BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780789|ref|YP_003065202.1| hypothetical protein CLIBASIA_03400 [Candidatus Liberibacter asiaticus str. psy62] (192 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|209883665|ref|YP_002287522.1| hypothetical protein OCAR_4512 [Oligotropha carboxidovorans OM5] gi|226706198|sp|B6JCS7|RIMP_OLICO RecName: Full=Ribosome maturation factor rimP gi|209871861|gb|ACI91657.1| hypothetical protein OCAR_4512 [Oligotropha carboxidovorans OM5] Length = 260 Score = 187 bits (474), Expect = 9e-46, Method: Composition-based stats. Identities = 61/187 (32%), Positives = 106/187 (56%), Gaps = 1/187 (0%) Query: 5 HFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNM 64 S EPR+ + G+A ++++ +PV+E + +R V+I + E +QI ER DG M Sbjct: 9 ETATSTAEPRLVVEPGVAARVAAIAEPVLEGLGYRLVRIKISGEAGCTVQIMAERPDGTM 68 Query: 65 TLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS 124 + DCE +S+A+SP++DV + I+ YRLE+SSPGIDRP+VR+SDF R+ GH+V E+ Sbjct: 69 LIDDCEAVSKALSPVMDVADPIQRAYRLEISSPGIDRPLVRQSDFERYTGHLVKIEMAAP 128 Query: 125 SGDKQKLIGKIMGTSETGFFLEKEK-RGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 +++ G + G + + ++ + + + + SA L++TD+L+ S+ Sbjct: 129 HEGRKRFRGTLQGIEDNLVRITRDDAKSHEGAQPADARLPLADIASAHLVLTDQLIAESM 188 Query: 184 NNYGSYA 190 Sbjct: 189 RRGRDAE 195 >gi|170750128|ref|YP_001756388.1| hypothetical protein Mrad2831_3730 [Methylobacterium radiotolerans JCM 2831] gi|259585788|sp|B1LX00|RIMP_METRJ RecName: Full=Ribosome maturation factor rimP gi|170656650|gb|ACB25705.1| protein of unknown function DUF150 [Methylobacterium radiotolerans JCM 2831] Length = 257 Score = 185 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 66/187 (35%), Positives = 100/187 (53%) Query: 3 STHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDG 62 S+ E R+ + G+A ++ I+ + + FR V++ + +QI ER DG Sbjct: 2 SSEIEADLSEKRLVREAGVAARVAQAIEGPLAGLGFRLVRVRMSNVNGCTVQIMAERPDG 61 Query: 63 NMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV 122 T+ DCE +S+AISPILDV++ + G Y LEVSSPGIDRP+VR SDF RW G+ E+ Sbjct: 62 TFTIDDCEAVSRAISPILDVDDPVGGAYNLEVSSPGIDRPLVRVSDFARWAGYEAKVELS 121 Query: 123 LSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS 182 +++ G + TG + + K+ +I + L A L++TDEL+R S Sbjct: 122 PPLDGRKRFRGILGAPDPTGTTVPIDLPDVKEGLPSRIDLPLKDLAEAHLVLTDELIRES 181 Query: 183 LNNYGSY 189 L G Sbjct: 182 LRRGGPP 188 >gi|220924483|ref|YP_002499785.1| hypothetical protein Mnod_4615 [Methylobacterium nodulans ORS 2060] gi|219949090|gb|ACL59482.1| protein of unknown function DUF150 [Methylobacterium nodulans ORS 2060] Length = 238 Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats. Identities = 59/181 (32%), Positives = 96/181 (53%), Gaps = 2/181 (1%) Query: 9 SKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRD 68 E R+ + G+A ++ +++P +E + FR V++ + + +QI ER DG MT+ D Sbjct: 46 DAAEKRLITETGVAARVAQIVEPSLEGLGFRLVRVRVTGQNGCTVQIMAERPDGTMTVED 105 Query: 69 CEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 CE +S+ ISP+LDV++ I Y LE+SSPGIDRP+VR DF RW GH E+ + + Sbjct: 106 CESVSRTISPLLDVDDPIGRAYHLEISSPGIDRPLVRVGDFARWAGHEAKVELTVPLEGR 165 Query: 129 QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGS 188 ++ G I + + K+ + + A L++TD L+R SL + Sbjct: 166 KRFRGIIRAPEGESVRI--DLPDAKEGTPASYDLRLRDIGEAHLVLTDALIRESLRRGSA 223 Query: 189 Y 189 Sbjct: 224 P 224 >gi|91974716|ref|YP_567375.1| hypothetical protein RPD_0234 [Rhodopseudomonas palustris BisB5] gi|123749481|sp|Q13EL5|RIMP_RHOPS RecName: Full=Ribosome maturation factor rimP gi|91681172|gb|ABE37474.1| protein of unknown function DUF150 [Rhodopseudomonas palustris BisB5] Length = 262 Score = 184 bits (467), Expect = 6e-45, Method: Composition-based stats. Identities = 65/183 (35%), Positives = 107/183 (58%), Gaps = 2/183 (1%) Query: 8 HSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLR 67 + EPR+ + G+A ++V +PV++ M +R V+I + E +QI ER DG M + Sbjct: 12 DTLAEPRLVVEPGVAARFAAVAEPVLQAMGYRLVRIKVSGEAGCTVQIMAERPDGTMLID 71 Query: 68 DCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD 127 DCE +S+A+SP+LDV + I+ YRLE+SSPGIDRP+VR SDF R++GH+V E+ + Sbjct: 72 DCEAVSRALSPVLDVTDPIDRAYRLEISSPGIDRPLVRSSDFARYSGHLVKIEMAVPHQG 131 Query: 128 KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYG 187 +++ G + G +++E G + + + + ARL++TDEL+ S+ Sbjct: 132 RKRYRGLLDGVEGDAIRIQRE--GVTKDEDPLVLLPMHDIGDARLVLTDELVAESMRRGK 189 Query: 188 SYA 190 Sbjct: 190 QAE 192 >gi|158421641|ref|YP_001522933.1| hypothetical protein AZC_0017 [Azorhizobium caulinodans ORS 571] gi|158328530|dbj|BAF86015.1| uncharacterized protein [Azorhizobium caulinodans ORS 571] Length = 329 Score = 183 bits (465), Expect = 8e-45, Method: Composition-based stats. Identities = 66/190 (34%), Positives = 109/190 (57%), Gaps = 2/190 (1%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 M T EPR+ + G+A I++++ PV+ +++ R V++ + QI ER Sbjct: 39 MNETVEALDPNEPRLITESGVAARIAAIVTPVLADLNLRLVRVKVTARDGGTCQIMAERP 98 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 DG+MT+ DCE S+AISP+LDVE+ I G YRLE+SSPGIDRP+VR +DF RW GH V E Sbjct: 99 DGSMTIDDCEAASRAISPVLDVEDPITGAYRLEISSPGIDRPLVRLTDFDRWAGHEVKVE 158 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 + + +++ G ++GT +++ E ++++ + A+L++TD L+ Sbjct: 159 MAVPVDGRKRFRGILIGTRAELAVVKRTD--APKGEEPEVSLPVADIGEAKLVLTDALIT 216 Query: 181 ASLNNYGSYA 190 +L + Sbjct: 217 EALRRAKAAE 226 >gi|170740832|ref|YP_001769487.1| hypothetical protein M446_2614 [Methylobacterium sp. 4-46] gi|259585789|sp|B0UL53|RIMP_METS4 RecName: Full=Ribosome maturation factor rimP gi|168195106|gb|ACA17053.1| protein of unknown function DUF150 [Methylobacterium sp. 4-46] Length = 201 Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 61/183 (33%), Positives = 99/183 (54%), Gaps = 2/183 (1%) Query: 8 HSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLR 67 H E R+ + G+A ++ +++P +E + FR V++ + + +QI ER DG MT+ Sbjct: 7 HHATEKRLITETGVAARVAQIVEPSLEGLGFRLVRVRVTGQNGCTVQIMAERPDGTMTVE 66 Query: 68 DCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD 127 DCE +S+ ISP+LDV++ I Y LE+SSPGIDRP+VR DF RW GH E+ + Sbjct: 67 DCEAVSRTISPLLDVDDPIGRAYHLEISSPGIDRPLVRAGDFARWAGHEAKVELAVPLEG 126 Query: 128 KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYG 187 +++ G I + + K+ + + A L++TD+L+R SL Sbjct: 127 RKRFRGLIRAPEGATVRI--DLPDAKEGTPASYELRLADIGEAHLVLTDDLIRESLRRGS 184 Query: 188 SYA 190 + A Sbjct: 185 APA 187 >gi|163852119|ref|YP_001640162.1| hypothetical protein Mext_2700 [Methylobacterium extorquens PA1] gi|218530877|ref|YP_002421693.1| hypothetical protein Mchl_2926 [Methylobacterium chloromethanicum CM4] gi|259585785|sp|B7KQK1|RIMP_METC4 RecName: Full=Ribosome maturation factor rimP gi|259585786|sp|A9W685|RIMP_METEP RecName: Full=Ribosome maturation factor rimP gi|163663724|gb|ABY31091.1| protein of unknown function DUF150 [Methylobacterium extorquens PA1] gi|218523180|gb|ACK83765.1| protein of unknown function DUF150 [Methylobacterium chloromethanicum CM4] Length = 251 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 64/184 (34%), Positives = 100/184 (54%) Query: 7 LHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTL 66 + E R+ + G+A ++ +++ IE + FR V++ + +QI ER DG M + Sbjct: 1 MAEPTEKRLVSETGVAARVAQIVEGPIEGLGFRLVRVKISNTNGRTVQIMAERPDGTMGV 60 Query: 67 RDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 +CE +S+AISPILD+E+ + Y LEVSSPGIDRP+VR SDF RW G+ E+ + Sbjct: 61 DECEAVSRAISPILDLEDPVGDAYYLEVSSPGIDRPLVRVSDFERWAGYEAKVELAVPMD 120 Query: 127 DKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNY 186 +++ G I S G + + K +I + L A L++TDEL+R SL Sbjct: 121 GRKRFRGIIGVPSADGTTVPIDLPDVKPGLPSRIDVPLRDLGEAHLVLTDELIRESLRRG 180 Query: 187 GSYA 190 + Sbjct: 181 SAPP 184 >gi|254561863|ref|YP_003068958.1| hypothetical protein METDI3462 [Methylobacterium extorquens DM4] gi|254269141|emb|CAX25105.1| conserved hypothetical protein, UPF0090 protein [Methylobacterium extorquens DM4] Length = 251 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 64/184 (34%), Positives = 100/184 (54%) Query: 7 LHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTL 66 + E R+ + G+A ++ +++ IE + FR V++ + +QI ER DG M + Sbjct: 1 MAEPTEKRLVSETGVAARVAQIVEGPIEGLGFRLVRVKISNTNGRTVQIMAERPDGTMGV 60 Query: 67 RDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 +CE +S+AISPILD+E+ + Y LEVSSPGIDRP+VR SDF RW G+ E+ + Sbjct: 61 DECEAVSRAISPILDLEDPVGDAYYLEVSSPGIDRPLVRVSDFERWAGYEAKVELAVPMD 120 Query: 127 DKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNY 186 +++ G I S G + + K +I + L A L++TDEL+R SL Sbjct: 121 GRKRFRGIIGVPSADGTTVPIDLPDVKPGLPSRIDVPLRDLGEAHLVLTDELIRESLRRG 180 Query: 187 GSYA 190 + Sbjct: 181 SAPP 184 >gi|182678036|ref|YP_001832182.1| hypothetical protein Bind_1050 [Beijerinckia indica subsp. indica ATCC 9039] gi|259585728|sp|B2IIK0|RIMP_BEII9 RecName: Full=Ribosome maturation factor rimP gi|182633919|gb|ACB94693.1| protein of unknown function DUF150 [Beijerinckia indica subsp. indica ATCC 9039] Length = 314 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 60/185 (32%), Positives = 101/185 (54%), Gaps = 6/185 (3%) Query: 11 YEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCE 70 +EPR+ + G+A ++ + PV+ ++ R V++ + + +QI ER DG M + CE Sbjct: 26 HEPRLLQESGIAARVAVLAAPVLADLGLRLVRVKISGQNGTTVQIMAERPDGTMDVEACE 85 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 +S+A+SP+LDVE+ ++ Y LE+SSPGIDRP+VR SDF R G V E+ +++ Sbjct: 86 SVSEALSPVLDVEDPVKQAYHLEISSPGIDRPLVRLSDFERALGQEVRVELKTGLAGRKR 145 Query: 131 LIGKIMGTS------ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLN 184 G I + L + K E ++ + D L ARL++T++L+R +L Sbjct: 146 FRGTIGPIEASSPIGGSKGALRLTRTDAKPEEETEVLLPLDDLHEARLVLTEDLIRQALR 205 Query: 185 NYGSY 189 + Sbjct: 206 AAKAA 210 >gi|259585810|sp|B8IEB0|RIMP_METNO RecName: Full=Ribosome maturation factor rimP Length = 203 Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats. Identities = 59/181 (32%), Positives = 96/181 (53%), Gaps = 2/181 (1%) Query: 9 SKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRD 68 E R+ + G+A ++ +++P +E + FR V++ + + +QI ER DG MT+ D Sbjct: 11 DAAEKRLITETGVAARVAQIVEPSLEGLGFRLVRVRVTGQNGCTVQIMAERPDGTMTVED 70 Query: 69 CEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 CE +S+ ISP+LDV++ I Y LE+SSPGIDRP+VR DF RW GH E+ + + Sbjct: 71 CESVSRTISPLLDVDDPIGRAYHLEISSPGIDRPLVRVGDFARWAGHEAKVELTVPLEGR 130 Query: 129 QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGS 188 ++ G I + + K+ + + A L++TD L+R SL + Sbjct: 131 KRFRGIIRAPEGESVRI--DLPDAKEGTPASYDLRLRDIGEAHLVLTDALIRESLRRGSA 188 Query: 189 Y 189 Sbjct: 189 P 189 >gi|154244253|ref|YP_001415211.1| hypothetical protein Xaut_0296 [Xanthobacter autotrophicus Py2] gi|259645219|sp|A7IC11|RIMP_XANP2 RecName: Full=Ribosome maturation factor rimP gi|154158338|gb|ABS65554.1| protein of unknown function DUF150 [Xanthobacter autotrophicus Py2] Length = 286 Score = 181 bits (459), Expect = 5e-44, Method: Composition-based stats. Identities = 62/184 (33%), Positives = 103/184 (55%), Gaps = 2/184 (1%) Query: 7 LHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTL 66 L EPR+ + G+A ++++ V+ + +R V++ + LQI ER DG M++ Sbjct: 8 LDDPNEPRLITETGVAARVAAIASGVLGALGYRLVRVKVTNRDGGTLQIMAERPDGTMSI 67 Query: 67 RDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 DCE S+A+SP+LDVE+ I YRLE+SSPGIDRP+VR+SDF+RW GH V E+ Sbjct: 68 DDCEAASRALSPVLDVEDPISSAYRLEMSSPGIDRPLVRQSDFVRWAGHEVKVEMARPVD 127 Query: 127 DKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNY 186 +++ G ++G + + + E + + + A+L++TD L+R +L Sbjct: 128 GRKRFRGILIGAEDGIAVVRRLD--APATEEPTVRLPVADIHDAKLMLTDALIREALRAA 185 Query: 187 GSYA 190 + Sbjct: 186 KAAG 189 >gi|240139448|ref|YP_002963923.1| hypothetical protein MexAM1_META1p2893 [Methylobacterium extorquens AM1] gi|240009420|gb|ACS40646.1| conserved hypothetical protein, UPF0090 protein [Methylobacterium extorquens AM1] Length = 251 Score = 180 bits (458), Expect = 6e-44, Method: Composition-based stats. Identities = 64/184 (34%), Positives = 100/184 (54%) Query: 7 LHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTL 66 + E R+ + G+A ++ +++ IE + FR V++ + +QI ER DG M + Sbjct: 1 MAEPTEKRLVSETGVAARVAQIVEGPIEGLGFRLVRVKISNTNGRTVQIMAERPDGTMGV 60 Query: 67 RDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 +CE +S+AISPILD+E+ + Y LEVSSPGIDRP+VR SDF RW G+ E+ + Sbjct: 61 DECEAVSRAISPILDLEDPVGDAYYLEVSSPGIDRPLVRVSDFERWAGYEAKVELAVPMD 120 Query: 127 DKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNY 186 +++ G I S G + + K +I + L A L++TDEL+R SL Sbjct: 121 GRKRFRGIIGVPSADGTTVPIDLPDVKPGLLSRIDVPLRDLGEAHLVLTDELIRESLRRG 180 Query: 187 GSYA 190 + Sbjct: 181 SAPP 184 >gi|39933516|ref|NP_945792.1| hypothetical protein RPA0439 [Rhodopseudomonas palustris CGA009] gi|51316646|sp|Q6NCN2|RIMP_RHOPA RecName: Full=Ribosome maturation factor rimP gi|39647362|emb|CAE25883.1| DUF150 [Rhodopseudomonas palustris CGA009] Length = 259 Score = 180 bits (458), Expect = 6e-44, Method: Composition-based stats. Identities = 63/183 (34%), Positives = 104/183 (56%), Gaps = 2/183 (1%) Query: 8 HSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLR 67 EPR+ + G+A +V +PV+ M +R V+I + + +QI ER DG M + Sbjct: 12 DDLAEPRLVIEPGVAARFCAVAEPVLMAMGYRLVRIKVSGDAGCTVQIMAERPDGTMLID 71 Query: 68 DCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD 127 DCE +S+A+SP+LDV + I+ YRLE+SSPGIDRP+VR+SDF R+ GH+V E+ + Sbjct: 72 DCEAVSRALSPVLDVADPIDRAYRLEISSPGIDRPLVRRSDFARYAGHLVKIEMAVPHQG 131 Query: 128 KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYG 187 +++ G + G +++E + + + + + ARL++TDEL+ S+ Sbjct: 132 RKRYRGLLDGVEGDAVRVQREGATKD--EDPLVLLPMHDIGDARLVLTDELIAESMRRGK 189 Query: 188 SYA 190 Sbjct: 190 QAE 192 >gi|188582067|ref|YP_001925512.1| hypothetical protein Mpop_2822 [Methylobacterium populi BJ001] gi|259585787|sp|B1ZDR1|RIMP_METPB RecName: Full=Ribosome maturation factor rimP gi|179345565|gb|ACB80977.1| protein of unknown function DUF150 [Methylobacterium populi BJ001] Length = 255 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 62/184 (33%), Positives = 101/184 (54%) Query: 7 LHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTL 66 + E R+ + G+A ++ +++ IE + FR V++ + +QI ER DG M + Sbjct: 1 MAEPTEKRLVSETGVAARVAQIVEGPIEGLGFRLVRVKISNTNGCTVQIMAERPDGTMGV 60 Query: 67 RDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 +CE +S+AISPILD+E+ + G Y LE+SSPGIDRP+VR SDF RW G+ E+ + Sbjct: 61 DECETVSRAISPILDLEDPVGGAYYLEISSPGIDRPLVRVSDFERWAGYEAKVELAVPMD 120 Query: 127 DKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNY 186 +++ G + S G + + K +I + L A L++TD+L+R SL Sbjct: 121 GRKRFRGILGVPSADGATVPIDLPDVKPGLPSRIDLPLRDLGEAHLVLTDDLIRESLRRG 180 Query: 187 GSYA 190 + Sbjct: 181 SAPP 184 >gi|192288874|ref|YP_001989479.1| hypothetical protein Rpal_0443 [Rhodopseudomonas palustris TIE-1] gi|226706186|sp|B3QAB7|RIMP_RHOPT RecName: Full=Ribosome maturation factor rimP gi|192282623|gb|ACE99003.1| protein of unknown function DUF150 [Rhodopseudomonas palustris TIE-1] Length = 259 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 63/183 (34%), Positives = 103/183 (56%), Gaps = 2/183 (1%) Query: 8 HSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLR 67 EPR+ + G+A +V +PV+ M +R V+I + + +QI ER DG M + Sbjct: 12 DDLAEPRLVIEPGVAARFCAVAEPVLMAMGYRLVRIKVSGDAGCTVQIMAERPDGTMLID 71 Query: 68 DCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD 127 DCE S+A+SP+LDV + I+ YRLE+SSPGIDRP+VR+SDF R+ GH+V E+ + Sbjct: 72 DCEAASRALSPVLDVADPIDRAYRLEISSPGIDRPLVRRSDFARYAGHLVKIEMAVPHQG 131 Query: 128 KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYG 187 +++ G + G +++E + + + + + ARL++TDEL+ S+ Sbjct: 132 RKRYRGLLDGVEGDAVRVQREGATKD--EDPLVLLPMHDIGDARLVLTDELIAESMRRGK 189 Query: 188 SYA 190 Sbjct: 190 QAE 192 >gi|259585702|sp|A8IG16|RIMP_AZOC5 RecName: Full=Ribosome maturation factor rimP Length = 291 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 66/190 (34%), Positives = 109/190 (57%), Gaps = 2/190 (1%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 M T EPR+ + G+A I++++ PV+ +++ R V++ + QI ER Sbjct: 1 MNETVEALDPNEPRLITESGVAARIAAIVTPVLADLNLRLVRVKVTARDGGTCQIMAERP 60 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 DG+MT+ DCE S+AISP+LDVE+ I G YRLE+SSPGIDRP+VR +DF RW GH V E Sbjct: 61 DGSMTIDDCEAASRAISPVLDVEDPITGAYRLEISSPGIDRPLVRLTDFDRWAGHEVKVE 120 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 + + +++ G ++GT +++ E ++++ + A+L++TD L+ Sbjct: 121 MAVPVDGRKRFRGILIGTRAELAVVKRTD--APKGEEPEVSLPVADIGEAKLVLTDALIT 178 Query: 181 ASLNNYGSYA 190 +L + Sbjct: 179 EALRRAKAAE 188 >gi|118590497|ref|ZP_01547899.1| hypothetical protein SIAM614_02941 [Stappia aggregata IAM 12614] gi|118436960|gb|EAV43599.1| hypothetical protein SIAM614_02941 [Stappia aggregata IAM 12614] Length = 197 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 66/181 (36%), Positives = 109/181 (60%), Gaps = 2/181 (1%) Query: 9 SKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRD 68 S +EPRI + GL ++++++PVIE++ +R V+ + + LQI ER DG MT+ D Sbjct: 2 SAHEPRIVTEQGLDARVAAIVEPVIEDLGYRLVRTKISAQNGCTLQIMAERPDGTMTVED 61 Query: 69 CEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 CE +S+A+SP LDVE+ I Y LEVSSPGIDRP+VR DF RW GH + E+ + + Sbjct: 62 CETVSRAVSPALDVEDPINRAYHLEVSSPGIDRPLVRAGDFNRWAGHELKVEMAVMLDGR 121 Query: 129 QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGS 188 ++ G ++G + ++ E +A+ +++ A+L++TD+L+ A+L + Sbjct: 122 KRFRGTLLGAENGMASIRLPD--VREGEEDTVALPLENIGEAKLVLTDDLITAALQAEKA 179 Query: 189 Y 189 Sbjct: 180 A 180 >gi|259417818|ref|ZP_05741737.1| hypothetical protein SCH4B_3234 [Silicibacter sp. TrichCH4B] gi|259346724|gb|EEW58538.1| hypothetical protein SCH4B_3234 [Silicibacter sp. TrichCH4B] Length = 244 Score = 178 bits (451), Expect = 4e-43, Method: Composition-based stats. Identities = 59/192 (30%), Positives = 97/192 (50%), Gaps = 5/192 (2%) Query: 2 ESTHFLHSK-YEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 + F+ + + ++ +I PVIE++ + V+I L+ K LQI +R Sbjct: 32 RARFFVFGGLMTNDLIAKAAIDRRLAEIITPVIEDLGYELVRIRLMSGKATTLQIMADRP 91 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 DG + + DC +S A+S LDVE+ I Y LEVSSPGIDRP+ R DF + G+ E Sbjct: 92 DGGIEVDDCAAISNAVSATLDVEDPILDAYTLEVSSPGIDRPLTRLKDFDMFEGYEAKLE 151 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 +++ G++ G + + E+ GE + I + FD L A+L++TD+L++ Sbjct: 152 TADLIDGRRRFKGELAGIEDDEVLINIEEHGET----VTIGLKFDWLSDAKLVLTDDLIK 207 Query: 181 ASLNNYGSYAGL 192 L + L Sbjct: 208 EMLRQRKAAGVL 219 >gi|222084329|ref|YP_002542858.1| hypothetical protein Arad_0177 [Agrobacterium radiobacter K84] gi|221721777|gb|ACM24933.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 246 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 79/183 (43%), Positives = 122/183 (66%), Gaps = 2/183 (1%) Query: 7 LHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTL 66 + EPR+ + GL I+++I+PVI M +R V++ L+ + L LQ+ ER+DG+M + Sbjct: 52 ADNINEPRLIVETGLDQRIAAIIEPVIVGMDYRLVRVRLMNQNGLTLQVMAERNDGSMNV 111 Query: 67 RDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 + CEE+S AISP+LDVE+ ++ Y LEVSSPGIDRPMVRKSDF+RWNGH+V CE + Sbjct: 112 QGCEEISTAISPVLDVEDPVDKAYHLEVSSPGIDRPMVRKSDFVRWNGHIVKCETSILVD 171 Query: 127 DKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNY 186 ++++ GKI ++ GF +E+++ E ++ I F +L A+LI+TD+L+R +L Sbjct: 172 NRKRFRGKITDVNDDGFTIERDQVAY--GEEPKVTIPFSTLAEAKLILTDDLIRDALRAD 229 Query: 187 GSY 189 Sbjct: 230 KQA 232 >gi|299133376|ref|ZP_07026571.1| protein of unknown function DUF150 [Afipia sp. 1NLS2] gi|298593513|gb|EFI53713.1| protein of unknown function DUF150 [Afipia sp. 1NLS2] Length = 264 Score = 177 bits (448), Expect = 9e-43, Method: Composition-based stats. Identities = 60/180 (33%), Positives = 106/180 (58%), Gaps = 1/180 (0%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 E R+ + G+A ++++ +PV+E + ++ V+I + E +QI ER DG M + DCE Sbjct: 21 ERRLVVEPGVAARVAAIAEPVLEGLGYQLVRIKISGEAGCTVQIMAERPDGTMLIDDCEA 80 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+A+SP++DV + I+ YRLE+SSPGIDRP+VR+SDF R+ GH+V E+ + +++ Sbjct: 81 ISKALSPVMDVADPIQRAYRLEISSPGIDRPLVRQSDFERYTGHLVKIEMSVPHDGRKRF 140 Query: 132 IGKIMGTSETGFFLEKEK-RGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 G + G + ++ + K E + + + SA L++T+EL+ S+ Sbjct: 141 RGTLEGIENGLVRITRDDVKEHKGAQEADVQLPLADIASANLVLTNELIAESMRRGRDAE 200 >gi|298293855|ref|YP_003695794.1| hypothetical protein Snov_3905 [Starkeya novella DSM 506] gi|296930366|gb|ADH91175.1| protein of unknown function DUF150 [Starkeya novella DSM 506] Length = 270 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 63/178 (35%), Positives = 99/178 (55%), Gaps = 2/178 (1%) Query: 11 YEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCE 70 EPR+ + G A ++ ++ PV+E + FR V++ + LQI ER DG+ + +CE Sbjct: 25 DEPRLVTESGPAARVAGIVGPVLEGLGFRLVRVRISGGSPPTLQIMAERPDGSFGIDECE 84 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 S+AISP+LDVE+ I G Y LE+SSPGIDRP+ R SDF RW GH V E+ + +++ Sbjct: 85 AASRAISPVLDVEDPISGAYNLEMSSPGIDRPLARLSDFERWAGHDVKVEMAVPVDGRKR 144 Query: 131 LIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGS 188 G ++G + + +A+ + ARL++TD L+R +L + Sbjct: 145 FRGILVGAQREEALVRLPDAPADKPD--TVALPISDIGEARLVMTDALIREALRRDKA 200 >gi|27375897|ref|NP_767426.1| hypothetical protein bll0786 [Bradyrhizobium japonicum USDA 110] gi|34222841|sp|Q89WA6|RIMP_BRAJA RecName: Full=Ribosome maturation factor rimP gi|27349035|dbj|BAC46051.1| bll0786 [Bradyrhizobium japonicum USDA 110] Length = 251 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 68/180 (37%), Positives = 111/180 (61%), Gaps = 2/180 (1%) Query: 11 YEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCE 70 EPR+ + G+A +S+V PV++ M +R V+I + E +QI ER DG+M + DCE Sbjct: 15 AEPRLVVEPGVAARVSAVAGPVLQGMGYRLVRIRISGEAGCTVQIMAERPDGSMQIEDCE 74 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 +S+A+SP+LDV + I+ YRLE+SSPGIDRP+VR+SDF R+ GH+V E+ ++ +++ Sbjct: 75 AISRALSPVLDVADPIDRAYRLEISSPGIDRPLVRRSDFERYAGHLVKVEMAVAHEGRKR 134 Query: 131 LIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 G I L+++ K E + ++ + + ARL++TDEL+ S+ + A Sbjct: 135 FRGMIGAVEGDRVHLQRDD--VKAGEERNVLLTMEDISEARLVLTDELIAESMRRGKAAA 192 >gi|86747723|ref|YP_484219.1| hypothetical protein RPB_0597 [Rhodopseudomonas palustris HaA2] gi|123408929|sp|Q2J2K2|RIMP_RHOP2 RecName: Full=Ribosome maturation factor rimP gi|86570751|gb|ABD05308.1| Protein of unknown function DUF150 [Rhodopseudomonas palustris HaA2] Length = 259 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 65/180 (36%), Positives = 104/180 (57%), Gaps = 3/180 (1%) Query: 11 YEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCE 70 EPR+ + G+A +V +PV+ M +R V+I + E +QI ER DG M + DCE Sbjct: 15 DEPRLVVEPGVAARFGAVAEPVLLAMGYRLVRIKVSAEAGCTVQIMAERPDGTMLIEDCE 74 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 +S+A+SP+LDV + IE YRLE+SSPGIDRP+VR+SDF R++GH+V E+ + +++ Sbjct: 75 AVSKALSPVLDVTDPIEKAYRLEISSPGIDRPLVRRSDFARYSGHLVKIEMAVPHQGRKR 134 Query: 131 LIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 G + G +++E + + + + ARL++TDEL+ S+ Sbjct: 135 YRGLLDGVEGDAIRIQREG---VKDEDPLVLLPMHDIGDARLVLTDELIAESMRRGKQAE 191 >gi|49475030|ref|YP_033071.1| hypothetical protein BH02180 [Bartonella henselae str. Houston-1] gi|51316602|sp|Q6G4W4|RIMP_BARHE RecName: Full=Ribosome maturation factor rimP gi|49237835|emb|CAF27030.1| hypothetical protein BH02180 [Bartonella henselae str. Houston-1] Length = 216 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 76/188 (40%), Positives = 115/188 (61%), Gaps = 2/188 (1%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 M T + EPR+F + G+ I++ + P+++ + FR V++ LL L LQI VER Sbjct: 9 MSKTERISDIDEPRLFEENGVEAHIAAFVMPLLKPLGFRLVRVKLLGLNGLTLQIMVERP 68 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 DG+MT+ DCE +S+ +SP+LDV+N+IE Y LE+SSPGIDRP+VRKSDF W GH+ E Sbjct: 69 DGSMTVEDCETVSRTVSPLLDVQNVIERKYHLEISSPGIDRPLVRKSDFFHWQGHIAKIE 128 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 + ++K G + ++ GF L +K + I+I FD ++ A L++TDEL+R Sbjct: 129 TKIILEGRRKFRGTLTNITQDGFTLNTDKAAY--GESMYISIPFDDIIDAHLVLTDELIR 186 Query: 181 ASLNNYGS 188 +L Sbjct: 187 DALKKNKD 194 >gi|163733004|ref|ZP_02140448.1| hypothetical protein RLO149_10100 [Roseobacter litoralis Och 149] gi|161393539|gb|EDQ17864.1| hypothetical protein RLO149_10100 [Roseobacter litoralis Och 149] Length = 231 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 58/178 (32%), Positives = 93/178 (52%), Gaps = 8/178 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ +I PVIE+M F V++ L+ K+ +LQI ++ DG + + DC E+SQ Sbjct: 40 LIAKAAIDRRMAEIITPVIEDMGFELVRVRLMSGKSTILQIMADKPDGGIEVDDCAEISQ 99 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S +LDVE+ I Y LEVSSPGIDRP+ R DF + G+ E +++ G Sbjct: 100 AVSAVLDVEDPILDEYTLEVSSPGIDRPLTRLKDFEMFEGYEAKIETGEMIDGRRRFKGA 159 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + G + E E I + FD L A+L++TD+L++ L + Sbjct: 160 LAGVENDEVLINVE--------EGTIGLKFDWLSDAKLVLTDDLIKEMLRQRKAAGAF 209 >gi|49473873|ref|YP_031915.1| hypothetical protein BQ02060 [Bartonella quintana str. Toulouse] gi|51316597|sp|Q6G0N9|RIMP_BARQU RecName: Full=Ribosome maturation factor rimP gi|49239376|emb|CAF25709.1| hypothetical protein BQ02060 [Bartonella quintana str. Toulouse] Length = 216 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 74/188 (39%), Positives = 118/188 (62%), Gaps = 2/188 (1%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 M T ++ EPR+F + G+ +++++ P+++ + FR V++ LL + L LQI VER Sbjct: 9 MRKTEKMNDIDEPRLFEETGIEAFVAALVIPLLKPLDFRLVRVKLLGQNGLTLQIMVERA 68 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 DG+MT+ DCE +S+ +S +LDV+N+IE Y LE+SSPGIDRP+VRKSDF W GH+ E Sbjct: 69 DGSMTIEDCETVSRTVSHLLDVQNVIERKYHLEISSPGIDRPLVRKSDFFHWQGHIAKIE 128 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 ++ ++K G + ++ G L +K + IAI FD+++ A L++TDEL+R Sbjct: 129 TKITIDGRKKFRGILANITQEGLTLNTDKAAY--GEAMYIAIPFDNIIDAHLVLTDELIR 186 Query: 181 ASLNNYGS 188 +L Sbjct: 187 NALKKNKD 194 >gi|15963989|ref|NP_384342.1| hypothetical protein SMc02911 [Sinorhizobium meliloti 1021] gi|307306401|ref|ZP_07586145.1| protein of unknown function DUF150 [Sinorhizobium meliloti BL225C] gi|307319288|ref|ZP_07598717.1| protein of unknown function DUF150 [Sinorhizobium meliloti AK83] gi|34222989|sp|Q92SW6|RIMP_RHIME RecName: Full=Ribosome maturation factor rimP gi|15073165|emb|CAC41673.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021] gi|306895124|gb|EFN25881.1| protein of unknown function DUF150 [Sinorhizobium meliloti AK83] gi|306902243|gb|EFN32840.1| protein of unknown function DUF150 [Sinorhizobium meliloti BL225C] Length = 205 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 84/181 (46%), Positives = 120/181 (66%), Gaps = 2/181 (1%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 M T + EPR+ + GL ++ +I+PV+ +M FR V++ + + L LQ+ ER+ Sbjct: 1 MSDTTTAENTNEPRLITETGLDRRVADIIEPVLVDMGFRLVRVRMSGQNGLTLQVMTERN 60 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 DG MT+ DCEE+S+AISP+LDVE+ I+ Y LEVSSPGIDRPMVR+SDF+RW GH+V CE Sbjct: 61 DGTMTVEDCEEVSKAISPVLDVEDPIDKAYHLEVSSPGIDRPMVRRSDFIRWQGHLVKCE 120 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 + +++ GKI+ E GF LE+++ E +AI F +L ARLI+TDEL+R Sbjct: 121 TSVMVDGRKRFRGKIVSVDEDGFRLERDQPAY--GEEAAVAIPFTALSEARLILTDELIR 178 Query: 181 A 181 Sbjct: 179 D 179 >gi|327192407|gb|EGE59367.1| hypothetical protein RHECNPAF_224004 [Rhizobium etli CNPAF512] Length = 201 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 80/187 (42%), Positives = 124/187 (66%), Gaps = 2/187 (1%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 M ++ EPR+ + GL ++ +I+PV+ M FR +++ +L + + +Q+ ER+ Sbjct: 1 MSDMTNADNELEPRLITETGLDQRLADIIEPVLVGMGFRLIRVRMLNQNGMTMQVMAERN 60 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 DG MT++DCEE+S AISP+LDVE+ I+ Y LEVSSPGIDRPMVRKSDF+RW GH+V CE Sbjct: 61 DGTMTVQDCEEVSMAISPVLDVEDPIDKEYHLEVSSPGIDRPMVRKSDFVRWQGHLVKCE 120 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 + G++++ GKI+ GF LE+++ E +++I F +L A+LI+TD+L+R Sbjct: 121 TSIMIGNRKRFRGKIVEADADGFTLERDQIAY--GEEPKVSIPFTALSDAKLILTDDLIR 178 Query: 181 ASLNNYG 187 +L Sbjct: 179 DALRADK 185 >gi|328545920|ref|YP_004306029.1| ribosome maturation factor rimP [polymorphum gilvum SL003B-26A1] gi|326415660|gb|ADZ72723.1| Ribosome maturation factor rimP [Polymorphum gilvum SL003B-26A1] Length = 205 Score = 174 bits (440), Expect = 8e-42, Method: Composition-based stats. Identities = 65/178 (36%), Positives = 108/178 (60%), Gaps = 2/178 (1%) Query: 11 YEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCE 70 +E RI + GL ++++++PVIE++ +R V++ + LQI ER DG MT+ DCE Sbjct: 4 HEARIVIEQGLEARVAAIVEPVIEDLGYRLVRVKISAANGCTLQIMAERPDGTMTVEDCE 63 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 E+S+A+SP LDV++ I Y LE+SSPGIDRP+VR DF RW+GHV E+ + +++ Sbjct: 64 EVSRAVSPALDVDDPINRAYHLEISSPGIDRPLVRVGDFDRWSGHVAKVEMSVMQDGRKR 123 Query: 131 LIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGS 188 G ++G + L + + ++ + + ARL++TD+L+RA+L + Sbjct: 124 FRGILLGAGDGTVRLRLTDTPKDVAD--EVRLPLAEIAEARLVLTDDLIRAALQAEKA 179 >gi|92115661|ref|YP_575390.1| hypothetical protein Nham_0028 [Nitrobacter hamburgensis X14] gi|122418985|sp|Q1QS67|RIMP_NITHX RecName: Full=Ribosome maturation factor rimP gi|91798555|gb|ABE60930.1| protein of unknown function DUF150 [Nitrobacter hamburgensis X14] Length = 263 Score = 174 bits (440), Expect = 8e-42, Method: Composition-based stats. Identities = 67/180 (37%), Positives = 113/180 (62%), Gaps = 2/180 (1%) Query: 11 YEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCE 70 EPR+ + G+A +SSV+ PV++ M +R V+I + E +QI ER DG+M + DCE Sbjct: 15 DEPRLVVEPGVAARVSSVVAPVLQGMGYRLVRIKVSGEYGCTVQIMAERPDGSMQIEDCE 74 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 +S+A+SP+LDV + I+ YRLE+SSPGIDRP+VR+SDF R GH+V E+ ++ +++ Sbjct: 75 AISKALSPVLDVADPIDKAYRLEISSPGIDRPLVRRSDFERHAGHLVKVEMAVAHQGRKR 134 Query: 131 LIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 G + G + L ++ ++++E ++ + + + ARL++TDEL+ S+ Sbjct: 135 FRGILQGVKDNAIRLHRDD--VQNVDESEVLLVMEDIADARLVLTDELIAESMRRGKIAE 192 >gi|254502830|ref|ZP_05114981.1| conserved hypothetical protein [Labrenzia alexandrii DFL-11] gi|222438901|gb|EEE45580.1| conserved hypothetical protein [Labrenzia alexandrii DFL-11] Length = 198 Score = 174 bits (440), Expect = 8e-42, Method: Composition-based stats. Identities = 66/181 (36%), Positives = 105/181 (58%), Gaps = 2/181 (1%) Query: 9 SKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRD 68 S EPRI + GL ++++I+PVIE++ +R V+ + LQI ER DG MT+ D Sbjct: 2 SDQEPRIVTEQGLDARVAAIIEPVIEDLGYRLVRTRISAANGCTLQIMAERPDGTMTVDD 61 Query: 69 CEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 CE +S+A+SP LDVE+ I Y LEVSSPGIDRP+VR DF RW GH + E+ + + Sbjct: 62 CETISRAVSPALDVEDPINRAYHLEVSSPGIDRPLVRAGDFDRWAGHEMKVEMDVMQDGR 121 Query: 129 QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGS 188 ++ G ++G + E + + + + + + A+L++TD+L+ A+L + Sbjct: 122 KRFRGTLLGVEGVSAKMRLPDAPEGEAD--TVLLPMEDIGEAKLVLTDDLITAALQAEKA 179 Query: 189 Y 189 Sbjct: 180 A 180 >gi|85714178|ref|ZP_01045167.1| hypothetical protein NB311A_08478 [Nitrobacter sp. Nb-311A] gi|85699304|gb|EAQ37172.1| hypothetical protein NB311A_08478 [Nitrobacter sp. Nb-311A] Length = 259 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 63/180 (35%), Positives = 108/180 (60%), Gaps = 2/180 (1%) Query: 11 YEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCE 70 EPR+ + G+A ++++ PV++ M +R V+I + E LQI ER DG+M + DCE Sbjct: 15 DEPRLVLEPGVAARVATIAAPVLQGMGYRLVRIKVSGEAGCTLQIMAERPDGSMQIEDCE 74 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 +S+ +SP+LDV + I+ YRLE+SSPGIDRP+VR+SDF R+ GH+ E+ ++ +++ Sbjct: 75 TISKMLSPVLDVADPIDRAYRLEISSPGIDRPLVRRSDFERYAGHLAKVEMAVAHQGRKR 134 Query: 131 LIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 G + G + L ++ + N+ + + + + ARL++TDEL+ S+ Sbjct: 135 FRGILRGVEDNAVRLHRDD--VQQDNDADVLLIMEDIADARLVLTDELIAESMRRGKIAE 192 >gi|316931576|ref|YP_004106558.1| hypothetical protein Rpdx1_0181 [Rhodopseudomonas palustris DX-1] gi|315599290|gb|ADU41825.1| protein of unknown function DUF150 [Rhodopseudomonas palustris DX-1] Length = 259 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 63/180 (35%), Positives = 106/180 (58%), Gaps = 2/180 (1%) Query: 11 YEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCE 70 EPR+ + G+A +V +PV+ M +R V+I + E +QI ER DG M + DCE Sbjct: 15 AEPRLVIEPGVAARFCAVAEPVLLAMGYRLVRIKVSGEAGCTVQIMAERPDGTMLIDDCE 74 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 +S+A+SP+LDV + I+ YRLE+SSPGIDRP+VR+SDF R+ GH+V E+ ++ +++ Sbjct: 75 AVSRALSPVLDVADPIDRAYRLEISSPGIDRPLVRRSDFARYAGHLVKVEMAVAHQGRKR 134 Query: 131 LIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 G + G +++++ + + ++ + ARL++TDEL+ S+ Sbjct: 135 FRGLLDGVEGDAVRIQRDE--APKGEDPLVLLAMHDIGDARLVLTDELVAESMRRGKQAE 192 >gi|163757747|ref|ZP_02164836.1| hypothetical protein HPDFL43_20092 [Hoeflea phototrophica DFL-43] gi|162285249|gb|EDQ35531.1| hypothetical protein HPDFL43_20092 [Hoeflea phototrophica DFL-43] Length = 205 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 77/181 (42%), Positives = 114/181 (62%), Gaps = 2/181 (1%) Query: 4 THFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN 63 T S YEPR+ + G+ I+ +++PV+ + R V++ L + L LQI ER DG Sbjct: 2 TDNAASAYEPRLVTETGVDARIAEIVEPVLASIDMRLVRVRLSGQNGLTLQIMAERTDGT 61 Query: 64 MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVL 123 MT+ DCE S+A+SP+LDVE+ +E Y LE+SSPGIDRP+VRKSDF RW GH+ C+ + Sbjct: 62 MTVEDCEAASRALSPVLDVEDPVEKAYHLEISSPGIDRPLVRKSDFERWQGHLARCDASV 121 Query: 124 SSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 +++ G I S+TGF +E+++ E + I F +L A+L++TDEL+R SL Sbjct: 122 LINGRKRFRGFIRDVSDTGFIVERDQPVY--GEENRAEIPFSALAEAKLVLTDELIRESL 179 Query: 184 N 184 Sbjct: 180 R 180 >gi|239833210|ref|ZP_04681539.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301] gi|239825477|gb|EEQ97045.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301] Length = 240 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 66/179 (36%), Positives = 105/179 (58%), Gaps = 2/179 (1%) Query: 10 KYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDC 69 + RI + G+ ++ +++PV+ + FR V++ L LQI ER DG MT+ DC Sbjct: 32 GADERIIRETGIDAKVAGIVEPVLNTLGFRLVRVRLSGLNGQTLQIMAERPDGTMTVDDC 91 Query: 70 EELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ 129 E +S+ ++P+LDVE+ I G Y LE+SSPGIDRP+VRKSDF W GH+ E + ++ Sbjct: 92 ELVSRTVAPVLDVEDPINGKYHLEISSPGIDRPLVRKSDFADWAGHIAKVETSIVHEGRK 151 Query: 130 KLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGS 188 K G+I+ +E ++ +E + I FD + ARL++TD+L+R +L + Sbjct: 152 KFRGRIVLGDAESVVIESDQISY--GSEPVVRIPFDLISDARLVLTDDLIRDALRKDKA 208 >gi|190889788|ref|YP_001976330.1| hypothetical protein RHECIAT_CH0000156 [Rhizobium etli CIAT 652] gi|259586183|sp|B3PXE6|RIMP_RHIE6 RecName: Full=Ribosome maturation factor rimP gi|190695067|gb|ACE89152.1| hypothetical conserved protein [Rhizobium etli CIAT 652] Length = 198 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 79/181 (43%), Positives = 123/181 (67%), Gaps = 2/181 (1%) Query: 7 LHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTL 66 ++ EPR+ + GL ++ +I+PV+ M FR +++ +L + + +Q+ ER+DG MT+ Sbjct: 4 ADNELEPRLITETGLDQRLADIIEPVLVGMGFRLIRVRMLNQNGMTMQVMAERNDGTMTV 63 Query: 67 RDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 +DCEE+S AISP+LDVE+ I+ Y LEVSSPGIDRPMVRKSDF+RW GH+V CE + G Sbjct: 64 QDCEEVSMAISPVLDVEDPIDKEYHLEVSSPGIDRPMVRKSDFVRWQGHLVKCETSIMIG 123 Query: 127 DKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNY 186 ++++ GKI+ GF LE+++ E +++I F +L A+LI+TD+L+R +L Sbjct: 124 NRKRFRGKIVEADADGFTLERDQIAY--GEEPKVSIPFTALSDAKLILTDDLIRDALRAD 181 Query: 187 G 187 Sbjct: 182 K 182 >gi|254510275|ref|ZP_05122342.1| conserved hypothetical protein [Rhodobacteraceae bacterium KLH11] gi|221533986|gb|EEE36974.1| conserved hypothetical protein [Rhodobacteraceae bacterium KLH11] Length = 232 Score = 172 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 4/188 (2%) Query: 5 HFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNM 64 + + + + ++ +I PVIE++ + V+I L+ K +QI ++ DG + Sbjct: 31 DRVENLMTNNLIAKAAIDRRLAEIITPVIEDLGYELVRIRLMSGKTTTMQIMADKPDGGI 90 Query: 65 TLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS 124 + DC E+S A+S LDVE+ I Y LEVSSPGIDRP+ R DF + G+ E Sbjct: 91 EVDDCAEISNAVSATLDVEDPILDAYTLEVSSPGIDRPLTRLKDFETFEGYEAKIETAEL 150 Query: 125 SGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLN 184 +++ G++ G + + E I + FD L A+L++TD+L++ L Sbjct: 151 IDGRRRFKGELAGIEGDEVLINIPEGDETI----TIGLQFDWLSDAKLVLTDDLIKEMLR 206 Query: 185 NYGSYAGL 192 L Sbjct: 207 QRKDAGAL 214 >gi|56694992|ref|YP_165338.1| hypothetical protein SPO0064 [Ruegeria pomeroyi DSS-3] gi|81350793|sp|Q5LWL1|RIMP_SILPO RecName: Full=Ribosome maturation factor rimP gi|56676729|gb|AAV93395.1| conserved hypothetical protein [Ruegeria pomeroyi DSS-3] Length = 208 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 54/178 (30%), Positives = 93/178 (52%), Gaps = 4/178 (2%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ ++ PVI ++ + V+I L+ K+ LQI ++ DG + + DC +S Sbjct: 5 LIAKAAIDRRLAEIVSPVIADLGYELVRIRLMSGKSTTLQIMADKPDGGIEVDDCAAISN 64 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S LDVE+ I Y LEVSSPGIDRP+ R DF + G+ E +++ G+ Sbjct: 65 AVSATLDVEDPILDAYTLEVSSPGIDRPLTRLKDFEMFEGYEAKIETTEMIDGRRRFRGE 124 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + G + ++ GE + I + FD L A+L++TD+L++ L + L Sbjct: 125 LAGIEGNEVLINLDQNGET----VTIGLEFDWLSDAKLVLTDDLIKEMLRQRKAAGVL 178 >gi|325291534|ref|YP_004277398.1| hypothetical protein AGROH133_02929 [Agrobacterium sp. H13-3] gi|325059387|gb|ADY63078.1| hypothetical protein AGROH133_02929 [Agrobacterium sp. H13-3] Length = 198 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 74/178 (41%), Positives = 114/178 (64%), Gaps = 2/178 (1%) Query: 7 LHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTL 66 + +EPR+ + G+ I+ +I+PV+ M + V++ L + + LQ+ ER+DG MT+ Sbjct: 2 ADTVHEPRLITETGIDQRIAEIIEPVLTGMGYLLVRVRLSNQNGMTLQVMAEREDGTMTV 61 Query: 67 RDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 CE +S AISP+LDVE+ ++ Y LEVSSPGIDRPMVRKSDF RW GH+V E + Sbjct: 62 EGCEAVSMAISPVLDVEDPVDKAYHLEVSSPGIDRPMVRKSDFTRWQGHLVKAETSILVE 121 Query: 127 DKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLN 184 ++++ GKI+ GF LE+++ +E + I F +L A+LI+TD+L+R +L Sbjct: 122 NRKRFRGKIVEVDADGFKLERDQIAY--GDEPTVTIPFSALSDAKLILTDDLIRDALR 177 >gi|254780789|ref|YP_003065202.1| hypothetical protein CLIBASIA_03400 [Candidatus Liberibacter asiaticus str. psy62] gi|254040466|gb|ACT57262.1| hypothetical protein CLIBASIA_03400 [Candidatus Liberibacter asiaticus str. psy62] Length = 192 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 192/192 (100%), Positives = 192/192 (100%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD Sbjct: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE Sbjct: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR Sbjct: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 Query: 181 ASLNNYGSYAGL 192 ASLNNYGSYAGL Sbjct: 181 ASLNNYGSYAGL 192 >gi|114705361|ref|ZP_01438269.1| hypothetical protein FP2506_10491 [Fulvimarina pelagi HTCC2506] gi|114540146|gb|EAU43266.1| hypothetical protein FP2506_10491 [Fulvimarina pelagi HTCC2506] Length = 202 Score = 171 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 65/180 (36%), Positives = 106/180 (58%), Gaps = 2/180 (1%) Query: 9 SKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRD 68 ++ E RI + GL I+S+++P IE+ +R V++ + +QI ER DG M + Sbjct: 2 TEKETRIVTEDGLEAKIASIVEPAIEQTGYRLVRVRVSGMNGKTVQIMAERPDGTMDVEG 61 Query: 69 CEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 CEE+S+AISP+L+ E+ ++G Y LE+SSPGIDRP+VR SDF W G ++ E D+ Sbjct: 62 CEEVSRAISPVLETEDPVDGAYHLELSSPGIDRPLVRVSDFETWAGFLMKLETSRLVADR 121 Query: 129 QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGS 188 ++ GKI+ +E+++ + I D++ ARL++TD+L+ ASL + Sbjct: 122 KRYRGKIVKVENGTITIERDQPAY--GEPASVEIPLDAVADARLVLTDDLIEASLKADKA 179 >gi|150398624|ref|YP_001329091.1| hypothetical protein Smed_3438 [Sinorhizobium medicae WSM419] gi|166990840|sp|A6UF26|RIMP_SINMW RecName: Full=Ribosome maturation factor rimP gi|150030139|gb|ABR62256.1| protein of unknown function DUF150 [Sinorhizobium medicae WSM419] Length = 205 Score = 171 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 81/181 (44%), Positives = 119/181 (65%), Gaps = 2/181 (1%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 M T + EPR+ + GL ++ +I+PV+ ++ FR V++ + + L LQ+ ER+ Sbjct: 1 MSDTTTAENANEPRLITETGLDRRVADIIEPVLVDLGFRLVRVRMSGQNGLTLQVMTERN 60 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 DG MT+ DCEE+S+AISP+LDVE+ I+ Y LEVSSPGIDRPMVR+SDF+RW GH++ CE Sbjct: 61 DGTMTVEDCEEVSKAISPVLDVEDPIDKAYHLEVSSPGIDRPMVRRSDFIRWQGHLLKCE 120 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 + +++ GKI+ E GF LE+++ E + I F +L ARLI+TDEL+R Sbjct: 121 TSVLVEGRKRFRGKIVSVDEDGFRLERDQPAY--GEEAGVTIPFTALSEARLILTDELIR 178 Query: 181 A 181 Sbjct: 179 D 179 >gi|86355779|ref|YP_467671.1| hypothetical protein RHE_CH00119 [Rhizobium etli CFN 42] gi|123513435|sp|Q2KDZ2|RIMP_RHIEC RecName: Full=Ribosome maturation factor rimP gi|86279881|gb|ABC88944.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 198 Score = 171 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 79/181 (43%), Positives = 121/181 (66%), Gaps = 2/181 (1%) Query: 7 LHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTL 66 ++ EPR+ + GL ++ +I+PV+ M FR +++ +L + +Q+ ER+DG MT+ Sbjct: 4 ADNELEPRLITETGLDQRLADIIEPVLVGMGFRLIRVRMLNQNGATMQVMAERNDGTMTV 63 Query: 67 RDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 +DCEE+S AISP+LDVE+ I+ Y LEVSSPGIDRPMVRKSDF+RW GH+V CE + G Sbjct: 64 QDCEEVSMAISPVLDVEDPIDKEYHLEVSSPGIDRPMVRKSDFVRWQGHLVKCETSIMIG 123 Query: 127 DKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNY 186 ++++ GKI+ GF LE+++ E ++ I F +L A+LI+TD+L+R +L Sbjct: 124 NRKRFRGKIVEADADGFTLERDQVAY--GEEQKVIIPFTALSDAKLILTDDLIRDALRAD 181 Query: 187 G 187 Sbjct: 182 K 182 >gi|259586221|sp|Q21C34|RIMP_RHOPB RecName: Full=Ribosome maturation factor rimP Length = 262 Score = 171 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 65/180 (36%), Positives = 106/180 (58%), Gaps = 2/180 (1%) Query: 11 YEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCE 70 EPR+ + GL +++V PV++ M +R V+I + E +QI ER DG M + DCE Sbjct: 15 AEPRLVVEPGLGARVAAVAGPVLQGMGYRLVRIKVSGELGCTVQIMAERPDGTMLVEDCE 74 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 +S A+SP+LD+ + +E YRLE+SSPGIDRP+VR+SDF R+ G++V E+ ++ G +++ Sbjct: 75 AISHALSPVLDIADPVERAYRLEISSPGIDRPLVRRSDFERYEGYLVKIEMAVAVGGRKR 134 Query: 131 LIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 G + L +E G +D + + + + SA L++TDEL+ S+ Sbjct: 135 FRGLLGPLQGDAVLLARE--GARDGEDPNSLLPLEDIASANLVLTDELIAESMRRGKIAE 192 >gi|15887444|ref|NP_353125.1| hypothetical protein Atu0090 [Agrobacterium tumefaciens str. C58] gi|34222929|sp|Q8UJ48|RIMP_AGRT5 RecName: Full=Ribosome maturation factor rimP gi|15154957|gb|AAK85910.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 198 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 72/178 (40%), Positives = 113/178 (63%), Gaps = 2/178 (1%) Query: 7 LHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTL 66 + EPR+ + G+ I+ +I+PV+ M + V++ L + + LQ+ ER+DG M + Sbjct: 2 ADTAQEPRLITETGIDQRIAEIIEPVLTGMGYLLVRVRLSNQNGMTLQVMAEREDGTMNV 61 Query: 67 RDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 +DCE +S AISP+LDVE+ +E Y LEVSSPGIDRPMVRK+DF RW GH+V E + Sbjct: 62 QDCEAISMAISPVLDVEDPVEKAYHLEVSSPGIDRPMVRKTDFTRWQGHLVKVETSILVE 121 Query: 127 DKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLN 184 ++++ GKI+ F LE+++ E + + F++L A+LI+TD+L+R +L Sbjct: 122 NRKRFRGKIVEVDADSFKLERDQIAY--GEEPTVVVPFNALSDAKLILTDDLIRDALR 177 >gi|90422001|ref|YP_530371.1| hypothetical protein RPC_0477 [Rhodopseudomonas palustris BisB18] gi|90104015|gb|ABD86052.1| protein of unknown function DUF150 [Rhodopseudomonas palustris BisB18] Length = 272 Score = 170 bits (432), Expect = 7e-41, Method: Composition-based stats. Identities = 65/180 (36%), Positives = 106/180 (58%), Gaps = 2/180 (1%) Query: 11 YEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCE 70 EPR+ + GL +++V PV++ M +R V+I + E +QI ER DG M + DCE Sbjct: 25 AEPRLVVEPGLGARVAAVAGPVLQGMGYRLVRIKVSGELGCTVQIMAERPDGTMLVEDCE 84 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 +S A+SP+LD+ + +E YRLE+SSPGIDRP+VR+SDF R+ G++V E+ ++ G +++ Sbjct: 85 AISHALSPVLDIADPVERAYRLEISSPGIDRPLVRRSDFERYEGYLVKIEMAVAVGGRKR 144 Query: 131 LIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 G + L +E G +D + + + + SA L++TDEL+ S+ Sbjct: 145 FRGLLGPLQGDAVLLARE--GARDGEDPNSLLPLEDIASANLVLTDELIAESMRRGKIAE 202 >gi|254718199|ref|ZP_05180010.1| hypothetical protein Bru83_01396 [Brucella sp. 83/13] gi|265983157|ref|ZP_06095892.1| conserved hypothetical protein [Brucella sp. 83/13] gi|306837713|ref|ZP_07470582.1| Protein of unknown function DUF150 [Brucella sp. NF 2653] gi|306843579|ref|ZP_07476180.1| Protein of unknown function DUF150 [Brucella sp. BO1] gi|264661749|gb|EEZ32010.1| conserved hypothetical protein [Brucella sp. 83/13] gi|306276270|gb|EFM57970.1| Protein of unknown function DUF150 [Brucella sp. BO1] gi|306407271|gb|EFM63481.1| Protein of unknown function DUF150 [Brucella sp. NF 2653] Length = 219 Score = 170 bits (431), Expect = 8e-41, Method: Composition-based stats. Identities = 69/187 (36%), Positives = 107/187 (57%), Gaps = 2/187 (1%) Query: 2 ESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDD 61 T + + RI + G+ ++ +++PVI + FR V++ L LQI ER D Sbjct: 8 NETETPVAVADERIIRETGIDAKVAGIVEPVINTLGFRLVRVRLSGLNGQTLQIMAERPD 67 Query: 62 GNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 G MT+ DCE +S+ ++P+LDVE+ I G Y LE+SSPGIDRP+VRKSDF W GH+ E Sbjct: 68 GTMTVDDCELVSRTVAPVLDVEDPISGKYHLEISSPGIDRPLVRKSDFSDWAGHIAKVET 127 Query: 122 VLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRA 181 + ++K G+I+ +E ++ NE + I FD + ARL++TD+L+R Sbjct: 128 SIVHEGRKKFRGRIVVGDADSVTIESDQISY--GNEPVVRIPFDLISDARLVLTDDLIRD 185 Query: 182 SLNNYGS 188 +L + Sbjct: 186 ALRKDKA 192 >gi|241207072|ref|YP_002978168.1| hypothetical protein Rleg_4390 [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860962|gb|ACS58629.1| protein of unknown function DUF150 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 201 Score = 170 bits (431), Expect = 8e-41, Method: Composition-based stats. Identities = 77/187 (41%), Positives = 122/187 (65%), Gaps = 2/187 (1%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 M ++ EPR+ + GL ++ +I+PV+ ++ FR +++ ++ + +Q+ ERD Sbjct: 1 MSDLTNADNEREPRLITETGLDQRLADIIEPVLVDLGFRLIRVRMMNQNGATMQVMAERD 60 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 DG MT++DCEE+S AISP+LDVE+ ++ Y LEVSSPGIDRPMVRKSDF+RW GH+V CE Sbjct: 61 DGTMTVQDCEEVSMAISPVLDVEDPVDKEYHLEVSSPGIDRPMVRKSDFVRWQGHLVKCE 120 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 + ++++ GKI+ GF LE+++ E ++ I F +L A+LI+TD+L+R Sbjct: 121 TSILIDNRKRFRGKIVEAGTDGFTLERDQIAY--GEEQKVTIPFTALSDAKLILTDDLIR 178 Query: 181 ASLNNYG 187 +L Sbjct: 179 DALRADK 185 >gi|116249894|ref|YP_765732.1| hypothetical protein RL0128 [Rhizobium leguminosarum bv. viciae 3841] gi|166977860|sp|Q1MN36|RIMP_RHIL3 RecName: Full=Ribosome maturation factor rimP gi|115254542|emb|CAK05616.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 201 Score = 170 bits (431), Expect = 9e-41, Method: Composition-based stats. Identities = 76/187 (40%), Positives = 122/187 (65%), Gaps = 2/187 (1%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 M ++ EPR+ + GL ++ +I+PV+ ++ FR +++ ++ + +Q+ ER+ Sbjct: 1 MSDLTNADNEREPRLITETGLDQRLADIIEPVLVDLGFRLIRVRMMNQNGATMQVMAERN 60 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 DG MT++DCEE+S AISP+LDVE+ ++ Y LEVSSPGIDRPMVRKSDF+RW GH+V CE Sbjct: 61 DGTMTVQDCEEVSMAISPVLDVEDPVDKEYHLEVSSPGIDRPMVRKSDFVRWQGHLVKCE 120 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 + ++++ GKI+ GF LE+++ E ++ I F +L A+LI+TD+L+R Sbjct: 121 TSILIDNRKRFRGKIVEAGTDGFTLERDQIAY--GEEQKVTIPFTALSDAKLILTDDLIR 178 Query: 181 ASLNNYG 187 +L Sbjct: 179 DALRADK 185 >gi|254465218|ref|ZP_05078629.1| hypothetical protein RBY4I_1824 [Rhodobacterales bacterium Y4I] gi|206686126|gb|EDZ46608.1| hypothetical protein RBY4I_1824 [Rhodobacterales bacterium Y4I] Length = 196 Score = 170 bits (431), Expect = 9e-41, Method: Composition-based stats. Identities = 56/178 (31%), Positives = 97/178 (54%), Gaps = 4/178 (2%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ ++ PVIE++ + V+I L+ K+ LQI ++ +G + + DC E+S Sbjct: 5 LIAKAAIDRRLAEIVTPVIEDLGYELVRIRLMSGKSTTLQIMADKPNGGIEVDDCAEISN 64 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S LDVE+ I Y LEVSSPGIDRP+ R DF + G+ E + G +++ G+ Sbjct: 65 AVSAALDVEDPIIDAYALEVSSPGIDRPLTRMKDFEMFEGYEAKLETAETVGGRRRFKGE 124 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + GT + E +G+ + + + FD L A+L++TD+L++ L L Sbjct: 125 LAGTEGDEVLINIEDQGQT----VTVGLKFDWLSDAKLVLTDDLIKEMLRQRKEAGTL 178 >gi|259585712|sp|B9JGT7|RIMP_AGRRK RecName: Full=Ribosome maturation factor rimP Length = 198 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 79/183 (43%), Positives = 122/183 (66%), Gaps = 2/183 (1%) Query: 7 LHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTL 66 + EPR+ + GL I+++I+PVI M +R V++ L+ + L LQ+ ER+DG+M + Sbjct: 4 ADNINEPRLIVETGLDQRIAAIIEPVIVGMDYRLVRVRLMNQNGLTLQVMAERNDGSMNV 63 Query: 67 RDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 + CEE+S AISP+LDVE+ ++ Y LEVSSPGIDRPMVRKSDF+RWNGH+V CE + Sbjct: 64 QGCEEISTAISPVLDVEDPVDKAYHLEVSSPGIDRPMVRKSDFVRWNGHIVKCETSILVD 123 Query: 127 DKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNY 186 ++++ GKI ++ GF +E+++ E ++ I F +L A+LI+TD+L+R +L Sbjct: 124 NRKRFRGKITDVNDDGFTIERDQVAY--GEEPKVTIPFSTLAEAKLILTDDLIRDALRAD 181 Query: 187 GSY 189 Sbjct: 182 KQA 184 >gi|119385318|ref|YP_916374.1| hypothetical protein Pden_2591 [Paracoccus denitrificans PD1222] gi|259586172|sp|A1B584|RIMP_PARDP RecName: Full=Ribosome maturation factor rimP gi|119375085|gb|ABL70678.1| protein of unknown function DUF150 [Paracoccus denitrificans PD1222] Length = 206 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 58/176 (32%), Positives = 90/176 (51%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ +I PVIE++ F V+I L K LQI +R +G + + DC ++S Sbjct: 4 LIAKTAIDRRLAEIISPVIEDLGFELVRIRLQGGKTATLQIMADRPEGGINVDDCADIST 63 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S ILDVE+ +E Y LEVSSPGIDRP+ R DF + G+ E +++ G Sbjct: 64 AVSAILDVEDPLEDAYHLEVSSPGIDRPLTRLKDFETFEGYEARLETNQPIDGRKRFKGV 123 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 + G + E E+ I ++FD L A+L++TDEL+ L Sbjct: 124 LAGVEKGEGGDEVLLNIEEGGETQTIGLNFDWLSDAKLVLTDELIAEMLRQKKDAG 179 >gi|153008086|ref|YP_001369301.1| hypothetical protein Oant_0750 [Ochrobactrum anthropi ATCC 49188] gi|167016790|sp|A6WWW8|RIMP_OCHA4 RecName: Full=Ribosome maturation factor rimP gi|151559974|gb|ABS13472.1| protein of unknown function DUF150 [Ochrobactrum anthropi ATCC 49188] Length = 224 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 70/187 (37%), Positives = 108/187 (57%), Gaps = 2/187 (1%) Query: 2 ESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDD 61 L + + RI + G+ ++S+I+PVI + FR V++ L LQI ER D Sbjct: 8 NEAETLAAGADERIIRETGIDAKVASIIEPVINTLGFRLVRVRLSGLNGQTLQIMAERPD 67 Query: 62 GNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 G MT+ DCE +S+ ++P+LDVE+ I G Y LE+SSPGIDRP+VRKSDF W GH+ E Sbjct: 68 GTMTVDDCELVSRTVAPVLDVEDPISGKYHLEISSPGIDRPLVRKSDFADWAGHIAKVET 127 Query: 122 VLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRA 181 + ++K G+I+ +E ++ +E + I FD + ARL++TD+L+R Sbjct: 128 SVVHEGRKKFRGRIVLGDAESVVIESDQISY--GSEPVVRIPFDLISDARLVLTDDLIRD 185 Query: 182 SLNNYGS 188 +L + Sbjct: 186 ALRKDKA 192 >gi|148251678|ref|YP_001236263.1| hypothetical protein BBta_0054 [Bradyrhizobium sp. BTAi1] gi|166919104|sp|A5E863|RIMP_BRASB RecName: Full=Ribosome maturation factor rimP gi|146403851|gb|ABQ32357.1| hypothetical protein BBta_0054 [Bradyrhizobium sp. BTAi1] Length = 253 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 61/179 (34%), Positives = 109/179 (60%), Gaps = 2/179 (1%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 EPR+ + G+A +++V +PV++ M +R V+I + E +Q+ ER DG M + DCE Sbjct: 16 EPRLVVEPGVAARVAAVAEPVLQGMGYRLVRIRISGEAGCTVQVMAERPDGTMQIEDCEA 75 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+A+SP+LD+ + I+ YRLE+SSPGIDRP+VR++DF R GH+V E+ ++ ++++ Sbjct: 76 VSRALSPVLDIADPIDRAYRLEISSPGIDRPLVRRTDFERHIGHLVKIEMAVAHQNRKRF 135 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 G I G G + ++ + + + + + A+L++TDEL+ S+ + Sbjct: 136 RGIITGLDGDGVCITRDDVAKD--QDPSVVLPMTDIGDAKLVLTDELIAESMRRGKAAE 192 >gi|17988251|ref|NP_540885.1| hypothetical protein BMEI1968 [Brucella melitensis bv. 1 str. 16M] gi|23503010|ref|NP_699137.1| hypothetical protein BR2162 [Brucella suis 1330] gi|148560565|ref|YP_001259956.1| hypothetical protein BOV_2074 [Brucella ovis ATCC 25840] gi|161620070|ref|YP_001593957.1| hypothetical protein BCAN_A2204 [Brucella canis ATCC 23365] gi|163844175|ref|YP_001628580.1| hypothetical protein BSUIS_A1999 [Brucella suis ATCC 23445] gi|225853587|ref|YP_002733820.1| hypothetical protein BMEA_A2222 [Brucella melitensis ATCC 23457] gi|254690293|ref|ZP_05153547.1| hypothetical protein Babob68_08992 [Brucella abortus bv. 6 str. 870] gi|254694781|ref|ZP_05156609.1| hypothetical protein Babob3T_08988 [Brucella abortus bv. 3 str. Tulya] gi|254700791|ref|ZP_05162619.1| hypothetical protein Bsuib55_08022 [Brucella suis bv. 5 str. 513] gi|254705160|ref|ZP_05166988.1| hypothetical protein Bsuib36_14811 [Brucella suis bv. 3 str. 686] gi|254709136|ref|ZP_05170947.1| hypothetical protein BpinB_02482 [Brucella pinnipedialis B2/94] gi|254713439|ref|ZP_05175250.1| hypothetical protein BcetM6_08809 [Brucella ceti M644/93/1] gi|254716205|ref|ZP_05178016.1| hypothetical protein BcetM_07186 [Brucella ceti M13/05/1] gi|256030661|ref|ZP_05444275.1| hypothetical protein BpinM2_08407 [Brucella pinnipedialis M292/94/1] gi|256045765|ref|ZP_05448643.1| hypothetical protein Bmelb1R_14765 [Brucella melitensis bv. 1 str. Rev.1] gi|256112484|ref|ZP_05453405.1| hypothetical protein Bmelb3E_07358 [Brucella melitensis bv. 3 str. Ether] gi|256158663|ref|ZP_05456546.1| hypothetical protein BcetM4_07321 [Brucella ceti M490/95/1] gi|256254067|ref|ZP_05459603.1| hypothetical protein BcetB_07163 [Brucella ceti B1/94] gi|256258546|ref|ZP_05464082.1| hypothetical protein Babob9C_14597 [Brucella abortus bv. 9 str. C68] gi|256262929|ref|ZP_05465461.1| conserved hypothetical protein [Brucella melitensis bv. 2 str. 63/9] gi|256370557|ref|YP_003108068.1| hypothetical protein BMI_I2183 [Brucella microti CCM 4915] gi|260563061|ref|ZP_05833547.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|260567371|ref|ZP_05837841.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] gi|260755833|ref|ZP_05868181.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870] gi|260884858|ref|ZP_05896472.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|261215108|ref|ZP_05929389.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya] gi|261217979|ref|ZP_05932260.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261221208|ref|ZP_05935489.1| conserved hypothetical protein [Brucella ceti B1/94] gi|261316636|ref|ZP_05955833.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261321171|ref|ZP_05960368.1| hypothetical protein BAIG_01745 [Brucella ceti M644/93/1] gi|261751300|ref|ZP_05995009.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261755865|ref|ZP_05999574.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|265987708|ref|ZP_06100265.1| hypothetical protein BALG_00285 [Brucella pinnipedialis M292/94/1] gi|265992182|ref|ZP_06104739.1| hypothetical protein BAMG_02674 [Brucella melitensis bv. 1 str. Rev.1] gi|265993920|ref|ZP_06106477.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|265997169|ref|ZP_06109726.1| hypothetical protein BAPG_00290 [Brucella ceti M490/95/1] gi|294851386|ref|ZP_06792059.1| hypothetical protein BAZG_00287 [Brucella sp. NVSL 07-0026] gi|297247385|ref|ZP_06931103.1| hypothetical protein BAYG_00286 [Brucella abortus bv. 5 str. B3196] gi|54040492|sp|P67213|RIMP_BRUSU RecName: Full=Ribosome maturation factor rimP gi|54042664|sp|P67212|RIMP_BRUME RecName: Full=Ribosome maturation factor rimP gi|166980272|sp|A5VTA9|RIMP_BRUO2 RecName: Full=Ribosome maturation factor rimP gi|189039426|sp|B0CK08|RIMP_BRUSI RecName: Full=Ribosome maturation factor rimP gi|189039778|sp|A9M9Z1|RIMP_BRUC2 RecName: Full=Ribosome maturation factor rimP gi|254801690|sp|C0RG44|RIMP_BRUMB RecName: Full=Ribosome maturation factor rimP gi|17984019|gb|AAL53149.1| protein associated with nus operon [Brucella melitensis bv. 1 str. 16M] gi|23349050|gb|AAN31052.1| conserved hypothetical protein [Brucella suis 1330] gi|148371822|gb|ABQ61801.1| conserved hypothetical protein [Brucella ovis ATCC 25840] gi|161336881|gb|ABX63186.1| hypothetical protein BCAN_A2204 [Brucella canis ATCC 23365] gi|163674898|gb|ABY39009.1| Hypothetical protein BSUIS_A1999 [Brucella suis ATCC 23445] gi|225641952|gb|ACO01866.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457] gi|256000720|gb|ACU49119.1| hypothetical protein BMI_I2183 [Brucella microti CCM 4915] gi|260153077|gb|EEW88169.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|260156889|gb|EEW91969.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] gi|260675941|gb|EEX62762.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870] gi|260874386|gb|EEX81455.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|260916715|gb|EEX83576.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya] gi|260919792|gb|EEX86445.1| conserved hypothetical protein [Brucella ceti B1/94] gi|260923068|gb|EEX89636.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261293861|gb|EEX97357.1| hypothetical protein BAIG_01745 [Brucella ceti M644/93/1] gi|261295859|gb|EEX99355.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261741053|gb|EEY28979.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261745618|gb|EEY33544.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|262551637|gb|EEZ07627.1| hypothetical protein BAPG_00290 [Brucella ceti M490/95/1] gi|262764901|gb|EEZ10822.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|263003248|gb|EEZ15541.1| hypothetical protein BAMG_02674 [Brucella melitensis bv. 1 str. Rev.1] gi|263092803|gb|EEZ16978.1| conserved hypothetical protein [Brucella melitensis bv. 2 str. 63/9] gi|264659905|gb|EEZ30166.1| hypothetical protein BALG_00285 [Brucella pinnipedialis M292/94/1] gi|294819975|gb|EFG36974.1| hypothetical protein BAZG_00287 [Brucella sp. NVSL 07-0026] gi|297174554|gb|EFH33901.1| hypothetical protein BAYG_00286 [Brucella abortus bv. 5 str. B3196] gi|326410160|gb|ADZ67225.1| conserved hypothetical protein [Brucella melitensis M28] gi|326539878|gb|ADZ88093.1| conserved hypothetical protein [Brucella melitensis M5-90] Length = 219 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 69/187 (36%), Positives = 107/187 (57%), Gaps = 2/187 (1%) Query: 2 ESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDD 61 T + + RI + G+ ++ +++PVI + FR V++ L LQI ER D Sbjct: 8 NETETPVAVADERIIRETGIDAKVAGIVEPVINTLGFRLVRVRLSGLNGQTLQIMAERPD 67 Query: 62 GNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 G MT+ DCE +S+ ++P+LDVE+ I G Y LE+SSPGIDRP+VRKSDF W GH+ E Sbjct: 68 GTMTVDDCELVSRTVAPVLDVEDPISGKYHLEISSPGIDRPLVRKSDFSDWAGHIAKVET 127 Query: 122 VLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRA 181 + ++K G+I+ +E ++ NE + I FD + ARL++TD+L+R Sbjct: 128 SIVHEGRKKFRGRIVVGEADSVTIESDQISY--GNEPVVRIPFDLISDARLVLTDDLIRD 185 Query: 182 SLNNYGS 188 +L + Sbjct: 186 ALRKDKA 192 >gi|62290999|ref|YP_222792.1| hypothetical protein BruAb1_2135 [Brucella abortus bv. 1 str. 9-941] gi|82700908|ref|YP_415482.1| hypothetical protein BAB1_2162 [Brucella melitensis biovar Abortus 2308] gi|189025211|ref|YP_001935979.1| hypothetical protein BAbS19_I20230 [Brucella abortus S19] gi|237816501|ref|ZP_04595494.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A] gi|254696409|ref|ZP_05158237.1| hypothetical protein Babob28_01503 [Brucella abortus bv. 2 str. 86/8/59] gi|254731322|ref|ZP_05189900.1| hypothetical protein Babob42_09020 [Brucella abortus bv. 4 str. 292] gi|260546262|ref|ZP_05822002.1| conserved hypothetical protein [Brucella abortus NCTC 8038] gi|260759056|ref|ZP_05871404.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|260760781|ref|ZP_05873124.1| conserved hypothetical protein [Brucella abortus bv. 2 str. 86/8/59] gi|75496020|sp|Q57AA3|RIMP_BRUAB RecName: Full=Ribosome maturation factor rimP gi|91208402|sp|Q2YQS0|RIMP_BRUA2 RecName: Full=Ribosome maturation factor rimP gi|259585733|sp|B2S9F3|RIMP_BRUA1 RecName: Full=Ribosome maturation factor rimP gi|62197131|gb|AAX75431.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941] gi|82617009|emb|CAJ12118.1| Domain of unknown function DUF150 [Brucella melitensis biovar Abortus 2308] gi|189020783|gb|ACD73505.1| Domain of unknown function DUF150 [Brucella abortus S19] gi|237788568|gb|EEP62783.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A] gi|260096369|gb|EEW80245.1| conserved hypothetical protein [Brucella abortus NCTC 8038] gi|260669374|gb|EEX56314.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|260671213|gb|EEX58034.1| conserved hypothetical protein [Brucella abortus bv. 2 str. 86/8/59] Length = 219 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 69/187 (36%), Positives = 107/187 (57%), Gaps = 2/187 (1%) Query: 2 ESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDD 61 T + + RI + G+ ++ +++PVI + FR V++ L LQI ER D Sbjct: 8 NETETPVAVADERIIRETGIDAKVAGIVEPVINTLGFRLVRVRLSGLNGQTLQIMAERPD 67 Query: 62 GNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 G MT+ DCE +S+ ++P+LDVE+ I G Y LE+SSPGIDRP+VRKSDF W GH+ E Sbjct: 68 GTMTVDDCELVSRTVAPVLDVEDPISGKYHLEISSPGIDRPLVRKSDFSDWAGHIAKVET 127 Query: 122 VLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRA 181 + ++K G+I+ +E ++ NE + I FD + ARL++TD+L+R Sbjct: 128 SIVHEGRKKFRGRIVVGEADSVTIESDQISY--GNEPVVRIPFDLISDARLVLTDDLIRD 185 Query: 182 SLNNYGS 188 +L + Sbjct: 186 ALRKDKA 192 >gi|260431716|ref|ZP_05785687.1| hypothetical protein SL1157_0822 [Silicibacter lacuscaerulensis ITI-1157] gi|260415544|gb|EEX08803.1| hypothetical protein SL1157_0822 [Silicibacter lacuscaerulensis ITI-1157] Length = 196 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 56/178 (31%), Positives = 90/178 (50%), Gaps = 4/178 (2%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ +I PVIE++ + V+I L+ K LQI ++ DG + + DC E+S Sbjct: 5 LIAKAAIDRRLAEIITPVIEDLGYELVRIRLMSGKQTTLQIMADKPDGGIEVDDCAEISN 64 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S LDVE+ I Y LEVSSPGIDRP+ R DF + G+ E +++ G+ Sbjct: 65 AVSATLDVEDPILDAYTLEVSSPGIDRPLTRLKDFEMFEGYEAKLETTELIDGRRRFKGE 124 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + G + E + I + FD L A+L++TD+L++ L L Sbjct: 125 LAGVEGDEVLINIPNGDET----VTIGLQFDWLSDAKLVLTDDLIKEMLRQRKDAGAL 178 >gi|110677787|ref|YP_680794.1| hypothetical protein RD1_0389 [Roseobacter denitrificans OCh 114] gi|123065971|sp|Q16D35|RIMP_ROSDO RecName: Full=Ribosome maturation factor rimP gi|109453903|gb|ABG30108.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114] Length = 196 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 60/178 (33%), Positives = 95/178 (53%), Gaps = 8/178 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ +I PVIE+M F V++ L+ K+ +LQI +R DG + + DC E+SQ Sbjct: 5 LIAKAAIDRRMAEIITPVIEDMGFELVRVRLMSGKSTILQIMADRPDGGIEVDDCAEISQ 64 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S +LDVE+ I Y LEVSSPGIDRP+ R DF + G+ E +++ G Sbjct: 65 AVSAVLDVEDPILDEYTLEVSSPGIDRPLTRLKDFEMFEGYEAKIETGDMVDGRRRFKGA 124 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + G + + E E I + FD L A+L++TD+L++ L + L Sbjct: 125 LAGVEDDEVLINIE--------EGTIGLKFDWLSDAKLVLTDDLIKEMLRQRKAAGAL 174 >gi|99082749|ref|YP_614903.1| hypothetical protein TM1040_2909 [Ruegeria sp. TM1040] gi|122397499|sp|Q1GCH5|RIMP_SILST RecName: Full=Ribosome maturation factor rimP gi|99039029|gb|ABF65641.1| protein of unknown function DUF150 [Ruegeria sp. TM1040] Length = 203 Score = 169 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 58/178 (32%), Positives = 94/178 (52%), Gaps = 4/178 (2%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ +I PVIE++ + V+I L+ K LQI +R DG + + DC +S Sbjct: 5 LIAKAAIDRRLAEIITPVIEDLGYELVRIRLMSGKTTTLQIMADRPDGGIEVDDCAAISN 64 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S LDVE+ I Y LEVSSPGIDRP+ R DF + G+ E +++ G+ Sbjct: 65 AVSATLDVEDPILDAYTLEVSSPGIDRPLTRLKDFDMFEGYEAKLETADLIDGRRRFKGE 124 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + G + + E+ GE + I + FD L A+L++TD+L++ L + L Sbjct: 125 LAGIEDDEVLINIEEHGET----VTIGLKFDWLSDAKLVLTDDLIKEMLRQRKAAGVL 178 >gi|149912924|ref|ZP_01901458.1| hypothetical protein RAZWK3B_03010 [Roseobacter sp. AzwK-3b] gi|149813330|gb|EDM73156.1| hypothetical protein RAZWK3B_03010 [Roseobacter sp. AzwK-3b] Length = 190 Score = 169 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 58/178 (32%), Positives = 93/178 (52%), Gaps = 8/178 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ +I PVIE+M F V++ L+ K LLQI ER +G + + DC ++S Sbjct: 5 LIAKAAIDRRLAEIITPVIEDMGFELVRVRLMGGKTHLLQIMAERPEGGIEVDDCAKISN 64 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S +LDVE+ + Y LEVSSPGIDRP+ R DF + G+ E +++ G Sbjct: 65 AVSAVLDVEDPVTDPYTLEVSSPGIDRPLTRLKDFADFEGYEAKIETSELIDGRKRFKGV 124 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + G + + E E + + FD L A+L++TDEL++ L + L Sbjct: 125 LAGVEDDEVLINIE--------EGTVGLKFDWLSDAKLVLTDELIKEMLKARKAAGTL 174 >gi|256060122|ref|ZP_05450304.1| hypothetical protein Bneo5_07156 [Brucella neotomae 5K33] gi|261324099|ref|ZP_05963296.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261300079|gb|EEY03576.1| conserved hypothetical protein [Brucella neotomae 5K33] Length = 219 Score = 169 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 69/187 (36%), Positives = 107/187 (57%), Gaps = 2/187 (1%) Query: 2 ESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDD 61 T + + RI + G+ ++ +++PVI + FR V++ L LQI ER D Sbjct: 8 NETETPVAVADERIIRETGIDAKVAGIVEPVINTLGFRLVRVRLSGLNGQTLQIMAERPD 67 Query: 62 GNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 G MT+ DCE +S+ ++P+LDVE+ I G Y LE+SSPGIDRP+VRKSDF W GH+ E Sbjct: 68 GTMTVDDCELVSRTVAPVLDVEDPISGKYHLEISSPGIDRPLVRKSDFSDWAGHITKVET 127 Query: 122 VLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRA 181 + ++K G+I+ +E ++ NE + I FD + ARL++TD+L+R Sbjct: 128 SIVHEGRKKFRGRIVVGEADSVTIESDQISY--GNEPVVRIPFDLISDARLVLTDDLIRD 185 Query: 182 SLNNYGS 188 +L + Sbjct: 186 ALRKDKA 192 >gi|254475663|ref|ZP_05089049.1| hypothetical protein RR11_1501 [Ruegeria sp. R11] gi|214029906|gb|EEB70741.1| hypothetical protein RR11_1501 [Ruegeria sp. R11] Length = 196 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 60/178 (33%), Positives = 95/178 (53%), Gaps = 4/178 (2%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ +I PVIE++ F V+I L+ K LQI ++ DG + + DC E+S Sbjct: 5 LIAKAAIDRRLAEIITPVIEDLGFELVRIRLMSGKTTTLQIMADKPDGGIEVDDCAEISN 64 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S LDVE+ I Y LEVSSPGIDRP+ R DF + G+ E +++ G+ Sbjct: 65 AVSATLDVEDPILDAYALEVSSPGIDRPLTRLKDFDMFEGYEAKIETTELIDGRRRFKGE 124 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + G E + E+ GE + I + FD L A+L++TD+L++ L + L Sbjct: 125 LAGVEEDEVLINIEEHGET----VTIGLKFDWLSDAKLVLTDDLIKEMLRQRKAAGTL 178 >gi|222147146|ref|YP_002548103.1| hypothetical protein Avi_0164 [Agrobacterium vitis S4] gi|259585691|sp|B9JYK3|RIMP_AGRVS RecName: Full=Ribosome maturation factor rimP gi|221734136|gb|ACM35099.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 204 Score = 168 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 80/184 (43%), Positives = 116/184 (63%), Gaps = 2/184 (1%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 M EPR+ + GL I+ +I+PVI E+ F V++ +L + + LQI ER Sbjct: 1 MSEHVPADEAPEPRLITETGLDRRIADIIEPVIVELGFELVRVRILNQNGMTLQIMAERK 60 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 DG MT+ DCEELS AISP+LDVE+ ++ Y LEVSSPGIDRPMVR SDF RW G+++ CE Sbjct: 61 DGTMTVEDCEELSMAISPVLDVEDPVDKEYHLEVSSPGIDRPMVRASDFTRWQGNLLKCE 120 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 + ++++ GKI + GF LE+++ E ++ I F +L A+LI+TD+L+R Sbjct: 121 TSILIDNRKRFRGKIADVTPDGFILERDQVAY--GEEPRLTIPFTALAEAKLILTDDLVR 178 Query: 181 ASLN 184 +L Sbjct: 179 DALR 182 >gi|110636251|ref|YP_676459.1| hypothetical protein Meso_3927 [Mesorhizobium sp. BNC1] gi|123352956|sp|Q11BD1|RIMP_MESSB RecName: Full=Ribosome maturation factor rimP gi|110287235|gb|ABG65294.1| protein of unknown function DUF150 [Chelativorans sp. BNC1] Length = 220 Score = 168 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 66/177 (37%), Positives = 109/177 (61%), Gaps = 2/177 (1%) Query: 11 YEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCE 70 + RI + G A +++++ PV++ + +R V++ L + L LQI ER DG MT+ DCE Sbjct: 2 QDDRIIRETGAAARVAAIVMPVLDALGYRLVRVRLSAQDGLTLQIMAERPDGTMTVDDCE 61 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 E+S+A+SP LDVE+ I+ Y+LE+SSPGIDRP+VR SDF GH+ E + +++ Sbjct: 62 EVSRAVSPALDVEDPIDSAYQLEISSPGIDRPLVRLSDFQAALGHLAKVETSVMVDGRKR 121 Query: 131 LIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYG 187 G+I+G + +E++K E + + I D++ A+L++TD L+R +L Sbjct: 122 FRGQIVGCTGETLTIERDKVAEGEAPLAE--IPLDAISDAKLVLTDALIREALKKDK 176 >gi|227824068|ref|YP_002828041.1| hypothetical protein NGR_c35650 [Sinorhizobium fredii NGR234] gi|254765072|sp|C3MC63|RIMP_RHISN RecName: Full=Ribosome maturation factor rimP gi|227343070|gb|ACP27288.1| conserved hypothetical protein [Sinorhizobium fredii NGR234] Length = 205 Score = 168 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 82/181 (45%), Positives = 118/181 (65%), Gaps = 2/181 (1%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 M EPR+ + GL I+ +I+PV+ +M FR V++ + + L LQI ER+ Sbjct: 1 MSDPTTAEIANEPRLITETGLDRRIADIIEPVLVQMGFRLVRVRMSGQNGLTLQIMTERN 60 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 DG MT+ DCE++S+A+SP+LDVE+ I+ Y LEVSSPGIDRPMVRKSDF+RW GH++ CE Sbjct: 61 DGTMTVEDCEDVSKAVSPVLDVEDPIDKAYHLEVSSPGIDRPMVRKSDFVRWQGHLMKCE 120 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 + +++ GKI+ E GF LE+++ E +AI F +L ARLI+TD+L+R Sbjct: 121 TSIMVDGRKRFRGKIVSVDEEGFRLERDQPAY--GEEAVVAIPFTALSDARLILTDDLIR 178 Query: 181 A 181 Sbjct: 179 D 179 >gi|217978444|ref|YP_002362591.1| protein of unknown function DUF150 [Methylocella silvestris BL2] gi|259585790|sp|B8EIB0|RIMP_METSB RecName: Full=Ribosome maturation factor rimP gi|217503820|gb|ACK51229.1| protein of unknown function DUF150 [Methylocella silvestris BL2] Length = 279 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 63/171 (36%), Positives = 101/171 (59%), Gaps = 2/171 (1%) Query: 11 YEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCE 70 EPR+ + G+A I+ + PV+ ++ +R V++ L + + +QI ER DG MT+ DCE Sbjct: 16 AEPRLVAETGVAARIAHIATPVLADLGYRLVRVKLSAQDGMTVQIMAERPDGAMTVNDCE 75 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 +S A+SP LDVE++++ YRLE+SSPGIDRP+VR SDF R E+ L +++ Sbjct: 76 AVSAALSPALDVEDVVKQAYRLEISSPGIDRPLVRVSDFRRALDQEARIELRLGLDGRKR 135 Query: 131 LIGKIMGTSETG--FFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELL 179 G I G + G + E+ K ++ + D L A+L++T+EL+ Sbjct: 136 FRGLIKGVTGAGAAAVVTLERVDAKPGEAVEAVLPLDDLAEAKLVLTEELI 186 >gi|296448219|ref|ZP_06890115.1| protein of unknown function DUF150 [Methylosinus trichosporium OB3b] gi|296254259|gb|EFH01390.1| protein of unknown function DUF150 [Methylosinus trichosporium OB3b] Length = 251 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 68/183 (37%), Positives = 103/183 (56%), Gaps = 3/183 (1%) Query: 11 YEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCE 70 EPR+ G+ G+A I+ + +PV+ ++ +R V+ +L + ++LQI ER DG MT+ DCE Sbjct: 15 DEPRLCGETGVAARIAHIAEPVLAQLGYRLVRARILSQNGVILQIMAERPDGTMTIEDCE 74 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG-DKQ 129 SQA+SP LDVE+ I YRLE+SSPGIDRP+VR SDF R G E+ L ++ Sbjct: 75 AASQALSPELDVEDAIADAYRLELSSPGIDRPLVRVSDFRRAIGQEAKIELTLPLASGRK 134 Query: 130 KLIGKIMGTSET--GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYG 187 + G I+ E++ E + + L A+L++T+ L+R SL Sbjct: 135 RFRGDIIAVEGEGREAVATLERKDAPPDEEKTVRLPLRDLDEAKLMLTEALIRESLRAGK 194 Query: 188 SYA 190 + A Sbjct: 195 ADA 197 >gi|323136837|ref|ZP_08071918.1| protein of unknown function DUF150 [Methylocystis sp. ATCC 49242] gi|322398154|gb|EFY00675.1| protein of unknown function DUF150 [Methylocystis sp. ATCC 49242] Length = 255 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 66/180 (36%), Positives = 100/180 (55%), Gaps = 3/180 (1%) Query: 11 YEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCE 70 EPR+ + G+A ++ + +PV+ ++ FR V++ LL++ LQI ER DG MT+ DCE Sbjct: 14 DEPRLVSETGVAARVAHLAEPVLAQLGFRLVRVRLLQQNGQTLQIMAERPDGTMTIDDCE 73 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG-DKQ 129 SQA+SP LDV ++I YRLE+SSPG+DRP+VR SDF R GH E+ ++ Sbjct: 74 AASQALSPELDVADVIANEYRLEISSPGVDRPLVRVSDFARAVGHEARIELTHPVESGRK 133 Query: 130 KLIGKIMGTSETG--FFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYG 187 + G I G L E+ + E + + L +L++T+ L+R SL Sbjct: 134 RFRGVIQAVEGEGRNAKLTLERLDARSDEEKTVVLPLADLDEGKLMLTEALIRESLRAGK 193 >gi|225626527|ref|ZP_03784566.1| Protein of unknown function DUF150 [Brucella ceti str. Cudo] gi|260169565|ref|ZP_05756376.1| hypothetical protein BruF5_14639 [Brucella sp. F5/99] gi|261759093|ref|ZP_06002802.1| conserved hypothetical protein [Brucella sp. F5/99] gi|225618184|gb|EEH15227.1| Protein of unknown function DUF150 [Brucella ceti str. Cudo] gi|261739077|gb|EEY27073.1| conserved hypothetical protein [Brucella sp. F5/99] Length = 219 Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 68/187 (36%), Positives = 106/187 (56%), Gaps = 2/187 (1%) Query: 2 ESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDD 61 T + + RI + G+ ++ +++PVI + FR V++ L LQI ER D Sbjct: 8 NETETPVAVADERIIRETGIDAKVAGIVEPVINTLGFRLVRVRLSGLNGQTLQIMAERPD 67 Query: 62 GNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 G MT+ DCE +S+ ++P+LDVE+ I G Y LE+SSPGIDRP+VRKSDF W GH+ E Sbjct: 68 GTMTVDDCELVSRTVAPVLDVEDPISGKYHLEISSPGIDRPLVRKSDFSDWAGHIAKVET 127 Query: 122 VLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRA 181 + ++K G+I+ +E ++ NE + I FD + ARL++TD+ +R Sbjct: 128 SIVHEGRKKFRGRIVVGEADSVTIESDQISY--GNEPVVRIPFDLISDARLVLTDDFIRD 185 Query: 182 SLNNYGS 188 +L + Sbjct: 186 ALRKDKA 192 >gi|86136806|ref|ZP_01055384.1| hypothetical protein MED193_14067 [Roseobacter sp. MED193] gi|85826130|gb|EAQ46327.1| hypothetical protein MED193_14067 [Roseobacter sp. MED193] Length = 196 Score = 167 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 57/178 (32%), Positives = 95/178 (53%), Gaps = 4/178 (2%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ ++ PVIE++ + V+I L+ K LQI ++ +G + + DC +S Sbjct: 5 LIAKAAIDRRLAEILIPVIEDLGYELVRIRLMSGKTTTLQIMADKPEGGIEVDDCAVVSS 64 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S LDVE+ I Y LEVSSPGIDRP+ R DF + G+ E G +++ G+ Sbjct: 65 AVSATLDVEDPILDAYTLEVSSPGIDRPLTRLKDFDMFEGYEAKLETDELVGGRRRFKGE 124 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + GT E + E +G+ + I + FD L A+L++TD+L+ L + L Sbjct: 125 LAGTEEDEVLINIEDQGKT----VTIGLKFDWLSDAKLVLTDDLITEMLRQRKAAGTL 178 >gi|221640657|ref|YP_002526919.1| hypothetical protein RSKD131_2558 [Rhodobacter sphaeroides KD131] gi|254765045|sp|B9KPN3|RIMP_RHOSK RecName: Full=Ribosome maturation factor rimP gi|221161438|gb|ACM02418.1| Hypothetical Protein RSKD131_2558 [Rhodobacter sphaeroides KD131] Length = 204 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 59/176 (33%), Positives = 91/176 (51%), Gaps = 3/176 (1%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ ++ PVIE M F V++ L+ K LQI +R DG + + +C E+S Sbjct: 4 LVAKTAIDRRLADIVTPVIEGMGFELVRLRLMSGKTRTLQIMADRPDGGIVVDECAEIST 63 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S LDVE+ IE +Y LEVSSPGIDRP+ R DF W G+ E +++ G+ Sbjct: 64 AVSAALDVEDPIEENYTLEVSSPGIDRPLTRLKDFDVWTGYEARIETTELIDGRRRFKGE 123 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 + GT + E + I + FD L A+LI+T+EL+ L + Sbjct: 124 LAGTEGDEVLITIED---GRDGYVTIGLKFDWLADAKLILTEELIAEMLRQKKASG 176 >gi|159046100|ref|YP_001534894.1| hypothetical protein Dshi_3560 [Dinoroseobacter shibae DFL 12] gi|189040162|sp|A8LQ53|RIMP_DINSH RecName: Full=Ribosome maturation factor rimP gi|157913860|gb|ABV95293.1| protein of unknown function DUF150 [Dinoroseobacter shibae DFL 12] Length = 196 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 57/176 (32%), Positives = 92/176 (52%), Gaps = 8/176 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + L I++++ PVIE++ + V++ ++ K+ LQI E+ +G + + DC +S Sbjct: 4 LIAKTTLDQRIAALVTPVIEDLGYELVRLRVMSGKSPTLQIMAEKPEGGIEVDDCARIST 63 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 +S LDVE+ IE +Y LEVSSPGIDRP+ R DF W G+ E +++ G Sbjct: 64 EVSATLDVEDPIEDNYTLEVSSPGIDRPLTRLKDFDTWVGYEAKIETTELIEGRRRFKGA 123 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 + GT +E E E I + F+ L A+L++TD+L+R L Sbjct: 124 LAGTEGDEVLIEIE--------EGTIGLKFEWLSDAKLVLTDDLIRDVLKGRKDAG 171 >gi|77464743|ref|YP_354247.1| hypothetical protein RSP_1162 [Rhodobacter sphaeroides 2.4.1] gi|91208409|sp|Q3IYN8|RIMP_RHOS4 RecName: Full=Ribosome maturation factor rimP gi|77389161|gb|ABA80346.1| hypothetical protein RSP_1162 [Rhodobacter sphaeroides 2.4.1] Length = 204 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 59/176 (33%), Positives = 92/176 (52%), Gaps = 3/176 (1%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ ++ PVIE M F V++ L+ K LQI +R DG + + +C E+S Sbjct: 4 LVAKTAIDRRLADIVTPVIEGMGFELVRLRLMSGKTRTLQIMADRPDGGIVVDECAEIST 63 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S LDVE+ IE +Y LEVSSPGIDRP+ R DF W G+ E +++ G+ Sbjct: 64 AVSAALDVEDPIEENYTLEVSSPGIDRPLTRLKDFEVWTGYEARIETTELIDGRRRFKGE 123 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 + GT + E + + I + FD L A+LI+T+EL+ L + Sbjct: 124 LAGTEGDEVLITIED---GRDSYVTIGLKFDWLADAKLILTEELIAEMLRQKKASG 176 >gi|146278787|ref|YP_001168946.1| hypothetical protein Rsph17025_2754 [Rhodobacter sphaeroides ATCC 17025] gi|166988606|sp|A4WW77|RIMP_RHOS5 RecName: Full=Ribosome maturation factor rimP gi|145557028|gb|ABP71641.1| protein of unknown function DUF150 [Rhodobacter sphaeroides ATCC 17025] Length = 204 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 60/176 (34%), Positives = 93/176 (52%), Gaps = 3/176 (1%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ ++ PVIE M F V++ L+ K LQI +R DG + + +C ++S Sbjct: 4 LVAKTAIDRRLADIVTPVIEGMGFELVRLRLMSGKTRTLQIMADRPDGGIVVDECADIST 63 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S +LDVE+ IE +Y LEVSSPGIDRP+ R DF W G+ E +++ G+ Sbjct: 64 AVSAVLDVEDPIEDNYTLEVSSPGIDRPLTRLKDFDAWAGYEARIETAELIDGRRRFKGE 123 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 + GT + E E + I + FD L A+LI+TDEL+ L + Sbjct: 124 LAGTEGDEVLITIEDGKEGFV---TIGLKFDWLSDAKLILTDELIAEMLRQKKASG 176 >gi|209551641|ref|YP_002283558.1| hypothetical protein Rleg2_4070 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|226706118|sp|B5ZW32|RIMP_RHILW RecName: Full=Ribosome maturation factor rimP gi|209537397|gb|ACI57332.1| protein of unknown function DUF150 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 201 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 77/187 (41%), Positives = 122/187 (65%), Gaps = 2/187 (1%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 M ++ EPR+ + GL ++ +I+PV+ + FR +++ +L + + +Q+ ER+ Sbjct: 1 MSDMTNAGNELEPRLITETGLDQRLADIIEPVLIGIGFRLIRVRMLNQNGVTMQVMAERN 60 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 DG MT++DCEE+S AISP+LDVE+ ++ Y LEVSSPGIDRPMVRKSDF+RW GH+V CE Sbjct: 61 DGTMTVQDCEEVSMAISPVLDVEDPVDKEYHLEVSSPGIDRPMVRKSDFVRWQGHLVKCE 120 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 + ++++ GKI+ GF LE+++ E ++ I F +L A+LI+TD+L+R Sbjct: 121 TSILIDNRKRFRGKIVEAGVDGFTLERDQVAY--GEEQKVTIPFTALSDAKLILTDDLIR 178 Query: 181 ASLNNYG 187 +L Sbjct: 179 DALRADK 185 >gi|126463583|ref|YP_001044697.1| hypothetical protein Rsph17029_2823 [Rhodobacter sphaeroides ATCC 17029] gi|166988525|sp|A3PNK9|RIMP_RHOS1 RecName: Full=Ribosome maturation factor rimP gi|126105247|gb|ABN77925.1| protein of unknown function DUF150 [Rhodobacter sphaeroides ATCC 17029] Length = 204 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 59/176 (33%), Positives = 92/176 (52%), Gaps = 3/176 (1%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ ++ PVIE M F V++ L+ K LQI +R DG + + +C E+S Sbjct: 4 LVAKTAIDRRLADIVTPVIEGMGFELVRLRLMSGKTRTLQIMADRPDGGIVVDECAEIST 63 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S LDVE+ IE +Y LEVSSPGIDRP+ R DF W G+ E +++ G+ Sbjct: 64 AVSAALDVEDPIEENYTLEVSSPGIDRPLTRLKDFDVWTGYEARIETTELIDGRRRFKGE 123 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 + GT + E + + I + FD L A+LI+T+EL+ L + Sbjct: 124 LAGTEGDEVLITIED---GRDSYVTIGLKFDWLADAKLILTEELIAEMLRQKKASG 176 >gi|240849884|ref|YP_002971272.1| hypothetical protein Bgr_02280 [Bartonella grahamii as4aup] gi|240267007|gb|ACS50595.1| hypothetical protein Bgr_02280 [Bartonella grahamii as4aup] Length = 216 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 73/187 (39%), Positives = 117/187 (62%), Gaps = 2/187 (1%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 M + + EPR+F + G+ +++++ P+++ + FR V++ LL + L LQI VER Sbjct: 9 MNEAEKISNLDEPRLFEEDGIEAQVAALVIPLLKPLGFRLVRVKLLGQNGLTLQIMVERA 68 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 DG+MT+ DCE +S+ +SP+LDV+N+IE Y LE+SSPGIDRP+VRKSDF W GH+ E Sbjct: 69 DGSMTVEDCETVSRTVSPLLDVQNVIERKYHLEISSPGIDRPLVRKSDFFHWQGHLAKIE 128 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 ++ ++K G + ++ GF L +K + ISF +++A L++TDEL+R Sbjct: 129 TKITIDGRRKFRGTLTNITQDGFILNTDKAAYGEAMYTP--ISFCDIINAHLVLTDELIR 186 Query: 181 ASLNNYG 187 +L Sbjct: 187 DALKKNK 193 >gi|332559636|ref|ZP_08413958.1| ribosome maturation protein RimP [Rhodobacter sphaeroides WS8N] gi|332277348|gb|EGJ22663.1| ribosome maturation protein RimP [Rhodobacter sphaeroides WS8N] Length = 204 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 59/176 (33%), Positives = 92/176 (52%), Gaps = 3/176 (1%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ ++ PVIE M F V++ L+ K LQI +R DG + + +C E+S Sbjct: 4 LVAKTAIDRRLADIVTPVIEGMGFELVRLRLMSGKTRTLQIMADRPDGGIVVDECAEIST 63 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S LDVE+ IE +Y LEVSSPGIDRP+ R DF W G+ E +++ G+ Sbjct: 64 AVSAALDVEDPIEENYTLEVSSPGIDRPLTRLKDFDVWTGYEARIETTELIDGRRRFKGE 123 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 + GT + E + + I + FD L A+LI+T+EL+ L + Sbjct: 124 LAGTEGDEVLITIED---GRDSYVTIGLKFDWLSDAKLILTEELIAEMLRQKKASG 176 >gi|163737948|ref|ZP_02145364.1| hypothetical protein RGBS107_06039 [Phaeobacter gallaeciensis BS107] gi|161388564|gb|EDQ12917.1| hypothetical protein RGBS107_06039 [Phaeobacter gallaeciensis BS107] Length = 196 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 58/178 (32%), Positives = 92/178 (51%), Gaps = 4/178 (2%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ +I PVIE++ F V+I L+ K LQI ++ DG + + C E+S Sbjct: 5 LIAKAAIDRRLAEIITPVIEDLGFELVRIRLMSGKTTTLQIMADKPDGGIEVDGCAEISN 64 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S LDVE+ I Y LEVSSPGIDRP+ R DF + G+ E +++ G+ Sbjct: 65 AVSATLDVEDPILDSYALEVSSPGIDRPLTRLKDFEMFEGYEAKIETSELIDGRRRFKGE 124 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + G + E+ GE I + FD L A+L++TD+L++ L + L Sbjct: 125 LAGVEGDEVLINIEEHGETI----TIGLKFDWLSDAKLVLTDDLIKEMLRQRKAAGTL 178 >gi|294675769|ref|YP_003576384.1| hypothetical protein RCAP_rcc00212 [Rhodobacter capsulatus SB 1003] gi|294474589|gb|ADE83977.1| protein of unknown function DUF150 [Rhodobacter capsulatus SB 1003] Length = 199 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 61/176 (34%), Positives = 95/176 (53%), Gaps = 4/176 (2%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + G+ ++ +I P IE + F V+I + ++ LLQI +R +G + + DC +S Sbjct: 4 LIAKTGIDRRLADIIGPTIEGLGFELVRIRMQGGRHPLLQIMADRPEGGIDVDDCGAIST 63 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S +LDVE+ IE Y LEVSSPGIDRP+ R DF W G+ E +++ G Sbjct: 64 AVSAVLDVEDPIEEKYTLEVSSPGIDRPLTRLKDFDVWEGYEARIETEEQIDGRKRFKGI 123 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 + GT + +E E +G ++ I + FD L A+LI+TDEL+ L + Sbjct: 124 LRGTEDDEVLIEIENQG----EQVTIGLKFDWLSDAKLILTDELIAEMLRQRKAAG 175 >gi|163867514|ref|YP_001608713.1| hypothetical protein Btr_0242 [Bartonella tribocorum CIP 105476] gi|259585727|sp|A9IMU4|RIMP_BART1 RecName: Full=Ribosome maturation factor rimP gi|161017160|emb|CAK00718.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476] Length = 208 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 73/188 (38%), Positives = 117/188 (62%), Gaps = 2/188 (1%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 M + + EPR+F + G+ +++++ P+++ + FR V++ LL + L LQI VER Sbjct: 1 MNEAEKISNLDEPRLFEEDGIEARVAALVIPLLKPLGFRLVRVKLLGQNGLTLQIMVERA 60 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 DG++T+ DCE +S+ +SP+LDVEN+IE Y LE+SSPGIDRP+VRKSDF W GH+ E Sbjct: 61 DGSLTVEDCETVSRTVSPLLDVENVIERKYHLEISSPGIDRPLVRKSDFFHWQGHLAKIE 120 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 ++ ++K G + ++ GF L +K + +ISF ++ A L++TDEL+R Sbjct: 121 TKITIDGRRKFRGTLTNITQDGFILNADKAAYGEAMYT--SISFCDIIGAHLVLTDELIR 178 Query: 181 ASLNNYGS 188 +L Sbjct: 179 DALKKNKD 186 >gi|163742657|ref|ZP_02150043.1| hypothetical protein RG210_07209 [Phaeobacter gallaeciensis 2.10] gi|161384242|gb|EDQ08625.1| hypothetical protein RG210_07209 [Phaeobacter gallaeciensis 2.10] Length = 196 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 58/178 (32%), Positives = 93/178 (52%), Gaps = 4/178 (2%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ +I PVIE++ F V+I L+ K LQI ++ DG + + C E+S Sbjct: 5 LIAKAAIDRRLAEIITPVIEDLGFELVRIRLMSGKTTTLQIMADKPDGGIEVDGCAEISN 64 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S LDVE+ I Y LEVSSPGIDRP+ R DF + G+ E +++ G+ Sbjct: 65 AVSATLDVEDPILDSYALEVSSPGIDRPLTRLKDFEMFEGYEAKIETSELIDGRRRFKGE 124 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + G + + E+ GE I + FD L A+L++TD+L++ L + L Sbjct: 125 LAGVEDDEVLINIEEHGETI----TIGLKFDWLSDAKLVLTDDLIKEMLRQRKAAGTL 178 >gi|149202948|ref|ZP_01879919.1| hypothetical protein RTM1035_19436 [Roseovarius sp. TM1035] gi|149143494|gb|EDM31530.1| hypothetical protein RTM1035_19436 [Roseovarius sp. TM1035] Length = 191 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 52/176 (29%), Positives = 90/176 (51%), Gaps = 8/176 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ +I PVIE++ + V++ L+ + LQI ++ +G + + DC +S Sbjct: 5 LIAKAAIDRRLAEIITPVIEDLGYELVRVRLMGGQYHTLQIMADKPEGGIEVDDCAAIST 64 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S +LDVE+ + Y LEVSSPGIDRP+ R DF + G+ E +++ G Sbjct: 65 AVSAVLDVEDPLVEAYTLEVSSPGIDRPLTRLKDFEMFEGYEAKIETTELIDGRRRFKGV 124 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 + G + + E E I + FD L A+L++TDEL++ L + Sbjct: 125 LAGVEGSEVLINVE--------EGTIGLEFDWLSDAKLVLTDELIKEMLRQRKAAG 172 >gi|154254056|ref|YP_001414880.1| hypothetical protein Plav_3625 [Parvibaculum lavamentivorans DS-1] gi|259586173|sp|A7HZ90|RIMP_PARL1 RecName: Full=Ribosome maturation factor rimP gi|154158006|gb|ABS65223.1| protein of unknown function DUF150 [Parvibaculum lavamentivorans DS-1] Length = 207 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 57/177 (32%), Positives = 91/177 (51%), Gaps = 2/177 (1%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 + + G+A + ++ E F V++ + LQI ER DG+MT+ DC E Sbjct: 21 DTHLIAPPGVARRVFEQLRAPAEGAGFEIVRVRFGVQDGQTLQIMAERPDGSMTVEDCAE 80 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 LS+ +S +LDVE+ I G Y LE+SS GIDRP+ R DF RW+G V + +++ Sbjct: 81 LSRMLSALLDVEDPIPGEYHLEISSAGIDRPLTRPKDFERWSGFEVKVGLSEPLSGRKRF 140 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGS 188 G + G + +E + G + + F L A+L+++D+L+R SL G Sbjct: 141 RGILQGVEDDEVLVECDIEGF--SEPQVLGLPFRQLSEAKLVMSDDLIRESLKRQGP 195 >gi|85705697|ref|ZP_01036794.1| hypothetical protein ROS217_10367 [Roseovarius sp. 217] gi|85669687|gb|EAQ24551.1| hypothetical protein ROS217_10367 [Roseovarius sp. 217] Length = 191 Score = 165 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 54/176 (30%), Positives = 90/176 (51%), Gaps = 8/176 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ +I PVIE++ + V++ L+ + LQI ++ DG + + DC +S Sbjct: 5 LIAKAAIDRRMAEIITPVIEDLGYELVRVRLMGGQYHTLQIMADKPDGGIEVDDCAVIST 64 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S +LDVE+ + Y LEVSSPGIDRP+ R DF + G+ E +++ G Sbjct: 65 AVSAVLDVEDPLVEAYTLEVSSPGIDRPLTRLKDFEAFEGYEAKIETTELIDGRRRFKGV 124 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 + G T + E E I + FD L A+L++TDEL++ L + Sbjct: 125 LAGVEGTEVLINVE--------EGTIGLEFDWLSDAKLVLTDELIKEMLRQRKAAG 172 >gi|90420534|ref|ZP_01228441.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1] gi|90335262|gb|EAS49015.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1] Length = 232 Score = 165 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 65/171 (38%), Positives = 105/171 (61%), Gaps = 2/171 (1%) Query: 9 SKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRD 68 + RI + GL G ++ +++P IE++ +R V++ + LQI ER DG MT+ D Sbjct: 32 TTATDRIVKEQGLEGRVAEIVEPAIEQIGYRLVRVRTSGLNGMTLQIMAERPDGTMTVED 91 Query: 69 CEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 CE +S+A+SP+LDV++ I+ Y LEVSSPGIDRP+VRK DF W G ++ E ++ Sbjct: 92 CEAVSRAVSPVLDVDDPIDKAYHLEVSSPGIDRPLVRKGDFETWAGFLMKLETNRLINER 151 Query: 129 QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELL 179 ++ GKI+ + +E+++ E + I FD++ ARLI+TD+L+ Sbjct: 152 KRYRGKIVAVGDEAITVERDQPAE--GEPGAVEIPFDAIGEARLILTDDLI 200 >gi|114762089|ref|ZP_01441557.1| hypothetical protein 1100011001331_R2601_14160 [Pelagibaca bermudensis HTCC2601] gi|114545113|gb|EAU48116.1| hypothetical protein R2601_14160 [Roseovarius sp. HTCC2601] Length = 195 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 57/176 (32%), Positives = 91/176 (51%), Gaps = 3/176 (1%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ ++ PVIE++ F V++ L+ K LQI ER +G + + +C ++S Sbjct: 4 LIAKSAIDRRLAEIVTPVIEDLGFELVRLRLMSGKTATLQIMAERPEGGIEVDECADIST 63 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S +LDVE+ I Y LEVSSPGIDRP+ R DF + G+ E +++ G Sbjct: 64 AVSAVLDVEDPIIDAYALEVSSPGIDRPLTRLKDFDTYEGYEAKIETQEMIDGRKRWRGV 123 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 + G + E G E I + FD L A+LI+TD+L+R L + Sbjct: 124 LAGIEGSEVLFNIEGEG---GEEQTIGLQFDWLSDAKLILTDDLIRDMLRARKAQE 176 >gi|89052532|ref|YP_507983.1| hypothetical protein Jann_0041 [Jannaschia sp. CCS1] gi|122499897|sp|Q28WF4|RIMP_JANSC RecName: Full=Ribosome maturation factor rimP gi|88862081|gb|ABD52958.1| protein of unknown function DUF150 [Jannaschia sp. CCS1] Length = 194 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 55/176 (31%), Positives = 92/176 (52%), Gaps = 4/176 (2%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ ++ P IE + F V+I ++ K LQI ER DG + + +C ++S Sbjct: 4 LIAKTSMDRRMAEIVTPSIEALGFEVVRIRVMGGKTNTLQIMAERPDGGIDVDECAQISN 63 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 AIS +LDVE+ +E Y LEVSSPGIDRP+ R DF + G+ E G +++ G Sbjct: 64 AISVLLDVEDPLEDAYALEVSSPGIDRPLTRLKDFETFEGYEAKLETTEMIGGQRRFKGV 123 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 + G + + E+ + + ++FD L A+L++TDEL++ L Sbjct: 124 LAGVEDDEVLVNLEQ----GSETVTVGLNFDWLSDAKLVLTDELIKEMLKQRKDAG 175 >gi|319408014|emb|CBI81668.1| conserved hypothetical protein [Bartonella schoenbuchensis R1] Length = 211 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 72/187 (38%), Positives = 116/187 (62%), Gaps = 2/187 (1%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 + T +++ EPR+F + G+ G +++++ P+++ +S+R +++ L LQI ER Sbjct: 4 INETETINNIDEPRLFKEDGIEGRVAALVSPLLKPLSYRLIRVKFSGLNGLTLQIMAERT 63 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 DG MT+ DCE +S+ +SP LDV+NIIE Y LE+SSPGIDRP+VRKSDF +W GHV E Sbjct: 64 DGTMTIEDCEIISRTVSPFLDVQNIIERKYHLEISSPGIDRPLVRKSDFFKWQGHVAKIE 123 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 + +QK G + ++ F L +K ++ + + I F + +ARL++TDEL+R Sbjct: 124 TGVVINGRQKFRGTLTNITQNSFTLNTDKASHGEIAD--VLIPFADVTNARLVLTDELIR 181 Query: 181 ASLNNYG 187 +L Sbjct: 182 DALKKDK 188 >gi|161170253|gb|ABX59223.1| uncharacterized protein conserved in bacteria [uncultured marine bacterium EB000_55B11] gi|297183782|gb|ADI19905.1| hypothetical protein [uncultured marine bacterium EB000_55B11] Length = 222 Score = 164 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 59/181 (32%), Positives = 95/181 (52%), Gaps = 8/181 (4%) Query: 6 FLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMT 65 F + + + + ++S++QPVIE++ + V+I L+ K LQI ++ +G + Sbjct: 34 FFYVRKMSDLIAKSAIDKRMASIVQPVIEDLGYELVRIRLMSGKATTLQIMADKPNGGID 93 Query: 66 LRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS 125 + DC ++S IS ILDVE+ IE Y LEVSSPG+DRP+ R DF WNG + E Sbjct: 94 VNDCSKISTEISAILDVEDPIEAEYALEVSSPGMDRPLTRLKDFQTWNGFEIKVETSELI 153 Query: 126 GDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 +++ G G + +E + I + F+ L A+L++TDEL+ AS Sbjct: 154 DGQRRFKGLSRGIEDNDVLIEIPQ--------GTIGLDFEWLSDAKLVLTDELVAASQKG 205 Query: 186 Y 186 Sbjct: 206 R 206 >gi|329113269|ref|ZP_08242052.1| Ribosome maturation factor RimP [Acetobacter pomorum DM001] gi|326697410|gb|EGE49068.1| Ribosome maturation factor RimP [Acetobacter pomorum DM001] Length = 201 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 55/178 (30%), Positives = 98/178 (55%), Gaps = 8/178 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-MTLRDCEELS 73 + GL ++++I P +E+M + V++++L + +QI +R DG+ + + DCE +S Sbjct: 14 LSTHSGLEARVAALIAPAVEDMGYEIVRVAVLGRERPTVQIMADRKDGSLINVEDCERIS 73 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 A+ +LDVE+ I G + LEVSS GIDRP+ R D+ R+ GH E++L +++ G Sbjct: 74 HAVGAVLDVEDPIPGAWTLEVSSAGIDRPLTRAKDWNRFAGHQAKAEVLLPVNGRRRFSG 133 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAG 191 ++G+ T + + ++A+ + L ARL++TD L+ AS G Sbjct: 134 VVLGSDGTVARMRLDD-------GTEVALPLEELRRARLVLTDALIEASARMVQPAPG 184 >gi|260429224|ref|ZP_05783201.1| hypothetical protein CSE45_3569 [Citreicella sp. SE45] gi|260419847|gb|EEX13100.1| hypothetical protein CSE45_3569 [Citreicella sp. SE45] Length = 198 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 59/176 (33%), Positives = 91/176 (51%), Gaps = 4/176 (2%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ ++ PVIE+M F V+I L+ K LQI ER +G + + +C ++S Sbjct: 4 LIAKSAIDRRLAEIVAPVIEDMGFELVRIRLMGGKTATLQIMAERPEGGIEIDECGDIST 63 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S +LDVE+ I Y LEV SPGIDRP+ R DF + G+ + +++ G Sbjct: 64 AVSAVLDVEDPILDSYVLEVGSPGIDRPLTRLKDFETFEGYDAKIQTDELIDGRKRWQGV 123 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 + G L E+ GE I + FD L A+LI+TDEL+R L + Sbjct: 124 LAGVEGGEVLLNIEENGET----QTIGLQFDWLSDAKLILTDELMREMLRARKARG 175 >gi|126724628|ref|ZP_01740471.1| hypothetical protein RB2150_12371 [Rhodobacterales bacterium HTCC2150] gi|126705792|gb|EBA04882.1| hypothetical protein RB2150_12371 [Rhodobacterales bacterium HTCC2150] Length = 228 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 57/176 (32%), Positives = 95/176 (53%), Gaps = 8/176 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + +++++ PVIE++ V++ L+ K +LQI VE+ +G + + DC ++S Sbjct: 42 LIAKAAIDQRMANIVTPVIEDLGCELVRVRLMTGKENILQIMVEKPEGGIEVDDCAKVST 101 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S LDVE+ I Y LEVSSPGIDRP+ R DF W+G+ E +++ G+ Sbjct: 102 AVSATLDVEDPILDAYNLEVSSPGIDRPLTRLKDFDMWDGYEAKIETSELIDGRRRFKGQ 161 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 + GT + + E E I + F+ L A+L++TDEL+R L + Sbjct: 162 LAGTQDDEVLITIE--------EGTIGLKFEWLSDAKLVLTDELIRDVLRSRKDAG 209 >gi|126738453|ref|ZP_01754158.1| hypothetical protein RSK20926_08312 [Roseobacter sp. SK209-2-6] gi|126720252|gb|EBA16958.1| hypothetical protein RSK20926_08312 [Roseobacter sp. SK209-2-6] Length = 197 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 61/178 (34%), Positives = 97/178 (54%), Gaps = 4/178 (2%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ ++ PVIE++ F V+I L+ K LQI ++ +G + + DC E+S Sbjct: 5 LIAKAAIDRRLAEILIPVIEDLGFELVRIRLMSGKTTTLQIMADKPEGGIEVDDCAEISN 64 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S LDVE+ I Y LEVSSPGIDRP+ R DF + G+ E G +++ G+ Sbjct: 65 AVSATLDVEDPILDAYSLEVSSPGIDRPLTRMKDFDMFEGYEAKLETEELVGGRRRFKGE 124 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + GT E + E +GE + I + FD L A+L++TDEL++ L + L Sbjct: 125 LAGTEEDEVLINIEDQGET----VTIGLKFDWLTDAKLVLTDELIKEMLRQRKAAGTL 178 >gi|121601902|ref|YP_989500.1| hypothetical protein BARBAKC583_1251 [Bartonella bacilliformis KC583] gi|259585726|sp|A1UU47|RIMP_BARBK RecName: Full=Ribosome maturation factor rimP gi|120614079|gb|ABM44680.1| conserved hypothetical protein [Bartonella bacilliformis KC583] Length = 209 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 69/187 (36%), Positives = 111/187 (59%), Gaps = 4/187 (2%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 + +T + EPR+F + G+ + +++ P+++ + +R V++ LL L LQI ER Sbjct: 4 INATEIMDDIDEPRLFEEDGVEALVVALVAPLLKPLGYRLVRVKLLGLNGLTLQIMAERA 63 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 DG MT+ DCE +S+ ISP+LDV+N+IE Y LE+SSPGIDRP+VRKSDF W G+ E Sbjct: 64 DGTMTIEDCEIISKTISPLLDVQNVIERKYHLEISSPGIDRPLVRKSDFFHWQGYTAKIE 123 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 ++K G + ++ GF L + E + +SF ++ +A L++TD+L+R Sbjct: 124 TRTIVNGRRKFRGALENVTQDGFILNID----AAPEEETVYVSFSNITNAHLVLTDKLIR 179 Query: 181 ASLNNYG 187 +L Sbjct: 180 DALKKDK 186 >gi|84500728|ref|ZP_00998977.1| hypothetical protein OB2597_12236 [Oceanicola batsensis HTCC2597] gi|84391681|gb|EAQ04013.1| hypothetical protein OB2597_12236 [Oceanicola batsensis HTCC2597] Length = 189 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 55/178 (30%), Positives = 88/178 (49%), Gaps = 8/178 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ ++ PVIE+M F V++ L+ + LQI ER G + + +C E+S Sbjct: 3 LIAKTAIDRRLAEIVTPVIEDMGFELVRLRLMGGQTKTLQIMAERPGGGIEVDECAEISN 62 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S LDVE+ + Y LEVSSPGIDRP+ R DF + G+ E +++ G Sbjct: 63 AVSATLDVEDPVSDAYTLEVSSPGIDRPLTRLKDFDTFQGYEAKIETTELIDGRKRFKGV 122 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + G + E E + + FD L A+L++TDEL++ L L Sbjct: 123 LAGVEGGEILINIE--------EGTVGLHFDWLADAKLVLTDELIKEMLKARKDAGQL 172 >gi|163745073|ref|ZP_02152433.1| hypothetical protein OIHEL45_05780 [Oceanibulbus indolifex HEL-45] gi|161381891|gb|EDQ06300.1| hypothetical protein OIHEL45_05780 [Oceanibulbus indolifex HEL-45] Length = 192 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 56/178 (31%), Positives = 94/178 (52%), Gaps = 8/178 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ +I PVIE+M F V++ L+ K+ +LQ+ +R DG + + +C ++SQ Sbjct: 5 LIAKAAIDRRLAEIITPVIEDMGFELVRVRLMSGKSTILQVMADRPDGGIEVDECAKISQ 64 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 AI +LDVE+ I Y LEVSSPGIDRP+ R DF + G+ E +++ G+ Sbjct: 65 AIGAVLDVEDPILDEYALEVSSPGIDRPLTRLKDFDAFEGYEAKIETTELIDGRRRFKGE 124 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + G + E E I + FD L A+L++TD+L++ L + + Sbjct: 125 LAGVEGGEVLINVE--------EGTIGLQFDWLSDAKLLLTDDLIKEMLRQRKASGAI 174 >gi|258543557|ref|YP_003188990.1| hypothetical protein APA01_25050 [Acetobacter pasteurianus IFO 3283-01] gi|256634635|dbj|BAI00611.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01] gi|256637691|dbj|BAI03660.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-03] gi|256640745|dbj|BAI06707.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-07] gi|256643800|dbj|BAI09755.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-22] gi|256646855|dbj|BAI12803.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-26] gi|256649908|dbj|BAI15849.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-32] gi|256652898|dbj|BAI18832.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655952|dbj|BAI21879.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-12] Length = 201 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 57/178 (32%), Positives = 100/178 (56%), Gaps = 8/178 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-MTLRDCEELS 73 + GL ++++I P +E+M + V++++L + +QI +R DG+ + + DCE +S Sbjct: 14 LSTHSGLEARVAALIAPAVEDMGYEIVRVAVLGRERPTVQIMADRKDGSLINVEDCERIS 73 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 A+ +LDVE+ I G + LEVSS GIDRP+ R D+ R+ GH V E++L +++ G Sbjct: 74 HAVGAVLDVEDPIPGAWTLEVSSAGIDRPLTRAKDWNRFAGHQVKAEVLLPVNGRRRFSG 133 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAG 191 ++G+ T + + ++A+ + L ARL++TD L+ AS S G Sbjct: 134 TVLGSDGTVARMRLDD-------GTEVALPLEELRRARLVLTDALIEASARMVQSAPG 184 >gi|254471146|ref|ZP_05084549.1| conserved hypothetical protein [Pseudovibrio sp. JE062] gi|211960288|gb|EEA95485.1| conserved hypothetical protein [Pseudovibrio sp. JE062] Length = 196 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 67/171 (39%), Positives = 99/171 (57%), Gaps = 2/171 (1%) Query: 9 SKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRD 68 + +PRI + GL ++ +++PVI ++ +R V+I + LQI ER DG M + D Sbjct: 2 DETDPRIVKEKGLEARVAEIVEPVIVDLGYRLVRIRVNGNNGCTLQIMAERPDGTMAVED 61 Query: 69 CEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 CEE+S A+SP LDV++ I G Y LE+SSPGIDRP+VR DF RW GHVV E+ + + Sbjct: 62 CEEISHAVSPALDVDDPISGAYHLEISSPGIDRPLVRAGDFERWVGHVVKIEMSVPQAGR 121 Query: 129 QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELL 179 ++ G I+G E + E + D + SA L++TDEL+ Sbjct: 122 KRYRGHIIGVEEGNAVIRMTDVQEGQDEAA--HLPLDEIGSAVLVLTDELI 170 >gi|319405102|emb|CBI78706.1| conserved hypothetical protein [Bartonella sp. AR 15-3] Length = 207 Score = 162 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 82/190 (43%), Positives = 117/190 (61%), Gaps = 2/190 (1%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 M + + EPR+F + G+A +S++I P+++ + F + LL L LQI VER Sbjct: 18 MNAIERMDDINEPRLFEEDGVAARVSALIIPLLKPLGFHLICTKLLSLNGLTLQIMVERT 77 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 +G MT++DCE +S+ ++P+LD+ENIIE Y LEVSSPGIDRP+VRKSDF W GH+ E Sbjct: 78 NGTMTIKDCEIVSRTVAPLLDIENIIERKYHLEVSSPGIDRPLVRKSDFFHWQGHLAKIE 137 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 +QK GK+ +++GF L EK D E I I F ++ +ARLI+TDEL+R Sbjct: 138 TSTIIDGRQKFRGKLTDITQSGFTLNIEKTA--DREEANIFIPFSNITNARLILTDELIR 195 Query: 181 ASLNNYGSYA 190 +L A Sbjct: 196 DTLKKNKDCA 205 >gi|307942743|ref|ZP_07658088.1| conserved hypothetical protein [Roseibium sp. TrichSKD4] gi|307773539|gb|EFO32755.1| conserved hypothetical protein [Roseibium sp. TrichSKD4] Length = 200 Score = 162 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 63/171 (36%), Positives = 107/171 (62%), Gaps = 2/171 (1%) Query: 9 SKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRD 68 S++E RI + GL ++++++PVIE++ FR V+ + LQI ER DG MT+ D Sbjct: 2 SEHEARIVTEQGLDARVAAIVEPVIEDLGFRLVRSKISAANGCTLQIMAERPDGTMTVED 61 Query: 69 CEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 CE +S+A+SP LDV++ I Y LEVSSPGIDRP+VR+SDF+RW+GH V E+ + + Sbjct: 62 CETVSRAVSPALDVDDPISRAYHLEVSSPGIDRPLVRESDFVRWSGHEVKIEMSVLQEGR 121 Query: 129 QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELL 179 ++ G ++G ++ +++ +++ + A+L++TD+L+ Sbjct: 122 KRFRGTLLGAENGETQIKLPDTKSGEVDA--VSLPIGDIGEAKLVLTDDLI 170 >gi|254462851|ref|ZP_05076267.1| hypothetical protein RB2083_3442 [Rhodobacterales bacterium HTCC2083] gi|206679440|gb|EDZ43927.1| hypothetical protein RB2083_3442 [Rhodobacteraceae bacterium HTCC2083] Length = 193 Score = 162 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 56/176 (31%), Positives = 87/176 (49%), Gaps = 8/176 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ +I PVIE++ F V++ L+ K LQI ER G + + C E+S Sbjct: 5 LIAKAAIDQRLAGIITPVIEDLGFELVRVRLMSGKTTTLQIMAERPTGGIEVDQCAEIST 64 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 AI LDVE+ I Y LEVSSPGIDRP+ R DF + G+ E +++ G+ Sbjct: 65 AIGATLDVEDPIIDEYTLEVSSPGIDRPLTRLKDFATFEGYEAKIETTELIDGRRRFKGQ 124 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 + G + E E + ++FD L A+L++TDEL+ L + Sbjct: 125 LAGVEGNDVLINIE--------EGTVGLNFDWLSDAKLVLTDELITEMLRQRKAAG 172 >gi|319898340|ref|YP_004158433.1| hypothetical protein BARCL_0162 [Bartonella clarridgeiae 73] gi|319402304|emb|CBI75843.1| conserved protein of unknown function [Bartonella clarridgeiae 73] Length = 207 Score = 161 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 75/177 (42%), Positives = 114/177 (64%), Gaps = 2/177 (1%) Query: 9 SKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRD 68 EPR+F + G+A ++++I P+++ + FR V+I LL L LQI ER +G MT+ D Sbjct: 29 DIDEPRLFEEDGIAARVAALIAPLLKPLGFRLVRIKLLGLNGLTLQIMAERANGTMTIED 88 Query: 69 CEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 CE +S+ ++P+LD+ENIIE Y LE+SSPGIDRP+VRKSDF W GH+ E + + Sbjct: 89 CETVSRTVAPLLDIENIIERKYHLEISSPGIDRPLVRKSDFFHWQGHLAKIETSTAINGR 148 Query: 129 QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 QK GK++ ++ GF L +K + + ISF ++ +A L++TDEL+R +L Sbjct: 149 QKFRGKLINVAQNGFTLNIDKTADGEEMHE--FISFSNITNAHLVLTDELIRDTLKK 203 >gi|319406548|emb|CBI80190.1| conserved hypothetical protein [Bartonella sp. 1-1C] Length = 225 Score = 161 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 83/190 (43%), Positives = 119/190 (62%), Gaps = 2/190 (1%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 M + EPR+F + G+A +S++I P+++ + FR V+ LL L LQI VER Sbjct: 18 MNEIERMDDIDEPRLFEEDGVAARVSALIIPLLKPLGFRLVRTKLLGLNGLTLQIMVERT 77 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 +G MT+ DCE +S+A++P+LDVENIIE Y LEVSSPGIDRP+VRKSDF+ W GH+ E Sbjct: 78 NGTMTIEDCEIVSRAVAPLLDVENIIERKYHLEVSSPGIDRPLVRKSDFIHWQGHLAKIE 137 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 +QKL GK+ ++ GF L EK + ++ + ISF ++ +A LI+TDEL+R Sbjct: 138 TSTIIDGRQKLRGKLKDITQNGFTLNIEKTAHR--EKVNVFISFSNITNAHLILTDELIR 195 Query: 181 ASLNNYGSYA 190 +L Sbjct: 196 DTLKKNKDLD 205 >gi|304392763|ref|ZP_07374703.1| conserved hypothetical protein [Ahrensia sp. R2A130] gi|303295393|gb|EFL89753.1| conserved hypothetical protein [Ahrensia sp. R2A130] Length = 213 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 63/181 (34%), Positives = 107/181 (59%), Gaps = 2/181 (1%) Query: 8 HSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLR 67 + + + R+ + GL ++SVI PVIE++ +R V++ +++ L +QIF ER DG M++ Sbjct: 20 NDRADARLVKEEGLDAKVASVIAPVIEDLGYRLVRVRMVDHNGLTMQIFAERPDGTMSVG 79 Query: 68 DCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD 127 +CE +S+A+SP+LDVE+ + Y LEV SPGIDRP+VR+SDF W GH E Sbjct: 80 ECEIISKALSPVLDVEDPVTQAYNLEVGSPGIDRPLVRRSDFETWTGHTAKIETAYLVDG 139 Query: 128 KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYG 187 +++ GK++ L ++ + + + ++ SA L++TD+L+R +L Sbjct: 140 RKRFRGKLVAVDGEIVKLRRDNAASGEDKDADV--PLHAIASASLVLTDDLIREALKRDK 197 Query: 188 S 188 S Sbjct: 198 S 198 >gi|254707322|ref|ZP_05169150.1| hypothetical protein BpinM_10195 [Brucella pinnipedialis M163/99/10] gi|261314804|ref|ZP_05954001.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261303830|gb|EEY07327.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] Length = 192 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 65/166 (39%), Positives = 98/166 (59%), Gaps = 2/166 (1%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 ++++PVI + FR V++ L LQI ER DG MT+ DCE +S+ ++P+LDV Sbjct: 2 RKWQALLEPVINTLGFRLVRVRLSGLNGQTLQIMAERPDGTMTVDDCELVSRTVAPVLDV 61 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ I G Y LE+SSPGIDRP+VRKSDF W GH+ E + ++K G+I+ Sbjct: 62 EDPISGKYHLEISSPGIDRPLVRKSDFSDWAGHIAKVETSIVHEGRKKFRGRIVVGEADS 121 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGS 188 +E ++ NE + I FD + ARL++TD+L+R +L + Sbjct: 122 VTIESDQISY--GNEPVVRIPFDLISDARLVLTDDLIRDALRKDKA 165 >gi|330991198|ref|ZP_08315150.1| Ribosome maturation factor rimP [Gluconacetobacter sp. SXCC-1] gi|329761691|gb|EGG78183.1| Ribosome maturation factor rimP [Gluconacetobacter sp. SXCC-1] Length = 227 Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 56/190 (29%), Positives = 101/190 (53%), Gaps = 11/190 (5%) Query: 2 ESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDD 61 + F P + GL I++++ P + +M F V++++L ++ +QI +R D Sbjct: 6 RAAFFALDADLPFL---TGLDARIAAMVAPALADMGFDLVRVAVLGRESPTVQIMADRAD 62 Query: 62 GN-MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 G + + DCE++S A+ ILDVE+ + G + LEVSS GIDRP+ R D+ R+ GH+ E Sbjct: 63 GTLIAIEDCEQISHAVGAILDVEDPLPGAWTLEVSSAGIDRPLTRAKDWERFAGHLARAE 122 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 + + +++ G ++G + + + ++A+ F + ARL++TDEL+ Sbjct: 123 MNMPIEGRKRFAGIVLGARDGHGLMRLDD-------GTEVALPFAEMRKARLVLTDELIE 175 Query: 181 ASLNNYGSYA 190 AS A Sbjct: 176 ASARMMRPAA 185 >gi|83950735|ref|ZP_00959468.1| hypothetical protein ISM_06535 [Roseovarius nubinhibens ISM] gi|83838634|gb|EAP77930.1| hypothetical protein ISM_06535 [Roseovarius nubinhibens ISM] Length = 190 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 55/178 (30%), Positives = 88/178 (49%), Gaps = 8/178 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ ++ PVIE++ F V++ L+ K LQI ER +G + + +C +S Sbjct: 5 LIAKAAIDRRLAEIVTPVIEDLGFELVRLRLMGGKTDTLQIMAERPEGGIEVDECARIST 64 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 +S +LDVE+ I Y LEVSSPGIDRP+ R DF + G+ E +++ G Sbjct: 65 EVSAVLDVEDPIIEAYTLEVSSPGIDRPLTRLKDFETFEGYEAKIETSELIDGRKRFKGV 124 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + G + E E I + FD L A+L++TDEL++ L L Sbjct: 125 LAGVEGEEVLINVE--------EGTIGLQFDWLADAKLVLTDELIKEMLRQRKDAGVL 174 >gi|84684620|ref|ZP_01012521.1| hypothetical protein 1099457000260_RB2654_13384 [Maritimibacter alkaliphilus HTCC2654] gi|84667599|gb|EAQ14068.1| hypothetical protein RB2654_13384 [Rhodobacterales bacterium HTCC2654] Length = 194 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 55/176 (31%), Positives = 92/176 (52%), Gaps = 4/176 (2%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ +++PVIE+M + V++ L LQI ++ +G + + D ++ Sbjct: 4 LVARTAIDRRLADIVRPVIEDMGYELVRLRLQGGNTQTLQIMADKPEGGIEVDDLSAINT 63 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+ LDVE+ IEG Y LEVSSPGIDRP+ R DF W+G + E +++ G Sbjct: 64 ALGATLDVEDPIEGEYNLEVSSPGIDRPLTRYKDFDTWDGWIAKVETSELIEGRKRFKGT 123 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 + GT + +E E +G + I ++FD L A+L++TDEL+ L Sbjct: 124 LQGTEDGEILIEIEDKG----EPVTIGLTFDLLADAKLVLTDELIAEMLKQRKDAG 175 >gi|75674220|ref|YP_316641.1| hypothetical protein Nwi_0021 [Nitrobacter winogradskyi Nb-255] gi|91207993|sp|Q3SWQ2|RIMP_NITWN RecName: Full=Ribosome maturation factor rimP gi|74419090|gb|ABA03289.1| Protein of unknown function DUF150 [Nitrobacter winogradskyi Nb-255] Length = 260 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 62/180 (34%), Positives = 110/180 (61%), Gaps = 1/180 (0%) Query: 11 YEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCE 70 EPR+ + G+A ++++ PV++ M +R V+I + E +QI ER DG++ + DCE Sbjct: 15 DEPRLVVEPGVAARVAAIAAPVLQGMGYRLVRIKVSGEAGCTVQIMAERPDGSIQIEDCE 74 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 +S+A+SP+LDV + I+ YRLE+SSPGIDRP+VR+SDF R+ GH+ E+ ++ +++ Sbjct: 75 AISKALSPVLDVADPIDKAYRLEISSPGIDRPLVRRSDFERYAGHLAKIEMAVAHQGRKR 134 Query: 131 LIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 G + G + L ++ + +E ++ + + + ARL++TDEL+ S+ Sbjct: 135 FRGVLQGVEDNAVRLHRDD-IRNNDDESEVMLVMEDIADARLVLTDELIAESMRRGKIAE 193 >gi|300024994|ref|YP_003757605.1| hypothetical protein Hden_3493 [Hyphomicrobium denitrificans ATCC 51888] gi|299526815|gb|ADJ25284.1| protein of unknown function DUF150 [Hyphomicrobium denitrificans ATCC 51888] Length = 213 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 61/183 (33%), Positives = 107/183 (58%), Gaps = 6/183 (3%) Query: 9 SKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK---NLLLQIFVERDDGNMT 65 R + G+A +++++++PV+E++ FR V++ + + ++Q+ ER DG++T Sbjct: 15 GPDTRRFLRETGVAAEVAAIVEPVLEDLGFRLVRVKVQGGGATADKIVQLMAERPDGSIT 74 Query: 66 LRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS 125 + DCE +S+ +SP+LDV + + G YRLEVSSPGIDRP+VR SDF W+GH E+ + Sbjct: 75 VDDCETISKQVSPVLDVADPVSGAYRLEVSSPGIDRPLVRPSDFEDWSGHEAKIELTEAV 134 Query: 126 GDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 G ++K G + G + +E + + + + + ARL++TDEL+R +L Sbjct: 135 GGRRKFKGMLEGFEDGEVRIEAD---TGEHGIQHLGLPVHLISDARLVLTDELIREALAR 191 Query: 186 YGS 188 Sbjct: 192 AKK 194 >gi|126728007|ref|ZP_01743823.1| hypothetical protein SSE37_18492 [Sagittula stellata E-37] gi|126710972|gb|EBA10022.1| hypothetical protein SSE37_18492 [Sagittula stellata E-37] Length = 189 Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 59/176 (33%), Positives = 92/176 (52%), Gaps = 8/176 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + G+ ++ ++ PVIE+M F V++ L LLQI ER +G + + +C E+S Sbjct: 4 MIAKTGMDLRLAEIVAPVIEDMGFELVRLRLQSGNTPLLQIMAERPEGGIEVDECAEIST 63 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S +LDVE+ I Y LEVSSPGIDRP+ R DF + G+ E +++ G Sbjct: 64 AVSAVLDVEDPIVEAYTLEVSSPGIDRPLTRLKDFDTYEGYEARLETTDLIEGRKRFRGI 123 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 + G + + + E I + FD L A+L++TDEL+R L + A Sbjct: 124 LAGVEGSEVLINVD--------EGTIGLQFDWLADAKLVMTDELVREMLKARKTAA 171 >gi|209544213|ref|YP_002276442.1| hypothetical protein Gdia_2067 [Gluconacetobacter diazotrophicus PAl 5] gi|259585817|sp|A9HF10|RIMP_GLUDA RecName: Full=Ribosome maturation factor rimP gi|209531890|gb|ACI51827.1| protein of unknown function DUF150 [Gluconacetobacter diazotrophicus PAl 5] Length = 207 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 54/174 (31%), Positives = 99/174 (56%), Gaps = 8/174 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-MTLRDCEELSQAIS 77 GL +++++ PV+ +M F V++++L ++ +QI +R DG + + DCE++S A+ Sbjct: 9 TGLDAKVAAIVAPVLADMGFELVRVAILGRESPTVQIMADRADGTLIAIEDCEQISHAVG 68 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ + G + LEVSS GIDRP+ R D+ R+ GH+ E+ + +++ G ++G Sbjct: 69 AVLDVEDPLPGAWTLEVSSAGIDRPLTRAKDWTRFAGHLAKAEVNIPIDGRKRFSGILLG 128 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAG 191 + L E ++A+ + ARL++TDEL+ AS + + G Sbjct: 129 AEDGFGRLRLED-------GTEVALPLSDMRRARLVLTDELIAASAHMMRAPGG 175 >gi|83942069|ref|ZP_00954531.1| hypothetical protein EE36_07533 [Sulfitobacter sp. EE-36] gi|83953119|ref|ZP_00961841.1| hypothetical protein NAS141_12461 [Sulfitobacter sp. NAS-14.1] gi|83842087|gb|EAP81255.1| hypothetical protein NAS141_12461 [Sulfitobacter sp. NAS-14.1] gi|83847889|gb|EAP85764.1| hypothetical protein EE36_07533 [Sulfitobacter sp. EE-36] Length = 192 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 54/178 (30%), Positives = 93/178 (52%), Gaps = 8/178 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ +I PVIE+M F V++ L+ K+ LQ+ +R DG + + + +SQ Sbjct: 5 LIAKAAIDRRMAEIITPVIEDMGFELVRVRLMSGKSTTLQVMADRPDGGIEVDELALISQ 64 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 +IS ++DVE+ I Y LEVSSPGIDRP+ R DF + G+ E +++ G+ Sbjct: 65 SISAVMDVEDPILDEYTLEVSSPGIDRPLTRLKDFEMFEGYEAKIETGELIDGRRRFKGE 124 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAGL 192 + G + + E E I + FD L A+L++TD+L++ L + + Sbjct: 125 LAGVEDDEVLINVE--------EGTIGLKFDWLTDAKLVLTDDLIKEMLRQRKASGAI 174 >gi|260576185|ref|ZP_05844178.1| protein of unknown function DUF150 [Rhodobacter sp. SW2] gi|259021665|gb|EEW24968.1| protein of unknown function DUF150 [Rhodobacter sp. SW2] Length = 199 Score = 157 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 59/176 (33%), Positives = 90/176 (51%), Gaps = 8/176 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ ++ P IE + F V+I L+ K LQI ER DG + + +C +S Sbjct: 4 LIAKTAIDRRLAEIVTPAIEGLGFELVRIRLMGGKVRTLQIMAERPDGGIVVDECAAIST 63 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S ILDVE+ +E +Y LEVSSPGIDRP+ R DF W G+ E +++ G+ Sbjct: 64 AVSAILDVEDPVEENYILEVSSPGIDRPLTRLKDFDTWQGYEARIETTELIDGRRRFKGE 123 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 + G +E E E I + FD L A+L++TDEL+ L + Sbjct: 124 LRGIQGDEVLIEIE--------EGIIGLQFDWLSDAKLVLTDELIAEMLRQRKASG 171 >gi|312115895|ref|YP_004013491.1| hypothetical protein Rvan_3197 [Rhodomicrobium vannielii ATCC 17100] gi|311221024|gb|ADP72392.1| protein of unknown function DUF150 [Rhodomicrobium vannielii ATCC 17100] Length = 221 Score = 157 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 59/177 (33%), Positives = 99/177 (55%), Gaps = 2/177 (1%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELS 73 R + G A D++++I+PV+E+M FR V++++ + +QI ++ DG + + DC ++S Sbjct: 21 RFTREFGAAADLAALIEPVLEDMGFRLVRVTMSKRDGATIQIMADKADGAINVDDCAQIS 80 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 + ISP+LD + I+ Y LEVSSPGIDR +VR SDF W G E+ +++ G Sbjct: 81 RRISPLLDAHDPIKDRYYLEVSSPGIDRILVRPSDFEDWAGFETKVELKELIDGRKRFRG 140 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 + G L+ + + I + D + A+L++TDEL+RASL + Sbjct: 141 ILEGYENGEMLLQVQLD--EKGEPQTIGLPVDLIHDAKLVLTDELIRASLAKAKAAG 195 >gi|260461983|ref|ZP_05810228.1| protein of unknown function DUF150 [Mesorhizobium opportunistum WSM2075] gi|259032230|gb|EEW33496.1| protein of unknown function DUF150 [Mesorhizobium opportunistum WSM2075] Length = 215 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 115/179 (64%), Gaps = 2/179 (1%) Query: 7 LHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTL 66 + S+ + RI + G+ I+ +IQPV+ + FR V++ L + L LQI ER+DG MT+ Sbjct: 4 MTSEGDDRIIRESGIDARIALIIQPVLRGIGFRLVRVHLSGQNGLTLQIMAEREDGTMTV 63 Query: 67 RDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 DCEE+S+A+SP LDV++ IE Y LEVSSPGIDRP+VRKSDF+ W GH+V E + Sbjct: 64 EDCEEVSRAVSPALDVDDPIEKAYHLEVSSPGIDRPLVRKSDFVTWTGHLVKMETSVVVA 123 Query: 127 DKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 D+++ GKI E +E++K E + + +D++ RLI+TD+L+R +L+ Sbjct: 124 DRKRFKGKIAEAGENDVLIERDKAAY--GEEPTVRVPYDAISETRLILTDDLIRDALSK 180 >gi|146337224|ref|YP_001202272.1| hypothetical protein BRADO0050 [Bradyrhizobium sp. ORS278] gi|259585732|sp|A4YJE6|RIMP_BRASO RecName: Full=Ribosome maturation factor rimP gi|146190030|emb|CAL74022.1| conserved hypothetical protein; putative YhbC-like protein [Bradyrhizobium sp. ORS278] Length = 233 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 58/174 (33%), Positives = 104/174 (59%), Gaps = 2/174 (1%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAI 76 + G+A +++V PV++ M +R V+I + E +Q+ ER DG M + DCE +S+A+ Sbjct: 1 MEPGVAARVAAVADPVLQGMGYRLVRIRISGESGCTVQVMAERPDGTMQIEDCEAVSRAL 60 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 SP+LD+ + I+ YRLE+SSPGIDRP+VR+SDF R GH+V E+ ++ ++++ G I Sbjct: 61 SPVLDIADPIDRAYRLEISSPGIDRPLVRRSDFERHVGHLVKIEMAVAYQNRKRFRGIIK 120 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 G G + ++ + + + + + A++++TDEL+ S+ + Sbjct: 121 GVEGDGVRITRDDVAKDA--DPDVVLPMADIGDAKMVLTDELIAESMRRGKAAE 172 >gi|254450327|ref|ZP_05063764.1| hypothetical protein OA238_928 [Octadecabacter antarcticus 238] gi|198264733|gb|EDY89003.1| hypothetical protein OA238_928 [Octadecabacter antarcticus 238] Length = 209 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 56/176 (31%), Positives = 96/176 (54%), Gaps = 4/176 (2%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + I+ +I P +E++ F V++ L+ K +LQI +R DG + + DC E+S Sbjct: 16 LIARAAMDRRITEIITPTVEDLGFEVVRVRLMTGKESILQIMAQRPDGTIEVDDCGEIST 75 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S +LDVE+ I+ + LEVSSPGIDRP+ R DF++W+G+ E +++ G Sbjct: 76 AVSALLDVEDPIKDVFTLEVSSPGIDRPLTRFKDFVQWDGNEAKIETEELIDGRRRFKGM 135 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 + G +E E +G + I + F+ L A+L++T++L+R L Sbjct: 136 LRGVEGDEVLIEIEDKG----EPVTIGLKFEWLTDAKLVLTEDLIRGVLRGRKDAG 187 >gi|319403632|emb|CBI77217.1| conserved hypothetical protein [Bartonella rochalimae ATCC BAA-1498] Length = 225 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 81/190 (42%), Positives = 118/190 (62%), Gaps = 2/190 (1%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 M + EPR+F + G+A +S++I P+++ + FR V+ LL L LQI VER Sbjct: 18 MNEIERMGDIDEPRLFEEDGVAARVSALIIPLLKPLGFRLVRTKLLGLNGLTLQIMVERT 77 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 +G MT+ DCE +S+A++P+LD+EN+IE Y LE+SSPGIDR +VRKSDF+ W GH+ E Sbjct: 78 NGTMTIEDCEIVSRAVAPLLDIENVIERKYHLEISSPGIDRLLVRKSDFVHWQGHLAKIE 137 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 +QKL GK+ ++ GF L EK + E+ I ISF ++ +A LI+TDEL+R Sbjct: 138 TNTVIDGRQKLRGKLKDITQNGFTLNIEKTAHR--EEINIFISFSNITNAHLILTDELIR 195 Query: 181 ASLNNYGSYA 190 +L Sbjct: 196 DTLKKNKDLD 205 >gi|255264773|ref|ZP_05344115.1| hypothetical protein TR2A62_2551 [Thalassiobium sp. R2A62] gi|255107108|gb|EET49782.1| hypothetical protein TR2A62_2551 [Thalassiobium sp. R2A62] Length = 190 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 60/176 (34%), Positives = 93/176 (52%), Gaps = 8/176 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + I+ +IQP++E M + V+I L+ K LQI ++ DG + + DC E+S Sbjct: 4 LVAKAAIDRRIAEIIQPMMESMGYELVRIRLMSGKATTLQIMAQKPDGTIEVDDCAEIST 63 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S +LDVE+ I Y LEVSSPGIDRP+ R DF +W G+ E +++ G+ Sbjct: 64 AVSALLDVEDPILDAYELEVSSPGIDRPLTRVKDFAQWEGYEAKIETDELIDGRRRFKGQ 123 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 + GT +E E E I + F+ L A+L++TD+L+R L Sbjct: 124 LAGTEGDEILIEIE--------EGTIGLKFEWLSDAKLVLTDDLIRDVLRGRKDAG 171 >gi|296114400|ref|ZP_06833054.1| hypothetical protein GXY_01428 [Gluconacetobacter hansenii ATCC 23769] gi|295979161|gb|EFG85885.1| hypothetical protein GXY_01428 [Gluconacetobacter hansenii ATCC 23769] Length = 210 Score = 155 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 52/181 (28%), Positives = 97/181 (53%), Gaps = 8/181 (4%) Query: 11 YEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDD-GNMTLRDC 69 + + GL I+ +I P + +M F V+++++ ++ +QI +R D +T+ DC Sbjct: 1 MDADLPSLTGLDARIADMIGPALVDMGFELVRVAVMGRESPTVQIMADRADGSQITINDC 60 Query: 70 EELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ 129 E++S A+ ILDVE+ + G + LEVSS GIDRP+ R D+ R+ GH+ E+ + ++ Sbjct: 61 EQISHAVGAILDVEDPLSGEWTLEVSSAGIDRPLTRPKDWDRYAGHLAKAEMNMPVDGRK 120 Query: 130 KLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSY 189 + G ++G + + + ++A+ F+ + ARL++TD L+ AS Sbjct: 121 RFSGIVLGARDGHGLMRLDD-------GAEVALPFEEMRKARLVLTDALIEASARMAHPG 173 Query: 190 A 190 Sbjct: 174 E 174 >gi|13474626|ref|NP_106195.1| hypothetical protein mlr5550 [Mesorhizobium loti MAFF303099] gi|34223133|sp|Q98BJ1|RIMP_RHILO RecName: Full=Ribosome maturation factor rimP gi|14025380|dbj|BAB51981.1| mlr5550 [Mesorhizobium loti MAFF303099] Length = 215 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 75/177 (42%), Positives = 114/177 (64%), Gaps = 2/177 (1%) Query: 9 SKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRD 68 S+ + RI + G+ I+ ++QPV+ + FR V++ L + L LQI ER+DG MT+ D Sbjct: 6 SEGDDRIIRESGIDARIALIVQPVLRGIGFRLVRVHLSGQNGLTLQIMAEREDGTMTVED 65 Query: 69 CEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 CEE+S+A+SP LDV++ IE Y LEVSSPGIDRP+VRKSDF+ W GH+V E + D+ Sbjct: 66 CEEVSRAVSPALDVDDPIEKAYHLEVSSPGIDRPLVRKSDFVTWTGHLVKMETSVIVADR 125 Query: 129 QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 ++ GKI E +E++K E + + +D++ RLI+TD+L+R +L+ Sbjct: 126 KRFKGKIAEAGENDVLIERDKAAY--GEEPTVRVPYDAIAETRLILTDDLIRDALSK 180 >gi|114769757|ref|ZP_01447367.1| hypothetical protein OM2255_09321 [alpha proteobacterium HTCC2255] gi|114549462|gb|EAU52344.1| hypothetical protein OM2255_09321 [alpha proteobacterium HTCC2255] Length = 183 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 58/172 (33%), Positives = 92/172 (53%), Gaps = 8/172 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++S++QPVIE++ + V+I L+ K LQI ++ +G + + DC ++S Sbjct: 4 LIAKSAIDKRMASIVQPVIEDLGYELVRIRLMSGKATTLQIMADKPNGGIDVNDCSKIST 63 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 IS ILDVE+ IE Y LEVSSPG+DRP+ R DF WNG + E +++ G Sbjct: 64 EISAILDVEDPIEAEYALEVSSPGMDRPLTRLKDFQTWNGFEIKVETSELIDGQRRFKGL 123 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNY 186 G + +E + I + F+ L A+L++TDEL+ AS Sbjct: 124 SRGIEDNDVLIEIPQ--------GTIGLDFEWLSDAKLVLTDELVAASQKGR 167 >gi|84514879|ref|ZP_01002242.1| hypothetical protein SKA53_11683 [Loktanella vestfoldensis SKA53] gi|84511038|gb|EAQ07492.1| hypothetical protein SKA53_11683 [Loktanella vestfoldensis SKA53] Length = 191 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 59/176 (33%), Positives = 90/176 (51%), Gaps = 8/176 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + I+ +I PVIE+M F V++ L+ K LQI V+R DG + + C ++S Sbjct: 4 LIAKAAVDRRIAEIITPVIEDMGFEVVRVRLMTGKESTLQIMVQRPDGTIEVDQCAQIST 63 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 AIS +LDVE+ I Y LEVSSPGIDRP+ R DF +W G E +++ G+ Sbjct: 64 AISAVLDVEDPIVDVYTLEVSSPGIDRPLTRLKDFDQWKGFEAKIETEELIDGRRRFKGE 123 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 + G ++ + E I + F L A+L++TD+L+R L Sbjct: 124 LAGIDGDEVLIDID--------EGTIGLKFAWLSDAKLVLTDDLIRDVLRGRKDAG 171 >gi|319779772|ref|YP_004139248.1| hypothetical protein Mesci_0023 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317165660|gb|ADV09198.1| protein of unknown function DUF150 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 214 Score = 154 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 75/177 (42%), Positives = 113/177 (63%), Gaps = 2/177 (1%) Query: 9 SKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRD 68 S+ + RI + G+ I+ ++QPV+ + FR V++ L + L LQI ER+DG MT+ D Sbjct: 6 SEGDDRIIRESGIDARIALIVQPVLRGIGFRLVRVHLSGQNGLTLQIMAEREDGTMTVED 65 Query: 69 CEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 CEE+S+A+SP LDV++ IE Y LEVSSPGIDRP+VRKSDF W GH+V E + D+ Sbjct: 66 CEEVSRAVSPALDVDDPIEKAYHLEVSSPGIDRPLVRKSDFTTWTGHLVKMETSIVVADR 125 Query: 129 QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 ++ GKI E +E++K E + + +D++ RLI+TD+L+R +L+ Sbjct: 126 KRFKGKIAEAGEDDVLIERDKAAY--GEEPTVRVPYDAIADVRLILTDDLIRDALSK 180 >gi|115522228|ref|YP_779139.1| hypothetical protein RPE_0199 [Rhodopseudomonas palustris BisA53] gi|122298064|sp|Q07V75|RIMP_RHOP5 RecName: Full=Ribosome maturation factor rimP gi|115516175|gb|ABJ04159.1| protein of unknown function DUF150 [Rhodopseudomonas palustris BisA53] Length = 272 Score = 154 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 65/179 (36%), Positives = 109/179 (60%), Gaps = 2/179 (1%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 EPR+ + G+A +++V PV+ M +R V+I + E +QI ER DG M + DCE Sbjct: 28 EPRLVVEPGVAARVAAVAGPVLHGMGYRLVRIKVSGELGCTVQIMAERPDGTMLIEDCEA 87 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+A+SP+LDV + I+ YRLEVSSPGIDRP+VR+SDF R+ G++V ++ + +++ Sbjct: 88 ISKALSPVLDVADPIDKAYRLEVSSPGIDRPLVRRSDFERYAGYLVKIDMAVPHQGRKRF 147 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 G + G L++E G + ++ + ++ + + ARL++TDEL+ S+ Sbjct: 148 RGILGGIEGDAVHLQRE--GVRGDDDPAVLLTIEDISDARLVLTDELIAESMRRGKIAE 204 >gi|315122011|ref|YP_004062500.1| hypothetical protein CKC_01305 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495413|gb|ADR52012.1| hypothetical protein CKC_01305 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 186 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 134/186 (72%), Positives = 159/186 (85%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 MESTH SKYEPRIFGD+GL D+S++IQPVIEEM FR VQ+SLLEE+NL+LQI VERD Sbjct: 1 MESTHVFCSKYEPRIFGDVGLGQDVSNIIQPVIEEMGFRIVQVSLLEERNLILQILVERD 60 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 +G MTL DCEE+S+AISPILDVENIIE HY+LE+SSPGI+RPMVRKSDF RWNGH+VACE Sbjct: 61 NGTMTLCDCEEVSKAISPILDVENIIEEHYQLEISSPGINRPMVRKSDFERWNGHIVACE 120 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 + SSGDK+KL+GKI+G S+ FFLEK++ KD QIA+SFDSLLSA+L++TDELL Sbjct: 121 VASSSGDKKKLVGKIVGKSDLDFFLEKKEEDLKDAGVSQIAVSFDSLLSAKLVITDELLC 180 Query: 181 ASLNNY 186 ASLN Sbjct: 181 ASLNRK 186 >gi|58040012|ref|YP_191976.1| hypothetical protein GOX1579 [Gluconobacter oxydans 621H] gi|81351770|sp|Q5FQM6|RIMP_GLUOX RecName: Full=Ribosome maturation factor rimP gi|58002426|gb|AAW61320.1| Hypothetical protein associated with nus operon [Gluconobacter oxydans 621H] Length = 203 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 50/165 (30%), Positives = 89/165 (53%), Gaps = 8/165 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-MTLRDCEELSQAIS 77 GL I+ I P + ++ + V++S+L +QI +R +G+ +++ DCE++S A Sbjct: 16 TGLEARIAERIAPTLADLGYELVRLSVLGRDTPTIQIMADRANGSLISVEDCEQISHAAG 75 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ILDV++ I G + LEVSS GIDRP+ R D+ R+ GH+ E+ + +++ G +MG Sbjct: 76 AILDVDDPIPGAWMLEVSSAGIDRPLTRAKDWERFAGHLAKAELDVPLNGRRRFSGTVMG 135 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS 182 + + + + + + ARL++TD L+ AS Sbjct: 136 ARDGNAIIRLDD-------GTEAVLPLVDIRKARLVLTDALIEAS 173 >gi|304320432|ref|YP_003854075.1| hypothetical protein PB2503_04292 [Parvularcula bermudensis HTCC2503] gi|303299334|gb|ADM08933.1| hypothetical protein PB2503_04292 [Parvularcula bermudensis HTCC2503] Length = 174 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 54/165 (32%), Positives = 83/165 (50%), Gaps = 6/165 (3%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 ++ ++ P+IE + +++ L K LQI ER DG MT DC LS+A+S +L+ Sbjct: 6 AALTDLLLPIIETEGYELIRLRLTGAKQQTLQIMAERPDGTMTAEDCARLSRAVSAVLEE 65 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 + I G Y LEVSSPGIDRP+ R D+ RW G V E+ +++ G + G Sbjct: 66 ADPISGEYVLEVSSPGIDRPLTRLKDYARWEGFVAKIELSQPVEGQKRYRGTLAGVENDD 125 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYG 187 ++ + E I F + +L++TDEL+ SL Sbjct: 126 VCIDLDG------EEETALIPFSIIAGGKLVMTDELIAESLRRAK 164 >gi|126734453|ref|ZP_01750200.1| hypothetical protein RCCS2_09839 [Roseobacter sp. CCS2] gi|126717319|gb|EBA14183.1| hypothetical protein RCCS2_09839 [Roseobacter sp. CCS2] Length = 192 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 59/176 (33%), Positives = 91/176 (51%), Gaps = 8/176 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + I+ +I PV+E+M F V++ L+ K +LQ+ V+R DG + + +C ++S Sbjct: 5 LIAKAAIDRRIAEIITPVVEDMGFEVVRVRLMTGKESILQVMVQRPDGQIEVDECGQVST 64 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S ILDVE+ I Y LEVSSPGIDRP+ R DF +W G E +++ G Sbjct: 65 ALSAILDVEDPILDVYTLEVSSPGIDRPLTRMKDFDQWEGFEAKIETDELIDGRRRFKGP 124 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 + GT + E I + F+ L A+L++TDEL+R L Sbjct: 125 LAGTEGDEVLITI--------AEGTIGLKFEWLSDAKLVLTDELIRDVLRGRKDAG 172 >gi|162147157|ref|YP_001601618.1| hypothetical protein GDI_1362 [Gluconacetobacter diazotrophicus PAl 5] gi|161785734|emb|CAP55305.1| conserved protein [Gluconacetobacter diazotrophicus PAl 5] Length = 193 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 52/168 (30%), Positives = 97/168 (57%), Gaps = 8/168 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-MTLRDCEELSQAISPILDVE 83 +++++ PV+ +M F V++++L ++ +QI +R DG + + DCE++S A+ +LDVE Sbjct: 1 MAAIVAPVLADMGFELVRVAILGRESPTVQIMADRADGTLIAIEDCEQISHAVGAVLDVE 60 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + + G + LEVSS GIDRP+ R D+ R+ GH+ E+ + +++ G ++G + Sbjct: 61 DPLPGAWTLEVSSAGIDRPLTRAKDWTRFAGHLAKAEVNIPIDGRKRFSGILLGAEDGFG 120 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAG 191 L E ++A+ + ARL++TDEL+ AS + + G Sbjct: 121 RLRLED-------GTEVALPLSDMRRARLVLTDELIAASAHMMRAPGG 161 >gi|310817129|ref|YP_003965093.1| Ribosome maturation factor rimP [Ketogulonicigenium vulgare Y25] gi|308755864|gb|ADO43793.1| Ribosome maturation factor rimP [Ketogulonicigenium vulgare Y25] Length = 218 Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 58/187 (31%), Positives = 94/187 (50%), Gaps = 15/187 (8%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ ++QPVIE+M F V+I ++ K LQI ++ DG + + DC +S Sbjct: 4 LIARAAIDRRVAEIVQPVIEDMGFELVRIRVMTGKETTLQIMAQKPDGTIEVDDCAAIST 63 Query: 75 -----------AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVL 123 A+S +LDVE+ I +Y LEVSSPGIDRP+ R DF W+G+ E Sbjct: 64 AVSAGLDPPPPAVSAVLDVEDPIVENYTLEVSSPGIDRPLTRLKDFDLWDGYTAKIETEE 123 Query: 124 SSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 +++ G++ GT +E + + I + F+ L A+L++TDEL+R L Sbjct: 124 LIDGRRRFKGELRGTEGDEILIELDDAA----EPVTIGLKFEWLSDAKLVLTDELIRDVL 179 Query: 184 NNYGSYA 190 Sbjct: 180 RGRKDAG 186 >gi|114571579|ref|YP_758259.1| hypothetical protein Mmar10_3040 [Maricaulis maris MCS10] gi|122314890|sp|Q0AK72|RIMP_MARMM RecName: Full=Ribosome maturation factor rimP gi|114342041|gb|ABI67321.1| protein of unknown function DUF150 [Maricaulis maris MCS10] Length = 178 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 51/178 (28%), Positives = 89/178 (50%), Gaps = 7/178 (3%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDD-GNMTLRDCEELS 73 + I ++ +PV E++ V++ ++ K LQI +R + + + DC S Sbjct: 1 MKTKSPQDDRILALAEPVAAELALEVVRVRIMSGKRPRLQIMADRTNGTGIEVEDCARFS 60 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 +A+S + +VE+ + G Y LEVSSPGIDRP+ F RW G+ V E+ + +++ G Sbjct: 61 RALSEVFEVEDPVAGEYDLEVSSPGIDRPLTTLPHFERWEGNEVKIELDRLAEGRKRFRG 120 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAG 191 + G + L+ + + I FD ++ A+L++TD L+ A L G A Sbjct: 121 ILAGVEDGHVGLDMDG------EDDTTMIPFDWIVEAKLVLTDALIEADLKARGRGAA 172 >gi|300718579|ref|YP_003743382.1| hypothetical protein [Erwinia billingiae Eb661] gi|299064415|emb|CAX61535.1| Conserved uncharacterized protein [Erwinia billingiae Eb661] Length = 195 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 73/159 (45%), Gaps = 9/159 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 L ++ +I +E + + V I + + L+I+++ + + + DC ++S Sbjct: 44 VALSTLEQKLTELITAPVEALGYELVGIEFVRGRTSTLRIYIDS-ENGINVDDCADVSHQ 102 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S + DVE+ I Y LEVSSPG++RP+ + + ++ G V+ + ++ +++K G I Sbjct: 103 VSAVFDVEDPITVAYNLEVSSPGLERPLFTAAHYAQFIGEEVSLVLRMAVQNRRKWQGII 162 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E E + ++ A L+ Sbjct: 163 KSVEGEMITVAVEGNDEV--------FALSNIQKANLVP 193 >gi|83595107|ref|YP_428859.1| hypothetical protein Rru_A3778 [Rhodospirillum rubrum ATCC 11170] gi|91208354|sp|Q2RMS3|RIMP_RHORT RecName: Full=Ribosome maturation factor rimP gi|83578021|gb|ABC24572.1| Protein of unknown function DUF150 [Rhodospirillum rubrum ATCC 11170] Length = 225 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 59/176 (33%), Positives = 100/176 (56%), Gaps = 3/176 (1%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDG-NMTLRDCEELSQAI 76 D + G + ++ P ++ M + V+++LL +N LQ+ ER DG MT+ DCE +S+A+ Sbjct: 35 DARMMGHLEKLLAPTLDAMGYEVVRVTLLGSQNPTLQVMAERLDGVAMTVSDCETISRAL 94 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 +LDVE+ I G Y LE+SSPGIDRP+ R D+ R+ GH E +++ G ++ Sbjct: 95 GALLDVEDPIAGRYSLEISSPGIDRPLTRPKDYARFAGHEARIETDRLIEGHRRMKGLLL 154 Query: 137 GTSET-GFFLE-KEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 G E L E + +D ++ I F +++ A+L++TD L+ +L + + A Sbjct: 155 GIDEDRTVRLRLIEGKAAEDGTLPEVEIPFGAIVKAKLLLTDALIAKALKDAEALA 210 >gi|83945004|ref|ZP_00957370.1| hypothetical protein OA2633_10254 [Oceanicaulis alexandrii HTCC2633] gi|83851786|gb|EAP89641.1| hypothetical protein OA2633_10254 [Oceanicaulis alexandrii HTCC2633] Length = 178 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 52/170 (30%), Positives = 84/170 (49%), Gaps = 6/170 (3%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 I + +P+ E + V++ ++ K +QI ER DG M + DC LS+A+S + D Sbjct: 8 DKRILEIAEPLAETLGLEIVRVRVMGGKKTTVQIMAERHDGTMVVEDCARLSRALSEVFD 67 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + + G Y LEVSSPGIDRP+ S F RW G E+ ++++ G + G + Sbjct: 68 EADPVSGEYDLEVSSPGIDRPLTALSHFERWEGFEAKIELDRLVENRKRFRGMLAGIEDD 127 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAG 191 ++ + I F+ + A+L++TD L+ ASL G G Sbjct: 128 NVLMDLAG------EDDTAVIPFEWIADAKLVMTDALVEASLKARGPIEG 171 >gi|288959697|ref|YP_003450038.1| hypothetical protein AZL_028560 [Azospirillum sp. B510] gi|288912005|dbj|BAI73494.1| hypothetical protein AZL_028560 [Azospirillum sp. B510] Length = 166 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 58/172 (33%), Positives = 94/172 (54%), Gaps = 9/172 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDG-NMTLRDCEELSQAIS 77 M G I +I P +E M + V++ + + +LQI ER DG MT+ DC ++S+++S Sbjct: 1 MDATGRIEQIITPSVEAMGYEVVRVQISGGQRAVLQIMAERADGAPMTVEDCADISRSVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I Y LEVSSPGIDRP+ R DF R+ G E ++ +++ G + G Sbjct: 61 ALLDVEDPIREAYTLEVSSPGIDRPLTRLKDFERFAGFEARLESRMAIDGRKRFKGMLKG 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSY 189 + ++ E+ + FD++L A+L++TD+L+RAS Sbjct: 121 VEDGLVCIDTEQGAA--------RLEFDNILRAKLVLTDDLIRASQEQQDGP 164 >gi|188532502|ref|YP_001906299.1| YhbC-like protein [Erwinia tasmaniensis Et1/99] gi|188027544|emb|CAO95391.1| YhbC-like protein [Erwinia tasmaniensis Et1/99] Length = 192 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 74/154 (48%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I +E + + V I + + L+I+++ +D + + DC ++S +S ++ Sbjct: 46 LEQKLTELISAPVEALGYELVGIEFVRGRTSTLRIYIDSED-GINVDDCADVSHQVSAVM 104 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+DRPM + R+ G V+ + ++ +++K G I Sbjct: 105 DVEDPITVAYNLEVSSPGLDRPMFTAEHYARFTGEEVSLVLRMAVQNRRKWQGIIKSVEG 164 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E E + ++ A L+ Sbjct: 165 EMITVAVEGNDEV--------FALSNIQKANLVP 190 >gi|254439640|ref|ZP_05053134.1| conserved hypothetical protein [Octadecabacter antarcticus 307] gi|198255086|gb|EDY79400.1| conserved hypothetical protein [Octadecabacter antarcticus 307] Length = 188 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 56/170 (32%), Positives = 95/170 (55%), Gaps = 4/170 (2%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + I+ +I P IE++ F V++ L+ K +LQI ++ DG + + DC E+S A+S +L Sbjct: 1 MDRRITEIITPTIEDLGFEVVRVRLMTGKESILQIMAQKPDGTIEVDDCGEISTAVSALL 60 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I+ + LEVSSPGIDRP+ R DF++W+G+ E +++ G + G Sbjct: 61 DVEDPIKDVFTLEVSSPGIDRPLTRLKDFVQWDGNEAKIETEELIDGRRRFKGMLRGVEG 120 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 +E E+ G + I + F+ L A+L++T++L+R L Sbjct: 121 DEVLIEIEENG----EPVTIGLKFEWLTDAKLVLTEDLIRGVLRGRKDAG 166 >gi|89067478|ref|ZP_01154991.1| hypothetical protein OG2516_11576 [Oceanicola granulosus HTCC2516] gi|89047047|gb|EAR53101.1| hypothetical protein OG2516_11576 [Oceanicola granulosus HTCC2516] Length = 197 Score = 148 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 61/176 (34%), Positives = 94/176 (53%), Gaps = 4/176 (2%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + I+ +I PVI +M F +V++ L +LQI ++ DG + + +C E+S Sbjct: 4 LIAKTAMDRRITEIIDPVITDMGFETVRVRLQGGNTPVLQIMAQKPDGTIEVDECAEIST 63 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S +LDVE+ I Y LEVSSPGIDRP+ R DF RW G+V E +++ G+ Sbjct: 64 AVSAVLDVEDPILDAYTLEVSSPGIDRPLTRLKDFDRWQGYVAKLETTELIDGRRRFKGE 123 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 + G +E E+ G + I + FD L A+L++TDEL+R L Sbjct: 124 LGGVEGGEVLIEIEENG----EPVTIGLQFDWLSDAKLVLTDELIREVLKTRKDAG 175 >gi|83313173|ref|YP_423437.1| hypothetical protein amb4074 [Magnetospirillum magneticum AMB-1] gi|123540593|sp|Q2VZU7|RIMP_MAGSA RecName: Full=Ribosome maturation factor rimP gi|82948014|dbj|BAE52878.1| Uncharacterized protein conserved in bacteria [Magnetospirillum magneticum AMB-1] Length = 166 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 58/169 (34%), Positives = 93/169 (55%), Gaps = 6/169 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDG-NMTLRDCEELSQAIS 77 M L + ++I P ++ M + V++ L ++ L LQI +R DG M + DC ++S+++S Sbjct: 1 MDLQSRLEALIAPSLDAMGYELVRVQLQGKQRLTLQIMADRKDGVMMAVDDCADISRSVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I Y LEVSSPGIDRP+ R DF+ W G E +++ GK++G Sbjct: 61 ALLDVEDPISAAYTLEVSSPGIDRPLTRAKDFVAWAGFEAKMESCQPIDGRKRFRGKLLG 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNY 186 E G + +IAI + A+L++TDEL+ A+L + Sbjct: 121 LDEAGVNVRLVIEAA-----GEIAIPLADVRGAKLVLTDELIAATLKDQ 164 >gi|317046739|ref|YP_004114387.1| hypothetical protein Pat9b_0506 [Pantoea sp. At-9b] gi|316948356|gb|ADU67831.1| protein of unknown function DUF150 [Pantoea sp. At-9b] Length = 202 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 74/154 (48%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I +E + + V I + + L+I+++ ++ + + DC ++S +S ++ Sbjct: 56 LEQKLTELISAPVEALGYELVGIEFIRGRTSTLRIYIDSEE-GINVDDCADVSHQVSAVM 114 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+DRP+ + R+ G V + ++ +++K G I Sbjct: 115 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFAGEEVGLVLRMAVQNRRKWQGIIKSVEG 174 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + E + ++ A L+ Sbjct: 175 EMITVTVEGKDEV--------FALSNIQKANLVP 200 >gi|148259242|ref|YP_001233369.1| hypothetical protein Acry_0222 [Acidiphilium cryptum JF-5] gi|259585658|sp|A5FV18|RIMP_ACICJ RecName: Full=Ribosome maturation factor rimP gi|146400923|gb|ABQ29450.1| protein of unknown function DUF150 [Acidiphilium cryptum JF-5] Length = 201 Score = 147 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 47/167 (28%), Positives = 96/167 (57%), Gaps = 9/167 (5%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDG-NMTLRDCEELSQAI 76 GL G I+ +I P +E + + V+++++ ++ +QI +R D ++L DCE +S + Sbjct: 35 HTGLEGRIAELIAPGLESIGYELVRVAIMGKQTPTVQIMADRADQTPLSLDDCERISHLV 94 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG-DKQKLIGKI 135 S +LDV++ I + LEVSS GIDRP+ R D+ R+ GH+ ++ + + +++L G + Sbjct: 95 SAVLDVDDPISSAWTLEVSSAGIDRPLTRVKDWNRYAGHLARIDLDVPTASGRKRLTGTV 154 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS 182 +G E ++ + + + + + A+L++T+EL++A+ Sbjct: 155 LGADEAQARVKLD-------SGETVDLPHAHIRRAKLVLTEELIKAT 194 >gi|23016101|ref|ZP_00055861.1| COG0779: Uncharacterized protein conserved in bacteria [Magnetospirillum magnetotacticum MS-1] Length = 165 Score = 147 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 56/169 (33%), Positives = 94/169 (55%), Gaps = 7/169 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDG-NMTLRDCEELSQAIS 77 M L + ++I P ++ M + V++ L ++ L LQI +R DG M + DC ++S+++S Sbjct: 1 MDLQSRLEALIAPSLDAMGYELVRVQLQGKQRLTLQIMADRKDGVMMAVDDCADISRSVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I Y LEVSSPGIDRP+ R DF W G E +++ GK++G Sbjct: 61 ALLDVEDPISAAYTLEVSSPGIDRPLTRAKDFAAWAGFEAKMESCQPIDGRKRFRGKLLG 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNY 186 ETG + + +++I + A+L++TDEL+ A++ + Sbjct: 121 LDETGAHVRL------AVETGEVSIPLADVRGAKLVLTDELIAATVKDQ 163 >gi|144897847|emb|CAM74711.1| protein conserved in bacteria [Magnetospirillum gryphiswaldense MSR-1] Length = 171 Score = 147 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 56/173 (32%), Positives = 93/173 (53%), Gaps = 9/173 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDD-GNMTLRDCEELSQAIS 77 M L + ++ P +E M + V++ + LQ+ ER D NMT+ DC ++S+++S Sbjct: 1 MDLQQRLEALFAPTLEAMGYEMVRVMFQGRSHPTLQVMAERKDGRNMTVDDCADISRSLS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I+ Y LEVSSPGIDRP+ R DF+ W G V E ++ +++ GK++G Sbjct: 61 ALLDVEDPIQSAYALEVSSPGIDRPLTRAKDFITWAGFEVKLEALVGVDGRKRFRGKLLG 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 L + ++++ L SA+L++TDEL+ A + A Sbjct: 121 LEGEAVRLFADG--------AEVSVPLTDLKSAKLVLTDELIAAVTRDEDPQA 165 >gi|78485465|ref|YP_391390.1| hypothetical protein Tcr_1121 [Thiomicrospira crunogena XCL-2] gi|91207998|sp|Q31GK7|RIMP_THICR RecName: Full=Ribosome maturation factor rimP gi|78363751|gb|ABB41716.1| conserved hypothetical protein with DUF150 domain [Thiomicrospira crunogena XCL-2] Length = 151 Score = 147 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 77/157 (49%), Gaps = 9/157 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M L I ++++P IE M F+ L K+ L+I++++D+ +T+ DC ++S+ +S Sbjct: 1 MTLEDKIENLLRPTIETMGFQFWGCEYLPAGKHSTLRIYIDKDEVGVTVDDCGKVSRQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 I+DVE+ I Y LEVSSPG+DRP+ + + G V +++ G + Sbjct: 61 AIMDVEDPISNAYMLEVSSPGMDRPLFHPEQYKAYEGQEVQVRTSSPVMGRKRFKGVMSQ 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 SE+ +E + I F + A ++ Sbjct: 121 VSESDIAVEVDGEL--------YEIPFSLIDKANVVP 149 >gi|114329059|ref|YP_746216.1| hypothetical protein GbCGDNIH1_2395 [Granulibacter bethesdensis CGDNIH1] gi|122325995|sp|Q0BPF9|RIMP_GRABC RecName: Full=Ribosome maturation factor rimP gi|114317233|gb|ABI63293.1| hypothetical cytosolic protein [Granulibacter bethesdensis CGDNIH1] Length = 178 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 54/177 (30%), Positives = 97/177 (54%), Gaps = 9/177 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-MTLRDCEELSQ 74 L I+ +I P + +M F V++++L + +QI +R DG+ + + DCE +S Sbjct: 3 VAQTPLEQRIAGLIAPGLADMGFELVRVAVLGREQPTVQIMADRADGSLIGIDDCEAISH 62 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS-SGDKQKLIG 133 A +LDVE++I+ + LEVSS GIDRP+ R D++R+ GH+ E+ + G +++ G Sbjct: 63 AAGALLDVEDVIQSTWNLEVSSAGIDRPLTRVKDWVRFAGHLAKVEMSIPGPGGRRRFSG 122 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 ++G ET L + ++++ D L A+L++TD L+ A+ + G Sbjct: 123 TVLGADETAARLRLDD-------GEEVSLPMDGLKKAKLVLTDALIDATAQDAGVAD 172 >gi|27362892|gb|AAN86998.1| YhbC-like protein [Pectobacterium carotovorum subsp. carotovorum] Length = 191 Score = 145 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 76/154 (49%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I + + + V I + + L+I+++ +D +T+ DC ++S +S +L Sbjct: 45 LEQKLTEMISAPVAALGYELVGIEFIRSRQSTLRIYIDSED-GITVDDCADVSHQVSAVL 103 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG++RP+ + +L + G V + ++ +++K +G I Sbjct: 104 DVEDPITVAYNLEVSSPGLERPLFTAAHYLHFVGEEVTVVLRMAVQNRRKWLGVIKAVDG 163 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + E + ++ A L+ Sbjct: 164 EMITITVEGKDEV--------FALSNIQKANLVP 189 >gi|253686984|ref|YP_003016174.1| hypothetical protein PC1_0583 [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753562|gb|ACT11638.1| protein of unknown function DUF150 [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 191 Score = 145 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 76/154 (49%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I + + + V I + + L+I+++ +D +T+ DC ++S +S +L Sbjct: 45 LEQKLTEMISAPVAALGYELVGIEFIRSRQSTLRIYIDSED-GITVDDCADVSHQVSAVL 103 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG++RP+ + +L + G V + ++ +++K +G I Sbjct: 104 DVEDPITVAYNLEVSSPGLERPLFTAAHYLHFVGEEVTVVLRMAVQNRRKWLGVIKAVDG 163 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + E + ++ A L+ Sbjct: 164 EMITITVEGKDEV--------FALSNIQKANLVP 189 >gi|254038336|ref|ZP_04872394.1| conserved hypothetical protein [Escherichia sp. 1_1_43] gi|293449506|ref|ZP_06663927.1| hypothetical protein ECCG_02538 [Escherichia coli B088] gi|226839960|gb|EEH71981.1| conserved hypothetical protein [Escherichia sp. 1_1_43] gi|291322596|gb|EFE62025.1| hypothetical protein ECCG_02538 [Escherichia coli B088] Length = 163 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 74/154 (48%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I +E + F V I + + L+I+++ +D + + DC ++S +S +L Sbjct: 17 LEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSED-GINVDDCADVSHQVSAVL 75 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+DRP+ + R+ G V + ++ +++K G I Sbjct: 76 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 135 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + E + ++ A L+ Sbjct: 136 EMITVTVEGKDEV--------FALSNIQKANLVP 161 >gi|114321099|ref|YP_742782.1| hypothetical protein Mlg_1950 [Alkalilimnicola ehrlichii MLHE-1] gi|114227493|gb|ABI57292.1| protein of unknown function DUF150 [Alkalilimnicola ehrlichii MLHE-1] Length = 176 Score = 144 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 46/154 (29%), Positives = 79/154 (51%), Gaps = 9/154 (5%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + ++I P++ M + V I LL+I+++ D +TL DCE S+ IS +L Sbjct: 29 EDTLYALIDPLLTGMGYELVGIEYGGPAGKRLLRIYIDSPD-GITLDDCETCSRQISAVL 87 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I G Y LE+SSPG+DRP+ + SD+ R+ G + + +++ G + G + Sbjct: 88 DVEDPIPGEYTLEISSPGLDRPIFKASDYDRFAGEQIKIRLSAPWEGRRRFKGVLAGLGD 147 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G + + ++ I D + ARLI+ Sbjct: 148 EGVRV-------VEAQGDEVQIPLDLIEKARLIL 174 >gi|110833188|ref|YP_692047.1| hypothetical protein ABO_0327 [Alcanivorax borkumensis SK2] gi|110646299|emb|CAL15775.1| conserved hypothetical protein [Alcanivorax borkumensis SK2] Length = 181 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 41/168 (24%), Positives = 83/168 (49%), Gaps = 12/168 (7%) Query: 5 HFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNM 64 HFL E + ++ ++ PV+E++ F + ++ + +L++F++ D + Sbjct: 21 HFLFVPAERFMSKRT---EQLTELLAPVVEDLGFVLWGVEYIQGRGAVLRVFIDHAD-GI 76 Query: 65 TLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS 124 ++ DC +S +S +LDVE+ I G + LEVSSPG+DRPM + ++ + G V +++ Sbjct: 77 SVDDCAAVSHEVSGVLDVEDPIPGEFNLEVSSPGMDRPMFDITQYVDYIGEDVQLKLLAP 136 Query: 125 SGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 K+K+ I+ +E + + + + + ARL Sbjct: 137 VSGKRKMTAAIVAVDGDTLVVELDGE--------TLRVPYSQVDRARL 176 >gi|237730090|ref|ZP_04560571.