGAPTDIREIAYP--EVARA 149 >gi|33863792|ref|NP_895352.1| hypothetical protein PMT1525 [Prochlorococcus marinus str. MIT 9313] gi|51316777|sp|Q7V5M7|RIMP_PROMM RecName: Full=Ribosome maturation factor rimP gi|33635375|emb|CAE21700.1| DUF150 [Prochlorococcus marinus str. MIT 9313] Length = 154 Score = 88.2 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 60/154 (38%), Gaps = 11/154 (7%) Query: 21 LAGDISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGN-MTLRDCEELSQAISP 78 L D+ ++ ++ + + +Q+ + R DG+ ++L DC S ++ Sbjct: 5 LLPDLETLASATAAGKGYKLCCVQVFTHLIPMTIQVQIRRKDGSDVSLDDCAHFSASMDE 64 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 L+ + Y LE+SSPGI + DFL + G V D + G + Sbjct: 65 ALEASQLFTEAYVLEISSPGIGDQLHSDQDFLTFRGFPVEISFRDHDSDLHQ-AGLLHKR 123 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 S+ + + R ++ I ++ RL Sbjct: 124 SDEHVHINIKGRIQR--------IPRKAVTCVRL 149 >gi|124022126|ref|YP_001016433.1| hypothetical protein P9303_04161 [Prochlorococcus marinus str. MIT 9303] gi|167012912|sp|A2C6Q8|RIMP_PROM3 RecName: Full=Ribosome maturation factor rimP gi|123962412|gb|ABM77168.1| DUF150 [Prochlorococcus marinus str. MIT 9303] Length = 154 Score = 87.8 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 60/154 (38%), Gaps = 11/154 (7%) Query: 21 LAGDISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGN-MTLRDCEELSQAISP 78 L D+ ++ ++ + + +Q+ + R DG+ ++L DC S ++ Sbjct: 5 LLPDLETLASATATGKGYKLCCVQVFTHLIPMTIQVQIRRKDGSDVSLDDCAHFSASMDE 64 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 L+ + Y LE+SSPGI + DFL + G V D + G + Sbjct: 65 ALEASQLFTEAYVLEISSPGIGDQLHSDQDFLTFRGFPVEISFRDDDSDLHQ-AGLLHKR 123 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 S+ + + R ++ I ++ RL Sbjct: 124 SDEHVHINIKGRIQR--------IPRKAVTCVRL 149 >gi|288928620|ref|ZP_06422466.1| conserved hypothetical protein [Prevotella sp. oral taxon 317 str. F0108] gi|288329604|gb|EFC68189.1| conserved hypothetical protein [Prevotella sp. oral taxon 317 str. F0108] Length = 154 Score = 87.8 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 58/138 (42%), Gaps = 14/138 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL--DV 82 + +++ + + + V + + ++++ ++ DG + + DC ELS+ I L D Sbjct: 7 VKELVEQWLADKEYFLVDVETSPDSRIVVE--IDHADG-VWIEDCVELSRFIEEHLNRDE 63 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ Y LEV S G+ +P ++ + G V D +K G + Sbjct: 64 ED-----YELEVGSAGLGQPFKVPQQYVNFIGKEVEV----LDKDGKKYKGILKSVDGND 114 Query: 143 FFLEKEKRGEKDMNELQI 160 F + ++ + + + + Sbjct: 115 FVVAVNEKVKVEGKKRPV 132 >gi|126697020|ref|YP_001091906.1| hypothetical protein P9301_16821 [Prochlorococcus marinus str. MIT 9301] gi|166980189|sp|A3PEY0|RIMP_PROM0 RecName: Full=Ribosome maturation factor rimP gi|126544063|gb|ABO18305.1| DUF150 [Prochlorococcus marinus str. MIT 9301] Length = 155 Score = 87.4 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 66/149 (44%), Gaps = 10/149 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLL-QIFVERDDG-NMTLRDCEELSQAISPIL 80 + +++ V + +++ +N ++ +I +++ +G +++L DC + S + Sbjct: 7 SKLEKLLENVANKQDLEIYSLNIQTNQNPIVIEIIIKKTNGNDVSLDDCALFNTPASDEI 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + N++ Y LE+SS G+ + + DF + G V E+ + + L G + S Sbjct: 67 EKSNLLNCSYVLEISSQGVSDELTSERDFKTFKGFPVNVELNQKNSKIKFLNGLLYEKSN 126 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLS 169 + + R +K I FD +L Sbjct: 127 DYLAINIKGRIKK--------IPFDEVLK 147 >gi|304390823|ref|ZP_07372775.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304325706|gb|EFL92952.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 159 Score = 87.4 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 60/153 (39%), Gaps = 16/153 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTL--RDCEELSQAISPILD 81 I V+ PV+E +I++ K+ ++ I ++ DG L E+ S+AI LD Sbjct: 4 IIQVVNPVVEAAGLYLEKIAVTGPKHQRVVAINLDLPDGVDNLGSAQLEDASRAIGAALD 63 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + + G Y LE+S+ G + + R G V Q G + +ET Sbjct: 64 AADPLSGAYTLEISTLGAEHELTNLRLARRALGKDVEVRT-----GGQVRAGILTEVTET 118 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G + + F+ + S R ++ Sbjct: 119 GLSVNDDGDVTVY--------PFEDIESVRTVI 143 >gi|120403302|ref|YP_953131.1| hypothetical protein Mvan_2311 [Mycobacterium vanbaalenii PYR-1] gi|259585796|sp|A1T7H5|RIMP_MYCVP RecName: Full=Ribosome maturation factor rimP gi|119956120|gb|ABM13125.1| protein of unknown function DUF150 [Mycobacterium vanbaalenii PYR-1] Length = 176 Score = 87.0 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 62/149 (41%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 + ++ + + + + + + + D G + L ELS+ S +LD Sbjct: 13 QVVELLDGEFTRAGYDLEDVVIDAASRPPRITVVTDSDHG-LDLDSVAELSRIASELLDG 71 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 + Y LEV+SPG+DRP+ + + R G + + D L G+I G ++ Sbjct: 72 LD--SAPYVLEVTSPGVDRPLTTEKHYRRARGRLAEITLT----DGSVLTGRIGGVADGT 125 Query: 143 F-FLEKEKRGEKDMNELQIAISFDSLLSA 170 + +E R + E I+ +++ A Sbjct: 126 VGVVVREGRSNLSVRE----IALNAIAKA 150 >gi|283769340|ref|ZP_06342239.1| conserved hypothetical protein [Bulleidia extructa W1219] gi|283103997|gb|EFC05381.1| conserved hypothetical protein [Bulleidia extructa W1219] Length = 150 Score = 87.0 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 5/147 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 M +I +++ P +++ F +++ + K LQI V G L C + S+ IS Sbjct: 1 MNRIDEIKALVVPALKKQGFEVEEVTWIS-KERTLQISVHNLQGETDLEACAKASECISD 59 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGH-VVACEIVLSSGDKQKLIGKIMG 137 +LD +++ Y LEV SPG +R + D V E + Q L G ++ Sbjct: 60 MLDENDLMLEGYTLEVCSPGAEREI---QDIHSIQDESYVHVEFKEAMNHHQSLEGYLVP 116 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISF 164 T E +EK K + + I+F Sbjct: 117 TQEGYELHYREKAVLKKVKLNEENIAF 143 >gi|315656400|ref|ZP_07909289.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492959|gb|EFU82561.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 159 Score = 87.0 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 60/153 (39%), Gaps = 16/153 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTL--RDCEELSQAISPILD 81 I V+ PV+E +I++ K+ ++ I ++ DG L E+ S+AI LD Sbjct: 4 IIQVVNPVVEAAGLYLEKIAVTGPKHQRVVAINLDLPDGVDNLGSAQLEDASRAIGAALD 63 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + + G Y LE+S+ G + + R G V Q G + +ET Sbjct: 64 AADPLSGAYTLEISTLGAEHELTNLRLARRALGKDVEVRT-----GGQVRAGILTEVTET 118 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G + + F+ + S R ++ Sbjct: 119 GLSVNDDGDVTVY--------PFEDIESVRTVI 143 >gi|225012170|ref|ZP_03702607.1| protein of unknown function DUF150 [Flavobacteria bacterium MS024-2A] gi|225003725|gb|EEG41698.1| protein of unknown function DUF150 [Flavobacteria bacterium MS024-2A] Length = 154 Score = 87.0 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 78/163 (47%), Gaps = 17/163 (10%) Query: 19 MGLAGDISSVIQPVIEE-MSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M + S+++ +EE S + + + + ++ I ++ D G +TL+DC +S+AI Sbjct: 1 MNFRSKVESLLEAALEEDQSLFLIDLKIGSDNSIH--ITLDGDQG-VTLKDCVNVSRAIE 57 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD E + LEV+S G+ P++ +++ G + E + S L G + Sbjct: 58 HNLDREEY---DFSLEVASAGVGSPLLNSRQYIKNIGRKLRVESMEVS----TLEGTLTA 110 Query: 138 TSETGFFLEKEKRGEKDMNELQI------AISFDSLLSARLIV 174 F LE ++R K + + ++ +S+D + A+++V Sbjct: 111 ADNQAFTLEWKQREAKPVGKGKVTVTKQKTLSYDQISIAKVLV 153 >gi|213021801|ref|ZP_03336248.1| hypothetical protein Salmonelentericaenterica_03335 [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 59 Score = 86.7 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 1/60 (1%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I +E + + V I + + L+I+++ +DG + + DC ++S +S +LDVE+ I Sbjct: 1 MITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVEDPIS 59 >gi|194476585|ref|YP_002048764.1| hypothetical protein PCC_0102 [Paulinella chromatophora] gi|171191592|gb|ACB42554.1| hypothetical protein PCC_0102 [Paulinella chromatophora] Length = 159 Score = 86.7 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 8/114 (7%) Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 + ++++ DC S+ + LD ++++ Y LEVSSPGI+ ++ DF + G V Sbjct: 49 ERDVSINDCTVFSRQVEEALDNSSLLKEAYILEVSSPGINEELINDRDFRIFRGFPVEVV 108 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + S + G ++ + + R + I + ++S LI+ Sbjct: 109 VNKSKTPTNRREGLLLERDDDSILINIRGRIHR--------IPREDVISVHLIM 154 >gi|189459825|ref|ZP_03008610.1| hypothetical protein BACCOP_00455 [Bacteroides coprocola DSM 17136] gi|189433435|gb|EDV02420.1| hypothetical protein BACCOP_00455 [Bacteroides coprocola DSM 17136] Length = 155 Score = 86.7 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 67/157 (42%), Gaps = 16/157 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +++ +E + V +++ + ++++ ++ +G + + DC +LS+ I L+ E Sbjct: 7 VTRIVEEWLEGKDYFLVDVTVTPDDKIVVE--IDHAEG-VWIDDCVDLSRYIESKLNRE- 62 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 E Y LEV S GI +P ++ G V D +K G + +E F Sbjct: 63 --EEDYELEVGSAGIGQPFKVLQQYIIHIGKEVEV----LGKDGKKWTGVLTDANEENFT 116 Query: 145 LEK------EKRGEKDMNELQIAISFDSLLSARLIVT 175 + E + E + +D + + +++ Sbjct: 117 ITVQVKVKPEGAKRPKLVEQNVTFVYDEIKYTKYLIS 153 >gi|288924203|ref|ZP_06418239.1| protein of unknown function DUF150 [Frankia sp. EUN1f] gi|288344450|gb|EFC78943.1| protein of unknown function DUF150 [Frankia sp. EUN1f] Length = 325 Score = 86.7 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 65/180 (36%), Gaps = 29/180 (16%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + S ++P + F +++ + + V D + L + S+ +S Sbjct: 43 AIRAQLRSRLEPRLAAAGFDLEDVTVARAGSRSVVRVVVDRDEGIDLDAVADASRIVSAT 102 Query: 80 LDVEN----------------------IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 LD + + G Y LEV+SPG+DRP+V + R G +V Sbjct: 103 LDEDEQGSAAERGDAAGARPLSGSGAGPLGGPYVLEVTSPGVDRPLVEPRHWRRAVGRLV 162 Query: 118 ACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAIS---FDSLLSARLIV 174 D ++ G+++ + G L + + + + ++ A + V Sbjct: 163 LVR----RADGSEVEGRVLSAGDDGADLAIPTGVARRGRPARTRLERVVYSTVTRATVQV 218 >gi|317504199|ref|ZP_07962193.1| conserved hypothetical protein [Prevotella salivae DSM 15606] gi|315664688|gb|EFV04361.1| conserved hypothetical protein [Prevotella salivae DSM 15606] Length = 186 Score = 86.3 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 66/159 (41%), Gaps = 20/159 (12%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL--DV 82 + +++ + + V I + ++ ++++ ++ DG + + DC +LS+ I L D Sbjct: 38 VKKLVEEWLAGKEYFLVGIEISQDDKIVVE--IDHADG-VWIEDCVDLSKYIEDHLSRDE 94 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ Y LEV S G+ +P ++ + G V D +K G + Sbjct: 95 ED-----YELEVGSAGLGQPFKVLQQYINFIGKEVEV----LDADGKKYQGVLKSVDGND 145 Query: 143 FF------LEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 F ++ E + ++ + D++ + +++ Sbjct: 146 FTVTVNEKVKVEGKKRPQKMDVDHTFNMDNVKYTKYLIS 184 >gi|158313031|ref|YP_001505539.1| hypothetical protein Franean1_1179 [Frankia sp. EAN1pec] gi|259585776|sp|A8L6F1|RIMP_FRASN RecName: Full=Ribosome maturation factor rimP gi|158108436|gb|ABW10633.1| protein of unknown function DUF150 [Frankia sp. EAN1pec] Length = 308 Score = 86.3 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 65/172 (37%), Gaps = 29/172 (16%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ ++P + F +S+ + V DG + L + S+ +S +LD E Sbjct: 35 ELRRRLEPSLTTAGFDLEDVSVTRAGARSVVRVVVDRDGGIDLDAVADASRLVSAVLDGE 94 Query: 84 N----------------------IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 + I G Y LEV+SPG+DRP+V + R G +V Sbjct: 95 DIGTDGAGGTGGSGGAAGGSGASPISGAYVLEVTSPGVDRPLVEPRHWRRAVGRLVVVR- 153 Query: 122 VLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAIS---FDSLLSA 170 D ++ G+++ + G L + ++ I + ++ A Sbjct: 154 ---RADGVEVEGRVLSADDEGADLAVPTAPARRGRPVRRRIERVVYATVARA 202 >gi|33241095|ref|NP_876037.1| hypothetical protein Pro1646 [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|51316781|sp|Q7VA23|RIMP_PROMA RecName: Full=Ribosome maturation factor rimP gi|33238624|gb|AAQ00690.1| Uncharacterized YhbC family conserved protein [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 155 Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 63/143 (44%), Gaps = 11/143 (7%) Query: 37 SFRSVQISLLEE-KNLLLQIFVERDDG-NMTLRDCEELSQAISPILDVENIIEGHYRLEV 94 F +++ +L + K + +Q+ + +G +++L DC LS+ I +++ +I Y LE+ Sbjct: 21 GFEIIRLEVLAQMKPMKIQLQIRHKNGSDVSLEDCSRLSRPIGEVIENSKLINQSYILEI 80 Query: 95 SSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKD 154 SSPG+ + +F + G + S G + S+ + + + K Sbjct: 81 SSPGLSDILETDKEFATFKGFPIQVSTKNKSNSTILQNGLLHTKSKEHLLINIKGKMSK- 139 Query: 155 MNELQIAISFDSLLSARLI-VTD 176 I D+++ RL TD Sbjct: 140 -------IPIDNVIQVRLASPTD 155 >gi|15609979|ref|NP_217358.1| hypothetical protein Rv2842c [Mycobacterium tuberculosis H37Rv] gi|15842383|ref|NP_337420.1| hypothetical protein MT2908 [Mycobacterium tuberculosis CDC1551] gi|31794019|ref|NP_856512.1| hypothetical protein Mb2867c [Mycobacterium bovis AF2122/97] gi|121638722|ref|YP_978946.1| hypothetical protein BCG_2862c [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662683|ref|YP_001284206.1| hypothetical protein MRA_2865 [Mycobacterium tuberculosis H37Ra] gi|148824032|ref|YP_001288786.1| hypothetical protein TBFG_12857 [Mycobacterium tuberculosis F11] gi|167967195|ref|ZP_02549472.1| hypothetical protein MtubH3_03787 [Mycobacterium tuberculosis H37Ra] gi|215404814|ref|ZP_03416995.1| hypothetical protein Mtub0_14218 [Mycobacterium tuberculosis 02_1987] gi|215412674|ref|ZP_03421392.1| hypothetical protein Mtub9_14980 [Mycobacterium tuberculosis 94_M4241A] gi|215428281|ref|ZP_03426200.1| hypothetical protein MtubT9_18553 [Mycobacterium tuberculosis T92] gi|215431784|ref|ZP_03429703.1| hypothetical protein MtubE_14186 [Mycobacterium tuberculosis EAS054] gi|215447096|ref|ZP_03433848.1| hypothetical protein MtubT_14592 [Mycobacterium tuberculosis T85] gi|218754590|ref|ZP_03533386.1| hypothetical protein MtubG1_14629 [Mycobacterium tuberculosis GM 1503] gi|219558859|ref|ZP_03537935.1| hypothetical protein MtubT1_16742 [Mycobacterium tuberculosis T17] gi|224991214|ref|YP_002645903.1| hypothetical protein JTY_2857 [Mycobacterium bovis BCG str. Tokyo 172] gi|253798072|ref|YP_003031073.1| hypothetical protein TBMG_01130 [Mycobacterium tuberculosis KZN 1435] gi|254232937|ref|ZP_04926264.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|254365488|ref|ZP_04981533.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|254551906|ref|ZP_05142353.1| hypothetical protein Mtube_15842 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187858|ref|ZP_05765332.1| hypothetical protein MtubCP_17794 [Mycobacterium tuberculosis CPHL_A] gi|260201973|ref|ZP_05769464.1| hypothetical protein MtubT4_18245 [Mycobacterium tuberculosis T46] gi|260206153|ref|ZP_05773644.1| hypothetical protein MtubK8_17835 [Mycobacterium tuberculosis K85] gi|289444393|ref|ZP_06434137.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] gi|289448504|ref|ZP_06438248.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289553370|ref|ZP_06442580.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289571030|ref|ZP_06451257.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289575543|ref|ZP_06455770.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] gi|289746640|ref|ZP_06506018.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289751503|ref|ZP_06510881.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289754950|ref|ZP_06514328.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|289758962|ref|ZP_06518340.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|289763018|ref|ZP_06522396.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|294994067|ref|ZP_06799758.1| hypothetical protein Mtub2_06033 [Mycobacterium tuberculosis 210] gi|297635455|ref|ZP_06953235.1| hypothetical protein MtubK4_15097 [Mycobacterium tuberculosis KZN 4207] gi|297732454|ref|ZP_06961572.1| hypothetical protein MtubKR_15262 [Mycobacterium tuberculosis KZN R506] gi|298526310|ref|ZP_07013719.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|306777126|ref|ZP_07415463.1| hypothetical protein TMAG_01041 [Mycobacterium tuberculosis SUMu001] gi|306781032|ref|ZP_07419369.1| hypothetical protein TMBG_02983 [Mycobacterium tuberculosis SUMu002] gi|306785670|ref|ZP_07423992.1| hypothetical protein TMCG_02090 [Mycobacterium tuberculosis SUMu003] gi|306789710|ref|ZP_07428032.1| hypothetical protein TMDG_00030 [Mycobacterium tuberculosis SUMu004] gi|306794343|ref|ZP_07432645.1| hypothetical protein TMEG_03985 [Mycobacterium tuberculosis SUMu005] gi|306798767|ref|ZP_07437069.1| hypothetical protein TMFG_00036 [Mycobacterium tuberculosis SUMu006] gi|306804613|ref|ZP_07441281.1| hypothetical protein TMHG_02045 [Mycobacterium tuberculosis SUMu008] gi|306807353|ref|ZP_07444021.1| hypothetical protein TMGG_02026 [Mycobacterium tuberculosis SUMu007] gi|306973242|ref|ZP_07485903.1| hypothetical protein TMJG_01830 [Mycobacterium tuberculosis SUMu010] gi|307080951|ref|ZP_07490121.1| hypothetical protein TMKG_03274 [Mycobacterium tuberculosis SUMu011] gi|307085546|ref|ZP_07494659.1| hypothetical protein TMLG_01328 [Mycobacterium tuberculosis SUMu012] gi|313659786|ref|ZP_07816666.1| ribosome maturation protein RimP [Mycobacterium tuberculosis KZN V2475] gi|54040615|sp|P67215|RIMP_MYCBO RecName: Full=Ribosome maturation factor rimP gi|54042962|sp|P67214|RIMP_MYCTU RecName: Full=Ribosome maturation factor rimP gi|166988534|sp|A1KMI5|RIMP_MYCBP RecName: Full=Ribosome maturation factor rimP gi|166988535|sp|A5U6J4|RIMP_MYCTA RecName: Full=Ribosome maturation factor rimP gi|254801565|sp|C1AFV6|RIMP_MYCBT RecName: Full=Ribosome maturation factor rimP gi|2078017|emb|CAB08448.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv] gi|13882682|gb|AAK47234.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551] gi|31619613|emb|CAD95052.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97] gi|121494370|emb|CAL72851.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124601996|gb|EAY61006.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|134151001|gb|EBA43046.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|148506835|gb|ABQ74644.1| hypothetical protein MRA_2865 [Mycobacterium tuberculosis H37Ra] gi|148722559|gb|ABR07184.1| conserved hypothetical protein [Mycobacterium tuberculosis F11] gi|224774329|dbj|BAH27135.1| hypothetical protein JTY_2857 [Mycobacterium bovis BCG str. Tokyo 172] gi|253319575|gb|ACT24178.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 1435] gi|289417312|gb|EFD14552.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] gi|289421462|gb|EFD18663.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289438002|gb|EFD20495.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289539974|gb|EFD44552.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] gi|289544784|gb|EFD48432.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289687168|gb|EFD54656.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289692090|gb|EFD59519.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289695537|gb|EFD62966.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|289710524|gb|EFD74540.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|289714526|gb|EFD78538.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|298496104|gb|EFI31398.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308214495|gb|EFO73894.1| hypothetical protein TMAG_01041 [Mycobacterium tuberculosis SUMu001] gi|308326140|gb|EFP14991.1| hypothetical protein TMBG_02983 [Mycobacterium tuberculosis SUMu002] gi|308329670|gb|EFP18521.1| hypothetical protein TMCG_02090 [Mycobacterium tuberculosis SUMu003] gi|308333809|gb|EFP22660.1| hypothetical protein TMDG_00030 [Mycobacterium tuberculosis SUMu004] gi|308337335|gb|EFP26186.1| hypothetical protein TMEG_03985 [Mycobacterium tuberculosis SUMu005] gi|308340978|gb|EFP29829.1| hypothetical protein TMFG_00036 [Mycobacterium tuberculosis SUMu006] gi|308346276|gb|EFP35127.1| hypothetical protein TMGG_02026 [Mycobacterium tuberculosis SUMu007] gi|308348793|gb|EFP37644.1| hypothetical protein TMHG_02045 [Mycobacterium tuberculosis SUMu008] gi|308357360|gb|EFP46211.1| hypothetical protein TMJG_01830 [Mycobacterium tuberculosis SUMu010] gi|308361313|gb|EFP50164.1| hypothetical protein TMKG_03274 [Mycobacterium tuberculosis SUMu011] gi|308364914|gb|EFP53765.1| hypothetical protein TMLG_01328 [Mycobacterium tuberculosis SUMu012] gi|323718541|gb|EGB27711.1| hypothetical protein TMMG_03713 [Mycobacterium tuberculosis CDC1551A] gi|326904455|gb|EGE51388.1| hypothetical protein TBPG_02361 [Mycobacterium tuberculosis W-148] gi|328457845|gb|AEB03268.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 4207] Length = 183 Score = 85.9 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 52/150 (34%), Gaps = 11/150 (7%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ + + + + D + L LS+ S +LD Sbjct: 10 QVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSRRASALLDGL 69 Query: 84 N---IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + I G Y LEVSSPG++RP+ + F R G V + D +L G++ Sbjct: 70 DGANKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLS----DGSRLTGRVGEMRA 125 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 L +D I ++ A Sbjct: 126 GTVALVI----REDRGWAVREIPLAEIVKA 151 >gi|306968906|ref|ZP_07481567.1| hypothetical protein TMIG_02342 [Mycobacterium tuberculosis SUMu009] gi|308353519|gb|EFP42370.1| hypothetical protein TMIG_02342 [Mycobacterium tuberculosis SUMu009] Length = 183 Score = 85.5 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 52/150 (34%), Gaps = 11/150 (7%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ + + + + D + L LS+ S +LD Sbjct: 10 QVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSRRASALLDGL 69 Query: 84 N---IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + I G Y LEVSSPG++RP+ + F R G V + D +L G++ Sbjct: 70 DGANKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLS----DGSRLTGRVGEMRA 125 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 L +D I ++ A Sbjct: 126 GTVALVI----REDRGWAVREIPLAEIVKA 151 >gi|299783111|gb|ADJ41109.1| Ribosome maturation factor rimP [Lactobacillus fermentum CECT 5716] Length = 81 Score = 85.5 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 4/82 (4%) Query: 93 EVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGE 152 EVSSPG +RP+ ++ D+ R V + + G + S +E + Sbjct: 2 EVSSPGAERPLKKEVDYQRALDQYVNVSLYQQIDGHKVFEGYLRQLSPDELTIEYMDKTR 61 Query: 153 KDMNELQIAISFDSLLSARLIV 174 + Q+ I D + ARL + Sbjct: 62 QK----QVVIPRDKVAKARLAI 79 >gi|283458509|ref|YP_003363137.1| hypothetical protein RMDY18_14850 [Rothia mucilaginosa DY-18] gi|283134552|dbj|BAI65317.1| uncharacterized protein conserved in archaea [Rothia mucilaginosa DY-18] Length = 223 Score = 85.5 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 70/160 (43%), Gaps = 13/160 (8%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVE---RDDGNMTLRDCEELSQAIS 77 +++ I PVI E S + + N ++I V+ +++L E+S AIS Sbjct: 56 EEEVAEAIAPVISEFSLVLEGLKISGPAANRTVKITVDYTAERTDSLSLDSLAEISGAIS 115 Query: 78 PILDVENIIEG--HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + + Y LEVSSPG R + + + R ++A + D + + ++ Sbjct: 116 SALDRADENDEFFPYELEVSSPGATRALTERRHWERARTRLIAVT----APDGTEYLARL 171 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIA---ISFDSLLSARL 172 + G L ++K +K E + ++++ SA + Sbjct: 172 HEVQDDGPVLARKKNTKKGQKESYHEPSLLPWENIASAHV 211 >gi|41409008|ref|NP_961844.1| hypothetical protein MAP2910c [Mycobacterium avium subsp. paratuberculosis K-10] gi|51316952|sp|Q73VV1|RIMP_MYCPA RecName: Full=Ribosome maturation factor rimP gi|41397367|gb|AAS05227.1| hypothetical protein MAP_2910c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 178 Score = 85.5 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 53/148 (35%), Gaps = 8/148 (5%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 + ++ + + + + D + L LS++ S +LD Sbjct: 9 TQVIELLGGEFARAGYEIEDVVIDAHARPPRITVIADGDDGLDLDAAATLSRSASALLDK 68 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 + IE HY LEVSSPG+DRP+ F R G V + D + G++ T + Sbjct: 69 LDTIEDHYVLEVSSPGVDRPLRTPKHFRRARGRKVDVVLS----DNSTVTGRVGETGDDT 124 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSA 170 L + I ++ A Sbjct: 125 IALVV----RAGRDWAIREIPLGDVVKA 148 >gi|257068212|ref|YP_003154467.1| hypothetical protein Bfae_10290 [Brachybacterium faecium DSM 4810] gi|256559030|gb|ACU84877.1| uncharacterized conserved protein [Brachybacterium faecium DSM 4810] Length = 220 Score = 85.5 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 61/164 (37%), Gaps = 18/164 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDD---GNMTLRDCEELSQAISPIL 80 + V+ ++ + +++ V+ + G+ L E S+A+S + Sbjct: 10 LRETATEVLASHGLVLEEVEIRRGGGTPQVRLIVDLPEDQLGSADLDTVAEASRALSEAV 69 Query: 81 DVENIIEGHY--RLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 D ++ + G LEV++PG+DR + F R G +++ + L +++ Sbjct: 70 DADDAVLGSAPVLLEVTTPGVDRELTAPRHFRRARGRLLSLTT----EEGTTLRARLLAV 125 Query: 139 SETGFFLEKEKRGEKDMNE--------LQIAISFDSLLSARLIV 174 L +E + ++ + + AR+ V Sbjct: 126 DGEELALRQEPGRDDRGRPLKLPAGTTERLRLPLAEVARARVEV 169 >gi|300788186|ref|YP_003768477.1| hypothetical protein AMED_6341 [Amycolatopsis mediterranei U32] gi|299797700|gb|ADJ48075.1| conserved hypothetical protein [Amycolatopsis mediterranei U32] Length = 168 Score = 85.5 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 61/143 (42%), Gaps = 11/143 (7%) Query: 30 QPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV-ENIIE 87 + F + + + L+++ V+ DDG + L + E+S+ +S LD E+++ Sbjct: 2 AEAVTAAGFDLDSFEVQQAGRRQLVKVVVDSDDG-VGLDEIAEISRTVSATLDENEHVLA 60 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LEV+SPG+DRP+ + + R +V + +G++ E + Sbjct: 61 SAYTLEVTSPGLDRPLTQPRHWRRARFRLVKISPAEGAP----FVGRVGHAGEDAARVLA 116 Query: 148 EKRGEK----DMNELQIAISFDS 166 + D+ + + I F Sbjct: 117 GGKLRDVRYADVEKAVVEIEFKQ 139 >gi|118464499|ref|YP_882873.1| hypothetical protein MAV_3696 [Mycobacterium avium 104] gi|166990891|sp|A0QIY5|RIMP_MYCA1 RecName: Full=Ribosome maturation factor rimP gi|118165786|gb|ABK66683.1| conserved hypothetical protein [Mycobacterium avium 104] Length = 178 Score = 85.5 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 53/148 (35%), Gaps = 8/148 (5%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 + ++ + + + + D + L LS++ S +LD Sbjct: 9 TQVIELLGGEFARAGYEIEDVVIDAHARPPRITVIADGDDGLDLDAAATLSRSASALLDK 68 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 + IE HY LEVSSPG+DRP+ F R G V + D + G++ T + Sbjct: 69 LDTIEDHYVLEVSSPGVDRPLRTPKHFRRARGRKVDVVLS----DNSTVTGRVGETGDDT 124 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSA 170 L + I ++ A Sbjct: 125 VALVV----RAGRDWAIREIPLGDVVKA 148 >gi|120434525|ref|YP_860221.1| hypothetical protein GFO_0156 [Gramella forsetii KT0803] gi|166979794|sp|A0LXP9|RIMP_GRAFK RecName: Full=Ribosome maturation factor rimP gi|117576675|emb|CAL65144.1| protein containing DUF150 [Gramella forsetii KT0803] Length = 153 Score = 85.5 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 69/161 (42%), Gaps = 16/161 (9%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L + + + V EE + ISL ++I ++ D+G +++ DC +S+ I L Sbjct: 2 LKEKVEKLAEKVFEENN-SLFLISLDINSANHIKIVLDGDEG-VSVNDCIMVSRGIEHNL 59 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D E E + LEV+S G+ P+ + + G + + + K ++ + Sbjct: 60 DRE---EEDFSLEVTSAGVSEPLSMPRQYKKNIGRRLQVKT-----ENDKFEADLLSADQ 111 Query: 141 TGFFLEKEKRGEKDMN------ELQIAISFDSLLSARLIVT 175 L + R K + + ++ + + ++ A++ +T Sbjct: 112 NEIKLSWKAREPKPVGKGKVTVQKEVVLPYTDIVEAKVKIT 152 >gi|154491956|ref|ZP_02031582.1| hypothetical protein PARMER_01586 [Parabacteroides merdae ATCC 43184] gi|154088197|gb|EDN87242.1| hypothetical protein PARMER_01586 [Parabacteroides merdae ATCC 43184] Length = 157 Score = 85.1 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 66/152 (43%), Gaps = 20/152 (13%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD--V 82 IS +++ + V + + L+ I ++ D+G + + DC ELS+ + LD V Sbjct: 9 ISQLVEEKLASSGNYLVDVVIKPGN--LIIIEIDNDEG-VCIDDCAELSRYVEGHLDRDV 65 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ + LEV S GI P +++ G+ V + KL G + E G Sbjct: 66 ED-----FELEVGSAGITSPFKVLRQYVKNIGNEVEMLLKS----GTKLTGVLKSADENG 116 Query: 143 FFLEKEKRGEKDMNELQIAI------SFDSLL 168 + EK+ + + + ++ + +FD + Sbjct: 117 VVVTVEKQVKPEGAKRKVTVREDQSYTFDEIK 148 >gi|255326387|ref|ZP_05367471.1| conserved hypothetical protein [Rothia mucilaginosa ATCC 25296] gi|255296604|gb|EET75937.1| conserved hypothetical protein [Rothia mucilaginosa ATCC 25296] Length = 223 Score = 84.7 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 70/160 (43%), Gaps = 13/160 (8%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVE---RDDGNMTLRDCEELSQAIS 77 +++ I PVI E S + + N ++I V+ +++L E+S AIS Sbjct: 56 EEEVAEAIAPVISEFSLVLEGLKISGPAANRTVKITVDYTAERTDSLSLDSLAEISGAIS 115 Query: 78 PILDVENIIEG--HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + + Y LEVSSPG R + + + R ++A + D + + ++ Sbjct: 116 SALDRADENDEFFPYELEVSSPGATRALTERRHWERARTRLIAVT----APDGTEYLARL 171 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIA---ISFDSLLSARL 172 + G L ++K +K E + ++++ SA + Sbjct: 172 HEVQDEGPVLARKKNTKKGQKESYHEPSLLPWENIASAHV 211 >gi|325269684|ref|ZP_08136297.1| hypothetical protein HMPREF9141_1507 [Prevotella multiformis DSM 16608] gi|324988052|gb|EGC20022.1| hypothetical protein HMPREF9141_1507 [Prevotella multiformis DSM 16608] Length = 183 Score = 84.7 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 60/143 (41%), Gaps = 14/143 (9%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL--DV 82 + S++ +E + V I + + ++++ ++ DG + + DC ELS+ I L D Sbjct: 35 VKSLVDEWLEGKEYFLVDIQISPDDKIVVE--IDHADG-VWIEDCVELSRYIEDRLSRDE 91 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ Y LEV S G+ +P + + G V D +K+ G + Sbjct: 92 ED-----YELEVGSAGLGQPFKVPQQYQNFIGKEVEV----LDKDGKKVKGVLKSVDGND 142 Query: 143 FFLEKEKRGEKDMNELQIAISFD 165 F + ++ + + + + D Sbjct: 143 FVVAVNEKVHVEGKKRPVKMDVD 165 >gi|42526618|ref|NP_971716.1| hypothetical protein TDE1108 [Treponema denticola ATCC 35405] gi|51316704|sp|Q73NP4|RIMP_TREDE RecName: Full=Ribosome maturation factor rimP gi|41816811|gb|AAS11597.1| conserved hypothetical protein [Treponema denticola ATCC 35405] gi|325473160|gb|EGC76356.1| hypothetical protein HMPREF9353_02549 [Treponema denticola F0402] Length = 148 Score = 84.3 bits (208), Expect = 7e-15, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 64/143 (44%), Gaps = 14/143 (9%) Query: 30 QPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEG 88 +P++E + F+ V +++L +K+ ++ ++ + G + ++DC + + + P ++ I Sbjct: 16 EPLVEGLGFKLVDLNVLHKKDVWQVKAVIKSEKG-VGIKDCTSVHRTLQPRIEAL-IGSQ 73 Query: 89 HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKE 148 +EVSSPGI+R + R +F + G + G I + G L + Sbjct: 74 DVTMEVSSPGINRLVKRAVEFYAFVGEEAQIWDNSITD---WRHGIIKEVNSEGLVLNSD 130 Query: 149 KRGEKDMNELQIAISFDSLLSAR 171 + I I + + AR Sbjct: 131 NQ--------DIQIPYQDIKKAR 145 >gi|89889479|ref|ZP_01200990.1| conserved hypothetical protein [Flavobacteria bacterium BBFL7] gi|89517752|gb|EAS20408.1| conserved hypothetical protein [Flavobacteria bacterium BBFL7] Length = 155 Score = 84.3 bits (208), Expect = 7e-15, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 74/161 (45%), Gaps = 15/161 (9%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L + ++ EE + + + +++ ++ D+G +T+ DC +S+A+ L Sbjct: 2 LKETVQDLLDDAFEERP-DLFLMEMSIDGANEIKVIIDGDEG-VTVADCIFISRAVEHNL 59 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D + + + LEV+S G P+ F R G + +K+K++G+++ + Sbjct: 60 DRDEL---DFSLEVASAGASAPLTLPRQFKRNVGRQLEVINR----EKRKVVGQLVSADD 112 Query: 141 TGFFLEKEKRGEKDMNELQIAIS------FDSLLSARLIVT 175 ++ + R K + + ++ + +D + A++++T Sbjct: 113 ESIAIQWKAREPKPIGKGKVTVEKEWSLKYDDIKQAKVVIT 153 >gi|332878282|ref|ZP_08446008.1| hypothetical protein HMPREF9074_01747 [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683733|gb|EGJ56604.1| hypothetical protein HMPREF9074_01747 [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 155 Score = 84.3 bits (208), Expect = 7e-15, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 66/163 (40%), Gaps = 17/163 (10%) Query: 19 MGLAGDISSVIQPVIEEMS-FRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M + +++ +E + + + + + ++ D+G + + DC LS+A+ Sbjct: 1 MNFKDQVKALVDKALEATPTLFLTDLKVSADNA--ITVVIDGDNG-VGIDDCIALSRAVE 57 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD E + LEV+S G P V + + G V D + G + G Sbjct: 58 APLDAEG---ADFSLEVTSFGATEPFVLPRQYAKNVGRTVQITTT----DGKVQEGVLKG 110 Query: 138 TSETGFFLEKEKRGEKDMNELQIAI------SFDSLLSARLIV 174 ++ LE E R K + + +I + + + A++I+ Sbjct: 111 EADGVVTLETETREPKPVGKGKITVKKEHSFALSDIKEAKVII 153 >gi|218264758|ref|ZP_03478470.1| hypothetical protein PRABACTJOHN_04179 [Parabacteroides johnsonii DSM 18315] gi|218221807|gb|EEC94457.1| hypothetical protein PRABACTJOHN_04179 [Parabacteroides johnsonii DSM 18315] Length = 157 Score = 84.0 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 66/152 (43%), Gaps = 20/152 (13%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD--V 82 IS +++ + V + + L+ I ++ D+G + + DC ELS+ + LD V Sbjct: 9 ISRLVEEKLASSGNYLVDVVIKPGN--LIIIEIDNDEG-VCIDDCAELSRYVEGHLDRDV 65 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ + LEV S GI P +++ G+ V + KL G + E G Sbjct: 66 ED-----FELEVGSAGITSPFKVLRQYVKNIGNEVEMLLKS----GTKLTGVLKSADENG 116 Query: 143 FFLEKEKRGEKDMNELQIAI------SFDSLL 168 + EK+ + + + ++ + +FD + Sbjct: 117 VVVTVEKQVKPEGAKRKVTVQEDQSYTFDEIK 148 >gi|213865085|ref|ZP_03387204.1| hypothetical protein SentesT_35167 [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 57 Score = 84.0 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 1/58 (1%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENI 85 +I +E + + V I + + L+I+++ +DG + + DC ++S +S +LDVE+ Sbjct: 1 MITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVEDP 57 >gi|150003920|ref|YP_001298664.1| hypothetical protein BVU_1353 [Bacteroides vulgatus ATCC 8482] gi|212692746|ref|ZP_03300874.1| hypothetical protein BACDOR_02244 [Bacteroides dorei DSM 17855] gi|237709442|ref|ZP_04539923.