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226908696|gb|EEH94614.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 163 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 75/154 (48%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I +E + + V I + + L+I+++ +D + + DC ++S +S ++ Sbjct: 17 LEQKLTEMITAPVEALGYELVGIEFIRGRTSTLRIYIDSED-GINVDDCADVSHQVSAVM 75 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+DRP+ ++R+ G V + ++ +++K G I Sbjct: 76 DVEDPITVAYNLEVSSPGLDRPLFTAEHYVRFLGEEVTLVLRMAVQNRRKWQGVIKAVDG 135 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + E + ++ A L+ Sbjct: 136 EMITVTVEGKDEV--------FALSNIQKANLVP 161 >gi|291616008|ref|YP_003518750.1| YhbC [Pantoea ananatis LMG 20103] gi|291151038|gb|ADD75622.1| YhbC [Pantoea ananatis LMG 20103] gi|327396259|dbj|BAK13681.1| hypothetical UPF0090 protein YhbC [Pantoea ananatis AJ13355] Length = 154 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 74/154 (48%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ ++ +E + + V I + + L+I+++ +D + + DC ++S +S ++ Sbjct: 8 LEQKLTELVSAPVEALGYELVGIEFVRGRTSTLRIYIDSED-GINVDDCADVSHQVSAVM 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+DRP+ + R+ G V+ + ++ +++K G I Sbjct: 67 DVEDPITVPYHLEVSSPGLDRPLFTAEHYARFTGDEVSLVLRMAVQNRRKWQGIIKSVEG 126 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E E + ++ A L+ Sbjct: 127 EMITVNVEGNDEV--------FALSNIQKANLVP 152 >gi|251791037|ref|YP_003005758.1| hypothetical protein Dd1591_3467 [Dickeya zeae Ech1591] gi|247539658|gb|ACT08279.1| protein of unknown function DUF150 [Dickeya zeae Ech1591] Length = 154 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 76/154 (49%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I +E + + V I + + L+I+++ +D +T+ DC ++S +S +L Sbjct: 8 LEQKLTEMISAPVEALGYELVGIEFIRGRQSTLRIYIDSED-GITVDDCADVSHQVSAVL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+DRP+ + + + G V+ + ++ +++K G I Sbjct: 67 DVEDPISVAYNLEVSSPGLDRPLFTAAHYAHFVGEEVSLVLRMAVQNRRKWQGIIKSVEG 126 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + E + ++ A L+ Sbjct: 127 EMITVTVDGKEEV--------FALSNIQKANLVP 152 >gi|293393155|ref|ZP_06637470.1| conserved hypothetical protein [Serratia odorifera DSM 4582] gi|291424301|gb|EFE97515.1| conserved hypothetical protein [Serratia odorifera DSM 4582] Length = 187 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 74/154 (48%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ ++ +E + F V I + + L+I+++ + + + DC ++S +S +L Sbjct: 41 LEQKLTEMLSAPVEALGFELVGIEFIRARQSTLRIYIDS-ENGINVDDCADVSHQVSAVL 99 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ + Y LEVSSPG+DRPM + R+ G V+ + ++ +++K G I Sbjct: 100 DVEDPVTVAYNLEVSSPGLDRPMFTAEHYTRFLGEEVSLVLRMAVQNRRKWQGIIKSVEG 159 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + E + ++ A L+ Sbjct: 160 EMITVTVDGKDEV--------FALSNIQKANLVP 185 >gi|156935696|ref|YP_001439612.1| hypothetical protein ESA_03563 [Cronobacter sakazakii ATCC BAA-894] gi|259585769|sp|A7MQE3|RIMP_ENTS8 RecName: Full=Ribosome maturation factor rimP gi|156533950|gb|ABU78776.1| hypothetical protein ESA_03563 [Cronobacter sakazakii ATCC BAA-894] Length = 160 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 75/154 (48%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I +E + + V I + + L+I+++ +D +T+ DC ++S +S +L Sbjct: 14 LEQKLTEMITAPVEALGYELVGIEFIRGRTSTLRIYIDSED-GITVDDCADVSHQVSSVL 72 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+DRP+ + R+ G V + ++ +++K G I Sbjct: 73 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARYTGEEVTLVLRMAVQNRRKWQGIIKAVDG 132 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + E + ++ A L+ Sbjct: 133 EMITVAVDGKDEV--------FALSNIQRANLVP 158 >gi|271499172|ref|YP_003332197.1| hypothetical protein Dd586_0598 [Dickeya dadantii Ech586] gi|270342727|gb|ACZ75492.1| protein of unknown function DUF150 [Dickeya dadantii Ech586] Length = 152 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 77/159 (48%), Gaps = 9/159 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ +I +E + + V I + + L+I+++ +D +T+ DC ++S Sbjct: 1 MGLSTLEQKLTEMISAPVEALGYELVGIEFIRGRQSTLRIYIDSED-GITVDDCADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LEVSSPG+DRP+ + + + G V+ + ++ +++K G I Sbjct: 60 VSAVLDVEDPISVAYNLEVSSPGLDRPLFTAAHYAHFVGEEVSLVLRMAVQNRRKWQGII 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + E + ++ A L+ Sbjct: 120 KSVEGEMITVTVEGKDEV--------FALSNIQKANLVP 150 >gi|163796765|ref|ZP_02190723.1| hypothetical protein BAL199_13523 [alpha proteobacterium BAL199] gi|159178019|gb|EDP62566.1| hypothetical protein BAL199_13523 [alpha proteobacterium BAL199] Length = 179 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 61/170 (35%), Positives = 93/170 (54%), Gaps = 7/170 (4%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDD-GNMTLRDCEELSQAISPIL 80 A I S+I P IE M + V++ + + LQI ER D M + DC E+S++IS IL Sbjct: 11 ARRIESIIGPSIEAMGYALVRVMITGGRRPTLQIMAERADGSGMNVDDCAEISRSISAIL 70 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I G Y LEVSSPGIDRP+ R DF R+ G ++ +++ G+++G + Sbjct: 71 DVEDPITGEYTLEVSSPGIDRPLTRLDDFRRFAGFEARIDMAELIEGRKRFGGRLIGVDD 130 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 L + G ++ A+ F+ + A+L++TDEL+ AS A Sbjct: 131 ADRVLLETAPGVRE------ALPFEGIARAKLVLTDELVAASAPAGREGA 174 >gi|326402395|ref|YP_004282476.1| hypothetical protein ACMV_02470 [Acidiphilium multivorum AIU301] gi|325049256|dbj|BAJ79594.1| hypothetical protein ACMV_02470 [Acidiphilium multivorum AIU301] Length = 174 Score = 142 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 47/167 (28%), Positives = 96/167 (57%), Gaps = 9/167 (5%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDG-NMTLRDCEELSQAI 76 GL G I+ +I P +E + + V+++++ ++ +QI +R D ++L DCE +S + Sbjct: 8 HTGLEGRIAELIAPGLESIGYELVRVAIMGKQTPTVQIMADRADQTPLSLDDCERISHLV 67 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG-DKQKLIGKI 135 S +LDV++ I + LEVSS GIDRP+ R D+ R+ GH+ ++ + + +++L G + Sbjct: 68 SAVLDVDDPISSAWTLEVSSAGIDRPLTRVKDWNRYAGHLARIDLDVPTASGRKRLTGTV 127 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS 182 +G E ++ + + + + + A+L++T+EL++A+ Sbjct: 128 LGADEAQARVKLD-------SGETVDLPHAHIRRAKLVLTEELIKAT 167 >gi|91212592|ref|YP_542578.1| hypothetical protein UTI89_C3601 [Escherichia coli UTI89] gi|170680823|ref|YP_001745444.1| hypothetical protein EcSMS35_3466 [Escherichia coli SMS-3-5] gi|187775784|ref|ZP_02798170.2| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196] gi|188024835|ref|ZP_02774257.2| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113] gi|189010333|ref|ZP_02806320.2| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076] gi|189401946|ref|ZP_02779158.2| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401] gi|189403296|ref|ZP_02794595.2| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486] gi|189404085|ref|ZP_02787144.2| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501] gi|189404788|ref|ZP_02811062.2| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869] gi|189405548|ref|ZP_02822778.2| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508] gi|191168030|ref|ZP_03029830.1| conserved hypothetical protein [Escherichia coli B7A] gi|193062091|ref|ZP_03043187.1| conserved hypothetical protein [Escherichia coli E22] gi|193067407|ref|ZP_03048375.1| conserved hypothetical protein [Escherichia coli E110019] gi|194430231|ref|ZP_03062729.1| conserved hypothetical protein [Escherichia coli B171] gi|194438776|ref|ZP_03070862.1| conserved hypothetical protein [Escherichia coli 101-1] gi|208808473|ref|ZP_03250810.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206] gi|208812353|ref|ZP_03253682.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045] gi|208820794|ref|ZP_03261114.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042] gi|209400717|ref|YP_002272641.1| hypothetical protein ECH74115_4491 [Escherichia coli O157:H7 str. EC4115] gi|217327331|ref|ZP_03443414.1| conserved hypothetical protein [Escherichia coli O157:H7 str. TW14588] gi|237706077|ref|ZP_04536558.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|293406781|ref|ZP_06650707.1| hypothetical protein ECGG_02091 [Escherichia coli FVEC1412] gi|298382522|ref|ZP_06992119.1| hypothetical protein ECFG_02283 [Escherichia coli FVEC1302] gi|331643870|ref|ZP_08345001.1| putative cytoplasmic protein [Escherichia coli H736] gi|331648971|ref|ZP_08350059.1| putative cytoplasmic protein [Escherichia coli M605] gi|331654776|ref|ZP_08355776.1| putative cytoplasmic protein [Escherichia coli M718] gi|331674708|ref|ZP_08375467.1| putative cytoplasmic protein [Escherichia coli TA280] gi|331679251|ref|ZP_08379923.1| putative cytoplasmic protein [Escherichia coli H591] gi|332279999|ref|ZP_08392412.1| conserved hypothetical protein [Shigella sp. D9] gi|26110182|gb|AAN82368.1|AE016767_128 Hypothetical protein yhbC [Escherichia coli CFT073] gi|91074166|gb|ABE09047.1| conserved hypothetical protein [Escherichia coli UTI89] gi|170518541|gb|ACB16719.1| conserved hypothetical protein [Escherichia coli SMS-3-5] gi|187770840|gb|EDU34684.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196] gi|188016402|gb|EDU54524.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113] gi|189001090|gb|EDU70076.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076] gi|189358736|gb|EDU77155.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401] gi|189361416|gb|EDU79835.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486] gi|189367607|gb|EDU86023.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501] gi|189374130|gb|EDU92546.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869] gi|189379725|gb|EDU98141.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508] gi|190901899|gb|EDV61648.1| conserved hypothetical protein [Escherichia coli B7A] gi|192932311|gb|EDV84909.1| conserved hypothetical protein [Escherichia coli E22] gi|192959364|gb|EDV89799.1| conserved hypothetical protein [Escherichia coli E110019] gi|194411732|gb|EDX28056.1| conserved hypothetical protein [Escherichia coli B171] gi|194422248|gb|EDX38249.1| conserved hypothetical protein [Escherichia coli 101-1] gi|208728274|gb|EDZ77875.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206] gi|208733630|gb|EDZ82317.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045] gi|208740917|gb|EDZ88599.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042] gi|209162117|gb|ACI39550.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4115] gi|217319698|gb|EEC28123.1| conserved hypothetical protein [Escherichia coli O157:H7 str. TW14588] gi|226899117|gb|EEH85376.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|291426787|gb|EFE99819.1| hypothetical protein ECGG_02091 [Escherichia coli FVEC1412] gi|298277662|gb|EFI19178.1| hypothetical protein ECFG_02283 [Escherichia coli FVEC1302] gi|323376934|gb|ADX49202.1| protein of unknown function DUF150 [Escherichia coli KO11] gi|331037341|gb|EGI09565.1| putative cytoplasmic protein [Escherichia coli H736] gi|331042718|gb|EGI14860.1| putative cytoplasmic protein [Escherichia coli M605] gi|331048158|gb|EGI20235.1| putative cytoplasmic protein [Escherichia coli M718] gi|331068147|gb|EGI39543.1| putative cytoplasmic protein [Escherichia coli TA280] gi|331073316|gb|EGI44639.1| putative cytoplasmic protein [Escherichia coli H591] gi|332102351|gb|EGJ05697.1| conserved hypothetical protein [Shigella sp. D9] Length = 154 Score = 142 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 74/154 (48%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I +E + F V I + + L+I+++ +D + + DC ++S +S +L Sbjct: 8 LEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSED-GINVDDCADVSHQVSAVL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+DRP+ + R+ G V + ++ +++K G I Sbjct: 67 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 126 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + E + ++ A L+ Sbjct: 127 EMITVTVEGKDEV--------FALSNIQKANLVP 152 >gi|283788202|ref|YP_003368067.1| hypothetical protein ROD_46621 [Citrobacter rodentium ICC168] gi|282951656|emb|CBG91356.1| conserved hypothetical protein [Citrobacter rodentium ICC168] Length = 154 Score = 142 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 75/154 (48%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I +E + + V I + + L+I+++ +D + + DC ++S +S ++ Sbjct: 8 LEQKLTEMITAPVEALGYELVGIEFIRGRTSTLRIYIDSED-GINVDDCADVSHQVSAVM 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+DRP+ + R+ G V+ + ++ +++K G I Sbjct: 67 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFLGEEVSLVLRMAVQNRRKWQGVIKAVDG 126 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + E + ++ A L+ Sbjct: 127 EMITVAVEGKDEV--------FALSNIQKANLVP 152 >gi|191172206|ref|ZP_03033749.1| conserved hypothetical protein [Escherichia coli F11] gi|194433780|ref|ZP_03066055.1| conserved hypothetical protein [Shigella dysenteriae 1012] gi|227887893|ref|ZP_04005698.1| UPF0090 protein yhbC [Escherichia coli 83972] gi|238902274|ref|YP_002928070.1| hypothetical protein BWG_2874 [Escherichia coli BW2952] gi|291284546|ref|YP_003501364.1| hypothetical protein G2583_3895 [Escherichia coli O55:H7 str. CB9615] gi|331659459|ref|ZP_08360401.1| putative cytoplasmic protein [Escherichia coli TA206] gi|331664784|ref|ZP_08365689.1| putative cytoplasmic protein [Escherichia coli TA143] gi|331669999|ref|ZP_08370844.1| putative cytoplasmic protein [Escherichia coli TA271] gi|331684819|ref|ZP_08385411.1| putative cytoplasmic protein [Escherichia coli H299] gi|67476527|sp|P0A8A9|RIMP_ECOL6 RecName: Full=Ribosome maturation factor rimP gi|67476528|sp|P0A8B0|RIMP_ECO57 RecName: Full=Ribosome maturation factor rimP gi|67476531|sp|P0A8B1|RIMP_SHIFL RecName: Full=Ribosome maturation factor rimP gi|91208385|sp|Q32BG3|RIMP_SHIDS RecName: Full=Ribosome maturation factor rimP gi|91208386|sp|Q3YX71|RIMP_SHISS RecName: Full=Ribosome maturation factor rimP gi|166979883|sp|A1AG75|RIMP_ECOK1 RecName: Full=Ribosome maturation factor rimP gi|259585759|sp|C4ZSR1|RIMP_ECOBW RecName: Full=Ribosome maturation factor rimP gi|259585820|sp|B6I1P5|RIMP_ECOSE RecName: Full=Ribosome maturation factor rimP gi|259585821|sp|B1LFS2|RIMP_ECOSM RecName: Full=Ribosome maturation factor rimP gi|259585822|sp|Q1R6G7|RIMP_ECOUT RecName: Full=Ribosome maturation factor rimP gi|259585823|sp|B5YS60|RIMP_ECO5E RecName: Full=Ribosome maturation factor rimP gi|259585825|sp|B1IQV1|RIMP_ECOLC RecName: Full=Ribosome maturation factor rimP gi|259585826|sp|B7UJ65|RIMP_ECO27 RecName: Full=Ribosome maturation factor rimP gi|12517781|gb|AAG58306.1|AE005545_8 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|606110|gb|AAA57973.1| gtg start; differences from database entry [Escherichia coli str. K-12 substr. MG1655] gi|13363524|dbj|BAB37474.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|30042769|gb|AAP18492.1| hypothetical protein S3428 [Shigella flexneri 2a str. 2457T] gi|56383831|gb|AAN44678.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|73857184|gb|AAZ89891.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|81242632|gb|ABB63342.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|115514590|gb|ABJ02665.1| conserved hypothetical protein [Escherichia coli APEC O1] gi|190907516|gb|EDV67112.1| conserved hypothetical protein [Escherichia coli F11] gi|194418043|gb|EDX34137.1| conserved hypothetical protein [Shigella dysenteriae 1012] gi|209758318|gb|ACI77471.1| hypothetical protein ECs4051 [Escherichia coli] gi|209758320|gb|ACI77472.1| hypothetical protein ECs4051 [Escherichia coli] gi|209758322|gb|ACI77473.1| hypothetical protein ECs4051 [Escherichia coli] gi|209758324|gb|ACI77474.1| hypothetical protein ECs4051 [Escherichia coli] gi|209758326|gb|ACI77475.1| hypothetical protein ECs4051 [Escherichia coli] gi|222034889|emb|CAP77632.1| UPF0090 protein yhbC [Escherichia coli LF82] gi|227835289|gb|EEJ45755.1| UPF0090 protein yhbC [Escherichia coli 83972] gi|238860383|gb|ACR62381.1| conserved protein [Escherichia coli BW2952] gi|281602554|gb|ADA75538.1| hypothetical protein SFxv_3524 [Shigella flexneri 2002017] gi|290764419|gb|ADD58380.1| hypothetical protein G2583_3895 [Escherichia coli O55:H7 str. CB9615] gi|323936134|gb|EGB32428.1| yhbC protein [Escherichia coli E1520] gi|323941728|gb|EGB37907.1| yhbC [Escherichia coli E482] gi|323946974|gb|EGB42990.1| yhbC protein [Escherichia coli H120] gi|323951310|gb|EGB47185.1| yhbC [Escherichia coli H252] gi|323957681|gb|EGB53395.1| yhbC [Escherichia coli H263] gi|323961058|gb|EGB56673.1| yhbC [Escherichia coli H489] gi|323966352|gb|EGB61786.1| yhbC [Escherichia coli M863] gi|323970265|gb|EGB65536.1| yhbC [Escherichia coli TA007] gi|323979111|gb|EGB74189.1| yhbC [Escherichia coli TW10509] gi|324115224|gb|EGC09188.1| yhbC [Escherichia fergusonii B253] gi|324119537|gb|EGC13419.1| yhbC [Escherichia coli E1167] gi|325498753|gb|EGC96612.1| hypothetical protein ECD227_2850 [Escherichia fergusonii ECD227] gi|331054041|gb|EGI26070.1| putative cytoplasmic protein [Escherichia coli TA206] gi|331058032|gb|EGI30014.1| putative cytoplasmic protein [Escherichia coli TA143] gi|331062912|gb|EGI34826.1| putative cytoplasmic protein [Escherichia coli TA271] gi|331078434|gb|EGI49640.1| putative cytoplasmic protein [Escherichia coli H299] Length = 152 Score = 142 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 9/159 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ +I +E + F V I + + L+I+++ +D + + DC ++S Sbjct: 1 MGLSTLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSED-GINVDDCADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LEVSSPG+DRP+ + R+ G V + ++ +++K G I Sbjct: 60 VSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + E + ++ A L+ Sbjct: 120 KAVDGEMITVTVEGKDEV--------FALSNIQKANLVP 150 >gi|91208384|sp|Q31W49|RIMP_SHIBS RecName: Full=Ribosome maturation factor rimP gi|81247001|gb|ABB67709.1| conserved hypothetical protein [Shigella boydii Sb227] Length = 152 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 74/159 (46%), Gaps = 9/159 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ +I +E + F V I + L+I+++ +D + + DC ++S Sbjct: 1 MGLSTLEQKLTEMITAPVEALGFELVGIEFIRGHTSTLRIYIDSED-GINVDDCADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LEVSSPG+DRP+ + R+ G V + ++ +++K G I Sbjct: 60 VSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + E + ++ A L+ Sbjct: 120 KAVDGEMITVTVEGKDEV--------FALSNIQKANLVP 150 >gi|192362188|ref|YP_001980957.1| BCR family protein [Cellvibrio japonicus Ueda107] gi|190688353|gb|ACE86031.1| Uncharacterized BCR, YhbC family [Cellvibrio japonicus Ueda107] Length = 196 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 82/162 (50%), Gaps = 11/162 (6%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++ +I PV+E + + L + L+IF++ ++L DCE +S+ IS +L Sbjct: 37 QERLTDLIVPVVESLGCELWGLEYLTQGRYTTLRIFIDGP-QGVSLDDCERVSRQISAVL 95 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I+G Y LEVSSPG+DRP+ ++ + R+ G V + ++ +++ G I E Sbjct: 96 DVEDPIDGEYTLEVSSPGLDRPLYTEAQYARYVGETVNLRLRIAVEGRRRFKGVISAIEE 155 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT-DELLRA 181 L+ + + + +++ L+ D++LR Sbjct: 156 GALLLQFDN--------QTVRLPIETIDKGNLVPRYDDILRE 189 >gi|296533458|ref|ZP_06896040.1| protein of hypothetical function DUF150 [Roseomonas cervicalis ATCC 49957] gi|296266213|gb|EFH12256.1| protein of hypothetical function DUF150 [Roseomonas cervicalis ATCC 49957] Length = 195 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 49/164 (29%), Positives = 87/164 (53%), Gaps = 8/164 (4%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-MTLRDCE 70 E + + GL I++ IQP + M + V++ + ++ +Q+ +R DG + + DCE Sbjct: 4 EDDLPQNEGLEARIAAAIQPTLTAMGYEIVRVQIHGKQTPTVQVMADRADGALIGVADCE 63 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 +S A+ +LDV++ G + LEVSSPGIDRP+ R D+LR+ GH+ E+ + +++ Sbjct: 64 AISHAVGAVLDVDDPFSGEWNLEVSSPGIDRPLTRTKDWLRFTGHLAIAEMSIPFEGRRR 123 Query: 131 LIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G I+G E L E + A+ + A+L++ Sbjct: 124 FRGTILGADEASVRLRLE-------EGTEYALPRHDIRRAKLVL 160 >gi|209966174|ref|YP_002299089.1| hypothetical protein RC1_2909 [Rhodospirillum centenum SW] gi|259586184|sp|B6IVF3|RIMP_RHOCS RecName: Full=Ribosome maturation factor rimP gi|209959640|gb|ACJ00277.1| conserved hypothetical protein [Rhodospirillum centenum SW] Length = 252 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 58/181 (32%), Positives = 85/181 (46%), Gaps = 20/181 (11%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-MTLRDCEELSQAIS 77 M I +I+P +E M + V++ L + LQI ER DG MT+ DC ++S+A+S Sbjct: 1 MEAVERIGRIIEPSVEAMGYELVRVQLSGGQRPTLQIMAERSDGAAMTVEDCADISRAVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ + G Y LEVSSPGIDRP+ R DF R+ G E +++ G + G Sbjct: 61 ALLDVEDPLPGAYTLEVSSPGIDRPLTRLKDFERFAGFEARLETKAPVDGRKRFRGFLAG 120 Query: 138 TSETGFFLEKEKRGEKDMNELQ-------------------IAISFDSLLSARLIVTDEL 178 + L + + I F +L A+L +TDEL Sbjct: 121 IEDDAVRLALPVEKKARKGAKAAPTRDAADAGEAGDAEATLVVIPFGLVLKAKLELTDEL 180 Query: 179 L 179 L Sbjct: 181 L 181 >gi|205354192|ref|YP_002227993.1| hypothetical protein SG3179 [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|259586192|sp|B5REN8|RIMP_SALG2 RecName: Full=Ribosome maturation factor rimP gi|205273973|emb|CAR38978.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326629313|gb|EGE35656.1| Ribosome maturation factor rimP [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 154 Score = 141 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 40/154 (25%), Positives = 75/154 (48%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I +E + + V I + + L+I+++ +D + + DC ++S +S +L Sbjct: 8 LEQKLTEMITAPVEALGYELVGIEFIRGRTSTLRIYIDSED-GINVDDCADVSHQVSAVL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+DRPM + R+ G VA + ++ +++K G I Sbjct: 67 DVEDPISVAYNLEVSSPGLDRPMFTADHYARFQGEEVALVLRMAVQNRRKWQGIIKAVDG 126 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + E + ++ A L+ Sbjct: 127 EMITVTVEGKDEV--------FALSNIQKANLVP 152 >gi|117618499|ref|YP_857796.1| 15 kDa protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559906|gb|ABK36854.1| 15 kDa protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 175 Score = 141 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 79/163 (48%), Gaps = 10/163 (6%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEEL 72 R L ++ +++ + + F I + K+ L+++++ + +++ +C E+ Sbjct: 20 RRVTLATLEQRLTDLLEAPVVALGFELWGIEFIRAGKHSTLRVYIDG-EHGVSVENCAEV 78 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S + I+DVE+ I Y LEVSSPG+DRP+ + + F ++ G A + +++ +++K Sbjct: 79 SHQVGAIMDVEDPITEEYYLEVSSPGLDRPLFKVAQFEKYVGQEAAVTLRMATNNRRKFK 138 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 G I L + + E ++F ++ A ++ Sbjct: 139 GVIKAVQGDMITLTVDGKDEV--------LAFTNIQKANIVPN 173 >gi|54295604|ref|YP_128019.1| hypothetical protein lpl2691 [Legionella pneumophila str. Lens] gi|53755436|emb|CAH16932.1| hypothetical protein lpl2691 [Legionella pneumophila str. Lens] Length = 152 Score = 141 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 44/159 (27%), Positives = 82/159 (51%), Gaps = 10/159 (6%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELS 73 +F + D+ +++P+I+ M + + K+ LL+I++++ D + + DC+E+S Sbjct: 1 MFIHTMINDDLIVLLEPIIKNMGYELWGCEYLSQGKHSLLRIYIDKPD-GIGIDDCQEVS 59 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 + +S +LDVE+ I GHY LE+SSPGI RP+ + R+ G+ + + K+KL G Sbjct: 60 KQVSAMLDVEDPIPGHYSLEISSPGIPRPLFSIWQYQRYLGYEIHVKTFKPVNGKRKLSG 119 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 I+ S L+ + I +++ A L Sbjct: 120 IIVSASGDTIVLDINNEHQ--------EILLSNIVKANL 150 >gi|258404631|ref|YP_003197373.1| hypothetical protein Dret_0498 [Desulfohalobium retbaense DSM 5692] gi|257796858|gb|ACV67795.1| protein of unknown function DUF150 [Desulfohalobium retbaense DSM 5692] Length = 157 Score = 141 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 74/160 (46%), Gaps = 9/160 (5%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAI 76 L +S +I+P+ + + + +L+++V+ + +++ C LS+ I Sbjct: 1 MHEKLYERLSELIKPLAASCGLDVWGMEIPASRGGVLRVYVDSPN-GVSIDQCATLSRHI 59 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 S LDVE+ + G Y LEVSSPG++RP S + G VA ++ ++K G ++ Sbjct: 60 SVTLDVEDPLPGPYTLEVSSPGLERPFFTVSQLPPYIGQPVALKLQAPMQGRKKWRGVLI 119 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 L+ + ++ +++ + ARL+ + Sbjct: 120 EAEGDHLTLDVDG--------VEHVFAWEDVEKARLVFQE 151 >gi|89109935|ref|AP_003715.1| hypothetical protein [Escherichia coli str. K-12 substr. W3110] gi|110643411|ref|YP_671141.1| hypothetical protein ECP_3258 [Escherichia coli 536] gi|110807039|ref|YP_690559.1| hypothetical protein SFV_3200 [Shigella flexneri 5 str. 8401] gi|157159426|ref|YP_001464647.1| hypothetical protein EcE24377A_3655 [Escherichia coli E24377A] gi|157162655|ref|YP_001459973.1| hypothetical protein EcHS_A3362 [Escherichia coli HS] gi|161367518|ref|NP_289746.2| hypothetical protein Z4531 [Escherichia coli O157:H7 EDL933] gi|161485816|ref|NP_708971.3| hypothetical protein SF3211 [Shigella flexneri 2a str. 301] gi|161486109|ref|NP_755794.2| hypothetical protein c3927 [Escherichia coli CFT073] gi|161486428|ref|NP_838681.2| hypothetical protein S3428 [Shigella flexneri 2a str. 2457T] gi|161950037|ref|YP_404833.2| hypothetical protein SDY_3349 [Shigella dysenteriae Sd197] gi|161986442|ref|YP_312126.2| hypothetical protein SSON_3316 [Shigella sonnei Ss046] gi|162139721|ref|NP_312078.3| hypothetical protein ECs4051 [Escherichia coli O157:H7 str. Sakai] gi|170082707|ref|YP_001732027.1| hypothetical protein ECDH10B_3344 [Escherichia coli str. K-12 substr. DH10B] gi|187733192|ref|YP_001881913.1| hypothetical protein SbBS512_E3601 [Shigella boydii CDC 3083-94] gi|188492035|ref|ZP_02999305.1| conserved hypothetical protein [Escherichia coli 53638] gi|195938390|ref|ZP_03083772.1| hypothetical protein EscherichcoliO157_18476 [Escherichia coli O157:H7 str. EC4024] gi|218550455|ref|YP_002384246.1| hypothetical protein EFER_3149 [Escherichia fergusonii ATCC 35469] gi|218555742|ref|YP_002388655.1| hypothetical protein ECIAI1_3320 [Escherichia coli IAI1] gi|218560242|ref|YP_002393155.1| hypothetical protein ECS88_3554 [Escherichia coli S88] gi|218691462|ref|YP_002399674.1| hypothetical protein ECED1_3830 [Escherichia coli ED1a] gi|218696877|ref|YP_002404544.1| hypothetical protein EC55989_3590 [Escherichia coli 55989] gi|218701941|ref|YP_002409570.1| hypothetical protein ECIAI39_3667 [Escherichia coli IAI39] gi|218706792|ref|YP_002414311.1| hypothetical protein ECUMN_3652 [Escherichia coli UMN026] gi|226524751|ref|NP_417639.6| ribosome maturation factor for 30S subunits [Escherichia coli str. K-12 substr. MG1655] gi|229597230|ref|YP_001723532.2| hypothetical protein EcolC_0528 [Escherichia coli ATCC 8739] gi|229775958|ref|YP_858789.2| hypothetical protein APECO1_3260 [Escherichia coli APEC O1] gi|254163114|ref|YP_003046222.1| hypothetical protein ECB_03037 [Escherichia coli B str. REL606] gi|254795121|ref|YP_003079958.1| hypothetical protein ECSP_4145 [Escherichia coli O157:H7 str. TW14359] gi|256018910|ref|ZP_05432775.1| hypothetical protein ShiD9_08333 [Shigella sp. D9] gi|256024254|ref|ZP_05438119.1| hypothetical protein E4_12823 [Escherichia sp. 4_1_40B] gi|307313123|ref|ZP_07592749.1| protein of unknown function DUF150 [Escherichia coli W] gi|312968491|ref|ZP_07782700.1| conserved hypothetical protein [Escherichia coli 2362-75] gi|123342478|sp|Q0T0B1|RIMP_SHIF8 RecName: Full=Ribosome maturation factor rimP gi|123343572|sp|Q0TCT9|RIMP_ECOL5 RecName: Full=Ribosome maturation factor rimP gi|259585755|sp|A7ZS68|RIMP_ECO24 RecName: Full=Ribosome maturation factor rimP gi|259585756|sp|B7NKN9|RIMP_ECO7I RecName: Full=Ribosome maturation factor rimP gi|259585757|sp|B7N0V5|RIMP_ECO81 RecName: Full=Ribosome maturation factor rimP gi|259585758|sp|B7M078|RIMP_ECO8A RecName: Full=Ribosome maturation factor rimP gi|259585760|sp|B1XGY2|RIMP_ECODH RecName: Full=Ribosome maturation factor rimP gi|259585761|sp|A8A4Y6|RIMP_ECOHS RecName: Full=Ribosome maturation factor rimP gi|259585764|sp|B7MB91|RIMP_ECO45 RecName: Full=Ribosome maturation factor rimP gi|259585765|sp|B7LHN5|RIMP_ECO55 RecName: Full=Ribosome maturation factor rimP gi|259585766|sp|B7NDF6|RIMP_ECOLU RecName: Full=Ribosome maturation factor rimP gi|259585770|sp|B7LR39|RIMP_ESCF3 RecName: Full=Ribosome maturation factor rimP gi|259586197|sp|B2U205|RIMP_SHIB3 RecName: Full=Ribosome maturation factor rimP gi|269849638|sp|P0A8A8|RIMP_ECOLI RecName: Full=Ribosome maturation factor rimP gi|85675966|dbj|BAE77216.1| conserved hypothetical protein [Escherichia coli str. K12 substr. W3110] gi|110345003|gb|ABG71240.1| putative cytoplasmic protein [Escherichia coli 536] gi|110616587|gb|ABF05254.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] gi|157068335|gb|ABV07590.1| conserved hypothetical protein [Escherichia coli HS] gi|157081456|gb|ABV21164.1| conserved hypothetical protein [Escherichia coli E24377A] gi|169890542|gb|ACB04249.1| conserved protein [Escherichia coli str. K-12 substr. DH10B] gi|187430184|gb|ACD09458.1| conserved hypothetical protein [Shigella boydii CDC 3083-94] gi|188487234|gb|EDU62337.1| conserved hypothetical protein [Escherichia coli 53638] gi|218353609|emb|CAU99801.1| conserved hypothetical protein [Escherichia coli 55989] gi|218357996|emb|CAQ90642.1| conserved hypothetical protein [Escherichia fergusonii ATCC 35469] gi|218362510|emb|CAR00134.1| conserved hypothetical protein [Escherichia coli IAI1] gi|218367011|emb|CAR04782.1| conserved hypothetical protein [Escherichia coli S88] gi|218371927|emb|CAR19783.1| conserved hypothetical protein [Escherichia coli IAI39] gi|218429026|emb|CAR09973.2| conserved hypothetical protein [Escherichia coli ED1a] gi|218433889|emb|CAR14806.1| conserved hypothetical protein [Escherichia coli UMN026] gi|226510978|gb|AAC76204.4| ribosome maturation factor for 30S subunits [Escherichia coli str. K-12 substr. MG1655] gi|242378715|emb|CAQ33505.1| ribosome maturation protein [Escherichia coli BL21(DE3)] gi|253975015|gb|ACT40686.1| hypothetical protein ECB_03037 [Escherichia coli B str. REL606] gi|253979171|gb|ACT44841.1| hypothetical protein ECD_03037 [Escherichia coli BL21(DE3)] gi|254594521|gb|ACT73882.1| conserved protein [Escherichia coli O157:H7 str. TW14359] gi|294489705|gb|ADE88461.1| conserved hypothetical protein [Escherichia coli IHE3034] gi|306907034|gb|EFN37542.1| protein of unknown function DUF150 [Escherichia coli W] gi|307555266|gb|ADN48041.1| putative cytoplasmic protein [Escherichia coli ABU 83972] gi|309703598|emb|CBJ02938.1| conserved hypothetical protein [Escherichia coli ETEC H10407] gi|312286709|gb|EFR14620.1| conserved hypothetical protein [Escherichia coli 2362-75] gi|313648588|gb|EFS13030.1| hypothetical protein SF2457T_3054 [Shigella flexneri 2a str. 2457T] gi|315137758|dbj|BAJ44917.1| conserved protein [Escherichia coli DH1] gi|315617253|gb|EFU97862.1| conserved hypothetical protein [Escherichia coli 3431] gi|320181446|gb|EFW56364.1| hypothetical protein SGB_01316 [Shigella boydii ATCC 9905] gi|320194656|gb|EFW69286.1| hypothetical protein EcoM_03098 [Escherichia coli WV_060327] gi|323165128|gb|EFZ50918.1| hypothetical protein SS53G_4591 [Shigella sonnei 53G] gi|323189207|gb|EFZ74491.1| hypothetical protein ECRN5871_2808 [Escherichia coli RN587/1] gi|327255186|gb|EGE66786.1| hypothetical protein ECSTEC7V_5219 [Escherichia coli STEC_7v] gi|332086098|gb|EGI91260.1| hypothetical protein SB521682_3815 [Shigella boydii 5216-82] gi|332752330|gb|EGJ82720.1| hypothetical protein SF434370_3403 [Shigella flexneri 4343-70] gi|332752857|gb|EGJ83242.1| hypothetical protein SFK671_3816 [Shigella flexneri K-671] gi|333014971|gb|EGK34315.1| hypothetical protein SFK227_3827 [Shigella flexneri K-227] Length = 150 Score = 141 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 74/154 (48%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I +E + F V I + + L+I+++ +D + + DC ++S +S +L Sbjct: 4 LEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSED-GINVDDCADVSHQVSAVL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+DRP+ + R+ G V + ++ +++K G I Sbjct: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + E + ++ A L+ Sbjct: 123 EMITVTVEGKDEV--------FALSNIQKANLVP 148 >gi|161984849|ref|YP_409537.2| hypothetical protein SBO_3212 [Shigella boydii Sb227] Length = 150 Score = 141 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 73/154 (47%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I +E + F V I + L+I+++ +D + + DC ++S +S +L Sbjct: 4 LEQKLTEMITAPVEALGFELVGIEFIRGHTSTLRIYIDSED-GINVDDCADVSHQVSAVL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+DRP+ + R+ G V + ++ +++K G I Sbjct: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + E + ++ A L+ Sbjct: 123 EMITVTVEGKDEV--------FALSNIQKANLVP 148 >gi|92115191|ref|YP_575119.1| hypothetical protein Csal_3076 [Chromohalobacter salexigens DSM 3043] gi|122419134|sp|Q1QSY8|RIMP_CHRSD RecName: Full=Ribosome maturation factor rimP gi|91798281|gb|ABE60420.1| protein of unknown function DUF150 [Chromohalobacter salexigens DSM 3043] Length = 153 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 10/157 (6%) Query: 22 AGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + ++I+PV+ M F + + K+ L I++E D +T+ DC +S+ +S +L Sbjct: 5 DAALKALIEPVVTAMGFELWGVDYLSQGKHSRLVIYIESAD-GVTVDDCAAVSRQVSGVL 63 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I G YRLEVSSPG+DRP+ F + G V ++ ++K G++ G Sbjct: 64 DVEDPISGEYRLEVSSPGMDRPLFTLEQFASFKGSHVKVKLSTPFEGRRKFQGQLAGVEG 123 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 L + + +S+ AR++ + Sbjct: 124 DEILLHLDG--------QEYCFPIESIEQARVVPQFD 152 >gi|194445687|ref|YP_002042545.1| hypothetical protein SNSL254_A3546 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|195873562|ref|ZP_02697406.2| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197248900|ref|YP_002148214.1| hypothetical protein SeAg_B3477 [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197264321|ref|ZP_03164395.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197301026|ref|ZP_02663047.2| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204928262|ref|ZP_03219462.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205357196|ref|ZP_02345817.2| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205357561|ref|ZP_02571247.2| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205359197|ref|ZP_02668054.2| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205360600|ref|ZP_02684674.2| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|259586187|sp|B5F6U0|RIMP_SALA4 RecName: Full=Ribosome maturation factor rimP gi|259586193|sp|B4TJ08|RIMP_SALHS RecName: Full=Ribosome maturation factor rimP gi|259586194|sp|B4T700|RIMP_SALNS RecName: Full=Ribosome maturation factor rimP gi|62129432|gb|AAX67135.1| Hypothetical protein yhbC [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194404350|gb|ACF64572.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194409325|gb|ACF69544.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195633168|gb|EDX51582.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197212603|gb|ACH50000.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197242576|gb|EDY25196.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289178|gb|EDY28547.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204322584|gb|EDZ07781.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205323251|gb|EDZ11090.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205331278|gb|EDZ18042.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205337765|gb|EDZ24529.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205348549|gb|EDZ35180.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 154 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 40/154 (25%), Positives = 75/154 (48%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I +E + + V I + + L+I+++ +D + + DC ++S +S +L Sbjct: 8 LEQKLTEMITAPVEALGYELVGIEFIRGRTSTLRIYIDSED-GINVDDCADVSHQVSAVL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+DRPM + R+ G VA + ++ +++K G I Sbjct: 67 DVEDPISVAYNLEVSSPGLDRPMFTADHYARFQGEEVALVLRMAVQNRRKWQGIIKAVDG 126 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + E + ++ A L+ Sbjct: 127 EMITVTVEGKDEV--------FALSNIQKANLVP 152 >gi|15599940|ref|NP_253434.1| hypothetical protein PA4746 [Pseudomonas aeruginosa PAO1] gi|107103845|ref|ZP_01367763.1| hypothetical protein PaerPA_01004916 [Pseudomonas aeruginosa PACS2] gi|116052893|ref|YP_793210.1| hypothetical protein PA14_62780 [Pseudomonas aeruginosa UCBPP-PA14] gi|152986446|ref|YP_001350788.1| hypothetical protein PSPA7_5464 [Pseudomonas aeruginosa PA7] gi|218893841|ref|YP_002442710.1| hypothetical protein PLES_51311 [Pseudomonas aeruginosa LESB58] gi|254238518|ref|ZP_04931841.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|254244352|ref|ZP_04937674.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|296391573|ref|ZP_06881048.1| hypothetical protein PaerPAb_25623 [Pseudomonas aeruginosa PAb1] gi|313109727|ref|ZP_07795667.1| hypothetical protein PA39016_002040024 [Pseudomonas aeruginosa 39016] gi|34223065|sp|Q9HV53|RIMP_PSEAE RecName: Full=Ribosome maturation factor rimP gi|122257096|sp|Q02FS6|RIMP_PSEAB RecName: Full=Ribosome maturation factor rimP gi|167013034|sp|A6VCK3|RIMP_PSEA7 RecName: Full=Ribosome maturation factor rimP gi|226707668|sp|B7V1F8|RIMP_PSEA8 RecName: Full=Ribosome maturation factor rimP gi|9951008|gb|AAG08132.1|AE004888_7 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|115588114|gb|ABJ14129.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14] gi|126170449|gb|EAZ55960.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126197730|gb|EAZ61793.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|150961604|gb|ABR83629.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7] gi|218774069|emb|CAW29885.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58] gi|310882169|gb|EFQ40763.1| hypothetical protein PA39016_002040024 [Pseudomonas aeruginosa 39016] Length = 152 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 76/156 (48%), Gaps = 10/156 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++ PV+E + + + + ++ +L+++++R + + + DCE +S+ +S ILD Sbjct: 6 EQLQALLAPVVEALGYECWGVEFISQGRHSVLRVYIDRPE-GILIDDCEAVSRQVSGILD 64 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I G Y LEVSSPG+DRP+ F + G V + ++ G + G E Sbjct: 65 VEDPISGEYTLEVSSPGMDRPLFTLEQFAKHAGEQVKIRLRSPYEGRRNYQGILRGVEEQ 124 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 + + + + DS+ A +I + Sbjct: 125 DVVVLVDD--------HEYLLPIDSIDKANIIPRFD 152 >gi|259585827|sp|A8AQ61|RIMP_CITK8 RecName: Full=Ribosome maturation factor rimP Length = 152 Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 9/159 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ +I +E + + V I + + L+I+++ +D + + DC ++S Sbjct: 1 MGLSTLEQKLTEMITAPVEALGYELVGIEFIRGRTSTLRIYIDSED-GINVDDCADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LEVSSPG+DRPM + R+ G V + ++ +++K G I Sbjct: 60 VSAVLDVEDPITVAYNLEVSSPGLDRPMFTAEHYARFLGEEVTLVLRMAVQNRRKWQGVI 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + E + ++ A L+ Sbjct: 120 KAVDGEMITVTVEGKDEV--------FALSNIQKANLVP 150 >gi|259585819|sp|B2VGS4|RIMP_ERWT9 RecName: Full=Ribosome maturation factor rimP Length = 152 Score = 140 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 75/159 (47%), Gaps = 9/159 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ +I +E + + V I + + L+I+++ +D + + DC ++S Sbjct: 1 MGLSTLEQKLTELISAPVEALGYELVGIEFVRGRTSTLRIYIDSED-GINVDDCADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S ++DVE+ I Y LEVSSPG+DRPM + R+ G V+ + ++ +++K G I Sbjct: 60 VSAVMDVEDPITVAYNLEVSSPGLDRPMFTAEHYARFTGEEVSLVLRMAVQNRRKWQGII 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E E + ++ A L+ Sbjct: 120 KSVEGEMITVAVEGNDEV--------FALSNIQKANLVP 150 >gi|308189111|ref|YP_003933242.1| UPF0090 protein yhbC [Pantoea vagans C9-1] gi|308059621|gb|ADO11793.1| UPF0090 protein yhbC [Pantoea vagans C9-1] Length = 150 Score = 140 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 75/154 (48%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ ++ +E + + V I + + +L+I+++ +D + + DC ++S +S ++ Sbjct: 4 LEQKLTELVSAPVEALGYELVGIEFVRSRTSILRIYIDSED-GINVDDCADVSHQVSAVM 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+DRP+ + R+ G V+ + ++ +++K G I Sbjct: 63 DVEDPITVPYNLEVSSPGLDRPLFTAEHYTRFMGEEVSLVLRMAVQNRRKWQGTIKSVDG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E E + ++ A L+ Sbjct: 123 EMITVHVEGSDEV--------FALSNIQKANLVP 148 >gi|54040273|sp|P67219|RIMP_SALTI RecName: Full=Ribosome maturation factor rimP gi|54042668|sp|P67218|RIMP_SALTY RecName: Full=Ribosome maturation factor rimP gi|91208382|sp|Q57JH7|RIMP_SALCH RecName: Full=Ribosome maturation factor rimP gi|91208383|sp|Q5PLA8|RIMP_SALPA RecName: Full=Ribosome maturation factor rimP gi|259586212|sp|A9N734|RIMP_SALPB RecName: Full=Ribosome maturation factor rimP gi|259586213|sp|C0PZ56|RIMP_SALPC RecName: Full=Ribosome maturation factor rimP gi|259586214|sp|B5BGJ7|RIMP_SALPK RecName: Full=Ribosome maturation factor rimP gi|259586216|sp|B5QZW0|RIMP_SALEP RecName: Full=Ribosome maturation factor rimP gi|259586218|sp|A9MP34|RIMP_SALAR RecName: Full=Ribosome maturation factor rimP gi|323131648|gb|ADX19078.1| Ribosome maturation factor rimP [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 152 Score = 140 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 9/159 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ +I +E + + V I + + L+I+++ +D + + DC ++S Sbjct: 1 MGLSTLEQKLTEMITAPVEALGYELVGIEFIRGRTSTLRIYIDSED-GINVDDCADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LEVSSPG+DRPM + R+ G VA + ++ +++K G I Sbjct: 60 VSAVLDVEDPISVAYNLEVSSPGLDRPMFTADHYARFQGEEVALVLRMAVQNRRKWQGII 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + E + ++ A L+ Sbjct: 120 KAVDGEMITVTVEGKDEV--------FALSNIQKANLVP 150 >gi|54298758|ref|YP_125127.1| hypothetical protein lpp2822 [Legionella pneumophila str. Paris] gi|53752543|emb|CAH13975.1| hypothetical protein lpp2822 [Legionella pneumophila str. Paris] Length = 152 Score = 140 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 45/159 (28%), Positives = 83/159 (52%), Gaps = 10/159 (6%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELS 73 +F + D+ +++P+I+ M + + K+ LL+I++++ D + + DC+E+S Sbjct: 1 MFIHTMINDDLIVLLEPIIKNMGYELWGCEYLSQGKHSLLRIYIDKPD-GIGIDDCQEVS 59 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 + +S +LDVE+ I GHY LE+SSPGI RP+ + R+ G+ + + K+KL G Sbjct: 60 KQVSAMLDVEDPIPGHYSLEISSPGIPRPLFSIWQYQRYLGYEIHVKTFKPVNGKRKLSG 119 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 I+ SE L+ + I +++ A L Sbjct: 120 IIVSASEDTIVLDINNEHQ--------EILLSNIVKANL 150 >gi|170765477|ref|ZP_02900288.1| conserved hypothetical protein [Escherichia albertii TW07627] gi|170124623|gb|EDS93554.1| conserved hypothetical protein [Escherichia albertii TW07627] Length = 150 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 73/154 (47%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I +E + F V I + + L+I+++ +D + + DC ++S +S +L Sbjct: 4 LEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSED-GINVDDCADVSHQVSAVL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+DRP+ + R+ G + ++ +++K G I Sbjct: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEATLVLRMAVQNRRKWQGVIKAVDG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + E + ++ A L+ Sbjct: 123 EMITVTVEGKDEV--------FALSNIQKANLVP 148 >gi|146283632|ref|YP_001173785.1| hypothetical protein PST_3312 [Pseudomonas stutzeri A1501] gi|145571837|gb|ABP80943.1| conserved hypothetical protein [Pseudomonas stutzeri A1501] Length = 182 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 38/174 (21%), Positives = 81/174 (46%), Gaps = 11/174 (6%) Query: 5 HFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGN 63 HF ++ L + +++ PV+E + ++ I + ++ LL+++++ + Sbjct: 19 HFSFVQHARGTSMSSKLEQ-LQALLAPVVEALGYQCWGIEFISQGRHSLLRVYIDHAN-G 76 Query: 64 MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVL 123 + + DCE++S+ +S +LDVE+ I Y LEVSSPG+DRP+ ++ G V ++ Sbjct: 77 ILIDDCEKVSRQLSGVLDVEDPISVDYTLEVSSPGMDRPLFTIEQYVAHVGDQVKIKLRS 136 Query: 124 SSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 ++ G + G E + + + + D + A +I + Sbjct: 137 PFEGRRNFQGLLRGVEEQDVVVLVDD--------HEYLLPIDMIDKANIIPRFD 182 >gi|262393380|ref|YP_003285234.1| hypothetical protein VEA_002607 [Vibrio sp. Ex25] gi|262336974|gb|ACY50769.1| UPF0090 domain-containing protein [Vibrio sp. Ex25] Length = 151 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 79/157 (50%), Gaps = 10/157 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ +++ +E + V + + + L+I+++ + + + DC E+S +S Sbjct: 2 TGLERQLTEMLEAPVEASGYELVGLEFIRAGAHSTLRIYIDH-ENGINVDDCAEVSHQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ +++K G I G Sbjct: 61 AVLDVEDPISVAYSLEVSSPGLERPLFKAAHYEQFIGHEVSIVLKMAVANRRKWKGIIHG 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + E + ++ A LI Sbjct: 121 VDGETVTITVDGQQE--------EFALSNISKANLIP 149 >gi|307129383|ref|YP_003881399.1| hypothetical protein Dda3937_02343 [Dickeya dadantii 3937] gi|306526912|gb|ADM96842.1| conserved protein [Dickeya dadantii 3937] Length = 150 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 77/154 (50%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I +E + + V I + + L+I+++ +D +T+ DC ++S +S +L Sbjct: 4 LEQKLTEMISAPVEALGYELVGIEFIRGRQSTLRIYIDSED-GITVDDCADVSHQVSAVL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG++RP+ + + R+ G V+ + ++ +++K G I Sbjct: 63 DVEDPISVAYNLEVSSPGLERPLFTAAHYERFAGEEVSLVLRMAVQNRRKWQGIIKSVEG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + E + ++ A L+ Sbjct: 123 EMITVTVEGKDEV--------FALSNIQKANLVP 148 >gi|238760243|ref|ZP_04621388.1| hypothetical protein yaldo0001_39490 [Yersinia aldovae ATCC 35236] gi|238701566|gb|EEP94138.1| hypothetical protein yaldo0001_39490 [Yersinia aldovae ATCC 35236] Length = 152 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 9/159 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ +I +E + + V I + + L+I+++ DD +T+ C ++S Sbjct: 1 MGLSTLEQKLTEIISAPVEALGYELVGIEFIRGRQSTLRIYIDSDD-GITVDACADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LEVSSPG+DRPM + R+ G V + ++ +++K G I Sbjct: 60 VSAVLDVEDPITVAYNLEVSSPGLDRPMFTAEHYTRYLGENVTLVLRMAMQNRRKWQGII 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + E + ++ A L+ Sbjct: 120 KAVDGEMITVTVDGKDEV--------FALSNIQKANLVP 150 >gi|167401220|ref|ZP_02306720.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|259645220|sp|A7FMS4|RIMP_YERP3 RecName: Full=Ribosome maturation factor rimP gi|21957404|gb|AAM84274.1|AE013671_1 hypothetical protein y0686 [Yersinia pestis KIM 10] gi|45435296|gb|AAS60855.1| conserved hypothetical protein [Yersinia pestis biovar Microtus str. 91001] gi|152961108|gb|ABS48569.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP 31758] gi|167049245|gb|EDR60653.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. UG05-0454] Length = 154 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 74/154 (48%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I +E + + V I + + L+I+++ DD +T+ C ++S +S +L Sbjct: 8 LEQKLTEIISAPVEALGYELVGIEFIRGRQSTLRIYIDSDD-GITVDACADVSHQVSAVL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+DRPM + R+ G V + ++ +++K G I Sbjct: 67 DVEDPITVAYNLEVSSPGLDRPMFTAEHYTRYLGEEVTLVLRMAMQNRRKWQGIIKAVDG 126 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + E + ++ A L+ Sbjct: 127 EMITVTVDGKDEV--------FALSNIQKANLVP 152 >gi|229593531|ref|YP_001456060.2| hypothetical protein CKO_04571 [Citrobacter koseri ATCC BAA-895] Length = 150 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 74/154 (48%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I +E + + V I + + L+I+++ +D + + DC ++S +S +L Sbjct: 4 LEQKLTEMITAPVEALGYELVGIEFIRGRTSTLRIYIDSED-GINVDDCADVSHQVSAVL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+DRPM + R+ G V + ++ +++K G I Sbjct: 63 DVEDPITVAYNLEVSSPGLDRPMFTAEHYARFLGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + E + ++ A L+ Sbjct: 123 EMITVTVEGKDEV--------FALSNIQKANLVP 148 >gi|161353583|ref|NP_462201.2| hypothetical protein STM3288 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161486781|ref|NP_806884.2| hypothetical protein t3206 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|161501916|ref|NP_457670.2| hypothetical protein STY3469 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|161936211|ref|YP_152295.2| hypothetical protein SPA3156 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|162139540|ref|YP_218216.2| hypothetical protein SC3229 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194470097|ref|ZP_03076081.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194735644|ref|YP_002116238.1| hypothetical protein SeSA_A3478 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|198245424|ref|YP_002217261.1| hypothetical protein SeD_A3645 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200387280|ref|ZP_03213892.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205358508|ref|ZP_02656955.2| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205359739|ref|ZP_02831643.2| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|213052983|ref|ZP_03345861.1| hypothetical protein Salmoneentericaenterica_08732 [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425431|ref|ZP_03358181.1| hypothetical protein SentesTyphi_07043 [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213581726|ref|ZP_03363552.1| hypothetical protein SentesTyph_11179 [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213621933|ref|ZP_03374716.1| hypothetical protein SentesTyp_32176 [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213645860|ref|ZP_03375913.1| hypothetical protein SentesTy_00020 [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|228879515|ref|YP_001573258.2| hypothetical protein SARI_04336 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|229307088|ref|YP_001590259.2| hypothetical protein SPAB_04100 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|229597265|ref|YP_002047317.2| hypothetical protein SeHA_C3583 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|259586191|sp|B5FI15|RIMP_SALDC RecName: Full=Ribosome maturation factor rimP gi|259586195|sp|B4TWE0|RIMP_SALSV RecName: Full=Ribosome maturation factor rimP gi|194456461|gb|EDX45300.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711146|gb|ACF90367.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197939940|gb|ACH77273.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199604378|gb|EDZ02923.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205333894|gb|EDZ20658.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205343499|gb|EDZ30263.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|267995485|gb|ACY90370.1| hypothetical protein STM14_3971 [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|320087735|emb|CBY97499.1| UPF0090 protein yhbC [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322716286|gb|EFZ07857.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|326625039|gb|EGE31384.1| phage shock protein A [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 150 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 40/154 (25%), Positives = 75/154 (48%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I +E + + V I + + L+I+++ +D + + DC ++S +S +L Sbjct: 4 LEQKLTEMITAPVEALGYELVGIEFIRGRTSTLRIYIDSED-GINVDDCADVSHQVSAVL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+DRPM + R+ G VA + ++ +++K G I Sbjct: 63 DVEDPISVAYNLEVSSPGLDRPMFTADHYARFQGEEVALVLRMAVQNRRKWQGIIKAVDG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + E + ++ A L+ Sbjct: 123 EMITVTVEGKDEV--------FALSNIQKANLVP 148 >gi|153997275|ref|ZP_02022375.1| hypothetical protein YPE_3717 [Yersinia pestis CA88-4125] gi|229839150|ref|ZP_04459309.1| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896639|ref|ZP_04511806.1| conserved protein [Yersinia pestis Pestoides A] gi|229899714|ref|ZP_04514855.1| conserved protein [Yersinia pestis biovar Orientalis str. India 195] gi|229903876|ref|ZP_04518989.1| conserved protein [Yersinia pestis Nepal516] gi|238787592|ref|ZP_04631390.1| hypothetical protein yfred0001_21120 [Yersinia frederiksenii ATCC 33641] gi|238793020|ref|ZP_04636649.1| hypothetical protein yinte0001_33150 [Yersinia intermedia ATCC 29909] gi|34223130|sp|Q8ZBC0|RIMP_YERPE RecName: Full=Ribosome maturation factor rimP gi|81640534|sp|Q66F62|RIMP_YERPS RecName: Full=Ribosome maturation factor rimP gi|51588112|emb|CAH19718.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP 32953] gi|115349123|emb|CAL22086.1| conserved hypothetical protein [Yersinia pestis CO92] gi|149288912|gb|EDM38992.1| hypothetical protein YPE_3717 [Yersinia pestis CA88-4125] gi|229679646|gb|EEO75749.1| conserved protein [Yersinia pestis Nepal516] gi|229687206|gb|EEO79281.1| conserved protein [Yersinia pestis biovar Orientalis str. India 195] gi|229695516|gb|EEO85563.1| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700417|gb|EEO88449.1| conserved protein [Yersinia pestis Pestoides A] gi|238724379|gb|EEQ16021.1| hypothetical protein yfred0001_21120 [Yersinia frederiksenii ATCC 33641] gi|238727620|gb|EEQ19145.1| hypothetical protein yinte0001_33150 [Yersinia intermedia ATCC 29909] gi|320013701|gb|ADV97272.1| conserved protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 152 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 9/159 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ +I +E + + V I + + L+I+++ DD +T+ C ++S Sbjct: 1 MGLSTLEQKLTEIISAPVEALGYELVGIEFIRGRQSTLRIYIDSDD-GITVDACADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LEVSSPG+DRPM + R+ G V + ++ +++K G I Sbjct: 60 VSAVLDVEDPITVAYNLEVSSPGLDRPMFTAEHYTRYLGEEVTLVLRMAMQNRRKWQGII 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + E + ++ A L+ Sbjct: 120 KAVDGEMITVTVDGKDEV--------FALSNIQKANLVP 150 >gi|259907040|ref|YP_002647396.1| YhbC-like protein [Erwinia pyrifoliae Ep1/96] gi|292900767|ref|YP_003540136.1| hypothetical protein EAM_3073 [Erwinia amylovora ATCC 49946] gi|224962662|emb|CAX54117.1| YhbC-like protein [Erwinia pyrifoliae Ep1/96] gi|291200615|emb|CBJ47747.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946] gi|310766252|gb|ADP11202.1| YhbC-like protein [Erwinia sp. Ejp617] Length = 152 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 75/159 (47%), Gaps = 9/159 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ +I +E + + V I + + L+I+++ +D + + DC ++S Sbjct: 1 MGLSTLEQKLTELISAPVEALGYELVGIEFVRGRTSTLRIYIDSED-GINVDDCADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S ++DVE+ I Y LEVSSPG+DRPM + R+ G V+ + ++ +++K G I Sbjct: 60 VSAVMDVEDPITVAYNLEVSSPGLDRPMFTAEHYDRFTGEEVSLVLRMAVQNRRKWQGII 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E E + ++ A L+ Sbjct: 120 KSVEGEMITVAVEGNDEV--------FALSNIQKANLVP 150 >gi|311277857|ref|YP_003940088.1| hypothetical protein Entcl_0527 [Enterobacter cloacae SCF1] gi|308747052|gb|ADO46804.1| protein of unknown function DUF150 [Enterobacter cloacae SCF1] Length = 150 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 75/154 (48%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ ++ +E + F V I + + L+I+++ +D + + DC ++S +S ++ Sbjct: 4 LEQKLTEMLTAPVEALGFELVGIEFVRGRTSTLRIYIDSED-GINVDDCADVSHQVSAVM 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+DRPM + R+ G V+ + ++ +++K G I Sbjct: 63 DVEDPITVAYNLEVSSPGLDRPMFTAEHYTRFLGEEVSLVLRMAVQNRRKWQGIIKAVDG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + E + ++ A L+ Sbjct: 123 EMITVTVEGKDEV--------FALSNIQKANLVP 148 >gi|329295929|ref|ZP_08253265.1| hypothetical protein Pstas_03447 [Plautia stali symbiont] Length = 150 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 73/154 (47%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I +E + + V I + + L+I+++ ++ + + DC ++S +S ++ Sbjct: 4 LEQKLTELISAPVEALGYELVGIEFIRGRTSTLRIYIDSEE-GINVDDCADVSHQVSAVM 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG DRP+ + R+ G V+ + ++ +++K G I Sbjct: 63 DVEDPITVAYNLEVSSPGFDRPLFTAEHYARFAGEEVSLVLRMAVQNRRKWQGIIKSVEG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E E + ++ A L+ Sbjct: 123 EMITVTVEGNDEV--------FALSNIQKANLVP 148 >gi|260893512|ref|YP_003239609.1| protein of unknown function DUF150 [Ammonifex degensii KC4] gi|260865653|gb|ACX52759.1| protein of unknown function DUF150 [Ammonifex degensii KC4] Length = 161 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 40/161 (24%), Positives = 79/161 (49%), Gaps = 10/161 (6%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELS 73 + + +S + +P+ E + V + + +L++F+++ +TL DCE LS Sbjct: 1 MATGEKVVEVVSRLAEPLAERLGLELVDVEYKKEGGRWVLRVFIDKP-SGVTLDDCEALS 59 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 +A+ LDVE+ I Y LEVSSPG++RP+ + + F R+ G V + +++ G Sbjct: 60 EALGEALDVEDPIPHSYSLEVSSPGVERPLKKPAHFQRFVGREVRVSTLAPVEGQRRFTG 119 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ E G LE + + ++ + + + A L+ Sbjct: 120 VLLAADEEGIRLETDGK--------ELDLPYRLIAKANLVF 152 >gi|212709947|ref|ZP_03318075.1| hypothetical protein PROVALCAL_00997 [Providencia alcalifaciens DSM 30120] gi|212687459|gb|EEB46987.1| hypothetical protein PROVALCAL_00997 [Providencia alcalifaciens DSM 30120] Length = 183 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 77/154 (50%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ ++ +E + F V + + + L+IF++ ++ +T+ DC ++S +S +L Sbjct: 37 LEQKLTEMVSAPVEALGFEFVGLEFVRGRTSTLRIFIDSEE-GITVDDCADVSHQVSAVL 95 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LE+SSPG++RP+ + + R+ G VA + ++ ++++ G I Sbjct: 96 DVEDPISVIYNLEISSPGMERPLFTIAHYERFMGEEVALSLRIAMQNRRRWQGIIKAVDG 155 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + E + ++ A L+ Sbjct: 156 EMITVTVDGKDEV--------FALGNIQKANLVP 181 >gi|259585768|sp|A4WEY5|RIMP_ENT38 RecName: Full=Ribosome maturation factor rimP gi|145320118|gb|ABP62265.1| protein of unknown function DUF150 [Enterobacter sp. 638] Length = 160 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 74/154 (48%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I+ +E + + V I + + L+I+++ +D + + DC ++S +S +L Sbjct: 14 LEQKLTEMIKAPVEALGYELVGIEFIRSRTSTLRIYIDSED-GINVDDCADVSHQVSAVL 72 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+ RPM + + G VA + ++ +++K G I Sbjct: 73 DVEDPITVAYNLEVSSPGLHRPMFTAEHYTHYIGEEVAVVLRMAVQNRRKWQGVIKAVDG 132 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + E + ++ A L+ Sbjct: 133 EMITVTVEGKDEV--------FALSNIQKANLVP 158 >gi|290511547|ref|ZP_06550916.1| hypothetical protein HMPREF0485_03317 [Klebsiella sp. 1_1_55] gi|289776540|gb|EFD84539.1| hypothetical protein HMPREF0485_03317 [Klebsiella sp. 1_1_55] Length = 154 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 75/154 (48%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ ++ +E + F V I + + L+I+++ +D + + DC ++S +S ++ Sbjct: 8 LEQKLTEMLTAPVEALGFELVGIEFIRGRTSTLRIYIDSED-GINVDDCADVSHQVSAVM 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+DRPM + R+ G VA + ++ +++K G I Sbjct: 67 DVEDPITVAYNLEVSSPGLDRPMFTAEHYQRFTGEEVALVLRMAVQNRRKWQGIIKAVDG 126 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + E + ++ A L+ Sbjct: 127 EMITVTVEGKDEV--------FALSNIQKANLVP 152 >gi|28899232|ref|NP_798837.1| hypothetical protein VP2458 [Vibrio parahaemolyticus RIMD 2210633] gi|153838301|ref|ZP_01990968.1| protein YhbC [Vibrio parahaemolyticus AQ3810] gi|260362205|ref|ZP_05775189.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030] gi|260879073|ref|ZP_05891428.1| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034] gi|260897744|ref|ZP_05906240.1| conserved hypothetical protein [Vibrio parahaemolyticus Peru-466] gi|260900800|ref|ZP_05909195.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037] gi|34223108|sp|Q87M00|RIMP_VIBPA RecName: Full=Ribosome maturation factor rimP gi|28807456|dbj|BAC60721.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|149748290|gb|EDM59149.1| protein YhbC [Vibrio parahaemolyticus AQ3810] gi|308088965|gb|EFO38660.1| conserved hypothetical protein [Vibrio parahaemolyticus Peru-466] gi|308089555|gb|EFO39250.1| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034] gi|308108208|gb|EFO45748.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037] gi|308111471|gb|EFO49011.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030] gi|328474232|gb|EGF45037.1| ribosome maturation protein RimP [Vibrio parahaemolyticus 10329] Length = 151 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 79/157 (50%), Gaps = 10/157 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ +++ +E + V + + + L+I+++ + + + DC E+S +S Sbjct: 2 TGLERQLTEMLEAPVEASGYELVGLEFIRAGAHSTLRIYIDH-ENGINVDDCAEVSHQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ +++K G I G Sbjct: 61 AVLDVEDPISVAYSLEVSSPGLERPLFKAAHYEQFIGHEVSIVLKMAVANRRKWKGIIHG 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + E + ++ A LI Sbjct: 121 VDGETVTVTVEGQQE--------EFALSNISKANLIP 149 >gi|288933402|ref|YP_003437461.1| hypothetical protein Kvar_0519 [Klebsiella variicola At-22] gi|288888131|gb|ADC56449.1| protein of unknown function DUF150 [Klebsiella variicola At-22] Length = 152 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 76/159 (47%), Gaps = 9/159 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ ++ +E + F V I + + L+I+++ +D + + DC ++S Sbjct: 1 MGLSTLEQKLTEMLTAPVEALGFELVGIEFIRGRTSTLRIYIDSED-GINVDDCADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S ++DVE+ I Y LEVSSPG+DRPM + R+ G VA + ++ +++K G I Sbjct: 60 VSAVMDVEDPITVAYNLEVSSPGLDRPMFTAEHYQRFTGEEVALVLRMAVQNRRKWQGII 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + E + ++ A L+ Sbjct: 120 KAVDGEMITVTVEGKDEV--------FALSNIQKANLVP 150 >gi|108806046|ref|YP_649962.1| hypothetical protein YPA_0048 [Yersinia pestis Antiqua] gi|108813402|ref|YP_649169.1| hypothetical protein YPN_3242 [Yersinia pestis Nepal516] gi|145600794|ref|YP_001164870.1| hypothetical protein YPDSF_3547 [Yersinia pestis Pestoides F] gi|161484876|ref|NP_668023.2| hypothetical protein y0686 [Yersinia pestis KIM 10] gi|161511440|ref|NP_991978.2| hypothetical protein YP_0585 [Yersinia pestis biovar Microtus str. 91001] gi|161760591|ref|YP_069021.2| hypothetical protein YPTB0478 [Yersinia pseudotuberculosis IP 32953] gi|162419022|ref|YP_001608284.1| hypothetical protein YpAngola_A3991 [Yersinia pestis Angola] gi|166010175|ref|ZP_02231073.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. E1979001] gi|167420580|ref|ZP_02312333.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423588|ref|ZP_02315341.1| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170025947|ref|YP_001722452.1| hypothetical protein YPK_3732 [Yersinia pseudotuberculosis YPIII] gi|186893839|ref|YP_001870951.1| hypothetical protein YPTS_0508 [Yersinia pseudotuberculosis PB1/+] gi|218930512|ref|YP_002348387.1| hypothetical protein YPO3498 [Yersinia pestis CO92] gi|229294897|ref|YP_001402552.2| hypothetical protein YpsIP31758_3598 [Yersinia pseudotuberculosis IP 31758] gi|270489134|ref|ZP_06206208.1| conserved hypothetical protein [Yersinia pestis KIM D27] gi|294505369|ref|YP_003569431.1| hypothetical protein YPZ3_3260 [Yersinia pestis Z176003] gi|122383879|sp|Q1CC05|RIMP_YERPA RecName: Full=Ribosome maturation factor rimP gi|122384216|sp|Q1CEL1|RIMP_YERPN RecName: Full=Ribosome maturation factor rimP gi|259511439|sp|A4TRI5|RIMP_YERPP RecName: Full=Ribosome maturation factor rimP gi|259511440|sp|B1JLY2|RIMP_YERPY RecName: Full=Ribosome maturation factor rimP gi|259645221|sp|B2K2Q3|RIMP_YERPB RecName: Full=Ribosome maturation factor rimP gi|259645222|sp|A9R5A1|RIMP_YERPG RecName: Full=Ribosome maturation factor rimP gi|108777050|gb|ABG19569.1| hypothetical protein YPN_3242 [Yersinia pestis Nepal516] gi|108777959|gb|ABG12017.1| hypothetical protein YPA_0048 [Yersinia pestis Antiqua] gi|145212490|gb|ABP41897.1| hypothetical protein YPDSF_3547 [Yersinia pestis Pestoides F] gi|162351837|gb|ABX85785.1| conserved hypothetical protein [Yersinia pestis Angola] gi|165991082|gb|EDR43383.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166961386|gb|EDR57407.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167057758|gb|EDR67504.1| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752481|gb|ACA69999.1| protein of unknown function DUF150 [Yersinia pseudotuberculosis YPIII] gi|186696865|gb|ACC87494.1| protein of unknown function DUF150 [Yersinia pseudotuberculosis PB1/+] gi|262363435|gb|ACY60156.1| hypothetical protein YPD4_3252 [Yersinia pestis D106004] gi|262367190|gb|ACY63747.1| hypothetical protein YPD8_3075 [Yersinia pestis D182038] gi|270337638|gb|EFA48415.1| conserved hypothetical protein [Yersinia pestis KIM D27] gi|294355828|gb|ADE66169.1| hypothetical protein YPZ3_3260 [Yersinia pestis Z176003] Length = 150 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 74/154 (48%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I +E + + V I + + L+I+++ DD +T+ C ++S +S +L Sbjct: 4 LEQKLTEIISAPVEALGYELVGIEFIRGRQSTLRIYIDSDD-GITVDACADVSHQVSAVL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+DRPM + R+ G V + ++ +++K G I Sbjct: 63 DVEDPITVAYNLEVSSPGLDRPMFTAEHYTRYLGEEVTLVLRMAMQNRRKWQGIIKAVDG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + E + ++ A L+ Sbjct: 123 EMITVTVDGKDEV--------FALSNIQKANLVP 148 >gi|259586205|sp|Q2NW25|RIMP_SODGM RecName: Full=Ribosome maturation factor rimP Length = 152 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 75/159 (47%), Gaps = 9/159 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 L ++ +I +E + F V I + + L+I++ D +T+ DC ++S Sbjct: 1 MALSTLEQKLTEMITAPVEALGFELVGIEFIRGRQSTLRIYI-NSDEGITVDDCADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LEVSSPG+DRP+ + + ++ G V+ + ++ +++K G I Sbjct: 60 VSAVLDVEDPISVAYSLEVSSPGLDRPLFTAAHYRQFIGSDVSVVLRIAVQNRRKWQGII 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + E + ++ A L+ Sbjct: 120 KAVDGEMITVTVDGKDEV--------FALQNIQKANLVP 150 >gi|292486835|ref|YP_003529705.1| hypothetical protein EAMY_0347 [Erwinia amylovora CFBP1430] gi|283476836|emb|CAY72674.1| UPF0090 protein yhbC [Erwinia pyrifoliae DSM 12163] gi|291552252|emb|CBA19289.1| UPF0090 protein yhbC [Erwinia amylovora CFBP1430] gi|312170903|emb|CBX79162.1| UPF0090 protein yhbC [Erwinia amylovora ATCC BAA-2158] Length = 150 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 74/154 (48%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I +E + + V I + + L+I+++ +D + + DC ++S +S ++ Sbjct: 4 LEQKLTELISAPVEALGYELVGIEFVRGRTSTLRIYIDSED-GINVDDCADVSHQVSAVM 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+DRPM + R+ G V+ + ++ +++K G I Sbjct: 63 DVEDPITVAYNLEVSSPGLDRPMFTAEHYDRFTGEEVSLVLRMAVQNRRKWQGIIKSVEG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E E + ++ A L+ Sbjct: 123 EMITVAVEGNDEV--------FALSNIQKANLVP 148 >gi|90409005|ref|ZP_01217135.1| hypothetical protein PCNPT3_10746 [Psychromonas sp. CNPT3] gi|90309890|gb|EAS38045.1| hypothetical protein PCNPT3_10746 [Psychromonas sp. CNPT3] Length = 152 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 74/156 (47%), Gaps = 10/156 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 L ++ + P +E++ + V I K+ +L+++++ + + + DC +S+ IS Sbjct: 3 SLEQRLTDMFTPSVEDLGYELVGIEYTRAGKHSILRVYID-QEAGILVDDCAAVSRQISA 61 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 ++DVE+ I Y LEVSSPG++RP+ + + + G V ++ + ++++ G I Sbjct: 62 LMDVEDPITNEYTLEVSSPGLERPLFSATHYQAFVGSKVKIQLRMPIQNRRRWKGMIESV 121 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + E + ++ A ++ Sbjct: 122 EGEIISVNVDGTLE--------RFALSNIQKANIVP 149 >gi|269103409|ref|ZP_06156106.1| UPF0090 domain-containing protein [Photobacterium damselae subsp. damselae CIP 102761] gi|268163307|gb|EEZ41803.1| UPF0090 domain-containing protein [Photobacterium damselae subsp. damselae CIP 102761] Length = 151 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 81/157 (51%), Gaps = 10/157 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 L ++ +++P + + + V + + + L+IF+++ + + + DC E+S+ +S Sbjct: 2 TALETQLTEMLEPSVAALGYELVGLEFIRAGEHSTLRIFIDK-ENGINVEDCAEVSRQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++DVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ G+++K G I+ Sbjct: 61 AVMDVEDPITVAYNLEVSSPGLERPLFKAAHYEQFIGHEVSLVLKMAMGNRRKWKGDIVA 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L + E + ++ A L+ Sbjct: 121 VDGELVTLNVDGNEEC--------FALSNISKANLVP 149 >gi|282600045|ref|ZP_05972807.2| hypothetical protein PROVRUST_06459 [Providencia rustigianii DSM 4541] gi|282566854|gb|EFB72389.1| hypothetical protein PROVRUST_06459 [Providencia rustigianii DSM 4541] Length = 185 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 77/154 (50%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ ++ +E + F V + + + L+IF++ ++ +T+ DC ++S +S +L Sbjct: 39 LEQKLTEMVSAPVEALGFEFVGLEFVRGRTSTLRIFIDSEE-GITVDDCADVSHQVSAVL 97 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG++RP+ + + R+ G VA + ++ ++++ G I Sbjct: 98 DVEDPISVIYNLEVSSPGMERPLFTIAHYERFMGEEVALTLRIAMQNRRRWQGIIKAVDG 157 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + E + ++ A L+ Sbjct: 158 EMITVTVDGKDEV--------FALGNIQKANLVP 183 >gi|238750124|ref|ZP_04611627.1| hypothetical protein yrohd0001_7050 [Yersinia rohdei ATCC 43380] gi|238761766|ref|ZP_04622740.1| hypothetical protein ykris0001_12910 [Yersinia kristensenii ATCC 33638] gi|332160077|ref|YP_004296654.1| hypothetical protein YE105_C0453 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|167012934|sp|A1JIW7|RIMP_YERE8 RecName: Full=Ribosome maturation factor rimP gi|122087772|emb|CAL10558.1| conserved hypothetical protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|238699880|gb|EEP92623.1| hypothetical protein ykris0001_12910 [Yersinia kristensenii ATCC 33638] gi|238711668|gb|EEQ03883.1| hypothetical protein yrohd0001_7050 [Yersinia rohdei ATCC 43380] gi|325664307|gb|ADZ40951.1| hypothetical protein YE105_C0453 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 152 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 75/159 (47%), Gaps = 9/159 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ +I +E + + V I + + L+I+++ DD +T+ C ++S Sbjct: 1 MGLSTLEQKLTEIISAPVEALGYELVGIEFIRGRQSTLRIYIDSDD-GITVDACADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LEVSSPG++RPM + R+ G V + ++ +++K G I Sbjct: 60 VSAVLDVEDPITVAYNLEVSSPGLERPMFTAEHYTRYLGEEVTLVLRMAMQNRRKWQGII 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + E + ++ A L+ Sbjct: 120 KAVDGEMITVTVDGKDEV--------FALSNIQKANLVP 150 >gi|227357077|ref|ZP_03841447.1| YhbC family protein [Proteus mirabilis ATCC 29906] gi|227162769|gb|EEI47732.1| YhbC family protein [Proteus mirabilis ATCC 29906] Length = 170 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 80/154 (51%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L +++++ +E + F V + + + L+I+++ ++ +T+ DC ++S +S +L Sbjct: 24 LEQKLTAMVSAPVEALGFEFVGLEFIRGRVSTLRIYIDSEE-GITVDDCADVSHQVSAVL 82 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I+ Y LE+SSPG++RP+ + + ++ G VA + ++ +++K G I + Sbjct: 83 DVEDPIQTFYNLEISSPGLERPLFTTTHYEQFIGEEVAVVLRIAMQNRRKWQGIIKSVAG 142 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + E + ++ A L+ Sbjct: 143 EMITVTVDGKDEV--------FALSNIQKANLVP 168 >gi|260596200|ref|YP_003208771.1| ribosome maturation protein RimP [Cronobacter turicensis z3032] gi|260215377|emb|CBA27399.1| UPF0090 protein yhbC [Cronobacter turicensis z3032] Length = 150 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 75/154 (48%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I +E + + V I + + L+I+++ +D +T+ DC ++S +S +L Sbjct: 4 LEQKLTEMITAPVEALGYELVGIEFIRGRTSTLRIYIDSED-GITVDDCADVSHQVSAVL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ + Y LEVSSPG+DRP+ + R+ G V + ++ +++K G I Sbjct: 63 DVEDPVTVAYNLEVSSPGLDRPLFTAEHYARYTGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + E + ++ A L+ Sbjct: 123 EMITVAVDGKDEV--------FALSNIQRANLVP 148 >gi|259585707|sp|Q0A795|RIMP_ALHEH RecName: Full=Ribosome maturation factor rimP Length = 152 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 46/154 (29%), Positives = 79/154 (51%), Gaps = 9/154 (5%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + ++I P++ M + V I LL+I+++ D +TL DCE S+ IS +L Sbjct: 5 EDTLYALIDPLLTGMGYELVGIEYGGPAGKRLLRIYIDSPD-GITLDDCETCSRQISAVL 63 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I G Y LE+SSPG+DRP+ + SD+ R+ G + + +++ G + G + Sbjct: 64 DVEDPIPGEYTLEISSPGLDRPIFKASDYDRFAGEQIKIRLSAPWEGRRRFKGVLAGLGD 123 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G + + ++ I D + ARLI+ Sbjct: 124 EGVRV-------VEAQGDEVQIPLDLIEKARLIL 150 >gi|254787151|ref|YP_003074580.1| hypothetical protein TERTU_3219 [Teredinibacter turnerae T7901] gi|259645124|sp|C5BPW1|RIMP_TERTT RecName: Full=Ribosome maturation factor rimP gi|237686402|gb|ACR13666.1| conserved hypothetical protein [Teredinibacter turnerae T7901] Length = 152 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 42/152 (27%), Positives = 80/152 (52%), Gaps = 9/152 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 + +I PV+E + + + + +L+IF+++ + + DCE++S+ +S +LDV Sbjct: 7 QLEELIAPVVESLECELWGLEYSVQGRRSMLRIFIDKQPDGVLVEDCEKVSRQVSSVLDV 66 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ I G Y LEVSSPG+DRP+ + + F + GH VA + ++ ++K G + G + Sbjct: 67 EDPISGEYTLEVSSPGMDRPLFKLAHFELYVGHRVALRLRVAFEGRRKFQGLLKGIEDGE 126 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 LE E + + F+ + A ++ Sbjct: 127 IVLEV--------GEEEYLLPFELIDKANVVP 150 >gi|323162864|gb|EFZ48699.1| hypothetical protein ECE128010_0824 [Escherichia coli E128010] Length = 150 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 74/154 (48%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I +E + F V I + + L+I+++ +D + + DC ++S +S +L Sbjct: 4 LEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSED-GINVDDCADVSHQVSAVL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+DRP+ + R+ G V + ++ +++K G I Sbjct: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKCQGVIKAVDG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + E + ++ A L+ Sbjct: 123 EMITVTVEGKDEV--------FALSNIQKANLVP 148 >gi|269966858|ref|ZP_06180931.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269828525|gb|EEZ82786.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 151 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 77/157 (49%), Gaps = 10/157 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ ++ + + V + + + L+I+++ + + + DC E+S +S Sbjct: 2 TGLERQLTEMLDAPVAASGYELVGLEFIRAGAHSTLRIYIDH-ENGINVDDCAEVSHQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ +++K G I G Sbjct: 61 AVLDVEDPISVAYSLEVSSPGLERPLFKAAHYEQFIGHEVSIVLKMAVANRRKWKGIIHG 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + E + ++ A LI Sbjct: 121 VDGETVTITVDGQQE--------EFALSNISKANLIP 149 >gi|206577891|ref|YP_002236419.1| hypothetical protein KPK_0544 [Klebsiella pneumoniae 342] gi|229269511|ref|YP_001337240.2| hypothetical protein KPN_03578 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|259585803|sp|B5XSX2|RIMP_KLEP3 RecName: Full=Ribosome maturation factor rimP gi|259585806|sp|A6TEI9|RIMP_KLEP7 RecName: Full=Ribosome maturation factor rimP gi|206566949|gb|ACI08725.1| conserved hypothetical protein [Klebsiella pneumoniae 342] Length = 150 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 75/154 (48%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ ++ +E + F V I + + L+I+++ +D + + DC ++S +S ++ Sbjct: 4 LEQKLTEMLTAPVEALGFELVGIEFIRGRTSTLRIYIDSED-GINVDDCADVSHQVSAVM 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+DRPM + R+ G VA + ++ +++K G I Sbjct: 63 DVEDPITVAYNLEVSSPGLDRPMFTAEHYQRFTGEEVALVLRMAVQNRRKWQGIIKAVDG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + E + ++ A L+ Sbjct: 123 EMITVTVEGKDEV--------FALSNIQKANLVP 148 >gi|238896677|ref|YP_002921422.1| hypothetical protein KP1_4889 [Klebsiella pneumoniae NTUH-K2044] gi|238549004|dbj|BAH65355.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 154 Score = 138 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 74/154 (48%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ ++ +E + F V I + + L+I+++ +D + + DC ++S +S ++ Sbjct: 8 LEQKLTEMLTAPVEALGFELVGIEFIRGRTSTLRIYIDSED-GINVDDCADVSHQVSAVM 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSS G+DRPM + R+ G VA + ++ +++K G I Sbjct: 67 DVEDPITVAYNLEVSSLGLDRPMFTAEHYQRFTGEEVALVLRMAVQNRRKWQGIIKAVDG 126 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + E + ++ A L+ Sbjct: 127 EMITVTVEGKDEV--------FALSNIQKANLVP 152 >gi|94501386|ref|ZP_01307906.1| hypothetical protein RED65_04750 [Oceanobacter sp. RED65] gi|94426499|gb|EAT11487.1| hypothetical protein RED65_04750 [Oceanobacter sp. RED65] Length = 175 Score = 138 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 80/157 (50%), Gaps = 11/157 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + ++QPV+E M + + + + K+ LL+IF++ + + + DC +S+ +S ++ Sbjct: 24 DQQLVELLQPVVEAMGYEFWGLEYIAKGKDSLLRIFIDG-ENGVNVDDCAAVSRQVSGVM 82 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+DRP+ F R+ G V ++ + ++K GK++G + Sbjct: 83 DVEDPITSEYNLEVSSPGLDRPLFTLEHFERYVGEFVDIKLRYAFEGRRKFKGKLVGIED 142 Query: 141 -TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 + + + + DS+ A LI D Sbjct: 143 GEDIVVHVDN--------HEYLLPIDSIDKANLIYRD 171 >gi|229576801|ref|YP_001004802.2| hypothetical protein YE0432 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318607363|emb|CBY28861.1| clustered with transcription termination protein NusA [Yersinia enterocolitica subsp. palearctica Y11] gi|330862030|emb|CBX72197.1| UPF0090 protein YE0432 [Yersinia enterocolitica W22703] Length = 150 Score = 138 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 74/154 (48%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I +E + + V I + + L+I+++ DD +T+ C ++S +S +L Sbjct: 4 LEQKLTEIISAPVEALGYELVGIEFIRGRQSTLRIYIDSDD-GITVDACADVSHQVSAVL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG++RPM + R+ G V + ++ +++K G I Sbjct: 63 DVEDPITVAYNLEVSSPGLERPMFTAEHYTRYLGEEVTLVLRMAMQNRRKWQGIIKAVDG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + E + ++ A L+ Sbjct: 123 EMITVTVDGKDEV--------FALSNIQKANLVP 148 >gi|162382799|ref|YP_454055.2| hypothetical protein SG0375 [Sodalis glossinidius str. 'morsitans'] Length = 150 Score = 138 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 75/154 (48%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I +E + F V I + + L+I++ D +T+ DC ++S +S +L Sbjct: 4 LEQKLTEMITAPVEALGFELVGIEFIRGRQSTLRIYI-NSDEGITVDDCADVSHQVSAVL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+DRP+ + + ++ G V+ + ++ +++K G I Sbjct: 63 DVEDPISVAYSLEVSSPGLDRPLFTAAHYRQFIGSDVSVVLRIAVQNRRKWQGIIKAVDG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + E + ++ A L+ Sbjct: 123 EMITVTVDGKDEV--------FALQNIQKANLVP 148 >gi|317493624|ref|ZP_07952045.1| yhbC protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918567|gb|EFV39905.1| yhbC protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 152 Score = 138 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 77/159 (48%), Gaps = 9/159 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ +I +E + F V I + + L+I+++ D+ + + DC ++S Sbjct: 1 MGLSTLEQKLTEMISAPVEALGFELVGIEFIRSHHSTLRIYIDSDE-GINVDDCADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LEVSSPG+DRPM ++R+ G V+ + ++ +++K G I Sbjct: 60 VSAVLDVEDPITVAYNLEVSSPGLDRPMFTADHYVRFMGEEVSLVLRMAVQNRRKWQGII 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + E + ++ A L+ Sbjct: 120 KAVEGEMITVTVDGKDEV--------FALSNIQKANLVP 150 >gi|238755154|ref|ZP_04616500.1| hypothetical protein yruck0001_25670 [Yersinia ruckeri ATCC 29473] gi|238706601|gb|EEP98972.1| hypothetical protein yruck0001_25670 [Yersinia ruckeri ATCC 29473] Length = 152 Score = 138 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 75/159 (47%), Gaps = 9/159 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ +I +E + + V I + + L+I+++ +D +T+ C ++S Sbjct: 1 MGLSTLEQKLTEIISAPVEALGYELVGIEFIRGRQSTLRIYIDSED-GITVDACADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LEVSSPG+DRPM + R+ G V + ++ +++K G I Sbjct: 60 VSAVLDVEDPITVAYNLEVSSPGLDRPMFTAEHYARYLGETVILVLRMAMQNRRKWQGII 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + E + ++ A L+ Sbjct: 120 KAVDGEMITVTVDGKDEV--------FALSNIQKANLVP 150 >gi|197335158|ref|YP_002155239.1| protein VV1_1694 [Vibrio fischeri MJ11] gi|226707621|sp|B5FA77|RIMP_VIBFM RecName: Full=Ribosome maturation factor rimP gi|197316648|gb|ACH66095.1| protein VV1_1694 [Vibrio fischeri MJ11] Length = 151 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 78/157 (49%), Gaps = 10/157 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ +++ + + + V + + + L++F++ + + + DC E S+ IS Sbjct: 2 TGLERQLTEMLEAPVGALGYELVGLEFVRAGEHSTLRVFIDH-ENGIFVEDCAEASRQIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++DVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + + +++K G I+ Sbjct: 61 AVMDVEDPITVAYNLEVSSPGLERPLFKAAHYQQFVGHEVSLVLKMPMNNRRKWKGDILE 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + E + ++ A L+ Sbjct: 121 VNGEIVTVTVDGNNE--------EFALSNISKANLVP 149 >gi|91208407|sp|Q5WT34|RIMP_LEGPL RecName: Full=Ribosome maturation factor rimP Length = 147 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 80/153 (52%), Gaps = 10/153 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + D+ +++P+I+ M + + K+ LL+I++++ D + + DC+E+S+ +S + Sbjct: 2 INDDLIVLLEPIIKNMGYELWGCEYLSQGKHSLLRIYIDKPD-GIGIDDCQEVSKQVSAM 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I GHY LE+SSPGI RP+ + R+ G+ + + K+KL G I+ S Sbjct: 61 LDVEDPIPGHYSLEISSPGIPRPLFSIWQYQRYLGYEIHVKTFKPVNGKRKLSGIIVSAS 120 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 L+ + I +++ A L Sbjct: 121 GDTIVLDINNEHQ--------EILLSNIVKANL 145 >gi|119944577|ref|YP_942257.1| hypothetical protein Ping_0815 [Psychromonas ingrahamii 37] gi|167016814|sp|A1ST43|RIMP_PSYIN RecName: Full=Ribosome maturation factor rimP gi|119863181|gb|ABM02658.1| hypothetical protein DUF150 [Psychromonas ingrahamii 37] Length = 153 Score = 137 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 80/156 (51%), Gaps = 10/156 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 L ++ ++ P +E++ + V + + K+ L++++++D+ + + DC +S+ +S Sbjct: 3 SLEERLTEMLAPSVEDLGYELVGVEYIRAGKHSTLRVYIDQDE-GILVDDCAAVSRQVSA 61 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 I+DVE+ I Y LEVSSPG++RP+ + + + G V ++ + ++++ G I+ Sbjct: 62 IMDVEDPITNEYSLEVSSPGMNRPLFKAEHYQIFAGEEVKIQLRMPIQNRRRWKGVIVSA 121 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + L E R E S ++ A ++ Sbjct: 122 EDEIICLNIEGREE--------RFSLSNIQKANIVP 149 >gi|254419012|ref|ZP_05032736.1| conserved hypothetical protein [Brevundimonas sp. BAL3] gi|196185189|gb|EDX80165.1| conserved hypothetical protein [Brevundimonas sp. BAL3] Length = 199 Score = 137 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 10/180 (5%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERD-DGNMTLRDCEEL 72 + + +I P+ E + V++ L K LQI ER D ++++ C +L Sbjct: 1 MRARTAQDRQLLELIDPIAESLGLEVVRVRLMTGSKRQRLQIMAERPSDHDISVEQCAKL 60 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+A+S + D + I G Y LEVSSPGIDRP+ R DF + G E +++ Sbjct: 61 SRAVSEVFDAADPIAGEYMLEVSSPGIDRPLTRPLDFDLFEGEEARLETDRMIEGRKRFK 120 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR--ASLNNYGSYA 190 G + G + ++ + + I FD L A+L++TD L++ A++ Sbjct: 121 GVLAGYEDGNVLIDLDG------EDETALIPFDWLSDAKLVLTDALMKRGAAIRAARGEP 174 >gi|138894779|ref|YP_001125232.1| hypothetical protein GTNG_1113 [Geobacillus thermodenitrificans NG80-2] gi|134266292|gb|ABO66487.1| Conserved hypothetical protein [Geobacillus thermodenitrificans NG80-2] Length = 170 Score = 137 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 44/163 (26%), Positives = 80/163 (49%), Gaps = 6/163 (3%) Query: 13 PRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEE 71 R + + ++ P++ EM V I ++ KN L++F++ DD + + C Sbjct: 10 RRKTMSKKVTETVEQLVTPILNEMGLELVDIEYVKEGKNWFLRVFIDSDD-GVDIEQCGV 68 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+ +S LD + I +Y LEVSSPG +RP+ + DF++ G V + +++ Sbjct: 69 VSEKLSEKLDEVDPIPHNYFLEVSSPGAERPLKNEKDFVKAIGKHVYIKTYEPIAGEKQF 128 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G++ T L + RG + +AI ++ + SARL V Sbjct: 129 EGELTAFDGTTVTLSVKDRG----RQKTVAIPYEKVASARLAV 167 >gi|148361088|ref|YP_001252295.1| hypothetical protein LPC_3059 [Legionella pneumophila str. Corby] gi|148282861|gb|ABQ56949.1| conserved hypothetical protein; DUF150 [Legionella pneumophila str. Corby] Length = 140 Score = 137 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 43/146 (29%), Positives = 78/146 (53%), Gaps = 10/146 (6%) Query: 28 VIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 +++P+I+ M + + K+ LL+I++++ D + + DC+E+S+ +S +LDVE+ I Sbjct: 2 LLEPIIKNMGYELWGCEYLSQGKHSLLRIYIDKPD-GIGIDDCQEVSKQVSAMLDVEDPI 60 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE 146 GHY LE+SSPGI RP+ + R+ G+ + + K+KL G I+ SE L+ Sbjct: 61 PGHYSLEISSPGIPRPLFSIWQYQRYLGYEIHVKTFKPVNGKRKLSGIIVSASEDTIVLD 120 Query: 147 KEKRGEKDMNELQIAISFDSLLSARL 172 + I +++ A L Sbjct: 121 INNEHQ--------EILLSNIVKANL 138 >gi|227112573|ref|ZP_03826229.1| hypothetical protein PcarbP_06402 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227327825|ref|ZP_03831849.1| hypothetical protein PcarcW_11031 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 150 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 76/154 (49%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I + + + V I + + L+I+++ +D +T+ DC ++S +S +L Sbjct: 4 LEQKLTEMISAPVAALGYELVGIEFIRSRQSTLRIYIDSED-GITVDDCADVSHQVSAVL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG++RP+ + +L + G V + ++ +++K +G I Sbjct: 63 DVEDPITVAYNLEVSSPGLERPLFTAAHYLHFVGEEVTVVLRMAVQNRRKWLGVIKAVDG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + E + ++ A L+ Sbjct: 123 EMITITVEGKDEV--------FALSNIQKANLVP 148 >gi|161501882|ref|YP_048824.2| hypothetical protein ECA0710 [Pectobacterium atrosepticum SCRI1043] Length = 150 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 77/154 (50%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I + + + V I + + L+I+++ +D +T+ DC ++S +S +L Sbjct: 4 LEQKLTEMISAPVAALGYELVGIEFIRSRQSTLRIYIDSED-GITVDDCADVSHQVSAVL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG++RP+ + +L + G VA + ++ +++K +G I Sbjct: 63 DVEDPITVAYNLEVSSPGLERPLFTAAHYLHFVGEEVAVVLRMAVQNRRKWLGVIKAVDG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + E + ++ A L+ Sbjct: 123 EMITITVEGKDEV--------FALSNIQKANLVP 148 >gi|262274885|ref|ZP_06052696.1| UPF0090 domain-containing protein [Grimontia hollisae CIP 101886] gi|262221448|gb|EEY72762.1| UPF0090 domain-containing protein [Grimontia hollisae CIP 101886] Length = 151 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 83/157 (52%), Gaps = 10/157 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL + ++++ ++ + + V + + ++ L+I+++ + +T+ DC E+S+ +S Sbjct: 2 TGLEKQLLALLEAPVKALDYELVGLEFVRAGQHSTLRIYIDH-ENGITVEDCAEVSRQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++DVE+ I Y LEVSSPG++RP+ + + R+ GH V + ++ +++K G+I+ Sbjct: 61 AVMDVEDPITVAYNLEVSSPGLERPLFKAEHYQRFVGHEVTIVLKMAMQNRRKWKGEILS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ + E A + ++ A L+ Sbjct: 121 VEGETVTIKVDGNEE--------AFALSNIAKANLVP 149 >gi|59711091|ref|YP_203867.1| hypothetical protein VF_0484 [Vibrio fischeri ES114] gi|75354545|sp|Q5E7L7|RIMP_VIBF1 RecName: Full=Ribosome maturation factor rimP gi|59479192|gb|AAW84979.1| YhbC-like protein [Vibrio fischeri ES114] Length = 151 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 78/157 (49%), Gaps = 10/157 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ +++ + + + V + + + L++F++ + + + DC E S+ IS Sbjct: 2 TGLERQLTEMLEAPVGALGYELVGLEFVRAGEHSTLRVFIDH-ENGIFVEDCAEASRQIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++DVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + + +++K G I+ Sbjct: 61 AVMDVEDPITVAYNLEVSSPGLERPLFKAAHYQQFVGHEVSLVLKMPMNNRRKWKGDILE 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + E + ++ A L+ Sbjct: 121 INGEIVTVTVDGNNE--------EFALSNISKANLVP 149 >gi|307546729|ref|YP_003899208.1| hypothetical protein HELO_4139 [Halomonas elongata DSM 2581] gi|307218753|emb|CBV44023.1| K09748 hypothetical protein [Halomonas elongata DSM 2581] Length = 153 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 45/154 (29%), Positives = 80/154 (51%), Gaps = 10/154 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++++I+PV+ M F I + K+ L IF++ + + + DC ++S+ +S +LDVE Sbjct: 8 LNALIEPVVTAMGFELWGIDYLSQGKHSRLVIFIDH-EQGVGVDDCADVSRQVSAVLDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I G YRLEVSSPG+DRP+ F R+ GH VA ++ ++K G + G Sbjct: 67 DPIAGEYRLEVSSPGMDRPLFTLEQFERYAGHTVAVKLRAPFDGRRKFQGLLAGIEGDEV 126 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 L+ + + +S+ AR++ + Sbjct: 127 LLQLDGE--------EYCFPIESIDQARIVPRFD 152 >gi|27365055|ref|NP_760583.1| ribosome maturation protein RimP [Vibrio vulnificus CMCP6] gi|37680894|ref|NP_935503.1| hypothetical protein VV2710 [Vibrio vulnificus YJ016] gi|320155439|ref|YP_004187818.1| clustered with transcription termination protein NusA [Vibrio vulnificus MO6-24/O] gi|34223112|sp|Q8DBW2|RIMP_VIBVU RecName: Full=Ribosome maturation factor rimP gi|51316954|sp|Q7MI07|RIMP_VIBVY RecName: Full=Ribosome maturation factor rimP gi|27361201|gb|AAO10110.1| clustered with transcription termination protein NusA [Vibrio vulnificus CMCP6] gi|37199643|dbj|BAC95474.1| conserved hypothetical protein [Vibrio vulnificus YJ016] gi|319930751|gb|ADV85615.1| clustered with transcription termination protein NusA [Vibrio vulnificus MO6-24/O] Length = 151 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 77/157 (49%), Gaps = 10/157 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ +++ + + V + + + L+I+++ + +T+ DC E+S +S Sbjct: 2 TGLERQLTEMLESAVVASGYELVGLEFIRAGEHSTLRIYIDH-ENGITVEDCAEVSHQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I Y LEVSSPG+DRP+ + + + ++ G V + ++ +++K G+I Sbjct: 61 AVLDVEDPISVAYSLEVSSPGLDRPLFKPAHYEQFIGQEVNVVLKMAVANRRKWKGEIHS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L + + E + ++ A LI Sbjct: 121 VDGEAITLTVDGQQE--------EFALSNISKANLIP 149 >gi|188026374|ref|ZP_02961857.2| hypothetical protein PROSTU_03929 [Providencia stuartii ATCC 25827] gi|188020155|gb|EDU58195.1| hypothetical protein PROSTU_03929 [Providencia stuartii ATCC 25827] Length = 171 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 77/154 (50%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I +E + F V + + + L++F++ ++ +T+ DC ++S +S +L Sbjct: 25 LEQKLTEMISAPVEALGFEFVGLEFVRARTSTLRVFIDSEE-GITVDDCADVSHQVSAVL 83 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LE+SSPG++RP+ + + R+ G VA + ++ ++++ G I Sbjct: 84 DVEDPISVVYNLEISSPGLERPLFTVAHYERFVGEEVALTLRIAMQNRRRWQGIIKAVEG 143 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + E + ++ A L+ Sbjct: 144 EMITVTVDGKDEV--------FALGNIQKANLVP 169 >gi|259585829|sp|B3PI94|RIMP_CELJU RecName: Full=Ribosome maturation factor rimP Length = 164 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 82/162 (50%), Gaps = 11/162 (6%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++ +I PV+E + + L + L+IF++ ++L DCE +S+ IS +L Sbjct: 5 QERLTDLIVPVVESLGCELWGLEYLTQGRYTTLRIFIDGP-QGVSLDDCERVSRQISAVL 63 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I+G Y LEVSSPG+DRP+ ++ + R+ G V + ++ +++ G I E Sbjct: 64 DVEDPIDGEYTLEVSSPGLDRPLYTEAQYARYVGETVNLRLRIAVEGRRRFKGVISAIEE 123 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT-DELLRA 181 L+ + + + +++ L+ D++LR Sbjct: 124 GALLLQFDN--------QTVRLPIETIDKGNLVPRYDDILRE 157 >gi|52842973|ref|YP_096772.1| hypothetical protein lpg2774 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|81376651|sp|Q5ZRV2|RIMP_LEGPH RecName: Full=Ribosome maturation factor rimP gi|91208410|sp|Q5X1C1|RIMP_LEGPA RecName: Full=Ribosome maturation factor rimP gi|259585808|sp|A5IHU9|RIMP_LEGPC RecName: Full=Ribosome maturation factor rimP gi|52630084|gb|AAU28825.1| hypothetical protein lpg2774 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 147 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 81/153 (52%), Gaps = 10/153 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + D+ +++P+I+ M + + K+ LL+I++++ D + + DC+E+S+ +S + Sbjct: 2 INDDLIVLLEPIIKNMGYELWGCEYLSQGKHSLLRIYIDKPD-GIGIDDCQEVSKQVSAM 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I GHY LE+SSPGI RP+ + R+ G+ + + K+KL G I+ S Sbjct: 61 LDVEDPIPGHYSLEISSPGIPRPLFSIWQYQRYLGYEIHVKTFKPVNGKRKLSGIIVSAS 120 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 E L+ + I +++ A L Sbjct: 121 EDTIVLDINNEHQ--------EILLSNIVKANL 145 >gi|330447379|ref|ZP_08311028.1| ribosome maturation protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491570|dbj|GAA05525.1| ribosome maturation protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 151 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 80/157 (50%), Gaps = 10/157 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 L ++ +++P + + + V + + + L++F++ + + + DC E+S+ IS Sbjct: 2 TALETQLTEMLEPSVLALGYELVGLEFIRAGEHSTLRVFIDH-ENGINVDDCAEVSRQIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++DVE+ I Y LEVSSPG++RP+ + + + ++ GH + + ++ G+++K G I+ Sbjct: 61 AVMDVEDPITVAYNLEVSSPGLERPLFKAAHYEQFVGHEASIVLKMAMGNRRKWKGDIVA 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L + E + + ++ A L+ Sbjct: 121 VDGELITLNVDGNEE--------SFALSNISKANLVP 149 >gi|332290218|ref|YP_004421070.1| hypothetical protein UMN179_02160 [Gallibacterium anatis UMN179] gi|330433114|gb|AEC18173.1| hypothetical protein UMN179_02160 [Gallibacterium anatis UMN179] Length = 153 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 76/155 (49%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + ++QP +E+M F + I +++++++ + +T+ DC ++S+ + I Sbjct: 4 LEQKLQDLLQPTVEDMGFELLGIECTRAGRYSTVRLYIDK-ENGVTIDDCSDVSREVGAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ + + R+ G V + ++ ++K G ++ Sbjct: 63 LDVEDPISDKYNLEVSSPGLDRPLFTLAHYQRFVGEEVVIHLRIAMSGRRKWQGDLIKVD 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L E + +F ++ A ++ Sbjct: 123 GDMITLNVEG--------QEQVFAFSNIQKANIVP 149 >gi|229577503|ref|YP_001178316.2| hypothetical protein Ent638_3607 [Enterobacter sp. 638] Length = 150 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 74/154 (48%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I+ +E + + V I + + L+I+++ +D + + DC ++S +S +L Sbjct: 4 LEQKLTEMIKAPVEALGYELVGIEFIRSRTSTLRIYIDSED-GINVDDCADVSHQVSAVL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+ RPM + + G VA + ++ +++K G I Sbjct: 63 DVEDPITVAYNLEVSSPGLHRPMFTAEHYTHYIGEEVAVVLRMAVQNRRKWQGVIKAVDG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + E + ++ A L+ Sbjct: 123 EMITVTVEGKDEV--------FALSNIQKANLVP 148 >gi|91208369|sp|Q6D9A7|RIMP_ERWCT RecName: Full=Ribosome maturation factor rimP Length = 152 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 77/154 (50%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I + + + V I + + L+I+++ +D +T+ DC ++S +S +L Sbjct: 6 LEQKLTEMISAPVAALGYELVGIEFIRSRQSTLRIYIDSED-GITVDDCADVSHQVSAVL 64 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG++RP+ + +L + G VA + ++ +++K +G I Sbjct: 65 DVEDPITVAYNLEVSSPGLERPLFTAAHYLHFVGEEVAVVLRMAVQNRRKWLGVIKAVDG 124 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + E + ++ A L+ Sbjct: 125 EMITITVEGKDEV--------FALSNIQKANLVP 150 >gi|290454910|emb|CBJ57168.1| YhbC-like protein [Pectobacterium carotovorum] Length = 152 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 76/154 (49%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I + + + V I + + L+I+++ +D +T+ DC ++S +S +L Sbjct: 6 LEQKLTEMISAPVAALGYELVGIEFIRSRQSTLRIYIDSED-GITVDDCADVSHQVSAVL 64 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG++RP+ + +L + G V + ++ +++K +G I Sbjct: 65 DVEDPITVAYNLEVSSPGLERPLFTAAHYLHFVGEEVTVVLRMAVQNRRKWLGVIKAVDG 124 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + E + ++ A L+ Sbjct: 125 EMITITVEGKDEV--------FALSNIQKANLVP 150 >gi|270265057|ref|ZP_06193320.1| putative cytoplasmic protein [Serratia odorifera 4Rx13] gi|270040991|gb|EFA14092.1| putative cytoplasmic protein [Serratia odorifera 4Rx13] Length = 150 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 73/154 (47%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ ++ +E + F V I + + L+I+++ + + + DC ++S +S +L Sbjct: 4 LEQKLTEMLSAPVEALGFELVGIEFIRARQSTLRIYIDS-ENGINVDDCADVSHQVSAVL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE I Y LEVSSPG+DRPM + R+ G V+ + ++ +++K G I Sbjct: 63 DVEEPITVAYNLEVSSPGLDRPMFTAEHYTRFLGEEVSLVLRMAVQNRRKWQGIIKSVDG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + E + ++ A L+ Sbjct: 123 EMITVTVEGKDEV--------FALSNIQKANLVP 148 >gi|90581551|ref|ZP_01237344.1| hypothetical protein VAS14_07344 [Vibrio angustum S14] gi|90437313|gb|EAS62511.1| hypothetical protein VAS14_07344 [Vibrio angustum S14] Length = 151 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 80/157 (50%), Gaps = 10/157 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 L ++ +++P + + + V + + + L++F++ + + + DC E+S+ IS Sbjct: 2 TALETQLTEMLEPSVLALGYELVGLEFIRAGEHSTLRVFIDH-ENGINVDDCAEVSRQIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++DVE+ I Y LEVSSPG++RP+ + + + ++ GH + ++ G+++K G I+ Sbjct: 61 AVMDVEDPITVAYNLEVSSPGLERPLFKAAHYQQFVGHEANIVLKMAMGNRRKWKGDIVA 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L+ + E + + ++ A L+ Sbjct: 121 VEGELITLKVDGNEE--------SFALSNISKANLVP 149 >gi|163802302|ref|ZP_02196196.1| hypothetical protein 1103602000417_AND4_14441 [Vibrio sp. AND4] gi|159173831|gb|EDP58645.1| hypothetical protein AND4_14441 [Vibrio sp. AND4] Length = 151 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 78/157 (49%), Gaps = 10/157 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ +++ +E + + V + + + L+I+++ + + + C E+S +S Sbjct: 2 TGLERQLTEMLEAPVEALGYELVGLEFIRAGAHSTLRIYIDH-ENGINVDACAEVSHQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ +++K G I Sbjct: 61 AVLDVEDPISVAYSLEVSSPGLERPLFKATHYEQFIGHEVSIVLKMAVANRRKWNGIIHN 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + E + ++ A LI Sbjct: 121 VDGETIAVTCEGQQE--------EFALSNISKANLIP 149 >gi|167644003|ref|YP_001681666.1| hypothetical protein Caul_0030 [Caulobacter sp. K31] gi|259585739|sp|B0T164|RIMP_CAUSK RecName: Full=Ribosome maturation factor rimP gi|167346433|gb|ABZ69168.1| protein of unknown function DUF150 [Caulobacter sp. K31] Length = 199 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 53/168 (31%), Positives = 90/168 (53%), Gaps = 6/168 (3%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ PV E + + V++ L+ LQI ER DG+M + DC +LS+AIS ILD Sbjct: 11 LVELLDPVAESVGYEIVRLRLMGGAEQRRLQIMAERPDGDMNVEDCAKLSRAISEILDAA 70 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I G Y LEVSSPG+DRP+ R DF + G V E+ + +++ G++ G + Sbjct: 71 DPISGEYTLEVSSPGVDRPLTRLKDFETYAGLEVRIELDRVAEGRKRFKGELAGVEDGQV 130 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAG 191 L E ++ + F+ ++ A+L++TD+L++ + G Sbjct: 131 GLNLEGE-----DDTTVYFPFEWIVDAKLVLTDQLMKRGAEQRAARVG 173 >gi|197287228|ref|YP_002153100.1| hypothetical protein PMI3416 [Proteus mirabilis HI4320] gi|226703818|sp|B4F2B7|RIMP_PROMH RecName: Full=Ribosome maturation factor rimP gi|194684715|emb|CAR46695.1| conserved hypothetical protein [Proteus mirabilis HI4320] Length = 152 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 81/159 (50%), Gaps = 9/159 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L +++++ +E + F V + + + L+I+++ ++ +T+ DC ++S Sbjct: 1 MGLSTLEQKLTAMVSAPVEALGFEFVGLEFIRGRVSTLRIYIDSEE-GITVDDCADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I+ Y LE+SSPG++RP+ + + ++ G VA + ++ +++K G I Sbjct: 60 VSAVLDVEDPIQTFYNLEISSPGLERPLFTTTHYEQFIGEEVAVVLRIAMQNRRKWQGII 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + + E + ++ A L+ Sbjct: 120 KSVAGEMITVTVDGKDEV--------FALSNIQKANLVP 150 >gi|75760861|ref|ZP_00740875.1| Hypothetical cytosolic protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491645|gb|EAO54847.1| Hypothetical cytosolic protein [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 174 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 84/164 (51%), Gaps = 6/164 (3%) Query: 13 PRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEE 71 R+F D + + + QP++EE++ V + ++E + L++F++ + + + +C Sbjct: 15 RRLFMDKKVTEVVEAFAQPIVEELNLELVDVEYVKEGQDWFLRVFIDS-EKGVDIEECGA 73 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+ +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ Sbjct: 74 VSERLSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMF 133 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 GK++ T L + K +I I D + +ARL VT Sbjct: 134 EGKLLSYDGTTITLLLTIKTRKK----EIQIPMDKVANARLAVT 173 >gi|291327116|ref|ZP_06127048.2| hypothetical protein PROVRETT_09231 [Providencia rettgeri DSM 1131] gi|291311612|gb|EFE52065.1| hypothetical protein PROVRETT_09231 [Providencia rettgeri DSM 1131] Length = 171 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 77/154 (50%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I +E + F V + + + L++F++ ++ +T+ DC ++S +S +L Sbjct: 25 LEQKLTEMISAPVEALGFEFVGLEFVRGRTSTLRVFIDSEE-GITVDDCADVSHQVSAVL 83 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LE+SSPG++RP+ + + R+ G VA + ++ +++K G I Sbjct: 84 DVEDPISVIYNLEISSPGLERPLFTIAHYERFMGEEVALTLRIAMQNRRKWQGIIKAIDG 143 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + E + ++ A L+ Sbjct: 144 EMITVTVDGKDEV--------FALGNIQKANLVP 169 >gi|259586207|sp|A8G905|RIMP_SERP5 RecName: Full=Ribosome maturation factor rimP Length = 152 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 74/159 (46%), Gaps = 9/159 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++ ++ +E + F V I + + L+I+++ + + + DC ++S Sbjct: 1 MGLSTLEQKLTEMLSAPVEALGFELVGIEFIRARQSTLRIYIDS-ENGINVDDCADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE I Y LEVSSPG+DRPM + R+ G V+ + ++ +++K G I Sbjct: 60 VSAVLDVEEPITVAYNLEVSSPGLDRPMFTAEHYTRFLGDEVSLVLRMAVQNRRKWQGII 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + E + ++ A L+ Sbjct: 120 KSVDGEMITVAVEGKDEV--------FALSNIQKANLVP 150 >gi|254496139|ref|ZP_05109037.1| conserved hypothetical protein [Legionella drancourtii LLAP12] gi|254354626|gb|EET13263.1| conserved hypothetical protein [Legionella drancourtii LLAP12] Length = 147 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 78/153 (50%), Gaps = 10/153 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + ++ ++ P I +M + + K+ LL+I++++ D + + DC+++S +S + Sbjct: 2 IQDELEQLLAPTINDMGYELWGCEYLSQGKHSLLRIYIDKAD-GIGIEDCQDVSHQVSAL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I G+Y LEVSSPGI RP+ + R+ G V + +K+KL+G I+ S Sbjct: 61 LDVEDPIPGNYSLEVSSPGIPRPLFYSWQYQRYIGQSVQIKTFKPVNNKRKLLGTIVSAS 120 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 E L + F +++ A L Sbjct: 121 ENSVVLNINGEDH--------ELLFSNIVKAYL 145 >gi|148556721|ref|YP_001264303.1| hypothetical protein Swit_3820 [Sphingomonas wittichii RW1] gi|259586199|sp|A5VCZ9|RIMP_SPHWW RecName: Full=Ribosome maturation factor rimP gi|148501911|gb|ABQ70165.1| protein of unknown function DUF150 [Sphingomonas wittichii RW1] Length = 186 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 50/166 (30%), Positives = 85/166 (51%), Gaps = 9/166 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDD-GNMTLRDCEELSQAI 76 M ++ +I+P + + V+++ K+ LQ+ ER D + + DCE LS+ I Sbjct: 1 MADIAALTKLIEPEAKALGLDLVRVAFFGGKSDPTLQVMAERPDTRQLDIADCEALSRRI 60 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 S D + IE YRLEVSSPGIDRP+ R D+ W+G ++ +++ G+I+ Sbjct: 61 SDKFDELDPIEDAYRLEVSSPGIDRPLTRVKDWADWSGFDARVKLAAPLDGRKQFDGRIV 120 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS 182 + L K G ++ + + SA+LI+TD L++A+ Sbjct: 121 ASDGDSVTLGVNKLG-------EVTVPLAQIASAKLILTDALIKAT 159 >gi|259585711|sp|A0KNE5|RIMP_AERHH RecName: Full=Ribosome maturation factor rimP Length = 152 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 78/156 (50%), Gaps = 10/156 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ +++ + + F I + K+ L+++++ + +++ +C E+S + I Sbjct: 4 LEQRLTDLLEAPVVALGFELWGIEFIRAGKHSTLRVYIDG-EHGVSVENCAEVSHQVGAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +DVE+ I Y LEVSSPG+DRP+ + + F ++ G A + +++ +++K G I Sbjct: 63 MDVEDPITEEYYLEVSSPGLDRPLFKVAQFEKYVGQEAAVTLRMATNNRRKFKGVIKAVQ 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 L + + E ++F ++ A ++ Sbjct: 123 GDMITLTVDGKDEV--------LAFTNIQKANIVPN 150 >gi|156975665|ref|YP_001446572.1| hypothetical protein VIBHAR_03398 [Vibrio harveyi ATCC BAA-1116] gi|166990836|sp|A7MUV0|RIMP_VIBHB RecName: Full=Ribosome maturation factor rimP gi|156527259|gb|ABU72345.1| hypothetical protein VIBHAR_03398 [Vibrio harveyi ATCC BAA-1116] Length = 151 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 77/157 (49%), Gaps = 10/157 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ +++ +E + V + + + L+I+++ + + + C E+S +S Sbjct: 2 TGLERQLTEMLEAPVEATGYELVGLEFIRAGAHSTLRIYIDH-ENGINVDACAEVSHQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ +++K G I Sbjct: 61 AVLDVEDPISVAYSLEVSSPGLERPLFKAAHYEQFIGHEVSIVLKMAVANRRKWKGIIHS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + E + ++ A LI Sbjct: 121 VDGETIAVTCEGQQE--------EFALSNISKANLIP 149 >gi|254490571|ref|ZP_05103757.1| conserved hypothetical protein [Methylophaga thiooxidans DMS010] gi|224464315|gb|EEF80578.1| conserved hypothetical protein [Methylophaga thiooxydans DMS010] Length = 148 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 M + + +I+ IE + + V + ++ +L+I+++ + + + DCE++S IS Sbjct: 1 MAITDQVEQLIEAPIESLGYELVGVEYIQGGPDAILRIYID-AEQGIGIEDCEKVSHQIS 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE I Y LEVSSPG DRP+ + DF R+ G V + L ++ G + G Sbjct: 60 GVLDVEEPIRSAYMLEVSSPGFDRPLFKARDFERFAGAEVKISMKLPVQGRRNFTGVLQG 119 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 S+ +E + A+ L ARL+ Sbjct: 120 FSDGEVLIEVDGEI--------YALPLAKLAKARLV 147 >gi|209694188|ref|YP_002262116.1| hypothetical protein VSAL_I0596 [Aliivibrio salmonicida LFI1238] gi|226707769|sp|B6ENE0|RIMP_ALISL RecName: Full=Ribosome maturation factor rimP gi|208008139|emb|CAQ78281.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238] Length = 151 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 78/157 (49%), Gaps = 10/157 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ +++ + + + V + + + L++F++ + + + DC E S+ IS Sbjct: 2 TGLERQLTEMLEAPVGALGYELVGLEFIRAGEHSTLRVFIDH-ENGIFVEDCAEASRQIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++DVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + + +++K G I+ Sbjct: 61 AVMDVEDPITVAYNLEVSSPGLERPLFKAAHYQQFVGHEVSLVLKMPMNNRRKWKGDILD 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + E + ++ A L+ Sbjct: 121 INGEIVTVTVDGNNE--------EFALSNISKANLVP 149 >gi|153876665|ref|ZP_02003868.1| Protein of unknown function DUF150 [Beggiatoa sp. PS] gi|152066871|gb|EDN66132.1| Protein of unknown function DUF150 [Beggiatoa sp. PS] Length = 144 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 73/154 (47%), Gaps = 11/154 (7%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L + ++ P+I + + V + L + LL+++++ + L DCE +S +S +L Sbjct: 2 LDNQLQQLLAPIIIGLGYELVGVERLS--STLLRVYIDHP-KGINLSDCERVSYQVSGVL 58 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DV+N I+G Y LEVSSPG DRP+ F R+ GH V + ++ G + + Sbjct: 59 DVQNPIKGRYTLEVSSPGWDRPLFTLEHFKRFVGHKVKVSLRQPKEGQRHFTGLLQAIED 118 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + E + + ++ + A L+ Sbjct: 119 RNVIVVAD--------ETEYCLPYEKIDKAHLVP 144 >gi|259585706|sp|Q0VSS3|RIMP_ALCBS RecName: Full=Ribosome maturation factor rimP Length = 151 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 37/151 (24%), Positives = 78/151 (51%), Gaps = 9/151 (5%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 ++ ++ PV+E++ F + ++ + +L++F++ D +++ DC +S +S +LD Sbjct: 5 TEQLTELLAPVVEDLGFVLWGVEYIQGRGAVLRVFIDHAD-GISVDDCAAVSHEVSGVLD 63 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I G + LEVSSPG+DRPM + ++ + G V +++ K+K+ I+ Sbjct: 64 VEDPIPGEFNLEVSSPGMDRPMFDITQYVDYIGEDVQLKLLAPVSGKRKMTAAIVAVDGD 123 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +E + + + + + ARL Sbjct: 124 TLVVELDGE--------TLRVPYSQVDRARL 146 >gi|254507524|ref|ZP_05119658.1| conserved hypothetical protein [Vibrio parahaemolyticus 16] gi|219549594|gb|EED26585.1| conserved hypothetical protein [Vibrio parahaemolyticus 16] Length = 151 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 78/157 (49%), Gaps = 10/157 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ +++ + + V + + + L+IF++ + + + DC E+S+ +S Sbjct: 2 TGLERQLTEMLEAPVAASGYELVGLEFIRAGEHSTLRIFIDH-ENGINVEDCAEVSRQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++DVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ G+++K G I Sbjct: 61 AVMDVEDPITVAYNLEVSSPGLERPLFKAAHYEQFIGHEVSIVLKMAVGNRRKWKGVIHS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + E + ++ A LI Sbjct: 121 VDGETISVTVDGNEE--------EFALSNISKANLIP 149 >gi|260775411|ref|ZP_05884308.1| UPF0090 domain-containing protein [Vibrio coralliilyticus ATCC BAA-450] gi|260608592|gb|EEX34757.1| UPF0090 domain-containing protein [Vibrio coralliilyticus ATCC BAA-450] Length = 151 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 79/157 (50%), Gaps = 10/157 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ +++ + + V + + + L+IF++ + +++ DC E+S+ +S Sbjct: 2 TGLERQLTEMLEAPVAASGYELVGLEFIRAGEHSTLRIFIDH-ENGISVDDCAEVSRQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++DVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ G+++K G I Sbjct: 61 AVMDVEDPITVAYNLEVSSPGLERPLFKAAHYEQFIGHEVSIVLKMAVGNRRKWKGVIHA 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + E + ++ A LI Sbjct: 121 IEGETVTVTVDGNAE--------EFALSNISKANLIP 149 >gi|311695960|gb|ADP98833.1| protein belonging to uncharacterized protein family UPF0090 [marine bacterium HP15] Length = 153 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 81/156 (51%), Gaps = 9/156 (5%) Query: 23 GDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + ++QPV+E + + I + + LL++F++ + + + DCE++S+ IS ++D Sbjct: 6 KQLEDILQPVVEGLGYEFWGIEFRSQGHHSLLRVFIDDAENGIGVDDCEKVSRQISGVMD 65 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I+ Y LEVSSPG+DRP+ R + + GH V + ++ ++K G I G Sbjct: 66 VEDPIQTEYTLEVSSPGMDRPLFRLEQYEAFVGHQVQIRLRMAFEGRRKFQGLIKGVEG- 124 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 +++ + + FDS+ A ++ E Sbjct: 125 -------DDVVVVVDDHEYLLPFDSIEKAHIVPVFE 153 >gi|253991504|ref|YP_003042860.1| hypothetical protein PAU_04031 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638382|emb|CAR67004.1| Conserved Hypothetical Protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782954|emb|CAQ86119.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 152 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 37/159 (23%), Positives = 78/159 (49%), Gaps = 9/159 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++++I +E + F V + + + L+I+++ + +T+ DC ++S Sbjct: 1 MGLSTLEQKLTAMISAPVEALGFELVGLEFIRARVSTLRIYIDS-ENGITVDDCADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LE+SSPG++RP+ + R+ G V+ + L+ +++K +G I Sbjct: 60 VSAVLDVEDPISVLYNLEISSPGLERPLFTAEHYQRFIGEEVSLVLRLAMQNRRKWLGVI 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + E + ++ A L+ Sbjct: 120 KTVDGEMITVTVDGKDEV--------FALSNIQKANLVP 150 >gi|118479037|ref|YP_896188.1| hypothetical protein BALH_3445 [Bacillus thuringiensis str. Al Hakam] gi|118418262|gb|ABK86681.1| conserved hypothetical protein [Bacillus thuringiensis str. Al Hakam] Length = 174 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 84/164 (51%), Gaps = 6/164 (3%) Query: 13 PRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEE 71 R+F D + + + QP++EE++ V + ++E + L++F++ + + + +C Sbjct: 15 RRLFMDKKVTEVVEAFAQPIVEELNLELVDVEYVKEGQDWFLRVFIDS-EKGVDIEECGA 73 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+ +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ Sbjct: 74 VSERLSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMF 133 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 GK++ T L + K +I I D + +ARL VT Sbjct: 134 EGKMLSYDGTTITLLLTIKTRKK----EIQIPMDKVANARLAVT 173 >gi|56419794|ref|YP_147112.1| hypothetical protein GK1259 [Geobacillus kaustophilus HTA426] gi|81347603|sp|Q5L0J2|RIMP_GEOKA RecName: Full=Ribosome maturation factor rimP gi|56379636|dbj|BAD75544.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 157 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 79/159 (49%), Gaps = 6/159 (3%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQA 75 + + ++ P+++EM V I ++ KN L++F++ DD + + C +S+ Sbjct: 1 MSKKVTETVEQLVTPILDEMGLELVDIEYVKEGKNWFLRVFIDSDD-GVDIEQCGAVSEK 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LD + I +Y LEVSSPG +RP+ + DF + G V + +++ G++ Sbjct: 60 LSEKLDEVDPIPHNYFLEVSSPGAERPLKKAKDFAKAIGKNVYIKTYEPIEGEKQFEGEL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 T L + RG + +AI ++ + SARL V Sbjct: 120 TAFDGTTVTLLVKDRG----RQKTVAIPYEKVASARLAV 154 >gi|229593539|ref|YP_001476723.2| hypothetical protein Spro_0487 [Serratia proteamaculans 568] Length = 150 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 73/154 (47%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ ++ +E + F V I + + L+I+++ + + + DC ++S +S +L Sbjct: 4 LEQKLTEMLSAPVEALGFELVGIEFIRARQSTLRIYIDS-ENGINVDDCADVSHQVSAVL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE I Y LEVSSPG+DRPM + R+ G V+ + ++ +++K G I Sbjct: 63 DVEEPITVAYNLEVSSPGLDRPMFTAEHYTRFLGDEVSLVLRMAVQNRRKWQGIIKSVDG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + E + ++ A L+ Sbjct: 123 EMITVAVEGKDEV--------FALSNIQKANLVP 148 >gi|51316751|sp|Q7MYY5|RIMP_PHOLL RecName: Full=Ribosome maturation factor rimP gi|36787788|emb|CAE16903.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 152 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 78/159 (49%), Gaps = 9/159 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L ++++I +E + F V + + + L+I+++ + +T+ DC ++S Sbjct: 1 MGLSTLEQKLTAMISAPVEALGFELVGLEFIRARVSTLRIYIDS-ENGITVDDCADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I Y LE+SSPG++RP+ + R+ G V+ + ++ +++K +G I Sbjct: 60 VSAVLDVEDPISVLYNLEISSPGLERPLFTTEHYQRFIGEEVSLVLRIAMQNRRKWLGII 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + E + ++ A L+ Sbjct: 120 KTVDGEMITVTVDGKDEV--------FALSNIQKANLVP 150 >gi|119477403|ref|ZP_01617594.1| hypothetical protein GP2143_00477 [marine gamma proteobacterium HTCC2143] gi|119449329|gb|EAW30568.1| hypothetical protein GP2143_00477 [marine gamma proteobacterium HTCC2143] Length = 151 Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 72/151 (47%), Gaps = 10/151 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ ++ PV E + ++ + K +++I+++ D + + DC ++S+ + + DVE Sbjct: 8 LADLVAPVAEALGYQLWGVEYLSHGKQSVVRIYIDSPD-GIDVDDCAKVSRQVGSVFDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I G Y LEVSSPG+DRP+ + + G V ++ + ++ G++ Sbjct: 67 DPIMGEYTLEVSSPGMDRPLFALEQYRPYVGEQVKIKLRTAFDGRRNFSGRMTAIEG--- 123 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +++ + + F+ + A ++ Sbjct: 124 -----DDVVVAVDDEEYLLPFELIDKANIVP 149 >gi|65321144|ref|ZP_00394103.1| COG0779: Uncharacterized protein conserved in bacteria [Bacillus anthracis str. A2012] Length = 174 Score = 135 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 84/164 (51%), Gaps = 6/164 (3%) Query: 13 PRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEE 71 R+F D + + + QP++EE++ V + ++E + L++F++ + + + +C Sbjct: 15 RRLFMDKKVTEVVEAFAQPIVEELNLELVDVEYVKEGQDWFLRVFIDS-EKGVDIEECGA 73 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+ +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ Sbjct: 74 VSERLSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMF 133 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 GK++ T L + K +I I D + +ARL VT Sbjct: 134 EGKMLSYDGTTITLLLTIKTRKK----EIQIPMDKVANARLAVT 173 >gi|261419459|ref|YP_003253141.1| hypothetical protein GYMC61_2043 [Geobacillus sp. Y412MC61] gi|319766274|ref|YP_004131775.1| hypothetical protein GYMC52_1166 [Geobacillus sp. Y412MC52] gi|261375916|gb|ACX78659.1| protein of unknown function DUF150 [Geobacillus sp. Y412MC61] gi|317111140|gb|ADU93632.1| protein of unknown function DUF150 [Geobacillus sp. Y412MC52] Length = 157 Score = 135 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 79/159 (49%), Gaps = 6/159 (3%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQA 75 + + ++ P+++EM V I ++ KN L++F++ DD + + C +S+ Sbjct: 1 MSKKVTETVEQLVTPILDEMGLELVDIEYVKEGKNWFLRVFIDSDD-GVDIEQCGAVSEK 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LD + I +Y LEVSSPG +RP+ + DF + G V + +++ G++ Sbjct: 60 LSEKLDEVDPIPYNYFLEVSSPGAERPLKKAKDFAKAIGKNVYIKTYEPIEGEKQFEGEL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 T L + RG + +AI ++ + SARL V Sbjct: 120 TAFDGTTVTLLVKDRG----RQKTVAIPYEKVASARLAV 154 >gi|53804602|ref|YP_113779.1| hypothetical protein MCA1317 [Methylococcus capsulatus str. Bath] gi|81682218|sp|Q609B8|RIMP_METCA RecName: Full=Ribosome maturation factor rimP gi|53758363|gb|AAU92654.1| conserved hypothetical protein [Methylococcus capsulatus str. Bath] Length = 150 Score = 135 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 45/159 (28%), Positives = 80/159 (50%), Gaps = 10/159 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 M + + +I+PV+ + + I + + +L+++++ + L DC ++S +S Sbjct: 1 MRMPEHLQRLIEPVVTGLGYELAGIEF-DARARVLRVYIDHP-QGIGLDDCSKVSYQLSG 58 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LDVE+ I G Y+LE+SSPG+DRP+ F R+ G V + + S +++ G+I G Sbjct: 59 MLDVEDPIPGQYQLEISSPGLDRPLFTLEHFKRFTGRRVRLQTLRSLDGQRRFKGEIAGV 118 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 LE + AI FD + ARLI + Sbjct: 119 RGDVIDLEDDNGLH--------AIPFDLIDKARLIPEFD 149 >gi|261253852|ref|ZP_05946425.1| UPF0090 domain-containing protein [Vibrio orientalis CIP 102891] gi|260937243|gb|EEX93232.1| UPF0090 domain-containing protein [Vibrio orientalis CIP 102891] Length = 151 Score = 135 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 78/157 (49%), Gaps = 10/157 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ +++ + + V + + + L+IF++ + + + DC E+S+ +S Sbjct: 2 TGLERQLTEMLEAPVAASGYELVGLEFIRAGEHSTLRIFIDH-ENGINVDDCAEVSRQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++DVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ G+++K G I Sbjct: 61 AVMDVEDPITVAYNLEVSSPGLERPLFKAAHYEQFIGHEVSIVLKMAVGNRRKWKGVIHA 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E E + ++ A LI Sbjct: 121 VDGETISVTVEGNEE--------EFALSNISKANLIP 149 >gi|323491075|ref|ZP_08096267.1| ribosome maturation protein RimP [Vibrio brasiliensis LMG 20546] gi|323314739|gb|EGA67811.1| ribosome maturation protein RimP [Vibrio brasiliensis LMG 20546] Length = 151 Score = 135 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 78/157 (49%), Gaps = 10/157 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ +++ + + V + + + L+IF++ + + + DC E+S+ +S Sbjct: 2 TGLERQLTEMLEAPVAASGYELVGLEFIRAGEHSTLRIFIDH-ENGINVEDCAEVSRQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++DVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ G+++K G I Sbjct: 61 AVMDVEDPITVAYNLEVSSPGLERPLFKAAHYEQFIGHEVSIVLKMAVGNRRKWKGIIHS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E E + ++ A LI Sbjct: 121 VDGETISVTVEGNEE--------EFALSNISKANLIP 149 >gi|170717518|ref|YP_001784610.1| hypothetical protein HSM_1288 [Haemophilus somnus 2336] gi|226695902|sp|B0UU11|RIMP_HAES2 RecName: Full=Ribosome maturation factor rimP gi|168825647|gb|ACA31018.1| protein of unknown function DUF150 [Haemophilus somnus 2336] Length = 153 Score = 135 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 76/155 (49%), Gaps = 9/155 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 L + ++QP +E++ I +++++++ DG +T+ DC ++S+ +S + Sbjct: 4 LEDKLQELLQPSVEDLGCELWGIECQRSGRFFTVRLYIDKKDGGVTVDDCADVSRQVSAV 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG++RP+ F + G ++ + + D++K GK+ Sbjct: 64 LDVEDPIADKYNLEVSSPGLNRPLFTLKQFENYIGQDISVHLRVPMFDRRKWQGKLEKIE 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L + + + + F ++ A ++ Sbjct: 124 NDMLTLIVDNQPQVLV--------FGNIQKANVVP 150 >gi|322514416|ref|ZP_08067459.1| hypothetical protein HMPREF0027_1211 [Actinobacillus ureae ATCC 25976] gi|322119664|gb|EFX91722.1| hypothetical protein HMPREF0027_1211 [Actinobacillus ureae ATCC 25976] Length = 153 Score = 135 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + ++ IE M V I L +++++++ +G +T+ DC ++S+ +S I Sbjct: 4 LEQKLEELVSDTIESMGCELVGIECQRAGRFLTVRLYIDK-EGGVTIDDCSDVSRQVSAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ + R+ G V + + D++K GK+ Sbjct: 63 LDVEDPIADKYNLEVSSPGLDRPLFTLVHYQRFIGQEVVIHLCIPMFDRRKWQGKLESVE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L + +F ++ A L+ Sbjct: 123 GDLITLTVDNEAR--------QFAFGNIQKANLVP 149 >gi|320540175|ref|ZP_08039830.1| putative conserved protein [Serratia symbiotica str. Tucson] gi|320029841|gb|EFW11865.1| putative conserved protein [Serratia symbiotica str. Tucson] Length = 156 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 73/154 (47%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ ++ +E + F V I + + L+I+++ + + + DC ++S +S +L Sbjct: 10 LEQKLTEMLLAPVEALGFEFVGIEFIRARQSTLRIYIDS-ENGINVDDCADVSHQVSAVL 68 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE I Y LEVSSPG+DRPM + R+ G V+ + ++ +++K G I Sbjct: 69 DVEEPIAVAYNLEVSSPGLDRPMFTAEHYTRFLGEEVSLVLRMAVQNRRKWQGIIKSVEG 128 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + E + ++ A LI Sbjct: 129 EMITVTVDGKDEV--------FALSNIQKANLIP 154 >gi|269961978|ref|ZP_06176333.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269833301|gb|EEZ87405.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 151 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 77/157 (49%), Gaps = 10/157 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ +++ +E + V + + + L+I+++ + + + C E+S +S Sbjct: 2 TGLERQLTEMLEAPVEASGYELVGLEFIRAGAHSTLRIYIDH-ENGINVDACAEVSHQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ +++K G I Sbjct: 61 AVLDVEDPISVAYSLEVSSPGLERPLFKAAHYEQFIGHEVSIVLKMAVANRRKWAGIIHS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + E + ++ A LI Sbjct: 121 VDGETIAVTVDGQQE--------EFALSNISKANLIP 149 >gi|119713530|gb|ABL97583.1| hypothetical protein MBMO_EB0-35D03.0046 [uncultured marine bacterium EB0_35D03] Length = 153 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 77/155 (49%), Gaps = 8/155 (5%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 +A + S+I P I ++ + + + K+ +L+++++ + + + DCE +S+ +S Sbjct: 3 KIADKLFSIINPSINDLGYELLGVEYVSSGKHSVLRLYIDS-EKGIGVDDCETVSRQVSA 61 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 I+DVE+ I G Y LEVSSPGI+RP+ + + + R+ GH V ++ G I Sbjct: 62 IMDVEDPISGQYNLEVSSPGIERPLFKVAHYQRFLGHDVRLRTYRPLDGRRNFTGAIGSV 121 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 SET E + + D + A L+ Sbjct: 122 SETSNTFEL------VTELGPVTLDIDLIEKANLV 150 >gi|221134837|ref|ZP_03561140.1| hypothetical protein GHTCC_07897 [Glaciecola sp. HTCC2999] Length = 165 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 76/157 (48%), Gaps = 10/157 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 L ++ ++ P E + F V + + K+ +L++F++ D +++ C ++SQ S Sbjct: 15 SQLEKKLTEMLTPAAESLGFEMVGVEFVRAGKHSILRVFIDHPD-GISVDHCADVSQQAS 73 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ILDVE+ I Y LEVSSPG+DRP+ + + + G +VA + + +++ G ++ Sbjct: 74 AILDVEDPINTEYNLEVSSPGMDRPLFKTAHYEAIVGEMVAVRLRMPMNERRNFKGTLLS 133 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + + ++ ++ L+ Sbjct: 134 CENDNIVVEVDGQS--------YTLAIMNIEKGNLVP 162 >gi|303249648|ref|ZP_07335853.1| hypothetical protein APP6_1055 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303253713|ref|ZP_07339850.1| hypothetical protein APP2_0900 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247607|ref|ZP_07529650.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307252188|ref|ZP_07534086.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307256658|ref|ZP_07538437.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|302647438|gb|EFL77657.1| hypothetical protein APP2_0900 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302651460|gb|EFL81611.1| hypothetical protein APP6_1055 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306855877|gb|EFM88037.