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|237724958|ref|ZP_04555439.1| conserved hypothetical protein [Bacteroides sp. D4] gi|254880839|ref|ZP_05253549.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|265754641|ref|ZP_06089693.1| UPF0090 protein [Bacteroides sp. 3_1_33FAA] gi|294775076|ref|ZP_06740605.1| conserved hypothetical protein [Bacteroides vulgatus PC510] gi|319639849|ref|ZP_07994578.1| ribosome maturation factor rimP [Bacteroides sp. 3_1_40A] gi|166977921|sp|A6L028|RIMP_BACV8 RecName: Full=Ribosome maturation factor rimP gi|149932344|gb|ABR39042.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482] gi|212664682|gb|EEB25254.1| hypothetical protein BACDOR_02244 [Bacteroides dorei DSM 17855] gi|229436696|gb|EEO46773.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] gi|229456498|gb|EEO62219.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|254833632|gb|EET13941.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|263234755|gb|EEZ20323.1| UPF0090 protein [Bacteroides sp. 3_1_33FAA] gi|294451120|gb|EFG19591.1| conserved hypothetical protein [Bacteroides vulgatus PC510] gi|317388513|gb|EFV69363.1| ribosome maturation factor rimP [Bacteroides sp. 3_1_40A] Length = 155 Score = 84.0 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 70/157 (44%), Gaps = 16/157 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ ++ +E + V +++ + ++++ ++ +G + + DC ELS+ I LD E Sbjct: 7 VTRIVDEWLEGKDYFLVDVTVSPDDKIVVE--IDHAEG-VWIDDCVELSRYIESKLDRE- 62 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 E Y LEV S GI +P +L G V + +KL G + +E F Sbjct: 63 --EEDYELEVGSAGIGQPFKVLQQYLIHIGKEVEILTK----EGKKLEGVLKDANEENFT 116 Query: 145 LEKEKR------GEKDMNELQIAISFDSLLSARLIVT 175 + EK+ + E I ++D + + +++ Sbjct: 117 VTIEKKVKPEGAKRPKLVEEDITFAYDEIKYTKYLIS 153 >gi|258652413|ref|YP_003201569.1| hypothetical protein Namu_2203 [Nakamurella multipartita DSM 44233] gi|258555638|gb|ACV78580.1| protein of unknown function DUF150 [Nakamurella multipartita DSM 44233] Length = 173 Score = 84.0 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 69/155 (44%), Gaps = 9/155 (5%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 G + +V+ V + ++++ + V D ++L D E+S+ IS LD Sbjct: 6 EGRLRAVVTEVTAARGYDLEELAVRSIGRRRVVRVVVDSDDGVSLDDAAEVSREISERLD 65 Query: 82 V-ENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 ++ + E Y LEV+SPG+ RP+ F R G ++ ++ + G ++ S Sbjct: 66 GPDDPMGEHPYTLEVTSPGVGRPLREPRHFRRARGRLLVVTT-----EQGPVTGHLLRAS 120 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +TG L +K + + ++ +A++ V Sbjct: 121 DTGIELAL--APDKKGVVTVVELPLTAIATAKVEV 153 >gi|260060677|ref|YP_003193757.1| hypothetical protein RB2501_03740 [Robiginitalea biformata HTCC2501] gi|88784807|gb|EAR15976.1| hypothetical protein RB2501_03740 [Robiginitalea biformata HTCC2501] Length = 157 Score = 84.0 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 65/160 (40%), Gaps = 16/160 (10%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L +S ++ + I L + +Q+ ++ D+G ++L+DC ++S+A+ L Sbjct: 6 LEKRVSELLDEALAGRP-ELFLIDLKVNPDQSIQVTLDGDEG-ISLQDCMDISRAVEHSL 63 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D + ++ LEV S G P++ + + G +A +++ G + + Sbjct: 64 DRDEF---NFSLEVGSAGATAPLLMPRQYRKHIGRKLAVRRA-----GKEVQGTLTAADD 115 Query: 141 TGFFLEKEKR------GEKDMNELQIAISFDSLLSARLIV 174 L + R K + I + A++++ Sbjct: 116 KDITLSWKAREPKPVGKGKHTVRKEETIPHSEIEQAKVVL 155 >gi|303235788|ref|ZP_07322395.1| conserved hypothetical protein [Prevotella disiens FB035-09AN] gi|302484235|gb|EFL47223.1| conserved hypothetical protein [Prevotella disiens FB035-09AN] Length = 155 Score = 83.6 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 62/143 (43%), Gaps = 14/143 (9%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL--DV 82 + +++ +E+ + V I L + ++ I ++ DG + + DC ELS+ I L D Sbjct: 7 VKKLVEEWLEDKEYFLVDIQLSPDSRIV--IEIDHADG-VWIEDCVELSKFIEEHLSRDE 63 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ Y LEV S G+ +P ++ + G V + +K+ G + Sbjct: 64 ED-----YELEVGSAGLGQPFKVPQQYINFIGKEVEV----LDKEGRKVKGILKSVEGDD 114 Query: 143 FFLEKEKRGEKDMNELQIAISFD 165 F + ++ + + + + + D Sbjct: 115 FVVSVNEKVQVEGKKRPVKMDVD 137 >gi|332292193|ref|YP_004430802.1| protein of unknown function DUF150 [Krokinobacter diaphorus 4H-3-7-5] gi|332170279|gb|AEE19534.1| protein of unknown function DUF150 [Krokinobacter diaphorus 4H-3-7-5] Length = 154 Score = 83.6 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 74/160 (46%), Gaps = 15/160 (9%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L +++++Q ++E ISL + N ++I ++ D G +T+ DC +S+ + L Sbjct: 2 LKEKVTNLLQEALDENP-SLFLISLDIQGNNEVKIIIDGDSG-VTVEDCMAVSRKVEHNL 59 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D E E + LEV S G P+ + + G + + D +K+ G + ++ Sbjct: 60 DRE---EEDFSLEVMSAGATSPLEIPRQYKKNIGRHLEVKT----QDGEKIEGLMTEATD 112 Query: 141 TGFFLEKEKRGEKDMNELQIAI------SFDSLLSARLIV 174 L + R K + + ++ + ++ ++ A++++ Sbjct: 113 AEITLTWKTREPKPVGKGKVTVEKIETFPYNEIVQAKVMI 152 >gi|305665254|ref|YP_003861541.1| hypothetical protein FB2170_03110 [Maribacter sp. HTCC2170] gi|88710007|gb|EAR02239.1| hypothetical protein FB2170_03110 [Maribacter sp. HTCC2170] Length = 153 Score = 83.6 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 71/161 (44%), Gaps = 18/161 (11%) Query: 21 LAGDISSVI-QPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + S++ + + ++ S + + + + ++ D+G ++++DC ++S+ I Sbjct: 2 LKDKVKSLLNEALSQDESLFLID--FTMGADNSINVVLDGDNG-VSVQDCMKVSRGIEHN 58 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD E E + L V+S G PMV + + G V + + + G + S Sbjct: 59 LDRE---EEDFSLTVTSAGAASPMVNPRQYQKNIGRKVKVQTLENV-----YEGNLTAAS 110 Query: 140 ETGFFLEKEKRGEKDMNELQI------AISFDSLLSARLIV 174 G LE + R K + + + I+F + A++I+ Sbjct: 111 TNGIVLEWKAREPKPIGKGKTTVQKKKEITFSDIKEAKVIL 151 >gi|325280550|ref|YP_004253092.1| Ribosome maturation factor rimP [Odoribacter splanchnicus DSM 20712] gi|324312359|gb|ADY32912.1| Ribosome maturation factor rimP [Odoribacter splanchnicus DSM 20712] Length = 153 Score = 83.2 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 72/158 (45%), Gaps = 20/158 (12%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL- 80 +I +I+PV+ E V++ + ++ ++++FV+ +G + ++ C +S+ I L Sbjct: 3 TEEIKHLIEPVLTEHHLFLVELKISKDN--VIEVFVDALEG-VNIQTCIAVSREIESSLN 59 Query: 81 -DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 D E+ + L VSS G+ P + + + G V ++ D KL G ++ + Sbjct: 60 RDEED-----FELTVSSAGLGYPFKVEQQYQKNLGKSVEIKL----NDHTKLNGILLRFT 110 Query: 140 ETGFFLEKEKR------GEKDMNELQIAISFDSLLSAR 171 +E+E++ K + + + I + + + Sbjct: 111 PEEIVIEQEEKKIIEGSKRKQLVKTERTIVRNDIKEIK 148 >gi|227549049|ref|ZP_03979098.1| conserved hypothetical protein [Corynebacterium lipophiloflavum DSM 44291] gi|227078903|gb|EEI16866.1| conserved hypothetical protein [Corynebacterium lipophiloflavum DSM 44291] Length = 220 Score = 83.2 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 68/167 (40%), Gaps = 22/167 (13%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 +++ +I+P+ ++ + K + I ++ D TL + E +S +S + Sbjct: 48 VDELTRLIEPIAAAHGMDVEKVRTVAAGKKSQVVIALDSDAHP-TLDELEAVSNELSELF 106 Query: 81 DVE----NIIEGH-YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI-GK 134 D +I G Y LEV++PG+D P+ + R G +V ++K G Sbjct: 107 DARENAGDINFGAGYTLEVTTPGVDLPLTEPRHWRRNRGRLVTV-------GEEKFRIGA 159 Query: 135 IMGTSETGFFLEKEKRGEK-------DMNELQIAISFDSLLSARLIV 174 + E + E + + + + I F++ SA+L + Sbjct: 160 LDAAEEHVVLIATETKSPRAEVRPVSGLGPAVVEIEFNTPPSAQLQL 206 >gi|108799046|ref|YP_639243.1| hypothetical protein Mmcs_2079 [Mycobacterium sp. MCS] gi|119868161|ref|YP_938113.1| hypothetical protein Mkms_2125 [Mycobacterium sp. KMS] gi|126434649|ref|YP_001070340.1| hypothetical protein Mjls_2062 [Mycobacterium sp. JLS] gi|123070305|sp|Q1BA97|RIMP_MYCSS RecName: Full=Ribosome maturation factor rimP gi|259585794|sp|A3PY72|RIMP_MYCSJ RecName: Full=Ribosome maturation factor rimP gi|259585795|sp|A1UER5|RIMP_MYCSK RecName: Full=Ribosome maturation factor rimP gi|108769465|gb|ABG08187.1| protein of unknown function DUF150 [Mycobacterium sp. MCS] gi|119694250|gb|ABL91323.1| protein of unknown function DUF150 [Mycobacterium sp. KMS] gi|126234449|gb|ABN97849.1| protein of unknown function DUF150 [Mycobacterium sp. JLS] Length = 192 Score = 83.2 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 57/156 (36%), Gaps = 13/156 (8%) Query: 23 GDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + ++ + + + + + + V+ D + L LS++ S LD Sbjct: 16 EQVKELLDGEFARAGYEIENVVIDGGARPPRITVVVDGDR-PLDLDTVASLSRSASEQLD 74 Query: 82 VEN-------IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 + Y LEV+SPG+DRP+ + + R G V + D +L G+ Sbjct: 75 RVDESGPGVTADAATYVLEVTSPGVDRPLTTEKHYRRARGRKVELTLS----DGSQLTGR 130 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 I + G + R N + + ++ A Sbjct: 131 IGALTADGESVSLVVREGARANFSVRELPLEGIVKA 166 >gi|213964632|ref|ZP_03392832.1| conserved hypothetical protein [Corynebacterium amycolatum SK46] gi|213952825|gb|EEB64207.1| conserved hypothetical protein [Corynebacterium amycolatum SK46] Length = 190 Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 57/157 (36%), Gaps = 14/157 (8%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 I + P + ++ + ++ + + ++ D+ L E+ + +S LD Sbjct: 7 EKIEQFVSPALAQIGLDVEDVKVVRAGAKSQVIVLIDADERP-DLDVLEQATHEVSSALD 65 Query: 82 ------VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 + Y LEVS+PGID P+ + + R G + + D + +I Sbjct: 66 AAEARGEADFGAQGYTLEVSTPGIDAPLTQPRHWRRNRGRIAEISL----ADGSAIAARI 121 Query: 136 --MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 + E L K + + + + ++ A Sbjct: 122 GALSPDEESIILVTSKGPKGRLKAVGQRVQLTNVARA 158 >gi|111023600|ref|YP_706572.1| hypothetical protein RHA1_ro06641 [Rhodococcus jostii RHA1] gi|123339654|sp|Q0S222|RIMP_RHOSR RecName: Full=Ribosome maturation factor rimP gi|110823130|gb|ABG98414.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length = 190 Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 66/150 (44%), Gaps = 12/150 (8%) Query: 23 GDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 ++ +I +++ + +++ L ++ ++I V+ D G + L LS IS + D Sbjct: 7 ERVTELISDLVQRQGYDLEDVAVTLAGRHSAVRIMVDSDAG-LELDAVANLSHEISEVFD 65 Query: 82 -VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 V + E Y LEV+SPGI RP+ + + R G ++ + ++G+I Sbjct: 66 SVSDFGESPYTLEVTSPGIGRPLTHERHWRRARGRRARIDLAH-----ETVVGRIGLLDG 120 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 + R ++ ++A+ + A Sbjct: 121 DSVAVVIGSRTGPEVR--RVALP--DIQKA 146 >gi|282881116|ref|ZP_06289803.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] gi|281304920|gb|EFA96993.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] Length = 155 Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 69/159 (43%), Gaps = 20/159 (12%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL--DV 82 + +V++ +++ + V I + + ++++ ++ DG + + DC ELS+ I L D Sbjct: 7 VKAVVEEWLQDKEYFLVDIEVSPDDKIVVE--IDHVDG-VWIEDCVELSRYIESRLSRDE 63 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ Y LEV S G+ +P ++ + G V D +K+ G + Sbjct: 64 ED-----YELEVGSAGLGQPFKVPQQYINFIGKEVEV----LDRDGKKVQGTLKSVDGND 114 Query: 143 FF------LEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 F ++ E + ++ + A D + + +++ Sbjct: 115 FVVAVDEKVKIEGKKRPEIQSVDHAFQMDQVKYTKYLIS 153 >gi|304383856|ref|ZP_07366313.1| conserved hypothetical protein [Prevotella marshii DSM 16973] gi|304334934|gb|EFM01207.1| conserved hypothetical protein [Prevotella marshii DSM 16973] Length = 155 Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 62/144 (43%), Gaps = 14/144 (9%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL--DV 82 + + ++ +++ + V I + + ++++ ++ DG + + DC LS+ I L D Sbjct: 7 VKAFVEEWLQDKEYFLVDIEISSDNRIVVE--IDHADG-VWIEDCAALSRFIEEHLSRDE 63 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ Y LEV S G+ +P ++ + G V + K G + + Sbjct: 64 ED-----YELEVGSAGLGQPFKVAQQYINFIGKEVEV----LDTEGMKYTGILKHVTGND 114 Query: 143 FFLEKEKRGEKDMNELQIAISFDS 166 F + ++ +++ + I + D Sbjct: 115 FVITVREKQKQEGKKRPIWVDVDK 138 >gi|111225122|ref|YP_715916.1| hypothetical protein FRAAL5763 [Frankia alni ACN14a] gi|111152654|emb|CAJ64395.1| Hypothetical protein FRAAL5763 [Frankia alni ACN14a] Length = 197 Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 9/90 (10%) Query: 61 DGNMTLRDCEELSQAISPILDV-----ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGH 115 DG + L E S+ +S +LD E + G Y LEV+SPG+DRP+ + R G Sbjct: 4 DGGIDLDAVAEASRVVSDLLDAAEAAGEGLSAGPYVLEVTSPGVDRPLTAPRHWRRAVGR 63 Query: 116 VVACEIVLSSGDKQKLIGKIMGTSETGFFL 145 +V + L G+++ E G L Sbjct: 64 LVTVR----DSAGEVLSGRVLSADEAGADL 89 >gi|145224622|ref|YP_001135300.1| hypothetical protein Mflv_4042 [Mycobacterium gilvum PYR-GCK] gi|315444954|ref|YP_004077833.1| hypothetical protein Mspyr1_33870 [Mycobacterium sp. Spyr1] gi|259585792|sp|A4TCF3|RIMP_MYCGI RecName: Full=Ribosome maturation factor rimP gi|145217108|gb|ABP46512.1| protein of unknown function DUF150 [Mycobacterium gilvum PYR-GCK] gi|315263257|gb|ADT99998.1| uncharacterized conserved protein [Mycobacterium sp. Spyr1] Length = 178 Score = 82.4 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 53/147 (36%), Gaps = 9/147 (6%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ + + + + + D + L ELS+ S LD Sbjct: 17 QVVELLDGEFARAGYDIEDVVIDAATRPPRIVVIADGDRGLDLDAVAELSRLASEQLDTL 76 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + Y LEV+SPG+DRP+ + + R G + + D L G+I Sbjct: 77 D--TPPYVLEVTSPGVDRPLTEEKHYRRAQGRLAEVTL----ADGSTLTGRIGAVQNATV 130 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSA 170 L E N I+ D+++ A Sbjct: 131 ALVVR---EARSNLTVRDIALDAVVKA 154 >gi|281422607|ref|ZP_06253606.1| conserved hypothetical protein [Prevotella copri DSM 18205] gi|281403277|gb|EFB33957.1| conserved hypothetical protein [Prevotella copri DSM 18205] Length = 155 Score = 82.4 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 63/145 (43%), Gaps = 14/145 (9%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL--DV 82 + +++ +++ + V I + + ++++ ++ DG + + DC LS+ I L D Sbjct: 7 VKKLVEEWLQDKEYFLVSIEISPDDRIVVE--IDHADG-VWIEDCVALSKYIEDHLNRDE 63 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ Y LEV S G+ +P ++ + G V D +K+ G + Sbjct: 64 ED-----YELEVGSAGLGQPFKVPQQYINFIGKEVEV----LDADGKKVKGILKAVEGND 114 Query: 143 FFLEKEKRGEKDMNELQIAISFDSL 167 F + E++ + + + + D + Sbjct: 115 FTVGVEEKVKVEGKKRPVKQEVDHV 139 >gi|256820093|ref|YP_003141372.1| hypothetical protein Coch_1263 [Capnocytophaga ochracea DSM 7271] gi|256581676|gb|ACU92811.1| protein of unknown function DUF150 [Capnocytophaga ochracea DSM 7271] Length = 155 Score = 82.0 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 66/162 (40%), Gaps = 15/162 (9%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 M + ++ + E L + +++ ++ D G + + DC ELS+AI Sbjct: 1 MNFKDQVKELVNKALSEHP-ELFLTDLSVGTDNTIRVTIDGDKG-VGIDDCIELSRAIEN 58 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LD E + LEV+S G P V + + + G V + D + G + G Sbjct: 59 SLDRE---AMDFALEVTSFGATEPFVMERQYAKNAGRTVQITTL----DGKTHEGLLKGI 111 Query: 139 SETGFFLEKEKRGEKDMNELQIAI------SFDSLLSARLIV 174 +E +E E R K + + +I + + + ++I+ Sbjct: 112 AEGNVIIETETREPKPVGKGKITVKKEHLFALTDIKETKIII 153 >gi|149370940|ref|ZP_01890535.1| hypothetical protein SCB49_04625 [unidentified eubacterium SCB49] gi|149355726|gb|EDM44284.1| hypothetical protein SCB49_04625 [unidentified eubacterium SCB49] Length = 153 Score = 82.0 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 71/161 (44%), Gaps = 18/161 (11%) Query: 21 LAGDISSVIQPVIEEM-SFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + ++ ++ ++E S + + + + +++ ++ DDG + + DC +S+A+ Sbjct: 1 MREEVEKLLDKALKENPSLFLIDLEVTADNQ--IRVTIDGDDG-VKVEDCIAVSRAVEHN 57 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD E + ++V S G P+ + +++ G V + +K+ ++ Sbjct: 58 LDEEL----DFSIDVMSCGASEPLTMQRQYVKNVGRNVLVKT----DKGEKIEATLVAAD 109 Query: 140 ETGFFLEKEKRGEKDMNELQIA------ISFDSLLSARLIV 174 E L + R K + + ++ I ++ ++ ++++ Sbjct: 110 EENITLNWKAREPKPVGKGKVTVKKEAVIPYNEIVQTKVMI 150 >gi|325856505|ref|ZP_08172194.1| hypothetical protein HMPREF9303_1606 [Prevotella denticola CRIS 18C-A] gi|325483474|gb|EGC86447.1| hypothetical protein HMPREF9303_1606 [Prevotella denticola CRIS 18C-A] Length = 155 Score = 82.0 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 60/143 (41%), Gaps = 14/143 (9%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL--DV 82 + S++ +E + V I + + ++++ ++ DG + + DC ELS+ I L D Sbjct: 7 VKSLVDEWLEGKEYFLVDIQISPDDKIVVE--IDHADG-VWIEDCVELSRYIEDRLSRDE 63 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ Y LEV S G+ +P + + G V D +K+ G + Sbjct: 64 ED-----YELEVGSAGLGQPFKVPQQYQNFIGKEVEV----LDKDGKKVKGVLKSVDGND 114 Query: 143 FFLEKEKRGEKDMNELQIAISFD 165 F + ++ + + + + D Sbjct: 115 FVVAVNEKVHVEGKKRPVKMDVD 137 >gi|224025209|ref|ZP_03643575.1| hypothetical protein BACCOPRO_01943 [Bacteroides coprophilus DSM 18228] gi|224018445|gb|EEF76443.1| hypothetical protein BACCOPRO_01943 [Bacteroides coprophilus DSM 18228] Length = 155 Score = 82.0 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 68/159 (42%), Gaps = 16/159 (10%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 +I+ V+ +E+ + V + + + ++++ ++ DG + + DC LS+ + L Sbjct: 5 QEITDVVNKWLEDKEYFLVDVQISADSRIVVE--IDHRDG-VWIDDCVNLSRYLEETLGE 61 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 G Y LEV S G+ +P + G V D +KL G + SE G Sbjct: 62 R---LGDYELEVGSAGLGQPFKVLRQYEAHVGSSVEVCTK----DGRKLHGVLQSASEEG 114 Query: 143 FFLEKEKRGEKDMN------ELQIAISFDSLLSARLIVT 175 F L E R + E ++ ++D + + +++ Sbjct: 115 FTLLTEVRERPEGAKRPRWVEHELHFTYDEIKYTKYLIS 153 >gi|327313034|ref|YP_004328471.1| hypothetical protein HMPREF9137_0747 [Prevotella denticola F0289] gi|326946205|gb|AEA22090.1| conserved hypothetical protein [Prevotella denticola F0289] Length = 155 Score = 82.0 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 60/143 (41%), Gaps = 14/143 (9%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL--DV 82 + S++ +E + V I + + ++++ ++ DG + + DC ELS+ I L D Sbjct: 7 VKSLVDEWLEGKEYFLVDIQISPDDKIVVE--IDHADG-VWIEDCVELSRYIEDRLSRDE 63 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ Y LEV S G+ +P + + G V D +K+ G + Sbjct: 64 ED-----YELEVGSAGLGQPFKVPQQYQNFIGKEVEV----LDKDGKKVKGVLKSVDGND 114 Query: 143 FFLEKEKRGEKDMNELQIAISFD 165 F + ++ + + + + D Sbjct: 115 FVVAVNEKVHVEGKKRPVKMDVD 137 >gi|198277416|ref|ZP_03209947.1| hypothetical protein BACPLE_03630 [Bacteroides plebeius DSM 17135] gi|198269914|gb|EDY94184.1| hypothetical protein BACPLE_03630 [Bacteroides plebeius DSM 17135] Length = 155 Score = 81.3 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 69/157 (43%), Gaps = 16/157 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +++ +E+ S+ V +++ + ++++ ++ +G + + DC ELS+ I L E Sbjct: 7 VARIVEEWLEDKSYFLVDVNVSPDDKIVVE--IDHAEG-VWIDDCVELSRYIESKLSRE- 62 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 E Y LEV S GI +P ++ G V +K G + +E F Sbjct: 63 --EEDYELEVGSAGIGQPFKVLQQYVAHVGCEVEV----LDKTGKKWTGVLADANEENFT 116 Query: 145 ------LEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 ++ E + E + ++D + + +++ Sbjct: 117 VTVEVKIKPEGAKRPKLVEQNVTFTYDEIKYTKYLIS 153 >gi|317968932|ref|ZP_07970322.1| hypothetical protein SCB02_05303 [Synechococcus sp. CB0205] Length = 122 Score = 81.3 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 9/115 (7%) Query: 60 DDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVAC 119 D G+++L +C S + ++ +++ Y LEVSSPG+ + DF + G V+ Sbjct: 11 DGGDVSLDNCASFSGVLGDAIENSGLLQDPYVLEVSSPGVSEQLSDDRDFRSFRGFPVSI 70 Query: 120 EIVL-SSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 SG + G ++ E L R + I ++S +L+ Sbjct: 71 RYRDTKSGGDNEREGLLLERDEENVLLNVRGR--------TVRIPRPDVISVKLV 117 >gi|163786552|ref|ZP_02181000.1| hypothetical protein FBALC1_15242 [Flavobacteriales bacterium ALC-1] gi|159878412|gb|EDP72468.1| hypothetical protein FBALC1_15242 [Flavobacteriales bacterium ALC-1] Length = 154 Score = 80.9 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 70/154 (45%), Gaps = 15/154 (9%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + ++Q ++E I + ++I ++ D+G + + DC +S+AI +D + Sbjct: 6 VEDLLQNALDERQ-DLFLIDFTLSGDNAIKIVIDGDNG-VLVEDCMYISRAIEHNIDRD- 62 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 E + LEV S G P+ + + G + + D Q L GK++ +E G Sbjct: 63 --EHDFSLEVLSSGATTPLTLPRQYKKHIGRDLEVKT----NDSQSLEGKLIDVNEQGVV 116 Query: 145 LEKEKRGEKDMNELQIA------ISFDSLLSARL 172 L + R K + + ++ ++F+++ A++ Sbjct: 117 LTWKAREPKPVGKGKVTVTKEANVTFENIKEAKV 150 >gi|282859023|ref|ZP_06268159.1| conserved hypothetical protein [Prevotella bivia JCVIHMP010] gi|282588191|gb|EFB93360.1| conserved hypothetical protein [Prevotella bivia JCVIHMP010] Length = 155 Score = 80.9 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 60/143 (41%), Gaps = 14/143 (9%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL--DV 82 + ++ +E+ + V I + + ++++ ++ DG + + DC ELS+ I L D Sbjct: 7 VKKLVDEWLEDKDYFLVDIQISSDDKIVVE--IDHADG-VWIEDCVELSKYIEEHLSRDE 63 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 + Y LEV S G+ +P + + G V D +K+ G + Sbjct: 64 AD-----YELEVGSAGLGQPFKVPQQYENFVGKEVEV----LDKDGKKIKGILKSVDGDN 114 Query: 143 FFLEKEKRGEKDMNELQIAISFD 165 F + ++ + + + I + D Sbjct: 115 FIVAVNEKVQVEGKKRPIKMDVD 137 >gi|332520008|ref|ZP_08396472.1| protein of unknown function DUF150 [Lacinutrix algicola 5H-3-7-4] gi|332044567|gb|EGI80761.1| protein of unknown function DUF150 [Lacinutrix algicola 5H-3-7-4] Length = 153 Score = 80.5 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 69/155 (44%), Gaps = 18/155 (11%) Query: 25 ISSVIQPVIEE-MSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++I +EE + +++ + + + ++ D+G +T+ DC +S+A+ LD E Sbjct: 6 VKNLINEALEERADLFLIDLTI--GGDNAINVIIDGDNG-VTVEDCILISRAVEHNLDRE 62 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 E + +EV+S G + F + G + + + ++ E G Sbjct: 63 ---EQDFSIEVASAGAAASLTLPRQFKKNIGRTLEVKTQT-----ETFEANLVSADENGI 114 Query: 144 FLEKEKRGEKDMNELQIA------ISFDSLLSARL 172 LE + R K + + ++ I+++ ++ A++ Sbjct: 115 SLEWKAREPKPVGKGKVTVQKQTNIAYNDIVEAKV 149 >gi|330836561|ref|YP_004411202.1| Ribosome maturation factor rimP [Spirochaeta coccoides DSM 17374] gi|329748464|gb|AEC01820.1| Ribosome maturation factor rimP [Spirochaeta coccoides DSM 17374] Length = 166 Score = 80.5 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 66/153 (43%), Gaps = 5/153 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQI-SLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 ++ +I + P++ + V + + + + + ++ ++ DC ++ + ++ Sbjct: 7 VSNEIYKELNPLVRSLGLDIVSVSRNVRQGASSVFLVIKASGRPTSVDDCAKVHRLVASR 66 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 L++ + LEVS+PG+ R +F + G V S ++Q + G I S Sbjct: 67 LEML-WQDRELSLEVSTPGLQRNFSDVQEFSLFTGDRVRI---FDSQEEQWISGIIDEVS 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + G L + + ++ I +D + A+L Sbjct: 123 DAGVILTQVVGETAEPLAERMNIPYDRIKKAKL 155 >gi|254821856|ref|ZP_05226857.1| hypothetical protein MintA_18122 [Mycobacterium intracellulare ATCC 13950] Length = 170 Score = 80.5 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 53/148 (35%), Gaps = 8/148 (5%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 + ++ + + + + D + L LS++ S +LD Sbjct: 9 TQVIELLDAEFARAGYEIEDVVIDARTRPPRITVIADGDDGLDLDTAATLSRSASALLDD 68 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 + I HY LEVSS G+DRP+ F R G V + D L G+I T+E Sbjct: 69 LDTIGDHYVLEVSSRGVDRPLTSAKHFRRARGRKVDLTLS----DGSTLTGRIGETNEDA 124 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSA 170 L + IS ++ A Sbjct: 125 VALVV----RTGRDWAIREISLGDVVKA 148 >gi|281424956|ref|ZP_06255869.1| conserved hypothetical protein [Prevotella oris F0302] gi|281400800|gb|EFB31631.1| conserved hypothetical protein [Prevotella oris F0302] Length = 155 Score = 80.5 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 64/159 (40%), Gaps = 20/159 (12%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL--DV 82 + ++ + + + V I + + ++++ ++ DG + + DC LS+ I L D Sbjct: 7 VKKLVDEWLADKEYFLVGIDISPDDKIVVE--IDHADG-VWIEDCVALSKYIEDRLSRDE 63 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ Y LEV S G+ +P ++ + G V D +K G + Sbjct: 64 ED-----YELEVGSAGLGQPFKVMQQYVNFIGKEVEV----MDADGKKFQGVLKSVDGND 114 Query: 143 FF------LEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 F ++ E + ++ A D++ + +++ Sbjct: 115 FTVTVNEKVKVEGKKRPQKMDVDHAFKMDNVKYTKYLIS 153 >gi|288801647|ref|ZP_06407089.1| conserved hypothetical protein [Prevotella melaninogenica D18] gi|302344942|ref|YP_003813295.1| hypothetical protein HMPREF0659_A5169 [Prevotella melaninogenica ATCC 25845] gi|288335689|gb|EFC74122.1| conserved hypothetical protein [Prevotella melaninogenica D18] gi|302149852|gb|ADK96114.1| conserved hypothetical protein [Prevotella melaninogenica ATCC 25845] Length = 155 Score = 80.5 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 61/143 (42%), Gaps = 14/143 (9%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL--DV 82 + S++ +E + V I + + ++++ ++ DG + + DC ELS+ I L D Sbjct: 7 VKSLVDEWLEGKEYFLVDIQISSDDKIVVE--IDHADG-VWIEDCVELSKYIEDRLSRDE 63 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ Y LEV S G+ +P + + G V D +K+ G + Sbjct: 64 ED-----YELEVGSAGLGQPFKVPQQYQNFIGKEVEV----LGKDGKKVKGILKSVDGND 114 Query: 143 FFLEKEKRGEKDMNELQIAISFD 165 F + ++ + + + + + D Sbjct: 115 FVVAVNEKVQVEGKKRPVKMDVD 137 >gi|300774924|ref|ZP_07084787.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910] gi|300506739|gb|EFK37874.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910] Length = 155 Score = 80.1 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 68/163 (41%), Gaps = 17/163 (10%) Query: 19 MGLAGDISSVIQPVIE-EMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M I ++ +E + + + + + + ++ D+G ++L+DC + S+AI Sbjct: 1 MEFRKRIEELLNEFLETRKDLFLIDLKISAGDD--ITVILDGDNG-VSLQDCLDASRAIE 57 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +D E E + L+V S G+ P+ F + G + + D K+ G++ Sbjct: 58 FNMDRE---EHDFSLQVMSAGLSEPLSTPRQFSKNIGREIEVML----EDSSKIEGELSK 110 Query: 138 TSETGFFLEKEKRGEKDMNELQI------AISFDSLLSARLIV 174 + L R KD+ + ++ I + + A +++ Sbjct: 111 VDDEKITLVLRYRKPKDIGKGKVDVEEEKEIPYSEIKKALVVI 153 >gi|298206856|ref|YP_003715035.1| hypothetical protein CA2559_01345 [Croceibacter atlanticus HTCC2559] gi|83849490|gb|EAP87358.1| hypothetical protein CA2559_01345 [Croceibacter atlanticus HTCC2559] Length = 153 Score = 80.1 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 72/160 (45%), Gaps = 16/160 (10%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L + ++Q V+++ I + + I ++ D+G +T+ DC +S+AI L Sbjct: 2 LKEKVDKLLQAVLDDNP-SLFLIDYNITNDNSIGILIDGDNG-VTVEDCITVSRAIEHNL 59 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D E E + LEV S G + +++ G V++ + + +K+ +++ + Sbjct: 60 DRE---EEDFSLEVGSIGATASLTLPRQYVKNIGRVLSVKT-----ETEKIEAELVSADD 111 Query: 141 TGFFLEKEKR------GEKDMNELQIAISFDSLLSARLIV 174 L+ + R K E + I ++ ++ A++++ Sbjct: 112 NEIALKWKAREPKPVGKGKHTVEKEAVIPYEKIVEAKVMI 151 >gi|123969227|ref|YP_001010085.1| hypothetical protein A9601_16951 [Prochlorococcus marinus str. AS9601] gi|166980197|sp|A2BT67|RIMP_PROMS RecName: Full=Ribosome maturation factor rimP gi|123199337|gb|ABM70978.1| DUF150 [Prochlorococcus marinus str. AS9601] Length = 155 Score = 80.1 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 68/149 (45%), Gaps = 2/149 (1%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLL-QIFVERDDGN-MTLRDCEELSQAISPIL 80 + ++++ V E +++ +N ++ +I + + +G+ ++L DC + S + Sbjct: 7 SKLEALLEKVANERDLEICGLNIQTNQNPVVIEITIRKTNGDDISLDDCALFNTPASDEI 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + N++ Y LE+SS G+ + + DF + G V E+ + + L G + S+ Sbjct: 67 EKSNLLNCSYVLEISSQGVSDELTSERDFKTFKGFPVNVELNQKNSKIKILNGLLYEKSK 126 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLS 169 + + + +K + + IS +L Sbjct: 127 DYLAINIKGKIKKIPFDEVLKISLCTLKD 155 >gi|213962899|ref|ZP_03391159.1| conserved hypothetical protein [Capnocytophaga sputigena Capno] gi|213954556|gb|EEB65878.1| conserved hypothetical protein [Capnocytophaga sputigena Capno] Length = 155 Score = 79.7 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 65/162 (40%), Gaps = 15/162 (9%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 M + ++ + L + ++I ++ D G + + DC ELS+A+ Sbjct: 1 MNFKDQVKELVDKALSNHP-ELFLTDLTVGTDNTIRITIDGDKG-VCIDDCIELSRAVEG 58 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LD E + + LEV+S G P V + + + G V + D + G + G Sbjct: 59 ALDRETV---DFALEVTSFGATEPFVMERQYTKNAGRTVQITTL----DGKTHEGVLKGL 111 Query: 139 SETGFFLEKEKRGEKDMNELQIAI------SFDSLLSARLIV 174 E LE E R K + + +I + + + ++I+ Sbjct: 112 QEGKAVLETETREPKPVGKGKITVKKEQLFALTDIKETKVII 153 >gi|260591779|ref|ZP_05857237.1| conserved hypothetical protein [Prevotella veroralis F0319] gi|260536063|gb|EEX18680.1| conserved hypothetical protein [Prevotella veroralis F0319] Length = 155 Score = 79.7 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 61/143 (42%), Gaps = 14/143 (9%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL--DV 82 + S++ +E + V I + + ++++ ++ DG + + DC ELS+ I L D Sbjct: 7 VKSLVDEWLEGKEYFLVDIQISPDDKIVVE--IDHADG-VWIEDCVELSKYIEDRLSRDE 63 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ Y LEV S G+ +P + + G V D +K+ G + Sbjct: 64 ED-----YELEVGSAGLGQPFKVPQQYQNFIGKEVEV----LDKDGKKVKGVLKSVDGND 114 Query: 143 FFLEKEKRGEKDMNELQIAISFD 165 F + ++ + + + + + D Sbjct: 115 FIVAVNEKVQVEGKKRPVKMDVD 137 >gi|78189425|ref|YP_379763.1| hypothetical protein Cag_1464 [Chlorobium chlorochromatii CaD3] gi|91208007|sp|Q3AQK5|RIMP_CHLCH RecName: Full=Ribosome maturation factor rimP gi|78171624|gb|ABB28720.1| conserved hypothetical protein [Chlorobium chlorochromatii CaD3] Length = 179 Score = 79.7 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 59/151 (39%), Gaps = 16/151 (10%) Query: 35 EMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQAISPILDVEN-IIEGHYRL 92 V ++L L++ V+ D G + + C +S+ I L+ ++ + + Sbjct: 24 AEGVYVVSVALKGRAGQQKLEVLVDSDKG-IAVEQCAWVSRRILEKLEEDDEPLSEEIAI 82 Query: 93 EVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS----------ETG 142 EVSSPG+ P+ + R G ++ G + ++ G + ++ Sbjct: 83 EVSSPGLGTPLQLPRQYYRHLGKLLHVRYRTPEGAEAEIEGYLQEAQLDGVNGGDSADSV 142 Query: 143 FFLEKEKRGEKDMNE---LQIAISFDSLLSA 170 L+ + +G++ N I + ++ A Sbjct: 143 IVLKPKVQGKRPRNAQPLENIRLPLSRIIKA 173 >gi|240146878|ref|ZP_04745479.1| protein associated with NUS operon [Roseburia intestinalis L1-82] gi|257200976|gb|EEU99260.1| protein associated with NUS operon [Roseburia intestinalis L1-82] Length = 74 Score = 79.7 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 40/68 (58%), Gaps = 2/68 (2%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPIL 80 +I P+++ M+F V + ++E L+ +++++ G +T+ DCE +++ ++ IL Sbjct: 8 ETRTEELITPILDRMNFELVDVEYVKEGGAWYLRAYIDKE-GGITVNDCEAVAREMNEIL 66 Query: 81 DVENIIEG 88 D E+ +E Sbjct: 67 DREDFVED 74 >gi|72382860|ref|YP_292215.1| hypothetical protein PMN2A_1022 [Prochlorococcus marinus str. NATL2A] gi|72002710|gb|AAZ58512.1| conserved hypothetical protein [Prochlorococcus marinus str. NATL2A] Length = 183 Score = 79.7 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 62/155 (40%), Gaps = 11/155 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVE--RDDGNMTLRDCEELSQAISP 78 ++ + F + N L +Q+ + D +T+ DC LSQ I Sbjct: 33 VSELKVLTAKSATNYGFDVTDFKMFTHLNPLSIQVNIRHKNPDKKVTIDDCSILSQYIDE 92 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 + +I++ + LE+SS GI + + DF + G V +Q++ G ++ Sbjct: 93 AIQGSSILDQPFNLEISSEGIGDFLTEEKDFQTFKGFPVEVSYQDLKKIEQQINGLLLKR 152 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 ++ + ++ + ++ I + ++ RL Sbjct: 153 TDNELHINQKGKTQR--------IPVEDVIQVRLA 179 >gi|300727484|ref|ZP_07060875.1| conserved hypothetical protein [Prevotella bryantii B14] gi|299775187|gb|EFI71788.1| conserved hypothetical protein [Prevotella bryantii B14] Length = 155 Score = 79.7 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 65/157 (41%), Gaps = 16/157 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + ++ +E+ + V I + + ++++ ++ DG + + DC ELS+ + LD + Sbjct: 7 VKKLVDEWLEDKEYFLVDIQISPDDKIVVE--IDHADG-VWIEDCAELSRFVQEHLDRD- 62 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF- 143 + Y LEV S G+ +P ++ G V +K+ G + F Sbjct: 63 --QEDYELEVGSAGVGQPFKVAQQYVNNIGKEVEV----LDNTGKKIKGILKSVDGNNFV 116 Query: 144 -----FLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 ++ E + + ++ A D + + +++ Sbjct: 117 VSVSEKVKVEGKKRPVLQDVDYAFLMDQVKYTKYVIS 153 >gi|288925327|ref|ZP_06419261.1| conserved hypothetical protein [Prevotella buccae D17] gi|315606723|ref|ZP_07881733.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] gi|288337798|gb|EFC76150.1| conserved hypothetical protein [Prevotella buccae D17] gi|315251578|gb|EFU31557.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] Length = 155 Score = 79.7 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 64/138 (46%), Gaps = 14/138 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL--DV 82 + ++++ +++ + V I + ++ ++++ ++ DG + + DC ELS+ I L D Sbjct: 7 VKTLVEEWLQDKEYFLVDIQIGQDDKIVVE--IDHADG-VWIEDCVELSKYIEDRLSRDE 63 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ Y LEV S G+ +P ++ + G V GD +K+ G + Sbjct: 64 ED-----YELEVGSAGLGQPFKVAQQYINFIGKEVEV----LDGDGKKVKGLLKSVDGND 114 Query: 143 FFLEKEKRGEKDMNELQI 160 F + ++ + + + + Sbjct: 115 FVVSVNEKVKVEGKKRPV 132 >gi|307565720|ref|ZP_07628189.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A] gi|307345546|gb|EFN90914.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A] Length = 155 Score = 79.3 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 59/143 (41%), Gaps = 14/143 (9%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL--DV 82 + ++ +E + V I + E ++++ ++ DG + + DC ELS+ I L D Sbjct: 7 VKKLVSEWLEGKEYFLVDIQISSENKIVVE--IDHADG-VWIEDCVELSKYIEEHLSRDE 63 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 + Y LEV S G+ +P ++ + G V + +K+ G + Sbjct: 64 AD-----YELEVGSAGLGQPFKVAQQYINFIGKEVEV----LDKEGKKVKGLLKSVDGDE 114 Query: 143 FFLEKEKRGEKDMNELQIAISFD 165 F + ++ + + + + D Sbjct: 115 FIVAVNEKVRIEGKKRPVKMDVD 137 >gi|261881034|ref|ZP_06007461.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270332216|gb|EFA43002.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 155 Score = 79.3 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 59/136 (43%), Gaps = 10/136 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + ++++ + + V I + + N + + ++ DG + + DC ELS+ I LD E Sbjct: 7 VKNIVEEWLAGKEYFLVDIKV--DSNDKITVEIDHADG-VYINDCVELSKFIESQLDRE- 62 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 + Y LEV S GI +P + ++ G V D +K+ G + F Sbjct: 63 --QEDYELEVGSAGIGQPFKVEQQYVNHIGKPVEV----LDADGKKVRGVLKSVEGRDFV 116 Query: 145 LEKEKRGEKDMNELQI 160 + ++ + + + + Sbjct: 117 VSVNEKVKVEGKKRPV 132 >gi|299142251|ref|ZP_07035384.1| conserved hypothetical protein [Prevotella oris C735] gi|298576340|gb|EFI48213.1| conserved hypothetical protein [Prevotella oris C735] Length = 155 Score = 79.3 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 64/159 (40%), Gaps = 20/159 (12%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL--DV 82 + ++ + + + V I + + ++++ ++ DG + + DC LS+ I L D Sbjct: 7 VKRLVDEWLADKEYFLVGIDISPDDKIVVE--IDHADG-VWIEDCVALSKYIEDRLSRDE 63 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ Y LEV S G+ +P ++ + G V D +K G + Sbjct: 64 ED-----YELEVGSAGLGQPFKVVQQYVNFIGKEVEV----MDADGKKFQGVLKSVDGND 114 Query: 143 FF------LEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 F ++ E + ++ A D++ + +++ Sbjct: 115 FTVTVNEKVKVEGKKRPQKMDVDHAFKMDNVKYTKYLIS 153 >gi|300743964|ref|ZP_07072984.1| conserved hypothetical protein [Rothia dentocariosa M567] gi|300380325|gb|EFJ76888.1| conserved hypothetical protein [Rothia dentocariosa M567] Length = 221 Score = 79.3 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 74/160 (46%), Gaps = 13/160 (8%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDG---NMTLRDCEELSQAIS 77 +++ I+PV+ E S +I + N ++I V+ + +++L E+S AIS Sbjct: 54 EDEVNEAIKPVLSEFSLVLERIKISGPAANRTVEITVDYTEDRTDSLSLDSLAEISGAIS 113 Query: 78 PILDVENIIEG--HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + + Y LEVSSPG R + + + R +VA D + + ++ Sbjct: 114 QALDKADKHDEFFPYMLEVSSPGATRELTERRHWKRARTRLVAVT----QTDGTEYVARL 169 Query: 136 MGTSETGFFLEKEKRGEKDMNELQ---IAISFDSLLSARL 172 ++ G L ++K+ +K + + + ++++ A + Sbjct: 170 DEITDEGPVLRRKKQTKKGQKQTYHDAVIVPWENIGHANV 209 >gi|163839409|ref|YP_001623814.1| putative cytoplasmic protein [Renibacterium salmoninarum ATCC 33209] gi|162952885|gb|ABY22400.1| hypothetical cytosolic protein [Renibacterium salmoninarum ATCC 33209] Length = 149 Score = 79.0 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 10/123 (8%) Query: 55 IFVERDD---GNMTLRDCEELSQAISPILDVENIIEG--HYRLEVSSPGIDRPMVRKSDF 109 + V+ + G++ L E+S A+S LD + + + LEVSSPG+ R + + Sbjct: 3 VVVDLPEDQQGSVGLDKIAEVSLALSSALDA-DPEDDGRPFDLEVSSPGVGRSLTELRHW 61 Query: 110 LRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIA---ISFDS 166 R G + ++ S + L G+I+ S G + E +K M Q I F Sbjct: 62 RRALGRMATLKLRKSEQG-ESLFGRIIEVSPDGVKIRPELPVKKGMKPKQAEPEFIEFAQ 120 Query: 167 LLS 169 + Sbjct: 121 IRK 123 >gi|153809149|ref|ZP_01961817.1| hypothetical protein BACCAC_03459 [Bacteroides caccae ATCC 43185] gi|149128125|gb|EDM19345.1| hypothetical protein BACCAC_03459 [Bacteroides caccae ATCC 43185] Length = 155 Score = 79.0 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 67/157 (42%), Gaps = 16/157 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + +++ +E + V++++ + ++++ ++ +G + + DC ELS+ I L+ E Sbjct: 7 VCQIVEEWLEGKDYFLVEVTVSPDDKIVVE--IDHAEG-VWIEDCVELSRYIESKLNRE- 62 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 E Y LEV S GI +P + G V QKL G + E F Sbjct: 63 --EEDYELEVGSAGIGQPFKVLQQYYIHIGQEVEVMTK----GGQKLTGILKDADEEKFT 116 Query: 145 LEKEKR------GEKDMNELQIAISFDSLLSARLIVT 175 + +K+ + E +++ + + +++ Sbjct: 117 VTVQKKVKLEGSKRPKLVEEDETFTYEQIKYTKYLIS 153 >gi|124026597|ref|YP_001015712.1| hypothetical protein NATL1_18921 [Prochlorococcus marinus str. NATL1A] gi|123961665|gb|ABM76448.1| DUF150 [Prochlorococcus marinus str. NATL1A] Length = 183 Score = 79.0 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 61/154 (39%), Gaps = 11/154 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVE--RDDGNMTLRDCEELSQAISP 78 ++ + F + N L +Q+ + D +T+ DC LSQ I Sbjct: 33 VSELKDLTAKSATNYGFDVTDFKMFTHLNPLSIQVNIRHKNPDKKVTIDDCSILSQYIDE 92 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 + +I++ + LE+SS GI + + DF + G V +Q+ G ++ Sbjct: 93 AIQGSSILDQPFNLEISSEGISDFLTEEKDFQTFKGFPVEVSYQDLKKIEQQTNGLLLKR 152 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ + ++ + ++ I + ++ RL Sbjct: 153 TDNELQINQKGKTQR--------IPVEDVIQVRL 178 >gi|169630218|ref|YP_001703867.1| hypothetical protein MAB_3136c [Mycobacterium abscessus ATCC 19977] gi|259585791|sp|B1MD92|RIMP_MYCA9 RecName: Full=Ribosome maturation factor rimP gi|169242185|emb|CAM63213.1| Conserved hypothetical protein [Mycobacterium abscessus] Length = 189 Score = 78.6 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 63/153 (41%), Gaps = 10/153 (6%) Query: 22 AGDISSVIQPVIEEMSFRSVQISL----LEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + ++ P + + + + + + V+ D + L LS+ S Sbjct: 17 DDQVLELLAPEFSRSGVEIESVVVSDGGVAGRPSRIAVVVDSDT-PVDLDAVAGLSRTAS 75 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LD + Y LE+++PG+DRP+ + F R + + + + + L+G+I Sbjct: 76 ALLDEADTGWQAYELEITTPGVDRPLTTVAHFRRAHLRLAQIRLT----NGEDLLGRIGI 131 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 T + G + K + ++ ++F + SA Sbjct: 132 THDDGVQVVLRKPIKGTGWTVR-DLAFSDIESA 163 >gi|319953581|ref|YP_004164848.1| ribosome maturation factor rimp [Cellulophaga algicola DSM 14237] gi|319422241|gb|ADV49350.1| Ribosome maturation factor rimP [Cellulophaga algicola DSM 14237] Length = 153 Score = 78.6 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 67/158 (42%), Gaps = 16/158 (10%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 + +++ ++E I + I ++ D G + L+DC +++AI LD Sbjct: 4 EKVLELLEGALKENE-SIFLIDFTIGPANKISITLDGDTG-VNLKDCIAINRAIESNLDR 61 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E E + LEV+S G PMV + + G + + + K G + ++ G Sbjct: 62 E---EEDFSLEVASVGATTPMVMPRQYKKNIGRELEVKTL-----GGKFEGILTEANDQG 113 Query: 143 FFLEKEKRGEKDMNELQIAIS------FDSLLSARLIV 174 LE + R K + + ++ + F + A++I+ Sbjct: 114 ITLEWKAREPKPIGKGKVTVQKKQEFIFSDIQEAKVII 151 >gi|126663077|ref|ZP_01734075.1| hypothetical protein FBBAL38_06985 [Flavobacteria bacterium BAL38] gi|126624735|gb|EAZ95425.1| hypothetical protein FBBAL38_06985 [Flavobacteria bacterium BAL38] Length = 155 Score = 78.6 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 74/164 (45%), Gaps = 17/164 (10%) Query: 19 MGLAGDISSVI-QPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M + V+ + E + +S+ E + + ++ D G + L+DC ++S+A+ Sbjct: 1 MTFKNKVQEVLDAALAEREQLFLIDLSINEANK--ISVILDGDSG-VNLQDCIDISRAVE 57 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD E E + LEV+S G+ P+ + + G + + + +++ K+ Sbjct: 58 NNLDRE---EQDFSLEVASAGVSSPLKLVRQYKKNIGRTIKVKTISL----EEIEAKLTM 110 Query: 138 TSETGFFLEKEKR------GEKDMNELQIAISFDSLLSARLIVT 175 + LE + R K+ + ++ +S++++ A +I++ Sbjct: 111 ADDEKITLEWQDREPKKIGKGKETVDKKLQLSYENIKEAIVIIS 154 >gi|86131974|ref|ZP_01050570.1| conserved hypothetical protein [Dokdonia donghaensis MED134] gi|85817308|gb|EAQ38488.1| conserved hypothetical protein [Dokdonia donghaensis MED134] Length = 154 Score = 78.6 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 74/160 (46%), Gaps = 15/160 (9%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L +++++Q ++E ISL + N ++I ++ DDG + + DC +S+ + L Sbjct: 2 LKEKVTNLLQEALDENP-NLFLISLDIQGNNEIKIIIDGDDG-VKVEDCIAVSRKVEHNL 59 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D E E + LEV S G P+ + + G + + D K+ G + ++ Sbjct: 60 DRE---EEDFSLEVMSAGATSPLAIPRQYKKNVGRHLEVK----KEDGTKIEGLMTDATD 112 Query: 141 TGFFLEKEKRGEKDMNELQI------AISFDSLLSARLIV 174 T L + R K + + ++ IS+ ++ A++++ Sbjct: 113 TDVTLTWKTREPKPVGKGKVTVQKTETISYSEIVQAKVMI 152 >gi|315225518|ref|ZP_07867328.1| conserved hypothetical protein [Capnocytophaga ochracea F0287] gi|314944462|gb|EFS96501.1| conserved hypothetical protein [Capnocytophaga ochracea F0287] Length = 155 Score = 78.2 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 65/162 (40%), Gaps = 15/162 (9%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 M + ++ + E L + +++ ++ D G + + DC EL++AI Sbjct: 1 MNFKDQVKELVNKALSEHP-ELFLTDLSVGADNTIRVTIDGDKG-VGIDDCIELNRAIEN 58 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LD E + LEV+S G P V + + + G V + D + G + G Sbjct: 59 SLDRE---AMDFALEVTSFGATEPFVMERQYAKNAGRTVQVTTL----DGKTHEGVLKGI 111 Query: 139 SETGFFLEKEKRGEKDMNELQIAI------SFDSLLSARLIV 174 E LE E R K + + +I + + + ++I+ Sbjct: 112 VEGKAILETETREPKPVGKGKITVKKEHLFALTDIKETKVII 153 >gi|91207995|sp|Q46J16|RIMP_PROMT RecName: Full=Ribosome maturation factor rimP Length = 156 Score = 78.2 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 62/155 (40%), Gaps = 11/155 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVE--RDDGNMTLRDCEELSQAISP 78 ++ + F + N L +Q+ + D +T+ DC LSQ I Sbjct: 6 VSELKVLTAKSATNYGFDVTDFKMFTHLNPLSIQVNIRHKNPDKKVTIDDCSILSQYIDE 65 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 + +I++ + LE+SS GI + + DF + G V +Q++ G ++ Sbjct: 66 AIQGSSILDQPFNLEISSEGIGDFLTEEKDFQTFKGFPVEVSYQDLKKIEQQINGLLLKR 125 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 ++ + ++ + ++ I + ++ RL Sbjct: 126 TDNELHINQKGKTQR--------IPVEDVIQVRLA 152 >gi|298374482|ref|ZP_06984440.1| conserved hypothetical protein [Bacteroides sp. 3_1_19] gi|298268850|gb|EFI10505.1| conserved hypothetical protein [Bacteroides sp. 3_1_19] Length = 157 Score = 78.2 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 68/152 (44%), Gaps = 20/152 (13%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD--V 82 +S +I+ + S V + + L+ + ++ D+ +++ DC ELS+ + LD V Sbjct: 9 VSQLIEEKLASSSNYLVDVVIKPGN--LIVVEIDNDE-AVSIDDCAELSRYLEEHLDRDV 65 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ Y LEV S GI P +++ G+ V + + KL G + E G Sbjct: 66 ED-----YELEVGSAGITSPFKVLRQYVKNIGNEVEMLLK----NGSKLTGVLKSADENG 116 Query: 143 FFLEKEKRGEKDMNELQIAI------SFDSLL 168 + EK+ + + + ++ + +FD + Sbjct: 117 VVVSVEKKVKPEGAKRKVTVVEDESYTFDEIK 148 >gi|255692952|ref|ZP_05416627.1| conserved hypothetical protein [Bacteroides finegoldii DSM 17565] gi|260621263|gb|EEX44134.1| conserved hypothetical protein [Bacteroides finegoldii DSM 17565] Length = 155 Score = 78.2 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 66/157 (42%), Gaps = 16/157 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + +++ +E + V++++ + ++++ ++ +G + + DC ELS+ I L+ E Sbjct: 7 VCQIVEEWLEGKDYFLVEVTVSPDDKIVVE--IDHAEG-VWIEDCVELSRYIESKLNRE- 62 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 E Y LEV S GI +P + G V QKL G + E F Sbjct: 63 --EEDYELEVGSAGIGQPFKVLQQYYIHIGQEVEVMTK----GGQKLTGVLKHADEEKFT 116 Query: 145 ------LEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 ++ E + E +++ + + +++ Sbjct: 117 VSVQKKVKMEGAKRPKLVEEDETFTYEQIKYTKYLIS 153 >gi|302528543|ref|ZP_07280885.1| UPF0090 protein [Streptomyces sp. AA4] gi|302437438|gb|EFL09254.1| UPF0090 protein [Streptomyces sp. AA4] Length = 175 Score = 78.2 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 68/152 (44%), Gaps = 15/152 (9%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 LA + ++ + F + + + + L+++ V+ DDG + L + E+S+ +S Sbjct: 8 LASRLEPIVAEAVTTAGFDLDSLEVQQAGRRQLVKVVVDSDDG-VGLDEVAEVSRTVSAA 66 Query: 80 LDV-ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LD E+++ Y LEV+SPG+DRP+ ++ + R +V +G++ Sbjct: 67 LDENEHVLASAYTLEVTSPGLDRPLTQRRHWRRARFRLVKIT---PVEGSA-YLGRVGHA 122 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 E + + R + + + S+ A Sbjct: 123 GEKSVRVLADGRIKD--------VHYQSVAKA 146 >gi|325954922|ref|YP_004238582.1| ribosome maturation factor rimP [Weeksella virosa DSM 16922] gi|323437540|gb|ADX68004.1| Ribosome maturation factor rimP [Weeksella virosa DSM 16922] Length = 155 Score = 78.2 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 69/160 (43%), Gaps = 17/160 (10%) Query: 22 AGDISSVIQPVIEEMS-FRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + +I IEE V + + + I + D G + + + +S+ + L Sbjct: 3 IAKVKRLIDEAIEENPTLFLVDWKVTPDNKIF--ILADGDQG-LPIEEIVRISRHVEHNL 59 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + E E + LEVSSPG+ P+ + + G ++ ++ D + L G+I+ +E Sbjct: 60 NRE---ECDFALEVSSPGLSTPLSMPRQYKKNIGRQISITLI----DGKVLEGEIVEANE 112 Query: 141 TGFFLEKEKRGEKDMNELQIAIS------FDSLLSARLIV 174 L E R K + + +I + +D++ A ++V Sbjct: 113 EAVELFWETREPKPVGKGKITVEHQEEFHYDTIQKAVIVV 152 >gi|256419697|ref|YP_003120350.1| hypothetical protein Cpin_0651 [Chitinophaga pinensis DSM 2588] gi|256034605|gb|ACU58149.1| protein of unknown function DUF150 [Chitinophaga pinensis DSM 2588] Length = 169 Score = 78.2 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 73/168 (43%), Gaps = 18/168 (10%) Query: 6 FLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMT 65 F+ ++ DM + ++ P E + V + + N+ L FV+ D+G + Sbjct: 15 FMANEQVITTIRDMA-----AEMLSPYPE---YFVVDVRIKPTNNIKL--FVDGDNG-VP 63 Query: 66 LRDCEELSQAISPILDVENIIEGH-YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS 124 + ++ + L+ + + + LEVSSPG+D P+ +++ G V + Sbjct: 64 VDKLVAFNRNLYSRLEEATLFPDNDFSLEVSSPGLDEPLKLLRQYVKNIGRKVTVTL--- 120 Query: 125 SGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + +K G ++ +E +E++ +K+ + I+ + + ++ Sbjct: 121 LDNSEK-EGTLLSATEAVVTIEEQVGKKKEKKTTE--INLNEIKHTKV 165 >gi|311113214|ref|YP_003984436.1| hypothetical protein HMPREF0733_11545 [Rothia dentocariosa ATCC 17931] gi|310944708|gb|ADP41002.1| conserved hypothetical protein [Rothia dentocariosa ATCC 17931] Length = 221 Score = 78.2 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 72/160 (45%), Gaps = 13/160 (8%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVE---RDDGNMTLRDCEELSQAIS 77 ++ I+PV+ E S +I + N ++I V+ +++L E+S AIS Sbjct: 54 EDEVGEAIKPVLSEFSLVLERIKISGPAANRTVEITVDYMEDRTDSLSLDSLAEISGAIS 113 Query: 78 PILDVENIIEG--HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + + Y LEVSSPG R + + + R +VA D + + ++ Sbjct: 114 QALDKADEHDEFFPYMLEVSSPGATRELTERRHWKRARTRLVAVT----QTDGTEYVARL 169 Query: 136 MGTSETGFFLEKEKRGEKDMNELQ---IAISFDSLLSARL 172 ++ G L ++K+ +K + + + ++++ A + Sbjct: 170 DEITDEGPVLRRKKQTKKGQKQTYHDAVIVPWENIGHANV 209 >gi|227504823|ref|ZP_03934872.1| conserved hypothetical protein [Corynebacterium striatum ATCC 6940] gi|227198673|gb|EEI78721.1| conserved hypothetical protein [Corynebacterium striatum ATCC 6940] Length = 188 Score = 78.2 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 61/157 (38%), Gaps = 17/157 (10%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 A ++ ++QP++E + + K + I ++ D + EE+S IS Sbjct: 6 AAQLTELLQPLLEPRGLDVEDVKTTKAGKKSQVIIRIDGDQRP-SSDVLEEVSNQISEFF 64 Query: 81 DVENI-----IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 D + Y LEVS+PG+D P+ + R G +VA E+ + + +I Sbjct: 65 DAKEESGELNFGAGYTLEVSTPGVDLPLTAPRHWRRNRGRLVAFELTP----GKSEVARI 120 Query: 136 MGTSET--GFFLEKEKRGEKDMNELQIAISFDSLLSA 170 S+ L + + + +++ A Sbjct: 121 GALSDDASSVALITTVKKDVYFRIER----LENIARA 153 >gi|86742246|ref|YP_482646.1| hypothetical protein Francci3_3565 [Frankia sp. CcI3] gi|123750811|sp|Q2J725|RIMP_FRASC RecName: Full=Ribosome maturation factor rimP gi|86569108|gb|ABD12917.1| protein of unknown function DUF150 [Frankia sp. CcI3] Length = 268 Score = 78.2 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 63/162 (38%), Gaps = 12/162 (7%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAI 76 G G+ + + + + + F +++ + + V DG + L + S+ Sbjct: 38 GRGGVRTALRARLAAGLADAGFDLEDVTVTRAGSRSVVRVVVDRDGGVDLDAVADASRLA 97 Query: 77 SPILDVEN-----IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 S +LD ++ G Y LEV+SPG++RP+ + R G +V L Sbjct: 98 SELLDAAETDGQGLVAGPYVLEVTSPGVERPLTEPRHWRRAIGRLVTVRDRDGI----VL 153 Query: 132 IGKIMGTSETGFFL---EKEKRGEKDMNELQIAISFDSLLSA 170 G+++ E+G L R + ++F + A Sbjct: 154 AGRVLSADESGADLAVATDPARPGRPPRRRLARVTFAQVARA 195 >gi|116328715|ref|YP_798435.1| hypothetical protein LBL_2089 [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330627|ref|YP_800345.1| hypothetical protein LBJ_0944 [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122281618|sp|Q04U33|RIMP_LEPBJ RecName: Full=Ribosome maturation factor rimP gi|122283500|sp|Q04ZJ3|RIMP_LEPBL RecName: Full=Ribosome maturation factor rimP gi|116121459|gb|ABJ79502.1| Conserved hypothetical protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124316|gb|ABJ75587.1| Conserved hypothetical protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 162 Score = 77.8 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 4/121 (3%) Query: 57 VERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHV 116 +E G+++L +CE++S+ + L+ + + L+VSS G +R + D R+ G Sbjct: 43 LEHPYGSVSLLECEQVSRKLKEELERISPDLD-FTLKVSSAGAERKLHLPEDIDRFRGIP 101 Query: 117 VACEIVLSSGDKQKLIG--KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 V + S ++ G +I+ FLEK ++G+K + Q ++ +L L V Sbjct: 102 VRL-VFRSGESEKNQEGIFRIVNRDGDQVFLEKFQKGKKSAVKKQTTLNLKDILKGNLYV 160 Query: 175 T 175 + Sbjct: 161 S 161 >gi|262382601|ref|ZP_06075738.1| UPF0090 protein [Bacteroides sp. 2_1_33B] gi|262295479|gb|EEY83410.1| UPF0090 protein [Bacteroides sp. 2_1_33B] Length = 157 Score = 77.8 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 68/152 (44%), Gaps = 20/152 (13%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD--V 82 +S +++ + S V + + L+ + ++ D+ +++ DC ELS+ + LD V Sbjct: 9 VSQLVEEKLASSSNYLVDVVIKPGN--LIVVEIDNDE-AVSIDDCAELSRYLEEHLDRDV 65 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ Y LEV S GI P +++ G+ V + + KL G + E G Sbjct: 66 ED-----YELEVGSAGITSPFKVLRQYVKNIGNEVEMLLK----NGSKLTGVLKSADENG 116 Query: 143 FFLEKEKRGEKDMNELQIAI------SFDSLL 168 + EK+ + + + ++ + +FD + Sbjct: 117 VVVSVEKKVKPEGAKRKVTVIEDESYTFDEIK 148 >gi|259586223|sp|A2C4N8|RIMP_PROM1 RecName: Full=Ribosome maturation factor rimP Length = 156 Score = 77.8 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 61/154 (39%), Gaps = 11/154 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVE--RDDGNMTLRDCEELSQAISP 78 ++ + F + N L +Q+ + D +T+ DC LSQ I Sbjct: 6 VSELKDLTAKSATNYGFDVTDFKMFTHLNPLSIQVNIRHKNPDKKVTIDDCSILSQYIDE 65 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 + +I++ + LE+SS GI + + DF + G V +Q+ G ++ Sbjct: 66 AIQGSSILDQPFNLEISSEGISDFLTEEKDFQTFKGFPVEVSYQDLKKIEQQTNGLLLKR 125 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ + ++ + ++ I + ++ RL Sbjct: 126 TDNELQINQKGKTQR--------IPVEDVIQVRL 151 >gi|160883930|ref|ZP_02064933.1| hypothetical protein BACOVA_01904 [Bacteroides ovatus ATCC 8483] gi|237720418|ref|ZP_04550899.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|260172454|ref|ZP_05758866.1| hypothetical protein BacD2_11366 [Bacteroides sp. D2] gi|293370439|ref|ZP_06616992.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f] gi|299147095|ref|ZP_07040162.1| conserved hypothetical protein [Bacteroides sp. 3_1_23] gi|315920748|ref|ZP_07916988.1| conserved hypothetical protein [Bacteroides sp. D2] gi|156110660|gb|EDO12405.1| hypothetical protein BACOVA_01904 [Bacteroides ovatus ATCC 8483] gi|229450169|gb|EEO55960.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|292634431|gb|EFF52967.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f] gi|298514980|gb|EFI38862.1| conserved hypothetical protein [Bacteroides sp. 3_1_23] gi|313694623|gb|EFS31458.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 155 Score = 77.4 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 68/157 (43%), Gaps = 16/157 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + +++ +E + V++++ + ++++ ++ +G + + DC ELS+ I L+ E Sbjct: 7 VCQIVEEWLEGKDYFLVEVTVSPDDKIVVE--IDHAEG-VWIEDCVELSRFIESKLNRE- 62 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 E Y LEV S GI +P + G V GD +KL G + E F Sbjct: 63 --EEDYELEVGSAGIGQPFKVLQQYYIHIGQEVEVLT----GDGRKLAGILKDADEEKFT 116 Query: 145 ------LEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 ++ E + E +++ + + +++ Sbjct: 117 VGVQKKVKTEGSKRPKLVEEDETFTYEQIKYTKYLIS 153 >gi|45658542|ref|YP_002628.1| hypothetical protein LIC12707 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|34222882|sp|Q8F7K3|RIMP_LEPIN RecName: Full=Ribosome maturation factor rimP gi|51316950|sp|Q72NX1|RIMP_LEPIC RecName: Full=Ribosome maturation factor rimP gi|45601785|gb|AAS71265.1| conserved hypothetical protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 162 Score = 77.4 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 77/159 (48%), Gaps = 9/159 (5%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVER---DDGNMTLRDCEELSQAIS 77 + +IS ++ V+ + + + + + N L+++ ++ G+++L +CE++S+ + Sbjct: 5 SEEISGILDGVL-SLPVKLYSLKVNQRPNHSLIEVVLDNLEHPYGSVSLLECEQVSRKLK 63 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG--KI 135 L+ + Y L+VSS G +R + D R+ G + + S +++ G ++ Sbjct: 64 EELERISPDLD-YTLKVSSAGAERKLNLPGDLDRFRGIPIRL-VFRSEESEKEQEGIFRV 121 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + LEK ++G+K + + Q ++ +L L V Sbjct: 122 VNRDGDQIVLEKFQKGKKSVVKKQTTLNLKDILKGNLYV 160 >gi|298387891|ref|ZP_06997440.1| conserved hypothetical protein [Bacteroides sp. 1_1_14] gi|298259298|gb|EFI02173.1| conserved hypothetical protein [Bacteroides sp. 1_1_14] Length = 155 Score = 77.4 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 64/142 (45%), Gaps = 10/142 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + +++ +E + V++++ + ++++ ++ +G + + DC ELS+ I L+ E Sbjct: 7 VCQIVEEWLEGKDYFLVEVTVSPDDKIVVE--IDHAEG-VWIEDCVELSRFIESKLNRE- 62 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 E Y LEV S GI +P + G V D +KL G + E F Sbjct: 63 --EEDYELEVGSAGIGQPFKVLQQYYIHIGQEVEVVTR----DGRKLAGILKDADEEKFT 116 Query: 145 LEKEKRGEKDMNELQIAISFDS 166 + EK+ + + ++ I D Sbjct: 117 VGVEKKVKLEGSKRPKLIEEDE 138 >gi|193213434|ref|YP_001999387.1| hypothetical protein Cpar_1795 [Chlorobaculum parvum NCIB 8327] gi|259585748|sp|B3QQI4|RIMP_CHLP8 RecName: Full=Ribosome maturation factor rimP gi|193086911|gb|ACF12187.1| protein of unknown function DUF150 [Chlorobaculum parvum NCIB 8327] Length = 170 Score = 77.0 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 67/157 (42%), Gaps = 12/157 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD-- 81 I I V + + ++++ +E D G +++ C +LS+ I L+ Sbjct: 9 IDESIAEVAVATGSDIYLVEADVRGGGRIIELTIEADKG-VSIDQCAKLSRTIRARLEAC 67 Query: 82 VENII--EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT- 138 EN++ G + L VSSPGI P+ +LR G + + S G+++++ GK+ Sbjct: 68 EENLMLAAGDFELMVSSPGIGEPIRVSRQYLRHLGRKMKVVYLDSEGERKEIEGKLTEAS 127 Query: 139 ---SETGFFLE--KEKRGEKDMNELQIAISFDSLLSA 170 E +E + + +K + + ++ A Sbjct: 128 LEGEEPSITIEPVVKGKKKKTSGREPLTLRLADVVKA 164 >gi|150010112|ref|YP_001304855.1| hypothetical protein BDI_3532 [Parabacteroides distasonis ATCC 8503] gi|255012628|ref|ZP_05284754.1| hypothetical protein B2_01880 [Bacteroides sp. 2_1_7] gi|166990853|sp|A6LHR9|RIMP_PARD8 RecName: Full=Ribosome maturation factor rimP gi|149938536|gb|ABR45233.