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306860332|gb|EFM92347.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306864706|gb|EFM96610.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 153 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + ++ IE M V I L +++++++ +G +T+ DC ++S+ +S I Sbjct: 4 LEQKLEELVSDTIESMGCELVGIECQRAGRFLTVRLYIDK-EGGVTIDDCSDVSRQVSAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ + R+ G V + + D++K GK+ Sbjct: 63 LDVEDPIADKYNLEVSSPGLDRPLFTLKHYQRFIGQEVVIHLRIPMFDRRKWQGKLESVE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L + +F ++ A L+ Sbjct: 123 GDLITLTVDNE--------TRQFAFGNIQKANLVP 149 >gi|229525294|ref|ZP_04414699.1| clustered with transcription termination protein NusA [Vibrio cholerae bv. albensis VL426] gi|229338875|gb|EEO03892.1| clustered with transcription termination protein NusA [Vibrio cholerae bv. albensis VL426] Length = 151 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 81/157 (51%), Gaps = 10/157 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ +++ + + V + + ++ L+IF++ + +T+ DC E+S+ +S Sbjct: 2 TGLERQLTEMLEAPVVAAGYELVGLEFVRAGQHSTLRIFIDH-ENGITVEDCAEVSRQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ G+++K G I Sbjct: 61 AVLDVEDPISVVYNLEVSSPGLERPLFKAAHYEQFIGHEVSIVLKMAVGNRRKWKGIIQS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + E + ++ A LI Sbjct: 121 IDGETVVVMVDGQEEH--------FALSNISKANLIP 149 >gi|33152525|ref|NP_873878.1| hypothetical protein HD1463 [Haemophilus ducreyi 35000HP] gi|51316788|sp|Q7VLI0|RIMP_HAEDU RecName: Full=Ribosome maturation factor rimP gi|33148748|gb|AAP96267.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP] Length = 154 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 43/155 (27%), Positives = 77/155 (49%), Gaps = 9/155 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ +I IE M + V + L +++++++ +G +T+ DC ++S+ +S I Sbjct: 4 LEQKLTVLISDTIESMGYELVGVECQHAGRFLTVRLYIDK-EGGVTIDDCSDVSRQVSAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 DVE+ I Y LEVSSPG+DRP+ + + R+ G + + + D++K GK+ Sbjct: 63 FDVEDPISDKYNLEVSSPGLDRPLFTLAHYARFVGREMVIHLRIPMFDRRKWQGKLTKVD 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 LE E G + F ++ A LI Sbjct: 123 GDLISLEIENNG-------EHQFIFSNIQKANLIP 150 >gi|262401661|ref|ZP_06078227.1| UPF0090 domain-containing protein [Vibrio sp. RC586] gi|262352078|gb|EEZ01208.1| UPF0090 domain-containing protein [Vibrio sp. RC586] Length = 151 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 80/157 (50%), Gaps = 10/157 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ +++ + + V + + ++ L+IF++ + +T+ DC E+S+ +S Sbjct: 2 TGLERQLTEMLEAPVVAAGYELVGLEFVRAGQHSTLRIFIDH-ENGITVEDCAEVSRQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ +++K G I Sbjct: 61 AVLDVEDPISVVYNLEVSSPGLERPLFKPAHYEQFIGHEVSIVLKMAVANRRKWKGIIQS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + E + ++ A LI Sbjct: 121 IEGETVAVTVDGQEEH--------FALSNISKANLIP 149 >gi|161579560|ref|NP_931695.2| hypothetical protein plu4531 [Photorhabdus luminescens subsp. laumondii TTO1] Length = 150 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 77/154 (50%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++++I +E + F V + + + L+I+++ + +T+ DC ++S +S +L Sbjct: 4 LEQKLTAMISAPVEALGFELVGLEFIRARVSTLRIYIDS-ENGITVDDCADVSHQVSAVL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LE+SSPG++RP+ + R+ G V+ + ++ +++K +G I Sbjct: 63 DVEDPISVLYNLEISSPGLERPLFTTEHYQRFIGEEVSLVLRIAMQNRRKWLGIIKTVDG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + E + ++ A L+ Sbjct: 123 EMITVTVDGKDEV--------FALSNIQKANLVP 148 >gi|145298042|ref|YP_001140883.1| hypothetical protein ASA_1008 [Aeromonas salmonicida subsp. salmonicida A449] gi|166919114|sp|A4SJR3|RIMP_AERS4 RecName: Full=Ribosome maturation factor rimP gi|142850814|gb|ABO89135.1| conserved hypothetical protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 152 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 78/156 (50%), Gaps = 10/156 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ +++ + + F I + + L++F++ + +T+ +C E+S + I Sbjct: 4 LEQRLTDLLEAPVVALGFELWGIEFIRAGNHSTLRVFIDG-ENGVTVENCAEVSHQVGAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +DVE+ I Y LEVSSPG+DRP+ + + F ++ G A ++ +++ +++K G I Sbjct: 63 MDVEDPITEEYFLEVSSPGLDRPLFKVAQFEKYVGQEAAVQLRMATNNRRKFKGVIKAVQ 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 L + + + ++F ++ A ++ Sbjct: 123 GDMITLTVDGKDDV--------LAFTNIQKANIVPN 150 >gi|312885215|ref|ZP_07744894.1| hypothetical protein VIBC2010_19055 [Vibrio caribbenthicus ATCC BAA-2122] gi|309367155|gb|EFP94728.1| hypothetical protein VIBC2010_19055 [Vibrio caribbenthicus ATCC BAA-2122] Length = 151 Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 77/157 (49%), Gaps = 10/157 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ +++ + + V + + + L+IF++ + + + DC E+S+ +S Sbjct: 2 TGLEKQLTEMLEAPVAASGYELVGLEFIRAGEHSTLRIFIDHAN-GINVEDCAEVSRQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++DVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ +++K G I Sbjct: 61 AVMDVEDPITVAYNLEVSSPGLERPLFKAAHYEQFIGHEVSLVLKMAMNNRRKWKGIIES 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + E + ++ A LI Sbjct: 121 VDGEIISIAVDGNTE--------EFALSNISKANLIP 149 >gi|297530566|ref|YP_003671841.1| hypothetical protein GC56T3_2294 [Geobacillus sp. C56-T3] gi|297253818|gb|ADI27264.1| protein of unknown function DUF150 [Geobacillus sp. C56-T3] Length = 157 Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 79/159 (49%), Gaps = 6/159 (3%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQA 75 + + ++ P+++EM V I ++ KN L++F++ DD + + C +S+ Sbjct: 1 MSKKVTETVEQLVTPILDEMGLELVDIEYVKEGKNWFLRVFIDSDD-GVDIEQCGAVSEK 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LD + I +Y LEVSSPG +RP+ + DF + G V + +++ G++ Sbjct: 60 LSEKLDEVDPIPYNYFLEVSSPGAERPLKKAKDFAKAIGKNVYIKTYEPIEGERQFEGEL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 T L + RG + +AI ++ + SARL V Sbjct: 120 TAFDGTTVTLLVKDRG----RQKTVAIPYEKVASARLAV 154 >gi|292492784|ref|YP_003528223.1| hypothetical protein Nhal_2769 [Nitrosococcus halophilus Nc4] gi|291581379|gb|ADE15836.1| protein of unknown function DUF150 [Nitrosococcus halophilus Nc4] Length = 150 Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 75/154 (48%), Gaps = 10/154 (6%) Query: 22 AGDISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 IS +++PV+ + + V + L K +LL+I+++ +T+ DCE +S +S +L Sbjct: 4 DERISKLVEPVVTALGYELVGVERLSIGKGVLLRIYIDTPL-GVTVDDCERVSHQVSALL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE + Y LE+SSPG+DRP+ + F R+ G V+ + +++ G + G Sbjct: 63 DVEEPMASPYTLEISSPGLDRPLFTEEHFKRFAGAEVSITLSEPLNGRRRFKGLLRGMRG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + + + + ARLI Sbjct: 123 NCVVILAEGE--------EFELPLEGIRKARLIP 148 >gi|228992545|ref|ZP_04152472.1| hypothetical protein bpmyx0001_32850 [Bacillus pseudomycoides DSM 12442] gi|228998593|ref|ZP_04158180.1| hypothetical protein bmyco0003_31540 [Bacillus mycoides Rock3-17] gi|229006093|ref|ZP_04163781.1| hypothetical protein bmyco0002_30140 [Bacillus mycoides Rock1-4] gi|228755169|gb|EEM04526.1| hypothetical protein bmyco0002_30140 [Bacillus mycoides Rock1-4] gi|228761061|gb|EEM10020.1| hypothetical protein bmyco0003_31540 [Bacillus mycoides Rock3-17] gi|228767179|gb|EEM15815.1| hypothetical protein bpmyx0001_32850 [Bacillus pseudomycoides DSM 12442] Length = 164 Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 45/167 (26%), Positives = 85/167 (50%), Gaps = 6/167 (3%) Query: 10 KYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRD 68 E R+F D + + ++ QP++EE++ V + ++ K+ L++ ++ + + + + Sbjct: 2 AAERRLFMDKKVTEVVEALAQPIVEELNLELVDVEYVKEGKDWFLRVSIDS-ETGVDIEE 60 Query: 69 CEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 C +S+ +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + + Sbjct: 61 CGAVSERLSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGE 120 Query: 129 QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + GK++ T L + K +I I D + +ARL VT Sbjct: 121 KMFEGKLLSYDGTTITLLLTIKTRKK----EIQIPMDKVANARLAVT 163 >gi|152995056|ref|YP_001339891.1| hypothetical protein Mmwyl1_1025 [Marinomonas sp. MWYL1] gi|189038545|sp|A6VU27|RIMP_MARMS RecName: Full=Ribosome maturation factor rimP gi|150835980|gb|ABR69956.1| protein of unknown function DUF150 [Marinomonas sp. MWYL1] Length = 153 Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 41/152 (26%), Positives = 80/152 (52%), Gaps = 10/152 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERD-DGNMTLRDCEELSQAISPILDV 82 + +I+PV+E + F + L K+ +L+I++E D + + + DC +S+ +S ILDV Sbjct: 8 LEELIRPVVEGLGFEFWGMEYLSLGKDSVLRIYIETDAEKGIDVEDCARVSRQVSSILDV 67 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ I G Y LEVSSPG+DRP+ + + + G +V+ + + ++K G++MG Sbjct: 68 EDPITGEYNLEVSSPGLDRPLFSLAQYQAYIGSIVSLRLRVPFDGRRKFKGQLMGIESED 127 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + ++ + + D + A ++ Sbjct: 128 IVIRVDQE--------EYLLPIDLIDKANVVP 151 >gi|15640661|ref|NP_230290.1| hypothetical protein VC0641 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587845|ref|ZP_01677602.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|121728393|ref|ZP_01681421.1| conserved hypothetical protein [Vibrio cholerae V52] gi|147673580|ref|YP_001216135.1| hypothetical protein VC0395_A0172 [Vibrio cholerae O395] gi|153215845|ref|ZP_01950177.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|153801997|ref|ZP_01956583.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|153818682|ref|ZP_01971349.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|153822534|ref|ZP_01975201.1| conserved hypothetical protein [Vibrio cholerae B33] gi|153826540|ref|ZP_01979207.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|153829155|ref|ZP_01981822.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|227080822|ref|YP_002809373.1| hypothetical protein VCM66_0599 [Vibrio cholerae M66-2] gi|229505737|ref|ZP_04395247.1| clustered with transcription termination protein NusA [Vibrio cholerae BX 330286] gi|229509230|ref|ZP_04398715.1| clustered with transcription termination protein NusA [Vibrio cholerae B33] gi|229512903|ref|ZP_04402370.1| clustered with transcription termination protein NusA [Vibrio cholerae TMA 21] gi|229519561|ref|ZP_04409004.1| clustered with transcription termination protein NusA [Vibrio cholerae RC9] gi|229520932|ref|ZP_04410354.1| clustered with transcription termination protein NusA [Vibrio cholerae TM 11079-80] gi|229530446|ref|ZP_04419834.1| clustered with transcription termination protein NusA [Vibrio cholerae 12129(1)] gi|229608848|ref|YP_002879496.1| hypothetical protein VCD_003770 [Vibrio cholerae MJ-1236] gi|254292207|ref|ZP_04962975.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|254850875|ref|ZP_05240225.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255744142|ref|ZP_05418095.1| UPF0090 domain-containing protein [Vibrio cholera CIRS 101] gi|262156118|ref|ZP_06029237.1| UPF0090 domain-containing protein [Vibrio cholerae INDRE 91/1] gi|262169940|ref|ZP_06037630.1| UPF0090 domain-containing protein [Vibrio cholerae RC27] gi|262189772|ref|ZP_06048123.1| UPF0090 domain-containing protein [Vibrio cholerae CT 5369-93] gi|298500757|ref|ZP_07010560.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|34223077|sp|Q9KU82|RIMP_VIBCH RecName: Full=Ribosome maturation factor rimP gi|172047699|sp|A5F924|RIMP_VIBC3 RecName: Full=Ribosome maturation factor rimP gi|254806528|sp|C3LSP6|RIMP_VIBCM RecName: Full=Ribosome maturation factor rimP gi|9655077|gb|AAF93807.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547881|gb|EAX57965.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|121629327|gb|EAX61759.1| conserved hypothetical protein [Vibrio cholerae V52] gi|124114562|gb|EAY33382.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|124122456|gb|EAY41199.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|126510762|gb|EAZ73356.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|126519952|gb|EAZ77175.1| conserved hypothetical protein [Vibrio cholerae B33] gi|146315463|gb|ABQ20002.1| conserved hypothetical protein [Vibrio cholerae O395] gi|148875344|gb|EDL73479.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|149739720|gb|EDM53927.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|150421888|gb|EDN13867.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|227008710|gb|ACP04922.1| conserved hypothetical protein [Vibrio cholerae M66-2] gi|227012466|gb|ACP08676.1| conserved hypothetical protein [Vibrio cholerae O395] gi|229332219|gb|EEN97707.1| clustered with transcription termination protein NusA [Vibrio cholerae 12129(1)] gi|229342165|gb|EEO07161.1| clustered with transcription termination protein NusA [Vibrio cholerae TM 11079-80] gi|229344250|gb|EEO09225.1| clustered with transcription termination protein NusA [Vibrio cholerae RC9] gi|229350152|gb|EEO15105.1| clustered with transcription termination protein NusA [Vibrio cholerae TMA 21] gi|229353802|gb|EEO18738.1| clustered with transcription termination protein NusA [Vibrio cholerae B33] gi|229357960|gb|EEO22877.1| clustered with transcription termination protein NusA [Vibrio cholerae BX 330286] gi|229371503|gb|ACQ61926.1| clustered with transcription termination protein NusA [Vibrio cholerae MJ-1236] gi|254846580|gb|EET24994.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255738082|gb|EET93474.1| UPF0090 domain-containing protein [Vibrio cholera CIRS 101] gi|262021674|gb|EEY40385.1| UPF0090 domain-containing protein [Vibrio cholerae RC27] gi|262030154|gb|EEY48799.1| UPF0090 domain-containing protein [Vibrio cholerae INDRE 91/1] gi|262034349|gb|EEY52738.1| UPF0090 domain-containing protein [Vibrio cholerae CT 5369-93] gi|297540538|gb|EFH76596.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|327483443|gb|AEA77850.1| hypothetical protein VCLMA_A0562 [Vibrio cholerae LMA3894-4] Length = 151 Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 81/157 (51%), Gaps = 10/157 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ +++ + + V + + ++ L+IF++ + +T+ DC E+S+ +S Sbjct: 2 TGLERQLTEMLEAPVVAAGYELVGLEFVRAGQHSTLRIFIDH-ENGITVEDCAEVSRQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ G+++K G I Sbjct: 61 AVLDVEDPISVVYNLEVSSPGLERPLFKAAHYEQFIGHEVSIVLKMAVGNRRKWKGVIQS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + E + ++ A LI Sbjct: 121 IDGETVAVMVDGQEEH--------FALSNISKANLIP 149 >gi|196247597|ref|ZP_03146299.1| protein of unknown function DUF150 [Geobacillus sp. G11MC16] gi|259585816|sp|A4IMD3|RIMP_GEOTN RecName: Full=Ribosome maturation factor rimP gi|196212381|gb|EDY07138.1| protein of unknown function DUF150 [Geobacillus sp. G11MC16] Length = 157 Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 79/159 (49%), Gaps = 6/159 (3%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQA 75 + + ++ P++ EM V I ++ KN L++F++ DD + + C +S+ Sbjct: 1 MSKKVTETVEQLVTPILNEMGLELVDIEYVKEGKNWFLRVFIDSDD-GVDIEQCGVVSEK 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LD + I +Y LEVSSPG +RP+ + DF++ G V + +++ G++ Sbjct: 60 LSEKLDEVDPIPHNYFLEVSSPGAERPLKNEKDFVKAIGKHVYIKTYEPIAGEKQFEGEL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 T L + RG + +AI ++ + SARL V Sbjct: 120 TAFDGTTVTLSVKDRG----RQKTVAIPYEKVASARLAV 154 >gi|167856226|ref|ZP_02478961.1| hypothetical protein HPS_08460 [Haemophilus parasuis 29755] gi|259585812|sp|B8F3J3|RIMP_HAEPS RecName: Full=Ribosome maturation factor rimP gi|167852646|gb|EDS23925.1| hypothetical protein HPS_08460 [Haemophilus parasuis 29755] Length = 153 Score = 134 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 78/155 (50%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + ++ I+ M F V + L +++++++ +G +T+ DC ++S+ +S I Sbjct: 4 LEQKLQELVADPIDAMGFELVGVECQRAGRFLTVRLYIDK-EGGVTVDDCSDVSRQVSAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 DVE+ I Y LEVSSPG+DRP+ + + R+ G + + + D++K G+++ Sbjct: 63 FDVEDPIADKYNLEVSSPGLDRPLFTLAHYQRFVGREIVVHLRIPMLDRRKWQGELVSVE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L+ + + A +F ++ A LI Sbjct: 123 GDLITLKVDGNLQ--------AFAFGNIQKANLIP 149 >gi|113460962|ref|YP_719029.1| hypothetical protein HS_0819 [Haemophilus somnus 129PT] gi|122945308|sp|Q0I3P7|RIMP_HAES1 RecName: Full=Ribosome maturation factor rimP gi|112823005|gb|ABI25094.1| conserved hypothetical protein [Haemophilus somnus 129PT] Length = 153 Score = 134 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 76/155 (49%), Gaps = 9/155 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 L + ++QP +E++ I +++++++ DG +T+ DC ++S+ +S + Sbjct: 4 LEDKLQELLQPSVEDLGCELWGIECQRSGRFFTVRLYIDKKDGGVTVDDCADVSRQVSAV 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG++RP+ F + G ++ + + D++K GK+ Sbjct: 64 LDVEDPIADKYNLEVSSPGLNRPLFTLKQFENYIGQDISVHLRVPMLDRRKWQGKLEKIE 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L + + + + F ++ A ++ Sbjct: 124 NDMLTLIVDNQPQVLV--------FGNIQKANVVP 150 >gi|304396346|ref|ZP_07378227.1| protein of unknown function DUF150 [Pantoea sp. aB] gi|304355855|gb|EFM20221.1| protein of unknown function DUF150 [Pantoea sp. aB] Length = 143 Score = 134 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 35/150 (23%), Positives = 74/150 (49%), Gaps = 9/150 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ ++ +E + + V I + + +L+I+++ +D + + DC ++S +S ++DVE+ Sbjct: 1 MTELVSAPVEALGYELVGIEFVRSRTSILRIYIDSED-GINVDDCADVSHQVSAVMDVED 59 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I Y LEVSSPG+DRP+ + R+ G V+ + ++ +++K G I Sbjct: 60 PITVPYNLEVSSPGLDRPLFTAEHYTRFMGEEVSLVLRMAVQNRRKWQGTIKSVDGEMIT 119 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E E + ++ A L+ Sbjct: 120 VHVEGSDEV--------FALSNIQKANLVP 141 >gi|259586217|sp|A4VPP2|RIMP_PSEU5 RecName: Full=Ribosome maturation factor rimP gi|327482027|gb|AEA85337.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166] Length = 152 Score = 134 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 76/156 (48%), Gaps = 10/156 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++ PV+E + ++ I + ++ LL+++++ + + + DCE++S+ +S +LD Sbjct: 6 EQLQALLAPVVEALGYQCWGIEFISQGRHSLLRVYIDHAN-GILIDDCEKVSRQLSGVLD 64 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I Y LEVSSPG+DRP+ ++ G V ++ ++ G + G E Sbjct: 65 VEDPISVDYTLEVSSPGMDRPLFTIEQYVAHVGDQVKIKLRSPFEGRRNFQGLLRGVEEQ 124 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 + + + + D + A +I + Sbjct: 125 DVVVLVDD--------HEYLLPIDMIDKANIIPRFD 152 >gi|261856065|ref|YP_003263348.1| hypothetical protein Hneap_1469 [Halothiobacillus neapolitanus c2] gi|261836534|gb|ACX96301.1| protein of unknown function DUF150 [Halothiobacillus neapolitanus c2] Length = 166 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 7/156 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + I +++QPV+E V + LL+++++ + +TL DC ++S A+S Sbjct: 2 QKIPESIEALLQPVVEAAGCAWVGGEFRGGPDGLLRVYIDT-EAGVTLDDCTKVSDALSG 60 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LDVE+ G YRLEVSSPG++RPM R SDF + G V + +++ G + Sbjct: 61 VLDVEDPFPGFYRLEVSSPGVERPMFRASDFALFIGQKVHVRLHRPLAQRRRFEGIVSAV 120 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L E ++ F + A L+ Sbjct: 121 DGEQISLSIEG------DQDVFTFPFSEVERANLVF 150 >gi|226329685|ref|ZP_03805203.1| hypothetical protein PROPEN_03595 [Proteus penneri ATCC 35198] gi|225202871|gb|EEG85225.1| hypothetical protein PROPEN_03595 [Proteus penneri ATCC 35198] Length = 152 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 80/159 (50%), Gaps = 9/159 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G L +++++ +E + F V + + + L+I+++ +D +T+ DC ++S Sbjct: 1 MGLSTLEQKLTAMVSAPVEALGFEFVGLEFIRGRESTLRIYIDSED-GITVDDCADVSHQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+ I+ Y LE+SSPG++RP+ + + ++ G A + ++ +++K G I Sbjct: 60 VSAVLDVEDPIQTVYNLEISSPGLERPLFTATHYEQFIGEEAAIVLRIAMQNRRKWQGII 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + + E + ++ A L+ Sbjct: 120 KSVAGEMITVTVDGKDEV--------FALSNIQKANLVP 150 >gi|89072573|ref|ZP_01159145.1| hypothetical protein SKA34_18649 [Photobacterium sp. SKA34] gi|89051677|gb|EAR57130.1| hypothetical protein SKA34_18649 [Photobacterium sp. SKA34] Length = 151 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 79/157 (50%), Gaps = 10/157 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 L ++ +++P + + F V + + + L++F++ + + + C E+S+ IS Sbjct: 2 TALETQLTEMLEPSVLALGFELVGLEFIRAGEHSTLRVFIDH-ENGINVDGCAEVSRQIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++DVE+ I Y LEVSSPG++RP+ + + + ++ GH + ++ G+++K G I+ Sbjct: 61 AVMDVEDPITVAYNLEVSSPGLERPLFKAAHYQQFVGHEANIVLKMAMGNRRKWKGDIVA 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L+ + E + + ++ A L+ Sbjct: 121 VEGELITLKVDGNEE--------SFALSNISKANLVP 149 >gi|91205426|ref|YP_537781.1| hypothetical protein RBE_0611 [Rickettsia bellii RML369-C] gi|157827029|ref|YP_001496093.1| hypothetical protein A1I_03485 [Rickettsia bellii OSU 85-389] gi|91068970|gb|ABE04692.1| unknown [Rickettsia bellii RML369-C] gi|157802333|gb|ABV79056.1| hypothetical protein A1I_03485 [Rickettsia bellii OSU 85-389] Length = 180 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 48/171 (28%), Positives = 93/171 (54%), Gaps = 10/171 (5%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVER-DDGNMTLRDCEEL 72 ++ + I+ +IQ + +M F V + + + +++I ++R DD +T+ DC + Sbjct: 10 KLIMQT-IEQQITDLIQETLSDMGFELVLVRVKGLSSKVVEILIDRLDDQKVTIEDCTKA 68 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S IS ILDVE++IE Y LEVSS G++RP+V+ ++ R+ G V ++ + + Sbjct: 69 SNTISAILDVEDLIEEAYYLEVSSSGVERPLVKFENYKRFIGREVKIKLKELLNGRSRYQ 128 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 G I+ + +L+ E ++ I++D + SA L++T+E+ + L Sbjct: 129 GTIIEAKDDKVYLKWED--------QEVIINYDLIKSANLVLTEEMFKKLL 171 >gi|53729158|ref|ZP_00133985.2| COG0779: Uncharacterized protein conserved in bacteria [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208119|ref|YP_001053344.1| hypothetical protein APL_0637 [Actinobacillus pleuropneumoniae L20] gi|165976049|ref|YP_001651642.1| hypothetical protein APJL_0628 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149947|ref|YP_001968472.1| hypothetical protein APP7_0678 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307249836|ref|ZP_07531812.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307261094|ref|ZP_07542773.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307263275|ref|ZP_07544893.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|167016737|sp|A3N003|RIMP_ACTP2 RecName: Full=Ribosome maturation factor rimP gi|226707976|sp|B0BNR3|RIMP_ACTPJ RecName: Full=Ribosome maturation factor rimP gi|226708014|sp|B3H161|RIMP_ACTP7 RecName: Full=Ribosome maturation factor rimP gi|126096911|gb|ABN73739.1| hypothetical protein APL_0637 [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165876150|gb|ABY69198.1| hypothetical protein APJL_0628 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189915078|gb|ACE61330.1| hypothetical protein APP7_0678 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306858138|gb|EFM90218.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306869226|gb|EFN01024.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871337|gb|EFN03063.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 153 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 75/155 (48%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + ++ IE M F V I L +++++++ +G +T+ DC ++S+ +S I Sbjct: 4 LEQKLEELVSDTIESMGFELVGIECQRAGRFLTVRLYIDK-EGGVTIDDCSDVSRQVSAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ + + R+ G + + + D++K GK+ Sbjct: 63 LDVEDPIADKYNLEVSSPGLDRPLFTLAHYQRFIGQEIVIHLRIPMFDRRKWQGKLESVE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L + +F ++ A L+ Sbjct: 123 GDLITLTVDNE--------TRQFAFGNIQKANLVP 149 >gi|149189796|ref|ZP_01868077.1| hypothetical protein VSAK1_11003 [Vibrio shilonii AK1] gi|148836445|gb|EDL53401.1| hypothetical protein VSAK1_11003 [Vibrio shilonii AK1] Length = 151 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 81/157 (51%), Gaps = 10/157 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ +++ +E + + V + + + L+I+++ +D +T+ C E+S +S Sbjct: 2 TGLERQLTELLEAPVEALGYELVGLEFIRAGEHSTLRIYIDHED-GITVDACAEVSHQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++DVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ G+++K G I Sbjct: 61 AVMDVEDPITVAYNLEVSSPGLERPLFKAAHYEQFIGHEVSIVLKMAVGNRRKWKGTIQS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + E ++ ++ A LI Sbjct: 121 IEGETVTIIVDGNEE--------EMALSNISKANLIP 149 >gi|332992816|gb|AEF02871.1| hypothetical protein ambt_06680 [Alteromonas sp. SN2] Length = 152 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 81/159 (50%), Gaps = 10/159 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 L ++ ++ P +E + F V I + K+ +L++F++ + +++ +C ++S +S Sbjct: 3 KLEEKLTEMLNPGVEALGFELVGIEFVRAGKHSILRVFIDH-ENGISVDNCADVSHQVSA 61 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 ILDVE+ I Y LEVSSPG+DRP+ ++ ++ G VV + + D++ GK++ Sbjct: 62 ILDVEDPISTEYNLEVSSPGMDRPLFKEKHYVDSVGEVVQVRLSMPMDDRRNFKGKVLAC 121 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 +E + Q ++ ++ ++ T E Sbjct: 122 DNGVVSIEVDG--------QQFQLAVANIEKGNVVPTFE 152 >gi|237808992|ref|YP_002893432.1| hypothetical protein Tola_2248 [Tolumonas auensis DSM 9187] gi|259645129|sp|C4L8X6|RIMP_TOLAT RecName: Full=Ribosome maturation factor rimP gi|237501253|gb|ACQ93846.1| protein of unknown function DUF150 [Tolumonas auensis DSM 9187] Length = 152 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 77/158 (48%), Gaps = 10/158 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ ++ I + + I + K+ L+++++ + +++ DC E S +S + Sbjct: 4 LEQRLTELLDAPIVALGYELWGIEFIRAGKHSTLRVYIDHAN-GISVDDCAEASHQVSAL 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+++ F R+ G V + ++ +++K G I Sbjct: 63 LDVEDPITTEYYLEVSSPGMDRPLLKPEHFARYIGQVATVTLRMAVNNRRKYKGTIKQVD 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 L + R E ++F ++ A LI + Sbjct: 123 GEMITLTIDGRDEI--------LAFANIQQANLIPNFD 152 >gi|228954093|ref|ZP_04116122.1| hypothetical protein bthur0006_34650 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229191986|ref|ZP_04318956.1| hypothetical protein bcere0002_36430 [Bacillus cereus ATCC 10876] gi|228591537|gb|EEK49386.1| hypothetical protein bcere0002_36430 [Bacillus cereus ATCC 10876] gi|228805659|gb|EEM52249.1| hypothetical protein bthur0006_34650 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 174 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 85/164 (51%), Gaps = 6/164 (3%) Query: 13 PRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEE 71 R+F D + + + QP++EE++ V + ++E + L++F++ + + + +C Sbjct: 15 RRLFMDKKVTEVVEAFAQPIVEELNLELVDVEYVKEGQDWFLRVFIDS-EKGVDIEECGA 73 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+ +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ Sbjct: 74 VSERLSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMF 133 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 GK++ T L + K +I IS D + +ARL VT Sbjct: 134 EGKLLSYDGTTITLLLTIKTRKK----EIQISMDKVANARLAVT 173 >gi|254447077|ref|ZP_05060544.1| conserved hypothetical protein [gamma proteobacterium HTCC5015] gi|198263216|gb|EDY87494.1| conserved hypothetical protein [gamma proteobacterium HTCC5015] Length = 159 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 40/154 (25%), Positives = 86/154 (55%), Gaps = 10/154 (6%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPIL 80 A S+I+PV++++ + V + + +L ++++RD+ + + DC ++S+ +S +L Sbjct: 5 ARKEWSLIEPVVQDLGYELVGVDFRANASPAVLCVYIDRDE-GVNIDDCAKISREVSAVL 63 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+DRP+ R+SDF+++ GH+ ++ + +++ G++ G + Sbjct: 64 DVEDPITSAYNLEVSSPGLDRPLFRESDFVKYKGHLAKVKLSIPYEERRNFKGQLNGVED 123 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L + + + ++ + A L+ Sbjct: 124 GMVLLIVDNE--------EYLLPYEQIEKANLVP 149 >gi|307245493|ref|ZP_07527580.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254447|ref|ZP_07536284.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258906|ref|ZP_07540637.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853552|gb|EFM85770.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862588|gb|EFM94545.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866930|gb|EFM98787.1| Ribosome maturation factor rimP [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 153 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + ++ IE M V I L +++++++ +G +T+ DC ++S+ +S I Sbjct: 4 LEQKLEELVSDTIESMGCELVGIECQRAGRFLTVRLYIDK-EGGVTIDDCSDVSRQVSAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ + + R+ G + + + D++K GK+ Sbjct: 63 LDVEDPIADKYNLEVSSPGLDRPLFTLAHYQRFIGQEIVIHLRIPMFDRRKWQGKLESVE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L + +F ++ A L+ Sbjct: 123 GDLITLTVDNEAR--------QFAFGNIQKANLVP 149 >gi|83589894|ref|YP_429903.1| hypothetical protein Moth_1046 [Moorella thermoacetica ATCC 39073] gi|91207996|sp|Q2RJM9|RIMP_MOOTA RecName: Full=Ribosome maturation factor rimP gi|83572808|gb|ABC19360.1| Protein of unknown function DUF150 [Moorella thermoacetica ATCC 39073] Length = 158 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 81/158 (51%), Gaps = 9/158 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAIS 77 L I +++P++ M + V + E +L++F++R + + L DCE++S+ +S Sbjct: 2 SKLTALIQELVEPLLTPMGYELVDLQYGREGGRYILRLFIDRPE-GIGLDDCEQVSRVVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LD ++ I Y LEVSSPG++RP+ +++DF R+ G V ++ G+++G Sbjct: 61 ALLDEKDPIPHSYYLEVSSPGLERPLKKEADFNRFAGRKVKLRTFAPINGQRHFQGRLLG 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + + E +AI + + +ARL+ Sbjct: 121 YQDGQVRMHLE-------EGWDLAIPLEQVATARLVFD 151 >gi|89095216|ref|ZP_01168139.1| YhbC-like protein [Oceanospirillum sp. MED92] gi|89080513|gb|EAR59762.1| YhbC-like protein [Oceanospirillum sp. MED92] Length = 151 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 75/161 (46%), Gaps = 13/161 (8%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELS 73 + M L + +I+P + + F I + K+ L+++++ + + + DC ++S Sbjct: 1 MSAKMKL---LHELIEPSVSALGFELWGIEFLSQGKHSTLRVYIDS-ENGINVDDCAKVS 56 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 +S I+DVE+ I G+Y LEVSSPG++RP+ F + G + + ++ ++K G Sbjct: 57 HQVSGIMDVEDPIAGNYTLEVSSPGMERPLFTLEQFAAYAGSEIQIRLRVAFEGRRKFKG 116 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + G + + + + + + A +I Sbjct: 117 VLNGVEGDDVLVVVDNE--------EYMLPIEYIDRANIIP 149 >gi|114800120|ref|YP_758845.1| hypothetical protein HNE_0111 [Hyphomonas neptunium ATCC 15444] gi|123129251|sp|Q0C5Z8|RIMP_HYPNA RecName: Full=Ribosome maturation factor rimP gi|114740294|gb|ABI78419.1| conserved hypothetical protein [Hyphomonas neptunium ATCC 15444] Length = 199 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 8/169 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDG-NMTLRDCEELS 73 + + S++QPV E + V++ + + LQI ER G + DC LS Sbjct: 1 MIVLTEQERRLLSLVQPVAEGLGMEIVRLRVQGGRRPHLQIMAERAGGAPTGIEDCARLS 60 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 + +SP+L+ + I Y LEVS+PGIDRP+ R DF RW GH V E+ +++ G Sbjct: 61 RGMSPVLEAADPISEAYTLEVSTPGIDRPLTRPGDFARWIGHAVRIELARPIDGRRRFTG 120 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS 182 I G G +E + + ++ A L++TDEL+ A+ Sbjct: 121 TITGEDNDGAHIELDDETKLVAAVHEM-------SRASLVLTDELIEAA 162 >gi|331016646|gb|EGH96702.1| ribosome maturation protein RimP [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 158 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 74/156 (47%), Gaps = 10/156 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + ++ PV+ + ++ I K+ +L+I++++ +G + + DC +S+ IS +LD Sbjct: 12 EQLQGLLAPVVVALGYQCWGIDFSSQGKHSVLRIYIDK-EGGVLVDDCAIVSRQISGVLD 70 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I Y LEVSSPG++RP+ F + G V ++ ++ G + G E Sbjct: 71 VEDPISTEYTLEVSSPGMERPLFTIEQFALYAGEQVRIKLRSPFEGRRNFQGLLRGVEEQ 130 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 + E + + D + A +I T + Sbjct: 131 DVVVHVED--------HEFLLPIDLIDKANIIPTFD 158 >gi|332141180|ref|YP_004426918.1| hypothetical protein MADE_1008910 [Alteromonas macleodii str. 'Deep ecotype'] gi|259585705|sp|B4RXT6|RIMP_ALTMD RecName: Full=Ribosome maturation factor rimP gi|327551202|gb|AEA97920.1| hypothetical protein MADE_1008910 [Alteromonas macleodii str. 'Deep ecotype'] Length = 152 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 82/159 (51%), Gaps = 10/159 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 L ++ +++P +E + F V I + K+ +L++F++ + +T+ DC ++S +S Sbjct: 3 KLEEKLTEMLEPGVEALGFELVGIEFVRAGKHSILRVFIDH-ENGITVDDCADVSHQVSA 61 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 ILDVE+ I Y LEVSSPG+DRP+ ++ ++ G VV + + D++ GK++ Sbjct: 62 ILDVEDPISTEYNLEVSSPGMDRPLFKEKHYIESVGEVVQVRLSMPMDDRRNFKGKVLAC 121 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 +E + Q ++ ++ ++ T + Sbjct: 122 ENGMVSIEVDG--------QQFQLAVANIEKGNVVPTFD 152 >gi|77165587|ref|YP_344112.1| hypothetical protein Noc_2122 [Nitrosococcus oceani ATCC 19707] gi|254434762|ref|ZP_05048270.1| conserved hypothetical protein [Nitrosococcus oceani AFC27] gi|91208399|sp|Q3J9B4|RIMP_NITOC RecName: Full=Ribosome maturation factor rimP gi|76883901|gb|ABA58582.1| Protein of unknown function DUF150 [Nitrosococcus oceani ATCC 19707] gi|207091095|gb|EDZ68366.1| conserved hypothetical protein [Nitrosococcus oceani AFC27] Length = 151 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 72/155 (46%), Gaps = 11/155 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE--EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 IS +++PV+ + + V + L K LL+I+++ +T+ DCE S IS + Sbjct: 4 DRRISELVEPVVAALGYELVGVERLSSVGKGALLRIYIDTP-SGITIDDCERASHQISAL 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE ++ Y LE+SSPG++RP+ + F R+ G + + +++ G + G Sbjct: 63 LDVEELMASAYTLEISSPGLNRPLFTEEHFKRFTGVEASITLSKPLNGRREFKGLLRGIR 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + + + ARL+ Sbjct: 123 GDRVVILVAGE--------EFELPLEGIKKARLVP 149 >gi|229086369|ref|ZP_04218546.1| hypothetical protein bcere0022_29560 [Bacillus cereus Rock3-44] gi|228696981|gb|EEL49789.1| hypothetical protein bcere0022_29560 [Bacillus cereus Rock3-44] Length = 164 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 84/164 (51%), Gaps = 6/164 (3%) Query: 13 PRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEE 71 R+F D + + + QP++EE++ V + ++ K+ L++F++ + + + +C Sbjct: 5 RRLFMDKKVTEVVEAFAQPIVEELNLELVDVEYVKEGKDWFLRVFIDS-EKGVDIEECGA 63 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+ +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ Sbjct: 64 VSERLSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMF 123 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 GK++ T L + K +I I D + +ARL VT Sbjct: 124 EGKLLSYDGTTITLLLTIKTRKK----EIQIPMDKVANARLAVT 163 >gi|320186659|gb|EFW61383.1| hypothetical protein SGF_01107 [Shigella flexneri CDC 796-83] gi|332090719|gb|EGI95813.1| hypothetical protein SB359474_3714 [Shigella boydii 3594-74] Length = 140 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 70/147 (47%), Gaps = 9/147 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I +E + F V I + L+I+++ +D + + DC ++S +S +LDVE+ I Sbjct: 1 MITAPVEALGFELVGIEFIRGHTSTLRIYIDSED-GINVDDCADVSHQVSAVLDVEDPIT 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LEVSSPG+DRP+ + R+ G V + ++ +++K G I + Sbjct: 60 VAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTV 119 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 E + E + ++ A L+ Sbjct: 120 EGKDEV--------FALSNIQKANLVP 138 >gi|209920647|ref|YP_002294731.1| hypothetical protein ECSE_3456 [Escherichia coli SE11] gi|215488488|ref|YP_002330919.1| hypothetical protein E2348C_3451 [Escherichia coli O127:H6 str. E2348/69] gi|253771994|ref|YP_003034825.1| hypothetical protein ECBD_0570 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|260845985|ref|YP_003223763.1| hypothetical protein ECO103_3919 [Escherichia coli O103:H2 str. 12009] gi|260857299|ref|YP_003231190.1| hypothetical protein ECO26_4276 [Escherichia coli O26:H11 str. 11368] gi|260869922|ref|YP_003236324.1| hypothetical protein ECO111_3994 [Escherichia coli O111:H- str. 11128] gi|261228182|ref|ZP_05942463.1| hypothetical protein EscherichiacoliO157_26753 [Escherichia coli O157:H7 str. FRIK2000] gi|261255038|ref|ZP_05947571.1| hypothetical protein EscherichiacoliO157EcO_04328 [Escherichia coli O157:H7 str. FRIK966] gi|297519523|ref|ZP_06937909.1| hypothetical protein EcolOP_17907 [Escherichia coli OP50] gi|300817578|ref|ZP_07097794.1| conserved hypothetical protein [Escherichia coli MS 107-1] gi|300823867|ref|ZP_07103991.1| conserved hypothetical protein [Escherichia coli MS 119-7] gi|300897934|ref|ZP_07116313.1| conserved hypothetical protein [Escherichia coli MS 198-1] gi|300904356|ref|ZP_07122209.1| hypothetical protein HMPREF9536_02438 [Escherichia coli MS 84-1] gi|300918925|ref|ZP_07135484.1| conserved hypothetical protein [Escherichia coli MS 115-1] gi|300926091|ref|ZP_07141909.1| hypothetical protein HMPREF9548_04117 [Escherichia coli MS 182-1] gi|300929860|ref|ZP_07145306.1| conserved hypothetical protein [Escherichia coli MS 187-1] gi|300938080|ref|ZP_07152858.1| conserved hypothetical protein [Escherichia coli MS 21-1] gi|300948820|ref|ZP_07162888.1| conserved hypothetical protein [Escherichia coli MS 116-1] gi|300955756|ref|ZP_07168101.1| hypothetical protein HMPREF9547_01616 [Escherichia coli MS 175-1] gi|300977837|ref|ZP_07174077.1| hypothetical protein HMPREF9553_01175 [Escherichia coli MS 200-1] gi|300990770|ref|ZP_07179342.1| conserved hypothetical protein [Escherichia coli MS 45-1] gi|301022025|ref|ZP_07185968.1| conserved hypothetical protein [Escherichia coli MS 69-1] gi|301025985|ref|ZP_07189467.1| conserved hypothetical protein [Escherichia coli MS 196-1] gi|301047987|ref|ZP_07195029.1| conserved hypothetical protein [Escherichia coli MS 185-1] gi|301301774|ref|ZP_07207908.1| hypothetical protein HMPREF9347_00334 [Escherichia coli MS 124-1] gi|301326407|ref|ZP_07219761.1| conserved hypothetical protein [Escherichia coli MS 78-1] gi|301644881|ref|ZP_07244853.1| conserved hypothetical protein [Escherichia coli MS 146-1] gi|306816486|ref|ZP_07450618.1| hypothetical protein ECNC101_07709 [Escherichia coli NC101] gi|307139857|ref|ZP_07499213.1| hypothetical protein EcolH7_17218 [Escherichia coli H736] gi|309785497|ref|ZP_07680128.1| conserved hypothetical protein [Shigella dysenteriae 1617] gi|309793748|ref|ZP_07688174.1| conserved hypothetical protein [Escherichia coli MS 145-7] gi|312972557|ref|ZP_07786730.1| conserved hypothetical protein [Escherichia coli 1827-70] gi|42143|emb|CAA25199.1| unnamed protein product [Escherichia coli] gi|169753506|gb|ACA76205.1| protein of unknown function DUF150 [Escherichia coli ATCC 8739] gi|209913906|dbj|BAG78980.1| conserved hypothetical protein [Escherichia coli SE11] gi|215266560|emb|CAS10999.1| predicted protein [Escherichia coli O127:H6 str. E2348/69] gi|253323038|gb|ACT27640.1| protein of unknown function DUF150 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|257755948|dbj|BAI27450.1| conserved predicted protein [Escherichia coli O26:H11 str. 11368] gi|257761132|dbj|BAI32629.1| conserved predicted protein [Escherichia coli O103:H2 str. 12009] gi|257766278|dbj|BAI37773.1| conserved predicted protein [Escherichia coli O111:H- str. 11128] gi|260447801|gb|ACX38223.1| protein of unknown function DUF150 [Escherichia coli DH1] gi|281180214|dbj|BAI56544.1| conserved hypothetical protein [Escherichia coli SE15] gi|284923194|emb|CBG36288.1| conserved hypothetical protein [Escherichia coli 042] gi|299879880|gb|EFI88091.1| conserved hypothetical protein [Escherichia coli MS 196-1] gi|300300130|gb|EFJ56515.1| conserved hypothetical protein [Escherichia coli MS 185-1] gi|300308214|gb|EFJ62734.1| hypothetical protein HMPREF9553_01175 [Escherichia coli MS 200-1] gi|300317389|gb|EFJ67173.1| hypothetical protein HMPREF9547_01616 [Escherichia coli MS 175-1] gi|300358364|gb|EFJ74234.1| conserved hypothetical protein [Escherichia coli MS 198-1] gi|300397740|gb|EFJ81278.1| conserved hypothetical protein [Escherichia coli MS 69-1] gi|300403707|gb|EFJ87245.1| hypothetical protein HMPREF9536_02438 [Escherichia coli MS 84-1] gi|300407078|gb|EFJ90616.1| conserved hypothetical protein [Escherichia coli MS 45-1] gi|300413951|gb|EFJ97261.1| conserved hypothetical protein [Escherichia coli MS 115-1] gi|300417856|gb|EFK01167.1| hypothetical protein HMPREF9548_04117 [Escherichia coli MS 182-1] gi|300451709|gb|EFK15329.1| conserved hypothetical protein [Escherichia coli MS 116-1] gi|300456940|gb|EFK20433.1| conserved hypothetical protein [Escherichia coli MS 21-1] gi|300462222|gb|EFK25715.1| conserved hypothetical protein [Escherichia coli MS 187-1] gi|300523635|gb|EFK44704.1| conserved hypothetical protein [Escherichia coli MS 119-7] gi|300529876|gb|EFK50938.1| conserved hypothetical protein [Escherichia coli MS 107-1] gi|300842755|gb|EFK70515.1| hypothetical protein HMPREF9347_00334 [Escherichia coli MS 124-1] gi|300846896|gb|EFK74656.1| conserved hypothetical protein [Escherichia coli MS 78-1] gi|301076826|gb|EFK91632.1| conserved hypothetical protein [Escherichia coli MS 146-1] gi|305850051|gb|EFM50510.1| hypothetical protein ECNC101_07709 [Escherichia coli NC101] gi|307625229|gb|ADN69533.1| hypothetical protein UM146_00520 [Escherichia coli UM146] gi|308122705|gb|EFO59967.1| conserved hypothetical protein [Escherichia coli MS 145-7] gi|308926617|gb|EFP72093.1| conserved hypothetical protein [Shigella dysenteriae 1617] gi|310332499|gb|EFP99712.1| conserved hypothetical protein [Escherichia coli 1827-70] gi|312947729|gb|ADR28556.1| hypothetical protein NRG857_15730 [Escherichia coli O83:H1 str. NRG 857C] gi|315062478|gb|ADT76805.1| conserved hypothetical protein [Escherichia coli W] gi|315257096|gb|EFU37064.1| 15 kDa protein [Escherichia coli MS 85-1] gi|315288928|gb|EFU48326.1| conserved hypothetical protein [Escherichia coli MS 110-3] gi|315294915|gb|EFU54254.1| conserved hypothetical protein [Escherichia coli MS 153-1] gi|315297878|gb|EFU57148.1| conserved hypothetical protein [Escherichia coli MS 16-3] gi|320175534|gb|EFW50630.1| hypothetical protein SDB_01982 [Shigella dysenteriae CDC 74-1112] gi|320189524|gb|EFW64183.1| hypothetical protein ECoD_04531 [Escherichia coli O157:H7 str. EC1212] gi|320202084|gb|EFW76659.1| hypothetical protein ECoL_00712 [Escherichia coli EC4100B] gi|320640242|gb|EFX09814.1| ribosome maturation protein RimP [Escherichia coli O157:H7 str. G5101] gi|320645539|gb|EFX14548.1| ribosome maturation protein RimP [Escherichia coli O157:H- str. 493-89] gi|320650849|gb|EFX19306.1| ribosome maturation protein RimP [Escherichia coli O157:H- str. H 2687] gi|320656230|gb|EFX24142.1| ribosome maturation protein RimP [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661920|gb|EFX29328.1| ribosome maturation protein RimP [Escherichia coli O55:H7 str. USDA 5905] gi|320666755|gb|EFX33734.1| ribosome maturation protein RimP [Escherichia coli O157:H7 str. LSU-61] gi|323154384|gb|EFZ40585.1| hypothetical protein ECEPECA14_3686 [Escherichia coli EPECa14] gi|323173569|gb|EFZ59198.1| hypothetical protein ECLT68_1886 [Escherichia coli LT-68] gi|323178883|gb|EFZ64459.1| hypothetical protein ECOK1180_2616 [Escherichia coli 1180] gi|323183125|gb|EFZ68523.1| hypothetical protein ECOK1357_3540 [Escherichia coli 1357] gi|324008769|gb|EGB77988.1| hypothetical protein HMPREF9532_01528 [Escherichia coli MS 57-2] gi|324012104|gb|EGB81323.1| hypothetical protein HMPREF9533_03857 [Escherichia coli MS 60-1] gi|324018306|gb|EGB87525.1| hypothetical protein HMPREF9542_03022 [Escherichia coli MS 117-3] gi|326337872|gb|EGD61706.1| hypothetical protein ECF_05498 [Escherichia coli O157:H7 str. 1125] gi|326347441|gb|EGD71166.1| hypothetical protein ECoA_00752 [Escherichia coli O157:H7 str. 1044] gi|330909226|gb|EGH37740.1| clustered with transcription termination protein NusA [Escherichia coli AA86] gi|332086489|gb|EGI91636.1| hypothetical protein SD15574_3713 [Shigella dysenteriae 155-74] gi|332345127|gb|AEE58461.1| conserved hypothetical protein [Escherichia coli UMNK88] gi|332754726|gb|EGJ85092.1| hypothetical protein SF274771_3795 [Shigella flexneri 2747-71] gi|332765167|gb|EGJ95394.1| ribosome maturation protein [Shigella flexneri 2930-71] gi|332998812|gb|EGK18408.1| hypothetical protein SFVA6_4094 [Shigella flexneri VA-6] gi|332999249|gb|EGK18835.1| hypothetical protein SFK272_3978 [Shigella flexneri K-272] gi|333000398|gb|EGK19981.1| hypothetical protein SFK218_4200 [Shigella flexneri K-218] gi|333014539|gb|EGK33886.1| hypothetical protein SFK304_4023 [Shigella flexneri K-304] Length = 140 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 71/147 (48%), Gaps = 9/147 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I +E + F V I + + L+I+++ +D + + DC ++S +S +LDVE+ I Sbjct: 1 MITAPVEALGFELVGIEFIRGRTSTLRIYIDSED-GINVDDCADVSHQVSAVLDVEDPIT 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LEVSSPG+DRP+ + R+ G V + ++ +++K G I + Sbjct: 60 VAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTV 119 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 E + E + ++ A L+ Sbjct: 120 EGKDEV--------FALSNIQKANLVP 138 >gi|270158100|ref|ZP_06186757.1| conserved hypothetical protein [Legionella longbeachae D-4968] gi|289163635|ref|YP_003453773.1| hypothetical protein LLO_0291 [Legionella longbeachae NSW150] gi|269990125|gb|EEZ96379.1| conserved hypothetical protein [Legionella longbeachae D-4968] gi|288856808|emb|CBJ10619.1| putative conserved hypothetical protein [Legionella longbeachae NSW150] Length = 147 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 80/153 (52%), Gaps = 10/153 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + ++ ++ P I +M + + ++ LL+I++++ D +T+ DCE +S +S + Sbjct: 2 IQDELEHLLAPSIADMGYELWGCEYLSQGRHSLLRIYIDKSD-GITIDDCEAVSHQVSAL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I G+Y LEVSSPGI RP+ + + R+ G V + K+KL+G ++ S Sbjct: 61 LDVEDPIHGNYSLEVSSPGIPRPLFKSWQYQRYLGQEVQVKTFKPVCGKRKLLGTLVSAS 120 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ET L + + F +++ A L Sbjct: 121 ETSIVLNLGNEDQ--------ELLFSNIVKASL 145 >gi|260771816|ref|ZP_05880734.1| UPF0090 domain-containing protein [Vibrio metschnikovii CIP 69.14] gi|260613108|gb|EEX38309.1| UPF0090 domain-containing protein [Vibrio metschnikovii CIP 69.14] Length = 151 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 77/157 (49%), Gaps = 10/157 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ +++ + + V + + + L+I+++ + +T+ C E+S +S Sbjct: 2 TGLERQLTEMLEAPVAATGYELVGLEFVRAGEHSTLRIYIDH-ENGITVDACAEVSHQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ +++K G I Sbjct: 61 AVLDVEDPITVAYNLEVSSPGLERPLFKAAHYEQFIGHEVSIVLKMAVANRRKWKGIIHA 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + E + ++ A LI Sbjct: 121 VEGETVTVIADGQEEY--------FALSNIAKANLIP 149 >gi|149375757|ref|ZP_01893525.1| hypothetical protein MDG893_04092 [Marinobacter algicola DG893] gi|149359882|gb|EDM48338.1| hypothetical protein MDG893_04092 [Marinobacter algicola DG893] Length = 153 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 81/156 (51%), Gaps = 9/156 (5%) Query: 23 GDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++P++E + + I + + LL+IF++ + + + DCE++S+ S ++D Sbjct: 6 KQLEELLRPIVEGLGYEFWGIEFRSQGHHSLLRIFIDDAENGIGIEDCEKVSRQASGVMD 65 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I+ Y LEVSSPG+DRP+ R + + GH V ++ ++ ++K G I G Sbjct: 66 VEDPIQTEYTLEVSSPGMDRPLFRLEQYEAFAGHQVQIKLRMAFEGRRKFQGLIKGIEG- 124 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 +++ + + FDS+ A ++ E Sbjct: 125 -------DDVVVVVDDHEYLLPFDSIEKANIVPVFE 153 >gi|326794268|ref|YP_004312088.1| ribosome maturation factor rimP [Marinomonas mediterranea MMB-1] gi|326545032|gb|ADZ90252.1| Ribosome maturation factor rimP [Marinomonas mediterranea MMB-1] Length = 153 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 43/152 (28%), Positives = 82/152 (53%), Gaps = 10/152 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERD-DGNMTLRDCEELSQAISPILDV 82 I +I+PV+E + F+ + + K+ +L+IF+E D + + + DC ++S+ +S ILDV Sbjct: 8 IEELIRPVVEGLGFQFWGMEYISQGKHSVLRIFIETDKEKGIDVEDCAQVSRQVSSILDV 67 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ I G Y LEVSSPG+DRP+ S + + G VVA ++ + ++K G++ G Sbjct: 68 EDPITGEYNLEVSSPGLDRPLFELSQYESYVGSVVALKLRVPFDGRRKFKGQLTGVEGDE 127 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + ++ + + + + A ++ Sbjct: 128 VVILVDQE--------EYLLPIELIEKANIVP 151 >gi|261212248|ref|ZP_05926534.1| UPF0090 domain-containing protein [Vibrio sp. RC341] gi|260838856|gb|EEX65507.1| UPF0090 domain-containing protein [Vibrio sp. RC341] Length = 151 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 80/157 (50%), Gaps = 10/157 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ +++ + + V + + ++ L+IF++ + +T+ DC E+S+ +S Sbjct: 2 TGLERQLTEMLEAPVVAAGYELVGLEFVRAGQHSTLRIFIDH-ENGITVEDCAEVSRQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ +++K G I Sbjct: 61 AVLDVEDPISVVYNLEVSSPGLERPLFKAAHYEQFIGHEVSIVLKMAVANRRKWKGFIQA 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + E + ++ A LI Sbjct: 121 IDGETVAVMVDGQEEH--------FALSNISKANLIP 149 >gi|254295402|ref|YP_003061425.1| hypothetical protein Hbal_3060 [Hirschia baltica ATCC 49814] gi|254043933|gb|ACT60728.1| protein of unknown function DUF150 [Hirschia baltica ATCC 49814] Length = 203 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 7/172 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + I +I+P + V++ ++ +LQI E+ DG M + DC +LS+AI P Sbjct: 5 SEIEKRILDIIEPEATSIGLEIVRVRMMGANTPILQIMAEKPDGTMDVEDCAKLSRAIGP 64 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LDVE+ I Y LEVSSPGIDRP+ R+ DF W + V E+ + +++ G I Sbjct: 65 VLDVEDPIHSEYNLEVSSPGIDRPLTREGDFANWKTYEVRIELGIPIDGRRRFHGTITDE 124 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYA 190 L+ + + IS ++ A L++ D L+ + + + Sbjct: 125 VNGIVSLDLKDGSKA-------EISIVDMVKASLVMNDRLIEEAQSRGQAPE 169 >gi|254427945|ref|ZP_05041652.1| conserved hypothetical protein [Alcanivorax sp. DG881] gi|196194114|gb|EDX89073.1| conserved hypothetical protein [Alcanivorax sp. DG881] Length = 151 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 79/156 (50%), Gaps = 9/156 (5%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 ++ ++ PV+E++ F + ++ + +L++F++ D +++ +C +S +S +LD Sbjct: 5 TEQLTELLAPVVEDLGFVLWGVEYIQGRGAVLRVFIDHAD-GISVDNCAAVSHEVSGVLD 63 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I G Y LEVSSPG+DRPM + ++ + G V +++ K+K+ I+ Sbjct: 64 VEDPISGEYNLEVSSPGMDRPMFEIAQYVDYIGEDVQLKLLAPVSGKRKMTAAIVAVDGD 123 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 +E + + + + + ARL + Sbjct: 124 TLVVELDGE--------TLRVPYSQVDRARLQPRFD 151 >gi|260771175|ref|ZP_05880102.1| UPF0090 domain-containing protein [Vibrio furnissii CIP 102972] gi|260613772|gb|EEX38964.1| UPF0090 domain-containing protein [Vibrio furnissii CIP 102972] gi|315179219|gb|ADT86133.1| hypothetical protein vfu_A00938 [Vibrio furnissii NCTC 11218] Length = 151 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 82/157 (52%), Gaps = 10/157 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ ++ + + V + + ++ L+I+++ + +T+ DC E+S +S Sbjct: 2 TGLERQLTEMLDAPVVASGYELVGLEFVRAGQHSTLRIYIDH-ENGITVDDCAEVSHQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ G+++K G+I+G Sbjct: 61 AVLDVEDPITVAYNLEVSSPGLERPLFKAAHYEQFKGHEVSIVLKMAVGNRRKWKGEILG 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + E + ++ A LI Sbjct: 121 ADGETINVMVDGQEEH--------FALSNISKANLIP 149 >gi|258620311|ref|ZP_05715349.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|258624682|ref|ZP_05719616.1| UPF0090 protein [Vibrio mimicus VM603] gi|262163945|ref|ZP_06031684.1| UPF0090 domain-containing protein [Vibrio mimicus VM223] gi|262172283|ref|ZP_06039961.1| UPF0090 domain-containing protein [Vibrio mimicus MB-451] gi|258582969|gb|EEW07784.1| UPF0090 protein [Vibrio mimicus VM603] gi|258587190|gb|EEW11901.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|261893359|gb|EEY39345.1| UPF0090 domain-containing protein [Vibrio mimicus MB-451] gi|262027473|gb|EEY46139.1| UPF0090 domain-containing protein [Vibrio mimicus VM223] Length = 151 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 80/157 (50%), Gaps = 10/157 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ +++ + + V + + ++ L+IF++ + +T+ DC E+S+ +S Sbjct: 2 TGLERQLTEMLEAPVVAAGYELVGLEFVRAGQHSTLRIFIDH-ENGITVEDCAEVSRQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I Y LEVSSPG++RP+ + + + ++ GH V+ + ++ +++K G I Sbjct: 61 AVLDVEDPISVVYNLEVSSPGLERPLFKAAHYEQFIGHEVSIVLKMAVANRRKWKGIIQS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + E + ++ A LI Sbjct: 121 IEGETVAVMVDGQEEH--------FALSNISKANLIP 149 >gi|258516335|ref|YP_003192557.1| hypothetical protein Dtox_3192 [Desulfotomaculum acetoxidans DSM 771] gi|257780040|gb|ACV63934.1| protein of unknown function DUF150 [Desulfotomaculum acetoxidans DSM 771] Length = 153 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 48/161 (29%), Positives = 84/161 (52%), Gaps = 10/161 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQ 74 LA + ++ PV+EEM+ V + ++E + L+IF+++ G + + DC+ +SQ Sbjct: 1 MAKNKLADIVEGLVAPVVEEMAMELVDVEYVKEGSQWYLRIFIDK-TGGIFVDDCQAVSQ 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 +S ++D ++ I Y LEVSSPG+DRP+ + +D+ R+ G+ V K+ G+ Sbjct: 60 KVSRLMDEKDPIPHAYILEVSSPGLDRPLKKAADYERFCGYEVVVTTYAPFNGKKSFSGR 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + G SE G + + + I D + SARL V Sbjct: 120 LDGLSEQGVIINVDG--------TEYVIPVDQVASARLAVD 152 >gi|297580767|ref|ZP_06942693.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|297535183|gb|EFH74018.1| conserved hypothetical protein [Vibrio cholerae RC385] Length = 151 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 81/157 (51%), Gaps = 10/157 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ +++ + + V + + ++ L+IF++ + +T+ DC E+S+ +S Sbjct: 2 TGLERQLTEMLEAPVVAAGYELVGLEFVRAGQHSTLRIFIDH-ENGITVEDCAEVSRQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I Y LEVSSPG+++P+ + + + ++ GH V+ + ++ G+++K G I Sbjct: 61 AVLDVEDPISVVYNLEVSSPGLEKPLFKAAHYEQFIGHEVSIVLKMAVGNRRKWKGVIQS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + E + ++ A LI Sbjct: 121 IDGETVAVMVDGQEEH--------FALSNISKANLIP 149 >gi|284006666|emb|CBA71928.1| conserved hypothetical protein [Arsenophonus nasoniae] Length = 150 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 78/154 (50%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++S+I +E + F V + + + L+++++ + +T+ DC ++S +S +L Sbjct: 4 LEQKLTSMISVPVEALGFEFVGLEFIRARVSTLRVYIDN-ENGVTVDDCADVSHQVSAVL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LE+SSPG++RP+ + + R+ G V + ++ +++K G I ++ Sbjct: 63 DVEDPISVLYNLEISSPGLERPLFTVAHYQRFIGKEVNLILRIAMQNRRKWQGIIKAVND 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + E + ++ A L+ Sbjct: 123 EMITVTVDGKDEV--------FALKNIQKANLVP 148 >gi|127513757|ref|YP_001094954.1| hypothetical protein Shew_2829 [Shewanella loihica PV-4] gi|126639052|gb|ABO24695.1| protein of unknown function DUF150 [Shewanella loihica PV-4] Length = 161 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 74/161 (45%), Gaps = 10/161 (6%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEEL 72 R L + ++ +E + + + K+ +L+++++ + + + DC ++ Sbjct: 7 RGVTLATLESKLEQMLIAPVEALGHSLWGLEYVQAGKHSVLRVYIDN-ENGIFIDDCADV 65 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+ IS +LDVE+ I Y LEVSSPG+DRP+ + R+ G V ++ + + L Sbjct: 66 SRQISAVLDVEDPISTEYTLEVSSPGVDRPLFTAEQYARYLGETVKVQLTMPVAGSRNLK 125 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 G + G L + ++ I+ D++ LI Sbjct: 126 GTVAGVEGQMLTLTVDG--------NELIIALDNIRKGNLI 158 >gi|228916454|ref|ZP_04080020.1| hypothetical protein bthur0012_36690 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228928865|ref|ZP_04091897.1| hypothetical protein bthur0010_35570 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935131|ref|ZP_04097958.1| hypothetical protein bthur0009_35840 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947536|ref|ZP_04109826.1| hypothetical protein bthur0007_36640 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228986960|ref|ZP_04147086.1| hypothetical protein bthur0001_36350 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229092857|ref|ZP_04223991.1| hypothetical protein bcere0021_36040 [Bacillus cereus Rock3-42] gi|229123330|ref|ZP_04252534.1| hypothetical protein bcere0016_36190 [Bacillus cereus 95/8201] gi|229140458|ref|ZP_04269013.1| hypothetical protein bcere0013_35570 [Bacillus cereus BDRD-ST26] gi|229157393|ref|ZP_04285471.1| hypothetical protein bcere0010_35760 [Bacillus cereus ATCC 4342] gi|229186054|ref|ZP_04313224.1| hypothetical protein bcere0004_36010 [Bacillus cereus BGSC 6E1] gi|229197927|ref|ZP_04324643.1| hypothetical protein bcere0001_34630 [Bacillus cereus m1293] gi|228585645|gb|EEK43747.1| hypothetical protein bcere0001_34630 [Bacillus cereus m1293] gi|228597473|gb|EEK55123.1| hypothetical protein bcere0004_36010 [Bacillus cereus BGSC 6E1] gi|228626120|gb|EEK82869.1| hypothetical protein bcere0010_35760 [Bacillus cereus ATCC 4342] gi|228643019|gb|EEK99295.1| hypothetical protein bcere0013_35570 [Bacillus cereus BDRD-ST26] gi|228660106|gb|EEL15742.1| hypothetical protein bcere0016_36190 [Bacillus cereus 95/8201] gi|228690479|gb|EEL44262.1| hypothetical protein bcere0021_36040 [Bacillus cereus Rock3-42] gi|228772738|gb|EEM21178.1| hypothetical protein bthur0001_36350 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228812056|gb|EEM58387.1| hypothetical protein bthur0007_36640 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824496|gb|EEM70301.1| hypothetical protein bthur0009_35840 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830672|gb|EEM76277.1| hypothetical protein bthur0010_35570 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843033|gb|EEM88115.1| hypothetical protein bthur0012_36690 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 164 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 84/164 (51%), Gaps = 6/164 (3%) Query: 13 PRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEE 71 R+F D + + + QP++EE++ V + ++E + L++F++ + + + +C Sbjct: 5 RRLFMDKKVTEVVEAFAQPIVEELNLELVDVEYVKEGQDWFLRVFIDS-EKGVDIEECGA 63 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+ +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ Sbjct: 64 VSERLSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMF 123 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 GK++ T L + K +I I D + +ARL VT Sbjct: 124 EGKMLSYDGTTITLLLTIKTRKK----EIQIPMDKVANARLAVT 163 >gi|26991397|ref|NP_746822.1| hypothetical protein PP_4714 [Pseudomonas putida KT2440] gi|148549781|ref|YP_001269883.1| hypothetical protein Pput_4579 [Pseudomonas putida F1] gi|259586189|sp|A5W989|RIMP_PSEP1 RecName: Full=Ribosome maturation factor rimP gi|24986466|gb|AAN70286.1|AE016669_4 conserved hypothetical protein [Pseudomonas putida KT2440] gi|148513839|gb|ABQ80699.1| protein of unknown function DUF150 [Pseudomonas putida F1] gi|313500622|gb|ADR61988.1| Ribosome maturation factor rimP [Pseudomonas putida BIRD-1] Length = 169 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 85/174 (48%), Gaps = 12/174 (6%) Query: 5 HFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGN 63 +LHS +E + +++ PV+E + ++ I + K+ +L+I++++ +G Sbjct: 7 FYLHSMHEG--VQVSSKLEQLQALLAPVVEGLGYQCWGIEYVSQGKHSVLRIYIDK-EGG 63 Query: 64 MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVL 123 + + DCE +S+ S ILDVE+ I Y LEVSSPG+DRP+ F G V ++ Sbjct: 64 ILVDDCEAVSRQASAILDVEDPISSEYTLEVSSPGMDRPLFTLEQFASHAGEQVKIKLRS 123 Query: 124 SSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 ++ G + G +E+ ++ + + DS+ A +I + + Sbjct: 124 PFEGRRNFQGLLRG--------VEEQDVVVQVDNQEFLLPIDSIDKANIIPSFD 169 >gi|54307813|ref|YP_128833.1| hypothetical protein PBPRA0610 [Photobacterium profundum SS9] gi|90412483|ref|ZP_01220486.1| hypothetical protein P3TCK_13963 [Photobacterium profundum 3TCK] gi|51316622|sp|Q6LUJ4|RIMP_PHOPR RecName: Full=Ribosome maturation factor rimP gi|46912236|emb|CAG19031.1| conserved hypothetical protein [Photobacterium profundum SS9] gi|90326520|gb|EAS42926.1| hypothetical protein P3TCK_13963 [Photobacterium profundum 3TCK] Length = 151 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 76/157 (48%), Gaps = 10/157 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 L ++ +++ + + V + + + L++FV+ + + + DC E S+ IS Sbjct: 2 TALEMQLTELLEASVNASGYELVGLEFIRAGEHSTLRVFVDH-ENGINVEDCAEASRQIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++DVE+ I Y LEVSSPG++RP+ + + + ++ GH V + ++ +++K G I+ Sbjct: 61 AVMDVEDPITVAYHLEVSSPGLERPLFKAAHYQQFVGHEVNLVLKMAMNNRRKWKGDIVA 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L+ + E + ++ A LI Sbjct: 121 VEGELITLKVDGNDE--------TFALSNISKANLIP 149 >gi|300113655|ref|YP_003760230.1| hypothetical protein Nwat_0966 [Nitrosococcus watsonii C-113] gi|299539592|gb|ADJ27909.1| protein of unknown function DUF150 [Nitrosococcus watsonii C-113] Length = 151 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 11/155 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE--EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 IS ++ PV+ + + V + L K +LL+I+++ +T+ DCE S IS + Sbjct: 4 DKRISKLVGPVVAALGYELVGVERLSSVGKGVLLRIYIDAP-SGVTVNDCERTSHQISAL 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE + Y LE+SSPG+DRP+ + F R+ G + + +++ G + G Sbjct: 63 LDVEEPMASAYTLEISSPGLDRPLFTEEHFKRFTGVEASITLSEPLNGRREFKGLLQGIR 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + + + ARLI Sbjct: 123 GDRVVILVAGE--------EFELPLEGIKKARLIP 149 >gi|294634513|ref|ZP_06713048.1| hypothetical protein EDWATA_00308 [Edwardsiella tarda ATCC 23685] gi|291092027|gb|EFE24588.1| hypothetical protein EDWATA_00308 [Edwardsiella tarda ATCC 23685] Length = 140 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 72/147 (48%), Gaps = 9/147 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I +E + F V I + ++ L+I+++ ++ +T+ DC ++S +S +LDVE+ I Sbjct: 1 MITAPVEALGFELVGIEFIRGRHSTLRIYIDSEE-GITVDDCADVSHQVSAVLDVEDPIS 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LEVSSPG+DRP+ + R+ V + ++ +++K G I + Sbjct: 60 VAYNLEVSSPGMDRPLFTAEHYTRFLNEEVTLVLRMAMQNRRKWQGVIKAVDGEMITVTV 119 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 + + E + ++ A L+ Sbjct: 120 DGKDEV--------FALSNVQKANLVP 138 >gi|78358200|ref|YP_389649.1| hypothetical protein Dde_3160 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|91208345|sp|Q30WJ2|RIMP_DESDG RecName: Full=Ribosome maturation factor rimP gi|78220605|gb|ABB39954.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 173 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 39/165 (23%), Positives = 74/165 (44%), Gaps = 4/165 (2%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 + + +I PVI + ++ +L+I+++ D +T+ C +S+ Sbjct: 3 MTVTTIHEQLLEIITPVIRSFDLELWGMDFIQGGKAVLRIYIDGPD-GVTIDQCATVSRH 61 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS---GDKQKLI 132 I L+VE+II G Y LEVSSPG++RP+ + + GH + ++K Sbjct: 62 IGLALEVEDIIAGAYNLEVSSPGLERPLFSAAQLAAYKGHKAELVLRAPCAQFPGRKKFT 121 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 G + F L+ + D + +++ +D + ARLI + Sbjct: 122 GVVGNVEGENFTLQIDPLKGGDNLQEELSAHWDDVKKARLIYDFD 166 >gi|295696155|ref|YP_003589393.1| protein of unknown function DUF150 [Bacillus tusciae DSM 2912] gi|295411757|gb|ADG06249.1| protein of unknown function DUF150 [Bacillus tusciae DSM 2912] Length = 154 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 9/160 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 +A + + +P++E V + ++ N L++FV+R +G + + DC +S+ Sbjct: 1 MAKKRIAAVVEEIARPIVEGEGLELVDVEYVKEGANWFLRVFVDRPEGGVDIDDCSRVSE 60 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 +S LD + I G Y LEVSSPGI+RP+ F R G V ++ G Sbjct: 61 RLSDRLDEIDPIPGSYFLEVSSPGIERPLKNMPAFRRALGQTVVVTTYEPVQGRKSFQGL 120 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + G + ++ I + ++ SAR + Sbjct: 121 LTEVDDEGIAVAD--------GDVVWTIPYRAVASARTVF 152 >gi|239997163|ref|ZP_04717687.1| hypothetical protein AmacA2_22177 [Alteromonas macleodii ATCC 27126] Length = 152 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 82/159 (51%), Gaps = 10/159 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 L ++ +++P +E + F V I + K+ +L++F++ + +T+ DC ++S +S Sbjct: 3 KLEEKLTEMLEPGVEALGFELVGIEFVRAGKHSILRVFIDH-ENGITVDDCADVSHQVSA 61 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 ILDVE+ I Y LEVSSPG+DRP+ ++ ++ G VV + + D++ GK++ Sbjct: 62 ILDVEDPISTEYNLEVSSPGMDRPLFKEKHYIESVGEVVQIRLSMPMDDRRNFKGKVLAC 121 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 +E + Q ++ ++ ++ T + Sbjct: 122 ENGIVSIEVDG--------QQFQLAVANIEKGNVVPTFD 152 >gi|228902320|ref|ZP_04066477.1| hypothetical protein bthur0014_34980 [Bacillus thuringiensis IBL 4222] gi|228909641|ref|ZP_04073464.1| hypothetical protein bthur0013_37930 [Bacillus thuringiensis IBL 200] gi|228940905|ref|ZP_04103464.1| hypothetical protein bthur0008_35450 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228966762|ref|ZP_04127806.1| hypothetical protein bthur0004_35680 [Bacillus thuringiensis serovar sotto str. T04001] gi|228973834|ref|ZP_04134410.1| hypothetical protein bthur0003_35890 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980423|ref|ZP_04140733.1| hypothetical protein bthur0002_35910 [Bacillus thuringiensis Bt407] gi|229098286|ref|ZP_04229233.1| hypothetical protein bcere0020_35200 [Bacillus cereus Rock3-29] gi|229104379|ref|ZP_04235048.1| hypothetical protein bcere0019_35270 [Bacillus cereus Rock3-28] gi|229117303|ref|ZP_04246681.1| hypothetical protein bcere0017_35830 [Bacillus cereus Rock1-3] gi|229162753|ref|ZP_04290710.1| hypothetical protein bcere0009_35230 [Bacillus cereus R309803] gi|228620635|gb|EEK77504.1| hypothetical protein bcere0009_35230 [Bacillus cereus R309803] gi|228666203|gb|EEL21667.1| hypothetical protein bcere0017_35830 [Bacillus cereus Rock1-3] gi|228679077|gb|EEL33285.1| hypothetical protein bcere0019_35270 [Bacillus cereus Rock3-28] gi|228685184|gb|EEL39115.1| hypothetical protein bcere0020_35200 [Bacillus cereus Rock3-29] gi|228779243|gb|EEM27500.1| hypothetical protein bthur0002_35910 [Bacillus thuringiensis Bt407] gi|228785859|gb|EEM33862.1| hypothetical protein bthur0003_35890 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228792861|gb|EEM40419.1| hypothetical protein bthur0004_35680 [Bacillus thuringiensis serovar sotto str. T04001] gi|228818741|gb|EEM64807.1| hypothetical protein bthur0008_35450 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228849930|gb|EEM94761.1| hypothetical protein bthur0013_37930 [Bacillus thuringiensis IBL 200] gi|228857289|gb|EEN01792.1| hypothetical protein bthur0014_34980 [Bacillus thuringiensis IBL 4222] Length = 164 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 84/164 (51%), Gaps = 6/164 (3%) Query: 13 PRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEE 71 R+F D + + + QP++EE++ V + ++E + L++F++ + + + +C Sbjct: 5 RRLFMDKKVTEVVEAFAQPIVEELNLELVDVEYVKEGQDWFLRVFIDS-EKGVDIEECGA 63 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+ +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ Sbjct: 64 VSERLSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMF 123 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 GK++ T L + K +I I D + +ARL VT Sbjct: 124 EGKLLSYDGTTITLLLTIKTRKK----EIQIPMDKVANARLAVT 163 >gi|283836284|ref|ZP_06356025.1| hypothetical protein CIT292_10732 [Citrobacter youngae ATCC 29220] gi|291067647|gb|EFE05756.1| hypothetical protein CIT292_10732 [Citrobacter youngae ATCC 29220] Length = 140 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 72/147 (48%), Gaps = 9/147 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I +E + + V I + + L+I+++ +D + + DC ++S +S ++DVE+ I Sbjct: 1 MITAPVEALGYELVGIEFIRGRTSTLRIYIDSED-GINVDDCADVSHQVSAVMDVEDPIT 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LEVSSPG+DRP+ ++R+ G V + ++ +++K G I + Sbjct: 60 VAYNLEVSSPGLDRPLFTAEHYVRFLGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTV 119 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 E + E + ++ A L+ Sbjct: 120 EGKDEV--------FALSNIQKANLVP 138 >gi|94497166|ref|ZP_01303738.1| hypothetical protein SKA58_13228 [Sphingomonas sp. SKA58] gi|94423271|gb|EAT08300.1| hypothetical protein SKA58_13228 [Sphingomonas sp. SKA58] Length = 196 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 53/180 (29%), Positives = 82/180 (45%), Gaps = 12/180 (6%) Query: 9 SKYEPRIFGD---MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERD-DGN 63 E R+ M ++++I+P ++ + F V+I L + LQI E Sbjct: 10 GDAEARMIVSGDCMADIAALTALIEPEVQALGFDLVRIKLFGSGDDYTLQIMAENPRTKQ 69 Query: 64 MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVL 123 + + DC +S+ +S +LD + IE YRLEVSSPGIDRP+ R DF W GH Sbjct: 70 LVIEDCATISRRLSDVLDEADPIEEAYRLEVSSPGIDRPLTRLHDFQEWAGHEAKIGASE 129 Query: 124 SSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 ++ G + G K G + I F + A+L++TD L+ AS+ Sbjct: 130 IVSGRKSFRGVVNGVDGEEILFTDAKSG-------DVRIPFALVDEAKLLLTDALIAASM 182 >gi|229174483|ref|ZP_04302015.1| hypothetical protein bcere0006_35760 [Bacillus cereus MM3] gi|228609043|gb|EEK66333.1| hypothetical protein bcere0006_35760 [Bacillus cereus MM3] Length = 164 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 84/164 (51%), Gaps = 6/164 (3%) Query: 13 PRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEE 71 R+F D + + + QP++EE++ V + ++E + L++F++ + + + +C Sbjct: 5 RRLFMDKKVTEVVEAFAQPIVEELNLELVDVEYVQEGQDWFLRVFIDS-EKGVDIEECGA 63 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+ +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ Sbjct: 64 VSERLSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMF 123 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 GK++ T L + K +I I D + +ARL VT Sbjct: 124 EGKLLSYDGTTITLLLTIKTRKK----EIQIPMDKVANARLAVT 163 >gi|104780026|ref|YP_606524.1| hypothetical protein PSEEN0793 [Pseudomonas entomophila L48] gi|259586182|sp|Q1IF45|RIMP_PSEE4 RecName: Full=Ribosome maturation factor rimP gi|95109013|emb|CAK13709.1| conserved hypothetical protein [Pseudomonas entomophila L48] Length = 169 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 85/174 (48%), Gaps = 12/174 (6%) Query: 5 HFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGN 63 +LHS +E + +++ PV+E + ++ I + K+ +L+I++++ +G Sbjct: 7 FYLHSMHEG--VQVSSKLEQLQALLAPVVEGLGYQCWGIEYVSQGKHSVLRIYIDK-EGG 63 Query: 64 MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVL 123 + + DCE +S+ S ILDVE+ I Y LEVSSPG+DRP+ F G V ++ Sbjct: 64 ILVDDCEAVSRQASAILDVEDPISSEYTLEVSSPGMDRPLFTLEQFASHAGEQVKIKLRT 123 Query: 124 SSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 ++ G + G +E+ ++ + + DS+ A +I + + Sbjct: 124 PFEGRRNFQGLLRG--------VEEQDVVVQVDNHEFLLPIDSIDKANIIPSFD 169 >gi|120556257|ref|YP_960608.1| hypothetical protein Maqu_3350 [Marinobacter aquaeolei VT8] gi|166990772|sp|A1U602|RIMP_MARAV RecName: Full=Ribosome maturation factor rimP gi|120326106|gb|ABM20421.1| protein of unknown function DUF150 [Marinobacter aquaeolei VT8] Length = 153 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 81/156 (51%), Gaps = 9/156 (5%) Query: 23 GDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++PV+E + + I + L++F++ + + + DCE++S+ +S ++D Sbjct: 6 KQLEDILRPVVEGLGYEFWGIEFRSHGHHSKLRVFIDDAENGIAIDDCEKVSRQVSGVMD 65 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I+ Y LEVSSPG+DRP+ R + + GH V ++ ++ ++K +G I G Sbjct: 66 VEDPIQTEYTLEVSSPGMDRPLFRLEQYEAFIGHKVQIKLRMAFEGRRKFLGLIKGVEG- 124 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 +++ + + FDS+ A ++ E Sbjct: 125 -------DDVVVVVDDHEYLLPFDSIEKANIVPVFE 153 >gi|157085946|gb|ABV15624.1| hypothetical protein CKO_04571 [Citrobacter koseri ATCC BAA-895] Length = 140 Score = 132 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 71/147 (48%), Gaps = 9/147 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I +E + + V I + + L+I+++ +D + + DC ++S +S +LDVE+ I Sbjct: 1 MITAPVEALGYELVGIEFIRGRTSTLRIYIDSED-GINVDDCADVSHQVSAVLDVEDPIT 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LEVSSPG+DRPM + R+ G V + ++ +++K G I + Sbjct: 60 VAYNLEVSSPGLDRPMFTAEHYARFLGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTV 119 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 E + E + ++ A L+ Sbjct: 120 EGKDEV--------FALSNIQKANLVP 138 >gi|197364150|ref|YP_002143787.1| hypothetical protein SSPA2946 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|207858538|ref|YP_002245189.1| hypothetical protein SEN3123 [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224585086|ref|YP_002638885.1| hypothetical protein SPC_3359 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238910083|ref|ZP_04653920.1| hypothetical protein SentesTe_02955 [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289825803|ref|ZP_06544971.1| hypothetical protein Salmonellentericaenterica_10351 [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25302491|pir||AB0902 conserved hypothetical protein STY3469 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16421847|gb|AAL22160.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16504356|emb|CAD07808.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29139176|gb|AAO70744.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56129477|gb|AAV78983.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|160867493|gb|ABX24116.1| hypothetical protein SARI_04336 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|161365658|gb|ABX69426.1| hypothetical protein SPAB_04100 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|197095627|emb|CAR61195.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|206710341|emb|CAR34699.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224469614|gb|ACN47444.1| hypothetical protein SPC_3359 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261248454|emb|CBG26291.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|301159838|emb|CBW19357.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914314|dbj|BAJ38288.1| hypothetical protein STMDT12_C33450 [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225972|gb|EFX51026.1| clustered with transcription termination protein NusA [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|332990146|gb|AEF09129.1| hypothetical protein STMUK_3272 [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 140 Score = 132 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 72/147 (48%), Gaps = 9/147 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I +E + + V I + + L+I+++ +D + + DC ++S +S +LDVE+ I Sbjct: 1 MITAPVEALGYELVGIEFIRGRTSTLRIYIDSED-GINVDDCADVSHQVSAVLDVEDPIS 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LEVSSPG+DRPM + R+ G VA + ++ +++K G I + Sbjct: 60 VAYNLEVSSPGLDRPMFTADHYARFQGEEVALVLRMAVQNRRKWQGIIKAVDGEMITVTV 119 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 E + E + ++ A L+ Sbjct: 120 EGKDEV--------FALSNIQKANLVP 138 >gi|170719905|ref|YP_001747593.1| hypothetical protein PputW619_0719 [Pseudomonas putida W619] gi|259586190|sp|B1J268|RIMP_PSEPW RecName: Full=Ribosome maturation factor rimP gi|169757908|gb|ACA71224.1| protein of unknown function DUF150 [Pseudomonas putida W619] Length = 169 Score = 132 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 85/174 (48%), Gaps = 12/174 (6%) Query: 5 HFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGN 63 +LHS +E + +++ PV+E + ++ I + K+ +L+I++++ +G Sbjct: 7 FYLHSMHEG--VQVSSKLEQLQALLAPVVEGLGYQCWGIEYVSQGKHSVLRIYIDK-EGG 63 Query: 64 MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVL 123 + + DCE +S+ S ILDVE+ I Y LEVSSPG+DRP+ F G V ++ Sbjct: 64 ILVEDCEAVSRQASAILDVEDPISSEYTLEVSSPGMDRPLFTLEQFASHAGEQVKIKLRT 123 Query: 124 SSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 ++ G + G +E+ ++ + + DS+ A +I + + Sbjct: 124 PFEGRRNFQGLLRG--------VEEQDVVVQVDSHEFLLPIDSIDKANIIPSFD 169 >gi|83644099|ref|YP_432534.1| hypothetical protein HCH_01237 [Hahella chejuensis KCTC 2396] gi|83632142|gb|ABC28109.1| uncharacterized protein conserved in bacteria [Hahella chejuensis KCTC 2396] Length = 173 Score = 132 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 75/154 (48%), Gaps = 10/154 (6%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 D+ +++PV+E M + + K LL+I++++ + + + DCE++S+ IS IL Sbjct: 27 KDDLYQLLKPVVEGMGCDFWGMDYIAQGKRSLLRIYIDK-ESGVLVDDCEKVSRQISAIL 85 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I+G Y LEVSSPG DRP+ + + G ++ + ++K G + Sbjct: 86 DVEDPIKGEYTLEVSSPGWDRPLFNVEQYKAYIGSIIEVRLQAPFNGRRKFKGLLAAVEN 145 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L+ + + +++ A ++ Sbjct: 146 DEIVLQVDAE--------EFIFPVETIDKANVVP 171 >gi|223042073|ref|ZP_03612249.1| hypothetical protein AM202_0665 [Actinobacillus minor 202] gi|240949225|ref|ZP_04753569.1| hypothetical protein AM305_09786 [Actinobacillus minor NM305] gi|223017148|gb|EEF15584.1| hypothetical protein AM202_0665 [Actinobacillus minor 202] gi|240296341|gb|EER46985.1| hypothetical protein AM305_09786 [Actinobacillus minor NM305] Length = 153 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 76/155 (49%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ + Q IE M V I L +++++++ +G +T+ DC ++S+ +S I Sbjct: 4 LEQKLTELTQDTIEAMGCELVGIECQRAGRFLTVRLYIDK-EGGVTIDDCSDVSRQVSAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ + + R+ G + + + D++K GK+ Sbjct: 63 LDVEDPIADKYNLEVSSPGLDRPLFTLAHYERFVGREITIHLRIPMFDRRKWQGKLEKVD 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L + + +F ++ A L+ Sbjct: 123 GDLITLIVDNE--------ERQFAFGNIQKANLVP 149 >gi|242240751|ref|YP_002988932.1| hypothetical protein Dd703_3348 [Dickeya dadantii Ech703] gi|242132808|gb|ACS87110.1| protein of unknown function DUF150 [Dickeya dadantii Ech703] Length = 140 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 73/147 (49%), Gaps = 9/147 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I +E + + V I + + L+I+++ +D +T+ DC ++S +S ++DVE+ I Sbjct: 1 MISAPVEALGYELVGIEFIRGRQSTLRIYIDSED-GITVDDCADVSHQVSAVMDVEDPIS 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LEVSSPG+DRP+ + R+ G V+ + ++ +++K G I + Sbjct: 60 VAYNLEVSSPGVDRPLFTAEHYERFTGEEVSLVLRMAVQNRRKWQGIIKSVEGEMITVTV 119 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 E + E + ++ A L+ Sbjct: 120 EGKDEV--------FALSNIQKANLVP 138 >gi|229061420|ref|ZP_04198765.1| hypothetical protein bcere0026_35060 [Bacillus cereus AH603] gi|229134624|ref|ZP_04263434.1| hypothetical protein bcere0014_35330 [Bacillus cereus BDRD-ST196] gi|228648885|gb|EEL04910.1| hypothetical protein bcere0014_35330 [Bacillus cereus BDRD-ST196] gi|228717843|gb|EEL69491.1| hypothetical protein bcere0026_35060 [Bacillus cereus AH603] Length = 164 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 44/164 (26%), Positives = 83/164 (50%), Gaps = 6/164 (3%) Query: 13 PRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEE 71 R+F D + + + QP++EE++ V + ++E + L++F++ + + + +C Sbjct: 5 RRLFMDKKVTEIVEAFAQPIVEELNLELVDVEYVQEGQDWFLRVFIDS-EKGVEIEECGA 63 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+ +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ Sbjct: 64 VSERLSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYKPIDGEKMF 123 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 GK++ L + K +I I D + +ARL VT Sbjct: 124 EGKLLSYDGNTITLLLTIKTRKK----EIQIPMDKVANARLAVT 163 >gi|261342616|ref|ZP_05970474.1| hypothetical protein ENTCAN_09187 [Enterobacter cancerogenus ATCC 35316] gi|296104884|ref|YP_003615030.1| YhbC-like protein [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|288315264|gb|EFC54202.1| hypothetical protein ENTCAN_09187 [Enterobacter cancerogenus ATCC 35316] gi|295059343|gb|ADF64081.1| YhbC-like protein [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 140 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 73/147 (49%), Gaps = 9/147 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I +E + + V I + + L+I+++ +D + + DC ++S +S +LDVE+ I Sbjct: 1 MITAPVEALGYELVGIEFVRGRTSTLRIYIDSED-GINVDDCADVSHQVSAVLDVEDPIT 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LEVSSPG+DRPM ++R+ G VA + ++ +++K G I + Sbjct: 60 VAYNLEVSSPGLDRPMFTAEHYVRFTGEEVALVLRMAVQNRRKWQGIIKAVDGEMITVTV 119 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 E + E + ++ A L+ Sbjct: 120 EGKDEV--------FALSNIQKANLVP 138 >gi|119774096|ref|YP_926836.1| hypothetical protein Sama_0959 [Shewanella amazonensis SB2B] gi|166919003|sp|A1S460|RIMP_SHEAM RecName: Full=Ribosome maturation factor rimP gi|119766596|gb|ABL99166.1| protein of unknown function DUF150 [Shewanella amazonensis SB2B] Length = 151 Score = 131 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 76/154 (49%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ ++ P +E + I + K+ +L+++++ + +++ DC + S+ IS I Sbjct: 4 LETRLAEMLTPAVEAAGYVVWGIEYVQAGKHSILRVYIDS-EQGISVDDCADASRQISAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ + + R+ G V ++ + + L G I Sbjct: 63 LDVEDPISNEYTLEVSSPGLDRPLFNAAQYARYVGEDVKVQLTMPVEGSRNLKGVIDKVE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 ++ + + + ++ D++ +I Sbjct: 123 GQMLTIKVDGK--------TLVVALDNIRKGNII 148 >gi|319790653|ref|YP_004152286.1| protein of unknown function DUF150 [Thermovibrio ammonificans HB-1] gi|317115155|gb|ADU97645.1| protein of unknown function DUF150 [Thermovibrio ammonificans HB-1] Length = 162 Score = 131 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 47/153 (30%), Positives = 82/153 (53%), Gaps = 7/153 (4%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + ++ P++EE F V + +E +L+I+ +R G +T+ DC+ +S+ I + Sbjct: 8 VIDKVKELLAPILEEGGFELVDVEFQKEPVGWVLRIYADRPQGGITISDCQWISERIGTL 67 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE++I Y LEVSSPG+DRP+ + DF R G VV + +++ G ++ TS Sbjct: 68 LDVEDVIPHAYHLEVSSPGLDRPLKTQRDFERHRGVVVKIKTHEPMDNQRNFKGAVVSTS 127 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 E G + + I +D++ SAR+ Sbjct: 128 ERGVTV------HDVSRNADVEIPYDNIKSARV 154 >gi|115372720|ref|ZP_01460026.1| YlxS [Stigmatella aurantiaca DW4/3-1] gi|115370201|gb|EAU69130.1| YlxS [Stigmatella aurantiaca DW4/3-1] Length = 249 Score = 131 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 76/160 (47%), Gaps = 10/160 (6%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAI 76 + ++++P++ + + + E+ +L++F+++ G + L +C ++S+A+ Sbjct: 95 KQTVEERAMTLLEPIVAGEGLELIDLEFVREREGWVLRLFIDKPGGRVGLDECSQVSRAV 154 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD--KQKLIGK 134 P LDVE+++ Y LEVSSPG++RP+ + S + R G V + GD ++ G Sbjct: 155 DPALDVEDLVPNEYNLEVSSPGVNRPLKKLSHYERVKGQKVKVKTFGPIGDPPRKNFSGT 214 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + G +E E G I + A L Sbjct: 215 LTEVTAEGIAVEVEGAGA-------FRIPLKDIAKANLEF 247 >gi|90022355|ref|YP_528182.1| hypothetical protein Sde_2710 [Saccharophagus degradans 2-40] gi|123395825|sp|Q21H59|RIMP_SACD2 RecName: Full=Ribosome maturation factor rimP gi|89951955|gb|ABD81970.1| protein of unknown function DUF150 [Saccharophagus degradans 2-40] Length = 151 Score = 131 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 79/156 (50%), Gaps = 10/156 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 G + ++ PV+E + + L ++ K LL+IF+E+ + + + DCE +S+ +S Sbjct: 3 GKETRLEKMLAPVVESLGCEFWGLELRMQGKQSLLRIFIEK-EAGVGVEDCENVSRQVSA 61 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LDVE+ I G Y LEVSSPG+DRP+ F R+ G V+ + + ++ GK+ Sbjct: 62 VLDVEDPISGEYTLEVSSPGMDRPLFTLDHFTRFVGEHVSLRLRTAFDGRRNFSGKLTAV 121 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + L + + + F+ + A+++ Sbjct: 122 EDDEVILLIDAE--------EYILPFELIDKAQVVP 149 >gi|322615293|gb|EFY12214.1| hypothetical protein SEEM315_15045 [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618348|gb|EFY15239.1| hypothetical protein SEEM971_03440 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622847|gb|EFY19691.1| hypothetical protein SEEM973_09985 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626831|gb|EFY23628.1| hypothetical protein SEEM974_17064 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631400|gb|EFY28160.1| hypothetical protein SEEM201_11154 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635333|gb|EFY32047.1| hypothetical protein SEEM202_21223 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643468|gb|EFY40031.1| hypothetical protein SEEM954_03710 [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647096|gb|EFY43597.1| hypothetical protein SEEM054_06288 [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648899|gb|EFY45344.1| hypothetical protein SEEM675_09177 [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655091|gb|EFY51402.1| hypothetical protein SEEM965_16526 [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657694|gb|EFY53962.1| hypothetical protein SEEM19N_17226 [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664190|gb|EFY60388.1| hypothetical protein SEEM801_14392 [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667473|gb|EFY63635.1| hypothetical protein SEEM507_15450 [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674721|gb|EFY70813.1| hypothetical protein SEEM877_12264 [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675646|gb|EFY71719.1| hypothetical protein SEEM867_11084 [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682282|gb|EFY78305.1| hypothetical protein SEEM180_00717 [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684885|gb|EFY80883.1| hypothetical protein SEEM600_02779 [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323191868|gb|EFZ77116.1| hypothetical protein SEEM581_13996 [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199027|gb|EFZ84124.1| hypothetical protein SEEM501_06456 [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204273|gb|EFZ89282.1| hypothetical protein SEEM460_13042 [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207620|gb|EFZ92567.1| hypothetical protein SEEM020_13687 [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211327|gb|EFZ96171.1| hypothetical protein SEEM6152_16965 [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214731|gb|EFZ99480.1| hypothetical protein SEEM0077_18874 [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221211|gb|EGA05637.1| hypothetical protein SEEM0047_04951 [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224048|gb|EGA08341.1| hypothetical protein SEEM0055_21925 [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230303|gb|EGA14422.1| hypothetical protein SEEM0052_18579 [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233279|gb|EGA17373.1| hypothetical protein SEEM3312_09406 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239316|gb|EGA23366.1| hypothetical protein SEEM5258_06940 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242433|gb|EGA26459.1| hypothetical protein SEEM1156_15792 [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246943|gb|EGA30909.1| ribosome maturation protein RimP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254124|gb|EGA37944.1| ribosome maturation protein RimP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255241|gb|EGA39018.1| ribosome maturation protein RimP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262704|gb|EGA46260.1| hypothetical protein SEEM8284_03071 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264014|gb|EGA47522.1| ribosome maturation protein RimP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269400|gb|EGA52855.1| ribosome maturation protein RimP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 140 Score = 131 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 72/147 (48%), Gaps = 9/147 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I +E + + V I + + L+I+++ +D + + DC ++S +S +LDVE+ I Sbjct: 1 MITAPVEALGYELVGIEFIRGRTSTLRIYIDSED-GINVDDCADVSHQVSAVLDVEDPIS 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LEVSSPG+DRPM + R+ G VA + ++ +++K G I + Sbjct: 60 VAYNLEVSSPGLDRPMFTADHYARFQGEEVALVLRMAVQNRRKWQGIIKAVDGKMITVTV 119 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 E + E + ++ A L+ Sbjct: 120 EGKDEV--------FALSNIQKANLVP 138 >gi|269137761|ref|YP_003294461.1| hypothetical protein ETAE_0403 [Edwardsiella tarda EIB202] gi|267983421|gb|ACY83250.1| conserved hypothetical protein [Edwardsiella tarda EIB202] gi|304557818|gb|ADM40482.1| hypothetical protein ETAF_0358 [Edwardsiella tarda FL6-60] Length = 140 Score = 131 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 71/147 (48%), Gaps = 9/147 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I +E + F V I + ++ L+I+++ ++ +T+ +C ++S +S +LDVE+ I Sbjct: 1 MITAPVEALGFELVGIEFIRGRHSTLRIYIDSEE-GITVDNCADVSHQVSAVLDVEDPIS 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LEVSSPG+DRP+ + + V + ++ +++K G I + Sbjct: 60 VAYYLEVSSPGMDRPLFTAEHYTHFLNEEVTLVLRMAMQNRRKWQGIIKAVDGEMITVTV 119 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 + + E + ++ A L+ Sbjct: 120 DGKDEV--------FALSNVQKANLVP 138 >gi|332976857|gb|EGK13682.1| protein of hypothetical function DUF150 [Desmospora sp. 8437] Length = 170 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 40/172 (23%), Positives = 75/172 (43%), Gaps = 9/172 (5%) Query: 4 THFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDG 62 T E + + ++QP++ E + KN +L+++++R DG Sbjct: 5 TGRRTELKEGEDQMSRKVTEAVEEMVQPILAEEGLELYDTEYTKEGKNWILRVYIDRPDG 64 Query: 63 NMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV 122 + L DC +S+ + +LD E+ + G Y LEVSSPG +RP+ + + F G + Sbjct: 65 KVDLDDCGRVSERLGEVLDREDPLTGQYFLEVSSPGAERPLKKPAHFEAAVGKRIFLNTF 124 Query: 123 LSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++K G + S +E + E + I + + ARL++ Sbjct: 125 EPVDGRKKFEGVLTRYSPESLTVETD--------EGAVEIPTEKVAKARLVL 168 >gi|289207908|ref|YP_003459974.1| hypothetical protein TK90_0723 [Thioalkalivibrio sp. K90mix] gi|288943539|gb|ADC71238.1| protein of unknown function DUF150 [Thioalkalivibrio sp. K90mix] Length = 151 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 72/151 (47%), Gaps = 10/151 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++ PV+E F + + L+I+++ + +T+ DC +S+ +L+ Sbjct: 6 EQLKTLLAPVVEGQGFVFWGLEYHPGSKPVMLRIYIDSPE-GVTVDDCALVSEQAGAVLE 64 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE + G+Y LEVSSPGI+RP+ + + GH V + ++ G ++G E Sbjct: 65 VEQALRGNYTLEVSSPGIERPLFTPDQYRGYIGHPVKVRLSWPEHGRRNYRGTLIGVDEE 124 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +E + G + +++ +AR+ Sbjct: 125 MIEVEVDGTG--------YELPLNAIHNARV 147 >gi|88797621|ref|ZP_01113210.1| hypothetical protein MED297_10726 [Reinekea sp. MED297] gi|88779793|gb|EAR10979.1| hypothetical protein MED297_10726 [Reinekea sp. MED297] Length = 155 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 78/154 (50%), Gaps = 10/154 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 +++ +I+PV+ M F + + L+I+++ +D + + C ++S+ +S +LD Sbjct: 9 DELTDLIEPVVIGMGFLLWGVEYIPSGNYSTLRIYIDHED-GIQVDQCADVSRQVSAVLD 67 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I +Y LEVSSPG+DRP+ + + G V ++ + ++K G ++G + Sbjct: 68 VEDPISSNYTLEVSSPGMDRPLFTLEQYAAYIGEWVDIKLRYAFEGRRKFKGVLVGIEDG 127 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 ++ +K + + +S+ R+I Sbjct: 128 DVIVQVDKE--------EFLLPIESIDRGRIIPN 153 >gi|295097659|emb|CBK86749.1| Uncharacterized protein conserved in bacteria [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 140 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 73/147 (49%), Gaps = 9/147 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I +E + + V I + + L+I+++ +D + + DC ++S +S +LDVE+ I Sbjct: 1 MITAPVEALGYELVGIEFVRGRTSTLRIYIDSED-GINVDDCADVSHQVSAVLDVEDPIT 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LEVSSPG+DRPM ++R+ G VA + ++ +++K G I + Sbjct: 60 VAYNLEVSSPGLDRPMFTDEHYVRFTGEEVALVLRMAVQNRRKWQGIIKAVDGEMITVTV 119 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 E + E + ++ A L+ Sbjct: 120 EGKDEV--------FALSNIQKANLVP 138 >gi|294011602|ref|YP_003545062.1| hypothetical protein SJA_C1-16160 [Sphingobium japonicum UT26S] gi|292674932|dbj|BAI96450.1| conserved hypothetical protein [Sphingobium japonicum UT26S] Length = 196 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 55/167 (32%), Positives = 86/167 (51%), Gaps = 9/167 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDD-GNMTLRDCEELSQAI 76 M +++++I+P ++ + F V+I L + LQI ER + + + DC +S+ + Sbjct: 23 MADIAELTALIEPEVKALGFDLVRIKLFGSGDEYTLQIMAERPETKQLVIEDCAAISRRL 82 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 S +LD + IE YRLEVSSPGIDRP+ R +DFL W GH + ++ G + Sbjct: 83 SDVLDEADPIEEAYRLEVSSPGIDRPLTRLTDFLEWAGHEAKIAATETVSGRKSFRGVLK 142 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 G K G +AI F + A+LI+TD L+ AS+ Sbjct: 143 GVEGEDILFADAKAG-------DVAIPFALVGDAKLILTDALIAASM 182 >gi|119504357|ref|ZP_01626437.1| hypothetical protein MGP2080_00755 [marine gamma proteobacterium HTCC2080] gi|119459865|gb|EAW40960.1| hypothetical protein MGP2080_00755 [marine gamma proteobacterium HTCC2080] Length = 166 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 71/154 (46%), Gaps = 10/154 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 G +S ++ P +E + F + L + L++F+E D +++ DC ++S+ + Sbjct: 3 GKESRLSELLTPTVESLGFELWGLELLSPNRRPTLRLFIEG-DTGVSVDDCAKVSRHVGG 61 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LDVE+ I G Y LEVSSPGIDR + + + + G + ++ +++ G +MG Sbjct: 62 VLDVEDPISGDYTLEVSSPGIDRLLFKVDQYGLYIGEPIEVKLRFPFEGRRRFRGWLMGI 121 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + E + + AR+ Sbjct: 122 EGEDVVVRVED--------HDYLLPLKQIDRARV 147 >gi|229168556|ref|ZP_04296279.1| hypothetical protein bcere0007_35130 [Bacillus cereus AH621] gi|228614962|gb|EEK72064.1| hypothetical protein bcere0007_35130 [Bacillus cereus AH621] Length = 164 Score = 130 bits (328), Expect = 8e-29, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 84/164 (51%), Gaps = 6/164 (3%) Query: 13 PRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEE 71 R+F D + + + QP++EE++ V + ++E + L++F++ + + + +C Sbjct: 5 RRLFMDKKVTEIVEAFAQPIVEELNLELVDVEYVQEGQDWFLRVFIDS-EKGVEIEECGA 63 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+ +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ Sbjct: 64 VSERLSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYKPIDGEKMF 123 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 GK++ T L + K +I I D + +ARL VT Sbjct: 124 EGKLLSYDGTTITLLLTIKTRKK----EIQIPMDKVANARLAVT 163 >gi|329997773|ref|ZP_08302912.1| hypothetical protein HMPREF9538_00552 [Klebsiella sp. MS 92-3] gi|150956943|gb|ABR78973.1| hypothetical protein KPN_03578 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|328538907|gb|EGF64968.1| hypothetical protein HMPREF9538_00552 [Klebsiella sp. MS 92-3] Length = 140 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 72/147 (48%), Gaps = 9/147 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 ++ +E + F V I + + L+I+++ +D + + DC ++S +S ++DVE+ I Sbjct: 1 MLTAPVEALGFELVGIEFIRGRTSTLRIYIDSED-GINVDDCADVSHQVSAVMDVEDPIT 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LEVSSPG+DRPM + R+ G VA + ++ +++K G I + Sbjct: 60 VAYNLEVSSPGLDRPMFTAEHYQRFTGEEVALVLRMAVQNRRKWQGIIKAVDGEMITVTV 119 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 E + E + ++ A L+ Sbjct: 120 EGKDEV--------FALSNIQKANLVP 138 >gi|126253833|sp|Q1RIX2|RIMP_RICBR RecName: Full=Ribosome maturation factor rimP gi|259586219|sp|A8GW29|RIMP_RICB8 RecName: Full=Ribosome maturation factor rimP Length = 168 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 48/164 (29%), Positives = 91/164 (55%), Gaps = 9/164 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVER-DDGNMTLRDCEELSQAISPI 79 + I+ +IQ + +M F V + + + +++I ++R DD +T+ DC + S IS I Sbjct: 4 IEQQITDLIQETLSDMGFELVLVRVKGLSSKVVEILIDRLDDQKVTIEDCTKASNTISAI 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE++IE Y LEVSS G++RP+V+ ++ R+ G V ++ + + G I+ Sbjct: 64 LDVEDLIEEAYYLEVSSSGVERPLVKFENYKRFIGREVKIKLKELLNGRSRYQGTIIEAK 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 + +L+ E ++ I++D + SA L++T+E+ + L Sbjct: 124 DDKVYLKWED--------QEVIINYDLIKSANLVLTEEMFKKLL 159 >gi|77457004|ref|YP_346509.1| hypothetical protein Pfl01_0777 [Pseudomonas fluorescens Pf0-1] gi|77381007|gb|ABA72520.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1] Length = 173 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 77/156 (49%), Gaps = 10/156 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 ++ +++ PV+ + + I ++ +L++++++ +G + + DC +S+ IS +LD Sbjct: 27 EELQALLAPVVVALGYECWGIEFSAQGRHSMLRVYIDK-EGGVLVDDCAIVSRQISGVLD 85 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I Y LEVSSPG++RP+ F ++ G V ++ ++ G + G Sbjct: 86 VEDPISVEYTLEVSSPGMERPLFTLEQFAKYVGEQVKIKLRSPFEGRRNFQGLLRGV--- 142 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 +E+ + + + D + A +I + + Sbjct: 143 -----EEQDVVVQVENHEFLLPIDMIDKANIIPSFD 173 >gi|261492532|ref|ZP_05989085.1| hypothetical protein COK_0954 [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496807|ref|ZP_05993181.1| hypothetical protein COI_2524 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307554|gb|EEY08883.1| hypothetical protein COI_2524 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311691|gb|EEY12841.1| hypothetical protein COK_0954 [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 153 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + ++ IE + F V I L +++++++ +G +T+ DC ++S+ +S I Sbjct: 4 LEQKLEDLVLDSIEALGFELVGIECQRAGRFLTVRLYIDK-EGGVTIDDCSDVSRQVSAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 DVE+ I Y LEVSSPG+DRP+ + + R+ G V + + D++K GKI Sbjct: 63 FDVEDPIADKYNLEVSSPGLDRPLFTVAHYERFIGQDVVIHLRIPMFDRRKWQGKIKQVE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L E +F ++ A L+ Sbjct: 123 GDFITLTVENEDC--------QFAFGNIQKANLVP 149 >gi|194099045|ref|YP_002002126.1| hypothetical protein NGK_1501 [Neisseria gonorrhoeae NCCP11945] gi|193934335|gb|ACF30159.1| UPF0090 protein [Neisseria gonorrhoeae NCCP11945] Length = 205 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 83/168 (49%), Gaps = 16/168 (9%) Query: 8 HSKYEPR---IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNM 64 + PR +G + DI ++++ + + + V L + L++F+++ +G + Sbjct: 45 FDEKWPRGHFFIMYIGSSMDIQTILEKTLPGLGYELVDFELAAQG--TLRVFIDK-EGGI 101 Query: 65 TLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS 124 T+ DC +S +S + VE+I G+ LE+SSPG+DRP+ + +DF+R+ G + L Sbjct: 102 TVEDCATVSNHLSRVFMVEDI--GYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLP 159 Query: 125 SGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G ++ IGKI G + + + + I ++ ARL Sbjct: 160 IGGQKNFIGKIEGCENDTVTVSFDGK--------TVQIELGNIDKARL 199 >gi|307825108|ref|ZP_07655329.1| protein of unknown function DUF150 [Methylobacter tundripaludum SV96] gi|307733856|gb|EFO04712.1| protein of unknown function DUF150 [Methylobacter tundripaludum SV96] Length = 161 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 83/166 (50%), Gaps = 11/166 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + ++I+P++E + + V I K+ LL+I+++ D + + DC ++S IS ++D Sbjct: 6 EHLVNLIEPIVEGLGYECVGIEYNPHPKHGLLRIYIDS-DNGILVEDCTKVSHQISGVMD 64 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I G+Y LE+SSPG DRP + S F R+ G V + + ++K+ G I + Sbjct: 65 VEDPILGNYHLEISSPGEDRPFFKVSQFERYIGSTVLVHLFKAIDGRRKITGLIEKVEDD 124 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYG 187 L+ E + F ++ ARL+ + L+ + Sbjct: 125 IITLKD--------GEQVFEVPFIAMSKARLVP-EYLIEKGGRSGK 161 >gi|34222833|sp|Q88DV5|RIMP_PSEPK RecName: Full=Ribosome maturation factor rimP Length = 158 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 79/156 (50%), Gaps = 10/156 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++ PV+E + ++ I + K+ +L+I++++ +G + + DCE +S+ S ILD Sbjct: 12 EQLQALLAPVVEGLGYQCWGIEYVSQGKHSVLRIYIDK-EGGILVDDCEAVSRQASAILD 70 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I Y LEVSSPG+DRP+ F G V ++ ++ G + G Sbjct: 71 VEDPISSEYTLEVSSPGMDRPLFTLEQFASHAGEQVKIKLRSPFEGRRNFQGLLRG---- 126 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 +E+ ++ + + DS+ A +I + + Sbjct: 127 ----VEEQDVVVQVDNQEFLLPIDSIDKANIIPSFD 158 >gi|259585813|sp|Q2SML5|RIMP_HAHCH RecName: Full=Ribosome maturation factor rimP Length = 150 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 76/157 (48%), Gaps = 10/157 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M D+ +++PV+E M + + K LL+I++++ + + + DCE++S+ IS Sbjct: 1 MARKDDLYQLLKPVVEGMGCDFWGMDYIAQGKRSLLRIYIDK-ESGVLVDDCEKVSRQIS 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ILDVE+ I+G Y LEVSSPG DRP+ + + G ++ + ++K G + Sbjct: 60 AILDVEDPIKGEYTLEVSSPGWDRPLFNVEQYKAYIGSIIEVRLQAPFNGRRKFKGLLAA 119 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L+ + + +++ A ++ Sbjct: 120 VENDEIVLQVDAE--------EFIFPVETIDKANVVP 148 >gi|312796185|ref|YP_004029107.1| hypothetical protein RBRH_03643 [Burkholderia rhizoxinica HKI 454] gi|312167960|emb|CBW74963.1| Hypothetical cytosolic protein [Burkholderia rhizoxinica HKI 454] Length = 216 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 77/154 (50%), Gaps = 9/154 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 +S +I+ + + + V + +L++F+++ + + DCE++++ + +L VE Sbjct: 66 QLSELIENTVTGLGYELVDLERSGRG--MLRVFIDQP-AGIAIDDCEKVTRQLQHVLTVE 122 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DRP+ +++DF R+ G V + G ++ G + + Sbjct: 123 NI--DYERLEVSSPGLDRPLKKRADFERFAGSEVMVTLKQPLGGRKSFRGILHAPNGDTI 180 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 LE E + ++ + + ARL+ + Sbjct: 181 GLEFEGKD----GPARLDFTLADMDRARLVPQVD 210 >gi|167035705|ref|YP_001670936.1| hypothetical protein PputGB1_4714 [Pseudomonas putida GB-1] gi|189040210|sp|B0KHY0|RIMP_PSEPG RecName: Full=Ribosome maturation factor rimP gi|166862193|gb|ABZ00601.1| protein of unknown function DUF150 [Pseudomonas putida GB-1] Length = 152 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 79/156 (50%), Gaps = 10/156 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++ PV+E + ++ I + K+ +L+I++++ +G + + DCE +S+ S ILD Sbjct: 6 EQLQALLAPVVEGLGYQCWGIEYVSQGKHSVLRIYIDK-EGGILVEDCEAVSRQASAILD 64 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I Y LEVSSPG+DRP+ F G V ++ ++ G + G Sbjct: 65 VEDPISSEYTLEVSSPGMDRPLFTLEQFASHAGEQVKIKLRSPFEGRRNFQGLLRG---- 120 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 +E+ ++ + + DS+ A +I + + Sbjct: 121 ----VEEQDVVVQVDNQEFLLPIDSIDKANIIPSFD 152 >gi|239826653|ref|YP_002949277.1| hypothetical protein GWCH70_1151 [Geobacillus sp. WCH70] gi|259585779|sp|C5D9C5|RIMP_GEOSW RecName: Full=Ribosome maturation factor rimP gi|239806946|gb|ACS24011.1| protein of unknown function DUF150 [Geobacillus sp. WCH70] Length = 157 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 77/159 (48%), Gaps = 6/159 (3%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQA 75 + + ++ P++ +M V I ++ KN L++F++ D + + C +S+ Sbjct: 1 MSKKVTNIVEELVTPILADMDLELVDIEYVKEGKNWFLRVFIDS-DNGVDIEQCGMVSEK 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LD + I +Y LEVSSPG +RP+ + DF + G V + +++ G++ Sbjct: 60 LSEKLDEVDPIPHNYFLEVSSPGAERPLKKPKDFTKAIGKNVYIKTYEPIEGEKEFEGEL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +G T + + + K I I ++ + SARL V Sbjct: 120 IGFDGTTVSVTVKDKTRKK----TIDIPYEKVASARLAV 154 >gi|84778873|dbj|BAE73650.1| conserved hypothetical protein [Sodalis glossinidius str. 'morsitans'] Length = 140 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 72/147 (48%), Gaps = 9/147 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I +E + F V I + + L+I++ D +T+ DC ++S +S +LDVE+ I Sbjct: 1 MITAPVEALGFELVGIEFIRGRQSTLRIYI-NSDEGITVDDCADVSHQVSAVLDVEDPIS 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LEVSSPG+DRP+ + + ++ G V+ + ++ +++K G I + Sbjct: 60 VAYSLEVSSPGLDRPLFTAAHYRQFIGSDVSVVLRIAVQNRRKWQGIIKAVDGEMITVTV 119 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 + + E + ++ A L+ Sbjct: 120 DGKDEV--------FALQNIQKANLVP 138 >gi|90416133|ref|ZP_01224065.1| hypothetical protein GB2207_10663 [marine gamma proteobacterium HTCC2207] gi|90331858|gb|EAS47072.1| hypothetical protein GB2207_10663 [marine gamma proteobacterium HTCC2207] Length = 151 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 78/156 (50%), Gaps = 10/156 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + + +++QPV+E + + L K LL+I+++R+D + + DCE +S+ Sbjct: 3 AVDSTLKALLQPVVEALDCELWGLELQSGGKRKLLRIYIDRED-GIGVEDCERVSRQSGS 61 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LDVE++I G Y LEVSSPG+DRP+ + + R+ G V+ + + ++ G+++G Sbjct: 62 VLDVEDVISGEYILEVSSPGMDRPLYELAQYERYIGEDVSLRLRFAYDGRRNFKGRLVGV 121 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L + + + + A ++ Sbjct: 122 DGDEIVLVV--------ADTEYLFPVEGIDKANVVP 149 >gi|148976709|ref|ZP_01813396.1| hypothetical protein VSWAT3_19956 [Vibrionales bacterium SWAT-3] gi|145964060|gb|EDK29318.1| hypothetical protein VSWAT3_19956 [Vibrionales bacterium SWAT-3] Length = 151 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 75/157 (47%), Gaps = 10/157 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ ++ + + V + + + L+I+++ + + + DC E+S +S Sbjct: 2 TGLERQLTEMLDAPVAASGYELVGLEFIRAGEHSTLRIYIDSPN-GINVDDCAEVSHQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++DVE+ I Y LEVSSPG++RP+ + + ++ GH V+ + ++ G+++K G I Sbjct: 61 AVMDVEDPISVAYNLEVSSPGLERPLFKAEHYQQFIGHEVSIVLKMAVGNRRKWKGDIQS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + E ++ A LI Sbjct: 121 IEGETVKVLVEGQEE--------EFVLSNIAKANLIP 149 >gi|254361244|ref|ZP_04977387.1| hypothetical protein MHA_0829 [Mannheimia haemolytica PHL213] gi|153092740|gb|EDN73783.1| hypothetical protein MHA_0829 [Mannheimia haemolytica PHL213] Length = 153 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + ++ IE + F V I L +++++++ +G +T+ DC ++S+ +S I Sbjct: 4 LEQKLEDLVLDSIEALGFELVGIECQRAGRFLTVRLYIDK-EGGVTIDDCSDVSRQVSAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 DVE+ I Y LEVSSPG+DRP+ + + R+ G V + + D++K GKI Sbjct: 63 FDVEDPIADKYNLEVSSPGLDRPLFTVAHYERFIGQDVVIHLRIPMFDRRKWQGKIKQVE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L E +F ++ A L+ Sbjct: 123 GDFITLTVENEDR--------QFAFGNIQKANLVP 149 >gi|325276163|ref|ZP_08141968.1| ribosome maturation protein RimP [Pseudomonas sp. TJI-51] gi|324098700|gb|EGB96741.1| ribosome maturation protein RimP [Pseudomonas sp. TJI-51] Length = 152 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 79/156 (50%), Gaps = 10/156 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++ PV+E + ++ I + K+ +L+I++++ +G + + DCE +S+ S ILD Sbjct: 6 EQLQALLAPVVEGLGYQCWGIEFVSQGKHSVLRIYIDK-EGGILVDDCEAVSRQASAILD 64 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I Y LEVSSPG+DRP+ F G V ++ ++ G + G Sbjct: 65 VEDPISSEYTLEVSSPGMDRPLFTLEQFASHAGEQVKIKLRSPFEGRRNFQGLLRG---- 120 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 +E+ ++ + + DS+ A +I + + Sbjct: 121 ----VEEQDVVVQVDNQEFLLPIDSIDKANIIPSFD 152 >gi|121998530|ref|YP_001003317.1| hypothetical protein Hhal_1751 [Halorhodospira halophila SL1] gi|166980218|sp|A1WXV3|RIMP_HALHL RecName: Full=Ribosome maturation factor rimP gi|121589935|gb|ABM62515.1| protein of unknown function DUF150 [Halorhodospira halophila SL1] Length = 151 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 83/157 (52%), Gaps = 9/157 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 M + S+++P + + + V + L K L+++++ + L DCE +S +S Sbjct: 1 MSQIQTLHSLLEPTVTGLGYELVGVELTGAKGNRTLRVYIDTP-AGIRLEDCEAVSHQVS 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ IEG Y LEVSSPG+DRP+ + +D+ R++G + ++ ++++ G ++G Sbjct: 60 GLLDVEDPIEGAYNLEVSSPGLDRPIFKSADYDRFSGERIKLRLLELYEGRRRVKGVLLG 119 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + ++ +++ I + + ARL + Sbjct: 120 LDGEFVRVRD-------VDGVELRIPLELIDRARLDL 149 >gi|238897564|ref|YP_002923243.1| hypothetical protein HDEF_0333 [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259585781|sp|C4K3F2|RIMP_HAMD5 RecName: Full=Ribosome maturation factor rimP gi|229465321|gb|ACQ67095.1| conserved hypothetical protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 155 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 78/161 (48%), Gaps = 9/161 (5%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELS 73 R G L + +I +E + + V I ++ + +L+I+++ ++ +T+ C ++S Sbjct: 2 RSVGLSILVKKLKKIITAPVEGLGYELVGIEFIQSRQSVLRIYIDHEE-GVTVDSCADVS 60 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 + +S +LDVE+ I Y LE+SSPG+DRP+ + ++ G V + ++ +++K G Sbjct: 61 KEVSLVLDVEDPITVPYNLEISSPGLDRPLFTARHYAQFIGEKVNLMLRMAIQNQRKWQG 120 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 I + ++ E + ++ A L+ Sbjct: 121 IIKSVDGESIIVAVNQKDEV--------FALSNIQKANLVP 153 >gi|228922571|ref|ZP_04085871.1| hypothetical protein bthur0011_35560 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228960033|ref|ZP_04121697.1| hypothetical protein bthur0005_35040 [Bacillus thuringiensis serovar pakistani str. T13001] gi|229047503|ref|ZP_04193093.1| hypothetical protein bcere0027_34860 [Bacillus cereus AH676] gi|229071315|ref|ZP_04204538.1| hypothetical protein bcere0025_34880 [Bacillus cereus F65185] gi|229081072|ref|ZP_04213582.1| hypothetical protein bcere0023_37110 [Bacillus cereus Rock4-2] gi|229111288|ref|ZP_04240841.1| hypothetical protein bcere0018_35340 [Bacillus cereus Rock1-15] gi|229129093|ref|ZP_04258066.1| hypothetical protein bcere0015_35380 [Bacillus cereus BDRD-Cer4] gi|229146388|ref|ZP_04274759.1| hypothetical protein bcere0012_35310 [Bacillus cereus BDRD-ST24] gi|229152016|ref|ZP_04280211.1| hypothetical protein bcere0011_35560 [Bacillus cereus m1550] gi|229180093|ref|ZP_04307437.1| hypothetical protein bcere0005_34390 [Bacillus cereus 172560W] gi|228603302|gb|EEK60779.1| hypothetical protein bcere0005_34390 [Bacillus cereus 172560W] gi|228631365|gb|EEK87999.1| hypothetical protein bcere0011_35560 [Bacillus cereus m1550] gi|228637021|gb|EEK93480.1| hypothetical protein bcere0012_35310 [Bacillus cereus BDRD-ST24] gi|228654330|gb|EEL10195.1| hypothetical protein bcere0015_35380 [Bacillus cereus BDRD-Cer4] gi|228672064|gb|EEL27355.1| hypothetical protein bcere0018_35340 [Bacillus cereus Rock1-15] gi|228702116|gb|EEL54592.1| hypothetical protein bcere0023_37110 [Bacillus cereus Rock4-2] gi|228711769|gb|EEL63721.1| hypothetical protein bcere0025_34880 [Bacillus cereus F65185] gi|228723750|gb|EEL75105.1| hypothetical protein bcere0027_34860 [Bacillus cereus AH676] gi|228799549|gb|EEM46502.1| hypothetical protein bthur0005_35040 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228837000|gb|EEM82341.1| hypothetical protein bthur0011_35560 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 164 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 85/164 (51%), Gaps = 6/164 (3%) Query: 13 PRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEE 71 R+F D + + + QP++EE++ V + ++E + L++F++ + + + +C Sbjct: 5 RRLFMDKKVTEVVEAFAQPIVEELNLELVDVEYVKEGQDWFLRVFIDS-EKGVDIEECGA 63 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+ +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ Sbjct: 64 VSERLSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMF 123 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 GK++ T L + K +I IS D + +ARL VT Sbjct: 124 EGKLLSYDGTTITLLLTIKTRKK----EIQISMDKVANARLAVT 163 >gi|220931625|ref|YP_002508533.1| hypothetical protein Hore_07810 [Halothermothrix orenii H 168] gi|259585780|sp|B8CW69|RIMP_HALOH RecName: Full=Ribosome maturation factor rimP gi|219992935|gb|ACL69538.1| uncharacterized protein conserved in bacteria [Halothermothrix orenii H 168] Length = 159 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 81/161 (50%), Gaps = 7/161 (4%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISP 78 + + + QP++E V + ++E N +L++F+E +G +TL CE +S+ + Sbjct: 3 KITDRVEDLAQPIVESQGLELVDVEYVKEGENRVLRVFIENPEGEVTLDHCENVSKNLDE 62 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LD + I+ Y LEVSSPGI+RP+ +K DF R++G + + +++ G I G Sbjct: 63 KLDEVDPIQESYILEVSSPGIERPLKKKEDFDRFSGKLAYIKTFAPVSGNKEITGIIKGR 122 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELL 179 + K ++ ++ I F + A L+V + + Sbjct: 123 DGDNI------KVLKKDDDKELEIPFSQIAKAHLMVDFDNI 157 >gi|329891252|ref|ZP_08269595.1| hypothetical protein BDIM_29650 [Brevundimonas diminuta ATCC 11568] gi|328846553|gb|EGF96117.1| hypothetical protein BDIM_29650 [Brevundimonas diminuta ATCC 11568] Length = 198 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 53/180 (29%), Positives = 84/180 (46%), Gaps = 10/180 (5%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERD-DGNMTLRDCEEL 72 + + +I PV E + V++ L+ LQI ER D ++++ +C L Sbjct: 1 MRAKTAEDRALLELIDPVAESLGLAVVRVRLMGGTLRRRLQIMAERQTDHDISVEECARL 60 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+A+S +LD + I G Y LEVSSPGIDRP+ R DF + G E +++ Sbjct: 61 SRAVSEVLDAADPISGEYLLEVSSPGIDRPLTRLIDFDLFEGLEARLETDRMVEGRKRFK 120 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR--ASLNNYGSYA 190 G + GT ++ + + I F L A+L++TDELL+ A+L Sbjct: 121 GVVAGTEGENIAIDLDG------EDETALIPFAWLADAKLVLTDELLKRGAALRAARGEP 174 >gi|229031447|ref|ZP_04187447.1| hypothetical protein bcere0028_35010 [Bacillus cereus AH1271] gi|228729736|gb|EEL80716.1| hypothetical protein bcere0028_35010 [Bacillus cereus AH1271] Length = 164 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 85/164 (51%), Gaps = 6/164 (3%) Query: 13 PRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEE 71 R+F D + + + QP++EE++ V + ++E + L++F++ + + + +C Sbjct: 5 RRLFMDKKVTEVVEAFAQPIVEELNLELVDVEYVQEGQDWFLRVFIDS-EKGVDIEECGA 63 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+ +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ Sbjct: 64 VSERLSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMF 123 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 GK++ T L + K +I IS D + +ARL VT Sbjct: 124 EGKLLSYDGTTITLLLTIKTRKK----EIQISMDKVANARLAVT 163 >gi|259586209|sp|A3QGU7|RIMP_SHELP RecName: Full=Ribosome maturation factor rimP Length = 151 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 73/154 (47%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + ++ +E + + + K+ +L+++++ + + + DC ++S+ IS + Sbjct: 4 LESKLEQMLIAPVEALGHSLWGLEYVQAGKHSVLRVYIDN-ENGIFIDDCADVSRQISAV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ + R+ G V ++ + + L G + G Sbjct: 63 LDVEDPISTEYTLEVSSPGVDRPLFTAEQYARYLGETVKVQLTMPVAGSRNLKGTVAGVE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + ++ I+ D++ LI Sbjct: 123 GQMLTLTVDG--------NELIIALDNIRKGNLI 148 >gi|157376523|ref|YP_001475123.1| hypothetical protein Ssed_3391 [Shewanella sediminis HAW-EB3] gi|157318897|gb|ABV37995.1| protein of unknown function DUF150 [Shewanella sediminis HAW-EB3] Length = 172 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 73/161 (45%), Gaps = 10/161 (6%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEEL 72 R + + +++ +E + + + K+ +L+++++ + + + DC E Sbjct: 18 RGVTLATIENRLEEMLKSPVEALGHTLWGLEYVQAGKHSILRVYIDN-EKGIFIEDCAET 76 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+ +S +LDVE+ I Y LEVSSPG+DRP+ + + + V ++ + + L Sbjct: 77 SRQVSAVLDVEDPISTEYTLEVSSPGVDRPLFKAEQYAAYIDETVKIQLTMPVAGSRNLK 136 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 G I G L + ++ I+ D++ LI Sbjct: 137 GTITGIEGQMLSLTVDG--------NELIIALDNIRKGNLI 169 >gi|229592638|ref|YP_002874757.1| hypothetical protein PFLU5255 [Pseudomonas fluorescens SBW25] gi|229364504|emb|CAY52354.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25] Length = 173 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 78/156 (50%), Gaps = 10/156 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 ++ +++ PV+ + + I ++ +L++++++ +G + + DC +S+ IS +LD Sbjct: 27 EELQALLAPVVVALGYECWGIEFSAQGRHSMLRVYIDK-EGGVLVDDCAIVSRQISGVLD 85 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I Y LEVSSPG++RP+ F ++ G V ++ ++ G + G Sbjct: 86 VEDPISVEYTLEVSSPGMERPLFTIDQFAKFAGEQVKIKLRSPFEGRRNFQGLLRGV--- 142 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 +E+ + + + + D + A +I + + Sbjct: 143 -----EEQDVVVQVEDHEFLLPIDMIDKANIIPSFD 173 >gi|312963085|ref|ZP_07777570.1| hypothetical protein PFWH6_5007 [Pseudomonas fluorescens WH6] gi|311282596|gb|EFQ61192.1| hypothetical protein PFWH6_5007 [Pseudomonas fluorescens WH6] Length = 173 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 78/156 (50%), Gaps = 10/156 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 ++ +++ PV+ + + I ++ +L++++++ +G + + DC +S+ IS +LD Sbjct: 27 EELQALLAPVVVALGYECWGIEFSAQGRHSMLRVYIDK-EGGVLVDDCAIVSRQISGVLD 85 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I Y LEVSSPG++RP+ F ++ G V ++ ++ G + G Sbjct: 86 VEDPISVEYTLEVSSPGMERPLFTIEQFAKFAGEQVKIKLRSPFEGRRNFQGLLRGV--- 142 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 +E+ + + + + D + A +I + + Sbjct: 143 -----EEQDVVVQVEDHEFLLPIDMIDKANIIPSFD 173 >gi|84387287|ref|ZP_00990308.1| hypothetical protein V12B01_22696 [Vibrio splendidus 12B01] gi|86148619|ref|ZP_01066902.1| hypothetical protein MED222_21704 [Vibrio sp. MED222] gi|218710447|ref|YP_002418068.1| hypothetical protein VS_2484 [Vibrio splendidus LGP32] gi|254765031|sp|B7VJH9|RIMP_VIBSL RecName: Full=Ribosome maturation factor rimP gi|84377934|gb|EAP94796.1| hypothetical protein V12B01_22696 [Vibrio splendidus 12B01] gi|85833610|gb|EAQ51785.1| hypothetical protein MED222_21704 [Vibrio sp. MED222] gi|218323466|emb|CAV19643.1| conserved hypothetical protein [Vibrio splendidus LGP32] Length = 151 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 75/157 (47%), Gaps = 10/157 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 GL ++ ++ + + V + + + L+I+++ + + + DC E+S +S Sbjct: 2 TGLERQLTEMLDAPVAASGYELVGLEFIRAGEHSTLRIYIDSPN-GINVDDCSEVSHQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++DVE+ I Y LEVSSPG++RP+ + + ++ GH V+ + ++ G+++K G I Sbjct: 61 AVMDVEDPISVAYNLEVSSPGLERPLFKAEHYQQFIGHEVSIVLKMAVGNRRKWKGDIQS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + E ++ A LI Sbjct: 121 IEGETVKVLVEGQEE--------EFVLSNIAKANLIP 149 >gi|70734335|ref|YP_257975.1| hypothetical protein PFL_0842 [Pseudomonas fluorescens Pf-5] gi|91208376|sp|Q4KIF8|RIMP_PSEF5 RecName: Full=Ribosome maturation factor rimP gi|68348634|gb|AAY96240.1| 15 kDa protein [Pseudomonas fluorescens Pf-5] Length = 158 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 78/156 (50%), Gaps = 10/156 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++ PV+ + + I ++ LL++++++ +G + + DC +S+ IS +LD Sbjct: 12 EQLQALLAPVVVALGYECWGIEFSAQGRHSLLRVYIDK-EGGVLVDDCAIVSRQISGVLD 70 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I Y LEVSSPG++RP+ F ++ G V ++ ++ G + G Sbjct: 71 VEDPISVEYTLEVSSPGMERPLFTLEQFAKYVGEQVKIKLRSPFEGRRNFQGLLRG---- 126 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 +E+ +++ + + D + A +I + + Sbjct: 127 ----VEEQDVVVQVDDHEFLLPIDMIDKANIIPSFD 158 >gi|229544432|ref|ZP_04433490.1| protein of unknown function DUF150 [Bacillus coagulans 36D1] gi|229324917|gb|EEN90594.1| protein of unknown function DUF150 [Bacillus coagulans 36D1] Length = 155 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 76/157 (48%), Gaps = 6/157 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + + + PV+E + V I ++ KN L++++++ + + + +C +S+ + Sbjct: 2 SKVVEVVEQLASPVVEGLGLELVDIEYVKEGKNWFLRVYIDK-ENGVDIEECGLVSERLG 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + I +Y LEVSSPG +RP+ + DF R G V + ++ GK++ Sbjct: 61 EKLDEVDPIPHNYFLEVSSPGAERPLKKARDFERAVGRTVLVKTYEPLDGEKTFQGKLIA 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 LE + + +K + I +D + +ARL V Sbjct: 121 FHNGCLTLECKVKTKKI----EKEIPYDKVANARLAV 153 >gi|288940249|ref|YP_003442489.1| hypothetical protein Alvin_0500 [Allochromatium vinosum DSM 180] gi|288895621|gb|ADC61457.1| protein of unknown function DUF150 [Allochromatium vinosum DSM 180] Length = 151 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 45/154 (29%), Positives = 76/154 (49%), Gaps = 10/154 (6%) Query: 22 AGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++ + + V+E + + V + + L+++++ + +TL DC +S +S +L Sbjct: 5 DSQLTLLARRVVEPLGYELVGVEYFQKGGGATLRVYIDH-ERGITLDDCTAVSHQLSGVL 63 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG+DRP+V F R+ G V + ++KL G ++G Sbjct: 64 DVEDPISDQYDLEVSSPGLDRPLVFPEHFERFAGSRVRIRLSEKIEGRRKLEGVLLGVVP 123 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G L ++R I S+ SARLI Sbjct: 124 GGVALRADERDW--------EIPLTSIDSARLIP 149 >gi|91228265|ref|ZP_01262201.1| hypothetical protein V12G01_21798 [Vibrio alginolyticus 12G01] gi|91188142|gb|EAS74444.1| hypothetical protein V12G01_21798 [Vibrio alginolyticus 12G01] Length = 141 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 34/148 (22%), Positives = 73/148 (49%), Gaps = 10/148 (6%) Query: 28 VIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 ++ + + V + + + L+I+++ + + + DC E+S +S +LDVE+ I Sbjct: 1 MLDAPVAASGYELVGLEFIRAGAHSTLRIYIDH-ENGINVDDCAEVSHQVSAVLDVEDPI 59 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE 146 Y LEVSSPG++RP+ + + + ++ GH V+ + ++ +++K G I G + Sbjct: 60 SVAYSLEVSSPGLERPLFKAAHYEQFIGHEVSIVLKMAVANRRKWKGIIHGVDGETVTIT 119 Query: 147 KEKRGEKDMNELQIAISFDSLLSARLIV 174 + + E + ++ A LI Sbjct: 120 VDGQQE--------EFALSNISKANLIP 139 >gi|295399849|ref|ZP_06809830.1| protein of unknown function DUF150 [Geobacillus thermoglucosidasius C56-YS93] gi|312111639|ref|YP_003989955.1| hypothetical protein GY4MC1_2648 [Geobacillus sp. Y4.1MC1] gi|294978252|gb|EFG53849.1| protein of unknown function DUF150 [Geobacillus thermoglucosidasius C56-YS93] gi|311216740|gb|ADP75344.1| protein of unknown function DUF150 [Geobacillus sp. Y4.1MC1] Length = 157 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 77/159 (48%), Gaps = 6/159 (3%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQA 75 + + ++ P++ +M V I ++ KN L++F++ D+ + + C +S+ Sbjct: 1 MSKKVTSIVEELVTPILADMDLELVDIEYVKEGKNWFLRVFIDSDE-GVDIEQCGTVSEK 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LD + I +Y LEVSSPG +RP+ + +DF R G V + +++ G++ Sbjct: 60 LSEKLDEVDPIPHNYFLEVSSPGAERPLKKPADFTRAIGKHVYIKTYEPIEGEKEFEGEL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G + + + K I I ++ + SARL V Sbjct: 120 TGFDGKIVSVTVKDKTRKK----TIDIPYEKVASARLAV 154 >gi|332306995|ref|YP_004434846.1| hypothetical protein Glaag_2637 [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174324|gb|AEE23578.1| protein of unknown function DUF150 [Glaciecola agarilytica 4H-3-7+YE-5] Length = 152 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 37/160 (23%), Positives = 81/160 (50%), Gaps = 10/160 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 L ++ ++ +E + F V I + K+ ++++++ D +T+ C E+S +S Sbjct: 2 SQLEQKLTEMLTAPVEALGFEMVGIEFVRAGKHSTMRVYIDHPD-GITVDHCAEVSHQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I Y LEVSSPG++RP+ + ++ G VV + + GD++ GK++ Sbjct: 61 AVLDVEDPINTEYNLEVSSPGMERPLFKLQHYIDSVGEVVTLRLKMPMGDRRNFKGKLLS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 ++ +E + + ++F ++ ++ T + Sbjct: 121 EADGMLTIEVDN--------QEFVLAFANIEKGNVVPTFD 152 >gi|256821529|ref|YP_003145492.1| hypothetical protein Kkor_0303 [Kangiella koreensis DSM 16069] gi|256795068|gb|ACV25724.1| protein of unknown function DUF150 [Kangiella koreensis DSM 16069] Length = 150 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 76/157 (48%), Gaps = 10/157 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M ++ +I+P +E F + L + K+ +L++F++ + +++ +C E+S +S Sbjct: 1 MARNAELEKIIRPAVEAAGFEFWGLEHLAQGKHSVLRVFIDH-ENGISVDNCAEVSHQVS 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I+G Y LE+SSPG+DRP+ + F R+ G ++ + ++K G I Sbjct: 60 GVLDVEDPIKGLYNLEISSPGMDRPLFNEQQFARYVGEDAEVKLSVPLNGRRKFKGTIEQ 119 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L + I+ + A L+ Sbjct: 120 VEAGVLLLLVDGE--------VYEINCHQIDKAHLVP 148 >gi|49610183|emb|CAG73625.1| conserved hypothetical protein [Pectobacterium atrosepticum SCRI1043] Length = 140 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 74/147 (50%), Gaps = 9/147 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I + + + V I + + L+I+++ +D +T+ DC ++S +S +LDVE+ I Sbjct: 1 MISAPVAALGYELVGIEFIRSRQSTLRIYIDSED-GITVDDCADVSHQVSAVLDVEDPIT 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LEVSSPG++RP+ + +L + G VA + ++ +++K +G I + Sbjct: 60 VAYNLEVSSPGLERPLFTAAHYLHFVGEEVAVVLRMAVQNRRKWLGVIKAVDGEMITITV 119 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 E + E + ++ A L+ Sbjct: 120 EGKDEV--------FALSNIQKANLVP 138 >gi|88705683|ref|ZP_01103393.1| conserved hypothetical protein [Congregibacter litoralis KT71] gi|88700196|gb|EAQ97305.1| conserved hypothetical protein [Congregibacter litoralis KT71] Length = 167 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 78/175 (44%), Gaps = 11/175 (6%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVER 59 M+ F+ + + R + +++ P +E + F ++ K+ +L++++E Sbjct: 1 MDQRRFVVAADDRRRAM-SARENKLQALLAPTVEALGFELWGTEYLIQGKHSVLRLYIES 59 Query: 60 DDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVAC 119 + + + DC +S+ + +LDVE I G Y LEVSSPG+DR + R + + G V Sbjct: 60 -ENGVQVTDCAAVSEQVGALLDVEEPISGEYVLEVSSPGVDRRLFRLEQYPGYVGEEVEL 118 Query: 120 EIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + ++K G + G + L + + + F + A+L + Sbjct: 119 RLRSPFEGRRKFKGILRGVEDEDIVLLVDD--------HEYLLPFGDVDRAQLTL 165 >gi|297584077|ref|YP_003699857.1| hypothetical protein Bsel_1784 [Bacillus selenitireducens MLS10] gi|297142534|gb|ADH99291.1| protein of unknown function DUF150 [Bacillus selenitireducens MLS10] Length = 156 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 6/159 (3%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQA 75 + + + +P++ E V I ++ KN L++F++ + + L C +S+ Sbjct: 1 MSSAITDKVEKLAEPIVSEAGLELVDIEFVKEGKNWFLRVFIDGPE-GVDLDHCSTVSER 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LD + IE Y LEVSSPG +RP+ + D + G V D++ GK+ Sbjct: 60 LSEKLDQSDPIEQAYYLEVSSPGAERPLKKAEDITKAIGKNVHVATYAPIEDEKVFEGKL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +G +E + Q+ I +D + ARL V Sbjct: 120 IGFDGETLTVE----QKIKTRVSQVEIPYDKVSKARLAV 154 >gi|85712988|ref|ZP_01044026.1| Alpha-hemolysin-like protein, hlyA family protein [Idiomarina baltica OS145] gi|85693157|gb|EAQ31117.1| Alpha-hemolysin-like protein, hlyA family protein [Idiomarina baltica OS145] Length = 167 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 77/158 (48%), Gaps = 10/158 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + +S +++P +E + F I + K L+I++++++ +++ DC ++S +S + Sbjct: 19 IEERLSDMLRPAVEALGFELWGIEFVRAGKFSTLRIYIDKEE-GISVDDCADVSYQVSSV 77 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG++RP + + G VA E+ ++ +K+K + G Sbjct: 78 LDVEDPINTEYNLEVSSPGMERPFFSIAQMQPYIGETVAFELTVAKQNKRKFQAVLEGIE 137 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 L + + + + A L+ + + Sbjct: 138 NDQLQLSV--------GQESLTVGMHEIKKAHLVPSFD 167 >gi|329847355|ref|ZP_08262383.1| hypothetical protein ABI_04190 [Asticcacaulis biprosthecum C19] gi|328842418|gb|EGF91987.1| hypothetical protein ABI_04190 [Asticcacaulis biprosthecum C19] Length = 205 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 11/171 (6%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLE----EKNLLLQIFVERD-DGNMTLRDC 69 + + + P+ E+ V++ L+ LQI ER DG + + C Sbjct: 1 MRAKTSEDRKLIDIFDPIANELGLNIVRVRLMGSNKPGGARRLQIMAERQSDGEINVNQC 60 Query: 70 EELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ 129 LS+A+S LD + I G Y LEVSSPGIDRP+ R DF + G+ E+ + ++ Sbjct: 61 ARLSRALSAFLDEADPISGDYVLEVSSPGIDRPLTRLKDFETYQGYEARIELDRLAEGRK 120 Query: 130 KLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 + G + G ++ E + F ++ A+L++TDEL++ Sbjct: 121 RFRGTLAGVEGDHIAIDLEG------EPETALMPFAWVIDAKLVLTDELMK 165 >gi|255066626|ref|ZP_05318481.1| hypothetical protein NEISICOT_01636 [Neisseria sicca ATCC 29256] gi|255049210|gb|EET44674.1| hypothetical protein NEISICOT_01636 [Neisseria sicca ATCC 29256] Length = 189 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 44/173 (25%), Positives = 82/173 (47%), Gaps = 16/173 (9%) Query: 3 STHFLHSKYEP---RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVER 59 S F + P +F G DI ++++ + + + V L + L++F+++ Sbjct: 24 SQFFNFDEKWPLGHFLFMYSGRFMDIQTILEKTLPGLGYELVDFELTAQG--TLRVFIDK 81 Query: 60 DDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVAC 119 +G +T+ DC +S +S + VE+I + LE+SSPG+DRP+ + +DF+R+ G Sbjct: 82 -EGGITVEDCATVSNHLSRVFMVEDI--DYKNLEISSPGLDRPLKKAADFVRFAGQQAKI 138 Query: 120 EIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + L ++ IG+I G L + + I D++ ARL Sbjct: 139 KTRLPVDGQKNFIGRIEGCENDTVTLSFDGK--------TAQIGLDNIDKARL 183 >gi|126664887|ref|ZP_01735871.1| hypothetical protein MELB17_03575 [Marinobacter sp. ELB17] gi|126631213|gb|EBA01827.1| hypothetical protein MELB17_03575 [Marinobacter sp. ELB17] Length = 153 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 80/156 (51%), Gaps = 9/156 (5%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++PV+E + + I + LL++F++ + + + DCE++S+ +S ++D Sbjct: 6 KQLEDILRPVVEGLGYEYWGIEFRARGHESLLRLFIDDVEKGIGIEDCEKVSRQVSSVMD 65 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I+ Y LEVSSPG+DRP+ + + + GH V + ++ ++K G + G Sbjct: 66 VEDPIQSEYTLEVSSPGMDRPLFELAQYQAFVGHKVQIRLRMAFEGRRKFQGLLNGIEG- 124 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 +++ + + FDS+ A ++ E Sbjct: 125 -------DDVIVVVDDHEFLLPFDSIDKANIVPVFE 153 >gi|46578926|ref|YP_009734.1| hypothetical protein DVU0511 [Desulfovibrio vulgaris str. Hildenborough] gi|120603473|ref|YP_967873.1| hypothetical protein Dvul_2430 [Desulfovibrio vulgaris DP4] gi|51316683|sp|Q72EQ8|RIMP_DESVH RecName: Full=Ribosome maturation factor rimP gi|166987475|sp|A1VG80|RIMP_DESVV RecName: Full=Ribosome maturation factor rimP gi|46448338|gb|AAS94993.1| conserved hypothetical protein [Desulfovibrio vulgaris str. Hildenborough] gi|120563702|gb|ABM29446.1| protein of unknown function DUF150 [Desulfovibrio vulgaris DP4] gi|311232784|gb|ADP85638.1| protein of unknown function DUF150 [Desulfovibrio vulgaris RCH1] Length = 172 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 69/161 (42%), Gaps = 4/161 (2%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 L I+ + P + + I L ++++FV+ + +T+ C E+S+ Sbjct: 1 MTKQALDATIADMAGPFLASLGLELWGIELSYGGRTVVRLFVDGPE-GVTIDQCAEVSRH 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS---SGDKQKLI 132 + L+VE++I Y LEVSSPG++RP R + G + ++ ++K Sbjct: 60 VGLALEVEDVISSAYVLEVSSPGLERPFFRAEQMSPYVGRQIELTLIDPTPEWPGRRKFR 119 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 G+++ L E + E + S+ + A LI Sbjct: 120 GELLAVEGDTVVLRPEGAPAPEAEEAVLRTSWQGVRKANLI 160 >gi|108761060|ref|YP_630294.1| hypothetical protein MXAN_2065 [Myxococcus xanthus DK 1622] gi|122389560|sp|Q1DAM9|RIMP_MYXXD RecName: Full=Ribosome maturation factor rimP gi|108464940|gb|ABF90125.1| conserved hypothetical protein [Myxococcus xanthus DK 1622] Length = 161 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 42/160 (26%), Positives = 76/160 (47%), Gaps = 10/160 (6%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAI 76 + ++++P++ V + L E+ +L++F+++ G + L +C ++S+A+ Sbjct: 7 KQTVEERALALLEPIVAGEGLELVDLEFLREREGWVLRLFIDKPGGRVGLDECTQVSRAV 66 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD--KQKLIGK 134 P LDVE+ I Y LEVSSPG+DRP+ + + F R G V + G+ ++ G Sbjct: 67 DPSLDVEDFIPHEYNLEVSSPGVDRPLRKPTHFERVKGQQVKVKTFGPVGEPPRKNFTGT 126 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + G +E E G I F + A L Sbjct: 127 LTEVAGDGISVEVEGAG-------TFHILFKDIAKANLEF 159 >gi|319649524|ref|ZP_08003680.1| hypothetical protein HMPREF1013_00284 [Bacillus sp. 2_A_57_CT2] gi|317398686|gb|EFV79368.1| hypothetical protein HMPREF1013_00284 [Bacillus sp. 2_A_57_CT2] Length = 155 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 80/157 (50%), Gaps = 6/157 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + + ++ P+++E++ V I ++ K+ L++F+++ + + + +C +S+ +S Sbjct: 2 SKVTETVEQLVTPIVDELNLELVDIEYVKEGKDWFLRVFIDK-ETGVDIEECGTVSERLS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD E+ I +Y LEVSSPG +RP+ + SDF++ G V + ++ G + Sbjct: 61 EKLDAEDPIPYNYFLEVSSPGAERPLKKDSDFVKAVGKNVFIKTYEPIDGEKTFEGVLTQ 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + K +I I ++ + +ARL V Sbjct: 121 FDGETVTVEVTIKTRKK----RIEIPYEKVANARLAV 153 >gi|66047409|ref|YP_237250.1| hypothetical protein Psyr_4182 [Pseudomonas syringae pv. syringae B728a] gi|71733923|ref|YP_276313.1| hypothetical protein PSPPH_4191 [Pseudomonas syringae pv. phaseolicola 1448A] gi|289676022|ref|ZP_06496912.1| hypothetical protein PsyrpsF_22296 [Pseudomonas syringae pv. syringae FF5] gi|34223096|sp|P95578|RIMP_PSEU2 RecName: Full=Ribosome maturation factor rimP gi|91208357|sp|Q48E75|RIMP_PSE14 RecName: Full=Ribosome maturation factor rimP gi|1835603|gb|AAC45133.1| 15 kDa protein [Pseudomonas syringae pv. syringae] gi|63258116|gb|AAY39212.1| Protein of unknown function DUF150 [Pseudomonas syringae pv. syringae B728a] gi|71554476|gb|AAZ33687.1| YhbC-like protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 158 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 76/156 (48%), Gaps = 10/156 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + ++ PV+ + ++ I K+ +L+I++++ +G + + DC +S+ IS +LD Sbjct: 12 EQLQDLLAPVVVALGYQCWGIDFSSQGKHSVLRIYIDK-EGGVLVDDCAIVSRQISGVLD 70 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I Y LEVSSPG++RP+ F + G V ++ ++ G + G Sbjct: 71 VEDPISTEYTLEVSSPGMERPLFTIEQFASYAGEQVKIKLRSPFEGRRNFQGLLRG---- 126 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 +E+ + + + + D + A +I T + Sbjct: 127 ----VEEQDVVVQVEDHEFLLPIDMIDKANIIPTFD 158 >gi|319787429|ref|YP_004146904.1| hypothetical protein Psesu_1831 [Pseudoxanthomonas suwonensis 11-1] gi|317465941|gb|ADV27673.1| protein of unknown function DUF150 [Pseudoxanthomonas suwonensis 11-1] Length = 192 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 75/163 (46%), Gaps = 17/163 (10%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGN--------MTLRDCEEL 72 +I ++ P +E + + + L L+++++ +T+ DCE + Sbjct: 5 TSEIVQLLAPTVESLGLELLGVEYLPAPGGATLRLYIDVPAAGEGEEPARTVTIEDCEAV 64 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+ +S LDV + I G+Y LEVSSPG+DRP+ F+R+ G + L +++L Sbjct: 65 SREVSAQLDVADPISGNYTLEVSSPGMDRPLFAAEHFIRFLGQQAKVGLKLPQDGRRRLQ 124 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 G I+ ++ + + ++ D++ ARL+ Sbjct: 125 GTILRVADGQVAFGLDN--------AEFVVALDNIDKARLVPD 159 >gi|257482263|ref|ZP_05636304.1| hypothetical protein PsyrptA_03277 [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289624600|ref|ZP_06457554.1| hypothetical protein PsyrpaN_05581 [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|298488454|ref|ZP_07006485.1| 30S ribosomal subunit maturation factor [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|302185430|ref|ZP_07262103.1| hypothetical protein Psyrps6_03769 [Pseudomonas syringae pv. syringae 642] gi|298157079|gb|EFH98168.1| 30S ribosomal subunit maturation factor [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320322530|gb|EFW78623.1| hypothetical protein PsgB076_21417 [Pseudomonas syringae pv. glycinea str. B076] gi|320330001|gb|EFW85988.1| hypothetical protein PsgRace4_10252 [Pseudomonas syringae pv. glycinea str. race 4] gi|330868244|gb|EGH02953.1| ribosome maturation protein RimP [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330875222|gb|EGH09371.1| ribosome maturation protein RimP [Pseudomonas syringae pv. glycinea str. race 4] gi|330888660|gb|EGH21321.1| ribosome maturation protein RimP [Pseudomonas syringae pv. mori str. 301020] gi|330895307|gb|EGH27645.1| ribosome maturation protein RimP [Pseudomonas syringae pv. japonica str. M301072PT] gi|330937944|gb|EGH41731.1| ribosome maturation protein RimP [Pseudomonas syringae pv. pisi str. 1704B] gi|330950307|gb|EGH50567.1| ribosome maturation protein RimP [Pseudomonas syringae Cit 7] gi|330969649|gb|EGH69715.1| ribosome maturation protein RimP [Pseudomonas syringae pv. aceris str. M302273PT] gi|330981088|gb|EGH79191.1| ribosome maturation protein RimP [Pseudomonas syringae pv. aptata str. DSM 50252] gi|330987053|gb|EGH85156.1| ribosome maturation protein RimP [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011497|gb|EGH91553.1| ribosome maturation protein RimP [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 152 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 76/156 (48%), Gaps = 10/156 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + ++ PV+ + ++ I K+ +L+I++++ +G + + DC +S+ IS +LD Sbjct: 6 EQLQDLLAPVVVALGYQCWGIDFSSQGKHSVLRIYIDK-EGGVLVDDCAIVSRQISGVLD 64 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I Y LEVSSPG++RP+ F + G V ++ ++ G + G Sbjct: 65 VEDPISTEYTLEVSSPGMERPLFTIEQFASYAGEQVKIKLRSPFEGRRNFQGLLRGV--- 121 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 +E+ + + + + D + A +I T + Sbjct: 122 -----EEQDVVVQVEDHEFLLPIDMIDKANIIPTFD 152 >gi|251792721|ref|YP_003007447.1| hypothetical protein NT05HA_0985 [Aggregatibacter aphrophilus NJ8700] gi|247534114|gb|ACS97360.1| protein YhbC [Aggregatibacter aphrophilus NJ8700] Length = 151 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 78/155 (50%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + ++Q +E++ I + L +++F+++ +G +T+ DC +S+ +S + Sbjct: 4 LEQKLQELVQGSVEDLGCELWGIECQRVGRYLTVRLFIDK-EGGVTVEDCAYVSRQVSAV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ + F R+ G + + + D++K G++ Sbjct: 63 LDVEDPIADKYNLEVSSPGLDRPLFTLNQFERYLGQEILLHLRIPVADRRKWQGQLAKIE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L + + + ++F ++ A +I Sbjct: 123 NDMITLIVDGK--------EQVLAFGNIQKANVIP 149 >gi|330830890|ref|YP_004393842.1| ribosome maturation factor rimP [Aeromonas veronii B565] gi|328806026|gb|AEB51225.1| Ribosome maturation factor rimP [Aeromonas veronii B565] Length = 145 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 77/152 (50%), Gaps = 10/152 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +++ + + F I + K+ L+++++ + +T+ +C E+S + I+DVE Sbjct: 1 MTDLLEAPVVALGFELWGIEFIRAGKHSTLRVYIDG-EQGVTVENCAEVSHQVGAIMDVE 59 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I Y LEVSSPG+DRP+ + + F ++ G A + +++ +++K G I Sbjct: 60 DPITEEYYLEVSSPGLDRPLFKVAHFEKYVGQEAAVTLRMATNNRRKFKGVIKAVQGDMI 119 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 L + + + ++F ++ A ++ Sbjct: 120 TLAVDGKDDV--------LAFTNIQKANIVPN 143 >gi|238918422|ref|YP_002931936.1| hypothetical protein NT01EI_0465 [Edwardsiella ictaluri 93-146] gi|238867990|gb|ACR67701.