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503] Length = 155 Score = 77.0 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 68/152 (44%), Gaps = 20/152 (13%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD--V 82 +S +I+ + S V + + L+ + ++ D+ +++ DC ELS+ + LD V Sbjct: 7 VSQLIEEKLASSSNYLVDVVIKPGN--LIVVEIDNDE-AVSIDDCAELSRYLEEHLDRDV 63 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ Y LEV S GI P +++ G+ V + + KL G + E G Sbjct: 64 ED-----YELEVGSAGITSPFKVLRQYVKNIGNEVEMLLK----NGSKLTGVLKSADENG 114 Query: 143 FFLEKEKRGEKDMNELQIAI------SFDSLL 168 + EK+ + + + ++ + +FD + Sbjct: 115 VVVSVEKKVKPEGAKRKVTVVEDESYTFDEIK 146 >gi|289705160|ref|ZP_06501563.1| conserved hypothetical protein [Micrococcus luteus SK58] gi|289558104|gb|EFD51392.1| conserved hypothetical protein [Micrococcus luteus SK58] Length = 195 Score = 77.0 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 64/161 (39%), Gaps = 16/161 (9%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEE----KNLLLQIFVERDDG--NMTLRDCEELSQAI 76 D++ + V E ++ V + + ++ +++ ++R G ++L D LS + Sbjct: 8 DDLAELRTRVEEALAADDVVVEQVRATGTAEHRTVEVVLDRASGTQGLSLDDVARLSGRV 67 Query: 77 SPILD-----VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 S LD V + G Y LEV++ G+DRP+ F R G +V + Sbjct: 68 SAALDALGDHVPGVGAGEYLLEVTTAGVDRPLTEPRHFARNVGRLVEVS----VDGAAPV 123 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ + L + K + + + + + RL Sbjct: 124 TARLKDVTADDVELAVVRPPAKKGMKAK-ELPAERVALDRL 163 >gi|282879393|ref|ZP_06288136.1| conserved hypothetical protein [Prevotella buccalis ATCC 35310] gi|281298506|gb|EFA90932.1| conserved hypothetical protein [Prevotella buccalis ATCC 35310] Length = 155 Score = 77.0 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 61/150 (40%), Gaps = 16/150 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + +++ +++ + V + + ++ ++++ ++ DG + + DC ELS+ I + Sbjct: 7 VKGLVEDWLQDKDYFLVDVEVSKDDKIVVE--IDHADG-VWIEDCVELSRYIED---RLD 60 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 + Y LEV S G+ +P ++ + G V GD K G + F Sbjct: 61 RDDEDYELEVGSAGLGQPFKVPQQYINFIGKEVEV----LDGDGLKYRGVLKSVDGNDFV 116 Query: 145 ------LEKEKRGEKDMNELQIAISFDSLL 168 ++ E + ++ + D + Sbjct: 117 VTVDEKVKVEGKKRPELQAVDHTFQMDKVK 146 >gi|255010120|ref|ZP_05282246.1| hypothetical protein Bfra3_13350 [Bacteroides fragilis 3_1_12] gi|313147918|ref|ZP_07810111.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313136685|gb|EFR54045.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 155 Score = 77.0 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 68/157 (43%), Gaps = 16/157 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + +++ +E + V++++ + ++++ ++ +G + + DC ELS+ I L+ E Sbjct: 7 VCQIVEEWLEGKDYFLVEVTVSPDDKIVVE--IDHAEG-VWIEDCVELSRFIESKLNRE- 62 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 E Y LEV S GI +P + G V +KL G + E F Sbjct: 63 --EEDYELEVGSAGIGQPFKVLQQYYNHIGLEVEVLTK----GGRKLSGVLKDADEEKFV 116 Query: 145 LEKEKRGEKDMN------ELQIAISFDSLLSARLIVT 175 + +K+ + + E ++D + + +++ Sbjct: 117 VTVQKKVKPEGAKRPQLVEEDETFTYDDIKYTKYLIS 153 >gi|254494921|ref|ZP_01052530.2| conserved hypothetical protein [Polaribacter sp. MED152] gi|213690503|gb|EAQ41958.2| conserved hypothetical protein [Polaribacter sp. MED152] Length = 176 Score = 77.0 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 69/157 (43%), Gaps = 18/157 (11%) Query: 23 GDISSVIQPVIE-EMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 I ++ + S + +++ E +Q+ V+ D+G + L +C +S+ + LD Sbjct: 27 KKIKDLVDEALALNESLFLIDLTISENNK--IQVTVDGDNG-VPLSECIRISRNVEHNLD 83 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 E E + LEV++P I P+ K +++ ++ + ++L G ++ + Sbjct: 84 RE---EEDFSLEVTTPDISHPLKEKRQYVKNINRILKVKTAE-----EELEGTLVEADDE 135 Query: 142 GFFLEKEKRGEKDMNELQI------AISFDSLLSARL 172 L + R K + + ++ +++ + A++ Sbjct: 136 KIVLNWKAREPKPIGKGKVTVKKSATLTYTEIKEAKV 172 >gi|53711552|ref|YP_097544.1| hypothetical protein BF0261 [Bacteroides fragilis YCH46] gi|60679811|ref|YP_209955.1| hypothetical protein BF0217 [Bacteroides fragilis NCTC 9343] gi|253564387|ref|ZP_04841844.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|265764944|ref|ZP_06093219.1| UPF0090 protein [Bacteroides sp. 2_1_16] gi|81317116|sp|Q5LIN3|RIMP_BACFN RecName: Full=Ribosome maturation factor rimP gi|81383870|sp|Q64ZR6|RIMP_BACFR RecName: Full=Ribosome maturation factor rimP gi|52214417|dbj|BAD47010.1| conserved hypothetical protein [Bacteroides fragilis YCH46] gi|60491245|emb|CAH05993.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343] gi|251948163|gb|EES88445.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|263254328|gb|EEZ25762.1| UPF0090 protein [Bacteroides sp. 2_1_16] gi|301161334|emb|CBW20874.1| conserved hypothetical protein [Bacteroides fragilis 638R] Length = 155 Score = 77.0 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 69/157 (43%), Gaps = 16/157 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + +++ +E+ + V++++ + ++++ ++ +G + + DC ELS+ I L+ E Sbjct: 7 VCQIVEEWLEDKDYFLVEVTVSPDDKIVVE--IDHAEG-VWIEDCVELSRFIESKLNRE- 62 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 E Y LEV S GI +P + G V +KL G + E F Sbjct: 63 --EEDYELEVGSAGIGQPFKVLQQYYNHIGLEVEVLTK----GGRKLSGVLKDADEEKFV 116 Query: 145 LEKEKRGEKDMN------ELQIAISFDSLLSARLIVT 175 + +K+ + + E ++D + + +++ Sbjct: 117 VTVQKKVKPEGAKRPQLVEEDETFTYDDIKYTKYLIS 153 >gi|29348811|ref|NP_812314.1| hypothetical protein BT_3402 [Bacteroides thetaiotaomicron VPI-5482] gi|253568844|ref|ZP_04846254.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|34223111|sp|Q8A2A3|RIMP_BACTN RecName: Full=Ribosome maturation factor rimP gi|29340717|gb|AAO78508.1| conserved hypothetical protein [Bacteroides thetaiotaomicron VPI-5482] gi|251840863|gb|EES68944.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 155 Score = 77.0 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 67/157 (42%), Gaps = 16/157 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + +++ +E + V++++ + ++++ ++ +G + + DC ELS+ I L+ E Sbjct: 7 VCQIVEEWLEGKDYFLVEVTVSPDDKIVVE--IDHAEG-VWIEDCVELSRFIESKLNRE- 62 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 E Y LEV S GI +P + G V D +KL G + E F Sbjct: 63 --EEDYELEVGSAGIGQPFKVLQQYYIHIGQEVEVVTR----DGRKLAGILKDADEEKFT 116 Query: 145 ------LEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 ++ E + E +++ + + +++ Sbjct: 117 VGVQKKVKLEGSKRPKLIEEDETFTYEQIKYTKYLIS 153 >gi|323343774|ref|ZP_08084001.1| hypothetical protein HMPREF0663_10536 [Prevotella oralis ATCC 33269] gi|323095593|gb|EFZ38167.1| hypothetical protein HMPREF0663_10536 [Prevotella oralis ATCC 33269] Length = 155 Score = 77.0 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 60/148 (40%), Gaps = 17/148 (11%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL--DV 82 + ++ ++ + V + + + ++++ ++ DG + + DC ELS+ I L D Sbjct: 7 VKKLVDEWLQNKDYFLVGVEISPDDKIVVE--IDHADG-VWIEDCVELSKYIESYLSRDE 63 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ Y LEV S G+ +P ++ + G V D K+ G + Sbjct: 64 ED-----YELEVGSAGLGQPFKVPQQYINFIGKEVEV----LDADGVKVKGLLKSVDGNE 114 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSA 170 F + ++ + + + + + A Sbjct: 115 FVVTVREKVKVEGKKRPV---LQDVDHA 139 >gi|240146077|ref|ZP_04744678.1| conserved hypothetical protein [Roseburia intestinalis L1-82] gi|257201822|gb|EEV00107.1| conserved hypothetical protein [Roseburia intestinalis L1-82] Length = 76 Score = 76.6 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 32/69 (46%) Query: 94 VSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEK 153 VSSPG+ RP+ ++ D++R G V + +++ G + E ++ E E Sbjct: 1 VSSPGLGRPLKKEKDYIRSMGKEVEIRTYRAINREKEFYGILSAYDENTVTIKTEDGTEM 60 Query: 154 DMNELQIAI 162 + IA+ Sbjct: 61 TFEKSDIAL 69 >gi|256838935|ref|ZP_05544445.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|301308162|ref|ZP_07214116.1| conserved hypothetical protein [Bacteroides sp. 20_3] gi|256739854|gb|EEU53178.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|300833632|gb|EFK64248.1| conserved hypothetical protein [Bacteroides sp. 20_3] Length = 155 Score = 76.6 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 68/152 (44%), Gaps = 20/152 (13%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD--V 82 +S +++ + S V + + L+ + ++ D+ +++ DC ELS+ + LD V Sbjct: 7 VSQLVEEKLASSSNYLVDVVIKPGN--LIVVEIDNDE-AVSIDDCAELSRYLEEHLDRDV 63 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ Y LEV S GI P +++ G+ V + + KL G + E G Sbjct: 64 ED-----YELEVGSAGITSPFKVLRQYVKNIGNEVEMLLK----NGSKLTGVLKSADENG 114 Query: 143 FFLEKEKRGEKDMNELQIAI------SFDSLL 168 + EK+ + + + ++ + +FD + Sbjct: 115 VVVSVEKKVKPEGAKRKVTVIEDESYTFDEIK 146 >gi|218131823|ref|ZP_03460627.1| hypothetical protein BACEGG_03444 [Bacteroides eggerthii DSM 20697] gi|317474561|ref|ZP_07933835.1| hypothetical protein HMPREF1016_00814 [Bacteroides eggerthii 1_2_48FAA] gi|217986126|gb|EEC52465.1| hypothetical protein BACEGG_03444 [Bacteroides eggerthii DSM 20697] gi|316909242|gb|EFV30922.1| hypothetical protein HMPREF1016_00814 [Bacteroides eggerthii 1_2_48FAA] Length = 155 Score = 76.6 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 70/157 (44%), Gaps = 16/157 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + ++ +E+ + V++ + + ++++ ++ +G + + DC ELS+ I L+ E+ Sbjct: 7 VCQIVDEWLEDKDYFLVEVIISPDDKIVVE--IDHKEG-VWIEDCVELSRYIESRLNRED 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S GI +P ++ G V + D +K G + G E F Sbjct: 64 ---EDYELEVGSAGIGQPFKVLQQYVNHIGKEVEV----LAKDGRKHCGILKGADEQQFT 116 Query: 145 LEKEKR------GEKDMNELQIAISFDSLLSARLIVT 175 + +K+ M + + +++ + + +++ Sbjct: 117 VTVQKKVKEEGAKRPKMVDEDLTFTYEEIKYTKYLIS 153 >gi|86140763|ref|ZP_01059322.1| hypothetical protein MED217_16465 [Leeuwenhoekiella blandensis MED217] gi|85832705|gb|EAQ51154.1| hypothetical protein MED217_16465 [Leeuwenhoekiella blandensis MED217] Length = 154 Score = 76.6 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 72/159 (45%), Gaps = 17/159 (10%) Query: 21 LAGDISSVIQPVIEEM-SFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L +++++ +E S + + + ++ + ++ D+G ++++DC +S+ + Sbjct: 2 LKEKVAALLDEAFKEYPSLYLIDLKIKGNNEIV--VIIDGDEG-VSVQDCINVSRKVEHN 58 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD E E + LEV S G P+V K + + G + + D K+ G ++ Sbjct: 59 LDRE---EEDFSLEVMSAGATEPLVNKRQYKKNEGRDLEVIL----QDGAKIKGNLIQVH 111 Query: 140 ETGFFL------EKEKRGEKDMNELQIAISFDSLLSARL 172 + G L KE K E + I++D++ A++ Sbjct: 112 DEGIVLFWKERVPKEVGKGKMTVEKEEVIAYDAIKQAKV 150 >gi|189465080|ref|ZP_03013865.1| hypothetical protein BACINT_01424 [Bacteroides intestinalis DSM 17393] gi|189437354|gb|EDV06339.1| hypothetical protein BACINT_01424 [Bacteroides intestinalis DSM 17393] Length = 155 Score = 76.3 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 70/157 (44%), Gaps = 16/157 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + ++ +E + V++++ + ++++ ++ +G + + DC ELS+ I L+ E+ Sbjct: 7 VCQIVDEWLEGKEYFLVEVTISPDDKIVVE--IDHKEG-VWIEDCVELSRYIESKLNRED 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S GI +P ++ G V D +KL G + E F Sbjct: 64 ---EDYELEVGSAGIGQPFKVLQQYINHIGKEVEV----LRKDGRKLCGVLKTADEQHFT 116 Query: 145 LEKEKRGEKDMN------ELQIAISFDSLLSARLIVT 175 + EK+ + + E +++D + + +++ Sbjct: 117 VTVEKKVKPEGAKRPTLVEEDETLAYDEIKYTKYLIS 153 >gi|84498574|ref|ZP_00997337.1| hypothetical protein JNB_20318 [Janibacter sp. HTCC2649] gi|84381107|gb|EAP96992.1| hypothetical protein JNB_20318 [Janibacter sp. HTCC2649] Length = 187 Score = 76.3 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 7/109 (6%) Query: 63 NMTLRDCEELSQAISPILDVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 +++L + + +S LD +++ E Y LEV+SPG+ RP+ S F R G +V Sbjct: 56 SLSLDEIASATHTVSDALDESDVLGEQPYTLEVTSPGVSRPLTAASHFRRNVGRLVVLTP 115 Query: 122 VLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 D + + G+I+ + L K E ++ ++ A Sbjct: 116 ----QDGEPVTGRIVRAGDDDLTLLV--PAVKKAPERDEIFAYAAIDRA 158 >gi|294827764|ref|NP_711122.2| hypothetical protein LA_0941 [Leptospira interrogans serovar Lai str. 56601] gi|293385607|gb|AAN48140.2| conserved hypothetical protein [Leptospira interrogans serovar Lai str. 56601] Length = 123 Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 59/120 (49%), Gaps = 4/120 (3%) Query: 57 VERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHV 116 +E G+++L +CE++S+ + L+ + Y L+VSS G +R + D R+ G Sbjct: 4 LEHPYGSVSLLECEQVSRKLKEELERISPDLD-YTLKVSSAGAERKLNLPGDLDRFRGIP 62 Query: 117 VACEIVLSSGDKQKLIG--KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + S +++ G +++ LEK ++G+K + + Q ++ +L L V Sbjct: 63 IRL-VFRSEESEKEQEGIFRVVNRDGDQIVLEKFQKGKKSVVKKQTTLNLKDILKGNLYV 121 >gi|227503406|ref|ZP_03933455.1| conserved hypothetical protein [Corynebacterium accolens ATCC 49725] gi|227075909|gb|EEI13872.1| conserved hypothetical protein [Corynebacterium accolens ATCC 49725] Length = 179 Score = 75.9 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 58/157 (36%), Gaps = 17/157 (10%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 A ++ ++QP + I + K + I ++ D + EE+S IS Sbjct: 6 AQQLTDLLQPRLAARGLDVEDIKTTKAGKKSQVIIRIDGDKRP-SSDVLEEVSDDISAFF 64 Query: 81 DVENIIEG-----HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 D + Y LEVS+PG+D P+ + R G V GD + +I Sbjct: 65 DEKEETGELNFGAGYTLEVSTPGVDLPLTSPRHWRRNQGRKVTFN----RGDDKSHTARI 120 Query: 136 --MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 + +E L ++ E + +++ A Sbjct: 121 GALNAAEDAVVLITSEKNEVHTEVER----LENIAHA 153 >gi|288800575|ref|ZP_06406033.1| conserved hypothetical protein [Prevotella sp. oral taxon 299 str. F0039] gi|288332788|gb|EFC71268.1| conserved hypothetical protein [Prevotella sp. oral taxon 299 str. F0039] Length = 155 Score = 75.9 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 53/121 (43%), Gaps = 14/121 (11%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL--DV 82 + +++ +++ + V I + + ++++ ++ +G + + DC LS+ I + D Sbjct: 7 VKQLVEQWLQDKDYFLVGIEVSNDDRVVVE--IDHSEG-VWIEDCVALSKFIEDHMSKDE 63 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 + Y LEV S G+ +P ++ + G V D +K+ G + T Sbjct: 64 VD-----YELEVGSAGLGQPFKVPQQYINFIGKEVEV----LDADGRKVKGLLKSVEGTA 114 Query: 143 F 143 F Sbjct: 115 F 115 >gi|255325208|ref|ZP_05366314.1| conserved hypothetical protein [Corynebacterium tuberculostearicum SK141] gi|311739682|ref|ZP_07713517.1| conserved hypothetical protein [Corynebacterium pseudogenitalium ATCC 33035] gi|255297773|gb|EET77084.1| conserved hypothetical protein [Corynebacterium tuberculostearicum SK141] gi|311305498|gb|EFQ81566.1| conserved hypothetical protein [Corynebacterium pseudogenitalium ATCC 33035] Length = 179 Score = 75.9 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 60/157 (38%), Gaps = 17/157 (10%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 A ++ ++QP + E I + K + I ++ D + EE+S IS Sbjct: 6 AQQLTDLLQPKLAERGLDVEDIKTTKAGKKSQVIIRIDGDKRP-SSDVLEEVSNEISAFF 64 Query: 81 DVENI-----IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 D + Y LEVS+PG+D P+ + R G V+ ++ GD + +I Sbjct: 65 DDKEAQGELNFGAGYTLEVSTPGVDLPLTAPRHWRRNRGRKVSFDL----GDGKTQSARI 120 Query: 136 MGTSE--TGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 ++ L + + + +++ A Sbjct: 121 GALNDAADAVILITASKKDVQARAER----LENIARA 153 >gi|298480546|ref|ZP_06998743.1| conserved hypothetical protein [Bacteroides sp. D22] gi|298273367|gb|EFI14931.1| conserved hypothetical protein [Bacteroides sp. D22] Length = 155 Score = 75.9 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 66/157 (42%), Gaps = 16/157 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + ++ +E + V++++ + ++++ ++ +G + + DC ELS+ I L+ E Sbjct: 7 VCQIVDEWLEGKDYFLVEVTVSPDDKIVVE--IDHAEG-VWIEDCVELSRYIESKLNRE- 62 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 E Y LEV S GI +P + G V D +KL G + E F Sbjct: 63 --EEDYELEVGSAGIGQPFKVLQQYYIHIGQEVEVLTK----DGRKLAGILKDADEEKFT 116 Query: 145 ------LEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 ++ E + E +++ + + +++ Sbjct: 117 VAVQKKVKLEGAKRPKLQEEDETFTYEQIKYTKYLIS 153 >gi|330997780|ref|ZP_08321615.1| hypothetical protein HMPREF9442_02717 [Paraprevotella xylaniphila YIT 11841] gi|329569668|gb|EGG51433.1| hypothetical protein HMPREF9442_02717 [Paraprevotella xylaniphila YIT 11841] Length = 155 Score = 75.9 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 61/150 (40%), Gaps = 16/150 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + +++ +E + V +++ + ++++ ++ +G + + DC ELS+ I L E Sbjct: 7 VRGLVEEWLEGRDYFLVDVAVSADDRIVVE--IDHAEG-VWIEDCVELSRFIESRLSRE- 62 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 E Y LEV S GI +P ++ G V D +KL G + F Sbjct: 63 --EEDYELEVGSAGIGQPFKVLQQYVNHVGSEVDV----LMADGRKLHGVLTAAGPESFE 116 Query: 145 L------EKEKRGEKDMNELQIAISFDSLL 168 + + E E + + +D + Sbjct: 117 VTVKVKRKLEGEKRPKWVEETVTLRYDEIK 146 >gi|237716686|ref|ZP_04547167.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262405462|ref|ZP_06082012.1| UPF0090 protein [Bacteroides sp. 2_1_22] gi|294646241|ref|ZP_06723895.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a] gi|294809091|ref|ZP_06767809.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b] gi|229442669|gb|EEO48460.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262356337|gb|EEZ05427.1| UPF0090 protein [Bacteroides sp. 2_1_22] gi|292638459|gb|EFF56823.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a] gi|294443645|gb|EFG12394.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b] Length = 155 Score = 75.9 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 66/157 (42%), Gaps = 16/157 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + ++ +E + V++++ + ++++ ++ +G + + DC ELS+ I L+ E Sbjct: 7 VCQIVDEWLEGKDYFLVEVTVSPDDKIVVE--IDHAEG-VWIEDCVELSRYIESKLNRE- 62 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 E Y LEV S GI +P + G V D +KL G + E F Sbjct: 63 --EEDYELEVGSAGIGQPFKVLQQYYIHIGQEVEVLTK----DGRKLAGILKDADEEKFT 116 Query: 145 ------LEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 ++ E + E +++ + + +++ Sbjct: 117 VAVQKKVKLEGSKRPKLQEEDETFTYEQIKYTKYLIS 153 >gi|157414093|ref|YP_001484959.1| hypothetical protein P9215_17601 [Prochlorococcus marinus str. MIT 9215] gi|166980224|sp|A8G6Z2|RIMP_PROM2 RecName: Full=Ribosome maturation factor rimP gi|157388668|gb|ABV51373.1| DUF150 [Prochlorococcus marinus str. MIT 9215] Length = 155 Score = 75.9 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 68/148 (45%), Gaps = 2/148 (1%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGN-MTLRDCEELSQAISPILD 81 + +++ V E + I++ +N +++I +++ +G+ ++L DC + S ++ Sbjct: 8 KLEILLKKVANEWDLKICSINIQTNQNPTVVKIIIKKTNGDDISLEDCALFNAPASEEIE 67 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 N++ Y LE+SS G+ + DF + G V ++ + K+ L G + S Sbjct: 68 NSNLLNCSYVLEISSQGVSDELTSDRDFKTFKGFPVNVQLNQKNSKKKFLNGLLYEKSND 127 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLS 169 + + + +K + + IS +L Sbjct: 128 YLAINIKGKIKKIPFDEVLKISLCTLKD 155 >gi|239917226|ref|YP_002956784.1| hypothetical protein Mlut_06980 [Micrococcus luteus NCTC 2665] gi|281414300|ref|ZP_06246042.1| hypothetical protein MlutN2_03688 [Micrococcus luteus NCTC 2665] gi|239838433|gb|ACS30230.1| uncharacterized conserved protein [Micrococcus luteus NCTC 2665] Length = 195 Score = 75.5 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 66/179 (36%), Gaps = 23/179 (12%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 M+ST E R + LA D V+ + ++ +++ ++R Sbjct: 1 MDSTDRRDDHAELRTRVEEALAAD--DVVVEQVRATG---------TAEHRTVEVVLDRA 49 Query: 61 DG--NMTLRDCEELSQAISPILD-----VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWN 113 G ++L D LS +S LD V + G Y LEV++ G+DRP+ R Sbjct: 50 SGTYGLSLDDVARLSGRVSAALDALGDHVPGVGAGEYLLEVTTAGVDRPLTEPRHLARNV 109 Query: 114 GHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G +V + ++ ++ L + K ++ + + + RL Sbjct: 110 GRLVEVS----VDGAAPVTARLKDVTDDDVELAVVRPPAKKGMRVK-ELPAERVALDRL 163 >gi|315023859|gb|EFT36861.1| hypothetical protein RAYM_00555 [Riemerella anatipestifer RA-YM] gi|325335774|gb|ADZ12048.1| Uncharacterized protein family UPF0090 [Riemerella anatipestifer RA-GD] Length = 177 Score = 75.5 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 70/163 (42%), Gaps = 17/163 (10%) Query: 19 MGLAGDISSVIQPVI-EEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M + + +++ + E + + + +++ + ++ D+G +TL+DC + S+AI Sbjct: 23 MSIKAQVETLLNDFLSEREDLFLIDLKVSAGDDVV--VILDGDNG-VTLQDCLDASRAIE 79 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +D E E + L+V S G+ P+ + F + G + + D K+ G++ Sbjct: 80 FNMDRE---EHDFSLQVMSAGLSEPLTQIRQFRKNIGRDLDILL----NDSSKIEGELAR 132 Query: 138 TSETGFFLEKEKRGEKDMNELQI------AISFDSLLSARLIV 174 E L R K++ + ++ I + A + + Sbjct: 133 VEEDKVVLILRYRKPKEIGKGKVDVEEEKEILLSDIKKALVAI 175 >gi|160887869|ref|ZP_02068872.1| hypothetical protein BACUNI_00272 [Bacteroides uniformis ATCC 8492] gi|270294868|ref|ZP_06201069.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317477856|ref|ZP_07937042.1| hypothetical protein HMPREF1007_00158 [Bacteroides sp. 4_1_36] gi|156862555|gb|EDO55986.1| hypothetical protein BACUNI_00272 [Bacteroides uniformis ATCC 8492] gi|270274115|gb|EFA19976.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316905992|gb|EFV27760.1| hypothetical protein HMPREF1007_00158 [Bacteroides sp. 4_1_36] Length = 155 Score = 75.5 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 69/157 (43%), Gaps = 16/157 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + ++ + + V++++ + +L++ ++ +G + + DC ELS+ I L+ E+ Sbjct: 7 VCQIVDEWLAGKDYFLVEVTISPDDKILVE--IDHKEG-VWIEDCVELSRYIESKLNRED 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S GI +P ++ G V + D +KL G + E F Sbjct: 64 ---EDYELEVGSAGIGQPFKVLQQYINHIGKEVEV----LAKDGRKLSGVLKEADEQHFV 116 Query: 145 LEKEKR------GEKDMNELQIAISFDSLLSARLIVT 175 + +K+ + + + +++ + + +++ Sbjct: 117 VTIQKKVKEEGAKRPKLVDEDLTFTYEEIKYTKYLIS 153 >gi|329964511|ref|ZP_08301565.1| hypothetical protein HMPREF9446_03170 [Bacteroides fluxus YIT 12057] gi|328524911|gb|EGF51963.1| hypothetical protein HMPREF9446_03170 [Bacteroides fluxus YIT 12057] Length = 155 Score = 75.5 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 69/157 (43%), Gaps = 16/157 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + ++ +E + V++++ + ++++ ++ +G + + DC ELS+ I L+ E Sbjct: 7 VCQIVDEWLEGKDYFLVEVTISPDDKIVVE--IDHKEG-VWIEDCVELSRYIESKLNRE- 62 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 E Y LEV S GI +P ++ G V D +KL G + + F Sbjct: 63 --EEDYELEVGSAGIGQPFKVLQQYINHVGKEVEVLTR----DGRKLGGVLKEADDRHFV 116 Query: 145 LEKEKR------GEKDMNELQIAISFDSLLSARLIVT 175 + +K+ M + + + +D + + +++ Sbjct: 117 VTVQKKVKEEGAKRPKMVDEDLTLKYDEIKYTKYLIS 153 >gi|224536665|ref|ZP_03677204.1| hypothetical protein BACCELL_01541 [Bacteroides cellulosilyticus DSM 14838] gi|224521756|gb|EEF90861.1| hypothetical protein BACCELL_01541 [Bacteroides cellulosilyticus DSM 14838] Length = 155 Score = 75.5 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 69/157 (43%), Gaps = 16/157 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + ++ ++ + V++++ + ++++ ++ +G + + DC ELS+ I L+ E+ Sbjct: 7 VCQIVDEWLDGKEYFLVEVAISPDDKIVVE--IDHKEG-VWIEDCVELSRYIESKLNRED 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S GI +P + G V D +KL G + E F Sbjct: 64 ---EDYELEVGSAGIGQPFKVLQQYTNHIGKEVEV----LRKDGRKLCGVLKAADEQHFT 116 Query: 145 LEKEKRGEKDMN------ELQIAISFDSLLSARLIVT 175 + EK+ + + + +++D + + +++ Sbjct: 117 VTVEKKVKPEGAKRPQLVQEDEMLAYDEIKYTKYLIS 153 >gi|146299388|ref|YP_001193979.1| hypothetical protein Fjoh_1628 [Flavobacterium johnsoniae UW101] gi|146153806|gb|ABQ04660.1| protein of unknown function DUF150 [Flavobacterium johnsoniae UW101] Length = 166 Score = 75.1 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 78/170 (45%), Gaps = 18/170 (10%) Query: 13 PRIFGDMGLAGDISSVI-QPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 P + M ++ +I + ++E+ S + +++ + + + + ++ D+G + L+DC + Sbjct: 7 PSFYKIMTFKEKVNELITEALLEKPSIFLIDLAVSD--SFKISVGLDGDNG-VALQDCID 63 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+AI LD E E + LEV+S G+ P+ + + G + + +K+ Sbjct: 64 ISRAIENNLDRE---EQDFSLEVASVGVGSPLKLIRQYKKNIGRTLIVTT-----NNEKI 115 Query: 132 IGKIMGTSETGFFLE------KEKRGEKDMNELQIAISFDSLLSARLIVT 175 +++ ++ L K+ K+ + + I + + A + VT Sbjct: 116 EAELIEANDVFIILSWKAREPKKVGKGKETVQKEQQIPYTEIKEAVVTVT 165 >gi|319900403|ref|YP_004160131.1| hypothetical protein Bache_0520 [Bacteroides helcogenes P 36-108] gi|319415434|gb|ADV42545.1| protein of unknown function DUF150 [Bacteroides helcogenes P 36-108] Length = 155 Score = 75.1 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 68/157 (43%), Gaps = 16/157 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + ++ +E + V++ ++ + +L + ++ +G + + DC ELS+ I L E+ Sbjct: 7 VCQIVDEWLEGKDYFLVEV-IISPDDKIL-VEIDHKEG-VWIEDCVELSRYIESRLSRED 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S GI +P ++ G V D +KL G + E F Sbjct: 64 ---EDYELEVGSAGIGQPFKVLQQYINHIGSEVEVLTK----DGRKLCGVLKEADERHFV 116 Query: 145 LEKEKR------GEKDMNELQIAISFDSLLSARLIVT 175 + +K+ M + ++ ++D + + +++ Sbjct: 117 VTIQKKVKEEGAKRPKMVDEDLSFAYDEIKYTKYLIS 153 >gi|295086244|emb|CBK67767.1| Uncharacterized protein conserved in bacteria [Bacteroides xylanisolvens XB1A] Length = 155 Score = 74.7 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 66/157 (42%), Gaps = 16/157 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + ++ +E + V++++ + ++++ ++ +G + + DC ELS+ I L+ E Sbjct: 7 VCQIVDEWLEGKDYFLVEVTVSPDDKIVVE--IDHAEG-VWIEDCVELSRYIESKLNRE- 62 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 E Y LEV S GI +P + G V D +KL G + E F Sbjct: 63 --EEDYELEVGSAGIGQPFKVLQQYYIHIGQEVEVLTK----DGRKLAGILKDADEEKFT 116 Query: 145 ------LEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 ++ E + E +++ + + +++ Sbjct: 117 VAVQKKVKLEGSKRPKLIEEDETFTYEQIKYTKYLIS 153 >gi|254526613|ref|ZP_05138665.1| hypothetical protein P9202_1265 [Prochlorococcus marinus str. MIT 9202] gi|221538037|gb|EEE40490.1| hypothetical protein P9202_1265 [Prochlorococcus marinus str. MIT 9202] Length = 155 Score = 74.7 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 68/148 (45%), Gaps = 2/148 (1%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGN-MTLRDCEELSQAISPILD 81 + +++ V E + +++ +N +++I +++ +G+ ++L DC + S ++ Sbjct: 8 KLEILLKKVANEWDLKICSLNIQTNQNPTVVKITIKKTNGDDISLEDCALFNAPASEEIE 67 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 N++ Y LE+SS G+ + DF + G V ++ + K+ L G + S Sbjct: 68 NSNLLNCSYVLEISSQGVSDELTSDRDFKTFKGFPVNVQLNQKNSKKKFLNGLLYEKSND 127 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLS 169 + + + +K + + IS +L Sbjct: 128 YLAINIKGKIKKIPFDEVLKISLCTLKD 155 >gi|291460013|ref|ZP_06599403.1| hypothetical protein GCWU000341_02180 [Oribacterium sp. oral taxon 078 str. F0262] gi|291417354|gb|EFE91073.1| hypothetical protein GCWU000341_02180 [Oribacterium sp. oral taxon 078 str. F0262] Length = 98 Score = 74.7 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%) Query: 30 QPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDG-NMTLRDCEELSQAISPILDVENIIE 87 + + + + +S E + L++F+ R DG MT DC +S+ +S LD E+ IE Sbjct: 12 EELAPSLGYELDSVSYTREDGVNYLRVFILRKDGEPMTTDDCAAVSRPLSRWLDKEDFIE 71 Query: 88 GHYRLEVSSPG 98 Y LEV S G Sbjct: 72 DEYVLEVCSLG 82 >gi|145295892|ref|YP_001138713.1| hypothetical protein cgR_1817 [Corynebacterium glutamicum R] gi|166980238|sp|A4QEZ5|RIMP_CORGB RecName: Full=Ribosome maturation factor rimP gi|140845812|dbj|BAF54811.1| hypothetical protein [Corynebacterium glutamicum R] Length = 178 Score = 74.3 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 55/134 (41%), Gaps = 13/134 (9%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 +S++I+P+ F + + + + I V+ D L E SQ I + D Sbjct: 9 LSALIEPLAASHKFDLEGLKVTKAGPKSAVAIKVDSDSRP-DLDQLEVFSQEIGELFDAA 67 Query: 84 NI-----IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL--IGKIM 136 Y LEVS+PG+D P+ + R G +VA + ++++ IG + Sbjct: 68 EQRGELNFGAGYTLEVSTPGVDNPLTLPRHWRRNRGRLVALD----QDGRKRVARIGALN 123 Query: 137 GTSETGFFLEKEKR 150 +E+ K+ Sbjct: 124 DAETHVVLIERNKK 137 >gi|306836352|ref|ZP_07469330.1| conserved hypothetical protein [Corynebacterium accolens ATCC 49726] gi|304567712|gb|EFM43299.1| conserved hypothetical protein [Corynebacterium accolens ATCC 49726] Length = 179 Score = 74.3 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 58/157 (36%), Gaps = 17/157 (10%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 A ++ ++QP + I + K + I ++ D + EE+S IS Sbjct: 6 AQQLADLLQPRLAARGLDVEDIKTTKAGKKSQVIIRIDGDKRP-SSDVLEEVSDDISAFF 64 Query: 81 DVENIIEG-----HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 D + Y LEVS+PG+D P+ + R G V GD + +I Sbjct: 65 DEKEETGELNFGAGYTLEVSTPGVDLPLTAPRHWRRNQGRKVTFN----RGDDKSHTARI 120 Query: 136 --MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 + +E L ++ E + +++ A Sbjct: 121 GALNAAEDAVVLITSEKNEVHTEVER----LENIAHA 153 >gi|237785728|ref|YP_002906433.1| hypothetical protein ckrop_1145 [Corynebacterium kroppenstedtii DSM 44385] gi|259585744|sp|C4LJ85|RIMP_CORK4 RecName: Full=Ribosome maturation factor rimP gi|237758640|gb|ACR17890.1| hypothetical protein ckrop_1145 [Corynebacterium kroppenstedtii DSM 44385] Length = 189 Score = 74.3 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 62/168 (36%), Gaps = 22/168 (13%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + ++ P + V I K+ ++ I ++ D L EELS IS Sbjct: 9 ITQRVQQIVGP--RGLDVEKVDIKKAGAKSAVI-IRIDGDQRP-DLDVIEELSDEISRNF 64 Query: 81 DVENIIEG-----HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD-------K 128 D YRLEVS+PG D P++ F R GH+ + + + Sbjct: 65 DAAESDGELNFGAGYRLEVSTPGFDEPLLAARHFRRQRGHIATFVLNQADDEHATANAAN 124 Query: 129 QKLIGKI--MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + ++ + ET + + E + D + A+L V Sbjct: 125 ARFVARVGALNADETELAVVLPGKKEPSVK----TYPLDQIREAKLEV 168 >gi|227872000|ref|ZP_03990385.1| conserved hypothetical protein [Oribacterium sinus F0268] gi|227842143|gb|EEJ52388.1| conserved hypothetical protein [Oribacterium sinus F0268] Length = 108 Score = 74.3 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 2/79 (2%) Query: 22 AGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFV-ERDDGNMTLRDCEELSQAISPI 79 + ++ ++ M + ++ +E L+ F+ +D+ +MT+ DC +S+ +S Sbjct: 3 IERTKAYLEEILPGMGYVLDSVTYTIEAGTHYLRAFIFRKDEQDMTVNDCAMVSRRLSKW 62 Query: 80 LDVENIIEGHYRLEVSSPG 98 LD E+ I Y LEV S G Sbjct: 63 LDKEDFIAEEYILEVCSLG 81 >gi|255536445|ref|YP_003096816.1| hypothetical protein FIC_02321 [Flavobacteriaceae bacterium 3519-10] gi|255342641|gb|ACU08754.1| conserved hypothetical protein [Flavobacteriaceae bacterium 3519-10] Length = 155 Score = 74.3 bits (182), Expect = 9e-12, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 63/159 (39%), Gaps = 17/159 (10%) Query: 19 MGLAGDISSVIQPVIEEM-SFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M I ++ + E V + + + + ++ D G +TL+DC + S+AI Sbjct: 1 MDFRTKIEELLHGFLAERPDLFLVDLKFSAGDD--ITVILDGDSG-VTLQDCLDASRAIE 57 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +D E E + L+V S G+ P+V F + G + D ++ G++ Sbjct: 58 FNVDRE---EHDFALQVMSAGLSEPLVSPRQFRKNIGRELDI----LMKDSTQIEGELSK 110 Query: 138 TSETGFFLEKEKRGEKDMNE------LQIAISFDSLLSA 170 E L + R K++ + + I + + A Sbjct: 111 VDEDKITLVLQYRKPKEIGKGKMDVTEEKEILYTDIKKA 149 >gi|227833357|ref|YP_002835064.1| hypothetical protein cauri_1533 [Corynebacterium aurimucosum ATCC 700975] gi|262184343|ref|ZP_06043764.1| hypothetical protein CaurA7_10158 [Corynebacterium aurimucosum ATCC 700975] gi|254800550|sp|C3PH22|RIMP_CORA7 RecName: Full=Ribosome maturation factor rimP gi|227454373|gb|ACP33126.1| hypothetical protein cauri_1533 [Corynebacterium aurimucosum ATCC 700975] Length = 188 Score = 73.9 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 53/145 (36%), Gaps = 7/145 (4%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 ++ ++QPV + K + I ++ D+ + EELSQ IS I D Sbjct: 7 AQLTEILQPVAAARGLDIEDVKTTRAGKKSQVIIRIDGDERP-SSDLIEELSQEISEIFD 65 Query: 82 VENI-----IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 + Y LEVS+PG+D P+ + R G +V + G + + Sbjct: 66 AQEEAGTLNFGAGYTLEVSTPGVDFPLSASRHWRRNQGRLVGYALAEEPGTTRVARIGAL 125 Query: 137 GTSETGFFLEKEKRGEKDMNELQIA 161 E L + E ++ Sbjct: 126 SEDEESVALITMVKKEVRYQIERLE 150 >gi|19553192|ref|NP_601194.1| hypothetical protein NCgl1913 [Corynebacterium glutamicum ATCC 13032] gi|62390828|ref|YP_226230.1| hypothetical protein cg2179 [Corynebacterium glutamicum ATCC 13032] gi|34223122|sp|Q8NP37|RIMP_CORGL RecName: Full=Ribosome maturation factor rimP gi|21324758|dbj|BAB99381.1| Uncharacterized BCR [Corynebacterium glutamicum ATCC 13032] gi|41326166|emb|CAF20329.1| conserved hypothetical protein [Corynebacterium glutamicum ATCC 13032] Length = 178 Score = 73.9 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 12/145 (8%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 +S++I+P+ F + + + + I V+ D L E SQ I + D Sbjct: 9 LSALIEPLAASHKFDLEGLKVTKAGPKSAVAIKVDSDSRP-DLDQLEVFSQEIGELFDAA 67 Query: 84 NI-----IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 Y LEVS+PG+D P+ + R G +VA D +K + +I Sbjct: 68 EQRGELNFGAGYTLEVSTPGVDNPLTLPRHWRRNRGRLVAL-----DQDGKKRVARIGAL 122 Query: 139 SETGFFLEKEKRGEKDMNELQIAIS 163 ++ + +R +K + + ++ Sbjct: 123 NDAETHVVLIERNKKLLEVTTLELA 147 >gi|329954142|ref|ZP_08295237.1| hypothetical protein HMPREF9445_00063 [Bacteroides clarus YIT 12056] gi|328528119|gb|EGF55099.1| hypothetical protein HMPREF9445_00063 [Bacteroides clarus YIT 12056] Length = 155 Score = 73.9 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 68/157 (43%), Gaps = 16/157 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + ++ +++ + V++ + + ++++ ++ +G + + DC ELS+ I L+ E+ Sbjct: 7 VCQIVDEWLKDKDYFLVEVIISPDDKIVVE--IDHKEG-VWIEDCVELSRYIESRLNRED 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S GI +P + G V + D +K G + E F Sbjct: 64 ---EDYELEVGSAGIGQPFKVLQQYTNHIGKDVEV----LAKDGRKYCGTLKDADERQFT 116 Query: 145 LEKEKR------GEKDMNELQIAISFDSLLSARLIVT 175 + +K+ M + I +++ + + +++ Sbjct: 117 VTVQKKVKEEGAKRPKMVDEDITFTYEEIKYTKYLIS 153 >gi|296139426|ref|YP_003646669.1| hypothetical protein Tpau_1712 [Tsukamurella paurometabola DSM 20162] gi|296027560|gb|ADG78330.1| protein of unknown function DUF150 [Tsukamurella paurometabola DSM 20162] Length = 190 Score = 73.9 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 10/129 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 +S+VI P + + QI + ++ + V+ D G TL +L++ +S + Sbjct: 5 EAAVSTVIAPHLADAGLDLEQIRITNAGPKSVIAVVVDSDAGP-TLDVLADLARTLSDAV 63 Query: 81 DVENIIEG--HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI--M 136 D + + G + LEV++PG +RP+ + R G A E+ L+ +I + Sbjct: 64 DGADDVFGGQAFTLEVTTPGAERPLREARHWRRARGRQAAIEL----AGGDTLLARIGPL 119 Query: 137 GTSETGFFL 145 ET + Sbjct: 120 SDDETSVTV 128 >gi|313206786|ref|YP_004045963.1| hypothetical protein Riean_1300 [Riemerella anatipestifer DSM 15868] gi|312446102|gb|ADQ82457.1| protein of unknown function DUF150 [Riemerella anatipestifer DSM 15868] Length = 155 Score = 73.6 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 70/163 (42%), Gaps = 17/163 (10%) Query: 19 MGLAGDISSVIQPVI-EEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M + + +++ + E + + + +++ + ++ D+G +TL+DC + S+AI Sbjct: 1 MSIKAQVETLLNDFLSEREDLFLIDLKVSAGDDVV--VILDGDNG-VTLQDCLDASRAIE 57 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +D E E + L+V S G+ P+ + F + G + + D K+ G++ Sbjct: 58 FNMDRE---EHDFSLQVMSAGLSEPLTQIRQFRKNIGRDLDILL----NDSSKIEGELAR 110 Query: 138 TSETGFFLEKEKRGEKDMNELQI------AISFDSLLSARLIV 174 E L R K++ + +I I + A + + Sbjct: 111 VEENKVVLILRYRKPKEIGKGKIDVEEEKEILLSDIKKALVAI 153 >gi|328948923|ref|YP_004366260.1| hypothetical protein Tresu_2093 [Treponema succinifaciens DSM 2489] gi|328449247|gb|AEB14963.1| protein of unknown function DUF150 [Treponema succinifaciens DSM 2489] Length = 155 Score = 73.2 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 64/144 (44%), Gaps = 14/144 (9%) Query: 32 VIEEMSFRSVQISLLEEKNLL-LQIFVERDDG--NMTLRDCEELSQAI-SPILDVENIIE 87 V+ F+ V++ ++ + + + + D ++ + DC + +A+ S ++ + E Sbjct: 18 VMSAEGFKLVELHVVPQNGKINISAVIASSDSKKDIGVSDCAKAHRALFSEMVKILGKNE 77 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 +E+ SPGI+R + ++F + G V + + GKI + + LE Sbjct: 78 DDISMEMCSPGIERTLRNAAEFEIFTGREVRVWDKNVND---WVCGKIKSSDKNQVTLEL 134 Query: 148 EKRGEKDMNELQIAISFDSLLSAR 171 E GE+ ++++ + A+ Sbjct: 135 EGGGEE-------SVAYADIAKAK 151 >gi|225021162|ref|ZP_03710354.1| hypothetical protein CORMATOL_01174 [Corynebacterium matruchotii ATCC 33806] gi|305680947|ref|ZP_07403754.1| conserved hypothetical protein [Corynebacterium matruchotii ATCC 14266] gi|224946069|gb|EEG27278.1| hypothetical protein CORMATOL_01174 [Corynebacterium matruchotii ATCC 33806] gi|305659152|gb|EFM48652.1| conserved hypothetical protein [Corynebacterium matruchotii ATCC 14266] Length = 188 Score = 72.8 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 58/145 (40%), Gaps = 18/145 (12%) Query: 28 VIQPVIEEMSFRSVQISLLE----EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++QPV ++ I ++ K ++ I V+ D+ E ++Q IS + D + Sbjct: 15 LVQPVADQYGM---DIEYIKISRAGKKSVVAIAVDADNRP-DSDVLEAITQEISELFDEQ 70 Query: 84 NI-----IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 Y LEVS+PG+ P+ + + R G +V D +K +I Sbjct: 71 ETAGVLNFGPGYTLEVSTPGVSTPLTKPRHWRRNRGRLVTL-----VDDGKKRQVRIGAL 125 Query: 139 SETGFFLEKEKRGEKDMNELQIAIS 163 ++ + +R K I ++ Sbjct: 126 NDDETSVITIERVGKKFVVAPIQLA 150 >gi|333029429|ref|ZP_08457490.1| Ribosome maturation factor rimP [Bacteroides coprosuis DSM 18011] gi|332740026|gb|EGJ70508.1| Ribosome maturation factor rimP [Bacteroides coprosuis DSM 18011] Length = 155 Score = 72.4 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 70/159 (44%), Gaps = 20/159 (12%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL--DV 82 + +++ +E + V++S+ + ++++ ++ +G + + DC +LS+ I L D Sbjct: 7 VHQIVEEWLEGKEYFLVEVSVESDDKIVVE--IDHAEG-VWIEDCVDLSRFIESKLNRDE 63 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ Y LEV S G+ +P + G V KLIG+++ +E G Sbjct: 64 ED-----YELEVGSAGVGQPFKVLQQYYNHIGRQVEVLEKTGI----KLIGELLDVTEDG 114 Query: 143 F------FLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 ++ E + ++ I F+ + + +++ Sbjct: 115 IKVAVEKKVKVEGSKRPKLIAVEEDIPFEKIKYTKYLIS 153 >gi|167764122|ref|ZP_02436249.1| hypothetical protein BACSTE_02505 [Bacteroides stercoris ATCC 43183] gi|167698238|gb|EDS14817.1| hypothetical protein BACSTE_02505 [Bacteroides stercoris ATCC 43183] Length = 155 Score = 72.4 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 69/157 (43%), Gaps = 16/157 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + ++ +E+ + V++ + + ++++ ++ +G + + DC ELS+ I L+ E+ Sbjct: 7 VCQIVDEWLEDKEYFLVEVIISPDDKIVVE--IDHKEG-VWIEDCVELSRYIESRLNRED 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S GI +P ++ G V + D +K G + E F Sbjct: 64 ---EDYELEVGSAGIGQPFKVLQQYVNHIGKEVEV----LAKDGRKHCGVLKDADERQFT 116 Query: 145 LEKEKR------GEKDMNELQIAISFDSLLSARLIVT 175 + +K+ M + + +++ + + +++ Sbjct: 117 VTVQKKVKEEGAKRPKMVDEDLTFTYEEIKYTKYLIS 153 >gi|332881708|ref|ZP_08449356.1| hypothetical protein HMPREF9074_05149 [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680347|gb|EGJ53296.1| hypothetical protein HMPREF9074_05149 [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 155 Score = 72.0 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 58/133 (43%), Gaps = 10/133 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + +++ +E + V +S+ + ++++ ++ +G + + DC ELS+ I L E Sbjct: 7 VKGLVEEWLEGRDYFLVDVSVSADDRIVVE--IDHAEG-VWIEDCVELSRFIESRLSRE- 62 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 E Y LEV S GI +P ++ G V D +KL G + F Sbjct: 63 --EEDYELEVGSAGIGQPFKVLQQYVNHVGSEVDVLT----ADGRKLHGVLTAAGPEDFE 116 Query: 145 LEKEKRGEKDMNE 157 + + + + + + Sbjct: 117 VTMKVKKKLEGEK 129 >gi|88802099|ref|ZP_01117627.1| hypothetical protein PI23P_05532 [Polaribacter irgensii 23-P] gi|88782757|gb|EAR13934.1| hypothetical protein PI23P_05532 [Polaribacter irgensii 23-P] Length = 153 Score = 71.6 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 66/154 (42%), Gaps = 16/154 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 I ++ + ++ I L N +++ V+ D+G + L +C +S+ I LD E Sbjct: 6 IKDLVDEAL-ALNDSLYLIELSISVNDKIKVVVDGDNG-VPLSECIRISKNIDANLDRE- 62 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 + LEV++P I P+ K +L+ ++ + ++ G + E Sbjct: 63 --SEDFSLEVTTPDIAHPLKVKRQYLKNLNRILKVKTAA-----EEFEGTLTAADEDKII 115 Query: 145 LEKEKRGEKDMNE------LQIAISFDSLLSARL 172 L+ + R K++ + I I+ ++ AR+ Sbjct: 116 LQWKAREPKEIGKGKVTVLKTITIAHTDIIEARV 149 >gi|21673078|ref|NP_661143.1| hypothetical protein CT0239 [Chlorobium tepidum TLS] gi|34222902|sp|Q8KFT3|RIMP_CHLTE RecName: Full=Ribosome maturation factor rimP gi|21646149|gb|AAM71485.1| conserved hypothetical protein [Chlorobium tepidum TLS] Length = 173 Score = 71.6 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 68/155 (43%), Gaps = 16/155 (10%) Query: 37 SFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD--VENII--EGHYR 91 + + +++ V+ D G +++ C +LS+AI L+ E+ + G + Sbjct: 22 GEEIYVVEAAIRAGGRKIELTVDTDKG-VSIDQCAKLSRAIRARLEACEEDSMLSSGEFD 80 Query: 92 LEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM------GTSETGFFL 145 L VSSPGI P+ + +LR G ++ + +++ GK++ + + Sbjct: 81 LMVSSPGIGEPIQVQRQYLRHLGRLIRVNYLDEEEQPKEITGKLLEAAVGPEAEQPSITI 140 Query: 146 E--KEKRGEKDMNELQIAISFDSLLSARLIVTDEL 178 E KE R ++ E + I ++ A +V EL Sbjct: 141 EAVKEGRKKRTAGEPPVTIRLADVVRA--VVQTEL 173 >gi|259585818|sp|A5FJF7|RIMP_FLAJ1 RecName: Full=Ribosome maturation factor rimP Length = 154 Score = 71.6 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 76/164 (46%), Gaps = 18/164 (10%) Query: 19 MGLAGDISSVI-QPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M ++ +I + ++E+ S + +++ + + + + ++ D+G + L+DC ++S+AI Sbjct: 1 MTFKEKVNELITEALLEKPSIFLIDLAVSD--SFKISVGLDGDNG-VALQDCIDISRAIE 57 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD E E + LEV+S G+ P+ + + G + + +K+ +++ Sbjct: 58 NNLDRE---EQDFSLEVASVGVGSPLKLIRQYKKNIGRTLIVTT-----NNEKIEAELIE 109 Query: 138 TSETGFFLE------KEKRGEKDMNELQIAISFDSLLSARLIVT 175 ++ L K+ K+ + + I + + A + VT Sbjct: 110 ANDVFIILSWKAREPKKVGKGKETVQKEQQIPYTEIKEAVVTVT 153 >gi|300933075|ref|ZP_07148331.1| hypothetical protein CresD4_03348 [Corynebacterium resistens DSM 45100] Length = 200 Score = 71.6 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 66/181 (36%), Gaps = 37/181 (20%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDG-----------------N 63 + S+++ V+ + I + ++IFV+ + Sbjct: 6 TTQLKSLLETVVHQYGCVIEDIQVARAGAKSSVKIFVDSEVAVPTTLASATEVQPHEFTG 65 Query: 64 MTLRDCEELSQAISPILDVE------NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 L E+LS+ IS LD N G Y LEV S G P+V+ +++ G +V Sbjct: 66 PDLDAVEQLSRDISAELDRAEEQGQLNFGPG-YTLEVGSAGASAPIVKPRHWVKNLGRLV 124 Query: 118 ACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGE--------KDMNELQIAISFDSLLS 169 G + ++ +E G L +K E ++++ ++ I F + Sbjct: 125 KL----PEGPLKGAKARVAQAAEDGVILIFKKGKELNVSLHSLEEVSGARVEIEFSKVPE 180 Query: 170 A 170 A Sbjct: 181 A 181 >gi|183220910|ref|YP_001838906.1| hypothetical protein LEPBI_I1523 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911006|ref|YP_001962561.1| hypothetical protein LBF_1470 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|226734181|sp|B0SH16|RIMP_LEPBA RecName: Full=Ribosome maturation factor rimP gi|226734677|sp|B0SQH2|RIMP_LEPBP RecName: Full=Ribosome maturation factor rimP gi|167775682|gb|ABZ93983.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779332|gb|ABZ97630.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 162 Score = 71.2 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 71/165 (43%), Gaps = 11/165 (6%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLL-QIFVER---DDGNMTLRDCE 70 ++ + + I V+ P + + + KN L +I ++ G+ +L DCE Sbjct: 2 VYTEENIRELILRVLAPPLA-----LFSLQVQNRKNHALIEIELDHLTDKTGSASLEDCE 56 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 +S+ + LD E + L+VSS G +R + D +R+ G +V E+ L SG K Sbjct: 57 TVSRRLKEELDQWG-EEFDFTLQVSSAGAERVLRLPEDLIRFQGLLVKLEVPLESGKWDK 115 Query: 131 LIGKIMGTSETGFFLE-KEKRGEKDMNELQIAISFDSLLSARLIV 174 + ++ S L +++ N+ +++ + L + Sbjct: 116 RLYRLGPVSGDSVELTLYDRKTRHKKNQKSVSMPIAEIRKGNLYL 160 >gi|34223166|sp|Q9Z5J2|RIMP_MYCLE RecName: Full=Putative ribosome maturation factor rimP Length = 150 Score = 71.2 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 2/97 (2%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQAISPILDV 82 + ++ + + + + + + + D + LS ++S +LD Sbjct: 10 QVIELLGGEVARAGYEVEDVIIHTWSQPFWITVLADGDT-VLARDIIATLSHSVSALLDG 68 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVAC 119 + I Y LEVSS G+ RP + F R G V Sbjct: 69 LDNIVDRYFLEVSSLGMGRPFTSEKHFRRARGRKVEL 105 >gi|319441433|ref|ZP_07990589.1| ribosome maturation protein RimP [Corynebacterium variabile DSM 44702] Length = 186 Score = 71.2 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 52/127 (40%), Gaps = 16/127 (12%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++ + +P+ + F +++ +++ V+ D L EELSQA+S Sbjct: 6 EQELREIAEPLAASLGFDVEAVNITRAGAKSAVRLAVDGDTRP-DLDQLEELSQAVSAEF 64 Query: 81 DVENI-----IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 D Y LE+++PG+D P+ F R G +V +KL +I Sbjct: 65 DARETAGTLNFGPGYTLELTTPGLDTPLTAGRHFRRNVGRLVLLR-------GKKL--RI 115 Query: 136 MGTSETG 142 G E G Sbjct: 116 AGVDEDG 122 >gi|150024571|ref|YP_001295397.1| hypothetical protein FP0468 [Flavobacterium psychrophilum JIP02/86] gi|259585775|sp|A6GWV6|RIMP_FLAPJ RecName: Full=Ribosome maturation factor rimP gi|149771112|emb|CAL42579.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86] Length = 154 Score = 71.2 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 72/163 (44%), Gaps = 18/163 (11%) Query: 19 MGLAGDISSVIQPVIEEM-SFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M + +++ + E + + +++ + ++ I ++ D+G + L+DC +S++I Sbjct: 1 MAFKEKVKELLEQGLAEYPNLFLIDLNINDSNKII--ITLDGDNG-VQLQDCINISRSID 57 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD E + + LEV+S G+ P+ + + G + + Q + ++ Sbjct: 58 NNLDREEV---DFALEVASAGVSLPLKLVRQYKKNIGRTLKIKTAT-----QTIEALLLE 109 Query: 138 TSETGFFLE---KEKRGEKDMNELQIA---ISFDSLLSARLIV 174 S+ +E +E + E + I++ ++ A +I+ Sbjct: 110 VSDQDITVEWSSREPKKIGKGKETVVHNEKIAYAAIQEAIVII 152 >gi|110005299|emb|CAK99623.1| conserved hypothetical upf0090 protein [Spiroplasma citri] Length = 160 Score = 70.9 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 62/155 (40%), Gaps = 6/155 (3%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + ++ + + + I+ ++ ++Q+ +E L +S+ I+ ++ Sbjct: 8 ETQLKETLENYLTKQNLTLFAINYFQDFDTNVVQVLIEDKTTVFDLERLTVISEEINQLV 67 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS- 139 D ++ Y LEVS+PG +RP+ ++ + V E + ++ G++ Sbjct: 68 DNLDLFSEEYLLEVSTPGAERPLRNWNELQQHLKGYVYLEFNEKVNNLVEVTGELSMVDQ 127 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + +G + + + ++ AR V Sbjct: 128 QQNLTITYFVKGARKTLQTN----YQNIKFARCAV 158 >gi|91217186|ref|ZP_01254148.1| hypothetical protein P700755_04298 [Psychroflexus torquis ATCC 700755] gi|91184786|gb|EAS71167.1| hypothetical protein P700755_04298 [Psychroflexus torquis ATCC 700755] Length = 157 Score = 70.5 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 67/147 (45%), Gaps = 17/147 (11%) Query: 34 EEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLE 93 E+ + + + + ++ N + + ++ D ++++ DC +S+AI LD E IE + LE Sbjct: 18 EDEALFLIDLQISDKNN--INVIIDGDR-DLSITDCVNMSRAIEHNLDRE--IED-FSLE 71 Query: 94 VSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEK 153 V+S G P+ F + G +A E + + + S+ L+ + K Sbjct: 72 VASCGATEPLKFPRQFKKNIGRKLAVE-----SQNESIEATLTAASDEDIELKWTAKEPK 126 Query: 154 DMN------ELQIAISFDSLLSARLIV 174 + E + I+++ + A++I+ Sbjct: 127 PIGKGKHKVEKEAKIAYEDIDKAQVII 153 >gi|307718806|ref|YP_003874338.1| hypothetical protein STHERM_c11200 [Spirochaeta thermophila DSM 6192] gi|306532531|gb|ADN02065.1| hypothetical protein STHERM_c11200 [Spirochaeta thermophila DSM 6192] Length = 182 Score = 70.5 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 62/148 (41%), Gaps = 15/148 (10%) Query: 31 PVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGH 89 P++E+M + V++ L L+I + ++++ DC + + + P + Sbjct: 42 PLLEKMGYALVELHLRYRRGGAALEIVIHGA--HLSVDDCARVLRLLKPKA-QLLLDLAD 98 Query: 90 YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEK 149 +EV SPGIDR + + + + G + L + ++ G + +E L K Sbjct: 99 LHMEVMSPGIDRVLKNRDELALFVGKGLKL---LDTRSQRWEGGILEAVTEDHVVLRK-- 153 Query: 150 RGEKDMNELQIAISFDSLLSARLIVTDE 177 + +I DS+ A+L T E Sbjct: 154 ------GAERRSIPIDSIGKAKLDFTQE 175 >gi|225011159|ref|ZP_03701621.1| protein of unknown function DUF150 [Flavobacteria bacterium MS024-3C] gi|225004721|gb|EEG42681.1| protein of unknown function DUF150 [Flavobacteria bacterium MS024-3C] Length = 153 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 70/158 (44%), Gaps = 18/158 (11%) Query: 22 AGDISSVIQPVIEEM-SFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++ ++ +EE S + + +K + + ++ D G +TL+DC +S+AI L Sbjct: 3 EKEVRILLDAALEENPSLFLIDFKVTTDKK--ISVVLDGDTG-VTLQDCMNVSRAIEHNL 59 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D E I G L+V+S G P+V + + + + + + G ++ + Sbjct: 60 DKETIDFG---LDVASAGATTPLVMPRQYKKNLQRSLTVRT-----ENEVVEGNLIQILD 111 Query: 141 TGFFLEKEKRGEKDMNELQI------AISFDSLLSARL 172 G L+ + R K + + ++ I+F + A++ Sbjct: 112 HGIVLQWKAREPKPIGKGKVTVTKEQEIAFTDIKEAKV 149 >gi|298372249|ref|ZP_06982239.1| conserved hypothetical protein [Bacteroidetes oral taxon 274 str. F0058] gi|298275153|gb|EFI16704.1| conserved hypothetical protein [Bacteroidetes oral taxon 274 str. F0058] Length = 152 Score = 69.7 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 66/154 (42%), Gaps = 16/154 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 I I+ + V +S+ + ++++ ++ + ++ L C EL++ I D + Sbjct: 7 IRQTIEEKLASTDCFLVSLSISGDNQIMVE--IDSET-SVDLDFCVELTRYIEQHFDRD- 62 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LE+ S I +P V + + + G V + +K+ G ++ GF Sbjct: 63 --AEDYSLEIGSYSITKPFVDRRQYRKNIGRKVEVLT----EESRKIRGTLVAVDNDGFT 116 Query: 145 LEKEKR------GEKDMNELQIAISFDSLLSARL 172 LE E++ K + + +I + + S+ +L Sbjct: 117 LEIEEKELVEGQKRKKLVKKEITLLYSSVKQTKL 150 >gi|315185929|gb|EFU19693.1| protein of unknown function DUF150 [Spirochaeta thermophila DSM 6578] Length = 160 Score = 69.3 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 63/148 (42%), Gaps = 15/148 (10%) Query: 31 PVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGH 89 P++E+M + V++ L L+I + ++++ DC + + + P + + Sbjct: 20 PLLEKMGYALVELHLRYRRGGAALEIVIHGA--HLSVDDCARVLRLLKPKAQLLLDLADL 77 Query: 90 YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEK 149 +EV SPGIDR + + + + G + L + ++ G + +E L K Sbjct: 78 -HMEVMSPGIDRVLKNRDELALFVGKGLKL---LDTRSQRWEGGILEAVTEDHVVLRK-- 131 Query: 150 RGEKDMNELQIAISFDSLLSARLIVTDE 177 + +I DS+ A+L T E Sbjct: 132 ------GAERRSIPIDSIGKAKLDFTQE 153 >gi|300858701|ref|YP_003783684.1| hypothetical protein cpfrc_01284 [Corynebacterium pseudotuberculosis FRC41] gi|300686155|gb|ADK29077.1| hypothetical protein cpfrc_01284 [Corynebacterium pseudotuberculosis FRC41] gi|302206411|gb|ADL10753.1| Ribosome maturation factor rimP [Corynebacterium pseudotuberculosis C231] gi|302330967|gb|ADL21161.1| Ribosome maturation factor rimP [Corynebacterium pseudotuberculosis 1002] gi|308276654|gb|ADO26553.1| Ribosome maturation factor rimP [Corynebacterium pseudotuberculosis I19] Length = 184 Score = 68.9 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 59/166 (35%), Gaps = 20/166 (12%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQ-IFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I P+ + I + L I ++ D+ L E +S AIS + D + Sbjct: 9 LTELITPIAAAHNMDLEHIRVNRAGKKTLVAISLDSDNRP-DLDQLEVVSTAISELFDAQ 67 Query: 84 NI-----IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 Y LEV +PGID P+ + +V E K+ + + Sbjct: 68 EASGALSFGPGYTLEVGTPGIDVPLTTARQWRGNRHRLVVLE----VEGKKSVERIGAVS 123 Query: 139 SETGFFLEKEKRGEK---------DMNELQIAISFDSLLSARLIVT 175 + + +++G K + + + I F A L T Sbjct: 124 DDETRVIVVKRQGRKISVRSIELGENTQAVVEIEFAKPAEAELEFT 169 >gi|15639878|ref|NP_219328.1| hypothetical protein TP0893 [Treponema pallidum subsp. pallidum str. Nichols] gi|189026116|ref|YP_001933888.1| hypothetical protein TPASS_0893 [Treponema pallidum subsp. pallidum SS14] gi|51316577|sp|O83863|RIMP_TREPA RecName: Full=Ribosome maturation factor rimP gi|3323211|gb|AAC65850.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum str. Nichols] gi|189018691|gb|ACD71309.1| hypothetical protein TPASS_0893 [Treponema pallidum subsp. pallidum SS14] gi|291060252|gb|ADD72987.1| hypothetcal protein [Treponema pallidum subsp. pallidum str. Chicago] Length = 156 Score = 68.6 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 52/151 (34%), Gaps = 23/151 (15%) Query: 30 QPVIEEMSFRSVQISL--------LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 V+ + V + +++ + + G +TL C + + + P L Sbjct: 15 AEVVRSLGCALVDLQWSVSAVSRRVQQAQGRARAVIYSA-GGVTLDVCARVHRILVPRLQ 73 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + + LEV SPG +R + ++F + G V Q +G + ET Sbjct: 74 ALGGVRTVF-LEVGSPG-ERVIRNAAEFSIFLGETVKVWFCT----GQFQVGTLAFADET 127 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 L + + I + L A+L Sbjct: 128 CLTL--------TAGGVPVTIPYVQLTKAQL 150 >gi|25028437|ref|NP_738491.1| hypothetical protein CE1881 [Corynebacterium efficiens YS-314] gi|23493722|dbj|BAC18691.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length = 192 Score = 68.6 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 57/138 (41%), Gaps = 13/138 (9%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 A +++++I PV+ + + + + I ++ D L E +SQ I + Sbjct: 16 AEELTALIAPVVATRHLDVEGLRVTKAGPKSTVAIKLDSDSRP-DLDLLEVVSQEIGELF 74 Query: 81 DVENI-----IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL--IG 133 D Y LEVS+PG+D P+ + + R +V+ + K+++ IG Sbjct: 75 DAAEARGELSFGAGYLLEVSTPGVDMPLTQPRHWRRNRTRLVSLD----VDGKKRIARIG 130 Query: 134 KIMGTSETGFFLEKEKRG 151 + +E+ K+ Sbjct: 131 ALNAEETAVILIERNKKA 148 >gi|260905193|ref|ZP_05913515.1| putative uncharacterized Bcr YhbC family protein [Brevibacterium linens BL2] Length = 154 Score = 68.2 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 54/158 (34%), Gaps = 16/158 (10%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDG---NMTLRDCEELSQAIS 77 I +++ ++ F + + + L + V+ D+ M++ E S+ + Sbjct: 5 VAQIEELLREPLQASGFYLESVKAVAAGQRRALTVVVDLDESSTEPMSMDKIAESSRLVG 64 Query: 78 PILDVENIIEG-HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 LD + Y+LEV+SPG R + F R G + K + Sbjct: 65 DTLDEVEVFRDKPYQLEVTSPGATRKLEAPRHFKRVLGRRLEISTK-----KDTFKLDLD 119 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + G + + + ++ A++ + Sbjct: 120 DVGDHSI------SGIDPASREKRTVKLGDIVKAQVEL 151 >gi|78779968|ref|YP_398080.1| hypothetical protein PMT9312_1584 [Prochlorococcus marinus str. MIT 9312] gi|91208012|sp|Q318Q1|RIMP_PROM9 RecName: Full=Ribosome maturation factor rimP gi|78713467|gb|ABB50644.1| Protein of unknown function DUF150 [Prochlorococcus marinus str. MIT 9312] Length = 155 Score = 67.8 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 65/149 (43%), Gaps = 2/149 (1%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN--MTLRDCEELSQAISPIL 80 + ++++ V + ++ ++L +N ++ + + ++L DC + S + Sbjct: 7 SRLENLLEKVANVLDYKICSVNLQTNQNPIVIKIIIKKTNGDDISLDDCALFNTPASEEI 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + N+++ Y LE+SS G+ + + DF + G V E+ + + L G + S+ Sbjct: 67 ENSNLLKCSYVLEISSQGVSDELTSERDFKTFKGFPVNVELNQKNSKIKFLNGLLYEKSK 126 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLS 169 + + + +K + IS +L Sbjct: 127 DYLAINIKGKIKKIPFNEVLKISLCTLKD 155 >gi|258647227|ref|ZP_05734696.1| conserved hypothetical protein [Prevotella tannerae ATCC 51259] gi|260852980|gb|EEX72849.1| conserved hypothetical protein [Prevotella tannerae ATCC 51259] Length = 155 Score = 67.8 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 61/152 (40%), Gaps = 20/152 (13%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL--DV 82 + +++ ++ + +++ + ++++ ++ +G + + DC +LS+ I L D Sbjct: 7 VKQLVEEWLDGKDYFLTDLTVSPDDRIVVE--MDHVEG-VWIEDCVDLSRYIEERLNRDE 63 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ Y LEV S GI +P + V G+ +KL G + Sbjct: 64 ED-----YELEVGSAGIGQPFKVHRQYEIHVDSPVVVLT----GEGKKLRGILTAVESDH 114 Query: 143 FFLEKEKRGEKDMN------ELQIAISFDSLL 168 F L +++ + + + F+ + Sbjct: 115 FILTIKEKVRPEGAKRPQWVDKDLTFRFEDVK 146 >gi|259507496|ref|ZP_05750396.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|34223119|sp|Q8FPA4|RIMP_COREF RecName: Full=Ribosome maturation factor rimP gi|259164881|gb|EEW49435.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length = 182 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 57/138 (41%), Gaps = 13/138 (9%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 A +++++I PV+ + + + + I ++ D L E +SQ I + Sbjct: 6 AEELTALIAPVVATRHLDVEGLRVTKAGPKSTVAIKLDSDSRP-DLDLLEVVSQEIGELF 64 Query: 81 DVENI-----IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL--IG 133 D Y LEVS+PG+D P+ + + R +V+ + K+++ IG Sbjct: 65 DAAEARGELSFGAGYLLEVSTPGVDMPLTQPRHWRRNRTRLVSLD----VDGKKRIARIG 120 Query: 134 KIMGTSETGFFLEKEKRG 151 + +E+ K+ Sbjct: 121 ALNAEETAVILIERNKKA 138 >gi|227488650|ref|ZP_03918966.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51867] gi|227091544|gb|EEI26856.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51867] Length = 180 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 54/142 (38%), Gaps = 13/142 (9%) Query: 37 SFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEG-----HY 90 +++ +E + + + V+ + + E S A+S + D + + Y Sbjct: 21 GLFPLRVKTVEAGPHSTVTVIVDSESDP-DIDAVGEFSTALSQVFDEKEASKELSFGAGY 79 Query: 91 RLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV--LSSGDKQKLIGKIMGTSETGFFLEKE 148 LEVS+PGID P+ R + R G V + + + IG + E L Sbjct: 80 NLEVSTPGIDEPLTRPYQWARNRGRAVTVTLKGQEPATYR---IGAL-SPEEDRVVLIYS 135 Query: 149 KRGEKDMNELQIAISFDSLLSA 170 + + + + ++ + A Sbjct: 136 EGTKGNKKAKKTIVALHDVKRA 157 >gi|296117672|ref|ZP_06836256.1| conserved hypothetical protein [Corynebacterium ammoniagenes DSM 20306] gi|295969403|gb|EFG82644.1| conserved hypothetical protein [Corynebacterium ammoniagenes DSM 20306] Length = 179 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 50/146 (34%), Gaps = 14/146 (9%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + P++ + QI + K + I ++ + + EE+S+ I Sbjct: 6 EQKLEDFLTPILAKHDLDVEQIKTTKAGKKSQVVIRIDGEKRP-SSDVLEEMSRTIGDAF 64 Query: 81 DVENI-----IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 D Y LEVS+PG+D P+ F R G + + + IG + Sbjct: 65 DAAEEAGELNFGAGYTLEVSTPGVDLPLTAPRHFRRNRGRKIKSSL------GEVRIGAL 118 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIA 161 E + R + ++ Sbjct: 119 -SEDEQNVIVVTSARDIAKVQVQRLE 143 >gi|156319550|ref|XP_001618133.1| hypothetical protein NEMVEDRAFT_v1g225486 [Nematostella vectensis] gi|156197569|gb|EDO26033.1| predicted protein [Nematostella vectensis] Length = 271 Score = 67.0 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 55/112 (49%), Gaps = 7/112 (6%) Query: 19 MGLAGDISSVI-QPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M + ++ ++E + + + E + I ++ D+G ++L+DC ++S+ + Sbjct: 1 MTFKEKVEKLLDAAILERDHLFLIDLKIDEANK--INIVLDGDNG-VSLQDCVDISRLVE 57 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ 129 LD E E + LEV+S G+ P+ + + G + ++V+ + +++ Sbjct: 58 QDLDRE---ENDFSLEVASAGLSSPLKLVRQYKKNIGRKLKAKVVVEAKEEK 106 >gi|33862047|ref|NP_893608.1| hypothetical protein PMM1491 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|51316771|sp|Q7V002|RIMP_PROMP RecName: Full=Ribosome maturation factor rimP gi|33634265|emb|CAE19950.1| DUF150 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 155 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 68/152 (44%), Gaps = 10/152 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGN-MTLRDCEELSQAISPIL 80 ++ S++Q V +E + + + +L +N + ++I + + + + +TL DC + ++ Sbjct: 7 SNLESLLQGVAKEFNLKIHSLDILTNQNPIIVKIIICKTNKDDITLDDCSRFNNPAISVI 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + N++ Y LE+SS G+ + + DF + G V E+ + + L G + S+ Sbjct: 67 ENSNLLNCSYVLEISSQGVSDELTSERDFKTFKGFPVNVELNQKNSQIKFLNGLLYEKSK 126 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ I F+ +L L Sbjct: 127 DYL--------AINIKGKIKKIPFNEVLKVSL 150 >gi|189345842|ref|YP_001942371.1| hypothetical protein Clim_0298 [Chlorobium limicola DSM 245] gi|226703665|sp|B3EFA9|RIMP_CHLL2 RecName: Full=Ribosome maturation factor rimP gi|189339989|gb|ACD89392.1| protein of unknown function DUF150 [Chlorobium limicola DSM 245] Length = 176 Score = 66.2 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 65/170 (38%), Gaps = 19/170 (11%) Query: 19 MGLAGDISSVIQPVIE------EMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEE 71 + + I + + +E V + + ++I ++ D G + + C Sbjct: 2 VSMEEKIKACVLQALESAAGTKGEGVYLVSVRVKGAGKQTKIEILLDSDTG-IRIDQCSF 60 Query: 72 LSQAISPILDVEN----IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD 127 S+ I +L+ E + + L VSSPG+ P++ +LR G ++ Sbjct: 61 FSRRIRELLENEGGTPVLDGEDFDLMVSSPGLGEPLLMPRQYLRHTGRLLRVIWKDEQQS 120 Query: 128 KQKLIGKIMGT-----SETGFFLEKEKRGEKDMNELQ--IAISFDSLLSA 170 ++ + G++ T L K G+K +Q I + D ++ A Sbjct: 121 EKTVTGRLQQVLKTEGEITAVRLVPVKTGKKSAGNVQEPIELMLDCIVRA 170 >gi|227543253|ref|ZP_03973302.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51866] gi|227181062|gb|EEI62034.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51866] Length = 180 Score = 66.2 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 55/142 (38%), Gaps = 13/142 (9%) Query: 37 SFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEG-----HY 90 +++ +E + + + V+ + + E S A+S + D + + Y Sbjct: 21 GLFPLRVKTVEAGPHSTVTVIVDSESDP-DIDAVGEFSTALSQVFDEKEASKELSFGAGY 79 Query: 91 RLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV--LSSGDKQKLIGKIMGTSETGFFLEKE 148 LEVS+PGID P+ R + R G V+ + + + IG + E L Sbjct: 80 NLEVSTPGIDEPLTRPYQWARNRGRAVSVTLKGQEPATYR---IGAL-SPEEDRVVLIYS 135 Query: 149 KRGEKDMNELQIAISFDSLLSA 170 + + + + ++ + A Sbjct: 136 EGTKGNKKAKKTIVALHDVERA 157 >gi|254369912|ref|ZP_04985920.1| predicted protein [Francisella tularensis subsp. tularensis FSC033] gi|151568158|gb|EDN33812.1| predicted protein [Francisella tularensis subsp. tularensis FSC033] Length = 81 Score = 66.2 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 7/83 (8%) Query: 90 YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEK 149 Y LEVSSPG++R + G V + G + K G + L E Sbjct: 1 YILEVSSPGMNRQIFNIIQAQALVGFNVKAVTLAPVGSQTKFKGVLERVEGNNVILNLED 60 Query: 150 RGEKDMNELQIAISFDSLLSARL 172 E I+ FD L R+ Sbjct: 61 GKE-------ISFDFDELKKLRV 76 >gi|123966904|ref|YP_001011985.1| hypothetical protein P9515_16711 [Prochlorococcus marinus str. MIT 9515] gi|166980184|sp|A2BYL7|RIMP_PROM5 RecName: Full=Ribosome maturation factor rimP gi|123201270|gb|ABM72878.1| DUF150 [Prochlorococcus marinus str. MIT 9515] Length = 155 Score = 66.2 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 70/149 (46%), Gaps = 2/149 (1%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD--DGNMTLRDCEELSQA 75 D L ++ +++ V +E + + ++LL +N ++ + + + ++T+ DC + Sbjct: 2 DKELKNNLEILLEEVAKEFNLKVYSLNLLTNQNPIIIKIIIKKTNEEDITIEDCSRFNNP 61 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 S +++ N+++ Y LE+SS G+ + + DF + G V E+ + + L G + Sbjct: 62 ASAVIENSNLLKCSYVLEISSQGVSDELTSERDFKTFKGFPVNVELNQKNSRIKLLNGLL 121 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISF 164 S+ + + + +K + IS Sbjct: 122 YEKSKDYLAINIKGKIKKIPFNEVLKISL 150 >gi|194333209|ref|YP_002015069.1| hypothetical protein Paes_0365 [Prosthecochloris aestuarii DSM 271] gi|259586180|sp|B4S4S4|RIMP_PROA2 RecName: Full=Ribosome maturation factor rimP gi|194311027|gb|ACF45422.1| protein of unknown function DUF150 [Prosthecochloris aestuarii DSM 271] Length = 179 Score = 65.9 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 63/144 (43%), Gaps = 14/144 (9%) Query: 40 SVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHY----RLEV 94 V +++ + +++ V+ + G + + C LS+ I +++ ++ ++ Y L V Sbjct: 31 LVDLAVKAAGRSVKIEVLVDSEQG-IVISQCAALSRRIRDMIESDDELQEVYGEVFELMV 89 Query: 95 SSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS-----ETGFFLEKEK 149 SSPG+ P+ ++R G +++ +G + G+++ E LE + Sbjct: 90 SSPGLGGPIRHVRQYIRHTGRLLSVRYRDDAGSVHDVTGRLIEVDLAEGHEPFLVLEPVR 149 Query: 150 RGEKD---MNELQIAISFDSLLSA 170 G K + ++ + D + A Sbjct: 150 SGRKKNGSLPPSRLKMMLDRIDKA 173 >gi|4455675|emb|CAB36567.1| hypothetical protein MLCB596.11 [Mycobacterium leprae] Length = 122 Score = 65.5 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 25/50 (50%) Query: 70 EELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVAC 119 LS ++S +LD + I Y LEVSS G+ RP + F R G V Sbjct: 28 ATLSHSVSALLDGLDNIVDRYFLEVSSLGMGRPFTSEKHFRRARGRKVEL 77 >gi|218509056|ref|ZP_03506934.1| hypothetical protein RetlB5_16765 [Rhizobium etli Brasil 5] Length = 83 Score = 65.5 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 2/69 (2%) Query: 119 CEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDEL 178 CE + ++++ GKI+ GF LE+++ E +++I F +L A+LI+TD+L Sbjct: 1 CETSIMICNRKRFRGKIVEADADGFTLERDQIAY--GEEPKVSIPFTALSDAKLILTDDL 58 Query: 179 LRASLNNYG 187 +R +L Sbjct: 59 IRDALRADK 67 >gi|323342030|ref|ZP_08082263.1| hypothetical protein HMPREF0357_10443 [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464455|gb|EFY09648.1| hypothetical protein HMPREF0357_10443 [Erysipelothrix rhusiopathiae ATCC 19414] Length = 143 Score = 65.1 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 55/148 (37%), Gaps = 12/148 (8%) Query: 27 SVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 I+P E + + L+ + L L I +D + L C + +A LD E I Sbjct: 6 EKIKPTAEALGLDIIDAELISNELLELSI-ARKDFKPVDLEICAKAGEAFGEALDYE--I 62 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE 146 L+V S G +R ++ + D+ V + + G ++ E + Sbjct: 63 G----LDVGSAGAERVIL-EEDYDNVVDQYVLIKFKNPIQGADYVEGTVISVDENEVVVS 117 Query: 147 KEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ +IAI ++ RL V Sbjct: 118 YRQKTALK----KIAIERLNIKMLRLAV 141 >gi|152965408|ref|YP_001361192.1| hypothetical protein Krad_1440 [Kineococcus radiotolerans SRS30216] gi|189038696|sp|A6W7Y9|RIMP_KINRD RecName: Full=Ribosome maturation factor rimP gi|151359925|gb|ABS02928.1| protein of unknown function DUF150 [Kineococcus radiotolerans SRS30216] Length = 208 Score = 64.7 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 7/109 (6%) Query: 60 DDGNMTLRDCEELSQAISPILDVENIIEGH-YRLEVSSPGIDRPMVRKSDFLRWNGHVVA 118 + G++ L S A+S LD ++ Y LEVSSPG+DRP+ + R G +V Sbjct: 52 EPGDLDLDAVAAASTAVSEALDESGVLGEAPYTLEVSSPGVDRPLTTPRHWSRARGRLVR 111 Query: 119 CEIVLSSGDKQKLIGKIMGTSETGF--FLEKEKRGEKDMNELQIAISFD 165 + D L+ +++ E G LE + K + D Sbjct: 112 AVLT----DGTALLVRVVSVDEAGVHGTLEPQMVKGKPPRAKDVGAPRD 156 >gi|325971225|ref|YP_004247416.1| ribosome maturation factor rimP [Spirochaeta sp. Buddy] gi|324026463|gb|ADY13222.1| Ribosome maturation factor rimP [Spirochaeta sp. Buddy] Length = 166 Score = 64.7 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 58/148 (39%), Gaps = 13/148 (8%) Query: 30 QPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQ----AISPILDVEN 84 +P++ M V+I+ ++ N + + + + + +++ C ++ + + L + Sbjct: 16 EPLLNAMGIALVEINRVDRGNSVIVTMVIVAKETEVSIDHCAKVYRLAYPRMELQLGERD 75 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 + +LEVS+PG+ R +F + G + G I E Sbjct: 76 L-----QLEVSTPGLQRTFKDVYEFSLFTGKRARVYDTSKEA---WVSGIITQADEKTVQ 127 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARL 172 L + ++ +++ F + A+L Sbjct: 128 LAQVYIEDEKEMIDTMSVEFSVIQKAKL 155 >gi|50365107|ref|YP_053532.1| hypothetical protein Mfl291 [Mesoplasma florum L1] gi|81391892|sp|Q6F1H5|RIMP_MESFL RecName: Full=Ribosome maturation factor rimP gi|50363663|gb|AAT75648.1| unknown protein [Mesoplasma florum L1] Length = 164 Score = 64.7 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 71/161 (44%), Gaps = 10/161 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVER---DDGNMTLRDCEELSQA 75 + +I + + +++E + + +I+ + ++ +LQI VE + + ++ Sbjct: 6 SIKDEIQKIAESILKEYNLQIYEINNFFDFESDVLQILVEDITEPNKALDFDSIISSNEK 65 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S L+ + Y LEV+S GI++P+ K + ++ + E+ ++ G + Sbjct: 66 LSDALENFPGLSEPYMLEVASAGIEKPIRSKDELVKAVNSYIHVELNQEKNTSSEIEGIL 125 Query: 136 MGTS--ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + F + +G+K ++ ++ + AR V Sbjct: 126 LDFDVNKDTFRITYFLKGQKK----KVDFKYEQVKFARYAV 162 >gi|291513590|emb|CBK62800.1| Uncharacterized protein conserved in bacteria [Alistipes shahii WAL 8301] Length = 155 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 51/132 (38%), Gaps = 14/132 (10%) Query: 43 ISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRP 102 + +++ ++ D ++ + C ELS+A+ D + E + L V S GI Sbjct: 23 VECTSTPGNEIELTIDSDT-SVGIDACAELSRAVEAQFDRD---EEDFSLTVMSAGIGSE 78 Query: 103 MVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE------KEKRGEKDMN 156 + + + G + K++ K+ ++ G L E + +K + Sbjct: 79 LKSLRQYRKLAGKSAEVLLTSGV----KILAKLEEVTDEGITLSYEEKQAVEGKKKKQLV 134 Query: 157 ELQIAISFDSLL 168 ++ + FD + Sbjct: 135 KVTRSYPFDQIK 146 >gi|167751797|ref|ZP_02423924.1| hypothetical protein ALIPUT_00038 [Alistipes putredinis DSM 17216] gi|167660038|gb|EDS04168.1| hypothetical protein ALIPUT_00038 [Alistipes putredinis DSM 17216] Length = 155 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 50/152 (32%), Gaps = 16/152 (10%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 I+ + + V + +++ ++ D ++ + C ELS+AI D Sbjct: 5 TKITEIANAKLVGTDLFVVDCTCSPANE--VELLIDSDT-SVGIETCVELSRAIEAEFDR 61 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 + + L V+S GI + + + G V + K++ + + G Sbjct: 62 D---TEDFSLTVASAGIGSELKHLRQYRKLIGKPVEVLLKSGV----KILATLDEADQEG 114 Query: 143 FFLE------KEKRGEKDMNELQIAISFDSLL 168 L E + K + F + Sbjct: 115 LTLSYEEKQAVEGKKRKQTVRVTRRYPFSEIK 146 >gi|238783517|ref|ZP_04627539.1| hypothetical protein yberc0001_8610 [Yersinia bercovieri ATCC 43970] gi|238797554|ref|ZP_04641051.1| hypothetical protein ymoll0001_5240 [Yersinia mollaretii ATCC 43969] gi|238715572|gb|EEQ07562.1| hypothetical protein yberc0001_8610 [Yersinia bercovieri ATCC 43970] gi|238718551|gb|EEQ10370.1| hypothetical protein ymoll0001_5240 [Yersinia mollaretii ATCC 43969] Length = 66 Score = 63.5 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 8/71 (11%) Query: 103 MVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAI 162 M + R+ G V + ++ +++K G I + + + E Sbjct: 1 MFTAEHYTRYLGEEVTLVLRMAMQNRRKWQGIIKAVDGEMITVTVDGKDEV--------F 52 Query: 163 SFDSLLSARLI 173 + ++ A L+ Sbjct: 53 ALSNIQKANLV 63 >gi|294675007|ref|YP_003575623.1| hypothetical protein PRU_2369 [Prevotella ruminicola 23] gi|294474084|gb|ADE83473.1| conserved hypothetical protein [Prevotella ruminicola 23] Length = 155 Score = 63.2 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 22/156 (14%), Positives = 60/156 (38%), Gaps = 16/156 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 I ++ + ++ + V ++ + ++ I ++ DG + + DC LS+ + L E Sbjct: 7 IQTLTEEWLQGNEYFLVDVNFAADDRIV--IEIDHADG-VWIEDCAALSRFLQERLGEEL 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 V S G+ +P ++ G + D +K+ G + F Sbjct: 64 GEYELE---VGSAGLGQPFKVAQQYMNHIGDTLEV----LQADGKKVQGTLKAVDAPSFT 116 Query: 145 LEKEKRGEKDMNELQIAIS------FDSLLSARLIV 174 + +++ + + + + + D + A+ ++ Sbjct: 117 ITVQEKQKIEGKKRPVLVDVDKTYQMDEVKYAKYVL 152 >gi|51599051|ref|YP_073239.1| hypothetical protein BG0825 [Borrelia garinii PBi] gi|81609733|sp|Q65ZX4|RIMP_BORGA RecName: Full=Ribosome maturation factor rimP gi|51573622|gb|AAU07647.1| conserved hypothetical protein [Borrelia garinii PBi] Length = 145 Score = 62.8 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 67/152 (44%), Gaps = 18/152 (11%) Query: 24 DISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 ++ ++I+ + E ++ ++++ + +QI + D ++ + +L + I IL+ Sbjct: 10 EVYNLIKNLTERLNIEILEVNIFRNKNGGKIQIVLYSKDFSLGIDLLTDLHKMILLILEA 69 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 +E + LE+S+PGIDR + +F + G + + E G Sbjct: 70 S--LEYSFTLELSTPGIDRRIKSDREFQIFEGKKIKLMLDNEF--------------EEG 113 Query: 143 FFLEKEKRG-EKDMNELQIAISFDSLLSARLI 173 F LE + + ++ +S+ + ARL+ Sbjct: 114 FILESKSKSFIFKTESKELNVSYSDVKKARLV 145 >gi|172040526|ref|YP_001800241.1| hypothetical protein cur_0847 [Corynebacterium urealyticum DSM 7109] gi|226708097|sp|B1VGB7|RIMP_CORU7 RecName: Full=Ribosome maturation factor rimP gi|171851830|emb|CAQ04806.1| conserved hypothetical protein [Corynebacterium urealyticum DSM 7109] Length = 196 Score = 62.4 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 15/131 (11%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + ++ + +++ ++I V+ D+ L EE SQ I Sbjct: 5 LDEKLRALAADEAMKCGLDVEKLTFTRAGAKSSVKIAVDADERP-DLDLLEEASQLIGAA 63 Query: 80 LDVEN-----IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 D + Y LEV++PG+D P+ +F R G + G K G+ Sbjct: 64 FDAAEEAQQIDLGPSYTLEVTTPGLDFPLREARNFQRNIGRLANL----PGGGK----GR 115 Query: 135 IMGTSETGFFL 145 I + Sbjct: 116 IAAVENDEVAI 126 >gi|78187635|ref|YP_375678.1| hypothetical protein Plut_1781 [Chlorobium luteolum DSM 273] gi|78167537|gb|ABB24635.1| conserved hypothetical protein [Chlorobium luteolum DSM 273] Length = 191 Score = 62.4 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 69/174 (39%), Gaps = 18/174 (10%) Query: 14 RIFGDMGLAGDISSVIQPVIEE------MSFRSVQISLLEEK-NLLLQIFVERDDGNMTL 66 I + I ++Q ++E+ V +++ + +++ ++ D G + + Sbjct: 13 FIAMQGSIDSHIEGIVQNILEDSVGTKGEGVYLVAMTVKGSAVHRKIEVILDADSG-VRI 71 Query: 67 RDCEELSQAISPILDVENIIEG----HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV 122 C ++ I L+ + + G + L V SPG+ P+V + + R G ++ Sbjct: 72 DQCSFFARRIRERLEEDEALSGTMGEDFDLVVGSPGLGEPLVLRRQYGRHVGRLLRVWYR 131 Query: 123 LSSGDKQKLIGKIMGTS----ETGFFLEKEKRGEKDMNELQ--IAISFDSLLSA 170 + G + ++ G + S L+ + +K E + + D++ A Sbjct: 132 DTEGVEHEVAGHLQAVSLTEGGGSITLKPQTAKKKGRQEETEDMTLELDAVSRA 185 >gi|38234061|ref|NP_939828.1| hypothetical protein DIP1480 [Corynebacterium diphtheriae NCTC 13129] gi|51316647|sp|Q6NGM9|RIMP_CORDI RecName: Full=Ribosome maturation factor rimP gi|38200323|emb|CAE50008.1| Conserved hypothetical protein [Corynebacterium diphtheriae] Length = 184 Score = 62.0 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 65/166 (39%), Gaps = 20/166 (12%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 ++ ++ PV+ + + I + + K L+ + V+ D L E +S IS + D Sbjct: 9 LTELVTPVVAQHNMDLEGIRINKAGKKSLVAVSVDSDFRP-DLDQLELVSNQISEVFDAG 67 Query: 83 ----ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 E Y LEV +PG+D+P+ + R +VA E K+ + Sbjct: 68 EAAGELSFGAGYTLEVGTPGLDQPLASARRWRRNRHRLVALE----VEGKKSVERIGALN 123 Query: 139 SETGFFLEKEKRGEK---------DMNELQIAISFDSLLSARLIVT 175 + + ++RG+K + + + I F L +T Sbjct: 124 DDETAVIVVKRRGKKLVVRSVQLAENTQAVVEIEFAKPAEDELALT 169 >gi|119356206|ref|YP_910850.1| hypothetical protein Cpha266_0367 [Chlorobium phaeobacteroides DSM 266] gi|259585750|sp|A1BDE9|RIMP_CHLPD RecName: Full=Ribosome maturation factor rimP gi|119353555|gb|ABL64426.1| protein of unknown function DUF150 [Chlorobium phaeobacteroides DSM 266] Length = 173 Score = 62.0 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 60/149 (40%), Gaps = 13/149 (8%) Query: 34 EEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE----G 88 + V +S+ K +++ V+ D G + + C LS+ I L+VE + Sbjct: 20 KGEGVYLVSLSIKGSGKGTSIEVLVDTDTG-IRIDQCAFLSRRIRECLEVEEESDGMSGD 78 Query: 89 HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT-----SETGF 143 + L+V+SPG+ + ++ + + R G + G ++ G + Sbjct: 79 DFNLDVASPGLGKAIILQRQYARHVGRLFRVTFREEDGSMTEISGHLREILFPEEENASL 138 Query: 144 FLEK--EKRGEKDMNELQIAISFDSLLSA 170 +E +K+ K ++ + D ++ A Sbjct: 139 VIEPLGKKKAGKKVSSENRTLRLDRVIRA 167 >gi|313158655|gb|EFR58044.1| conserved hypothetical protein [Alistipes sp. HGB5] Length = 155 Score = 62.0 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 57/156 (36%), Gaps = 16/156 (10%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 I + ++ V + +++ ++ D ++ + C ELS+A+ D Sbjct: 4 TKKIIEAAERKLQGTDMFVVGCTCTPGNE--IELLIDSDT-SVAIEACAELSRAVEAEFD 60 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + E + L V+S GI + + + G V + K++ K+ + Sbjct: 61 RD---EEDFSLTVASAGIGSELKSLRQYRKLIGSTVEVLLNSGI----KMLAKLDAADDE 113 Query: 142 GFFLE------KEKRGEKDMNELQIAISFDSLLSAR 171 G + E + K + + +FD + S + Sbjct: 114 GITISYEEKQAVEGKKRKQLVTVTRRYAFDEIKSTK 149 >gi|18409217|ref|NP_564954.1| unknown protein [Arabidopsis thaliana] gi|13937141|gb|AAK50064.1|AF372924_1 At1g69210/F4N2_11 [Arabidopsis thaliana] gi|22137004|gb|AAM91347.1| At1g69210/F4N2_11 [Arabidopsis thaliana] gi|332196773|gb|AEE34894.1| uncharacterized protein [Arabidopsis thaliana] Length = 305 Score = 61.6 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 61/175 (34%), Gaps = 23/175 (13%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVER---DDGNMTLRDCEELSQAISPI 79 + S+ V+++ + + + +++ + G T+ + EE S+ Sbjct: 130 ERVLSIAAQVLKQSEKDLELFAFKTSPRGYIYVRLDKLSTEYGCPTMDELEEFSREFKKR 189 Query: 80 LD---VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI-G-- 133 LD E +I LEVSSPG +R + D R+ + V + ++ + G Sbjct: 190 LDDAGAEKVIPEDLALEVSSPGAERLLRVPEDLPRFKDMPMTVSYVEETNSRKAVKSGVF 249 Query: 134 --------------KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 K+ E K + + +L+I + F L + Sbjct: 250 LLESIDAESDNCVWKLADVRENRDPESKGRPLSRKQKDLRITLPFADHKKINLYL 304 >gi|68536222|ref|YP_250927.1| hypothetical protein jk1145 [Corynebacterium jeikeium K411] gi|91208000|sp|Q4JV48|RIMP_CORJK RecName: Full=Ribosome maturation factor rimP gi|68263821|emb|CAI37309.1| conserved hypothetical protein [Corynebacterium jeikeium K411] Length = 191 Score = 61.2 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 59/157 (37%), Gaps = 22/157 (14%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDD---GNMTLRDCEELSQAISP 78 + ++ ++ E I + + ++I V+ D L EELS+ +S Sbjct: 9 EQLEDSLRGLVNEFGLLIEGIKITKAGAKSAIRIAVDTADPRAERPDLDQLEELSREVSK 68 Query: 79 ILDVENIIEGH-----YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 LD Y LE+++PG+D P+V + ++R G +V +G ++ Sbjct: 69 HLDDAEAAGEMSFGAGYTLELTTPGVDFPLVEQRHWVRNIGRLVRL-----AGGVER--- 120 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 I L + + + ++ F + A Sbjct: 121 -IAQVEGEDVVLITPDKKQPSVRRVR----FADVAGA 152 >gi|119953576|ref|YP_945786.1| hypothetical protein BT0799 [Borrelia turicatae 91E135] gi|254806615|sp|A1R0M4|RIMP_BORT9 RecName: Full=Ribosome maturation factor rimP gi|119862347|gb|AAX18115.1| hypothetical cytosolic protein [Borrelia turicatae 91E135] Length = 143 Score = 61.2 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 68/151 (45%), Gaps = 17/151 (11%) Query: 23 GDISSVIQPVIEEMSFRSVQI-SLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 ++ ++I+ V +++ ++I + + +QI + + + + + +L + I L+ Sbjct: 8 SEVYNLIKNVTDQLGIEIIEINTFKKRDEGRIQIVLYKGN-DFGVDTLCDLHKMILLSLE 66 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 V +++ ++ LE+S+PGI+R + +F + G + + G I+ Sbjct: 67 V--VLKYNFSLEISTPGINRKIKSDREFKIFEGRKIKLMLDNDFE-----EGLILKAEAD 119 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 GF + + + +I I + + A+L Sbjct: 120 GFIFKTDTK--------EIRILYSDVKKAKL 142 >gi|189499376|ref|YP_001958846.1| hypothetical protein Cphamn1_0400 [Chlorobium phaeobacteroides BS1] gi|259585749|sp|B3ELN6|RIMP_CHLPB RecName: Full=Ribosome maturation factor rimP gi|189494817|gb|ACE03365.1| protein of unknown function DUF150 [Chlorobium phaeobacteroides BS1] Length = 180 Score = 61.2 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 59/133 (44%), Gaps = 12/133 (9%) Query: 49 KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE----NIIEGHYRLEVSSPGIDRPMV 104 + +++ E D G +++ C +++ + + N++ Y L VSSPGI P+ Sbjct: 43 PSRRVEVLAETDSG-ISVTRCMSIARWLRNAFEENEEIRNLVGEDYGLMVSSPGIGEPIQ 101 Query: 105 RKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS--ETG---FFLEKEK--RGEKDMNE 157 ++R GH++ + + ++ G+++ ET LE EK +G K Sbjct: 102 HARQYIRHKGHLLRVRYTDAGDAEHEVSGRLVEVEVVETTSPFIVLEPEKVSKGRKRERL 161 Query: 158 LQIAISFDSLLSA 170 + + + + SA Sbjct: 162 EPVRLELNRIKSA 174 >gi|260578922|ref|ZP_05846825.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC 43734] gi|258602896|gb|EEW16170.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC 43734] Length = 191 Score = 61.2 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 59/157 (37%), Gaps = 22/157 (14%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDD---GNMTLRDCEELSQAISP 78 + ++ ++ E I + + ++I V+ D L EELS+ +S Sbjct: 9 EQLEDSLRGLVNEFGLLIEGIKITKAGAKSAIRIAVDTADPRAERPDLDQLEELSREVSK 68 Query: 79 ILDV-----ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 LD E Y LE+++PG+D P+V + ++R G +V + ++ Sbjct: 69 HLDDAEASGEMSFGAGYTLELTTPGVDFPLVEQRHWVRNIGRLVRL-----ADGVER--- 120 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 I L + + + ++ F + A Sbjct: 121 -IAQVEGEDVVLITPDKKQPSVRRVR----FADVAGA 152 >gi|298706798|emb|CBJ29721.1| conserved unknown protein [Ectocarpus siliculosus] Length = 362 Score = 61.2 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 55/158 (34%), Gaps = 22/158 (13%) Query: 26 SSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN--------MTLRDCEELSQAIS 77 +++ ++ I + L++ V R +G+ + + + ++ Sbjct: 204 EKIVRDQVQACGLTCYDILWTFHR---LEVTVTRAEGDGPIEEAAYVDSDKLMQAIKGVN 260 Query: 78 PILD---VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 L+ E + G + L V++PG + F + G V + K++L GK Sbjct: 261 AALEAREEELFVLGRHELVVATPGAKDVLTTDKQFKAYKGFEVIVKAGGPFKKKRELKGK 320 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ + + K R + I + RL Sbjct: 321 LLERTFDELMIMKAGRK--------VRIPLALVDEVRL 350 >gi|289810679|ref|ZP_06541308.1| hypothetical protein Salmonellaentericaenterica_42532 [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 63 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 25/68 (36%), Gaps = 8/68 (11%) Query: 106 KSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFD 165 + R+ G VA + ++ +++K G I + E + E + Sbjct: 1 ADHYARFQGEEVALVLRMAVQNRRKWQGIIKAVDGEMITVTVEGKDEV--------FALS 52 Query: 166 SLLSARLI 173 ++ A L+ Sbjct: 53 NIQKANLV 60 >gi|187918653|ref|YP_001884219.1| hypothetical protein BH0799 [Borrelia hermsii DAH] gi|226708085|sp|B2S1E3|RIMP_BORHD RecName: Full=Ribosome maturation factor rimP gi|119861501|gb|AAX17296.1| hypothetical cytosolic protein [Borrelia hermsii DAH] Length = 143 Score = 60.5 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 68/151 (45%), Gaps = 17/151 (11%) Query: 23 GDISSVIQPVIEEMSFRSVQI-SLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 ++ ++I+ V + + ++I + + +QI + + D + + +L + I +L+ Sbjct: 8 SEVYNLIKNVTDRLGIEIIEINTFRKRGEGRVQIVLYKGD-DFGVDTLCDLHKMI--LLN 64 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 +E +++ ++ LE+S+PGI+R + +F + G + + G I+ Sbjct: 65 LEAVLKYNFSLEISTPGINRKIKSDREFKIFEGKKIKLMLDNDFE-----EGFILKAGAD 119 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 F + + + ++ + + + A+L Sbjct: 120 SFIFKTDNK--------EVKVLYSDVKKAKL 142 >gi|91208390|sp|Q3B1Z6|RIMP_PELLD RecName: Full=Ribosome maturation factor rimP Length = 176 Score = 60.5 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 68/168 (40%), Gaps = 18/168 (10%) Query: 20 GLAGDISSVIQPVIEE------MSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEEL 72 + I ++Q ++E+ V +++ + +++ ++ D G + + C Sbjct: 4 SIDSHIEGIVQNILEDSVGTKGEGVYLVAMTVKGSAVHRKIEVILDADSG-VRIDQCSFF 62 Query: 73 SQAISPILDVENIIEG----HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 ++ I L+ + + G + L V SPG+ P+V + + R G ++ + G + Sbjct: 63 ARRIRERLEEDEALSGTMGEDFDLVVGSPGLGEPLVLRRQYGRHVGRLLRVWYRDTEGVE 122 Query: 129 QKLIGKIMGTS----ETGFFLEKEKRGEKDMNELQ--IAISFDSLLSA 170 ++ G + S L+ + +K E + + D++ A Sbjct: 123 HEVAGHLQAVSLTEGGGSITLKPQTAKKKGRQEETEDMTLELDAVSRA 170 >gi|219685672|ref|ZP_03540486.1| conserved hypothetical protein [Borrelia garinii Far04] gi|219672788|gb|EED29813.1| conserved hypothetical protein [Borrelia garinii Far04] Length = 145 Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 66/152 (43%), Gaps = 18/152 (11%) Query: 24 DISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 ++ ++I+ + E ++ ++++ + +QI + + ++ + +L + I IL+ Sbjct: 10 EVYNLIKNLTERLNIEILEVNIFRNKNGGKIQIVLYSKNFSLGIDLLTDLHKIILLILEA 69 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 +E + LE+S+PGIDR + +F + G + + E G Sbjct: 70 S--LEYSFTLELSTPGIDRRIKSDREFQIFEGKKIKLMLDNEF--------------EEG 113 Query: 143 FFLEKEKRG-EKDMNELQIAISFDSLLSARLI 173 F LE + + ++ + + + ARL+ Sbjct: 114 FILESKSKSFIFKTESKELNVFYSDVKKARLV 145 >gi|194335548|ref|YP_002017342.1| protein of unknown function DUF150 [Pelodictyon phaeoclathratiforme BU-1] gi|259586174|sp|B4SCE5|RIMP_PELPB RecName: Full=Ribosome maturation factor rimP gi|194308025|gb|ACF42725.1| protein of unknown function DUF150 [Pelodictyon phaeoclathratiforme BU-1] Length = 173 Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 61/130 (46%), Gaps = 12/130 (9%) Query: 21 LAGDISSVIQPVIEE------MSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELS 73 + I++ + V+ E + I + + ++I ++ DDG + + C +S Sbjct: 1 MQERINNCVTQVLAESAGTRGEGAYLIDIKVKGKGSGRKIEILMDADDG-IRIHQCAYIS 59 Query: 74 QAISPILDVEN----IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ 129 + + ++ ++ ++ ++ L VSSPG+ P++ ++R G ++ S+GD Sbjct: 60 RRVRERIEGDDDLLELVGENFDLMVSSPGLGEPIIIPRQYIRHVGKLLQVTYADSNGDPV 119 Query: 130 KLIGKIMGTS 139 +L+G + S Sbjct: 120 ELVGHLQEVS 129 >gi|219684915|ref|ZP_03539856.1| conserved hypothetical protein [Borrelia garinii PBr] gi|219671653|gb|EED28709.1| conserved hypothetical protein [Borrelia garinii PBr] Length = 145 Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 66/152 (43%), Gaps = 18/152 (11%) Query: 24 DISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 ++ ++I+ + E ++ ++++ + +QI + + ++ + +L + I IL+ Sbjct: 10 EVYNLIKNLTERLNIEILEVNIFRNKNGGKIQIVLYSKNFSLGIDLLTDLHKMILLILEA 69 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 +E + LE+S+PGIDR + +F + G + + E G Sbjct: 70 S--LEYSFTLELSTPGIDRRIKSDREFQIFEGKKIKLMLDNEF--------------EEG 113 Query: 143 FFLEKEKRG-EKDMNELQIAISFDSLLSARLI 173 F LE + + ++ + + + ARL+ Sbjct: 114 FILESKSKSFIFKTESKELNVFYSDVKKARLV 145 >gi|319951027|ref|ZP_08024891.1| ribosome maturation protein RimP [Dietzia cinnamea P4] gi|319435307|gb|EFV90563.1| ribosome maturation protein RimP [Dietzia cinnamea P4] Length = 181 Score = 59.7 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 58/165 (35%), Gaps = 14/165 (8%) Query: 33 IEEMSFRSVQI-SLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYR 91 + + I + I V+ D G ++L D +LS + P+ + + Sbjct: 15 VSDRGLDLEDIREDARSSAWRVTIVVDGDAG-VSLDDLADLSTDLDPLAEGWGGPDRPVT 73 Query: 92 LEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRG 151 LEV+S G+D P+ + + R G V V + + ++ E + Sbjct: 74 LEVTSRGVDAPLEQPRHWRRARGRQVDITYVQGAKGPAR--ARVGDLDEGAGVVRLVSGA 131 Query: 152 EKDMNELQIAISFDSLLSA------RLIVTDELLRASLNNYGSYA 190 ++ +A+ D + A R DEL L+ G Sbjct: 132 GREKKVEPVAL--DQVAHAVIRVEFRPAPQDEL--DLLSEPGDPG 172 >gi|34540098|ref|NP_904577.1| hypothetical protein PG0253 [Porphyromonas gingivalis W83] gi|51316749|sp|Q7MXE6|RIMP_PORGI RecName: Full=Ribosome maturation factor rimP gi|34396409|gb|AAQ65476.1| conserved hypothetical protein [Porphyromonas gingivalis W83] Length = 152 Score = 59.7 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 54/137 (39%), Gaps = 16/137 (11%) Query: 40 SVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGI 99 V++++ +L+++ + G + + +C LS+ I +D + IE Y LEV S G+ Sbjct: 22 LVEVAIHPGNRILVEL--DSAQG-VCIDECVALSRHIESQVDRD--IED-YELEVGSTGL 75 Query: 100 DRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK------EKRGEK 153 P+ + ++ + ++ G+++ + LE E K Sbjct: 76 TSPLKVMRQWENCIDSELSVLLT---NGMKE-TGRLITVAPEAIKLEVVRMVKPEGAKRK 131 Query: 154 DMNELQIAISFDSLLSA 170 ++ I + A Sbjct: 132 KPETQELTIVMADIKQA 148 >gi|15595144|ref|NP_212933.1| hypothetical protein BB0799 [Borrelia burgdorferi B31] gi|226320844|ref|ZP_03796396.1| conserved hypothetical protein [Borrelia burgdorferi 29805] gi|2688749|gb|AAC67155.1| conserved hypothetical protein [Borrelia burgdorferi B31] gi|226233710|gb|EEH32439.1| conserved hypothetical protein [Borrelia burgdorferi 29805] Length = 162 Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 68/161 (42%), Gaps = 18/161 (11%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELS 73 + ++ ++I+ + ++ ++I+ + N +QI + + ++ + +L Sbjct: 18 LIKYFDKNNEVFNLIKDLTGRLNVEILEINIFRNKNNGKIQIVLYSKNFSLDIDFLTDLH 77 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 + I IL+ ++ + LE+S+PGIDR + +F + G + + Sbjct: 78 KMILLILEAN--LKYGFTLELSTPGIDRKIKSDREFKIFEGKKIKLMLDNEF-------- 127 Query: 134 KIMGTSETGFFLEKEKRG-EKDMNELQIAISFDSLLSARLI 173 E GF LE + + + ++ + + + ARL+ Sbjct: 128 ------EEGFILESKPKSFIFKTDSKEVNVFYSDVKKARLV 162 >gi|216263349|ref|ZP_03435344.1| conserved hypothetical protein [Borrelia afzelii ACA-1] gi|215980193|gb|EEC21014.1| conserved hypothetical protein [Borrelia afzelii ACA-1] Length = 145 Score = 59.3 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 67/152 (44%), Gaps = 18/152 (11%) Query: 24 DISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 ++ ++I+ + E ++ ++I+ + +QI + + ++ + +L + I IL+ Sbjct: 10 EVYNLIKNLTERLNVEILEINIFRNKNGGKIQIVLYSKNFSLGIDLMTDLHKMILLILEA 69 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 ++ + LE+S+PGIDR + +F + G + + E G Sbjct: 70 N--LKYSFILELSTPGIDRKIKSDKEFQIFEGKKIKLMLDNEF--------------EEG 113 Query: 143 FFLEKEKRG-EKDMNELQIAISFDSLLSARLI 173 F LE + + + ++ + + + ARL+ Sbjct: 114 FILEAKSKSFIFKTDNKELNVFYSDVKKARLV 145 >gi|188994217|ref|YP_001928469.1| hypothetical protein PGN_0353 [Porphyromonas gingivalis ATCC 33277] gi|259586179|sp|B2RHM7|RIMP_PORG3 RecName: Full=Ribosome maturation factor rimP gi|188593897|dbj|BAG32872.