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 140 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 72/147 (48%), Gaps = 9/147 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I +E + F V I + ++ L+I+++ ++ +T+ +C ++S +S +LDVE+ I Sbjct: 1 MITAPVEALGFELVGIEFIRGRHSTLRIYIDSEE-GITVDNCADVSHQVSAVLDVEDPIS 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LEVSSPG++RP+ + R+ V + ++ +++K G I + Sbjct: 60 VAYYLEVSSPGMERPLFIAEHYTRFLNEEVTLVLRMAMQNRRKWQGIIKAVDGEMITVTV 119 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 + + E + ++ A L+ Sbjct: 120 DGKDEV--------FALSNVQKANLVP 138 >gi|147677600|ref|YP_001211815.1| hypothetical protein PTH_1265 [Pelotomaculum thermopropionicum SI] gi|259586176|sp|A5D2U8|RIMP_PELTS RecName: Full=Ribosome maturation factor rimP gi|146273697|dbj|BAF59446.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 153 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 10/160 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQ 74 + + V PV++E V + +E L+IF+++ G + + DC+ +S+ Sbjct: 1 MAREKVLELVKRVTLPVVQEAGLELVDVEYAKEGGRYYLRIFIDKP-GGVRIEDCQHVSE 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 I +LD + I Y LEVSSPGIDRP+ + D++R+ G + + ++K G+ Sbjct: 60 KIDRLLDELDPIPQSYFLEVSSPGIDRPLKKAGDYIRFAGRLARVKTFSPVEGRRKFTGR 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 I+G ++ E + +++I F + SARL V Sbjct: 120 IVGMHGEDVVMQVEGK--------EMSIPFKQIASARLEV 151 >gi|225181380|ref|ZP_03734824.1| protein of unknown function DUF150 [Dethiobacter alkaliphilus AHT 1] gi|225167961|gb|EEG76768.1| protein of unknown function DUF150 [Dethiobacter alkaliphilus AHT 1] Length = 151 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 48/157 (30%), Positives = 84/157 (53%), Gaps = 9/157 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 +A ++++ P+ E++ F V + ++E + ++L++F++R +G +TL C+E+S A+S Sbjct: 2 SNIAERVTAIADPLAEKLGFELVDVEYVKEGSQMILRVFIDR-EGGITLDHCQEMSHALS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + IE Y LEVSSPGI+RP+ + DF+R+ G V+ ++ K+K G + G Sbjct: 61 DELDRVDPIEQSYHLEVSSPGIERPLKKDEDFVRFAGKPVSIKLFAPLEGKKKYGGILRG 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E LE E + I + A L Sbjct: 121 LEEGEILLEVENN-------NLVRIPRTQVAKANLAF 150 >gi|237798561|ref|ZP_04587022.1| ribosome maturation protein RimP [Pseudomonas syringae pv. oryzae str. 1_6] gi|237803808|ref|ZP_04591393.1| ribosome maturation protein RimP [Pseudomonas syringae pv. oryzae str. 1_6] gi|237805250|ref|ZP_04591954.1| ribosome maturation protein RimP [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021414|gb|EGI01471.1| ribosome maturation protein RimP [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025788|gb|EGI05844.1| ribosome maturation protein RimP [Pseudomonas syringae pv. oryzae str. 1_6] gi|331026358|gb|EGI06413.1| ribosome maturation protein RimP [Pseudomonas syringae pv. oryzae str. 1_6] Length = 152 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 76/156 (48%), Gaps = 10/156 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + ++ PV+ + ++ I K+ +L+I++++ +G + + DC +S+ IS +LD Sbjct: 6 EQLQDLLAPVVVALGYQCWGIDFSSQGKHSVLRIYIDK-EGGVLVDDCAIVSRQISGVLD 64 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I Y LEVSSPG++RP+ F + G V ++ ++ G + G Sbjct: 65 VEDPISTEYTLEVSSPGMERPLFTIEQFASYAGEQVKIKLRSPFEGRRNFQGLLRG---- 120 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 +E+ + + + + D + A +I T + Sbjct: 121 ----VEEQDVVVQVEDHEFLLPIDLIDKANIIPTFD 152 >gi|261820126|ref|YP_003258232.1| hypothetical protein Pecwa_0806 [Pectobacterium wasabiae WPP163] gi|261604139|gb|ACX86625.1| protein of unknown function DUF150 [Pectobacterium wasabiae WPP163] Length = 140 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 72/147 (48%), Gaps = 9/147 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I + + + V I + + L+I+++ +D +T+ DC ++S +S +LDVE+ I Sbjct: 1 MISAPVAALGYELVGIEFIRSRQSTLRIYIDSED-GITVDDCADVSHQVSAVLDVEDPIT 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LEVSSPG++RP+ +L + G V + ++ +++K +G I + Sbjct: 60 VAYNLEVSSPGLERPLFTAEHYLHFIGEEVTVVLRMAVQNRRKWLGVINAVDGEMITITV 119 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 E + E + ++ A L+ Sbjct: 120 EGKDEV--------FALSNIQKANLVP 138 >gi|169831085|ref|YP_001717067.1| hypothetical protein Daud_0922 [Candidatus Desulforudis audaxviator MP104C] gi|226696028|sp|B1I359|RIMP_DESAP RecName: Full=Ribosome maturation factor rimP gi|169637929|gb|ACA59435.1| protein of unknown function DUF150 [Candidatus Desulforudis audaxviator MP104C] Length = 154 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 44/160 (27%), Positives = 76/160 (47%), Gaps = 9/160 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 +AG + + +P+ E V++ E L++F+++ G + L DCE +S+ Sbjct: 1 MAASDIAGRVEEMARPLAERKGLELVEVQYVTEGGRRYLRVFLDKP-GGINLDDCEAVSR 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 + LD + I Y LEVSSPG++RP+ R D++R+ G +V ++K G+ Sbjct: 60 ELDRALDDVDFIPHSYVLEVSSPGLERPLKRAEDYVRFKGRLVQINTYAPLNGRKKFSGR 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +MG+ E G + I +D + ARL V Sbjct: 120 LMGSGEEGVTILL-------GEHELATIPWDQISKARLAV 152 >gi|330958051|gb|EGH58311.1| ribosome maturation protein RimP [Pseudomonas syringae pv. maculicola str. ES4326] Length = 152 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 76/156 (48%), Gaps = 10/156 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + ++ PV+ + ++ I K+ +L+I++++ +G + + DC +S+ IS +LD Sbjct: 6 EQLQDLLAPVVVALGYQCWGIDFSSQGKHSVLRIYIDK-EGGVLVDDCAIVSRQISGVLD 64 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I Y LEVSSPG++RP+ F + G V ++ ++ G + G Sbjct: 65 VEDPITTEYTLEVSSPGMERPLFTIEQFASYAGEQVKIKLRSPFEGRRNFQGLLRG---- 120 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 +E+ + + + + D + A +I T + Sbjct: 121 ----VEEQDVVVQVEDHEFLLPIDLIDKANIIPTFD 152 >gi|331007795|ref|ZP_08330908.1| clustered with transcription termination protein NusA [gamma proteobacterium IMCC1989] gi|330418394|gb|EGG92947.1| clustered with transcription termination protein NusA [gamma proteobacterium IMCC1989] Length = 163 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 82/168 (48%), Gaps = 20/168 (11%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVER-----------DDGNMTL 66 + ++++I+PV+E + + + ++ + L+I++E+ + + L Sbjct: 2 SSVQNKLTALIEPVVESLGCQLWGLEYLVQGRQATLRIYIEKAADSESSDDTKKESGVGL 61 Query: 67 RDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 DCE++S+ +S +LDVE+ I HY LEVSSPG+DRP+ + + G V+ ++ Sbjct: 62 HDCEKVSRQVSSVLDVEDPISSHYTLEVSSPGMDRPLFLLAHYHSSVGEKVSIKLSRKFD 121 Query: 127 DKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 D++ IG I G + L E E + + + + A +I Sbjct: 122 DRKNFIGVIAGVEDDEVILRVE--------EEEYVLPIELIDKANIIP 161 >gi|109898013|ref|YP_661268.1| hypothetical protein Patl_1693 [Pseudoalteromonas atlantica T6c] gi|122972050|sp|Q15V74|RIMP_PSEA6 RecName: Full=Ribosome maturation factor rimP gi|109700294|gb|ABG40214.1| protein of unknown function DUF150 [Pseudoalteromonas atlantica T6c] Length = 152 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 81/160 (50%), Gaps = 10/160 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 L ++ ++ +E + F V I + K+ ++++++ D +++ C E+S +S Sbjct: 2 SQLEQKLTEMLTAPVEALGFEMVGIEFVRAGKHSTMRVYIDHPD-GISVDHCAEVSHQVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I Y LEVSSPG++RP+ + ++ G VV + + GD++ GK++ Sbjct: 61 AVLDVEDPINTEYNLEVSSPGMERPLFKLQHYIESVGEVVTLRLKMPMGDRRNFKGKLLS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 ++ +E + + ++F ++ ++ T + Sbjct: 121 EADGMLTIEVDN--------QEFVLAFANIEKGNVVPTFD 152 >gi|330807481|ref|YP_004351943.1| Sm_like superfamily [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375589|gb|AEA66939.1| Conserved hypothetical protein; Sm_like superfamily [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 152 Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 77/156 (49%), Gaps = 10/156 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++ PV+ + + I ++ LL++++++ +G + + DC +S+ IS +LD Sbjct: 6 EQLQALLAPVVVALGYECWGIEFSAQGRHSLLRVYIDK-EGGVLVDDCAIVSRQISGVLD 64 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I Y LEVSSPG++RP+ F + G V ++ ++ G + G Sbjct: 65 VEDPITSEYTLEVSSPGMERPLFTLEQFASFAGEQVKIKLRSPFEGRRNFQGLLRG---- 120 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 +E+ +++ + + D + A +I + + Sbjct: 121 ----VEEQDVVVQVDDHEFLLPIDMIDKANIIPSFD 152 >gi|330504829|ref|YP_004381698.1| hypothetical protein MDS_3915 [Pseudomonas mendocina NK-01] gi|328919115|gb|AEB59946.1| hypothetical protein MDS_3915 [Pseudomonas mendocina NK-01] Length = 152 Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 78/156 (50%), Gaps = 10/156 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++ PVIE + ++ I + ++ LL++++++ D + + DCE +S+ +S +LD Sbjct: 6 EQLQALLAPVIEALGYQCWGIEFLSQGRHSLLRVYIDKAD-GILIDDCEIVSRQLSGVLD 64 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I Y LEVSSPG+DRP+ F G V ++ ++ G + G Sbjct: 65 VEDPISSEYTLEVSSPGMDRPLFTLEQFAAHVGEQVKIKLRSPFDGRRNFQGLLRG---- 120 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 +E+ +++ + + D + A +I + Sbjct: 121 ----VEEQDVVVQVDDHEYLLPIDLIDKANIIPRFD 152 >gi|154686076|ref|YP_001421237.1| hypothetical protein RBAM_016430 [Bacillus amyloliquefaciens FZB42] gi|189038972|sp|A7Z4T0|RIMP_BACA2 RecName: Full=Ribosome maturation factor rimP gi|154351927|gb|ABS74006.1| YlxS [Bacillus amyloliquefaciens FZB42] Length = 156 Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 80/160 (50%), Gaps = 6/160 (3%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQA 75 + + + QP+++++ V I ++E N L++F++ + + + +C ++S+A Sbjct: 1 MSKKVTDTVQEMAQPILDDLQLELVDIEFVKEGQNWFLRVFIDS-ENGVDIEECAKVSEA 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LD + I +Y LEVSSPG +RP+ +K+DF + G V + + GK+ Sbjct: 60 LSEKLDEADPITQNYFLEVSSPGAERPLKKKADFEKSLGKNVYMKTYEPIDGLKVFEGKL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +E + K ++ I ++ + +ARL VT Sbjct: 120 AEFDGQTVTIEMTVKTRKK----RVNIPYEKIANARLAVT 155 >gi|149909282|ref|ZP_01897938.1| hypothetical protein PE36_05678 [Moritella sp. PE36] gi|149807599|gb|EDM67547.1| hypothetical protein PE36_05678 [Moritella sp. PE36] Length = 152 Score = 128 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 74/156 (47%), Gaps = 10/156 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 L ++ +++P +E + F V I K+ L ++++ + + + DC ++S +S Sbjct: 3 SLEQTLTDLLEPTVEMLGFELVGIEFTRAGKHSTLLVYIDH-ENGIFVDDCSKVSHQLSA 61 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 I+DVE+ I Y LEVSSPG++RP+ + + + + G + + ++ ++KL G I Sbjct: 62 IMDVEDPISTEYFLEVSSPGMERPLFKVAHYQEYCGSEIKALLRMAVNGRRKLRGVIKSV 121 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + E + + A ++ Sbjct: 122 DGDMITVTIDGKDEV--------FAHANFQKANIVP 149 >gi|296108418|ref|YP_003620119.1| putative protein conserved in bacteria [Legionella pneumophila 2300/99 Alcoy] gi|295650320|gb|ADG26167.1| putative protein conserved in bacteria [Legionella pneumophila 2300/99 Alcoy] gi|307611646|emb|CBX01333.1| hypothetical protein LPW_30281 [Legionella pneumophila 130b] Length = 131 Score = 128 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 41/138 (29%), Positives = 71/138 (51%), Gaps = 10/138 (7%) Query: 36 MSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEV 94 M + + K+ LL+I++++ D + + DC+E+S+ +S +LDVE+ I GHY LE+ Sbjct: 1 MGYELWGCEYLSQGKHSLLRIYIDKPD-GIGIDDCQEVSKQVSAMLDVEDPIPGHYSLEI 59 Query: 95 SSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKD 154 SSPGI RP+ + R+ G+ + + K+KL G I+ SE L+ + Sbjct: 60 SSPGIPRPLFSIWQYQRYLGYEIHVKTFKPVNGKRKLSGIIVSASEDTIVLDINNEHQ-- 117 Query: 155 MNELQIAISFDSLLSARL 172 I +++ A L Sbjct: 118 ------EILLSNIVKANL 129 >gi|148244224|ref|YP_001218918.1| hypothetical protein COSY_0057 [Candidatus Vesicomyosocius okutanii HA] gi|166919105|sp|A5CXX4|RIMP_VESOH RecName: Full=Ribosome maturation factor rimP gi|146326051|dbj|BAF61194.1| conserved hypothetical protein [Candidatus Vesicomyosocius okutanii HA] Length = 153 Score = 128 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 8/156 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I+ +I+PVIE M + + I + K +L+IF++ + ++++ DCE +S+ +S I Sbjct: 4 VTDKITHLIKPVIEGMGYELLGIEYVASGKYSILRIFIDT-NKSISVNDCEIVSRQLSSI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 D+E I G Y LEVSSPGI+RP+ K + + G V + + G I S Sbjct: 63 FDIEEPISGQYNLEVSSPGIERPLFHKGHYQCFLGFNVKLHMFRPISGQSNFFGVIGSVS 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 E +E I + D + A L+V Sbjct: 123 EINNTIELVGEL------GAIILDIDLIKKANLVVD 152 >gi|262042728|ref|ZP_06015882.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039953|gb|EEW41070.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 140 Score = 128 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 73/147 (49%), Gaps = 9/147 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 ++ +E + F V I + + L+I+++ +D + + DC ++S +S ++DVE+ I Sbjct: 1 MLTAPVEALGFELVGIEFIRGRTSTLRIYIDSED-GINVDDCADVSHQVSAVMDVEDPIT 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LEVSSPG+DRPM + R+ G VA + ++ +++KL G I + Sbjct: 60 VAYNLEVSSPGLDRPMFTAEHYQRFTGEEVALVLRMAVQNRRKLQGIIKAVDGEMITVTV 119 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 E + E + ++ A L+ Sbjct: 120 EGKDEV--------FALSNIQKANLVP 138 >gi|325294241|ref|YP_004280755.1| ribosome maturation factor rimP [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064689|gb|ADY72696.1| Ribosome maturation factor rimP [Desulfurobacterium thermolithotrophum DSM 11699] Length = 162 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 44/155 (28%), Positives = 84/155 (54%), Gaps = 7/155 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 + + ++ P++EE F V I + E +L+I+ +R +G +T+ DC+ +S+ I Sbjct: 6 KEIVDRVKELLFPILEEGGFELVDIEFVREPIGWVLRIYADRPEGGITISDCQWISERIG 65 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LD+E++I Y LEVSSPG++RP+ + DF R G VV + +++ G+++ Sbjct: 66 TLLDIEDLIPHAYNLEVSSPGLNRPLKNQRDFERNLGTVVKIKTHEPMDNQRNFKGEVIS 125 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 SE+ + ++ I F+++ SAR+ Sbjct: 126 ASESAVVI------HDVSRNAEVEIPFENIKSARI 154 >gi|188586066|ref|YP_001917611.1| protein of unknown function DUF150 [Natranaerobius thermophilus JW/NM-WN-LF] gi|226734162|sp|B2A393|RIMP_NATTJ RecName: Full=Ribosome maturation factor rimP gi|179350753|gb|ACB85023.1| protein of unknown function DUF150 [Natranaerobius thermophilus JW/NM-WN-LF] Length = 154 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 40/152 (26%), Positives = 78/152 (51%), Gaps = 9/152 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 I ++I+P + ++ + V + L+ E +L+++++ + L DCE +S ++ +LD Sbjct: 9 QIENIIEPAVRDLGYDLVDVELIMENQKWVLRVYIDH-GKGIGLDDCELVSNSLDQLLDE 67 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 + I Y LEVSSPG +RP+ +K DF+ + G V + + ++ GK++G + Sbjct: 68 HDPIPHSYVLEVSSPGAERPLKKKKDFVNFAGKKVQIKTYVKLDGRKNFKGKLLGLEDEH 127 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 LE N ++ I D + A L++ Sbjct: 128 VVLE-------TFNSGEVKIPLDKIAKANLLL 152 >gi|146308625|ref|YP_001189090.1| hypothetical protein Pmen_3610 [Pseudomonas mendocina ymp] gi|166990870|sp|A4XYE2|RIMP_PSEMY RecName: Full=Ribosome maturation factor rimP gi|145576826|gb|ABP86358.1| protein of unknown function DUF150 [Pseudomonas mendocina ymp] Length = 152 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 78/156 (50%), Gaps = 10/156 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++ PVIE + ++ I + ++ LL++++++ D + + DCE +S+ +S +LD Sbjct: 6 EQLQALLAPVIEALGYQCWGIEFLSQGRHSLLRVYIDKAD-GILIDDCEIVSRQLSGVLD 64 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I Y LEVSSPG+DRP+ F G V ++ ++ G + G Sbjct: 65 VEDPISSEYTLEVSSPGMDRPLFTLEQFAAHVGEQVKIKLRSPFEGRRNFQGLLRG---- 120 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 +E+ +++ + + D + A +I + Sbjct: 121 ----VEEQDVVVQVDDHEYLLPIDLIDKANIIPRFD 152 >gi|91208372|sp|Q3KI86|RIMP_PSEPF RecName: Full=Ribosome maturation factor rimP Length = 158 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 77/156 (49%), Gaps = 10/156 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 ++ +++ PV+ + + I ++ +L++++++ +G + + DC +S+ IS +LD Sbjct: 12 EELQALLAPVVVALGYECWGIEFSAQGRHSMLRVYIDK-EGGVLVDDCAIVSRQISGVLD 70 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I Y LEVSSPG++RP+ F ++ G V ++ ++ G + G Sbjct: 71 VEDPISVEYTLEVSSPGMERPLFTLEQFAKYVGEQVKIKLRSPFEGRRNFQGLLRG---- 126 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 +E+ + + + D + A +I + + Sbjct: 127 ----VEEQDVVVQVENHEFLLPIDMIDKANIIPSFD 158 >gi|229918665|ref|YP_002887311.1| hypothetical protein EAT1b_2952 [Exiguobacterium sp. AT1b] gi|259585773|sp|C4L660|RIMP_EXISA RecName: Full=Ribosome maturation factor rimP gi|229470094|gb|ACQ71866.1| protein of unknown function DUF150 [Exiguobacterium sp. AT1b] Length = 156 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 73/158 (46%), Gaps = 6/158 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 + + S+ P++E + V + ++E L++++++ G + L DC +++ +S Sbjct: 2 SKITEVVESIALPIVERENMELVDVEFVKEGPDWFLRVYIDKP-GGVDLDDCVNINEQLS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 L+ + IE Y L+VSSPG +RP+ + SDF R G V + ++ G + Sbjct: 61 EKLNETDPIEQAYYLDVSSPGAERPLKKPSDFERAVGKNVYMKTFAPIDGAKEFEGILTA 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +E + +++ D + ARL VT Sbjct: 121 YDGETVVIET----RIKTRKKAVSLPVDKIAQARLAVT 154 >gi|221232983|ref|YP_002515419.1| hypothetical protein CCNA_00044 [Caulobacter crescentus NA1000] gi|259585738|sp|B8GX01|RIMP_CAUCN RecName: Full=Ribosome maturation factor rimP gi|220962155|gb|ACL93511.1| hypothetical cytosolic protein [Caulobacter crescentus NA1000] Length = 191 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 50/181 (27%), Positives = 88/181 (48%), Gaps = 12/181 (6%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERD------DGNMTLR 67 + G D+ ++ PV E + + V++ L+ + LQI E G+M + Sbjct: 1 MRGKTQEDRDLIEMLDPVAESLGYEIVRLRLMGGTEQRRLQIMAEHPLLEDGSGGDMNVE 60 Query: 68 DCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD 127 DC +LS+A+S +LD + I G Y LEVSSPGIDRP+ R DF + G E+ + Sbjct: 61 DCAKLSRAVSEVLDAADPIAGEYTLEVSSPGIDRPLTRLKDFDDYAGLEARIELDRVAEG 120 Query: 128 KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYG 187 +++ G++ G + L E +++ + F ++ A+L++TD L+ Sbjct: 121 RKRFKGELAGVEDDQVGLNIEGE-----DDVTVYFPFAWVIDAKLVMTDALMERGAKQRA 175 Query: 188 S 188 + Sbjct: 176 A 176 >gi|165936752|ref|ZP_02225319.1| protein YhbC [Yersinia pestis biovar Orientalis str. IP275] gi|165915401|gb|EDR34011.1| protein YhbC [Yersinia pestis biovar Orientalis str. IP275] Length = 134 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 68/141 (48%), Gaps = 9/141 (6%) Query: 34 EEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLE 93 E + + V I + + L+I+++ DD +T+ C ++S +S +LDVE+ I Y LE Sbjct: 1 EALGYELVGIEFIRGRQSTLRIYIDSDD-GITVDACADVSHQVSAVLDVEDPITVAYNLE 59 Query: 94 VSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEK 153 VSSPG+DRPM + R+ G V + ++ +++K G I + + + E Sbjct: 60 VSSPGLDRPMFTAEHYTRYLGEEVTLVLRMAMQNRRKWQGIIKAVDGEMITVTVDGKDEV 119 Query: 154 DMNELQIAISFDSLLSARLIV 174 + ++ A L+ Sbjct: 120 --------FALSNIQKANLVP 132 >gi|89098597|ref|ZP_01171479.1| hypothetical protein B14911_00370 [Bacillus sp. NRRL B-14911] gi|89086559|gb|EAR65678.1| hypothetical protein B14911_00370 [Bacillus sp. NRRL B-14911] Length = 156 Score = 127 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 76/158 (48%), Gaps = 6/158 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + + ++ P+++E++ V I ++ K L++F+++ + + + +C +S+ +S Sbjct: 2 SKVTETVEELVTPIVDELNLELVDIEYVKEGKEWFLRVFIDK-EQGVDIEECGLVSERLS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + I +Y LEVSSPG +RP+ ++ D+ G V + ++ GK+ Sbjct: 61 EKLDELDPIPYNYFLEVSSPGAERPLKKEKDYKSAIGKNVLIKTYEPIDGEKTFEGKLTQ 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +E I+I ++ + +ARL VT Sbjct: 121 FDGETVTVEV----RVKTRIKTISIPYEKVANARLAVT 154 >gi|329896245|ref|ZP_08271423.1| clustered with transcription termination protein NusA [gamma proteobacterium IMCC3088] gi|328921916|gb|EGG29283.1| clustered with transcription termination protein NusA [gamma proteobacterium IMCC3088] Length = 155 Score = 127 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 78/155 (50%), Gaps = 10/155 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 +++ +++ +E M F + + KN LL+++++R + + + DC ++S+ IS Sbjct: 6 TKKEAELADLLRATVEAMGFALWGLEFRAQGKNSLLRVYIDR-EAGVQVDDCAQVSRQIS 64 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ILDVE+ I G Y LEVSSPGIDR + ++ G + ++ + ++ G ++G Sbjct: 65 GILDVEDPIAGEYNLEVSSPGIDRLLFSLEQCQQYVGEWLEVKLRVPFEGRKNFNGTLVG 124 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + + + FDS+ A++ Sbjct: 125 IEDQDVVVRIDDD--------EYVLPFDSIDKAKV 151 >gi|152976183|ref|YP_001375700.1| hypothetical protein Bcer98_2469 [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189039695|sp|A7GRE7|RIMP_BACCN RecName: Full=Ribosome maturation factor rimP gi|152024935|gb|ABS22705.1| protein of unknown function DUF150 [Bacillus cytotoxicus NVH 391-98] Length = 156 Score = 127 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 43/160 (26%), Positives = 82/160 (51%), Gaps = 6/160 (3%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQA 75 D + + ++ QP++EE++ V + ++ K+ L++F++ + + + +C +S+ Sbjct: 1 MDKKVTEVVEALAQPIVEELNLELVDVEYVKEGKDWFLRVFIDS-ETGVDIEECGAVSER 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ GK+ Sbjct: 60 LSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFEQAVGSQVAIKTYEPIDGEKMFEGKL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + T L + K +I I D + +ARL VT Sbjct: 120 LSYDGTTITLLLTIKTRKK----EIQIPMDKVANARLAVT 155 >gi|289646959|ref|ZP_06478302.1| hypothetical protein Psyrpa2_04287 [Pseudomonas syringae pv. aesculi str. 2250] Length = 152 Score = 127 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 76/156 (48%), Gaps = 10/156 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + V+ PV+ + ++ I K+ +L+I++++ +G + + DC +S+ IS +LD Sbjct: 6 EQLQDVLAPVVVALGYQCWGIDFSSQGKHSVLRIYIDK-EGGVLVDDCAIVSRQISGVLD 64 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I Y LEVSSPG++RP+ F + G V ++ ++ G + G Sbjct: 65 VEDPISTEYTLEVSSPGMERPLFTIEQFASYAGEQVKIKLRSPFEGRRNFQGLLRGV--- 121 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 +E+ + + + + D + A +I T + Sbjct: 122 -----EEQDVVVQVEDHEFLLPIDMIDKANIIPTFD 152 >gi|157320498|gb|ABV39595.1| protein of unknown function DUF150 [Serratia proteamaculans 568] Length = 140 Score = 127 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 9/147 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 ++ +E + F V I + + L+I+++ + + + DC ++S +S +LDVE I Sbjct: 1 MLSAPVEALGFELVGIEFIRARQSTLRIYIDS-ENGINVDDCADVSHQVSAVLDVEEPIT 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LEVSSPG+DRPM + R+ G V+ + ++ +++K G I + Sbjct: 60 VAYNLEVSSPGLDRPMFTAEHYTRFLGDEVSLVLRMAVQNRRKWQGIIKSVDGEMITVAV 119 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 E + E + ++ A L+ Sbjct: 120 EGKDEV--------FALSNIQKANLVP 138 >gi|258545584|ref|ZP_05705818.1| BCR/YhbC family protein [Cardiobacterium hominis ATCC 15826] gi|258519284|gb|EEV88143.1| BCR/YhbC family protein [Cardiobacterium hominis ATCC 15826] Length = 157 Score = 127 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 47/157 (29%), Positives = 85/157 (54%), Gaps = 3/157 (1%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 M ++ +++PV+E M F V + N +L+I+V+R +G + + E+++A++ Sbjct: 1 MSREERVTELLKPVVESMGFEWVGVEYHHNSVNAILRIYVDRPEGGIDMEGVVEVTEAVN 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 PILDVE+ I Y LEVSSPG+DRP+ +DF+R+ G + G +++ G I Sbjct: 61 PILDVEDPINAPYTLEVSSPGLDRPLFSFADFVRFTGETAKVHLHAPVGKRRRFEGVIES 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 T ET + R + + + + + ++ ARL+ Sbjct: 121 TDETAQRITFAVRQGRAVEA--VEVDYANVDKARLVP 155 >gi|300721536|ref|YP_003710811.1| hypothetical protein XNC1_0503 [Xenorhabdus nematophila ATCC 19061] gi|297628028|emb|CBJ88577.1| conserved hypothetical protein [Xenorhabdus nematophila ATCC 19061] Length = 140 Score = 127 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 72/147 (48%), Gaps = 9/147 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I +E + F V + + + L+++++ ++ +T+ +C ++S +S +LDVE+ I Sbjct: 1 MISAPVEALGFELVGLEFIRARVSTLRVYIDSEE-GITVDNCADVSHQVSAVLDVEDPIS 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LE+SSPG++RP+ + R+ G V + ++ ++++ G I + Sbjct: 60 VLYNLEISSPGLERPLFTAEHYQRFIGEEVNVVLRMAMQNRRRWQGIIKAVDGEMITVTV 119 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 + + E + ++ A L+ Sbjct: 120 DGKDEV--------FALSNIQKANLVP 138 >gi|296132884|ref|YP_003640131.1| protein of unknown function DUF150 [Thermincola sp. JR] gi|296031462|gb|ADG82230.1| protein of unknown function DUF150 [Thermincola potens JR] Length = 153 Score = 127 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 76/158 (48%), Gaps = 10/158 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 + ++ + P++E V + ++ + L++F+++ ++L DC+ ++Q Sbjct: 1 MAKSKIEDLVTELAVPIVENAGMELVDVEYVKEGAHWYLRVFIDKP-QGVSLDDCQMIAQ 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 + P+LD ++ I Y LEVSSPG+DRP+ + +DF R+ G V K++ IG+ Sbjct: 60 RLDPLLDEKDPIPHEYMLEVSSPGLDRPLKKPADFARYAGRKVKVSTYAPIDGKKEFIGE 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + G + + + A+ D + S RL Sbjct: 120 LKGLIDNEVVIGICGTDK--------ALPLDKVSSVRL 149 >gi|239946886|ref|ZP_04698639.1| UPF0090 protein [Rickettsia endosymbiont of Ixodes scapularis] gi|239921162|gb|EER21186.1| UPF0090 protein [Rickettsia endosymbiont of Ixodes scapularis] Length = 166 Score = 127 bits (319), Expect = 9e-28, Method: Composition-based stats. Identities = 47/164 (28%), Positives = 91/164 (55%), Gaps = 9/164 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-MTLRDCEELSQAISPI 79 + I++VI+ + +M F V + +++I ++ +G +++ DC + S+ IS I Sbjct: 4 IEQQITNVIEESLTDMGFELVLVKFKGVNPKVVEILIDSLNGEKISVEDCTKASRTISAI 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE++IE Y LEVSS G++RP+V+ ++ R++G V ++ K + GKI+ Sbjct: 64 LDVEDLIEDTYSLEVSSSGLERPLVKFENYNRFSGREVKIKLKELLNGKTRYQGKIIKAE 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 +L+ E E ++ I +D + +A L++T+E+ + L Sbjct: 124 NNKIYLKCE--------EQEVLIDYDLIKNANLVLTEEVFKKLL 159 >gi|308173622|ref|YP_003920327.1| RNA-binding protein [Bacillus amyloliquefaciens DSM 7] gi|307606486|emb|CBI42857.1| putative RNA-binding protein [Bacillus amyloliquefaciens DSM 7] gi|328553446|gb|AEB23938.1| ribosome maturation protein RimP [Bacillus amyloliquefaciens TA208] gi|328911763|gb|AEB63359.1| putative RNA-binding protein [Bacillus amyloliquefaciens LL3] Length = 156 Score = 127 bits (319), Expect = 9e-28, Method: Composition-based stats. Identities = 41/160 (25%), Positives = 80/160 (50%), Gaps = 6/160 (3%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQA 75 + + + QP+++++ V I ++E N L++F++ D + + +C ++S+A Sbjct: 1 MSKKVTDTVQEMAQPILDDLQLELVDIEFVKEGQNWFLRVFIDS-DNGVDIEECAKVSEA 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LD + I +Y LEVSSPG +RP+ +K+DF + G V + + GK+ Sbjct: 60 LSEKLDEADPITQNYFLEVSSPGAERPLKKKADFEKSLGKNVYMKTYEPIDGLKVFEGKL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +E + K ++ I ++ + +ARL VT Sbjct: 120 AEFDGQTATIEMTIKTRKK----RVNIPYEKIANARLAVT 155 >gi|52785643|ref|YP_091472.1| hypothetical protein BLi01884 [Bacillus licheniformis ATCC 14580] gi|52348145|gb|AAU40779.1| YlxS [Bacillus licheniformis ATCC 14580] Length = 166 Score = 127 bits (319), Expect = 9e-28, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 80/163 (49%), Gaps = 6/163 (3%) Query: 13 PRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEE 71 R + +S ++QP+++ + V I ++E + L++F++ DD + + +C + Sbjct: 6 RRKSMSNKVIDTVSEMVQPILDNLQLELVDIEFVKEGQSWFLRVFIDSDD-GVDIEECAK 64 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+A+S LD + I+ +Y LEVSSPG +RP+ +++DF++ G V + ++ Sbjct: 65 VSEALSEKLDEADPIKQNYFLEVSSPGAERPLKKEADFMKALGKNVYIKTYEPIEGNKEF 124 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G++ + I I +D + ARL V Sbjct: 125 EGELSAFDGENVEVTV----MIKTRRKTINIPYDKVAKARLAV 163 >gi|16078722|ref|NP_389541.1| hypothetical protein BSU16590 [Bacillus subtilis subsp. subtilis str. 168] gi|221309537|ref|ZP_03591384.1| hypothetical protein Bsubs1_09141 [Bacillus subtilis subsp. subtilis str. 168] gi|221313861|ref|ZP_03595666.1| hypothetical protein BsubsN3_09072 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318784|ref|ZP_03600078.1| hypothetical protein BsubsJ_09001 [Bacillus subtilis subsp. subtilis str. JH642] gi|221323056|ref|ZP_03604350.1| hypothetical protein BsubsS_09112 [Bacillus subtilis subsp. subtilis str. SMY] gi|321315426|ref|YP_004207713.1| ribosome maturation protein RimP [Bacillus subtilis BSn5] gi|418459|sp|P32726|RIMP_BACSU RecName: Full=Ribosome maturation factor rimP; AltName: Full=P15A gi|49315|emb|CAA79230.1| ORF1 [Bacillus subtilis subsp. subtilis str. 168] gi|2634031|emb|CAB13532.1| putative RNA-binding protein [Bacillus subtilis subsp. subtilis str. 168] gi|291484214|dbj|BAI85289.1| hypothetical protein BSNT_02698 [Bacillus subtilis subsp. natto BEST195] gi|320021700|gb|ADV96686.1| ribosome maturation protein RimP [Bacillus subtilis BSn5] Length = 156 Score = 127 bits (319), Expect = 9e-28, Method: Composition-based stats. Identities = 41/160 (25%), Positives = 80/160 (50%), Gaps = 6/160 (3%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQA 75 + + + QP+++ + V I ++E + L++F++ DD + + +C ++S+A Sbjct: 1 MSKKVTDTVQEMAQPIVDSLQLELVDIEFVKEGQSWFLRVFIDSDD-GVDIEECAKVSEA 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LD + I +Y LEVSSPG +RP+ +K+DF + G V + + G++ Sbjct: 60 LSEKLDEADPISQNYFLEVSSPGAERPLKKKADFEKSLGKNVYIKTYEPIDGVKVFEGEL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +E + K +I I ++ + +ARL VT Sbjct: 120 AEFDGQTVTVEITIKTRKK----RINIPYEKIANARLAVT 155 >gi|212639525|ref|YP_002316045.1| hypothetical protein Aflv_1699 [Anoxybacillus flavithermus WK1] gi|212561005|gb|ACJ34060.1| Uncharacterized conserved protein, YhbC family [Anoxybacillus flavithermus WK1] Length = 200 Score = 127 bits (319), Expect = 9e-28, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 6/157 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + + ++ P++ M V I ++ KN L++F++ + + C +S+ +S Sbjct: 46 KKVTHIVEELVTPIVTHMGLELVDIEYVKEGKNWFLRVFIDSP-TGIDIDQCGVVSEQLS 104 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + I +Y LEVSSPG +RP+ + DF R G V + +++ G + Sbjct: 105 EKLDEIDPIPHNYFLEVSSPGAERPLKKARDFERAVGKNVYVKTYEPIDGQKEFEGLLTA 164 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + + +K + ++ + SARL V Sbjct: 165 FDGQTVTVEVKVKTKKKTITI----PYEKVASARLAV 197 >gi|163782300|ref|ZP_02177298.1| hypothetical protein HG1285_05920 [Hydrogenivirga sp. 128-5-R1-1] gi|159882333|gb|EDP75839.1| hypothetical protein HG1285_05920 [Hydrogenivirga sp. 128-5-R1-1] Length = 157 Score = 127 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 43/152 (28%), Positives = 82/152 (53%), Gaps = 7/152 (4%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++ I +++P+I+ M +R + E+ +L++ +++ G +T+RDCEE+S+ IS +L Sbjct: 8 ISRRIKELVEPLIKGMGYRLFDVEFKPERGWVLRVIIDKP-GGVTIRDCEEVSKKISGLL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+II Y LE+SSPG+ R + + + + G +V + K++ G + E Sbjct: 67 DVEDIIPFSYMLEISSPGLTRELEKPEHYDFFKGRLVKVVLREPVSGKREATGYVESVRE 126 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 L + ++GE + I F ++ RL Sbjct: 127 GIITLREREKGEA------LHIPFSAIAKGRL 152 >gi|118602110|ref|YP_903325.1| hypothetical protein Rmag_0052 [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|166919103|sp|A1AV97|RIMP_RUTMC RecName: Full=Ribosome maturation factor rimP gi|118567049|gb|ABL01854.1| protein of unknown function DUF150 [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 154 Score = 127 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 7/156 (4%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I+ +I+ VI++M + V I + K+ +L++F++ D + + DCE++S+ +S I Sbjct: 4 VTDKITHLIELVIKDMCYELVGIEYVASGKHSILRVFIDTDKKGVGVNDCEKVSRQLSSI 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 DVE I G Y LEVSSPGI+RP+ K + R+ G V +V ++ G I + Sbjct: 64 FDVEEPISGQYTLEVSSPGIERPLFHKEHYQRFLGANVKLRMVRPIDGRRNFFGVIGCVN 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 E + E + + D + A L+V Sbjct: 124 ------EADNTFELVGELDLVILDIDLIEKANLVVD 153 >gi|220934177|ref|YP_002513076.1| protein of unknown function DUF150 [Thioalkalivibrio sp. HL-EbGR7] gi|259645128|sp|B8GP00|RIMP_THISH RecName: Full=Ribosome maturation factor rimP gi|219995487|gb|ACL72089.1| protein of unknown function DUF150 [Thioalkalivibrio sp. HL-EbGR7] Length = 154 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 38/150 (25%), Positives = 77/150 (51%), Gaps = 10/150 (6%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDV 82 + ++++P++ M ++ + K+ LL++F++ + +TL DC E+S+ +S ++DV Sbjct: 2 QLKALLEPLVTRMGYQLWGMEFRVAKHSALLRLFIDS-EQGITLDDCTEVSRQVSALMDV 60 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ I+ Y LEVSSPG+DRP+ + R+ G V ++ G I+ E Sbjct: 61 EDPIQVPYTLEVSSPGVDRPLFEAGQYARYVGEQVRVRTQWPIDGQRNFAGAIVSADEDS 120 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARL 172 L+ + R ++ + +++ RL Sbjct: 121 VTLDVDGR--------EVRLPLEAIARGRL 142 >gi|67459265|ref|YP_246889.1| hypothetical protein RF_0873 [Rickettsia felis URRWXCal2] gi|75536303|sp|Q4UL49|RIMP_RICFE RecName: Full=Ribosome maturation factor rimP gi|67004798|gb|AAY61724.1| Uncharacterized protein [Rickettsia felis URRWXCal2] Length = 161 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 90/166 (54%), Gaps = 9/166 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-MTLRDCEELSQAISPI 79 + I++VI+ + +M F V + +++I ++ +G +++ DC + S+ IS I Sbjct: 4 IEQQITNVIEESLTDMGFELVLVKFKGVNPKVVEILIDSLNGEKISVEDCTKASRTISAI 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE++IE Y LEV+S G++RP+V+ ++ R+ G V ++ K + GKI+ Sbjct: 64 LDVEDLIEDAYSLEVASSGLERPLVKFENYNRFLGREVKIKLKELLNGKTRYQGKIIKAK 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 +L+ E E ++ I +D + +A L++T+E+ + L Sbjct: 124 NNKIYLKCE--------EQEVLIDYDLIKNANLVLTEEVFKKLLKQ 161 >gi|146329510|ref|YP_001208969.1| hypothetical protein DNO_0031 [Dichelobacter nodosus VCS1703A] gi|166919100|sp|A5EWZ1|RIMP_DICNV RecName: Full=Ribosome maturation factor rimP gi|146232980|gb|ABQ13958.1| conserved hypothetical protein [Dichelobacter nodosus VCS1703A] Length = 155 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 5/157 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M ++ +++P++E M F + N +L+I+V+ +G + + D +++ ++ Sbjct: 1 MSQEQVVTELLRPIVESMGFIWWGLEYHYNSMNSILRIYVDTQEGGIGIDDIVTITEQLN 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 PILDVE I +Y LEVSSPG+DR + + ++ G V C + K+K G + Sbjct: 61 PILDVEQPITTNYTLEVSSPGLDRILFTLAQCEQFIGATVHCRLRFPFEGKRKFQGIMTA 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + ++ + F + AR++ Sbjct: 121 VDHDKETISLTLAD----GAAEVHLPFTQIDKARIVP 153 >gi|307293341|ref|ZP_07573187.1| protein of unknown function DUF150 [Sphingobium chlorophenolicum L-1] gi|306881407|gb|EFN12623.1| protein of unknown function DUF150 [Sphingobium chlorophenolicum L-1] Length = 174 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 55/167 (32%), Positives = 86/167 (51%), Gaps = 9/167 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDD-GNMTLRDCEELSQAI 76 M +++++I+P ++ + F V+I L + LQI ER + + + DC +S+ + Sbjct: 1 MADIAELTALIEPEVKALGFDLVRIKLFGSGDEYTLQIMAERPETKQLVIEDCATISRRL 60 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 S +LD + IE YRLEVSSPGIDRP+ R +DFL W GH + ++ G + Sbjct: 61 SDVLDEADPIEEAYRLEVSSPGIDRPLTRLTDFLEWTGHEAKIAATETVSGRKSFRGVLN 120 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 G K G +AI F + A+LI+TD L+ AS+ Sbjct: 121 GIEGEDILFTDAKAG-------DVAIPFALVGDAKLILTDALIAASM 160 >gi|317129166|ref|YP_004095448.1| hypothetical protein Bcell_2460 [Bacillus cellulosilyticus DSM 2522] gi|315474114|gb|ADU30717.1| protein of unknown function DUF150 [Bacillus cellulosilyticus DSM 2522] Length = 154 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 79/156 (50%), Gaps = 6/156 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M + ++ +++P++++MS V I + KN L+++++R DG + L DC +S+ +S Sbjct: 1 MSIREEVEVLVEPILQQMSLELVDIEYKKEGKNWFLRVYIDR-DGGVDLDDCTAVSEQLS 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + I+ Y LEVSSPG +RP+ + D +R G + ++ GK+M Sbjct: 60 EALDKHDPIDQMYYLEVSSPGAERPLKTEQDIVRAVGKYINVTTYAPIDGEKVFEGKLMH 119 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 ++ +E + + + +D + ARL Sbjct: 120 FNDGILSME----TKVKTRVKTVELPYDKIAKARLA 151 >gi|296330874|ref|ZP_06873349.1| hypothetical protein BSU6633_07236 [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674392|ref|YP_003866064.1| hypothetical protein BSUW23_08545 [Bacillus subtilis subsp. spizizenii str. W23] gi|296151879|gb|EFG92753.1| hypothetical protein BSU6633_07236 [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412636|gb|ADM37755.1| conserved hypothetical protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 156 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 41/160 (25%), Positives = 80/160 (50%), Gaps = 6/160 (3%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQA 75 + + + QP+++ + V I ++E + L++F++ DD + + +C ++S+A Sbjct: 1 MSKKVTDTVQEMAQPIVDSLQLELVDIEFVKEGQSWFLRVFIDSDD-GVDIEECAKVSEA 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LD + I +Y LEVSSPG +RP+ +K+DF + G V + + G++ Sbjct: 60 LSEKLDEADPISQNYFLEVSSPGAERPLKKKADFEKSLGKNVYIKTYEPIEGVKVFEGEL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +E + K +I I ++ + +ARL VT Sbjct: 120 AEFDGQTVTVEITIKTRKK----RINIPYEKIANARLAVT 155 >gi|330877235|gb|EGH11384.1| ribosome maturation protein RimP [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 152 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 76/156 (48%), Gaps = 10/156 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + ++ PV+ + ++ I K+ +L+I++++ +G + + DC +S+ IS +LD Sbjct: 6 EQLQGLLAPVVVALGYQCWGIDFSSQGKHSVLRIYIDK-EGGVLVDDCAIVSRQISGVLD 64 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I Y LEVSSPG++RP+ F + G V ++ ++ G + G Sbjct: 65 VEDPISTEYTLEVSSPGMERPLFTIEQFASYAGEQVRIKLRSPFEGRRNFQGLLRGV--- 121 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 +E+ + + + + D + A +I T + Sbjct: 122 -----EEQDVVVQVEDHEFLLPIDLIDKANIIPTFD 152 >gi|126175441|ref|YP_001051590.1| hypothetical protein Sbal_3241 [Shewanella baltica OS155] gi|153001791|ref|YP_001367472.1| hypothetical protein Shew185_3282 [Shewanella baltica OS185] gi|160876525|ref|YP_001555841.1| hypothetical protein Sbal195_3419 [Shewanella baltica OS195] gi|217972313|ref|YP_002357064.1| hypothetical protein Sbal223_1126 [Shewanella baltica OS223] gi|304410267|ref|ZP_07391886.1| protein of unknown function DUF150 [Shewanella baltica OS183] gi|307302022|ref|ZP_07581780.1| protein of unknown function DUF150 [Shewanella baltica BA175] gi|166990740|sp|A3D7K8|RIMP_SHEB5 RecName: Full=Ribosome maturation factor rimP gi|166990756|sp|A6WRH0|RIMP_SHEB8 RecName: Full=Ribosome maturation factor rimP gi|189040141|sp|A9KZX3|RIMP_SHEB9 RecName: Full=Ribosome maturation factor rimP gi|254799945|sp|B8E6N0|RIMP_SHEB2 RecName: Full=Ribosome maturation factor rimP gi|125998646|gb|ABN62721.1| protein of unknown function DUF150 [Shewanella baltica OS155] gi|151366409|gb|ABS09409.1| protein of unknown function DUF150 [Shewanella baltica OS185] gi|160862047|gb|ABX50581.1| protein of unknown function DUF150 [Shewanella baltica OS195] gi|217497448|gb|ACK45641.1| protein of unknown function DUF150 [Shewanella baltica OS223] gi|304351676|gb|EFM16075.1| protein of unknown function DUF150 [Shewanella baltica OS183] gi|306914060|gb|EFN44481.1| protein of unknown function DUF150 [Shewanella baltica BA175] gi|315268719|gb|ADT95572.1| protein of unknown function DUF150 [Shewanella baltica OS678] Length = 151 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 73/154 (47%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ +++ +E + F+ I + K+ L++F++ + + + DC S+ +S + Sbjct: 4 LEFRLAEMLKVPVEALGFQLWGIEYVQAGKHSTLRVFIDG-ENGINIEDCANASRQVSAV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ + + G V ++ + + L G I Sbjct: 63 LDVEDPISTEYTLEVSSPGVDRPLFTAEQYAGYVGEDVKLQLTMPVDGSRNLKGAITAVD 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L+ + ++ ++ D++ LI Sbjct: 123 GQMLSLKVNGK--------ELVVALDNIRKGNLI 148 >gi|152978791|ref|YP_001344420.1| hypothetical protein Asuc_1119 [Actinobacillus succinogenes 130Z] gi|171704316|sp|A6VND8|RIMP_ACTSZ RecName: Full=Ribosome maturation factor rimP gi|150840514|gb|ABR74485.1| protein of unknown function DUF150 [Actinobacillus succinogenes 130Z] Length = 151 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 77/155 (49%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ ++Q +E++ I + +++F+++ +G +++ DC ++S+ +S I Sbjct: 4 LEQNLQEMLQGSVEDLGCELWGIECQRAGRFMTVRLFIDK-EGGVSVDDCADVSRQVSAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ S + R+ G + + + D++K GK+ Sbjct: 63 LDVEDPITDKYNLEVSSPGLDRPLFTLSQYERFIGEDITIHLRIPVSDRRKWQGKLEKIE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L + + + F ++ A +I Sbjct: 123 NDTVTLTVDGQPQV--------FVFGNIQKANIIP 149 >gi|302381339|ref|YP_003817162.1| hypothetical protein Bresu_0224 [Brevundimonas subvibrioides ATCC 15264] gi|302191967|gb|ADK99538.1| protein of unknown function DUF150 [Brevundimonas subvibrioides ATCC 15264] Length = 232 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 10/180 (5%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERD-DGNMTLRDCEEL 72 + +I +I PV + + V++ L+ LQ+ ER D ++ + +C L Sbjct: 36 LRAKTVEDREILELIDPVADSIGLSIVRVRLMGGTLRRRLQVMAERPSDNDIDVGECARL 95 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+A+S +LD + I G Y LEVSSPGIDRP+ R DF + G E +++ Sbjct: 96 SRAMSEVLDAADPIAGEYLLEVSSPGIDRPLTRLKDFDLFEGLEARLESDRMIEGRKRFK 155 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR--ASLNNYGSYA 190 G + GT ++ + + I FD L+ A+L++ D LL+ A++ Sbjct: 156 GILAGTDGDNIAIDLDG------EDDTALIPFDWLVDAKLVMNDALLKRGAAIRAARGEP 209 >gi|87119793|ref|ZP_01075690.1| hypothetical protein MED121_07630 [Marinomonas sp. MED121] gi|86165269|gb|EAQ66537.1| hypothetical protein MED121_07630 [Marinomonas sp. MED121] Length = 153 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 40/152 (26%), Positives = 78/152 (51%), Gaps = 10/152 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERD-DGNMTLRDCEELSQAISPILDV 82 + I+PV+E + +R + + K+ +L++F+E D + + DC ++S+ +S ILDV Sbjct: 8 LEGHIRPVVEGLGYRFWGLEYISQGKDSVLRVFIESDSENGTDIEDCAKVSRQVSSILDV 67 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ I G Y LEVSSPG+DRP+ + F + G +V+ + + ++K G++ Sbjct: 68 EDPITGEYNLEVSSPGLDRPLFELAQFEEYIGAIVSLRLRVPFDGRRKFKGQLTAVEGED 127 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L ++ + + D + A ++ Sbjct: 128 VVLRVDQE--------EYLLPIDLIDKANVVP 151 >gi|56551453|ref|YP_162292.1| hypothetical protein ZMO0557 [Zymomonas mobilis subsp. mobilis ZM4] gi|241761100|ref|ZP_04759189.1| protein of unknown function DUF150 [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752934|ref|YP_003225827.1| hypothetical protein Za10_0696 [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|81355359|sp|Q5NQ24|RIMP_ZYMMO RecName: Full=Ribosome maturation factor rimP gi|56543027|gb|AAV89181.1| protein of unknown function DUF150 [Zymomonas mobilis subsp. mobilis ZM4] gi|241374719|gb|EER64180.1| protein of unknown function DUF150 [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552297|gb|ACV75243.1| protein of unknown function DUF150 [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 184 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 51/161 (31%), Positives = 90/161 (55%), Gaps = 10/161 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDD-GNMTLRDCEELSQAISPILDV 82 I+++++P ++ + V+I++ K+ LQI ER D + L +CE LS+ +S I D Sbjct: 16 ITALVEPEVKALGLELVRIAMFGGKSDPTLQIMAERPDTRQIGLTECEALSRRLSEIFDE 75 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE-T 141 ++ IE YRLEVSSPGIDRP+ R+ D+ W G + +++ G+I+G + Sbjct: 76 QDPIEDAYRLEVSSPGIDRPLTRRKDYQDWKGFSARIRLSAPLDGRKQFDGEIIGIDDAD 135 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS 182 L+ K G+K + F ++ ++L++TD L+ A+ Sbjct: 136 NVILDCPKVGQKI-------LPFSAIERSKLLLTDALIAAT 169 >gi|30263820|ref|NP_846197.1| hypothetical protein BA_3954 [Bacillus anthracis str. Ames] gi|42782905|ref|NP_980152.1| hypothetical protein BCE_3855 [Bacillus cereus ATCC 10987] gi|47529244|ref|YP_020593.1| hypothetical protein GBAA_3954 [Bacillus anthracis str. 'Ames Ancestor'] gi|47569094|ref|ZP_00239783.1| YlxS-like protein [Bacillus cereus G9241] gi|49186667|ref|YP_029919.1| hypothetical protein BAS3668 [Bacillus anthracis str. Sterne] gi|49478391|ref|YP_037878.1| hypothetical protein BT9727_3558 [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141671|ref|YP_085158.1| hypothetical protein BCZK3576 [Bacillus cereus E33L] gi|165872607|ref|ZP_02217238.1| conserved hypothetical protein [Bacillus anthracis str. A0488] gi|167635806|ref|ZP_02394115.1| conserved hypothetical protein [Bacillus anthracis str. A0442] gi|167639838|ref|ZP_02398107.1| conserved hypothetical protein [Bacillus anthracis str. A0193] gi|170687819|ref|ZP_02879033.1| conserved hypothetical protein [Bacillus anthracis str. A0465] gi|170706785|ref|ZP_02897243.1| conserved hypothetical protein [Bacillus anthracis str. A0389] gi|177652089|ref|ZP_02934635.1| conserved hypothetical protein [Bacillus anthracis str. A0174] gi|190568460|ref|ZP_03021367.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I] gi|196036915|ref|ZP_03104299.1| conserved hypothetical protein [Bacillus cereus W] gi|196042165|ref|ZP_03109448.1| conserved hypothetical protein [Bacillus cereus NVH0597-99] gi|196044678|ref|ZP_03111913.1| conserved hypothetical protein [Bacillus cereus 03BB108] gi|206978439|ref|ZP_03239306.1| conserved hypothetical protein [Bacillus cereus H3081.97] gi|217961237|ref|YP_002339805.1| hypothetical protein BCAH187_A3864 [Bacillus cereus AH187] gi|218904945|ref|YP_002452779.1| hypothetical protein BCAH820_3829 [Bacillus cereus AH820] gi|222097261|ref|YP_002531318.1| hypothetical protein BCQ_3601 [Bacillus cereus Q1] gi|225865796|ref|YP_002751174.1| hypothetical protein BCA_3913 [Bacillus cereus 03BB102] gi|227813275|ref|YP_002813284.1| hypothetical protein BAMEG_0677 [Bacillus anthracis str. CDC 684] gi|229603147|ref|YP_002868055.1| hypothetical protein BAA_3978 [Bacillus anthracis str. A0248] gi|254683476|ref|ZP_05147336.1| hypothetical protein BantC_06445 [Bacillus anthracis str. CNEVA-9066] gi|254735855|ref|ZP_05193561.1| hypothetical protein BantWNA_11921 [Bacillus anthracis str. Western North America USA6153] gi|254739619|ref|ZP_05197313.1| hypothetical protein BantKB_01112 [Bacillus anthracis str. Kruger B] gi|254756008|ref|ZP_05208039.1| hypothetical protein BantV_26379 [Bacillus anthracis str. Vollum] gi|254759331|ref|ZP_05211356.1| hypothetical protein BantA9_13571 [Bacillus anthracis str. Australia 94] gi|301055307|ref|YP_003793518.1| nus operon associated protein [Bacillus anthracis CI] gi|34222814|sp|Q81WL9|RIMP_BACAN RecName: Full=Ribosome maturation factor rimP gi|51316695|sp|Q732Q5|RIMP_BACC1 RecName: Full=Ribosome maturation factor rimP gi|81395111|sp|Q6HEZ8|RIMP_BACHK RecName: Full=Ribosome maturation factor rimP gi|81686585|sp|Q636K9|RIMP_BACCZ RecName: Full=Ribosome maturation factor rimP gi|226706060|sp|B7JJ95|RIMP_BACC0 RecName: Full=Ribosome maturation factor rimP gi|226706064|sp|B7HLF0|RIMP_BACC7 RecName: Full=Ribosome maturation factor rimP gi|254765081|sp|B9IVA5|RIMP_BACCQ RecName: Full=Ribosome maturation factor rimP gi|254803820|sp|C1EP39|RIMP_BACC3 RecName: Full=Ribosome maturation factor rimP gi|254803830|sp|C3P5L9|RIMP_BACAA RecName: Full=Ribosome maturation factor rimP gi|254806572|sp|C3L7B0|RIMP_BACAC RecName: Full=Ribosome maturation factor rimP gi|259585701|sp|A0RHI8|RIMP_BACAH RecName: Full=Ribosome maturation factor rimP gi|30258464|gb|AAP27683.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gi|42738832|gb|AAS42760.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gi|47504392|gb|AAT33068.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames Ancestor'] gi|47554256|gb|EAL12618.1| YlxS-like protein [Bacillus cereus G9241] gi|49180594|gb|AAT55970.1| conserved hypothetical protein [Bacillus anthracis str. Sterne] gi|49329947|gb|AAT60593.1| conserved hypothetical protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51975140|gb|AAU16690.1| conserved hypothetical protein [Bacillus cereus E33L] gi|164711639|gb|EDR17185.1| conserved hypothetical protein [Bacillus anthracis str. A0488] gi|167512239|gb|EDR87616.1| conserved hypothetical protein [Bacillus anthracis str. A0193] gi|167528763|gb|EDR91521.1| conserved hypothetical protein [Bacillus anthracis str. A0442] gi|170128203|gb|EDS97072.1| conserved hypothetical protein [Bacillus anthracis str. A0389] gi|170668135|gb|EDT18884.1| conserved hypothetical protein [Bacillus anthracis str. A0465] gi|172082458|gb|EDT67523.1| conserved hypothetical protein [Bacillus anthracis str. A0174] gi|190560464|gb|EDV14442.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I] gi|195990470|gb|EDX54454.1| conserved hypothetical protein [Bacillus cereus W] gi|196024713|gb|EDX63385.1| conserved hypothetical protein [Bacillus cereus 03BB108] gi|196027017|gb|EDX65641.1| conserved hypothetical protein [Bacillus cereus NVH0597-99] gi|206743354|gb|EDZ54794.1| conserved hypothetical protein [Bacillus cereus H3081.97] gi|217067014|gb|ACJ81264.1| conserved hypothetical protein [Bacillus cereus AH187] gi|218536944|gb|ACK89342.1| conserved hypothetical protein [Bacillus cereus AH820] gi|221241319|gb|ACM14029.1| conserved hypothetical protein [Bacillus cereus Q1] gi|225790678|gb|ACO30895.1| conserved hypothetical protein [Bacillus cereus 03BB102] gi|227005285|gb|ACP15028.1| conserved hypothetical protein [Bacillus anthracis str. CDC 684] gi|229267555|gb|ACQ49192.1| conserved hypothetical protein [Bacillus anthracis str. A0248] gi|300377476|gb|ADK06380.1| protein associated with nus operon [Bacillus cereus biovar anthracis str. CI] gi|324327711|gb|ADY22971.1| ribosome maturation protein RimP [Bacillus thuringiensis serovar finitimus YBT-020] Length = 156 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 43/160 (26%), Positives = 81/160 (50%), Gaps = 6/160 (3%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQA 75 D + + + QP++EE++ V + ++E + L++F++ + + + +C +S+ Sbjct: 1 MDKKVTEVVEAFAQPIVEELNLELVDVEYVKEGQDWFLRVFIDS-EKGVDIEECGAVSER 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ GK+ Sbjct: 60 LSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMFEGKM 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + T L + K +I I D + +ARL VT Sbjct: 120 LSYDGTTITLLLTIKTRKK----EIQIPMDKVANARLAVT 155 >gi|226946309|ref|YP_002801382.1| hypothetical protein Avin_42840 [Azotobacter vinelandii DJ] gi|259585700|sp|C1DFL1|RIMP_AZOVD RecName: Full=Ribosome maturation factor rimP gi|226721236|gb|ACO80407.1| Conserved hypothetical protein [Azotobacter vinelandii DJ] Length = 145 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 78/154 (50%), Gaps = 10/154 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + +++ PV+E + + I + ++ LL+++++ D + + DCE++S+ IS +LDVE Sbjct: 1 MQALLAPVVEALGYECWGIEFLSQGRHSLLRVYIDHAD-GILIDDCEKVSRQISGVLDVE 59 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I Y LEVSSPG+DRP+ F+R G V + ++ G + G Sbjct: 60 DPISSEYTLEVSSPGMDRPLFTLEQFVRCAGEQVKIRLRSPFEGRRNFQGLLRG------ 113 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 +++ +++ + + D + A +I + Sbjct: 114 --VEDQDVVVLVDDHEYLLPIDLIDKANIIPRFD 145 >gi|288556946|ref|YP_003428881.1| hypothetical protein BpOF4_19750 [Bacillus pseudofirmus OF4] gi|288548106|gb|ADC51989.1| hypothetical protein BpOF4_19750 [Bacillus pseudofirmus OF4] Length = 156 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 71/158 (44%), Gaps = 6/158 (3%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQA 75 + ++ ++ P+++E++ V + +E L++F++ D + L DC ++S+ Sbjct: 1 MSKKVTDIVAELVTPLLDELNLELVDVEFKKEGPNWFLRVFIDS-DTGVDLEDCGKVSEQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LD + I Y LEVSSPG +RP+ + D + G V ++ G + Sbjct: 60 LSEKLDEMDPIPQAYFLEVSSPGAERPLKKVKDLEKAVGKNVHVTTYEPVDGEKAFEGML 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 +E + + K I +D + +ARL Sbjct: 120 QSFDGEVLTIEVKIKTRKKS----YEIPYDKVANARLA 153 >gi|308050586|ref|YP_003914152.1| hypothetical protein Fbal_2876 [Ferrimonas balearica DSM 9799] gi|307632776|gb|ADN77078.1| protein of unknown function DUF150 [Ferrimonas balearica DSM 9799] Length = 151 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 73/154 (47%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + ++ ++ +E + + I + + L++F+E + +T+ DC +S+ + + Sbjct: 4 MEQRLTEMLSEPVEALGYELWGIQYVRAGNHSTLRLFIEH-ENGITVDDCAAVSRQVGAV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ + R+ G + + K+K G+I+ Sbjct: 63 LDVEDPITTEYNLEVSSPGLDRPLFTAEHYQRYMGSEAVVVLNMPMEGKRKWQGEIVAVE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L ++ + +A+ ++ A +I Sbjct: 123 GDMVTLRHNEK------DQVVALP--NVQKAHVI 148 >gi|154706898|ref|YP_001423971.1| hypothetical protein CBUD_0561 [Coxiella burnetii Dugway 5J108-111] gi|189040247|sp|A9KBL9|RIMP_COXBN RecName: Full=Ribosome maturation factor rimP gi|154356184|gb|ABS77646.1| hypothetical cytosolic protein [Coxiella burnetii Dugway 5J108-111] Length = 153 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 42/161 (26%), Positives = 75/161 (46%), Gaps = 11/161 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M A + +I P +E + F V +LQ+FV++ G + L +C ++S+ IS Sbjct: 1 MSQARTLHRLIAPAVEALGFELVGCELFRRGATRILQVFVDKP-GGIGLDECAKVSRQIS 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I G Y LEVSSPG++RP+ + + R+ G+ + +++ G I+ Sbjct: 60 AVLDVEDPIRGRYTLEVSSPGLERPLYTANHYRRFIGNKAKIRLREPREGQRQFRGMIVA 119 Query: 138 TSETG-FFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 L+ + + + + + A LI E Sbjct: 120 VDNEEQVTLQLDNKI--------LKVPLGEIEKANLIADFE 152 >gi|170727896|ref|YP_001761922.1| hypothetical protein Swoo_3563 [Shewanella woodyi ATCC 51908] gi|226703865|sp|B1KRR2|RIMP_SHEWM RecName: Full=Ribosome maturation factor rimP gi|169813243|gb|ACA87827.1| protein of unknown function DUF150 [Shewanella woodyi ATCC 51908] Length = 151 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 72/154 (46%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + +++ +E + + + K+ +++++++ + + + DC E+S+ +S + Sbjct: 4 IENRLEEMLKSPVEALGHTLWGLEYIQAGKHSVVRVYIDN-EKGVFIEDCAEVSRQVSAV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ + + V ++ + + L G + G Sbjct: 63 LDVEDPISTEYTLEVSSPGVDRPLFNAEQYTAYIDETVKIQLTMPVAGSRNLKGTVTGVE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + ++ I+ D++ LI Sbjct: 123 GQMLTLTVDG--------NELIIALDNIRKGNLI 148 >gi|218898969|ref|YP_002447380.1| hypothetical protein BCG9842_B1329 [Bacillus cereus G9842] gi|226695927|sp|B7IUH5|RIMP_BACC2 RecName: Full=Ribosome maturation factor rimP gi|218540973|gb|ACK93367.1| conserved hypothetical protein [Bacillus cereus G9842] gi|326941583|gb|AEA17479.1| hypothetical protein CT43_CH3814 [Bacillus thuringiensis serovar chinensis CT-43] Length = 156 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 43/160 (26%), Positives = 81/160 (50%), Gaps = 6/160 (3%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQA 75 D + + + QP++EE++ V + ++E + L++F++ + + + +C +S+ Sbjct: 1 MDKKVTEVVEAFAQPIVEELNLELVDVEYVKEGQDWFLRVFIDS-EKGVDIEECGAVSER 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ GK+ Sbjct: 60 LSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMFEGKL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + T L + K +I I D + +ARL VT Sbjct: 120 LSYDGTTITLLLTIKTRKK----EIQIPMDKVANARLAVT 155 >gi|163752375|ref|ZP_02159570.1| hypothetical protein KT99_00518 [Shewanella benthica KT99] gi|161327747|gb|EDP98934.1| hypothetical protein KT99_00518 [Shewanella benthica KT99] Length = 151 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 73/154 (47%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + ++ +E + R + + K+ +L+++++ D + + DC E S+ IS + Sbjct: 4 IEKKLEEMLSSPVEALGHRLWGLEYIQAGKHSILRVYIDN-DNGIFIEDCAETSRQISAV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I + LEVSSPG+DRP+ + + V ++ + G + L G ++G Sbjct: 63 LDVEDPISTEFTLEVSSPGVDRPLFSAEQYGSYIDETVKIQLTMPVGGSRNLKGTVIGVE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + ++ I+ D++ LI Sbjct: 123 GQTLTLSVDG--------NELIIALDNIRRGNLI 148 >gi|259586222|sp|C3K261|RIMP_PSEFS RecName: Full=Ribosome maturation factor rimP Length = 158 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 78/156 (50%), Gaps = 10/156 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 ++ +++ PV+ + + I ++ +L++++++ +G + + DC +S+ IS +LD Sbjct: 12 EELQALLAPVVVALGYECWGIEFSAQGRHSMLRVYIDK-EGGVLVDDCAIVSRQISGVLD 70 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I Y LEVSSPG++RP+ F ++ G V ++ ++ G + G Sbjct: 71 VEDPISVEYTLEVSSPGMERPLFTIDQFAKFAGEQVKIKLRSPFEGRRNFQGLLRGV--- 127 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 +E+ + + + + D + A +I + + Sbjct: 128 -----EEQDVVVQVEDHEFLLPIDMIDKANIIPSFD 158 >gi|229019011|ref|ZP_04175853.1| hypothetical protein bcere0030_35250 [Bacillus cereus AH1273] gi|229025257|ref|ZP_04181677.1| hypothetical protein bcere0029_35590 [Bacillus cereus AH1272] gi|228736010|gb|EEL86585.1| hypothetical protein bcere0029_35590 [Bacillus cereus AH1272] gi|228742339|gb|EEL92497.1| hypothetical protein bcere0030_35250 [Bacillus cereus AH1273] Length = 156 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 43/160 (26%), Positives = 81/160 (50%), Gaps = 6/160 (3%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQA 75 D + + + QP++EE++ V + ++E + L++F++ + + + +C +S+ Sbjct: 1 MDKKVTEVVEAFAQPIVEELNLELVDVEYVQEGQDWFLRVFIDS-EKGVDIEECGAVSER 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ GK+ Sbjct: 60 LSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMFEGKL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + T L + K +I I D + +ARL VT Sbjct: 120 LSYDGTTITLLLTIKTRKK----EIQIPMDKVANARLAVT 155 >gi|28871626|ref|NP_794245.1| hypothetical protein PSPTO_4492 [Pseudomonas syringae pv. tomato str. DC3000] gi|213966649|ref|ZP_03394800.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] gi|301383159|ref|ZP_07231577.1| hypothetical protein PsyrptM_11007 [Pseudomonas syringae pv. tomato Max13] gi|302063406|ref|ZP_07254947.1| hypothetical protein PsyrptK_25769 [Pseudomonas syringae pv. tomato K40] gi|302133779|ref|ZP_07259769.1| hypothetical protein PsyrptN_20414 [Pseudomonas syringae pv. tomato NCPPB 1108] gi|34222830|sp|Q87WQ3|RIMP_PSESM RecName: Full=Ribosome maturation factor rimP gi|28854878|gb|AAO57940.1| conserved protein of unknown function [Pseudomonas syringae pv. tomato str. DC3000] gi|213928499|gb|EEB62043.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] Length = 158 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 76/156 (48%), Gaps = 10/156 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + ++ PV+ + ++ I K+ +L+I++++ +G + + DC +S+ IS +LD Sbjct: 12 EQLQGLLAPVVVALGYQCWGIDFSSQGKHSVLRIYIDK-EGGVLVDDCAIVSRQISGVLD 70 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I Y LEVSSPG++RP+ F + G V ++ ++ G + G Sbjct: 71 VEDPISTEYTLEVSSPGMERPLFTIEQFALYAGEQVRIKLRSPFEGRRNFQGLLRGV--- 127 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 +E+ + + + + D + A +I T + Sbjct: 128 -----EEQDVVVQVEDHEFLLPIDLIDKANIIPTFD 158 >gi|295687484|ref|YP_003591177.1| hypothetical protein Cseg_0027 [Caulobacter segnis ATCC 21756] gi|295429387|gb|ADG08559.1| protein of unknown function DUF150 [Caulobacter segnis ATCC 21756] Length = 196 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 50/181 (27%), Positives = 85/181 (46%), Gaps = 12/181 (6%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERD------DGNMTLR 67 + G D+ ++ PV E + + V++ L+ LQI E G+M + Sbjct: 1 MRGKTQEDRDLIEMLDPVAESLGYEIVRLRLMGGAEQRRLQIMAEHPLLEDGTGGDMNVE 60 Query: 68 DCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD 127 DC LS+ IS ILD + I G Y LEVSSPG+DRP+ R DF + G E+ + Sbjct: 61 DCARLSRGISEILDAADPIAGEYTLEVSSPGVDRPLTRLKDFEDYAGLEARIELDRVAEG 120 Query: 128 KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYG 187 +++ G++ G + L E +++ + F ++ A+L++TD L+ Sbjct: 121 RKRFKGELAGIEDDQVGLNIEGE-----DDVTVYFPFAWIIDAKLVMTDTLMDRGAKQRA 175 Query: 188 S 188 + Sbjct: 176 A 176 >gi|294500901|ref|YP_003564601.1| hypothetical protein BMQ_4155 [Bacillus megaterium QM B1551] gi|294350838|gb|ADE71167.1| conserved hypothetical protein [Bacillus megaterium QM B1551] Length = 156 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 72/158 (45%), Gaps = 6/158 (3%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQA 75 + + ++ P++EEM+ V+I ++ K+ L++F++ D + + DC +S+ Sbjct: 1 MSKNVKQTVEEMVSPILEEMNLELVEIEYVKEGKDWFLRVFIDS-DNGVDIEDCGAVSEK 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +D + I +Y LEVSSPG +RP+ + DF R G V + ++ G++ Sbjct: 60 LSEKMDAVDPIPHNYFLEVSSPGAERPLKKDKDFERAIGKHVYIKTYEPIEGAKEFEGEL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + + +D + ARL Sbjct: 120 QSFDGETVTLSI----RIKTRTKTVVLPYDKVAFARLA 153 >gi|117919477|ref|YP_868669.1| hypothetical protein Shewana3_1028 [Shewanella sp. ANA-3] gi|166919124|sp|A0KTZ4|RIMP_SHESA RecName: Full=Ribosome maturation factor rimP gi|117611809|gb|ABK47263.1| protein of unknown function DUF150 [Shewanella sp. ANA-3] Length = 151 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 74/154 (48%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ +++ +E + F+ I + K+ +L++F++ + + + DC +S+ +S + Sbjct: 4 LESRLADMLKVPVEALGFQLWGIEYVQAGKHSILRVFIDG-ENGINIEDCANVSRQVSAV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ + + G V ++ + + L G I Sbjct: 63 LDVEDPISTEYTLEVSSPGVDRPLFTAEQYAAYVGEDVKLQLTMPVAGSRNLKGAITQVD 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + ++ ++ D++ +I Sbjct: 123 GQMLSLNVNGK--------ELVVALDNIRKGNII 148 >gi|253573563|ref|ZP_04850906.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251847091|gb|EES75096.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 153 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 10/159 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ P +EE F V + ++ N L++FV++ +G + + DC +S+ Sbjct: 1 MSTPKIKATVEQMVTPYLEENGFELVDVEYVKEGSNWFLRVFVDK-EGGIDIDDCGRISE 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 +S LD + I Y LEVSSPG +RP+ + D + G V ++ G+ Sbjct: 60 YLSEKLDENDPIPSAYFLEVSSPGAERPLKKAEDVSKAVGKDVFVTTYEPVDGLKEFEGR 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 ++ +E + + AI ++ + SARL Sbjct: 120 LLSFDGDELVVEV--------GKKRHAIPYNKVASARLA 150 >gi|315634095|ref|ZP_07889384.1| YhbC family protein [Aggregatibacter segnis ATCC 33393] gi|315477345|gb|EFU68088.1| YhbC family protein [Aggregatibacter segnis ATCC 33393] Length = 151 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 79/154 (51%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + ++Q +E++ I + L +++F+++ +G +T+ DC ++S+ +S + Sbjct: 4 LEQKLQDLLQGSVEDLGCELWGIECQRVGRYLTVRLFIDK-EGGVTVDDCADVSRQVSAV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ + + R+ G + + + D++K G++ Sbjct: 63 LDVEDPIADKYNLEVSSPGLDRPLFTLAQYTRYVGQEIVVHLRIPVADRRKWQGELAKIE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L +K + ++F ++ A ++ Sbjct: 123 NDMITLIVDK--------QEQVLAFGNIQKANVV 148 >gi|326204062|ref|ZP_08193923.1| protein of unknown function DUF150 [Clostridium papyrosolvens DSM 2782] gi|325985829|gb|EGD46664.1| protein of unknown function DUF150 [Clostridium papyrosolvens DSM 2782] Length = 152 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 78/143 (54%), Gaps = 2/143 (1%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQA 75 + ++ ++ PV+E +++ V + ++ N L++++++ G +++ DC+ +S+ Sbjct: 1 MKKNIQQTVTELVSPVVENLNYELVDVEYVKEGANWYLRVYIDKP-GGISIDDCQAVSEQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LD + I+ Y LEVSSPG+DRP+ + DF ++ G +V ++ K+ G++ Sbjct: 60 VSELLDKNDPIDQSYYLEVSSPGLDRPLKTEKDFTKYKGELVEVKVFQPIDGKKIFEGEL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNEL 158 +G + + ++ + + Sbjct: 120 VGLMDNFIVISQDGHDVQFERDK 142 >gi|157825876|ref|YP_001493596.1| hypothetical protein A1C_04075 [Rickettsia akari str. Hartford] gi|166979960|sp|A8GNW3|RIMP_RICAH RecName: Full=Ribosome maturation factor rimP gi|157799834|gb|ABV75088.1| hypothetical protein A1C_04075 [Rickettsia akari str. Hartford] Length = 166 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 47/164 (28%), Positives = 90/164 (54%), Gaps = 9/164 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-MTLRDCEELSQAISPI 79 + I++VI+ + +M F V I + +++I ++ +G +++ DC + S IS I Sbjct: 4 IEQQITNVIEKSLTDMGFELVLIKFKGVNHKVVEILIDSLNGEKISVADCTKASSTISAI 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE++IE Y LEV+S G++RP+V+ ++ R+ G V ++ K + GKI+ Sbjct: 64 LDVEDLIEDAYSLEVASSGLERPLVKFENYNRFLGREVKVKLKELLNGKTRYQGKIIKAE 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 +L+ E ++ I +D + +A L++T+E+L+ L Sbjct: 124 NNKVYLKCE--------AQEVLIDYDLIKNANLVLTEEVLKKLL 159 >gi|153207258|ref|ZP_01946022.1| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177'] gi|165918794|ref|ZP_02218880.1| conserved hypothetical protein [Coxiella burnetii RSA 334] gi|212218227|ref|YP_002305014.1| hypothetical protein CbuK_0601 [Coxiella burnetii CbuK_Q154] gi|226707776|sp|B6J6A9|RIMP_COXB1 RecName: Full=Ribosome maturation factor rimP gi|120576746|gb|EAX33370.1| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177'] gi|165917518|gb|EDR36122.1| conserved hypothetical protein [Coxiella burnetii RSA 334] gi|212012489|gb|ACJ19869.1| hypothetical cytosolic protein [Coxiella burnetii CbuK_Q154] Length = 153 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 42/161 (26%), Positives = 75/161 (46%), Gaps = 11/161 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M A + +I P +E + F V +LQ+FV++ G + L +C ++S+ IS Sbjct: 1 MSQARTLHRLIAPAVEALGFELVGCELFRRGATTILQVFVDKP-GGIGLDECAKVSRQIS 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I G Y LEVSSPG++RP+ + + R+ G+ + +++ G I+ Sbjct: 60 AVLDVEDPIRGRYTLEVSSPGLERPLYTANHYRRFIGNKAKIRLREPREGQRQFRGMIVA 119 Query: 138 TSETG-FFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 L+ + + + + + A LI E Sbjct: 120 VDNEEQVTLQLDNKI--------LKVPLGEIEKANLIADFE 152 >gi|332188274|ref|ZP_08390001.1| hypothetical protein SUS17_3404 [Sphingomonas sp. S17] gi|332011670|gb|EGI53748.1| hypothetical protein SUS17_3404 [Sphingomonas sp. S17] Length = 192 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 14/171 (8%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDD-GNMTLRDCEELSQAI 76 M ++ +I+P + + F V++ + + LQ+ ER D + + DC +LS+ I Sbjct: 1 MADIALLTQLIEPEAKALGFELVRVKMYGGTSDPTLQVMAERPDTRQLNIDDCADLSRRI 60 Query: 77 SPILDV-----ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 S ++D + I+ YRLEVSSPGIDRP+ R DF W GH + +++ Sbjct: 61 SDVMDALEEQGRDPIDHAYRLEVSSPGIDRPLTRLKDFADWAGHEARITLAEKLNGRKQF 120 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS 182 G + G + E++ + F ++ A+L++TD L+ A+ Sbjct: 121 KGDLAGIEGDNVIIVD-------GEEVRHKLPFAAIEDAKLVMTDRLIAAT 164 >gi|78044682|ref|YP_360590.1| hypothetical protein CHY_1770 [Carboxydothermus hydrogenoformans Z-2901] gi|91208344|sp|Q3AB94|RIMP_CARHZ RecName: Full=Ribosome maturation factor rimP gi|77996797|gb|ABB15696.1| conserved hypothetical protein [Carboxydothermus hydrogenoformans Z-2901] Length = 154 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 79/160 (49%), Gaps = 10/160 (6%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQA 75 + G+ + + + V E++ V + ++E L+I++++D+ + L DC+ S+ Sbjct: 3 RNKGIEQKVWPLAERVGGELNLEVVDVEFVKEAGRYFLRIYIDKDE-GVDLDDCQNFSER 61 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I ILD E+ I Y LEVSSPGI+RP+ + +DF ++ G + + +++ GK+ Sbjct: 62 IGVILDEEDPIPQSYYLEVSSPGIERPLKKLADFEKFAGREAQIKTFAAIEGQKQFKGKL 121 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +G + ++ + ++ I + + A L Sbjct: 122 LGVRDGQVVID--------AGKGEVQIPLEQIAKANLTFD 153 >gi|23099049|ref|NP_692515.1| hypothetical protein OB1594 [Oceanobacillus iheyensis HTE831] gi|34223115|sp|Q8EQU5|RIMP_OCEIH RecName: Full=Ribosome maturation factor rimP gi|22777277|dbj|BAC13550.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 156 Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 77/160 (48%), Gaps = 6/160 (3%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQA 75 + ++ P++EE + V I ++ KN L++++++ +G + + +C E+S+ Sbjct: 1 MSSHVVSLTEELVTPILEEKNLELVDIEYVKEGKNWFLRVYIDK-EGGIDIMECGEVSEL 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LD + I Y LEVSSPG++RP+ +K DF G + ++ ++ G + Sbjct: 60 LSEKLDESDPITEAYFLEVSSPGVERPLKKKEDFDASIGKNIFVKLYEPIDGSKEYEGTL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +E + + Q+ I + + AR+ VT Sbjct: 120 QSFDGETVTMEY----KVKTRKKQVEIPYSKIAKARIAVT 155 >gi|157828687|ref|YP_001494929.1| hypothetical protein A1G_04605 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933406|ref|YP_001650195.1| ribosome maturation protein RimP [Rickettsia rickettsii str. Iowa] gi|167012960|sp|A8GSP6|RIMP_RICRS RecName: Full=Ribosome maturation factor rimP gi|189040651|sp|B0BY63|RIMP_RICRO RecName: Full=Ribosome maturation factor rimP gi|157801168|gb|ABV76421.1| hypothetical protein A1G_04605 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908493|gb|ABY72789.1| hypothetical cytosolic protein [Rickettsia rickettsii str. Iowa] Length = 161 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 44/166 (26%), Positives = 88/166 (53%), Gaps = 9/166 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-MTLRDCEELSQAISPI 79 + I++VI+ + +M F V + +++I ++ + +++ DC + S+ IS I Sbjct: 4 IEQQITNVIEESLTDMGFELVLVKFKGVNPKVVEILIDSLNSEKVSVEDCTKASRTISAI 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE++IE Y LEV+S G++RP+V+ ++ R+ V ++ K + GKI+ Sbjct: 64 LDVEDLIEAAYSLEVASSGLERPLVKFENYNRFLEREVKIKLKELLNGKTRYQGKIIKAE 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 +L+ E E ++ I +D + +A L++T+E+ + L Sbjct: 124 NNKIYLKCE--------EQEVLIDYDLIKNANLVLTEEVFKKLLKQ 161 >gi|295706247|ref|YP_003599322.1| hypothetical protein BMD_4142 [Bacillus megaterium DSM 319] gi|294803906|gb|ADF40972.1| conserved hypothetical protein [Bacillus megaterium DSM 319] Length = 156 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 72/158 (45%), Gaps = 6/158 (3%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQA 75 + + ++ P++EEM+ V+I ++ K+ L++F++ D + + DC +S+ Sbjct: 1 MSKNVKQTVEEMVSPILEEMNLELVEIEYVKEGKDWFLRVFIDS-DTGVDIEDCGAVSEK 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +D + I +Y LEVSSPG +RP+ + DF R G V + ++ G++ Sbjct: 60 LSEKMDAVDPIPHNYFLEVSSPGAERPLKKDKDFERAIGKHVYIKTYEPIEGAKEFEGEL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + + +D + ARL Sbjct: 120 QSFDGETVTLSI----RIKTRTKTVVLPYDKVAFARLA 153 >gi|34223001|sp|Q9AC22|RIMP_CAUCR RecName: Full=Ribosome maturation factor rimP Length = 178 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 48/168 (28%), Positives = 84/168 (50%), Gaps = 12/168 (7%) Query: 28 VIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERD------DGNMTLRDCEELSQAISPIL 80 ++ PV E + + V++ L+ + LQI E G+M + DC +LS+A+S +L Sbjct: 1 MLDPVAESLGYEIVRLRLMGGTEQRRLQIMAEHPLLEDGSGGDMNVEDCAKLSRAVSEVL 60 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D + I G Y LEVSSPGIDRP+ R DF + G E+ + +++ G++ G + Sbjct: 61 DAADPIAGEYTLEVSSPGIDRPLTRLKDFDDYAGLEARIELDRVAEGRKRFKGELAGVED 120 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGS 188 L E +++ + F ++ A+L++TD L+ + Sbjct: 121 DQVGLNIEGE-----DDVTVYFPFAWVIDAKLVMTDALMERGAKQRAA 163 >gi|197106903|ref|YP_002132280.1| hypothetical protein PHZ_c3442 [Phenylobacterium zucineum HLK1] gi|259586178|sp|B4RC58|RIMP_PHEZH RecName: Full=Ribosome maturation factor rimP gi|196480323|gb|ACG79851.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1] Length = 187 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 14/166 (8%) Query: 31 PVIEEMSFRSVQISLLEE--KNLLLQIFVERD------DGNMTLRDCEELSQAISPILDV 82 PV E + + V++ L+ LQI ER G+M + DC +LS+A+S +LD Sbjct: 17 PVAEAVGYEIVRLRLMGGERNQRRLQIMAERPLLEDGTGGDMNVEDCAKLSRAVSEVLDA 76 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 + I G Y LEVSSPG+DRP+ R DF + G+ E+ + +++ G + G Sbjct: 77 ADPISGEYTLEVSSPGVDRPLTRLKDFDTYEGYEARLELDRLAEGRKRFRGVLAGVEGDQ 136 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGS 188 ++ E E + F ++ A+L++TDEL++ + Sbjct: 137 VAIDLEG------EEETALVPFAWIVEAKLVLTDELMKRGAQTRAA 176 >gi|163941554|ref|YP_001646438.1| hypothetical protein BcerKBAB4_3639 [Bacillus weihenstephanensis KBAB4] gi|226705817|sp|A9VT54|RIMP_BACWK RecName: Full=Ribosome maturation factor rimP gi|163863751|gb|ABY44810.1| protein of unknown function DUF150 [Bacillus weihenstephanensis KBAB4] Length = 156 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 42/160 (26%), Positives = 80/160 (50%), Gaps = 6/160 (3%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQA 75 D + + + QP++EE++ V + ++E + L++F++ + + + +C +S+ Sbjct: 1 MDKKVTEIVEAFAQPIVEELNLELVDVEYVQEGQDWFLRVFIDS-EKGVEIEECGAVSER 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ GK+ Sbjct: 60 LSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYKPIDGEKMFEGKL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + L + K +I I D + +ARL VT Sbjct: 120 LSYDGNTITLLLTIKTRKK----EIQIPMDKVANARLAVT 155 >gi|134299808|ref|YP_001113304.1| hypothetical protein Dred_1961 [Desulfotomaculum reducens MI-1] gi|259585752|sp|A4J5X6|RIMP_DESRM RecName: Full=Ribosome maturation factor rimP gi|134052508|gb|ABO50479.1| protein of unknown function DUF150 [Desulfotomaculum reducens MI-1] Length = 153 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 45/160 (28%), Positives = 81/160 (50%), Gaps = 10/160 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 + ++ + P++EE V + ++ N L+IF+++ G + L DC+ +S+ Sbjct: 1 MAKSTVVEKVTEAVAPIVEEAKLELVDVEYVKEGGNWYLRIFIDKP-GGIELDDCQGVSE 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 I +LD + + Y LEVSSPGI+RP+ + DF ++NGH+V + IGK Sbjct: 60 KIDTLLDEIDPVPQAYFLEVSSPGIERPLKKPQDFEKFNGHLVNITTFAPINGSKNFIGK 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ +E G LE + + Q+ + + +ARL V Sbjct: 120 LLDYNEEGIHLEIKGK--------QVVLPHQQVATARLAV 151 >gi|113969368|ref|YP_733161.1| hypothetical protein Shewmr4_1024 [Shewanella sp. MR-4] gi|114046595|ref|YP_737145.1| hypothetical protein Shewmr7_1089 [Shewanella sp. MR-7] gi|123029878|sp|Q0HLG3|RIMP_SHESM RecName: Full=Ribosome maturation factor rimP gi|123030836|sp|Q0HXR7|RIMP_SHESR RecName: Full=Ribosome maturation factor rimP gi|113884052|gb|ABI38104.1| protein of unknown function DUF150 [Shewanella sp. MR-4] gi|113888037|gb|ABI42088.1| protein of unknown function DUF150 [Shewanella sp. MR-7] Length = 151 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 72/154 (46%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + ++ +E + F+ I + K+ +L++F++ + + + DC +S+ +S + Sbjct: 4 LESRLVDMLTVPVEALGFQLWGIEYVQAGKHSILRVFIDG-ENGINIEDCANVSRQVSAV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ + + G V ++ + + L G I Sbjct: 63 LDVEDPISTEYTLEVSSPGVDRPLFTAEQYAAYVGEDVKLQLTMPVAGSRNLKGAITQVD 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + ++ ++ D++ +I Sbjct: 123 GQMLSLNVNGK--------ELVVALDNIRKGNII 148 >gi|157964684|ref|YP_001499508.1| hypothetical protein RMA_0855 [Rickettsia massiliae MTU5] gi|157844460|gb|ABV84961.1| hypothetical protein RMA_0855 [Rickettsia massiliae MTU5] Length = 164 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 90/166 (54%), Gaps = 9/166 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-MTLRDCEELSQAISPI 79 + I++VI+ + +M F V + + +++I ++ +G +++ DC + S+ IS I Sbjct: 7 IEQQITNVIEESLTDMGFELVLVKVKGVNPKVVEILIDSLNGERISVEDCTKASRTISAI 66 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE++IE Y LEV+S G++RP+V+ ++ R+ V ++ K + GKI+ Sbjct: 67 LDVEDLIEAAYSLEVASSGLERPLVKFENYNRFLEREVKIKLKELLNGKTRYQGKIIKAE 126 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 +L+ E E ++ I +D + +A L++T+E+ + L Sbjct: 127 NNKIYLKCE--------EQEVLIDYDLIKNANLVLTEEVFKKLLKQ 164 >gi|52425501|ref|YP_088638.1| hypothetical protein MS1446 [Mannheimia succiniciproducens MBEL55E] gi|81386924|sp|Q65SK7|RIMP_MANSM RecName: Full=Ribosome maturation factor rimP gi|52307553|gb|AAU38053.1| unknown [Mannheimia succiniciproducens MBEL55E] Length = 151 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 77/155 (49%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ ++Q +E++ I + +++++++ +G +T+ DC ++S+ +S I Sbjct: 4 LEQNLQQMLQGSVEDLGCELWGIECQRAGRFMTVRLYIDK-EGGVTVDDCADVSRQVSAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ F R+ G ++ + + D++K GK+ Sbjct: 63 LDVEDPIADKYNLEVSSPGLDRPLFTLEQFQRYVGQEISVHLRIPMLDRRKWQGKLERIE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L + + + + ++ A +I Sbjct: 123 GDMLTLIVDD--------QEQSFALSNIQKANVIP 149 >gi|294142062|ref|YP_003558040.1| hypothetical protein SVI_3291 [Shewanella violacea DSS12] gi|293328531|dbj|BAJ03262.1| conserved hypothetical protein [Shewanella violacea DSS12] Length = 151 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 72/154 (46%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + +++ +E + R + + K+ L+++++ D + + DC E S+ IS + Sbjct: 4 IEKKLEEMLKSPVEALGHRLWGLEYIQAGKHSTLRVYIDN-DKGIFIEDCAETSRQISAV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ + + V ++ + + L G ++G Sbjct: 63 LDVEDPISTEYTLEVSSPGVDRPLFSSEQYASYIDETVKIQLTMPVAGSRNLKGTVIGVE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + ++ I+ D++ LI Sbjct: 123 GQMLTISVDG--------NELIIALDNIRRGNLI 148 >gi|24372785|ref|NP_716827.1| hypothetical protein SO_1202 [Shewanella oneidensis MR-1] gi|34222878|sp|Q8EHL7|RIMP_SHEON RecName: Full=Ribosome maturation factor rimP gi|24346870|gb|AAN54272.1|AE015564_3 conserved hypothetical protein [Shewanella oneidensis MR-1] Length = 151 Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 74/154 (48%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ +++ +E + F+ I + K+ +L++F++ + + + DC +S+ +S + Sbjct: 4 LESRLADMLKVPVEALGFQLWGIEYVQAGKHSILRVFIDG-ENGINIEDCANVSRQVSAV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ + + G V ++ + + L G I Sbjct: 63 LDVEDPISTEYTLEVSSPGVDRPLFTAEQYAAYVGEDVKLQLTMPVAGSRNLKGAITQVD 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + ++ ++ D++ +I Sbjct: 123 GQMLSVNVNGK--------ELVVALDNIRKGNII 148 >gi|304310505|ref|YP_003810103.1| Protein of unknown function DUF150 [gamma proteobacterium HdN1] gi|301796238|emb|CBL44446.1| Protein of unknown function DUF150 [gamma proteobacterium HdN1] Length = 154 Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 75/164 (45%), Gaps = 11/164 (6%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELS 73 + L + ++ P ++ + K+ +L++F++ + +T+ DCE +S Sbjct: 1 MVVSSKLEN-LKVMLTPAVQAAGMELWGLEFFPQGKHSVLRLFIDS-ENGVTIDDCERVS 58 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 +S +LDVE+ + G Y LEVSSPG+DRP+ R+ + + ++ K+ +G Sbjct: 59 HQVSAVLDVEDPVSGEYHLEVSSPGMDRPLFGAEQLGRYIHCEIKVRLKMAVDGKRNFVG 118 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 K++ SE E + + ++ + A L+ E Sbjct: 119 KLLAVSEDRCSFEVDG--------APLVVATSQIDKANLVPNFE 154 >gi|323495467|ref|ZP_08100542.1| ribosome maturation protein RimP [Vibrio sinaloensis DSM 21326] gi|323319464|gb|EGA72400.1| ribosome maturation protein RimP [Vibrio sinaloensis DSM 21326] Length = 140 Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 73/147 (49%), Gaps = 10/147 (6%) Query: 29 IQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 ++ + + V + + + L+IF++ + + + DC E+S+ +S ++DVE+ I Sbjct: 1 LEAPVAASGYELVGLEFIRAGEHSTLRIFIDH-ENGINVEDCAEVSRQVSAVMDVEDPIT 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LEVSSPG++RP+ + + + ++ GH V+ + ++ G+++K G I + Sbjct: 60 VAYNLEVSSPGLERPLFKAAHYEQFIGHEVSIVLKMAVGNRRKWKGVIHSVDGETISVTV 119 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 E E + ++ A LI Sbjct: 120 EGSEE--------EFALSNISKANLIP 138 >gi|157692342|ref|YP_001486804.1| hypothetical protein BPUM_1562 [Bacillus pumilus SAFR-032] gi|194014514|ref|ZP_03053131.1| protein YlxS (P15A) [Bacillus pumilus ATCC 7061] gi|166979791|sp|A8FDC7|RIMP_BACP2 RecName: Full=Ribosome maturation factor rimP gi|157681100|gb|ABV62244.1| hypothetical protein BPUM_1562 [Bacillus pumilus SAFR-032] gi|194013540|gb|EDW23105.1| protein YlxS (P15A) [Bacillus pumilus ATCC 7061] Length = 157 Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 80/159 (50%), Gaps = 6/159 (3%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQA 75 + +S ++QP+++ + V + ++E N L++F++ D + + +C ++S+A Sbjct: 1 MSKKVVDVVSEMVQPILDGLQLELVDVEFVKEGQNWFLRVFIDS-DKGVDIEECAKVSEA 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LD + I +Y LEVSSPG +RP+ +K+DF + G V + ++ G++ Sbjct: 60 LSEKLDEADPISQNYFLEVSSPGAERPLKKKADFEKALGKNVFMKTYEPIDGEKAFEGEL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + +I I ++ + +ARL V Sbjct: 120 TSFDGEIATVTV----KIKTRKKEINIPYEKIANARLAV 154 >gi|254721997|ref|ZP_05183786.1| hypothetical protein BantA1_05952 [Bacillus anthracis str. A1055] Length = 156 Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 43/160 (26%), Positives = 81/160 (50%), Gaps = 6/160 (3%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQA 75 D + + + QP++EE++ V + ++E + L++F++ + + + +C +S+ Sbjct: 1 MDKKVTEVVEAFAQPIVEELNLEFVDVEYVKEGQDWFLRVFIDS-EKGVDIEECGAVSER 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ GK+ Sbjct: 60 LSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMFEGKM 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + T L + K +I I D + +ARL VT Sbjct: 120 LSYDGTTITLLLTIKTRKK----EIQIPMDKVANARLAVT 155 >gi|254516619|ref|ZP_05128678.1| conserved hypothetical protein [gamma proteobacterium NOR5-3] gi|219675042|gb|EED31409.1| conserved hypothetical protein [gamma proteobacterium NOR5-3] Length = 151 Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 71/157 (45%), Gaps = 10/157 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + +++ P +E + F ++ K+ +L++++E + + + DC +S+ + Sbjct: 2 SAKENKLQTLLAPTVEALGFELWGTEYLIQGKHSVLRLYIES-ENGVQVSDCAAVSEQVG 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE I G Y LEVSSPG+DR + R + + G + + ++K G + G Sbjct: 61 AVLDVEEPISGEYLLEVSSPGVDRRLFRLEQYAAYVGEELELRLRSPFEGRRKFKGILRG 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + L + + + + + A+L + Sbjct: 121 VEDGDVVLLVDD--------HEYLLPYGDVDRAQLTL 149 >gi|290473445|ref|YP_003466312.1| YhbC-like protein (fragment) [Xenorhabdus bovienii SS-2004] gi|289172745|emb|CBJ79516.1| YhbC-like protein (fragment) [Xenorhabdus bovienii SS-2004] Length = 140 Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 74/147 (50%), Gaps = 9/147 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I +E + F V + + + L+++++ ++ +T+ +C ++S +S +LDVE+ I Sbjct: 1 MISAPVEALGFELVGLEFIRARVSTLRVYIDSEE-GITVDNCADVSHQVSAVLDVEDPIS 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LE+SSPG++RP+ + + R+ G V+ + ++ ++++ G I + Sbjct: 60 VLYNLEISSPGLERPLFKAEHYQRFMGEEVSLVLRMAMQNRRRWQGIIKVVDGEMITVTV 119 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 + + E + ++ A L+ Sbjct: 120 DGKDEV--------FALSNIQKANLVP 138 >gi|15892741|ref|NP_360455.1| hypothetical protein RC0818 [Rickettsia conorii str. Malish 7] gi|34222951|sp|Q92HF3|RIMP_RICCN RecName: Full=Ribosome maturation factor rimP gi|15619918|gb|AAL03356.1| unknown [Rickettsia conorii str. Malish 7] Length = 161 Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 44/166 (26%), Positives = 88/166 (53%), Gaps = 9/166 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-MTLRDCEELSQAISPI 79 + I++VI+ + +M F V + +++I ++ + +++ DC + S+ IS I Sbjct: 4 IEQQIANVIEESLTDMGFELVLVKFKGVNPKVVEILIDSLNSEKISVEDCTKASRTISAI 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE++IE Y LEV+S G++RP+V+ ++ R+ V ++ K + GKI+ Sbjct: 64 LDVEDLIEAAYSLEVASSGLERPLVKFENYNRFLEREVKIKLKELLNGKTRYQGKIIKAE 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 +L+ E E ++ I +D + +A L++T+E+ + L Sbjct: 124 NNKIYLKCE--------EQEVLIDYDLIKNANLVLTEEVFKKLLKQ 161 >gi|297180709|gb|ADI16918.1| uncharacterized protein conserved in bacteria [uncultured gamma proteobacterium HF0010_16J05] Length = 171 Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 72/157 (45%), Gaps = 10/157 (6%) Query: 22 AGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 I +I P +E + I + K L I++ER D + + C +S+ + +L Sbjct: 24 EKQIEELIAPTVESLGCEVWGIEYLSQGKYSKLLIYIERAD-GIDVDLCATVSKHVGDLL 82 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE +I Y LEVSSPG+DR + ++ +L G V + ++++ G + G + Sbjct: 83 DVEELISSRYTLEVSSPGMDRVLFKEQHYLDHVGERVEIRLNYPFEGRKRISGILAGIED 142 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 ++ E + + +++ ARL+ T + Sbjct: 143 QTAIVQ--------EAEDEFLLPLENVQKARLVPTFD 171 >gi|86157526|ref|YP_464311.1| hypothetical protein Adeh_1099 [Anaeromyxobacter dehalogenans 2CP-C] gi|123499926|sp|Q2IPZ0|RIMP_ANADE RecName: Full=Ribosome maturation factor rimP gi|85774037|gb|ABC80874.1| hypothetical protein Adeh_1099 [Anaeromyxobacter dehalogenans 2CP-C] Length = 171 Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 43/170 (25%), Positives = 78/170 (45%), Gaps = 17/170 (10%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 G+ +A + S+++PV+E + V++ L++F+++ G + + DC+ +S+ Sbjct: 4 IGEQSIAEQVRSLLEPVLERDGYELVEVEWARLAGRWTLRVFIDKA-GGVGIDDCQAVSK 62 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD------- 127 + PILDV + IE Y LEVSSPG+DRP+ + DF R+ G V + Sbjct: 63 TVEPILDVADFIEPAYDLEVSSPGLDRPLRKPRDFDRYAGQRVHVKAYGPVAGTAPGSPA 122 Query: 128 KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 ++ G + G + L+ + + D + A L E Sbjct: 123 RKHWTGVLKGFRDGAVELDVDGALH--------RVPHDQIAKANLEYDVE 164 >gi|34581536|ref|ZP_00143016.1| hypothetical protein [Rickettsia sibirica 246] gi|229586875|ref|YP_002845376.1| hypothetical protein RAF_ORF0746 [Rickettsia africae ESF-5] gi|259586186|sp|C3PNX3|RIMP_RICAE RecName: Full=Ribosome maturation factor rimP gi|28262921|gb|EAA26425.1| unknown [Rickettsia sibirica 246] gi|228021925|gb|ACP53633.1| Unknown [Rickettsia africae ESF-5] Length = 161 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 44/166 (26%), Positives = 87/166 (52%), Gaps = 9/166 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-MTLRDCEELSQAISPI 79 + I++VI+ + +M F V + +++I ++ + +++ DC + S+ IS I Sbjct: 4 IEQQIANVIEESLTDMGFELVLVKFKGVNPKVVEILIDSLNSEKISVEDCTKASRTISAI 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE++IE Y LEV+S G++RP+V+ ++ R+ V + K + GKI+ Sbjct: 64 LDVEDLIEAAYSLEVASSGLERPLVKFENYNRFLEREVKITLKELLNGKTRYQGKIIKAE 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 +L+ E E ++ I +D + +A L++T+E+ + L Sbjct: 124 NNKIYLKCE--------EQEVLIDYDLIKNANLVLTEEVFKKLLKQ 161 >gi|220927906|ref|YP_002504815.1| hypothetical protein Ccel_0453 [Clostridium cellulolyticum H10] gi|254803925|sp|B8I6E3|RIMP_CLOCE RecName: Full=Ribosome maturation factor rimP gi|219998234|gb|ACL74835.1| protein of unknown function DUF150 [Clostridium cellulolyticum H10] Length = 152 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 79/143 (55%), Gaps = 2/143 (1%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQA 75 + ++ ++ PV+E +++ V I ++ N L++++++ G +++ DC+ +S+ Sbjct: 1 MKKNIQQTVTELVSPVVESLNYELVDIEYVKEGANWYLRVYIDKP-GGISIDDCQAVSEQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LD ++ I+ Y LEVSSPG+DRP+ + DF ++ G +V ++ K+ G++ Sbjct: 60 VSDLLDKDDPIDQSYFLEVSSPGLDRPLKTEKDFAKYKGELVEVKVFQPIDGKKIFEGEL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNEL 158 +G + + ++ + + Sbjct: 120 VGLKDNIIVINQDGHNVQFERDE 142 >gi|259586220|sp|A8F225|RIMP_RICM5 RecName: Full=Ribosome maturation factor rimP Length = 161 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 90/166 (54%), Gaps = 9/166 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-MTLRDCEELSQAISPI 79 + I++VI+ + +M F V + + +++I ++ +G +++ DC + S+ IS I Sbjct: 4 IEQQITNVIEESLTDMGFELVLVKVKGVNPKVVEILIDSLNGERISVEDCTKASRTISAI 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE++IE Y LEV+S G++RP+V+ ++ R+ V ++ K + GKI+ Sbjct: 64 LDVEDLIEAAYSLEVASSGLERPLVKFENYNRFLEREVKIKLKELLNGKTRYQGKIIKAE 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNN 185 +L+ E E ++ I +D + +A L++T+E+ + L Sbjct: 124 NNKIYLKCE--------EQEVLIDYDLIKNANLVLTEEVFKKLLKQ 161 >gi|120597898|ref|YP_962472.1| hypothetical protein Sputw3181_1068 [Shewanella sp. W3-18-1] gi|146293930|ref|YP_001184354.1| hypothetical protein Sputcn32_2836 [Shewanella putrefaciens CN-32] gi|166977876|sp|A1RGX3|RIMP_SHESW RecName: Full=Ribosome maturation factor rimP gi|166988527|sp|A4Y9C2|RIMP_SHEPC RecName: Full=Ribosome maturation factor rimP gi|120557991|gb|ABM23918.1| protein of unknown function DUF150 [Shewanella sp. W3-18-1] gi|145565620|gb|ABP76555.1| protein of unknown function DUF150 [Shewanella putrefaciens CN-32] gi|319427307|gb|ADV55381.1| protein of unknown function DUF150 [Shewanella putrefaciens 200] Length = 151 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 73/154 (47%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ +++ +E + F+ I + K+ +L++F++ + + + DC S+ +S + Sbjct: 4 LESRLAEMLKVPVEALGFQLWGIEYVQAGKHSILRVFIDG-ENGINIEDCANTSRQVSAV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ + + G V ++ + + L G I Sbjct: 63 LDVEDPISTEYTLEVSSPGVDRPLFTAEQYAAYVGEDVKVQLTMPVAGSRNLKGAITKVE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + ++ ++ D++ +I Sbjct: 123 GQMLSLNVNGK--------ELVVALDNIRKGNVI 148 >gi|114562166|ref|YP_749679.1| hypothetical protein Sfri_0988 [Shewanella frigidimarina NCIMB 400] gi|114333459|gb|ABI70841.1| protein of unknown function DUF150 [Shewanella frigidimarina NCIMB 400] Length = 165 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 71/154 (46%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + ++ +E + F+ I + ++ +L++F++ + + + DC E S+ +S + Sbjct: 18 IESKLVEMLTVPVEALGFKLWGIEYIQAGRHSILRVFIDH-ENGINIEDCAEASRQVSAV 76 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +DVE+ I Y LEVSSPG+DRP+ + + G ++ + + L G I Sbjct: 77 MDVEDPISTEYTLEVSSPGVDRPLFTAEQYRAYIGEETKVQLTMPVAGSRNLKGVISSVD 136 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + + ++ D++ +I Sbjct: 137 GQMLTITVDGKD--------LIVALDNIRKGNVI 162 >gi|259586211|sp|A8FYS2|RIMP_SHESH RecName: Full=Ribosome maturation factor rimP Length = 151 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 72/154 (46%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + +++ +E + + + K+ +L+++++ + + + DC E S+ +S + Sbjct: 4 IENRLEEMLKSPVEALGHTLWGLEYVQAGKHSILRVYIDN-EKGIFIEDCAETSRQVSAV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ + + + V ++ + + L G I G Sbjct: 63 LDVEDPISTEYTLEVSSPGVDRPLFKAEQYAAYIDETVKIQLTMPVAGSRNLKGTITGIE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + ++ I+ D++ LI Sbjct: 123 GQMLSLTVDG--------NELIIALDNIRKGNLI 148 >gi|51473735|ref|YP_067492.1| hypothetical protein RT0541 [Rickettsia typhi str. Wilmington] gi|81390042|sp|Q68WI2|RIMP_RICTY RecName: Full=Ribosome maturation factor rimP gi|51460047|gb|AAU04010.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington] Length = 161 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 44/164 (26%), Positives = 85/164 (51%), Gaps = 9/164 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDD-GNMTLRDCEELSQAISPI 79 + I+++I+ + +M F V + +++I ++ + +++ DC +S+ IS I Sbjct: 4 IEQQITNIIEESLTDMGFELVLVKFKGVNTKVVEILIDSLNGNKISIEDCTNVSRTISAI 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE++IE Y LEVSS GI+R +V+ ++ R+ G V ++ K GKI+ Sbjct: 64 LDVEDLIEDAYSLEVSSSGIERKLVKFENYNRFLGREVKVKLKALLNGKTLYQGKIIKAE 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 +L E ++ I F+ + +A L++T+E+ + L Sbjct: 124 NNKIYL--------KCAEQEVLIDFNLIKNANLVLTEEVFKKLL 159 >gi|52080266|ref|YP_079057.1| hypothetical protein BL01228 [Bacillus licheniformis ATCC 14580] gi|319645954|ref|ZP_08000184.1| hypothetical protein HMPREF1012_01218 [Bacillus sp. BT1B_CT2] gi|91208394|sp|Q65JI5|RIMP_BACLD RecName: Full=Ribosome maturation factor rimP gi|52003477|gb|AAU23419.1| conserved hypothetical protein [Bacillus licheniformis ATCC 14580] gi|317391704|gb|EFV72501.1| hypothetical protein HMPREF1012_01218 [Bacillus sp. BT1B_CT2] Length = 157 Score = 124 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 79/159 (49%), Gaps = 6/159 (3%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQA 75 + +S ++QP+++ + V I ++E + L++F++ DD + + +C ++S+A Sbjct: 1 MSNKVIDTVSEMVQPILDNLQLELVDIEFVKEGQSWFLRVFIDSDD-GVDIEECAKVSEA 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LD + I+ +Y LEVSSPG +RP+ +++DF++ G V + ++ G++ Sbjct: 60 LSEKLDEADPIKQNYFLEVSSPGAERPLKKEADFMKALGKNVYIKTYEPIEGNKEFEGEL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + I I +D + ARL V Sbjct: 120 SAFDGENVEVTV----MIKTRRKTINIPYDKVAKARLAV 154 >gi|218288336|ref|ZP_03492635.1| protein of unknown function DUF150 [Alicyclobacillus acidocaldarius LAA1] gi|218241695|gb|EED08868.1| protein of unknown function DUF150 [Alicyclobacillus acidocaldarius LAA1] Length = 157 Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats. Identities = 39/160 (24%), Positives = 75/160 (46%), Gaps = 6/160 (3%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ P++E + V I + KN L++++++ G + + DC +S+ Sbjct: 1 MTRDRVTEIVERLVLPIVEREAVELVDIEYTKEGKNWYLRVYIDKP-GGVDIDDCSRVSE 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 +S LD + I Y LEVSSPG +RP+ R +DF R G V + + G Sbjct: 60 QLSEELDRVDPIPNAYFLEVSSPGAERPLKRPADFERAVGRYVHVSLYEPLEGAKTHEGT 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ LE ++R + + +A+ + + ARL + Sbjct: 120 LVSYDGERLILEIKRRSKT----VTLAVPMEKIAHARLAL 155 >gi|330722349|gb|EGH00206.1| NusA [gamma proteobacterium IMCC2047] Length = 150 Score = 123 bits (310), Expect = 9e-27, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 77/151 (50%), Gaps = 10/151 (6%) Query: 25 ISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +++PV+E + + +++ + L++++E D + + DCE +S+ +S + DVE Sbjct: 7 LTELVRPVVEGLELEFWGLEMVVQGREKTLRVYIES-DKGIAVEDCEAVSRQLSSLFDVE 65 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I G Y LEVSSPG+DRP+ + F ++ G V ++ + ++ G + G + Sbjct: 66 DPIAGEYTLEVSSPGLDRPLFEAAQFAQYVGETVKIKLRSAFEGRRNFRGALSGVEDDEV 125 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + + +S+ A ++ Sbjct: 126 IIVVDG--------HEYILPIESVEKANIVP 148 >gi|304414227|ref|ZP_07395595.1| hypothetical protein REG_1311 [Candidatus Regiella insecticola LSR1] gi|304283441|gb|EFL91837.1| hypothetical protein REG_1311 [Candidatus Regiella insecticola LSR1] Length = 154 Score = 123 bits (310), Expect = 9e-27, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 69/151 (45%), Gaps = 9/151 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L ++ +I ++ + + V + + + L+I+++ D +T+ C ++S +S +L Sbjct: 8 LEQKLTEIISAPVKALGHKLVGVEFIPGRQSTLRIYIDNCD-GVTVDMCADVSYQVSAVL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE I Y LEVSSPG++R + D+ + G + + ++ +++K G I Sbjct: 67 DVEEPITCPYNLEVSSPGLERLLFTAEDYTDYLGERINLTLRIAMQNRRKWQGIIKAVDG 126 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 + + + E + ++ A Sbjct: 127 EMIIVTVDGKDEV--------FALSNIRKAN 149 >gi|30021906|ref|NP_833537.1| hypothetical protein BC3815 [Bacillus cereus ATCC 14579] gi|206972652|ref|ZP_03233593.1| conserved hypothetical protein [Bacillus cereus AH1134] gi|218235854|ref|YP_002368618.1| hypothetical protein BCB4264_A3915 [Bacillus cereus B4264] gi|296504312|ref|YP_003666012.1| hypothetical protein BMB171_C3482 [Bacillus thuringiensis BMB171] gi|34222809|sp|Q812X5|RIMP_BACCR RecName: Full=Ribosome maturation factor rimP gi|226706108|sp|B7HDU0|RIMP_BACC4 RecName: Full=Ribosome maturation factor rimP gi|29897462|gb|AAP10738.1| hypothetical Cytosolic Protein [Bacillus cereus ATCC 14579] gi|206732409|gb|EDZ49590.1| conserved hypothetical protein [Bacillus cereus AH1134] gi|218163811|gb|ACK63803.1| conserved hypothetical protein [Bacillus cereus B4264] gi|296325364|gb|ADH08292.1| hypothetical protein BMB171_C3482 [Bacillus thuringiensis BMB171] Length = 156 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 44/160 (27%), Positives = 82/160 (51%), Gaps = 6/160 (3%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQA 75 D + + + QP++EE++ V + ++E + L++F++ + + + +C +S+ Sbjct: 1 MDKKVTEVVEAFAQPIVEELNLELVDVEYVKEGQDWFLRVFIDS-EKGVDIEECGAVSER 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ GK+ Sbjct: 60 LSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMFEGKL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + T L + K +I IS D + +ARL VT Sbjct: 120 LSYDGTTITLLLTIKTRKK----EIQISMDKVANARLAVT 155 >gi|292572171|gb|ADE30086.1| hypothetical protein rpr22_CDS533 [Rickettsia prowazekii Rp22] Length = 161 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 44/164 (26%), Positives = 87/164 (53%), Gaps = 9/164 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDD-GNMTLRDCEELSQAISPI 79 +A I+++I+ + +M F V + ++++ ++ + +++ DC +S+ IS I Sbjct: 4 IAQQITNIIEESLTDMGFELVLVKFKGVSPKVVEVLIDSLNGNKISIEDCTNVSRTISAI 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE++IE Y LEVSS GI+R +V+ ++ R+ G V ++ K GKI+ Sbjct: 64 LDVEDLIEEAYSLEVSSSGIERTLVKFENYNRFLGREVKIKLKELLNGKTLYQGKIIKAE 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASL 183 +L E +++I F+ + +A L++T+E+ + L Sbjct: 124 NNKIYL--------KCAEQEVSIDFNLIRNANLVLTEEVFKKLL 159 >gi|197121570|ref|YP_002133521.1| hypothetical protein AnaeK_1159 [Anaeromyxobacter sp. K] gi|259585696|sp|B4UHF7|RIMP_ANASK RecName: Full=Ribosome maturation factor rimP gi|196171419|gb|ACG72392.1| protein of unknown function DUF150 [Anaeromyxobacter sp. K] Length = 171 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 43/170 (25%), Positives = 79/170 (46%), Gaps = 17/170 (10%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 G+ +A + S+++PV+E + V++ L++F+++ G + + DC+ +S+ Sbjct: 4 IGEQSIAEQVRSLLEPVLERDGYELVEVEWARLAGRWTLRVFIDKA-GGVGIDDCQAVSK 62 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD------- 127 + PILDV ++IE Y LEVSSPG+DRP+ + DF R+ G V + Sbjct: 63 TVEPILDVADVIEPAYDLEVSSPGLDRPLRKPRDFDRYAGQRVHVKAYGPVAGTAPGAPA 122 Query: 128 KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 ++ G + G + L+ + + D + A L E Sbjct: 123 RKHWTGVLKGFRDGAVELDVDGVLH--------RVPHDQIAKANLEYDVE 164 >gi|294624664|ref|ZP_06703334.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666763|ref|ZP_06731997.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292601020|gb|EFF45087.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603424|gb|EFF46841.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 196 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 78/160 (48%), Gaps = 12/160 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVE-----RDDGNMTLRDCEELSQA 75 A +I++++ P +E + + + L L+++++ + + + + DCE +S+ Sbjct: 5 ATEIANLLSPTVESLGLELLGVEYLPAPGGATLRLYIDVPLAEQPERVINVDDCERVSRE 64 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LDVE+ I G+Y LEVSSPG+DRP+ F R G + L+ +++ G+I Sbjct: 65 VSAQLDVEDPISGNYTLEVSSPGVDRPLFTLEQFARHTGESAKIVLKLAQDGRRRFQGEI 124 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + ++ + I +D++ AR++ Sbjct: 125 LRIDAEA------DAVVFAVDGKDVQIGYDNIDKARIVPD 158 >gi|89895267|ref|YP_518754.1| hypothetical protein DSY2521 [Desulfitobacterium hafniense Y51] gi|122482374|sp|Q24UI2|RIMP_DESHY RecName: Full=Ribosome maturation factor rimP gi|89334715|dbj|BAE84310.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 152 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 10/157 (6%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQA 75 + + ++I PVI E V + ++ + L+I++++ +G + + DC +S Sbjct: 1 MGESIMEQVEAIIAPVITEQGLELVDVEYVKEGAHWYLRIYIDK-EGGVDIDDCTNVSHL 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LD + I Y LEVSSPG++RP+ + DF R+ G +V + ++ G + Sbjct: 60 VSEVLDKHDPIAQAYMLEVSSPGLERPLKKDEDFERFTGKLVRVLTKEAYQGYKEFTGYL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +G E LE EK +AI + A L Sbjct: 120 VGLIEDDIVLEYEKEK--------MAIPRAIVDKANL 148 >gi|116624261|ref|YP_826417.1| hypothetical protein Acid_5179 [Candidatus Solibacter usitatus Ellin6076] gi|116227423|gb|ABJ86132.1| protein of unknown function DUF150 [Candidatus Solibacter usitatus Ellin6076] Length = 174 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 71/159 (44%), Gaps = 9/159 (5%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQA 75 + + V Q V + V++ + + L++I +++ + +T DC+ +S Sbjct: 22 MQEAVTSKVEEVAQRVAQSEGLELVEVEVKGGGSARLVRISIDKPE-GVTHADCQTVSDK 80 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 + IL+ E+ I GHY LEVSSPG++R +++ D+ R++G + ++ G + Sbjct: 81 VGEILEAEDAIPGHYTLEVSSPGVERKLLKPQDYQRFHGQKAKITVREEVDGRRTWEGTL 140 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G ++ LE + FD + A L Sbjct: 141 AGFADGVISLEV-------APGEIRRLPFDQVKKANLKF 172 >gi|29654725|ref|NP_820417.1| hypothetical cytosolic protein [Coxiella burnetii RSA 493] gi|161830413|ref|YP_001597278.1| hypothetical protein COXBURSA331_A1602 [Coxiella burnetii RSA 331] gi|34223106|sp|Q83BR9|RIMP_COXBU RecName: Full=Ribosome maturation factor rimP gi|189038961|sp|A9N8V8|RIMP_COXBR RecName: Full=Ribosome maturation factor rimP gi|29541993|gb|AAO90931.1| hypothetical cytosolic protein [Coxiella burnetii RSA 493] gi|161762280|gb|ABX77922.1| conserved hypothetical protein [Coxiella burnetii RSA 331] Length = 153 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 11/161 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M A + +I P +E + F V +LQ+FV++ G + L +C ++S+ IS Sbjct: 1 MSQARTLHRLIAPAVEALGFELVGCELFRRGATTILQVFVDKP-GGIGLDECAKVSRQIS 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I G Y LEVSSPG++RP+ + + R+ G+ + +++ G ++ Sbjct: 60 AVLDVEDPIRGRYTLEVSSPGLERPLYTANHYRRFIGNKAKIRLREPREGQRQFRGMVVA 119 Query: 138 TSETG-FFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 L+ + + + +S + A LI E Sbjct: 120 VDNEEQVTLQLDNKI--------LKVSLGEIEKANLIADFE 152 >gi|220916333|ref|YP_002491637.1| protein of unknown function DUF150 [Anaeromyxobacter dehalogenans 2CP-1] gi|259585694|sp|B8JFY3|RIMP_ANAD2 RecName: Full=Ribosome maturation factor rimP gi|219954187|gb|ACL64571.1| protein of unknown function DUF150 [Anaeromyxobacter dehalogenans 2CP-1] Length = 171 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 42/170 (24%), Positives = 78/170 (45%), Gaps = 17/170 (10%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 G+ +A + +++PV+E + V++ L++F+++ G + + DC+ +S+ Sbjct: 4 IGEQSIAEQVRRLLEPVLERDGYELVEVEWARLAGRWTLRVFIDKA-GGVGIDDCQAVSK 62 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD------- 127 + PILDV ++IE Y LEVSSPG+DRP+ + DF R+ G V + Sbjct: 63 TVEPILDVADVIEPAYDLEVSSPGLDRPLRKPGDFDRYAGQRVHVKAYGPVAGTAPGAPA 122 Query: 128 KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 ++ G + G + L+ + + D + A L E Sbjct: 123 RKHWTGVLKGFRDGAVELDVDGVLH--------RVPHDQIAKANLEYDVE 164 >gi|301063518|ref|ZP_07204050.1| conserved hypothetical protein [delta proteobacterium NaphS2] gi|300442457|gb|EFK06690.1| conserved hypothetical protein [delta proteobacterium NaphS2] Length = 157 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 76/156 (48%), Gaps = 10/156 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L +I ++++PV++EM V + + +L+I+ +R +TL DC +S+ I + Sbjct: 5 LLKEIEALVEPVLDEMGIELVDLEYVSGQGRQVLRIYADRP-TGITLDDCAMVSREIGHL 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV ++++ Y LEVSSPG++RP+ R+ DFLR G + + ++ G + Sbjct: 64 LDVSDLLKHQYVLEVSSPGLNRPLKREKDFLRVVGQRIKVQTTAPLKGRRNFSGVLQSVQ 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 ++ + + I S+ A L+ Sbjct: 124 NGMLEIDLDG--------AVVQIPEQSIRKANLVFD 151 >gi|258511412|ref|YP_003184846.1| hypothetical protein Aaci_1431 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478138|gb|ACV58457.1| protein of unknown function DUF150 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 157 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 39/160 (24%), Positives = 75/160 (46%), Gaps = 6/160 (3%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ P++E + V I + KN L++++++ G + + DC +S+ Sbjct: 1 MTRDRVTEIVERLVLPIVEREAVELVDIEYTKEGKNWYLRVYIDKP-GGVDIDDCSRVSE 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 +S LD + I Y LEVSSPG +RP+ R +DF R G V + + G Sbjct: 60 QLSEELDRVDPIPNAYFLEVSSPGAERPLKRPADFERAVGRYVHVSLYEPLMGAKTHEGT 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ LE ++R + + +A+ + + ARL + Sbjct: 120 LVSYDGERLILEIKRRSKT----VTLAVPMEKIAHARLAL 155 >gi|212212196|ref|YP_002303132.1| hypothetical protein CbuG_0575 [Coxiella burnetii CbuG_Q212] gi|226707750|sp|B6IZ59|RIMP_COXB2 RecName: Full=Ribosome maturation factor rimP gi|212010606|gb|ACJ17987.1| hypothetical cytosolic protein [Coxiella burnetii CbuG_Q212] Length = 153 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 44/160 (27%), Positives = 77/160 (48%), Gaps = 12/160 (7%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M A + +I P +E + F V +LQ+FV++ G + L +C ++S+ IS Sbjct: 1 MSQARTLHRLIAPAVEALGFELVGCELFRRGATTILQVFVDKP-GGIGLDECAKVSRQIS 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I G Y LEVSSPG++RP+ + + R+ G+ + +++ G I+ Sbjct: 60 AVLDVEDPIRGRYTLEVSSPGLERPLYTANHYRRFIGNKAKIRLREPREGQRQFRGMIVA 119 Query: 138 TSETG-FFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 L+ + + + +S + A LI TD Sbjct: 120 VDNEEQVTLQLDNKI--------LKVSLGEIEKANLI-TD 150 >gi|285017806|ref|YP_003375517.1| hypothetical protein XALc_1014 [Xanthomonas albilineans GPE PC73] gi|283473024|emb|CBA15529.1| conserved hypothetical protein [Xanthomonas albilineans] Length = 201 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 79/163 (48%), Gaps = 12/163 (7%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVE-----RDDGNMTLRDCEEL 72 A +I++++ P ++ + + L L+++++ + + + + DCE + Sbjct: 2 SDKANEIANLLGPTVDALGLELLGAEYLPASGGATLRLYIDVPLGEQPERMVNIDDCERV 61 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+ +S LDVE+ I G+Y LEVSSPG+DRP+ F R + L +++L Sbjct: 62 SREVSAQLDVEDPISGNYTLEVSSPGVDRPLFTAEQFARHRDESAKVVLKLPQQGRRRLQ 121 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 G+I+ + E ++ ++ + FD++ AR++ Sbjct: 122 GRIVQVELDAGRIVFE------VDGAELTVDFDNIDKARILPD 158 >gi|310823423|ref|YP_003955781.1| hypothetical protein STAUR_6197 [Stigmatella aurantiaca DW4/3-1] gi|309396495|gb|ADO73954.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1] Length = 161 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 76/160 (47%), Gaps = 10/160 (6%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAI 76 + ++++P++ + + + E+ +L++F+++ G + L +C ++S+A+ Sbjct: 7 KQTVEERAMTLLEPIVAGEGLELIDLEFVREREGWVLRLFIDKPGGRVGLDECSQVSRAV 66 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD--KQKLIGK 134 P LDVE+++ Y LEVSSPG++RP+ + S + R G V + GD ++ G Sbjct: 67 DPALDVEDLVPNEYNLEVSSPGVNRPLKKLSHYERVKGQKVKVKTFGPIGDPPRKNFSGT 126 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + G +E E G I + A L Sbjct: 127 LTEVTAEGIAVEVEGAGA-------FRIPLKDIAKANLEF 159 >gi|56963997|ref|YP_175728.1| hypothetical protein ABC2232 [Bacillus clausii KSM-K16] gi|81365999|sp|Q5WFT8|RIMP_BACSK RecName: Full=Ribosome maturation factor rimP gi|56910240|dbj|BAD64767.1| conserved hypothetical protein [Bacillus clausii KSM-K16] Length = 156 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 75/157 (47%), Gaps = 6/157 (3%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQA 75 ++ + + +P++ E+ V++ +E L++F++ D + L DCE +S+ Sbjct: 1 MSKNVSRTVEQLAEPIVRELHLELVEVEYKKEGPNWYLRVFID-ADRGVNLDDCEAVSEK 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LD + I+ Y LEVSSPG +RP+ +++D + G V ++ G + Sbjct: 60 LSEVLDEVDPIKEAYFLEVSSPGAERPLKKEADVKKAVGKGVYVTTYEPIDGQKAFEGVL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + +E G+ + + + + +ARL Sbjct: 120 VSFEDATLVIE----GKNKTRTVTYTVPYAKVANARL 152 >gi|298369369|ref|ZP_06980687.1| hypothetical protein HMPREF9016_01039 [Neisseria sp. oral taxon 014 str. F0314] gi|298283372|gb|EFI24859.1| hypothetical protein HMPREF9016_01039 [Neisseria sp. oral taxon 014 str. F0314] Length = 157 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 40/149 (26%), Positives = 77/149 (51%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI +++ + + + V L + + L+IF+++ +G +T+ DC +S +S + VE Sbjct: 16 DIQNILDKTLPGLGYELVDFELTAQGD--LRIFIDK-EGGITVEDCATVSNHLSRVFTVE 72 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +I + RLE+SSPG+DRP+ + +DF+R+ G + L ++ IG+I Sbjct: 73 DI--DYKRLEISSPGLDRPLKKAADFVRFAGRQAKIKTRLPIDGQKNFIGRIENCKNGTV 130 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + + I FD++ ARL Sbjct: 131 SISFDGKS--------VDIEFDNIDKARL 151 >gi|289548940|ref|YP_003473928.1| hypothetical protein Thal_1169 [Thermocrinis albus DSM 14484] gi|289182557|gb|ADC89801.1| protein of unknown function DUF150 [Thermocrinis albus DSM 14484] Length = 157 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 40/161 (24%), Positives = 85/161 (52%), Gaps = 7/161 (4%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 + + + ++ P++++M +R + E+ +L+I +++ +G +T+ DCEE+S+ Sbjct: 3 INEKAIVERVKELVTPLVKKMGYRLFDVEFKPERGWVLRIILDK-EGGITIGDCEEVSRK 61 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+II Y LEVSSPG++R + + F + G +V + ++++ G I Sbjct: 62 VSALLDVEDIIPFSYMLEVSSPGLNRELTKPEHFEFFEGRLVRVILRQPVEGRREIKGYI 121 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 G +E LE++ + + + + A L + + Sbjct: 122 RGVTEGVLKLEEKD------SRNILHVPLSHVARANLEMEE 156 >gi|219870468|ref|YP_002474843.1| hypothetical protein HAPS_0200 [Haemophilus parasuis SH0165] gi|219690672|gb|ACL31895.1| conserved hypothetical protein [Haemophilus parasuis SH0165] Length = 135 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 72/140 (51%), Gaps = 10/140 (7%) Query: 36 MSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEV 94 M F V + L +++++++ +G +T+ DC ++S+ +S I DVE+ I Y LEV Sbjct: 1 MGFELVGVECQRAGRFLTVRLYIDK-EGGVTVDDCSDVSRQVSAIFDVEDPIADKYNLEV 59 Query: 95 SSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKD 154 SSPG+DRP+ + + R+ G + + + D++K G+++ L+ + + Sbjct: 60 SSPGLDRPLFTLAHYQRFVGREIVVHLRIPMLDRRKWQGELVSVEGDLITLKVDGNLQ-- 117 Query: 155 MNELQIAISFDSLLSARLIV 174 A +F ++ A LI Sbjct: 118 ------AFAFGNIQKANLIP 131 >gi|323701862|ref|ZP_08113532.1| protein of unknown function DUF150 [Desulfotomaculum nigrificans DSM 574] gi|323533166|gb|EGB23035.1| protein of unknown function DUF150 [Desulfotomaculum nigrificans DSM 574] Length = 153 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 45/160 (28%), Positives = 81/160 (50%), Gaps = 10/160 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 + +++ I+P++EE V + ++ N L++F+++ G + L DC+ LS+ Sbjct: 1 MAKNSVVEKVTAAIEPIVEESKLELVNVEYVKEGGNWYLRVFIDKP-GGVDLDDCQMLSE 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 + +LD + I Y LEVSSPGI+RP+ + DF R+ GH+V + GK Sbjct: 60 KLDKLLDELDPIPQAYFLEVSSPGIERPLKKPEDFERFMGHLVNITTYTPIDGAKSFTGK 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + G +E G +E + + + I D + ++RL V Sbjct: 120 LQGYTEAGIEIEVKGK--------PMLIPHDRVATSRLAV 151 >gi|304404289|ref|ZP_07385951.1| protein of unknown function DUF150 [Paenibacillus curdlanolyticus YK9] gi|304347267|gb|EFM13099.1| protein of unknown function DUF150 [Paenibacillus curdlanolyticus YK9] Length = 153 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 70/154 (45%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + +++P I+E F V + ++ N L+IFV++ +G + + +C +S+ +S Sbjct: 6 IKSTVEEMVKPFIDENGFELVDVEYVKEGSNWFLRIFVDK-EGGIDIDECGRVSEYLSEQ 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD ++ I Y LEVSSPG +RP+ + D + G V +++ G + + Sbjct: 65 LDQKDPITDAYFLEVSSPGAERPLKKPEDVHKAVGKHVYMTTYEPVHGQKEFEGLLQSFN 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + I + + SARL Sbjct: 125 GEVVSIR--------EGQRNFEIPYAKIASARLA 150 >gi|259585704|sp|B7GG79|RIMP_ANOFW RecName: Full=Ribosome maturation factor rimP Length = 156 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 6/157 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + + ++ P++ M V I ++ KN L++F++ + + C +S+ +S Sbjct: 2 KKVTHIVEELVTPIVTHMGLELVDIEYVKEGKNWFLRVFIDSP-TGIDIDQCGVVSEQLS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + I +Y LEVSSPG +RP+ + DF R G V + +++ G + Sbjct: 61 EKLDEIDPIPHNYFLEVSSPGAERPLKKARDFERAVGKNVYVKTYEPIDGQKEFEGLLTA 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + + +K + ++ + SARL V Sbjct: 121 FDGQTVTVEVKVKTKKKTITI----PYEKVASARLAV 153 >gi|184155205|ref|YP_001843545.1| hypothetical protein LAF_0729 [Lactobacillus fermentum IFO 3956] gi|227514705|ref|ZP_03944754.1| protein of hypothetical function DUF150 [Lactobacillus fermentum ATCC 14931] gi|260662295|ref|ZP_05863191.1| UPF0090 protein [Lactobacillus fermentum 28-3-CHN] gi|259585802|sp|B2GBN3|RIMP_LACF3 RecName: Full=Ribosome maturation factor rimP gi|183226549|dbj|BAG27065.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956] gi|227086909|gb|EEI22221.1| protein of hypothetical function DUF150 [Lactobacillus fermentum ATCC 14931] gi|260553678|gb|EEX26570.1| UPF0090 protein [Lactobacillus fermentum 28-3-CHN] Length = 159 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 78/161 (48%), Gaps = 8/161 (4%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++++++P++ E +F ++ ++E K+ L++++++ +G +TL DC +S Sbjct: 1 MSNKTVVETVTALVEPILAEHNFELYEVEFVQEAKSWYLRVYIDK-EGGITLEDCALVSD 59 Query: 75 AISPILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 +S LD + I Y LEVSSPG +RP+ ++ D+ R V + + Sbjct: 60 QLSEQLDSADPDPIPQAYFLEVSSPGAERPLKKEVDYQRALDQYVNVSLYQQIDGHKVFE 119 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 G + S +E + + Q+ I D + ARL Sbjct: 120 GYLRQLSPDELTIEYMDK----TRQKQVVIPRDKVAKARLA 156 >gi|315497223|ref|YP_004086027.1| hypothetical protein Astex_0175 [Asticcacaulis excentricus CB 48] gi|315415235|gb|ADU11876.1| protein of unknown function DUF150 [Asticcacaulis excentricus CB 48] Length = 222 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 53/182 (29%), Positives = 86/182 (47%), Gaps = 17/182 (9%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLE----EKNLLLQIFVERD-DGNMTLRDC 69 + + P+ E + V++ L+ LQI ER DG++T+ C Sbjct: 1 MRAKTTEDRKLIEAFDPIAEALGLDIVRVRLMGSNKPGGPRRLQIMAERKTDGDITVNQC 60 Query: 70 EELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ 129 LS+A+S L+ + I G Y LEVSSPGIDRP+ R DF ++G E+ + ++ Sbjct: 61 ARLSRALSAWLEESDPIVGEYILEVSSPGIDRPLTRLKDFDTYSGLEARLELDRLAEGRK 120 Query: 130 KLIGKIMGTSETG-FFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELL-----RASL 183 + G + GT + ++ E E I FD ++ A+L++ DELL +A+L Sbjct: 121 RFRGILTGTEDGEYVAIDLEG------EEDTAMIPFDWIIDAKLVLNDELLKIGAEKAAL 174 Query: 184 NN 185 Sbjct: 175 RR 176 >gi|157962880|ref|YP_001502914.1| hypothetical protein Spea_3062 [Shewanella pealeana ATCC 700345] gi|189039813|sp|A8H742|RIMP_SHEPA RecName: Full=Ribosome maturation factor rimP gi|157847880|gb|ABV88379.1| protein of unknown function DUF150 [Shewanella pealeana ATCC 700345] Length = 151 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 73/154 (47%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + +++ +E + + + + K+ +L+++++ + + + DC E S+ +S + Sbjct: 4 LERKLVEMLKAPVEALGHKLWGLEYIQAGKHSILRLYIDN-EKGIFIEDCAEASRQVSAV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +DVE+ I Y LEVSSPG+DRP+ + + G V ++ + + L G + G Sbjct: 63 MDVEDPISTEYTLEVSSPGVDRPLFTAEQYQAYIGETVKVQLTMPVAGSRNLKGTVTGVD 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + ++ ++ D++ LI Sbjct: 123 GQMLNLSVDG--------NELIVALDNIRKGNLI 148 >gi|228474945|ref|ZP_04059673.1| conserved hypothetical protein [Staphylococcus hominis SK119] gi|314936574|ref|ZP_07843921.1| conserved hypothetical protein [Staphylococcus hominis subsp. hominis C80] gi|228270930|gb|EEK12318.1| conserved hypothetical protein [Staphylococcus hominis SK119] gi|313655193|gb|EFS18938.1| conserved hypothetical protein [Staphylococcus hominis subsp. hominis C80] Length = 155 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 76/154 (49%), Gaps = 6/154 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + ++ ++I P++++++F V + + K+ L+I +++ +G + L DC S+ IS Sbjct: 2 SKITEEVETIITPILDDLNFELVDVEYAKEGKDRFLRISIDK-EGGVDLNDCTLASEKIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +D + I Y L+V+SPG +RP+ ++ D+ V + ++ +G + Sbjct: 61 EAMDQNDPIPEMYYLDVASPGAERPLKKEKDYQNAIEQPVFVSLYAPIEGDKEWLGILKS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 + +E +++ +K I I + + AR Sbjct: 121 VDDDTITMEVKEKSKKK----TIEIPRNKIAKAR 150 >gi|306842730|ref|ZP_07475372.1| Protein of unknown function DUF150 [Brucella sp. BO2] gi|306287074|gb|EFM58579.1| Protein of unknown function DUF150 [Brucella sp. BO2] Length = 158 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 56/133 (42%), Positives = 82/133 (61%), Gaps = 2/133 (1%) Query: 56 FVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGH 115 ER DG MT+ DCE +S+ ++P+LDVE+ I G Y LE+SSPGIDRP+VRKSDF W GH Sbjct: 1 MAERPDGTMTVDDCELVSRTVAPVLDVEDPISGKYHLEISSPGIDRPLVRKSDFSDWAGH 60 Query: 116 VVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + E + ++KL G+I+ +E ++ NE + I FD + ARL++T Sbjct: 61 IAKVETSIVHEGRKKLRGRIVVGDADSVTIESDQISY--GNEPVVRIPFDLISDARLVLT 118 Query: 176 DELLRASLNNYGS 188 D+L+R +L + Sbjct: 119 DDLIRDALRKDKA 131 >gi|158523047|ref|YP_001530917.1| hypothetical protein Dole_3037 [Desulfococcus oleovorans Hxd3] gi|158511873|gb|ABW68840.1| protein of unknown function DUF150 [Desulfococcus oleovorans Hxd3] Length = 181 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 77/171 (45%), Gaps = 12/171 (7%) Query: 10 KYEPRIFGDMG-LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVER--DDGNMT 65 PR+ G + + +++PV V + +E +L++++ D +T Sbjct: 15 PATPRLMGGGNPVVAQMWKLVEPVCSAEGMELVFVEFNKESQGRVLRLYLASGVPDRGVT 74 Query: 66 LRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS 125 L DC +S+ ++ +LDV +Y LEVSS G++RP+ ++ DF R+ G V Sbjct: 75 LEDCAGISRQVNGLLDVYLPELDNYTLEVSSAGLERPLAKEIDFERFAGSRVKIRTAAPV 134 Query: 126 GDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 D++ G ++G S+ L + + I + + A+L+ D Sbjct: 135 SDRKNFTGILLGVSDGNVRLMVDDK--------TFVIPYGEITRAKLVNED 177 >gi|195953995|ref|YP_002122285.1| protein of unknown function DUF150 [Hydrogenobaculum sp. Y04AAS1] gi|226736378|sp|B4U6H1|RIMP_HYDS0 RecName: Full=Ribosome maturation factor rimP gi|195933607|gb|ACG58307.1| protein of unknown function DUF150 [Hydrogenobaculum sp. Y04AAS1] Length = 154 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 9/156 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 +A + +++P+ + + FR + E +L+I +++ +G +T+ DCEELS+ +S Sbjct: 5 KKIATTVKDLVKPISDNLGFRLFDVEFKPENGWVLRIIIDK-EGGVTIDDCEELSKRVSA 63 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LDVE++I Y LEVSSPG+ R + K + + G + +KQ+ G I Sbjct: 64 LLDVEDVITSSYFLEVSSPGLTRELKEKWHYEFFKGKYARLYLKEKIDNKQEYAGYIDSV 123 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + L + + I FD + ARL V Sbjct: 124 EDDTLVLRLLDK--------TLKIPFDKIAKARLDV 151 >gi|219669698|ref|YP_002460133.1| hypothetical protein Dhaf_3680 [Desulfitobacterium hafniense DCB-2] gi|254800077|sp|B8FR10|RIMP_DESHD RecName: Full=Ribosome maturation factor rimP gi|219539958|gb|ACL21697.1| protein of unknown function DUF150 [Desulfitobacterium hafniense DCB-2] Length = 152 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 10/157 (6%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQA 75 + + ++I PVI E V + ++ + L+I++++ +G + + DC +S Sbjct: 1 MGESIMEQVEAIIAPVITEQGLELVDVEYVKEGAHWYLRIYIDK-EGGVDIDDCTNVSHL 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LD + I Y LEVSSPG++RP+ + DF R+ G +V ++ G + Sbjct: 60 VSEVLDKHDPIAQAYMLEVSSPGLERPLKKDEDFERFTGKLVRVLTKEVYQGYKEFTGYL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +G E LE EK ++AI + A L Sbjct: 120 VGLIEDDIVLEYEKE--------RMAIPRAIVDKANL 148 >gi|78066109|ref|YP_368878.1| hypothetical protein Bcep18194_A4639 [Burkholderia sp. 383] gi|91208362|sp|Q39H32|RIMP_BURS3 RecName: Full=Ribosome maturation factor rimP gi|77966854|gb|ABB08234.1| protein of unknown function DUF150 [Burkholderia sp. 383] Length = 152 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 75/154 (48%), Gaps = 8/154 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I+ + + + V + +L I++++ ++L DCE++++ + +L VE Sbjct: 2 QLTELIETTVTGLGYELVDLERTGRG--MLCIYIDQP-AGISLEDCEKVTRQLQHVLTVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DRP+ + +DF R+ G V+ + ++ G + + Sbjct: 59 NI--DYERLEVSSPGLDRPLKKLADFERFAGSEVSVTLKKPLDGRKTYRGILHAPNGETI 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 LE E K + + + ARLI + Sbjct: 117 GLEFEG---KKGEAAMLDFTLADIDKARLIPQVD 147 >gi|330963973|gb|EGH64233.1| ribosome maturation protein RimP [Pseudomonas syringae pv. actinidiae str. M302091] Length = 152 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 76/156 (48%), Gaps = 10/156 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + ++ PV+ + ++ I K+ +L+I++++ +G + + DC +S+ IS +LD Sbjct: 6 EQLQGLLAPVVVALGYQCWGIDFSSQGKHSVLRIYIDK-EGGVLVDDCAIVSRQISGVLD 64 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ I Y LEVSSPG++RP+ F + G V ++ ++ G + G Sbjct: 65 VEDPISTEYTLEVSSPGMERPLFTIEQFASYAGEQVRIKLRSPFEGRRNFQGLLRGV--- 121 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 +E+ + + + + D + A +I T + Sbjct: 122 -----EEQDVVVQVEDHEFLLPIDLIDKADIIPTFD 152 >gi|153004005|ref|YP_001378330.1| hypothetical protein Anae109_1138 [Anaeromyxobacter sp. Fw109-5] gi|259585695|sp|A7H9F0|RIMP_ANADF RecName: Full=Ribosome maturation factor rimP gi|152027578|gb|ABS25346.1| protein of unknown function DUF150 [Anaeromyxobacter sp. Fw109-5] Length = 171 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 43/179 (24%), Positives = 79/179 (44%), Gaps = 20/179 (11%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + +A V++PV+ + V++ L + L++FV++ G + + DC+ +S+ Sbjct: 4 IAEESIAERTRRVLEPVLARDGYELVEVEWLRQGSRWTLRLFVDKP-GGVGIEDCQAVSR 62 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD------- 127 + PILDVE+ IE Y LEVSSPG+DRP+ + +DF R+ G + Sbjct: 63 LVDPILDVEDFIEPAYDLEVSSPGLDRPLRKPADFDRYAGQRAHVKAYGPVAGTAPGSPA 122 Query: 128 KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNY 186 ++ G ++G + ++ + + D + A L A L Sbjct: 123 RKNWTGVLVGYRDGAVEIDVDGVVH--------RVPHDQIAKAHLEYD---FEADLRRK 170 >gi|114331634|ref|YP_747856.1| hypothetical protein Neut_1648 [Nitrosomonas eutropha C91] gi|114308648|gb|ABI59891.1| protein of unknown function DUF150 [Nitrosomonas eutropha C91] Length = 160 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 43/150 (28%), Positives = 77/150 (51%), Gaps = 11/150 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + +++P I M + V I LL++FV++ DG +TL DC +S + +L VEN Sbjct: 20 LFELLEPTIAGMGYELVDIEQSAPGR-LLRVFVDKKDGAITLADCVAVSNHLGQLLAVEN 78 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I + RLEVSSPG+DRP+ +++DF+R+ G + + ++ ++ +G + + Sbjct: 79 I--DYNRLEVSSPGLDRPLKKRADFVRFVGESIRIRLRIALQGQRNFVGTLTEVGDDALM 136 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L + + + +L ARLI Sbjct: 137 LNVDGKL--------LQFELKNLEKARLIP 158 >gi|91792365|ref|YP_562016.1| hypothetical protein Sden_1005 [Shewanella denitrificans OS217] gi|123166362|sp|Q12QI3|RIMP_SHEDO RecName: Full=Ribosome maturation factor rimP gi|91714367|gb|ABE54293.1| protein of unknown function DUF150 [Shewanella denitrificans OS217] Length = 151 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 71/154 (46%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + ++ +E + F I + ++ ++++F++ + + + DC E S+ +S + Sbjct: 4 IESRLVEMLTVPVEALGFELWGIEFVHAGRHSIVRVFIDS-EKGIFIEDCAETSRQVSAV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ + + + G ++ + + L G I Sbjct: 63 LDVEDPITTEYTLEVSSPGVDRPLFTAAQYQAYIGEDAKVQLTMPVAGSRNLKGVISKVE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + + + I+ D++ +I Sbjct: 123 GQILTLNVDGKD--------LIIALDNIRKGNII 148 >gi|261400894|ref|ZP_05987019.1| hypothetical protein NEILACOT_04263 [Neisseria lactamica ATCC 23970] gi|269209253|gb|EEZ75708.1| hypothetical protein NEILACOT_04263 [Neisseria lactamica ATCC 23970] Length = 143 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 76/149 (51%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++++ + + + V L + L++F+++ +G +T+ DC +S +S + VE Sbjct: 2 DIQTILEKTLPGLGYELVDFELTAQG--TLRVFIDK-EGGITVEDCAAVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +I + LE+SSPG+DRP+ + +DF+R+ G + L ++ IGKI G Sbjct: 59 DI--DYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIDGQKNFIGKIEGCENDTV 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + + I D++ ARL Sbjct: 117 TVSFDGK--------TVQIGLDNIDKARL 137 >gi|293390260|ref|ZP_06634594.1| protein YhbC [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950794|gb|EFE00913.1| protein YhbC [Aggregatibacter actinomycetemcomitans D7S-1] Length = 151 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 82/154 (53%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + ++Q +E++ + I + L +++F+++ +G +T+ DC ++S+ +S + Sbjct: 4 LEQKLQDLLQGSVEDLGCQLWGIECQRVGRYLTVRLFIDK-EGGVTVEDCADVSRQVSAV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ + R+ G + + + D++K G+++ Sbjct: 63 LDVEDPIADKYNLEVSSPGLDRPLFTLAQCARYVGQEILVHLRIPVADRRKWQGELVKIE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L +K+ + ++FD++ A ++ Sbjct: 123 NDMITLIVDKQEQI--------LAFDNIQKASVV 148 >gi|268686951|ref|ZP_06153813.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|268627235|gb|EEZ59635.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] Length = 149 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 40/149 (26%), Positives = 77/149 (51%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++++ + + + V L + L++F+++ +G +T+ DC +S +S + VE Sbjct: 8 DIQTILEKTLPGLGYELVDFELTAQG--TLRVFIDK-EGGITVEDCATVSNHLSRVFMVE 64 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +I G+ LE+SSPG+DRP+ + +DF+R+ G + L G ++ IGKI G Sbjct: 65 DI--GYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIGGQKNFIGKIEGCENDTV 122 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + + I ++ ARL Sbjct: 123 TVSFDGK--------TVQIELGNIDKARL 143 >gi|56460078|ref|YP_155359.1| alpha-hemolysin-like HlyA family protein [Idiomarina loihiensis L2TR] gi|81362146|sp|Q5QTY6|RIMP_IDILO RecName: Full=Ribosome maturation factor rimP gi|56179088|gb|AAV81810.1| Alpha-hemolysin-like protein, hlyA family [Idiomarina loihiensis L2TR] Length = 152 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 75/159 (47%), Gaps = 10/159 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 L ++ +I+P +E + F + + K L+++++ + +++ +C ++S +S Sbjct: 3 NLQERLTDIIRPAVEALEFELWGVEFIRAGKFSTLRVYIDHPE-GISVDNCADVSYQVSS 61 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LDVE+ I Y LEVSSPG++RP + VA E+V + +K+K +++ Sbjct: 62 LLDVEDPINVEYNLEVSSPGMERPFFNAQQMQPYINETVAFELVAAQKNKRKFKAELIAV 121 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 L + + ++ + +A L+ + Sbjct: 122 EGEELTLAVDND--------TLQVNMRDVKNAHLVPAFD 152 >gi|113868283|ref|YP_726772.1| hypothetical protein H16_A2308 [Ralstonia eutropha H16] gi|123032887|sp|Q0K9B7|RIMP_RALEH RecName: Full=Ribosome maturation factor rimP gi|113527059|emb|CAJ93404.1| conserved hypothetical protein [Ralstonia eutropha H16] Length = 162 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 74/151 (49%), Gaps = 4/151 (2%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I+ + M + V++ LL++++++ + + + DCE++S+ ++ + VE Sbjct: 2 HLADLIETTLSGMGYELVELERAPAG--LLRVYIDQPETGIAIEDCEKVSRQLTHVFTVE 59 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 N+ + RLEVSSPG+DRP+ + +D++R+ G + L ++ G + + Sbjct: 60 NV--DYERLEVSSPGLDRPLKKLADYVRFAGEEARVTLRLPVNGQKNFTGILREPTGAAG 117 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + + + ARL+ Sbjct: 118 EEKIGLEFEGKDGPALLEFAVSDVDKARLVP 148 >gi|161870485|ref|YP_001599657.1| hypothetical protein NMCC_1541 [Neisseria meningitidis 053442] gi|259585798|sp|A9M1D3|RIMP_NEIM0 RecName: Full=Ribosome maturation factor rimP gi|161596038|gb|ABX73698.1| conserved hypothetical protein [Neisseria meningitidis 053442] Length = 143 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 76/149 (51%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++++ + + + V L + L++F+++ +G +T+ DC +S +S + VE Sbjct: 2 DIQTILEKTLPGLGYELVDFELTAQG--TLRVFIDK-EGGITVEDCATVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +I + LE+SSPG+DRP+ + +DF+R+ G + L ++ IGKI G Sbjct: 59 DI--DYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIDGQKNFIGKIEGCENDTV 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + + I D++ ARL Sbjct: 117 TISFDGK--------TVQIGLDNIDKARL 137 >gi|73541718|ref|YP_296238.1| hypothetical protein Reut_A2030 [Ralstonia eutropha JMP134] gi|91208397|sp|Q46ZN9|RIMP_RALEJ RecName: Full=Ribosome maturation factor rimP gi|72119131|gb|AAZ61394.1| Protein of unknown function DUF150 [Ralstonia eutropha JMP134] Length = 162 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 75/151 (49%), Gaps = 4/151 (2%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I+ + M + V++ LL++++++ + + + DCE++S+ ++ +L VE Sbjct: 2 HLADLIETTLNGMGYELVELERAPAG--LLRVYIDQPETGIVIEDCEKVSRQLTHVLTVE 59 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 N+ + RLEVSSPG+DRP+ + +D++R+ G + L ++ G + + Sbjct: 60 NV--DYERLEVSSPGLDRPLKKLADYVRFAGAEARVTLRLPVNGQKNFTGILREPTGEAG 117 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + + + ARL+ Sbjct: 118 AEKVGLEFEGKDGPALLEFTVSDVDKARLVP 148 >gi|261392136|emb|CAX49636.1| conserved hypothetical protein [Neisseria meningitidis 8013] Length = 149 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 75/149 (50%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++++ + + + V L + L++F+++ +G +T+ DC +S +S + VE Sbjct: 8 DIQTILEKTLPGLGYELVDFELTAQG--TLRVFIDK-EGGITVEDCATVSNHLSRVFMVE 64 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +I + LE+SSPG+DRP+ + +DF+R+ G + L ++ IGKI G Sbjct: 65 DI--DYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIDGQKNFIGKIEGCENDTV 122 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + + I ++ ARL Sbjct: 123 TVSFDGK--------TVQIELGNIDKARL 143 >gi|15677490|ref|NP_274646.1| hypothetical protein NMB1641 [Neisseria meningitidis MC58] gi|218768663|ref|YP_002343175.1| hypothetical protein NMA1895 [Neisseria meningitidis Z2491] gi|304386890|ref|ZP_07369152.1| protein of hypothetical function DUF150 [Neisseria meningitidis ATCC 13091] gi|54040272|sp|P67217|RIMP_NEIMB RecName: Full=Ribosome maturation factor rimP gi|54042665|sp|P67216|RIMP_NEIMA RecName: Full=Ribosome maturation factor rimP gi|7226891|gb|AAF41990.1| conserved hypothetical protein [Neisseria meningitidis MC58] gi|121052671|emb|CAM09012.1| conserved hypothetical protein [Neisseria meningitidis Z2491] gi|304339049|gb|EFM05141.1| protein of hypothetical function DUF150 [Neisseria meningitidis ATCC 13091] Length = 149 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 74/149 (49%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++++ + + + V L + L++F+++ + +T+ DC +S +S + VE Sbjct: 8 DIQTILEKTLPGLGYELVDFELTAQG--TLRVFIDK-ESGITVEDCATVSNHLSRVFMVE 64 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +I + LE+SSPG+DRP+ + +DF+R+ G + L ++ IGKI G Sbjct: 65 DI--DYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIDGQKNFIGKIEGCENDTV 122 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + + I ++ ARL Sbjct: 123 TVSFDGK--------TVQIELGNIDKARL 143 >gi|329120393|ref|ZP_08249060.1| protein of hypothetical function DUF150 [Neisseria bacilliformis ATCC BAA-1200] gi|327462348|gb|EGF08674.1| protein of hypothetical function DUF150 [Neisseria bacilliformis ATCC BAA-1200] Length = 192 Score = 122 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 77/159 (48%), Gaps = 15/159 (9%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELS 73 IF + + I ++++ + + V L + L++F+++ +G +T+ DC +S Sbjct: 43 FIFYESKMD--IQNLLEKTLPGLGCELVDHELTAQG--TLRVFIDK-EGGITIDDCAAVS 97 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 +S + VE++ + LE+SSPG+DRP+ + +DF R+ G + L ++ IG Sbjct: 98 NHLSRLFTVEDV--DYKNLEISSPGLDRPLKKAADFARFAGQEAKIKTRLPVDGQKNFIG 155 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +I L + + A++ D++ ARL Sbjct: 156 RIESCDGQTVVLSFDGK--------TAALALDNIDKARL 186 >gi|260914258|ref|ZP_05920731.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325] gi|260631891|gb|EEX50069.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325] Length = 162 Score = 122 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 75/155 (48%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + ++Q +E++ I L +++++++ +G +T+ DC ++S+ +S I Sbjct: 15 LEQKLHELLQSTVEDLGCELWGIECQRSGRFLTVRLYIDK-EGGVTVDDCADVSRQVSAI 73 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DR + + + R+ G + + + D++K GK+ Sbjct: 74 LDVEDPIADKYNLEVSSPGLDRALFTLAQYQRYIGQDIVVHLRIPVLDRRKWQGKLEKIE 133 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L + + + F ++ A +I Sbjct: 134 NDMLTLTVDG--------QEQVLVFGNIQKANIIP 160 >gi|242373556|ref|ZP_04819130.1| protein of hypothetical function DUF150 [Staphylococcus epidermidis M23864:W1] gi|242348919|gb|EES40521.1| protein of hypothetical function DUF150 [Staphylococcus epidermidis M23864:W1] Length = 178 Score = 122 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 77/154 (50%), Gaps = 6/154 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + + S+IQP+++++ F V+I ++ K+ L+I +++ +G + L DC S+ IS Sbjct: 25 SKVTEQVESIIQPILDDLKFELVEIEYVKEGKDRFLRISIDK-EGGVDLNDCTLASEKIS 83 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +D + I Y L+V+SPG +RP+ + DF V + +++ +G + Sbjct: 84 EAMDENDPIPEMYYLDVASPGAERPIKKDKDFHNAVTQPVFISLYAPIEGEKEWLGILQS 143 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 + +E +++ + QI I + + AR Sbjct: 144 VDDDNIVMEVKEKSKTK----QIEIPRNKIAKAR 173 >gi|313667983|ref|YP_004048267.1| hypothetical protein NLA_6440 [Neisseria lactamica ST-640] gi|309378388|emb|CBX22989.1| unnamed protein product [Neisseria lactamica Y92-1009] gi|313005445|emb|CBN86880.1| conserved hypothetical protein [Neisseria lactamica 020-06] Length = 143 Score = 122 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 76/149 (51%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++++ + + + V L + L++F+++ +G +T+ DC +S +S + VE Sbjct: 2 DIQTILEKTLPGLGYELVDFELTAQG--TLRVFIDK-EGGITVEDCAAVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +I + LE+SSPG+DRP+ + +DF+R+ G + L ++ IGKI G Sbjct: 59 DI--DYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIDGQKNFIGKIEGCENDTV 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + + I D++ ARL Sbjct: 117 TVSFDGK--------TVQIGLDNIDKARL 137 >gi|296315230|ref|ZP_06865171.1| hypothetical protein NEIPOLOT_02434 [Neisseria polysaccharea ATCC 43768] gi|296837868|gb|EFH21806.1| hypothetical protein NEIPOLOT_02434 [Neisseria polysaccharea ATCC 43768] Length = 143 Score = 122 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 76/149 (51%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++++ + + + V L + L++F+++ +G +T+ DC +S +S + VE Sbjct: 2 DIQTILEKTLPGLGYELVDFELTAQG--TLRVFIDK-EGGITVEDCAAVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +I + LE+SSPG+DRP+ + +DF+R+ G + L ++ IGKI G Sbjct: 59 DI--DYKNLEISSPGLDRPLKKAADFVRFAGQQAKIKTRLPIDGQKNFIGKIEGCENDTV 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + + I D++ ARL Sbjct: 117 TVSFDGK--------TVQIGLDNIDKARL 137 >gi|190575264|ref|YP_001973109.1| hypothetical protein Smlt3391 [Stenotrophomonas maltophilia K279a] gi|226703805|sp|B2FN92|RIMP_STRMK RecName: Full=Ribosome maturation factor rimP gi|190013186|emb|CAQ46819.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a] Length = 196 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 41/163 (25%), Positives = 82/163 (50%), Gaps = 12/163 (7%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVE-----RDDGNMTLRDCEEL 72 A DI++++ P + + + + L L+++++ + + + + DCE + Sbjct: 2 SDKATDIANLLAPTVVSLGLELLGVEYLPAPGGATLRLYIDVPLAEQPERIINVDDCERV 61 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+ +S LDVE+ I G+Y LEVSSPG+DRP+ F R G + L ++++L Sbjct: 62 SREVSAQLDVEDPISGNYTLEVSSPGVDRPLFNLEQFARHQGESAKVTLKLPQDNRRRLQ 121 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 G+I T E + +++ ++ +S D++ AR++ Sbjct: 122 GRIEATDEAAGTITF------IVDKTEVVVSADNIDKARIMPD 158 >gi|21231946|ref|NP_637863.1| hypothetical protein XCC2513 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|188991043|ref|YP_001903053.1| hypothetical protein xccb100_1647 [Xanthomonas campestris pv. campestris str. B100] gi|34223123|sp|Q8P7U5|RIMP_XANCP RecName: Full=Ribosome maturation factor rimP gi|226736393|sp|B0RRB2|RIMP_XANCB RecName: Full=Ribosome maturation factor rimP gi|21113675|gb|AAM41787.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|167732803|emb|CAP50997.1| YhbC family protein [Xanthomonas campestris pv. campestris] Length = 196 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 79/160 (49%), Gaps = 12/160 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVE-----RDDGNMTLRDCEELSQA 75 A +I++++ P +E + + + L L+++++ + D + + DCE +S+ Sbjct: 5 ATEIANLLGPTVESLGLELLGVEYLPAPGGATLRLYIDVPLAEQPDRIINVDDCERVSRE 64 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LDVE+ I G+Y LEVSSPG+DRP+ F R G + L+ +++ G+I Sbjct: 65 VSAQLDVEDPISGNYTLEVSSPGVDRPLFTLDQFARHVGESAKIVLKLAQDGRRRFQGQI 124 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + + ++ + I FD++ AR++ Sbjct: 125 VRIDTEAAAVVF------SVDGKDVQIGFDNIDKARILPD 158 >gi|83748668|ref|ZP_00945685.1| Hypothetical cytosolic protein [Ralstonia solanacearum UW551] gi|207743365|ref|YP_002259757.1| hypothetical protein RSIPO_01539 [Ralstonia solanacearum IPO1609] gi|83724630|gb|EAP71791.1| Hypothetical cytosolic protein [Ralstonia solanacearum UW551] gi|206594762|emb|CAQ61689.1| conserved hypothetical protein [Ralstonia solanacearum IPO1609] Length = 162 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 72/151 (47%), Gaps = 4/151 (2%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I+ + M + V++ LL++++++ + + + DCE++S ++ + +VE Sbjct: 2 HLTDLIEKTLTAMGYELVEVERAPAG--LLRVYIDQAETGIVIEDCEKVSHQLTRVFEVE 59 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 N+ + RLEVSSPG+DRP+ +DF R+ G V + L ++ G + + Sbjct: 60 NV--HYERLEVSSPGLDRPLRTLTDFTRFAGQEVKVTLRLPVDGQKNFTGIVQAPTGEPG 117 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E + + L ARL+ Sbjct: 118 QERIGLEFEGKDGPALLEFTLSELDRARLVP 148 >gi|258591346|emb|CBE67645.1| conserved protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 153 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 45/153 (29%), Positives = 84/153 (54%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + ++ P+ E+ V + E +L++++++ D +TL DC+ +S+ +S + Sbjct: 5 VVERVRAIALPLFTELGLELVDVEFRREAGGWILRLYLDKPD-GVTLDDCQRVSEELSDL 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVENII Y LEVSSPG++RP++R+SDFLR+ G + + +++ +G + G Sbjct: 64 LDVENIIHHPYTLEVSSPGLNRPLLRESDFLRFAGQRARVTTLQAVAGQRRFLGVLRGCE 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + LE+E + I + ++ ARL Sbjct: 124 DGQVLLERED-------GTTVLIPYAAISKARL 149 >gi|59801638|ref|YP_208350.1| hypothetical protein NGO1284 [Neisseria gonorrhoeae FA 1090] gi|254494078|ref|ZP_05107249.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268595171|ref|ZP_06129338.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268597520|ref|ZP_06131687.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268599675|ref|ZP_06133842.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268604050|ref|ZP_06138217.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268682509|ref|ZP_06149371.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268684673|ref|ZP_06151535.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|293398727|ref|ZP_06642903.1| hypothetical protein NGNG_02048 [Neisseria gonorrhoeae F62] gi|75355764|sp|Q5F799|RIMP_NEIG1 RecName: Full=Ribosome maturation factor rimP gi|259585809|sp|B4RMZ1|RIMP_NEIG2 RecName: Full=Ribosome maturation factor rimP gi|59718533|gb|AAW89938.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090] gi|226513118|gb|EEH62463.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268548560|gb|EEZ43978.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268551308|gb|EEZ46327.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268583806|gb|EEZ48482.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268588181|gb|EEZ52857.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268622793|gb|EEZ55193.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268624957|gb|EEZ57357.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|291610867|gb|EFF39966.1| hypothetical protein NGNG_02048 [Neisseria gonorrhoeae F62] Length = 149 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 40/149 (26%), Positives = 77/149 (51%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++++ + + + V L + L++F+++ +G +T+ DC +S +S + VE Sbjct: 8 DIQTILEKTLPGLGYELVDFELAAQG--TLRVFIDK-EGGITVEDCATVSNHLSRVFMVE 64 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +I G+ LE+SSPG+DRP+ + +DF+R+ G + L G ++ IGKI G Sbjct: 65 DI--GYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIGGQKNFIGKIEGCENDTV 122 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + + I ++ ARL Sbjct: 123 TVSFDGK--------TVQIELGNIDKARL 143 >gi|289665187|ref|ZP_06486768.1| hypothetical protein XcampvN_19489 [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289667365|ref|ZP_06488440.1| hypothetical protein XcampmN_02313 [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 196 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 39/160 (24%), Positives = 79/160 (49%), Gaps = 12/160 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVE-----RDDGNMTLRDCEELSQA 75 A +I++++ P +E + + + L L+++++ + + + + DCE +S+ Sbjct: 5 ATEIANLLSPTVESLGLELLGVEYLPAPGGATLRLYIDVPLAEQPERVINVDDCERVSRE 64 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LDVE+ I G+Y LEVSSPG+DRP+ F R G + L+ +++ G+I Sbjct: 65 VSAQLDVEDPISGNYTLEVSSPGVDRPLFTLEQFARHAGESAKIVLKLAQDGRRRFQGEI 124 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + ++ ++ I FD++ AR++ Sbjct: 125 LRIDAEA------GAVVFAVDGKEVQIGFDNIDKARILPD 158 >gi|166712600|ref|ZP_02243807.1| hypothetical protein Xoryp_14385 [Xanthomonas oryzae pv. oryzicola BLS256] Length = 196 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 78/160 (48%), Gaps = 12/160 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVE-----RDDGNMTLRDCEELSQA 75 A +I++++ P ++ + + + L L+++++ + + + + DCE +S+ Sbjct: 5 ATEIANLLSPTVDSLGLELLGVEYLPAPGGATLRLYIDVPLAEQPERVINVDDCERVSRE 64 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LDVE+ I G+Y LEVSSPG+DRP+ F R G + L+ +++ G+I Sbjct: 65 VSAQLDVEDPISGNYTLEVSSPGVDRPLFTLEQFARHAGESAKIVLKLAQDGRRRFQGEI 124 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + ++ + I FD++ AR++ Sbjct: 125 LRIDAEA------GAVVFAVDGKDVQIGFDNIDKARILPD 158 >gi|15602626|ref|NP_245698.1| hypothetical protein PM0761 [Pasteurella multocida subsp. multocida str. Pm70] gi|12721059|gb|AAK02845.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 177 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 76/162 (46%), Gaps = 10/162 (6%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEEL 72 R L + ++Q +E++ I L +++++++ +G +T+ DC ++ Sbjct: 23 REVILATLEQKLQELLQSSVEDLGCELWGIECQRAGRYLTVRLYIDK-EGGVTVEDCADV 81 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+ +S ILDVE+ I Y LEVSSPG+DR + + R+ G + + + D++K Sbjct: 82 SRQVSAILDVEDPIADKYNLEVSSPGLDRALFTLDQYQRYIGQEIVVHLRIPVLDRRKWQ 141 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 GK+ L + + + + F ++ A +I Sbjct: 142 GKLEKIENDMLTLIVDGQEQILV--------FGNIQKANIIP 175 >gi|254252538|ref|ZP_04945856.1| hypothetical protein BDAG_01771 [Burkholderia dolosa AUO158] gi|124895147|gb|EAY69027.1| hypothetical protein BDAG_01771 [Burkholderia dolosa AUO158] Length = 152 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 75/154 (48%), Gaps = 8/154 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I+ + + + V + +L I++++ ++L DCE++++ + +L VE Sbjct: 2 QLTELIETTVTGLGYELVDLERTGRG--MLCIYIDQP-AGISLDDCEKVTRQLQHVLTVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DRP+ + +DF R+ G V+ + ++ G + + Sbjct: 59 NI--DYERLEVSSPGLDRPLKKLADFERFAGSEVSVTLKKPLDGRKTYRGILHAPNGETI 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 LE E K + + + ARLI + Sbjct: 117 GLEFE---RKKGEAAMLDFTLADIDKARLIPQVD 147 >gi|34223026|sp|Q9CMQ4|RIMP_PASMU RecName: Full=Ribosome maturation factor rimP Length = 151 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 75/155 (48%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + ++Q +E++ I L +++++++ +G +T+ DC ++S+ +S I Sbjct: 4 LEQKLQELLQSSVEDLGCELWGIECQRAGRYLTVRLYIDK-EGGVTVEDCADVSRQVSAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DR + + R+ G + + + D++K GK+ Sbjct: 63 LDVEDPIADKYNLEVSSPGLDRALFTLDQYQRYIGQEIVVHLRIPVLDRRKWQGKLEKIE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L + + + + F ++ A +I Sbjct: 123 NDMLTLIVDGQEQILV--------FGNIQKANIIP 149 >gi|308389760|gb|ADO32080.1| hypothetical protein NMBB_1873 [Neisseria meningitidis alpha710] gi|325134693|gb|EGC57332.1| hypothetical protein NMBM13399_0599 [Neisseria meningitidis M13399] gi|325198740|gb|ADY94196.1| conserved hypothetical protein [Neisseria meningitidis G2136] Length = 143 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 75/149 (50%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++++ + + + V L + L++F+++ +G +T+ DC +S +S + VE Sbjct: 2 DIQTILEKTLPGLGYELVDFELTAQG--TLRVFIDK-EGGITVEDCATVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +I + LE+SSPG+DRP+ + +DF+R+ G + L ++ IGKI G Sbjct: 59 DI--DYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIDGQKNFIGKIEGCENDTV 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + + I ++ ARL Sbjct: 117 TISFDGK--------TVQIELGNIDKARL 137 >gi|119470820|ref|ZP_01613431.1| hypothetical protein ATW7_05756 [Alteromonadales bacterium TW-7] gi|119446047|gb|EAW27326.1| hypothetical protein ATW7_05756 [Alteromonadales bacterium TW-7] Length = 151 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 L D+ +++ P +E + F + + ++ L++++ +D +++ +C + S+ IS Sbjct: 2 TKLEQDLVTMLTPAVEMLGFELHGLEFVQAGRHSTLRVYIAHED-GISVDNCADASRQIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ILDVE+ I Y LEVSSPG+DRP+ ++ + + G V L ++ G ++ Sbjct: 61 AILDVEDPITNEYDLEVSSPGVDRPLFKQDHYEQAQGEEVRVRTKLPQDGRRNFKGDLIA 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 S L + ++ I ++ A LI Sbjct: 121 VSSDMITLSSDG--------VEHLIMLSNIERANLI 148 >gi|311030089|ref|ZP_07708179.1| hypothetical protein Bm3-1_06021 [Bacillus sp. m3-13] Length = 156 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 74/159 (46%), Gaps = 6/159 (3%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQA 75 + + + P+++EM+ V I ++ + L++FV++ +G + + DC +S+ Sbjct: 1 MSKNVTETVEELALPIVKEMNVELVDIEYVKEGSSWFLRVFVDK-EGGIDIEDCGTVSEK 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LD + I +Y LEVSSPG +RP+ +K D + G V + + G + Sbjct: 60 LSEKLDELDPIPHNYFLEVSSPGAERPLKKKEDIEKSVGKYVNIKTYEPIDGLKSFEGDL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + L + K +++I + + ARL V Sbjct: 120 LDFDGETIKLSMTIKTRKK----EVSIPYPKVAKARLAV 154 >gi|254805396|ref|YP_003083617.1| hypothetical protein NMO_1459 [Neisseria meningitidis alpha14] gi|254668938|emb|CBA07181.1| conserved hypothetical protein [Neisseria meningitidis alpha14] gi|254669625|emb|CBA03670.1| conserved hypothetical protein [Neisseria meningitidis alpha153] gi|325201700|gb|ADY97154.1| conserved hypothetical protein [Neisseria meningitidis M01-240149] gi|325208564|gb|ADZ04016.1| conserved hypothetical protein [Neisseria meningitidis NZ-05/33] Length = 143 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 74/149 (49%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++++ + + + V L + L++F+++ + +T+ DC +S +S + VE Sbjct: 2 DIQTILEKTLPGLGYELVDFELTAQG--TLRVFIDK-ESGITVEDCATVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +I + LE+SSPG+DRP+ + +DF+R+ G + L ++ IGKI G Sbjct: 59 DI--DYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIDGQKNFIGKIEGCENDTV 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + + I ++ ARL Sbjct: 117 TISFDGK--------TVQIELGNIDKARL 137 >gi|261364308|ref|ZP_05977191.1| hypothetical protein NEIMUCOT_04406 [Neisseria mucosa ATCC 25996] gi|288567561|gb|EFC89121.1| hypothetical protein NEIMUCOT_04406 [Neisseria mucosa ATCC 25996] Length = 143 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 75/149 (50%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++++ + + + V L + L++F+++ +G +T+ DC +S +S + VE Sbjct: 2 DIQTILEKTLPGLGYELVDFELTAQG--TLRVFIDK-EGGITVEDCATVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +I + LE+SSPG+DRP+ + +DF+R+ G + L ++ IG+I G Sbjct: 59 DI--DYKNLEISSPGLDRPLKKAADFVRFAGQQAKIKTRLPVDGQKNFIGRIEGCENDTV 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 L + + I D++ ARL Sbjct: 117 TLSFDGK--------TAQIGLDNIDKARL 137 >gi|325578297|ref|ZP_08148432.1| YhbC family protein [Haemophilus parainfluenzae ATCC 33392] gi|301156200|emb|CBW15671.1| conserved protein [Haemophilus parainfluenzae T3T1] gi|325160033|gb|EGC72162.1| YhbC family protein [Haemophilus parainfluenzae ATCC 33392] Length = 151 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 76/154 (49%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + ++Q +E++ I + +++F+++ +G + + DC ++S+ +S I Sbjct: 4 LEQKLQEMLQGAVEDLGCELWGIECQRAGRFMTVRLFIDK-EGGVGVDDCADVSRQVSAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ F R+ G +A + + D++K GK+ Sbjct: 63 LDVEDPIADKYNLEVSSPGLDRPLFTLEQFQRYVGEDIAVHLRIPVLDRRKWQGKLEKIE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + + + + F ++ A +I Sbjct: 123 NDMLTLIVDGQEQVLI--------FGNIQKANVI 148 >gi|206559871|ref|YP_002230635.1| hypothetical protein BCAL1505 [Burkholderia cenocepacia J2315] gi|226734182|sp|B4E7K9|RIMP_BURCJ RecName: Full=Ribosome maturation factor rimP gi|198035912|emb|CAR51804.1| conserved hypothetical protein [Burkholderia cenocepacia J2315] Length = 152 Score = 121 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 76/154 (49%), Gaps = 8/154 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I+ + + + V++ +L I++++ ++L DCE++++ + +L VE Sbjct: 2 QLTELIETTVTGLGYELVELERTGRG--MLCIYIDQP-AGISLDDCEKVTRQLQHVLTVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DRP+ + +DF R+ G V+ + ++ G + + Sbjct: 59 NI--DYERLEVSSPGLDRPLKKLADFERFAGSEVSVTLKKPLDGRKTYRGILHAPNGETI 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 LE E K + + + ARLI + Sbjct: 117 GLEFEG---KKGEAAMLDFTLADIDKARLIPQVD 147 >gi|161524930|ref|YP_001579942.1| hypothetical protein Bmul_1757 [Burkholderia multivorans ATCC 17616] gi|189350320|ref|YP_001945948.1| hypothetical protein BMULJ_01483 [Burkholderia multivorans ATCC 17616] gi|221197755|ref|ZP_03570801.1| conserved hypothetical protein [Burkholderia multivorans CGD2M] gi|221204687|ref|ZP_03577704.1| conserved hypothetical protein [Burkholderia multivorans CGD2] gi|221214881|ref|ZP_03587849.1| conserved hypothetical protein [Burkholderia multivorans CGD1] gi|226734876|sp|A9ABD7|RIMP_BURM1 RecName: Full=Ribosome maturation factor rimP gi|160342359|gb|ABX15445.1| protein of unknown function DUF150 [Burkholderia multivorans ATCC 17616] gi|189334342|dbj|BAG43412.1| conserved hypothetical protein [Burkholderia multivorans ATCC 17616] gi|221165108|gb|EED97586.1| conserved hypothetical protein [Burkholderia multivorans CGD1] gi|221175544|gb|EEE07974.1| conserved hypothetical protein [Burkholderia multivorans CGD2] gi|221181687|gb|EEE14088.1| conserved hypothetical protein [Burkholderia multivorans CGD2M] Length = 152 Score = 121 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 75/154 (48%), Gaps = 8/154 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I+ + + + V + +L +++++ ++L DCE++++ + +L VE Sbjct: 2 QLTELIETTVTGLGYELVDLERTGRG--MLCVYIDQP-AGISLEDCEKVTRQLQHVLTVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DRP+ + +DF R+ G V+ + ++ G + + Sbjct: 59 NI--DYERLEVSSPGLDRPLKKLADFERFAGSEVSVTLKKPLDGRKTYRGILHAPNGETI 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 LE E K + + + ARLI + Sbjct: 117 GLEFE---RKKGEAAMLDFTLADIDKARLIPQVD 147 >gi|240128558|ref|ZP_04741219.1| hypothetical protein NgonS_08003 [Neisseria gonorrhoeae SK-93-1035] gi|317164605|gb|ADV08146.1| hypothetical protein NGTW08_1178 [Neisseria gonorrhoeae TCDC-NG08107] Length = 143 Score = 121 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 40/149 (26%), Positives = 77/149 (51%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++++ + + + V L + L++F+++ +G +T+ DC +S +S + VE Sbjct: 2 DIQTILEKTLPGLGYELVDFELTAQG--TLRVFIDK-EGGITVEDCATVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +I G+ LE+SSPG+DRP+ + +DF+R+ G + L G ++ IGKI G Sbjct: 59 DI--GYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIGGQKNFIGKIEGCENDTV 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + + I ++ ARL Sbjct: 117 TVSFDGK--------TVQIELGNIDKARL 137 >gi|229013000|ref|ZP_04170165.1| hypothetical protein bmyco0001_34380 [Bacillus mycoides DSM 2048] gi|228748254|gb|EEL98114.1| hypothetical protein bmyco0001_34380 [Bacillus mycoides DSM 2048] Length = 173 Score = 121 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 42/169 (24%), Positives = 83/169 (49%), Gaps = 11/169 (6%) Query: 13 PRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEE 71 R+F D + + + QP++EE++ V + ++E + L++F++ + + + +C Sbjct: 5 RRLFMDKKVTEIVEAFAQPIVEELNLELVDVEYVQEGQDWFLRVFIDS-EKGVEIEECGA 63 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+ +S LD E+ I Y L+VSSPG +RP+ ++ DF + G VA + ++ Sbjct: 64 VSERLSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYKPIDGEKMF 123 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 GK++ L + K ++ F + +L + D LLR Sbjct: 124 EGKLLSYDGNTITLLLTIKTRKKKSK------FQWI---KLQMRDLLLR 163 >gi|194289951|ref|YP_002005858.1| hypothetical protein RALTA_A1852 [Cupriavidus taiwanensis LMG 19424] gi|226696147|sp|B3R1E6|RIMP_CUPTR RecName: Full=Ribosome maturation factor rimP gi|193223786|emb|CAQ69793.1| conserved hypothetical protein [Cupriavidus taiwanensis LMG 19424] Length = 162 Score = 121 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 74/151 (49%), Gaps = 4/151 (2%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I+ + M + V++ LL++++++ + + + DCE++S+ ++ + VE Sbjct: 2 HLADLIETTLSGMGYELVELERAPAG--LLRVYIDQPETGIAIEDCEKVSRQLTHVFTVE 59 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 N+ + RLEVSSPG+DRP+ + +DF+R+ G + L ++ G + + Sbjct: 60 NV--DYERLEVSSPGLDRPLKKLADFVRFAGAEARVTLRLPVNGQKNFTGILREPTGAAG 117 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + + + ARL+ Sbjct: 118 EEKIGLEFEGKDGPALLEFAVSDVDKARLVP 148 >gi|116872752|ref|YP_849533.1| hypothetical protein lwe1336 [Listeria welshimeri serovar 6b str. SLCC5334] gi|123460990|sp|A0AIC2|RIMP_LISW6 RecName: Full=Ribosome maturation factor rimP gi|116741630|emb|CAK20754.1| conserved hypothetical protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 155 Score = 121 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 6/156 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 + + ++++P+ E+ V I+ +E L+IF+++ DG + + +C +S+ +S Sbjct: 2 SKVLEQVEAIVEPITNELQLELVDIAFEKEGPNWFLRIFIDK-DGGVDIDECAAVSEKVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +D + I +Y LEVSSPG +RP+ ++ DF V ++ G ++ Sbjct: 61 EKMDESDPITQNYFLEVSSPGAERPLKKEQDFENAVSKYVHVTSYEPIDGRKMWEGTLVS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 T + + K E I D + ARL Sbjct: 121 YDGTTLVITITDKTRKITCE----IPKDKVAKARLA 152 >gi|134295572|ref|YP_001119307.1| hypothetical protein Bcep1808_1464 [Burkholderia vietnamiensis G4] gi|166979856|sp|A4JDW9|RIMP_BURVG RecName: Full=Ribosome maturation factor rimP gi|134138729|gb|ABO54472.1| protein of unknown function DUF150 [Burkholderia vietnamiensis G4] Length = 152 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 75/154 (48%), Gaps = 8/154 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I+ + + + V + +L I++++ ++L DCE++++ + +L VE Sbjct: 2 QLTELIETTVTGLGYELVDLERTGRG--MLCIYIDQP-AGISLDDCEKVTRQLQHVLTVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DRP+ + +DF R+ G V+ + ++ G + + Sbjct: 59 NI--DYERLEVSSPGLDRPLKKLADFERFAGSEVSVTLKKPLDGRKTYRGILHAPNGETI 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 LE E+ + + + ARLI + Sbjct: 117 GLEFERN---KGEAAMLDFTLADIDKARLIPQVD 147 >gi|107022572|ref|YP_620899.1| hypothetical protein Bcen_1018 [Burkholderia cenocepacia AU 1054] gi|116689520|ref|YP_835143.1| hypothetical protein Bcen2424_1498 [Burkholderia cenocepacia HI2424] gi|170732824|ref|YP_001764771.1| hypothetical protein Bcenmc03_1474 [Burkholderia cenocepacia MC0-3] gi|254245587|ref|ZP_04938908.1| hypothetical protein BCPG_00296 [Burkholderia cenocepacia PC184] gi|122978973|sp|Q1BWS9|RIMP_BURCA RecName: Full=Ribosome maturation factor rimP gi|166979874|sp|A0K6X3|RIMP_BURCH RecName: Full=Ribosome maturation factor rimP gi|226734185|sp|B1K0L8|RIMP_BURCC RecName: Full=Ribosome maturation factor rimP gi|105892761|gb|ABF75926.1| protein of unknown function DUF150 [Burkholderia cenocepacia AU 1054] gi|116647609|gb|ABK08250.1| protein of unknown function DUF150 [Burkholderia cenocepacia HI2424] gi|124870363|gb|EAY62079.1| hypothetical protein BCPG_00296 [Burkholderia cenocepacia PC184] gi|169816066|gb|ACA90649.1| protein of unknown function DUF150 [Burkholderia cenocepacia MC0-3] Length = 152 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 76/154 (49%), Gaps = 8/154 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I+ + + + V++ +L I++++ ++L DCE++++ + +L VE Sbjct: 2 QLTELIETTVTGLGYELVELERTGRG--MLCIYIDQP-AGISLEDCEKVTRQLQHVLTVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DRP+ + +DF R+ G V+ + ++ G + + Sbjct: 59 NI--DYERLEVSSPGLDRPLKKLADFERFAGSEVSVTLKKPLDGRKTYRGILHAPNGETI 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 LE E K + + + ARLI + Sbjct: 117 GLEFEG---KKGEAAMLDFTLADIDKARLIPQVD 147 >gi|313633404|gb|EFS00240.1| conserved hypothetical protein [Listeria seeligeri FSL N1-067] Length = 155 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 70/156 (44%), Gaps = 6/156 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 + + +++ P+ +E+ V I+ +E L+IF+++ DG + + +C +S+ +S Sbjct: 2 SKVLDQVEAIVAPITDELHLELVDIAFEKEGPNWFLRIFIDK-DGGVDIDECAAVSEKVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +D + I +Y LEVSSPG +RP+ ++ DF+ V ++ G + Sbjct: 61 EKMDESDPITQNYFLEVSSPGAERPLKKEQDFVNAVSKYVHVTSYEPIDGRKMWEGTLES 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + K E I D + ARL Sbjct: 121 FDGETLVITITDKTRKITCE----IPKDKVAKARLA 152 >gi|330816692|ref|YP_004360397.1| hypothetical protein bgla_1g17960 [Burkholderia gladioli BSR3] gi|327369085|gb|AEA60441.1| hypothetical protein bgla_1g17960 [Burkholderia gladioli BSR3] Length = 153 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 76/154 (49%), Gaps = 8/154 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I+ + + + V + +L +++++ +++ DCE++++ + +L VE Sbjct: 2 QLTELIETTVTGLGYELVDLERTGRG--MLCVYIDQP-AGISIDDCEKVTRQLQHVLTVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DRP+ + +DF R+ G+ ++ + ++ G + + Sbjct: 59 NI--DYERLEVSSPGLDRPLKKLADFERFAGNEISVTLKKPLEGRKTYRGILHAPNGETI 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 LE E K + + + ARLI + Sbjct: 117 GLEFE---RKKGEAAMLDFTLADIDKARLIPQVD 147 >gi|329724310|gb|EGG60822.1| hypothetical protein SEVCU144_1771 [Staphylococcus epidermidis VCU144] Length = 155 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 77/154 (50%), Gaps = 6/154 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + + ++IQPV+ +++F V I ++ K+ L+I +++ +G + L DC S+ IS Sbjct: 2 SKITEQVEALIQPVLNDLNFELVDIEYVKEGKDHFLRISIDK-EGGVDLNDCTIASEKIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++D + I Y L+V+SPG +RP+ + DF + + ++ +G + Sbjct: 61 EVMDKNDPIPEMYYLDVASPGAERPIKKDKDFYNAINQPIFVSLYAPIEGDKEWLGVLKS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 ++ +E +++ + +I I + + AR Sbjct: 121 VNDESINMEVKEKAKTK----EIEIPRNKIAKAR 150 >gi|325526250|gb|EGD03869.1| ribosome maturation protein RimP [Burkholderia sp. TJI49] Length = 152 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 37/151 (24%), Positives = 74/151 (49%), Gaps = 8/151 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I+ + + + V + +L +++++ ++L DCE++++ + +L VE Sbjct: 2 QLTELIETTVTGLGYELVDLERTGRG--MLCVYIDQP-AGISLEDCEKVTRQLQHVLTVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DRP+ + +DF R+ G V+ + ++ G + + Sbjct: 59 NI--DYERLEVSSPGLDRPLKKLADFERFAGSEVSVTLKKPLDGRKTYRGILHAPNGETI 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 LE E K + + + ARLI Sbjct: 117 GLEFE---RKKGEAAMLDFTLADIDKARLIP 144 >gi|51892656|ref|YP_075347.1| hypothetical protein STH1518 [Symbiobacterium thermophilum IAM 14863] gi|81388945|sp|Q67P90|RIMP_SYMTH RecName: Full=Ribosome maturation factor rimP gi|51856345|dbj|BAD40503.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM 14863] Length = 160 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 71/157 (45%), Gaps = 5/157 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 L + + P + V + L++E L++++++ +G + DCE LS+ + Sbjct: 6 KRLEELVEELAAPHAAALGLELVGVELVKEGAYRYLRVYIDK-EGGVGFDDCEALSRVVD 64 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + EVSSPG+DRP+ R++DF R+ GH V ++ +G++ G Sbjct: 65 AQLDEILPNPPYDFFEVSSPGLDRPLKREADFARYVGHKVVVTTYAPVDGQKSFVGELQG 124 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + L E IA+ + SARL V Sbjct: 125 LVDGRVTLTLT---EGKGRGQTIALDRKQVASARLYV 158 >gi|310641592|ref|YP_003946350.1| ribosome maturation factor rimp [Paenibacillus polymyxa SC2] gi|309246542|gb|ADO56109.1| Ribosome maturation factor rimP [Paenibacillus polymyxa SC2] Length = 153 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 70/159 (44%), Gaps = 10/159 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + + QP ++E F V + ++ N L++FV++ DG + L DC +S+ Sbjct: 1 MSTPKIKSVVEEMAQPYLDEHGFELVDVEYVKEGSNWFLRVFVDK-DGGIDLDDCSMISE 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 + LD + + Y LEVSSPG +RP+ + D + G V ++ G+ Sbjct: 60 YLGQKLDENDPVSTAYFLEVSSPGAERPLKKAEDVTKAVGKNVFVTTYEPINGLKEFEGR 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 ++ + ++ + + I +D + ARL Sbjct: 120 LLSFEDGELTVQ--------SGQKKHTIPYDKVAGARLA 150 >gi|259586210|sp|B8CKH1|RIMP_SHEPW RecName: Full=Ribosome maturation factor rimP Length = 151 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 73/154 (47%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + +++ +E + + + K+ +L+++++ + + + DC E S+ +S + Sbjct: 4 LERKLVEMLKAPVEALGHELWGLEYIQAGKHSILRLYIDN-EKGIFIEDCAETSRQVSAV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +DVE+ I Y LEVSSPG+DRP+ + + G V ++ + + L G ++G Sbjct: 63 MDVEDPISTEYTLEVSSPGVDRPLFTAEQYQLYIGETVKVQVTMPVAGSRNLKGTVIGIE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + ++ I+ D++ LI Sbjct: 123 GQMLTLSVDG--------NELIIALDNIRKGNLI 148 >gi|27467859|ref|NP_764496.1| hypothetical protein SE0941 [Staphylococcus epidermidis ATCC 12228] gi|57866747|ref|YP_188414.1| hypothetical protein SERP0832 [Staphylococcus epidermidis RP62A] gi|251810696|ref|ZP_04825169.1| protein of hypothetical function DUF150 [Staphylococcus epidermidis BCM-HMP0060] gi|282876303|ref|ZP_06285170.1| conserved hypothetical protein [Staphylococcus epidermidis SK135] gi|293366771|ref|ZP_06613447.1| conserved hypothetical protein [Staphylococcus epidermidis M23864:W2(grey)] gi|34222847|sp|Q8CST6|RIMP_STAES RecName: Full=Ribosome maturation factor rimP gi|81674897|sp|Q5HPS6|RIMP_STAEQ RecName: Full=Ribosome maturation factor rimP gi|27315404|gb|AAO04538.1|AE016747_35 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|57637405|gb|AAW54193.1| conserved hypothetical protein [Staphylococcus epidermidis RP62A] gi|251805856|gb|EES58513.1| protein of hypothetical function DUF150 [Staphylococcus epidermidis BCM-HMP0060] gi|281295328|gb|EFA87855.1| conserved hypothetical protein [Staphylococcus epidermidis SK135] gi|291319072|gb|EFE59442.1| conserved hypothetical protein [Staphylococcus epidermidis M23864:W2(grey)] gi|329736648|gb|EGG72914.1| hypothetical protein SEVCU045_1081 [Staphylococcus epidermidis VCU045] Length = 155 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 78/154 (50%), Gaps = 6/154 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + + ++IQPV+ +++F V I ++ K+ L+I +++ +G + L DC S+ IS Sbjct: 2 SKITEQVEALIQPVLNDLNFELVDIEYVKEGKDHFLRISIDK-EGGVDLNDCTIASEKIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++D + I Y L+V+SPG +RP+ ++ DF + + ++ +G + Sbjct: 61 EVMDENDPIPEMYYLDVASPGAERPIKKEKDFYNAINQPIFVSLYAPIEGDKEWLGVLKS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 ++ +E +++ + +I I + + AR Sbjct: 121 VNDESINMEVKEKAKTK----EIEIPRNKIAKAR 150 >gi|259586206|sp|Q01W33|RIMP_SOLUE RecName: Full=Ribosome maturation factor rimP Length = 153 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 71/159 (44%), Gaps = 9/159 (5%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQA 75 + + V Q V + V++ + + L++I +++ + +T DC+ +S Sbjct: 1 MQEAVTSKVEEVAQRVAQSEGLELVEVEVKGGGSARLVRISIDKPE-GVTHADCQTVSDK 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 + IL+ E+ I GHY LEVSSPG++R +++ D+ R++G + ++ G + Sbjct: 60 VGEILEAEDAIPGHYTLEVSSPGVERKLLKPQDYQRFHGQKAKITVREEVDGRRTWEGTL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G ++ LE + FD + A L Sbjct: 120 AGFADGVISLEV-------APGEIRRLPFDQVKKANLKF 151 >gi|261379109|ref|ZP_05983682.1| hypothetical protein NEICINOT_05033 [Neisseria cinerea ATCC 14685] gi|269144429|gb|EEZ70847.1| hypothetical protein NEICINOT_05033 [Neisseria cinerea ATCC 14685] Length = 143 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 76/149 (51%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++++ + + + V L + L++F+++ +G +T+ DC +S +S + VE Sbjct: 2 DIQTILEKTLPGLGYELVDFELTAQG--TLRVFIDK-EGGITVEDCATVSNHLSRLFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +I + LE+SSPG+DRP+ + +DF+R+ G + L ++ IGKI G Sbjct: 59 DI--DYKNLEISSPGLDRPLKKAADFVRFAGQQAKIKTRLPIDGQKNFIGKIEGCENDTV 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + + I D++ ARL Sbjct: 117 TVSFDGK--------TVQIEIDNIDKARL 137 >gi|78048395|ref|YP_364570.1| hypothetical protein XCV2839 [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325924689|ref|ZP_08186127.1| hypothetical protein XPE_0035 [Xanthomonas perforans 91-118] gi|91208411|sp|Q3BRP3|RIMP_XANC5 RecName: Full=Ribosome maturation factor rimP gi|78036825|emb|CAJ24518.1| YhbC family protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325544895|gb|EGD16240.1| hypothetical protein XPE_0035 [Xanthomonas perforans 91-118] Length = 196 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 79/160 (49%), Gaps = 12/160 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVE-----RDDGNMTLRDCEELSQA 75 A +I++++ P +E + + + L L+++++ + + + + DCE +S+ Sbjct: 5 ATEIANLLSPTVESLGLELLGVEYLPAPGGATLRLYIDVPLAEQPERVINVDDCERVSRE 64 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LDVE+ I G+Y LEVSSPG+DRP+ F R G + L+ +++ G+I Sbjct: 65 VSAQLDVEDPISGNYTLEVSSPGVDRPLFTLEQFARHTGESAKIVLKLAQDGRRRFQGEI 124 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + + ++ + I +D++ AR++ Sbjct: 125 LRIDAEA------EAVVFAVDGKDVQIGYDNIDKARIVPD 158 >gi|121635281|ref|YP_975526.1| hypothetical protein NMC1555 [Neisseria meningitidis FAM18] gi|259585799|sp|A1KV49|RIMP_NEIMF RecName: Full=Ribosome maturation factor rimP gi|120866987|emb|CAM10750.1| conserved hypothetical protein [Neisseria meningitidis FAM18] gi|325128689|gb|EGC51555.1| hypothetical protein NMXN1568_0547 [Neisseria meningitidis N1568] gi|325132775|gb|EGC55457.1| hypothetical protein NMBM6190_0488 [Neisseria meningitidis M6190] gi|325136709|gb|EGC59309.1| hypothetical protein NMBM0579_0602 [Neisseria meningitidis M0579] gi|325138661|gb|EGC61217.1| hypothetical protein NMBES14902_0645 [Neisseria meningitidis ES14902] gi|325205640|gb|ADZ01093.1| conserved hypothetical protein [Neisseria meningitidis M04-240196] Length = 143 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 75/149 (50%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++++ + + + V L + L++F+++ +G +T+ DC +S +S + VE Sbjct: 2 DIQTILEKTLPGLGYELVDFELTAQG--TLRVFIDK-EGGITVEDCATVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +I + LE+SSPG+DRP+ + +DF+R+ G + L ++ IGKI G Sbjct: 59 DI--DYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIDGQKNFIGKIEGCENDTV 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + + I ++ ARL Sbjct: 117 TVSFDGK--------TVQIELGNIDKARL 137 >gi|315302975|ref|ZP_07873695.1| conserved hypothetical protein [Listeria ivanovii FSL F6-596] gi|313628655|gb|EFR97068.1| conserved hypothetical protein [Listeria ivanovii FSL F6-596] Length = 155 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 70/156 (44%), Gaps = 6/156 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 + + +++ P+ +E+ V I+ +E L+IF+++ DG + + +C +S+ +S Sbjct: 2 SKVLDQVEAIVAPITDELHLELVDIAFEKEGPNWFLRIFIDK-DGGVDIDECAAVSEKVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +D + I +Y LEVSSPG +RP+ ++ DF+ V ++ G + Sbjct: 61 EKMDESDPITQNYFLEVSSPGAERPLKKEQDFVNAISKYVHVTSYEPIDGRKMWEGTLES 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + K E I D + ARL Sbjct: 121 FDGETLVITITDKTRKITCE----IPKDKVAKARLA 152 >gi|316984983|gb|EFV63937.1| conserved hypothetical protein [Neisseria meningitidis H44/76] gi|319410894|emb|CBY91288.1| conserved hypothetical protein [Neisseria meningitidis WUE 2594] gi|325130690|gb|EGC53430.1| hypothetical protein NMBOX9930304_0543 [Neisseria meningitidis OX99.30304] gi|325140714|gb|EGC63228.1| hypothetical protein NMBCU385_0550 [Neisseria meningitidis CU385] gi|325144893|gb|EGC67180.1| hypothetical protein NMBM01240013_0663 [Neisseria meningitidis M01-240013] gi|325199765|gb|ADY95220.1| conserved hypothetical protein [Neisseria meningitidis H44/76] gi|325204602|gb|ADZ00056.1| conserved hypothetical protein [Neisseria meningitidis M01-240355] Length = 143 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 74/149 (49%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++++ + + + V L + L++F+++ + +T+ DC +S +S + VE Sbjct: 2 DIQTILEKTLPGLGYELVDFELTAQG--TLRVFIDK-ESGITVEDCATVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +I + LE+SSPG+DRP+ + +DF+R+ G + L ++ IGKI G Sbjct: 59 DI--DYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIDGQKNFIGKIEGCENDTV 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + + I ++ ARL Sbjct: 117 TVSFDGK--------TVQIELGNIDKARL 137 >gi|77919152|ref|YP_356967.1| hypothetical protein Pcar_1552 [Pelobacter carbinolicus DSM 2380] gi|91208010|sp|Q3A4B0|RIMP_PELCD RecName: Full=Ribosome maturation factor rimP gi|77545235|gb|ABA88797.1| conserved hypothetical protein [Pelobacter carbinolicus DSM 2380] Length = 162 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 83/164 (50%), Gaps = 13/164 (7%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQ 74 + I S++ PV+EE V + E +L++++++ G +TL C E+S+ Sbjct: 1 MTQQTVLDKIRSLVLPVLEEKGRELVDVEYRREGQGWILRLYIDQP-GGVTLDACAEVSR 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG------DK 128 + +L+VE+ I+ Y LEVSSPG+DRP+ + D+ R+ G + + +S + Sbjct: 60 EVGVLLEVEDPIDTAYNLEVSSPGLDRPLTKLEDYERFAGRLAKVKSRVSIDVDGKGRGR 119 Query: 129 QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + +G + G SE LE + + N ++ I F+ + A L Sbjct: 120 KTFVGVLAGLSEGKVVLELKDK-----NGFRMEIPFEDIEKANL 158 >gi|313638096|gb|EFS03363.1| conserved hypothetical protein [Listeria seeligeri FSL S4-171] Length = 155 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 70/156 (44%), Gaps = 6/156 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 + + +++ P+ +E+ V I+ +E L+IF+++ DG + + +C +S+ +S Sbjct: 2 SKVLDQVEAIVAPITDELHLELVDIAFEKEGPNWFLRIFIDK-DGGVDIDECAAVSEKVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +D + I +Y LEVSSPG +RP+ ++ DF+ V ++ G + Sbjct: 61 EKMDESDPITQNYFLEVSSPGAERPLKKEQDFVNAVSKYVHVTSYEPIDGRKMWEGTLES 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + K E I D + ARL Sbjct: 121 YDGETLVITITDKTRKITCE----IPKDKVAKARLA 152 >gi|103486102|ref|YP_615663.1| hypothetical protein Sala_0609 [Sphingopyxis alaskensis RB2256] gi|123380087|sp|Q1GVJ2|RIMP_SPHAL RecName: Full=Ribosome maturation factor rimP gi|98976179|gb|ABF52330.1| protein of unknown function DUF150 [Sphingopyxis alaskensis RB2256] Length = 181 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 51/177 (28%), Positives = 89/177 (50%), Gaps = 16/177 (9%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDD-GNMTLRDCEELSQAISPIL 80 + ++I P E M V+++ + LQ+ ER D +T+ DC +LS+ IS L Sbjct: 5 DALHAIIAPEAEAMGLALVRVAFFGGDSDPTLQVMAERPDTRQLTIDDCADLSRRISDRL 64 Query: 81 DV-----ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 D ++ I+ YRLEVSSPGIDRP+ R +DF W GH + +Q+ G + Sbjct: 65 DALEEAGQDPIDVAYRLEVSSPGIDRPLTRPADFADWAGHEAKIALKEKLDGRQRFNGTL 124 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS--LNNYGSYA 190 +G + + ++ + F ++ +A+L++TD+L+ A+ L+ G+ Sbjct: 125 VGIDGDVVTISDK-------EGVEHKLPFGAIDTAKLVLTDKLIAATVPLSAEGADE 174 >gi|259586208|sp|Q086H4|RIMP_SHEFN RecName: Full=Ribosome maturation factor rimP Length = 151 Score = 120 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 71/154 (46%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + ++ +E + F+ I + ++ +L++F++ + + + DC E S+ +S + Sbjct: 4 IESKLVEMLTVPVEALGFKLWGIEYIQAGRHSILRVFIDH-ENGINIEDCAEASRQVSAV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +DVE+ I Y LEVSSPG+DRP+ + + G ++ + + L G I Sbjct: 63 MDVEDPISTEYTLEVSSPGVDRPLFTAEQYRAYIGEETKVQLTMPVAGSRNLKGVISSVD 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + + ++ D++ +I Sbjct: 123 GQMLTITVDGKD--------LIVALDNIRKGNVI 148 >gi|16803361|ref|NP_464846.1| hypothetical protein lmo1321 [Listeria monocytogenes EGD-e] gi|224499903|ref|ZP_03668252.1| hypothetical protein LmonF1_09559 [Listeria monocytogenes Finland 1988] gi|224501736|ref|ZP_03670043.1| hypothetical protein LmonFR_04337 [Listeria monocytogenes FSL R2-561] gi|254828681|ref|ZP_05233368.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|254829922|ref|ZP_05234577.1| hypothetical protein Lmon1_01135 [Listeria monocytogenes 10403S] gi|254898514|ref|ZP_05258438.1| hypothetical protein LmonJ_01825 [Listeria monocytogenes J0161] gi|254911995|ref|ZP_05262007.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254936322|ref|ZP_05268019.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|284801706|ref|YP_003413571.1| hypothetical protein LM5578_1460 [Listeria monocytogenes 08-5578] gi|284994848|ref|YP_003416616.1| hypothetical protein LM5923_1413 [Listeria monocytogenes 08-5923] gi|315282174|ref|ZP_07870639.1| conserved hypothetical protein [Listeria marthii FSL S4-120] gi|34222940|sp|Q8Y7G0|RIMP_LISMO RecName: Full=Ribosome maturation factor rimP gi|16410737|emb|CAC99399.1| lmo1321 [Listeria monocytogenes EGD-e] gi|258601085|gb|EEW14410.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|258608912|gb|EEW21520.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|284057268|gb|ADB68209.1| hypothetical protein LM5578_1460 [Listeria monocytogenes 08-5578] gi|284060315|gb|ADB71254.1| hypothetical protein LM5923_1413 [Listeria monocytogenes 08-5923] gi|293589959|gb|EFF98293.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|313614178|gb|EFR87857.1| conserved hypothetical protein [Listeria marthii FSL S4-120] Length = 155 Score = 120 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 6/156 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 + + +++ P+ +E+ V I+ +E L+IF+++ DG + + +C +S+ +S Sbjct: 2 SKVLEQVEAIVAPITDELQLELVDIAFEKEGPNWFLRIFIDK-DGGVDIDECAAVSEKVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +D + I +Y LEVSSPG +RP+ ++ DF V ++ G ++ Sbjct: 61 EKMDENDPITQNYFLEVSSPGAERPLKKEQDFENAVSKYVHVTSYEPIDGRKMWEGTLVS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 T + + K E I D + ARL Sbjct: 121 YDGTTLVITITDKTRKITCE----IPKDKVAKARLA 152 >gi|46907547|ref|YP_013936.1| hypothetical protein LMOf2365_1338 [Listeria monocytogenes serotype 4b str. F2365] gi|47093945|ref|ZP_00231682.1| conserved hypothetical protein [Listeria monocytogenes str. 4b H7858] gi|226223922|ref|YP_002758029.1| hypothetical protein Lm4b_01329 [Listeria monocytogenes Clip81459] gi|254824620|ref|ZP_05229621.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|254852629|ref|ZP_05241977.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|254932364|ref|ZP_05265723.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|254993852|ref|ZP_05276042.1| hypothetical protein LmonocytoFSL_13365 [Listeria monocytogenes FSL J2-064] gi|255521786|ref|ZP_05389023.1| hypothetical protein LmonocFSL_11262 [Listeria monocytogenes FSL J1-175] gi|300765439|ref|ZP_07075421.1| hypothetical protein LMHG_11499 [Listeria monocytogenes FSL N1-017] gi|51316675|sp|Q720A1|RIMP_LISMF RecName: Full=Ribosome maturation factor rimP gi|259585784|sp|C1L2M7|RIMP_LISMC RecName: Full=Ribosome maturation factor rimP gi|46880815|gb|AAT04113.1| conserved hypothetical protein [Listeria monocytogenes serotype 4b str. F2365] gi|47017683|gb|EAL08479.1| conserved hypothetical protein [Listeria monocytogenes str. 4b H7858] gi|225876384|emb|CAS05093.1| unnamed protein product [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605944|gb|EEW18552.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|293583920|gb|EFF95952.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|293593858|gb|EFG01619.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|300513876|gb|EFK40941.1| hypothetical protein LMHG_11499 [Listeria monocytogenes FSL N1-017] gi|328468604|gb|EGF39604.1| ribosome maturation protein RimP [Listeria monocytogenes 1816] gi|328475043|gb|EGF45831.1| ribosome maturation protein RimP [Listeria monocytogenes 220] gi|332311764|gb|EGJ24859.1| Ribosome maturation factor rimP [Listeria monocytogenes str. Scott A] Length = 155 Score = 120 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 6/156 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 + + +++ P+ +E+ V I+ +E L+IF+++ DG + + +C +S+ +S Sbjct: 2 SKVLEQVEAIVTPITDELQLELVDIAFEKEGPNWFLRIFIDK-DGGVDIDECAAVSEKVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +D + I +Y LEVSSPG +RP+ ++ DF V ++ G ++ Sbjct: 61 EKMDENDPITQNYFLEVSSPGAERPLKKEQDFENAVSKYVHVTSYEPIDGRKMWEGTLVS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 T + + K E I D + ARL Sbjct: 121 YDGTTLVITITDKTRKITCE----IPKDKVAKARLA 152 >gi|217964532|ref|YP_002350210.1| hypothetical protein LMHCC_1249 [Listeria monocytogenes HCC23] gi|290893568|ref|ZP_06556551.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|254800006|sp|B8DG06|RIMP_LISMH RecName: Full=Ribosome maturation factor rimP gi|217333802|gb|ACK39596.1| conserved hypothetical protein [Listeria monocytogenes HCC23] gi|290556913|gb|EFD90444.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|307570902|emb|CAR84081.1| conserved hypothetical protein [Listeria monocytogenes L99] gi|313608988|gb|EFR84730.1| conserved hypothetical protein [Listeria monocytogenes FSL F2-208] Length = 155 Score = 120 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 6/156 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 + + +++ P+ +E+ V I +E L+IF+++ DG + + +C +S+ +S Sbjct: 2 SKVLEQVEAIVAPITDELQLELVDIVFEKEGPNWFLRIFIDK-DGGVDIDECAAVSEKVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +D + I +Y LEVSSPG +RP+ ++ DF V ++ G ++ Sbjct: 61 EKMDENDPITQNYFLEVSSPGAERPLKKEQDFENAVSKYVHVTSYEPIDGRKMWEGTLVS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 T + + K E I D + ARL Sbjct: 121 YDGTTLVITITDKTRKITCE----IPKDKVAKARLA 152 >gi|257094535|ref|YP_003168176.1| hypothetical protein CAP2UW1_2969 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047059|gb|ACV36247.1| protein of unknown function DUF150 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 155 Score = 120 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 81/163 (49%), Gaps = 13/163 (7%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD--DGNMTLRDCEELSQAISPILD 81 D+ V++ + + ++ V + + +L++F+++ + + DC +S ++ +L Sbjct: 2 DLHEVLEVTVTGLGYQLVDVERSP-RGRVLRVFIDKPAKPRGVDVEDCALVSNQLTRVLL 60 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VENI + RLEVSSPG+DRP+ ++ DF R+ G V ++ L ++ G + G + Sbjct: 61 VENI--DYERLEVSSPGLDRPLTKEVDFERFAGSEVTIKLRLPLNGRRNFAGVLHGAQDG 118 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLN 184 ++ + +I ++ ARL+ +L ++S Sbjct: 119 KVRVQID--------SGEIEFDLANIDKARLVPDFDLKKSSNR 153 >gi|21243418|ref|NP_643000.1| hypothetical protein XAC2689 [Xanthomonas axonopodis pv. citri str. 306] gi|34223124|sp|Q8PJ53|RIMP_XANAC RecName: Full=Ribosome maturation factor rimP gi|21108969|gb|AAM37536.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 196 Score = 120 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 79/160 (49%), Gaps = 12/160 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVE-----RDDGNMTLRDCEELSQA 75 A +I++++ P +E + + + L L+++++ + + + + DCE +S+ Sbjct: 5 ATEIANLLSPTVESLGLELLGVEYLPAPGGATLRLYIDVPLAEQPERVINVDDCERVSRE 64 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LDVE+ I G+Y LEVSSPG+DRP+ F R G + L+ +++ G+I Sbjct: 65 VSAQLDVEDPISGNYTLEVSSPGVDRPLFTLEQFARHTGESAKIVLKLAQDGRRRFQGQI 124 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + + ++ + I +D++ AR++ Sbjct: 125 LRID------AEAAAVVFAVDGKDVQIGYDNIDKARIVPD 158 >gi|323340012|ref|ZP_08080278.1| protein of hypothetical function DUF150 [Lactobacillus ruminis ATCC 25644] gi|323092518|gb|EFZ35124.1| protein of hypothetical function DUF150 [Lactobacillus ruminis ATCC 25644] Length = 157 Score = 120 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 69/158 (43%), Gaps = 8/158 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + ++ ++ P+++E F V ++ K+ L+I++++ G + + +C +S + Sbjct: 2 SSVVETVTELVTPILDERHFELVDAEFVKEGKSWYLRIYIDKP-GGINIEECALVSDLLG 60 Query: 78 PILDVENI--IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + I Y LEVSSPG +RP+ ++ D+ R + + + + G + Sbjct: 61 EKLDNCDPDPIPQAYFLEVSSPGAERPLKKERDYERALNYYIHVSLYQPLEGNKVYEGTM 120 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + LE + + I I + ARL Sbjct: 121 VDLKPDELTLEYMDK----TRQKTIVIPRKQIAQARLA 154 >gi|16800426|ref|NP_470694.1| hypothetical protein lin1358 [Listeria innocua Clip11262] gi|34222948|sp|Q92C33|RIMP_LISIN RecName: Full=Ribosome maturation factor rimP gi|16413831|emb|CAC96589.1| lin1358 [Listeria innocua Clip11262] gi|313619130|gb|EFR90920.1| conserved hypothetical protein [Listeria innocua FSL S4-378] Length = 155 Score = 120 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 72/156 (46%), Gaps = 6/156 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 + + +++ P+ +E+ V I+ +E L+IF+++ DG + + +C +S+ +S Sbjct: 2 SKVLEQVEAIVAPITDELQLELVDIAFEKEGPNWFLRIFIDK-DGGVDIDECAAVSEKVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +D + I +Y LEVSSPG +RP+ ++ DF G V ++ G ++ Sbjct: 61 EKMDESDPITQNYFLEVSSPGAERPLKKEQDFENAVGKYVHVTSYEPIDGRKMWEGTLVS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 T + + K E I D + ARL Sbjct: 121 YDGTTLVITITDKTRKITCE----IPKDKVAKARLA 152 >gi|289434602|ref|YP_003464474.1| hypothetical protein lse_1237 [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170846|emb|CBH27388.1| conserved hypothetical protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 155 Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 70/156 (44%), Gaps = 6/156 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 + + +++ P+ +E+ V I+ +E L++F+++ DG + + +C +S+ +S Sbjct: 2 SKVLDQVEAIVAPITDELHLELVDIAFEKEGPNWFLRVFIDK-DGGVDIDECAAVSEKVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +D + I +Y LEVSSPG +RP+ ++ DF+ V ++ G + Sbjct: 61 EKMDESDPITQNYFLEVSSPGAERPLKKEQDFVNAVSKYVHVTSYEPIDGRKMWEGTLES 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + K E I D + ARL Sbjct: 121 YDGETLVITITDKTRKITCE----IPKDKVAKARLA 152 >gi|319892282|ref|YP_004149157.1| transcription termination protein NusA-like protein [Staphylococcus pseudintermedius HKU10-03] gi|317161978|gb|ADV05521.1| transcription termination protein NusA-like protein [Staphylococcus pseudintermedius HKU10-03] gi|323464621|gb|ADX76774.1| conserved hypothetical protein [Staphylococcus pseudintermedius ED99] Length = 155 Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 73/154 (47%), Gaps = 6/154 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 + + ++IQPV++E++F V + +E L+I +++ G + L DC S+ IS Sbjct: 2 SKVTEQVETIIQPVLDELNFELVDVEFAKEGRDHYLRIAIDKP-GGVDLNDCTLASERIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++D ++ I Y L+VSSPG +RP+ + F + + ++ +G + Sbjct: 61 EVMDEQDPIPQAYYLDVSSPGAERPIKNEKGFQNAIEQPIFVSLYAPIEGDKEWLGHLKS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 +E +E + + + I I D + AR Sbjct: 121 VTEDAITMEVKVKAKTK----TITIPRDKIAKAR 150 >gi|311068182|ref|YP_003973105.1| hypothetical protein BATR1942_06100 [Bacillus atrophaeus 1942] gi|310868699|gb|ADP32174.1| hypothetical protein BATR1942_06100 [Bacillus atrophaeus 1942] Length = 157 Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 75/159 (47%), Gaps = 6/159 (3%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQA 75 + + QP+ + + V I ++E N L++F++ D + + +C ++S+ Sbjct: 1 MSKKVIDTAREMAQPIADNLQLELVDIEFVKEGQNWFLRVFIDS-DNGVDIEECAKVSEL 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LD + I +Y LEVSSPG +RP+ +K+DF R G V + + G++ Sbjct: 60 LSEKLDEADPISQNYFLEVSSPGAERPLKKKADFDRSLGKNVYIKTYEPIDGVKVFEGEL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + + +I I ++ + +ARL V Sbjct: 120 AEFDGQTVTVEMTIK----TRKKRINIPYEKIANARLAV 154 >gi|254521461|ref|ZP_05133516.1| conserved hypothetical protein [Stenotrophomonas sp. SKA14] gi|219719052|gb|EED37577.1| conserved hypothetical protein [Stenotrophomonas sp. SKA14] Length = 196 Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 83/163 (50%), Gaps = 12/163 (7%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVE-----RDDGNMTLRDCEEL 72 A DI++++ P + + + + L L+++++ + + + + DCE + Sbjct: 2 SDKATDIANLLAPTVVSLGLELLGVEYLPAPGGATLRLYIDVPLAEQPERIINVDDCERV 61 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+ +S +DVE+ I G+Y LEVSSPG+DRP+ F R G + + L ++++L Sbjct: 62 SREVSAQMDVEDPISGNYTLEVSSPGVDRPLFNLEQFGRHLGEMAKVTLKLPQDNRRRLQ 121 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 G+I T E + +++ ++ +S D++ AR++ Sbjct: 122 GRIEATDEAADTITF------VVDKTEVIVSADNIDKARIMPD 158 >gi|15614980|ref|NP_243283.1| hypothetical protein BH2417 [Bacillus halodurans C-125] gi|34223162|sp|Q9KA73|RIMP_BACHD RecName: Full=Ribosome maturation factor rimP gi|10175037|dbj|BAB06136.1| BH2417 [Bacillus halodurans C-125] Length = 156 Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 76/159 (47%), Gaps = 6/159 (3%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQA 75 + + +++P++E++ + + K+ L++F++ + + L DC ++S+ Sbjct: 1 MGKKVVDITAELVKPILEQLDLELYDVEFKKEGKDWFLRVFIDS-ETGVDLEDCGKVSER 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LD + IE Y LEVSSPG +RP+ R+ D LR G V + ++ L G++ Sbjct: 60 LSEKLDETDPIEQAYFLEVSSPGAERPLKREKDLLRSIGKNVHVTLYEPIDGEKALEGEL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + + + I + + SARL V Sbjct: 120 TEFDGETLTIEI----KIKTRKKTVTIPYAKVASARLAV 154 >gi|239999348|ref|ZP_04719272.1| hypothetical protein Ngon3_07677 [Neisseria gonorrhoeae 35/02] gi|240014532|ref|ZP_04721445.1| hypothetical protein NgonD_07784 [Neisseria gonorrhoeae DGI18] gi|240016978|ref|ZP_04723518.1| hypothetical protein NgonFA_07392 [Neisseria gonorrhoeae FA6140] gi|240081420|ref|ZP_04725963.1| hypothetical protein NgonF_08941 [Neisseria gonorrhoeae FA19] gi|240113615|ref|ZP_04728105.1| hypothetical protein NgonM_08610 [Neisseria gonorrhoeae MS11] gi|240118337|ref|ZP_04732399.1| hypothetical protein NgonPID_07718 [Neisseria gonorrhoeae PID1] gi|240121054|ref|ZP_04734016.1| hypothetical protein NgonPI_04654 [Neisseria gonorrhoeae PID24-1] gi|240123885|ref|ZP_04736841.1| hypothetical protein NgonP_08079 [Neisseria gonorrhoeae PID332] gi|240126084|ref|ZP_04738970.1| hypothetical protein NgonSK_07689 [Neisseria gonorrhoeae SK-92-679] Length = 143 Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 40/149 (26%), Positives = 77/149 (51%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++++ + + + V L + L++F+++ +G +T+ DC +S +S + VE Sbjct: 2 DIQTILEKTLPGLGYELVDFELAAQG--TLRVFIDK-EGGITVEDCATVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +I G+ LE+SSPG+DRP+ + +DF+R+ G + L G ++ IGKI G Sbjct: 59 DI--GYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIGGQKNFIGKIEGCENDTV 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + + I ++ ARL Sbjct: 117 TVSFDGK--------TVQIELGNIDKARL 137 >gi|15605802|ref|NP_213179.1| hypothetical protein aq_260 [Aquifex aeolicus VF5] gi|6647906|sp|O66619|RIMP_AQUAE RecName: Full=Ribosome maturation factor rimP gi|2982974|gb|AAC06588.1| hypothetical protein aq_260 [Aquifex aeolicus VF5] Length = 158 Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 82/158 (51%), Gaps = 8/158 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + +++PVI M F+ + + +L+I ++ +G +T++DCEE+S+ Sbjct: 3 INREEIEKKVKEIVEPVIRGMGFKLFDVEFKPEGRGWVLRIIADK-EGGITIKDCEEISR 61 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 +S +LDVE+II Y LE++SPG+ RP+ + + + G +V + K++++G Sbjct: 62 KVSALLDVEDIIPFSYLLEITSPGLTRPLTKVEHYDFFKGRLVKLILKEPIEGKREVVGY 121 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 I + ++++G+ + I F ++ RL Sbjct: 122 IEDVKNGIIDIREKEKGK------VLHIPFSAIAKGRL 153 >gi|242242548|ref|ZP_04796993.1| protein of hypothetical function DUF150 [Staphylococcus epidermidis W23144] gi|242233975|gb|EES36287.1| protein of hypothetical function DUF150 [Staphylococcus epidermidis W23144] gi|319401445|gb|EFV89655.1| conserved hypothetical protein [Staphylococcus epidermidis FRI909] Length = 155 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 77/154 (50%), Gaps = 6/154 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + + ++IQPV+ ++ F V I ++ K+ L+I +++ +G + L DC S+ IS Sbjct: 2 SKITEQVEALIQPVLNDLDFELVDIEYVKEGKDHFLRISIDK-EGGVDLNDCTLASEKIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++D + I Y L+V+SPG +RP+ ++ DF + + ++ +G + Sbjct: 61 EVMDENDPIPEMYYLDVASPGAERPIKKEKDFYNAINQPIFVSLYAPIEGDKEWLGILKS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 ++ +E +++ + +I I + + AR Sbjct: 121 VNDESINMEVKEKAKTK----EIEIPRNKIAKAR 150 >gi|325921397|ref|ZP_08183254.1| hypothetical protein XGA_2246 [Xanthomonas gardneri ATCC 19865] gi|325548155|gb|EGD19152.1| hypothetical protein XGA_2246 [Xanthomonas gardneri ATCC 19865] Length = 196 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 78/160 (48%), Gaps = 12/160 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVE-----RDDGNMTLRDCEELSQA 75 A +I++++ P +E + + + L L+++++ + + + + DCE +S+ Sbjct: 5 ATEIANLLSPTVESLGLELLGVEYLPAPGGATLRLYIDVPLAEQPERVINVDDCERVSRE 64 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LDVE+ I G+Y LEVSSPG+DRP+ F R G + L+ +++ GKI Sbjct: 65 VSAQLDVEDPITGNYTLEVSSPGVDRPLFTLEQFARHVGESAKIVLKLAQDGRRRFQGKI 124 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + ++ + I FD++ AR++ Sbjct: 125 LRIEAEA------DAVVFAIDGKDVQIGFDNIDKARILPD 158 >gi|167587340|ref|ZP_02379728.1| hypothetical protein BuboB_18484 [Burkholderia ubonensis Bu] Length = 152 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 74/154 (48%), Gaps = 8/154 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I+ + + + V + +L I++++ ++L DCE++++ + +L VE Sbjct: 2 QLTELIETTVTGLGYELVDLERTGRG--MLCIYIDQP-AGISLDDCEKVTRQLQHVLTVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DRP+ + +DF R+ G + + ++ G + + Sbjct: 59 NI--DYERLEVSSPGLDRPLKKLADFERFAGSEASVTLKKPLDGRKTYRGILHAPNGETI 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 LE E+ + + + ARLI + Sbjct: 117 GLEFERN---KGEAAMLDFTLADIDKARLIPQVD 147 >gi|66767927|ref|YP_242689.1| hypothetical protein XC_1603 [Xanthomonas campestris pv. campestris str. 8004] gi|81306096|sp|Q4UWA4|RIMP_XANC8 RecName: Full=Ribosome maturation factor rimP gi|66573259|gb|AAY48669.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] Length = 196 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 39/160 (24%), Positives = 78/160 (48%), Gaps = 12/160 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVE-----RDDGNMTLRDCEELSQA 75 A +I++++ P +E + + + L L+++++ + D + + DCE +S+ Sbjct: 5 ATEIANLLGPTVESLGLELLGVEYLPAPGGATLRLYIDVPLAEQPDRIINVDDCERVSRE 64 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LDVE+ I G+Y LEVSSPG+DRP+ F R G + L+ +++ G+I Sbjct: 65 VSAQLDVEDPISGNYTLEVSSPGVDRPLFTLDQFARHVGESAKIVLKLAQDGRRRFQGQI 124 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + + ++ + I F ++ AR++ Sbjct: 125 VRIDTEAAAVVF------SVDGKDVQIGFGNIDKARILPD 158 >gi|320354997|ref|YP_004196336.1| hypothetical protein Despr_2912 [Desulfobulbus propionicus DSM 2032] gi|320123499|gb|ADW19045.1| protein of unknown function DUF150 [Desulfobulbus propionicus DSM 2032] Length = 153 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 83/151 (54%), Gaps = 10/151 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I +P++ +M V++ E +L+ F+++ +G +T+ DC ++S+ IS L+VE Sbjct: 12 IQGFAEPLLADMGMELVEVQFRREGHGWVLRFFIDK-EGGITIDDCADVSREISAYLEVE 70 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 ++I+ Y LEVSSPG++RP+ +K DF R+ ++ ++ G+++ L G ++G Sbjct: 71 DLIDHAYHLEVSSPGLERPLRKKEDFHRFIDRLIRVKLREPLGEQKVLTGTLLGMEGDTV 130 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L + + I ++++ ARL + Sbjct: 131 LLALDSE--------TVRIDWENISKARLTL 153 >gi|149185834|ref|ZP_01864149.1| hypothetical protein ED21_23911 [Erythrobacter sp. SD-21] gi|148830395|gb|EDL48831.1| hypothetical protein ED21_23911 [Erythrobacter sp. SD-21] Length = 185 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 19/180 (10%) Query: 23 GDISSVIQPVIEEMSFRSVQISLL----EEKNLLLQIFVERDDGN-MTLRDCEELSQAIS 77 ++ VI+P + + F V++ ++ + + LQI E + + C LS+ +S Sbjct: 5 ERLTEVIEPEAQALGFELVRVKMVPSEAGDGGMALQIMAEDPATGQLVIEQCAALSRRVS 64 Query: 78 PILDV-----ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 +LD E ++ G Y LEVSSPGIDRP+ R DF W GH + + + Sbjct: 65 DMLDQLEEQGEVLVPGAYHLEVSSPGIDRPLTRAKDFENWAGHEAKIALTEKVHGYRTVK 124 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS--LNNYGSYA 190 G++ G ++ +++ + + SA+L++TDEL+ A+ L+ G+ Sbjct: 125 GELKGIDGDMVTVDIPGA-------KEVSFPRNLIHSAKLVLTDELIAATQPLDTSGADD 177 >gi|308068696|ref|YP_003870301.1| hypothetical protein PPE_01927 [Paenibacillus polymyxa E681] gi|305857975|gb|ADM69763.1| Conserved hypothetical protein [Paenibacillus polymyxa E681] Length = 153 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 70/159 (44%), Gaps = 10/159 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + + QP ++E F V + ++ N L++FV++ DG + L DC +S+ Sbjct: 1 MSTPKIKSVVEEMAQPYLDEHGFELVDVEYVKEGSNWFLRVFVDK-DGGIDLDDCSMISE 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 + LD + + Y LEVSSPG +RP+ + D + G V ++ G+ Sbjct: 60 YLGQKLDENDPVSTAYFLEVSSPGAERPLKKAEDVTKAVGKNVFVTTYEPINGLKEFEGR 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 ++ + ++ + + I +D + ARL Sbjct: 120 LLSFEDGELTVQ--------SGQKKHVIPYDKVAGARLA 150 >gi|222151099|ref|YP_002560253.1| hypothetical protein MCCL_0850 [Macrococcus caseolyticus JCSC5402] gi|254806624|sp|B9EBE6|RIMP_MACCJ RecName: Full=Ribosome maturation factor rimP gi|222120222|dbj|BAH17557.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 155 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 6/157 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 + + ++ QPV+E + F V + ++E L+I +++ G + + DC S+ IS Sbjct: 2 SKVTERVEAICQPVVESLGFELVDVEYVKEGPDYYLRIAIDKP-GGIDISDCALASEKIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++D E+ I Y L+VSSPG +RP+ ++ D+ G V ++ ++ IG++ Sbjct: 61 EVMDKEDPITEAYFLDVSSPGAERPLKKEKDYENAIGKHVYVKLYEPVEGDKEWIGELKE 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 S+ L + I I + RL V Sbjct: 121 VSKDTITLS----AKIKTRTKVIEIDRKRIAKIRLAV 153 >gi|261867878|ref|YP_003255800.1| hypothetical protein D11S_1199 [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413210|gb|ACX82581.1| protein YhbC [Aggregatibacter actinomycetemcomitans D11S-1] Length = 151 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 80/154 (51%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + ++Q +E+ + I + L +++F+++ +G +T+ DC ++S+ +S + Sbjct: 4 LEQKLQDLLQGSVEDFGCQLWGIECQRVGRYLTVRLFIDK-EGGVTVEDCADVSRQVSAV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ + + R+ G + + + D++K G++ Sbjct: 63 LDVEDPIADKYNLEVSSPGLDRPLFTLAQYARYVGQEILVHLRIPVADRRKWQGELAKIE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L +K+ + ++F ++ A ++ Sbjct: 123 NDMITLIVDKQEQI--------LAFGNIQKASVV 148 >gi|94263058|ref|ZP_01286877.1| Protein of unknown function DUF150 [delta proteobacterium MLMS-1] gi|94272102|ref|ZP_01292068.1| Protein of unknown function DUF150 [delta proteobacterium MLMS-1] gi|93450238|gb|EAT01519.1| Protein of unknown function DUF150 [delta proteobacterium MLMS-1] gi|93456601|gb|EAT06709.1| Protein of unknown function DUF150 [delta proteobacterium MLMS-1] Length = 155 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 44/158 (27%), Positives = 78/158 (49%), Gaps = 10/158 (6%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQA 75 D L+ ++ ++QPV+E+ + E +L++ ++ DD +TL DC +S+ Sbjct: 4 ADKALSARLTELLQPVVEDHGLELADLQFRREPAGWVLRLVIDGDD-GVTLDDCTRISRE 62 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +L+VE+ IE + LEVSSPG+DRP+ R+ D+ R G + +IG+I Sbjct: 63 VSHLLEVEDPIEQAFNLEVSSPGLDRPLKREQDYRRCRGRKAKLVCREPIAGEPVVIGEI 122 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 +E + E +A+ + ARL+ Sbjct: 123 GEMAEQVVTIITE--------AGPVAVPLAQVKRARLV 152 >gi|115351433|ref|YP_773272.1| hypothetical protein Bamb_1380 [Burkholderia ambifaria AMMD] gi|170700024|ref|ZP_02891049.1| protein of unknown function DUF150 [Burkholderia ambifaria IOP40-10] gi|171317090|ref|ZP_02906293.1| protein of unknown function DUF150 [Burkholderia ambifaria MEX-5] gi|172060472|ref|YP_001808124.1| hypothetical protein BamMC406_1420 [Burkholderia ambifaria MC40-6] gi|122323374|sp|Q0BFY5|RIMP_BURCM RecName: Full=Ribosome maturation factor rimP gi|226734154|sp|B1YP34|RIMP_BURA4 RecName: Full=Ribosome maturation factor rimP gi|115281421|gb|ABI86938.1| protein of unknown function DUF150 [Burkholderia ambifaria AMMD] gi|170135083|gb|EDT03386.1| protein of unknown function DUF150 [Burkholderia ambifaria IOP40-10] gi|171097724|gb|EDT42551.1| protein of unknown function DUF150 [Burkholderia ambifaria MEX-5] gi|171992989|gb|ACB63908.1| protein of unknown function DUF150 [Burkholderia ambifaria MC40-6] Length = 152 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 75/154 (48%), Gaps = 8/154 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I+ + + + V + +L I++++ ++L DCE++++ + +L VE Sbjct: 2 QLTELIETTVTGLGYELVDLERTGRG--MLCIYIDQL-AGISLEDCEKVTRQLQHVLTVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DRP+ + +DF R+ G V+ + ++ G + + Sbjct: 59 NI--DYERLEVSSPGLDRPLKKLADFERFAGSEVSVTLKKPLDGRKTYRGILHAPNGETI 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 LE E K + + + ARLI + Sbjct: 117 GLEFEG---KKGEAAMLDFTLADIDKARLIPQVD 147 >gi|94310971|ref|YP_584181.1| hypothetical protein Rmet_2033 [Cupriavidus metallidurans CH34] gi|166980260|sp|Q1LLR4|RIMP_RALME RecName: Full=Ribosome maturation factor rimP gi|93354823|gb|ABF08912.1| conserved hypothetical protein [Cupriavidus metallidurans CH34] Length = 162 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 77/151 (50%), Gaps = 4/151 (2%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I+ + M + V++ LL++++++ + + + DCE++S+ ++ +L VE Sbjct: 2 HLADLIETTLIGMGYELVELERAPAG--LLRVYIDQPETGIVIEDCEKVSRQLTHVLTVE 59 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 N+ + RLEVSSPG+DRP+ + +DF+R+ G V + L ++ +G + + Sbjct: 60 NV--DYERLEVSSPGLDRPLKKLADFVRFAGAEVRVTLRLPVNGQKNFVGILCEPAGDAG 117 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + + + ARL+ Sbjct: 118 AEKIGLEFEGKDGPALLEFAISDVDRARLVP 148 >gi|310778371|ref|YP_003966704.1| protein of unknown function DUF150 [Ilyobacter polytropus DSM 2926] gi|309747694|gb|ADO82356.1| protein of unknown function DUF150 [Ilyobacter polytropus DSM 2926] Length = 158 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 11/159 (6%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQA 75 + I + PV E V I L++ +++++E+ D +TL DC +S Sbjct: 5 AKAAIVEKIWDLTTPVASEFGLDIVDIEYLQDGGYWYVRVYIEKPDAEITLVDCANVSNR 64 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I DV+ +I+ + LEVSSPGI+RP+ + DF+R+ G + D + G+I Sbjct: 65 IEE--DVDALIDKKFFLEVSSPGIERPLKSEKDFIRFVGEKARLILKHKLEDSRNWTGEI 122 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +L + + + I F + A L+ Sbjct: 123 SSFENGIIYLSTDGKK--------LEIPFSEVKKANLVF 153 >gi|257865908|ref|ZP_05645561.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257872241|ref|ZP_05651894.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257875535|ref|ZP_05655188.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] gi|257799842|gb|EEV28894.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257806405|gb|EEV35227.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257809701|gb|EEV38521.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] Length = 157 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 76/156 (48%), Gaps = 8/156 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + ++ ++ P+++ F V++ ++ KN L++F+++ +G + + +C +S+ +S Sbjct: 4 VVETVTDIVTPILDAQKFELVEVEFVKEGKNWFLRVFIDK-EGGIDIEECAFVSEQLSEQ 62 Query: 80 LD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + I Y LEVSSPG +RP+ +++D+ R G + + +++ G + Sbjct: 63 LDQCEPDPIPQAYFLEVSSPGAERPLKKEADYQRAVGEYIHVSLYQPIDGEKQFEGFLQS 122 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 E + + E + I ++ ARL Sbjct: 123 FDENQLVI----KTRIKTREKERTIDRKNIAKARLA 154 >gi|325915553|ref|ZP_08177864.1| hypothetical protein XVE_1758 [Xanthomonas vesicatoria ATCC 35937] gi|325538269|gb|EGD09954.1| hypothetical protein XVE_1758 [Xanthomonas vesicatoria ATCC 35937] Length = 196 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 79/160 (49%), Gaps = 12/160 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVE-----RDDGNMTLRDCEELSQA 75 A +I++++ P +E + + + L L+++++ + + + + DCE +S+ Sbjct: 5 ATEIANLLSPTVESLGLELLGVEYLPAPGGATLRLYIDVPLAEQPERVINVDDCERVSRE 64 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LDVE+ I G+Y LEVSSPG+DRP+ F R G + L+ +++ G+I Sbjct: 65 VSAQLDVEDPISGNYTLEVSSPGVDRPLFTLEQFARHAGESAKIVLKLAQDGRRRFQGQI 124 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + T ++ + I FD++ AR++ Sbjct: 125 LRTETEA------DAVVFSVDGKDVQIGFDNIDKARILPD 158 >gi|238027586|ref|YP_002911817.1| hypothetical protein bglu_1g20040 [Burkholderia glumae BGR1] gi|237876780|gb|ACR29113.1| Hypothetical protein bglu_1g20040 [Burkholderia glumae BGR1] Length = 153 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 75/154 (48%), Gaps = 8/154 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I+ + + + V + +L +++++ +++ DCE++++ + +L VE Sbjct: 2 QLTELIETTVTGLGYELVDLERTGRG--MLCVYIDQP-AGISIDDCEKVTRQLQHVLTVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DRP+ + +DF R+ G ++ + ++ G + + Sbjct: 59 NI--DYERLEVSSPGLDRPLKKLADFERFAGSEISVTLKKPLEGRKTYRGILHAPNGETI 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 LE E K + + + ARLI + Sbjct: 117 GLEFE---MKKGEAAMLDFTLADIDKARLIPQVD 147 >gi|85373512|ref|YP_457574.1| hypothetical protein ELI_03425 [Erythrobacter litoralis HTCC2594] gi|122544926|sp|Q2NC14|RIMP_ERYLH RecName: Full=Ribosome maturation factor rimP gi|84786595|gb|ABC62777.1| hypothetical protein ELI_03425 [Erythrobacter litoralis HTCC2594] Length = 188 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 50/182 (27%), Positives = 91/182 (50%), Gaps = 19/182 (10%) Query: 23 GDISSVIQPVIEEMSFRSVQISLL----EEKNLLLQIFVERDDGN-MTLRDCEELSQAIS 77 ++++I+P + + F V++ ++ + LQI E + + C ELS+ +S Sbjct: 5 ARLTALIEPEAKALGFELVRVKMMPSEAGDGGQALQIMAEDPATGQLLIEQCAELSRKVS 64 Query: 78 PILDV-----ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 ++D E +IEG Y LEVSSPGIDRP+ R DF W GH +V + + Sbjct: 65 DVIDAAEESGEVLIEGAYHLEVSSPGIDRPLTRPKDFADWAGHEAKVSLVEKIDGHRNMR 124 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS--LNNYGSYA 190 G ++G + + G +++ + + + SA+L++TD+L+ A+ L+ G+ Sbjct: 125 GILLGIDGETVTIADNRAG-------EVSFALEQIHSAKLVLTDKLIAATQPLDADGAEE 177 Query: 191 GL 192 L Sbjct: 178 VL 179 >gi|194366590|ref|YP_002029200.1| hypothetical protein Smal_2817 [Stenotrophomonas maltophilia R551-3] gi|226701526|sp|B4SQS2|RIMP_STRM5 RecName: Full=Ribosome maturation factor rimP gi|194349394|gb|ACF52517.1| protein of unknown function DUF150 [Stenotrophomonas maltophilia R551-3] Length = 196 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 39/163 (23%), Positives = 81/163 (49%), Gaps = 12/163 (7%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVE-----RDDGNMTLRDCEEL 72 A DI++++ P + + + + L L+++++ + + + + DCE + Sbjct: 2 SDKATDIANLLAPTVVSLGLELLGVEYLPAPGGATLRLYIDVPLAEQPERIINVDDCERV 61 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+ +S +DVE+ I G+Y LEVSSPG+DRP+ F R G + L ++++L Sbjct: 62 SREVSAQMDVEDPISGNYTLEVSSPGVDRPLFNLEQFGRHLGESAKVTLKLPQDNRRRLQ 121 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 G+I E + +++ ++ +S D++ AR++ Sbjct: 122 GRIEAIDEAAGAITF------IVDKAEVVVSADNIDKARIMPD 158 >gi|206900815|ref|YP_002250929.1| YlxS [Dictyoglomus thermophilum H-6-12] gi|259585753|sp|B5YEH1|RIMP_DICT6 RecName: Full=Ribosome maturation factor rimP gi|206739918|gb|ACI18976.1| YlxS [Dictyoglomus thermophilum H-6-12] Length = 156 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 47/153 (30%), Positives = 79/153 (51%), Gaps = 10/153 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++P+ E+ S+ V + E +L++++++ G +T+ DC LS+ IS LD Sbjct: 11 KKLKEIVEPICEKYSYELVDLEYRREPHGWVLRVYIDKV-GGVTVEDCAYLSEKISKELD 69 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 +++ I Y LEVSSPG+DRP+ RK DF R G V ++ K+K GKI E+ Sbjct: 70 IKDPIPHSYILEVSSPGLDRPLKRKRDFERHMGEKVNITLLEEIEGKKKFEGKIFKVDES 129 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L+ + + I + + A LIV Sbjct: 130 SVTLKIDDSF--------VTIPLEKIKKAMLIV 154 >gi|256827234|ref|YP_003151193.1| hypothetical protein Ccur_08070 [Cryptobacterium curtum DSM 15641] gi|256583377|gb|ACU94511.1| uncharacterized conserved protein [Cryptobacterium curtum DSM 15641] Length = 177 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 38/168 (22%), Positives = 68/168 (40%), Gaps = 8/168 (4%) Query: 6 FLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNM 64 F S + G + ++P E V I ++ K +++F++ D + Sbjct: 9 FFCSGRKRGCQILTGKETRLLEALEPTAREKGIEIVSIEIVGSRKAPTIRVFIDTPD-GV 67 Query: 65 TLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS 124 + I+ I+D + G Y LEVSSPGIDRP+ F R++G + Sbjct: 68 SFDALASAQSWINEIMDAIDPFPGAYMLEVSSPGIDRPLRTPEHFQRFSGQEAQIVLRAP 127 Query: 125 SGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + K G + G ++ L + E +I++D++ A L Sbjct: 128 IDGRSKFTGMLKGFADGAVLLLVDGADEVT------SINYDAIKRAHL 169 >gi|325290364|ref|YP_004266545.1| Ribosome maturation factor rimP [Syntrophobotulus glycolicus DSM 8271] gi|324965765|gb|ADY56544.1| Ribosome maturation factor rimP [Syntrophobotulus glycolicus DSM 8271] Length = 152 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 76/153 (49%), Gaps = 10/153 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + +++P+ EE+ V + ++ + L++++++ DG + + DC +S +S I Sbjct: 5 VIQKVWQIVEPITEELKLELVDVEYVKEGAHWYLRVYIDK-DGGVDIDDCASVSHQLSNI 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD +N+I Y LEVSSPGI+RP+ ++ D+ ++ G +V + G + G Sbjct: 64 LDSKNLIPQAYMLEVSSPGIERPLSKREDYDKYIGKLVRVHTSEQFLGYTQFSGYLKGLL 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + LE E + AI + + A L Sbjct: 124 DEKVILEYEG--------QEAAIPINIVEKAHL 148 >gi|259585805|sp|Q0AFJ1|RIMP_NITEC RecName: Full=Ribosome maturation factor rimP Length = 143 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 43/150 (28%), Positives = 77/150 (51%), Gaps = 11/150 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + +++P I M + V I LL++FV++ DG +TL DC +S + +L VEN Sbjct: 3 LFELLEPTIAGMGYELVDIEQSAPGR-LLRVFVDKKDGAITLADCVAVSNHLGQLLAVEN 61 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I + RLEVSSPG+DRP+ +++DF+R+ G + + ++ ++ +G + + Sbjct: 62 I--DYNRLEVSSPGLDRPLKKRADFVRFVGESIRIRLRIALQGQRNFVGTLTEVGDDALM 119 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L + + + +L ARLI Sbjct: 120 LNVDGKL--------LQFELKNLEKARLIP 141 >gi|313623921|gb|EFR94029.1| conserved hypothetical protein [Listeria innocua FSL J1-023] Length = 155 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 72/156 (46%), Gaps = 6/156 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 + + +++ P+ +E+ V I+ +E L+IF+++ DG + + +C +S+ +S Sbjct: 2 SKVLEQVEAIVAPITDELQLELVDIAFEKEGPNWFLRIFIDK-DGGVDIDECAAVSEKVS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +D + I +Y LEVSSPG +RP+ ++ DF G V ++ G ++ Sbjct: 61 EKMDESDPITQNYFLEVSSPGAERPLKKEQDFENAVGKYVHVTSYEPIDGRKMWEGTLVS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 T + + K E I D + ARL Sbjct: 121 YDGTILVITITDKTRKITCE----IPKDKVAKARLA 152 >gi|160871632|ref|ZP_02061764.1| 15 kDa protein [Rickettsiella grylli] gi|159120431|gb|EDP45769.1| 15 kDa protein [Rickettsiella grylli] Length = 153 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 43/151 (28%), Positives = 85/151 (56%), Gaps = 10/151 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I + + P IE + + L E L+I+++ + +TL DCE +S+ + +LDVE Sbjct: 8 IEARLSPTIEALGYELWACVYLREGQKNRLRIYIDS-EKGITLSDCERVSRQVGALLDVE 66 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 ++++GHY LEVSSPG+DRP++++ F R+ G+ + + +++K G + T +G Sbjct: 67 DLLQGHYHLEVSSPGLDRPLIKEDHFQRYVGYPIHVFLQSPIDNQRKFKGLLQSTRASGI 126 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L +E + + +++D++L A ++ Sbjct: 127 VLNREGK--------EFVLTWDNILHANVLP 149 >gi|241662812|ref|YP_002981172.1| hypothetical protein Rpic12D_1208 [Ralstonia pickettii 12D] gi|309782265|ref|ZP_07676993.1| hypothetical protein HMPREF1004_03620 [Ralstonia sp. 5_7_47FAA] gi|240864839|gb|ACS62500.1| protein of unknown function DUF150 [Ralstonia pickettii 12D] gi|308918958|gb|EFP64627.1| hypothetical protein HMPREF1004_03620 [Ralstonia sp. 5_7_47FAA] Length = 162 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 71/151 (47%), Gaps = 4/151 (2%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I+ + M + V++ LL++++++ + + + DCE++S ++ + +VE Sbjct: 2 HLTDLIEKTLTAMGYELVEVERAPAG--LLRVYIDQAENGVVIEDCEKVSHQLTRVFEVE 59 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 N+ + RLEVSSPG+DRP+ +DF R+ G + L ++ G I + Sbjct: 60 NV--NYERLEVSSPGLDRPLRTLADFTRFAGLEAKVTLRLPVNGQKNFTGIIQAPTGEPG 117 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E + + L ARL+ Sbjct: 118 QERIGLEFEGKEGPALLEFTLSELDRARLVP 148 >gi|187928208|ref|YP_001898695.1| hypothetical protein Rpic_1115 [Ralstonia pickettii 12J] gi|226696216|sp|B2UAA1|RIMP_RALPJ RecName: Full=Ribosome maturation factor rimP gi|187725098|gb|ACD26263.1| protein of unknown function DUF150 [Ralstonia pickettii 12J] Length = 162 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 71/151 (47%), Gaps = 4/151 (2%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I+ + M + V++ LL++++++ + + + DCE++S ++ + +VE Sbjct: 2 HLTDLIEKTLTAMGYELVEVERAPAG--LLRVYIDQAENGVVIEDCEKVSHQLTRVFEVE 59 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 N+ + RLEVSSPG+DRP+ +DF R+ G + L ++ G I + Sbjct: 60 NV--NYERLEVSSPGLDRPLRTLADFTRFAGLEAKVTLRLPVDGQKNFTGIIQAPTGEPG 117 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E + + L ARL+ Sbjct: 118 QERIGLEFEGKEGPALLGFTLSELDRARLVP 148 >gi|148825865|ref|YP_001290618.1| hypothetical protein CGSHiEE_04150 [Haemophilus influenzae PittEE] gi|229846822|ref|ZP_04466929.1| hypothetical protein CGSHi7P49H1_02333 [Haemophilus influenzae 7P49H1] gi|167012908|sp|A5UBT4|RIMP_HAEIE RecName: Full=Ribosome maturation factor rimP gi|148716025|gb|ABQ98235.1| hypothetical protein CGSHiEE_04150 [Haemophilus influenzae PittEE] gi|229810311|gb|EEP46030.1| hypothetical protein CGSHi7P49H1_02333 [Haemophilus influenzae 7P49H1] gi|309973010|gb|ADO96211.1| 30S ribosomal maturation protein RimP [Haemophilus influenzae R2846] Length = 151 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 79/154 (51%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ ++Q +E++ I + +++F+++ DG +T+ DC ++S+ +S I Sbjct: 4 LEQNLQEMLQDAVEDLGCELWGIECQRMGRFMTVRLFIDK-DGGVTVDDCADVSRQVSAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ F R+ G +A + + +++K GK+ Sbjct: 63 LDVEDPIADKYNLEVSSPGLDRPLFTLPQFERYIGQDIAVHLRIPVMERRKWQGKLERIE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + L + + + + F ++ A ++ Sbjct: 123 KDMITLIVDDQEQILV--------FGNIQKANVV 148 >gi|90961544|ref|YP_535460.1| hypothetical protein LSL_0568 [Lactobacillus salivarius UCC118] gi|227890632|ref|ZP_04008437.1| protein of hypothetical function DUF150 [Lactobacillus salivarius ATCC 11741] gi|301300280|ref|ZP_07206489.1| conserved hypothetical protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|122449172|sp|Q1WUF8|RIMP_LACS1 RecName: Full=Ribosome maturation factor rimP gi|90820738|gb|ABD99377.1| Conserved hypothetical protein [Lactobacillus salivarius UCC118] gi|227867570|gb|EEJ74991.1| protein of hypothetical function DUF150 [Lactobacillus salivarius ATCC 11741] gi|300852121|gb|EFK79796.1| conserved hypothetical protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 157 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 73/158 (46%), Gaps = 8/158 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + +++++ P+++E F V + ++ K+ L++++++ + + + +C +S +S Sbjct: 2 SSVVETVTNLVTPILDENHFELVDVEFVKEGKSWYLRVYIDKPN-GINIEECALVSDKLS 60 Query: 78 PILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + I Y LEVSSPG +RP+ ++ D+ R + + + ++ G + Sbjct: 61 EKLDSCDPDPIPQAYYLEVSSPGAERPLKKEKDYERALNKYIHISLYQAIDGQKVYEGTM 120 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + ++ LE + + + ARL Sbjct: 121 VDLNKETLTLEY----RVKTRTVTKTFDRNKIAKARLA 154 >gi|302392349|ref|YP_003828169.1| hypothetical protein Acear_1598 [Acetohalobium arabaticum DSM 5501] gi|302204426|gb|ADL13104.1| protein of unknown function DUF150 [Acetohalobium arabaticum DSM 5501] Length = 153 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 82/159 (51%), Gaps = 9/159 (5%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQA 75 +A I + +P++E+ V +E + +++FV++ + +TL DC+++S+ Sbjct: 1 MGQKIADYIFDLARPIVEDHGLELVDTEYQKEGQDWTVRVFVDKPE-GVTLDDCQKISRE 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 IS LD+E+ IE Y LEVSSPG+DRP+ + DF R+ GH++ ++ G++ Sbjct: 60 ISDRLDIEDPIEKSYILEVSSPGLDRPLKDEEDFKRFTGHLIDVSTYAPVNGEKSFTGEL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + L+ + + + IS D + A L + Sbjct: 120 LEIIDDKVKLKLDN-------DDVVEISRDKIAKANLAL 151 >gi|296285013|ref|ZP_06863011.1| hypothetical protein CbatJ_15405 [Citromicrobium bathyomarinum JL354] Length = 188 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 51/184 (27%), Positives = 85/184 (46%), Gaps = 19/184 (10%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLL----EEKNLLLQIFVERDDGN-MTLRDCEELS 73 M ++ +I+P + + F V++ ++ + LQI E + + C LS Sbjct: 1 MADIARLTQIIEPEAQALGFELVRVKMMPSEAGDGTQALQIMAEDPATGQLVIEQCAALS 60 Query: 74 QAISPILDV-----ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 +A+S +D + +IEG Y LEVSSPGIDRP+ R DF W GH + + Sbjct: 61 RAVSAKIDALEEQGDVLIEGAYHLEVSSPGIDRPLTRTKDFSDWAGHEAKISMAKGYDGQ 120 Query: 129 QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS--LNNY 186 + G + G + K G + + D + SA+L++TDEL+ A+ L+ Sbjct: 121 RNYRGSLKGIEGDMVTITDRKAG-------DVELPRDQIHSAQLVLTDELIAATRPLDTT 173 Query: 187 GSYA 190 G+ Sbjct: 174 GAEE 177 >gi|224476388|ref|YP_002633994.1| hypothetical protein Sca_0900 [Staphylococcus carnosus subsp. carnosus TM300] gi|254807265|sp|B9DPF1|RIMP_STACT RecName: Full=Ribosome maturation factor rimP gi|222420995|emb|CAL27809.1| conserved hypothetical protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 155 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 74/154 (48%), Gaps = 6/154 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + I +IQPV+++++F V+I + K+ L+I +++ +G + L DC S+ IS Sbjct: 2 SKITEQIEEIIQPVLDDLNFELVEIEFTKEGKDHFLRISIDK-EGGVDLNDCTLASEKIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +++ E+ IE Y L+V+SPG +RP+ V + ++ +G + Sbjct: 61 EVMNEEDPIEQMYYLDVASPGAERPIKTDKALHDAVEQPVFVSLYAPIDGSKEWLGVLQS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 ++ + + + + ++ I + + AR Sbjct: 121 VTDDHIVI----KAQVKEKKKEVEIPRNKIAKAR 150 >gi|73662812|ref|YP_301593.1| hypothetical protein SSP1503 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|82582354|sp|Q49X50|RIMP_STAS1 RecName: Full=Ribosome maturation factor rimP gi|72495327|dbj|BAE18648.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 155 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 80/154 (51%), Gaps = 6/154 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + + ++IQPV+ +++F V++ + K+ L++ +++ +G + L DC S+ IS Sbjct: 2 SKITEQVETIIQPVLNDLNFELVEVEFTKEGKDHFLRVSIDK-EGGVDLNDCALASEKIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++D E+ I+ Y L+V+SPG +RP+ ++ DF V + ++ +G + Sbjct: 61 EVMDAEDPIQEMYYLDVASPGAERPIKKEKDFQNAITKPVFVSLYAPIEGSKEWLGILQS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 ET +E +++ + QI I + + AR Sbjct: 121 VDETNIVMEVKEKAKTK----QIEIPRNKIAKAR 150 >gi|30995436|ref|NP_439434.2| hypothetical protein HI1282 [Haemophilus influenzae Rd KW20] gi|145633249|ref|ZP_01788980.1| hypothetical protein CGSHi3655_03431 [Haemophilus influenzae 3655] gi|145634373|ref|ZP_01790083.1| hypothetical protein CGSHiAA_06269 [Haemophilus influenzae PittAA] gi|148827022|ref|YP_001291775.1| hypothetical protein CGSHiGG_01570 [Haemophilus influenzae PittGG] gi|229845093|ref|ZP_04465228.1| hypothetical protein CGSHi6P18H1_00035 [Haemophilus influenzae 6P18H1] gi|260581404|ref|ZP_05849218.1| conserved hypothetical protein [Haemophilus influenzae RdAW] gi|260582502|ref|ZP_05850293.1| conserved hypothetical protein [Haemophilus influenzae NT127] gi|329123361|ref|ZP_08251926.1| YhbC family protein [Haemophilus aegyptius ATCC 11116] gi|34223728|sp|P45138|RIMP_HAEIN RecName: Full=Ribosome maturation factor rimP gi|166979796|sp|A5UF36|RIMP_HAEIG RecName: Full=Ribosome maturation factor rimP gi|144986095|gb|EDJ92685.1| hypothetical protein CGSHi3655_03431 [Haemophilus influenzae 3655] gi|145268353|gb|EDK08347.1| hypothetical protein CGSHiAA_06269 [Haemophilus influenzae PittAA] gi|148718264|gb|ABQ99391.1| hypothetical protein CGSHiGG_01570 [Haemophilus influenzae PittGG] gi|229811929|gb|EEP47623.1| hypothetical protein CGSHi6P18H1_00035 [Haemophilus influenzae 6P18H1] gi|260091946|gb|EEW75895.1| conserved hypothetical protein [Haemophilus influenzae RdAW] gi|260094482|gb|EEW78379.1| conserved hypothetical protein [Haemophilus influenzae NT127] gi|327471361|gb|EGF16813.1| YhbC family protein [Haemophilus aegyptius ATCC 11116] Length = 151 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 79/154 (51%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ ++Q +E++ I + +++F+++ DG +T+ DC ++S+ +S I Sbjct: 4 LEQNLQEMLQDAVEDLGCELWGIECQRVGRFMTVRLFIDK-DGGVTVDDCADVSRQVSAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ F R+ G +A + + +++K GK+ Sbjct: 63 LDVEDPIADKYNLEVSSPGLDRPLFTLPQFERYIGQDIAVHLRIPVMERRKWQGKLERIE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + L + + + + F ++ A ++ Sbjct: 123 KDMITLIVDDQEQILV--------FGNIQKANVV 148 >gi|299823035|ref|ZP_07054921.1| protein of hypothetical function DUF150 [Listeria grayi DSM 20601] gi|299816564|gb|EFI83802.1| protein of hypothetical function DUF150 [Listeria grayi DSM 20601] Length = 155 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 71/156 (45%), Gaps = 6/156 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + + +++ P+ EE+ V I+ + KN L++FV+R G + + +C +S+ +S Sbjct: 2 SKVTDQVEAIVLPITEELGVELVDIAYEKEGKNWFLRVFVDRP-GGIDIDECAAVSEKLS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +D ++ I +Y LEVSSPG +RP+ ++ DF G V ++ G + Sbjct: 61 EKMDEQDPISENYFLEVSSPGAERPLKKEKDFENAVGKYVHVTSYEPIDSRKMWEGTLEA 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + + + + + ARL Sbjct: 121 YDGEYLTITVKDKTRTLTCK----VPKEKVAKARLA 152 >gi|153814922|ref|ZP_01967590.1| hypothetical protein RUMTOR_01137 [Ruminococcus torques ATCC 27756] gi|317500434|ref|ZP_07958658.1| ribosome maturation factor rimP [Lachnospiraceae bacterium 8_1_57FAA] gi|331089559|ref|ZP_08338458.1| ribosome maturation factor rimP [Lachnospiraceae bacterium 3_1_46FAA] gi|145847953|gb|EDK24871.1| hypothetical protein RUMTOR_01137 [Ruminococcus torques ATCC 27756] gi|316898189|gb|EFV20236.1| ribosome maturation factor rimP [Lachnospiraceae bacterium 8_1_57FAA] gi|330404927|gb|EGG84465.1| ribosome maturation factor rimP [Lachnospiraceae bacterium 3_1_46FAA] Length = 155 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 71/142 (50%), Gaps = 2/142 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPIL 80 +++P++ + F V + ++E L+ ++++ G +T+ DCE +S+ S IL Sbjct: 8 EQKTEELLEPIVSALGFELVDVEYVKEAGTWYLRAYIDKP-GGITVDDCEAVSRKFSDIL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D ++ I Y EVSSPG+ RP+ ++ DF R G V + +++ G + G E Sbjct: 67 DEKDYIPDSYVFEVSSPGLGRPLKKEKDFKRSIGEEVEIRTYRAIDRQKEFTGILKGFDE 126 Query: 141 TGFFLEKEKRGEKDMNELQIAI 162 + E E+ + +IA+ Sbjct: 127 NTVTIIYEDETEQVFDRAEIAL 148 >gi|256830178|ref|YP_003158906.1| hypothetical protein Dbac_2411 [Desulfomicrobium baculatum DSM 4028] gi|256579354|gb|ACU90490.1| protein of unknown function DUF150 [Desulfomicrobium baculatum DSM 4028] Length = 162 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 71/161 (44%), Gaps = 12/161 (7%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLL---EEKNLLLQIFVERDDGNMTLRDCEEL 72 + + ++ P+ E I LL ++ +++++++ + + +C E+ Sbjct: 1 MDKNEIHARLMEMVTPLCEARDLEVWGIELLFAAGGRHKIVRVYLDS-QQGVGIDECSEV 59 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+ +S LDVE+II G + LEVSSPG++RP L + G V + ++ Sbjct: 60 SRHLSLALDVEDIIPGAFNLEVSSPGLERPFFSTEQMLPYVGQTVRIRLDNPLEGRKNFK 119 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 G+++ F L + +++D + A L+ Sbjct: 120 GRLLSIESPMFTLSDD--------STTFELNWDDVGKANLV 152 >gi|34496915|ref|NP_901130.1| hypothetical protein CV_1460 [Chromobacterium violaceum ATCC 12472] gi|51316759|sp|Q7NY15|RIMP_CHRVO RecName: Full=Ribosome maturation factor rimP gi|34102771|gb|AAQ59135.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 141 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 77/149 (51%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 D+ +++ + + + V + ++F+++ G +T+ DC +S + + VE Sbjct: 2 DVRLLLENTLPGLGYELVDFEMTPGGG--FRVFIDKP-GGITVEDCVLVSNHFTRLFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 N+ + RLEVSSPG+DRP+ +++DF+R++G + + + ++K G++ G + Sbjct: 59 NV--DYERLEVSSPGLDRPLKKEADFVRFSGQLAKIKTRMPIEQQKKFTGRLAGVEDGSV 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 L+ + R + I F ++ ARL Sbjct: 117 KLDVDGRI--------VEIPFANIDKARL 137 >gi|217970107|ref|YP_002355341.1| hypothetical protein Tmz1t_1690 [Thauera sp. MZ1T] gi|217507434|gb|ACK54445.1| protein of unknown function DUF150 [Thauera sp. MZ1T] Length = 144 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 43/154 (27%), Positives = 79/154 (51%), Gaps = 12/154 (7%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + D+ +I+ V+ + + V I K LL++F++ + +T+ DC +S + + Sbjct: 1 MRADVEGLIEQVVTGLGYELVDIEFSP-KGRLLRVFLD-IERGITVDDCATVSNQLQRVF 58 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 +VEN+ + RLEVSSPG+DRP+ + +DF R+ G + L G+++ +G I + Sbjct: 59 EVENV--DYDRLEVSSPGLDRPLKKLADFERFAGEQAQVRLSLPIGNQRNFVGVIERVQD 116 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L EK ++ + FD + ARL+ Sbjct: 117 GAVALRTEK--------GEVLLPFDDIEKARLVP 142 >gi|145637798|ref|ZP_01793447.1| hypothetical protein CGSHiHH_01594 [Haemophilus influenzae PittHH] gi|145268991|gb|EDK08945.1| hypothetical protein CGSHiHH_01594 [Haemophilus influenzae PittHH] Length = 151 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 78/154 (50%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ ++Q +E++ I + +++F+++ DG +T+ DC ++S+ +S I Sbjct: 4 LEQNLQEMLQDAVEDLGCELWGIECQRVGRFMTVRLFIDK-DGGVTVDDCADVSRQVSAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ F R+ G +A + + +++K GK+ Sbjct: 63 LDVEDPIADKYNLEVSSPGLDRPLFTLPQFERYIGQDIAVHLRIPVMERRKWQGKLERIE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + L + + + F ++ A ++ Sbjct: 123 KDMITLIV--------GDQEQILVFGNIQKANIV 148 >gi|327441014|dbj|BAK17379.1| uncharacterized protein [Solibacillus silvestris StLB046] Length = 161 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 77/158 (48%), Gaps = 5/158 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 + I ++ P++EE+ V I ++E L+I+V+ +G + + C ++S+ +S Sbjct: 2 SKVTSIIEELVTPIVEELDLELVDIEFVKEGRDWFLRIYVDTPEGGIDILQCAQVSERLS 61 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + IE +Y LEVSSPG +RP+ ++ DF + G + + D ++ G + Sbjct: 62 EKLDENDPIEQNYYLEVSSPGAERPLKKQQDFEKAIGKYIYVKTYEPVKDLKEFYGYLRA 121 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 ++ +E ++ + I + + ARL + Sbjct: 122 YTDEFLEMEF----RIKTRKVTVQIEKEKIAQARLAID 155 >gi|251797401|ref|YP_003012132.1| hypothetical protein Pjdr2_3411 [Paenibacillus sp. JDR-2] gi|247545027|gb|ACT02046.1| protein of unknown function DUF150 [Paenibacillus sp. JDR-2] Length = 153 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 71/159 (44%), Gaps = 10/159 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQ 74 + + +++ P ++ F V I ++E + L++FV++ +G + + +C ++S+ Sbjct: 1 MSTSKIKTVVEAMVTPFLDSNGFELVDIEYVKEGSNYFLRVFVDK-EGGIDIDECGKVSE 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 +S LD + + Y LEVSSPG +RP+ + D + G V ++ G+ Sbjct: 60 FLSEELDKNDPVSDAYFLEVSSPGAERPLKKPDDVRKAVGKHVYITTYEPIDGSKEFEGQ 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + ++ + + I + + SARL Sbjct: 120 LTAFDGEQATVKI--------GKKEHVIPYAKVASARLA 150 >gi|53719534|ref|YP_108520.1| hypothetical protein BPSL1920 [Burkholderia pseudomallei K96243] gi|53724823|ref|YP_102762.1| hypothetical protein BMA1063 [Burkholderia mallei ATCC 23344] gi|67641343|ref|ZP_00440123.1| conserved hypothetical protein [Burkholderia mallei GB8 horse 4] gi|83720636|ref|YP_443083.1| hypothetical protein BTH_I2566 [Burkholderia thailandensis E264] gi|121601076|ref|YP_992839.1| hypothetical protein BMASAVP1_A1509 [Burkholderia mallei SAVP1] gi|124386071|ref|YP_001026182.1| hypothetical protein BMA10229_A0177 [Burkholderia mallei NCTC 10229] gi|126439674|ref|YP_001058777.1| hypothetical protein BURPS668_1738 [Burkholderia pseudomallei 668] gi|126448900|ref|YP_001080548.1| hypothetical protein BMA10247_0989 [Burkholderia mallei NCTC 10247] gi|126452322|ref|YP_001066029.1| hypothetical protein BURPS1106A_1760 [Burkholderia pseudomallei 1106a] gi|134282401|ref|ZP_01769106.1| conserved hypothetical protein [Burkholderia pseudomallei 305] gi|167004350|ref|ZP_02270108.1| conserved hypothetical protein [Burkholderia mallei PRL-20] gi|167562941|ref|ZP_02355857.1| hypothetical protein BoklE_10300 [Burkholderia oklahomensis EO147] gi|167582088|ref|ZP_02374962.1| hypothetical protein BthaT_28352 [Burkholderia thailandensis TXDOH] gi|167620249|ref|ZP_02388880.1| hypothetical protein BthaB_28340 [Burkholderia thailandensis Bt4] gi|167719820|ref|ZP_02403056.1| hypothetical protein BpseD_12440 [Burkholderia pseudomallei DM98] gi|167738821|ref|ZP_02411595.1| hypothetical protein Bpse14_12188 [Burkholderia pseudomallei 14] gi|167816042|ref|ZP_02447722.1| hypothetical protein Bpse9_12932 [Burkholderia pseudomallei 91] gi|167824418|ref|ZP_02455889.1| hypothetical protein Bpseu9_12158 [Burkholderia pseudomallei 9] gi|167836823|ref|ZP_02463706.1| hypothetical protein Bpse38_10070 [Burkholderia thailandensis MSMB43] gi|167845950|ref|ZP_02471458.1| hypothetical protein BpseB_11725 [Burkholderia pseudomallei B7210] gi|167894527|ref|ZP_02481929.1| hypothetical protein Bpse7_12319 [Burkholderia pseudomallei 7894] gi|167902932|ref|ZP_02490137.1| hypothetical protein BpseN_11790 [Burkholderia pseudomallei NCTC 13177] gi|167919192|ref|ZP_02506283.1| hypothetical protein BpseBC_11610 [Burkholderia pseudomallei BCC215] gi|217423492|ref|ZP_03454993.1| conserved hypothetical protein [Burkholderia pseudomallei 576] gi|226199708|ref|ZP_03795261.1| conserved hypothetical protein [Burkholderia pseudomallei Pakistan 9] gi|237812040|ref|YP_002896491.1| hypothetical protein GBP346_A1782 [Burkholderia pseudomallei MSHR346] gi|242317839|ref|ZP_04816855.1| conserved hypothetical protein [Burkholderia pseudomallei 1106b] gi|254178698|ref|ZP_04885353.1| conserved hypothetical protein [Burkholderia mallei ATCC 10399] gi|254179982|ref|ZP_04886581.1| conserved hypothetical protein [Burkholderia pseudomallei 1655] gi|254188606|ref|ZP_04895117.1| conserved hypothetical protein [Burkholderia pseudomallei Pasteur 52237] gi|254197760|ref|ZP_04904182.1| conserved hypothetical protein [Burkholderia pseudomallei S13] gi|254199710|ref|ZP_04906076.1| conserved hypothetical protein [Burkholderia mallei FMH] gi|254206032|ref|ZP_04912384.1| conserved hypothetical protein [Burkholderia mallei JHU] gi|254297817|ref|ZP_04965270.1| conserved hypothetical protein [Burkholderia pseudomallei 406e] gi|254358406|ref|ZP_04974679.1| conserved hypothetical protein [Burkholderia mallei 2002721280] gi|257139312|ref|ZP_05587574.1| hypothetical protein BthaA_08929 [Burkholderia thailandensis E264] gi|81379645|sp|Q63TP6|RIMP_BURPS RecName: Full=Ribosome maturation factor rimP gi|81605125|sp|Q62KK7|RIMP_BURMA RecName: Full=Ribosome maturation factor rimP gi|123536573|sp|Q2SVG6|RIMP_BURTA RecName: Full=Ribosome maturation factor rimP gi|166980214|sp|A3N8V6|RIMP_BURP6 RecName: Full=Ribosome maturation factor rimP gi|166980223|sp|A3NUK8|RIMP_BURP0 RecName: Full=Ribosome maturation factor rimP gi|166987486|sp|A2S2L3|RIMP_BURM9 RecName: Full=Ribosome maturation factor rimP gi|166990761|sp|A1V3N6|RIMP_BURMS RecName: Full=Ribosome maturation factor rimP gi|166990846|sp|A3MJW2|RIMP_BURM7 RecName: Full=Ribosome maturation factor rimP gi|52209948|emb|CAH35920.1| conserved hypothetical protein [Burkholderia pseudomallei K96243] gi|52428246|gb|AAU48839.1| conserved hypothetical protein [Burkholderia mallei ATCC 23344] gi|83654461|gb|ABC38524.1| Uncharacterized BCR, YhbC family COG0779 superfamily [Burkholderia thailandensis E264] gi|121229886|gb|ABM52404.1| conserved hypothetical protein [Burkholderia mallei SAVP1] gi|124294091|gb|ABN03360.1| conserved hypothetical protein [Burkholderia mallei NCTC 10229] gi|126219167|gb|ABN82673.1| conserved hypothetical protein [Burkholderia pseudomallei 668] gi|126225964|gb|ABN89504.1| conserved hypothetical protein [Burkholderia pseudomallei 1106a] gi|126241770|gb|ABO04863.1| conserved hypothetical protein [Burkholderia mallei NCTC 10247] gi|134246439|gb|EBA46528.1| conserved hypothetical protein [Burkholderia pseudomallei 305] gi|147749306|gb|EDK56380.1| conserved hypothetical protein [Burkholderia mallei FMH] gi|147753475|gb|EDK60540.1| conserved hypothetical protein [Burkholderia mallei JHU] gi|148027533|gb|EDK85554.1| conserved hypothetical protein [Burkholderia mallei 2002721280] gi|157806885|gb|EDO84055.1| conserved hypothetical protein [Burkholderia pseudomallei 406e] gi|157936285|gb|EDO91955.1| conserved hypothetical protein [Burkholderia pseudomallei Pasteur 52237] gi|160699737|gb|EDP89707.1| conserved hypothetical protein [Burkholderia mallei ATCC 10399] gi|169654501|gb|EDS87194.1| conserved hypothetical protein [Burkholderia pseudomallei S13] gi|184210522|gb|EDU07565.1| conserved hypothetical protein [Burkholderia pseudomallei 1655] gi|217393350|gb|EEC33371.1| conserved hypothetical protein [Burkholderia pseudomallei 576] gi|225928294|gb|EEH24328.1| conserved hypothetical protein [Burkholderia pseudomallei Pakistan 9] gi|237503609|gb|ACQ95927.1| conserved hypothetical protein [Burkholderia pseudomallei MSHR346] gi|238522260|gb|EEP85705.1| conserved hypothetical protein [Burkholderia mallei GB8 horse 4] gi|242141078|gb|EES27480.1| conserved hypothetical protein [Burkholderia pseudomallei 1106b] gi|243060318|gb|EES42504.1| conserved hypothetical protein [Burkholderia mallei PRL-20] Length = 153 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 72/151 (47%), Gaps = 8/151 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I+ + + + V + ++ +++++ +T+ DCE++++ + +L VE Sbjct: 2 QLTELIETTVTGLGYELVDLERTGRG--MVCVYIDQP-AGITIDDCEKVTRQLQHVLTVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DRP+ + +DF R+ G + ++ G + + Sbjct: 59 NI--DYERLEVSSPGLDRPLKKLADFTRFAGSEAVITLKKPLDGRKTYRGILHAPNGETI 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 LE E K + + + ARLI Sbjct: 117 GLEFE---RKKGEAAMLDFTLADIDKARLIP 144 >gi|167570130|ref|ZP_02363004.1| hypothetical protein BoklC_09816 [Burkholderia oklahomensis C6786] Length = 153 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 72/151 (47%), Gaps = 8/151 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I+ + + + V + ++ +++++ +T+ DCE++++ + +L VE Sbjct: 2 QLTELIETTVTGLGYELVDLERTGRG--MVCVYIDQP-AGITIDDCEKVTRQLQHVLTVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DRP+ + +DF R+ G + ++ G + + Sbjct: 59 NI--DYERLEVSSPGLDRPLKKLADFTRFAGSEAVITLKKPLDGRKTYRGILYAPNGETI 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 LE E K + + + ARLI Sbjct: 117 GLEFE---RKKGEAAMLDFTLADIDKARLIP 144 >gi|302389799|ref|YP_003825620.1| protein of unknown function DUF150 [Thermosediminibacter oceani DSM 16646] gi|302200427|gb|ADL07997.1| protein of unknown function DUF150 [Thermosediminibacter oceani DSM 16646] Length = 162 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 42/160 (26%), Positives = 79/160 (49%), Gaps = 10/160 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQ 74 + + + + VI + F V + ++E + L+ ++++ G +TL DC+E+S+ Sbjct: 1 MQKSQILKKVWDIGERVIHDRGFELVDVEFVQEAGSWYLRYYIDKP-GGITLDDCQEVSE 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 IS LD+E+ I Y LEVSSPG++RP+ ++ DFL++ G V ++ K+ G Sbjct: 60 EISRRLDIEDPIPHSYILEVSSPGVERPLKKEKDFLKYIGSEVEIKVFEPIAGKKAFTGT 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ + L + I I + + SA+L Sbjct: 120 LIDYKDGSVVLRVD--------SSIINIPHEKISSAKLKF 151 >gi|268601717|ref|ZP_06135884.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|291043425|ref|ZP_06569146.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|268585848|gb|EEZ50524.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|291012661|gb|EFE04646.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] Length = 149 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 76/149 (51%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++++ + + + L + L++F+++ +G +T+ DC +S +S + VE Sbjct: 8 DIQTILEKTLPGLGYELADFELAAQG--TLRVFIDK-EGGITVEDCATVSNHLSRVFMVE 64 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +I G+ LE+SSPG+DRP+ + +DF+R+ G + L G ++ IGKI G Sbjct: 65 DI--GYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIGGQKNFIGKIEGCENDTV 122 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + + I ++ ARL Sbjct: 123 TVSFDGK--------TVQIELGNIDKARL 143 >gi|167625061|ref|YP_001675355.1| hypothetical protein Shal_3149 [Shewanella halifaxensis HAW-EB4] gi|189039835|sp|B0TQA4|RIMP_SHEHH RecName: Full=Ribosome maturation factor rimP gi|167355083|gb|ABZ77696.1| protein of unknown function DUF150 [Shewanella halifaxensis HAW-EB4] Length = 151 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 72/154 (46%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + +++ +E + + + + K+ +L+++++ + + + DC E S+ +S + Sbjct: 4 LERKLVEMLKAPVEALGHQLWGLEYIQAGKHSILRLYIDN-EKGIFIEDCAEASRQVSAV 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG++R + + + G V ++ + + L G + G Sbjct: 63 LDVEDPITSEYTLEVSSPGVERLLFTAEQYKAYIGETVKVQLTMPVAGSRNLKGTVTGVD 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + ++ ++ D++ LI Sbjct: 123 GQMLNLSVDG--------NELIVALDNIRKGNLI 148 >gi|312869023|ref|ZP_07729200.1| conserved hypothetical protein [Lactobacillus oris PB013-T2-3] gi|311095449|gb|EFQ53716.1| conserved hypothetical protein [Lactobacillus oris PB013-T2-3] Length = 157 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 8/156 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + ++ ++ P+++E F I ++ K+ L++++++ DG +TL DC +S +S Sbjct: 4 VTETVTDLVTPILDEHHFYLYDIEFVKEGKSWYLRVYIDK-DGGITLDDCATVSDQLSEA 62 Query: 80 LD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + I Y LEVSSPG +RP+ ++D+ R H + + K+ G +M Sbjct: 63 LDNVEPDPIPQAYFLEVSSPGAERPLKNEADYQRAVNHYIHVSLYQQIAGKKVYEGTLME 122 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 S+ L+ + Q+ I + ARL Sbjct: 123 LSDKEMTLDFMDK----TRHRQVVIDRSKVAKARLA 154 >gi|323697470|ref|ZP_08109382.1| protein of unknown function DUF150 [Desulfovibrio sp. ND132] gi|323457402|gb|EGB13267.1| protein of unknown function DUF150 [Desulfovibrio desulfuricans ND132] Length = 152 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 70/153 (45%), Gaps = 10/153 (6%) Query: 22 AGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 +S +I+P +E + + ++ K +++I+++ G + + C E+S+ + +L Sbjct: 6 EEMLSDMIRPEVENLGYVFWGLASPSSGKKRVVRIYIDAP-GGVNIDQCAEVSRQVGLML 64 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 +VE++I G + LEVSSPG++RP + + G V + ++K G++ G Sbjct: 65 EVEDVIPGAFVLEVSSPGLERPFFAPAQLADYVGRKVDVLLFEPLDGRRKFKGELTGVEG 124 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + + + ++ L+ Sbjct: 125 DTVTVNVDD--------QTMNFDWTAIKKITLV 149 >gi|88812962|ref|ZP_01128205.1| hypothetical protein NB231_03777 [Nitrococcus mobilis Nb-231] gi|88789740|gb|EAR20864.1| hypothetical protein NB231_03777 [Nitrococcus mobilis Nb-231] Length = 150 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 82/153 (53%), Gaps = 10/153 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILD 81 ++ V++PV+ M + V I K+ LL+I++++ D +++ DC +S IS +LD Sbjct: 5 DTLTKVVEPVVAAMGYELVGIEYRPSKSQALLRIYIDKAD-GISVEDCALVSNQISGVLD 63 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE+ + G Y LEVSSPG+ RP+ + SD+ R+ G +V I + ++++ G + G Sbjct: 64 VEDPLSGRYTLEVSSPGLRRPIFKASDYERFAGELVHIRIRGTLDGRRRIHGLLRGLRAD 123 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + N ++I++ + + A L + Sbjct: 124 CVIV--------VENGIEISVPLNRVDKANLEL 148 >gi|332981611|ref|YP_004463052.1| hypothetical protein Mahau_1032 [Mahella australiensis 50-1 BON] gi|332699289|gb|AEE96230.1| protein of unknown function DUF150 [Mahella australiensis 50-1 BON] Length = 154 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 43/148 (29%), Positives = 71/148 (47%), Gaps = 2/148 (1%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQ 74 +A + ++ P++E+ F V I +E L+IF+++ D +T+ DCE +S+ Sbjct: 1 MAKAKVADTVRQLVMPILEDNGFELVDIEFKKEGAEQYLRIFIDKPD-GITIDDCELVSR 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 +S LD + I Y LEVSSPGIDRP+ + DF R G V ++ S + G Sbjct: 60 HLSDKLDEIDPIPQAYILEVSSPGIDRPLKTQRDFERSMGKQVEIKLYKQSMGHKTYKGT 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAI 162 ++G + +E IA+ Sbjct: 120 LVGFDDERVEIETVDNQHLSFGIKDIAL 147 >gi|145630837|ref|ZP_01786615.1| hypothetical protein CGSHi22421_10572 [Haemophilus influenzae R3021] gi|144983719|gb|EDJ91179.1| hypothetical protein CGSHi22421_10572 [Haemophilus influenzae R3021] Length = 151 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 79/154 (51%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ ++Q +E++ I + +++F+++ DG +T+ DC ++S+ +S I Sbjct: 4 LEQNLQEMLQDAVEDLGCELWGIECQRVGRFITVRLFIDK-DGGVTVDDCADVSRQVSAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ F R+ G +A + + +++K GK+ Sbjct: 63 LDVEDPIADKYNLEVSSPGLDRPLFTLPQFERYIGQDIAVHLRIPVMERRKWQGKLERIE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + L + + + + F ++ A ++ Sbjct: 123 KDMITLIVDDQEQILV--------FGNIQKANVV 148 >gi|84624710|ref|YP_452082.1| hypothetical protein XOO_3053 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|161898973|ref|YP_201860.2| hypothetical protein XOO3221 [Xanthomonas oryzae pv. oryzae KACC10331] gi|91208349|sp|Q5GXU6|RIMP_XANOR RecName: Full=Ribosome maturation factor rimP gi|91208413|sp|Q2P0W9|RIMP_XANOM RecName: Full=Ribosome maturation factor rimP gi|259645271|sp|B2SVK5|RIMP_XANOP RecName: Full=Ribosome maturation factor rimP gi|84368650|dbj|BAE69808.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 196 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 39/160 (24%), Positives = 78/160 (48%), Gaps = 12/160 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVE-----RDDGNMTLRDCEELSQA 75 A +I++++ P ++ + + + L L+++++ + + + + DCE +S+ Sbjct: 5 ATEIANLLSPTVDSLGVELLGVEYLPAPGGATLRLYIDVPLAEQPERVINVDDCERVSRE 64 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LDVE+ I GHY LEVSSPG+DRP+ F R G + L+ +++ G+I Sbjct: 65 VSAQLDVEDPISGHYTLEVSSPGVDRPLFTLEQFARHAGESTKIVLKLAQDGRRRFQGEI 124 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + ++ + I FD++ AR++ Sbjct: 125 LRIDAEA------GAVVFAIDGKDVQIGFDNIDKARILPD 158 >gi|69246861|ref|ZP_00604153.1| Protein of unknown function DUF150 [Enterococcus faecium DO] gi|257878527|ref|ZP_05658180.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257882945|ref|ZP_05662598.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|257884341|ref|ZP_05663994.1| conserved hypothetical protein [Enterococcus faecium 1,231,501] gi|257889276|ref|ZP_05668929.1| conserved hypothetical protein [Enterococcus faecium 1,231,410] gi|257894714|ref|ZP_05674367.1| conserved hypothetical protein [Enterococcus faecium 1,231,408] gi|258615948|ref|ZP_05713718.1| hypothetical protein EfaeD_09568 [Enterococcus faecium DO] gi|260560112|ref|ZP_05832290.1| conserved hypothetical protein [Enterococcus faecium C68] gi|261207400|ref|ZP_05922086.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289566678|ref|ZP_06447095.1| conserved hypothetical protein [Enterococcus faecium D344SRF] gi|293556648|ref|ZP_06675213.1| hypothetical protein EfmE1039_1955 [Enterococcus faecium E1039] gi|293560201|ref|ZP_06676703.1| hypothetical protein EfmE1162_0858 [Enterococcus faecium E1162] gi|293567722|ref|ZP_06679064.1| hypothetical protein EfmE1071_0525 [Enterococcus faecium E1071] gi|294613938|ref|ZP_06693873.1| hypothetical protein EfmE1636_0063 [Enterococcus faecium E1636] gi|294618724|ref|ZP_06698256.1| hypothetical protein EfmE1679_1593 [Enterococcus faecium E1679] gi|294620762|ref|ZP_06699969.1| hypothetical protein EfmU0317_0176 [Enterococcus faecium U0317] gi|68195042|gb|EAN09505.1| Protein of unknown function DUF150 [Enterococcus faecium DO] gi|257812755|gb|EEV41513.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257818603|gb|EEV45931.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|257820179|gb|EEV47327.1| conserved hypothetical protein [Enterococcus faecium 1,231,501] gi|257825636|gb|EEV52262.1| conserved hypothetical protein [Enterococcus faecium 1,231,410] gi|257831093|gb|EEV57700.1| conserved hypothetical protein [Enterococcus faecium 1,231,408] gi|260073947|gb|EEW62271.1| conserved hypothetical protein [Enterococcus faecium C68] gi|260078291|gb|EEW65996.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289161537|gb|EFD09420.1| conserved hypothetical protein [Enterococcus faecium D344SRF] gi|291589565|gb|EFF21371.1| hypothetical protein EfmE1071_0525 [Enterococcus faecium E1071] gi|291593213|gb|EFF24787.1| hypothetical protein EfmE1636_0063 [Enterococcus faecium E1636] gi|291595037|gb|EFF26382.1| hypothetical protein EfmE1679_1593 [Enterococcus faecium E1679] gi|291599742|gb|EFF30752.1| hypothetical protein EfmU0317_0176 [Enterococcus faecium U0317] gi|291601183|gb|EFF31470.1| hypothetical protein EfmE1039_1955 [Enterococcus faecium E1039] gi|291605873|gb|EFF35305.1| hypothetical protein EfmE1162_0858 [Enterococcus faecium E1162] Length = 157 Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 77/158 (48%), Gaps = 8/158 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + ++ ++ P+++E +F V++ ++ K+ L++F+++ +G + + +C +S+ +S Sbjct: 2 SSVVETVTEMVTPILDEQNFELVEVEFVKEGKSWFLRVFIDK-EGGIDIEECAFVSEKLS 60 Query: 78 PILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + I Y LEVSSPG +RP+ ++SD+ + G V + +++ G + Sbjct: 61 EKLDAADPDPIPQAYFLEVSSPGAERPLKKESDYEKALGDYVHVSLYQPVDGEKQYEGFL 120 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L+ E ++ ++ ARL Sbjct: 121 QSFDAEQLTLKI----RIKTREKELTFDRKNIAKARLA 154 >gi|315658445|ref|ZP_07911317.1| protein of hypothetical function DUF150 [Staphylococcus lugdunensis M23590] gi|315496774|gb|EFU85097.1| protein of hypothetical function DUF150 [Staphylococcus lugdunensis M23590] Length = 155 Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 85/154 (55%), Gaps = 6/154 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + ++ ++IQPV+E +++ V++ ++ K+ L++ +++ +G + L DC S+ IS Sbjct: 2 SKITEEVETLIQPVLEALNYELVEVEFVKEGKDHFLRVSIDK-EGGVDLNDCTLASEKIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++D + I+ Y L+V+SPG +RP+ ++ D+ R + + + ++ +G ++ Sbjct: 61 EVMDEHDPIKEMYYLDVASPGAERPIKKEQDYQRAIQQPIFVSLYAPIENNKEWLGILVE 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 + +E +++ +K QI+I + + AR Sbjct: 121 VTAETITMEVKEKAKKK----QISIPRNKIAKAR 150 >gi|17546006|ref|NP_519408.1| hypothetical protein RSc1287 [Ralstonia solanacearum GMI1000] gi|34222937|sp|Q8XZV8|RIMP_RALSO RecName: Full=Ribosome maturation factor rimP gi|17428301|emb|CAD14989.1| conserved hypothetical protein [Ralstonia solanacearum GMI1000] Length = 162 Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 70/151 (46%), Gaps = 4/151 (2%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I+ + M + V++ LL++++++ + + + DCE++S ++ + +VE Sbjct: 2 HLTDLIEKTLTAMGYELVEVERAPAG--LLRVYIDQAETGIVIEDCEKVSHQLTRVFEVE 59 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 N+ + RLEVSSPG+DRP+ DF R+ G + L ++ G + + Sbjct: 60 NV--NYERLEVSSPGLDRPLRTLVDFARFAGLEAKVTLRLPVNGQKNFTGIVQAPAGEPG 117 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E + + L ARL+ Sbjct: 118 QERIGLEFEGKDGPALLEFTLSELDRARLVP 148 >gi|30248763|ref|NP_840833.1| hypothetical protein NE0759 [Nitrosomonas europaea ATCC 19718] gi|34222818|sp|Q82WD1|RIMP_NITEU RecName: Full=Ribosome maturation factor rimP gi|30180358|emb|CAD84670.1| DUF150 [Nitrosomonas europaea ATCC 19718] Length = 143 Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 44/150 (29%), Positives = 81/150 (54%), Gaps = 11/150 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + +++P I M + V I LL++F+++ +G++TL DC +S +S +L VEN Sbjct: 3 LFELLEPTIAGMGYELVDIEQSAPGR-LLRVFIDKKEGSITLDDCVAISNHLSQLLAVEN 61 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I + RLEVSSPG+DRP+ +K+DF+R+ G + ++ ++ +G ++ ++ Sbjct: 62 I--DYNRLEVSSPGLDRPLKKKADFVRYMGESARIRLRIALQGQRNFVGTLVEVNDDVLT 119 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L + + + I +L ARLI Sbjct: 120 LNADGKL--------LQIELRNLEKARLIP 141 >gi|294670567|ref|ZP_06735446.1| hypothetical protein NEIELOOT_02289 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307692|gb|EFE48935.1| hypothetical protein NEIELOOT_02289 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 143 Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 73/149 (48%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++ + + + V L + L++F+++ +G +T+ DC +S +S + VE Sbjct: 2 DIQQILDKTLPGLGYELVDFELTAQG--TLRVFIDK-EGGITVEDCATVSNHLSRLFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 ++ + LE+SSPG+DRP+ + +DF+R+ G + L ++ IG+I Sbjct: 59 DV--DYKNLEISSPGLDRPLKKTADFVRFAGQQAKIKTRLPIDGQKNFIGRIEACENDIV 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 L + + +I +++ ARL Sbjct: 117 TLSFDGK--------TASIEINNIDKARL 137 >gi|237748746|ref|ZP_04579226.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] gi|229380108|gb|EEO30199.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] Length = 162 Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 79/158 (50%), Gaps = 14/158 (8%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVE-RDDG----NMTLRDCEELSQAISPI 79 + +I+ + + V + + LL+++++ + + N++L DCE++S+ +S + Sbjct: 2 LQELIEKTVSGCGYDLVDVERAQGN--LLRVYIDFKPEDAGRGNISLEDCEKVSRQLSHV 59 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD---KQKLIGKIM 136 L VE++ + RLEVSSPG+DRP+ + +DF+R+ G ++ ++ G ++ Sbjct: 60 LMVEDV--DYDRLEVSSPGLDRPLKKFADFVRFVGMEAHVKLRKPVTGMSNRKTFQGILL 117 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 LE E + E + + L I + A L+ Sbjct: 118 APEGDELALEFEGKDENNNSVLHFTI--ADIDKAHLVP 153 >gi|332532409|ref|ZP_08408287.1| NusA-like protein [Pseudoalteromonas haloplanktis ANT/505] gi|332038052|gb|EGI74499.1| NusA-like protein [Pseudoalteromonas haloplanktis ANT/505] Length = 151 Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 73/156 (46%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 L D+ +++ P +E + F + + ++ L++++ +D +++ +C + S+ IS Sbjct: 2 TKLEQDLVTMLTPAVEMLGFELHGLEFVQAGRHSTLRVYIAHED-GISVDNCADASRQIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ILDVE+ I Y LEVSSPG+DR + ++ + + G V L ++ G ++ Sbjct: 61 AILDVEDPITNEYDLEVSSPGVDRLLFKQDHYEQAQGEEVRVRTKLPQDGRRNFKGDLVA 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 S L + + I ++ A LI Sbjct: 121 VSSDMITLSSDG--------AEHLIMLSNIERANLI 148 >gi|291523275|emb|CBK81568.1| Uncharacterized protein conserved in bacteria [Coprococcus catus GD/7] Length = 154 Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 42/160 (26%), Positives = 79/160 (49%), Gaps = 9/160 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 +++ P++E F V + ++ N L+ ++++ + +T+ DCEE+S+ Sbjct: 1 MAKKDYESRTEAMLMPIVEAKGFELVDVEWVKEGANWYLRAYIDK-ENGITVDDCEEVSR 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S +LD E+ I +Y LEVSSPG+DRP+ ++ DF R G V ++ + +++ +G Sbjct: 60 ALSDLLDEEDFISENYILEVSSPGLDRPLKKEKDFARSIGKDVEVKLFKAINKEKEFVGI 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E LE E E ++ + RL Sbjct: 120 LKAYDEDTVTLEMED-------ETEMQFKRSDIARIRLAF 152 >gi|15836838|ref|NP_297526.1| hypothetical protein XF0233 [Xylella fastidiosa 9a5c] gi|9105044|gb|AAF83046.1|AE003877_1 conserved hypothetical protein [Xylella fastidiosa 9a5c] Length = 215 Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 82/166 (49%), Gaps = 14/166 (8%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVE-----RDDGNMTLRDC 69 D G+ I +++ P +E + F + L +L+++++ + + +++ DC Sbjct: 17 VSDKGIE--IVNLLAPKVETLGFELLGAEYLLVPSGAILRLYIDTPFAMQPECMVSIDDC 74 Query: 70 EELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ 129 E +S+ +S LDVE I G+Y LEVSSPG+DR + F R V + L + Sbjct: 75 ERVSREVSAYLDVEEPISGNYTLEVSSPGLDRRLFTLEQFARHYNQFVKVGLKLPQHGSR 134 Query: 130 KLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +L GKI+ + + +N +++A+ F+++ AR++ Sbjct: 135 RLQGKIVRVE------QVDGFVVLLVNGVELAVDFNNIDKARIVPD 174 >gi|187923622|ref|YP_001895264.1| hypothetical protein Bphyt_1630 [Burkholderia phytofirmans PsJN] gi|226736380|sp|B2T379|RIMP_BURPP RecName: Full=Ribosome maturation factor rimP gi|187714816|gb|ACD16040.1| protein of unknown function DUF150 [Burkholderia phytofirmans PsJN] Length = 152 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 71/151 (47%), Gaps = 9/151 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I+ + + + V + +L I++++ + + DCE++++ + +L VE Sbjct: 2 QLTELIETTVVGLGYELVDLERTGRG--MLCIYIDQP-AGIAIEDCEKVTRQLQHVLTVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DRP+ + +DF R+ G V + ++ G + Sbjct: 59 NI--DYERLEVSSPGLDRPLKKLADFERFAGSEVVITLKKPLDGRKSYRGILHAPQGETI 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 LE E + + + + ARL+ Sbjct: 117 GLEFEGKE----GAAMLDFTLADIDKARLVP 143 >gi|259585824|sp|A8ZZ67|RIMP_DESOH RecName: Full=Ribosome maturation factor rimP Length = 161 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 37/159 (23%), Positives = 73/159 (45%), Gaps = 11/159 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVER--DDGNMTLRDCEELSQAIS 77 + + +++PV V + +E +L++++ D +TL DC +S+ ++ Sbjct: 7 VVAQMWKLVEPVCSAEGMELVFVEFNKESQGRVLRLYLASGVPDRGVTLEDCAGISRQVN 66 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDV +Y LEVSS G++RP+ ++ DF R+ G V D++ G ++G Sbjct: 67 GLLDVYLPELDNYTLEVSSAGLERPLAKEIDFERFAGSRVKIRTAAPVSDRKNFTGILLG 126 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 S+ L + + I + + A+L+ D Sbjct: 127 VSDGNVRLMVDDK--------TFVIPYGEITRAKLVNED 157 >gi|70726650|ref|YP_253564.1| hypothetical protein SH1649 [Staphylococcus haemolyticus JCSC1435] gi|82582359|sp|Q4L5W7|RIMP_STAHJ RecName: Full=Ribosome maturation factor rimP gi|68447374|dbj|BAE04958.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 155 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 77/154 (50%), Gaps = 6/154 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + ++ ++I P+++E++F V++ + K+ L+I +++ +G + L DC S+ IS Sbjct: 2 SKITEEVETIITPILDELNFELVEVEYTKEGKDHFLRISIDK-EGGVNLNDCTLASEKIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +D + I Y L+V+SPG +RP+ ++ D+ V + ++ +G + Sbjct: 61 EAMDENDPIPDMYYLDVASPGAERPIKKEKDYHNAIDKPVFVSLYAPIEGDKEWLGILKA 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 + +E +++ + QI I + + AR Sbjct: 121 VDDDTITMEVKEKAKTK----QIEIPRNKIAKAR 150 >gi|237746614|ref|ZP_04577094.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] gi|229377965|gb|EEO28056.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] Length = 182 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 74/161 (45%), Gaps = 14/161 (8%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVE-----RDDGNMTLRDCEELSQAI 76 + +++ + + V + +L+++++ GN+T+ DCE++S+ + Sbjct: 19 QALLQELVEKTVNGCGYDLVDLERASGG--ILRVYIDFLPEASSRGNITVDDCEKVSRQL 76 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD---KQKLIG 133 S +L VE++ + RLEVSSPG+DRP+ + DF+R+ G + ++ G Sbjct: 77 SHVLTVEDV--DYDRLEVSSPGLDRPLKKWQDFVRFAGMEAHVRLRKPVTGMGNRKSFQG 134 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ LE E + + L I + ARL+ Sbjct: 135 ILLPPEGDELALEFEGNDSESSSVLHFTI--TDIDKARLVP 173 >gi|210612464|ref|ZP_03289322.1| hypothetical protein CLONEX_01523 [Clostridium nexile DSM 1787] gi|210151572|gb|EEA82579.1| hypothetical protein CLONEX_01523 [Clostridium nexile DSM 1787] Length = 169 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 39/142 (27%), Positives = 71/142 (50%), Gaps = 2/142 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++ P++E F V + ++ N L+ ++++ G +++ DCE +S+A S IL Sbjct: 22 EQKTEELLLPIVESNGFELVDVEYVKEGGNWYLRAYIDKP-GGISVDDCEVVSRAFSDIL 80 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D ++ IE Y EVSSPG+ RP+ ++ DF R G V + +++ IG + + Sbjct: 81 DEKDYIEDTYIFEVSSPGLGRPLKKEKDFARSIGEEVEIRTYRAIDRQKEFIGILKEYDQ 140 Query: 141 TGFFLEKEKRGEKDMNELQIAI 162 +E E K +IA+ Sbjct: 141 DTVTIEYEDETTKTFERSEIAL 162 >gi|119898400|ref|YP_933613.1| hypothetical protein azo2109 [Azoarcus sp. BH72] gi|259585699|sp|A1K7C1|RIMP_AZOSB RecName: Full=Ribosome maturation factor rimP gi|119670813|emb|CAL94726.1| conserved hypothetical protein [Azoarcus sp. BH72] Length = 144 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 82/154 (53%), Gaps = 12/154 (7%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + ++++ V+ + + V L K LL++F++ + +T+ DC +S ++ + Sbjct: 1 MQAGVENLVEQVVSGLGYELVDFELSP-KGRLLRVFID-IERGVTVDDCATVSNQLTRVF 58 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 +VEN+ + RLEVSSPG+DRP+ + +DF R+ G + + L G+++ +G + G E Sbjct: 59 EVENV--DYDRLEVSSPGLDRPLKKLADFERFAGQEIQLRLSLPIGNQRNFVGVLQGVRE 116 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + L EK ++ F+ + ARL+ Sbjct: 117 SSVVLLTEK--------GELLAPFEEIEKARLVP 142 >gi|255284073|ref|ZP_05348628.1| hypothetical protein BRYFOR_09459 [Bryantella formatexigens DSM 14469] gi|255265418|gb|EET58623.1| hypothetical protein BRYFOR_09459 [Bryantella formatexigens DSM 14469] Length = 201 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 77/163 (47%), Gaps = 9/163 (5%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEEL 72 R+ +++QP+++ F V + ++ + L+ ++++ G +T+ DCE + Sbjct: 46 RMTKREMYEQKTEAILQPIVDANGFELVDVEYVKEGGSWYLRAYIDKP-GGITVDDCELV 104 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+A + ILD ++ +E Y EVSSPG+ RP+ ++ DF+R G V + +++ Sbjct: 105 SRAANDILDEQDFVEESYIFEVSSPGLGRPLKKEKDFVRSIGEEVEIRTFRAIEKQKEFY 164 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 G + + + E E ++ I+ + RL Sbjct: 165 GILKAFDKESVTIVLED-------ESEMQIARADIALIRLAFD 200 >gi|227551757|ref|ZP_03981806.1| protein of hypothetical function DUF150 [Enterococcus faecium TX1330] gi|257887082|ref|ZP_05666735.1| conserved hypothetical protein [Enterococcus faecium 1,141,733] gi|257895647|ref|ZP_05675300.1| conserved hypothetical protein [Enterococcus faecium Com12] gi|257898237|ref|ZP_05677890.1| conserved hypothetical protein [Enterococcus faecium Com15] gi|293377742|ref|ZP_06623931.1| conserved hypothetical protein [Enterococcus faecium PC4.1] gi|293570614|ref|ZP_06681665.1| hypothetical protein EfmE980_0412 [Enterococcus faecium E980] gi|227179062|gb|EEI60034.1| protein of hypothetical function DUF150 [Enterococcus faecium TX1330] gi|257823136|gb|EEV50068.1| conserved hypothetical protein [Enterococcus faecium 1,141,733] gi|257832212|gb|EEV58633.1| conserved hypothetical protein [Enterococcus faecium Com12] gi|257836149|gb|EEV61223.1| conserved hypothetical protein [Enterococcus faecium Com15] gi|291609285|gb|EFF38556.1| hypothetical protein EfmE980_0412 [Enterococcus faecium E980] gi|292643742|gb|EFF61863.1| conserved hypothetical protein [Enterococcus faecium PC4.1] Length = 157 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 76/158 (48%), Gaps = 8/158 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + ++ ++ P+++E F V++ ++ K+ L++F+++ +G + + +C +S+ +S Sbjct: 2 SSVVETVTEMVTPILDEQHFELVEVEFVKEGKSWFLRVFIDK-EGGIDIEECAFVSEKLS 60 Query: 78 PILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + I Y LEVSSPG +RP+ ++SD+ + G V + +++ G + Sbjct: 61 EKLDAADPDPIPQAYFLEVSSPGAERPLKKESDYEKALGDYVHVSLYQPVDGEKQYEGFL 120 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L+ E ++ ++ ARL Sbjct: 121 QSFDAEQLTLKI----RIKTREKELTFDRKNIAKARLA 154 >gi|240116050|ref|ZP_04730112.1| hypothetical protein NgonPID1_07356 [Neisseria gonorrhoeae PID18] gi|260440136|ref|ZP_05793952.1| hypothetical protein NgonDG_03444 [Neisseria gonorrhoeae DGI2] Length = 143 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 76/149 (51%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI ++++ + + + L + L++F+++ +G +T+ DC +S +S + VE Sbjct: 2 DIQTILEKTLPGLGYELADFELAAQG--TLRVFIDK-EGGITVEDCATVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +I G+ LE+SSPG+DRP+ + +DF+R+ G + L G ++ IGKI G Sbjct: 59 DI--GYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIGGQKNFIGKIEGCENDTV 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + + I ++ ARL Sbjct: 117 TVSFDGK--------TVQIELGNIDKARL 137 >gi|76809648|ref|YP_333312.1| hypothetical protein BURPS1710b_1913 [Burkholderia pseudomallei 1710b] gi|167911168|ref|ZP_02498259.1| hypothetical protein Bpse112_11783 [Burkholderia pseudomallei 112] gi|254259962|ref|ZP_04951016.1| conserved hypothetical protein [Burkholderia pseudomallei 1710a] gi|91208395|sp|Q3JSZ1|RIMP_BURP1 RecName: Full=Ribosome maturation factor rimP gi|76579101|gb|ABA48576.1| conserved hypothetical protein [Burkholderia pseudomallei 1710b] gi|254218651|gb|EET08035.1| conserved hypothetical protein [Burkholderia pseudomallei 1710a] Length = 153 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 72/151 (47%), Gaps = 8/151 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I+ + + + V + ++ +++++ +T+ DCE++++ + +L VE Sbjct: 2 QLTELIETTVTGLGYELVDLERTGRG--MVCVYIDQP-AGITIDDCEKVTRQLQHVLTVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DRP+ + +DF R+ G + ++ G + + Sbjct: 59 NI--DYERLEVSSPGLDRPLKKLADFTRFAGSEAVITLKKPLDGRKTYRGILHAPNGETI 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 LE E K + + + ARLI Sbjct: 117 GLEFE---RKKGEAAMLDFTLADVDKARLIP 144 >gi|289550943|ref|YP_003471847.1| hypothetical protein SLGD_01629 [Staphylococcus lugdunensis HKU09-01] gi|289180475|gb|ADC87720.1| hypothetical protein SLGD_01629 [Staphylococcus lugdunensis HKU09-01] Length = 155 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 85/154 (55%), Gaps = 6/154 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + ++ ++IQPV+E +++ V++ ++ K+ L++ +++ +G + L DC S+ IS Sbjct: 2 SKITEEVETLIQPVLEALNYELVEVEFVKEGKDHFLRVSIDK-EGGVDLNDCTLASEKIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++D + I+ Y L+V+SPG +RP+ ++ D+ + + + + ++ +G ++ Sbjct: 61 EVMDEHDPIKEMYYLDVASPGAERPIKKEQDYQKAIQQPIFVSLYAPIENNKEWLGILVE 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 + +E +++ +K QI+I + + AR Sbjct: 121 VTAETITMEVKEKAKKK----QISIPRNKIAKAR 150 >gi|125973510|ref|YP_001037420.1| hypothetical protein Cthe_0995 [Clostridium thermocellum ATCC 27405] gi|256003328|ref|ZP_05428319.1| protein of unknown function DUF150 [Clostridium thermocellum DSM 2360] gi|281417713|ref|ZP_06248733.1| protein of unknown function DUF150 [Clostridium thermocellum JW20] gi|259585742|sp|A3DE48|RIMP_CLOTH RecName: Full=Ribosome maturation factor rimP gi|125713735|gb|ABN52227.1| protein of unknown function DUF150 [Clostridium thermocellum ATCC 27405] gi|255992618|gb|EEU02709.1| protein of unknown function DUF150 [Clostridium thermocellum DSM 2360] gi|281409115|gb|EFB39373.1| protein of unknown function DUF150 [Clostridium thermocellum JW20] gi|316940251|gb|ADU74285.1| protein of unknown function DUF150 [Clostridium thermocellum DSM 1313] Length = 154 Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 41/148 (27%), Positives = 81/148 (54%), Gaps = 2/148 (1%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 + ++ + PV+ + SF V + ++ + L+I++++ G +T+ DC+ +S+ Sbjct: 1 MTRKEIEEIVTEIANPVVNKHSFELVDVEFIKEGSSWYLRIYIDKP-GGITIDDCQVVSE 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 IS ILD E+ I Y LEVSSPG+DRP+ ++SDF R+ G +V ++ K+ G+ Sbjct: 60 EISDILDKEDPIPHSYFLEVSSPGLDRPLKKESDFERFKGELVEVKVFKPIEGKKIFEGE 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAI 162 ++G + ++K + ++A+ Sbjct: 120 LVGYKDNKIIIKKNGNELMEFERDKVAL 147 >gi|294085150|ref|YP_003551910.1| hypothetical protein SAR116_1583 [Candidatus Puniceispirillum marinum IMCC1322] gi|292664725|gb|ADE39826.1| hypothetical protein SAR116_1583 [Candidatus Puniceispirillum marinum IMCC1322] Length = 177 Score = 117 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 47/161 (29%), Positives = 86/161 (53%), Gaps = 10/161 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK--NLLLQIFVER-DDGNMTLRDCEELSQAIS 77 + +S +I+ +E++ F+ V++ + LQI E +D MT+ DC++LS+ I+ Sbjct: 13 VETKVSKIIEAAVEDLGFQLVRVLFMGGNSGRNQLQIMAEPVEDREMTVEDCKKLSRHIA 72 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I Y LEVSSPGIDRP+ + D+ R+ G + + + +++ G++ G Sbjct: 73 ALLDVEDPISSAYVLEVSSPGIDRPLTKIEDYERFEGELAKINLRMMRDGRRRFNGRLNG 132 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDEL 178 + E + + + A +FD + SAR+ + L Sbjct: 133 FDD-------EGKIVLETTFGRFAFAFDEIDSARIDPAEIL 166 >gi|68250160|ref|YP_249272.1| hypothetical protein NTHI1846 [Haemophilus influenzae 86-028NP] gi|145629345|ref|ZP_01785144.1| hypothetical protein CGSHi22121_11095 [Haemophilus influenzae 22.1-21] gi|145641319|ref|ZP_01796898.1| hypothetical protein CGSHiR3021_04472 [Haemophilus influenzae R3021] gi|81335416|sp|Q4QK35|RIMP_HAEI8 RecName: Full=Ribosome maturation factor rimP gi|68058359|gb|AAX88612.1| conserved hypothetical protein [Haemophilus influenzae 86-028NP] gi|144978848|gb|EDJ88571.1| hypothetical protein CGSHi22121_11095 [Haemophilus influenzae 22.1-21] gi|145273862|gb|EDK13729.1| hypothetical protein CGSHiR3021_04472 [Haemophilus influenzae 22.4-21] gi|301170016|emb|CBW29620.1| conserved protein [Haemophilus influenzae 10810] Length = 151 Score = 117 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 79/154 (51%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ ++Q ++++ I + +++F+++ +G +T+ DC ++S+ +S I Sbjct: 4 LEQNLQEMLQDAVKDLGCELWGIECQRVGRFMTVRLFIDK-EGGVTVDDCADVSRQVSAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ F R+ G +A + + +++K GK+ Sbjct: 63 LDVEDPIADKYNLEVSSPGLDRPLFTLPQFERYIGQDIAVHLRIPVMERRKWQGKLERIE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + L + + + + F ++ A ++ Sbjct: 123 KDMITLIVDDQEQILV--------FGNIQKANVV 148 >gi|145638848|ref|ZP_01794456.1| hypothetical protein CGSHiII_01640 [Haemophilus influenzae PittII] gi|145271820|gb|EDK11729.1| hypothetical protein CGSHiII_01640 [Haemophilus influenzae PittII] gi|309750829|gb|ADO80813.1| 30S ribosomal maturation protein RimP [Haemophilus influenzae R2866] Length = 151 Score = 117 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 79/154 (51%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 L ++ ++Q +E++ I + +++F+++ +G +T+ +C ++S+ +S I Sbjct: 4 LEQNLQEMLQDAVEDLGCELWGIECQRVGRFMTVRLFIDK-EGGVTVDNCADVSRQVSAI 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE+ I Y LEVSSPG+DRP+ F R+ G +A + + +++K GK+ Sbjct: 63 LDVEDPIADKYNLEVSSPGLDRPLFTLPQFERYIGQDIAVHLRIPVMERRKWQGKLERIE 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + L + + + + F ++ A ++ Sbjct: 123 KDMITLIVDDQEQILV--------FGNIQKANVV 148 >gi|300854497|ref|YP_003779481.1| hypothetical protein CLJU_c13110 [Clostridium ljungdahlii DSM 13528] gi|300434612|gb|ADK14379.1| conserved hypothetical protein [Clostridium ljungdahlii DSM 13528] Length = 154 Score = 117 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 44/158 (27%), Positives = 83/158 (52%), Gaps = 9/158 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 +S++IQP++ +++ + + N L+I++++ +GN++L DCE +S+ Sbjct: 1 MTKNTFMERMSALIQPIVNNLNYELYYLEFKKEGNNNYLRIYIDKKEGNISLEDCESVSR 60 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S +LD E+ I+ Y LEVSSPG++R + + R+ G+ V I K+K G+ Sbjct: 61 AVSDMLDKEDPIKDPYYLEVSSPGVERKLYTEEHLKRYIGYSVQVNISGLLKGKKKYEGE 120 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ + ++ E E IAI D +L+ L Sbjct: 121 LLDFNSNELKIKCE--------EEDIAIPRDKILNVNL 150 >gi|87200506|ref|YP_497763.1| hypothetical protein Saro_2493 [Novosphingobium aromaticivorans DSM 12444] gi|123488750|sp|Q2G5E4|RIMP_NOVAD RecName: Full=Ribosome maturation factor rimP gi|87136187|gb|ABD26929.1| protein of unknown function DUF150 [Novosphingobium aromaticivorans DSM 12444] Length = 186 Score = 117 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 56/183 (30%), Positives = 88/183 (48%), Gaps = 19/183 (10%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNL-----LLQIFVERDDGN-MTLRDCEELSQAI 76 I V++P + + F V++ + + LQI ER D + + DC LS+ + Sbjct: 5 ARIIEVVEPEAKALGFDLVRVRYFKGGEIGDEEHTLQIMAERPDTGQLVIEDCAALSRRV 64 Query: 77 SPILDV-----ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 S D + +IE YRLEVSSPGIDRP+ R DF W GH E+ ++++ Sbjct: 65 SDRFDELEEAGDVLIEDAYRLEVSSPGIDRPLTRAKDFAAWIGHEARVELSELLDNRKRF 124 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS--LNNYGSY 189 G++ G + E G + FD + +A+LI+TD+L+ AS L+ G+ Sbjct: 125 RGELKGFDAETQAISIEDDGV------VFEVPFDLVSNAKLILTDKLIAASRPLDTSGAD 178 Query: 190 AGL 192 L Sbjct: 179 EIL 181 >gi|260583737|ref|ZP_05851485.1| conserved hypothetical protein [Granulicatella elegans ATCC 700633] gi|260158363|gb|EEW93431.1| conserved hypothetical protein [Granulicatella elegans ATCC 700633] Length = 157 Score = 117 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 74/158 (46%), Gaps = 8/158 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 +A +S++ PVIE F V + ++ KN L+ ++++ G + L DC +S+ S Sbjct: 2 SKVAELVSTLALPVIEAEGFELVDLEFVKEGKNWFLRFYLDKP-GGIDLDDCAFMSEKFS 60 Query: 78 PILDVENI--IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +LD ++ I Y LEVSSPG +RP+ + D G V ++ L G + Sbjct: 61 ELLDAQDPDPIPQAYFLEVSSPGAERPLKTEKDLKEAIGQYVHLSFYQQVEGEKFLEGFL 120 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 ++ LE + + K + I +++ ARL Sbjct: 121 TEVTDESVTLEVKIKTRKKS----VTIVRENIAKARLA 154 >gi|242278480|ref|YP_002990609.1| hypothetical protein Desal_1005 [Desulfovibrio salexigens DSM 2638] gi|259585762|sp|C6C0D6|RIMP_DESAD RecName: Full=Ribosome maturation factor rimP gi|242121374|gb|ACS79070.1| protein of unknown function DUF150 [Desulfovibrio salexigens DSM 2638] Length = 155 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 74/158 (46%), Gaps = 7/158 (4%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 LA +S ++P IE M + + + I+++ + +++ C E+S+ Sbjct: 1 MEQGSLAKKVSQFVEPTIESMGLTLWGVEVTSANRPAVIIYIDS-ENGVSIDQCAEVSRD 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 + +L+VE +I+ Y LEVSSPG++R + + G + +V S ++K G + Sbjct: 60 VGLMLEVEEVIDSAYVLEVSSPGLERKFFKPEQMSAYVGKKIDIALVFSLEGRKKFKGLL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 T E G L+ E E I I +D + A+LI Sbjct: 120 QETDEEGLLLKLED------QEDPIKIEWDRIKKAKLI 151 >gi|331084711|ref|ZP_08333799.1| ribosome maturation factor rimP [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410805|gb|EGG90227.1| ribosome maturation factor rimP [Lachnospiraceae bacterium 9_1_43BFAA] Length = 155 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 2/142 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 +I P++E F V + ++ N L+ ++++ G + + DCE +S+A S IL Sbjct: 8 EQKTEELILPIVEGNGFELVDVEYVKEGSNWYLRAYIDKP-GGIAVDDCEVVSRAFSEIL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D E+ IE Y EVSSPG+ RP+ ++ DF R G V + +++ G + + Sbjct: 67 DREDYIEDTYIFEVSSPGLGRPLKKEKDFKRSLGEEVEIRTYRAIDRQKEFTGILKSYDK 126 Query: 141 TGFFLEKEKRGEKDMNELQIAI 162 +E E K +IA+ Sbjct: 127 DTVTIEYEDGEPKTFERSEIAL 148 >gi|194467744|ref|ZP_03073730.1| protein of unknown function DUF150 [Lactobacillus reuteri 100-23] gi|194452597|gb|EDX41495.1| protein of unknown function DUF150 [Lactobacillus reuteri 100-23] Length = 157 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 74/158 (46%), Gaps = 8/158 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + ++ ++ P++++ F + ++ K+ L++++++ DG +TL DC +S +S Sbjct: 2 SSVVETVTDLVTPILQDHDFYLYDLEFVKEGKSWYLRVYIDK-DGGITLEDCALVSDELS 60 Query: 78 PILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + I Y LEVSSPG +RP+ ++ D+ R H + + ++ G + Sbjct: 61 EALDNVEPDPIPQAYFLEVSSPGAERPLKKEEDYQRAIDHYIHISLYQQINGQKIYEGTL 120 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 S+ L+ + QI I + ARL Sbjct: 121 TQLSDKEITLDYLDK----TRHRQITIDRQKIAQARLA 154 >gi|323489586|ref|ZP_08094813.1| hypothetical protein GPDM_09575 [Planococcus donghaensis MPA1U2] gi|323396717|gb|EGA89536.1| hypothetical protein GPDM_09575 [Planococcus donghaensis MPA1U2] Length = 161 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 73/158 (46%), Gaps = 5/158 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 + I + QP+ E+ V + L+E L+++V+ + + + C +S+ +S Sbjct: 2 SKITEQIEQIAQPITSELGLELVDVEFLKEGRDWFLRVYVDNPEAPIDIEQCALVSEKLS 61 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ILD + IE +Y LEVSSPG +RP+ ++ DF + G + + D ++ G + Sbjct: 62 GILDELDPIEQNYFLEVSSPGAERPLKKEKDFEKAIGKFIYIKTYEPVEDAKEFEGYLKS 121 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + +E + I+I+ + + RL + Sbjct: 122 YDDEQVEIEI----KIKTRRKIISIAKNKIAVIRLAID 155 >gi|227544952|ref|ZP_03975001.1| protein of hypothetical function DUF150 [Lactobacillus reuteri CF48-3A] gi|300910017|ref|ZP_07127477.1| protein of hypothetical function DUF150 [Lactobacillus reuteri SD2112] gi|77745317|gb|ABB02559.1| unknown [Lactobacillus reuteri] gi|227185063|gb|EEI65134.1| protein of hypothetical function DUF150 [Lactobacillus reuteri CF48-3A] gi|300892665|gb|EFK86025.1| protein of hypothetical function DUF150 [Lactobacillus reuteri SD2112] Length = 162 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 73/158 (46%), Gaps = 8/158 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + ++ ++ P++++ F + ++ K+ L++++++ DG +TL DC +S +S Sbjct: 7 SSVVETVTDLVTPILQDHDFYLYDLEFVKEGKSWYLRVYIDK-DGGITLEDCALVSDELS 65 Query: 78 PILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + I Y LEVSSPG +RP+ ++ D+ R H + + ++ G + Sbjct: 66 EALDNVEPDPIPQAYFLEVSSPGAERPLKKEEDYQRAIDHYIHISLYQQINGQKVYEGTL 125 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 S L+ + QI I + ARL Sbjct: 126 TQLSNKEITLDYLDK----TRHRQITIDRQKIAQARLA 159 >gi|15924255|ref|NP_371789.1| hypothetical protein SAV1265 [Staphylococcus aureus subsp. aureus Mu50] gi|15926848|ref|NP_374381.1| hypothetical protein SA1108 [Staphylococcus aureus subsp. aureus N315] gi|148267755|ref|YP_001246698.1| hypothetical protein SaurJH9_1325 [Staphylococcus aureus subsp. aureus JH9] gi|150393814|ref|YP_001316489.1| hypothetical protein SaurJH1_1351 [Staphylococcus aureus subsp. aureus JH1] gi|156979586|ref|YP_001441845.1| hypothetical protein SAHV_1255 [Staphylococcus aureus subsp. aureus Mu3] gi|253315621|ref|ZP_04838834.1| hypothetical protein SauraC_05652 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253733497|ref|ZP_04867662.1| protein of hypothetical function DUF150 [Staphylococcus aureus subsp. aureus TCH130] gi|255006052|ref|ZP_05144653.2| hypothetical protein SauraM_06265 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795679|ref|ZP_05644658.1| conserved hypothetical protein [Staphylococcus aureus A9781] gi|258416082|ref|ZP_05682350.1| conserved hypothetical protein [Staphylococcus aureus A9763] gi|258421665|ref|ZP_05684589.1| conserved hypothetical protein [Staphylococcus aureus A9719] gi|258434821|ref|ZP_05688895.