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC 33277] Length = 152 Score = 59.3 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 22/137 (16%), Positives = 52/137 (37%), Gaps = 16/137 (11%) Query: 40 SVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGI 99 V++++ +L+++ + G + + +C LS+ I +D + Y LEV S G+ Sbjct: 22 LVEVAIHPGNRILVEL--DSAQG-VCIDECVALSRHIESQVDRD---LEDYELEVGSTGL 75 Query: 100 DRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK------EKRGEK 153 P+ + ++ + ++ G+++ + LE E K Sbjct: 76 TSPLKVMRQWENCIDSELSVLLT---NGMKE-TGRLITVAPEAIKLEVVRMVKPEGAKRK 131 Query: 154 DMNELQIAISFDSLLSA 170 ++ I + A Sbjct: 132 KPETQELTIVMADIKQA 148 >gi|224534153|ref|ZP_03674733.1| conserved hypothetical protein [Borrelia spielmanii A14S] gi|224514578|gb|EEF84892.1| conserved hypothetical protein [Borrelia spielmanii A14S] Length = 145 Score = 59.3 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 62/151 (41%), Gaps = 16/151 (10%) Query: 24 DISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 ++ ++I+ + E ++ ++I+ + +QI + + ++ + +L + I IL+ Sbjct: 10 EVYNLIKNLTERLNVEILEINIFRNKNGGKIQIVLYSKNFSLGVDLMTDLHKMILLILEA 69 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 + + LE+S+PGIDR + +F + G + + E Sbjct: 70 N--FKYSFTLELSTPGIDRRIKSDREFQIFEGKKIKLMLDN-------------EFEEGF 114 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 K K + ++ + + + ARL+ Sbjct: 115 ILKSKSKSFIFKTDSKELNVFYSDVKKARLV 145 >gi|224531664|ref|ZP_03672296.1| conserved hypothetical protein [Borrelia valaisiana VS116] gi|224511129|gb|EEF81535.1| conserved hypothetical protein [Borrelia valaisiana VS116] Length = 145 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 65/151 (43%), Gaps = 16/151 (10%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDV 82 ++ ++I+ + E + ++I++ + KN +QI + + ++ + +L + I IL+ Sbjct: 10 EVYNLIKNLTERANIEILEINVFKNKNSGKIQIVLYSKNFSLGIDLLTDLHKMILLILEA 69 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 ++ + LE+S+PGI+R + +F + G + + E Sbjct: 70 N--LKYSFTLELSTPGINRKIKSDKEFQIFEGKKIKLMLDN-------------EFEEGL 114 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 K K + ++ + + + ARL+ Sbjct: 115 ILKSKSKSFIFKTDSKELNVFYSDVKKARLV 145 >gi|216264912|ref|ZP_03436904.1| conserved hypothetical protein [Borrelia burgdorferi 156a] gi|218249670|ref|YP_002375298.1| hypothetical protein BbuZS7_0829 [Borrelia burgdorferi ZS7] gi|224532422|ref|ZP_03673050.1| conserved hypothetical protein [Borrelia burgdorferi WI91-23] gi|226321264|ref|ZP_03796792.1| conserved hypothetical protein [Borrelia burgdorferi Bol26] gi|226708090|sp|B7J0P5|RIMP_BORBZ RecName: Full=Ribosome maturation factor rimP gi|215981385|gb|EEC22192.1| conserved hypothetical protein [Borrelia burgdorferi 156a] gi|218164858|gb|ACK74919.1| conserved hypothetical protein [Borrelia burgdorferi ZS7] gi|224512645|gb|EEF83018.1| conserved hypothetical protein [Borrelia burgdorferi WI91-23] gi|226233296|gb|EEH32047.1| conserved hypothetical protein [Borrelia burgdorferi Bol26] Length = 145 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 67/152 (44%), Gaps = 18/152 (11%) Query: 24 DISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 ++ ++I+ + ++ ++I+ + N +QI + + ++ + +L + I IL+ Sbjct: 10 EVFNLIKDLTGRLNVEILEINIFRNKNNGKIQIVLYSKNFSLDIDFLTDLHKIILLILEA 69 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 ++ + LE+S+PGIDR + +F + G + + E G Sbjct: 70 N--LKYGFTLELSTPGIDRKIKSDREFKIFEGKKIKLMLDNEF--------------EEG 113 Query: 143 FFLEKEKRG-EKDMNELQIAISFDSLLSARLI 173 F LE + + + ++ + + + ARL+ Sbjct: 114 FILESKPKSFIFKTDSKEVNVFYSDVKKARLV 145 >gi|195941990|ref|ZP_03087372.1| hypothetical protein Bbur8_03844 [Borrelia burgdorferi 80a] gi|221217609|ref|ZP_03589078.1| conserved hypothetical protein [Borrelia burgdorferi 72a] gi|223889333|ref|ZP_03623920.1| conserved hypothetical protein [Borrelia burgdorferi 64b] gi|224533432|ref|ZP_03674025.1| conserved hypothetical protein [Borrelia burgdorferi CA-11.2a] gi|225549379|ref|ZP_03770351.1| conserved hypothetical protein [Borrelia burgdorferi 94a] gi|225550239|ref|ZP_03771198.1| conserved hypothetical protein [Borrelia burgdorferi 118a] gi|259016310|sp|O51739|RIMP_BORBU RecName: Full=Ribosome maturation factor rimP gi|221192555|gb|EEE18773.1| conserved hypothetical protein [Borrelia burgdorferi 72a] gi|223885254|gb|EEF56357.1| conserved hypothetical protein [Borrelia burgdorferi 64b] gi|224513394|gb|EEF83752.1| conserved hypothetical protein [Borrelia burgdorferi CA-11.2a] gi|225369107|gb|EEG98561.1| conserved hypothetical protein [Borrelia burgdorferi 118a] gi|225370007|gb|EEG99448.1| conserved hypothetical protein [Borrelia burgdorferi 94a] gi|312149294|gb|ADQ29365.1| conserved hypothetical protein [Borrelia burgdorferi N40] Length = 145 Score = 58.5 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 67/152 (44%), Gaps = 18/152 (11%) Query: 24 DISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 ++ ++I+ + ++ ++I+ + N +QI + + ++ + +L + I IL+ Sbjct: 10 EVFNLIKDLTGRLNVEILEINIFRNKNNGKIQIVLYSKNFSLDIDFLTDLHKMILLILEA 69 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 ++ + LE+S+PGIDR + +F + G + + E G Sbjct: 70 N--LKYGFTLELSTPGIDRKIKSDREFKIFEGKKIKLMLDNEF--------------EEG 113 Query: 143 FFLEKEKRG-EKDMNELQIAISFDSLLSARLI 173 F LE + + + ++ + + + ARL+ Sbjct: 114 FILESKPKSFIFKTDSKEVNVFYSDVKKARLV 145 >gi|218194896|gb|EEC77323.1| hypothetical protein OsI_15994 [Oryza sativa Indica Group] Length = 327 Score = 58.5 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 6/109 (5%) Query: 27 SVIQPVIEEMSFRSVQISLLEEKNLLLQIFVER---DDGNMTLRDCEELSQAISPILDVE 83 ++ + V + NL +++ +E+ G+ T+ D E + A +D Sbjct: 151 ALAEEVSNSFDGDLKIYAFKTAANLTIRVRIEKMSTRYGSPTIDDIEAFTIAYRAKMDDA 210 Query: 84 NI---IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ 129 I + LEVSSPG++R + D R+ + ++S + Sbjct: 211 ESAGRIPQNISLEVSSPGVERVIRIPDDLERFKERAMYVRYTITSDGGE 259 >gi|116310789|emb|CAH67581.1| H0315A08.11 [Oryza sativa Indica Group] Length = 326 Score = 58.5 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 6/109 (5%) Query: 27 SVIQPVIEEMSFRSVQISLLEEKNLLLQIFVER---DDGNMTLRDCEELSQAISPILDVE 83 ++ + V + NL +++ +E+ G+ T+ D E + A +D Sbjct: 150 ALAEEVSNSFDGDLKIYAFKTAANLTIRVRIEKMSTRYGSPTIDDIEAFTIAYRAKMDDA 209 Query: 84 NI---IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ 129 I + LEVSSPG++R + D R+ + ++S + Sbjct: 210 ESAGRIPQNISLEVSSPGVERVIRIPDDLERFKERAMYVRYTITSDGGE 258 >gi|224062938|ref|XP_002300938.1| predicted protein [Populus trichocarpa] gi|222842664|gb|EEE80211.1| predicted protein [Populus trichocarpa] Length = 313 Score = 58.5 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 6/108 (5%) Query: 27 SVIQPVIEEMSFRSVQISLLEEKNLLLQIFVER---DDGNMTLRDCEELSQAISPILDVE 83 + + V + N +Q+ +ER G+ + D E S LD Sbjct: 139 KIAEEVCSTFDRELEIYAFKTLSNSTIQVRIERLTNKSGSPNMEDIEAFSTTYRARLDEA 198 Query: 84 NI---IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 + I + LEVSSPG++R + D R+ + + V + K Sbjct: 199 ELAKTITENITLEVSSPGVERVVRIPEDLDRFKDRAMYVKYVNEADAK 246 >gi|111115634|ref|YP_710252.1| hypothetical protein BAPKO_0852 [Borrelia afzelii PKo] gi|122956310|sp|Q0SM52|RIMP_BORAP RecName: Full=Ribosome maturation factor rimP gi|110890908|gb|ABH02076.1| hypothetical protein BAPKO_0852 [Borrelia afzelii PKo] Length = 145 Score = 58.1 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 67/152 (44%), Gaps = 18/152 (11%) Query: 24 DISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 ++ ++I+ + E ++ ++I+ + +QI + + ++ + +L + I IL+ Sbjct: 10 EVYNLIKNLTERLNVEILEINIFRNKNGGKIQIVLYSKNFSLGIDLMTDLHKMILLILEA 69 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 ++ + LE+S+PGIDR + +F + G + + E G Sbjct: 70 N--LKYSFILELSTPGIDRRIKSDKEFQIFEGKKIKLMLDNEF--------------EEG 113 Query: 143 FFLEKEKRG-EKDMNELQIAISFDSLLSARLI 173 F LE + + + ++ + + + ARL+ Sbjct: 114 FILEAKSKSFIFKTDSKELNVFYSDVKKARLV 145 >gi|110597608|ref|ZP_01385893.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031] gi|110340728|gb|EAT59205.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031] Length = 173 Score = 57.8 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 62/148 (41%), Gaps = 13/148 (8%) Query: 35 EMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENI----IEGH 89 V + + ++ ++I V+ DD + + C LS+ + +L+ + + Sbjct: 21 GEGAYLVDLKVKGPQRARKIEILVD-DDSGVRIDQCAWLSRRLRELLESDEELLALVGED 79 Query: 90 YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG------- 142 + + VSSPG+ P++ ++R G ++ +++L G+++ S + Sbjct: 80 FEITVSSPGLGEPLMLHRQYVRHCGKIMEVTYTDEDAVQRELKGRLLRVSLSEESRPHIV 139 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSA 170 EK ++ N ++ + D + A Sbjct: 140 IMPEKNRKKGSTPNREEVTLYLDQVNRA 167 >gi|115458524|ref|NP_001052862.1| Os04g0438300 [Oryza sativa Japonica Group] gi|38344074|emb|CAE02749.2| OSJNBa0006B20.18 [Oryza sativa Japonica Group] gi|113564433|dbj|BAF14776.1| Os04g0438300 [Oryza sativa Japonica Group] gi|215694700|dbj|BAG89891.1| unnamed protein product [Oryza sativa Japonica Group] gi|222628915|gb|EEE61047.1| hypothetical protein OsJ_14901 [Oryza sativa Japonica Group] Length = 327 Score = 57.8 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 6/109 (5%) Query: 27 SVIQPVIEEMSFRSVQISLLEEKNLLLQIFVER---DDGNMTLRDCEELSQAISPILDVE 83 ++ + V + NL +++ +E+ G+ T+ D E + A +D Sbjct: 151 ALAEEVSNSFDGDLKIYAFKTAANLTIRVRIEKMSTRYGSPTIDDIEAFTIAYRAKIDDA 210 Query: 84 NI---IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ 129 I + LEVSSPG++R + D R+ + ++S + Sbjct: 211 ESAGRIPQNISLEVSSPGVERVIRIPDDLERFKERAMYVRYTITSDGGE 259 >gi|332830403|gb|EGK03031.1| hypothetical protein HMPREF9455_01281 [Dysgonomonas gadei ATCC BAA-286] Length = 155 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 13/106 (12%) Query: 69 CEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 C LS+ I LD E + LEV S G+ P + + G+ V Sbjct: 48 CIALSRDIESRLDRE---AEDFELEVGSAGVTSPFKIPRQYKKNEGNEVEVLTKA----G 100 Query: 129 QKLIGKIMGTSETGFFLEK------EKRGEKDMNELQIAISFDSLL 168 QKL G + + GF + E +K E ++ ++D + Sbjct: 101 QKLSGVLKTSDNNGFVITITKMVKPEGAKKKTALEEDLSFAYDEVK 146 >gi|81428863|ref|YP_395863.1| hypothetical protein LSA1252 [Lactobacillus sakei subsp. sakei 23K] gi|78610505|emb|CAI55556.1| Hypotehtical protein [Lactobacillus sakei subsp. sakei 23K] Length = 70 Score = 57.0 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 9/72 (12%), Positives = 27/72 (37%), Gaps = 4/72 (5%) Query: 103 MVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAI 162 M +++DF G + + + ++ G + + L + + + ++ Sbjct: 1 MKKEADFQNALGEYIHISLYQAVDGEKIYQGILKALDQETLTLAIKIKTRQK----EVTF 56 Query: 163 SFDSLLSARLIV 174 + + ARL + Sbjct: 57 NRKEIAKARLAI 68 >gi|225551682|ref|ZP_03772626.1| conserved hypothetical protein [Borrelia sp. SV1] gi|225371709|gb|EEH01135.1| conserved hypothetical protein [Borrelia sp. SV1] Length = 145 Score = 57.0 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 67/152 (44%), Gaps = 18/152 (11%) Query: 24 DISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 ++ ++I+ + ++ ++I+ + N ++I + + ++ + +L + I IL+ Sbjct: 10 EVFNLIKDLTGRLNVEILEINIFRNKNNGKIKIVLYSKNFSLDIDFLTDLHKIILLILEA 69 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 ++ + LE+S+PGIDR + +F + G + + E G Sbjct: 70 N--LKYGFTLELSTPGIDRKIKSDREFKIFEGKKIKLMLDNEF--------------EEG 113 Query: 143 FFLEKEKRG-EKDMNELQIAISFDSLLSARLI 173 F LE + + + ++ + + + ARL+ Sbjct: 114 FILESKPKSFIFKTDSKEVNVFYSDVKKARLV 145 >gi|297842485|ref|XP_002889124.1| hypothetical protein ARALYDRAFT_476875 [Arabidopsis lyrata subsp. lyrata] gi|297334965|gb|EFH65383.1| hypothetical protein ARALYDRAFT_476875 [Arabidopsis lyrata subsp. lyrata] Length = 318 Score = 57.0 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 62/170 (36%), Gaps = 27/170 (15%) Query: 27 SVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDD---GNMTLRDCEELSQAISPILDVE 83 ++ + V E + N +Q+ +ER G+ T+ D E S L Sbjct: 148 ALAEKVCESFDGDLGIYAFKTLPNSTIQVRIERLTNKFGSPTMEDIEAYSTIYRAKLAEA 207 Query: 84 NI---IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG----KIM 136 + I + LEVSSPG++R + D R+ + + + G +++ Sbjct: 208 GLAKSIPDNISLEVSSPGVERVVRIPQDLDRYKDRPMYVRYT---NEDTETEGDGIFRLI 264 Query: 137 GTS-----------ETGFFLEKEKRGE---KDMNELQIAISFDSLLSARL 172 +T EK +G K E ++ +F+SL RL Sbjct: 265 SFDVEAKSCIWGIADTRVNREKAGKGRPLSKKQREWRLETAFESLRLVRL 314 >gi|303283206|ref|XP_003060894.1| predicted protein [Micromonas pusilla CCMP1545] gi|226457245|gb|EEH54544.1| predicted protein [Micromonas pusilla CCMP1545] Length = 332 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 55/149 (36%), Gaps = 23/149 (15%) Query: 46 LEEKNLLLQIFVERDD-GNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMV 104 +E + + + +D G+ TL E+S+ + +L+ EN E LEV+SPG +R + Sbjct: 185 VERRRVYASVDAVKDKFGSPTLDQLGEVSRKFNALLEEENFPEDV-ALEVASPGAERALR 243 Query: 105 RKSDFLRWNGHVVACEI-------------------VLSSGDKQKLIGKIMGTSETGFFL 145 D R+ + V GD + K+ E Sbjct: 244 LPDDLPRFRNLTMKVTYAAAAEDDGAEGTRTRVMDVVDVDGDAVEF--KLADVPENRPQA 301 Query: 146 EKEKRGEKDMNELQIAISFDSLLSARLIV 174 +K + K E ++ I + A L + Sbjct: 302 KKGQGMNKKQREWRLKIPIADVAKANLFI 330 >gi|30699240|ref|NP_849898.1| unknown protein [Arabidopsis thaliana] gi|62320812|dbj|BAD93751.1| hypothetical protein [Arabidopsis thaliana] gi|110742469|dbj|BAE99153.1| hypothetical protein [Arabidopsis thaliana] gi|114050645|gb|ABI49472.1| At1g77122 [Arabidopsis thaliana] gi|332197817|gb|AEE35938.1| uncharacterized protein [Arabidopsis thaliana] Length = 323 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 61/170 (35%), Gaps = 27/170 (15%) Query: 27 SVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDD---GNMTLRDCEELSQAISPILDVE 83 ++ V E + N +Q+ +ER G+ T+ D E S L Sbjct: 153 ALAVKVCESFDGDLGIYAFKTLPNSTIQVRIERLTNKFGSPTMEDIEAFSTIYRAKLAEA 212 Query: 84 NI---IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG----KIM 136 + I + LEVSSPG++R + D R+ + + + G +++ Sbjct: 213 ELAKSIPDNISLEVSSPGVERVVRIPQDLDRYKDRPMYVRYT---NEDTETEGDGIFRLV 269 Query: 137 GTSETG---------FFLEKEKRGE-----KDMNELQIAISFDSLLSARL 172 + +EK G+ K E ++ +F+SL RL Sbjct: 270 SFDVEAKICIWGIADIRVNREKAGKGRPLSKKQREWRLETAFESLRLVRL 319 >gi|168032332|ref|XP_001768673.1| predicted protein [Physcomitrella patens subsp. patens] gi|162680172|gb|EDQ66611.1| predicted protein [Physcomitrella patens subsp. patens] Length = 586 Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 39/93 (41%), Gaps = 8/93 (8%) Query: 28 VIQPVIEEM-SFRSVQISLLEEKNLLLQIFVERDD---GNMTLRDCEELSQAISPILD-- 81 + + + + +E ++++ V++ G+ ++ + ++ S S LD Sbjct: 414 LAEETVAQFDGLEIFAFKASKESG-IIRVRVDKLSDKYGSPSMDEIQKFSSTYSKALDKA 472 Query: 82 -VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWN 113 E + LEVSSPG +R + D R+ Sbjct: 473 GEEKTVPDDLALEVSSPGAERVVRIPQDLERFK 505 >gi|255570398|ref|XP_002526158.1| conserved hypothetical protein [Ricinus communis] gi|223534535|gb|EEF36234.1| conserved hypothetical protein [Ricinus communis] Length = 306 Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 6/103 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD---DGNMTLRDCEELSQAISPIL 80 ++ + + V + + N +Q+ +ER G+ T+ D E S L Sbjct: 129 EVLRLAEEVCKSFDGELKLYAFKTLSNSTIQVRIERLTNRSGSPTMEDIEAFSTTYRTWL 188 Query: 81 DVENI---IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 D + I + LEVSSPG++R + + R+ + + Sbjct: 189 DEAELAKTIPTNIALEVSSPGVERIVRIPEELDRFKDRSMYVK 231 >gi|213421301|ref|ZP_03354367.1| hypothetical protein Salmonentericaenterica_27659 [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 58 Score = 55.1 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 8/63 (12%) Query: 111 RWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 R+ G VA + ++ +++K G I + E + E + ++ A Sbjct: 1 RFQGEEVALVLRMAVQNRRKWQGIIKAVDGEMITVTVEGKDEV--------FALSNIQKA 52 Query: 171 RLI 173 L+ Sbjct: 53 NLV 55 >gi|203288227|ref|YP_002223242.1| hypothetical protein BRE_810 [Borrelia recurrentis A1] gi|259585731|sp|B5RQD7|RIMP_BORRA RecName: Full=Ribosome maturation factor rimP gi|201085447|gb|ACH95021.1| uncharacterized conserved protein [Borrelia recurrentis A1] Length = 143 Score = 54.3 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 66/151 (43%), Gaps = 17/151 (11%) Query: 23 GDISSVIQPVIEEMSFRSVQI-SLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 +I +I+ V + ++I + + +QI + + D N ++ +L + I +L Sbjct: 8 SEIYDLIKDVTYLLGISIIEINTFRKRDEFKIQIVLYKSD-NFSVDMLCDLHKMI--LLK 64 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 +E +++ + LE+S+PGI+R + +F + G + + G I+ Sbjct: 65 LEAVLKYNVSLEISTPGINRKIKSDREFKIFEGKKIKLMLNNDFE-----EGFILRAERD 119 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 GF + E + + I + ++ A+L Sbjct: 120 GFIFKTEYKK--------VKILYSNVKKAKL 142 >gi|203284695|ref|YP_002222435.1| hypothetical protein BDU_807 [Borrelia duttonii Ly] gi|259585730|sp|B5RMZ3|RIMP_BORDL RecName: Full=Ribosome maturation factor rimP gi|201084138|gb|ACH93729.1| uncharacterized conserved protein [Borrelia duttonii Ly] Length = 143 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 68/151 (45%), Gaps = 17/151 (11%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQAISPILD 81 +I +I+ V + ++I+ ++ +QI + + D N ++ +L + I +L Sbjct: 8 SEIYDLIKDVTYLLGISIIEINTFRRRDEFKIQIVLYKSD-NFSVDMLCDLHKMI--LLK 64 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 +E +++ + LE+S+PGI+R + +F + G + + G I+ Sbjct: 65 LEAVLKYNVSLEISTPGINRKIKSDREFKIFEGKKIKLMLNNDFE-----EGFILRAERD 119 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 GF + E + ++ I + ++ A+L Sbjct: 120 GFIFKTEYK--------EVKILYSNVKKAKL 142 >gi|195649031|gb|ACG43983.1| hypothetical protein [Zea mays] Length = 319 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 59/153 (38%), Gaps = 25/153 (16%) Query: 45 LLEEKNLLLQIFVER---DDGNMTLRDCEELSQAISPILDVENI---IEGHYRLEVSSPG 98 NL +++ +E+ G+ T+ D E + A LD I + LEVSSPG Sbjct: 163 FKTAANLTIRVRIEKMSTRYGSPTIDDIEAYTIAYRAKLDEAESAGKIPKNISLEVSSPG 222 Query: 99 IDRPMVRKSDFLRWNGHVVACEIVLSSGDK---QKLIGKIM-------------GTSETG 142 ++R + + R+ + +S + Q+ G + G ++ Sbjct: 223 VERVIRIPEELERFKERAMYVRYTTASDEATTPQEGDGVLTLISYDMDLRECTWGIADVK 282 Query: 143 FFLEKEKRGE---KDMNELQIAISFDSLLSARL 172 ++ +G K E ++ F+SL RL Sbjct: 283 INRQQSGKGRPLSKKQREWRLQTPFESLKLVRL 315 >gi|313665235|ref|YP_004047106.1| hypothetical protein MSB_A0351 [Mycoplasma leachii PG50] gi|312949483|gb|ADR24079.1| conserved hypothetical protein [Mycoplasma leachii PG50] Length = 164 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 56/129 (43%), Gaps = 4/129 (3%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVE---RDDGNMTLRDCEELSQA 75 + I+ ++ +E ++ + +I+ L+E +N ++QI VE + + + + + Sbjct: 6 SIKFQINELVNKELEVLNLKVYEINNLKEFENDMIQILVEDALQANKPLDFDILIKANDL 65 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +D Y LE+SS GI++ + + + ++ V ++ ++ G + Sbjct: 66 VSNKIDQIIKTNQKYLLEISSSGIEKQIRSQEELIKALDQWVYVQLNNEIKKVKEFEGYL 125 Query: 136 MGTSETGFF 144 + Sbjct: 126 TKYNNDTDT 134 >gi|42560897|ref|NP_975348.1| hypothetical protein MSC_0353 [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|331703355|ref|YP_004400042.1| hypothetical protein MLC_3350 [Mycoplasma mycoides subsp. capri LC str. 95010] gi|51316641|sp|Q6MTP6|RIMP_MYCMS RecName: Full=Ribosome maturation factor rimP gi|42492394|emb|CAE76990.1| conserved hypothetical protein [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301320615|gb|ADK69258.1| conserved hypothetical protein [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] gi|328801910|emb|CBW54063.1| Conserved hypothetical protein [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 164 Score = 53.1 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 66/159 (41%), Gaps = 6/159 (3%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVE---RDDGNMTLRDCEELSQA 75 L I+ ++ +E ++ + QI+ L+E +N ++QI VE + + + + + Sbjct: 6 SLKFQINELVNKELEVLNLKVYQINNLKEFENDMIQILVEDSLQANKPLDFDILIKANDL 65 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +D + Y LE+SS GI++ + + + L+ V ++ ++ G + Sbjct: 66 VSNKIDQLIKTKDKYLLEISSSGIEKQIRSQEELLKALEQWVYVQLNNEIKKVKEFEGYV 125 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ + L + FD + R V Sbjct: 126 TKYNDQTNTFTFSFFIKGQKKNLDVK--FDDIKFIRYAV 162 >gi|242075876|ref|XP_002447874.1| hypothetical protein SORBIDRAFT_06g017270 [Sorghum bicolor] gi|241939057|gb|EES12202.1| hypothetical protein SORBIDRAFT_06g017270 [Sorghum bicolor] Length = 327 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 59/153 (38%), Gaps = 25/153 (16%) Query: 45 LLEEKNLLLQIFVER---DDGNMTLRDCEELSQAISPILDVENI---IEGHYRLEVSSPG 98 NL +++ +E+ G+ T+ D E + A LD I + LEVSSPG Sbjct: 171 FKTAANLTIRVRIEKMSTRYGSPTIDDIEAYTIAYRAKLDDAESTGKIPKNISLEVSSPG 230 Query: 99 IDRPMVRKSDFLRWNGHVVACEIVLSSGDK---QKLIGKIM-------------GTSETG 142 ++R + + R+ + +S + Q+ G + G ++ Sbjct: 231 VERVIRIPEELERFKERAMYVRYTTTSDEAATPQEGDGVLRLISYDMDLRECIWGIADVK 290 Query: 143 FFLEKEKRGE---KDMNELQIAISFDSLLSARL 172 ++ +G K E ++ F+SL RL Sbjct: 291 INRQQSGKGRPLSKKQREWRLQTPFESLKLVRL 323 >gi|326495670|dbj|BAJ85931.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 335 Score = 52.8 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 6/107 (5%) Query: 27 SVIQPVIEEMSFRSVQISLLEEKNLLLQIFVER---DDGNMTLRDCEELSQAISPILDVE 83 ++ + V + NL +++ +E+ G+ T+ D E + A LD Sbjct: 161 ALAEEVSASFDGDLKIYAFKATANLEIRVRIEKMSTRYGSPTIDDIEAYTIAYRAKLDDA 220 Query: 84 NI---IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD 127 I + LEVSSPG++R + D R+ + V++S D Sbjct: 221 ESAGRIPKNVSLEVSSPGVERVIRVPDDLERFKERSMYVRYVITSKD 267 >gi|229496701|ref|ZP_04390415.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC 35406] gi|229316598|gb|EEN82517.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC 35406] Length = 157 Score = 52.4 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 56/134 (41%), Gaps = 14/134 (10%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 + + ++ ++ P E V +S+ +++ + ++ G +T+ C +S+ Sbjct: 4 VTEEIVQKKLNEMLDPAEE----FVVSLSISPANDIV--VVLDSLSG-ITIERCSAISKG 56 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I LD + + + +EV S + P + F + G + D K G + Sbjct: 57 IEAALDRD---KEDFSIEVGSASLSDPFRDERQFAKHQGDPIVV----LFSDGMKRNGIL 109 Query: 136 MGTSETGFFLEKEK 149 + + + GF L+ E+ Sbjct: 110 LSSDQEGFVLQYEE 123 >gi|83319689|ref|YP_424321.1| hypothetical protein MCAP_0337 [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|91208351|sp|Q2SSE2|RIMP_MYCCT RecName: Full=Ribosome maturation factor rimP gi|83283575|gb|ABC01507.1| conserved hypothetical protein [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 164 Score = 52.4 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 56/127 (44%), Gaps = 4/127 (3%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVE---RDDGNMTLRDCEELSQA 75 + I+ ++ +E ++ + +I+ L+E +N ++QI VE + + + + + Sbjct: 6 SIKFQINELVNKELEVLNLKVYEINNLKEFENDMIQILVEDALQANKPLDFDILIKANDL 65 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +D Y LE+SS GI++ + + + ++ V ++ ++ G + Sbjct: 66 VSNKIDQIIKTNQKYLLEISSSGIEKQIRSQEELIKALDQWVYVQLNNEIKKVKEFEGYV 125 Query: 136 MGTSETG 142 + Sbjct: 126 TKYNNDT 132 >gi|302830199|ref|XP_002946666.1| hypothetical protein VOLCADRAFT_116086 [Volvox carteri f. nagariensis] gi|300268412|gb|EFJ52593.1| hypothetical protein VOLCADRAFT_116086 [Volvox carteri f. nagariensis] Length = 438 Score = 52.0 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 10/125 (8%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDD---GNMTLRDCEELS 73 G++ L + +P ++ + + K + I +++ D G+ ++ D E Sbjct: 255 GEVVLRAAQEVLAKPPMKGLELYLFRALPATRK---VDIRLDKLDDLYGSPSIDDIERFQ 311 Query: 74 QAISPILDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 + + L+ E G EVSSPG +R + + R+ + E D +++ Sbjct: 312 RGLLAALEREMGPEAAGEISFEVSSPGAERLVRVPEELPRFAELPLQVEYRTP--DGKEV 369 Query: 132 IGKIM 136 ++ Sbjct: 370 SAVLL 374 >gi|256384402|gb|ACU78972.1| conserved hypothetical protein [Mycoplasma mycoides subsp. capri str. GM12] gi|256385234|gb|ACU79803.1| conserved hypothetical protein [Mycoplasma mycoides subsp. capri str. GM12] gi|296455490|gb|ADH21725.1| conserved hypothetical protein [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 164 Score = 52.0 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 66/159 (41%), Gaps = 6/159 (3%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVE---RDDGNMTLRDCEELSQA 75 L I+ ++ +E ++ + QI+ L+E +N ++QI VE + + + + + Sbjct: 6 SLKFQINELVNKELEVLNLKVYQINNLKEFENDMIQILVEDALQANKPLDFDILIKANDL 65 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +D Y LE+SS GI++ + + + L+ V ++ + ++ G + Sbjct: 66 VSNKIDQIIKTNQKYLLEISSSGIEKQIRNQEELLKALEQWVYVQLNNETKKVKEFEGYV 125 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ + L + FD + R V Sbjct: 126 TKYNDQTNTFTFSFFIKGQKKNLDVK--FDDIKFIRYAV 162 >gi|300780962|ref|ZP_07090816.1| conserved hypothetical protein [Corynebacterium genitalium ATCC 33030] gi|300532669|gb|EFK53730.1| conserved hypothetical protein [Corynebacterium genitalium ATCC 33030] Length = 196 Score = 52.0 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 5/90 (5%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 ++ +I+PV + + ++ + D TL EE+S +S + D Sbjct: 9 VEELKELIRPVTDARGLDIEAVRTVKAGKKSQVVVALAADEAPTLDQLEEVSGELSELFD 68 Query: 82 VENI-----IEGHYRLEVSSPGIDRPMVRK 106 Y LEV++PG+D P+ + Sbjct: 69 AAEAAGTVNFGAGYTLEVTTPGVDLPLTQP 98 >gi|225457765|ref|XP_002264003.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|302142766|emb|CBI19969.3| unnamed protein product [Vitis vinifera] Length = 315 Score = 51.2 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 6/82 (7%) Query: 45 LLEEKNLLLQIFVER---DDGNMTLRDCEELSQAISPILDVENI---IEGHYRLEVSSPG 98 N +Q+ +E+ G+ ++ D E S LD I + + LEVSSPG Sbjct: 159 FKTLANSTIQVRIEKLSNKSGSPSMTDIEAFSSIYRAKLDEAEIAGSVPENLSLEVSSPG 218 Query: 99 IDRPMVRKSDFLRWNGHVVACE 120 ++R + + R+ + + Sbjct: 219 VERVVQIPQELDRFKERPMYVK 240 >gi|297841651|ref|XP_002888707.1| hypothetical protein ARALYDRAFT_315930 [Arabidopsis lyrata subsp. lyrata] gi|297334548|gb|EFH64966.1| hypothetical protein ARALYDRAFT_315930 [Arabidopsis lyrata subsp. lyrata] Length = 1151 Score = 50.8 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 29/204 (14%), Positives = 59/204 (28%), Gaps = 52/204 (25%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVER---DDGNMTLRDCEELSQAISPI 79 + S+ V+++ + + + +++ + G T+ EE S+ Sbjct: 947 EKVLSIAAEVLKQSEEELELFAFKTSPRGYIYVRLDKLSNEYGCPTMDKLEEFSREFKKR 1006 Query: 80 LD---VENIIEGHYRLEV-----------------------------SSPGIDRPMVRKS 107 LD E +I LEV SSPG +R + Sbjct: 1007 LDDAGAEKVIPEDLALEVKRVFLHESTTTQGQFVLNLVSVLFFSVKVSSPGAERLLRVPE 1066 Query: 108 DFLRWNGHVVACEIVLSSGDKQKLIG-----------------KIMGTSETGFFLEKEKR 150 D R+ + V + ++ + K+ E K + Sbjct: 1067 DLPRFKEMPMTVSYVEKTNSRKVVKTAVFLLESIDAESDNCVWKLADVKENRDPESKGRP 1126 Query: 151 GEKDMNELQIAISFDSLLSARLIV 174 + +L+I + F L + Sbjct: 1127 LSRKQKDLRITLPFTDHKKINLYL 1150 >gi|296125434|ref|YP_003632686.1| hypothetical protein Bmur_0384 [Brachyspira murdochii DSM 12563] gi|296017250|gb|ADG70487.1| conserved hypothetical protein [Brachyspira murdochii DSM 12563] Length = 188 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 55/148 (37%), Gaps = 11/148 (7%) Query: 29 IQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 I+ ++E+ + + + N + + + +++ C E ++ I + E Sbjct: 46 IKDILEKDGIYLLDLKVRAISDNKKVYAVIYKKKESVSHTHCIETTRKIQECIKQNGYDE 105 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI---GKIMGTSETGFF 144 G Y + VSS G R + + G + + D ++ I ++ + Sbjct: 106 GDYTITVSSAGF-RWKFNDR-YELFEGMPIKIKYR----DGEQFITSYAELKEAEDDYII 159 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARL 172 + +NE I I + ++ ARL Sbjct: 160 INVLDED-NIINEKNIKILKNDIIKARL 186 >gi|313678839|ref|YP_004056579.1| hypothetical protein MBOVPG45_0800 [Mycoplasma bovis PG45] gi|312950794|gb|ADR25389.1| conserved hypothetical protein [Mycoplasma bovis PG45] Length = 148 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 60/141 (42%), Gaps = 10/141 (7%) Query: 32 VIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYR 91 ++ + + LL+E LL+ +E + L+ EEL++ I+ +D ++ Sbjct: 7 LVNKFGNTIADVKLLKEDGLLI---LEVTASSTDLKAIEELTKLINEYIDSLDVELDFDS 63 Query: 92 LEVSSPGIDRPMVRKSD-FLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKR 150 L VSSPG + ++D G ++ ++ + G+++ + L+ + Sbjct: 64 LSVSSPGF--KLDYETDELGNHIGEIIDVKLNQNVNKLDSYTGELLEDDDESILLKWNCK 121 Query: 151 GEKDMNELQIAISFDSLLSAR 171 G+ ++ I ++ AR Sbjct: 122 GQFR----KVRIEKSNIKKAR 138 >gi|126654114|ref|ZP_01725932.1| hypothetical protein BB14905_22743 [Bacillus sp. B14905] gi|126589394|gb|EAZ83544.1| hypothetical protein BB14905_22743 [Bacillus sp. B14905] Length = 44 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 23/37 (62%), Gaps = 1/37 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERD 60 I + +P+++E++ V I ++E +N L+++V+ Sbjct: 8 IEELAKPIVDELNLELVDIEFVKEGRNWFLRVYVDTP 44 >gi|238809616|dbj|BAH69406.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 210 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 22/140 (15%), Positives = 51/140 (36%), Gaps = 21/140 (15%) Query: 30 QPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGH 89 +IEE + + IS+ L EE+S+ ++ +D Sbjct: 84 AKIIEEDDLKLLDISVNYH----------------DLNKVEEISKQLNEFIDSNYPSLDI 127 Query: 90 YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEK 149 L + SPG++ + G ++ ++ S + K GK++ E + Sbjct: 128 DSLSIHSPGVELTYKTDE-LGKHIGEMLTIKLNKSIEKQDKFNGKLLEVLEGKIQISWNN 186 Query: 150 RGEKDMNELQIAISFDSLLS 169 +G+ ++ I ++++ Sbjct: 187 KGQFR----KVFIDKNNIVK 202 >gi|308189650|ref|YP_003922581.1| hypothetical protein MFE_00760 [Mycoplasma fermentans JER] gi|307624392|gb|ADN68697.1| conserved hypothetical protein [Mycoplasma fermentans JER] Length = 203 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 42/105 (40%), Gaps = 5/105 (4%) Query: 65 TLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS 124 L EE+S+ ++ +D L + SPG++ + G ++ ++ S Sbjct: 96 DLNKVEEISKQLNEFIDSNYPSLDIDSLSIHSPGVELTYKTDE-LGKHIGEMLTIKLNKS 154 Query: 125 SGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLS 169 + K GK++ E + +G+ ++ I ++++ Sbjct: 155 IEKQDKFNGKLLEVLEGKIQISWNNKGQFR----KVFIDKNNIVK 195 >gi|147801247|emb|CAN61512.1| hypothetical protein VITISV_013332 [Vitis vinifera] Length = 231 Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 6/82 (7%) Query: 45 LLEEKNLLLQIFVER---DDGNMTLRDCEELSQAISPILDVENI---IEGHYRLEVSSPG 98 N +Q+ +E+ G+ ++ D E S LD I + + LEVSSPG Sbjct: 75 FKTLANSTIQVRIEKLSNKSGSPSMTDIEAFSSIYRAKLDEAEIAGSVPENLSLEVSSPG 134 Query: 99 IDRPMVRKSDFLRWNGHVVACE 120 ++R + + R+ + + Sbjct: 135 VERVVQIPQELDRFKERPMYVK 156 >gi|6730645|gb|AAF27066.1|AC008262_15 F4N2.17 [Arabidopsis thaliana] Length = 1120 Score = 48.9 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 60/184 (32%), Gaps = 32/184 (17%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVER---DDGNMTLRDCEELSQAISPI 79 + S+ V+++ + + + +++ + G T+ + EE S+ Sbjct: 936 ERVLSIAAQVLKQSEKDLELFAFKTSPRGYIYVRLDKLSTEYGCPTMDELEEFSREFKKR 995 Query: 80 LD---VENIIEGHYRLEVS---SP------GIDRPMVRKSDFLRWNGHVVACEIVLSSGD 127 LD E +I LEV SP G +R + D R+ + V + Sbjct: 996 LDDAGAEKVIPEDLALEVKKSLSPVNQLSLGAERLLRVPEDLPRFKDMPMTVSYVEETNS 1055 Query: 128 KQKLI-G----------------KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 ++ + G K+ E K + + +L+I + F Sbjct: 1056 RKAVKSGVFLLESIDAESDNCVWKLADVRENRDPESKGRPLSRKQKDLRITLPFADHKKI 1115 Query: 171 RLIV 174 L + Sbjct: 1116 NLYL 1119 >gi|300871261|ref|YP_003786134.1| hypothetical protein BP951000_1652 [Brachyspira pilosicoli 95/1000] gi|300688962|gb|ADK31633.1| hypothetical protein BP951000_1652 [Brachyspira pilosicoli 95/1000] Length = 182 Score = 48.1 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 20/149 (13%), Positives = 55/149 (36%), Gaps = 9/149 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + + +IE+ + + + +L K N + + + +++ C E ++ I ++ Sbjct: 40 LFENAKKLIEKHNIYLLDLKVLAVKDNKKVYAVIFKKKESVSHNHCIEATRVIQEVIKNN 99 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 EG Y + VSS G ++ + + + + + + + Sbjct: 100 GYDEGDYTITVSSAGFRW--KFDDNYELFEDMPIKIKYKVDDDNYITTTAILKEAKDDYI 157 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + D + + I I +++ RL Sbjct: 158 II------KNDDDNIDIKILKSNIIKTRL 180 >gi|219363185|ref|NP_001136801.1| hypothetical protein LOC100216947 [Zea mays] gi|194697162|gb|ACF82665.1| unknown [Zea mays] Length = 142 Score = 47.7 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 51/133 (38%), Gaps = 22/133 (16%) Query: 62 GNMTLRDCEELSQAISPILDVENI---IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVA 118 G+ T+ D E + A LD I + LEVSSPG++R + + R+ + Sbjct: 6 GSPTIDDIEAYTIAYRAKLDEAESAGKIPKNISLEVSSPGVERVIRIPEELERFKERAMY 65 Query: 119 CEIVLSSGDK---QKLIGKIM-------------GTSETGFFLEKEKRGE---KDMNELQ 159 +S + Q+ G + G ++ ++ +G K E + Sbjct: 66 VRYTTASDEATTPQEGDGVLTLISYDMDLRECTWGIADVKINRQQSGKGRPLSKKQREWR 125 Query: 160 IAISFDSLLSARL 172 + F+SL RL Sbjct: 126 LQTPFESLKLVRL 138 >gi|313886721|ref|ZP_07820430.1| conserved hypothetical protein [Porphyromonas asaccharolytica PR426713P-I] gi|312923823|gb|EFR34623.1| conserved hypothetical protein [Porphyromonas asaccharolytica PR426713P-I] Length = 165 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 7/96 (7%) Query: 43 ISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRP 102 + + +++ V+ G + + C E+S+AI+ + D + E Y LEVSSP + P Sbjct: 22 VEITSSPGDQIRVVVD-AMGGLPISRCVEISRAITQLHDRDE--EEDYALEVSSPSLSDP 78 Query: 103 MVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 + R V K GK++ Sbjct: 79 WQVYEQYTRHLEAPVQ----AVDASGMKWHGKLIEV 110 >gi|228470369|ref|ZP_04055272.