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|258444603|ref|ZP_05692932.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|258447564|ref|ZP_05695708.1| hypothetical protein SAIG_00219 [Staphylococcus aureus A6300] gi|258449406|ref|ZP_05697509.1| hypothetical protein SAHG_00482 [Staphylococcus aureus A6224] gi|258454785|ref|ZP_05702749.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|269202882|ref|YP_003282151.1| hypothetical protein SAAV_1240 [Staphylococcus aureus subsp. aureus ED98] gi|282892753|ref|ZP_06300988.1| hypothetical protein SGAG_00108 [Staphylococcus aureus A8117] gi|282927607|ref|ZP_06335223.1| conserved hypothetical protein [Staphylococcus aureus A10102] gi|295406202|ref|ZP_06816009.1| UPF0090 protein [Staphylococcus aureus A8819] gi|296274823|ref|ZP_06857330.1| hypothetical protein SauraMR_00705 [Staphylococcus aureus subsp. aureus MR1] gi|297244430|ref|ZP_06928313.1| hypothetical protein SLAG_00512 [Staphylococcus aureus A8796] gi|54040041|sp|P67221|RIMP_STAAN RecName: Full=Ribosome maturation factor rimP gi|54042669|sp|P67220|RIMP_STAAM RecName: Full=Ribosome maturation factor rimP gi|166977846|sp|A7X1P6|RIMP_STAA1 RecName: Full=Ribosome maturation factor rimP gi|189038661|sp|A5ISE9|RIMP_STAA9 RecName: Full=Ribosome maturation factor rimP gi|189038668|sp|A6U184|RIMP_STAA2 RecName: Full=Ribosome maturation factor rimP gi|13701065|dbj|BAB42360.1| conserved hypotehtical protein [Staphylococcus aureus subsp. aureus N315] gi|14247035|dbj|BAB57427.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] gi|147740824|gb|ABQ49122.1| protein of unknown function DUF150 [Staphylococcus aureus subsp. aureus JH9] gi|149946266|gb|ABR52202.1| protein of unknown function DUF150 [Staphylococcus aureus subsp. aureus JH1] gi|156721721|dbj|BAF78138.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|253728551|gb|EES97280.1| protein of hypothetical function DUF150 [Staphylococcus aureus subsp. aureus TCH130] gi|257789651|gb|EEV27991.1| conserved hypothetical protein [Staphylococcus aureus A9781] gi|257839230|gb|EEV63706.1| conserved hypothetical protein [Staphylococcus aureus A9763] gi|257842351|gb|EEV66776.1| conserved hypothetical protein [Staphylococcus aureus A9719] gi|257849182|gb|EEV73164.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|257850096|gb|EEV74049.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|257853755|gb|EEV76714.1| hypothetical protein SAIG_00219 [Staphylococcus aureus A6300] gi|257857394|gb|EEV80292.1| hypothetical protein SAHG_00482 [Staphylococcus aureus A6224] gi|257863168|gb|EEV85932.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|262075172|gb|ACY11145.1| hypothetical protein SAAV_1240 [Staphylococcus aureus subsp. aureus ED98] gi|282590610|gb|EFB95687.1| conserved hypothetical protein [Staphylococcus aureus A10102] gi|282764750|gb|EFC04875.1| hypothetical protein SGAG_00108 [Staphylococcus aureus A8117] gi|285816947|gb|ADC37434.1| clustered with transcription termination protein NusA [Staphylococcus aureus 04-02981] gi|294968790|gb|EFG44812.1| UPF0090 protein [Staphylococcus aureus A8819] gi|297178460|gb|EFH37706.1| hypothetical protein SLAG_00512 [Staphylococcus aureus A8796] gi|312829659|emb|CBX34501.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315131059|gb|EFT87043.1| hypothetical protein CGSSa03_05939 [Staphylococcus aureus subsp. aureus CGS03] gi|329727532|gb|EGG63988.1| hypothetical protein SA21172_0119 [Staphylococcus aureus subsp. aureus 21172] Length = 155 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 73/154 (47%), Gaps = 6/154 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 + + ++QP++E+++F V + ++E L+I +++ +G + L DC S+ IS Sbjct: 2 SKITEQVEVIVQPIMEDLNFELVDVEYVKEGRDHFLRISIDK-EGGVDLNDCTLASEKIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +D + I Y L+V+SPG +RP+ ++ DF V + + +++ +G + Sbjct: 61 EAMDANDPIPEMYYLDVASPGAERPIKKEQDFQNAITKPVFVSLYVPIEGEKEWLGILQE 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 + ++ + I I D + AR Sbjct: 121 VNNETIVVQV----KIKARTKDIEIPRDKIAKAR 150 >gi|167630354|ref|YP_001680853.1| conserved hypothetical protein, possible yhbc family [Heliobacterium modesticaldum Ice1] gi|259585782|sp|B0THQ9|RIMP_HELMI RecName: Full=Ribosome maturation factor rimP gi|167593094|gb|ABZ84842.1| conserved hypothetical protein, possible yhbc family [Heliobacterium modesticaldum Ice1] Length = 154 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 44/155 (28%), Positives = 79/155 (50%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L +S+ P++EE+ + + ++ N L+IF+++ + + + DC+E+S+ I I Sbjct: 7 LEDRVSAWAMPIVEELGLELIDVEWVKEGGNWYLRIFIDK-EAGIEMEDCQEVSRRIDEI 65 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD E+ + Y LEVSSPGIDRP+ D+ R+ G V ++ +G++ G + Sbjct: 66 LDREDPVAHSYSLEVSSPGIDRPLKSDRDYERFRGETVRITTFAPVMGAKEHLGELAGKN 125 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ET + N+ ++AI + S RL Sbjct: 126 ETSILIR--------KNDEEMAIPLTQVSSVRLYP 152 >gi|299534744|ref|ZP_07048074.1| hypothetical protein BFZC1_01897 [Lysinibacillus fusiformis ZC1] gi|298729832|gb|EFI70377.1| hypothetical protein BFZC1_01897 [Lysinibacillus fusiformis ZC1] Length = 158 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 79/158 (50%), Gaps = 5/158 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 + I + +P+++E++ V I ++E L+++V+ +G + + C ++S+ +S Sbjct: 2 SKVPSLIEELAKPIVDELNLELVDIEFVKEGRNWFLRVYVDTPEGGIDIDQCAQVSERLS 61 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LD ++ I +Y LEVSSPG +RP+ + +DF++ G + + D ++ G + Sbjct: 62 LLLDEKDPITQNYYLEVSSPGAERPLKKDTDFVKAVGKFIYVKTYEPIKDMKEFQGYLTS 121 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 E +E ++ + I + + ARL + Sbjct: 122 YDEHTLVMEV----RIKTRKITVTIEQEKIALARLAID 155 >gi|325661696|ref|ZP_08150319.1| ribosome maturation factor rimP [Lachnospiraceae bacterium 4_1_37FAA] gi|325471949|gb|EGC75164.1| ribosome maturation factor rimP [Lachnospiraceae bacterium 4_1_37FAA] Length = 174 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 2/142 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 +I P++E F V + ++ N L+ ++++ G + + DCE +S+A S IL Sbjct: 27 EQKTEELILPIVEGNGFELVDVEYVKEGSNWYLRAYIDKP-GGIAVDDCEVVSRAFSEIL 85 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D E+ IE Y EVSSPG+ RP+ ++ DF R G V + +++ G + + Sbjct: 86 DREDYIEDTYIFEVSSPGLGRPLKKEKDFKRSLGEEVEIRTYRAIDRQKEFTGILKSYDK 145 Query: 141 TGFFLEKEKRGEKDMNELQIAI 162 +E E K +IA+ Sbjct: 146 DTVTIEYEDGEPKTFERSEIAL 167 >gi|259016316|sp|Q9PGR5|RIMP_XYLFA RecName: Full=Ribosome maturation factor rimP Length = 199 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 82/166 (49%), Gaps = 14/166 (8%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVE-----RDDGNMTLRDC 69 D G+ I +++ P +E + F + L +L+++++ + + +++ DC Sbjct: 1 MSDKGIE--IVNLLAPKVETLGFELLGAEYLLVPSGAILRLYIDTPFAMQPECMVSIDDC 58 Query: 70 EELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ 129 E +S+ +S LDVE I G+Y LEVSSPG+DR + F R V + L + Sbjct: 59 ERVSREVSAYLDVEEPISGNYTLEVSSPGLDRRLFTLEQFARHYNQFVKVGLKLPQHGSR 118 Query: 130 KLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +L GKI+ + + +N +++A+ F+++ AR++ Sbjct: 119 RLQGKIVRVE------QVDGFVVLLVNGVELAVDFNNIDKARIVPD 158 >gi|186476489|ref|YP_001857959.1| hypothetical protein Bphy_1731 [Burkholderia phymatum STM815] gi|226736435|sp|B2JKT6|RIMP_BURP8 RecName: Full=Ribosome maturation factor rimP gi|184192948|gb|ACC70913.1| protein of unknown function DUF150 [Burkholderia phymatum STM815] Length = 152 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 70/151 (46%), Gaps = 9/151 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I+ + + + V + +L I++++ + + DCE++++ + +L VE Sbjct: 2 QLTELIETTVVGLGYELVDLERTGRG--MLCIYIDQP-AGIAIEDCEKVTRQLQHVLTVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DRP+ + +DF R+ G + ++ G + Sbjct: 59 NI--DYERLEVSSPGLDRPLKKLADFERFAGSEAVITLKKPLDGRKSYRGILHAPEGETI 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 LE E + + + + ARL+ Sbjct: 117 GLEFEGKE----GAAMLDFTLADIDKARLVP 143 >gi|256847047|ref|ZP_05552493.1| conserved hypothetical protein [Lactobacillus coleohominis 101-4-CHN] gi|256715711|gb|EEU30686.1| conserved hypothetical protein [Lactobacillus coleohominis 101-4-CHN] Length = 159 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 73/162 (45%), Gaps = 8/162 (4%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQ 74 + ++ ++QP++++ F ++E + L++++++ G +TL DC +S Sbjct: 1 MSTKDVIKTVNELVQPILDQYDFYLFDTEFVKEGHSWYLRVYIDK-TGGITLEDCVNVSD 59 Query: 75 AISPILDVENI--IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 +S LD + I Y LEVSSPG +RP+ ++ D+ R G + + + K+ Sbjct: 60 QLSEALDNCDPDPIPQAYFLEVSSPGAERPLKKEEDYHRAIGEYIHLSLYQALEGKKVYE 119 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G + + ++ + + I + ARL V Sbjct: 120 GNLKTVTADELTIDYLDK----TRHKTLTIPRKLVAKARLAV 157 >gi|223044231|ref|ZP_03614268.1| 3-beta hydroxysteroid dehydrogenase/isomerase family protein [Staphylococcus capitis SK14] gi|222442381|gb|EEE48489.1| 3-beta hydroxysteroid dehydrogenase/isomerase family protein [Staphylococcus capitis SK14] Length = 155 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 76/154 (49%), Gaps = 6/154 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + + ++IQP+++++ F V+I ++ K+ L++ +++ +G + L DC S+ IS Sbjct: 2 SKITEQVETIIQPILDDLKFELVEIEYVKEGKDRFLRVSIDK-EGGVDLNDCTLASEKIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +D + I Y L+V+SPG +RP+ + DF + + ++ +G + Sbjct: 61 EAMDENDPIPEMYYLDVASPGAERPIKKDKDFQNAVSQPIFVSLYAPIEGDKEWLGILKS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 E +E +++ + +I I + + AR Sbjct: 121 VDEDNIVMEVKEKSKTK----EIEIPRNKIAKAR 150 >gi|331701345|ref|YP_004398304.1| ribosome maturation factor rimP [Lactobacillus buchneri NRRL B-30929] gi|329128688|gb|AEB73241.1| Ribosome maturation factor rimP [Lactobacillus buchneri NRRL B-30929] Length = 157 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 76/158 (48%), Gaps = 8/158 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + + V++P++E+ SF + ++E K+ L++++++ G +T+ DC +S +S Sbjct: 2 SNVVETVKQVVEPILEKHSFYLFDVEFVKENKSWYLRVYIDKK-GGITIDDCVLVSDELS 60 Query: 78 PIL--DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 L + I Y LEVSSPG +RP+ ++ + G + + + + G + Sbjct: 61 EKLDAMDPDPIPQAYFLEVSSPGAERPLRNDAELKQAIGEYIHVSLYQNLNGNKTFEGIL 120 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + L+ +K G++D + + + + ARL Sbjct: 121 KSLDDDKLVLQNDKWGKQD----TLEVPRNLIAKARLA 154 >gi|148543927|ref|YP_001271297.1| hypothetical protein Lreu_0695 [Lactobacillus reuteri DSM 20016] gi|184153323|ref|YP_001841664.1| hypothetical protein LAR_0668 [Lactobacillus reuteri JCM 1112] gi|167016762|sp|A5VJD6|RIMP_LACRD RecName: Full=Ribosome maturation factor rimP gi|226708007|sp|B2G6V2|RIMP_LACRJ RecName: Full=Ribosome maturation factor rimP gi|148530961|gb|ABQ82960.1| protein of unknown function DUF150 [Lactobacillus reuteri DSM 20016] gi|183224667|dbj|BAG25184.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112] Length = 157 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 72/158 (45%), Gaps = 8/158 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + ++ ++ P++++ F + ++ K+ L++++ DG +TL DC +S +S Sbjct: 2 SSVVETVTDLVTPILQDHDFYLYDLEFVKEGKSWYLRVYI-NKDGGITLEDCALVSDELS 60 Query: 78 PILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + I Y LEVSSPG +RP+ ++ D+ R H + + ++ G + Sbjct: 61 EALDNVEPDPIPQAYFLEVSSPGAERPLKKEEDYQRAIDHYIHISLYQQINGQKVYEGTL 120 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 S+ L+ + QI I + ARL Sbjct: 121 TQLSDKEITLDYLDK----TRHRQITIDRQKIAQARLA 154 >gi|325569919|ref|ZP_08145913.1| protein of hypothetical function DUF150 [Enterococcus casseliflavus ATCC 12755] gi|325157042|gb|EGC69210.1| protein of hypothetical function DUF150 [Enterococcus casseliflavus ATCC 12755] Length = 170 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 73/150 (48%), Gaps = 8/150 (5%) Query: 27 SVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD--VE 83 ++ P+++ F V++ ++ KN L++F+++ +G + + +C +S+ +S LD Sbjct: 23 DIVTPILDAQKFELVEVEFVKEGKNWFLRVFIDK-EGGIDIEECAFVSEQLSEQLDQCEP 81 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I Y LEVSSPG +RP+ +++D+ R G + + +++ G + E Sbjct: 82 DPIPQAYFLEVSSPGAERPLKKEADYQRAVGEYIHVSLYQPIDGEKQFEGFLQSFDENQL 141 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + + E + I ++ ARL Sbjct: 142 VM----KTRIKTREKERTIDRKNIAKARLA 167 >gi|254283179|ref|ZP_04958147.1| conserved hypothetical protein [gamma proteobacterium NOR51-B] gi|219679382|gb|EED35731.1| conserved hypothetical protein [gamma proteobacterium NOR51-B] Length = 168 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 41/175 (23%), Positives = 77/175 (44%), Gaps = 17/175 (9%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78 G +S ++ P IE + F + LL + +++++R++ +T+ DC +S+ IS Sbjct: 3 GKTTQLSELLTPTIESLGFELWGLELLPPFRKPTFRVYIDREE-GVTVDDCAMVSRHISG 61 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LDVE+ I+ + LEVSSPGIDR + R + + G + + + ++K G Sbjct: 62 VLDVEDPIQTEFTLEVSSPGIDRLLFRPEQYRLYIGEPIEVRLRMPFEGRRKFRGW---- 117 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE-------LLRASLNNY 186 + E + + +S+ A++ E L R S Sbjct: 118 ----LVGVEGDEVVVRAGEHEYVLPLNSVERAKVEPRVEIGKGKNKLKRESAKAE 168 >gi|312793235|ref|YP_004026158.1| hypothetical protein Calkr_1037 [Caldicellulosiruptor kristjanssonii 177R1B] gi|312876953|ref|ZP_07736928.1| protein of unknown function DUF150 [Caldicellulosiruptor lactoaceticus 6A] gi|311796268|gb|EFR12622.1| protein of unknown function DUF150 [Caldicellulosiruptor lactoaceticus 6A] gi|312180375|gb|ADQ40545.1| protein of unknown function DUF150 [Caldicellulosiruptor kristjanssonii 177R1B] Length = 151 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 81/156 (51%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQAIS 77 + + +++P++E+ F V I +E L++++++ G +T+ DC+ +S+ +S Sbjct: 2 SKITKKVEELVKPILEKYGFDLVDIEFKKEGRSYFLRVYIDKP-GGITIDDCQLVSEELS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD+ + I Y LEVSSPG+DRP+V DF+R G VV + ++ K+ G+++ Sbjct: 61 EKLDIVDPIPFSYYLEVSSPGVDRPLVTDRDFIRNRGRVVDVFLNQPFLNRTKITGELVE 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 +E L +K I I +++ +L Sbjct: 121 KNEKSLVLIVDKEK--------IDIPVENIKKVKLA 148 >gi|259016312|sp|Q3IJ55|RIMP_PSEHT RecName: Full=Ribosome maturation factor rimP Length = 151 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 72/156 (46%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 L D+ +++ P +E + F + + ++ L++++ + +++ +C + S+ IS Sbjct: 2 TKLEQDLVAMLTPAVEMLGFELHGLEFVQAGRHSTLRVYITH-EAGISVDNCADASRQIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ILDVE+ I Y LEVSSPG+DR + ++ + + G V L ++ G ++ Sbjct: 61 AILDVEDPITNEYDLEVSSPGVDRLLFKQDHYEQAQGEEVQLRTKLPQDGRRNFKGDLIA 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + L + + I ++ A +I Sbjct: 121 VTSDMITLSSDG--------TEHLIMLSNIERANII 148 >gi|212634072|ref|YP_002310597.1| hypothetical protein swp_1216 [Shewanella piezotolerans WP3] gi|212555556|gb|ACJ28010.1| Conserved hypothetical protein [Shewanella piezotolerans WP3] Length = 141 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 71/147 (48%), Gaps = 10/147 (6%) Query: 28 VIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 +++ +E + + + K+ +L+++++ + + + DC E S+ +S ++DVE+ I Sbjct: 1 MLKAPVEALGHELWGLEYIQAGKHSILRLYIDN-EKGIFIEDCAETSRQVSAVMDVEDPI 59 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE 146 Y LEVSSPG+DRP+ + + G V ++ + + L G ++G L Sbjct: 60 STEYTLEVSSPGVDRPLFTAEQYQLYIGETVKVQVTMPVAGSRNLKGTVIGIEGQMLTLS 119 Query: 147 KEKRGEKDMNELQIAISFDSLLSARLI 173 + ++ I+ D++ LI Sbjct: 120 VDG--------NELIIALDNIRKGNLI 138 >gi|314933444|ref|ZP_07840809.1| conserved hypothetical protein [Staphylococcus caprae C87] gi|313653594|gb|EFS17351.1| conserved hypothetical protein [Staphylococcus caprae C87] Length = 155 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 77/154 (50%), Gaps = 6/154 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + + ++IQP+++++ F V+I ++ K+ L++ +++ +G + L DC S+ IS Sbjct: 2 SKITEQVETIIQPILDDLKFELVEIEYVKEGKDRFLRVSIDK-EGGVDLNDCTLASEKIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +D + I Y L+V+SPG +RP+ ++ DF + + ++ +G + Sbjct: 61 EAMDENDPIPEMYYLDVASPGAERPIKKEKDFQNAVSQPIFVSLYAPIEGDKEWLGILKS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 E +E +++ + +I I + + AR Sbjct: 121 VDEENIVMEVKEKSKTK----EIEIPRNKIAKAR 150 >gi|225075065|ref|ZP_03718264.1| hypothetical protein NEIFLAOT_00064 [Neisseria flavescens NRL30031/H210] gi|224953549|gb|EEG34758.1| hypothetical protein NEIFLAOT_00064 [Neisseria flavescens NRL30031/H210] Length = 143 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 74/149 (49%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI S++ + + + V L + + L++F+++ +G +T+ DC +S +S + VE Sbjct: 2 DIQSILDKTLPGLGYELVDFELTAQGD--LRVFIDK-EGGITVEDCATVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +I + RLE+SSPG+DRP+ + +DF+R+ G + L ++ IG+I Sbjct: 59 DI--DYKRLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIDGQKNFIGRIESCENDIV 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + I ++ ARL Sbjct: 117 TVSFDGK--------TAQIELSNIDKARL 137 >gi|322382350|ref|ZP_08056257.1| hypothetical protein PL1_2630 [Paenibacillus larvae subsp. larvae B-3650] gi|321153703|gb|EFX46078.1| hypothetical protein PL1_2630 [Paenibacillus larvae subsp. larvae B-3650] Length = 153 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 73/158 (46%), Gaps = 9/158 (5%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQA 75 + + +++ + E F V I ++ N L+++V++ +G + + DC +S+ Sbjct: 1 MSSSIKSIVEEMMKDYLTENGFELVDIEYVKEGSNWFLRVYVDKLEGGIDIEDCGRISEY 60 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LD ++ I Y LEVSSPG +RP+ + D + G V + ++ G++ Sbjct: 61 LSAKLDEKDPIPTAYFLEVSSPGAERPLKKPQDIAKSVGKHVFITTYEPVDNAKEFEGEL 120 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + ++ K+ +I ++ + SARL Sbjct: 121 LSFDGETLVVKTAKKKS--------SIPYEKVASARLA 150 >gi|312127898|ref|YP_003992772.1| hypothetical protein Calhy_1688 [Caldicellulosiruptor hydrothermalis 108] gi|311777917|gb|ADQ07403.1| protein of unknown function DUF150 [Caldicellulosiruptor hydrothermalis 108] Length = 151 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 80/156 (51%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQAIS 77 + + +++P++E F V I +E L++++++ G +T+ DC+ +S+ +S Sbjct: 2 SKITKKVEELVKPILERYGFDLVDIEFKKEGKSYFLRVYIDKP-GGITIDDCQLVSEELS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD+ + I Y LEVSSPG+DRP+V DF+R G VV + ++ K+ G+++ Sbjct: 61 EKLDIVDPIPFSYYLEVSSPGVDRPLVTDRDFVRNRGRVVDVFLNQPFLNRTKITGELVE 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 +E L +K I I +++ +L Sbjct: 121 KNEKSLVLIVDKEK--------IDIPVENIKKVKLA 148 >gi|71281315|ref|YP_268926.1| hypothetical protein CPS_2201 [Colwellia psychrerythraea 34H] gi|91208404|sp|Q482U1|RIMP_COLP3 RecName: Full=Ribosome maturation factor rimP gi|71147055|gb|AAZ27528.1| conserved hypothetical protein [Colwellia psychrerythraea 34H] Length = 151 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 72/155 (46%), Gaps = 10/155 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 ++ +++P +EE I N +L++F++ + + + DC E+S+ + Sbjct: 3 KFEQKLTDLLRPAVEETGKTLHGIEYISAGNNSVLRLFIDH-ENGINVDDCAEVSRQVGA 61 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 ILDVE+ I Y LEVSSPG+DRP+ + F G + +I + ++K G ++ Sbjct: 62 ILDVEDPISSEYSLEVSSPGVDRPLFELAHFQEVIGETINVKISMPLNGRRKFKGPLVAI 121 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 +E + + ++ ++ A L+ Sbjct: 122 ENDTLIVEVD--------SIDYELAISNIDKANLV 148 >gi|259503124|ref|ZP_05746026.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] gi|259168990|gb|EEW53485.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] Length = 171 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 41/176 (23%), Positives = 78/176 (44%), Gaps = 11/176 (6%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVER 59 M + ++ R+ + ++ ++ P+++E F I ++ K+ L++++++ Sbjct: 1 MLALFIANNMEVKRMST---VTEVVTDLVTPILDEHHFYLYDIEFVKEGKSWYLRVYIDK 57 Query: 60 DDGNMTLRDCEELSQAISPILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 DG +TL DC +S +S LD + I Y LEVSSPG +RP+ + D+ R H + Sbjct: 58 -DGGITLNDCAAVSDQLSEALDNVEPDPIPQAYFLEVSSPGAERPLKNEDDYQRAVNHYI 116 Query: 118 ACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + K+ G ++ S L + Q+ I + ARL Sbjct: 117 HVSLYQQLAGKKVYEGTLVELSAKEMTLNFMDK----TRHRQVVIDRSKVAQARLA 168 >gi|56478753|ref|YP_160342.1| hypothetical protein ebA5838 [Aromatoleum aromaticum EbN1] gi|81356614|sp|Q5NZS3|RIMP_AZOSE RecName: Full=Ribosome maturation factor rimP gi|56314796|emb|CAI09441.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1] Length = 142 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 44/151 (29%), Positives = 80/151 (52%), Gaps = 12/151 (7%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 D+ +++ V+ + F V K L+++F++ + +T+ DC +S ++ + +VE Sbjct: 2 DVEGLVEQVVSGLGFELVDFETSP-KGRLMRVFID-IERGVTVDDCATVSNQLTRVFEVE 59 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 N+ + RLEVSSPG+DRP+ + +DF R+ G V + + G+++ IG + G SE Sbjct: 60 NV--DYDRLEVSSPGLDRPLKKTADFERFAGDEVQVRLRMPIGNQRNFIGVLEGLSEGVV 117 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L +K +A FD + ARL+ Sbjct: 118 RLHTDK--------GDVAFPFDEIEKARLVP 140 >gi|21282877|ref|NP_645965.1| hypothetical protein MW1148 [Staphylococcus aureus subsp. aureus MW2] gi|49483428|ref|YP_040652.1| hypothetical protein SAR1241 [Staphylococcus aureus subsp. aureus MRSA252] gi|49486104|ref|YP_043325.1| hypothetical protein SAS1199 [Staphylococcus aureus subsp. aureus MSSA476] gi|57651835|ref|YP_186141.1| hypothetical protein SACOL1284 [Staphylococcus aureus subsp. aureus COL] gi|82750866|ref|YP_416607.1| hypothetical protein SAB1127 [Staphylococcus aureus RF122] gi|87160896|ref|YP_493855.1| hypothetical protein SAUSA300_1158 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194975|ref|YP_499775.1| hypothetical protein SAOUHSC_01242 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221387|ref|YP_001332209.1| hypothetical protein NWMN_1175 [Staphylococcus aureus subsp. aureus str. Newman] gi|161509431|ref|YP_001575090.1| hypothetical protein USA300HOU_1197 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142499|ref|ZP_03566992.1| hypothetical protein SauraJ_12822 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253731884|ref|ZP_04866049.1| protein of hypothetical function DUF150 [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257425319|ref|ZP_05601744.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257427980|ref|ZP_05604378.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257430613|ref|ZP_05606995.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257433373|ref|ZP_05609731.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257436215|ref|ZP_05612262.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|258423894|ref|ZP_05686779.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|258452564|ref|ZP_05700570.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|262048157|ref|ZP_06021044.1| hypothetical protein SAD30_1933 [Staphylococcus aureus D30] gi|262051327|ref|ZP_06023550.1| hypothetical protein SA930_2049 [Staphylococcus aureus 930918-3] gi|282903820|ref|ZP_06311708.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus C160] gi|282905583|ref|ZP_06313438.1| hypothetical protein SDAG_01207 [Staphylococcus aureus subsp. aureus Btn1260] gi|282908558|ref|ZP_06316388.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910837|ref|ZP_06318640.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282914042|ref|ZP_06321829.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M899] gi|282916525|ref|ZP_06324283.1| hypothetical protein SATG_00018 [Staphylococcus aureus subsp. aureus D139] gi|282918964|ref|ZP_06326699.1| hypothetical protein SASG_00270 [Staphylococcus aureus subsp. aureus C427] gi|282920509|ref|ZP_06328230.1| conserved hypothetical protein [Staphylococcus aureus A9765] gi|282924087|ref|ZP_06331763.1| hypothetical protein SARG_01628 [Staphylococcus aureus subsp. aureus C101] gi|283770329|ref|ZP_06343221.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus H19] gi|283958008|ref|ZP_06375459.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus A017934/97] gi|284024258|ref|ZP_06378656.1| hypothetical protein Saura13_06684 [Staphylococcus aureus subsp. aureus 132] gi|293501074|ref|ZP_06666925.1| hypothetical protein SCAG_01604 [Staphylococcus aureus subsp. aureus 58-424] gi|293510036|ref|ZP_06668744.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M809] gi|293526622|ref|ZP_06671307.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M1015] gi|294848261|ref|ZP_06789008.1| hypothetical protein SKAG_00320 [Staphylococcus aureus A9754] gi|295427752|ref|ZP_06820384.1| UPF0090 protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|297208089|ref|ZP_06924520.1| protein of hypothetical function DUF150 [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297591290|ref|ZP_06949928.1| protein of hypothetical function DUF150 [Staphylococcus aureus subsp. aureus MN8] gi|300912170|ref|ZP_07129613.1| protein of hypothetical function DUF150 [Staphylococcus aureus subsp. aureus TCH70] gi|304381171|ref|ZP_07363824.1| protein of hypothetical function DUF150 [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|34222911|sp|Q8NWZ3|RIMP_STAAW RecName: Full=Ribosome maturation factor rimP gi|56749717|sp|Q6G9U8|RIMP_STAAS RecName: Full=Ribosome maturation factor rimP gi|56749746|sp|Q6GHH0|RIMP_STAAR RecName: Full=Ribosome maturation factor rimP gi|81694636|sp|Q5HGG6|RIMP_STAAC RecName: Full=Ribosome maturation factor rimP gi|91207999|sp|Q2YXK3|RIMP_STAAB RecName: Full=Ribosome maturation factor rimP gi|122540592|sp|Q2G2D3|RIMP_STAA8 RecName: Full=Ribosome maturation factor rimP gi|123486179|sp|Q2FHH3|RIMP_STAA3 RecName: Full=Ribosome maturation factor rimP gi|189038628|sp|A8Z3U5|RIMP_STAAT RecName: Full=Ribosome maturation factor rimP gi|205405730|sp|A6QGG5|RIMP_STAAE RecName: Full=Ribosome maturation factor rimP gi|21204316|dbj|BAB95013.1| conserved hypotehtical protein [Staphylococcus aureus subsp. aureus MW2] gi|49241557|emb|CAG40243.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49244547|emb|CAG42976.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57286021|gb|AAW38115.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus COL] gi|82656397|emb|CAI80816.1| conserved hypothetical protein [Staphylococcus aureus RF122] gi|87126870|gb|ABD21384.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202533|gb|ABD30343.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374187|dbj|BAF67447.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|160368240|gb|ABX29211.1| hypothetical protein USA300HOU_1197 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724294|gb|EES93023.1| protein of hypothetical function DUF150 [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257271776|gb|EEV03914.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257274821|gb|EEV06308.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257278741|gb|EEV09360.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257281466|gb|EEV11603.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257284497|gb|EEV14617.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|257845923|gb|EEV69952.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|257859782|gb|EEV82624.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|259160702|gb|EEW45723.1| hypothetical protein SA930_2049 [Staphylococcus aureus 930918-3] gi|259163723|gb|EEW48278.1| hypothetical protein SAD30_1933 [Staphylococcus aureus D30] gi|269940756|emb|CBI49138.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TW20] gi|282314059|gb|EFB44451.1| hypothetical protein SARG_01628 [Staphylococcus aureus subsp. aureus C101] gi|282316774|gb|EFB47148.1| hypothetical protein SASG_00270 [Staphylococcus aureus subsp. aureus C427] gi|282319012|gb|EFB49364.1| hypothetical protein SATG_00018 [Staphylococcus aureus subsp. aureus D139] gi|282322110|gb|EFB52434.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M899] gi|282325442|gb|EFB55751.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282327620|gb|EFB57903.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330875|gb|EFB60389.1| hypothetical protein SDAG_01207 [Staphylococcus aureus subsp. aureus Btn1260] gi|282594171|gb|EFB99158.1| conserved hypothetical protein [Staphylococcus aureus A9765] gi|282595438|gb|EFC00402.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus C160] gi|283460476|gb|EFC07566.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus H19] gi|283470480|emb|CAQ49691.1| protein LMOf2365_1338 [Staphylococcus aureus subsp. aureus ST398] gi|283790157|gb|EFC28974.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus A017934/97] gi|290920694|gb|EFD97757.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M1015] gi|291096079|gb|EFE26340.1| hypothetical protein SCAG_01604 [Staphylococcus aureus subsp. aureus 58-424] gi|291466980|gb|EFF09498.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M809] gi|294825061|gb|EFG41483.1| hypothetical protein SKAG_00320 [Staphylococcus aureus A9754] gi|295128110|gb|EFG57744.1| UPF0090 protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|296887332|gb|EFH26234.1| protein of hypothetical function DUF150 [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297576176|gb|EFH94892.1| protein of hypothetical function DUF150 [Staphylococcus aureus subsp. aureus MN8] gi|298694557|gb|ADI97779.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ED133] gi|300886416|gb|EFK81618.1| protein of hypothetical function DUF150 [Staphylococcus aureus subsp. aureus TCH70] gi|302332871|gb|ADL23064.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus JKD6159] gi|302751088|gb|ADL65265.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340154|gb|EFM06095.1| protein of hypothetical function DUF150 [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312438355|gb|ADQ77426.1| protein of hypothetical function DUF150 [Staphylococcus aureus subsp. aureus TCH60] gi|315194153|gb|EFU24546.1| hypothetical protein CGSSa00_05608 [Staphylococcus aureus subsp. aureus CGS00] gi|315198507|gb|EFU28836.1| hypothetical protein CGSSa01_02741 [Staphylococcus aureus subsp. aureus CGS01] gi|320140918|gb|EFW32765.1| hypothetical protein HMPREF9528_00535 [Staphylococcus aureus subsp. aureus MRSA131] gi|320144366|gb|EFW36132.1| hypothetical protein HMPREF9529_00249 [Staphylococcus aureus subsp. aureus MRSA177] gi|323441045|gb|EGA98752.1| hypothetical protein SAO11_0112 [Staphylococcus aureus O11] gi|323443914|gb|EGB01525.1| hypothetical protein SAO46_0024 [Staphylococcus aureus O46] gi|329313935|gb|AEB88348.1| Ribosome maturation factor rimP [Staphylococcus aureus subsp. aureus T0131] gi|329727856|gb|EGG64307.1| hypothetical protein SA21189_0300 [Staphylococcus aureus subsp. aureus 21189] gi|329733678|gb|EGG70006.1| hypothetical protein SA21193_0242 [Staphylococcus aureus subsp. aureus 21193] Length = 155 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 73/154 (47%), Gaps = 6/154 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 + + +++P++E+++F V + ++E L+I +++ +G + L DC S+ IS Sbjct: 2 SKITEQVEVIVKPIMEDLNFELVDVEYVKEGRDHFLRISIDK-EGGVDLNDCTLASEKIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +D + I Y L+V+SPG +RP+ ++ DF V + + +++ +G + Sbjct: 61 EAMDANDPIPEMYYLDVASPGAERPIKKEQDFQNAITKPVFVSLYVPIEGEKEWLGILQE 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 + ++ + I I D + AR Sbjct: 121 VNNETIVVQV----KIKARTKDIEIPRDKIAKAR 150 >gi|319637702|ref|ZP_07992468.1| hypothetical protein HMPREF0604_00091 [Neisseria mucosa C102] gi|317400857|gb|EFV81512.1| hypothetical protein HMPREF0604_00091 [Neisseria mucosa C102] Length = 143 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 74/149 (49%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI S++ + + + V L + + L+IF+++ +G +T+ DC +S +S + VE Sbjct: 2 DIQSILDKTLPGLGYELVDFELTAQGD--LRIFIDK-EGGITVEDCATVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +I + RLE+SSPG+DRP+ + +DF+R+ G + L ++ IG+I Sbjct: 59 DI--DYKRLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIDGQKNFIGRIESCENDIV 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + I ++ ARL Sbjct: 117 TVSFDGK--------TAQIELSNIDKARL 137 >gi|323141192|ref|ZP_08076093.1| hypothetical protein HMPREF9443_00865 [Phascolarctobacterium sp. YIT 12067] gi|322414335|gb|EFY05153.1| hypothetical protein HMPREF9443_00865 [Phascolarctobacterium sp. YIT 12067] Length = 187 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 78/151 (51%), Gaps = 1/151 (0%) Query: 11 YEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCE 70 E ++ + I++++ P++++ V + + EK+ L+IF+++ G + + DC+ Sbjct: 25 MEVKMMQAKEVEALITAMVDPLLQDTGLTLVDVEYVREKDWYLRIFLDKP-GGVEIDDCQ 83 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 +S+ ++ ILD E+ I Y LEVSSPGIDRP+ + DF G V + Sbjct: 84 MVSEKLTEILDAEDPIPDKYFLEVSSPGIDRPLKKDKDFEAAYGTKVDIMFYTPWEGMKN 143 Query: 131 LIGKIMGTSETGFFLEKEKRGEKDMNELQIA 161 L G ++ + ++K +G++ N +I Sbjct: 144 LTGILVAHDDEAVQVKKIIKGKEFKNPDRIE 174 >gi|146297078|ref|YP_001180849.1| hypothetical protein Csac_2073 [Caldicellulosiruptor saccharolyticus DSM 8903] gi|226701152|sp|A4XL73|RIMP_CALS8 RecName: Full=Ribosome maturation factor rimP gi|145410654|gb|ABP67658.1| protein of unknown function DUF150 [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 151 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 81/156 (51%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + + +++P++E+ F V I + K L++++++ G +T+ DC+ +S+ +S Sbjct: 2 SKVTKKVEELVKPILEKYGFDLVDIEFKKEGKKHFLRVYIDKP-GGITIDDCQLVSEELS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD+ + I Y LEVSSPG+DRP+V DF+R G VV + + KL G+++ Sbjct: 61 NKLDIVDPIPFSYYLEVSSPGVDRPLVNDRDFIRNKGRVVDVFLKQPIMNTTKLTGELVE 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 +E + + I+I F+++ ++ Sbjct: 121 KNEDVLIIMIDGE--------NISIPFENVKKVKVA 148 >gi|288817342|ref|YP_003431689.1| hypothetical protein HTH_0021 [Hydrogenobacter thermophilus TK-6] gi|288786741|dbj|BAI68488.1| hypothetical protein HTH_0021 [Hydrogenobacter thermophilus TK-6] gi|308750949|gb|ADO44432.1| protein of unknown function DUF150 [Hydrogenobacter thermophilus TK-6] Length = 157 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 79/157 (50%), Gaps = 7/157 (4%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 + + + + +P+I+ + F+ + E+ +L++ +++ DG +T+ DCEE+S+ Sbjct: 3 INEKSIVEKVRQLAEPIIKNLGFKLFDVEFKPERGWVLRVILDK-DGGITVNDCEEVSKR 61 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LDVE+II Y LEVSSPG+ R + + + + G ++ + + K++L G I Sbjct: 62 LSALLDVEDIIPTSYILEVSSPGLTRELTKPEHYEFFKGRLIRLVLREALEGKRELKGYI 121 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + E L ++ G+ + A L Sbjct: 122 VDVKEGILQLREKDSGKMFHT------PLSIVARAHL 152 >gi|241760269|ref|ZP_04758364.1| conserved hypothetical protein [Neisseria flavescens SK114] gi|261379746|ref|ZP_05984319.1| hypothetical protein NEISUBOT_03607 [Neisseria subflava NJ9703] gi|241319147|gb|EER55625.1| conserved hypothetical protein [Neisseria flavescens SK114] gi|284797424|gb|EFC52771.1| hypothetical protein NEISUBOT_03607 [Neisseria subflava NJ9703] Length = 143 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 74/149 (49%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI S++ + + + V L + + L++F+++ +G +T+ DC +S +S + VE Sbjct: 2 DIQSILDKTLPGLGYELVDFELTAQGD--LRVFIDK-EGGITVEDCATVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 +I + RLE+SSPG+DRP+ + +DF+R+ G + L ++ IG+I Sbjct: 59 DI--DYKRLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIDGQKNFIGRIESCENDIV 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + I ++ ARL Sbjct: 117 TVSFDGK--------TAQIELSNIDKARL 137 >gi|227364836|ref|ZP_03848883.1| protein of hypothetical function DUF150 [Lactobacillus reuteri MM2-3] gi|325682538|ref|ZP_08162055.1| protein of hypothetical function DUF150 [Lactobacillus reuteri MM4-1A] gi|227070099|gb|EEI08475.1| protein of hypothetical function DUF150 [Lactobacillus reuteri MM2-3] gi|324978377|gb|EGC15327.1| protein of hypothetical function DUF150 [Lactobacillus reuteri MM4-1A] Length = 162 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 72/158 (45%), Gaps = 8/158 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + ++ ++ P++++ F + ++ K+ L++++ DG +TL DC +S +S Sbjct: 7 SSVVETVTDLVTPILQDHDFYLYDLEFVKEGKSWYLRVYI-NKDGGITLEDCALVSDELS 65 Query: 78 PILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + I Y LEVSSPG +RP+ ++ D+ R H + + ++ G + Sbjct: 66 EALDNVEPDPIPQAYFLEVSSPGAERPLKKEEDYQRAIDHYIHISLYQQINGQKVYEGTL 125 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 S+ L+ + QI I + ARL Sbjct: 126 TQLSDKEITLDYLDK----TRHRQITIDRQKIAQARLA 159 >gi|167746759|ref|ZP_02418886.1| hypothetical protein ANACAC_01471 [Anaerostipes caccae DSM 14662] gi|167653719|gb|EDR97848.1| hypothetical protein ANACAC_01471 [Anaerostipes caccae DSM 14662] Length = 171 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 41/171 (23%), Positives = 81/171 (47%), Gaps = 10/171 (5%) Query: 6 FLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNM 64 F + + + G + ++ P+I+E F V + ++ N L+I+ ++ DG + Sbjct: 9 FAQKRRQGNLAGKAEIEQKTEELVTPIIDENHFELVDVEYVKEGANWYLRIYADK-DGGI 67 Query: 65 TLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS 124 ++ DC +S+A+ LD ++ I+ Y LEVSSPG+ RP+ ++ D+ R G V ++ + Sbjct: 68 SIDDCVLISRALEAKLDADDFIKDAYILEVSSPGLGRPLKKEKDYQRSIGQSVDIKLYKA 127 Query: 125 SGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +++ G + S+ L + S+ SARL + Sbjct: 128 IDKQKEFTGILKEYSKERIILSIGGTDQ--------EFETKSVASARLSLD 170 >gi|325981568|ref|YP_004293970.1| hypothetical protein NAL212_0881 [Nitrosomonas sp. AL212] gi|325531087|gb|ADZ25808.1| protein of unknown function DUF150 [Nitrosomonas sp. AL212] Length = 155 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 38/150 (25%), Positives = 77/150 (51%), Gaps = 12/150 (8%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + +++ + + + V++ LL+IFV++ + + + DC +S +S +L VEN Sbjct: 16 LEELLESTLHGLGYELVEVERSAHN-KLLRIFVDKAE-GICIDDCVTISNHLSRLLAVEN 73 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I + RLEVSSPG+DRP+ R++DF+R+ G + ++ + ++ +G + Sbjct: 74 I--DYGRLEVSSPGLDRPLRREADFIRFRGETIKLKLRIPLEGQKNFVGILREVDNGIIK 131 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIV 174 LE E + + + ++ ARL+ Sbjct: 132 LEIEGKL--------LDLELSNVGKARLVP 153 >gi|332686769|ref|YP_004456543.1| clustered with transcription termination protein NusA [Melissococcus plutonius ATCC 35311] gi|332370778|dbj|BAK21734.1| clustered with transcription termination protein NusA [Melissococcus plutonius ATCC 35311] Length = 157 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 73/158 (46%), Gaps = 8/158 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + ++ ++ P++E+ F + + ++ K+ L++F+++ G + + +C +S+ +S Sbjct: 2 SSIIETVTKLVTPILEKQQFELIDVEFIKEGKSWYLRVFIDKK-GGIDIEECAFVSEQLS 60 Query: 78 PILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + I Y LEVSSPG +RP+ + D+ G + + + ++ G + Sbjct: 61 EQLDSLEPDPIPQAYFLEVSSPGAERPLKNEHDYFNAIGEYIHLSLYQAVEGIKQFEGIL 120 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 E +E + + I+ ++ ARL Sbjct: 121 ESIDEEQVVIEV----KIKTQRKKYIINRKNIAKARLA 154 >gi|217967592|ref|YP_002353098.1| protein of unknown function DUF150 [Dictyoglomus turgidum DSM 6724] gi|259585754|sp|B8E2Y4|RIMP_DICTD RecName: Full=Ribosome maturation factor rimP gi|217336691|gb|ACK42484.1| protein of unknown function DUF150 [Dictyoglomus turgidum DSM 6724] Length = 156 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 48/157 (30%), Positives = 81/157 (51%), Gaps = 10/157 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M L + +++P+ E+ S+ V + E +L++++++ G +T+ DC +S+ IS Sbjct: 7 MELLKKLKDIVEPICEKYSYELVDLEYRREPHGWVLRVYIDKV-GGVTVEDCAYISEKIS 65 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD+++ I Y LEVSSPG+DRP+ RK DF R G V ++ K+K+ GKI Sbjct: 66 KELDIKDPIPHSYILEVSSPGLDRPLKRKRDFERHIGEKVNITLLEEIEGKKKVEGKIFK 125 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E L+ + + I + + A LIV Sbjct: 126 VDEKNVTLKVDDSL--------MVIPIEKIKKALLIV 154 >gi|302872116|ref|YP_003840752.1| hypothetical protein COB47_1477 [Caldicellulosiruptor obsidiansis OB47] gi|302574975|gb|ADL42766.1| protein of unknown function DUF150 [Caldicellulosiruptor obsidiansis OB47] Length = 151 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 81/156 (51%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + + +++P++E F V I + K+ L++++++ G +T+ DC+ +S+ +S Sbjct: 2 SKITKKVEELVKPILERYGFDLVDIEFKKEGKSHFLRVYIDKP-GGITIDDCQLVSEELS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD+ + I Y LEVSSPG+DRP+V DF+R G VV + ++ K+ G+++ Sbjct: 61 DKLDIADPIPFSYYLEVSSPGVDRPLVTDRDFIRNKGRVVDVFLKQPFLNRTKITGELVE 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 +E L +K I I +++ +L Sbjct: 121 KNEKSLVLIVDKEK--------IDIPVENVKKVKLA 148 >gi|169827164|ref|YP_001697322.1| hypothetical protein Bsph_1594 [Lysinibacillus sphaericus C3-41] gi|226734725|sp|B1HR01|RIMP_LYSSC RecName: Full=Ribosome maturation factor rimP gi|168991652|gb|ACA39192.1| UPF0090 protein [Lysinibacillus sphaericus C3-41] Length = 156 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 78/158 (49%), Gaps = 5/158 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 + I + +P+++E++ V I ++E L+++V+ +G + + C ++S+ +S Sbjct: 2 SKVPSLIEELAKPIVDELNLELVDIEFVKEGRNWFLRVYVDTPEGGIDIDQCAQVSERLS 61 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LD ++ I +Y LEVSSPG +RP+ + +DF + G + + D ++ G + Sbjct: 62 LLLDEKDPITQNYYLEVSSPGAERPLKKDADFEKAIGKFIYVKTYKPIKDMKEFQGYLTS 121 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 E +E ++ + I + + ARL + Sbjct: 122 YEEHTLVMEV----RIKTRKITVTIEQEKIALARLAID 155 >gi|225848028|ref|YP_002728191.1| hypothetical protein SULAZ_0194 [Sulfurihydrogenibium azorense Az-Fu1] gi|259645121|sp|C1DXS9|RIMP_SULAA RecName: Full=Ribosome maturation factor rimP gi|225644280|gb|ACN99330.1| conserved hypothetical protein [Sulfurihydrogenibium azorense Az-Fu1] Length = 147 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 9/156 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 M L + ++ P++E+ + V I + K +L+I++ + ++ DCE +SQ I Sbjct: 1 MKLEEKVKELLSPILEDRGLKLVDIEYITGKRPVLRIYIYNPE-GTSIDDCEYVSQRIGS 59 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 ILDVE++I+ Y LEVSSPG+DR ++ + G V + DK+ G + G Sbjct: 60 ILDVEDLIKTSYTLEVSSPGLDRKFKNIEEYNIFKGKDVVVKTKEPIEDKKIFKGILEGL 119 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + L+++ + + I D + +L Sbjct: 120 EDGIVKLKQDN--------IVVEIPLDKISQTKLDF 147 >gi|198282693|ref|YP_002219014.1| hypothetical protein Lferr_0553 [Acidithiobacillus ferrooxidans ATCC 53993] gi|259585660|sp|B5EMC8|RIMP_ACIF5 RecName: Full=Ribosome maturation factor rimP gi|198247214|gb|ACH82807.1| protein of unknown function DUF150 [Acidithiobacillus ferrooxidans ATCC 53993] Length = 153 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 10/157 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGN-MTLRDCEELSQAIS 77 + + I V ++ + LQ+F+E+D+ +T+ DC +S+ +S Sbjct: 3 NVEDRLYEGIAQQAGIAGCTLVDARMVRTGRAVALQVFIEKDETTAVTIEDCAAVSRQLS 62 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LDVEN I G YRLEVSSPG+DRP+ DF R+ G + + +++L G+++G Sbjct: 63 LWLDVENPIHGAYRLEVSSPGLDRPLKNLHDFERFKGSQAEIHLHGLTQGRRRLQGELLG 122 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + L E + + D + ARL+ Sbjct: 123 VEDQKIVL--------KNAEGRWTFALDDIHKARLVP 151 >gi|225023297|ref|ZP_03712489.1| hypothetical protein EIKCOROL_00150 [Eikenella corrodens ATCC 23834] gi|224943942|gb|EEG25151.1| hypothetical protein EIKCOROL_00150 [Eikenella corrodens ATCC 23834] Length = 141 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 76/149 (51%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI +V++ + + + V L + + L++F+++ + +T+ DC +S +S + VE Sbjct: 2 DIQAVLEKTLPGLGYELVDFELTAQGD--LRVFIDKPE-GITVEDCATVSNHLSRLFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 ++ + RLE+SSPG+DRP+ + +DF+R++G +V + L ++ IG I Sbjct: 59 DV--DYKRLEISSPGLDRPLKKAADFIRFSGSLVKLKTRLPVEGQKNFIGHIENFENDVL 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + AI ++ A L Sbjct: 117 TIAFDGK--------TAAIELSNIDRAHL 137 >gi|189183524|ref|YP_001937309.1| hypothetical protein OTT_0617 [Orientia tsutsugamushi str. Ikeda] gi|254806539|sp|B3CR92|RIMP_ORITI RecName: Full=Ribosome maturation factor rimP gi|189180295|dbj|BAG40075.1| hypothetical protein OTT_0617 [Orientia tsutsugamushi str. Ikeda] Length = 160 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 51/167 (30%), Positives = 92/167 (55%), Gaps = 9/167 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVER-DDGNMTLRDCEELSQAISPI 79 L I +I P + + ++ + ++ + K +L+I ++R D+ + + DC+ S+AIS + Sbjct: 2 LNDKIKELITPTAKALGYKVINVNFV-VKPAILKIVIDRFDEKKVKVLDCQAFSKAISAV 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVENII G Y LEV S GI+R ++ DF+++ G+ + ++V + + +K IG I Sbjct: 61 LDVENIIPGKYFLEVESAGIERSLMDLEDFIKFLGYTIQVKLVAAINENKKYIGVISNIK 120 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNY 186 L + + IAI +D++ A+++ TDE+ R NY Sbjct: 121 GQEITLNLQN-------DSTIAIDYDNIKVAKIVFTDEMFRQITKNY 160 >gi|153855239|ref|ZP_01996405.1| hypothetical protein DORLON_02419 [Dorea longicatena DSM 13814] gi|149752238|gb|EDM62169.1| hypothetical protein DORLON_02419 [Dorea longicatena DSM 13814] Length = 150 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 43/142 (30%), Positives = 73/142 (51%), Gaps = 2/142 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++ P++EE F V + ++ N L+ ++++ G + + DCE +S+ +S IL Sbjct: 3 EQKTEEILLPIVEEYGFELVDVEYVKEGSNWYLRAYIDKP-GGIGVNDCEVVSRRLSDIL 61 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D ++ IE Y LEVSSPG+ RP+ ++ DF R G V K++ G + E Sbjct: 62 DEKDYIEDSYILEVSSPGLGRPLKKEKDFKRSLGEEVEIRTYRMIDRKKEFTGILKDYDE 121 Query: 141 TGFFLEKEKRGEKDMNELQIAI 162 T +E E EK + +IA+ Sbjct: 122 TTVTIEMEDETEKTFEKSEIAL 143 >gi|116333945|ref|YP_795472.1| hypothetical protein LVIS_1339 [Lactobacillus brevis ATCC 367] gi|122269371|sp|Q03QT1|RIMP_LACBA RecName: Full=Ribosome maturation factor rimP gi|116099292|gb|ABJ64441.1| hypothetical protein LVIS_1339 [Lactobacillus brevis ATCC 367] Length = 157 Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 76/156 (48%), Gaps = 8/156 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + ++++ QP++ + F V + ++ K+ L++++++ G + + +C +S +S Sbjct: 4 VVETVTALAQPIVAQHQFELVDVEFVKEGKSWYLRLYIDKP-GGINIEECALVSDEVSEK 62 Query: 80 LD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +D + I Y LEVSSPG +RP+ + +DF + G + + G+ + G ++ Sbjct: 63 MDALDPDPIPQAYFLEVSSPGAERPLKKPADFEKAVGDYIHVSLYQKIGNSKVYEGTLLS 122 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + LE +G + I D++ ARL Sbjct: 123 LTADSLDLEVNLKGRIK----TLTIPRDAVAQARLA 154 >gi|298528713|ref|ZP_07016117.1| protein of unknown function DUF150 [Desulfonatronospira thiodismutans ASO3-1] gi|298512365|gb|EFI36267.1| protein of unknown function DUF150 [Desulfonatronospira thiodismutans ASO3-1] Length = 154 Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 67/156 (42%), Gaps = 11/156 (7%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE---KNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + + ++Q M + + + +L++FV+ + +++ C +LS+ +S Sbjct: 6 IKKQVEELVQTNCRLMGLEPWGMDFVPGTGKQRGVLRVFVDSPE-GVSIDQCADLSRQLS 64 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LDVE+++ G Y LEVSSPG++R R + GH V + ++ G + Sbjct: 65 VALDVEDLVPGSYNLEVSSPGLNRRFFRPEQMSGYTGHKVKITLKEPRDGRKNFTGTLQE 124 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 ++ + + +D + ARL+ Sbjct: 125 AENETISIQ-------TSPDCTWSFQWDEIDRARLV 153 >gi|293115578|ref|ZP_05792144.2| putative cytoplasmic protein [Butyrivibrio crossotus DSM 2876] gi|292808915|gb|EFF68120.1| putative cytoplasmic protein [Butyrivibrio crossotus DSM 2876] Length = 166 Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 2/149 (1%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELS 73 + + + +I P+IE F V + ++ + L+ ++++ G +T+ DC E+S Sbjct: 12 MAKREDIESKATELIMPIIESCGFELVDLEYVKEGSSKYLRAYIDKP-GGITVDDCAEVS 70 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 + S LD + I+ Y LEVSSPG+ RP + DF R V ++ + G Sbjct: 71 RPFSDKLDEADFIDEAYILEVSSPGLFRPFKKDKDFERNLMEEVELKLYRQVDHLKDYTG 130 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAI 162 + + +E E EK + +AI Sbjct: 131 LLKKFDKDTVTIELENGDEKTFDRSNLAI 159 >gi|315126156|ref|YP_004068159.1| hypothetical protein PSM_A1065 [Pseudoalteromonas sp. SM9913] gi|315014670|gb|ADT68008.1| hypothetical protein PSM_A1065 [Pseudoalteromonas sp. SM9913] Length = 141 Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 70/147 (47%), Gaps = 10/147 (6%) Query: 28 VIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 ++ P +E + F + + ++ L++++ +D +++ +C + S+ IS ILDVE+ I Sbjct: 1 MLTPAVEMLGFELHGLEFVQAGRHSTLRVYIAHED-GISVDNCADASRQISAILDVEDPI 59 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE 146 Y LEVSSPG+DRP+ ++ + + G V L ++ G ++ S L Sbjct: 60 TNEYDLEVSSPGVDRPLFKQDHYEQAQGEEVRVRTKLPQDGRRNFKGDLIAVSSDMITLS 119 Query: 147 KEKRGEKDMNELQIAISFDSLLSARLI 173 + + I ++ A +I Sbjct: 120 SDG--------AEHLIMLSNIERANII 138 >gi|91782987|ref|YP_558193.1| hypothetical protein Bxe_A2822 [Burkholderia xenovorans LB400] gi|296158770|ref|ZP_06841599.1| protein of unknown function DUF150 [Burkholderia sp. Ch1-1] gi|123358892|sp|Q140U8|RIMP_BURXL RecName: Full=Ribosome maturation factor rimP gi|91686941|gb|ABE30141.1| Conserved hypothetical protein [Burkholderia xenovorans LB400] gi|295890975|gb|EFG70764.1| protein of unknown function DUF150 [Burkholderia sp. Ch1-1] Length = 152 Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 71/151 (47%), Gaps = 9/151 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I+ + + + V + +L I++++ + + DCE++++ + +L VE Sbjct: 2 QLTELIETTVVGLGYELVDLERTGRG--MLCIYIDQP-AGIAIEDCEKVTRQLQHVLTVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DRP+ + +DF R+ G V + ++ G + Sbjct: 59 NI--DYERLEVSSPGLDRPLKKLADFERFAGSEVVITLKKPLDGRKSYRGILHAPQGETI 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 LE E + + + + ARL+ Sbjct: 117 GLEFEGKE----GAAMLDFTLADMDKARLVP 143 >gi|295396944|ref|ZP_06807066.1| protein of hypothetical function DUF150 [Aerococcus viridans ATCC 11563] gi|294974797|gb|EFG50502.1| protein of hypothetical function DUF150 [Aerococcus viridans ATCC 11563] Length = 179 Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 75/157 (47%), Gaps = 7/157 (4%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + + ++QP+IE++ F I ++ K+ L+I+V++ G + + DC +S+ IS Sbjct: 24 KVTDQMQEIVQPIIEDLGFILFDIEFVKEGKSWFLRIYVDKPGGGIAIEDCVTVSEHISE 83 Query: 79 ILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 +D + I Y LEVSSPG +RP+ D G V + ++ + G+++ Sbjct: 84 AVDQLETDPIPQAYYLEVSSPGAERPLKNDDDVQAAIGEWVFLSFYQAIDGQKNIQGRLL 143 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 S+ + +E + + K + + ++ RL Sbjct: 144 SVSDDAYEVETKDKTRKVA----VTVEKSNVSLIRLA 176 >gi|297569837|ref|YP_003691181.1| protein of unknown function DUF150 [Desulfurivibrio alkaliphilus AHT2] gi|296925752|gb|ADH86562.1| protein of unknown function DUF150 [Desulfurivibrio alkaliphilus AHT2] Length = 155 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 79/158 (50%), Gaps = 10/158 (6%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAI 76 + L + +++PV+ + ++ E +L++ ++ DD + L DC +S+ + Sbjct: 5 ESALIQRLHELLEPVVLDHGLELAELQFRREAPGWVLRLIIDADD-GVGLDDCTRVSREV 63 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 S +L+VE+ IE + LEVSSPG+DRP+ R+ D++R G + + +IG++ Sbjct: 64 SHLLEVEDPIEQAFTLEVSSPGLDRPLRRERDYVRCRGKMAKIVCTRQIEGQNVVIGRLG 123 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ +E + + + ++ ARL+V Sbjct: 124 EVADGAVTVETD--------AGPVKVPLAAVRRARLVV 153 >gi|284048696|ref|YP_003399035.1| protein of unknown function DUF150 [Acidaminococcus fermentans DSM 20731] gi|283952917|gb|ADB47720.1| protein of unknown function DUF150 [Acidaminococcus fermentans DSM 20731] Length = 153 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 1/146 (0%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 + ++ + P++EE V + + E++ L++F+++ G + + DC +S A Sbjct: 1 MDKKKITERVTDLAAPIVEEAGLELVDVEYVRERDWFLRVFIDKA-GGIDIDDCSAVSNA 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 ++ LD E+ I+ Y LEVSSPGIDRP+ + D G V K++L + Sbjct: 60 LAKKLDEEDFIKEKYYLEVSSPGIDRPLKKDKDLEAHYGQKVDLAFFAPYEGKKQLTAVL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIA 161 LE K+ + + IA Sbjct: 120 KSHDAEKLVLEDAKKKKLAIERKLIA 145 >gi|292669519|ref|ZP_06602945.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] gi|292648842|gb|EFF66814.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] Length = 163 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 42/173 (24%), Positives = 77/173 (44%), Gaps = 15/173 (8%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEM-SFRSVQISLLEEKNLLLQIFVER 59 M + F+ YE R + + + + ++ + V + + E++ L+I++++ Sbjct: 1 MRTHSFIT--YEKRESMSAKIEERVEEIARGLLVDAPELELVDVEYVRERDWYLRIYIDK 58 Query: 60 DDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVAC 119 +G + + DC+ LS+ + +LD E+ I Y LEVSSPG+DR + + DF R G V Sbjct: 59 -EGGIDIEDCQGLSERLEEMLDREDFIPDAYILEVSSPGLDRVLRKPRDFEREQGKAVDV 117 Query: 120 EIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + K++ G + G L+ I I D + RL Sbjct: 118 TLYAPFEGKKQWTGTLAGYDGEMLTLDDG-----------IRIPLDQISQIRL 159 >gi|82702987|ref|YP_412553.1| hypothetical protein Nmul_A1866 [Nitrosospira multiformis ATCC 25196] gi|91208392|sp|Q2Y7W0|RIMP_NITMU RecName: Full=Ribosome maturation factor rimP gi|82411052|gb|ABB75161.1| Protein of unknown function DUF150 [Nitrosospira multiformis ATCC 25196] Length = 142 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 38/151 (25%), Positives = 76/151 (50%), Gaps = 12/151 (7%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 D+ +++P + + + V + LL+IF+++ G + + DC +S +S L VE Sbjct: 2 DLYELLEPTLAGLGYELVDLERSPG-GKLLRIFIDKP-GGVNVDDCVTVSNHLSRFLAVE 59 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 N+ + RLEVSSPG+DRP+ + +DF+R+ G V + ++ ++ +G + + Sbjct: 60 NV--DYDRLEVSSPGLDRPLKKTADFIRFAGESVKLRLRVALQGQRNFVGILREVKDGIL 117 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 LE + + + + +L RL+ Sbjct: 118 KLEVDGKM--------LDLELTNLEKVRLVP 140 >gi|238927233|ref|ZP_04658993.1| protein of hypothetical function DUF150 [Selenomonas flueggei ATCC 43531] gi|238884908|gb|EEQ48546.1| protein of hypothetical function DUF150 [Selenomonas flueggei ATCC 43531] Length = 163 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 40/173 (23%), Positives = 82/173 (47%), Gaps = 15/173 (8%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEM-SFRSVQISLLEEKNLLLQIFVER 59 ME+ F+ YE R + + +++ ++ ++ + V + ++E++ L++++++ Sbjct: 1 MEAHSFIT--YEKRESMSAKIEERVEEMVRGLLTDLPAIELVDVEYVKERDSYLRVYIDK 58 Query: 60 DDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVAC 119 G + + DC+ LS+ + +LD E+ I Y LEVSSPG+DR + ++ DF R +G V Sbjct: 59 -TGGIDIDDCQSLSERLEEMLDREDFIPDAYILEVSSPGLDRVLRKERDFTREHGRTVDV 117 Query: 120 EIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + K++ G + G L+ + I + RL Sbjct: 118 TLYAPFEGKKQWTGTLAGYDGETLTLDDG-----------VQIPMKQVSQVRL 159 >gi|222529040|ref|YP_002572922.1| hypothetical protein Athe_1048 [Caldicellulosiruptor bescii DSM 6725] gi|254799910|sp|B9MR45|RIMP_ANATD RecName: Full=Ribosome maturation factor rimP gi|222455887|gb|ACM60149.1| protein of unknown function DUF150 [Caldicellulosiruptor bescii DSM 6725] Length = 151 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 81/156 (51%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + + +++P++E F V I + K+ L++++++ G +T+ DC+ +S+ +S Sbjct: 2 SKITKKVEELVKPILERYGFDLVDIEFKKEGKSHFLRVYIDKP-GGITIDDCQLVSEELS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD+ + I Y LEVSSPG+DRP+V DF+R G VV + ++ ++ G+++ Sbjct: 61 EKLDIVDPIPFSYYLEVSSPGVDRPLVTDRDFIRNKGKVVDVFLNQPFLNRTRITGELVE 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 +E L +K I I +++ +L Sbjct: 121 KNEKSLILIVDKEK--------IVIPIENIKKVKLA 148 >gi|188996514|ref|YP_001930765.1| protein of unknown function DUF150 [Sulfurihydrogenibium sp. YO3AOP1] gi|259645122|sp|B2V8D8|RIMP_SULSY RecName: Full=Ribosome maturation factor rimP gi|188931581|gb|ACD66211.1| protein of unknown function DUF150 [Sulfurihydrogenibium sp. YO3AOP1] Length = 147 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 77/156 (49%), Gaps = 9/156 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 M + + ++ P++EE F+ V I + K +L+I++ + ++ DCE +S+ I Sbjct: 1 MKVEEKVKELLLPILEERDFKLVDIEFIPSKRPILRIYIYNPE-GTSIDDCEWVSKRIGA 59 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LDVE++I+ Y LEVSSPG+DR ++ + G V + +K+ G ++G Sbjct: 60 LLDVEDLIDKAYILEVSSPGLDRKFKNIEEYDIFKGRDVVVKTKEPINEKKVFKGTLLGL 119 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + NE + I F+++ +L Sbjct: 120 EDEKVKI--------KENEETVEIPFENVSQTKLDF 147 >gi|153954052|ref|YP_001394817.1| hypothetical protein CKL_1427 [Clostridium kluyveri DSM 555] gi|219854665|ref|YP_002471787.1| hypothetical protein CKR_1322 [Clostridium kluyveri NBRC 12016] gi|189038691|sp|A5N838|RIMP_CLOK5 RecName: Full=Ribosome maturation factor rimP gi|254800038|sp|B9E1J8|RIMP_CLOK1 RecName: Full=Ribosome maturation factor rimP gi|146346933|gb|EDK33469.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555] gi|219568389|dbj|BAH06373.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 154 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 47/159 (29%), Positives = 80/159 (50%), Gaps = 11/159 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + +I+P+++ ++F + N L+IF+++++GN++L DCE +S+A+S I Sbjct: 6 LVERVLKLIKPIVDNLNFELYHLEFKREGNNNYLRIFIDKEEGNISLEDCEAVSRAVSDI 65 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD E+ I Y LEVSSPGI+R + R+ G V I K+K GK++ Sbjct: 66 LDREDPIRDPYYLEVSSPGIERTLYTHEHLKRYIGFNVIVNIQGLLKGKKKYQGKLLSFD 125 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDEL 178 E+ + E +I I + + L D+L Sbjct: 126 ESVLRVSCEGE--------EIVIPKSKISTVNL--KDDL 154 >gi|325267088|ref|ZP_08133757.1| protein of hypothetical function DUF150 [Kingella denitrificans ATCC 33394] gi|324981441|gb|EGC17084.1| protein of hypothetical function DUF150 [Kingella denitrificans ATCC 33394] Length = 145 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 76/149 (51%), Gaps = 11/149 (7%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 D+ +++ + M + V + L + +L++F+++ +G +T+ DC +S +S + VE Sbjct: 2 DLQQILETTLPGMGYELVDVELTAQG--ILRVFIDK-EGGITVEDCATVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 ++ + LE+SSPG+DRP+ + +DF+R+ G +V + L ++ IG+I E Sbjct: 59 DV--DYKHLEISSPGLDRPLKKAADFVRFTGSMVKLKTRLPVDGQKNFIGRIESFDEAAQ 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + I ++ AR+ Sbjct: 117 TIVL------AFDGKTAQIELSNVDKARI 139 >gi|154497679|ref|ZP_02036057.1| hypothetical protein BACCAP_01655 [Bacteroides capillosus ATCC 29799] gi|150273177|gb|EDN00322.1| hypothetical protein BACCAP_01655 [Bacteroides capillosus ATCC 29799] Length = 151 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 63/156 (40%), Gaps = 10/156 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISP 78 + + ++ QP+ E + + E L++++++ +G + + DCE +S+ +S Sbjct: 3 KVTELVRALAQPIAAENGCSIWDVEYVREAGTWFLRVYLDK-EGGVNIDDCEAVSRPLSD 61 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LD + IEG Y LEVSS GIDR + F + G V + ++ +G + Sbjct: 62 ALDEADPIEGSYTLEVSSAGIDRVLRHPEHFDAFLGAEVEVRLYRPVEGRKDHVGLLKAY 121 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + + RL V Sbjct: 122 DNGDVTVTL--------PSGDVTFPKKDVAQVRLYV 149 >gi|315165483|gb|EFU09500.1| UPF0090 family protein [Enterococcus faecalis TX1302] Length = 185 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 77/154 (50%), Gaps = 8/154 (5%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL- 80 ++ ++ P++EE +F V++ ++ KN L++F+++ +G + + +C +S+ +S L Sbjct: 34 ETVTKLVTPILEEQNFELVEVEFVKEGKNWFLRVFIDK-EGGIDIEECAFVSEKLSEKLD 92 Query: 81 -DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 + I Y LEVSSPG +RP+ ++SD+ + G + + + ++++ G ++ Sbjct: 93 AMDPDPIPQAYFLEVSSPGAERPLKKESDYEQAVGKYIHISLYQAVDGEKQIEGTLVHLD 152 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + ++ ++ ARL Sbjct: 153 SEQLTLSV----KIKTRVNEMTFERKNIAKARLA 182 >gi|262197039|ref|YP_003268248.1| hypothetical protein Hoch_3856 [Haliangium ochraceum DSM 14365] gi|262080386|gb|ACY16355.1| protein of unknown function DUF150 [Haliangium ochraceum DSM 14365] Length = 209 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 40/180 (22%), Positives = 79/180 (43%), Gaps = 27/180 (15%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVER-------------D 60 + + + + + +PV + V +SL + + L+Q+F++ + Sbjct: 26 MRANDSMTEQLMRIAEPVCASAGYELVDLSLTQSRVGWLVQVFIDHMHSDETSTVAGGEE 85 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 ++L DCE +S+ +S +LDVE+ + Y LEVSSPG+DRP+ + F R+ GH V Sbjct: 86 ASEVSLEDCEHVSRELSAVLDVEDPLPFAYNLEVSSPGLDRPLRTVAHFQRFAGHEVKVR 145 Query: 121 IVLSSG--DKQKLIGKIMGTSET---GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + + ++ G++ S + + + D + SAR++ Sbjct: 146 LDGTGDATGRRNFKGRLEAVSAEAPASIVVNVDGAPH--------TLLIDDIESARVVPD 197 >gi|257869191|ref|ZP_05648844.1| conserved hypothetical protein [Enterococcus gallinarum EG2] gi|257803355|gb|EEV32177.1| conserved hypothetical protein [Enterococcus gallinarum EG2] Length = 157 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 72/146 (49%), Gaps = 8/146 (5%) Query: 31 PVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENI--IE 87 P++E +F V++ ++ K+ L++F+++ +G + + +C +S+ +S LD + I Sbjct: 14 PILEAQNFELVEVEFVKEGKSWFLRVFIDK-EGGIDIEECAFVSEQLSDKLDACDPDPIP 72 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LEVSSPG +RP+ ++ D+ R G + + +++ G + E ++ Sbjct: 73 QAYFLEVSSPGAERPLKKEEDYHRAVGEYIHLSLYQPVEGEKQFEGFLQSFDEEQLVIKI 132 Query: 148 EKRGEKDMNELQIAISFDSLLSARLI 173 E ++ I ++ ARL Sbjct: 133 ----RIKTREKELTIERKNIAKARLA 154 >gi|148263955|ref|YP_001230661.1| hypothetical protein Gura_1898 [Geobacter uraniireducens Rf4] gi|189030115|sp|A5GF83|RIMP_GEOUR RecName: Full=Ribosome maturation factor rimP gi|146397455|gb|ABQ26088.1| protein of unknown function DUF150 [Geobacter uraniireducens Rf4] Length = 159 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 43/165 (26%), Positives = 78/165 (47%), Gaps = 14/165 (8%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ + + VI + V + E ++L++FV++ +G + L DC +S+ Sbjct: 1 MAKVDVISRVTVLAEQVISSLGMELVDLEYKREGREMVLRLFVDK-EGGVNLDDCASVSR 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS-----GDKQ 129 +S +LDVE++I HY LEVSSPGIDRP+ + DF R+ G +V ++ Sbjct: 60 ELSEVLDVEDVISEHYSLEVSSPGIDRPLKKVEDFQRFKGRLVKIRTFEPLPDDAGNKRK 119 Query: 130 KLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +G++ G + + AI F+ + A L Sbjct: 120 TFLGELKGIENGVVLVALK-------EGQNAAIPFEKVAKANLEF 157 >gi|312622704|ref|YP_004024317.1| hypothetical protein Calkro_1646 [Caldicellulosiruptor kronotskyensis 2002] gi|312203171|gb|ADQ46498.1| protein of unknown function DUF150 [Caldicellulosiruptor kronotskyensis 2002] Length = 151 Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 81/156 (51%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + + +++P++E F V I + K+ L++++++ G +T+ DC+ +S+ +S Sbjct: 2 SKITKKVEELVKPILERYGFDLVDIEFKKEGKSHFLRVYIDKP-GGITIDDCQLVSEELS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD+ + I Y LEVSSPG+DRP+V DF+R G VV + ++ ++ G+++ Sbjct: 61 EKLDIVDPIPFSYYLEVSSPGVDRPLVTDRDFIRNKGKVVDVFLNQPFLNRTRITGELVE 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 +E L +K I I +++ +L Sbjct: 121 KNEKSLILIVDKEK--------IVIPVENIKKVKLA 148 >gi|227518529|ref|ZP_03948578.1| protein of hypothetical function DUF150 [Enterococcus faecalis TX0104] gi|227553055|ref|ZP_03983104.1| protein of hypothetical function DUF150 [Enterococcus faecalis HH22] gi|229546054|ref|ZP_04434779.1| protein of hypothetical function DUF150 [Enterococcus faecalis TX1322] gi|229550244|ref|ZP_04438969.1| protein of hypothetical function DUF150 [Enterococcus faecalis ATCC 29200] gi|293383161|ref|ZP_06629078.1| UPF0090 protein [Enterococcus faecalis R712] gi|293387685|ref|ZP_06632230.1| UPF0090 protein [Enterococcus faecalis S613] gi|307268538|ref|ZP_07549911.1| UPF0090 family protein [Enterococcus faecalis TX4248] gi|307273443|ref|ZP_07554688.1| UPF0090 family protein [Enterococcus faecalis TX0855] gi|307277606|ref|ZP_07558698.1| UPF0090 family protein [Enterococcus faecalis TX2134] gi|307279084|ref|ZP_07560142.1| UPF0090 family protein [Enterococcus faecalis TX0860] gi|307288431|ref|ZP_07568419.1| UPF0090 family protein [Enterococcus faecalis TX0109] gi|307291250|ref|ZP_07571134.1| UPF0090 family protein [Enterococcus faecalis TX0411] gi|312899342|ref|ZP_07758675.1| UPF0090 family protein [Enterococcus faecalis TX0470] gi|312904019|ref|ZP_07763187.1| UPF0090 family protein [Enterococcus faecalis TX0635] gi|312907250|ref|ZP_07766241.1| UPF0090 family protein [Enterococcus faecalis DAPTO 512] gi|312909868|ref|ZP_07768716.1| SP14.3 family protein [Enterococcus faecalis DAPTO 516] gi|312952266|ref|ZP_07771141.1| UPF0090 family protein [Enterococcus faecalis TX0102] gi|227074011|gb|EEI11974.1| protein of hypothetical function DUF150 [Enterococcus faecalis TX0104] gi|227177798|gb|EEI58770.1| protein of hypothetical function DUF150 [Enterococcus faecalis HH22] gi|229304682|gb|EEN70678.1| protein of hypothetical function DUF150 [Enterococcus faecalis ATCC 29200] gi|229308827|gb|EEN74814.1| protein of hypothetical function DUF150 [Enterococcus faecalis TX1322] gi|291079500|gb|EFE16864.1| UPF0090 protein [Enterococcus faecalis R712] gi|291082874|gb|EFE19837.1| UPF0090 protein [Enterococcus faecalis S613] gi|306497481|gb|EFM67014.1| UPF0090 family protein [Enterococcus faecalis TX0411] gi|306500602|gb|EFM69931.1| UPF0090 family protein [Enterococcus faecalis TX0109] gi|306504209|gb|EFM73421.1| UPF0090 family protein [Enterococcus faecalis TX0860] gi|306505871|gb|EFM75049.1| UPF0090 family protein [Enterococcus faecalis TX2134] gi|306509970|gb|EFM78995.1| UPF0090 family protein [Enterococcus faecalis TX0855] gi|306515134|gb|EFM83676.1| UPF0090 family protein [Enterococcus faecalis TX4248] gi|310626278|gb|EFQ09561.1| UPF0090 family protein [Enterococcus faecalis DAPTO 512] gi|310629650|gb|EFQ12933.1| UPF0090 family protein [Enterococcus faecalis TX0102] gi|310632495|gb|EFQ15778.1| UPF0090 family protein [Enterococcus faecalis TX0635] gi|311289826|gb|EFQ68382.1| SP14.3 family protein [Enterococcus faecalis DAPTO 516] gi|311293493|gb|EFQ72049.1| UPF0090 family protein [Enterococcus faecalis TX0470] gi|315027495|gb|EFT39427.1| UPF0090 family protein [Enterococcus faecalis TX2137] gi|315030926|gb|EFT42858.1| UPF0090 family protein [Enterococcus faecalis TX4000] gi|315034082|gb|EFT46014.1| UPF0090 family protein [Enterococcus faecalis TX0017] gi|315036750|gb|EFT48682.1| UPF0090 family protein [Enterococcus faecalis TX0027] gi|315145576|gb|EFT89592.1| UPF0090 family protein [Enterococcus faecalis TX2141] gi|315147749|gb|EFT91765.1| UPF0090 family protein [Enterococcus faecalis TX4244] gi|315151450|gb|EFT95466.1| UPF0090 family protein [Enterococcus faecalis TX0012] gi|315153229|gb|EFT97245.1| UPF0090 family protein [Enterococcus faecalis TX0031] gi|315155992|gb|EFU00009.1| UPF0090 family protein [Enterococcus faecalis TX0043] gi|315157836|gb|EFU01853.1| UPF0090 family protein [Enterococcus faecalis TX0312] gi|315160338|gb|EFU04355.1| UPF0090 family protein [Enterococcus faecalis TX0645] gi|315166761|gb|EFU10778.1| UPF0090 family protein [Enterococcus faecalis TX1341] gi|315169948|gb|EFU13965.1| UPF0090 family protein [Enterococcus faecalis TX1342] gi|315174356|gb|EFU18373.1| UPF0090 family protein [Enterococcus faecalis TX1346] gi|315575676|gb|EFU87867.1| UPF0090 family protein [Enterococcus faecalis TX0309B] gi|315578366|gb|EFU90557.1| UPF0090 family protein [Enterococcus faecalis TX0630] gi|315579880|gb|EFU92071.1| UPF0090 family protein [Enterococcus faecalis TX0309A] gi|327534891|gb|AEA93725.1| protein of hypothetical function DUF150 [Enterococcus faecalis OG1RF] gi|329577095|gb|EGG58568.1| hypothetical protein HMPREF9520_01115 [Enterococcus faecalis TX1467] Length = 185 Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 77/154 (50%), Gaps = 8/154 (5%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL- 80 ++ ++ P++EE +F V++ ++ KN L++F+++ +G + + +C +S+ +S L Sbjct: 34 ETVTKLVTPILEEQNFELVEVEFVKEGKNWFLRVFIDK-EGGIDIEECAFVSEKLSEKLD 92 Query: 81 -DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 + I Y LEVSSPG +RP+ ++SD+ + G + + + ++++ G ++ Sbjct: 93 AMDPDPIPQAYFLEVSSPGAERPLKKESDYEQAVGKYIHISLYQAVDGEKQIEGTLVHLD 152 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + ++ ++ ARL Sbjct: 153 SEQLTLSV----KIKTRVKEMTFERKNIAKARLA 182 >gi|189424725|ref|YP_001951902.1| hypothetical protein Glov_1666 [Geobacter lovleyi SZ] gi|226736404|sp|B3EAE4|RIMP_GEOLS RecName: Full=Ribosome maturation factor rimP gi|189420984|gb|ACD95382.1| protein of unknown function DUF150 [Geobacter lovleyi SZ] Length = 159 Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 81/165 (49%), Gaps = 14/165 (8%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 + +++QP+++ M V++ + ++ LL++F+++ D + L DC E+S+ Sbjct: 1 MSATDPIQRVETLLQPILDAMGLELVELEFKKVGRSYLLRVFIDKPD-GVNLDDCAEVSR 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD-----KQ 129 +S LDVE+ I Y LEVSSPG+DRP+ ++ DF+R+ G + + D ++ Sbjct: 60 ELSVQLDVEDCIASRYTLEVSSPGLDRPLKKEQDFIRYQGRLAVVKTTELLKDEKGSPRK 119 Query: 130 KLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +G + G + + + Q I +D + A L Sbjct: 120 TFLGFLEGVEDGEVMIRLK-------EGPQARIPWDKIAKAHLEF 157 >gi|325265379|ref|ZP_08132103.1| hypothetical protein HMPREF0240_04394 [Clostridium sp. D5] gi|324029380|gb|EGB90671.1| hypothetical protein HMPREF0240_04394 [Clostridium sp. D5] Length = 155 Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 73/142 (51%), Gaps = 2/142 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPIL 80 +++P++ + F V + ++E L+ ++++ G +T+ DCE +S+ S IL Sbjct: 8 EQQTEELLEPIVTGVGFELVDVEYVKEAGTWYLRAYIDKP-GGITVDDCEAVSRKFSDIL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D ++ IE Y EVSSPG+ RP+ ++ D+ R G V + + +++ +G + + Sbjct: 67 DEKDYIEDTYIFEVSSPGLGRPLKKEKDYRRSLGEEVEIKTYRAIDRQKEFVGILKDYDK 126 Query: 141 TGFFLEKEKRGEKDMNELQIAI 162 +E E + + +IA+ Sbjct: 127 DTVTIEYEDETTQVFEKSEIAL 148 >gi|332653589|ref|ZP_08419334.1| conserved hypothetical protein [Ruminococcaceae bacterium D16] gi|332518735|gb|EGJ48338.1| conserved hypothetical protein [Ruminococcaceae bacterium D16] Length = 151 Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 64/140 (45%), Gaps = 2/140 (1%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISP 78 + + + QP +E + ++E L+ ++++ +G +++ DCE +S+ +S Sbjct: 3 KVTEMAAQLAQPFVEAAGCSLWDVEYVKEAGEWYLRFYIDK-EGGVSINDCEAVSRPLSD 61 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LD + IEG Y LEVSS G DR + + F ++ G V ++ + ++ +G + Sbjct: 62 ALDEADPIEGSYTLEVSSAGADRALKKPEHFAQFQGAEVEVKLYRARDGRKDYVGLLESY 121 Query: 139 SETGFFLEKEKRGEKDMNEL 158 + L K + Sbjct: 122 EDGDVTLNVGGAPMKFEKKE 141 >gi|218665765|ref|YP_002424885.1| lipoprotein, putative [Acidithiobacillus ferrooxidans ATCC 23270] gi|259585659|sp|B7J4D2|RIMP_ACIF2 RecName: Full=Ribosome maturation factor rimP gi|218517978|gb|ACK78564.1| lipoprotein, putative [Acidithiobacillus ferrooxidans ATCC 23270] Length = 150 Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 10/156 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGN-MTLRDCEELSQAISP 78 + + I V ++ + LQ+F+E+D+ +T+ DC +S+ +S Sbjct: 1 MEDRLYEGIAQQAGIAGCTLVDARMVRTGRAVALQVFIEKDETTAVTIEDCAAVSRQLSL 60 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LDVEN I G YRLEVSSPG+DRP+ DF R+ G + + +++L G+++G Sbjct: 61 WLDVENPIHGAYRLEVSSPGLDRPLKNLHDFERFKGSQAEIHLHGLTQGRRRLQGELLGV 120 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + L E + + D + ARL+ Sbjct: 121 EDQKIVL--------KNAEGRWTFALDDIHKARLVP 148 >gi|95929629|ref|ZP_01312371.1| protein of unknown function DUF150 [Desulfuromonas acetoxidans DSM 684] gi|95134326|gb|EAT15983.1| protein of unknown function DUF150 [Desulfuromonas acetoxidans DSM 684] Length = 187 Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 49/164 (29%), Positives = 88/164 (53%), Gaps = 13/164 (7%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 D + + + +P++EE V I + LL++F+++ G + L DC + S+ Sbjct: 26 MSDEAVLNKVIELAEPILEEQGLELVDIEFFSQGSEWLLRLFIDKP-GGVNLDDCADCSR 84 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG------DK 128 +S ILDVE +IE YRLEVSSPGIDRP+ +++DF R+ G +V + + + + Sbjct: 85 ELSLILDVEEVIEVAYRLEVSSPGIDRPLKKEADFERFKGEMVRAKTLQAIDPDLRGYQR 144 Query: 129 QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + IG+++G + F+E+ + ++ + DSL + L Sbjct: 145 KTFIGELLGLEDDVVFIEQNDK-----EGGRVELPLDSLETINL 183 >gi|326388031|ref|ZP_08209635.1| hypothetical protein Y88_0399 [Novosphingobium nitrogenifigens DSM 19370] gi|326207532|gb|EGD58345.1| hypothetical protein Y88_0399 [Novosphingobium nitrogenifigens DSM 19370] Length = 197 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 55/177 (31%), Positives = 92/177 (51%), Gaps = 17/177 (9%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISL-----LEEKNLLLQIFVERDDGN-MTLRDCE 70 M I V++P + + F V+++L + ++ LQ+ ER + + + DC Sbjct: 10 VRMADIARIIEVVEPEAKALGFDLVRVALFGKTEVGDEEHTLQVMAERPETGQLLIEDCA 69 Query: 71 ELSQAISPILDV-----ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS 125 ELS+ IS +D E++IE YRLEVSSPGIDRP+ R DF W GH E+ Sbjct: 70 ELSRRISDRMDQLEEAGEDLIEDAYRLEVSSPGIDRPLTRPKDFAGWVGHEARIELKDLI 129 Query: 126 GDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS 182 +++ G+++G + E+ + + A+ FD + A+L++TD+L+ AS Sbjct: 130 DRRKRYRGELVGFDPATNTISIEE------DAVVYAVPFDLVAHAKLVLTDKLIAAS 180 >gi|187933637|ref|YP_001885467.1| hypothetical protein CLL_A1269 [Clostridium botulinum B str. Eklund 17B] gi|226695891|sp|B2TJ51|RIMP_CLOBB RecName: Full=Ribosome maturation factor rimP gi|187721790|gb|ACD23011.1| conserved hypothetical protein [Clostridium botulinum B str. Eklund 17B] Length = 153 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 83/158 (52%), Gaps = 10/158 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQ 74 L + +++P++EE+S+ + ++E L+I++++++ +++L DCE++S+ Sbjct: 1 MRKDMLLEKVEVLVKPIVEELSYELYYLEYVKENGEYYLRIYIDKEEDSISLNDCEKVSR 60 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 +S ILDVE+ IE Y LEVSSPG++R + ++ F ++ G V S +K+ G Sbjct: 61 RVSEILDVEDPIEDSYYLEVSSPGLNRGLYKEEHFKKFIGREVLVRFNGSLEGMKKIQGI 120 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + ++ EK+ + I + + A L Sbjct: 121 LKEADNEFITVQGEKK---------LKIPTEKIKGANL 149 >gi|251780527|ref|ZP_04823447.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084842|gb|EES50732.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 153 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 83/158 (52%), Gaps = 10/158 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQ 74 L + +++P++EE+S+ + ++E L+I++++++ +++L DCE++S+ Sbjct: 1 MRKDMLLEKVEVLVKPIVEELSYELYYLEYVKENGEYYLRIYIDKEEDSISLNDCEKVSR 60 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 +S +LDVE+ IE Y LEVSSPG++R + ++ F ++ G V S +K+ G Sbjct: 61 RVSEMLDVEDPIEDSYYLEVSSPGLNRGLYKEEHFKKFIGREVLVRFNGSLEGMKKIQGI 120 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + +E EK ++ I + + A L Sbjct: 121 LKDADNEFITVEAEK---------ELKIPTEKIKGANL 149 >gi|188589052|ref|YP_001920614.1| hypothetical protein CLH_1220 [Clostridium botulinum E3 str. Alaska E43] gi|226696282|sp|B2V4G5|RIMP_CLOBA RecName: Full=Ribosome maturation factor rimP gi|188499333|gb|ACD52469.1| conserved hypothetical protein [Clostridium botulinum E3 str. Alaska E43] Length = 153 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 82/158 (51%), Gaps = 10/158 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQ 74 L + +++P++EE+S+ + ++E L+I++++++ +++L DCE++S+ Sbjct: 1 MRKDMLLEKVEVLVKPIVEELSYELYYLEYVKENGEYYLRIYIDKEEDSISLNDCEKVSR 60 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 +S ILDVE+ IE Y LEVSSPG++R + ++ F ++ G V S +K+ G Sbjct: 61 RVSEILDVEDPIEDSYYLEVSSPGLNRGLYKEEHFKKFIGREVLVRFNGSLEGMKKIQGI 120 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + +E E ++ I + + A L Sbjct: 121 LKEAENEFITVE---------GEKELKIPTEKIKGANL 149 >gi|257452236|ref|ZP_05617535.1| putative cytoplasmic protein [Fusobacterium sp. 3_1_5R] gi|317058779|ref|ZP_07923264.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R] gi|313684455|gb|EFS21290.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R] Length = 153 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 77/162 (47%), Gaps = 11/162 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 + I ++ P EE+ V + +++ ++++VE+ +G++ L DC LS I Sbjct: 2 ESVVQKIEKIVIPAAEELGLSLVDVEYMQDGGYWYVRVYVEKLEGDVNLEDCASLSGKIE 61 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 V+ +I+ + LEVSSPGI+RP+ ++SDF+R+ G + + +K+ + G + Sbjct: 62 D--AVDQLIDKKFFLEVSSPGIERPLKKESDFIRFTGEKIFVALKHKLNEKRNIEGILRA 119 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELL 179 LE + ++ I F + A L+ + Sbjct: 120 YENQSLLLEVDGE--------ELQIPFSEVKKAHLVFDFDEF 153 >gi|170696461|ref|ZP_02887587.1| protein of unknown function DUF150 [Burkholderia graminis C4D1M] gi|209520194|ref|ZP_03268965.1| protein of unknown function DUF150 [Burkholderia sp. H160] gi|295676259|ref|YP_003604783.1| protein of unknown function DUF150 [Burkholderia sp. CCGE1002] gi|307730030|ref|YP_003907254.1| hypothetical protein BC1003_2000 [Burkholderia sp. CCGE1003] gi|323525723|ref|YP_004227876.1| hypothetical protein BC1001_1380 [Burkholderia sp. CCGE1001] gi|170138614|gb|EDT06816.1| protein of unknown function DUF150 [Burkholderia graminis C4D1M] gi|209499353|gb|EDZ99437.1| protein of unknown function DUF150 [Burkholderia sp. H160] gi|295436102|gb|ADG15272.1| protein of unknown function DUF150 [Burkholderia sp. CCGE1002] gi|307584565|gb|ADN57963.1| protein of unknown function DUF150 [Burkholderia sp. CCGE1003] gi|323382725|gb|ADX54816.1| protein of unknown function DUF150 [Burkholderia sp. CCGE1001] Length = 152 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 70/151 (46%), Gaps = 9/151 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ +I+ + + + V + +L I++++ + + DCE++++ + +L VE Sbjct: 2 QLTELIETTVVGLGYELVDLERTGRG--MLCIYIDQP-AGIAIEDCEKVTRQLQHVLTVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DRP+ + +DF R+ G + ++ G + Sbjct: 59 NI--DYERLEVSSPGLDRPLKKLADFERFAGSEAVITLKKPLDGRKSYRGILHAPQGETI 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 LE E + + + + ARL+ Sbjct: 117 GLEFEGKE----GAAMLDFTLADMDKARLVP 143 >gi|226313024|ref|YP_002772918.1| hypothetical protein BBR47_34370 [Brevibacillus brevis NBRC 100599] gi|254801675|sp|C0ZF55|RIMP_BREBN RecName: Full=Ribosome maturation factor rimP gi|226095972|dbj|BAH44414.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 152 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 9/154 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + G ++ +I P++EE+ V I + N L++F++ + GN+ + DC +S+ +S Sbjct: 2 SKVTGIVTELITPIVEEVGLELVDIEYKKEGSNWFLRVFIDNETGNIDIDDCRLVSEKLS 61 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + I Y LEVSSPG +RP+ + DF + G V G+++ Sbjct: 62 EKLDEVDPIPTAYFLEVSSPGAERPLRKDKDFTKAVGRNVHITTKEPIEGATTFEGELVS 121 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 + + + IS + + +AR Sbjct: 122 YEDGKLTV--------KEAKKTYVISQEQIDTAR 147 >gi|158320556|ref|YP_001513063.1| hypothetical protein Clos_1524 [Alkaliphilus oremlandii OhILAs] gi|259585693|sp|A8MHI0|RIMP_ALKOO RecName: Full=Ribosome maturation factor rimP gi|158140755|gb|ABW19067.1| protein of unknown function DUF150 [Alkaliphilus oremlandii OhILAs] Length = 154 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 81/148 (54%), Gaps = 2/148 (1%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 + ++ P+I+ +F V + + N L+I++++ G +TL DC+++S+ Sbjct: 1 MAKNRVEKITERLVMPIIQNENFELVDLEYKKEGSNWYLRIYIDKP-GGITLDDCQKVSE 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 + LD E+ I +Y LEVSSPG+DRP+ + SDF+R+ G +V ++ + + + G+ Sbjct: 60 QLGEELDREDPISENYFLEVSSPGLDRPLKKDSDFIRFAGEIVEVKLYEALNGNKVIEGE 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAI 162 ++G E + G ++ + ++A+ Sbjct: 120 LVGLEENMIKINVANVGLLELPKEKVAL 147 >gi|163791588|ref|ZP_02185989.1| hypothetical protein CAT7_03409 [Carnobacterium sp. AT7] gi|159873137|gb|EDP67240.1| hypothetical protein CAT7_03409 [Carnobacterium sp. AT7] Length = 157 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 69/156 (44%), Gaps = 8/156 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 + ++ ++QP++E F V I ++E N L++++++ + + L DC +S+ IS Sbjct: 2 SNVVETVTEIVQPIVERNQFELVDIEFVKEGQNWFLRVYIDKPE-GIDLEDCALVSEQIS 60 Query: 78 PILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +D + I Y LEVSSPG +RP+ ++ D+ G + + ++ G + Sbjct: 61 QHMDKIDPDPIPQAYFLEVSSPGAERPLKKEQDYTDSIGEYIHISLYEPVDGEKVYEGTL 120 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 ++ L I S + AR Sbjct: 121 KEVNDETLTLTI----RVKTRVKDIDFSRKIIAKAR 152 >gi|262374025|ref|ZP_06067302.1| conserved hypothetical protein [Acinetobacter junii SH205] gi|262311036|gb|EEY92123.1| conserved hypothetical protein [Acinetobacter junii SH205] Length = 174 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 39/179 (21%), Positives = 74/179 (41%), Gaps = 23/179 (12%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERD-------------- 60 + + +I P + I L K LL+I++++ Sbjct: 1 MKLSNKSQALHDLIAPAVAACGVDLWGIEFLPQGKRSLLRIYIDKPVDENAEPILNEDGE 60 Query: 61 ---DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + ++DC ++Q + +LDV + I G Y LEVSSPG DRP + + + G V Sbjct: 61 LEQGRGIGVQDCVLVTQQVGAMLDVHDPISGEYALEVSSPGWDRPFFQLNQLPAYIGQQV 120 Query: 118 ACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 A ++ + +++K K++ ++ E G+ + I +++ A LI D Sbjct: 121 ALRLIAAVENRRKFQAKLLSVDLENELIQVEVEGK-----HVLEIDSNNIDKANLIYQD 174 >gi|317484450|ref|ZP_07943363.1| hypothetical protein HMPREF0179_00714 [Bilophila wadsworthia 3_1_6] gi|316924310|gb|EFV45483.1| hypothetical protein HMPREF0179_00714 [Bilophila wadsworthia 3_1_6] Length = 205 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 66/178 (37%), Gaps = 20/178 (11%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVE-------------RDD- 61 I+ ++ P+ + + L + +I+V+ DD Sbjct: 1 MSQPDRIEFITELVTPLAASLGLAVWGVELGGAARPIARIYVDVLPGAEPAPSEKASDDD 60 Query: 62 ---GNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVA 118 +T+ C ELS+ LDVE+ ++ LE+SSPG+ RP + + G + Sbjct: 61 LLPQGVTIDQCAELSRLAGLALDVEDPFATNWTLEISSPGLQRPFFKIDQLRNYVGRELE 120 Query: 119 CEIVLSSG---DKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + ++K G + ++ F L K ++ I++ + A L+ Sbjct: 121 VVLAAPLDTWPGRKKFSGVLAAVADEEFTLSLPDTSRKAEEPEEVTIAWPFVRKATLV 178 >gi|18310672|ref|NP_562606.1| hypothetical protein CPE1690 [Clostridium perfringens str. 13] gi|110799296|ref|YP_696377.1| hypothetical protein CPF_1944 [Clostridium perfringens ATCC 13124] gi|168211422|ref|ZP_02637047.1| conserved hypothetical protein [Clostridium perfringens B str. ATCC 3626] gi|168214477|ref|ZP_02640102.1| conserved hypothetical protein [Clostridium perfringens CPE str. F4969] gi|168216977|ref|ZP_02642602.1| conserved hypothetical protein [Clostridium perfringens NCTC 8239] gi|182626379|ref|ZP_02954133.1| conserved hypothetical protein [Clostridium perfringens D str. JGS1721] gi|34223128|sp|Q8XJR4|RIMP_CLOPE RecName: Full=Ribosome maturation factor rimP gi|122958819|sp|Q0TPR3|RIMP_CLOP1 RecName: Full=Ribosome maturation factor rimP gi|18145353|dbj|BAB81396.1| conserved hypothetical protein [Clostridium perfringens str. 13] gi|110673943|gb|ABG82930.1| conserved hypothetical protein [Clostridium perfringens ATCC 13124] gi|170710586|gb|EDT22768.1| conserved hypothetical protein [Clostridium perfringens B str. ATCC 3626] gi|170714055|gb|EDT26237.1| conserved hypothetical protein [Clostridium perfringens CPE str. F4969] gi|177908330|gb|EDT70878.1| conserved hypothetical protein [Clostridium perfringens D str. JGS1721] gi|182380875|gb|EDT78354.1| conserved hypothetical protein [Clostridium perfringens NCTC 8239] Length = 154 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 80/158 (50%), Gaps = 9/158 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQ 74 L D+ ++ P+++E + I ++E N L++++E+ + ++LRDCE +S+ Sbjct: 1 MKKEQLVADLEALCAPIVKEKGYDLYHIEYVKENNEYYLRLYIEKPEERISLRDCEIVSR 60 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S +LD+E+ I+ Y LEVSSPG++R + F R+ G V S ++ + G Sbjct: 61 ALSDMLDIEDPIKDAYFLEVSSPGLNRRLHSDEHFNRFIGKEVFVGFKSSLSGRKNVKGI 120 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + E +E E +I + D + +A L Sbjct: 121 LKDVQENEIIVECEG--------NEIKVPKDKIKTANL 150 >gi|20807844|ref|NP_623015.1| hypothetical protein TTE1397 [Thermoanaerobacter tengcongensis MB4] gi|34222922|sp|Q8RA33|RIMP_THETN RecName: Full=Ribosome maturation factor rimP gi|20516406|gb|AAM24619.1| conserved hypothetical protein [Thermoanaerobacter tengcongensis MB4] Length = 151 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 70/136 (51%), Gaps = 2/136 (1%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + ++ P++EE +F V + + K+ L++++++ +G +TL DC+ +S+ +S Sbjct: 2 SRIEEITKELVMPILEENNFELVDVEYKKEGKHWYLRVYIDK-EGGITLDDCQLVSEYLS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + I+ Y LEVSSPG+DRP+ DF R G V + ++K G+++ Sbjct: 61 DRLDEVDPIDHSYILEVSSPGLDRPLKTPRDFKRNLGKEVEVSLYQPIDKRKKFTGELLE 120 Query: 138 TSETGFFLEKEKRGEK 153 + L E + Sbjct: 121 FTGDKIILLCEGEKRE 136 >gi|148284845|ref|YP_001248935.1| hypothetical protein OTBS_1566 [Orientia tsutsugamushi str. Boryong] gi|254800562|sp|A5CEN4|RIMP_ORITB RecName: Full=Ribosome maturation factor rimP gi|146740284|emb|CAM80659.1| conserved hypothetical protein [Orientia tsutsugamushi str. Boryong] Length = 160 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 52/167 (31%), Positives = 92/167 (55%), Gaps = 9/167 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVER-DDGNMTLRDCEELSQAISPI 79 L I +I P + + ++ + +S + K +L+I ++R D+ + + DC+ S+AIS + Sbjct: 2 LNDKIKELITPTAKTLGYKVINVSFI-VKPAILKIVIDRFDEKKVNVLDCQVFSKAISAV 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVENII G Y LEV S GI+R ++ DF+++ G+ + ++V + + +K IG I Sbjct: 61 LDVENIIPGKYFLEVESAGIERSLMDLEDFIKFLGYTIQVKLVAAINENKKYIGVISNIK 120 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNY 186 L + + IAI +D++ A+++ TDE+ R NY Sbjct: 121 GQEITLNLQN-------DSTIAIDYDNIKVAKIVFTDEMFRQITKNY 160 >gi|304384866|ref|ZP_07367212.1| protein of hypothetical function DUF150 [Pediococcus acidilactici DSM 20284] gi|304329060|gb|EFL96280.1| protein of hypothetical function DUF150 [Pediococcus acidilactici DSM 20284] Length = 168 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 73/158 (46%), Gaps = 8/158 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 + I+ + +PVIE F+ V++ ++E L+ ++++ G + + +C +S +S Sbjct: 13 SNVVEKITELARPVIESHDFQLVEVEFVKEGQGWFLRFYIDKV-GGINIEECAMVSDELS 71 Query: 78 PILDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +LD + + I Y LEVSSPG +RP+ K D G + + S ++ G + Sbjct: 72 ELLDQQDPDPIPQAYFLEVSSPGAERPLKTKEDLAAAVGEYIHISLYASINKQKVFEGYL 131 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L+ + ++ ++++ + ARL Sbjct: 132 KSFENDELVLDYLDK----TRHKELKVAYNQVAFARLA 165 >gi|88860546|ref|ZP_01135184.1| hypothetical protein PTD2_16017 [Pseudoalteromonas tunicata D2] gi|88817744|gb|EAR27561.1| hypothetical protein PTD2_16017 [Pseudoalteromonas tunicata D2] Length = 141 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 73/147 (49%), Gaps = 10/147 (6%) Query: 28 VIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 +++P +E + F + + ++ ++ L+++++ + + + +C ++S+ +S ILDVE+ I Sbjct: 1 MLEPAVEALGFELLGLEVVQAGRDSTLRLYIDHAN-GINVDNCADVSRQVSAILDVEDPI 59 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE 146 Y LEVSSPG+DRP+ + F++ G + L ++ G ++ L Sbjct: 60 TNEYNLEVSSPGLDRPLFKPEHFIKAQGEEIRLRTKLPQDGRRNFKGDLILLDGDMLTLR 119 Query: 147 KEKRGEKDMNELQIAISFDSLLSARLI 173 + + + + ++ A +I Sbjct: 120 IDNKD--------VMVMLGNVEKANII 138 >gi|238916822|ref|YP_002930339.1| hypothetical protein EUBELI_00890 [Eubacterium eligens ATCC 27750] gi|259585771|sp|C4Z5N3|RIMP_EUBE2 RecName: Full=Ribosome maturation factor rimP gi|238872182|gb|ACR71892.1| hypothetical protein EUBELI_00890 [Eubacterium eligens ATCC 27750] Length = 156 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 71/149 (47%), Gaps = 2/149 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + +IQPV+E + ++ + L++++++ +G +T+ DC+ +S+A + IL Sbjct: 8 EAKTTELIQPVVEANGVELFDVDYVKEGSDWYLRVYIDK-EGGVTIDDCQNVSRAFNEIL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D EN I+ Y EVSSPG+ RP+ ++ D+ + G ++ ++ ++ G + + Sbjct: 67 DRENYIDDQYIFEVSSPGLTRPLKKEKDYEKSIGRMIEIKLFSPVDKSKEYSGVLKEYDK 126 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLS 169 + + + I + + Sbjct: 127 DTVTISIDDVTKTFDRSNLAMIRWAFVDE 155 >gi|29375839|ref|NP_814993.1| hypothetical protein EF1270 [Enterococcus faecalis V583] gi|255973019|ref|ZP_05423605.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|255976058|ref|ZP_05426644.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|256618849|ref|ZP_05475695.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256762267|ref|ZP_05502847.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|256852912|ref|ZP_05558282.1| conserved hypothetical protein [Enterococcus faecalis T8] gi|256958758|ref|ZP_05562929.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|256962136|ref|ZP_05566307.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|256965335|ref|ZP_05569506.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|257078787|ref|ZP_05573148.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|257082769|ref|ZP_05577130.1| conserved hypothetical protein [Enterococcus faecalis E1Sol] gi|257085470|ref|ZP_05579831.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|257086617|ref|ZP_05580978.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|257089674|ref|ZP_05584035.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|257415888|ref|ZP_05592882.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG] gi|257419090|ref|ZP_05596084.1| conserved hypothetical protein [Enterococcus faecalis T11] gi|257422842|ref|ZP_05599832.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|294780120|ref|ZP_06745493.1| conserved hypothetical protein [Enterococcus faecalis PC1.1] gi|300859867|ref|ZP_07105955.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] gi|34222820|sp|Q835V2|RIMP_ENTFA RecName: Full=Ribosome maturation factor rimP gi|29343301|gb|AAO81063.1| conserved hypothetical protein [Enterococcus faecalis V583] gi|255964037|gb|EET96513.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|255968930|gb|EET99552.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|256598376|gb|EEU17552.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256683518|gb|EEU23213.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|256711371|gb|EEU26409.1| conserved hypothetical protein [Enterococcus faecalis T8] gi|256949254|gb|EEU65886.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|256952632|gb|EEU69264.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|256955831|gb|EEU72463.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|256986817|gb|EEU74119.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|256990799|gb|EEU78101.1| conserved hypothetical protein [Enterococcus faecalis E1Sol] gi|256993500|gb|EEU80802.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|256994647|gb|EEU81949.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|256998486|gb|EEU85006.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|257157716|gb|EEU87676.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG] gi|257160918|gb|EEU90878.1| conserved hypothetical protein [Enterococcus faecalis T11] gi|257164666|gb|EEU94626.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|294452795|gb|EFG21224.1| conserved hypothetical protein [Enterococcus faecalis PC1.1] gi|300850685|gb|EFK78434.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] gi|323480501|gb|ADX79940.1| conserved hypothetical protein [Enterococcus faecalis 62] Length = 157 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 77/154 (50%), Gaps = 8/154 (5%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL- 80 ++ ++ P++EE +F V++ ++ KN L++F+++ +G + + +C +S+ +S L Sbjct: 6 ETVTKLVTPILEEQNFELVEVEFVKEGKNWFLRVFIDK-EGGIDIEECAFVSEKLSEKLD 64 Query: 81 -DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 + I Y LEVSSPG +RP+ ++SD+ + G + + + ++++ G ++ Sbjct: 65 AMDPDPIPQAYFLEVSSPGAERPLKKESDYEQAVGKYIHISLYQAVDGEKQIEGTLVHLD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + ++ ++ ARL Sbjct: 125 SEQLTLSV----KIKTRVKEMTFERKNIAKARLA 154 >gi|323705404|ref|ZP_08116979.1| protein of unknown function DUF150 [Thermoanaerobacterium xylanolyticum LX-11] gi|323535306|gb|EGB25082.1| protein of unknown function DUF150 [Thermoanaerobacterium xylanolyticum LX-11] Length = 151 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 71/136 (52%), Gaps = 2/136 (1%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + ++ P IE+ F V + + N L++++++ DG ++L DC+ +S+ +S Sbjct: 2 SKIEELTRQLVTPAIEKNKFELVDVEYKKEGNNWYLRVYIDK-DGGVSLDDCQIISEYLS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + I+ Y LEVSSPGIDRP+ K DF ++ G +V + K+K G+++G Sbjct: 61 EKLDEVDPIDNSYILEVSSPGIDRPLKTKRDFEKFKGSLVEVSLYQPIDKKKKYEGELLG 120 Query: 138 TSETGFFLEKEKRGEK 153 + + + + Sbjct: 121 LEDDKVIIVDDGGKRE 136 >gi|253580824|ref|ZP_04858087.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847894|gb|EES75861.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 154 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 67/145 (46%), Gaps = 2/145 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++ P++E F V + ++E N L+ ++++ G +T+ DCE +S+A S L Sbjct: 8 EKRAEELLAPIVELNGFELVDVEYVKEAGNWYLRGYIDKP-GGITVNDCETVSRAFSDKL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D + IE Y +E+SSPG+DRP+ + DF R G +V +++ G + Sbjct: 67 DENDFIEDSYIMEISSPGLDRPLKKDKDFERNMGKLVEIRTYRPIEKQKEFCGILTAYDS 126 Query: 141 TGFFLEKEKRGEKDMNELQIAISFD 165 ++++ + I Sbjct: 127 NSVTIDEDGTERVFDKKDTALIRLA 151 >gi|172057850|ref|YP_001814310.1| hypothetical protein Exig_1841 [Exiguobacterium sibiricum 255-15] gi|226696098|sp|B1YI66|RIMP_EXIS2 RecName: Full=Ribosome maturation factor rimP gi|171990371|gb|ACB61293.1| protein of unknown function DUF150 [Exiguobacterium sibiricum 255-15] Length = 155 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 75/157 (47%), Gaps = 6/157 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + + + +P++E V + ++ + L++ +++ DG + L DC +++ +S Sbjct: 2 TNVTEKVEQLAKPIVEREGMELVDVEFVKEGADWFLRVSIDK-DGGVDLEDCVNINEKLS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 L+ ++ I+ Y L+V+SPG +RP+ + DF + G V + D + G ++ Sbjct: 61 EALNQDDPIDEPYYLDVASPGAERPLKKTEDFEKAIGKHVYIKTHDPVKDATEFEGTLLT 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 SE LE +L+I I + + ARL V Sbjct: 121 YSEEMLELEV----RVKTRKLKIEIPVNKIAMARLAV 153 >gi|319896983|ref|YP_004135178.1| hypothetical protein HIBPF06790 [Haemophilus influenzae F3031] gi|317432487|emb|CBY80844.1| conserved hypothetical protein [Haemophilus influenzae F3031] Length = 141 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 76/147 (51%), Gaps = 10/147 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 ++Q +E++ I + +++F+++ DG +T+ DC ++S+ +S ILDVE+ I Sbjct: 1 MLQDAVEDLGCELWGIECQRMGRFMTVRLFIDK-DGGVTVDDCADVSRQVSAILDVEDPI 59 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE 146 Y LEVSSPG+DRP+ F R+ G +A + + +++K GK+ + L Sbjct: 60 ADKYNLEVSSPGLDRPLFTLPQFERYIGQDIAVHLRIPVMERRKWQGKLERIEKDMITLI 119 Query: 147 KEKRGEKDMNELQIAISFDSLLSARLI 173 + + + + F ++ A ++ Sbjct: 120 VDDQEQILV--------FGNIQKANVV 138 >gi|169342738|ref|ZP_02863778.1| conserved hypothetical protein [Clostridium perfringens C str. JGS1495] gi|169299244|gb|EDS81314.1| conserved hypothetical protein [Clostridium perfringens C str. JGS1495] Length = 170 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 43/156 (27%), Positives = 80/156 (51%), Gaps = 9/156 (5%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAI 76 L D+ ++ P+++E + I ++E N L++++E+ + ++LRDCE +S+A+ Sbjct: 19 KEQLVADLEALCAPIVKEKGYDLYHIEYVKENNEYYLRLYIEKPEERISLRDCEIVSRAL 78 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 S +LD+E+ I+ Y LEVSSPG++R + F R+ G V S ++ + G + Sbjct: 79 SDMLDIEDPIKDAYFLEVSSPGLNRRLHSDEHFNRFIGKEVFVGFKSSLSGRKNVKGILK 138 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 E +E E +I + D + +A L Sbjct: 139 DVQENEIIVECEG--------NEIKVPKDKIKTANL 166 >gi|319776226|ref|YP_004138714.1| hypothetical protein HICON_18130 [Haemophilus influenzae F3047] gi|1574740|gb|AAC22931.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] gi|317450817|emb|CBY87039.1| conserved hypothetical protein [Haemophilus influenzae F3047] Length = 141 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 76/147 (51%), Gaps = 10/147 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 ++Q +E++ I + +++F+++ DG +T+ DC ++S+ +S ILDVE+ I Sbjct: 1 MLQDAVEDLGCELWGIECQRVGRFMTVRLFIDK-DGGVTVDDCADVSRQVSAILDVEDPI 59 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE 146 Y LEVSSPG+DRP+ F R+ G +A + + +++K GK+ + L Sbjct: 60 ADKYNLEVSSPGLDRPLFTLPQFERYIGQDIAVHLRIPVMERRKWQGKLERIEKDMITLI 119 Query: 147 KEKRGEKDMNELQIAISFDSLLSARLI 173 + + + + F ++ A ++ Sbjct: 120 VDDQEQILV--------FGNIQKANVV 138 >gi|28378677|ref|NP_785569.1| hypothetical protein lp_2044 [Lactobacillus plantarum WCFS1] gi|254556875|ref|YP_003063292.1| hypothetical protein JDM1_1708 [Lactobacillus plantarum JDM1] gi|300768188|ref|ZP_07078093.1| protein of hypothetical function DUF150 [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180816|ref|YP_003924944.1| hypothetical protein LPST_C1634 [Lactobacillus plantarum subsp. plantarum ST-III] gi|34223110|sp|Q88VK3|RIMP_LACPL RecName: Full=Ribosome maturation factor rimP gi|28271513|emb|CAD64418.1| unknown [Lactobacillus plantarum WCFS1] gi|254045802|gb|ACT62595.1| conserved hypothetical protein [Lactobacillus plantarum JDM1] gi|300494252|gb|EFK29415.1| protein of hypothetical function DUF150 [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046307|gb|ADN98850.1| hypothetical protein LPST_C1634 [Lactobacillus plantarum subsp. plantarum ST-III] Length = 158 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 68/161 (42%), Gaps = 8/161 (4%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQA 75 + I V ++ F V + + E + L++++++ G + + +C +S Sbjct: 1 MSSNVVETIQPVAAAIVSAHQFELVDLEFVREGQSWYLRLYIDKP-GGINIEECAMVSDE 59 Query: 76 ISPIL--DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 +S L + I Y LEVSSPG +RP+ +++DF G V + K+ G Sbjct: 60 LSEKLDAMEPDPIPQAYFLEVSSPGAERPLKKEADFQNAIGKYVHVGLYQKLDGKKIFEG 119 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + T ++ + + I+ + + ARL V Sbjct: 120 DLTAVTPTTLTIDYLDK----TRHKTVTINREQISQARLAV 156 >gi|314937504|ref|ZP_07844837.1| UPF0090 family protein [Enterococcus faecium TX0133a04] gi|314942163|ref|ZP_07849017.1| UPF0090 family protein [Enterococcus faecium TX0133C] gi|314947497|ref|ZP_07850912.1| UPF0090 family protein [Enterococcus faecium TX0082] gi|314951484|ref|ZP_07854533.1| UPF0090 family protein [Enterococcus faecium TX0133A] gi|314992574|ref|ZP_07857992.1| UPF0090 family protein [Enterococcus faecium TX0133B] gi|314995491|ref|ZP_07860591.1| UPF0090 family protein [Enterococcus faecium TX0133a01] gi|313590325|gb|EFR69170.1| UPF0090 family protein [Enterococcus faecium TX0133a01] gi|313592866|gb|EFR71711.1| UPF0090 family protein [Enterococcus faecium TX0133B] gi|313596324|gb|EFR75169.1| UPF0090 family protein [Enterococcus faecium TX0133A] gi|313599086|gb|EFR77931.1| UPF0090 family protein [Enterococcus faecium TX0133C] gi|313643145|gb|EFS07725.1| UPF0090 family protein [Enterococcus faecium TX0133a04] gi|313646047|gb|EFS10627.1| UPF0090 family protein [Enterococcus faecium TX0082] Length = 147 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 34/149 (22%), Positives = 74/149 (49%), Gaps = 8/149 (5%) Query: 28 VIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD--VEN 84 ++ P+++E +F V++ ++ K+ L++F+++ +G + + +C +S+ +S LD + Sbjct: 1 MVTPILDEQNFELVEVEFVKEGKSWFLRVFIDK-EGGIDIEECAFVSEKLSEKLDAADPD 59 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I Y LEVSSPG +RP+ ++SD+ + G V + +++ G + Sbjct: 60 PIPQAYFLEVSSPGAERPLKKESDYEKALGDYVHVSLYQPVDGEKQYEGFLQSFDAEQLT 119 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLI 173 L+ E ++ ++ ARL Sbjct: 120 LKI----RIKTREKELTFDRKNIAKARLA 144 >gi|226323232|ref|ZP_03798750.1| hypothetical protein COPCOM_01004 [Coprococcus comes ATCC 27758] gi|225208422|gb|EEG90776.1| hypothetical protein COPCOM_01004 [Coprococcus comes ATCC 27758] Length = 155 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 9/155 (5%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++ P++E+ F + ++ N L+ ++++ G + + DCE +S+ +S IL Sbjct: 8 EQKTEEILNPIVEKHGFDLWDVEYVKEGGNWYLRAYIDKP-GGIMVDDCEVVSRELSDIL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D ++ I+ Y LEVSSPG+ RP+ ++ DF R G V + +++ IG + + Sbjct: 67 DEKDFIDEAYILEVSSPGLGRPLKKEKDFARSLGEEVEVRTYRAIDRQKEFIGILKDYDK 126 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +E E + + RL Sbjct: 127 DTVTIEYED-------GETMTFDKADIALIRLAFD 154 >gi|312134895|ref|YP_004002233.1| hypothetical protein Calow_0865 [Caldicellulosiruptor owensensis OL] gi|311774946|gb|ADQ04433.1| protein of unknown function DUF150 [Caldicellulosiruptor owensensis OL] Length = 151 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 79/156 (50%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + + +++P++E F V I + K+ L++++++ G +T+ DC+ +S+ +S Sbjct: 2 SKITKKVEELVKPILERYGFDLVDIEFKKEGKSHFLRVYIDKP-GGITIDDCQLVSEELS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD+ + I Y LEVSSPG+DRP+V DF+R G +V + ++ K G+++ Sbjct: 61 ERLDIVDPIPFSYYLEVSSPGVDRPLVTDRDFIRNKGRLVEVFLSQPFLNRTKFTGELVE 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 ++ L +K I I + + ++ Sbjct: 121 KNDKFLVLIMDKEK--------IDIPIEKVKKVKIA 148 >gi|239636257|ref|ZP_04677259.1| conserved hypothetical protein [Staphylococcus warneri L37603] gi|239597612|gb|EEQ80107.1| conserved hypothetical protein [Staphylococcus warneri L37603] Length = 155 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 78/154 (50%), Gaps = 6/154 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 +A + +IQPV+++++F V+I ++ K+ L+I +++ +G + L DC S+ IS Sbjct: 2 SKIAEQVEPIIQPVLDDLNFELVEIEYVKEGKDHFLRISIDK-EGGVDLNDCTLASEKIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +D + I Y L+V+SPG +RP+ + H + + + ++++ +G + Sbjct: 61 EAMDENDPIPEMYYLDVASPGAERPIKNEKALKDAISHPIFISLYIPIENEKEWLGILKE 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 E +E +++ + I I + + AR Sbjct: 121 VKEDIILIEVKEKSKTK----TIEIPRNKIAKAR 150 >gi|330685687|gb|EGG97328.1| hypothetical protein SEVCU121_1926 [Staphylococcus epidermidis VCU121] Length = 155 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 78/154 (50%), Gaps = 6/154 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 +A + +IQPV++E+SF V+I ++ K+ L+I +++ +G + L DC S+ IS Sbjct: 2 SKIAEQVEPIIQPVLDELSFELVEIEYVKEGKDHFLRISIDK-EGGVDLNDCTLASEKIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +D + I Y L+V+SPG +RP+ + H + + + ++++ +G + Sbjct: 61 EAMDANDPIPEMYYLDVASPGAERPIKNEKALKNAVSHPIFISLYVPIENEKEWLGILKE 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 E +E +++ + I I + + AR Sbjct: 121 VKEDIILIEVKEKSKTK----TIEIPRNKIAKAR 150 >gi|197117687|ref|YP_002138114.1| hypothetical protein Gbem_1299 [Geobacter bemidjiensis Bem] gi|226695910|sp|B5EI54|RIMP_GEOBB RecName: Full=Ribosome maturation factor rimP gi|197087047|gb|ACH38318.1| protein of unknown function DUF150 [Geobacter bemidjiensis Bem] Length = 160 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 78/165 (47%), Gaps = 13/165 (7%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ +I V + V + E +++++F+E+ +G + L DC ++S+ Sbjct: 1 MAKVDVVERVTEIIAEVGAPLGIELVDLEYKREGRDMVVRVFLEKREGGINLDDCADVSR 60 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS-----GDKQ 129 +S ILDVE+ + Y LEVSSPGI RP+ + +D+ R+ GH++ + ++ Sbjct: 61 QLSDILDVEDFMPERYTLEVSSPGICRPLKKVADYERFLGHLIKVKTFEMLADEAGNKRK 120 Query: 130 KLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 GK+ G ++ ++ + + D + A L Sbjct: 121 TFTGKLTGIADGVIGIDL-------TEGQKARVPLDKVAKANLEF 158 >gi|74316717|ref|YP_314457.1| hypothetical protein Tbd_0699 [Thiobacillus denitrificans ATCC 25259] gi|74056212|gb|AAZ96652.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC 25259] Length = 161 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 40/144 (27%), Positives = 80/144 (55%), Gaps = 13/144 (9%) Query: 29 IQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEG 88 ++PV+ + + V + LL+IF+++ G +T+ DC +S ++ + VENI Sbjct: 27 LEPVLAGLGYELVMLE--RAGRGLLRIFIDKP-GGVTIDDCVAVSNHLTHLFTVENI--D 81 Query: 89 HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKE 148 + RLEVSSPG+DRP+V+ D+ R+ G V ++ + ++++L G+++G L + Sbjct: 82 YDRLEVSSPGLDRPLVKPQDYARFAGEQVTLKLRVPMDNRRRLSGQLLGLESDAVKLVVD 141 Query: 149 KRGEKDMNELQIAISFDSLLSARL 172 R ++++ ++ +ARL Sbjct: 142 GR--------EMSVDLRNVDAARL 157 >gi|197303043|ref|ZP_03168091.1| hypothetical protein RUMLAC_01770 [Ruminococcus lactaris ATCC 29176] gi|197297898|gb|EDY32450.1| hypothetical protein RUMLAC_01770 [Ruminococcus lactaris ATCC 29176] Length = 155 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 72/155 (46%), Gaps = 9/155 (5%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++++P++ E+ F V + ++E L+ ++++ G + + DCE +S+ S IL Sbjct: 8 EQQTETLLEPIVTELGFELVDVEYVKEGGTWYLRAYIDKP-GGIAVDDCEAVSRRFSDIL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D ++ I Y EVSSPG+ RP+ ++ DF R G V + +++ +G + + Sbjct: 67 DEKDYIADSYVFEVSSPGLGRPLKKEKDFKRSLGEEVEIRTYRAIDRQKEFVGLLKAYDD 126 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + + E + + + RL + Sbjct: 127 STVTITYED-------DTEQTFDRGDIALIRLALD 154 >gi|257468348|ref|ZP_05632442.1| putative cytoplasmic protein [Fusobacterium ulcerans ATCC 49185] gi|317062621|ref|ZP_07927106.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] gi|313688297|gb|EFS25132.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] Length = 159 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 10/163 (6%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAI 76 + I +++ PV+ EM V I L++ ++I+VE +G++TL DC +S I Sbjct: 6 KENILKKIETIVTPVVNEMELSLVDIEYLQDGGYWYVRIYVENPEGDITLEDCAAISNKI 65 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 + + +IE + LEVSSPGI+RP+ + D++R+ G + D + G I Sbjct: 66 DEDI--DKLIEQRFFLEVSSPGIERPLKKIEDYIRFKGEKAKLSLKHKVDDNKNFEGIIT 123 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELL 179 ++ +LE E E + I F + A L+ E Sbjct: 124 DCKDSIIYLELED-------EKVMEIPFSEVRKANLVYEFEEF 159 >gi|229824125|ref|ZP_04450194.1| hypothetical protein GCWU000282_01429 [Catonella morbi ATCC 51271] gi|229786479|gb|EEP22593.1| hypothetical protein GCWU000282_01429 [Catonella morbi ATCC 51271] Length = 157 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 63/158 (39%), Gaps = 8/158 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + ++ I ++E V + ++ K+ L+I+ ++ + + DC +S+ IS Sbjct: 2 SAILDKVTPAITEIVEANGCYLVDMEYVKEGKSWFLRIYADKPGR-IDIDDCAAISEQIS 60 Query: 78 PILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + Y LEVSSPG +RP+ G V + + G + Sbjct: 61 EHLDSIKPDPFPEAYFLEVSSPGAERPLKTDQALREAIGEYVHLDYYAPQHGAKSHEGTL 120 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 ++ L + + K Q+ I ++ ARL Sbjct: 121 EAVTDDKVALTVQIKTVKK----QLEIERQAIAKARLA 154 >gi|167465393|ref|ZP_02330482.1| hypothetical protein Plarl_23005 [Paenibacillus larvae subsp. larvae BRL-230010] Length = 140 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 9/142 (6%) Query: 33 IEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYR 91 + E F V I ++ N L+++V++ +G + + DC +S+ +S LD ++ I Y Sbjct: 4 LTENGFELVDIEYVKEGSNWFLRVYVDKLEGGIDIEDCGRISEYLSAKLDEKDPIPTAYF 63 Query: 92 LEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRG 151 LEVSSPG +RP+ + D + G V + ++ G+++ ++ K+ Sbjct: 64 LEVSSPGAERPLKKPQDIAKSVGKHVFITTYEPVDNAKEFEGELLSFDGETLVVKTAKKK 123 Query: 152 EKDMNELQIAISFDSLLSARLI 173 +I ++ + SARL Sbjct: 124 S--------SIPYEKVASARLA 137 >gi|296185353|ref|ZP_06853763.1| hypothetical protein CLCAR_0776 [Clostridium carboxidivorans P7] gi|296050187|gb|EFG89611.1| hypothetical protein CLCAR_0776 [Clostridium carboxidivorans P7] Length = 155 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 89/159 (55%), Gaps = 9/159 (5%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELS 73 + L +++++++P++ E+++ + L+ K+ L+I++++++ ++L+DCE++S Sbjct: 1 MMNKKILIDELTNLVKPIVTELNYDLYYLELVREGKDNYLRIYIDKENEGISLQDCEKVS 60 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 +A+S +LDV++ I+ Y LEVSSPGI+R + ++ G+ V I K+K G Sbjct: 61 RAVSEMLDVKDPIKEGYYLEVSSPGIERILHTDEHLQKYTGNDVVVNISGLLNGKKKYEG 120 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +++ + ++ E +I+I + + + L Sbjct: 121 QLVNFNNEELNIKVEDE--------EISIPREKISTVNL 151 >gi|237757009|ref|ZP_04585464.1| conserved hypothetical protein [Sulfurihydrogenibium yellowstonense SS-5] gi|237690827|gb|EEP59980.1| conserved hypothetical protein [Sulfurihydrogenibium yellowstonense SS-5] Length = 147 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 9/156 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 M + + ++ P++EE F+ V I + K +L+I++ + ++ DCE +S+ I Sbjct: 1 MKVEEKVKELLLPILEERDFKLVDIEFIPSKRPILRIYIYNPE-GTSIDDCEWVSKRIGA 59 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LDVE++I+ Y LEVSSPG+DR ++ + G V + +K+ G ++G Sbjct: 60 LLDVEDLIDKAYILEVSSPGLDRKFKNIEEYDIFKGRDVVIKTKEPINEKKVFKGTLLGL 119 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + NE + I +++ +L Sbjct: 120 EDEKVKI--------KENEETVEIPLENVSQTKLDF 147 >gi|167758064|ref|ZP_02430191.1| hypothetical protein CLOSCI_00402 [Clostridium scindens ATCC 35704] gi|167663961|gb|EDS08091.1| hypothetical protein CLOSCI_00402 [Clostridium scindens ATCC 35704] Length = 155 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 39/142 (27%), Positives = 71/142 (50%), Gaps = 2/142 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPIL 80 +++ P++EE F V + ++E L+ ++++ G + + DCE +S+ +S IL Sbjct: 8 EQKTEAILMPIVEEHGFELVDVEYVKEGGTWYLRAYIDKP-GGINVDDCEVVSRRLSDIL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D ++ IE Y LEVSSPG+ RP+ ++ DF R G V +++ G + + Sbjct: 67 DEKDYIEEAYILEVSSPGLGRPLKKEKDFKRSLGEEVDVRTYRMIEKQKEFTGLLKDYDD 126 Query: 141 TGFFLEKEKRGEKDMNELQIAI 162 +E E K + IA+ Sbjct: 127 ATVTIEMEDGTLKTFEKSDIAL 148 >gi|296113982|ref|YP_003627920.1| hypothetical protein MCR_1770 [Moraxella catarrhalis RH4] gi|295921676|gb|ADG62027.1| conserved hypothetical protein [Moraxella catarrhalis RH4] gi|326559306|gb|EGE09733.1| hypothetical protein E9G_09360 [Moraxella catarrhalis 7169] gi|326564318|gb|EGE14548.1| hypothetical protein E9K_04722 [Moraxella catarrhalis 103P14B1] gi|326568243|gb|EGE18325.1| hypothetical protein E9U_09405 [Moraxella catarrhalis BC8] gi|326569944|gb|EGE19991.1| hypothetical protein E9Q_01306 [Moraxella catarrhalis BC1] gi|326570022|gb|EGE20068.1| hypothetical protein E9S_06263 [Moraxella catarrhalis BC7] gi|326573672|gb|EGE23630.1| hypothetical protein EA1_08342 [Moraxella catarrhalis O35E] gi|326574705|gb|EGE24641.1| hypothetical protein E9Y_05110 [Moraxella catarrhalis 101P30B1] Length = 165 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 18/172 (10%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGN------MTLRD 68 +++ +I P + I + + LL+I++E N +T+ D Sbjct: 1 MKPSSKIAELTELIAPAVAACGVDLWGIEFMPQGRKSLLRIYIESLPENRAAGEHVTIED 60 Query: 69 CEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG-- 126 C ++ +S +LDV + I G Y LEVSSPG DRP+ + + G + ++ + G Sbjct: 61 CSAVNHQVSGVLDVHDPIAGEYVLEVSSPGFDRPLFTREQVAAYVGETINLRLIHAIGSG 120 Query: 127 --DKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 ++K++G++ E + E + + I+FDS+ A L+ D Sbjct: 121 DTKRRKVVGRLTCVGEDSMTVITEDKL-------EFNIAFDSVDKAHLVYED 165 >gi|326572880|gb|EGE22865.1| hypothetical protein E9W_08250 [Moraxella catarrhalis CO72] Length = 165 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 18/172 (10%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGN------MTLRD 68 +++ +I P + I + + LL+I++E N +T+ D Sbjct: 1 MKPSSKIAELTELITPAVAACGVDLWGIEFMPQGRKSLLRIYIESLPENRAAGEHVTIED 60 Query: 69 CEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG-- 126 C ++ +S +LDV + I G Y LEVSSPG DRP+ + + G + ++ + G Sbjct: 61 CSAVNHQVSGVLDVHDPIAGEYVLEVSSPGFDRPLFTREQVAAYVGETINLRLIHAIGSG 120 Query: 127 --DKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 ++K++G++ E + E + + I+FDS+ A L+ D Sbjct: 121 DTKRRKVVGRLTCVGEDSMTVITEDKL-------EFNIAFDSVDKAHLVYED 165 >gi|110801637|ref|YP_698977.1| hypothetical protein CPR_1662 [Clostridium perfringens SM101] gi|123341718|sp|Q0SSD0|RIMP_CLOPS RecName: Full=Ribosome maturation factor rimP gi|110682138|gb|ABG85508.1| conserved hypothetical protein [Clostridium perfringens SM101] Length = 154 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 80/158 (50%), Gaps = 9/158 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQ 74 L D+ ++ P+++E + I ++E N L++++E+ + ++LRDCE +S+ Sbjct: 1 MKKEQLVADLEALCAPIVKEKGYDLYHIEYVKENNEYYLRLYIEKPEERISLRDCEIVSR 60 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S +LD+E+ I+ Y LEVSSPG++R + F R+ G + S ++ + G Sbjct: 61 ALSDMLDIEDPIKDAYFLEVSSPGLNRRLHSDEHFNRFIGKEIFVGFKSSLSGRKNVKGI 120 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + E +E E +I + D + +A L Sbjct: 121 LKDVQENEIIVECEG--------NEIKVPKDKIKTANL 150 >gi|37523057|ref|NP_926434.1| hypothetical protein glr3488 [Gloeobacter violaceus PCC 7421] gi|35214060|dbj|BAC91429.1| glr3488 [Gloeobacter violaceus PCC 7421] Length = 182 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 77/169 (45%), Gaps = 15/169 (8%) Query: 7 LHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMT 65 PR + ++++ +PV E++ + V ++ K L++ + Sbjct: 23 FFDGMNPR-----DIVEQVTALAEPVAEQLGLQLVAVAYQTHTKPATLRVDIRHPTEGTG 77 Query: 66 LRDCEELSQAISPILD-VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS 124 L DCE++S+A+ +LD +++I G Y LEVSSPG++R + +F+ + G V + Sbjct: 78 LDDCEKMSRALEALLDTRDDLIIGAYNLEVSSPGVERVLTTDREFMAFRGFPVMVKTFGP 137 Query: 125 SGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 K++ G+++ +L R ++A+ + +L+ Sbjct: 138 VDGKKQWEGRLLERDGENVYLTIAGR--------RVALPRPQVARVQLV 178 >gi|154506275|ref|ZP_02043013.1| hypothetical protein RUMGNA_03817 [Ruminococcus gnavus ATCC 29149] gi|153793414|gb|EDN75834.1| hypothetical protein RUMGNA_03817 [Ruminococcus gnavus ATCC 29149] Length = 155 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 73/142 (51%), Gaps = 2/142 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 +++P++ E F V + ++E N L+ ++++ G +T+ DCE +S+ S IL Sbjct: 8 EKQTEELLEPIVAEQGFELVDVEYVKEAGNWYLRAYIDKP-GGITVDDCEVVSRRFSDIL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D ++ IE Y EVSSPG+ RP+ ++ DF+R G V + +++ +G + + Sbjct: 67 DEKDYIEDSYIFEVSSPGLGRPLKKEKDFIRSVGQEVEIRTYRAINRQKEFVGILKEFDQ 126 Query: 141 TGFFLEKEKRGEKDMNELQIAI 162 + E + + +IA+ Sbjct: 127 NTVTISYEDDSTQTFEKSEIAL 148 >gi|270290315|ref|ZP_06196540.1| hypothetical protein HMPREF9024_00500 [Pediococcus acidilactici 7_4] gi|270281096|gb|EFA26929.1| hypothetical protein HMPREF9024_00500 [Pediococcus acidilactici 7_4] Length = 158 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 73/160 (45%), Gaps = 8/160 (5%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQA 75 + I+ + +PVIE F+ V++ ++E L+ ++++ G + + +C +S Sbjct: 1 MSSNVVEKITELARPVIESHDFQLVEVEFVKEGQGWFLRFYIDKV-GGINIEECAMVSDE 59 Query: 76 ISPILDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 +S +LD + + I Y LEVSSPG +RP+ K D G + + S ++ G Sbjct: 60 LSELLDQQDPDPIPQAYFLEVSSPGAERPLKTKEDLAAAVGEYIHISLYASINKQKVFEG 119 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + L+ + ++ ++++ + ARL Sbjct: 120 YLKSFENDELVLDYLDK----TRHKELKVAYNQVAFARLA 155 >gi|225027046|ref|ZP_03716238.1| hypothetical protein EUBHAL_01302 [Eubacterium hallii DSM 3353] gi|224955510|gb|EEG36719.1| hypothetical protein EUBHAL_01302 [Eubacterium hallii DSM 3353] Length = 162 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 43/169 (25%), Positives = 79/169 (46%), Gaps = 11/169 (6%) Query: 9 SKYEPRIFGD-MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTL 66 S E RI + ++ P+IEE F V + + N L+++ ++ +G + + Sbjct: 2 SGKEVRINMKRTEIVAKTEELVTPIIEENHFELVDVEYVREGANWYLRVYADK-EGGINI 60 Query: 67 RDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 DC +S+A+ LD E+ I Y LEVSSPG+ RP+ ++ DF R G V C++ + Sbjct: 61 DDCVLISRALEEKLDAEDFISDAYILEVSSPGLGRPLKKEKDFKRSLGKSVECKLYKAIN 120 Query: 127 DKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +++ G + +E +E E ++ + + RL + Sbjct: 121 KQKEFEGILKDFTEDTVTIETEG--------NELVLDRKDIAMIRLAID 161 >gi|71276364|ref|ZP_00652641.1| Protein of unknown function DUF150 [Xylella fastidiosa Dixon] gi|71898653|ref|ZP_00680823.1| Protein of unknown function DUF150 [Xylella fastidiosa Ann-1] gi|170729431|ref|YP_001774864.1| hypothetical protein Xfasm12_0201 [Xylella fastidiosa M12] gi|71162826|gb|EAO12551.1| Protein of unknown function DUF150 [Xylella fastidiosa Dixon] gi|71731600|gb|EAO33661.1| Protein of unknown function DUF150 [Xylella fastidiosa Ann-1] gi|167964224|gb|ACA11234.1| conserved hypothetical protein [Xylella fastidiosa M12] Length = 215 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 41/166 (24%), Positives = 84/166 (50%), Gaps = 14/166 (8%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVE-----RDDGNMTLRDC 69 D G+ I +++ P +E + F + + +L+++++ + + +++ DC Sbjct: 17 VSDKGIE--IVNLLAPKVEMLGFDLLGAEYVLVPSGAILRLYIDIPFAMQPECMVSIDDC 74 Query: 70 EELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ 129 E +S+ +S LD+E I G+Y LEVSSPG+DR + F R + H+V + L + Sbjct: 75 ERVSREVSAYLDLEEPISGNYTLEVSSPGLDRRLFTLEQFARHHNHLVKVGLKLQQHGSR 134 Query: 130 KLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +L GKI+ + +N +++A+ F+++ AR++ Sbjct: 135 RLQGKIVRVE------QVGGFVVLLVNGVELAVDFNNIDKARIVPD 174 >gi|331090929|ref|ZP_08339771.1| ribosome maturation factor rimP [Lachnospiraceae bacterium 2_1_46FAA] gi|330405151|gb|EGG84687.1| ribosome maturation factor rimP [Lachnospiraceae bacterium 2_1_46FAA] Length = 155 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 73/155 (47%), Gaps = 9/155 (5%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++ P++EE F V + ++E L+ ++++ G + + DCE +S+A S IL Sbjct: 8 EQKTEELLLPIVEEHGFELVDVEYVKEGGTWYLRAYIDKP-GGIAVDDCEVVSRAFSDIL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D ++ IE Y EVSSPG+ RP+ ++ DF R G V + +++ +G + G + Sbjct: 67 DEKDYIEDTYIFEVSSPGLGRPLKKEKDFARSMGEEVEVRTYRAIDRQKEFVGILKGYDK 126 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +E E E+ + + RL Sbjct: 127 NTVTIEMEDGSERI-------FERNDIALIRLAFD 154 >gi|289578390|ref|YP_003477017.1| hypothetical protein Thit_1191 [Thermoanaerobacter italicus Ab9] gi|297544666|ref|YP_003676968.1| hypothetical protein Tmath_1242 [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528103|gb|ADD02455.1| protein of unknown function DUF150 [Thermoanaerobacter italicus Ab9] gi|296842441|gb|ADH60957.1| protein of unknown function DUF150 [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 151 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 70/136 (51%), Gaps = 2/136 (1%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + ++ P++E+ +F V + + N L++++++ +G +TL DC+ +S+ +S Sbjct: 2 SKIEQIAKDLVTPILEKNNFELVDVEYKKEGNNWYLRVYIDK-EGGITLDDCQLVSEYLS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + IE Y LEVSSPG+DRP+ + DF R G + + ++K G+++ Sbjct: 61 DRLDEVDPIEHSYILEVSSPGLDRPLKKPRDFERNIGKEIEISLYSPIDKRKKFEGELIE 120 Query: 138 TSETGFFLEKEKRGEK 153 + + ++ Sbjct: 121 FTGDKIIILYNGERKE 136 >gi|62263138|gb|AAX78134.1| unknown protein [synthetic construct] Length = 187 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 72/164 (43%), Gaps = 8/164 (4%) Query: 9 SKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRD 68 + + L D+ +++P+ ++ + I ++ L ++IF++ + +++ D Sbjct: 18 DDDDKHMLEVKMLLDDLYEIVEPITADLGYILWGIEVVGSGKLTIRIFIDH-ENGVSVDD 76 Query: 69 CEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 C+ +S+ IS + DVE+ + G Y LEVSSPG++R + G V + G + Sbjct: 77 CQIVSKEISAVFDVEDPVSGKYILEVSSPGMNRQIFNIIQAQALVGFNVKAVTLAPVGSQ 136 Query: 129 QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 K G + L E +I+ FD L R+ Sbjct: 137 TKFKGVLERVEGNNVILNLED-------GKEISFDFDELKKLRV 173 >gi|85860523|ref|YP_462725.1| hypothetical protein SYN_01790 [Syntrophus aciditrophicus SB] gi|123517502|sp|Q2LWU4|RIMP_SYNAS RecName: Full=Ribosome maturation factor rimP gi|85723614|gb|ABC78557.1| hypothetical protein SYN_01790 [Syntrophus aciditrophicus SB] Length = 160 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 6/156 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 L DI + +PVI V++ L K L++I+++R +G +TL DC E+S + Sbjct: 7 KKLREDIWQLAEPVIASEGLELVEVECLRMKTRWLVRIYMDR-EGGVTLDDCSEISNQLG 65 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDV ++ Y LEVSSPG+DRP+VR DF+R+ G V+ + + G+++ Sbjct: 66 DVLDVHDLPPDPYTLEVSSPGLDRPLVRDKDFVRYQGCEVSIRLEQKVDGIRNFRGRLLE 125 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 E K +M I D ++ A L+ Sbjct: 126 YVEEDGR----KILVIEMASKLYRIPRDLIVKANLV 157 >gi|91774421|ref|YP_544177.1| hypothetical protein Mfla_0065 [Methylobacillus flagellatus KT] gi|122399243|sp|Q1GXD8|RIMP_METFK RecName: Full=Ribosome maturation factor rimP gi|91708408|gb|ABE48336.1| protein of unknown function DUF150 [Methylobacillus flagellatus KT] Length = 144 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 35/150 (23%), Positives = 81/150 (54%), Gaps = 11/150 (7%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 D++++++ + ++ + V + L + L+++F+++ + + + DC +S +S +L V Sbjct: 2 QDLNALLERSLGQLGYELVDMELAN-RGKLIRLFIDKPE-GINIDDCVLVSNHLSNLLAV 59 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ I + RLE+SSPG+DR + + SDF+R+ G ++ + ++ +G + G + Sbjct: 60 EHDI-DYDRLEISSPGLDRVLKKTSDFVRFAGERAQVKLRMPIEGRKNFLGILRGVDQEY 118 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARL 172 LE + ++ + F ++ ARL Sbjct: 119 LVLECDG--------VEQRVPFSNIDKARL 140 >gi|71901434|ref|ZP_00683524.1| Protein of unknown function DUF150 [Xylella fastidiosa Ann-1] gi|71728805|gb|EAO30946.1| Protein of unknown function DUF150 [Xylella fastidiosa Ann-1] Length = 216 Score = 112 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 84/166 (50%), Gaps = 14/166 (8%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVE-----RDDGNMTLRDC 69 D G+ I +++ P +E + F + L +L+++++ + + +++ DC Sbjct: 18 VSDKGIE--IVNLLAPKVEMLGFDLLGAEYLLVPSGAILRLYIDIPFAMQPECMVSIDDC 75 Query: 70 EELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ 129 E +S+ +S LD+E I G+Y LEVSSPG+DR + F R + H+V + L + Sbjct: 76 ERVSREVSAYLDLEEPISGNYTLEVSSPGLDRRLFTLEQFARHHNHLVKVGLKLQQHGSR 135 Query: 130 KLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +L GKI+ + +N +++A+ F+++ AR++ Sbjct: 136 RLQGKIVRVE------QVGGFVVLLVNGVELAVDFNNIDKARIVPD 175 >gi|255524232|ref|ZP_05391191.1| protein of unknown function DUF150 [Clostridium carboxidivorans P7] gi|255512057|gb|EET88338.1| protein of unknown function DUF150 [Clostridium carboxidivorans P7] Length = 154 Score = 112 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 88/158 (55%), Gaps = 9/158 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 L +++++++P++ E+++ + L+ K+ L+I++++++ ++L+DCE++S+ Sbjct: 1 MNKKILIDELTNLVKPIVTELNYDLYYLELVREGKDNYLRIYIDKENEGISLQDCEKVSR 60 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S +LDV++ I+ Y LEVSSPGI+R + ++ G+ V I K+K G+ Sbjct: 61 AVSEMLDVKDPIKEGYYLEVSSPGIERILHTDEHLQKYTGNDVVVNISGLLNGKKKYEGQ 120 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ + ++ E +I+I + + + L Sbjct: 121 LVNFNNEELNIKVEDE--------EISIPREKISTVNL 150 >gi|28198120|ref|NP_778434.1| hypothetical protein PD0192 [Xylella fastidiosa Temecula1] gi|28056180|gb|AAO28083.1| conserved hypothetical protein [Xylella fastidiosa Temecula1] Length = 216 Score = 112 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 84/166 (50%), Gaps = 14/166 (8%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVE-----RDDGNMTLRDC 69 D G+ I +++ P +E + F + L +L+++++ + + +++ DC Sbjct: 18 VSDKGIE--IVNLLAPKVEMLGFDLLGAEYLLVPSGAILRLYIDIPFAMQPECMVSIDDC 75 Query: 70 EELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ 129 E +S+ +S LD+E I G+Y LEVSSPG+DR + F R + H+V + L + Sbjct: 76 ERVSREVSAYLDLEEPISGNYTLEVSSPGLDRRLFTLEQFARHHNHLVKVGLKLQQHGSR 135 Query: 130 KLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +L GKI+ + +N +++A+ F+++ AR++ Sbjct: 136 RLQGKIVRVE------QVGGFVVLLVNGVELAVDFNNIDKARIVPD 175 >gi|116492652|ref|YP_804387.1| hypothetical protein PEPE_0886 [Pediococcus pentosaceus ATCC 25745] gi|122265884|sp|Q03FS7|RIMP_PEDPA RecName: Full=Ribosome maturation factor rimP gi|116102802|gb|ABJ67945.1| hypothetical protein PEPE_0886 [Pediococcus pentosaceus ATCC 25745] Length = 158 Score = 112 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 75/160 (46%), Gaps = 8/160 (5%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQA 75 + ++ ++QP+ + +F V++ ++E L++++++ G + + +C +S Sbjct: 1 MSNNVIEKVTELVQPITDRHNFELVEVEFVKEGQGWFLRVYIDKV-GGINIEECAMVSDE 59 Query: 76 ISPILDVENI--IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 +S ILD ++ I Y LEVSSPG +RP+ K D R G + + S ++ G Sbjct: 60 LSEILDAQDPDPIPQAYFLEVSSPGAERPLKTKEDLTRSIGEYIHISLYASINKQKVFEG 119 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + L+ + ++ +++D + ARL Sbjct: 120 YLKSFENDEIVLDYLDK----TRHKELKVTYDQVAFARLA 155 >gi|238020477|ref|ZP_04600903.1| hypothetical protein GCWU000324_00359 [Kingella oralis ATCC 51147] gi|237867457|gb|EEP68463.1| hypothetical protein GCWU000324_00359 [Kingella oralis ATCC 51147] Length = 145 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 74/149 (49%), Gaps = 11/149 (7%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI S++ + + + V L + L++F+++ G +T+ DC +S +S + VE Sbjct: 2 DIQSILDTTLPGLGYELVDHELTAQG--TLRVFIDKA-GGITVDDCAAVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + LE+SSPG+DRP+ + +DF+R+ G + + L ++ IG++ +++ Sbjct: 59 NI--DYKNLEISSPGLDRPLKKAADFIRFAGSQIKLKTRLPVDGQKNFIGRLEAFNDSTQ 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 L + I ++ ARL Sbjct: 117 TLTL------SFDGKTAEIELGNIDKARL 139 >gi|308272454|emb|CBX29058.1| Ribosome maturation factor rimP [uncultured Desulfobacterium sp.] Length = 194 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 72/158 (45%), Gaps = 10/158 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQ 74 L I + E V I E +++++V++ G +TL+DC +S Sbjct: 37 LTREELIAKIKEFADTICESKGIELVHIEYQRETGGRVIRLYVDK-QGGVTLKDCAWVSH 95 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 +S ILD+ + Y LEVSSPG +RP+ + DF R+ G+ ++ ++ G Sbjct: 96 QLSDILDINLDTDWPYSLEVSSPGANRPLGKPEDFKRFKGNTATVRTIVPVEGQKNFKGV 155 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++G ++ L+ + +AIS+ + ARL Sbjct: 156 LLGFNDGFVKLKINDKM--------VAISYKEIAKARL 185 >gi|326565083|gb|EGE15276.1| hypothetical protein E9M_00058 [Moraxella catarrhalis 46P47B1] gi|326567251|gb|EGE17371.1| hypothetical protein E9O_01044 [Moraxella catarrhalis 12P80B1] Length = 165 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 41/172 (23%), Positives = 78/172 (45%), Gaps = 18/172 (10%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGN------MTLRD 68 +++ +I P ++ I + + LL+I++E N +T+ D Sbjct: 1 MKPSSKIAELTELIAPAVDACGVDLWGIEFMPQGRKSLLRIYIESLPENRAAGEHVTIED 60 Query: 69 CEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG-- 126 C ++ +S +LDV + I G Y LEVSSPG DRP+ + + G + ++ + G Sbjct: 61 CSAVNHQVSGVLDVHDPIAGEYVLEVSSPGFDRPLFTREQVAAYVGETINLRLIHAIGSG 120 Query: 127 --DKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 ++K++G++ E + E + + I+FDS+ A L+ D Sbjct: 121 DTKRRKVVGRLTCVGEDSMTVITEDKL-------EFNIAFDSVDKAHLVYED 165 >gi|222055778|ref|YP_002538140.1| protein of unknown function DUF150 [Geobacter sp. FRC-32] gi|254801441|sp|B9M1F7|RIMP_GEOSF RecName: Full=Ribosome maturation factor rimP gi|221565067|gb|ACM21039.1| protein of unknown function DUF150 [Geobacter sp. FRC-32] Length = 159 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 83/165 (50%), Gaps = 14/165 (8%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ + + V+ + V++ E L+L++F+++ +G +TL DCE +S+ Sbjct: 1 MAKVDVVSRVTELAEQVLSSLGMELVELEYKHEGRELVLRLFIDK-EGGVTLDDCESVSR 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS-----GDKQ 129 +S IL+VE+II GHYR EVSSPG+DRP+ + SD+ ++ G +V + ++ Sbjct: 60 DLSQILEVEDIITGHYRFEVSSPGLDRPLKKGSDYEKYAGRLVKIRTFEALADDAGNKRK 119 Query: 130 KLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +G++ G E + + I D + A L Sbjct: 120 TFLGELKGLKEGQVHIALK-------EGQSAVIPLDKIAKANLEF 157 >gi|224825863|ref|ZP_03698967.1| protein of unknown function DUF150 [Lutiella nitroferrum 2002] gi|224602087|gb|EEG08266.1| protein of unknown function DUF150 [Lutiella nitroferrum 2002] Length = 141 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 41/149 (27%), Positives = 76/149 (51%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 D+ +++ + + + V L ++F+++ G +T+ DC +S ++ + VE Sbjct: 2 DVRLLLENTLPGLGYELVDFELTPGGG--FRVFLDKP-GGITVEDCVLVSNHLTRLFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DRP+ ++SDF+R++G + + ++K G++ G + Sbjct: 59 NI--DYERLEVSSPGLDRPLKKESDFVRFSGQRAKIKTRMPIEQQKKFSGRLAGVVDGAV 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 LE E R +AI + ARL Sbjct: 117 QLEFEGR--------TVAIPLAVIDKARL 137 >gi|303229567|ref|ZP_07316355.1| conserved hypothetical protein [Veillonella atypica ACS-134-V-Col7a] gi|303232094|ref|ZP_07318797.1| conserved hypothetical protein [Veillonella atypica ACS-049-V-Sch6] gi|302513200|gb|EFL55239.1| conserved hypothetical protein [Veillonella atypica ACS-049-V-Sch6] gi|302515692|gb|EFL57646.1| conserved hypothetical protein [Veillonella atypica ACS-134-V-Col7a] Length = 152 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 76/157 (48%), Gaps = 9/157 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 + +SSV++ VI + V + + E++ L++++++ G + L DC+ +S+ Sbjct: 1 MKREAVEEFVSSVVEGVIAGTNLELVDVDYVRERDWYLRVYLDKP-GGVDLDDCQMVSEK 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LD ++ I +Y LEVSSPG+DR + + DF+R+NG V ++ ++ G + Sbjct: 60 LSAALDEKDPIAENYLLEVSSPGLDRVLKKDKDFIRYNGRDVDIQLFKPINGSKQYTGVL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G ++T + ++ RL Sbjct: 120 QGFTDTTIEFSINGES--------VTFERSAIAQIRL 148 >gi|304437179|ref|ZP_07397140.1| protein of hypothetical function DUF150 [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369841|gb|EFM23505.1| protein of hypothetical function DUF150 [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 163 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 43/173 (24%), Positives = 84/173 (48%), Gaps = 15/173 (8%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEM-SFRSVQISLLEEKNLLLQIFVER 59 ME+ F+ YE R + + +++ ++ + + V + ++E++ L++++++ Sbjct: 1 MEAHSFIT--YEKRESMSAKIEERVEEMVRGLLTDSPAIELVDVEYVKERDYYLRVYIDK 58 Query: 60 DDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVAC 119 G + + DC+ LS+ + ILD E++I Y LEVSSPG+DR + ++ DF+R +G VV Sbjct: 59 A-GGIDIDDCQRLSERLEEILDREDVIPDAYTLEVSSPGLDRVLRKERDFVREHGRVVDV 117 Query: 120 EIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + K++ G + G L+ I I + RL Sbjct: 118 TLYAPFEGKKQWTGTLAGYDGETLTLDDG-----------IRIPMQQVSQVRL 159 >gi|229552420|ref|ZP_04441145.1| protein of hypothetical function DUF150 [Lactobacillus rhamnosus LMS2-1] gi|229314157|gb|EEN80130.1| protein of hypothetical function DUF150 [Lactobacillus rhamnosus LMS2-1] Length = 167 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 74/158 (46%), Gaps = 8/158 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + ++++++P++++ F + ++ L++++++ G +TL +C +S+A+S Sbjct: 12 QSVVETVTALVKPILDDHHFYLTDVEFVKEGGGWYLRVYIDKP-GGITLDECVLVSEALS 70 Query: 78 PILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + I Y LEVSSPG +RP+ R++D+ + G + + K+ G + Sbjct: 71 EQLDAINPDPIPQQYFLEVSSPGAERPLKRETDYEQAIGDYIHVSLFKKLDGKKVFEGTL 130 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + + K I + SARL Sbjct: 131 KDLKPDQLTLTVKDKSRKFDQ----VIDRKLIASARLA 164 >gi|225849797|ref|YP_002730031.1| hypothetical protein PERMA_0235 [Persephonella marina EX-H1] gi|259586177|sp|C0QTL6|RIMP_PERMH RecName: Full=Ribosome maturation factor rimP gi|225645648|gb|ACO03834.1| conserved hypothetical protein [Persephonella marina EX-H1] Length = 151 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 73/158 (46%), Gaps = 9/158 (5%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAI 76 + + ++QP++EE + V I + E +L+I++ + T+ DCE +S+ I Sbjct: 1 MKQEIIEKVKEMLQPLLEERGLKLVDIEYVTEGKPVLRIYIYNPE-GTTIEDCEWISRRI 59 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 +LD+E++I Y LEVSSPG++R + ++ + G + + K + G + Sbjct: 60 GALLDIEDLIPVSYTLEVSSPGLERKLKNVEEYDIFKGRDIKIVLKEPVDKKNVIKGVLK 119 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G + + + ++ I +++ A L Sbjct: 120 GREDNNIIV--------EEEGEEVRIPLENIARANLEF 149 >gi|253701582|ref|YP_003022771.1| hypothetical protein GM21_2984 [Geobacter sp. M21] gi|259585778|sp|C6E2Q3|RIMP_GEOSM RecName: Full=Ribosome maturation factor rimP gi|251776432|gb|ACT19013.1| protein of unknown function DUF150 [Geobacter sp. M21] Length = 160 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 13/165 (7%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ +I V + V + E +++++F+E+ +G + L DC E+S+ Sbjct: 1 MAKVDVVERVTEIIAEVGAPLGIELVDLEYKREGRDMVVRVFLEKREGGINLDDCAEVSR 60 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS-----GDKQ 129 +S ILDVE+ + Y LEVSSPGI RP+ + D+ R+ GH++ + ++ Sbjct: 61 QLSDILDVEDFMPERYTLEVSSPGICRPLKKVVDYERFMGHLIKVKTFEMLPDEAGNKRK 120 Query: 130 KLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 GK+ G ++ ++ + D + A L Sbjct: 121 TFTGKLTGIADGVIGIDL-------TEGQHARVPLDKVAKAHLEF 158 >gi|300704338|ref|YP_003745941.1| hypothetical protein RCFBP_20140 [Ralstonia solanacearum CFBP2957] gi|299072002|emb|CBJ43332.1| conserved protein of unknown function [Ralstonia solanacearum CFBP2957] Length = 149 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 66/139 (47%), Gaps = 4/139 (2%) Query: 36 MSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVS 95 M + V++ LL++++++ + + + DCE++S ++ + +VEN+ + RLEVS Sbjct: 1 MGYELVEVERAPAG--LLRVYIDQAETGIVIEDCEKVSHQLTRVFEVENV--HYERLEVS 56 Query: 96 SPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDM 155 SPG+DRP+ +DF R+ G V + L ++ G + + E Sbjct: 57 SPGLDRPLRTLTDFTRFAGQEVKVTLRLPVDGQKNFTGIVQAPAGEPGQERIGLEFEGKD 116 Query: 156 NELQIAISFDSLLSARLIV 174 + + L ARL+ Sbjct: 117 GPALLEFTLSELDRARLVP 135 >gi|302878487|ref|YP_003847051.1| hypothetical protein Galf_1259 [Gallionella capsiferriformans ES-2] gi|302581276|gb|ADL55287.1| protein of unknown function DUF150 [Gallionella capsiferriformans ES-2] Length = 141 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 79/152 (51%), Gaps = 13/152 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 D+ +I+ + + + V + LL++F+++ D + + DC+ +S ++ + VE Sbjct: 2 DVVKLIEVTVSGLGYELVDVE--RAGRGLLRVFIDKPD-GIAVEDCQVVSNQLTRLFTVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DR + +++DF+R+ G ++ + ++ IG I ++ Sbjct: 59 NI--DYDRLEVSSPGLDRALKKEADFIRFVGQKAQIKLRMPIAARKNFIGVIGEINDGVL 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 L+ E + +AI ++ ARL+ T Sbjct: 117 QLDVEG--------VPVAIELTNVDKARLVPT 140 >gi|303256974|ref|ZP_07342988.1| DUF150-containing protein [Burkholderiales bacterium 1_1_47] gi|330999162|ref|ZP_08322881.1| hypothetical protein HMPREF9439_00503 [Parasutterella excrementihominis YIT 11859] gi|302860465|gb|EFL83542.1| DUF150-containing protein [Burkholderiales bacterium 1_1_47] gi|329575362|gb|EGG56906.1| hypothetical protein HMPREF9439_00503 [Parasutterella excrementihominis YIT 11859] Length = 186 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 81/184 (44%), Gaps = 32/184 (17%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 M ++ + +I +E + + V + L L+++ +++ DG +TL DCE++S ++ Sbjct: 1 MAVSTQLFEMIDATVEGLGYELVDVEKLPRG--LIRVTIDK-DGGITLDDCEKVSNQLNN 57 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS-------GDKQKL 131 + VEN+ + RLEVSSPG+DRP+ R DF+++ G V E+ +++L Sbjct: 58 AMTVENV--DYDRLEVSSPGVDRPLKRPRDFVKFVGQNVHVELFAPITGEGLPENGRRRL 115 Query: 132 IGKIMGTSETG----FFLEKEK----------------RGEKDMNELQIAISFDSLLSAR 171 G + + + + + D + + F+ + A Sbjct: 116 DGTLDAVEGDENNPSITMTLSENRVARTPAEKQRAAKTKAKSDTPAVTVTFPFNDVERAN 175 Query: 172 LIVT 175 L+ Sbjct: 176 LVPD 179 >gi|294101967|ref|YP_003553825.1| protein of unknown function DUF150 [Aminobacterium colombiense DSM 12261] gi|293616947|gb|ADE57101.1| protein of unknown function DUF150 [Aminobacterium colombiense DSM 12261] Length = 159 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 76/156 (48%), Gaps = 7/156 (4%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 +S+ ++ ++E + + V + +E KNL ++++++ G +T++DCE +S+++S L Sbjct: 8 KEKLSASLRQIVESLGYECVGVVFAQESKNLYVKVYID-VLGGITVKDCETVSRSLSRYL 66 Query: 81 DVEN-IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 D + + Y LEV S G+DRP+ D+ R+ G V +++ G I+ Sbjct: 67 DENDSALPDRYFLEVGSAGLDRPLFSLDDYARFAGKKVKIRCQTLVEGRKRFTGTILSVD 126 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + + ++ ++ I F S+ L+ Sbjct: 127 NATKTVCVQLEE----SDQKVEIPFASIQKGNLVYD 158 >gi|302039406|ref|YP_003799728.1| hypothetical protein NIDE4135 [Candidatus Nitrospira defluvii] gi|300607470|emb|CBK43803.1| conserved protein of unknown function DUF150 [Candidatus Nitrospira defluvii] Length = 159 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 76/154 (49%), Gaps = 6/154 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLL-QIFVERDDGNMTLRDCEELSQAIS 77 L I + P+++ V+ + + + ++F+++ G +TL DCE+ +++S Sbjct: 5 EALNLRIQEIAAPILQSHGLELVEAVCVGQGPRTVIRVFIDKP-GGITLTDCEQAHRSLS 63 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 P LDV + Y LE+SSPG+DRP+ D+ R G V ++ + +L+G ++ Sbjct: 64 PALDVIDPFPHAYTLEISSPGLDRPLRSVQDYRRLIGKPVTLKLREPIQAQWRLVGAVVE 123 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 + G L +++ + I + FD + AR Sbjct: 124 VDDRGVTLGIQQKKTTE----TIRVEFDQIALAR 153 >gi|328957407|ref|YP_004374793.1| hypothetical protein CAR_c10840 [Carnobacterium sp. 17-4] gi|328673731|gb|AEB29777.1| hypothetical protein CAR_c10840 [Carnobacterium sp. 17-4] Length = 154 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 70/154 (45%), Gaps = 8/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + ++ +++P++E F I ++ KN L++++++ + + L DC +S+ IS Sbjct: 1 MVETVTEIVKPIVERNQFELEDIEFIKEGKNWFLRVYIDKPE-GIDLEDCALVSEQISEH 59 Query: 80 LD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +D + I Y LEVSSPG +RP+ ++ D++ G + + ++ G + Sbjct: 60 MDKINPDPIPQAYFLEVSSPGAERPLKKEEDYVNAVGEYIHISLYEPVDGEKVYEGTLKE 119 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 ++ L I S ++ AR Sbjct: 120 VNDETLTLTI----RVKTRVKDIEFSRKTIAKAR 149 >gi|255319714|ref|ZP_05360922.1| conserved hypothetical protein [Acinetobacter radioresistens SK82] gi|262380004|ref|ZP_06073159.1| UPF0090 protein [Acinetobacter radioresistens SH164] gi|255303243|gb|EET82452.1| conserved hypothetical protein [Acinetobacter radioresistens SK82] gi|262298198|gb|EEY86112.1| UPF0090 protein [Acinetobacter radioresistens SH164] Length = 174 Score = 111 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 42/179 (23%), Positives = 73/179 (40%), Gaps = 23/179 (12%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERD-------------- 60 + +I P +E I L K L++IF+++ Sbjct: 1 MKLSNKTQALHDLIAPAVEACDVELWGIEFLPQGKRSLVRIFIDKPVDENAEPVLNEDGE 60 Query: 61 ---DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + ++DC ++Q + ILDV + I G Y LEVSSPG DRP + + G V Sbjct: 61 LEQGRGIGVQDCVRVTQQVGAILDVHDPISGEYSLEVSSPGWDRPFFQLEQMSAYIGQQV 120 Query: 118 ACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 A ++ + +++K K++ ++ E G K + I +++ A LI D Sbjct: 121 ALRLISAVDNRRKFQAKLVSVDLEQEQIQVEVEGSK-----VLEIDSNNIDKANLIYQD 174 >gi|315641144|ref|ZP_07896223.1| protein of hypothetical function DUF150 [Enterococcus italicus DSM 15952] gi|315483152|gb|EFU73669.1| protein of hypothetical function DUF150 [Enterococcus italicus DSM 15952] Length = 154 Score = 111 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 71/156 (45%), Gaps = 8/156 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + ++ ++ P+++ F V++ ++ K+ L++F+++++ + + +C +S+ +S Sbjct: 1 MVQTVTDLVVPILDSKHFELVEVEFVKEGKSWFLRVFIDKEE-GIDIEECAWVSEMLSEK 59 Query: 80 LD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + I Y LE+SSPG +RP+ ++ D+ + G V + + +++ G + Sbjct: 60 LDSIDPDPIPQAYFLEISSPGAERPLKKEKDYEKAVGSFVHLSLYQAVDGEKQYEGILDA 119 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L ++ ARL Sbjct: 120 VEAETLTLTY----RIKTRTKTQTFERKNIAKARLA 151 >gi|39996685|ref|NP_952636.1| hypothetical protein GSU1585 [Geobacter sulfurreducens PCA] gi|81702398|sp|Q74CT6|RIMP_GEOSL RecName: Full=Ribosome maturation factor rimP gi|39983566|gb|AAR34959.1| conserved hypothetical protein [Geobacter sulfurreducens PCA] gi|298505696|gb|ADI84419.1| protein of unknown function DUF150 [Geobacter sulfurreducens KN400] Length = 159 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 14/165 (8%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQ 74 +AG I++V + V+ V++ E ++L++FV++ G ++L DC +S+ Sbjct: 1 MQKDDVAGRITAVAEQVLTPQGLELVEVEYKREGRQMVLRLFVDKP-GGISLDDCAAVSR 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD-----KQ 129 +S ILDVE+ I +Y LEVSSPG++RP+ +++D+ R+ G +V D ++ Sbjct: 60 ELSEILDVEDFIRENYTLEVSSPGLNRPLKKEADYERYAGRLVKVRTFELLADEEGNRRK 119 Query: 130 KLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +G ++G S+ L I D + A L Sbjct: 120 TFLGDLVGLSDGVVTLTL-------REGQLARIPLDKIAKANLEF 157 >gi|150016082|ref|YP_001308336.1| hypothetical protein Cbei_1198 [Clostridium beijerinckii NCIMB 8052] gi|189038629|sp|A6LSQ0|RIMP_CLOB8 RecName: Full=Ribosome maturation factor rimP gi|149902547|gb|ABR33380.1| protein of unknown function DUF150 [Clostridium beijerinckii NCIMB 8052] Length = 152 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 44/158 (27%), Positives = 81/158 (51%), Gaps = 11/158 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQ 74 L I +++P++ E+S + ++E L+I++++ +G ++L DCE +S+ Sbjct: 1 MKKDVLIERIEELVRPIVSELSCELYYVEYVKENGEFYLRIYIDK-EGRVSLNDCEAVSR 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 +S ILDVE+ I+ Y LEVSSPG++R + ++ F ++ G V + S + + G Sbjct: 60 RVSEILDVEDPIKEAYYLEVSSPGLNRGLYKEEHFKKYIGSEVLIRLTSSLNGVKSVKGL 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + SE +E E +I I D + +A L Sbjct: 120 LRDVSEDSILVE---------GETEIQIPRDKIKAANL 148 >gi|225570593|ref|ZP_03779618.1| hypothetical protein CLOHYLEM_06695 [Clostridium hylemonae DSM 15053] gi|225160606|gb|EEG73225.1| hypothetical protein CLOHYLEM_06695 [Clostridium hylemonae DSM 15053] Length = 155 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 73/142 (51%), Gaps = 2/142 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++ P++EE F V + ++E + L+ ++++ G + + DCE++S+ +S IL Sbjct: 8 EQKTEEILLPIVEEYGFELVDVEYVKEGSTWYLRAYIDKP-GGINIDDCEKVSRRLSDIL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D ++ I+ Y +EVSSPG+ RP+ ++ DF R G V +++ G + + Sbjct: 67 DEKDYIDDAYIMEVSSPGLGRPLKKEKDFKRSLGEEVEIRTYRMMDKQKEFFGILKEYDD 126 Query: 141 TGFFLEKEKRGEKDMNELQIAI 162 + + +E K + IA+ Sbjct: 127 STVTIMQEDETLKTFAKSDIAL 148 >gi|182417563|ref|ZP_02948888.1| conserved hypothetical protein [Clostridium butyricum 5521] gi|237668728|ref|ZP_04528712.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378576|gb|EDT76104.1| conserved hypothetical protein [Clostridium butyricum 5521] gi|237657076|gb|EEP54632.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 153 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 80/158 (50%), Gaps = 10/158 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQ 74 L I ++++P+ EE+S++ + ++E L+I++++++G ++L DCE +S+ Sbjct: 1 MNKNMLVEKIENIVRPITEELSYKLYYVEYIKENGDFYLRIYIDKEEGRISLNDCEAVSR 60 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 +S ILDVE+ IEG Y LEVSSPG++R + KS F V + + + G Sbjct: 61 RVSEILDVEDPIEGAYYLEVSSPGLNRSLHTKSHFESVLDKEVMVRFNGTIEGVKNIKGI 120 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + E +E E I I D + SA L Sbjct: 121 LKEVGEDYIIVE---------GEKTIKIPNDKIKSANL 149 >gi|257465969|ref|ZP_05630280.1| putative cytoplasmic protein [Fusobacterium gonidiaformans ATCC 25563] gi|315917125|ref|ZP_07913365.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC 25563] gi|313691000|gb|EFS27835.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC 25563] Length = 153 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 77/162 (47%), Gaps = 11/162 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 + I ++ P EE+ V + +++ ++++VE+ +G++ L DC LS I Sbjct: 2 ESVVQKIEKIVIPAAEELGLSLVDVEYMQDGGYWYVRVYVEKLEGDVNLEDCASLSGKIE 61 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 V+ +I+ + LEVSSPGI+RP+ ++SDF+R+ G + + +K+ + G + Sbjct: 62 D--AVDQLIDKKFFLEVSSPGIERPLKKESDFIRFTGEKIFVALKHKLNEKRNIEGILRA 119 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELL 179 LE + ++ I F + + L+ + Sbjct: 120 YENQTLLLEVDGE--------ELQIPFSEVKKSHLVFDFDEF 153 >gi|259016317|sp|B0U1Q6|RIMP_XYLFM RecName: Full=Ribosome maturation factor rimP Length = 199 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 41/166 (24%), Positives = 84/166 (50%), Gaps = 14/166 (8%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVE-----RDDGNMTLRDC 69 D G+ I +++ P +E + F + + +L+++++ + + +++ DC Sbjct: 1 MSDKGIE--IVNLLAPKVEMLGFDLLGAEYVLVPSGAILRLYIDIPFAMQPECMVSIDDC 58 Query: 70 EELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ 129 E +S+ +S LD+E I G+Y LEVSSPG+DR + F R + H+V + L + Sbjct: 59 ERVSREVSAYLDLEEPISGNYTLEVSSPGLDRRLFTLEQFARHHNHLVKVGLKLQQHGSR 118 Query: 130 KLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +L GKI+ + +N +++A+ F+++ AR++ Sbjct: 119 RLQGKIVRVE------QVGGFVVLLVNGVELAVDFNNIDKARIVPD 158 >gi|121535259|ref|ZP_01667073.1| protein of unknown function DUF150 [Thermosinus carboxydivorans Nor1] gi|121306144|gb|EAX47072.1| protein of unknown function DUF150 [Thermosinus carboxydivorans Nor1] Length = 152 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 71/149 (47%), Gaps = 1/149 (0%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 + + ++Q +I + + V + ++E+N L++F+++ G + + DC+ +S+ Sbjct: 1 MSRQQVEKLVERLVQDIITDTNMELVDVEYVKERNWYLRVFLDKP-GGIEVEDCQWVSEQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 + LD + I+ Y LEVSSPG+DRP+ + DF+R G V + ++G + Sbjct: 60 LEVKLDELDPIKESYYLEVSSPGLDRPLKKDRDFIRHIGEKVEVHTFAPLNGSKLVVGTL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISF 164 G SET L+ + + Sbjct: 120 TGISETDIHLDVNGTALSVPRDKTAQVKL 148 >gi|225016951|ref|ZP_03706143.1| hypothetical protein CLOSTMETH_00866 [Clostridium methylpentosum DSM 5476] gi|224950265|gb|EEG31474.1| hypothetical protein CLOSTMETH_00866 [Clostridium methylpentosum DSM 5476] Length = 177 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 79/166 (47%), Gaps = 12/166 (7%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEEL 72 R+ G ++++++P+++++ + + + L++F+++ DG M + DCE + Sbjct: 20 RMAGKGNTVSAVTALVKPIVDDLGLILWDVVFEKEGASWFLRVFIDK-DGIMEVDDCEAV 78 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+ ++P+LD + IE Y LEVSS G+ R + R F R+ G V ++ + +++ + Sbjct: 79 SKRLNPLLDETDPIEQSYYLEVSSAGLGRRLKRPEHFARFLGDEVTVKLYRAVDKRKEFV 138 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDEL 178 G + + L E + + +L D+L Sbjct: 139 GVLAAFEDNTVVLR--------EGEQEHRFAIGDCAYVKL--NDDL 174 >gi|56707227|ref|YP_169123.1| hypothetical protein FTT_0048 [Francisella tularensis subsp. tularensis SCHU S4] gi|110669697|ref|YP_666254.1| hypothetical protein FTF0048 [Francisella tularensis subsp. tularensis FSC198] gi|115315430|ref|YP_764153.1| hypothetical protein FTH_1748 [Francisella tularensis subsp. holarctica OSU18] gi|169656764|ref|YP_001429349.2| hypothetical protein FTA_1918 [Francisella tularensis subsp. holarctica FTNF002-00] gi|254375032|ref|ZP_04990512.1| conserved hypothetical protein [Francisella novicida GA99-3548] gi|254874066|ref|ZP_05246776.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis MA00-2987] gi|81598096|sp|Q5NIL9|RIMP_FRATT RecName: Full=Ribosome maturation factor rimP gi|122324584|sp|Q0BK68|RIMP_FRATO RecName: Full=Ribosome maturation factor rimP gi|123169692|sp|Q14K22|RIMP_FRAT1 RecName: Full=Ribosome maturation factor rimP gi|189030342|sp|A7NEJ0|RIMP_FRATF RecName: Full=Ribosome maturation factor rimP gi|56603719|emb|CAG44681.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110320030|emb|CAL08064.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC198] gi|115130329|gb|ABI83516.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica OSU18] gi|151572750|gb|EDN38404.1| conserved hypothetical protein [Francisella novicida GA99-3548] gi|164551832|gb|ABU62393.2| conserved hypothetical protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|254840065|gb|EET18501.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis MA00-2987] Length = 152 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 70/154 (45%), Gaps = 8/154 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 L D+ +++P+ ++ + I ++ L ++IF++ + +++ DC+ +S+ IS Sbjct: 2 KMLLDDLYEIVEPITADLGYILWGIEVVGSGKLTIRIFIDH-ENGVSVDDCQIVSKEISA 60 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 + DVE+ + G Y LEVSSPG++R + G V + G + K G + Sbjct: 61 VFDVEDPVSGKYILEVSSPGMNRQIFNIIQAQALVGFNVKAVTLAPVGSQTKFKGVLERV 120 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 L E +I+ FD L R+ Sbjct: 121 EGNNVILNLED-------GKEISFDFDELKKLRV 147 >gi|254876276|ref|ZP_05248986.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842297|gb|EET20711.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 152 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 67/151 (44%), Gaps = 8/151 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 L D+ +++P+ ++ + I ++ L ++IF++ + +++ DC+ +S+ +S Sbjct: 2 KMLLDDLYEIVEPITADLGYILWGIEVVGAGKLTIRIFIDH-ENGVSVDDCQVVSKEVSA 60 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 I DVE+ I Y LEVSSPG++R + G V + + K G + Sbjct: 61 IFDVEDPISDKYVLEVSSPGMNRQIFNIIQAQALVGFNVKAVTLTPVESQTKFKGVLERV 120 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLS 169 L+ + +++ FD L Sbjct: 121 EGNNVILKLDD-------GREVSFDFDELKK 144 >gi|253581489|ref|ZP_04858714.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] gi|251836559|gb|EES65094.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] Length = 159 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 10/163 (6%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAI 76 + I +++ PV+ EM V I L++ ++I+VE +G++TL DC +S + Sbjct: 6 KENILKKIETIVTPVVNEMKLSLVDIEYLQDGGYWYVRIYVENLEGDITLEDCATISNKV 65 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 + + +IE + LEVSSPGI+RP+ + D++R+ G + D + G I+ Sbjct: 66 DEDI--DKLIEQRFFLEVSSPGIERPLKKIDDYIRFKGEKAKLSLKHKVNDNKNFEGIII 123 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELL 179 ++ +LE E E I I F + A L+ E Sbjct: 124 DCRDSIIYLEVEN-------EKIIEIPFSEVRKANLVYEFEEF 159 >gi|332184779|gb|AEE27033.1| clustered with transcription termination protein NusA [Francisella cf. novicida 3523] Length = 150 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 70/152 (46%), Gaps = 8/152 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L D+ +++P+ ++ + I ++ L ++IF++ + +++ DC+ +S+ +S I Sbjct: 2 LLDDLYEIVEPITADLGYILWGIEVVGSGKLTIRIFIDH-ENGVSVDDCQIVSKEVSAIF 60 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I G Y LEVSSPG++R + G V + + K G + Sbjct: 61 DVEDPISGKYILEVSSPGMNRQIFNIIQAQALVGFNVKAVTLSPVESQTKFKGVLERVEG 120 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 L+ E +I+ FD L R+ Sbjct: 121 NNVILKLED-------GKEISFDFDELKKLRV 145 >gi|226940849|ref|YP_002795923.1| hypothetical protein LHK_01930 [Laribacter hongkongensis HLHK9] gi|254800662|sp|C1D8X4|RIMP_LARHH RecName: Full=Ribosome maturation factor rimP gi|226715776|gb|ACO74914.1| Uncharacterized protein conserved in bacteria [Laribacter hongkongensis HLHK9] Length = 141 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 41/149 (27%), Positives = 80/149 (53%), Gaps = 13/149 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 D+ ++++ + + + V L L+++F++ + L DC ++S ++ + VE Sbjct: 2 DVRTLLETTLSGLGYELVDFEL--GHGGLMRVFIDAP-AGIALDDCVKVSNHLTRLFTVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLEVSSPG+DRP+ R++D+ R+ G V + L G+++K G ++G ++ Sbjct: 59 NI--DYDRLEVSSPGLDRPLTREADYARFAGERVRIKTRLPIGERKKFAGTLVGLADGQV 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 L+ + ++AI S+ ARL Sbjct: 117 ELDIDGE--------RVAIPLASIDKARL 137 >gi|89257074|ref|YP_514436.1| hypothetical protein FTL_1811 [Francisella tularensis subsp. holarctica LVS] gi|118498224|ref|YP_899274.1| hypothetical protein FTN_1662 [Francisella tularensis subsp. novicida U112] gi|134301262|ref|YP_001121230.1| hypothetical protein FTW_0124 [Francisella tularensis subsp. tularensis WY96-3418] gi|167009461|ref|ZP_02274392.1| hypothetical protein Ftulh_01737 [Francisella tularensis subsp. holarctica FSC200] gi|194324408|ref|ZP_03058181.1| conserved hypothetical protein [Francisella tularensis subsp. novicida FTE] gi|208780251|ref|ZP_03247593.1| conserved hypothetical protein [Francisella novicida FTG] gi|224456288|ref|ZP_03664761.1| hypothetical protein FtultM_00215 [Francisella tularensis subsp. tularensis MA00-2987] gi|290954350|ref|ZP_06558971.1| hypothetical protein FtulhU_09047 [Francisella tularensis subsp. holarctica URFT1] gi|295312214|ref|ZP_06803014.1| hypothetical protein FtulhU_09034 [Francisella tularensis subsp. holarctica URFT1] gi|122500220|sp|Q2A1G6|RIMP_FRATH RecName: Full=Ribosome maturation factor rimP gi|226696298|sp|A4IW08|RIMP_FRATW RecName: Full=Ribosome maturation factor rimP gi|226736401|sp|A0Q8F5|RIMP_FRATN RecName: Full=Ribosome maturation factor rimP gi|89144905|emb|CAJ80250.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica LVS] gi|118424130|gb|ABK90520.1| conserved protein of unknown function [Francisella novicida U112] gi|134049039|gb|ABO46110.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis WY96-3418] gi|194321473|gb|EDX18958.1| conserved hypothetical protein [Francisella tularensis subsp. novicida FTE] gi|208743900|gb|EDZ90202.1| conserved hypothetical protein [Francisella novicida FTG] gi|282158335|gb|ADA77726.1| hypothetical protein NE061598_00270 [Francisella tularensis subsp. tularensis NE061598] gi|332678960|gb|AEE88089.1| clustered with transcription termination protein NusA [Francisella cf. novicida Fx1] Length = 150 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 70/152 (46%), Gaps = 8/152 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L D+ +++P+ ++ + I ++ L ++IF++ + +++ DC+ +S+ IS + Sbjct: 2 LLDDLYEIVEPITADLGYILWGIEVVGSGKLTIRIFIDH-ENGVSVDDCQIVSKEISAVF 60 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ + G Y LEVSSPG++R + G V + G + K G + Sbjct: 61 DVEDPVSGKYILEVSSPGMNRQIFNIIQAQALVGFNVKAVTLAPVGSQTKFKGVLERVEG 120 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 L E +I+ FD L R+ Sbjct: 121 NNVILNLED-------GKEISFDFDELKKLRV 145 >gi|167627170|ref|YP_001677670.1| hypothetical protein Fphi_0946 [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|241667732|ref|ZP_04755310.1| hypothetical protein FphipA2_03111 [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|226696044|sp|B0TWR1|RIMP_FRAP2 RecName: Full=Ribosome maturation factor rimP gi|167597171|gb|ABZ87169.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 150 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 67/149 (44%), Gaps = 8/149 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L D+ +++P+ ++ + I ++ L ++IF++ + +++ DC+ +S+ +S I Sbjct: 2 LLDDLYEIVEPITADLGYILWGIEVVGAGKLTIRIFIDH-ENGVSVDDCQVVSKEVSAIF 60 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ I Y LEVSSPG++R + G V + + K G + Sbjct: 61 DVEDPISDKYVLEVSSPGMNRQIFNIIQAQALVGFNVKAVTLTPVESQTKFKGVLERVEG 120 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLS 169 L+ + +++ FD L Sbjct: 121 NNVILKLDD-------GREVSFDFDELKK 142 >gi|187931004|ref|YP_001890988.1| protein Lpl2691 [Francisella tularensis subsp. mediasiatica FSC147] gi|226696222|sp|B2SEW5|RIMP_FRATM RecName: Full=Ribosome maturation factor rimP gi|187711913|gb|ACD30210.1| protein Lpl2691 [Francisella tularensis subsp. mediasiatica FSC147] Length = 150 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 70/152 (46%), Gaps = 8/152 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L D+ +++P+ ++ + I ++ L ++IF++ + +++ DC+ +S+ IS + Sbjct: 2 LLDDLYEIVEPITADLGYILWGIEVVGSGKLTIRIFIDH-ENGVSVDDCQIVSKEISAVF 60 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ + G Y LEVSSPG++R + G V + G + K G + Sbjct: 61 DVEDPVSGKYILEVSSPGMNRQIFNIIQAQALVGFNVKAVTLAPVGSQTKFKGVLERVEG 120 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 L E +I+ FD L R+ Sbjct: 121 NSVILNLED-------GKEISFDFDELKKLRV 145 >gi|253997781|ref|YP_003049844.1| hypothetical protein Msip34_0068 [Methylovorus sp. SIP3-4] gi|313199845|ref|YP_004038503.1| hypothetical protein MPQ_0074 [Methylovorus sp. MP688] gi|253984460|gb|ACT49317.1| protein of unknown function DUF150 [Methylovorus sp. SIP3-4] gi|312439161|gb|ADQ83267.1| conserved hypothetical protein [Methylovorus sp. MP688] Length = 145 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 79/152 (51%), Gaps = 11/152 (7%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 D+ S+++ + ++ + V + + + L+++F+++ + + + DC +S + +L V Sbjct: 2 QDLYSLLEKSVSQLGYELVDVEISN-RGKLIRLFIDKPE-GINIDDCVLVSNQLGNVLAV 59 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 EN I + RLEVSSPG+DR + + +DF+R+ G ++ + +++ IG + G + Sbjct: 60 ENDI-DYDRLEVSSPGLDRVLKKDADFIRFTGERAQVKLRIPVDNRKNFIGILQGIEQDN 118 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E+E ++ ++ ARL Sbjct: 119 LLIEQEGVLH--------RLALSNIDKARLAP 142 >gi|294788743|ref|ZP_06753984.1| 15 kDa protein [Simonsiella muelleri ATCC 29453] gi|294483225|gb|EFG30911.1| 15 kDa protein [Simonsiella muelleri ATCC 29453] Length = 145 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 75/149 (50%), Gaps = 11/149 (7%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI +++ + + + V L + L++F++ +G +T+ DC +S +S + VE Sbjct: 2 DIQTILDTTLPGLGYELVDFELTAQG--TLRVFIDT-EGGITVEDCANVSNHLSRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 N+ + LE+SSPG+DRP+ + SDF+R++G +V + L ++ IGKI E Sbjct: 59 NV--DYKNLEISSPGLDRPLKKASDFVRFSGSLVKIKTRLPIDGQKNFIGKIDAFDENTQ 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + I ++ AR+ Sbjct: 117 IITL------AFDGKAVQIELSNVDKARI 139 >gi|315648099|ref|ZP_07901200.1| hypothetical protein PVOR_22524 [Paenibacillus vortex V453] gi|315276745|gb|EFU40088.1| hypothetical protein PVOR_22524 [Paenibacillus vortex V453] Length = 153 Score = 110 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 10/159 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++QP + E F V + ++ N L++FV DG + + DC +S+ Sbjct: 1 MSTSKIKTTVEEMVQPYLNEHGFELVDVEYVKEGSNWFLRVFV-DKDGGIDIDDCGLISE 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 +S LD + I Y LEVSSPG +RP+ +K D + G V + ++ GK Sbjct: 60 YLSQKLDENDPIPTAYFLEVSSPGAERPLKKKEDVAKSVGKNVFVTVYEPINGLKEFEGK 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + ++ + Q I + + SARL Sbjct: 120 LESFDNEELVIQ--------TVKKQYVIPYAKVASARLA 150 >gi|317133696|ref|YP_004093010.1| protein of unknown function DUF150 [Ethanoligenens harbinense YUAN-3] gi|315471675|gb|ADU28279.1| protein of unknown function DUF150 [Ethanoligenens harbinense YUAN-3] Length = 165 Score = 110 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 67/137 (48%), Gaps = 3/137 (2%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELS 73 + + + ++ PV E + I ++ + L+I++++ DG + + DCE S Sbjct: 1 MAAGKSVVSRVEALALPVAETLGLSIWDIEYVKEGASWFLRIYIDK-DGGVGIEDCEAFS 59 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS-GDKQKLI 132 +AI LD ++I Y LEVSSPGI+R + R + F + G V ++ ++++ Sbjct: 60 RAIDGPLDEADLIPQQYYLEVSSPGIERELKRDAHFQAFIGKKVHVRLIRPLEDGRREVN 119 Query: 133 GKIMGTSETGFFLEKEK 149 G + ++ LE + Sbjct: 120 GTLTAFADGTLTLETPE 136 >gi|182680748|ref|YP_001828908.1| hypothetical protein XfasM23_0177 [Xylella fastidiosa M23] gi|226695961|sp|B2I724|RIMP_XYLF2 RecName: Full=Ribosome maturation factor rimP gi|259016318|sp|Q87EV6|RIMP_XYLFT RecName: Full=Ribosome maturation factor rimP gi|182630858|gb|ACB91634.1| protein of unknown function DUF150 [Xylella fastidiosa M23] Length = 199 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 84/166 (50%), Gaps = 14/166 (8%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVE-----RDDGNMTLRDC 69 D G+ I +++ P +E + F + L +L+++++ + + +++ DC Sbjct: 1 MSDKGIE--IVNLLAPKVEMLGFDLLGAEYLLVPSGAILRLYIDIPFAMQPECMVSIDDC 58 Query: 70 EELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ 129 E +S+ +S LD+E I G+Y LEVSSPG+DR + F R + H+V + L + Sbjct: 59 ERVSREVSAYLDLEEPISGNYTLEVSSPGLDRRLFTLEQFARHHNHLVKVGLKLQQHGSR 118 Query: 130 KLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +L GKI+ + +N +++A+ F+++ AR++ Sbjct: 119 RLQGKIVRVE------QVGGFVVLLVNGVELAVDFNNIDKARIVPD 158 >gi|167037625|ref|YP_001665203.1| hypothetical protein Teth39_1213 [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|307264911|ref|ZP_07546473.1| protein of unknown function DUF150 [Thermoanaerobacter wiegelii Rt8.B1] gi|320116040|ref|YP_004186199.1| hypothetical protein Thebr_1242 [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|326389439|ref|ZP_08211006.1| protein of unknown function DUF150 [Thermoanaerobacter ethanolicus JW 200] gi|226696278|sp|B0K9Q4|RIMP_THEP3 RecName: Full=Ribosome maturation factor rimP gi|166856459|gb|ABY94867.1| protein of unknown function DUF150 [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|306920169|gb|EFN50381.1| protein of unknown function DUF150 [Thermoanaerobacter wiegelii Rt8.B1] gi|319929131|gb|ADV79816.1| protein of unknown function DUF150 [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|325994444|gb|EGD52869.1| protein of unknown function DUF150 [Thermoanaerobacter ethanolicus JW 200] Length = 151 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 70/136 (51%), Gaps = 2/136 (1%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + ++ PV+E+ +F V + + + L++++++ +G +TL DC+ +S+ +S Sbjct: 2 SKIEQIAKDLVMPVLEKNNFELVDVEYKKEGSHWYLRVYIDK-EGGITLDDCQLVSEYLS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + IE Y LEVSSPG+DRP+ + DF R G + + ++K G+++ Sbjct: 61 DRLDEVDPIEHSYILEVSSPGLDRPLKKPRDFERNIGKEIEISLYAPIDKRKKFEGELIE 120 Query: 138 TSETGFFLEKEKRGEK 153 + + ++ Sbjct: 121 FTGDKIIILYNGERKE 136 >gi|118579396|ref|YP_900646.1| hypothetical protein Ppro_0960 [Pelobacter propionicus DSM 2379] gi|259586175|sp|A1AML8|RIMP_PELPD RecName: Full=Ribosome maturation factor rimP gi|118502106|gb|ABK98588.1| protein of unknown function DUF150 [Pelobacter propionicus DSM 2379] Length = 161 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 83/161 (51%), Gaps = 14/161 (8%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + I ++ PVI+ M+ V++ + +L++F+++ +G +TL DC +LS+ +S Sbjct: 7 DICDRIRTLALPVIDSMNLELVEVEYKRSGREAVLRLFIDK-EGGVTLDDCADLSRELST 65 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD-----KQKLIG 133 +LDVE++I Y LEVSSPG+DRP+ ++D+ R++G ++ D ++ +G Sbjct: 66 LLDVEDLIPCEYSLEVSSPGLDRPLKSEADYERFSGRLIKVRTYEPYQDDAGNRRKTFLG 125 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ G + + +I + + A+L Sbjct: 126 RLEGLKDGSVVMSL-------TEGQTASIPLERIAKAQLEF 159 >gi|261407940|ref|YP_003244181.1| hypothetical protein GYMC10_4147 [Paenibacillus sp. Y412MC10] gi|329929353|ref|ZP_08283106.1| hypothetical protein HMPREF9412_5355 [Paenibacillus sp. HGF5] gi|261284403|gb|ACX66374.1| protein of unknown function DUF150 [Paenibacillus sp. Y412MC10] gi|328936722|gb|EGG33165.1| hypothetical protein HMPREF9412_5355 [Paenibacillus sp. HGF5] Length = 153 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 10/159 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++QP ++E F V + ++ N L++FV DG + + DC +S+ Sbjct: 1 MSTSKIKTTVEEMVQPYLDEHGFELVDVEYVKEGSNWFLRVFV-DKDGGIDIDDCGLISE 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 +S LD + I Y LEVSSPG +RP+ +K D + G V + ++ GK Sbjct: 60 HLSQKLDENDPIPTAYFLEVSSPGAERPLKKKEDVAKSVGKNVFVTVYEPINGLKEFEGK 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + ++ K+ I + + SARL Sbjct: 120 LESFDNEELVIQTAKKQHV--------IPYAKVASARLA 150 >gi|77359941|ref|YP_339516.1| hypothetical protein PSHAa0995 [Pseudoalteromonas haloplanktis TAC125] gi|76874852|emb|CAI86073.1| conserved protein of unknown function (yhbC) [Pseudoalteromonas haloplanktis TAC125] Length = 141 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 68/147 (46%), Gaps = 10/147 (6%) Query: 28 VIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 ++ P +E + F + + ++ L++++ + +++ +C + S+ IS ILDVE+ I Sbjct: 1 MLTPAVEMLGFELHGLEFVQAGRHSTLRVYITH-EAGISVDNCADASRQISAILDVEDPI 59 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE 146 Y LEVSSPG+DR + ++ + + G V L ++ G ++ + L Sbjct: 60 TNEYDLEVSSPGVDRLLFKQDHYEQAQGEEVQLRTKLPQDGRRNFKGDLIAVTSDMITLS 119 Query: 147 KEKRGEKDMNELQIAISFDSLLSARLI 173 + + I ++ A +I Sbjct: 120 SDG--------TEHLIMLSNIERANII 138 >gi|51246467|ref|YP_066351.1| hypothetical protein DP2615 [Desulfotalea psychrophila LSv54] gi|81641363|sp|Q6AJY2|RIMP_DESPS RecName: Full=Ribosome maturation factor rimP gi|50877504|emb|CAG37344.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54] Length = 151 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 71/159 (44%), Gaps = 9/159 (5%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQA 75 I + V++ M V I E +L++F++ +G +TL C ++S+ Sbjct: 1 MSEAAVEKIEGYVASVLQSMDVELVDIQFRCEGHGWVLRLFID-VEGGVTLDLCAQVSRE 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 + LDVE++IE Y LEVSSPG++RP+ ++F R+ G ++ ++ G I Sbjct: 60 VGQYLDVEDVIEQAYHLEVSSPGVERPLKSLANFERFAGKKARIKLHEPLNGEKTFEGII 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + L + + + L ARL++ Sbjct: 120 GPVEDGEVSLLVDGKIAVKCG-------IEQLNKARLVL 151 >gi|317471573|ref|ZP_07930919.1| hypothetical protein HMPREF1011_01267 [Anaerostipes sp. 3_2_56FAA] gi|316900952|gb|EFV22920.1| hypothetical protein HMPREF1011_01267 [Anaerostipes sp. 3_2_56FAA] Length = 154 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 40/162 (24%), Positives = 79/162 (48%), Gaps = 10/162 (6%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELS 73 + G + ++ P+I+E F V + ++ N L+I+ ++ +G +++ DC +S Sbjct: 1 MAGKAEIEQKTEELVTPIIDENHFELVDVEYVKEGANWYLRIYADK-EGGISIDDCVLIS 59 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 +A+ LD ++ I+ Y LEVSSPG+ RP+ ++ DF R G V ++ + +++ G Sbjct: 60 RALEAKLDADDFIKDAYILEVSSPGLGRPLKKEKDFQRSIGQSVDIKLYKAIDKQKEFTG 119 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + S+ L + + S+ SARL + Sbjct: 120 ILKEYSKERIILSIDGTDQ--------EFETKSVASARLSLD 153 >gi|300691723|ref|YP_003752718.1| hypothetical protein RPSI07_2078 [Ralstonia solanacearum PSI07] gi|299078783|emb|CBJ51443.1| conserved protein of unknown function [Ralstonia solanacearum PSI07] Length = 149 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 65/139 (46%), Gaps = 4/139 (2%) Query: 36 MSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVS 95 M + V++ LL++++++ + + + DCE++S ++ + +VEN+ + RLEVS Sbjct: 1 MGYELVEVERAPAG--LLRVYIDQAETGIVIEDCEKVSHQLTRVFEVENV--NYERLEVS 56 Query: 96 SPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDM 155 SPG+DRP+ +DF R+ G + L ++ G + + E Sbjct: 57 SPGLDRPLRTLTDFTRFAGQEAKVTLRLPVNGQKNFTGIVQAPAGEPGQERIGLEFEGKD 116 Query: 156 NELQIAISFDSLLSARLIV 174 + + L ARL+ Sbjct: 117 GPALLEFTLSELDRARLVP 135 >gi|259046784|ref|ZP_05737185.1| BCR/YhbC family protein [Granulicatella adiacens ATCC 49175] gi|259036552|gb|EEW37807.1| BCR/YhbC family protein [Granulicatella adiacens ATCC 49175] Length = 167 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 70/160 (43%), Gaps = 8/160 (5%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQA 75 + ++ + + VI++ F + ++ KN L+ ++++ G + L DC +S+ Sbjct: 10 AMSKVTETVTELTRDVIQKEGFELFDLEFVKEGKNWFLRFYLDKP-GGIDLDDCAFMSEK 68 Query: 76 ISPILDVE--NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 S ILD + + I Y LEVSSPG +RP+ + + G V + ++ L G Sbjct: 69 FSEILDAQNPDPIPQAYFLEVSSPGAERPLRNEEELKAAIGSYVHLSFYQNIEGEKFLEG 128 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 ++ E L + + + I ++ ARL Sbjct: 129 TLLSVDEETVTLNVQIK----TRTKEFTIERKNIAKARLA 164 >gi|256750787|ref|ZP_05491672.1| protein of unknown function DUF150 [Thermoanaerobacter ethanolicus CCSD1] gi|256750370|gb|EEU63389.1| protein of unknown function DUF150 [Thermoanaerobacter ethanolicus CCSD1] Length = 151 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 70/136 (51%), Gaps = 2/136 (1%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + ++ P++E+ +F V + + + L++++++ +G +TL DC+ +S+ +S Sbjct: 2 SKIEQIAKDLVMPILEKNNFELVDVEYKKEGSHWYLRVYIDK-EGGITLDDCQLVSEYLS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + IE Y LEVSSPG+DRP+ + DF R G + + ++K G+++ Sbjct: 61 DRLDEVDPIEHSYILEVSSPGLDRPLKKPRDFERNIGKEIEISLYSPIDKRKKFEGELIE 120 Query: 138 TSETGFFLEKEKRGEK 153 + + ++ Sbjct: 121 FTGDKIIILYNGERKE 136 >gi|304316866|ref|YP_003852011.1| hypothetical protein Tthe_1413 [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778368|gb|ADL68927.1| protein of unknown function DUF150 [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 151 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 74/154 (48%), Gaps = 10/154 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + +++ P IE+ +F V + + N L++++++ +G ++L DC+ +S+ +S Sbjct: 2 SRIEELTRNLVAPAIEKNNFELVDVEYKKEGNNWYLRVYIDK-EGGVSLDDCQIISEYLS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + IE Y LEVSSPGIDRP+ + DF ++ G +V + K+K G+++G Sbjct: 61 EKLDEVDPIENSYILEVSSPGIDRPLKTQRDFDKFKGSLVEVSLYQPIDKKKKYEGELVG 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 + + + + + Sbjct: 121 LINDKVVITDNGERK--------EFDINDISLVK 146 >gi|94971245|ref|YP_593293.1| hypothetical protein Acid345_4219 [Candidatus Koribacter versatilis Ellin345] gi|259585655|sp|Q1IIT1|RIMP_ACIBL RecName: Full=Ribosome maturation factor rimP gi|94553295|gb|ABF43219.1| protein of unknown function DUF150 [Candidatus Koribacter versatilis Ellin345] Length = 169 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 77/164 (46%), Gaps = 13/164 (7%) Query: 23 GDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++ V + V++ K +L+I +++ + +T DC +S +S ILD Sbjct: 5 EKVREIVERVARDYGLEVVEVEFRGGGKARMLRITIDKPE-GVTHDDCSHVSNEVSTILD 63 Query: 82 VENIIEG-HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 VE+++ G Y LEVSSPG+DR + + +DF R+ G +V + G++ ++ Sbjct: 64 VEDVVPGASYTLEVSSPGLDRKISKPADFERFTGSLVKVSTREPLDGNRHFEGRLESFAD 123 Query: 141 TGFFLEK----------EKRGEKDMNELQIAISFDSLLSARLIV 174 ++ +K + + E ++ I+ + A L+ Sbjct: 124 GKLTIDLNAVPQRGQKKQKGPKAPVVERKVEIALADVEKANLVP 167 >gi|317153846|ref|YP_004121894.1| hypothetical protein Daes_2142 [Desulfovibrio aespoeensis Aspo-2] gi|316944097|gb|ADU63148.1| protein of unknown function DUF150 [Desulfovibrio aespoeensis Aspo-2] Length = 156 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 74/158 (46%), Gaps = 6/158 (3%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 ++ +I+P +E + ++ + + +++I+++ D +T+ C ++S+ Sbjct: 1 MRPTFEDTLADIIRPEVEGLGCTLWGLASPSKGERRIIRIYIDGPD-GVTIDQCAKVSRQ 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +L+VE+ I G Y LEVSSPG+DR + + G V + + ++K+ G + Sbjct: 60 VSLLLEVEDTIPGAYILEVSSPGLDRRFFSTAQMADFVGKQVTALLYEARDGRRKVTGVL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 ++ D + ++++ L RL+ Sbjct: 120 KSIGADAG----QESFTLDEGGQDVTLAWNDLKEVRLV 153 >gi|227510251|ref|ZP_03940300.1| protein of hypothetical function DUF150 [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227513180|ref|ZP_03943229.1| protein of hypothetical function DUF150 [Lactobacillus buchneri ATCC 11577] gi|227524395|ref|ZP_03954444.1| protein of hypothetical function DUF150 [Lactobacillus hilgardii ATCC 8290] gi|227083561|gb|EEI18873.1| protein of hypothetical function DUF150 [Lactobacillus buchneri ATCC 11577] gi|227088626|gb|EEI23938.1| protein of hypothetical function DUF150 [Lactobacillus hilgardii ATCC 8290] gi|227189903|gb|EEI69970.1| protein of hypothetical function DUF150 [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 157 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 76/158 (48%), Gaps = 8/158 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + + V++P++++ +F + ++E K+ L++++++ G +T+ DC +S +S Sbjct: 2 SNVVETVKQVVKPILDKHTFYLFDVEFVKENKSWYLRVYIDKK-GGITIDDCVLVSDELS 60 Query: 78 PILDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + I Y LEVSSPG +RP+ + + G + + + ++ G + Sbjct: 61 EKLDEMDPDPIPQQYFLEVSSPGAERPLRNDEELQQAVGEYIHISLYQNLNGQKAFEGFL 120 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + L+ +K G+ D I I + + +RL Sbjct: 121 RSVTSDELVLQNDKWGKND----TINIPRNLIAKSRLA 154 >gi|168180699|ref|ZP_02615363.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916] gi|182668569|gb|EDT80548.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916] Length = 153 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 76/158 (48%), Gaps = 10/158 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 L ++ I+P+ E + + I ++ K L+I+++ + ++L CE++S+ Sbjct: 1 MSKHSLIENLKEQIEPIAEGLDYELYHIEFVKEGKENYLRIYIDS-ENGVSLEGCEKVSR 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 AIS +LD + I+ Y LEVSSPGIDR + ++ G+ + + K+K G+ Sbjct: 60 AISELLDDIDPIQESYYLEVSSPGIDRVLYTDKHLEKYKGYNIVLNLYSPIDKKKKYEGE 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ +E ++ E E + I + + A L Sbjct: 120 LVDFNENEIDIKVE--------ENIVTIPREKISKATL 149 >gi|167772659|ref|ZP_02444712.1| hypothetical protein ANACOL_04040 [Anaerotruncus colihominis DSM 17241] gi|167665137|gb|EDS09267.1| hypothetical protein ANACOL_04040 [Anaerotruncus colihominis DSM 17241] Length = 159 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 63/138 (45%), Gaps = 2/138 (1%) Query: 26 SSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ PV + M ++ + L+ +++R +G +T+ +CE S+ +S +LD + Sbjct: 16 EALAAPVAQRMGLYLWDVAFEKEGAGWYLRYYIDR-EGGVTIDECEAFSREVSDLLDEAD 74 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 I+ Y LEV SPG++R + + F ++ G V ++ ++ +G + Sbjct: 75 PIDQSYTLEVGSPGVERKLTKDWHFQKYIGAQVHVRLIRPVEGERDFVGALSSYENGVVA 134 Query: 145 LEKEKRGEKDMNELQIAI 162 + + E + + A Sbjct: 135 VLLDDELEMTFSPGETAF 152 >gi|260550520|ref|ZP_05824730.1| UPF0090 protein [Acinetobacter sp. RUH2624] gi|260406435|gb|EEW99917.1| UPF0090 protein [Acinetobacter sp. RUH2624] Length = 174 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 40/179 (22%), Positives = 74/179 (41%), Gaps = 23/179 (12%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERD-------------- 60 + + +I P ++ I L K LL+I+++R Sbjct: 1 MKLSNKSQALYDMIAPAVQACGVDLWGIEFLPQGKRSLLRIYIDRPVDENAEPVINEDGE 60 Query: 61 ---DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + ++DC ++Q + +LDV + I G Y LEVSSPG DRP + + G V Sbjct: 61 VEQGRGIGVQDCVRVTQQVGAMLDVHDPISGEYSLEVSSPGWDRPFFQLEQLQSYIGQQV 120 Query: 118 ACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 A ++ + +++K K++ ++ E G+ + I +++ A LI D Sbjct: 121 ALRLIAAVENRRKFQAKLLAVDLENEEIKVEVEGK-----HVLDIDSNNIDKANLIYQD 174 >gi|162454077|ref|YP_001616444.1| hypothetical protein sce5801 [Sorangium cellulosum 'So ce 56'] gi|259586198|sp|A9G896|RIMP_SORC5 RecName: Full=Ribosome maturation factor rimP gi|161164659|emb|CAN95964.1| hypothetical protein sce5801 [Sorangium cellulosum 'So ce 56'] Length = 208 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 20/177 (11%) Query: 24 DISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDG-----NMTLRDCEELSQAIS 77 + + PV+ V + + E L++ +ER++ +TL DC ++S+ +S Sbjct: 13 RVRDAVAPVLASHGVTLVDLEWITERAGWTLRLTIERENADDAGGGVTLEDCADVSRDVS 72 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS-SGDKQKLIGKIM 136 +LDVE++I HY LEVSSPG+DR + ++F R+ G ++ ++ L G+++ Sbjct: 73 SVLDVEDLIPNHYNLEVSSPGLDRRLRTAAEFARFLGRTAKVKLARPAPDGQRLLRGELL 132 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRA---SLNNYGSYA 190 E + + + +IA+ F + ARL+ EL A Sbjct: 133 EAPEGQVAVLVDGK--------RIAVPFADVAEARLVF--ELTAQPKKGQRQGKEPA 179 >gi|239907794|ref|YP_002954535.1| hypothetical protein DMR_31580 [Desulfovibrio magneticus RS-1] gi|239797660|dbj|BAH76649.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 189 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 67/168 (39%), Gaps = 13/168 (7%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVE--------RDDGNMT 65 + +A + +I P + + L L++++++ + +T Sbjct: 1 MLQKNAVADAVRDLIAPYAATLGLAVWGVELASAGHRQLVRLYLDLAADTPRTPERLGVT 60 Query: 66 LRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS 125 + +C +S+ + +L+V+ I Y LEVSSPG+ R L + G + ++ + Sbjct: 61 IDECARVSRHLGALLEVDEIFHNPYVLEVSSPGLSRRFFEAGQLLAYVGREIEAKLAVPR 120 Query: 126 GDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 +++ G + G S+ + + E I+ F RLI Sbjct: 121 EGRKRFKGILSGVSDQTVSMTVD----PGAKEFSISFDFAEADKIRLI 164 >gi|167040286|ref|YP_001663271.1| hypothetical protein Teth514_1649 [Thermoanaerobacter sp. X514] gi|300914370|ref|ZP_07131686.1| protein of unknown function DUF150 [Thermoanaerobacter sp. X561] gi|307724394|ref|YP_003904145.1| hypothetical protein Thet_1251 [Thermoanaerobacter sp. X513] gi|226736395|sp|B0K1E0|RIMP_THEPX RecName: Full=Ribosome maturation factor rimP gi|166854526|gb|ABY92935.1| protein of unknown function DUF150 [Thermoanaerobacter sp. X514] gi|300889305|gb|EFK84451.1| protein of unknown function DUF150 [Thermoanaerobacter sp. X561] gi|307581455|gb|ADN54854.1| protein of unknown function DUF150 [Thermoanaerobacter sp. X513] Length = 151 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 70/136 (51%), Gaps = 2/136 (1%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + ++ P++E+ +F V + + + L++++++ +G +TL DC+ +S+ +S Sbjct: 2 SKIEQIAKDLVMPILEKNNFELVDVEYKKEGSHWYLRVYIDK-EGGITLDDCQLVSEYLS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + IE Y LEVSSPG+DRP+ + DF R G + + ++K G+++ Sbjct: 61 DRLDEVDPIEHSYILEVSSPGLDRPLKKPRDFERNIGKEIEISLYTPIDKRKKFEGELIE 120 Query: 138 TSETGFFLEKEKRGEK 153 + + ++ Sbjct: 121 FTGDKIIILYNGERKE 136 >gi|85710532|ref|ZP_01041596.1| hypothetical protein NAP1_08982 [Erythrobacter sp. NAP1] gi|85687710|gb|EAQ27715.1| hypothetical protein NAP1_08982 [Erythrobacter sp. NAP1] Length = 188 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 50/170 (29%), Positives = 82/170 (48%), Gaps = 17/170 (10%) Query: 23 GDISSVIQPVIEEMSFRSVQISLL----EEKNLLLQIFVERDDGN-MTLRDCEELSQAIS 77 ++ +I+P E + F V++ ++ + LQI E + + C ELS+ +S Sbjct: 5 ARLTDLIEPEAEALGFELVRVKMMPSEAGDGGEALQIMAEDPATGQLVIEQCAELSRRVS 64 Query: 78 PILDV-----ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 ++D E +IEG Y LEVSSPGIDRP+ R+ DF W GH + ++ Sbjct: 65 DMIDAREEAGEVLIEGAYHLEVSSPGIDRPLTREKDFANWAGHEARIVMTKGFDGQRVYK 124 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS 182 G++ G + K GE + D + SA+L +TD+L+ A+ Sbjct: 125 GELGGVENGMVTITDAKAGEAK-------LPQDQIHSAKLELTDKLIAAT 167 >gi|262377016|ref|ZP_06070242.1| UPF0090 protein [Acinetobacter lwoffii SH145] gi|262308054|gb|EEY89191.1| UPF0090 protein [Acinetobacter lwoffii SH145] Length = 174 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 23/179 (12%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERD-------------- 60 + +I P +E + I L + LL+I++++ Sbjct: 1 MKLSNKTQALQDLIAPAVEACNVNLWGIEFLPQGKCSLLRIYIDKPVDESVAPAINEDGE 60 Query: 61 ---DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + ++DC ++Q + +LDV + I G Y LEVSSPG DRP + + GH V Sbjct: 61 EEQGRGIGVQDCVRVTQQVGAMLDVHDPISGEYSLEVSSPGWDRPFFQLEQMSGYIGHTV 120 Query: 118 ACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 A ++ + +++K K++ ++ E + + I ++ A L+ D Sbjct: 121 ALRLISAVDNRRKFQAKLVAVDLENEMIQVEVEKQ-----QVLEIDSHNIDKANLVFQD 174 >gi|225572727|ref|ZP_03781482.1| hypothetical protein RUMHYD_00916 [Blautia hydrogenotrophica DSM 10507] gi|225039900|gb|EEG50146.1| hypothetical protein RUMHYD_00916 [Blautia hydrogenotrophica DSM 10507] Length = 155 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 75/142 (52%), Gaps = 2/142 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 +I P++E F V + ++E N L++++++ +G +T+ DCE +S+A S +L Sbjct: 8 EQRAEEMILPLVEAQRFELVDVEYVKEAGNWYLRVYIDK-EGGITVDDCELISRAFSDLL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D + IE Y LEVSSPG+ RP+ ++ D+ R G + +++ G ++ Sbjct: 67 DEADFIEDSYILEVSSPGLGRPLKKEKDYARSMGKELEIRTYRPIDKQKEFYGILLAYDN 126 Query: 141 TGFFLEKEKRGEKDMNELQIAI 162 +E++ + + + +IA+ Sbjct: 127 NSVTIEEQDKTRRTFEKKEIAL 148 >gi|169797409|ref|YP_001715202.1| hypothetical protein ABAYE3440 [Acinetobacter baumannii AYE] gi|184156668|ref|YP_001845007.1| hypothetical protein ACICU_00348 [Acinetobacter baumannii ACICU] gi|213155777|ref|YP_002317822.1| hypothetical protein AB57_0413 [Acinetobacter baumannii AB0057] gi|215484848|ref|YP_002327085.1| hypothetical protein ABBFA_003201 [Acinetobacter baumannii AB307-0294] gi|239500932|ref|ZP_04660242.1| hypothetical protein AbauAB_01325 [Acinetobacter baumannii AB900] gi|260556301|ref|ZP_05828520.1| UPF0090 protein [Acinetobacter baumannii ATCC 19606] gi|301346316|ref|ZP_07227057.1| hypothetical protein AbauAB0_08725 [Acinetobacter baumannii AB056] gi|301513269|ref|ZP_07238506.1| hypothetical protein AbauAB05_16841 [Acinetobacter baumannii AB058] gi|301596449|ref|ZP_07241457.1| hypothetical protein AbauAB059_11562 [Acinetobacter baumannii AB059] gi|332855374|ref|ZP_08435839.1| hypothetical protein HMPREF0021_03428 [Acinetobacter baumannii 6013150] gi|332867630|ref|ZP_08437762.1| hypothetical protein HMPREF0020_01378 [Acinetobacter baumannii 6013113] gi|332873076|ref|ZP_08441033.1| hypothetical protein HMPREF0022_00636 [Acinetobacter baumannii 6014059] gi|226703746|sp|B7H117|RIMP_ACIB3 RecName: Full=Ribosome maturation factor rimP gi|226703825|sp|B0VE83|RIMP_ACIBY RecName: Full=Ribosome maturation factor rimP gi|226703842|sp|B2I2M5|RIMP_ACIBC RecName: Full=Ribosome maturation factor rimP gi|226703866|sp|A3M1K2|RIMP_ACIBT RecName: Full=Ribosome maturation factor rimP gi|226706136|sp|B7I3R7|RIMP_ACIB5 RecName: Full=Ribosome maturation factor rimP gi|169150336|emb|CAM88233.1| conserved hypothetical protein [Acinetobacter baumannii AYE] gi|183208262|gb|ACC55660.1| uncharacterized protein conserved in bacteria [Acinetobacter baumannii ACICU] gi|193076181|gb|ABO10796.2| hypothetical protein A1S_0334 [Acinetobacter baumannii ATCC 17978] gi|213054937|gb|ACJ39839.1| conserved hypothetical protein [Acinetobacter baumannii AB0057] gi|213988150|gb|ACJ58449.1| conserved hypothetical protein [Acinetobacter baumannii AB307-0294] gi|260410356|gb|EEX03655.1| UPF0090 protein [Acinetobacter baumannii ATCC 19606] gi|322506555|gb|ADX02009.1| Putative uncharacterized protein [Acinetobacter baumannii 1656-2] gi|323516434|gb|ADX90815.1| hypothetical protein ABTW07_0378 [Acinetobacter baumannii TCDC-AB0715] gi|332727506|gb|EGJ58932.1| hypothetical protein HMPREF0021_03428 [Acinetobacter baumannii 6013150] gi|332733824|gb|EGJ64971.1| hypothetical protein HMPREF0020_01378 [Acinetobacter baumannii 6013113] gi|332738588|gb|EGJ69458.1| hypothetical protein HMPREF0022_00636 [Acinetobacter baumannii 6014059] Length = 174 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 41/179 (22%), Positives = 73/179 (40%), Gaps = 23/179 (12%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERD-------------- 60 + + +I P +E I L K LL+I+++R Sbjct: 1 MKLSNKSQALYDMIAPAVEACGVDLWGIEFLPQGKRSLLRIYIDRPVDENAEPVINEDGE 60 Query: 61 ---DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + + DC ++Q + +LDV + I G Y LEVSSPG DRP + + G V Sbjct: 61 VEQGRGIGVEDCVRVTQQVGAMLDVHDPISGEYALEVSSPGWDRPFFQLEQLQGYIGQQV 120 Query: 118 ACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 A ++ + +++K K++ ++ E G+ + I +++ A LI D Sbjct: 121 ALRLIAAVENRRKFQAKLLAVDLENEEIQVEVEGK-----HVLDIDSNNIDKANLIYQD 174 >gi|199597101|ref|ZP_03210533.1| hypothetical protein LRH_07196 [Lactobacillus rhamnosus HN001] gi|258508611|ref|YP_003171362.1| hypothetical protein LGG_01616 [Lactobacillus rhamnosus GG] gi|258539790|ref|YP_003174289.1| hypothetical protein LC705_01599 [Lactobacillus rhamnosus Lc 705] gi|199591905|gb|EDY99979.1| hypothetical protein LRH_07196 [Lactobacillus rhamnosus HN001] gi|257148538|emb|CAR87511.1| Conserved hypotehtical protein [Lactobacillus rhamnosus GG] gi|257151466|emb|CAR90438.1| Conserved hypotehtical protein [Lactobacillus rhamnosus Lc 705] gi|259649918|dbj|BAI42080.1| conserved hypothetical protein [Lactobacillus rhamnosus GG] Length = 159 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 74/161 (45%), Gaps = 8/161 (4%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 + ++++++P++++ F + ++ L++++++ G +TL +C +S+ Sbjct: 1 MSTQSVVETVTALVKPILDDHHFYLTDVEFVKEGGGWYLRVYIDKP-GGITLDECVLVSE 59 Query: 75 AISPILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 A+S LD + I Y LEVSSPG +RP+ R++D+ + G + + K+ Sbjct: 60 ALSEQLDAINPDPIPQQYFLEVSSPGAERPLKRETDYEQAIGDYIHVSLFKKLDGKKVFE 119 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 G + L + + K I + SARL Sbjct: 120 GTLKDLKPDQLTLTVKDKSRKFDQ----VIDRKLIASARLA 156 >gi|307579212|gb|ADN63181.1| hypothetical protein XFLM_06240 [Xylella fastidiosa subsp. fastidiosa GB514] Length = 176 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 84/166 (50%), Gaps = 14/166 (8%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVE-----RDDGNMTLRDC 69 D G+ I +++ P +E + F + L +L+++++ + + +++ DC Sbjct: 1 MSDKGIE--IVNLLAPKVEMLGFDLLGAEYLLVPSGAILRLYIDIPFAMQPECMVSIDDC 58 Query: 70 EELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ 129 E +S+ +S LD+E I G+Y LEVSSPG+DR + F R + H+V + L + Sbjct: 59 ERVSREVSAYLDLEEPISGNYTLEVSSPGLDRRLFTLEQFARHHNHLVKVGLKLQQHGSR 118 Query: 130 KLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +L GKI+ + +N +++A+ F+++ AR++ Sbjct: 119 RLQGKIVRVE------QVGGFVVLLVNGVELAVDFNNIDKARIVPD 158 >gi|218133588|ref|ZP_03462392.1| hypothetical protein BACPEC_01457 [Bacteroides pectinophilus ATCC 43243] gi|217990963|gb|EEC56969.1| hypothetical protein BACPEC_01457 [Bacteroides pectinophilus ATCC 43243] Length = 155 Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 34/148 (22%), Positives = 75/148 (50%), Gaps = 2/148 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 +I P+I+ F V + ++ + L++++++ DG +T+ DCE++S+A + IL Sbjct: 8 EKKTEELITPLIDAEGFELVDVEYVKEGADWYLRVYIDK-DGGITVNDCEKISRAFNEIL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D E+ I+ Y EVSSPG+ RP+ + D+ R G ++ ++ ++ ++ + Sbjct: 67 DREDYIDDAYIFEVSSPGLLRPLKKDKDYQRNLGKLLEVKLFAPLNGVKEFEAELKSYDK 126 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLL 168 L + E + +I++ ++ Sbjct: 127 ESATLVMDDDTEVTVKRSEISLIRPAIE 154 >gi|238924308|ref|YP_002937824.1| hypothetical protein EUBREC_1947 [Eubacterium rectale ATCC 33656] gi|259585772|sp|C4ZBF8|RIMP_EUBR3 RecName: Full=Ribosome maturation factor rimP gi|238875983|gb|ACR75690.1| protein of unknown function DUF150 [Eubacterium rectale ATCC 33656] gi|291525078|emb|CBK90665.1| Uncharacterized protein conserved in bacteria [Eubacterium rectale DSM 17629] gi|291529173|emb|CBK94759.1| Uncharacterized protein conserved in bacteria [Eubacterium rectale M104/1] Length = 155 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 73/142 (51%), Gaps = 2/142 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPIL 80 S IQP+++ M+F V + ++E + L+ ++++ +G +T+ DCE +++ ++ IL Sbjct: 8 EAKTESFIQPILDSMNFELVDVEYVKEGGMNYLRAYIDK-EGGITVDDCEVVARQMNEIL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D E+ I Y EVSSPG+ RP+ ++ D++R + + ++ G + + Sbjct: 67 DREDYIPDSYTFEVSSPGLGRPLKKEKDYVRNMNKEIEIRTYRAINKSKEFYGLLKAYDK 126 Query: 141 TGFFLEKEKRGEKDMNELQIAI 162 + E E N+ IA+ Sbjct: 127 DTVTITDEDGNETTFNKSDIAL 148 >gi|332968910|gb|EGK07957.1| protein of hypothetical function DUF150 [Kingella kingae ATCC 23330] Length = 145 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 73/151 (48%), Gaps = 15/151 (9%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 DI +++ + + + V L + L++F+++ +G +T+ DC +S ++ + VE Sbjct: 2 DIQNILDTTLPGLGYELVDFELTAQG--TLRVFIDK-EGGITVEDCATVSNHLNRVFMVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE--T 141 ++ + LE+SSPG+DRP+ + SDF+R+ G + L ++ IG+I E Sbjct: 59 DV--DYKNLEISSPGLDRPLKKASDFVRFAGSQAKIKTRLPVDGQKNFIGRIESFDEATQ 116 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 L + + I ++ AR+ Sbjct: 117 MITLSFDGKVA--------QIELSNVDKARI 139 >gi|94986975|ref|YP_594908.1| transcription elongation factor [Lawsonia intracellularis PHE/MN1-00] gi|167013025|sp|Q1MQZ0|RIMP_LAWIP RecName: Full=Ribosome maturation factor rimP gi|94731224|emb|CAJ54587.1| transcription elongation factor [Lawsonia intracellularis PHE/MN1-00] Length = 196 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 68/171 (39%), Gaps = 17/171 (9%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVE--------------RDDGNMT 65 L I+ +I P+I + I L+ +++IFV+ +T Sbjct: 5 ALIETITQLISPLITAQGLKLWGIELINIPQPIIKIFVDTIETNRLHENNIINSKSEQIT 64 Query: 66 LRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS- 124 + C LS+ I L+VE + + LEVSSPG++R + H + + Sbjct: 65 IEQCASLSRLIGLTLEVEELFPNKWTLEVSSPGLERSFFTIQQLSNYINHDIDVTLKEQH 124 Query: 125 --SGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 +++K G ++ ++ F L K ++I++ + A L+ Sbjct: 125 PLWPNRKKFYGTLISITDNTFMLNLSLAHRKSDEPENVSINWQQVRKATLV 175 >gi|262370082|ref|ZP_06063409.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] gi|262315121|gb|EEY96161.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] Length = 174 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 72/179 (40%), Gaps = 23/179 (12%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVER--------------- 59 + +I P ++ I L K LL+I++++ Sbjct: 1 MKLSNKTQALQDLIAPAVQACGVDLWGIEFLPQGKRSLLRIYIDKAVDENAEPIINEDGE 60 Query: 60 --DDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + ++DC ++Q + ++DV + I G Y LEVSSPG DRP + + G + Sbjct: 61 EEQGRGIGVQDCVRVTQQVGAMMDVHDPISGEYALEVSSPGWDRPFFQLEQLPAYIGQQI 120 Query: 118 ACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 A ++ + +++K K++ ++ E + + I +++ A L+ D Sbjct: 121 AFRLISAVDNRRKFQAKLVAVDLEAEMIQVEVEKQ-----QVLEIDSNNIDKANLVYQD 174 >gi|166030877|ref|ZP_02233706.1| hypothetical protein DORFOR_00557 [Dorea formicigenerans ATCC 27755] gi|166029144|gb|EDR47901.1| hypothetical protein DORFOR_00557 [Dorea formicigenerans ATCC 27755] Length = 157 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 40/144 (27%), Positives = 72/144 (50%), Gaps = 4/144 (2%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++ P++EE+ F V + ++E + L+ ++++ G +T+ DCE +S+ +S IL Sbjct: 8 EQKTEEILNPIMEELEFELVDVEYVKEGSMWYLRAYIDKP-GGITVNDCEAVSRRLSDIL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS- 139 D ++ IE Y LEVSSPG+ RP+ ++ D+ R G V K++ G + Sbjct: 67 DEKDFIEDSYVLEVSSPGLGRPLKKEKDYKRNLGKEVEIRTYRMVDKKKEFTGLLDSYDY 126 Query: 140 -ETGFFLEKEKRGEKDMNELQIAI 162 +E E K + IA+ Sbjct: 127 EAGTVTIELEDGTMKTFEKGDIAL 150 >gi|323144580|ref|ZP_08079169.1| hypothetical protein HMPREF9444_01845 [Succinatimonas hippei YIT 12066] gi|322415656|gb|EFY06401.1| hypothetical protein HMPREF9444_01845 [Succinatimonas hippei YIT 12066] Length = 175 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 73/155 (47%), Gaps = 8/155 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 + I +++P+IE + ++ LLQIF++ D ++ C +++ +SP Sbjct: 18 IEEKIDELVRPLIEASDLILWGVRYRGGRDSALLQIFIDSKD-GVSADTCGDITNMLSPA 76 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD +II Y LEVSSPG DR + + G + E+ + G ++K G + + Sbjct: 77 LDAADIIAPAYILEVSSPGFDRILFTLDQARAYIGKKIKAEVRIPVGGRRKFEGVLEEVT 136 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E L+ + Q+ I+F ++ ARL+ Sbjct: 137 EDN-SLKINDKI-----SGQVEIAFSNISVARLVP 165 >gi|160940463|ref|ZP_02087808.1| hypothetical protein CLOBOL_05353 [Clostridium bolteae ATCC BAA-613] gi|158437043|gb|EDP14810.1| hypothetical protein CLOBOL_05353 [Clostridium bolteae ATCC BAA-613] Length = 155 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 39/146 (26%), Positives = 72/146 (49%), Gaps = 2/146 (1%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAI 76 + + P++EE F V + ++E L+ ++++ +G + + DCE +S+A+ Sbjct: 4 KESYESRVEKHLLPLMEEHGFELVDVEYVKEAGTWYLRAYIDK-EGGIAVDDCEVISRAL 62 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 S LD E+ I+ Y LEVSSPG+ RP+ ++ DF+R G V + +++ G + Sbjct: 63 SDWLDKEDFIDDSYILEVSSPGLGRPLKKERDFVRSMGKDVDVRLYRQLNKQKEFTGALS 122 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAI 162 E L E + + IA+ Sbjct: 123 AYDENTVTLTMEDGSQMVFEKADIAL 148 >gi|322418687|ref|YP_004197910.1| hypothetical protein GM18_1160 [Geobacter sp. M18] gi|320125074|gb|ADW12634.1| protein of unknown function DUF150 [Geobacter sp. M18] Length = 159 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 78/165 (47%), Gaps = 14/165 (8%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ +I + + V + E +++++F+E+ +G +TL DC ++S+ Sbjct: 1 MAKVDVVERVTEIITEIGAPLGIGLVDLEYKREGRDMVVRVFLEK-EGGITLDDCADVSR 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS-----GDKQ 129 +S ILDVE+ + Y LEVSSPGI RP+ + +D+ R+ GH+V + + ++ Sbjct: 60 QLSDILDVEDFMPERYTLEVSSPGICRPLKKVADYERFMGHLVKVKTFDTLTDDAGNKRK 119 Query: 130 KLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 GK+ G ++ +I D + A L Sbjct: 120 TFTGKLAGIQGGVVSIDL-------TEGQHASIPLDKVAKANLEF 157 >gi|170754643|ref|YP_001781965.1| hypothetical protein CLD_2218 [Clostridium botulinum B1 str. Okra] gi|226701221|sp|B1II53|RIMP_CLOBK RecName: Full=Ribosome maturation factor rimP gi|169119855|gb|ACA43691.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra] Length = 153 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 75/158 (47%), Gaps = 10/158 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 L ++ I+P+ E + + I ++ K L+I+++ + ++L CE++S+ Sbjct: 1 MSKHSLIENLKKQIEPIAEGLDYELYHIEFVKEGKENYLRIYIDS-ENGVSLEGCEKVSR 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S +LD + I+ Y LEVSSPGIDR + ++ G+ + + K+K G+ Sbjct: 60 AVSELLDDIDPIQESYYLEVSSPGIDRVLYTDKHLQKYKGYNIVLNLYSPIDKKKKYEGE 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ +E ++ E E + I + + L Sbjct: 120 LVDFNENEINIKVE--------ENIVTIPREKISKTTL 149 >gi|299067339|emb|CBJ38536.1| conserved protein of unknown function [Ralstonia solanacearum CMR15] Length = 149 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 66/139 (47%), Gaps = 4/139 (2%) Query: 36 MSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVS 95 M + V++ + LL++++++ + + + DCE++S ++ + +VEN+ + RLEVS Sbjct: 1 MGYELVEVERAPDG--LLRVYIDQAETGIVIEDCEKVSHQLTRVFEVENV--NYERLEVS 56 Query: 96 SPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDM 155 SPG+DRP+ DF R+ G V + L ++ G + + E Sbjct: 57 SPGLDRPLRTLVDFTRFAGLEVKVTLRLPVNGQKNFTGIVQAPAGEPGQERIGLEFEGKD 116 Query: 156 NELQIAISFDSLLSARLIV 174 + + L ARL+ Sbjct: 117 GPALLEFTLSELDRARLVP 135 >gi|254302279|ref|ZP_04969637.1| hypothetical protein FNP_2331 [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322471|gb|EDK87721.1| hypothetical protein FNP_2331 [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 156 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 77/155 (49%), Gaps = 11/155 (7%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I+ +I P IEEM V + +++ ++IF+E +G++ + DC +LS I Sbjct: 7 IVEKITKIINPFIEEMGLSLVDVEYVQDGGYWYVRIFIENLNGDLNIEDCSKLSSKIED- 65 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 VE +IE + LEVSSPG++RP+ + D++R+ G + + DK++ I + Sbjct: 66 -KVEELIEHKFFLEVSSPGLERPLKKLEDYIRFTGEKITLHLKHKLDDKKQFKAIIKEVN 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +K+ +I I F+ + A ++ Sbjct: 125 GDNIIFLIDKK--------EIEIKFNEIRKANILF 151 >gi|253681731|ref|ZP_04862528.1| conserved hypothetical protein [Clostridium botulinum D str. 1873] gi|253561443|gb|EES90895.1| conserved hypothetical protein [Clostridium botulinum D str. 1873] Length = 154 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 74/148 (50%), Gaps = 10/148 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 I+ +++P++E +++ I + E L+I+++ + L DCE++S+ +S +LD Sbjct: 9 DKINELVRPIVEGLNYELYYIEYVREQNENYLRIYIDSS-KGINLEDCEKVSRKVSDMLD 67 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 ++ IE Y LEVSSPGI+R + ++ + + ++ ++ GK++ ++ Sbjct: 68 EKDPIEDGYYLEVSSPGIERVLHTDEHLHKYINNQIVIKLAKLFEGSREHQGKLLNFNDE 127 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLS 169 ++K+ I+I D + Sbjct: 128 SITIQKDNES--------ISIPRDRIKK 147 >gi|164688522|ref|ZP_02212550.1| hypothetical protein CLOBAR_02167 [Clostridium bartlettii DSM 16795] gi|164602935|gb|EDQ96400.1| hypothetical protein CLOBAR_02167 [Clostridium bartlettii DSM 16795] Length = 153 Score = 108 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 86/159 (54%), Gaps = 9/159 (5%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQA 75 + I ++QP+++ + V I ++E L+I++E+ +G +TL DC E+S+ Sbjct: 1 MKKNIESTIEELVQPIVDARNIEIVDIEYVKEAGQFYLRIYLEK-EGGITLDDCAEVSRE 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 ++PILD ++ I+ +Y LEV SPG+DRP+ ++ DF+R+ G+ V ++ ++L G Sbjct: 60 LNPILDEKDPIKDNYFLEVCSPGLDRPLKKEKDFIRYAGYDVEIKLYKPLNGTKQLEG-- 117 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L ++K+ + ++ ++ + +L V Sbjct: 118 -----ELIGLTEDKKIKVVIDNNEVEFDKKDIALIKLAV 151 >gi|218887602|ref|YP_002436923.1| hypothetical protein DvMF_2516 [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|226701448|sp|B8DN15|RIMP_DESVM RecName: Full=Ribosome maturation factor rimP gi|218758556|gb|ACL09455.1| protein of unknown function DUF150 [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 226 Score = 108 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 73/183 (39%), Gaps = 30/183 (16%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVE---------------------- 58 L ++++ P+ + + I +++ ++L+++V+ Sbjct: 6 LRDAVAAIATPLADALGIALWGIEIIDGGRMVLRVYVDAKPGMPVPADTAEATESATPEG 65 Query: 59 -----RDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWN 113 +T+ C LS+ + LDVE+++ Y LEVSSPG++RP + + + Sbjct: 66 VALEGSTPEGVTIDQCARLSRQLGLALDVEDVVRDAYVLEVSSPGLERPFFEIAQVVPYV 125 Query: 114 GHVVACEIVLS---SGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 G + + + ++K I+ + D + I++++D + A Sbjct: 126 GRTIELTLAVPHPEWPGRRKFRADIVRVEGDTLTFLPDTAPRPDEDPAPISVAWDDVKKA 185 Query: 171 RLI 173 LI Sbjct: 186 HLI 188 >gi|331269631|ref|YP_004396123.1| hypothetical protein CbC4_1447 [Clostridium botulinum BKT015925] gi|329126181|gb|AEB76126.1| Hypothetical UPF0090 protein [Clostridium botulinum BKT015925] Length = 154 Score = 108 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 74/148 (50%), Gaps = 10/148 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 I+ +++P++E +++ I + E L+I+++ + L DC+++S+ +S +LD Sbjct: 9 DKINELVRPIVEGLNYELYYIEYVREQNENYLRIYIDSS-KGINLEDCQKVSRKVSDMLD 67 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 ++ IE Y LEVSSPGI+R + ++ + + ++ ++ GK++ ++ Sbjct: 68 EKDPIEDGYYLEVSSPGIERILHTDEHLHKYINNQIVIKLAKLFEGSREHQGKLLSFNDE 127 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLS 169 +EK+ ++I D + Sbjct: 128 SITMEKDNE--------NVSIPRDRIKK 147 >gi|225374839|ref|ZP_03752060.1| hypothetical protein ROSEINA2194_00460 [Roseburia inulinivorans DSM 16841] gi|225213300|gb|EEG95654.1| hypothetical protein ROSEINA2194_00460 [Roseburia inulinivorans DSM 16841] Length = 162 Score = 108 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 35/150 (23%), Positives = 76/150 (50%), Gaps = 2/150 (1%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEEL 72 + +I P+++ +F V + ++E + L++++++ +G +T DC ++ Sbjct: 7 HMSKKEMYEARTEELITPILDRRNFELVDVEYVKEGSTWYLRVYIDK-EGGITSDDCADV 65 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+ ++ ILD E+ +EG Y EVSSPG+ RP+ ++ D++R G + + +++ Sbjct: 66 SREMNEILDREDYVEGSYTFEVSSPGLGRPLKKEKDYIRSMGKELEIRTYRAIDREKEFY 125 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAI 162 G + +E+E E + IA+ Sbjct: 126 GILKAYDADTVTIEQEDGKEMVFEKSNIAL 155 >gi|91208368|sp|Q3SKW9|RIMP_THIDA RecName: Full=Ribosome maturation factor rimP Length = 142 Score = 108 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 40/144 (27%), Positives = 80/144 (55%), Gaps = 13/144 (9%) Query: 29 IQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEG 88 ++PV+ + + V + LL+IF+++ G +T+ DC +S ++ + VENI Sbjct: 8 LEPVLAGLGYELVMLE--RAGRGLLRIFIDKP-GGVTIDDCVAVSNHLTHLFTVENI--D 62 Query: 89 HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKE 148 + RLEVSSPG+DRP+V+ D+ R+ G V ++ + ++++L G+++G L + Sbjct: 63 YDRLEVSSPGLDRPLVKPQDYARFAGEQVTLKLRVPMDNRRRLSGQLLGLESDAVKLVVD 122 Query: 149 KRGEKDMNELQIAISFDSLLSARL 172 R ++++ ++ +ARL Sbjct: 123 GR--------EMSVDLRNVDAARL 138 >gi|297170975|gb|ADI21990.1| uncharacterized protein conserved in bacteria [uncultured myxobacterium HF0200_01L06] Length = 170 Score = 108 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 77/156 (49%), Gaps = 11/156 (7%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVER--DDGNMTLRDCEELSQAIS 77 + ++ ++I+PV+E+ V +++ + +++I ++R + + + C E+S+ + Sbjct: 4 DIPEELRTLIEPVLEDHGCELVD-TIVLNRPKVVRIIIDRASEGRGVGIDLCAEISREVG 62 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD IEG YRLEVSSPG+ R + R+ DF G V +++ G+++ Sbjct: 63 TQLDAAEAIEGSYRLEVSSPGLHRVLSREKDFRAACGQNVNVTTKGLIDGRRRFNGQLLE 122 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + +E + +++ I FD + A L+ Sbjct: 123 FGDGLARVEVDG--------VRVGIPFDQIEKANLV 150 >gi|227499046|ref|ZP_03929183.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|226904495|gb|EEH90413.1| conserved hypothetical protein [Acidaminococcus sp. D21] Length = 153 Score = 108 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 73/156 (46%), Gaps = 8/156 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 + +S + P+ E V + + E++ L++++++ +G + + DC +S Sbjct: 1 MDKKKIVEQVSELALPICEACGVELVDVEYVRERDWYLRVYIDK-EGGIDIDDCTAVSGD 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 + +LD +++I+ Y LEVSSPGIDRP+ + SD++ G + K+ ++ Sbjct: 60 LEKVLDEKDVIKEQYYLEVSSPGIDRPLKKDSDYVDHYGKKIDVSFYAPFEGKKVQTYEL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 + E + K+ + ++ + + S R Sbjct: 120 VSHDEAHLVV-------KNFKKQKVTLERSLISSVR 148 >gi|237736657|ref|ZP_04567138.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817] gi|229420519|gb|EEO35566.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817] Length = 160 Score = 108 bits (269), Expect = 6e-22, Method: Composition-based stats. Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 10/163 (6%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAI 76 + I ++ PV+ EM V I +++ ++I+VE +G +TL +C +S I Sbjct: 7 QQKIIEKIEKIVTPVVNEMGLSLVDIEYMQDGGYWYVRIYVENLNGEITLEECAAISGKI 66 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 DV+ +IE + LEVSSPGI+RP+ + DF+R+ G + + DK+ G I Sbjct: 67 DE--DVDKLIEQRFFLEVSSPGIERPLKKIEDFIRFKGEKIKVSLKHKINDKKSFEGIIT 124 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELL 179 + FLE E+ ++ F + A +I + + Sbjct: 125 ECKDNIIFLEIEEENIVEI-------PFSEVKKANIIYEFDEI 160 >gi|291536068|emb|CBL09180.1| Uncharacterized protein conserved in bacteria [Roseburia intestinalis M50/1] gi|291538563|emb|CBL11674.1| Uncharacterized protein conserved in bacteria [Roseburia intestinalis XB6B4] Length = 155 Score = 108 bits (269), Expect = 6e-22, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 74/155 (47%), Gaps = 9/155 (5%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPIL 80 +I P+++ M+F V + ++E L+ ++++ +G +T+ DCE +++ ++ IL Sbjct: 8 ETRTEELITPILDRMNFELVDVEYVKEGGTWYLRAYIDK-EGGITVNDCEAVAREMNEIL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D E+ +E Y EVSSPG+ RP+ ++ D++R G V + +++ G + E Sbjct: 67 DREDFVEDSYVFEVSSPGLGRPLKKEKDYIRSMGKEVEIRTYRAINREKEFYGILSAYDE 126 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 ++ E ++ + RL Sbjct: 127 NTVTIKTED-------GTEMTFEKSDIALIRLAFD 154 >gi|282848826|ref|ZP_06258219.1| conserved hypothetical protein [Veillonella parvula ATCC 17745] gi|294791738|ref|ZP_06756886.1| conserved hypothetical protein [Veillonella sp. 6_1_27] gi|294793599|ref|ZP_06758736.1| conserved hypothetical protein [Veillonella sp. 3_1_44] gi|282581480|gb|EFB86870.1| conserved hypothetical protein [Veillonella parvula ATCC 17745] gi|294455169|gb|EFG23541.1| conserved hypothetical protein [Veillonella sp. 3_1_44] gi|294456968|gb|EFG25330.1| conserved hypothetical protein [Veillonella sp. 6_1_27] Length = 152 Score = 108 bits (269), Expect = 6e-22, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 75/157 (47%), Gaps = 9/157 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 + +SSV++ +I V + + E++ L++++++ G + L DC+ +S+ Sbjct: 1 MKREAVEEFVSSVVEGIIAGTDMELVDVDYVRERDWYLRVYLDKP-GGVDLDDCQLVSEK 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LD ++ I +Y LEVSSPG+DR + + D +R+NG V ++ ++ G + Sbjct: 60 LSAVLDEKDPITENYLLEVSSPGLDRVLKKDKDLVRYNGRDVDIQLFKPVNGSKQFTGAL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G ++T I ++ RL Sbjct: 120 QGFTDTSIDFTINGES--------ITFERSAIAQIRL 148 >gi|315924375|ref|ZP_07920597.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC 23263] gi|315622254|gb|EFV02213.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC 23263] Length = 162 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 72/157 (45%), Gaps = 9/157 (5%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 M I +++P + + + + K +L ++++R + ++L DCE++S+ Sbjct: 10 RKMARKDAIYELLKPQVTTLGYELYDVDFEKAGKKRILTVYIDRKE-GISLEDCEKVSRE 68 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 IS LD + I Y L+VSSPG++R + R + G ++ ++ + +++L + Sbjct: 69 ISAFLDAADPIAETYTLQVSSPGLERKLTRLKHYRAVVGEMIDLKLFEAIDGQKQLCAVL 128 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + ++ + + + I F S+ A L Sbjct: 129 RFVDDEKIVVQ-------EGDAEPLTIPFKSIAKASL 158 >gi|300361903|ref|ZP_07058080.1| protein of hypothetical function DUF150 [Lactobacillus gasseri JV-V03] gi|300354522|gb|EFJ70393.1| protein of hypothetical function DUF150 [Lactobacillus gasseri JV-V03] Length = 172 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 70/156 (44%), Gaps = 7/156 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQAIS 77 + ++ V+ P+ E V + ++EK L+I+V+R G + + + LS+ +S Sbjct: 16 TKVTELVADVVTPLAEARGDELVDVEYVKEKKQYYLRIYVDRRPGGIDIEEIANLSELVS 75 Query: 78 PILDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + Y LE+SSPG++RP+ + D+ R G + + ++ G + Sbjct: 76 EKLDELDPDPFPEPYILELSSPGLERPIKNEKDWERAKGSYIHVSLYQKIDGEKTYEGTL 135 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 ++ LE + +I I ++ S+R Sbjct: 136 KDLNQDQIVLEV----KIKTRRKEITIPRKTIASSR 167 >gi|227529105|ref|ZP_03959154.1| protein of hypothetical function DUF150 [Lactobacillus vaginalis ATCC 49540] gi|227350949|gb|EEJ41240.1| protein of hypothetical function DUF150 [Lactobacillus vaginalis ATCC 49540] Length = 165 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 37/160 (23%), Positives = 75/160 (46%), Gaps = 8/160 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + +S + +P++ + + ++ K+ L+++V++ DG +TL DC ++S +S Sbjct: 7 SNVVEIVSGLAKPILAKHDCYLYDLEFVKEGKSWYLRVYVDK-DGGVTLEDCADISDELS 65 Query: 78 PILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + I Y LEVSSPG +RP+ +++D+ R + + K+ G + Sbjct: 66 EALDNTEPDPIPQAYFLEVSSPGAERPLKKEADYERAINDYIHVSLYQQIEGKKAYEGTL 125 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + + LE + + +I I + ARL + Sbjct: 126 VELTPDELTLEYMDK----TRQRRIKIERKMIAQARLAID 161 >gi|303240819|ref|ZP_07327332.1| protein of unknown function DUF150 [Acetivibrio cellulolyticus CD2] gi|302591707|gb|EFL61442.1| protein of unknown function DUF150 [Acetivibrio cellulolyticus CD2] Length = 153 Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 39/123 (31%), Positives = 71/123 (57%), Gaps = 2/123 (1%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQ 74 + ++ +PV+ F V + ++E N L+I++++ G +T+ DC+ +S+ Sbjct: 1 MVKRKIEEIVAEFAEPVVANHYFELVDVEFIKEGTNWYLRIYIDKP-GGITIDDCQIISE 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 IS ILD ++ IE Y LEVSSPG+DRP+ ++SDF R+ G +V ++ ++ G Sbjct: 60 EISDILDKKDPIEQSYFLEVSSPGLDRPLKKESDFERFKGELVEVKVFKPIDGRKIFEGN 119 Query: 135 IMG 137 ++G Sbjct: 120 LLG 122 >gi|259016311|sp|Q7NFN6|RIMP_GLOVI RecName: Full=Ribosome maturation factor rimP Length = 156 Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 75/156 (48%), Gaps = 10/156 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + ++++ +PV E++ + V ++ K L++ + L DCE++S+A+ Sbjct: 5 DIVEQVTALAEPVAEQLGLQLVAVAYQTHTKPATLRVDIRHPTEGTGLDDCEKMSRALEA 64 Query: 79 ILD-VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LD +++I G Y LEVSSPG++R + +F+ + G V + K++ G+++ Sbjct: 65 LLDTRDDLIIGAYNLEVSSPGVERVLTTDREFMAFRGFPVMVKTFGPVDGKKQWEGRLLE 124 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 +L R ++A+ + +L+ Sbjct: 125 RDGENVYLTIAGR--------RVALPRPQVARVQLV 152 >gi|169634555|ref|YP_001708291.1| hypothetical protein ABSDF3182 [Acinetobacter baumannii SDF] gi|226703734|sp|B0VLU4|RIMP_ACIBS RecName: Full=Ribosome maturation factor rimP gi|169153347|emb|CAP02460.1| conserved hypothetical protein [Acinetobacter baumannii] Length = 174 Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 41/179 (22%), Positives = 73/179 (40%), Gaps = 23/179 (12%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVER--------------- 59 + + +I P +E I L K LL+I+++R Sbjct: 1 MKLSNKSQALYDMIAPAVEACGVDLWGIEFLPQGKRSLLRIYIDRTVDENAEPVINEDGE 60 Query: 60 --DDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + + DC ++Q + +LDV + I G Y LEVSSPG DRP + + G V Sbjct: 61 VEQGRGIGVEDCVRVTQQVGAMLDVHDPISGEYALEVSSPGWDRPFFQLEQLQGYIGQQV 120 Query: 118 ACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 A ++ + +++K K++ ++ E G+ + I +++ A LI D Sbjct: 121 ALRLIAAVENRRKFQAKLLAVDLENEEIQVEVEGK-----HVLDIDSNNIDKANLIYQD 174 >gi|257791561|ref|YP_003182167.1| hypothetical protein Elen_1813 [Eggerthella lenta DSM 2243] gi|325833208|ref|ZP_08165714.1| hypothetical protein HMPREF9404_3885 [Eggerthella sp. HGA1] gi|257475458|gb|ACV55778.1| protein of unknown function DUF150 [Eggerthella lenta DSM 2243] gi|325485590|gb|EGC88058.1| hypothetical protein HMPREF9404_3885 [Eggerthella sp. HGA1] Length = 159 Score = 107 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 57/157 (36%), Gaps = 11/157 (7%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQA 75 + + P E+ V + + K ++++++ D ++ + Sbjct: 1 MLSKKEQQLLDALAPRAEQEGVEIVTVEVAGAKKAPTIRVYIDTPD-GVSFDELSSAQAW 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I+ ++D + G Y LEVSSPGIDRP+ F R+ G + + G I Sbjct: 60 INDLMDELDPFPGAYTLEVSSPGIDRPLRTAEHFARFVGDTAVLKT-QPVDGRGSWTGAI 118 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 L+ + + I D++ A L Sbjct: 119 ASVEGDVVVLDVDG--------AEARIPMDTIKRAHL 147 >gi|148380377|ref|YP_001254918.1| hypothetical protein CBO2421 [Clostridium botulinum A str. ATCC 3502] gi|153933725|ref|YP_001384597.1| hypothetical protein CLB_2286 [Clostridium botulinum A str. ATCC 19397] gi|153935745|ref|YP_001388113.1| hypothetical protein CLC_2269 [Clostridium botulinum A str. Hall] gi|166987426|sp|A7FVZ7|RIMP_CLOB1 RecName: Full=Ribosome maturation factor rimP gi|166987470|sp|A5I4J7|RIMP_CLOBH RecName: Full=Ribosome maturation factor rimP gi|148289861|emb|CAL83969.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 3502] gi|152929769|gb|ABS35269.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 19397] gi|152931659|gb|ABS37158.1| conserved hypothetical protein [Clostridium botulinum A str. Hall] Length = 153 Score = 107 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 74/158 (46%), Gaps = 10/158 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 L ++ I+P+ E + + I ++ K L+I+++ + ++L CE++S+ Sbjct: 1 MSKHSLIENLKEQIEPIAEGLDYELYHIEFVKEGKENYLRIYIDS-ENGVSLEGCEKVSR 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 AIS +LD + I+ Y LEVSSPGIDR + ++ + + + K+K G+ Sbjct: 60 AISELLDDIDPIQESYYLEVSSPGIDRVLYTDKHLEKYKSYNIVLNLYSPIDKKKKYEGE 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ +E ++ E E + I + + L Sbjct: 120 LVDFNENEIDIKVE--------ENIVTIPREKISKTTL 149 >gi|170759112|ref|YP_001787733.1| hypothetical protein CLK_1798 [Clostridium botulinum A3 str. Loch Maree] gi|226695970|sp|B1KWL1|RIMP_CLOBM RecName: Full=Ribosome maturation factor rimP gi|169406101|gb|ACA54512.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch Maree] Length = 153 Score = 107 bits (267), Expect = 9e-22, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 76/158 (48%), Gaps = 10/158 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 L ++ I+P++E +++ I ++ K L+I+++ + +L CE++S+ Sbjct: 1 MSKHNLIENLKKQIEPIVEGLNYELYHIEFVKEGKENYLRIYIDS-ENGASLEGCEKVSR 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S +LD + I+ Y LEVSSPGIDR + ++ G+ + + K+K G+ Sbjct: 60 AVSELLDDIDPIQESYYLEVSSPGIDRVLYTDKHLEKYKGYNIILNLYSPIDKKKKYEGE 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ +E ++ E E + I + + L Sbjct: 120 LIDFNENEINIKVE--------ENIVTIPREKISKTTL 149 >gi|288871536|ref|ZP_06117961.2| protein associated with NUS operon [Clostridium hathewayi DSM 13479] gi|288863081|gb|EFC95379.1| protein associated with NUS operon [Clostridium hathewayi DSM 13479] Length = 162 Score = 107 bits (267), Expect = 9e-22, Method: Composition-based stats. Identities = 39/142 (27%), Positives = 71/142 (50%), Gaps = 2/142 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + P++EE F V + ++E N L+ ++++ +G +T+ DCE +S+ + L Sbjct: 15 EKKTEDYLLPLMEEYHFELVDVEYVKEAGNWYLRAYIDK-EGGITVDDCEVVSRRLGDWL 73 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D ++ IE Y LEVSSPG+ RP+ + DF R G V ++ ++ G + + Sbjct: 74 DEKDFIEDSYILEVSSPGLGRPLKKDKDFDRSIGKDVDIKLYKPMNKQKDYTGTLKAYDK 133 Query: 141 TGFFLEKEKRGEKDMNELQIAI 162 + E E +N +IA+ Sbjct: 134 DTVTVTVEDGTELVLNRPEIAL 155 >gi|255655318|ref|ZP_05400727.1| hypothetical protein CdifQCD-2_06375 [Clostridium difficile QCD-23m63] gi|296451303|ref|ZP_06893043.1| protein of hypothetical function DUF150 [Clostridium difficile NAP08] gi|296880345|ref|ZP_06904308.1| protein of hypothetical function DUF150 [Clostridium difficile NAP07] gi|296259909|gb|EFH06764.1| protein of hypothetical function DUF150 [Clostridium difficile NAP08] gi|296428586|gb|EFH14470.1| protein of hypothetical function DUF150 [Clostridium difficile NAP07] Length = 153 Score = 107 bits (267), Expect = 9e-22, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 79/158 (50%), Gaps = 9/158 (5%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQA 75 L I ++ + +E F V + ++E L++++++++ ++L +CE +S+ Sbjct: 1 MKKNLEATIEEIVTKITDEHGFEMVDVEYVKEAGEYYLRVYIDKEE-GISLNECELVSRE 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +SPILD ++ I+ +Y LEVSSPG+DR + + DF+R+ G V ++ ++ G Sbjct: 60 LSPILDEKDPIKENYFLEVSSPGLDRALKKDRDFVRYQGRDVDLKLYKPLNGCKQFEG-- 117 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L ++ + +N +I + + RL Sbjct: 118 -----ELVGLTEDNNIKIIVNGKEIEFNRKDVAIVRLA 150 >gi|116495059|ref|YP_806793.1| hypothetical protein LSEI_1577 [Lactobacillus casei ATCC 334] gi|191638562|ref|YP_001987728.1| hypothetical protein LCABL_17900 [Lactobacillus casei BL23] gi|239631346|ref|ZP_04674377.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066622|ref|YP_003788645.1| hypothetical protein LCAZH_1564 [Lactobacillus casei str. Zhang] gi|122263524|sp|Q038M1|RIMP_LACC3 RecName: Full=Ribosome maturation factor rimP gi|259585801|sp|B3WER9|RIMP_LACCB RecName: Full=Ribosome maturation factor rimP gi|116105209|gb|ABJ70351.1| hypothetical protein LSEI_1577 [Lactobacillus casei ATCC 334] gi|190712864|emb|CAQ66870.1| Putative uncharacterized protein [Lactobacillus casei BL23] gi|239525811|gb|EEQ64812.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439029|gb|ADK18795.1| conserved hypothetical protein [Lactobacillus casei str. Zhang] gi|327382600|gb|AEA54076.1| Ribosome maturation factor rimP [Lactobacillus casei LC2W] gi|327385798|gb|AEA57272.1| Ribosome maturation factor rimP [Lactobacillus casei BD-II] Length = 159 Score = 107 bits (267), Expect = 9e-22, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 72/161 (44%), Gaps = 8/161 (4%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 + ++++++P++++ F + ++ L++++++ G +TL +C +S+ Sbjct: 1 MSTQSVVETVTALVKPILDDHHFYLTDVEFVKEGGGWYLRVYIDK-TGGITLDECVMVSE 59 Query: 75 AISPIL--DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 A+S L + I Y LEVSSPG +RP+ ++D+ + G + + K+ Sbjct: 60 ALSEKLDAMDPDPIPQQYFLEVSSPGAERPLKHETDYEQAVGDYIHVSLFKKLDGKKVFE 119 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 G + L + + K I + SARL Sbjct: 120 GTLKELLPDQLTLTVKDKSRKFDQ----VIDRQLIASARLA 156 >gi|322806688|emb|CBZ04257.1| clustered with transcription termination protein NusA [Clostridium botulinum H04402 065] Length = 153 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 75/158 (47%), Gaps = 10/158 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 L ++ I+P+ E + + I ++ K L+I+++ + ++L CE++S+ Sbjct: 1 MSKHSLIENLKEQIEPIAEGLDYELYHIEFVKEGKENYLRIYIDS-ENGVSLEGCEKVSR 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S +LD + I+ Y LEVSSPGIDR + ++ G+ + + K+K G+ Sbjct: 60 AVSELLDDIDPIQESYYLEVSSPGIDRVLYTDKHLEKYKGYNIVLNLYSPIDKKKKYEGE 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ +E ++ E E + I + + L Sbjct: 120 LVDFNENEIDIKVE--------ENIVTIPREKISKTTL 149 >gi|169334800|ref|ZP_02861993.1| hypothetical protein ANASTE_01206 [Anaerofustis stercorihominis DSM 17244] gi|169257538|gb|EDS71504.1| hypothetical protein ANASTE_01206 [Anaerofustis stercorihominis DSM 17244] Length = 172 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 75/157 (47%), Gaps = 9/157 (5%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + + ++ + ++++ + I + N +L++++ER +G ++L + +++ +S Sbjct: 21 KVIDRVEALSEDILKDNGCELIDIEFKKEGNNKVLRLYIERIEGKVSLDEISTVNRLLSD 80 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LD E+ IE Y LEVSSPG++R + ++ DF+++ G V ++ K++ G + G Sbjct: 81 LLDEEDFIEEEYILEVSSPGVNRVIKKEKDFIKFKGSKVDVKLYKPLNGKKQFTGILEGY 140 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 ++ + + I + L Sbjct: 141 ENENVLIDLDGEH--------LVIPHKDISKVNLSFD 169 >gi|168184628|ref|ZP_02619292.1| conserved hypothetical protein [Clostridium botulinum Bf] gi|237795858|ref|YP_002863410.1| hypothetical protein CLJ_B2647 [Clostridium botulinum Ba4 str. 657] gi|259585740|sp|C3L0C0|RIMP_CLOB6 RecName: Full=Ribosome maturation factor rimP gi|182672272|gb|EDT84233.1| conserved hypothetical protein [Clostridium botulinum Bf] gi|229262492|gb|ACQ53525.1| conserved hypothetical protein [Clostridium botulinum Ba4 str. 657] Length = 153 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 78/158 (49%), Gaps = 10/158 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 L ++ I+P++E +++ I ++ K L+I+++ + ++L CE++S+ Sbjct: 1 MSKHSLIENLKKQIEPIVEGLNYELYHIEFVKEGKENYLRIYIDS-ENGVSLEGCEKVSR 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S +LD + I+ Y LEVSSPGIDR + ++ G+ + + S K+K G+ Sbjct: 60 AVSELLDDIDPIQESYYLEVSSPGIDRVLYTDKHLEKYKGYNIVLNLYSSIDKKKKYEGE 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ +E ++ E E + I + + L Sbjct: 120 LVDFNENEINIKVE--------ENIVTIPREKISKTTL 149 >gi|323485569|ref|ZP_08090914.1| hypothetical protein HMPREF9474_02665 [Clostridium symbiosum WAL-14163] gi|323692917|ref|ZP_08107140.1| ribosome maturation factor rimP [Clostridium symbiosum WAL-14673] gi|323401108|gb|EGA93461.1| hypothetical protein HMPREF9474_02665 [Clostridium symbiosum WAL-14163] gi|323503024|gb|EGB18863.1| ribosome maturation factor rimP [Clostridium symbiosum WAL-14673] Length = 155 Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 69/155 (44%), Gaps = 9/155 (5%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + + PV+EE F V + + E L+ ++++ +G + + DCE +S+ + L Sbjct: 8 EAKVEAWLLPVLEEHHFELVDVEYVREVGVWYLRAYIDK-EGGIAVDDCEIISRKLGEWL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D E+ I+ Y LEVSSPG+ RP+ ++ DF+R G V + +++ G + Sbjct: 67 DKEDFIDDSYILEVSSPGLGRPLKKEKDFVRSMGKDVEVRLYKPLNKQKEYTGALKSYDA 126 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + E + + + RL Sbjct: 127 DTVTITLED-------GNDLIFAKADIALIRLAFD 154 >gi|124267112|ref|YP_001021116.1| hypothetical protein Mpe_A1923 [Methylibium petroleiphilum PM1] gi|226732163|sp|A2SH42|RIMP_METPP RecName: Full=Ribosome maturation factor rimP gi|124259887|gb|ABM94881.1| conserved hypothetical protein [Methylibium petroleiphilum PM1] Length = 177 Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 73/158 (46%), Gaps = 18/158 (11%) Query: 26 SSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVER---------DDGNMTLRDCEELSQAI 76 + ++ + + V+ LL++F++R +T+ DCE++++ + Sbjct: 4 QAAVEKTVTGFGYELVECE--RGSQGLLRVFIDRVPGQVYDGGPGEFVTVEDCEKVTRQL 61 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 +L+VEN + RLEVSSPG+DRP+ + +D+ R+ G + + L ++K G + Sbjct: 62 QYVLEVEN--CDYSRLEVSSPGLDRPLKKSADYARFAGERIDITLKLPFQGRKKYQGVLA 119 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E E + + + + + ARL+ Sbjct: 120 ASGE-----AWELHFNDGKQDQVLGFTLEEVRDARLVP 152 >gi|313893703|ref|ZP_07827270.1| conserved hypothetical protein [Veillonella sp. oral taxon 158 str. F0412] gi|313441717|gb|EFR60142.1| conserved hypothetical protein [Veillonella sp. oral taxon 158 str. F0412] Length = 152 Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 75/157 (47%), Gaps = 9/157 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 + +SSV++ +I V + + E++ L++++++ G + L DC+ +S+ Sbjct: 1 MKREAVEEFVSSVVEGIIAGTDMELVDVDYVRERDWYLRVYLDKP-GGVDLDDCQLVSEK 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LD ++ I +Y LEVSSPG+DR + + D +R+NG V ++ ++ G + Sbjct: 60 LSAVLDEKDPITENYLLEVSSPGLDRVLKKDKDLIRYNGRDVDIQLFKPVNGSKQFTGAL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G ++T + ++ RL Sbjct: 120 QGFTDTTIDFTINGES--------MTFERSAIAQIRL 148 >gi|226949775|ref|YP_002804866.1| hypothetical protein CLM_2715 [Clostridium botulinum A2 str. Kyoto] gi|254801446|sp|C1FS63|RIMP_CLOBJ RecName: Full=Ribosome maturation factor rimP gi|226844311|gb|ACO86977.1| conserved hypothetical protein [Clostridium botulinum A2 str. Kyoto] Length = 153 Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 74/158 (46%), Gaps = 10/158 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 L ++ I+P+ E + + I ++ K L+I+++ + ++L CE++S+ Sbjct: 1 MSKHSLIENLKKQIEPIAEGLDYELYHIEFVKEGKENYLRIYIDS-ENGVSLEGCEKVSR 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 AIS +LD + I+ Y LEVSSPGIDR + ++ + + + K+K G+ Sbjct: 60 AISELLDDIDPIQESYYLEVSSPGIDRVLYTDKHLEKYKSYNIVLNLYSPIDKKKKYEGE 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ +E ++ E E + I + + L Sbjct: 120 LVDFNENEIDIKVE--------ENIVTIPREKISKTTL 149 >gi|332976701|gb|EGK13539.1| hypothetical protein HMPREF9373_1208 [Psychrobacter sp. 1501(2011)] Length = 166 Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 70/164 (42%), Gaps = 18/164 (10%) Query: 24 DISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVER------DDGNMTLRDCEELSQAI 76 ++ +I P + + L LL+I++E D +T+ +C ++ + Sbjct: 9 QLTDIIAPAVAACDVALWGVEFLPQGGRSLLRIYIESLPEDKAADKQVTIENCAAVTHQV 68 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG----DKQKLI 132 S +L+V + I G Y LEVSSPG+DRP + G + ++ + G ++K+ Sbjct: 69 SGVLEVHDPIAGEYVLEVSSPGLDRPFFAPEQMTDYVGQTLNLRLIQAVGAGSSKRRKVT 128 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 GK+ + + Q I+ D++ A LI D Sbjct: 129 GKLEQLGDKQLSI-------VTPEGEQFDIALDNIDKANLIYQD 165 >gi|283850805|ref|ZP_06368091.1| protein of unknown function DUF150 [Desulfovibrio sp. FW1012B] gi|283573728|gb|EFC21702.1| protein of unknown function DUF150 [Desulfovibrio sp. FW1012B] Length = 181 Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 68/170 (40%), Gaps = 13/170 (7%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLL-QIFVE--------RDDGNMTLRDCEE 71 + I +I P + M + L + L +++++ + +T+ +C Sbjct: 7 VPDKIRELISPFLASMGLVVWGVELAASGHRQLVRLYLDLAADTPRTPERRGVTIDECAR 66 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 S+ ++ +L++E++ Y LEVSSPG+ R + + G V+ ++ + +++ Sbjct: 67 ASRHLATLLEMEDLFHDPYVLEVSSPGLGRRFFEPAQLPAYVGQVIEAKLTVPRDGRKRF 126 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRA 181 G + + + E ++ F+ RLI + + Sbjct: 127 KGVLTAVEGERVTILVDAAPEAF----PLSFDFEEAEKVRLIHAFDAISE 172 >gi|237742965|ref|ZP_04573446.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13] gi|229430613|gb|EEO40825.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13] Length = 156 Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 77/155 (49%), Gaps = 11/155 (7%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I+ ++ P IEEM+ V + +++ ++IF+E +G++ + DC +LS I Sbjct: 7 IVEKITKIVNPFIEEMNLSLVDVEYVQDGGYWYIRIFIENLNGDLNIEDCSKLSSKIED- 65 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 VE +IE + LEVSSPG++RP+ + D++R+ G + + K++ I + Sbjct: 66 -KVEGLIEHKFFLEVSSPGLERPLKKIEDYVRFKGEKITLHLKHKLNYKKQFKAVIKEVN 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +K+ +I I F+ + A ++ Sbjct: 125 GDNIIFLIDKK--------EIEIKFNEIRKANILF 151 >gi|313673262|ref|YP_004051373.1| hypothetical protein Calni_1302 [Calditerrivibrio nitroreducens DSM 19672] gi|312940018|gb|ADR19210.1| protein of unknown function DUF150 [Calditerrivibrio nitroreducens DSM 19672] Length = 157 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 70/156 (44%), Gaps = 12/156 (7%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + + + + + + E L+IF+++++ +TL DC S+ IS Sbjct: 8 IVERVKEYSEKIAPKFGVEIFDVKFVREPSGYTLRIFLDKEN--LTLEDCANFSKEISKW 65 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI-VLSSGDKQKLIGKIMGT 138 LD E++I Y LEVSSPG++RP+ D+ ++ G E+ S ++ G I G Sbjct: 66 LDKEDLIPHKYNLEVSSPGLNRPLRNIDDYKKYIGRKCKVELFKKDSSGRKNYTGYIKGV 125 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ +K +I++S+ + L Sbjct: 126 DGEVILIDLKKE--------EISLSYSDIKKGNLEF 153 >gi|309389229|gb|ADO77109.1| protein of unknown function DUF150 [Halanaerobium praevalens DSM 2228] Length = 155 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 82/154 (53%), Gaps = 9/154 (5%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 +A ++ + P+ + + + + L+ + +L+IF+E +G +T+ +CE++S+++S Sbjct: 6 KVAETVTDFVLPIAQSENLNLIDVEFLKEGSDWILRIFLENKNGELTIEECEKVSRSLSM 65 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 ILD E+ I+ Y LEVSSPG++RP+ + DF R+ G ++A + +++ +G + Sbjct: 66 ILDEEDPIDKSYILEVSSPGLERPLKTEEDFERFKGELIAVKTFKKIEGQKEFVGILKDF 125 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + LE + + I + + A L Sbjct: 126 NVDKITLEIDNNK--------LEIDYSLVARANL 151 >gi|289449993|ref|YP_003474584.1| hypothetical protein HMPREF0868_0246 [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184540|gb|ADC90965.1| conserved hypothetical protein [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 155 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 2/145 (1%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQ 74 +A S+ +I +M + V + ++E L+ ++++ G + L DC E+S+ Sbjct: 1 MAKSKIAAQAESLCAKLINDMGYDLVDVEFVKEGPDRFLRFYIDKR-GGVGLDDCTEVSR 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 +I P++D I+ Y LEVSSPG+DRP+ SD LR G V + + +K +G+ Sbjct: 60 SIDPLIDENLTIDQAYYLEVSSPGLDRPLKTDSDLLRHQGEKVEVTLYQARDGHKKFVGE 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQ 159 I+ + L E G + Sbjct: 120 IVAVDDGVLKLAVENMGVLSFTAAE 144 >gi|126698904|ref|YP_001087801.1| hypothetical protein CD1306 [Clostridium difficile 630] gi|254974852|ref|ZP_05271324.1| hypothetical protein CdifQC_06040 [Clostridium difficile QCD-66c26] gi|255092239|ref|ZP_05321717.1| hypothetical protein CdifC_06222 [Clostridium difficile CIP 107932] gi|255100325|ref|ZP_05329302.1| hypothetical protein CdifQCD-6_05917 [Clostridium difficile QCD-63q42] gi|255306263|ref|ZP_05350435.1| hypothetical protein CdifA_06705 [Clostridium difficile ATCC 43255] gi|255313979|ref|ZP_05355562.1| hypothetical protein CdifQCD-7_06500 [Clostridium difficile QCD-76w55] gi|255516659|ref|ZP_05384335.1| hypothetical protein CdifQCD-_06064 [Clostridium difficile QCD-97b34] gi|255649758|ref|ZP_05396660.1| hypothetical protein CdifQCD_06184 [Clostridium difficile QCD-37x79] gi|260682914|ref|YP_003214199.1| hypothetical protein CD196_1169 [Clostridium difficile CD196] gi|260686512|ref|YP_003217645.1| hypothetical protein CDR20291_1147 [Clostridium difficile R20291] gi|306519863|ref|ZP_07406210.1| hypothetical protein CdifQ_07217 [Clostridium difficile QCD-32g58] gi|123363595|sp|Q18BH3|RIMP_CLOD6 RecName: Full=Ribosome maturation factor rimP gi|115250341|emb|CAJ68163.1| conserved hypothetical protein [Clostridium difficile] gi|260209077|emb|CBA62221.1| conserved hypothetical protein [Clostridium difficile CD196] gi|260212528|emb|CBE03478.1| conserved hypothetical protein [Clostridium difficile R20291] Length = 153 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 78/158 (49%), Gaps = 9/158 (5%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQA 75 L I ++ + +E F V + ++E L++++++++ ++L +CE +S+ Sbjct: 1 MKKNLEATIEEIVTKITDEHGFEMVDVEYVKEAGEYYLRVYIDKEE-GISLNECELVSRE 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +SPILD ++ I+ +Y LEVSSPG+DR + + DF+R+ G V ++ ++ G Sbjct: 60 LSPILDEKDPIKENYFLEVSSPGLDRALKKDRDFVRYQGRDVDLKLYKPLNGCKQFEG-- 117 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L ++ + N ++ + + RL Sbjct: 118 -----ELVGLTEDNNIKIIANGKEMEFNRKDVAIVRLA 150 >gi|16124301|ref|NP_418865.1| hypothetical protein CC_0045 [Caulobacter crescentus CB15] gi|13421139|gb|AAK22033.1| conserved hypothetical protein [Caulobacter crescentus CB15] Length = 160 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 11/144 (7%) Query: 51 LLLQIFVERD------DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMV 104 LQI E G+M + DC +LS+A+S +LD + I G Y LEVSSPGIDRP+ Sbjct: 7 RRLQIMAEHPLLEDGSGGDMNVEDCAKLSRAVSEVLDAADPIAGEYTLEVSSPGIDRPLT 66 Query: 105 RKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISF 164 R DF + G E+ + +++ G++ G + L E +++ + F Sbjct: 67 RLKDFDDYAGLEARIELDRVAEGRKRFKGELAGVEDDQVGLNIEGE-----DDVTVYFPF 121 Query: 165 DSLLSARLIVTDELLRASLNNYGS 188 ++ A+L++TD L+ + Sbjct: 122 AWVIDAKLVMTDALMERGAKQRAA 145 >gi|260589531|ref|ZP_05855444.1| putative cytoplasmic protein [Blautia hansenii DSM 20583] gi|260540099|gb|EEX20668.1| putative cytoplasmic protein [Blautia hansenii DSM 20583] Length = 154 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 73/155 (47%), Gaps = 10/155 (6%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++++P++ E F V + ++E + L+ ++++ + +T+ DCE +S+ S L Sbjct: 8 EQKAEALLEPIVAEHDFELVDVEYVKEGSNFYLRAYIDKPE-GITVDDCEVVSRTFSQKL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D E+ I+ Y +EVSSPG+ RP+ ++ D+ R G + + +++ G + +E Sbjct: 67 DEEDFIDEAYIMEVSSPGLGRPLKKEKDYKRSMGKELEIRTYRAINKEKEFYGILKEYNE 126 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 ++ E ++ + RL Sbjct: 127 RSVTIDCEG--------TEMTFQKSDIALIRLAFD 153 >gi|331082959|ref|ZP_08332079.1| ribosome maturation factor rimP [Lachnospiraceae bacterium 6_1_63FAA] gi|330399954|gb|EGG79612.1| ribosome maturation factor rimP [Lachnospiraceae bacterium 6_1_63FAA] Length = 154 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 75/155 (48%), Gaps = 10/155 (6%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPIL 80 +++P++ E +F V + ++E + L+ ++++ + +T+ DCE +S+A S L Sbjct: 8 EQKAEVLLEPIVAEHNFELVDVEYVKEGSNFYLRAYIDKPE-GITVDDCEIVSRAFSQKL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D E+ I+ Y +EVSSPG+ RP+ ++ D+ R G + + +++ G + +E Sbjct: 67 DEEDFIDEAYIMEVSSPGLGRPLKKEKDYKRSMGKELEIRTYRAINKEKEFYGILKEYNE 126 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + ++ E ++ + RL Sbjct: 127 SSVTIDCEG--------TEMTFQKSDIALIRLAFD 153 >gi|291562552|emb|CBL41368.1| Uncharacterized protein conserved in bacteria [butyrate-producing bacterium SS3/4] Length = 155 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 71/155 (45%), Gaps = 9/155 (5%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + P++EE +F V + ++E L+ ++++ +G T+ DCE +S+ +S L Sbjct: 8 ESRVEKFLIPIMEENNFELVDVEYVKEAGTWYLRAYIDK-EGGFTVDDCEMVSRRLSDWL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D E+ I+ Y LEVSSPG+ RP+ ++ DF R G V ++ + ++ G + Sbjct: 67 DKEDFIDDSYILEVSSPGLGRPLKKEKDFKRSLGEAVDIKLYRAIERQKDFSGILTAYDA 126 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + E E + + RL Sbjct: 127 DTVTIRYEDGSEN-------TFNRKDIALIRLAFD 154 >gi|254519188|ref|ZP_05131244.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA] gi|226912937|gb|EEH98138.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA] Length = 152 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQ 74 L I +++P+ EE+++ I ++E L+I++++ DG + L DCE LS+ Sbjct: 1 MKVDALLETIDQLVRPIAEELNYEIYHIEYVKENGEYYLRIYIDK-DGGIALSDCEALSR 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 +S ++D ++ I+ Y LEVSSPG++R + F + G + S ++ + G Sbjct: 60 RVSDVMDEKDPIKEAYFLEVSSPGLNRTLFTDDHFKKQIGKEIMVRFTKSLNGRKNIKGI 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + S+ +E + I I D + SA L Sbjct: 120 LKEVSDDSVIVETDD---------LITIPKDKIKSANL 148 >gi|116629467|ref|YP_814639.1| hypothetical protein LGAS_0810 [Lactobacillus gasseri ATCC 33323] gi|116095049|gb|ABJ60201.1| hypothetical protein LGAS_0810 [Lactobacillus gasseri ATCC 33323] Length = 172 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 69/156 (44%), Gaps = 7/156 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQAIS 77 + ++ V+ P+ E V + ++EK L+I+V+R G + + + LS+ +S Sbjct: 16 TKVTELVADVVTPLAEARGDELVDVEYVKEKKQYYLRIYVDRRPGGIDIEEIANLSELVS 75 Query: 78 PILDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + Y LE+SSPG++RP+ + D+ R G + + ++ G + Sbjct: 76 EKLDELDPDPFPEPYILELSSPGLERPIKNEKDWERAKGSYIHVSLYQKIDGEKTYEGTL 135 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 ++ LE + +I I + S+R Sbjct: 136 KDLNQNQIVLEV----KIKTRRKEITIPRKVIASSR 167 >gi|71908072|ref|YP_285659.1| hypothetical protein Daro_2454 [Dechloromonas aromatica RCB] gi|91208406|sp|Q47D92|RIMP_DECAR RecName: Full=Ribosome maturation factor rimP gi|71847693|gb|AAZ47189.1| Protein of unknown function DUF150 [Dechloromonas aromatica RCB] Length = 146 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 80/156 (51%), Gaps = 13/156 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD--DGNMTLRDCEELSQAISPILD 81 D++++++ + + + V + + + +++F++ + + + DC ++S ++ + + Sbjct: 2 DLNTLLETTVVGLGYELVDVEMSP-RGRTIRVFIDAPAKETGIDVEDCAKVSNQLTRVFE 60 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VEN RLE+SSPG+DR + + +DF R++G + ++ + G ++ G+++G + Sbjct: 61 VENF--DFDRLEISSPGLDRVVKKAADFERFSGQEIQIKVRIPQGGRRNFQGELLGLKDG 118 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 L K + + F ++ ARL+ + Sbjct: 119 KVGLRLAKDD--------VELEFTNIEKARLVPRFD 146 >gi|167766536|ref|ZP_02438589.1| hypothetical protein CLOSS21_01042 [Clostridium sp. SS2/1] gi|167711659|gb|EDS22238.1| hypothetical protein CLOSS21_01042 [Clostridium sp. SS2/1] Length = 154 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 77/157 (49%), Gaps = 10/157 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + ++ P+IE +F V + ++ N L+++ ++ +G + + DC +S+++ Sbjct: 6 DIETKTEELVLPIIEANNFELVDVEYVKEGANWYLRVYADK-EGGIAIDDCVLISRSLEE 64 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LD E+ IE Y LEVSSPG+ RP+ ++ D++R G + ++ + +++ G + Sbjct: 65 KLDAEDFIEDAYILEVSSPGLGRPLKKEKDYVRSVGKSIDIKLYKAIDKQKEFTGILKEN 124 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 E L E + I S+ SARL + Sbjct: 125 MEDQIVLTIEDQD--------ITFEKKSIASARLSLD 153 >gi|226951827|ref|ZP_03822291.1| YhbC family protein [Acinetobacter sp. ATCC 27244] gi|226837367|gb|EEH69750.1| YhbC family protein [Acinetobacter sp. ATCC 27244] Length = 174 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 40/179 (22%), Positives = 73/179 (40%), Gaps = 23/179 (12%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVER--------------- 59 + + +I P + I L K LL+I++++ Sbjct: 1 MKLSNKSQALFDLIAPAVAACDVDLWGIEFLPQGKRSLLRIYIDKAIDENAEPVLNEDGE 60 Query: 60 --DDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + + ++DC ++Q + +LDV + I G Y LEVSSPG DRP + S + G V Sbjct: 61 VEEGRGIGVQDCVLVTQQVGAMLDVHDPISGEYALEVSSPGWDRPFFQLSQMSGYIGQQV 120 Query: 118 ACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 A ++ + +++K K++ ++ E G + I ++ A LI D Sbjct: 121 ALRLIAAVENRRKFQAKLLSVDLENEMIQVEVEG-----GQVLEIDSHNIDKANLIYQD 174 >gi|206889666|ref|YP_002248540.1| YlxS [Thermodesulfovibrio yellowstonii DSM 11347] gi|259645127|sp|B5YJX5|RIMP_THEYD RecName: Full=Ribosome maturation factor rimP gi|206741604|gb|ACI20661.1| YlxS [Thermodesulfovibrio yellowstonii DSM 11347] Length = 164 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 53/161 (32%), Positives = 80/161 (49%), Gaps = 6/161 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 L I+ V E+ V + K L L+IF+++ +G +T++DCE S+AI Sbjct: 4 KELKDKITDYANIVGEQEGVEIVNVEIYPGGKGLTLRIFIDK-EGGVTIKDCENFSRAIE 62 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ILDVE+ I+ Y LEVSSPGIDRP+ K DFLR G V D IGKI+ Sbjct: 63 AILDVEDPIKSSYTLEVSSPGIDRPLKNKKDFLRNIGRDVKITTKEKIADNTFFIGKIVD 122 Query: 138 TSETGFFLEKEKRGEKDMNELQIA----ISFDSLLSARLIV 174 + +E ++ K + I F+ ++ A++ + Sbjct: 123 VGDDWVRIEIQETKIKGSKKKGKTELLFIPFNKIIKAQVYL 163 >gi|78222793|ref|YP_384540.1| hypothetical protein Gmet_1583 [Geobacter metallireducens GS-15] gi|91208011|sp|Q39VA9|RIMP_GEOMG RecName: Full=Ribosome maturation factor rimP gi|78194048|gb|ABB31815.1| protein of unknown function DUF150 [Geobacter metallireducens GS-15] Length = 159 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 14/165 (8%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 + ++++ + ++ V I ++++L++FV++ G +TL DC +S+ Sbjct: 1 MAKDEVVDRVTALAESLLSSQEMELVDIEYKREGRHMVLRLFVDKA-GGITLDDCALVSR 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD-----KQ 129 S ILDVE+ I +Y LEVSSPG++RP+ R+SD+ R+ G +V D ++ Sbjct: 60 EFSEILDVEDFISENYTLEVSSPGLNRPLKRESDYERYRGRLVKVRTYDVVEDEAGNRRK 119 Query: 130 KLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +G + G + L K I + A L Sbjct: 120 TFLGDLEGLAGGVVTL-------KLREGQMARIPLAKIAKANLEF 157 >gi|150390439|ref|YP_001320488.1| hypothetical protein Amet_2677 [Alkaliphilus metalliredigens QYMF] gi|259585692|sp|A6TRL1|RIMP_ALKMQ RecName: Full=Ribosome maturation factor rimP gi|149950301|gb|ABR48829.1| protein of unknown function DUF150 [Alkaliphilus metalliredigens QYMF] Length = 152 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 40/144 (27%), Positives = 83/144 (57%), Gaps = 2/144 (1%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISP 78 + +I P++E F V I +E + L++++++ G +TL DC+++S+ +S Sbjct: 3 KIESITEDLITPIVEAEQFELVDIEFKKEGPHKYLRVYIDKP-GGITLDDCQKVSEGLSK 61 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LD + I +Y LEVSSPG+DRP+ R+ DFL++ G ++ ++ + ++ + G+++G Sbjct: 62 KLDEADPIVENYFLEVSSPGLDRPLKREVDFLKFKGEMIELKLYEAIDGQKTIEGELVGL 121 Query: 139 SETGFFLEKEKRGEKDMNELQIAI 162 + ++ + E +M ++AI Sbjct: 122 IDDKIVIKISETEEVEMPREKVAI 145 >gi|297180948|gb|ADI17151.1| uncharacterized protein conserved in bacteria [uncultured gamma proteobacterium HF0070_08D07] Length = 152 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 73/155 (47%), Gaps = 11/155 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE--KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 +I S++ P IE + R + L NL + ++++ +D +++ DC +S+ +S I Sbjct: 5 KENIESLVAPTIEALGCRIWGVELQGGLKNNLKVVVYIDSED-GISVDDCATVSEHVSDI 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD+E ++ Y LEVSSPG+DR + ++ F G + + ++KL G ++ Sbjct: 64 LDMEELVPSPYVLEVSSPGLDRILFKEQHFKESLGLKIDVRLNRPFEGRKKLTGVLLDYG 123 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + L + I D++ RL+ Sbjct: 124 DLELILRDKMGVRN--------IPVDAIRKVRLVP 150 >gi|293374144|ref|ZP_06620478.1| SP14.3 protein [Turicibacter sanguinis PC909] gi|325837436|ref|ZP_08166418.1| hypothetical protein HMPREF9402_1291 [Turicibacter sp. HGF1] gi|292647247|gb|EFF65223.1| SP14.3 protein [Turicibacter sanguinis PC909] gi|325490968|gb|EGC93266.1| hypothetical protein HMPREF9402_1291 [Turicibacter sp. HGF1] Length = 155 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 68/156 (43%), Gaps = 6/156 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAIS 77 + +++P+ E + V + ++E L+++V+ + + + C ++++A+S Sbjct: 2 SNIVAKTEELVKPICEANNVELVDVEYVKEGQNFFLRVYVDTPE-GIDIDQCADVAEALS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + IE Y LEVSSPG +RP+ K G + + + +++ G ++ Sbjct: 61 EKLDQHDYIEDEYMLEVSSPGAERPLKTKEAVAESIGAYINVKTYKAIDGQKEFEGHLIK 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 E LE + + I +D RL Sbjct: 121 FEEDILTLEV----LVKTRKKVVEIPYDKAAKVRLA 152 >gi|313115475|ref|ZP_07800940.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310622185|gb|EFQ05675.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 161 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 70/160 (43%), Gaps = 11/160 (6%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPIL 80 A + ++++P +E M R + +E L++ +++ DG M C ++S A+ PIL Sbjct: 10 AQRVEALVRPTVEGMGLRLWDVVFEKEGPDWYLRVLIDK-DGTMDTDTCADVSHALDPIL 68 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS-GDKQKLIGKIMGTS 139 D + I+ Y LEV SPG+ R + R + G + +++ + ++ G + G Sbjct: 69 DEADPIDQSYYLEVGSPGLGRKLTRPEHYEALKGQKIRVKLIRPNADGVREFSGILTGRE 128 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELL 179 + + + + ++ S L ++L Sbjct: 129 GSTVTVNTDAGA--------VTFEVNAASSVNLCDDEDLF 160 >gi|310828068|ref|YP_003960425.1| hypothetical protein ELI_2480 [Eubacterium limosum KIST612] gi|308739802|gb|ADO37462.1| Uncharacterized protein conserved in bacteria [Eubacterium limosum KIST612] Length = 154 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 68/147 (46%), Gaps = 2/147 (1%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + +I PV+E + V ++ K+ +L +++ + + L DCE +S+ Sbjct: 1 MKKQSKESMLEELIAPVVEAEGYECVDVTFEKAGKDWVLTTYIDGPN-GIGLDDCEVVSR 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 +S ++D ++ IE Y LEVSSPGIDRP+ ++ DF R + ++L G Sbjct: 60 KLSDLMDEKDPIEQSYLLEVSSPGIDRPLKKEKDFARNMDKRIVVSFYAPVNGSKQLSGI 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIA 161 + G L+ + ++ ++ Sbjct: 120 LKGYKGVTLTLQLDSEEMMELEMSAVS 146 >gi|294649081|ref|ZP_06726524.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC 19194] gi|292825027|gb|EFF83787.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC 19194] Length = 174 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 40/179 (22%), Positives = 73/179 (40%), Gaps = 23/179 (12%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVER--------------- 59 + + +I P + I L K LL+I++++ Sbjct: 1 MKLSNKSQALFDLIAPAVAACDVDLWGIEFLPQGKRSLLRIYIDKAIDENAEPVLNEDGE 60 Query: 60 --DDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + + ++DC ++Q + +LDV + I G Y LEVSSPG DRP + S + G V Sbjct: 61 VEEGRGIGVQDCVLVTQQVGAMLDVHDPISGEYALEVSSPGWDRPFFQLSQMSGYIGQQV 120 Query: 118 ACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 A ++ + +++K K++ ++ E G + I ++ A LI D Sbjct: 121 ALRLIAAVENRRKFQAKLLSVDLENEMIQVEVEGA-----QVLEIDSHNIDKANLIYQD 174 >gi|154485018|ref|ZP_02027466.1| hypothetical protein EUBVEN_02736 [Eubacterium ventriosum ATCC 27560] gi|149733971|gb|EDM50090.1| hypothetical protein EUBVEN_02736 [Eubacterium ventriosum ATCC 27560] Length = 147 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 38/146 (26%), Positives = 79/146 (54%), Gaps = 2/146 (1%) Query: 24 DISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 ++I P+++E F V + ++ N L+ +V++ +G +T+ D E +S+ +S LD Sbjct: 2 KTEALITPIVDEKGFELVDVEYVKEGSNWYLRAYVDK-EGGITINDLESVSRILSDKLDE 60 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ I Y LEVSSPG+ RP+ + DF R G+ + + + +++L+G + + Sbjct: 61 EDFISDAYILEVSSPGLGRPLKKDKDFDRNMGNEIEVHLYRAVDRQKQLVGLLKAYNADT 120 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLL 168 +E E E D++ + +++ ++ Sbjct: 121 ITIENEDGSETDIDRVNVSLVRPTID 146 >gi|293610133|ref|ZP_06692434.1| hypothetical protein HMPREF0013_02285 [Acinetobacter sp. SH024] gi|292827365|gb|EFF85729.1| hypothetical protein HMPREF0013_02285 [Acinetobacter sp. SH024] gi|325124306|gb|ADY83829.1| hypothetical protein BDGL_003243 [Acinetobacter calcoaceticus PHEA-2] Length = 174 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 73/181 (40%), Gaps = 27/181 (14%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERD-------------- 60 + + +I P +E I L K LL+I++++ Sbjct: 1 MKLSNKSQALHDLIVPAVEACGVDLWGIEFLPQGKRSLLRIYIDKAVSEDAEPVINEDGE 60 Query: 61 ---DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + ++DC ++Q + +LDV + I G Y LEVSSPG DRP + + G + Sbjct: 61 VELGRGIGVQDCVRVTQQVGAMLDVHDPISGEYSLEVSSPGWDRPFFQLEQLQGYIGQQI 120 Query: 118 ACEIVLSSGDKQKLIGKIMGTS--ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 A ++ + +++K K++ +E + + + I +++ A LI Sbjct: 121 ALRLIAAVENRRKFQAKLIAVDLENEEIQVEVDGK-------HVLVIDSNNIDKANLIYQ 173 Query: 176 D 176 D Sbjct: 174 D 174 >gi|283797336|ref|ZP_06346489.1| hypothetical protein CLOM621_07330 [Clostridium sp. M62/1] gi|291075008|gb|EFE12372.1| hypothetical protein CLOM621_07330 [Clostridium sp. M62/1] gi|295090488|emb|CBK76595.1| Uncharacterized protein conserved in bacteria [Clostridium cf. saccharolyticum K10] Length = 155 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 70/155 (45%), Gaps = 9/155 (5%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + + P++E+ F V + + E L+ ++++ +G +T+ DCE +S+ + L Sbjct: 8 ESKVEAWLLPLLEKYKFELVDVEYVREAGLWYLRAYIDK-EGGITVDDCEVVSRELGDWL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D E+ I Y LEVSSPG+ RP+ ++ DF R G V + +++ G + Sbjct: 67 DKEDFIADSYILEVSSPGLGRPLKKEKDFARSLGKAVEVRLYRPINRQKEFTGALKAYDA 126 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 L E E ++ + + RL Sbjct: 127 DTVTLSMED-------ESELVLEKSDIALIRLAFD 154 >gi|160943265|ref|ZP_02090501.1| hypothetical protein FAEPRAM212_00751 [Faecalibacterium prausnitzii M21/2] gi|158445504|gb|EDP22507.1| hypothetical protein FAEPRAM212_00751 [Faecalibacterium prausnitzii M21/2] gi|295105167|emb|CBL02711.1| Uncharacterized protein conserved in bacteria [Faecalibacterium prausnitzii SL3/3] Length = 161 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 72/160 (45%), Gaps = 11/160 (6%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPIL 80 A + ++++P +E M R + +E L+I ++R DG M C E+S A+ PIL Sbjct: 10 AQRVEALVRPTVEGMGLRLWDVVFEKEGPDWYLRILIDR-DGTMDTDTCAEVSHALDPIL 68 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS-GDKQKLIGKIMGTS 139 D + I+ Y LEV SPG+ R + R + G V +++ + ++L G + G Sbjct: 69 DEADPIDQSYYLEVGSPGLGRKLTRPEHYEALKGQKVRAKLIRPNADGVRELSGILTGRE 128 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELL 179 + LE E + ++ +L ++L Sbjct: 129 GSTVTLETEN--------GPVTFEVNAASGVQLCDDEDLF 160 >gi|50083627|ref|YP_045137.1| hypothetical protein ACIAD0367 [Acinetobacter sp. ADP1] gi|51316595|sp|Q6FF42|RIMP_ACIAD RecName: Full=Ribosome maturation factor rimP gi|49529603|emb|CAG67315.1| conserved hypothetical protein [Acinetobacter sp. ADP1] Length = 174 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 40/179 (22%), Positives = 72/179 (40%), Gaps = 23/179 (12%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERD-------------- 60 + +I P ++ I + K LL+IF+++ Sbjct: 1 MKLSNKTQALHDLIAPAVQACDVNLWGIEFIPQGKRSLLRIFIDKPVDETAEPVLNEDGE 60 Query: 61 ---DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + ++DC ++Q + ILDV + I G Y LEVSSPG DRP + + G V Sbjct: 61 TELGRGIGVQDCVRVTQQVGAILDVHDPISGEYALEVSSPGWDRPFFQLEQMSAYIGQQV 120 Query: 118 ACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 A ++ + +++K K++ ++ E G+ + I ++ A LI D Sbjct: 121 ALRLISAVENRRKFQAKLLLVDLENEMIQVEVDGK-----HVLEIDSHNIDKANLIYQD 174 >gi|291613947|ref|YP_003524104.1| hypothetical protein Slit_1480 [Sideroxydans lithotrophicus ES-1] gi|291584059|gb|ADE11717.1| protein of unknown function DUF150 [Sideroxydans lithotrophicus ES-1] Length = 141 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 76/151 (50%), Gaps = 13/151 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 D++ +++ + M + V + + L+++F+++ D +++ DCE +S + + VE Sbjct: 2 DVAKLVETTLAGMGYELVDLEVSGRG--LMRVFMDKPD-GISVEDCERVSNQLVRLFTVE 58 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + + RLEVSSPG+DR + ++SDF+R+ G ++ + ++ G I + Sbjct: 59 GV--EYERLEVSSPGLDRVLKKESDFVRFAGQKAQIKVRVPLAGRKNFAGIIGEVKDGVV 116 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L+ + +AI ++ ARL+ Sbjct: 117 QLDVDGSL--------VAIELSNMDKARLVP 139 >gi|262280757|ref|ZP_06058540.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] gi|262257657|gb|EEY76392.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] Length = 174 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 38/179 (21%), Positives = 74/179 (41%), Gaps = 23/179 (12%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVER--------------- 59 + + +I P ++ I L K LL+I++++ Sbjct: 1 MKLSNKSQALHDLIVPAVQACGVDLWGIEFLPQGKRSLLRIYIDKAVSEDAEPVLDEDGE 60 Query: 60 --DDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 + ++DC ++Q + +LDV + I G Y LEVSSPG DRP + + G + Sbjct: 61 VEQGRGIGVQDCVRVTQQVGAMLDVHDPISGEYSLEVSSPGWDRPFFQLEQLQGYIGQQI 120 Query: 118 ACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 A ++ + +++K K++ ++ E G+ + I +++ A LI D Sbjct: 121 ALRLIAAVENRRKFQAKLIAVDLENEEIQVEVDGQ-----HVLEIDSNNIDKANLIYQD 174 >gi|332704825|ref|ZP_08424913.1| Ribosome maturation factor rimP [Desulfovibrio africanus str. Walvis Bay] gi|332554974|gb|EGJ52018.1| Ribosome maturation factor rimP [Desulfovibrio africanus str. Walvis Bay] Length = 170 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 10/159 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + I+ + VIE M + ++ + + + ++VE +++ E S+ I Sbjct: 5 TEITNRIAQAARTVIEPMGLSLWGVEIVLDGRGQTVLVYVESP-TGVSVEQLAEASRNIG 63 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LDVE+ I G YRLE+SSPG +R + G V + GD++K G + Sbjct: 64 LVLDVEDFIPGTYRLELSSPGFERSFFSTEQMRDYMGEKVEIRTSVPLGDRRKFRGILKE 123 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 E +E E + + ++ + ARLIV D Sbjct: 124 VREDSIAVEAEGQL--------FNLRWEDVKKARLIVED 154 >gi|326791501|ref|YP_004309322.1| hypothetical protein Clole_2418 [Clostridium lentocellum DSM 5427] gi|326542265|gb|ADZ84124.1| protein of unknown function DUF150 [Clostridium lentocellum DSM 5427] Length = 153 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 83/161 (51%), Gaps = 10/161 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQ 74 L I + P++ E+ + V + ++E L+I++++ +G +T++DC+ S+ Sbjct: 1 MNKKELIEVIEGYLDPILAELHYELVDVEYVKEGPNYYLRIYIDK-EGGITIQDCQLTSR 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 AI +LD ++ I+ Y LEVSSPG+DR + + +F R+ G +V ++ + ++ G+ Sbjct: 60 AIEKVLDEKDPIKDPYVLEVSSPGLDRVLKKDKEFERFKGRLVDVKLYEAINKQKHFTGE 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 ++ +E +++ E + ++ RL +T Sbjct: 120 LIKKTEDKLYIDDEG--------TNLEFEMKNVAVVRLAIT 152 >gi|229824766|ref|ZP_04450835.1| hypothetical protein GCWU000182_00115 [Abiotrophia defectiva ATCC 49176] gi|229791095|gb|EEP27209.1| hypothetical protein GCWU000182_00115 [Abiotrophia defectiva ATCC 49176] Length = 155 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 38/142 (26%), Positives = 72/142 (50%), Gaps = 2/142 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++I P+I + ++ V + + N L+ +V++ +G ++ DCE++S+ S +L Sbjct: 8 EKKAEALILPIINKNNYELVDVEFVREGSNWFLRAYVDK-EGGFSVNDCEKVSREFSDLL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D E+ IE Y LE+SSPG+ RP+ + DF R G V ++ + ++++ G + Sbjct: 67 DKEDFIEESYILEISSPGLGRPLKKDKDFERSIGEEVEVKLYKAFEEQKEFSGTLEAYDA 126 Query: 141 TGFFLEKEKRGEKDMNELQIAI 162 + E EK IA+ Sbjct: 127 QTVTIGFEDNTEKTFERKNIAL 148 >gi|238854743|ref|ZP_04645073.1| conserved hypothetical protein [Lactobacillus jensenii 269-3] gi|260663975|ref|ZP_05864828.1| conserved hypothetical protein [Lactobacillus jensenii SJ-7A-US] gi|282932866|ref|ZP_06338263.1| conserved hypothetical protein [Lactobacillus jensenii 208-1] gi|313472266|ref|ZP_07812758.1| SP14.3 protein [Lactobacillus jensenii 1153] gi|238832533|gb|EEQ24840.1| conserved hypothetical protein [Lactobacillus jensenii 269-3] gi|239529662|gb|EEQ68663.1| SP14.3 protein [Lactobacillus jensenii 1153] gi|260561861|gb|EEX27830.1| conserved hypothetical protein [Lactobacillus jensenii SJ-7A-US] gi|281302901|gb|EFA95106.1| conserved hypothetical protein [Lactobacillus jensenii 208-1] Length = 158 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 69/156 (44%), Gaps = 7/156 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + +++++ P+ E+ V + ++E L+I+V+R + + + + LS+ +S Sbjct: 2 TKIVDLVTNLVSPIAEKRGDELVDVEYVKEQNQYYLRIYVDRGESGIDIEEIAALSEMVS 61 Query: 78 PILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + Y LE+SSPG++RP+ + D+ + + ++ G + Sbjct: 62 EELDKLNPDPFTEPYMLELSSPGLERPIKNERDWEKAVNKYIHVACYQKIDGQKAFDGTL 121 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 + + L+ + ++ I ++ +AR Sbjct: 122 LSKDDDKITLKI----KIKTRTKELEIPVGAIANAR 153 >gi|256846937|ref|ZP_05552391.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2] gi|294784278|ref|ZP_06749573.1| conserved hypothetical protein [Fusobacterium sp. 3_1_27] gi|256717735|gb|EEU31294.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2] gi|294488144|gb|EFG35495.1| conserved hypothetical protein [Fusobacterium sp. 3_1_27] Length = 156 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 78/155 (50%), Gaps = 11/155 (7%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I+ ++ P IEEM+ V + +++ ++IF+E +G++ + DC +LS I Sbjct: 7 IVEKITKIVNPFIEEMNLSLVDVEYVQDGGYWYIRIFIENLNGDLNIEDCSKLSSKIED- 65 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 VE +IE + LEVSSPG++RP+ + D++R+ G + + DK++ I + Sbjct: 66 -KVEGLIEHKFFLEVSSPGLERPLKKIEDYVRFTGEKITLHLKHKLDDKKQFKAIIKEVN 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +K+ +I I F+ + A ++ Sbjct: 125 GDNIIFLIDKK--------EIEIKFNEIRKANILF 151 >gi|148651971|ref|YP_001279064.1| hypothetical protein PsycPRwf_0155 [Psychrobacter sp. PRwf-1] gi|172048444|sp|A5WBS3|RIMP_PSYWF RecName: Full=Ribosome maturation factor rimP gi|148571055|gb|ABQ93114.1| protein of unknown function DUF150 [Psychrobacter sp. PRwf-1] Length = 166 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 71/164 (43%), Gaps = 18/164 (10%) Query: 24 DISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVER------DDGNMTLRDCEELSQAI 76 ++ +I P + + L LL+I++E D +T+ +C ++ + Sbjct: 9 QLTDIIAPAVAACDVALWGVEFLPQGGRSLLRIYIEALPEDKAADKQVTIENCAAVTHQV 68 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG----DKQKLI 132 S +L+V + I G Y LEVSSPG+DRP + G + ++ + G ++K+ Sbjct: 69 SGVLEVHDPIAGEYVLEVSSPGLDRPFFAPEQMTDYMGQTINLRLIQAVGSGSSKRRKVT 128 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 GK+ + + + + I+ D++ A LI D Sbjct: 129 GKLEQLDDKQLSV-------VTADGERYDIALDNIDKANLIYQD 165 >gi|317490694|ref|ZP_07949160.1| hypothetical protein HMPREF1023_02860 [Eggerthella sp. 1_3_56FAA] gi|316910225|gb|EFV31868.1| hypothetical protein HMPREF1023_02860 [Eggerthella sp. 1_3_56FAA] Length = 159 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 56/157 (35%), Gaps = 11/157 (7%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQA 75 + + P E+ V + + K +++ ++ D ++ + Sbjct: 1 MLSKKEQQLLDALAPRAEQEGVEIVTVEVAGAKKAPTIRVCIDTPD-GVSFDELSSAQAW 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I+ ++D + G Y LEVSSPGIDRP+ F R+ G + + G I Sbjct: 60 INDLMDELDPFPGAYTLEVSSPGIDRPLRTAEHFARFVGDTAVLKT-QPVDGRGSWTGAI 118 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 L+ + + I D++ A L Sbjct: 119 ASVEGDVVVLDVDG--------AEARIPMDTIKRAHL 147 >gi|299771784|ref|YP_003733810.1| hypothetical protein AOLE_17760 [Acinetobacter sp. DR1] gi|298701872|gb|ADI92437.1| hypothetical protein AOLE_17760 [Acinetobacter sp. DR1] Length = 175 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 73/182 (40%), Gaps = 28/182 (15%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERD-------------- 60 + + +I P ++ I L K LL+I++++ Sbjct: 1 MKLSNKSQALHDLIVPAVQACGVDLWGIEFLPQGKRSLLRIYIDKAVSEEDAEPVLNEDG 60 Query: 61 ----DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHV 116 + ++DC ++Q + +LDV + I G Y LEVSSPG DRP + + G Sbjct: 61 EVELGRGIGVQDCVRVTQQVGAMLDVHDPISGEYSLEVSSPGWDRPFFQLEQLQGYIGQQ 120 Query: 117 VACEIVLSSGDKQKLIGKIMGTS--ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +A ++ + +++K K++ +E + + + I +++ A LI Sbjct: 121 IALRLIAAVENRRKFQAKLIAVDLENEEIQVEVDGK-------HVLEIDSNNIDKANLIY 173 Query: 175 TD 176 D Sbjct: 174 QD 175 >gi|71064648|ref|YP_263375.1| hypothetical protein Psyc_0067 [Psychrobacter arcticus 273-4] gi|91207994|sp|Q4FVL7|RIMP_PSYA2 RecName: Full=Ribosome maturation factor rimP gi|71037633|gb|AAZ17941.1| conserved hypothetical protein [Psychrobacter arcticus 273-4] Length = 166 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 70/173 (40%), Gaps = 21/173 (12%) Query: 19 MGLAGDISSV---IQPVIEEMSFRSVQISLLE-EKNLLLQIFVER------DDGNMTLRD 68 M L+ ++ + I P + I LL+I++E + +T+ + Sbjct: 1 MKLSTKVTELTNIIAPAVAACDVALWGIEFAPQGNRSLLRIYIEALPEEQAQNKQVTIEN 60 Query: 69 CEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD- 127 C ++ +S IL+V + I G + LEVSSPG DR + G V+ ++ + G+ Sbjct: 61 CAAVNHQVSGILEVHDPIAGEFILEVSSPGFDRAFFSDEQMHAYVGQTVSLRLIQAIGEG 120 Query: 128 ---KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 ++K G + T L + Q I+ ++ A LI D Sbjct: 121 DKKRRKATGTLNSIDGTSLKLT-------ATDGEQFEIALSNIDKANLIYEDA 166 >gi|153939522|ref|YP_001391720.1| hypothetical protein CLI_2478 [Clostridium botulinum F str. Langeland] gi|166987487|sp|A7GG10|RIMP_CLOBL RecName: Full=Ribosome maturation factor rimP gi|152935418|gb|ABS40916.1| conserved hypothetical protein [Clostridium botulinum F str. Langeland] gi|295319746|gb|ADG00124.1| conserved hypothetical protein [Clostridium botulinum F str. 230613] Length = 153 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 76/158 (48%), Gaps = 10/158 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 L ++ I+P+ E + + I ++ K L+I+++ + ++L CE++S+ Sbjct: 1 MSKHSLIENLKEQIEPIAEGLDYELYHIEFVKEGKENYLRIYIDS-ENGVSLEGCEKVSR 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S +LD + I+ Y LEVSSPGIDR + ++ G+ + + + K+K G+ Sbjct: 60 AVSELLDDIDPIQESYYLEVSSPGIDRVLYTDKHLEKYKGYNIVLNLYSAIDKKKKYEGE 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ +E ++ E E + I + + L Sbjct: 120 LVDFNENEIDIKVE--------ENIVTIPREKISKTTL 149 >gi|238019443|ref|ZP_04599869.1| hypothetical protein VEIDISOL_01312 [Veillonella dispar ATCC 17748] gi|237864142|gb|EEP65432.1| hypothetical protein VEIDISOL_01312 [Veillonella dispar ATCC 17748] Length = 170 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 76/162 (46%), Gaps = 9/162 (5%) Query: 11 YEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCE 70 E + +SSV++ +I V + + E++ L++++++ G + L DC+ Sbjct: 14 KEAMAMKREAVEEFVSSVVEGIIAGTEMELVDVDYVRERDWYLRVYLDKP-GGVDLDDCQ 72 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 +S+ +S +LD ++ I +Y LEVSSPG+DR + + D +R+NG V ++ ++ Sbjct: 73 LVSEKLSAVLDEKDPITENYLLEVSSPGLDRVLKKDKDLVRYNGRDVDIQLFKPINGSKQ 132 Query: 131 LIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G + G ++T + ++ RL Sbjct: 133 FTGVLEGFTDTTIDFTINGES--------MTFERSAIAQIRL 166 >gi|269797843|ref|YP_003311743.1| hypothetical protein Vpar_0782 [Veillonella parvula DSM 2008] gi|269094472|gb|ACZ24463.1| protein of unknown function DUF150 [Veillonella parvula DSM 2008] Length = 152 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 76/157 (48%), Gaps = 9/157 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 + +SSV++ +I V + + E++ L++++++ G + L DC+ +S+ Sbjct: 1 MKREAVEEFVSSVVEGIIAGTDMELVDVDYVRERDWYLRVYLDKP-GGVDLDDCQLVSEK 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LD ++ I +Y LEVSSPG+DR + + D +R+NG V ++ + ++ G + Sbjct: 60 LSAVLDEKDPITENYLLEVSSPGLDRVLKKDKDLVRYNGRDVDIQLFKAINGSKQFTGAL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G ++T + ++ RL Sbjct: 120 QGFTDTTIEFTINGES--------MTFERSTIAQIRL 148 >gi|237743253|ref|ZP_04573734.1| conserved hypothetical protein [Fusobacterium sp. 7_1] gi|229433032|gb|EEO43244.1| conserved hypothetical protein [Fusobacterium sp. 7_1] Length = 156 Score = 105 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 77/155 (49%), Gaps = 11/155 (7%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I+ ++ P +EEM+ V + ++ ++IF+E +G++++ DC +LS I Sbjct: 7 IVEKITEIVNPFVEEMNLSLVDVEYVQDGAYWYIRIFIENLNGDLSIEDCSKLSSKIEDK 66 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 + E +IE + LEVSSPG++RP+ + D++R+ G + + DK++ I + Sbjct: 67 I--EKLIEHKFFLEVSSPGLERPLKKIEDYIRFTGEKITLHLKHKLDDKKQFKAIIKEVN 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + +I I F+ + A ++ Sbjct: 125 GNNIIFLIDNK--------EIEIKFNEIRKANILF 151 >gi|19705319|ref|NP_602814.1| putative cytoplasmic protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|34223125|sp|Q8RHJ4|RIMP_FUSNN RecName: Full=Ribosome maturation factor rimP gi|19713290|gb|AAL94113.1| Hypothetical cytosolic protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 156 Score = 105 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 77/155 (49%), Gaps = 11/155 (7%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I+ ++ P IEEM+ V + +++ ++IF+E +G++ + DC +LS I Sbjct: 7 IVEKITRIVNPFIEEMNLSLVDVEYVQDGGYWYVRIFIENLNGDLNIEDCSKLSSKIED- 65 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 VE +IE + LEVSSPG++RP+ + D+ R+ G + + DK++ I + Sbjct: 66 -KVEELIEHKFFLEVSSPGLERPLKKLEDYTRFIGEKITLHLKHKLDDKKQFKTIIKEVN 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +K+ ++ I F+ + A ++ Sbjct: 125 GDNIIFLMDKK--------EVEIKFNEIRKANILF 151 >gi|28210958|ref|NP_781902.1| hypothetical protein CTC01272 [Clostridium tetani E88] gi|34222839|sp|Q895K1|RIMP_CLOTE RecName: Full=Ribosome maturation factor rimP gi|28203397|gb|AAO35839.1| protein associated with NUS operon [Clostridium tetani E88] Length = 153 Score = 105 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 65/152 (42%), Gaps = 10/152 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILD 81 ++ + +P++ ++ + + + E L+I+++ + + L DCE++S+A+S +LD Sbjct: 8 DNLKELTEPIVNDLDYELYYLEFVNENKENYLRIYIDS-ESGIGLEDCEKVSRAVSAMLD 66 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 ++ I+ Y LEVSSPG++R + G + +K GK+ Sbjct: 67 EKDPIDTSYYLEVSSPGLERQLYDDKHIEDNIGKTACVRLESLFNGGRKFEGKLKSFDNE 126 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 LE K I + LI Sbjct: 127 NLTLEINAEDFK--------IPRKKIKRINLI 150 >gi|168187911|ref|ZP_02622546.1| conserved hypothetical protein [Clostridium botulinum C str. Eklund] gi|169294239|gb|EDS76372.1| conserved hypothetical protein [Clostridium botulinum C str. Eklund] Length = 154 Score = 105 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 36/148 (24%), Positives = 76/148 (51%), Gaps = 10/148 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 +I+ +I+P++EE+++ I +E+ L+I+++ + L DCE++S+ +S ILD Sbjct: 9 DEINKLIKPIVEELNYELYYIEYVVEQNENYLRIYIDSS-KGINLDDCEKVSRRVSEILD 67 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 ++ I Y LEVSSPGI+R + ++ + + ++ ++ GK++ ++ Sbjct: 68 EKDPISDSYYLEVSSPGIERVLYTDEHLHKYTNNQIIIKLGKLFEGSREHQGKLLSFNDD 127 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLS 169 +E+E I+I D + Sbjct: 128 TVVIERENES--------ISIPRDRIKK 147 >gi|239626255|ref|ZP_04669286.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520485|gb|EEQ60351.