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] gi|228307951|gb|EEK16834.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] Length = 165 Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 7/96 (7%) Query: 43 ISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRP 102 + + +++ V+ G + + C E+S+AI+ + D + E Y LEVSSP + P Sbjct: 22 VEVTSSPGDQIRVVVD-AMGGLPISRCVEISRAITQLHDRDE--EEDYALEVSSPSLSDP 78 Query: 103 MVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 + R V K GK++ Sbjct: 79 WQVYEQYTRHLEAPVQ----AVDASGMKWHGKLIEV 110 >gi|319776807|ref|YP_004136458.1| hypothetical protein MfeM64YM_0071 [Mycoplasma fermentans M64] gi|318037882|gb|ADV34081.1| Conserved Hypothetical Protein [Mycoplasma fermentans M64] Length = 144 Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 42/105 (40%), Gaps = 5/105 (4%) Query: 65 TLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS 124 L EE+S+ ++ +D L + SPG++ + G ++ ++ S Sbjct: 37 DLNKVEEISKQLNEFIDSNYPSLDIDSLSIHSPGVELTYKTDE-LGKHIGEMLTIKLNKS 95 Query: 125 SGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLS 169 + K GK++ E + +G+ ++ I ++++ Sbjct: 96 IEKQDKFNGKLLEVLEGKIQISWNNKGQFR----KVFIDKNNIVK 136 >gi|332300248|ref|YP_004442169.1| Ribosome maturation factor rimP [Porphyromonas asaccharolytica DSM 20707] gi|332177311|gb|AEE13001.1| Ribosome maturation factor rimP [Porphyromonas asaccharolytica DSM 20707] Length = 165 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 7/96 (7%) Query: 43 ISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRP 102 + + +++ V+ G + + C E+S+AI+ + D + E Y LEVSSP + P Sbjct: 22 VEITSSPGDQIRVVVD-VMGGLPISRCVEISRAITQLHDRDE--EEDYALEVSSPSLSDP 78 Query: 103 MVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 + R V K GK++ Sbjct: 79 WQVYEQYTRHLEAPVQ----AVDASGMKWHGKLIEV 110 >gi|255078408|ref|XP_002502784.1| predicted protein [Micromonas sp. RCC299] gi|226518050|gb|ACO64042.1| predicted protein [Micromonas sp. RCC299] Length = 298 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 53/144 (36%), Gaps = 24/144 (16%) Query: 54 QIFVERDD-----GNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSD 108 +I++ D G+ TL +S+ + +L+ + LEV+SPG +R + + Sbjct: 154 RIYISIDAVNDKFGSPTLDQLGAVSRTYNTVLEEKGF-PDDVALEVASPGAERQLRLPLE 212 Query: 109 FLRWNGHVVACEIVLSSGD------KQKLI--------G----KIMGTSETGFFLEKEKR 150 R+ + + + + K++ G K+ E +K + Sbjct: 213 LERFRDLTMKVTYAARAEEDGAEGTRTKVLDVEDIDEDGSPTFKLADVEENRPQAKKGQG 272 Query: 151 GEKDMNELQIAISFDSLLSARLIV 174 K + ++ + + A L V Sbjct: 273 MNKKQRDWRLKLDVGDISKANLYV 296 >gi|147774154|emb|CAN72408.1| hypothetical protein VITISV_038204 [Vitis vinifera] Length = 1721 Score = 45.4 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 38/110 (34%), Gaps = 6/110 (5%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDD---GNMTLRDCEELSQAISPI 79 + S+ + V+ + S + + +++ G ++ + E + Sbjct: 1432 ERVLSIAREVLLQFGGDMELFSFKTTPRGYIYVRLDKLSNKYGCPSMEEIERYNLEYKKK 1491 Query: 80 LDVENI---IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 LD I + +EVSSPG +R + D R+ + V Sbjct: 1492 LDEMGALGEIPHNLAIEVSSPGAERLLKVPDDLDRFKDMPMRVSYVEDVE 1541 >gi|145220366|ref|YP_001131075.1| hypothetical protein Cvib_1563 [Prosthecochloris vibrioformis DSM 265] gi|259586181|sp|A4SGG4|RIMP_PROVI RecName: Full=Ribosome maturation factor rimP gi|145206530|gb|ABP37573.1| protein of unknown function DUF150 [Chlorobium phaeovibrioides DSM 265] Length = 172 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 11/126 (8%) Query: 55 IFVERDDGNMTLRDCEELSQAISPILDV----ENIIEGHYRLEVSSPGIDRPMVRKSDFL 110 + V+ D G + + C LS+ + L+ I+ ++ L V SPG+ P++ + Sbjct: 42 VVVDADSG-VRIDQCAFLSRRLRERLEEDEEMIGILGDNFDLVVGSPGLGEPIILDRQYG 100 Query: 111 RWNGHVVACEIVLSSGDKQKLIGKIMGTS----ETGFFL--EKEKRGEKDMNELQIAISF 164 R G ++ G + +L G ++ S L EK+ K I + Sbjct: 101 RHVGRLLRVSYSDLEGVEHELTGHLLEVSLAEGAGSIMLKPRVEKKKGKGEELENITLEL 160 Query: 165 DSLLSA 170 ++L A Sbjct: 161 GAVLRA 166 >gi|297738103|emb|CBI27304.3| unnamed protein product [Vitis vinifera] Length = 310 Score = 44.3 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 38/110 (34%), Gaps = 6/110 (5%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDD---GNMTLRDCEELSQAISPI 79 + S+ + V+ + S + + +++ G ++ + E + Sbjct: 134 ERVLSIAREVLLQFGGDMELFSFKTTPRGYIYVRLDKLSNKYGCPSMEEIERYNLEYKKK 193 Query: 80 LDVENI---IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 LD I + +EVSSPG +R + D R+ + V Sbjct: 194 LDEMGALGEIPHNLAIEVSSPGAERLLKVPDDLDRFKDMPMRVSYVEDVE 243 >gi|219124159|ref|XP_002182378.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217406339|gb|EEC46279.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 402 Score = 43.9 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 42/120 (35%), Gaps = 18/120 (15%) Query: 63 NMTLR----DCEELSQAISPILDV------ENIIEGHYRLEVSSPGIDRPMVRKSDFLRW 112 + L D LS + ILDV E I + L ++SPG + + F + Sbjct: 269 PIDLDTLQLDKAGLSTIANAILDVLGDAEEELQILSRHELILTSPGPVDVLETQRQFDAY 328 Query: 113 NGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 V E + L GK++ + + K+ R + I + + RL Sbjct: 329 RDKDVMVETQDPFNSNRTLKGKLVDRNAMDLIINKKGR--------MVTIPLNFVKCVRL 380 >gi|293364040|ref|ZP_06610776.1| hypothetical protein MALL_0467 [Mycoplasma alligatoris A21JP2] gi|292552530|gb|EFF41304.1| hypothetical protein MALL_0467 [Mycoplasma alligatoris A21JP2] Length = 140 Score = 43.9 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 5/115 (4%) Query: 44 SLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPM 103 + K+ L+I ++ +D L E+ S+ I L+ N+++ LEV S G D + Sbjct: 19 EIQNNKDKTLEITLDCND----LLTVEKYSRQIYEYLETNNLLDDSTNLEVFSKGSDIEI 74 Query: 104 VRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNEL 158 V + + + GKI+ S L +G+ E+ Sbjct: 75 KLDE-VNNHLNKKVLVGLKNPIQNLNPIPGKILSVSNDHIVLHWNNKGQFRKVEI 128 >gi|242047464|ref|XP_002461478.1| hypothetical protein SORBIDRAFT_02g003280 [Sorghum bicolor] gi|241924855|gb|EER97999.1| hypothetical protein SORBIDRAFT_02g003280 [Sorghum bicolor] Length = 321 Score = 43.5 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 3/69 (4%) Query: 62 GNMTLRDCEELSQAISPILDVE---NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVA 118 G + + E ++ LD I LEVSSPG +R + D R+ + Sbjct: 181 GCPDIEEIENFNRLYKQKLDEIIERGEISLDLALEVSSPGAERLLKVPEDLDRFKDMAMR 240 Query: 119 CEIVLSSGD 127 + + + Sbjct: 241 VQYLAEGDN 249 >gi|226508874|ref|NP_001144098.1| hypothetical protein LOC100276934 [Zea mays] gi|195636892|gb|ACG37914.1| hypothetical protein [Zea mays] Length = 164 Score = 43.5 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 6/82 (7%) Query: 45 LLEEKNLLLQIFVERDD---GNMTLRDCEELSQAISPILDVE---NIIEGHYRLEVSSPG 98 + + +++ G + + E+ ++ LD I LEVSSPG Sbjct: 4 FKVSPKGYVYVRLDKLTDVYGCPDIEEIEKFNRLYKQKLDEIVERGEISLDLALEVSSPG 63 Query: 99 IDRPMVRKSDFLRWNGHVVACE 120 +R + D R+ + + Sbjct: 64 AERLLKVPEDLDRFKDMAMRVQ 85 >gi|256371438|ref|YP_003109262.1| hypothetical protein Afer_0635 [Acidimicrobium ferrooxidans DSM 10331] gi|256008022|gb|ACU53589.1| hypothetical protein Afer_0635 [Acidimicrobium ferrooxidans DSM 10331] Length = 159 Score = 42.7 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 14/72 (19%) Query: 55 IFVERDDGNM-TLRDCEELSQAI-----SPILDVENIIEGHYRLEVSSPGIDRPMVRKSD 108 +FVE DD + +L + E++S+ + S + DV +EVSSPG++R + R Sbjct: 34 VFVEHDDASAPSLDELEQVSRDVVTVVRSELGDVA--------VEVSSPGLERRLRRIEQ 85 Query: 109 FLRWNGHVVACE 120 G VA Sbjct: 86 ARAVLGRSVAIR 97 >gi|219127219|ref|XP_002183837.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217404560|gb|EEC44506.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 248 Score = 42.7 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 51/116 (43%), Gaps = 11/116 (9%) Query: 60 DDGNMTLRDCEELSQAISPILDVENI---IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHV 116 G + D +L++AI+ D + + I + +EV++PG + F + G Sbjct: 134 PPGAV---DVTQLTRAINAAFDADEVGLAIAEAHEVEVTTPGASDELSGIM-FQSYRGFD 189 Query: 117 VACEIVLSSGDKQK-LIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 V + + + KQK + G++ ++ + + R + N+ I++ L A+ Sbjct: 190 VIVQHMDKNTKKQKIIEGRLHERNDEFTVINIKGRMKNLKNQDIISV---KLPKAK 242 >gi|225423440|ref|XP_002273771.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 223 Score = 42.7 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 38/110 (34%), Gaps = 6/110 (5%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDD---GNMTLRDCEELSQAISPI 79 + S+ + V+ + S + + +++ G ++ + E + Sbjct: 47 ERVLSIAREVLLQFGGDMELFSFKTTPRGYIYVRLDKLSNKYGCPSMEEIERYNLEYKKK 106 Query: 80 LDVENI---IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 LD I + +EVSSPG +R + D R+ + V Sbjct: 107 LDEMGALGEIPHNLAIEVSSPGAERLLKVPDDLDRFKDMPMRVSYVEDVE 156 >gi|326515564|dbj|BAK07028.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 294 Score = 42.0 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 6/89 (6%) Query: 45 LLEEKNLLLQIFVERDD---GNMTLRDCEELSQAISPILDVE---NIIEGHYRLEVSSPG 98 + + +++ G + + E ++ LD I LE+SSPG Sbjct: 142 FKVSPKGYVYVRLDKLTSRYGCPGIEEIENFNRLYKQKLDEIIERGEIPLDLALEISSPG 201 Query: 99 IDRPMVRKSDFLRWNGHVVACEIVLSSGD 127 +R + D R+ + + + Sbjct: 202 AERLLKVPGDLDRFKDMAMRVQYLAEGDG 230 >gi|255026352|ref|ZP_05298338.1| hypothetical protein LmonocytFSL_08425 [Listeria monocytogenes FSL J2-003] Length = 41 Score = 42.0 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 21/38 (55%), Gaps = 1/38 (2%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFV 57 + + +++ P+ +E+ V I+ +E N L+IF+ Sbjct: 4 VLEQVEAIVAPITDELQLELVDIAFEKEGPNWFLRIFI 41 >gi|218190735|gb|EEC73162.1| hypothetical protein OsI_07201 [Oryza sativa Indica Group] Length = 829 Score = 41.6 bits (97), Expect = 0.053, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 18/37 (48%) Query: 93 EVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ 129 EVSSPG++R + D R+ + ++S + Sbjct: 725 EVSSPGVERVIRIPDDLERFKERAMYVRYTITSDGGE 761 >gi|153812999|ref|ZP_01965667.1| hypothetical protein RUMOBE_03406 [Ruminococcus obeum ATCC 29174] gi|149830946|gb|EDM86036.1| hypothetical protein RUMOBE_03406 [Ruminococcus obeum ATCC 29174] Length = 56 Score = 41.6 bits (97), Expect = 0.061, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 25/56 (44%), Gaps = 4/56 (7%) Query: 113 NGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKR----GEKDMNELQIAISF 164 G +V +++ G + E+ ++++ + +KD+ +++AI F Sbjct: 1 MGKLVEIRTYRPIEKQKEFCGILNAYDESSVTIDEDGQLRTFDKKDIALIRLAIEF 56 >gi|145352954|ref|XP_001420798.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144581033|gb|ABO99091.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 189 Score = 41.2 bits (96), Expect = 0.071, Method: Composition-based stats. Identities = 27/178 (15%), Positives = 63/178 (35%), Gaps = 22/178 (12%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDD---GNMTLRDCEEL 72 +G+M L + + + + + +L V++ + G+ TL + + Sbjct: 13 YGEMALEA-LRDALASDAFAGEYDIFSFKVNASRRRVL-ASVDKLNDKYGSPTLDELTTI 70 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 +A + ILD E E++SPG R + + R+ V+ + + + Sbjct: 71 VRAHNAILDERGFPEDVAV-ELASPGAMRSLRVPRELERFRDLVMDVTYKEAIENPESTS 129 Query: 133 G-----KIMGTSETGFFLEKEKRGE-----------KDMNELQIAISFDSLLSARLIV 174 ++ S+T + K E ++ + D+++ A L + Sbjct: 130 NVTKTMEVTDISDTEVEWKLADVPANRPAKKGQGMNKKSREWRLRMPLDAVVRANLFI 187 >gi|115470641|ref|NP_001058919.1| Os07g0155200 [Oryza sativa Japonica Group] gi|50509569|dbj|BAD31346.1| unknown protein [Oryza sativa Japonica Group] gi|113610455|dbj|BAF20833.1| Os07g0155200 [Oryza sativa Japonica Group] gi|215686454|dbj|BAG87671.1| unnamed protein product [Oryza sativa Japonica Group] gi|215737697|dbj|BAG96827.1| unnamed protein product [Oryza sativa Japonica Group] gi|218199109|gb|EEC81536.1| hypothetical protein OsI_24944 [Oryza sativa Indica Group] gi|222636456|gb|EEE66588.1| hypothetical protein OsJ_23139 [Oryza sativa Japonica Group] Length = 301 Score = 40.8 bits (95), Expect = 0.089, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 6/89 (6%) Query: 45 LLEEKNLLLQIFVERDD---GNMTLRDCEELSQAISPILDV---ENIIEGHYRLEVSSPG 98 + + +++ G + + E ++ LD + I +EVSSPG Sbjct: 144 FKVSPKGYVYVRLDKLTNRYGCPGIEEIESFNKLYKQKLDELIEQGEIPLDLAIEVSSPG 203 Query: 99 IDRPMVRKSDFLRWNGHVVACEIVLSSGD 127 +R + D R+ + + ++ D Sbjct: 204 AERLLKVPKDLDRFKDMAMRVQYLVEGDD 232 >gi|47458984|ref|YP_015846.1| hypothetical protein MMOB1490 [Mycoplasma mobile 163K] gi|51316612|sp|Q6KIE1|RIMP_MYCMO RecName: Full=Ribosome maturation factor rimP gi|47458312|gb|AAT27635.1| conserved hypothetical protein [Mycoplasma mobile 163K] Length = 168 Score = 40.8 bits (95), Expect = 0.100, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 50/115 (43%), Gaps = 10/115 (8%) Query: 40 SVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDV-ENIIEGHYRLEVSSP 97 +I+ +EK+ LQI + ++ L E S+ IS ILD E + Y L++SS Sbjct: 43 IYEITWTKEKDDSFLQITL-NEN---NLEKITEYSKEISNILDNYEKELPSKYFLDISSR 98 Query: 98 GIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGE 152 GI+ + + + + + + + +K+ G + L+ +G+ Sbjct: 99 GINLSIQK-ENLDNYLEKYIEISL---VNETKKIKGILWEIKNETIILKVNFKGQ 149 >gi|291320688|ref|YP_003515953.1| hypothetical protein MAGa7990 [Mycoplasma agalactiae] gi|290753024|emb|CBH41000.1| Conserved hypothetical protein [Mycoplasma agalactiae] Length = 148 Score = 40.4 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 59/144 (40%), Gaps = 20/144 (13%) Query: 32 VIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHY 90 ++E+ + + ++ E L +L++ D L+D EEL++ ++ +D N+ Sbjct: 7 LVEKFGNKINDVKIVNEDGLLILEVIASSRD----LKDIEELTKIVNDYIDSLNVEFDFD 62 Query: 91 RLEVSSPGIDRPMVRKSDFL-----RWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFL 145 L +SSPG K D+ G +V ++ + G+I+ + L Sbjct: 63 SLSISSPGF------KMDYETDELGNHIGEIVDVKLNKNVNKLDFYTGEILENNPESILL 116 Query: 146 EKEKRGEKDMNELQIAISFDSLLS 169 + +G+ ++ I ++ Sbjct: 117 KWNCKGQFR----KVEIEKANIKK 136 >gi|148377962|ref|YP_001256838.1| hypothetical protein MAG_7000 [Mycoplasma agalactiae PG2] gi|148292008|emb|CAL59400.1| Conserved hypothetical protein [Mycoplasma agalactiae PG2] Length = 136 Score = 40.0 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 56/139 (40%), Gaps = 10/139 (7%) Query: 32 VIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHY 90 ++E+ + + ++ E L +L++ D L+D EEL++ ++ +D N+ Sbjct: 7 LLEKFGNKINDVKIVNEDGLLILEVIASSRD----LKDIEELTKIVNDYIDSLNVEFDFD 62 Query: 91 RLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKR 150 L +SSPG G +V ++ + G+I+ + L+ + Sbjct: 63 SLSISSPGFTMDYETDE-LGNHIGEIVDVKLNKNVNKLDFYTGEILENNPETILLKWNCK 121 Query: 151 GEKDMNELQIAISFDSLLS 169 G+ ++ I ++ Sbjct: 122 GQFR----KVEIEKANIKK 136 >gi|218188575|gb|EEC71002.1| hypothetical protein OsI_02674 [Oryza sativa Indica Group] Length = 106 Score = 39.7 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 18/39 (46%) Query: 89 HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD 127 Y L VSSPG +R + D R+ + + ++ D Sbjct: 10 EYNLLVSSPGAERLLEVPEDLDRFKDMAIRVQYLVEGDD 48 >gi|224112098|ref|XP_002316081.1| predicted protein [Populus trichocarpa] gi|222865121|gb|EEF02252.1| predicted protein [Populus trichocarpa] Length = 229 Score = 39.3 bits (91), Expect = 0.28, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 35/99 (35%), Gaps = 6/99 (6%) Query: 27 SVIQPVIEEMSFRSVQISLLEEKNLLLQIFVER---DDGNMTLRDCEELSQAISPILDVE 83 S+ + V+ + + + +++ G ++ + E Q L+ Sbjct: 60 SIAREVLLSFGDDIELFAFKTTPRGYVYVRLDKLSQPYGCPSIEELESYCQEYRKRLEEV 119 Query: 84 NI---IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVAC 119 I + +EVS+PG +R + D R+ + Sbjct: 120 GALGEIPNNLAVEVSTPGAERILKVPEDLSRFKDMPMRV 158 >gi|304373278|ref|YP_003856487.1| hypothetical protein MHR_0492 [Mycoplasma hyorhinis HUB-1] gi|304309469|gb|ADM21949.1| hypothetical protein MHR_0492 [Mycoplasma hyorhinis HUB-1] Length = 195 Score = 38.9 bits (90), Expect = 0.37, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 13/101 (12%) Query: 65 TLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR---WNGHVVACEI 121 L+ EEL++ IS +D + + L+V S G D + DF + + + Sbjct: 89 DLKQIEELTRKISNFIDNFSSDNNQFYLDVLSQGTDTKL----DFAKLENHINEHIQVWL 144 Query: 122 VLSSGDKQKLI-GKIMGTSETGFFLEKEKRGEKDMNELQIA 161 +K + + G ++ E LE +G K + Sbjct: 145 -----NKDEFVLGYLLDKQENIITLEINVKGRKKKQNFNLE 180 >gi|294155313|ref|YP_003559697.1| hypothetical protein MCRO_0013 [Mycoplasma crocodyli MP145] gi|291600511|gb|ADE20007.1| conserved hypothetical protein [Mycoplasma crocodyli MP145] Length = 141 Score = 38.5 bits (89), Expect = 0.45, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 58/129 (44%), Gaps = 9/129 (6%) Query: 44 SLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPM 103 L +++ L+I ++ D L+ E+ ++ I L+ E+++ L++ S G D + Sbjct: 20 ELKNDQDFTLEIVLDTRD----LKTVEKYTREIYDFLENESLLGEDTSLDILSKGSD-II 74 Query: 104 VRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAIS 163 V + ++ G + + + ++ GK++ ++ ++G ++ ++ Sbjct: 75 VSIDEIEKFIGKKLVFSLKKEVMNTLEIPGKLLSVDGNNITIQFNQKGLLR----KVELN 130 Query: 164 FDSLLSARL 172 +++ ++ Sbjct: 131 KENIKEVKI 139 >gi|213022853|ref|ZP_03337300.1| hypothetical protein Salmonelentericaenterica_09628 [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 41 Score = 37.7 bits (87), Expect = 0.77, Method: Composition-based stats. Identities = 7/46 (15%), Positives = 15/46 (32%), Gaps = 8/46 (17%) Query: 128 KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 ++K G I + E + E + ++ A L+ Sbjct: 1 RRKWQGIIKAVDGEMITVTVEGKDEV--------FALSNIQKANLV 38 >gi|121611482|ref|YP_999289.1| polypeptide-transport-associated domain-containing protein [Verminephrobacter eiseniae EF01-2] gi|121556122|gb|ABM60271.1| Polypeptide-transport-associated domain protein, FtsQ-type [Verminephrobacter eiseniae EF01-2] Length = 294 Score = 37.7 bits (87), Expect = 0.85, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 5/51 (9%) Query: 13 PRIFGDMGLAGDI---SSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 PR+ G G + + ++QPV E + R + L + ++ + Sbjct: 149 PRLQGPSGSSAQVLQMHGLLQPVFESLGLRLQGLELTGRGGW--RATLDNE 197 >gi|303240919|ref|ZP_07327430.1| PKD domain containing protein [Acetivibrio cellulolyticus CD2] gi|302591505|gb|EFL61242.1| PKD domain containing protein [Acetivibrio cellulolyticus CD2] Length = 4122 Score = 37.0 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 5/44 (11%) Query: 41 VQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + L E + ++ + DG CE SQ IS ILD E+ Sbjct: 1665 WDVEYLPEGDYTIRYTLTDRDGYT----CEAFSQIIS-ILDAED 1703 >gi|301091565|ref|XP_002895965.1| conserved hypothetical protein [Phytophthora infestans T30-4] gi|262096029|gb|EEY54081.1| conserved hypothetical protein [Phytophthora infestans T30-4] Length = 1277 Score = 37.0 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 8/27 (29%), Positives = 15/27 (55%) Query: 34 EEMSFRSVQISLLEEKNLLLQIFVERD 60 E + F + + +E K LL++ V+ D Sbjct: 647 ENLGFVLIDLEYVEHKEDLLRVRVDND 673 >gi|159474558|ref|XP_001695392.1| predicted protein [Chlamydomonas reinhardtii] gi|158275875|gb|EDP01650.1| predicted protein [Chlamydomonas reinhardtii] Length = 253 Score = 36.6 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 2/53 (3%) Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 +A+ L VE G EVSSPG +R + + R+ + E G Sbjct: 141 RALDRELGVEA--AGEISFEVSSPGAERLVRVPDELRRFETLPLKVEYRTPEG 191 >gi|330723849|gb|AEC46219.1| hypothetical protein SRH_03395 [Mycoplasma hyorhinis MCLD] Length = 142 Score = 36.6 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 7/98 (7%) Query: 65 TLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS 124 L+ EEL++ IS +D + + L+V S G D + + + Sbjct: 36 DLKQIEELTRKISNFIDNFSSDNNQFYLDVLSQGTDTKLDFAK-LENHINEHIQVWL--- 91 Query: 125 SGDKQKLI-GKIMGTSETGFFLEKEKRGEKDMNELQIA 161 +K + + G ++ E LE +G K + Sbjct: 92 --NKDEFVLGYLLDKQENIITLEINVKGRKKKQNFNLE 127 >gi|268611648|ref|ZP_06145375.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Ruminococcus flavefaciens FD-1] Length = 456 Score = 36.6 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 13/70 (18%) Query: 93 EVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGE 152 E+SS + R+ G + L+ G +K G + G S +E E Sbjct: 386 EISS----------EHYKRFIGRTMRV---LADGKAKKREGWLTGKSSEFIIVEFEGDSS 432 Query: 153 KDMNELQIAI 162 + + I Sbjct: 433 LIGQFVDVEI 442 >gi|126291875|ref|XP_001381794.1| PREDICTED: similar to Chromosome 20 open reading frame 114 [Monodelphis domestica] Length = 491 Score = 36.2 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 22/47 (46%) Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 +I+G ++ + + L+I I FD + L +TD+L+ Sbjct: 87 QIIGLQVNTVNIKNLDLKFTESDRLRIKIPFDMVAGLNLAITDKLIE 133 >gi|20521302|dbj|BAB91816.1| hypothetical protein [Oryza sativa Japonica Group] gi|20804622|dbj|BAB92312.1| hypothetical protein [Oryza sativa Japonica Group] Length = 165 Score = 36.2 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 16/34 (47%) Query: 94 VSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD 127 VSSPG +R + D R+ + + ++ D Sbjct: 74 VSSPGAERLLEVPEDLDRFKDMAIRVQYLVEGDD 107 >gi|119509513|ref|ZP_01628661.1| Transposase, IS605 OrfB [Nodularia spumigena CCY9414] gi|119510380|ref|ZP_01629515.1| Transposase, IS605 OrfB [Nodularia spumigena CCY9414] gi|119465017|gb|EAW45919.1| Transposase, IS605 OrfB [Nodularia spumigena CCY9414] gi|119465919|gb|EAW46808.1| Transposase, IS605 OrfB [Nodularia spumigena CCY9414] Length = 422 Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 9/70 (12%), Positives = 18/70 (25%) Query: 99 IDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNEL 158 + R + + F HV + + IG + G + G K Sbjct: 55 LHRLLKSNAHFQALYSHVAQQTLTTVFESFRSFIGLLKGVKGGTVEQRPKLPGYKKNALK 114 Query: 159 QIAISFDSLL 168 + + Sbjct: 115 LVTFPRADVK 124 >gi|317056657|ref|YP_004105124.1| RNA modification enzyme, MiaB family [Ruminococcus albus 7] gi|315448926|gb|ADU22490.1| RNA modification enzyme, MiaB family [Ruminococcus albus 7] Length = 465 Score = 35.8 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 4/62 (6%) Query: 101 RPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQI 160 R + + F R+ G V L+ G+ + G + G ++ +E + +++ Sbjct: 393 REITCEW-FGRFVGQTVEV---LAEGEGRTAEGWLTGKNDENIIVEFPADKKYIGEFVKV 448 Query: 161 AI 162 I Sbjct: 449 RI 450 >gi|205373422|ref|ZP_03226226.1| hypothetical protein Bcoam_09035 [Bacillus coahuilensis m4-4] Length = 58 Score = 35.8 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 4/30 (13%), Positives = 15/30 (50%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN 50 + + + P+++E+ V + ++E + Sbjct: 4 ITDLVEQLAPPILDELKLELVDVEYVKEGS 33 >gi|332027366|gb|EGI67449.1| Bardet-Biedl syndrome 4 protein-like protein [Acromyrmex echinatior] Length = 398 Score = 35.8 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 10/82 (12%), Positives = 28/82 (34%), Gaps = 22/82 (26%) Query: 108 DFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSL 167 D+ ++G ++ K+ ++ +I + ++ Sbjct: 136 DWEIYHGREAYVKLNQLQEGKKYF--------------------KRSTELTKIELP--NI 173 Query: 168 LSARLIVTDELLRASLNNYGSY 189 ARL + D+++ + N Y + Sbjct: 174 DLARLYLLDDMIPEARNAYTAA 195 >gi|297579039|ref|ZP_06940967.1| autotransporter adhesin [Vibrio cholerae RC385] gi|297536633|gb|EFH75466.1| autotransporter adhesin [Vibrio cholerae RC385] Length = 4405 Score = 35.4 bits (81), Expect = 3.5, Method: Composition-based stats. Identities = 7/49 (14%), Positives = 20/49 (40%), Gaps = 4/49 (8%) Query: 128 KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLS-ARLIVT 175 + + GK++ ++ L+ K ++ + + + A L+ T Sbjct: 3190 GKNITGKLVDFNDDVITLDV---TSKKGRKVLVEVPVSDISQAANLVQT 3235 >gi|114661966|ref|XP_001149221.1| PREDICTED: glycerophosphodiester phosphodiesterase domain-containing protein 3 [Pan troglodytes] Length = 318 Score = 35.0 bits (80), Expect = 4.6, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 8/74 (10%) Query: 80 LDVENIIEGHYRLEVSSP------GIDRPMVRKSD-FLRWNGHVVACEIVLSSGD-KQKL 131 LD E++ +LEV SP G DR MVR D F R+ ++ EI + + +++ Sbjct: 103 LDFEDLPLYKEKLEVYSPPGHFAHGSDRRMVRLEDLFQRFPRTPMSVEIKGKNEELIREI 162 Query: 132 IGKIMGTSETGFFL 145 G + + Sbjct: 163 AGLVRRYDRNEITI 176 >gi|81428864|ref|YP_395864.1| hypothetical protein LSA1253 [Lactobacillus sakei subsp. sakei 23K] gi|78610506|emb|CAI55557.1| Hypothetical protein LCA_1253 [Lactobacillus sakei subsp. sakei 23K] Length = 53 Score = 35.0 bits (80), Expect = 4.7, Method: Composition-based stats. Identities = 4/28 (14%), Positives = 15/28 (53%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE 48 + + ++ P++++ F V + ++E Sbjct: 4 VVETVHDLLVPILDQHHFELVDVEFVKE 31 >gi|325680283|ref|ZP_08159843.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ruminococcus albus 8] gi|324107992|gb|EGC02248.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ruminococcus albus 8] Length = 465 Score = 35.0 bits (80), Expect = 5.6, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 4/62 (6%) Query: 101 RPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQI 160 R + + F R+ G V L G+ + G + G ++ +E + + +++ Sbjct: 393 REITSEW-FGRFVGRTVEV---LVEGEGRTGEGWLTGKNDENIIVEVKADKKYIGEFVRV 448 Query: 161 AI 162 I Sbjct: 449 RI 450 >gi|222082040|ref|YP_002541405.1| dipeptide ABC transporter [Agrobacterium radiobacter K84] gi|221726719|gb|ACM29808.1| dipeptide ABC transporter [Agrobacterium radiobacter K84] Length = 546 Score = 35.0 bits (80), Expect = 5.9, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 3/80 (3%) Query: 93 EVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKR-- 150 E++SPG R ++ K D G L++ K +IG +M + L + Sbjct: 259 EIASPGTRRALLEKGDVDVSVGLPPKDYAELAAAGKVNVIGTLMQNEQFNVDLNVTMKPF 318 Query: 151 -GEKDMNELQIAISFDSLLS 169 ++ + A+ +DS++ Sbjct: 319 DDKRVRQAIAYALPYDSIMK 338 >gi|156063154|ref|XP_001597499.1| hypothetical protein SS1G_01693 [Sclerotinia sclerotiorum 1980] gi|154697029|gb|EDN96767.1| hypothetical protein SS1G_01693 [Sclerotinia sclerotiorum 1980 UF-70] Length = 719 Score = 34.7 bits (79), Expect = 6.1, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 4/80 (5%) Query: 19 MGLAGDISSVIQPVI---EEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 M + + P+I + + L E+++ L ++D D E+S Sbjct: 1 MSGETQLEMSVDPIIPDEASIDDELSDVELEEDRSSSLSEIEDKDAEQ-EHEDDAEVSDE 59 Query: 76 ISPILDVENIIEGHYRLEVS 95 +S + ++ RLEVS Sbjct: 60 LSNPSEDDDSEAETERLEVS 79 >gi|39940794|ref|XP_359934.1| hypothetical protein MGG_04843 [Magnaporthe oryzae 70-15] gi|145010933|gb|EDJ95589.1| hypothetical protein MGG_04843 [Magnaporthe oryzae 70-15] Length = 725 Score = 34.7 bits (79), Expect = 6.1, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 15/96 (15%) Query: 94 VSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK-QKLIGKIMGTSETGFFLEKEKRGE 152 V SPGI+ P+ D V S +K ++ G I G S++ L + Sbjct: 399 VESPGIE-PIFLYHD------EKVKKIPGAPSEEKIKEFRGLIDGLSKSLLELTDKYCDP 451 Query: 153 KDMNELQIAISFDSLLSARLIVTDELLRASLNNYGS 188 Q I F ++ R +R SL + Sbjct: 452 AAGPLHQYTIEFQDIIMQR-------IRESLEPGDA 480 >gi|158291291|ref|XP_312817.3| AGAP003131-PA [Anopheles gambiae str. PEST] gi|157017704|gb|EAA08427.3| AGAP003131-PA [Anopheles gambiae str. PEST] Length = 506 Score = 34.7 bits (79), Expect = 7.6, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 7/69 (10%) Query: 111 RWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 +W G V+ G G I + + + K R + + + ++ ++ A Sbjct: 4 KWVGKSVSIHCRNDIG---IFQGIIKRVTPSVVVITKAVRNGIPLKKNNVEVTLSAVDIA 60 Query: 171 RLIVTDELL 179 +L +L+ Sbjct: 61 KL----DLI 65 >gi|327271822|ref|XP_003220686.1| PREDICTED: solute carrier family 13 member 3-like [Anolis carolinensis] Length = 655 Score = 34.3 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 7/62 (11%) Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR--WNGHVVACEIVLSSGDKQKLI 132 + +D +++IE +EVSS + ++ ++ W G +++ S G L Sbjct: 196 QLLANVDEKDLIEEKVTIEVSS-----DVRKEEEYKTNVWKGFLISIPYSASIGGTATLT 250 Query: 133 GK 134 G Sbjct: 251 GT 252 >gi|326383590|ref|ZP_08205276.1| ATP-dependent DNA ligase [Gordonia neofelifaecis NRRL B-59395] gi|326197674|gb|EGD54862.1| ATP-dependent DNA ligase [Gordonia neofelifaecis NRRL B-59395] Length = 649 Score = 34.3 bits (78), Expect = 8.5, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLLL-QIFVERDDGN-MTLRDCEELSQAISPI 79 A D+ + Q E+ +I L E + L +I ++ D G +TL DC +++ I + Sbjct: 100 AADLVWLAQVAALELHVPQWRIDLSNEHDRLTDRIVLDLDPGPEVTLDDCAKVALDIRDM 159 Query: 80 LD 81 LD Sbjct: 160 LD 161 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.313 0.175 0.537 Lambda K H 0.267 0.0535 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,303,126,888 Number of Sequences: 14124377 Number of extensions: 231689303 Number of successful extensions: 488212 Number of sequences better than 10.0: 1944 Number of HSP's better than 10.0 without gapping: 3222 Number of HSP's successfully gapped in prelim test: 412 Number of HSP's that attempted gapping in prelim test: 480351 Number of HSP's gapped (non-prelim): 3696 length of query: 192 length of database: 4,842,793,630 effective HSP length: 131 effective length of query: 61 effective length of database: 2,992,500,243 effective search space: 182542514823 effective search space used: 182542514823 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 78 (34.3 bits)