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 155 Score = 105 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 36/146 (24%), Positives = 69/146 (47%), Gaps = 2/146 (1%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAI 76 + + P++EE F V + ++E L+ ++++ +G + + DCE +S+ + Sbjct: 4 KENYESRVERYLLPLMEEHHFELVDVEYVKEAGTWYLRAYIDK-EGGIAVDDCEVISRKL 62 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 LD E+ I+ Y LEVSSPG+ RP+ ++ DF+R G V + +++ G + Sbjct: 63 GDWLDKEDFIDESYILEVSSPGLGRPLKKEKDFIRSMGKDVDVRLYRQIDKQKEFTGALS 122 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAI 162 L E + + IA+ Sbjct: 123 AYDGNTVTLTMEDGSQMVFEKPDIAL 148 >gi|299144045|ref|ZP_07037125.1| 15 kDa protein [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518530|gb|EFI42269.1| 15 kDa protein [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 153 Score = 105 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 19/170 (11%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 L I ++ + E+ + V + + K+ LL IF+ + + + + DC +S+ Sbjct: 1 MKKNDLIDKIKNIAEECSNEIGYEIVDVEYQVGNKHDLLSIFIYKKE-GIDINDCTNMSR 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 I ILD E+II+ Y LE+SSPG+DRP+ K D+ R G+ V ++ K+ + G Sbjct: 60 IIESILDKEDIIDKPYYLEISSPGLDRPLKTKDDYRRNVGNEVTVKLYAPLDGKKLIEGI 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLN 184 + E+ L E I I S+ L+R S+ Sbjct: 120 LENYDESIIILSVEDEK--------IEIPIKSIS---------LMRQSIK 152 >gi|118443860|ref|YP_878212.1| hypothetical protein NT01CX_2139 [Clostridium novyi NT] gi|259585741|sp|A0Q0R0|RIMP_CLONN RecName: Full=Ribosome maturation factor rimP gi|118134316|gb|ABK61360.1| Hypothetical UPF0090 protein [Clostridium novyi NT] Length = 154 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 74/148 (50%), Gaps = 10/148 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 +I+ +I+P++EE+++ I + E L+I+++ + L DCE++S+ +S ILD Sbjct: 9 DEINKLIKPIVEELNYELYYIEYVREQNENYLRIYIDSS-KGINLEDCEKVSRKVSDILD 67 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 ++ I Y LEVSSPGI+R + + ++ + + ++ ++ G ++ ++ Sbjct: 68 EKDPISDSYYLEVSSPGIERVLYTEEHLHKYTNNQIIVKLAKLFEGSREHQGNLISFNDD 127 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLS 169 +EKE I I + + Sbjct: 128 TVTIEKENES--------INIPRERIKK 147 >gi|93004903|ref|YP_579340.1| hypothetical protein Pcryo_0072 [Psychrobacter cryohalolentis K5] gi|122416155|sp|Q1QEP7|RIMP_PSYCK RecName: Full=Ribosome maturation factor rimP gi|92392581|gb|ABE73856.1| protein of unknown function DUF150 [Psychrobacter cryohalolentis K5] Length = 166 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 70/173 (40%), Gaps = 21/173 (12%) Query: 19 MGLAGDISSV---IQPVIEEMSFRSVQISLLE-EKNLLLQIFVER------DDGNMTLRD 68 M L+ ++ + I P + I LL+I++E + +T+ + Sbjct: 1 MKLSTKVTELTNIIAPAVAACDVALWGIEFAPQGNRSLLRIYIEALPEEQAQNKQVTIEN 60 Query: 69 CEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD- 127 C ++ +S IL+V + I G + LEVSSPG DR + G V+ ++ + G+ Sbjct: 61 CAAVNHQVSGILEVHDPISGEFILEVSSPGFDRAFFSDEQMHAYVGQTVSLRLIQAIGEG 120 Query: 128 ---KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 ++K G + T L + Q I+ ++ A LI D Sbjct: 121 DKKRRKATGTLNSIDATSLKLT-------ATDGEQFEIALSNIDKANLIYEDA 166 >gi|256028608|ref|ZP_05442442.1| putative cytoplasmic protein [Fusobacterium sp. D11] gi|289766526|ref|ZP_06525904.1| conserved hypothetical protein [Fusobacterium sp. D11] gi|289718081|gb|EFD82093.1| conserved hypothetical protein [Fusobacterium sp. D11] Length = 156 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 78/155 (50%), Gaps = 11/155 (7%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I+ ++ P +EEM+ V + ++ ++IF+E +G++++ DC +LS I Sbjct: 7 IVEKITEIVNPFVEEMNLSLVDVEYVQDGAYWYIRIFIENLNGDLSIEDCSKLSSKIEDK 66 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 + E +IE + LEVSSPG++RP+ + D++R+ G + + DK++ I + Sbjct: 67 I--EKLIEHKFFLEVSSPGLERPLKKIEDYIRFTGEKITLHLKHKLDDKKQFKAIIKEVN 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +K+ +I I F+ + A ++ Sbjct: 125 GNNIIFLIDKK--------EIEIKFNEIRKANILF 151 >gi|291543556|emb|CBL16665.1| Uncharacterized protein conserved in bacteria [Ruminococcus sp. 18P13] Length = 158 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 71/152 (46%), Gaps = 10/152 (6%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + ++ P+ E + + + + L++F+++D+ +++ DCE +S+ +S +L Sbjct: 10 EQKVYALAAPLAESLGLVIWDVRFEKEGASWYLRVFIDKDE-GISIDDCEAMSRPLSDLL 68 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG-DKQKLIGKIMGTS 139 D + I+ Y LEV S G++R +VR+S F G VV ++ +++ +G + Sbjct: 69 DEADPIDQQYFLEVGSAGLERDLVRESHFAASIGAVVRMRLIRPDETGQKEYVGALESFD 128 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 + L E + + F ++ + Sbjct: 129 KEQVRLVLED-------DTTVTAPFANIAHIK 153 >gi|313892594|ref|ZP_07826181.1| conserved hypothetical protein [Dialister microaerophilus UPII 345-E] gi|313118991|gb|EFR42196.1| conserved hypothetical protein [Dialister microaerophilus UPII 345-E] Length = 156 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 79/149 (53%), Gaps = 4/149 (2%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 + + ++IQPV+E+ V + + E+N +L+IF+++ DG + L DC+E+S + Sbjct: 1 MSHKEIESAVEALIQPVLEKKGIEVVDVEYVRERNWILRIFIDK-DGGVDLNDCQEISVS 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD---KQKLI 132 ++D ++I +Y LEVSSPGIDR + + DF+R+ V+ ++ + ++ Sbjct: 60 AGELIDKNDLISDNYMLEVSSPGIDRVLKKDKDFIRYKDSKVSVKLFAPVEELNLDKEFT 119 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIA 161 + G L + E +++ +I+ Sbjct: 120 AILNGLVNDEISLILDDGREIFLSKKKIS 148 >gi|187778985|ref|ZP_02995458.1| hypothetical protein CLOSPO_02580 [Clostridium sporogenes ATCC 15579] gi|187772610|gb|EDU36412.1| hypothetical protein CLOSPO_02580 [Clostridium sporogenes ATCC 15579] Length = 153 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 77/158 (48%), Gaps = 10/158 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 L ++ I+P+++ +S+ I ++ K L+I+++ + ++L CE++S+ Sbjct: 1 MSKHSLIENLKKQIEPIVKGLSYDLYHIEFVKEGKENYLRIYIDS-ESGVSLEGCEKVSR 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S +LD + I+ Y LEVSSPGIDR + ++ G+ + + K+K G+ Sbjct: 60 AVSELLDDIDPIQESYYLEVSSPGIDRVLYTDKHLEKYKGYNIVLNLYSPIDKKKKYEGE 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ +E ++ E E + I + + L Sbjct: 120 LVDFNENEINIKVE--------ENIVIIPREKISKTTL 149 >gi|225390158|ref|ZP_03759882.1| hypothetical protein CLOSTASPAR_03908 [Clostridium asparagiforme DSM 15981] gi|225043752|gb|EEG53998.1| hypothetical protein CLOSTASPAR_03908 [Clostridium asparagiforme DSM 15981] Length = 156 Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 37/159 (23%), Positives = 70/159 (44%), Gaps = 9/159 (5%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAI 76 + + + P++EE F V + ++E L+ ++++ +G + + DCE +S+ + Sbjct: 5 KESYESRVEAYLLPLMEEHHFELVDVEYVKEAGTWYLRAYIDK-EGGIAVDDCEVISRKL 63 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 LD E+ I Y LEVSSPG+ RP+ ++ DF+R G V + +++ G + Sbjct: 64 GDWLDKEDFISESYILEVSSPGLGRPLKKEKDFVRSLGKDVEVRLYRMRDKQKEFTGALS 123 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 L+ E Q+ + RL Sbjct: 124 AYDAQTVTLDMED-------GSQMVFDRADIALIRLAFD 155 >gi|315653431|ref|ZP_07906353.1| protein of hypothetical function DUF150 [Lactobacillus iners ATCC 55195] gi|315489356|gb|EFU78996.1| protein of hypothetical function DUF150 [Lactobacillus iners ATCC 55195] Length = 158 Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 69/152 (45%), Gaps = 7/152 (4%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILD 81 + VI P++ V I ++E N L+I+V+R+ + + + LS+++S LD Sbjct: 6 DKVIEVITPLVHARGDELVDIEYVKENNQNYLRIYVDREPNGIDIDEIATLSESVSEQLD 65 Query: 82 --VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 + + Y LE+SSPG++RP+ ++D+ + V + ++ G ++ Sbjct: 66 LINPDPLPDPYILELSSPGVERPIKTEADWCKAKNDYVHVGLYKKINGQKSYEGTLLDYD 125 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 LE + + +I I + + + R Sbjct: 126 MDKIILEI----KIKTQQQKITIPRNMIANIR 153 >gi|268608288|ref|ZP_06142015.1| hypothetical protein RflaF_02144 [Ruminococcus flavefaciens FD-1] Length = 157 Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 76/157 (48%), Gaps = 9/157 (5%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISP 78 G + +I+P+ +E+ + + ++E L+IF+++D+ +++ DCE + IS Sbjct: 8 GTEQKVYDLIKPITDELGYYLWDVCYVKEGAMWYLRIFIDQDE-GISIDDCERATAPISD 66 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 ILD + + Y LEV S G++R +V++ F G V + + ++++ +++G Sbjct: 67 ILDEADPVPQQYMLEVGSAGLERELVKEEHFEVCKGDTVTLKFFRAVDGEKEIRAELVGA 126 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + G + KE EK I + +L + Sbjct: 127 DKDGITVIKEDGTEK-------TIPLADVSVVKLWLD 156 >gi|126657164|ref|ZP_01728330.1| hypothetical protein CY0110_24586 [Cyanothece sp. CCY0110] gi|126621435|gb|EAZ92146.1| hypothetical protein CY0110_24586 [Cyanothece sp. CCY0110] Length = 151 Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 72/147 (48%), Gaps = 1/147 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L I + P+++EM V++ ++ +L++ + D + +L DCE++S+A+ + Sbjct: 5 LIPQIIDLATPIVQEMGLDVVEVVFQTNKRPPVLRVDIRNPDSDTSLNDCEQVSRALEAV 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD I+ G Y LE+SSPGI R + + DF+ + G V DK++ G++ G Sbjct: 65 LDETAIMPGAYVLEISSPGISRYLSDERDFVAFKGFEVNVTTNPPYKDKKEWQGRLQGRD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDS 166 + +L ++ R + + Sbjct: 125 DKAVYLNRKGRAIAIPCSVITQVQLAD 151 >gi|313885302|ref|ZP_07819053.1| conserved hypothetical protein [Eremococcus coleocola ACS-139-V-Col8] gi|312619408|gb|EFR30846.1| conserved hypothetical protein [Eremococcus coleocola ACS-139-V-Col8] Length = 157 Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 70/156 (44%), Gaps = 8/156 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + +I+ + R V + L+E L+++ ++ DG + L DC +S+ +S Sbjct: 4 VLEKVRPIIEETVAANDCRLVDLEYLKEGPNWYLRVYADK-DGGIDLDDCAFISEKLSEA 62 Query: 80 LD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LEVSSPG +RP+ +D G V + + ++ G ++ Sbjct: 63 LDLIKPDPFPKSYYLEVSSPGAERPLKTAADIEAAVGEYVHFDYYVPQYGEKFHEGNLLA 122 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 +T + +E + + ++ I ++ ARL Sbjct: 123 VEDTLYRIEVKDK----TRRKELEIDKKAVAKARLA 154 >gi|319944111|ref|ZP_08018389.1| hypothetical protein HMPREF0551_1236 [Lautropia mirabilis ATCC 51599] gi|319742605|gb|EFV95014.1| hypothetical protein HMPREF0551_1236 [Lautropia mirabilis ATCC 51599] Length = 208 Score = 104 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 60/115 (52%), Gaps = 6/115 (5%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDG--NMTLRDCEELSQAISPILDVENI 85 ++ PV+ M + V + + LL+I +E D +TL DCE +S+ +S + VE++ Sbjct: 1 MVDPVVSGMGYEVVDVEFVAGG--LLRITIENVDHAQPITLDDCERVSEQLSHLFLVEDV 58 Query: 86 IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + RLE+SSPG+DR + R DF R+ G V + + ++ G ++ Sbjct: 59 --DYDRLEISSPGLDRRLRRPQDFARFTGDEVKLWLRMPQDGRRTFEGVLLSAEP 111 >gi|227890228|ref|ZP_04008033.1| protein of hypothetical function DUF150 [Lactobacillus johnsonii ATCC 33200] gi|227849230|gb|EEJ59316.1| protein of hypothetical function DUF150 [Lactobacillus johnsonii ATCC 33200] Length = 172 Score = 104 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 68/156 (43%), Gaps = 7/156 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQAIS 77 + ++ V+ P+ E V + ++EK L+I+V+R G + + + LS+ +S Sbjct: 16 TKVTELVADVVTPLAEARGDELVDVEYVKEKKQYYLRIYVDRRPGGIDIEEIANLSELVS 75 Query: 78 PILDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + Y LE+SSPG++RP+ + D+ R G + + ++ G + Sbjct: 76 EKLDELDPDPFPEPYILELSSPGLERPIKNEKDWERAKGSYIHVSLYQKIDGEKAFEGTL 135 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 ++ LE + I I + S+R Sbjct: 136 KDLNQDQIVLEV----KIKTRRKYITIPRKVIASSR 167 >gi|302387321|ref|YP_003823143.1| protein of unknown function DUF150 [Clostridium saccharolyticum WM1] gi|302197949|gb|ADL05520.1| protein of unknown function DUF150 [Clostridium saccharolyticum WM1] Length = 155 Score = 104 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 71/149 (47%), Gaps = 2/149 (1%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELS 73 + + P+++E F V + ++E + L+ ++++ +G +T+ DCE +S Sbjct: 1 MAKKEEYEAKTEGFLLPLMKENHFELVDVEYVKEAGSWYLRAYIDK-EGGITVDDCETIS 59 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 + + LD ++ I Y LEVSSPG+ RP+ + DF R G V ++ ++ G Sbjct: 60 RRLGDWLDEKDFIADSYILEVSSPGLGRPLKKDKDFNRSIGKEVDIKLYKPLNKQKDFTG 119 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAI 162 + + +E E +N +IA+ Sbjct: 120 TLTSYDRETVTITQEDGIELVLNRPEIAL 148 >gi|290969146|ref|ZP_06560671.1| conserved hypothetical protein [Megasphaera genomosp. type_1 str. 28L] gi|290780652|gb|EFD93255.1| conserved hypothetical protein [Megasphaera genomosp. type_1 str. 28L] Length = 153 Score = 104 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 67/125 (53%), Gaps = 1/125 (0%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 + ++ + ++ S V + + EK+ L++F+++ +G + L DC+++S+ Sbjct: 4 MKREQIETWVTEKAEQLLASTSLELVDVEYVREKDWYLRVFIDK-EGGVDLEDCQQVSEK 62 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S +LD E+ I +Y LEVSSPG+DR + + DFLR+ G V K+ +G++ Sbjct: 63 LSKVLDREDPIRDNYLLEVSSPGLDRILKKDKDFLRYAGRTVDIHFFAPREGKKDWVGEL 122 Query: 136 MGTSE 140 + Sbjct: 123 VKKDG 127 >gi|319947586|ref|ZP_08021816.1| hypothetical protein containing DUF150 [Streptococcus australis ATCC 700641] gi|319746274|gb|EFV98537.1| hypothetical protein containing DUF150 [Streptococcus australis ATCC 700641] Length = 195 Score = 104 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 75/157 (47%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + ++ ++QP I+ F V + + + +L IFV++ G +TL D +L++ ISP+ Sbjct: 43 IVELVTEILQPAIQA-PFELVDVEYGKMGGDYVLSIFVDKP-GGITLNDTADLTEVISPL 100 Query: 80 LDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LEV+SPG++RP+ K + G + + + ++ + G ++ Sbjct: 101 LDQIQPDPFPEQYFLEVTSPGLERPLKTKDAVEKSLGQYIHVSLYKAVDKQKVIEGTLVK 160 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + +E + K I I + + ARL V Sbjct: 161 FEDDQLTMEYMDKTRKK----TIEIPYSLVSKARLAV 193 >gi|326803577|ref|YP_004321395.1| hypothetical protein HMPREF9243_1141 [Aerococcus urinae ACS-120-V-Col10a] gi|326650272|gb|AEA00455.1| conserved hypothetical protein [Aerococcus urinae ACS-120-V-Col10a] Length = 157 Score = 104 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 76/157 (48%), Gaps = 8/157 (5%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + + ++I+ I EM ++ I+ + K+ L+I+++ +D +T+ DC + S+ IS Sbjct: 3 KVTDQVKALIEADINEMGYQLFDITFSKEGKDWYLRIYIDNND-GITIADCVKASEKISE 61 Query: 79 ILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 ILD ++ I Y LEVSSPG +RP+ + + G V + + G+++ Sbjct: 62 ILDNVEDDPIPQAYYLEVSSPGAERPLNNDNAIQQAIGKWVHLNFYHEIDGSKFVEGRLL 121 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 SE F LE + + + + + S+ RL Sbjct: 122 EASEQYFTLEVKDKTRRLVQD----FPRKSVSLIRLA 154 >gi|116748666|ref|YP_845353.1| hypothetical protein Sfum_1226 [Syntrophobacter fumaroxidans MPOB] gi|259645123|sp|A0LHL6|RIMP_SYNFM RecName: Full=Ribosome maturation factor rimP gi|116697730|gb|ABK16918.1| protein of unknown function DUF150 [Syntrophobacter fumaroxidans MPOB] Length = 168 Score = 104 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 76/153 (49%), Gaps = 10/153 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + + +PVI ++I E +L++FV++ +G +++ DC +S+ + + Sbjct: 17 IVRQVWDLTEPVIRAEGMEIIEIEYRRESPGWVLRVFVDQ-EGGVSVDDCARISRVVGDL 75 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV +II Y LEVSSPG++RP+ ++ F + G V+ + ++ G ++ G + Sbjct: 76 LDVADIIHYPYHLEVSSPGLNRPLRKREQFAKVVGKVIEVKTLVPFGTRRNFKGILKEVG 135 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ + + I F ++ ARL Sbjct: 136 VERIRMDCDNQL--------FEIPFSNMDRARL 160 >gi|282857787|ref|ZP_06266996.1| conserved hypothetical protein [Pyramidobacter piscolens W5455] gi|282584457|gb|EFB89816.1| conserved hypothetical protein [Pyramidobacter piscolens W5455] Length = 165 Score = 104 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILD 81 IS ++ ++E + + V ++E +L+++++R DG + L DCE ++ I +LD Sbjct: 4 EKISGQLKTLVESLGYEFVGAETVKEAGSQILRVYIDR-DGGVGLDDCERSAKEIGALLD 62 Query: 82 -VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + E HY LEVSSPG++RP+ + D+ R+ G V + ++++ I G + Sbjct: 63 TAADAFEDHYLLEVSSPGLERPLFKAEDYARFAGRPVNVRLKGVYEGRRRVTAVIEGVKD 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 L+ + + + A L+ +E Sbjct: 123 GSVLLDC--------GGEPLDLPLAEIQRAHLVYVEE 151 >gi|296328567|ref|ZP_06871086.1| probable cytoplasmic protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154376|gb|EFG95175.1| probable cytoplasmic protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 156 Score = 104 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 77/155 (49%), Gaps = 11/155 (7%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I+ ++ P IEEM+ V + +++ ++IF+E +G++ + DC +LS I Sbjct: 7 IVEKITRIVNPFIEEMNLSLVDVEYVQDGGYWYVRIFIENLNGDLNIEDCSKLSSKIEDK 66 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 + E +IE + LEVSSPG++RP+ + D+ R+ G + + DK++ I + Sbjct: 67 I--EELIEHKFFLEVSSPGLERPLKKLEDYTRFIGEKITLHLKHKLDDKKQFKTIIKEVN 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +K+ ++ I F+ + A ++ Sbjct: 125 GDNIIFLMDKK--------EVEIKFNEIRKANILF 151 >gi|15895074|ref|NP_348423.1| hypothetical protein CA_C1798 [Clostridium acetobutylicum ATCC 824] gi|34223132|sp|Q97I55|RIMP_CLOAB RecName: Full=Ribosome maturation factor rimP gi|15024771|gb|AAK79763.1|AE007689_1 Uncharacterized protein, YhbC family [Clostridium acetobutylicum ATCC 824] gi|325509212|gb|ADZ20848.1| Conserved hypothetical protein [Clostridium acetobutylicum EA 2018] Length = 149 Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 71/133 (53%), Gaps = 2/133 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + +I+PV+E + + I +++E L++++++ + ++L DCE++S+AIS + Sbjct: 1 MIDKLIEIIRPVVESLGYEFYHIEIVKEDGERYLRVYIDK-ENGISLDDCEKVSRAISDL 59 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD ++ I Y LEVSSPGI R + + ++ G+ V ++ S GK++ + Sbjct: 60 LDEKDPIPYSYYLEVSSPGIYRTLFTEEHLKKYIGNTVDIKLKSSLEKSTNYSGKLIDVN 119 Query: 140 ETGFFLEKEKRGE 152 E + E Sbjct: 120 EEDIVIVVSDNRE 132 >gi|160880909|ref|YP_001559877.1| hypothetical protein Cphy_2778 [Clostridium phytofermentans ISDg] gi|226701647|sp|A9KNW8|RIMP_CLOPH RecName: Full=Ribosome maturation factor rimP gi|160429575|gb|ABX43138.1| protein of unknown function DUF150 [Clostridium phytofermentans ISDg] Length = 155 Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 73/155 (47%), Gaps = 9/155 (5%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++ P++EE +F V + ++E N L+ ++++ +G +T+ DCE +S+ S +L Sbjct: 8 ELKAEQLLTPIMEENNFELVDVEYVKEVGNWYLRAYIDK-EGGITVDDCEVVSRRFSDLL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D ++ I Y LEVSSPG+ R + + DF R G V ++ + ++ G + + Sbjct: 67 DEKDFIPDAYILEVSSPGLGRQLKKDKDFKRSLGEEVEIKLYKAINKQKDFEGILTDFDQ 126 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +E + + + + RL + Sbjct: 127 EKLIIE-------QADGTTMEFARADIAMVRLALD 154 >gi|284108774|ref|ZP_06386439.1| protein of unknown function DUF150 [Candidatus Poribacteria sp. WGA-A3] gi|283829848|gb|EFC34139.1| protein of unknown function DUF150 [Candidatus Poribacteria sp. WGA-A3] Length = 157 Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 77/153 (50%), Gaps = 2/153 (1%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 GL + + +P+ + + +++ + + + +G + ++DCE+ Q++ Sbjct: 3 GLGSLVQGIAEPIAKALRLEIIEVECHGQGAKTIVRVIVEKEGGVGIQDCEQFHQSLGRA 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + + YRL+VSSPG+DRP+ R+ D+ + G + ++ K ++G++ Sbjct: 63 LDVADPVAHAYRLDVSSPGLDRPLKRRKDYDQAVGRTIRVKVHAPVQGKGTVVGQLAEVD 122 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + G L+ K ++A+ +D++ A+L Sbjct: 123 DQGITLQV--PVRKSRTPRRVALEWDAIAHAKL 153 >gi|118594130|ref|ZP_01551477.1| hypothetical protein MB2181_00640 [Methylophilales bacterium HTCC2181] gi|118439908|gb|EAV46535.1| hypothetical protein MB2181_00640 [Methylophilales bacterium HTCC2181] Length = 145 Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 74/149 (49%), Gaps = 11/149 (7%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 D+ S I+ ++ ++ + V + ++ LL++F+++ + +T+ DC +S ++ L VE Sbjct: 4 DVESFIEKMVTQLGYELVDLEIINH-GQLLRVFIDKPE-IVTIDDCVLVSNQLNHALSVE 61 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 RLE+SSPG+DR + + DF R++G + + +++ G + G Sbjct: 62 EEF-DFGRLEISSPGVDRVIKKLEDFGRFDGEKIKIKTRSPISNRRNFSGVLRGIKAGFI 120 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 LE + + I F+++ ARL Sbjct: 121 LLEFDG--------SIVEIDFENIDRARL 141 >gi|259501584|ref|ZP_05744486.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] gi|302191442|ref|ZP_07267696.1| hypothetical protein LineA_05504 [Lactobacillus iners AB-1] gi|309807190|ref|ZP_07701164.1| conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] gi|259167102|gb|EEW51597.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] gi|308166411|gb|EFO68616.1| conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] Length = 158 Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 70/152 (46%), Gaps = 7/152 (4%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILD 81 + VI P++ V I ++E N L+I+V+R+ + + + LS+++S LD Sbjct: 6 DKVIEVITPLVHARGDELVDIEYVKENNQNYLRIYVDREPNGIDIDEIATLSESVSEQLD 65 Query: 82 --VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 + + Y LE+SSPG++RP+ ++D+ + V + ++ G ++ Sbjct: 66 LINPDPLPDPYILELSSPGVERPIKTEADWCKAKNDYVHVGLYKKINGQKSYEGTLLDYD 125 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 LE + + +IAI + + + R Sbjct: 126 MDKIILEI----KIKTQQKKIAIPRNMIANIR 153 >gi|260887248|ref|ZP_05898511.1| putative cytoplasmic protein [Selenomonas sputigena ATCC 35185] gi|330838994|ref|YP_004413574.1| Ribosome maturation factor rimP [Selenomonas sputigena ATCC 35185] gi|260863310|gb|EEX77810.1| putative cytoplasmic protein [Selenomonas sputigena ATCC 35185] gi|329746758|gb|AEC00115.1| Ribosome maturation factor rimP [Selenomonas sputigena ATCC 35185] Length = 150 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 74/156 (47%), Gaps = 10/156 (6%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAI 76 + + +++Q ++++ + V + ++E++ L++++++ +G + + DC+ +S+ + Sbjct: 1 MAKHIEEAVEAIVQEIVQDSNLEVVDVEYVKERDWYLRVYLDK-EGGIEIDDCQRVSETL 59 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 ILD ++++ Y LEVSSPG+DR + + DF R G V K+ +G + Sbjct: 60 EQILDEKDLLTEAYILEVSSPGLDRVLKKARDFEREQGKAVDVTFYAPVDGKKTWVGTLT 119 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G + + + + + RL Sbjct: 120 GYDPGKNAIVLDGEK---------ELPLEKIAQVRL 146 >gi|325685947|gb|EGD28010.1| hypothetical protein HMPREF5505_0324 [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 176 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 69/162 (42%), Gaps = 8/162 (4%) Query: 13 PRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEE 71 R L I I+PVI V + ++EK+ L+I+V++ + + E Sbjct: 15 RRKILPKNLT-PILEAIEPVIIGHDCELVDLEYVKEKSQYYLRIYVDKQPNGIDIETIAE 73 Query: 72 LSQAISPIL--DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ 129 LS+ + L + + Y LE+SSPG++RP+ ++ D+ + G + + ++ Sbjct: 74 LSELVGEKLDSMQPDPLPDPYILELSSPGLERPIKKEQDWEKAKGQYIHVGLYQKLEGEK 133 Query: 130 KLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 G ++ + LE + Q+ I + SAR Sbjct: 134 VFEGHLLDLDDQEIKLEI----KIKTRRKQLTIPRKQIASAR 171 >gi|302670326|ref|YP_003830286.1| hypothetical protein bpr_I0962 [Butyrivibrio proteoclasticus B316] gi|302394799|gb|ADL33704.1| hypothetical protein bpr_I0962 [Butyrivibrio proteoclasticus B316] Length = 154 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 66/152 (43%), Gaps = 2/152 (1%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELS 73 + + +++ P+ E R + ++E L+ ++++ DG + + +C ++S Sbjct: 1 MSKKDDIEKKTEALLTPIAEANGVRVYDVEYVKEAGEWYLRAYIDK-DGGVDINECVDVS 59 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 A+S LDV++ IE Y LEVSSPG+ R + + F G V ++ ++ G Sbjct: 60 HALSDALDVDDFIEEAYTLEVSSPGLGRQLKKDRHFANSIGQDVELKLFKPRDGVKEFAG 119 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFD 165 + +T + E + + I Sbjct: 120 TLKSFDDTTVTVTINDIDETFIRKEISVIKLA 151 >gi|300312900|ref|YP_003776992.1| hypothetical protein Hsero_3606 [Herbaspirillum seropedicae SmR1] gi|300075685|gb|ADJ65084.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 164 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 71/164 (43%), Gaps = 17/164 (10%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-------MTLRDCEELSQAI 76 + +I+ + + + V + L+++F++ +T+ DCE+ + + Sbjct: 2 QLLELIESTLSGLGYELV--EFEKAPRGLVRVFIDFPFDPEAEEARSITVEDCEKATHQL 59 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD---KQKLIG 133 + VEN++ + RLEVSSPG+DRP+ + SDF+R+ ++ + ++ G Sbjct: 60 LHVFTVENVL--YERLEVSSPGLDRPLKKFSDFVRFVDCEAVIKLRVPLPGTSNRKTYEG 117 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 + LE E D + + + + A L+ + Sbjct: 118 VLREPEGEELVLEFE---ANDGSAAVLNFTLADVDKAHLVPQVD 158 >gi|303248241|ref|ZP_07334504.1| protein of unknown function DUF150 [Desulfovibrio fructosovorans JJ] gi|302490379|gb|EFL50290.1| protein of unknown function DUF150 [Desulfovibrio fructosovorans JJ] Length = 180 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 66/178 (37%), Gaps = 13/178 (7%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLL-QIFVERDDG--------NMTLRDCEE 71 + I +I P + + L + L +++++ D +T+ +C Sbjct: 7 VPEKIRELISPFLTAKGLAVWGVELAASGHRQLVRLYLDLADDVVRTPERRGVTIDECAT 66 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+ + +L++E++ G Y LEVSSPG R + G + ++ +++ Sbjct: 67 VSRHLGTLLEMEDLFHGPYVLEVSSPGFGRRFFSADQLPAYIGEAIEAKLAAPRDGRKRF 126 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSY 189 GK+ + + + ++ FD RLI + + G Sbjct: 127 RGKLSAVDGSRVTMTVNPGPQAFS----LSFEFDEADKVRLIHAFDAISEGEAADGDA 180 >gi|257453567|ref|ZP_05618857.1| hypothetical protein ENHAE0001_1621 [Enhydrobacter aerosaccus SK60] gi|257449025|gb|EEV23978.1| hypothetical protein ENHAE0001_1621 [Enhydrobacter aerosaccus SK60] Length = 169 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 76/162 (46%), Gaps = 14/162 (8%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVER------DDGNMTLRDCEELSQA 75 +++ +I+P + I + + LL+I++E + +T+ DC ++ Sbjct: 8 AELTQIIEPAVTACDVSLWGIEFVPQGRRSLLRIYIEALPEDRAEGKQVTIEDCAAVTHQ 67 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS----GDKQKL 131 + +LD+ + I G Y LEVSSPG+DR + G ++ ++ + ++K+ Sbjct: 68 VGGVLDLHDPIAGEYLLEVSSPGLDRAFFSAEQLHDYVGQTISLRLIHAIGQGSDKRRKV 127 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 G+++ E ++ E +N+ +AI D++ A L+ Sbjct: 128 TGELVNIDERQLTVKTEND---QVNDQLLAIELDNIDKANLV 166 >gi|257463890|ref|ZP_05628276.1| putative cytoplasmic protein [Fusobacterium sp. D12] gi|317061419|ref|ZP_07925904.1| conserved hypothetical protein [Fusobacterium sp. D12] gi|313687095|gb|EFS23930.1| conserved hypothetical protein [Fusobacterium sp. D12] Length = 153 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILD 81 I ++ P E++ V + +++ ++I+VE+ DG++ L DC LS I Sbjct: 6 QKIEKIVTPEAEKLGLSLVDVEYMQDGGYWYVRIYVEKLDGDVNLEDCANLSGNIED--A 63 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 V+ +I+ + LEVSSPGI+RP+ +++DF+R+ G + + +K+ + G ++ Sbjct: 64 VDQLIDKKFFLEVSSPGIERPLKKEADFIRFTGEKIFVALKHKIHEKRNVEGILLAYENQ 123 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELL 179 ++ ++ I F + + L+ + Sbjct: 124 T--------LLLEVEGEELQIPFSEVKKSHLVFDFDEF 153 >gi|330718232|ref|ZP_08312832.1| hypothetical protein LfalK3_02050 [Leuconostoc fallax KCTC 3537] Length = 158 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 73/164 (44%), Gaps = 14/164 (8%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGN-MTLRDCEELSQ 74 + ++ +++PVI+E ++ E +L+I +++ D +T+ D +L++ Sbjct: 1 MASKVEQTVAQLVKPVIDEHGDILWDLTFGNEGGQRVLRILIDKADHEFITMNDLTKLTE 60 Query: 75 AISPILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWN--GHVVACEIVLSSGDKQK 130 I+ +LD + I G Y L++SSPG DRP+ + + + ++ ++K Sbjct: 61 EINELLDNSEPDPIPGTYMLDISSPGADRPLKALWHYQWAQEADENILVSLFVAKNGRKK 120 Query: 131 LIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 GKI ++ L + + ++F + A L V Sbjct: 121 WQGKISEINDDAIVLITDDE--------TLTLAFSEIAKASLDV 156 >gi|171058382|ref|YP_001790731.1| hypothetical protein Lcho_1699 [Leptothrix cholodnii SP-6] gi|226736416|sp|B1XY65|RIMP_LEPCP RecName: Full=Ribosome maturation factor rimP gi|170775827|gb|ACB33966.1| protein of unknown function DUF150 [Leptothrix cholodnii SP-6] Length = 183 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 70/175 (40%), Gaps = 14/175 (8%) Query: 26 SSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVER---------DDGNMTLRDCEELSQAI 76 ++ + M + V+ LL ++++R + + DCE +++ + Sbjct: 4 QQAVETTVTGMGYELVECERSARG--LLCVYIDRVPGSVYLTGPGEFVLVEDCELVTRQL 61 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 + +VEN+ + RLEVSSPG+DRP+ + DFLR+ G V + ++ G + Sbjct: 62 RYLFEVENV--DYSRLEVSSPGLDRPLRKVGDFLRFLGSDVDVTLKAPFQGRKNYRGLLR 119 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSYAG 191 E + + + + D + ARL+ + + G Sbjct: 120 QA-GDTPEQGFELVFQDGKEDKVLGFALDEVREARLVPVVDFKGRMRQTADAPQG 173 >gi|329919854|ref|ZP_08276792.1| hypothetical protein HMPREF9210_0185 [Lactobacillus iners SPIN 1401G] gi|328936944|gb|EGG33374.1| hypothetical protein HMPREF9210_0185 [Lactobacillus iners SPIN 1401G] Length = 158 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 69/152 (45%), Gaps = 7/152 (4%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILD 81 + VI P++ V I ++E N L+I+V+R+ + + + LS+++S LD Sbjct: 6 DKVIEVITPLVHARGDELVDIEYVKENNQNYLRIYVDREPDGIDIDEIATLSESVSEQLD 65 Query: 82 --VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 + + Y LE+SSPG++RP+ ++D+ + V + ++ G ++ Sbjct: 66 LINPDPLPDPYILELSSPGVERPIKTEADWCKAKNDYVHVGLYKKINGQKSYEGTLLDYD 125 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 LE + + +I I + + + R Sbjct: 126 MDKIILEI----KIKTQQQKITIPRNMIANIR 153 >gi|312873335|ref|ZP_07733388.1| conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d] gi|311091125|gb|EFQ49516.1| conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d] Length = 158 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 69/152 (45%), Gaps = 7/152 (4%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILD 81 + VI P++ V I ++E N L+I+V+R+ + + + LS+++S LD Sbjct: 6 DKVIEVITPLVHARGDELVDIEYVKENNQNYLRIYVDREPNGIDIDEIATLSESVSEQLD 65 Query: 82 --VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 + + Y LE+SSPG++RP+ ++D+ + V + ++ G ++ Sbjct: 66 LINPDPLPDPYILELSSPGVERPIKTEADWCKAKDDYVHVGLYKKINGQKSYEGTLLDYD 125 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 LE + + +I I + + + R Sbjct: 126 MDKIILEI----KIKTQQQKITIPRNMIANIR 153 >gi|227534930|ref|ZP_03964979.1| protein of hypothetical function DUF150 [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187686|gb|EEI67753.1| protein of hypothetical function DUF150 [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 150 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 71/152 (46%), Gaps = 8/152 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL--D 81 ++++++P++++ F + ++ L++++++ G +TL +C +S+A+S L Sbjct: 1 MTALVKPILDDHHFYLTDVEFVKEGGGWYLRVYIDK-TGGITLDECVMVSEALSEKLDAM 59 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + I Y LEVSSPG +RP+ ++D+ + G + + K+ G + Sbjct: 60 DPDPIPQQYFLEVSSPGAERPLKHETDYEQAVGDYIHVSLFKKLDGKKVFEGTLKELLPD 119 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 L + + K I + SARL Sbjct: 120 QLTLTVKDKSRKFDQ----VIDRQLIASARLA 147 >gi|332799220|ref|YP_004460719.1| Ribosome maturation factor rimP [Tepidanaerobacter sp. Re1] gi|332696955|gb|AEE91412.1| Ribosome maturation factor rimP [Tepidanaerobacter sp. Re1] Length = 157 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 73/153 (47%), Gaps = 11/153 (7%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + ++ +E F + + ++E N L+ ++++ G +T+ DC+ +S + +LD Sbjct: 8 KKLWNLGYKAVEAAGFELIDMEFVKESGNWYLRYYIDKP-GGITIDDCQTVSVEVGRLLD 66 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + ++I Y LEVSSPG++RP+ DFLR+ G V + GDK+ G + S Sbjct: 67 IADLIPCSYILEVSSPGLERPIKTDKDFLRYIGSFVEIKTFEKIGDKKVFTGILEDYSNN 126 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ N I + + SA+L Sbjct: 127 TVTVK---------NGECYLIPKEKISSAKLKF 150 >gi|260881110|ref|ZP_05403661.2| hypothetical protein MITSMUL_03619 [Mitsuokella multacida DSM 20544] gi|260849563|gb|EEX69570.1| hypothetical protein MITSMUL_03619 [Mitsuokella multacida DSM 20544] Length = 211 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 72/158 (45%), Gaps = 13/158 (8%) Query: 16 FGDMGLAGDISSVIQPVIEEMS-FRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + +++Q ++++ V ++E + L++++++ +G + + DC+ LS+ Sbjct: 62 MAKQQVEDAVEAIVQELLKDQDVIELVDAEYVKEHDWYLRVYIDK-EGGIDIEDCQALSE 120 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 + LD +++ Y LEVSSPGIDR + + DF R G V + K+ ++G+ Sbjct: 121 KLEEALDKGDVVPDSYILEVSSPGIDRVLRKPRDFTREQGKKVDVTLYAPREGKKLVVGE 180 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + G L + + I + RL Sbjct: 181 LTGFDGDAIEL-----------DGETKIPLADIAQVRL 207 >gi|260101366|ref|ZP_05751603.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] gi|260084818|gb|EEW68938.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] Length = 172 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 68/156 (43%), Gaps = 7/156 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAIS 77 + + VI+ +I+E V + ++EK L+I+V+R + + + LS+ +S Sbjct: 16 SKVVDLVRPVIETIIDEHGDMLVDMEYVKEKGQNYLRIYVDRQPNGIDIDEIAALSELVS 75 Query: 78 PILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + + Y LE+SSPG +RP+ ++D+ R V + DK+ G + Sbjct: 76 EKLDTIDPDPLPDPYVLELSSPGAERPITTEADWKRALNDYVHIGLYQKIDDKKVYEGTL 135 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 + LE + + ++ I + R Sbjct: 136 KYYNNDEIVLEVKDK----TRRKKLTIPRKLIAKIR 167 >gi|188577682|ref|YP_001914611.1| hypothetical protein PXO_01301 [Xanthomonas oryzae pv. oryzae PXO99A] gi|188522134|gb|ACD60079.1| YhbC family protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 176 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 12/144 (8%) Query: 38 FRSVQISLLEE-KNLLLQIFVE-----RDDGNMTLRDCEELSQAISPILDVENIIEGHYR 91 + + L L+++++ + + + + DCE +S+ +S LDVE+ I GHY Sbjct: 1 MELLGVEYLPAPGGATLRLYIDVPLAEQPERVINVDDCERVSREVSAQLDVEDPISGHYT 60 Query: 92 LEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRG 151 LEVSSPG+DRP+ F R G + L+ +++ G+I+ Sbjct: 61 LEVSSPGVDRPLFTLEQFARHAGESTKIVLKLAQDGRRRFQGEILRIDAEA------GAV 114 Query: 152 EKDMNELQIAISFDSLLSARLIVT 175 ++ + I FD++ AR++ Sbjct: 115 VFAIDGKDVQIGFDNIDKARILPD 138 >gi|329121256|ref|ZP_08249883.1| hypothetical protein HMPREF9083_0344 [Dialister micraerophilus DSM 19965] gi|327470190|gb|EGF15653.1| hypothetical protein HMPREF9083_0344 [Dialister micraerophilus DSM 19965] Length = 156 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 79/149 (53%), Gaps = 4/149 (2%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 + + ++IQPV+E+ V + + E+N +L+IF+++ DG + L DC+E+S + Sbjct: 1 MSHKEIESAVEALIQPVLEKKGIEVVDVEYVRERNWILRIFIDK-DGGVDLNDCQEISVS 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD---KQKLI 132 ++D ++I +Y LEVSSPGIDR + + DF+R+ V+ ++ + ++ Sbjct: 60 AGELIDKNDLISDNYMLEVSSPGIDRVLKKDKDFIRYKDSKVSVKLFAPVEELNLDKEFA 119 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIA 161 + G L + E +++ +I+ Sbjct: 120 AILNGLVNDEISLILDDGREIFLSKKKIS 148 >gi|255019835|ref|ZP_05291911.1| transcription termination protein NusA-like protein [Acidithiobacillus caldus ATCC 51756] gi|254970764|gb|EET28250.1| transcription termination protein NusA-like protein [Acidithiobacillus caldus ATCC 51756] Length = 176 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 49/156 (31%), Positives = 82/156 (52%), Gaps = 9/156 (5%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 GL + I M V + LL +++ LQ+F+E+D+G +T+ DC +S+ +S Sbjct: 27 GLEERLLEGIAEQAAAMGCGVVDVRLLRVGRSVTLQVFIEKDEGAVTIEDCAAVSRQLSV 86 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LDVEN I G YRLEVSSPG+DRP+ R++DF R+ G + E+ +++ G+++ Sbjct: 87 WLDVENPIAGAYRLEVSSPGLDRPLKREADFQRFVGALAEIELRGLRDGRRRWRGRLLLA 146 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 S L+ + + +L A+L+ Sbjct: 147 SPGSVALDVDGVRQ--------EFLLAEILKAKLVP 174 >gi|172036757|ref|YP_001803258.1| hypothetical protein cce_1842 [Cyanothece sp. ATCC 51142] gi|259585745|sp|B1WZP0|RIMP_CYAA5 RecName: Full=Ribosome maturation factor rimP gi|171698211|gb|ACB51192.1| DUF150-containing protein [Cyanothece sp. ATCC 51142] Length = 151 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 9/154 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L I + P++EEM V++ ++ +L++ + + +L DCE++S+A+ + Sbjct: 5 LIPQIIDLATPIVEEMGLDVVEVVFQTNKRPPVLRVDIRNPASDTSLNDCEQVSRALEAV 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD I+ G Y LE+SSPGI R + + DF+ + G V DK++ G++ G Sbjct: 65 LDETAIMPGAYVLEISSPGISRYLNSERDFIAFKGFEVNIATNPPYKDKKEWRGRLQGRD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 E +L ++ R IAI + +L Sbjct: 125 EKAVYLNRKGRA--------IAIPCAVITKVQLA 150 >gi|170077375|ref|YP_001734013.1| hypothetical protein SYNPCC7002_A0752 [Synechococcus sp. PCC 7002] gi|169885044|gb|ACA98757.1| conserved hypothetical protein [Synechococcus sp. PCC 7002] Length = 166 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L I + +P+ E+ V + +K +L+I V + L DCE S+ + P Sbjct: 18 LIPRIVTCAEPIAAELGLEVVDVVFQTNKKPPVLRIDVRNLSQDTGLEDCERFSRLLDPQ 77 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 L+ + II G Y LEVSSPG DR + +F+ + G V + D+++ G + Sbjct: 78 LEAQEIIPGAYVLEVSSPGTDRNLTTDREFIAFRGFPVRVKTYAPYKDQKEWCGTLRERD 137 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 E L + + IAI + + +L Sbjct: 138 EAAIHLNLKGKA--------IAIPRELVAKVQL 162 >gi|328953956|ref|YP_004371290.1| Ribosome maturation factor rimP [Desulfobacca acetoxidans DSM 11109] gi|328454280|gb|AEB10109.1| Ribosome maturation factor rimP [Desulfobacca acetoxidans DSM 11109] Length = 153 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 72/158 (45%), Gaps = 10/158 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQ 74 + G ++ +I PV++ V+ + +L++F+++ G ++L DC LS Sbjct: 1 MQPDDVTGRVTELILPVLQAHDVELVETEFVRAGRRYILRLFLDKP-GGISLEDCAYLSN 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 + ++DV ++I Y LEVSSPG+ RP+ + DF R+ G +V + G + G+ Sbjct: 60 LLGELIDVHDVIRHAYILEVSSPGLTRPIKKIEDFSRYAGRLVRITVRGGVGKRSLYRGE 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++G + AI + ARL Sbjct: 120 LLGLDGETVKV--------KEGSRVYAIPVKDIARARL 149 >gi|238852617|ref|ZP_04643027.1| conserved hypothetical protein [Lactobacillus gasseri 202-4] gi|282850816|ref|ZP_06260190.1| conserved hypothetical protein [Lactobacillus gasseri 224-1] gi|311110886|ref|ZP_07712283.1| SP14.3 protein [Lactobacillus gasseri MV-22] gi|259585807|sp|Q044C1|RIMP_LACGA RecName: Full=Ribosome maturation factor rimP gi|238834763|gb|EEQ26990.1| conserved hypothetical protein [Lactobacillus gasseri 202-4] gi|282557768|gb|EFB63356.1| conserved hypothetical protein [Lactobacillus gasseri 224-1] gi|311066040|gb|EFQ46380.1| SP14.3 protein [Lactobacillus gasseri MV-22] Length = 158 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 69/156 (44%), Gaps = 7/156 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQAIS 77 + ++ V+ P+ E V + ++EK L+I+V+R G + + + LS+ +S Sbjct: 2 TKVTELVADVVTPLAEARGDELVDVEYVKEKKQYYLRIYVDRRPGGIDIEEIANLSELVS 61 Query: 78 PILDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + Y LE+SSPG++RP+ + D+ R G + + ++ G + Sbjct: 62 EKLDELDPDPFPEPYILELSSPGLERPIKNEKDWERAKGSYIHVSLYQKIDGEKTYEGTL 121 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 ++ LE + +I I + S+R Sbjct: 122 KDLNQNQIVLEV----KIKTRRKEITIPRKVIASSR 153 >gi|313124032|ref|YP_004034291.1| ribosome maturation factor rimp [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280595|gb|ADQ61314.1| Ribosome maturation factor rimP [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 158 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 67/150 (44%), Gaps = 7/150 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQAISPIL--D 81 I I+PVI V + ++EK+ L+I+V++ + + ELS+ + L Sbjct: 8 ILEAIEPVIIGHDCELVDLEYVKEKSQYYLRIYVDKQPNGIDIETIAELSELVGEKLDSM 67 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + + Y LE+SSPG++RP+ ++ D+ + G + + ++ G ++ + Sbjct: 68 QPDPLPDPYILELSSPGLERPIKKEQDWEKAKGQYIHVGLYQKLEGEKVFEGHLLDLDDQ 127 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 LE + Q+ I + SAR Sbjct: 128 EIKLEI----KIKTRRKQLTIPRKQIASAR 153 >gi|297617184|ref|YP_003702343.1| hypothetical protein Slip_0999 [Syntrophothermus lipocalidus DSM 12680] gi|297145021|gb|ADI01778.1| protein of unknown function DUF150 [Syntrophothermus lipocalidus DSM 12680] Length = 153 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 72/159 (45%), Gaps = 10/159 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQ 74 G+ + +I+ +E + V + + +LQ+F+++ G + L C++ S+ Sbjct: 1 MKSKGVVERVEPIIERELEPVGIDVVDVQYKNQAGRWVLQVFIDKP-GGVDLDTCQQASE 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 I LD E+ I Y LEVSSPG+DR + + DF R+ G V ++ +++ G Sbjct: 60 IIGRALDWEDPIPHSYVLEVSSPGLDRVLKKDKDFERFTGKKVTVKVREPINNQKNFKGL 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 ++G + ++ + + + L RL+ Sbjct: 120 LLGLRDGKIMVDL--------GDRILEVPRTEALQVRLV 150 >gi|325677900|ref|ZP_08157542.1| hypothetical protein CUS_7307 [Ruminococcus albus 8] gi|324110454|gb|EGC04628.1| hypothetical protein CUS_7307 [Ruminococcus albus 8] Length = 183 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 3/157 (1%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAI 76 ++ + QP+ +E+ + + L++ +++ DG +T+ DCE ++ Sbjct: 12 KKNTVERVTELAQPLADELGLFLWDVRFEKEGATWYLRVLIDK-DGGVTMEDCENFTRPF 70 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG-DKQKLIGKI 135 + ILD E+ I Y E SPG+ R + + F G V ++ +++ I + Sbjct: 71 NKILDDEDPIAQSYVFECGSPGLGRELRKPIHFEVCIGDAVRVRLIRPDENGEREFIVGL 130 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +G + + + E + +L Sbjct: 131 VGYDDEEKVIACQTLDENGDGVENVQFRLSDCAFVKL 167 >gi|302342323|ref|YP_003806852.1| hypothetical protein Deba_0888 [Desulfarculus baarsii DSM 2075] gi|301638936|gb|ADK84258.1| protein of unknown function DUF150 [Desulfarculus baarsii DSM 2075] Length = 161 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 11/157 (7%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + +I+PV+ V++ E +L++FV+R G +TL DC +S+ +S + Sbjct: 12 LGRRLMELIEPVVRSEGLVLVELQWRPENAGQVLRLFVDRPAGGVTLDDCSLISRQVSDL 71 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG--DKQKLIGKIMG 137 LDVE+ I G YRLEVSSPG++R + +++ + G + I + L G+++G Sbjct: 72 LDVEDPIGGAYRLEVSSPGLERRLKSAREYVIFAGRMAKLVIRDDGEKSGNRVLHGRLLG 131 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + R ++ A L+V Sbjct: 132 LQGDDVLIEIDGRPTAT--------PLAQVVKANLMV 160 >gi|329667118|gb|AEB93066.1| hypothetical protein LJP_0738 [Lactobacillus johnsonii DPC 6026] Length = 158 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 69/156 (44%), Gaps = 7/156 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQAIS 77 + ++ V+ P+ E V + ++EK L+I+V+R G + + + LS+ +S Sbjct: 2 TKVTELVADVVTPLAEARGDELVDVEYVKEKKQYYLRIYVDRRPGGIDIEEIANLSELVS 61 Query: 78 PILDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + Y LE+SSPG++RP+ + D+ R G + + ++ G + Sbjct: 62 EKLDELDPDPFPEPYILELSSPGLERPIKNEKDWERAKGSYIHVSLYQKIDGEKTFEGTL 121 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 ++ LE + +I I + S+R Sbjct: 122 KDLNQDQIVLEV----KIKTRRKEITIPRKVIASSR 153 >gi|300812571|ref|ZP_07092988.1| conserved hypothetical protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496444|gb|EFK31549.1| conserved hypothetical protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 158 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 67/150 (44%), Gaps = 7/150 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPIL--D 81 I I+PVI V + ++EK+ L+I+V++ + + ELS+ + L Sbjct: 8 IQEAIEPVIIGHDCELVDLEYVKEKSQDYLRIYVDKQPNGIDIETIAELSELVGEKLDSM 67 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + + Y LE+SSPG++RP+ ++ D+ + G + + ++ G ++ + Sbjct: 68 QPDPLPDPYILELSSPGLERPIKKEQDWEKAKGQYIHVGLYQKLEGEKVFEGHLLDLDDQ 127 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 LE + Q+ I + SAR Sbjct: 128 EIKLEI----KIKTRRKQLTIPRKQIASAR 153 >gi|189485236|ref|YP_001956177.1| hypothetical protein TGRD_233 [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|259645130|sp|B1GZN4|RIMP_UNCTG RecName: Full=Ribosome maturation factor rimP gi|170287195|dbj|BAG13716.1| conserved hypothetical protein [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 151 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 65/155 (41%), Gaps = 9/155 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M +I ++ PV V + ++ + + +IF+++ D +T+ DCE +S Sbjct: 1 MRKVQEIEDLLAPVAAREKIEIVDVQYSKKAGDWVARIFIDK-DSGVTISDCENISCIFG 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD +I++ Y LE+SSPG R + + F R+ G +++ +G ++ Sbjct: 60 AFLDESDILKDSYVLEISSPGFKRVLKSEKSFRRFIGSKTRIRTFKPINNQRNFLGTLLN 119 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + + I F + A + Sbjct: 120 FDDGRIKIND-------VTNGVVEIEFSDIRKANI 147 >gi|42523052|ref|NP_968432.1| hypothetical protein Bd1545 [Bdellovibrio bacteriovorus HD100] gi|51316637|sp|Q6MMS8|RIMP_BDEBA RecName: Full=Ribosome maturation factor rimP gi|39575257|emb|CAE79425.1| conserved hypothetical protein [Bdellovibrio bacteriovorus HD100] Length = 174 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 10/160 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGN-MTLRDCEELSQAISPIL 80 + + V I + K L++F++R++ +++ DC +S+ +S IL Sbjct: 9 AKVEKIANDVAAAQGCVLYDIEFVGLGKGRTLRLFIDREEEGAISIEDCTNVSRGLSEIL 68 Query: 81 D--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG----DKQKLIGK 134 D E I G Y LEVS+PG+DR + + F + G V + + + +K Sbjct: 69 DADEEMIPGGEYNLEVSTPGLDRHLKKPWHFKKAIGKKVYIKTTKALESVGVEDKKWK-- 126 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 T E E+ + +++I I + + A+L+ Sbjct: 127 NAKTVEEVLESADEQGVRFVVKDVEIKIPYAMIDRAKLVF 166 >gi|160932905|ref|ZP_02080294.1| hypothetical protein CLOLEP_01746 [Clostridium leptum DSM 753] gi|156867979|gb|EDO61351.1| hypothetical protein CLOLEP_01746 [Clostridium leptum DSM 753] Length = 167 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 68/145 (46%), Gaps = 3/145 (2%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISP 78 G + + +P++++ + L+E L+++++R + +T+ DCE +S+AI Sbjct: 9 GTVEAVWDLCEPIVKDFGLELWDVRYLKEGAQWYLRVYIDRQE-GVTIEDCENVSRAIDE 67 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG-DKQKLIGKIMG 137 LD + ++ Y LEV SPG++R +VR F R+ G V +++ +++ G + Sbjct: 68 PLDRLDPVDQSYCLEVCSPGLERELVRPEHFQRFEGWPVMVKLIRPLDSGEREFNGVLGT 127 Query: 138 TSETGFFLEKEKRGEKDMNELQIAI 162 F L + + + Sbjct: 128 YENGVFDLWVNETDVISLAKKDTVF 152 >gi|295102729|emb|CBL00274.1| Uncharacterized protein conserved in bacteria [Faecalibacterium prausnitzii L2-6] Length = 161 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 35/130 (26%), Positives = 64/130 (49%), Gaps = 3/130 (2%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPIL 80 A + ++++PV+E M R + +E L++ ++R DG M C E+S A+ PIL Sbjct: 10 AQRVEALVRPVVEGMGLRLWDVVFEKEGPDWYLRVLIDR-DGTMDTDTCAEVSHALDPIL 68 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS-GDKQKLIGKIMGTS 139 D + I+ Y LEV SPG+ R + R + G + +++ + ++ G + G Sbjct: 69 DEADPIDQSYYLEVGSPGLGRKLTRPEHYEALKGEKIGVKLIRPTADGVREFAGILKGRE 128 Query: 140 ETGFFLEKEK 149 + +E E Sbjct: 129 GSTVTVETEN 138 >gi|322391411|ref|ZP_08064881.1| essential protein [Streptococcus peroris ATCC 700780] gi|321145837|gb|EFX41228.1| essential protein [Streptococcus peroris ATCC 700780] Length = 207 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + V++PVIE F V I + +++L IFV++ + +TL D +L++ ISP+ Sbjct: 55 IVELVREVVEPVIEA-PFELVDIEYGKIGSDMILSIFVDKPE-GITLNDTADLTEIISPV 112 Query: 80 LD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LE++SPG++RP+ K G + + + ++ G ++ Sbjct: 113 LDTIKPDPFPEQYFLEITSPGLERPLKTKEAVAGAVGKYIHVGLYQAIDKQKVFEGTLLS 172 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + K + I ++ + ARL V Sbjct: 173 FEEDELTMEYMDKTRKK----TVQIPYNLVSKARLAV 205 >gi|260495124|ref|ZP_05815253.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33] gi|260197567|gb|EEW95085.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33] Length = 156 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 77/155 (49%), Gaps = 11/155 (7%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I+ ++ P +EEM+ V + ++ ++IF+E +G++++ DC +LS I Sbjct: 7 IVEKITEIVNPFVEEMNLSLVDVEYVQDGAYWYIRIFIENLNGDLSIEDCSKLSSKIEDK 66 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 + E +IE + LEVSSPG++RP+ + D++R+ G + + DK++ I + Sbjct: 67 I--EKLIEHKFFLEVSSPGLERPLKKIEDYIRFTGEKITLHLKHKLDDKKQFKAIIKEVN 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +K+ +I I F+ + ++ Sbjct: 125 GDNIIFLIDKK--------EIEIKFNEIRKTNILF 151 >gi|326692689|ref|ZP_08229694.1| hypothetical protein LargK3_02896 [Leuconostoc argentinum KCTC 3773] Length = 158 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 75/162 (46%), Gaps = 14/162 (8%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGN-MTLRDCEELSQ 74 + +I+++I P++ E + ++ +E +L+I V++ D +T+ D + +Q Sbjct: 1 MANKVEQEITALITPILVEQNDLLWDLTYTKEGGQKVLRIMVDKPDHTFITMADITDFTQ 60 Query: 75 AISPILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWN--GHVVACEIVLSSGDKQK 130 A++ +LD + I Y L++SSPG DRP+ + + + + + ++K Sbjct: 61 AVNDLLDTVEPDPIPEAYLLDISSPGADRPLKQPWHYKWAQEADETILVALFAAKDGQKK 120 Query: 131 LIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 GK+ ++ G L + +++ FD + A L Sbjct: 121 WQGKVKSVTDDGIVL--------STAQGDLSLQFDEIAKAVL 154 >gi|313888257|ref|ZP_07821928.1| conserved hypothetical protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845660|gb|EFR33050.1| conserved hypothetical protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 153 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 10/157 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQ 74 L +I + + V EE+ + V I K+ LL IF+ + + + L DC ++S+ Sbjct: 1 MNKKELKKEIYPLAEEVAEELGYEIVDIEFQNGSKHDLLSIFIYKKE-GIDLNDCTDMSR 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 ++ LD I++ Y LE+SSPG+DRP+ K D+ R G+ V ++ K++ Sbjct: 60 SLEKKLDNLEILKNPYYLEISSPGLDRPLKTKDDYRRNIGNEVDVKLYAPIDGKKEFSFV 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 + + + + + + AI S+ S + Sbjct: 120 LDKYDDENVYCTLDGK--------EFAIPIKSISSMK 148 >gi|160892798|ref|ZP_02073588.1| hypothetical protein CLOL250_00329 [Clostridium sp. L2-50] gi|156865839|gb|EDO59270.1| hypothetical protein CLOL250_00329 [Clostridium sp. L2-50] Length = 142 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 77/148 (52%), Gaps = 9/148 (6%) Query: 28 VIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 ++ P+IE + V + ++ + L+I+ ++ +G +T+ DCE +++A+S +LD ++ I Sbjct: 1 MVLPIIEANNLELVDVEYVKEGSDYYLRIYADK-EGGITIGDCEIVNRAMSDLLDADDFI 59 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE 146 + Y LEVSSPG+ RP+ +++DF R G +V + + + G++ E + Sbjct: 60 KDAYILEVSSPGLTRPLKKENDFKRSIGKIVEIKTYTKIDNCKDFEGELTAYDEETVTIL 119 Query: 147 KEKRGEKDMNELQIAISFDSLLSARLIV 174 E E ++ I+ + RL Sbjct: 120 TED-------EKELKIARKDISMIRLAF 140 >gi|182683485|ref|YP_001835232.1| hypothetical protein SPCG_0515 [Streptococcus pneumoniae CGSP14] gi|225858390|ref|YP_002739900.1| hypothetical protein SP70585_0612 [Streptococcus pneumoniae 70585] gi|182628819|gb|ACB89767.1| hypothetical protein SPCG_0515 [Streptococcus pneumoniae CGSP14] gi|225720853|gb|ACO16707.1| conserved hypothetical protein [Streptococcus pneumoniae 70585] Length = 183 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + V++PVIE F V I + +++L IFV++ + +TL D +L++ ISP+ Sbjct: 31 IVELVREVVEPVIEA-PFELVDIEYGKIGSDMILSIFVDKPE-GITLNDTADLTEMISPV 88 Query: 80 LD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LE++SPG++RP+ K G + + + ++ G ++ Sbjct: 89 LDTIKPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLA 148 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + K + I + + ARL V Sbjct: 149 FEEDELTMEYMDKTRKK----TVQIPYSLVSKARLAV 181 >gi|104774215|ref|YP_619195.1| hypothetical protein Ldb1336 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514303|ref|YP_813209.1| hypothetical protein LBUL_1245 [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122274965|sp|Q049V1|RIMP_LACDB RecName: Full=Ribosome maturation factor rimP gi|122397110|sp|Q1G9P5|RIMP_LACDA RecName: Full=Ribosome maturation factor rimP gi|103423296|emb|CAI98137.1| Conserved hypothetical protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093618|gb|ABJ58771.1| hypothetical protein LBUL_1245 [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 158 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 67/150 (44%), Gaps = 7/150 (4%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPIL--D 81 I I+PVI V + ++EK+ L+I+V++ + + ELS+ + L Sbjct: 8 ILEAIEPVIIGHDCELVDLEYVKEKSQDYLRIYVDKQPNGIDIETIAELSELVGEKLDSM 67 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + + Y LE+SSPG++RP+ ++ D+ + G + + ++ G ++ + Sbjct: 68 QPDPLPDPYILELSSPGLERPIKKEQDWEKAKGQYIHVGLYQKLEGEKVFEGHLLDLDDQ 127 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 LE + Q+ I + SAR Sbjct: 128 EIKLEI----KIKTRRKQLTIPRKQIASAR 153 >gi|67923758|ref|ZP_00517222.1| Protein of unknown function DUF150 [Crocosphaera watsonii WH 8501] gi|67854385|gb|EAM49680.1| Protein of unknown function DUF150 [Crocosphaera watsonii WH 8501] Length = 151 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 1/147 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L I + P+ +EM V + ++ +L++ + G+ +L DCE++S+A+ I Sbjct: 5 LIPQIIDLATPIAQEMGLEIVDVVFQTNKRPPVLRVDIRNTIGDTSLNDCEKVSRALESI 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD I+ G Y LE+SSPGI R + + DF+ + G V DK++ G++ G Sbjct: 65 LDERAIMPGAYVLEISSPGISRYLSSERDFIAFKGFEVKVTTNPPYMDKKEWQGRLQGRD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDS 166 E +L ++ R + + Sbjct: 125 EKAVYLNRKGRAIAVPCSVITQVQLAD 151 >gi|291541941|emb|CBL15051.1| Uncharacterized protein conserved in bacteria [Ruminococcus bromii L2-63] Length = 159 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 72/151 (47%), Gaps = 9/151 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 + + QP++E + ++ + L++++++ + + + DCE +S+AI+ LD Sbjct: 12 KVWELCQPIVEGFGLSLWDVRYVKEGADRFLRVYIDKPE-GIDINDCENVSRAINGPLDE 70 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD-KQKLIGKIMGTSET 141 + IE Y LEV SPGI+R ++R F+++ G + +++ ++ G + S+ Sbjct: 71 LDPIEEAYCLEVCSPGIERELIRDEHFMQFIGADIMVKMLRPIDGIGREFKGVLKDYSDG 130 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +E E +I IS +L Sbjct: 131 KVTIED------HSGENEITISKKDAAWIKL 155 >gi|322387177|ref|ZP_08060787.1| hypothetical protein HMPREF9423_0185 [Streptococcus infantis ATCC 700779] gi|321141706|gb|EFX37201.1| hypothetical protein HMPREF9423_0185 [Streptococcus infantis ATCC 700779] Length = 183 Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + V++PVIE F V I + +++L IFV++ + +TL D +L++ ISP+ Sbjct: 31 IVELVREVVEPVIEA-PFELVDIEYGKIGSDMILSIFVDKPE-GITLNDTADLTEIISPV 88 Query: 80 LD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LE++SPG++RP+ K G + + + ++ G ++ Sbjct: 89 LDTIKPDPFPEQYFLEITSPGLERPLKTKEAVAGAVGKYIHVGLYQAIDKQKVFEGTLLS 148 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + K + I ++ + ARL V Sbjct: 149 FEEDELTMEYMDKTRKK----TVRIPYNLVSKARLAV 181 >gi|259585815|sp|A4G7S9|RIMP_HERAR RecName: Full=Ribosome maturation factor rimP Length = 161 Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 37/159 (23%), Positives = 77/159 (48%), Gaps = 16/159 (10%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVE-----RDDGNMTLRDCEELSQAISP 78 +S++I+ + M + V + L++++++ D G++T+ DCE+++ + Sbjct: 2 QLSALIEKTVVGMGYELVNFE--QAARGLVRVYIDFTPEDADKGSITVEDCEKVTHQLLH 59 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG---DKQKLIGKI 135 +L VEN + RLEVSSPG+DRP+ + SD++R+ G ++ L +++ G + Sbjct: 60 VLTVENA--NYERLEVSSPGLDRPLKKLSDYVRFAGAEALVKLRLPMPNAANRKSFQGIL 117 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 LE E + ++ + + A L+ Sbjct: 118 QEPVGETLALEFEG----NEGPAKLEFTLADVDKAHLVP 152 >gi|218439320|ref|YP_002377649.1| hypothetical protein PCC7424_2360 [Cyanothece sp. PCC 7424] gi|226701263|sp|B7KIU5|RIMP_CYAP7 RecName: Full=Ribosome maturation factor rimP gi|218172048|gb|ACK70781.1| protein of unknown function DUF150 [Cyanothece sp. PCC 7424] Length = 155 Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 71/153 (46%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L I + P+ E++ V++ ++ +L++ + + L DCE++S+++ Sbjct: 5 LIPQIIDLATPIAEKLGLEIVEVVFQTNKRPPVLRLDIRNLSSDTGLDDCEQMSRSLEAT 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD +I G Y LE+SSPGI R + +F+ + G V + ++++ G + G Sbjct: 65 LDATELIPGSYVLEISSPGISRQLTSDREFIAFKGFEVIVKTYTPYENQKEWRGNLQGRD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 E +L K+ R IAI + +L Sbjct: 125 EQAVYLNKKGRA--------IAIPRQLVAKVQL 149 >gi|259585811|sp|A6T0Z0|RIMP_JANMA RecName: Full=Ribosome maturation factor rimP Length = 161 Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 37/159 (23%), Positives = 75/159 (47%), Gaps = 16/159 (10%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVE-----RDDGNMTLRDCEELSQAISP 78 +S++I+ + M + V + L+++F++ D G +T+ DCE+++ + Sbjct: 2 QLSALIEKTVVGMGYELVNFE--QAARGLVRVFIDFTPEDADKGAITVEDCEKVTHQLLH 59 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG---DKQKLIGKI 135 +L VEN + RLEVSSPG+DRP+ + SD++R+ G ++ + +++ G + Sbjct: 60 VLTVENA--NYERLEVSSPGLDRPLKKLSDYVRFAGAEALVKLRMPMPNAANRKSFQGIL 117 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 LE E ++ + + A L+ Sbjct: 118 QEPVGETLALEFEGND----GPAKLEFTLADVDKAHLVP 152 >gi|307243344|ref|ZP_07525508.1| conserved hypothetical protein [Peptostreptococcus stomatis DSM 17678] gi|306493291|gb|EFM65280.1| conserved hypothetical protein [Peptostreptococcus stomatis DSM 17678] Length = 155 Score = 102 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 74/159 (46%), Gaps = 7/159 (4%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQA 75 +A + IQP +E + V + ++E L++ ++ + + L +CE++S+ Sbjct: 1 MKKNIAQRVEEKIQPSVEGFGYELVDVEYVKEAGVYYLRVIIDH-ENGIGLDECEKVSRE 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I+PILD E+ IE +Y LEV SPGIDR + R +F ++ G V ++ + D + Sbjct: 60 INPILDEEDYIEDNYFLEVCSPGIDRVLKRDKEFSKYAGKTVEVKLYKNDQDLKTKQ--- 116 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L+++ + + + + RL V Sbjct: 117 --FEAELRGLDQDGMVVVSIGDTEKKFDRKEIAQIRLAV 153 >gi|42519363|ref|NP_965293.1| hypothetical protein LJ1491 [Lactobacillus johnsonii NCC 533] gi|51316714|sp|Q74IS4|RIMP_LACJO RecName: Full=Ribosome maturation factor rimP gi|41583651|gb|AAS09259.1| hypothetical protein LJ_1491 [Lactobacillus johnsonii NCC 533] Length = 158 Score = 102 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 68/156 (43%), Gaps = 7/156 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQAIS 77 + ++ V+ P+ E V + ++EK L+I+V+R G + + + LS+ +S Sbjct: 2 TKVTELVADVVTPLAEARGDELVDVEYVKEKKQYYLRIYVDRRPGGIDIEEIANLSELVS 61 Query: 78 PILDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + Y LE+SSPG++RP+ + D+ R G + + ++ G + Sbjct: 62 EKLDELDPDPFPEPYILELSSPGLERPIKNEKDWERAKGSYIHVSLYQKIDGEKTFEGTL 121 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 ++ LE + I I + S+R Sbjct: 122 KDLNQDQIVLEV----KIKTRRKDITIPRKVIASSR 153 >gi|317051741|ref|YP_004112857.1| hypothetical protein Selin_1571 [Desulfurispirillum indicum S5] gi|316946825|gb|ADU66301.1| protein of unknown function DUF150 [Desulfurispirillum indicum S5] Length = 155 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 81/157 (51%), Gaps = 7/157 (4%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 + +S ++QP+++E++ + L+ +L++++++ +G ++L +CE +S Sbjct: 1 MDKERILRGVSELLQPIVQELALELFDVELINASGWILRVYLDK-EGGVSLDECERVSIE 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 + +LDVE+II Y LEVSSPG++R + ++DF ++ G + + + IG + Sbjct: 60 LGTLLDVEDIIGFRYTLEVSSPGVNRKLRHRADFEKYLGRLARIRTSEVLLNTKLHIGYL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 S+T + ++ RG I + + A L Sbjct: 120 ADISDTELTIREKDRGIL------IPVPLAIIEKANL 150 >gi|312143667|ref|YP_003995113.1| protein of unknown function DUF150 [Halanaerobium sp. 'sapolanicus'] gi|311904318|gb|ADQ14759.1| protein of unknown function DUF150 [Halanaerobium sp. 'sapolanicus'] Length = 156 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 39/143 (27%), Positives = 80/143 (55%), Gaps = 1/143 (0%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 +A ++ + P+ + V + L+ + +L++F+E +G +T+ +CE +S+A+S Sbjct: 6 KVADLVTEFVLPIAHNENLNLVDVEFLKEGSDWILRVFLENKEGELTIEECERVSRALSV 65 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 ILD E+ I+ Y LEVSSPG++RP+ + DF R+ G +++ + +++ IG + Sbjct: 66 ILDEEDPIDKSYILEVSSPGLERPLKTEEDFERFQGELISVKTFKKIDGQKEFIGILKAY 125 Query: 139 SETGFFLEKEKRGEKDMNELQIA 161 + ++ E D+++ IA Sbjct: 126 NNGQIKIDLRNGKEIDLDDNIIA 148 >gi|150021291|ref|YP_001306645.1| hypothetical protein Tmel_1413 [Thermosipho melanesiensis BI429] gi|259645126|sp|A6LMV9|RIMP_THEM4 RecName: Full=Ribosome maturation factor rimP gi|149793812|gb|ABR31260.1| protein of unknown function DUF150 [Thermosipho melanesiensis BI429] Length = 147 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 61/155 (39%), Gaps = 14/155 (9%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + + + Q + EE + + L+I ++ ++ +DCE +S+ + Sbjct: 2 KDIVSQVKDIAQKICEEFHLELFDVKYYNKSGRWFLEIIIDNPYDYISTKDCENVSRKLE 61 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD NII Y L VSSPG++RP+ DF R+ G + + IG I Sbjct: 62 FELDKINIIPNKYYLTVSSPGLNRPLRNVKDFERFTGKKAKIKTREN-----TYIGYIKN 116 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + E + + I F+ + A L Sbjct: 117 VVDNIITFETDGKF--------IEFKFEEIKKANL 143 >gi|169350437|ref|ZP_02867375.1| hypothetical protein CLOSPI_01205 [Clostridium spiroforme DSM 1552] gi|169292757|gb|EDS74890.1| hypothetical protein CLOSPI_01205 [Clostridium spiroforme DSM 1552] Length = 155 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 5/157 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 M L I +I+P+++ I +++K L+IFVE+++G + + C +S+ IS Sbjct: 1 MELLNKIKEMIEPILQSNDVYLDDIEYVQDKGEWYLRIFVEKNEGFLDMDTCVAVSEQIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD E+ I+G Y LEVSSPG+++P+ G V + ++ G I Sbjct: 61 QKLDEEDPIKGEYYLEVSSPGVEKPLKTFEQVKSSIGKYVYAKFYNPIAGLDEVEGFINS 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + K +++ ++++ RL V Sbjct: 121 IEDETIEFEYLVKNIKKKVKIE----YNNIKFIRLAV 153 >gi|269215360|ref|ZP_06159214.1| hypothetical protein HMPREF0762_00005 [Slackia exigua ATCC 700122] gi|269131216|gb|EEZ62290.1| hypothetical protein HMPREF0762_00005 [Slackia exigua ATCC 700122] Length = 157 Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 63/152 (41%), Gaps = 8/152 (5%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + ++P E V I ++ K ++++++ + + D I+ IL Sbjct: 6 EASLLAALEPRAIEEGIEIVTIEVVGSRKAPTIRVYIDT-EQGIVFDDIAAAQAWINEIL 64 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D + G Y LEVSSPGIDRP+ + F G V + + G ++G +E Sbjct: 65 DEIDPFPGAYTLEVSSPGIDRPLRTRGHFEAAVGEQVYATCSEPVDGRSRFSGTLLGVAE 124 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G + ++ ++ + F + A + Sbjct: 125 DGGAIRL------SVDGDEVVLPFSIIKRAHI 150 >gi|237739229|ref|ZP_04569710.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31] gi|229422837|gb|EEO37884.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31] Length = 156 Score = 101 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 77/158 (48%), Gaps = 11/158 (6%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAI 76 + + I+ ++ P +EEM+ V + L++ +++F+E +G++++ DC +LS I Sbjct: 4 NSQIIEKITKIVNPFVEEMNLSLVDVEYLQDGGYWYVRVFIENLNGDLSIEDCSKLSSKI 63 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 VE +IE + LEVSSPG++R + + D++R+ G + + DK++ I Sbjct: 64 ED--KVEELIEHKFFLEVSSPGLERALKKLEDYIRFTGEKITLHLKHKLNDKKQFKAVIK 121 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +K+ ++ I F + A ++ Sbjct: 122 EVKGDNIVFLIDKK--------EVEIEFKEIRKANILF 151 >gi|157363141|ref|YP_001469908.1| hypothetical protein Tlet_0274 [Thermotoga lettingae TMO] gi|166988603|sp|A8F3W0|RIMP_THELT RecName: Full=Ribosome maturation factor rimP gi|157313745|gb|ABV32844.1| protein of unknown function DUF150 [Thermotoga lettingae TMO] Length = 152 Score = 101 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 74/159 (46%), Gaps = 12/159 (7%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELS 73 + + + V+ ++ ++ I+L E+ +L++ ++ + +++R CE +S Sbjct: 1 MILVKKIIDKLRPVVIDILSQLGLELFDITLRRERRKLVLRVVIDDPENYVSIRQCEIVS 60 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 I LD ++I+ Y LEVSSPG+DRP+ D+ R+ G + + + L+G Sbjct: 61 SQIGNYLDEADLIDSSYILEVSSPGLDRPLREMKDYNRFVGRLAKIWLKDG----KVLVG 116 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 I T+E +E + I SFD + +L Sbjct: 117 NIKETTENTVSIELKN-------GEIITFSFDQIKKGKL 148 >gi|259645133|sp|B1XI06|RIMP_SYNP2 RecName: Full=Ribosome maturation factor rimP Length = 153 Score = 101 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L I + +P+ E+ V + +K +L+I V + L DCE S+ + P Sbjct: 5 LIPRIVTCAEPIAAELGLEVVDVVFQTNKKPPVLRIDVRNLSQDTGLEDCERFSRLLDPQ 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 L+ + II G Y LEVSSPG DR + +F+ + G V + D+++ G + Sbjct: 65 LEAQEIIPGAYVLEVSSPGTDRNLTTDREFIAFRGFPVRVKTYAPYKDQKEWCGTLRERD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 E L + + IAI + + +L Sbjct: 125 EAAIHLNLKGKA--------IAIPRELVAKVQL 149 >gi|268319260|ref|YP_003292916.1| hypothetical protein FI9785_775 [Lactobacillus johnsonii FI9785] gi|262397635|emb|CAX66649.1| conserved hypothetical protein [Lactobacillus johnsonii FI9785] Length = 158 Score = 101 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 67/156 (42%), Gaps = 7/156 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQAIS 77 + ++ V+ P+ E V + ++EK L+I+V+R + + + LS+ +S Sbjct: 2 TKVTELVADVVTPLAEARGDELVDVEYVKEKKQYYLRIYVDRRPVGIDIEEIANLSELVS 61 Query: 78 PILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + Y LE+SSPG++RP+ + D+ R G + + ++ G + Sbjct: 62 EKLDKLDPDPFPEPYILELSSPGLERPIKNEKDWERAKGSYIHVSLYQKIDGEKTFEGTL 121 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 ++ LE + I I + S+R Sbjct: 122 KDLNQDQIVLEV----KIKTRRKDITIPRKVIASSR 153 >gi|320530107|ref|ZP_08031177.1| hypothetical protein HMPREF9555_01262 [Selenomonas artemidis F0399] gi|320137540|gb|EFW29452.1| hypothetical protein HMPREF9555_01262 [Selenomonas artemidis F0399] Length = 149 Score = 101 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 72/157 (45%), Gaps = 13/157 (8%) Query: 17 GDMGLAGDISSVIQPVI-EEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 + + +++ ++ + V + + E++ L++++++ +G + + DC LS+ Sbjct: 1 MSAKIEERVEEIVRDLLPVQPELELVDVEYVRERDWYLRVYIDK-EGGIDIEDCRMLSEH 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 + +LD E+ I Y LEVSSPG+DR + + DF R +G V + K+ L G + Sbjct: 60 LEEVLDREDFISDAYILEVSSPGLDRVLRKARDFEREHGKRVDVALYAPLDGKKNLTGAL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G L+ + + I + + RL Sbjct: 120 TGYDGNVLILDDD-----------VRIPMEQVSQVRL 145 >gi|323466336|gb|ADX70023.1| Ribosome maturation factor rimP [Lactobacillus helveticus H10] Length = 172 Score = 101 bits (251), Expect = 7e-20, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 67/156 (42%), Gaps = 7/156 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAIS 77 + V++ +I+E V + ++EK L+I+V+R + + + LS+ +S Sbjct: 16 SKVVDLARPVVETIIDEHGDMLVDMEYVKEKGQNYLRIYVDRQPNGIDIDEIAALSELVS 75 Query: 78 PILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + + Y LE+SSPG +RP+ ++D+ R V + DK+ G + Sbjct: 76 EKLDTIDPDPLPDPYVLELSSPGAERPIKTEADWKRALNDYVHIGLYQKIDDKKVYEGTL 135 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 + LE + + ++ I + R Sbjct: 136 KYYNNDEIVLEVKDK----TRRKKLTIPRKLIAKIR 167 >gi|331265776|ref|YP_004325406.1| hypothetical protein SOR_0379 [Streptococcus oralis Uo5] gi|326682448|emb|CBZ00065.1| conserved hypothetical protein [Streptococcus oralis Uo5] Length = 175 Score = 101 bits (251), Expect = 7e-20, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 73/157 (46%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + V++PVI+ F V I + +++L IFV++ + +TL D +L++ ISP+ Sbjct: 23 IVELVREVVEPVIQA-PFELVDIEYGKIGSDMILSIFVDKPE-GITLNDTADLTEIISPV 80 Query: 80 LD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LE++SPG++RP+ K G + + + ++ G ++ Sbjct: 81 LDTIKPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLVS 140 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + K + I + + ARL V Sbjct: 141 FEGDELTMEYMNKTRKK----TVQIPYSLVSKARLAV 173 >gi|294783787|ref|ZP_06749111.1| conserved hypothetical protein [Fusobacterium sp. 1_1_41FAA] gi|294480665|gb|EFG28442.1| conserved hypothetical protein [Fusobacterium sp. 1_1_41FAA] Length = 156 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAI 76 + + I+ ++ P +EEM+ V + L++ ++IF+E +G +++ DC +LS I Sbjct: 4 NSQIIEKITKIVNPFVEEMNLSLVDVEYLQDGGYWYVRIFIENLNGELSIEDCSKLSSKI 63 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 VE +IE + LEVSSPG++R + + D++R+ G + + DK++ I Sbjct: 64 ED--KVEELIEHKFFLEVSSPGLERALKKLEDYIRFTGEKITLHLKHKLNDKKQFKAVIK 121 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +K+ ++ I F + A ++ Sbjct: 122 EVKGDNIVFLIDKK--------EVEIEFKEIRKANILF 151 >gi|329915248|ref|ZP_08276236.1| clustered with transcription termination protein NusA [Oxalobacteraceae bacterium IMCC9480] gi|327544953|gb|EGF30294.1| clustered with transcription termination protein NusA [Oxalobacteraceae bacterium IMCC9480] Length = 161 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 71/159 (44%), Gaps = 16/159 (10%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-----MTLRDCEELSQAISP 78 + +I+ + M + V + LL+++++ +T+ DCE+++ + Sbjct: 2 QLLELIEKTVVGMEYELVDFE--QAARGLLRVYIDFPPEQAERGMITVEDCEKVTHQLLH 59 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD---KQKLIGKI 135 +L VEN + + RLEVSSPG+DRP+ + +D+LR+ G ++ + ++ G + Sbjct: 60 VLTVENAV--YERLEVSSPGLDRPLKKLADYLRFAGMEAIVKLRMPMPGAANRKSFQGIL 117 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 LE E + + + + A L+ Sbjct: 118 HAPEGDQIKLEFEGKE----GSAMLEFTLADVDKAHLVP 152 >gi|261367203|ref|ZP_05980086.1| hypothetical protein SUBVAR_05255 [Subdoligranulum variabile DSM 15176] gi|282570801|gb|EFB76336.1| hypothetical protein SUBVAR_05255 [Subdoligranulum variabile DSM 15176] Length = 163 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 69/162 (42%), Gaps = 10/162 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISP 78 G A + ++++P +E M R + +E L++ ++RD+ + CE +S+AI P Sbjct: 9 GAAKTVETLVRPTVEGMGLRLWDVRFEKEGPDWFLRVLIDRDE-PLDTDTCEAVSRAIDP 67 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG-DKQKLIGKIMG 137 ILD + I+ Y LEV SPG+ R + R + G A ++ ++ + G + G Sbjct: 68 ILDEADPIDQSYYLEVGSPGLGRRLTRPEHYEALRGQKCAAHLIRPDEAGRRDVAGILQG 127 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELL 179 G + E + +L ++L Sbjct: 128 LDGEGNVTLVDG-------EETYTFPVKAAGYVKLCDDEDLF 162 >gi|169824467|ref|YP_001692078.1| hypothetical protein FMG_0770 [Finegoldia magna ATCC 29328] gi|303233823|ref|ZP_07320477.1| conserved hypothetical protein [Finegoldia magna BVS033A4] gi|226708072|sp|B0S1E8|RIMP_FINM2 RecName: Full=Ribosome maturation factor rimP gi|167831272|dbj|BAG08188.1| conserved hypothetical protein associated with Nus operon [Finegoldia magna ATCC 29328] gi|302495257|gb|EFL55009.1| conserved hypothetical protein [Finegoldia magna BVS033A4] Length = 154 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 40/162 (24%), Positives = 74/162 (45%), Gaps = 9/162 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQ 74 L +++ + P+I++ + +L ++E+DDG +++ DCE ++ Sbjct: 1 MNKKYLRDLMNNDLSPLIKDTGIEFYDVEYSNNNGKNILTFYIEKDDGLISIDDCELINN 60 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 IS LD + I Y LE++S I P R DF + G+VV + K++ G Sbjct: 61 KISDKLDEIDPISDPYYLEIASVDITTPFTRDKDFKKNLGNVVIVNLYQKLDSKKEFKGI 120 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 + ++T LE EK+ +I I ++ S +L + D Sbjct: 121 LTDFNDTEISLELEKK--------EIKIERSNISSIKLSLFD 154 >gi|170288838|ref|YP_001739076.1| hypothetical protein TRQ2_1046 [Thermotoga sp. RQ2] gi|281412458|ref|YP_003346537.1| protein of unknown function DUF150 [Thermotoga naphthophila RKU-10] gi|226734063|sp|B1LAP5|RIMP_THESQ RecName: Full=Ribosome maturation factor rimP gi|170176341|gb|ACB09393.1| protein of unknown function DUF150 [Thermotoga sp. RQ2] gi|281373561|gb|ADA67123.1| protein of unknown function DUF150 [Thermotoga naphthophila RKU-10] Length = 150 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 13/160 (8%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQ 74 + + + + + EE + E + +L+I ++ G +++RDCE S+ Sbjct: 1 MFEEMILEKVRKEAERIAEEQGLEIFDVQYRRESRGWILRIIIDNPMGYVSVRDCELFSR 60 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 + LD E++IE Y LEVSSPG+DRP+ D++R+ G + + IG+ Sbjct: 61 EMERFLDREDLIEHSYTLEVSSPGLDRPLRGPRDYVRFTGKLAKIVTKDG----KTFIGR 116 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 I + + + + I+ D + A L V Sbjct: 117 IESFVDGTITISD--------GKKKYEINIDDVKRANLEV 148 >gi|253995582|ref|YP_003047646.1| hypothetical protein Mmol_0209 [Methylotenera mobilis JLW8] gi|253982261|gb|ACT47119.1| protein of unknown function DUF150 [Methylotenera mobilis JLW8] Length = 161 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 82/166 (49%), Gaps = 26/166 (15%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDG-----NMTLRDCEELSQAIS 77 D+ ++I+ + ++ + V + + + LL++F+++ + ++ + DC +S + Sbjct: 2 QDLQTLIEKSVSQLGYELVDLEISN-RGKLLRVFIDKQNPADSKDSVNIDDCVLVSNQLG 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD---------- 127 +L VE+ I + RLEVSSPG+DR + +++D++R+ G V+ ++ + D Sbjct: 61 NLLAVEHEI-DYDRLEVSSPGMDRVLKKEADYVRFVGERVSIKLRVGIKDEGPNATETTL 119 Query: 128 -KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ +G I G + LE E ++ ++ ARL Sbjct: 120 PRKTFLGLIQGVEDGHLLLEFEGF--------TYKMALSNIDKARL 157 >gi|159162465|pdb|1IB8|A Chain A, Solution Structure And Function Of A Conserved Protein Sp14.3 Encoded By An Essential Streptococcus Pneumoniae Gene Length = 164 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + V++PVIE F V I + +++L IFV++ + +TL D +L++ ISP+ Sbjct: 10 IVELVREVVEPVIEA-PFELVDIEYGKIGSDMILSIFVDKPE-GITLNDTADLTEMISPV 67 Query: 80 LD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LE++SPG++RP+ K G + + + ++ G ++ Sbjct: 68 LDTIKPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLA 127 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + K + I + + ARL V Sbjct: 128 FEEDELTMEYMDKTRKK----TVQIPYSLVSKARLAV 160 >gi|306824617|ref|ZP_07457962.1| conserved hypothetical protein [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|315611733|ref|ZP_07886655.1| conserved hypothetical protein [Streptococcus sanguinis ATCC 49296] gi|304433185|gb|EFM36156.1| conserved hypothetical protein [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|315316148|gb|EFU64178.1| conserved hypothetical protein [Streptococcus sanguinis ATCC 49296] Length = 175 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 73/157 (46%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + V++PVI+ F V I + +++L IFV++ + +TL D +L++ ISP+ Sbjct: 23 IVELVREVVEPVIQA-PFELVDIEYGKIGSDMILSIFVDKPE-GITLNDTADLTEIISPV 80 Query: 80 LD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LE++SPG++RP+ K G + + + ++ G ++ Sbjct: 81 LDTIKPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLVS 140 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + K + I + + ARL V Sbjct: 141 FEGDELTMEYMDKTRKK----TVQIPYSLVSKARLAV 173 >gi|168492709|ref|ZP_02716852.1| conserved hypothetical protein [Streptococcus pneumoniae CDC3059-06] gi|183576817|gb|EDT97345.1| conserved hypothetical protein [Streptococcus pneumoniae CDC3059-06] Length = 159 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + V++PVIE F V I + +++L IFV++ + +TL D +L++ ISP+ Sbjct: 7 IVELVREVVEPVIEA-PFELVDIEYGKIGSDMILSIFVDKPE-GITLNDTADLTEIISPV 64 Query: 80 LD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LE++SPG++RP+ K G + + + ++ G ++ Sbjct: 65 LDTIKPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLA 124 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E G +E + K + I + + ARL V Sbjct: 125 FEEDGLTMEYMDKTRKK----TVQIPYSLVSKARLAV 157 >gi|117927004|ref|YP_867621.1| hypothetical protein Mmc1_3730 [Magnetococcus sp. MC-1] gi|189040289|sp|A0LE22|RIMP_MAGSM RecName: Full=Ribosome maturation factor rimP gi|117610760|gb|ABK46215.1| protein of unknown function DUF150 [Magnetococcus sp. MC-1] Length = 185 Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 74/168 (44%), Gaps = 19/168 (11%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVER------DDGNMTLRDCEE 71 +A + ++ + V++ E ++++ ++ + +++L +C Sbjct: 25 SDIAQKVEALAIQAAKTEDCEVVEVIYRREGGVYVVRVAADKLPDDQGQERHISLDECGS 84 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD---- 127 +S+ IS +LDV ++I Y LEVSSPGI+RP+++ DF R+ G +V Sbjct: 85 ISRQISSLLDVHDVIPNAYHLEVSSPGIERPLIKDGDFTRFAGKLVEIRTYQPMDTESGP 144 Query: 128 KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 ++K G ++G E + ++ I ++ + A L Sbjct: 145 RKKFRGTLLGLQEAMVVV--------AEANGEVRIPWEQVAKAHLTFD 184 >gi|227495146|ref|ZP_03925462.1| protein of hypothetical function DUF150 [Actinomyces coleocanis DSM 15436] gi|226831598|gb|EEH63981.1| protein of hypothetical function DUF150 [Actinomyces coleocanis DSM 15436] Length = 168 Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats. Identities = 39/163 (23%), Positives = 74/163 (45%), Gaps = 10/163 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN--MTLRDCEELS 73 + + ++PV++ + + E +++I V+ ++G ++ D +E+S Sbjct: 1 MSRTAIEEKVLDCVEPVVKAQGLFLEDVKVSERSETVVRIIVDLEEGTYLVSSDDLQEVS 60 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 IS LD + IE Y LE+S+PG +R + + R +V ++ S L G Sbjct: 61 WKISEALDAADPIEQAYTLEISTPGAERKLHTPRHYRRSLNRLVEIKLADKSE----LRG 116 Query: 134 KIMGTSETGFFLEKE----KRGEKDMNELQIAISFDSLLSARL 172 I E+ LE+E K G K + +SF+++ AR+ Sbjct: 117 FIREVGESELTLEEEAKAPKPGMKPKPGKLVTVSFENISKARV 159 >gi|227892602|ref|ZP_04010407.1| protein of hypothetical function DUF150 [Lactobacillus ultunensis DSM 16047] gi|227865587|gb|EEJ73008.1| protein of hypothetical function DUF150 [Lactobacillus ultunensis DSM 16047] Length = 172 Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 67/156 (42%), Gaps = 7/156 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAIS 77 + + V++ +I+E V + + EK L+I+V+R+ + + + LS+ +S Sbjct: 16 SKVIDLVRPVVESIIDEHGDMLVDMEYVTEKGKKYLRIYVDREPDGIDIDEIAALSELVS 75 Query: 78 PILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + Y LE+SSPG +RP+ +D+ R + + DK+ G + Sbjct: 76 EKLDSLNPDPFPEPYVLELSSPGAERPIKTAADWKRALNDYIHIGLYQKVEDKKVYEGTL 135 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 ++ LE + + + + + + R Sbjct: 136 KSYNDDEIVLEIKDK----TRRKTLTVPRKLIANVR 167 >gi|260654722|ref|ZP_05860210.1| hypothetical protein GCWU000246_00656 [Jonquetella anthropi E3_33 E1] gi|260630437|gb|EEX48631.1| hypothetical protein GCWU000246_00656 [Jonquetella anthropi E3_33 E1] Length = 173 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 76/155 (49%), Gaps = 8/155 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 L G+++++++PV+ E+ +R + L E ++ +++F++ + +T DCE +S+AI P Sbjct: 6 PALRGELTALLKPVVVELGYRWEGLQLEEIGSMTVRVFIDGPN-GVTADDCEVVSKAIDP 64 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +L+ Y LEVSSPG++R + D+ R+ G ++L G + Sbjct: 65 LLEGAMADSNRYYLEVSSPGLERFLFELDDYRRFIGETARIRFHGEGSHIKRLTGVVEAV 124 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 E E R E AI F+ ++ L+ Sbjct: 125 DE-------EGRVTIHTEEETAAIPFEDIVEGSLV 152 >gi|237734615|ref|ZP_04565096.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229382435|gb|EEO32526.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 167 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 77/157 (49%), Gaps = 5/157 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 M L I ++I+P++E I L+E L+IFVE+++G++ + C +S+AIS Sbjct: 13 MELLDTIKTLIKPILENNDVYLDDIEYLQENGEWYLRIFVEKNEGSLDMDTCVAVSEAIS 72 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +D E+ I+G Y LEVSSPG+++P+ G V + + + ++ G I Sbjct: 73 LKMDEEDPIKGEYYLEVSSPGVEKPLKTFEQVKASVGKYVYAKFINPTAGMDEVEGFIKT 132 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + K +I I + ++ RL V Sbjct: 133 IEDETIEFEYLVKNIKK----RIKIDYSNIKFIRLAV 165 >gi|148270199|ref|YP_001244659.1| hypothetical protein Tpet_1066 [Thermotoga petrophila RKU-1] gi|166977875|sp|A5ILL0|RIMP_THEP1 RecName: Full=Ribosome maturation factor rimP gi|147735743|gb|ABQ47083.1| protein of unknown function DUF150 [Thermotoga petrophila RKU-1] Length = 150 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 13/160 (8%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQ 74 + + + + + EE + E + +L+I ++ G +++RDCE S+ Sbjct: 1 MFEEMILEKVRKEAERIAEEQGLEIFDVQYRRESRGWVLRIIIDNPVGYVSVRDCELFSR 60 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 I LD E++IE Y LEVSSPG+DRP+ D++R+ G + + IG+ Sbjct: 61 EIERFLDREDLIEHSYTLEVSSPGLDRPLRGPKDYVRFTGKLAKIVTKDG----KTFIGR 116 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 I + + EKR I+ D + A L V Sbjct: 117 IESFVDGTITISDEKRK--------YEINIDDVKRANLEV 148 >gi|257439269|ref|ZP_05615024.1| protein associated with NUS operon [Faecalibacterium prausnitzii A2-165] gi|257198311|gb|EEU96595.1| protein associated with NUS operon [Faecalibacterium prausnitzii A2-165] Length = 163 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 69/161 (42%), Gaps = 11/161 (6%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRD-CEELSQAISPI 79 A + ++++P +E M R + +E L++ +++ DG D C ++S A+ PI Sbjct: 10 AQRVEALVRPTVEGMGLRLWDVVFEKEGPDWYLRVLIDKTDGTTMDTDTCADVSHALDPI 69 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG-DKQKLIGKIMGT 138 LD + IE Y LEV SPG+ R + R + G V+ + ++ ++ G + Sbjct: 70 LDEADPIEQSYYLEVGSPGLGRKLTRPEHYEAVQGQKVSVRLYRANENGVKEFSGLLTSR 129 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELL 179 LE + ++ + RL ++L Sbjct: 130 EGNTITLE--------GPAGPMQFELSAVSTVRLCDDEDLF 162 >gi|134095612|ref|YP_001100687.1| hypothetical protein HEAR2435 [Herminiimonas arsenicoxydans] gi|133739515|emb|CAL62566.1| Conserved hypothetical protein [Herminiimonas arsenicoxydans] Length = 172 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 37/159 (23%), Positives = 77/159 (48%), Gaps = 16/159 (10%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVE-----RDDGNMTLRDCEELSQAISP 78 +S++I+ + M + V + L++++++ D G++T+ DCE+++ + Sbjct: 13 QLSALIEKTVVGMGYELVNFE--QAARGLVRVYIDFTPEDADKGSITVEDCEKVTHQLLH 70 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG---DKQKLIGKI 135 +L VEN + RLEVSSPG+DRP+ + SD++R+ G ++ L +++ G + Sbjct: 71 VLTVENA--NYERLEVSSPGLDRPLKKLSDYVRFAGAEALVKLRLPMPNAANRKSFQGIL 128 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 LE E + ++ + + A L+ Sbjct: 129 QEPVGETLALEFEG----NEGPAKLEFTLADVDKAHLVP 163 >gi|262066536|ref|ZP_06026148.1| conserved hypothetical protein [Fusobacterium periodonticum ATCC 33693] gi|291379770|gb|EFE87288.1| conserved hypothetical protein [Fusobacterium periodonticum ATCC 33693] Length = 156 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAI 76 + + I+ ++ P +EEM+ V + L++ +++F+E +G +++ DC +LS I Sbjct: 4 NSQIIEKITKIVNPFVEEMNLSLVDVEYLQDGGYWYVRVFIENLNGELSIEDCSKLSSKI 63 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 VE +IE + LEVSSPG++R + + D++R+ G + + DK++ I Sbjct: 64 EDR--VEELIEHKFFLEVSSPGLERALKKLEDYIRFTGEKITLHLKHKMNDKKQFKAVIK 121 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +K+ ++ I F + A ++ Sbjct: 122 EVKGDNIVFLIDKK--------EVEIEFKEIRKANILF 151 >gi|322386002|ref|ZP_08059642.1| protein of hypothetical function DUF150 [Streptococcus cristatus ATCC 51100] gi|321269985|gb|EFX52905.1| protein of hypothetical function DUF150 [Streptococcus cristatus ATCC 51100] Length = 164 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + VI+P I+E + V I + + +L +FV++ + +T+ D +L+ ISP+ Sbjct: 12 IVELVREVIEPAIQE-PYELVDIEYGKMGGDYVLSVFVDKPE-GITVNDTADLTDIISPL 69 Query: 80 LD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LEV+SPG++RP+ K G + + + + G ++G Sbjct: 70 LDSIKPDPFPDQYFLEVTSPGLERPLKTKEAVAAAVGSYIHVSLYKALDKNKVFEGTLLG 129 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + +E + K ++ I ++ + ARL V Sbjct: 130 FEDDVLLMEYMDKTRKK----EVEIPYNLVSKARLAV 162 >gi|300813715|ref|ZP_07094035.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512172|gb|EFK39352.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 153 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 10/159 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQ 74 I + Q EE+ + V I + K+ LL IF+ + + + L DC ++S Sbjct: 1 MDKKSFKNQIFKIAQVSAEELGYEIVDIEYQKGNKHDLLSIFIFKKE-GIDLDDCTKMSH 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 I LD I+ Y LE+SSPG+DRP+ K D+ R + V ++ K++ +G Sbjct: 60 NIEKNLDNLEILTRPYYLEISSPGLDRPIKTKDDYRRNLENEVEVKLYGPYNGKKEYVGI 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + +E + E I I ++ S + + Sbjct: 120 LKDYNEHNVIICVEND--------NIEIPIKNISSMKQV 150 >gi|168482792|ref|ZP_02707744.1| conserved hypothetical protein [Streptococcus pneumoniae CDC1873-00] gi|303260041|ref|ZP_07346014.1| hypothetical protein CGSSp9vBS293_01125 [Streptococcus pneumoniae SP-BS293] gi|303261225|ref|ZP_07347173.1| hypothetical protein CGSSp14BS292_07790 [Streptococcus pneumoniae SP14-BS292] gi|303263890|ref|ZP_07349811.1| hypothetical protein CGSSpBS397_04757 [Streptococcus pneumoniae BS397] gi|303267074|ref|ZP_07352945.1| hypothetical protein CGSSpBS457_10002 [Streptococcus pneumoniae BS457] gi|303269289|ref|ZP_07355063.1| hypothetical protein CGSSpBS458_08806 [Streptococcus pneumoniae BS458] gi|172043720|gb|EDT51766.1| conserved hypothetical protein [Streptococcus pneumoniae CDC1873-00] gi|302637359|gb|EFL67846.1| hypothetical protein CGSSp14BS292_07790 [Streptococcus pneumoniae SP14-BS292] gi|302638736|gb|EFL69198.1| hypothetical protein CGSSpBS293_01125 [Streptococcus pneumoniae SP-BS293] gi|302641186|gb|EFL71559.1| hypothetical protein CGSSpBS458_08806 [Streptococcus pneumoniae BS458] gi|302643402|gb|EFL73678.1| hypothetical protein CGSSpBS457_10002 [Streptococcus pneumoniae BS457] gi|302646295|gb|EFL76521.1| hypothetical protein CGSSpBS397_04757 [Streptococcus pneumoniae BS397] Length = 175 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + V++PVIE F V I + +++L IFV++ + +TL D +L++ ISP+ Sbjct: 23 IVELVREVVEPVIEA-PFELVDIEYGKIGSDMILSIFVDKPE-GITLNDTADLTEMISPV 80 Query: 80 LD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LE++SPG++RP+ K G + + + ++ G ++ Sbjct: 81 LDTIKPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLA 140 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + K + I + + ARL V Sbjct: 141 FEEDELTMEYMDKTRKK----TVQIPYSLVSKARLAV 173 >gi|282882028|ref|ZP_06290669.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] gi|281298058|gb|EFA90513.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] Length = 153 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 68/159 (42%), Gaps = 10/159 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQ 74 I + Q EE+ + V I + K+ LL IF+ + + + L DC +S Sbjct: 1 MDKKSFKNQIFKIAQVSAEELGYEIVDIEYQKGNKHDLLSIFIFKKE-GIDLDDCTMMSH 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 I LD I+ Y LE+SSPG+DRP+ K D+ R + V ++ K++ +G Sbjct: 60 NIEKNLDNLEILSRPYYLEISSPGLDRPIKTKDDYRRNLENEVEVKLYGPYNGKKEYVGI 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + +E + E I I ++ S + + Sbjct: 120 LKDYNEHNVIICVEND--------NIEIPIKNISSMKQV 150 >gi|322376137|ref|ZP_08050646.1| SP14.3 protein [Streptococcus sp. C300] gi|321278905|gb|EFX55949.1| SP14.3 protein [Streptococcus sp. C300] Length = 159 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 72/157 (45%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + VI+PVI+ F V I + +++L IFV++ + +TL D +L++ ISP Sbjct: 7 IVELVREVIEPVIQA-PFELVDIEYGKIGSDMILSIFVDKPE-GITLNDTADLTEIISPA 64 Query: 80 LD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LE++SPG++RP+ K G + + + ++ G ++ Sbjct: 65 LDTIKPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLVS 124 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + K + I + + ARL V Sbjct: 125 FEGDELTMEYMDKTRKK----TVQIPYSLVSKARLAV 157 >gi|312898334|ref|ZP_07757724.1| conserved hypothetical protein [Megasphaera micronuciformis F0359] gi|310620253|gb|EFQ03823.1| conserved hypothetical protein [Megasphaera micronuciformis F0359] Length = 153 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 75/157 (47%), Gaps = 8/157 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 + +S ++ +I V + + E++ L++F+++ +G + L DC+ +S+ Sbjct: 1 MKRSDIEQLVSQEVETIIAGTDLELVDVEYVRERDWYLRVFIDK-EGGVGLEDCQAVSEK 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LDV++ I Y LEVSSPG+DR + + +DF+R+ V + L ++ Sbjct: 60 LSEFLDVKDPITDKYLLEVSSPGLDRILKKDTDFVRYKDRHVDVHFFTPYKGVKSLTARL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +G ++G ++E AI + RL Sbjct: 120 VGKDKSGVV-------HLLIDEEDAAIDSKDISQIRL 149 >gi|254468932|ref|ZP_05082338.1| hypothetical protein KB13_1157 [beta proteobacterium KB13] gi|207087742|gb|EDZ65025.1| hypothetical protein KB13_1157 [beta proteobacterium KB13] Length = 158 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 78/149 (52%), Gaps = 10/149 (6%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 D+ +I I+ + + V+ + L++IF++ + +++ DC ++S ++ +L VE Sbjct: 16 DLEKIISESIQNIGYELVECE-HNHNSGLIRIFIDNGN-LISVDDCVKVSNHLNRVLSVE 73 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + RLEVSSPG+DR +++ +D+ R+ G + ++ +++K GK++ + E Sbjct: 74 -LDYDFSRLEVSSPGVDRKLIKLADYKRFEGEKIKIKLYSPINNQKKFDGKLIASDEKKI 132 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + +E + + FD + ARL Sbjct: 133 KILL-------SDEKILEVPFDEIQMARL 154 >gi|296877070|ref|ZP_06901111.1| protein of hypothetical function DUF150 [Streptococcus parasanguinis ATCC 15912] gi|312867870|ref|ZP_07728075.1| conserved hypothetical protein [Streptococcus parasanguinis F0405] gi|296431931|gb|EFH17737.1| protein of hypothetical function DUF150 [Streptococcus parasanguinis ATCC 15912] gi|311096625|gb|EFQ54864.1| conserved hypothetical protein [Streptococcus parasanguinis F0405] Length = 159 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + ++ VIQP I+E F V + + + +L IFV++ + +TL D +L++ ISP+ Sbjct: 7 IVDLVTEVIQPAIKE-PFELVDVEYGKMGGDYVLSIFVDKPE-GITLNDTADLTEIISPL 64 Query: 80 LDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LEV+SPG++RP+ K G V + + ++ G ++G Sbjct: 65 LDQIKPDPFPEQYFLEVTSPGLERPLKTKEALEGAVGKYVNISLYKAVEKQKVFEGNLVG 124 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + K + I ++ + ARL V Sbjct: 125 FEEDVLTIEYMDKTRKK----TVDIPYNLVSKARLAV 157 >gi|207723238|ref|YP_002253637.1| hypothetical protein RSMK00472 [Ralstonia solanacearum MolK2] gi|206588434|emb|CAQ35397.1| conserved hypothetical protein [Ralstonia solanacearum MolK2] Length = 144 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 63/132 (47%), Gaps = 2/132 (1%) Query: 43 ISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRP 102 + + LL++++++ + + + DCE++S ++ + +VEN+ + RLEVSSPG+DRP Sbjct: 1 MEVERAPAGLLRVYIDQAETGIVIEDCEKVSHQLTRVFEVENV--HYERLEVSSPGLDRP 58 Query: 103 MVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAI 162 + +DF R+ G V + L ++ G + + E + Sbjct: 59 LRTLTDFTRFAGQEVKVTLRLPVEGQKNFTGIVQAPTGEPGQERIGLEFEGKDGPALLEF 118 Query: 163 SFDSLLSARLIV 174 + L ARL+ Sbjct: 119 TLSELDRARLVP 130 >gi|304439998|ref|ZP_07399891.1| protein of hypothetical function DUF150 [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371490|gb|EFM25103.1| protein of hypothetical function DUF150 [Peptoniphilus duerdenii ATCC BAA-1640] Length = 154 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 74/152 (48%), Gaps = 10/152 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQ-IFVERDDGNMTLRDCEELSQAIS 77 G+ ++ + V EE + V+++ + L +F+ ++D ++L DC+ +S+AI Sbjct: 5 KGILSKLNEISTKVAEERGYEIVEVAYKKATPHSLVSVFIYKED-GISLDDCDTMSRAIE 63 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD E+IIE Y LEVSSPG+DRP+ + D R G +V ++ + G + Sbjct: 64 EELDKEDIIEESYYLEVSSPGLDRPIKTQDDLRRNKGKLVEAKLFAPLDGNKLYEGVLAS 123 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLS 169 ++ L+ E + ++ + S+ Sbjct: 124 YTKDTVILDNEGK--------EVELPLKSISK 147 >gi|302380608|ref|ZP_07269073.1| conserved hypothetical protein [Finegoldia magna ACS-171-V-Col3] gi|302311551|gb|EFK93567.1| conserved hypothetical protein [Finegoldia magna ACS-171-V-Col3] Length = 154 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 73/162 (45%), Gaps = 9/162 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQ 74 L +++ + P+I++ + +L ++E+DDG +++ DCE ++ Sbjct: 1 MNKKYLRDLMNNDLSPLIKDTGIEFYDVEYSNNNGKNILTFYIEKDDGLISIDDCELINN 60 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 IS LD + I Y LE++S I P R DF + G+VV + +++ G Sbjct: 61 KISDKLDEIDPISDPYYLEIASVDITTPFTRDKDFKKNLGNVVIVNLYQKLDSQKEFKGI 120 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 + ++ LE EK+ +I I ++ S +L + D Sbjct: 121 LKDFNDKEISLELEKK--------EIKIERSNISSIKLSLFD 154 >gi|306830061|ref|ZP_07463247.1| hypothetical protein HMPREF8571_1603 [Streptococcus mitis ATCC 6249] gi|304427774|gb|EFM30868.1| hypothetical protein HMPREF8571_1603 [Streptococcus mitis ATCC 6249] Length = 175 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + V++PVI+ F V I + +++L IFV++ + +TL D +L++ ISP+ Sbjct: 23 IVELVREVVEPVIQA-PFELVDIEYGKIGSDMILSIFVDKPE-GITLNDTADLTEIISPV 80 Query: 80 LD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LE++SPG++RP+ K G + + + ++ G ++ Sbjct: 81 LDTIKPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLS 140 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + K + I + + ARL V Sbjct: 141 FEEEELTVEYMDKTRKK----TVQIPYSLVSKARLAV 173 >gi|270292190|ref|ZP_06198405.1| conserved hypothetical protein [Streptococcus sp. M143] gi|293364177|ref|ZP_06610904.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037] gi|270279718|gb|EFA25560.1| conserved hypothetical protein [Streptococcus sp. M143] gi|291317355|gb|EFE57781.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037] Length = 175 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + V++PVI+ F V I + +++L IFV++ + +TL D +L++ ISP+ Sbjct: 23 IVELVREVVEPVIQA-PFELVDIEYGKIGSDMILSIFVDKPE-GITLNDTADLTEIISPV 80 Query: 80 LD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LE++SPG++RP+ K G + + + ++ G ++ Sbjct: 81 LDTIKPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLVS 140 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + K + I + + ARL V Sbjct: 141 FEEDELTMEYMDKTRKK----TVQIPYSLVSKARLAV 173 >gi|15644523|ref|NP_229575.1| hypothetical protein TM1778 [Thermotoga maritima MSB8] gi|34223165|sp|Q9X299|RIMP_THEMA RecName: Full=Ribosome maturation factor rimP gi|4982356|gb|AAD36841.1|AE001815_15 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 150 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 13/160 (8%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQ 74 + + + + + EE + E + +L+I ++ G +++RDCE S+ Sbjct: 1 MFEEMILEKVRKEAERIAEEQGLEIFDVQYRRESRGWVLRIIIDNPVGYVSVRDCELFSR 60 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 + LD E+ IE Y LEVSSPG+DRP+ D++R+ G + + IG+ Sbjct: 61 EMERFLDREDFIEHSYTLEVSSPGLDRPLRGPRDYVRFTGKLAKIVTKDG----KTFIGR 116 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 I + + EKR I+ D + A L V Sbjct: 117 IESFVDGTITISDEKRK--------YEINIDDVKRANLEV 148 >gi|256851260|ref|ZP_05556649.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN] gi|260660684|ref|ZP_05861599.1| UPF0090 protein [Lactobacillus jensenii 115-3-CHN] gi|282934728|ref|ZP_06339971.1| conserved hypothetical protein [Lactobacillus jensenii 208-1] gi|256616322|gb|EEU21510.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN] gi|260548406|gb|EEX24381.1| UPF0090 protein [Lactobacillus jensenii 115-3-CHN] gi|281301303|gb|EFA93604.1| conserved hypothetical protein [Lactobacillus jensenii 208-1] Length = 158 Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 69/156 (44%), Gaps = 7/156 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQAIS 77 + ++ ++ P+ E+ V + ++EKN L+I+V+R + + + + LS+ +S Sbjct: 2 TKIIDLVTDLVTPLAEKRGDELVDVEYVKEKNQYYLRIYVDRGESGIDIEEIAALSEIVS 61 Query: 78 PILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + Y LE+SSPG++RP+ + D+ + + ++ G + Sbjct: 62 EELDKLNPDPFTEPYMLELSSPGLERPIKNERDWNKALNKYIHVACYQKIDGQKSFDGTL 121 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 + + + + ++ I ++ +AR Sbjct: 122 LSRDNK----KITLKIKIKTRTKELEIPIGAIANAR 153 >gi|297206127|ref|ZP_06923522.1| protein of hypothetical function DUF150 [Lactobacillus jensenii JV-V16] gi|297149253|gb|EFH29551.1| protein of hypothetical function DUF150 [Lactobacillus jensenii JV-V16] Length = 169 Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 73/168 (43%), Gaps = 10/168 (5%) Query: 7 LHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMT 65 L S E + + ++ ++ P+ E+ V + ++EKN L+I+V+R + + Sbjct: 4 LFSTEEDFL---TKIIDLVTDLVTPLAEKRGDELVDVEYVKEKNQYYLRIYVDRGESGID 60 Query: 66 LRDCEELSQAISPILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVL 123 + + LS+ +S LD + Y LE+SSPG++RP+ + D+ + + Sbjct: 61 IEEIAALSEIVSEELDKLNPDPFTEPYMLELSSPGLERPIKNERDWNKALNKYIHVACYQ 120 Query: 124 SSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 ++ G ++ + + + ++ I ++ +AR Sbjct: 121 KIDGQKSFDGTLLSRDNK----KITLKIKIKTRTKELEIPIGAIANAR 164 >gi|224543311|ref|ZP_03683850.1| hypothetical protein CATMIT_02511 [Catenibacterium mitsuokai DSM 15897] gi|224523844|gb|EEF92949.1| hypothetical protein CATMIT_02511 [Catenibacterium mitsuokai DSM 15897] Length = 153 Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 5/153 (3%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILD 81 I + P+I + ++EK L++F+E++DGN+ + C +S+A+S LD Sbjct: 3 EKIKEGLLPIIASFECHLDSMEYVKEKGEWYLRVFIEKNDGNLDMDTCVAVSEAVSEKLD 62 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 ++I+ Y LEVSSPGI++P+ G V ++ L G + Sbjct: 63 ELDLIKDEYYLEVSSPGIEKPLKTFEQVEAHVGSYVHIDLKNPQNGIDSLEGTLASIDGK 122 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ + + ++ I++D + RL V Sbjct: 123 ELLIQYMVKAVRK----KMTINYDDIKFIRLAV 151 >gi|148983930|ref|ZP_01817249.1| hypothetical protein CGSSp3BS71_07349 [Streptococcus pneumoniae SP3-BS71] gi|148990070|ref|ZP_01821324.1| hypothetical protein CGSSp6BS73_05420 [Streptococcus pneumoniae SP6-BS73] gi|148992338|ref|ZP_01822061.1| hypothetical protein CGSSp9BS68_06575 [Streptococcus pneumoniae SP9-BS68] gi|148998225|ref|ZP_01825694.1| hypothetical protein CGSSp11BS70_03456 [Streptococcus pneumoniae SP11-BS70] gi|168485663|ref|ZP_02710171.1| conserved hypothetical protein [Streptococcus pneumoniae CDC1087-00] gi|168490558|ref|ZP_02714701.1| conserved hypothetical protein [Streptococcus pneumoniae CDC0288-04] gi|168576546|ref|ZP_02722420.1| conserved hypothetical protein [Streptococcus pneumoniae MLV-016] gi|225854093|ref|YP_002735605.1| hypothetical protein SPJ_0512 [Streptococcus pneumoniae JJA] gi|225856262|ref|YP_002737773.1| hypothetical protein SPP_0569 [Streptococcus pneumoniae P1031] gi|225860557|ref|YP_002742066.1| hypothetical protein SPT_0582 [Streptococcus pneumoniae Taiwan19F-14] gi|237650176|ref|ZP_04524428.1| hypothetical protein SpneC1_05532 [Streptococcus pneumoniae CCRI 1974] gi|237821776|ref|ZP_04597621.1| hypothetical protein SpneC19_05602 [Streptococcus pneumoniae CCRI 1974M2] gi|298230908|ref|ZP_06964589.1| hypothetical protein SpneCMD_09588 [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255626|ref|ZP_06979212.1| hypothetical protein SpneCM_08527 [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502346|ref|YP_003724286.1| hypothetical protein HMPREF0837_10844 [Streptococcus pneumoniae TCH8431/19A] gi|303255253|ref|ZP_07341326.1| hypothetical protein CGSSpBS455_07226 [Streptococcus pneumoniae BS455] gi|307709806|ref|ZP_07646257.1| conserved hypothetical protein [Streptococcus mitis SK564] gi|254806452|sp|C1CCT4|RIMP_STRZJ RecName: Full=Ribosome maturation factor rimP gi|254806512|sp|C1CJ35|RIMP_STRZP RecName: Full=Ribosome maturation factor rimP gi|254806519|sp|C1CQ44|RIMP_STRZT RecName: Full=Ribosome maturation factor rimP gi|259586203|sp|C1C5S4|RIMP_STRP7 RecName: Full=Ribosome maturation factor rimP gi|259586204|sp|B2IME0|RIMP_STRPS RecName: Full=Ribosome maturation factor rimP gi|147755868|gb|EDK62912.1| hypothetical protein CGSSp11BS70_03456 [Streptococcus pneumoniae SP11-BS70] gi|147924077|gb|EDK75189.1| hypothetical protein CGSSp3BS71_07349 [Streptococcus pneumoniae SP3-BS71] gi|147924596|gb|EDK75683.1| hypothetical protein CGSSp6BS73_05420 [Streptococcus pneumoniae SP6-BS73] gi|147928964|gb|EDK79976.1| hypothetical protein CGSSp9BS68_06575 [Streptococcus pneumoniae SP9-BS68] gi|183571099|gb|EDT91627.1| conserved hypothetical protein [Streptococcus pneumoniae CDC1087-00] gi|183574915|gb|EDT95443.1| conserved hypothetical protein [Streptococcus pneumoniae CDC0288-04] gi|183577690|gb|EDT98218.1| conserved hypothetical protein [Streptococcus pneumoniae MLV-016] gi|225722728|gb|ACO18581.1| conserved hypothetical protein [Streptococcus pneumoniae JJA] gi|225725938|gb|ACO21790.1| conserved hypothetical protein [Streptococcus pneumoniae P1031] gi|225727228|gb|ACO23079.1| conserved hypothetical protein [Streptococcus pneumoniae Taiwan19F-14] gi|298237941|gb|ADI69072.1| protein of hypothetical function DUF150 [Streptococcus pneumoniae TCH8431/19A] gi|301799609|emb|CBW32164.1| conserved hypothetical protein [Streptococcus pneumoniae OXC141] gi|301801433|emb|CBW34120.1| conserved hypothetical protein [Streptococcus pneumoniae INV200] gi|302597794|gb|EFL64867.1| hypothetical protein CGSSpBS455_07226 [Streptococcus pneumoniae BS455] gi|307619508|gb|EFN98633.1| conserved hypothetical protein [Streptococcus mitis SK564] gi|327390292|gb|EGE88633.1| hypothetical protein SPAR5_0534 [Streptococcus pneumoniae GA04375] gi|332076388|gb|EGI86851.1| hypothetical protein SPAR68_0575 [Streptococcus pneumoniae GA41301] gi|332202436|gb|EGJ16505.1| hypothetical protein SPAR69_0547 [Streptococcus pneumoniae GA41317] gi|332203717|gb|EGJ17784.1| hypothetical protein SPAR93_0588 [Streptococcus pneumoniae GA47368] Length = 159 Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + V++PVIE F V I + +++L IFV++ + +TL D +L++ ISP+ Sbjct: 7 IVELVREVVEPVIEA-PFELVDIEYGKIGSDMILSIFVDKPE-GITLNDTADLTEMISPV 64 Query: 80 LD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LE++SPG++RP+ K G + + + ++ G ++ Sbjct: 65 LDTIKPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLA 124 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + K + I + + ARL V Sbjct: 125 FEEDELTMEYMDKTRKK----TVQIPYSLVSKARLAV 157 >gi|15900464|ref|NP_345068.1| hypothetical protein SP_0552 [Streptococcus pneumoniae TIGR4] gi|111657274|ref|ZP_01408040.1| hypothetical protein SpneT_02001512 [Streptococcus pneumoniae TIGR4] gi|149012574|ref|ZP_01833571.1| hypothetical protein CGSSp19BS75_10108 [Streptococcus pneumoniae SP19-BS75] gi|168488243|ref|ZP_02712442.1| conserved hypothetical protein [Streptococcus pneumoniae SP195] gi|194396782|ref|YP_002037213.1| hypothetical protein SPG_0498 [Streptococcus pneumoniae G54] gi|221231385|ref|YP_002510537.1| hypothetical protein SPN23F_04980 [Streptococcus pneumoniae ATCC 700669] gi|307710805|ref|ZP_07647233.1| conserved hypothetical protein [Streptococcus mitis SK321] gi|34222993|sp|Q97S61|RIMP_STRPN RecName: Full=Ribosome maturation factor rimP; AltName: Full=SP14.3 gi|226707643|sp|B5E262|RIMP_STRP4 RecName: Full=Ribosome maturation factor rimP gi|254806440|sp|B8ZM89|RIMP_STRPJ RecName: Full=Ribosome maturation factor rimP gi|14972026|gb|AAK74708.1| SP14.3 protein [Streptococcus pneumoniae TIGR4] gi|147763379|gb|EDK70316.1| hypothetical protein CGSSp19BS75_10108 [Streptococcus pneumoniae SP19-BS75] gi|183572963|gb|EDT93491.1| conserved hypothetical protein [Streptococcus pneumoniae SP195] gi|194356449|gb|ACF54897.1| hypothetical protein SPG_0498 [Streptococcus pneumoniae G54] gi|220673845|emb|CAR68348.1| conserved hypothetical protein [Streptococcus pneumoniae ATCC 700669] gi|301793756|emb|CBW36143.1| conserved hypothetical protein [Streptococcus pneumoniae INV104] gi|307617411|gb|EFN96583.1| conserved hypothetical protein [Streptococcus mitis SK321] gi|332074366|gb|EGI84842.1| hypothetical protein SPAR50_0547 [Streptococcus pneumoniae GA17570] gi|332204572|gb|EGJ18637.1| hypothetical protein SPAR120_0537 [Streptococcus pneumoniae GA47901] Length = 159 Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + V++PVIE F V I + +++L IFV++ + +TL D +L++ ISP+ Sbjct: 7 IVELVREVVEPVIEA-PFELVDIEYGKIGSDMILSIFVDKPE-GITLNDTADLTEIISPV 64 Query: 80 LD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LE++SPG++RP+ K G + + + ++ G ++ Sbjct: 65 LDTIKPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLA 124 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + K + I + + ARL V Sbjct: 125 FEEDELTMEYMDKTRKK----TVQIPYSLVSKARLAV 157 >gi|322391043|ref|ZP_08064547.1| protein of hypothetical function DUF150 [Streptococcus parasanguinis ATCC 903] gi|321142273|gb|EFX37747.1| protein of hypothetical function DUF150 [Streptococcus parasanguinis ATCC 903] Length = 159 Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + ++ VIQP I+E F V + + + +L IFV++ + +TL D +L++ ISP+ Sbjct: 7 IVDLVTEVIQPAIQE-PFELVDVEYGKMGGDYVLSIFVDKPE-GITLNDTADLTEIISPL 64 Query: 80 LDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LEV+SPG++RP+ K G V + + ++ G ++ Sbjct: 65 LDQIKPDPFPEQYFLEVTSPGLERPLKTKQALEGALGKYVNISLYKAVEKQKVFEGTLVR 124 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + K + I ++ + ARL V Sbjct: 125 FEEDVLTIEYMDKTRKK----TVEIPYNLVSKARLAV 157 >gi|157151233|ref|YP_001449858.1| hypothetical protein SGO_0542 [Streptococcus gordonii str. Challis substr. CH1] gi|259586201|sp|A8AVP8|RIMP_STRGC RecName: Full=Ribosome maturation factor rimP gi|157076027|gb|ABV10710.1| conserved hypothetical protein [Streptococcus gordonii str. Challis substr. CH1] Length = 162 Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 73/157 (46%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + +++VI+P I F V + + + +L +FV++ + +T+ D +L+ ISP+ Sbjct: 10 IVELVTAVIEPAITA-PFELVDVEYGKIGSDYVLSVFVDKPE-GITVNDTADLTDIISPL 67 Query: 80 LD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LEV+SPG++RP+ K G + + S ++ G ++ Sbjct: 68 LDTIKPDPFPEQYFLEVTSPGLERPLKTKEQVEAAVGQYIHVGLYKSLDKQKVFEGTLLQ 127 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E LE + K +I I + + ARL V Sbjct: 128 FKEDVLTLEYMDKTRKK----EIDIPYSLVSKARLAV 160 >gi|307702468|ref|ZP_07639423.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037] gi|307623962|gb|EFO02944.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037] Length = 159 Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + V++PVI+ F V I + +++L IFV++ + +TL D +L++ ISP+ Sbjct: 7 IVELVREVVEPVIQA-PFELVDIEYGKIGSDMILSIFVDKPE-GITLNDTADLTEIISPV 64 Query: 80 LD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LE++SPG++RP+ K G + + + ++ G ++ Sbjct: 65 LDTIKPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLVS 124 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + K + I + + ARL V Sbjct: 125 FEEDELTMEYMDKTRKK----TVQIPYSLVSKARLAV 157 >gi|327398876|ref|YP_004339745.1| Ribosome maturation factor rimP [Hippea maritima DSM 10411] gi|327181505|gb|AEA33686.1| Ribosome maturation factor rimP [Hippea maritima DSM 10411] Length = 140 Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 16/152 (10%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L+ ++ I V+E + + I L ++K + I++++ G +++ DCE S+ IS +L Sbjct: 2 LSEELKEDIFVVVESLGYSVYDIELTQKK---ITIYIDKP-GGVSIDDCELASRNISALL 57 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DV++ G Y LEVSSPGI+R + K F+ G + + G + ++ Sbjct: 58 DVKDPFSGSYTLEVSSPGINRKLKTKEHFMAAIGKKCVVHTHFPVDNSKVFKGILTECND 117 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +E + I FD++ AR+ Sbjct: 118 NEIVIE------------GVRIEFDNIKKARI 137 >gi|262282170|ref|ZP_06059939.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] gi|262262624|gb|EEY81321.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] Length = 162 Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + +++VI+P I F V + + + +L +FV++ + +T+ D +L+ ISP+ Sbjct: 10 IVELVTAVIEPAITA-PFELVDVEYGKIGSDYVLSVFVDKPE-GITVNDTADLTDIISPL 67 Query: 80 LD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LEV+SPG++RP+ K G + + S ++ G ++ Sbjct: 68 LDTIKPDPFPEQYFLEVTSPGLERPLKTKEQVEAAVGQYIHVGLYKSLDKQKVFEGTLLQ 127 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + K +I I + + ARL V Sbjct: 128 FKEDVLTIEYMDKTRKK----EIDIPYSLVSKARLAV 160 >gi|315222141|ref|ZP_07864050.1| UPF0090 protein [Streptococcus anginosus F0211] gi|315188767|gb|EFU22473.1| UPF0090 protein [Streptococcus anginosus F0211] Length = 162 Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 73/157 (46%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + V++PVI+E + V I + + +L IFV++ G +T+ D +L+ ISP+ Sbjct: 10 IVELVKEVVEPVIQE-PYELVNIEYGKMGSDHVLSIFVDKP-GGITVNDTADLTDIISPL 67 Query: 80 LD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LEV+SPG++RP+ K G + + + + G ++ Sbjct: 68 LDTIKPDPFPEQYFLEVTSPGLERPLKTKEQLAAAVGEYIHVSLYQALDKSKVFEGTLLS 127 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + K + + I + + ARL V Sbjct: 128 FEEDHLTMEYMDKTRKKV----VQIPYQLVSKARLAV 160 >gi|309799812|ref|ZP_07694019.1| conserved hypothetical protein [Streptococcus infantis SK1302] gi|308116528|gb|EFO53997.1| conserved hypothetical protein [Streptococcus infantis SK1302] Length = 159 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + V++PVIE F V I + +++L IFV++ + +TL D +L++ ISP+ Sbjct: 7 IVELVREVVEPVIEA-PFELVDIEYGKIGSDMILSIFVDKPE-GITLNDTADLTEIISPV 64 Query: 80 LD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LE++SPG++RP+ K G + + + ++ G ++ Sbjct: 65 LDTIKPDPFPEQYFLEITSPGLERPLKTKEAVAGAVGKYIHVGLYQAIDKQKVFEGTLLA 124 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + K + I + + ARL V Sbjct: 125 FEEDELTMEYMDKTRKK----TVQIPYSLVSKARLAV 157 >gi|167756907|ref|ZP_02429034.1| hypothetical protein CLORAM_02456 [Clostridium ramosum DSM 1402] gi|167703082|gb|EDS17661.1| hypothetical protein CLORAM_02456 [Clostridium ramosum DSM 1402] Length = 155 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 77/157 (49%), Gaps = 5/157 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 M L I ++I+P++E I L+E L+IFVE+++G++ + C +S+AIS Sbjct: 1 MELLDTIKTLIKPILENNDVYLDDIEYLQENGEWYLRIFVEKNEGSLDMDTCVAVSEAIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +D E+ I+G Y LEVSSPG+++P+ G V + + + ++ G I Sbjct: 61 LKMDEEDPIKGEYYLEVSSPGVEKPLKTFEQVKASVGKYVYAKFINPTAGMDEVEGFIKT 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + E + K +I I + ++ RL V Sbjct: 121 IEDETIEFEYLVKNIKK----RIKIDYSNIKFIRLAV 153 >gi|289423156|ref|ZP_06424971.1| conserved hypothetical protein [Peptostreptococcus anaerobius 653-L] gi|289156487|gb|EFD05137.1| conserved hypothetical protein [Peptostreptococcus anaerobius 653-L] Length = 154 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 83/161 (51%), Gaps = 12/161 (7%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQA 75 +A + ++QP+ + F V + ++E + L++ ++ +D + L +CE++S+ Sbjct: 1 MKKNIAQQVEKLVQPIADLYGFELVDVEYVKEAGIYYLRVIIDSED-GIGLDECEKVSRD 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG--DKQKLIG 133 ++PILD +++IE +Y LEV SPGIDR + R ++ +++G +V ++ ++ + Sbjct: 60 LNPILDEKDMIEENYLLEVCSPGIDRILKRDHEYEKYSGKLVEVKLYANNDIVKGKHFEA 119 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + G + L + + ++ ++ + RL V Sbjct: 120 DLCGLEDDNIVLLYKGK--------ELKLNRKEVAQVRLAV 152 >gi|152981795|ref|YP_001354187.1| hypothetical protein mma_2497 [Janthinobacterium sp. Marseille] gi|151281872|gb|ABR90282.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 170 Score = 99.7 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 37/159 (23%), Positives = 75/159 (47%), Gaps = 16/159 (10%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVE-----RDDGNMTLRDCEELSQAISP 78 +S++I+ + M + V + L+++F++ D G +T+ DCE+++ + Sbjct: 11 QLSALIEKTVVGMGYELVNFE--QAARGLVRVFIDFTPEDADKGAITVEDCEKVTHQLLH 68 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG---DKQKLIGKI 135 +L VEN + RLEVSSPG+DRP+ + SD++R+ G ++ + +++ G + Sbjct: 69 VLTVENA--NYERLEVSSPGLDRPLKKLSDYVRFAGAEALVKLRMPMPNAANRKSFQGIL 126 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 LE E ++ + + A L+ Sbjct: 127 QEPVGETLALEFEGND----GPAKLEFTLADVDKAHLVP 161 >gi|15902521|ref|NP_358071.1| hypothetical protein spr0477 [Streptococcus pneumoniae R6] gi|116516675|ref|YP_815984.1| hypothetical protein SPD_0478 [Streptococcus pneumoniae D39] gi|149002223|ref|ZP_01827165.1| hypothetical protein CGSSp14BS69_01239 [Streptococcus pneumoniae SP14-BS69] gi|149005662|ref|ZP_01829401.1| hypothetical protein CGSSp18BS74_08855 [Streptococcus pneumoniae SP18-BS74] gi|149021507|ref|ZP_01835562.1| hypothetical protein CGSSp23BS72_06564 [Streptococcus pneumoniae SP23-BS72] gi|169833553|ref|YP_001694039.1| hypothetical protein SPH_0649 [Streptococcus pneumoniae Hungary19A-6] gi|307126755|ref|YP_003878786.1| hypothetical protein SP670_0615 [Streptococcus pneumoniae 670-6B] gi|34222871|sp|Q8DQV6|RIMP_STRR6 RecName: Full=Ribosome maturation factor rimP gi|122279130|sp|Q04LW4|RIMP_STRP2 RecName: Full=Ribosome maturation factor rimP gi|226707991|sp|B1IA76|RIMP_STRPI RecName: Full=Ribosome maturation factor rimP gi|15458047|gb|AAK99281.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] gi|116077251|gb|ABJ54971.1| conserved hypothetical protein [Streptococcus pneumoniae D39] gi|147759538|gb|EDK66529.1| hypothetical protein CGSSp14BS69_01239 [Streptococcus pneumoniae SP14-BS69] gi|147762602|gb|EDK69562.1| hypothetical protein CGSSp18BS74_08855 [Streptococcus pneumoniae SP18-BS74] gi|147930203|gb|EDK81188.1| hypothetical protein CGSSp23BS72_06564 [Streptococcus pneumoniae SP23-BS72] gi|168996055|gb|ACA36667.1| conserved hypothetical protein [Streptococcus pneumoniae Hungary19A-6] gi|306483817|gb|ADM90686.1| conserved hypothetical protein [Streptococcus pneumoniae 670-6B] gi|332076984|gb|EGI87446.1| hypothetical protein SPAR148_0517 [Streptococcus pneumoniae GA17545] Length = 159 Score = 99.7 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + V++PVIE F V I + +++L IFV++ + +TL D +L++ ISP+ Sbjct: 7 IVELVREVVEPVIEA-PFELVDIEYGKIGSDMILSIFVDKPE-GITLNDTADLTEIISPV 64 Query: 80 LD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LE++SPG++RP+ K G + + + ++ G ++ Sbjct: 65 LDTIKPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLA 124 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + K + I + + ARL V Sbjct: 125 FEEDELTMEYMDKTRKK----TVRIPYSLVSKARLAV 157 >gi|312872031|ref|ZP_07732109.1| conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] gi|311092444|gb|EFQ50810.1| conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1] Length = 148 Score = 99.7 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 67/144 (46%), Gaps = 7/144 (4%) Query: 31 PVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILD--VENIIE 87 P++ V I ++E N L+I+V+R+ + + + LS+++S LD + + Sbjct: 4 PLVHARGDELVDIEYVKENNQNYLRIYVDREPNGIDIDEIATLSESVSEQLDLINPDPLP 63 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LE+SSPG++RP+ ++D+ + V + ++ G ++ LE Sbjct: 64 DPYILELSSPGVERPIKTEADWCKAKNDYVHVGLYKKINGQKSYEGTLLDYDMDKIILEI 123 Query: 148 EKRGEKDMNELQIAISFDSLLSAR 171 + + +IAI + + + R Sbjct: 124 ----KIKTQQKKIAIPRNMIANIR 143 >gi|307705616|ref|ZP_07642468.1| conserved hypothetical protein [Streptococcus mitis SK597] gi|307620893|gb|EFN99977.1| conserved hypothetical protein [Streptococcus mitis SK597] Length = 159 Score = 99.7 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + V++PVIE F V I + +++L IFV++ + +TL D +L++ ISP+ Sbjct: 7 IVELVREVVEPVIEA-PFELVDIEYGKIGSDMILSIFVDKPE-GITLNDTADLTEMISPV 64 Query: 80 LD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LE++SPG++RP+ K G + + + ++ G ++ Sbjct: 65 LDTIKPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLA 124 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + K + I + + ARL V Sbjct: 125 FEEEELTMEYMDKTRKK----TVQIPYSLVSKARLAV 157 >gi|307707651|ref|ZP_07644132.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261] gi|322377699|ref|ZP_08052189.1| SP14.3 protein [Streptococcus sp. M334] gi|307616364|gb|EFN95556.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261] gi|321281464|gb|EFX58474.1| SP14.3 protein [Streptococcus sp. M334] Length = 159 Score = 99.7 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + V++PVI+ F V I + +++L IFV++ + +TL D +L++ ISP+ Sbjct: 7 IVELVREVVEPVIQA-PFELVDIEYGKIGSDMILSIFVDKPE-GITLNDTADLTEIISPV 64 Query: 80 LD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LE++SPG++RP+ K G + + + ++ G ++ Sbjct: 65 LDTIKPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLA 124 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + K + I + + ARL V Sbjct: 125 FEEDELTMEYMDKTRKK----TVQIPYSLVSKARLAV 157 >gi|313896717|ref|ZP_07830265.1| conserved hypothetical protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312974634|gb|EFR40101.1| conserved hypothetical protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 149 Score = 99.7 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 13/157 (8%) Query: 17 GDMGLAGDISSVIQPVI-EEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 + + ++Q ++ + V + + E++ L++++++ +G + + DC LS+ Sbjct: 1 MSAKIEERVEEIVQDLLPVQPELELVDVEYVRERDWYLRVYIDK-EGGIDIEDCRTLSER 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 + ILD E+ I Y LEVSSPG+DR + + DF R +G V + K+ L G++ Sbjct: 60 LEEILDREDFIADAYILEVSSPGLDRVLRKARDFEREHGKRVDVALYAPLDGKKNLTGEL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G L+ + + I + + RL Sbjct: 120 TGYDGNVLILDDD-----------VRIPMEQVSQVRL 145 >gi|319937396|ref|ZP_08011803.1| hypothetical protein HMPREF9488_02638 [Coprobacillus sp. 29_1] gi|319807762|gb|EFW04355.1| hypothetical protein HMPREF9488_02638 [Coprobacillus sp. 29_1] Length = 153 Score = 99.3 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 5/153 (3%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILD 81 I+S+IQP+++ I + EKN L+IF+E++DG++ + C +S+ IS LD Sbjct: 3 EKITSLIQPILDNHDVYLDDIEYVSEKNEWYLRIFIEKNDGHLDMDTCVAVSEDISLKLD 62 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 E+II Y LEVSSPG ++P+ + G V + + ++ G + Sbjct: 63 EEDIITNEYYLEVSSPGAEKPLKTLEKVQQSIGEYVYIQFKKPTLGMDEVYGTLFNVDGE 122 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L+ + K + I +D + RL V Sbjct: 123 MIELQYMVKNIKKKCD----IKYDDIAFIRLAV 151 >gi|259585828|sp|B8FCY3|RIMP_DESAA RecName: Full=Ribosome maturation factor rimP Length = 152 Score = 99.3 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 10/151 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + + +E V +L+++V++ +G +TL DC +S+ + +LD Sbjct: 2 EQVRKLTGAALEAEGMDLVLAEFKREGGGYILRLYVDK-EGGITLGDCTMVSRYVGDLLD 60 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 YRLEVSSPG+DRP+ R+ F R+ G ++K G + G Sbjct: 61 AYADEMPRYRLEVSSPGLDRPLTREDHFRRFEGRTALIVTKEPREGRKKFRGVLSGALNG 120 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 L + E+ + + + SARL Sbjct: 121 VITLVAD--------EVPMEFALHEIESARL 143 >gi|289167248|ref|YP_003445515.1| hypothetical protein smi_0375 [Streptococcus mitis B6] gi|288906813|emb|CBJ21647.1| conserved hypothetical protein [Streptococcus mitis B6] Length = 159 Score = 99.3 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + V++PVI+ F V I + +++L IFV++ + +TL D +L++ ISP+ Sbjct: 7 IVELVREVVEPVIQS-PFELVDIEYGKIGSDMILSIFVDKPE-GITLNDTADLTEVISPV 64 Query: 80 LD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LE++SPG++RP+ K G + + + ++ G ++ Sbjct: 65 LDTIKPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLA 124 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + K + I + + ARL V Sbjct: 125 FEEDELTMEYMDKTRKK----TVQIPYSLVSKARLAV 157 >gi|146319504|ref|YP_001199216.1| hypothetical protein SSU05_1850 [Streptococcus suis 05ZYH33] gi|259645119|sp|A4VXH7|RIMP_STRSY RecName: Full=Ribosome maturation factor rimP gi|145690310|gb|ABP90816.1| unknown protein [Streptococcus suis 05ZYH33] Length = 158 Score = 99.3 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 76/159 (47%), Gaps = 9/159 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + +++ I P I+ + V + + + +L IFV++ +G ++L+D +LS+ IS Sbjct: 4 SSIIELVTAAITPAIQT-PYELVDVEYGKMGGDYVLSIFVDK-EGGISLQDTADLSEKIS 61 Query: 78 PILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 PILD + Y LEV+SPG++RP+ + G + ++ + + G + Sbjct: 62 PILDTIKPDPFPDQYMLEVTSPGLERPLKTADAVEKAVGKYIHVKLYQAIDKLKVFEGTL 121 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + T +E + K ++ I + ++ ARL V Sbjct: 122 LSFDGTDLIMEYMDKTRKK----EVTIPYQTVAKARLAV 156 >gi|227878820|ref|ZP_03996727.1| protein of hypothetical function DUF150 [Lactobacillus crispatus JV-V01] gi|227861568|gb|EEJ69180.1| protein of hypothetical function DUF150 [Lactobacillus crispatus JV-V01] Length = 172 Score = 99.3 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 69/156 (44%), Gaps = 7/156 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAIS 77 + + V++ +I+E V + ++EK L+I+V+R + + + LS+ +S Sbjct: 16 SKVIDSVRPVVETIIDEHGDMLVDMEYVKEKGQNYLRIYVDRQPNGIDIDEIAALSELVS 75 Query: 78 PILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + + Y LE+SSPG +RP+ K+D+ + + + +K+ G + Sbjct: 76 EKLDALDPDPLPDPYVLELSSPGAERPIKTKADWEKALNDYIHVGLYQKIENKKMYEGTL 135 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 ++ LE + + + + + + R Sbjct: 136 KSYNDDEVVLEIKDK----TRRKTLTVPRKLIANIR 167 >gi|218782564|ref|YP_002433882.1| hypothetical protein Dalk_4736 [Desulfatibacillum alkenivorans AK-01] gi|218763948|gb|ACL06414.1| protein of unknown function DUF150 [Desulfatibacillum alkenivorans AK-01] Length = 182 Score = 99.3 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 66/160 (41%), Gaps = 10/160 (6%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEEL 72 R + + + +E V +L+++V++ +G +TL DC + Sbjct: 23 RRVDADRILEQVRKLTGAALEAEGMDLVLAEFKREGGGYILRLYVDK-EGGITLGDCTMV 81 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 S+ + +LD YRLEVSSPG+DRP+ R+ F R+ G ++K Sbjct: 82 SRYVGDLLDAYADEMPRYRLEVSSPGLDRPLTREDHFRRFEGRTALIVTKEPREGRKKFR 141 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G + G L + E+ + + + SARL Sbjct: 142 GVLSGALNGVITLVAD--------EVPMEFALHEIESARL 173 >gi|332295449|ref|YP_004437372.1| Ribosome maturation factor rimP [Thermodesulfobium narugense DSM 14796] gi|332178552|gb|AEE14241.1| Ribosome maturation factor rimP [Thermodesulfobium narugense DSM 14796] Length = 159 Score = 99.3 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 76/158 (48%), Gaps = 9/158 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++++ V+ ++ F + + K +L++F++ + ++L DCE +S+ Sbjct: 1 MKSKDIKEKLLNIVEKVLLDIGFELYDLEYFKQGKRWILRVFIDNLEKPISLDDCELVSK 60 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 +S ILD ++I + LEVSSPGI+R + + SDF R+ G + + +IG Sbjct: 61 KLSAILDYYDLIPESFYLEVSSPGIERKLKKDSDFTRFKGEEIIVIFQKPNISP--IIGI 118 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + G G ++ K+ I+ + + R+ Sbjct: 119 LEGIDSDGNYIIVNTGKSKEK------INRNDVKEVRI 150 >gi|146321699|ref|YP_001201410.1| hypothetical protein SSU98_1852 [Streptococcus suis 98HAH33] gi|259586202|sp|A4W3S1|RIMP_STRS2 RecName: Full=Ribosome maturation factor rimP gi|145692505|gb|ABP93010.1| unknown protein [Streptococcus suis 98HAH33] gi|292559122|gb|ADE32123.1| hypothetical protein SSGZ1_1667 [Streptococcus suis GZ1] Length = 158 Score = 99.3 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 76/159 (47%), Gaps = 9/159 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + +++ I P I+ + V + + + +L IFV++ +G ++L+D +LS+ IS Sbjct: 4 SSIIELVTAAITPAIQT-PYELVDVEYGKMGGDYVLSIFVDK-EGGISLQDTADLSEKIS 61 Query: 78 PILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 PILD + Y LEV+SPG++RP+ + G + ++ + + G + Sbjct: 62 PILDTIKPDPFPDQYMLEVTSPGLERPLKTADAVEKAVGKYIHVKLYQAIDKIKVFEGTL 121 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + T +E + K ++ I + ++ ARL V Sbjct: 122 LSFDGTDLIMEYMDKTRKK----EVTIPYQTVAKARLAV 156 >gi|328465728|gb|EGF36932.1| ribosome maturation protein RimP [Lactobacillus helveticus MTCC 5463] Length = 158 Score = 99.3 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 68/156 (43%), Gaps = 7/156 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAIS 77 + + VI+ +I+E V + ++EK L+I+V+R + + + LS+ +S Sbjct: 2 SKVVDLVRPVIETIIDEHGDMLVDMEYVKEKGQNYLRIYVDRQPNGIDIDEIAALSELVS 61 Query: 78 PILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + + Y LE+SSPG +RP+ ++D+ R V + DK+ G + Sbjct: 62 EKLDTIDPDPLPDPYVLELSSPGAERPITTEADWKRALNDYVHIGLYQKIDDKKVYEGTL 121 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 + LE + + ++ I + R Sbjct: 122 KYYNNDEIVLEVKDK----TRRKKLTIPRKLIAKIR 153 >gi|126640414|ref|YP_001083398.1| hypothetical protein A1S_0334 [Acinetobacter baumannii ATCC 17978] Length = 157 Score = 99.3 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 39/161 (24%), Positives = 67/161 (41%), Gaps = 23/161 (14%) Query: 34 EEMSFRSVQISLLE-EKNLLLQIFVERD-----------------DGNMTLRDCEELSQA 75 E I L K LL+I+++R + + DC ++Q Sbjct: 2 EACGVDLWGIEFLPQGKRSLLRIYIDRPVDENAEPVINEDGEVEQGRGIGVEDCVRVTQQ 61 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 + +LDV + I G Y LEVSSPG DRP + + G VA ++ + +++K K+ Sbjct: 62 VGAMLDVHDPISGEYALEVSSPGWDRPFFQLEQLQGYIGQQVALRLIAAVENRRKFQAKL 121 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 + ++ E G+ + I +++ A LI D Sbjct: 122 LAVDLENEEIQVEVEGK-----HVLDIDSNNIDKANLIYQD 157 >gi|119485068|ref|ZP_01619453.1| hypothetical protein L8106_06459 [Lyngbya sp. PCC 8106] gi|119457296|gb|EAW38421.1| hypothetical protein L8106_06459 [Lyngbya sp. PCC 8106] Length = 172 Score = 99.3 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 63/147 (42%), Gaps = 1/147 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQ-ISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L I + PV E + V + +L++ + + + L DCE++S+A+ Sbjct: 24 LVPKIIDLATPVAEALGLEVVGAVFYTNHSPPVLRVDIRNPNQDTGLDDCEQMSRALEEQ 83 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + I Y LE+SSPGI + + DF+ + G + + ++ GK++ Sbjct: 84 LDTIDFIPDAYVLEISSPGISQILTSDRDFISFKGFPILIRTSEAYKGYKEWSGKLIRRD 143 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDS 166 ET +L ++ R + + Sbjct: 144 ETAVYLNQKGRQMAIPRPVIAEVLLQE 170 >gi|312871843|ref|ZP_07731928.1| conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] gi|311092624|gb|EFQ50983.1| conserved hypothetical protein [Lactobacillus iners LEAF 3008A-a] Length = 146 Score = 99.3 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 67/145 (46%), Gaps = 7/145 (4%) Query: 30 QPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILD--VENII 86 P++ V I ++E N L+I+V+R+ + + + LS+++S LD + + Sbjct: 1 TPLVHARGDELVDIEYVKENNQNYLRIYVDREPNGIDIDEIATLSESVSEQLDLINPDPL 60 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE 146 Y LE+SSPG++RP+ ++D+ + V + ++ G ++ LE Sbjct: 61 PDPYILELSSPGVERPIKTEADWCKAKNDYVHVGLYKKINGQKSYEGTLLDYDMDKIILE 120 Query: 147 KEKRGEKDMNELQIAISFDSLLSAR 171 + + +IAI + + + R Sbjct: 121 I----KIKTQQKKIAIPRNMIANIR 141 >gi|145589411|ref|YP_001156008.1| hypothetical protein Pnuc_1229 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|226696286|sp|A4SY80|RIMP_POLSQ RecName: Full=Ribosome maturation factor rimP gi|145047817|gb|ABP34444.1| protein of unknown function DUF150 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 163 Score = 99.3 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 10/155 (6%) Query: 26 SSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN--MTLRDCEELSQAISPILDVE 83 +I +E + + V+I E LL++ +E D +++ DCE++S +S L VE Sbjct: 4 QQIIAAELENLGYTLVEIE--REAGGLLRVTIENPDYERLISVLDCEKVSHQLSYALPVE 61 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLE+SSPG+DRP+ +DF R+ G V ++ +++G+++ G + G Sbjct: 62 NI--PYERLEISSPGLDRPVKSAADFERFTGMEVDLKLRVAAGNRKNFRGVLQGLLSGEL 119 Query: 144 FLEKEKRG----EKDMNELQIAISFDSLLSARLIV 174 K G D E Q+ S + RL+ Sbjct: 120 NSPDAKFGLLFEGADGAESQLEFSLAEVDKTRLVP 154 >gi|186685821|ref|YP_001869017.1| hypothetical protein Npun_R5776 [Nostoc punctiforme PCC 73102] gi|226707751|sp|B2J958|RIMP_NOSP7 RecName: Full=Ribosome maturation factor rimP gi|186468273|gb|ACC84074.1| protein of unknown function DUF150 [Nostoc punctiforme PCC 73102] Length = 153 Score = 98.9 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L I + PV EE+ V + + +L++ + + L DCE +S+A+ Sbjct: 5 LVPQIIDLATPVAEELGLEVVGVVFHTHQSPPVLRVDIRNPQQDTGLNDCERMSRALEAS 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD I+ Y LEVSSPGI R +V +F+ + G V +Q+ IG+++ Sbjct: 65 LDAAEIVPDTYVLEVSSPGISRQLVTDREFISFKGFPVIISTTPPYDGQQEWIGQLIRRD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 E +L ++ R + I + +L Sbjct: 125 EITLYLNQKGR--------VVEIPRSLITKVQL 149 >gi|223934078|ref|ZP_03626027.1| protein of unknown function DUF150 [Streptococcus suis 89/1591] gi|253752515|ref|YP_003025656.1| hypothetical protein SSUSC84_1671 [Streptococcus suis SC84] gi|253754341|ref|YP_003027482.1| hypothetical protein SSU1646 [Streptococcus suis P1/7] gi|253756275|ref|YP_003029415.1| hypothetical protein SSUBM407_1719 [Streptococcus suis BM407] gi|302024449|ref|ZP_07249660.1| hypothetical protein Ssui0_07814 [Streptococcus suis 05HAS68] gi|330833474|ref|YP_004402299.1| hypothetical protein SSUST3_1700 [Streptococcus suis ST3] gi|223897248|gb|EEF63660.1| protein of unknown function DUF150 [Streptococcus suis 89/1591] gi|251816804|emb|CAZ52447.1| conserved hypothetical protein [Streptococcus suis SC84] gi|251818739|emb|CAZ56575.1| conserved hypothetical protein [Streptococcus suis BM407] gi|251820587|emb|CAR47343.1| conserved hypothetical protein [Streptococcus suis P1/7] gi|319758924|gb|ADV70866.1| hypothetical protein SSUJS14_1808 [Streptococcus suis JS14] gi|329307697|gb|AEB82113.1| hypothetical protein SSUST3_1700 [Streptococcus suis ST3] Length = 156 Score = 98.9 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 76/159 (47%), Gaps = 9/159 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + +++ I P I+ + V + + + +L IFV++ +G ++L+D +LS+ IS Sbjct: 2 SSIIELVTAAITPAIQT-PYELVDVEYGKMGGDYVLSIFVDK-EGGISLQDTADLSEKIS 59 Query: 78 PILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 PILD + Y LEV+SPG++RP+ + G + ++ + + G + Sbjct: 60 PILDTIKPDPFPDQYMLEVTSPGLERPLKTADAVEKAVGKYIHVKLYQAIDKIKVFEGTL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + T +E + K ++ I + ++ ARL V Sbjct: 120 LSFDGTDLIMEYMDKTRKK----EVTIPYQTVAKARLAV 154 >gi|313901627|ref|ZP_07835064.1| protein of unknown function DUF150 [Thermaerobacter subterraneus DSM 13965] gi|313468108|gb|EFR63585.1| protein of unknown function DUF150 [Thermaerobacter subterraneus DSM 13965] Length = 153 Score = 98.9 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 66/160 (41%), Gaps = 10/160 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ + +P+ E+ + + LQ V+R +G +T+ +C S+ Sbjct: 1 MSNRKVEAAVAQLAEPLAEQRGLVLLDVEYRREGGRWFLQCVVDR-EGGVTMDECAAFSE 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+ P+L+ + + +EV SPG+DR + +F + G V +++ G+ Sbjct: 60 ALDPVLEGVDGLAEDVVVEVMSPGLDRTLRNDREFAWFRGREVEVTTYRPVDGRRRFQGR 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + G + + E I D++ +L V Sbjct: 120 LEGLEDGHVVV--------AGREGIHRIPRDAVAKTQLQV 151 >gi|297588446|ref|ZP_06947089.1| conserved hypothetical protein [Finegoldia magna ATCC 53516] gi|297573819|gb|EFH92540.1| conserved hypothetical protein [Finegoldia magna ATCC 53516] Length = 154 Score = 98.9 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 9/162 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQ 74 L +++ + P+IE+ + + +L ++E+D+G +++ DCE ++ Sbjct: 1 MNKKYLRELMNNDLSPLIEDTGIDFYDVEYSNQNGKNILTFYIEKDEGLISIDDCELINN 60 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 I+ LD + I Y LE++S I P R DF + G+VV + K++ G Sbjct: 61 RITDKLDEIDPISDPYYLEIASVDITTPFTRDKDFKKNLGNVVIVNLYQKLDSKKEFKGI 120 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 + ++ LE EK QI I ++ S +L + D Sbjct: 121 LKDFNDQEISLELEK--------NQIKIERSNISSIKLSLFD 154 >gi|161507685|ref|YP_001577639.1| hypothetical protein lhv_1346 [Lactobacillus helveticus DPC 4571] gi|172048309|sp|A8YVR1|RIMP_LACH4 RecName: Full=Ribosome maturation factor rimP gi|160348674|gb|ABX27348.1| hypothetical protein lhv_1346 [Lactobacillus helveticus DPC 4571] Length = 158 Score = 98.9 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 68/156 (43%), Gaps = 7/156 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAIS 77 + + V++ +I+E V + ++EK L+I+V+R + + + LS+ +S Sbjct: 2 SKVVDLVRPVVETIIDEHGDMLVDMEYVKEKGQNYLRIYVDRQPNGIDIDEIAALSELVS 61 Query: 78 PILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + + Y LE+SSPG +RP+ ++D+ R V + DK+ G + Sbjct: 62 EKLDTIDPDPLPDPYVLELSSPGAERPIKTEADWKRALNDYVHIGLYQKIDDKKVYEGTL 121 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 + LE + + ++ I + R Sbjct: 122 KYYNNDEIVLEVKDK----TRRKKLTIPRKLIAKIR 153 >gi|325912470|ref|ZP_08174863.1| hypothetical protein HMPREF0522_0261 [Lactobacillus iners UPII 143-D] gi|325475717|gb|EGC78890.1| hypothetical protein HMPREF0522_0261 [Lactobacillus iners UPII 143-D] Length = 145 Score = 98.5 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 67/144 (46%), Gaps = 7/144 (4%) Query: 31 PVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILD--VENIIE 87 P++ V I ++E N L+I+V+R+ + + + LS+++S LD + + Sbjct: 1 PLVHARGDELVDIEYVKENNQNYLRIYVDREPNGIDIDEIATLSESVSEQLDLINPDPLP 60 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LE+SSPG++RP+ ++D+ + V + ++ G ++ LE Sbjct: 61 DPYILELSSPGVERPIKTEADWCKAKNDYVHVGLYKKINGQKSYEGTLLDYDMDKIILEI 120 Query: 148 EKRGEKDMNELQIAISFDSLLSAR 171 + + +IAI + + + R Sbjct: 121 ----KIKTQQQKIAIPRNMIANIR 140 >gi|171463769|ref|YP_001797882.1| protein of unknown function DUF150 [Polynucleobacter necessarius subsp. necessarius STIR1] gi|226696205|sp|B1XV91|RIMP_POLNS RecName: Full=Ribosome maturation factor rimP gi|171193307|gb|ACB44268.1| protein of unknown function DUF150 [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 163 Score = 98.5 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 46/155 (29%), Positives = 77/155 (49%), Gaps = 10/155 (6%) Query: 26 SSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN--MTLRDCEELSQAISPILDVE 83 VI +E + + V+I E LL++ +E D +T+ DCE++S +S L VE Sbjct: 4 QQVISAELENLGYSLVEIE--REAGGLLRVTIENPDYERLITVLDCEKVSHQLSYTLPVE 61 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NI + RLE+SSPG+DRP+ +DF R+ G V ++ +++G+++ G++ G Sbjct: 62 NI--PYERLEISSPGLDRPVKSAADFQRFAGMEVDLKLRVAAGNRKNFRGELQGLLSGEL 119 Query: 144 FLEKEKRG----EKDMNELQIAISFDSLLSARLIV 174 K G D Q+ S + RL+ Sbjct: 120 NSPDAKFGLVFEGADGQSSQLEFSLAEVDKTRLVP 154 >gi|309808386|ref|ZP_07702287.1| conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] gi|308168371|gb|EFO70488.1| conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] Length = 145 Score = 98.5 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 67/144 (46%), Gaps = 7/144 (4%) Query: 31 PVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILD--VENIIE 87 P++ V I ++E N L+I+V+R+ + + + LS+++S LD + + Sbjct: 1 PLVHARGDELVDIEYVKENNQNYLRIYVDREPNGIDIDEIATLSESVSEQLDLINPDPLP 60 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LE+SSPG++RP+ ++D+ + V + ++ G ++ LE Sbjct: 61 DPYILELSSPGVERPIKTEADWCKAKNDYVHVGLYKKINGQKSYEGTLLDYDMDKIILEI 120 Query: 148 EKRGEKDMNELQIAISFDSLLSAR 171 + + +IAI + + + R Sbjct: 121 ----KIKTQQKKIAIPRNMIANIR 140 >gi|257063652|ref|YP_003143324.1| hypothetical protein Shel_09340 [Slackia heliotrinireducens DSM 20476] gi|256791305|gb|ACV21975.1| uncharacterized conserved protein [Slackia heliotrinireducens DSM 20476] Length = 158 Score = 98.5 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 65/157 (41%), Gaps = 7/157 (4%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQA 75 ++ + ++P ++ V I ++ K ++++++ + +T D Sbjct: 1 MLSAKEAELLASLEPRAQQEGMEIVTIEIVGSRKAPTIRVYLDTPE-GVTFDDIAAAQVW 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 ++ I++ + G Y LEVSSPGIDRP+ F R+ G V + + ++ Sbjct: 60 VNEIVEEIDPFPGAYTLEVSSPGIDRPLRTPEHFARFAGEDVYVMTAKPFDGQSRFNAQL 119 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G E + + ++AI+ + + A + Sbjct: 120 NGFDEESGCVLI-----GLESGEELAIALNDVKKAHV 151 >gi|317057641|ref|YP_004106108.1| hypothetical protein Rumal_3009 [Ruminococcus albus 7] gi|315449910|gb|ADU23474.1| protein of unknown function DUF150 [Ruminococcus albus 7] Length = 181 Score = 98.5 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 68/168 (40%), Gaps = 4/168 (2%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 A ++ + QP+ +E+ + + L++ +++ DG +T+ DCE ++ + IL Sbjct: 14 ADIVAGLAQPLADELGLFLWDVRFEKEGATWYLRVLIDK-DGGVTMEDCENFTRPFNKIL 72 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG-DKQKLIGKIMGTS 139 D + I Y E SPG+ R + + F G VV ++ +++ I ++G Sbjct: 73 DEADPIPQSYVFECGSPGLGRELRKPIHFEVCIGDVVRVRLIRPDENGEREFIVGLVGYD 132 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYG 187 E + + E + + + +L +L L Sbjct: 133 EEEKLIACQTLDENGDGAANVQFNLNDCAFVKLYDDGDL-EEELAGAK 179 >gi|282898606|ref|ZP_06306594.1| protein of unknown function DUF150 [Cylindrospermopsis raciborskii CS-505] gi|281196474|gb|EFA71383.1| protein of unknown function DUF150 [Cylindrospermopsis raciborskii CS-505] Length = 164 Score = 98.5 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 1/147 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L I + P+ E+ V + ++ +L++ + + +L DCE++S+A+ Sbjct: 16 LVPQIIDLATPLAAELGLEVVGMVFHTNQRPPILRVDIRNPQQDTSLNDCEKMSRALETS 75 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD II Y LEVSSPGI R + +F+ + G V +++ G+++ Sbjct: 76 LDAAEIILDTYVLEVSSPGISRELATDREFISFKGFPVVVSTCDPDDGEKEWKGQLIRRD 135 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDS 166 ET +L ++ R + L + D Sbjct: 136 ETKIYLNQKGRVVGILRSLVTKVQLDD 162 >gi|258645577|ref|ZP_05733046.1| hypothetical protein GCWU000321_00427 [Dialister invisus DSM 15470] gi|260402935|gb|EEW96482.1| hypothetical protein GCWU000321_00427 [Dialister invisus DSM 15470] Length = 156 Score = 98.5 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 80/157 (50%), Gaps = 5/157 (3%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 G + + +++P ++++ + + + E+N +L++F++++D + L DC+++S+ Sbjct: 1 MGRKEIELEAERLLEPALKQLGIELIDVEYVRERNWILRVFIDKED-GVDLNDCQQISEK 59 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +LD ++I +Y LEVSSPG+DR + + DFLR+ G V ++ + +G + Sbjct: 60 AGELLDEADLISANYMLEVSSPGLDRVLKKDKDFLRYAGEEVDVKLFAPLEE----VGGV 115 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + L + + + I + D + R+ Sbjct: 116 KAFTAVLDGLSDDGQIRLIFQDKTITLGKDKISQIRI 152 >gi|254412382|ref|ZP_05026156.1| conserved hypothetical protein [Microcoleus chthonoplastes PCC 7420] gi|196180692|gb|EDX75682.1| conserved hypothetical protein [Microcoleus chthonoplastes PCC 7420] Length = 153 Score = 98.5 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 67/147 (45%), Gaps = 1/147 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQ-ISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + + PV E++ V + + +L++ + DG+ L DCE +S+A+ Sbjct: 5 LIPQLIDLATPVAEKLGLEFVGAVFHTNRRPPVLRVDIRNRDGDTGLDDCERMSRALEAE 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD ++I Y LE+SSPGI + + DF+ + G V ++ GK++ Sbjct: 65 LDAVDLIPDAYVLEISSPGISQELTTDRDFIAFKGFSVVVNTAEPDQGHKEWRGKLIRRD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDS 166 +T ++ ++ R + + FD Sbjct: 125 DTRVYINQKGRAIAIPRDQVTKVQFDE 151 >gi|325957050|ref|YP_004292462.1| ribosome maturation protein RimP [Lactobacillus acidophilus 30SC] gi|325333615|gb|ADZ07523.1| ribosome maturation protein RimP [Lactobacillus acidophilus 30SC] gi|327183773|gb|AEA32220.1| ribosome maturation protein RimP [Lactobacillus amylovorus GRL 1118] Length = 158 Score = 98.2 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 69/156 (44%), Gaps = 7/156 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAIS 77 + + V++P+I+E V + ++EK L+I+V+R+ + + + LS+ +S Sbjct: 2 SKVIDLVRPVVEPIIDEHGDMLVDMEYVKEKGQNYLRIYVDREPNGIDIDEIAALSELVS 61 Query: 78 PILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + Y LE+SSPG +RP+ ++D+ + + + DK+ G + Sbjct: 62 EKLDTINPDPFPEPYVLELSSPGAERPIKTEADWKKALNDYIHIGLYQKIKDKKVYEGTL 121 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 ++ LE + + + + + R Sbjct: 122 KSYNDEEIVLEVRDK----TRRKTLTVPRKLIANIR 153 >gi|309809702|ref|ZP_07703557.1| conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] gi|325912543|ref|ZP_08174930.1| hypothetical protein HMPREF0523_0654 [Lactobacillus iners UPII 60-B] gi|308169982|gb|EFO72020.1| conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] gi|325478152|gb|EGC81277.1| hypothetical protein HMPREF0523_0654 [Lactobacillus iners UPII 60-B] Length = 145 Score = 98.2 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 66/144 (45%), Gaps = 7/144 (4%) Query: 31 PVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILD--VENIIE 87 P++ V I ++E N L+I+V+R+ + + + LS+++S LD + + Sbjct: 1 PLVHARGDELVDIEYVKENNQNYLRIYVDREPNGIDIDEIATLSESVSEQLDLINPDPLP 60 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 Y LE+SSPG++RP+ ++D+ + V + ++ G ++ LE Sbjct: 61 DPYILELSSPGVERPIKTEADWCKAKDDYVHVGLYKKINGQKSYEGTLLDYDMDKIILEI 120 Query: 148 EKRGEKDMNELQIAISFDSLLSAR 171 + + +I I + + + R Sbjct: 121 ----KIKTQQQKITIPRNMIANIR 140 >gi|139436992|ref|ZP_01771152.1| Hypothetical protein COLAER_00126 [Collinsella aerofaciens ATCC 25986] gi|133776639|gb|EBA40459.1| Hypothetical protein COLAER_00126 [Collinsella aerofaciens ATCC 25986] Length = 170 Score = 98.2 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 69/162 (42%), Gaps = 10/162 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDD-GNMTLRDCEELS 73 I ++ V + V + L+ K +++ +E + +++L D + Sbjct: 7 MVKTKTEQAIIDALEAVAPQHDIDIVDVELVGATKAPCVRVRIEGAEGQSLSLNDVTANT 66 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 + + +++ + I Y LEVSSPG+ RP+ R SDF R+ G ++ ++K G Sbjct: 67 KWVGDVIEELDPISSSYTLEVSSPGMARPLRRPSDFARFVGENCEL-TSTATEGRRKYAG 125 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 KI +ET LE E + + F + +L T Sbjct: 126 KIASATETSVTLELED-------GESVTLDFSDVKKCKLKPT 160 >gi|289522944|ref|ZP_06439798.1| hypothetical protein HMPREF1705_00858 [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503487|gb|EFD24651.1| hypothetical protein HMPREF1705_00858 [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 161 Score = 98.2 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 11/143 (7%) Query: 35 EMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILD-VENIIEGHYRL 92 + + V + L+ E ++L+I++ G + ++DCE +S+ + LD E I G Y L Sbjct: 21 GLGYDFVGMELVHEHGRMILRIYINTP-GGINVKDCETVSRKVDKFLDSREEIFGGRYYL 79 Query: 93 EVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT-SETGFFLEKEKRG 151 EVSSPG+D P+ DF + G V + G ++ GKI+ S L + Sbjct: 80 EVSSPGLDAPLFYIKDFKNYVGKTVRIKTHDPVGSRRNFKGKIIEILSNNDIKLGLDD-- 137 Query: 152 EKDMNELQIAISFDSLLSARLIV 174 +I I F ++ ARL+ Sbjct: 138 -----GTEILIPFQNISKARLVP 155 >gi|315038576|ref|YP_004032144.1| hypothetical protein LA2_07130 [Lactobacillus amylovorus GRL 1112] gi|312276709|gb|ADQ59349.1| hypothetical protein LA2_07130 [Lactobacillus amylovorus GRL 1112] Length = 158 Score = 98.2 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 69/156 (44%), Gaps = 7/156 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAIS 77 + + V++P+I+E V + ++EK L+I+V+R+ + + + LS+ +S Sbjct: 2 SKVIDLVRPVVEPIIDEHGDMLVDMEYVKEKGQNYLRIYVDREPNGIDIDEIAALSELVS 61 Query: 78 PILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + Y LE+SSPG +RP+ ++D+ + + + DK+ G + Sbjct: 62 EKLDTINPDPFPEPYVLELSSPGAERPIKTEADWKKALNDYIHIGLYQKIMDKKVYEGTL 121 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 ++ LE + + + + + R Sbjct: 122 KSYNDEEIVLEVRDK----TRRKTLTVPRKLIANIR 153 >gi|324991724|gb|EGC23656.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK353] Length = 177 Score = 98.2 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 71/157 (45%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + VI+P I + V I + + +L +FV++ + +T+ D +L+ ISP+ Sbjct: 25 IVELVREVIEPAILA-PYELVDIEYGKMGGDYVLSVFVDKPE-GITVNDTADLTDIISPL 82 Query: 80 LDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LEV+SPG++RP+ K G + + + ++ G ++ Sbjct: 83 LDQIKPDPFPEQYFLEVTSPGLERPLKTKEQLADAVGSYIHVSLYKAVDKQKVFEGTLLS 142 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + K ++ I + + ARL V Sbjct: 143 FEEDVLHMEYLDKTRKK----EVEIPYSLVSKARLAV 175 >gi|323350355|ref|ZP_08086019.1| protein of hypothetical function DUF150 [Streptococcus sanguinis VMC66] gi|322123428|gb|EFX95104.1| protein of hypothetical function DUF150 [Streptococcus sanguinis VMC66] gi|327472755|gb|EGF18182.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK408] Length = 177 Score = 97.8 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 69/159 (43%), Gaps = 9/159 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + + VI+P I + V I + + +L +FV++ + +T+ D +L+ IS Sbjct: 23 TTIVELVREVIEPAILA-PYELVDIEYGKMGGDYVLSVFVDKPE-GITVNDTADLTDIIS 80 Query: 78 PILDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 P+LD + Y LEV+SPG++RP+ K G + + + ++ G + Sbjct: 81 PLLDQIKPDPFPEQYFLEVTSPGLERPLKTKEQLADAVGSYIHVSLYKAVDKQKVFEGTL 140 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + +E + ++ I + + ARL V Sbjct: 141 LSFEGEVLHMEYLDK----TRRKEVEIPYSLVSKARLAV 175 >gi|282898465|ref|ZP_06306455.1| Protein of unknown function DUF150 [Raphidiopsis brookii D9] gi|281196631|gb|EFA71537.1| Protein of unknown function DUF150 [Raphidiopsis brookii D9] Length = 163 Score = 97.8 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 1/147 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L I + P+ E+ V + + +L++ + + +L DCE++S+A+ Sbjct: 15 LVPQIIDLATPLAAELGLEVVGMVFHTNQCPPILRVDIRNPQQDTSLNDCEKMSRALESY 74 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD II Y LEVSSPGI R + +F+ + G V +++ G+++ Sbjct: 75 LDAAGIIPDTYVLEVSSPGISRQLETDREFISFKGFPVVVSTCDPDDGEKEWKGQLIRRD 134 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDS 166 ET +L ++ R + L + D Sbjct: 135 ETKIYLNQKGRVVGILRSLVTKVQLDD 161 >gi|300173096|ref|YP_003772262.1| hypothetical protein LEGAS_0795 [Leuconostoc gasicomitatum LMG 18811] gi|299887475|emb|CBL91443.1| conserved hypothetical protein [Leuconostoc gasicomitatum LMG 18811] Length = 158 Score = 97.8 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 71/162 (43%), Gaps = 14/162 (8%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGN-MTLRDCEELSQ 74 + I +I P+++ ++ +E +L+I +++ + +T+ D +Q Sbjct: 1 MVNKVEQRIIELITPIVDRRKELLWDLTYTKEGGQKVLRILLDKPNHQFITMADLTAFTQ 60 Query: 75 AISPILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWN--GHVVACEIVLSSGDKQK 130 ++ +LD + I Y L++SSPG DRP+ + F + + ++ ++K Sbjct: 61 EVNELLDTSDPDPIPEAYLLDISSPGADRPLKQPWHFKWAQDGNENILMSLFVAKNGQKK 120 Query: 131 LIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 GKI ++ G L + +I ++FD + A L Sbjct: 121 WQGKIKTLTDNGLVLLTD--------HGEIILNFDEIAKAVL 154 >gi|229829177|ref|ZP_04455246.1| hypothetical protein GCWU000342_01262 [Shuttleworthia satelles DSM 14600] gi|229792340|gb|EEP28454.1| hypothetical protein GCWU000342_01262 [Shuttleworthia satelles DSM 14600] Length = 157 Score = 97.8 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 74/149 (49%), Gaps = 2/149 (1%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELS 73 + + + P++E+ F V + ++E L+ ++++ G +T+ DC ++S Sbjct: 1 MSRKETYEEKTEAFLLPILEKDGFSLVDVEYVKEGGQYYLRAYIDKP-GGITIDDCVDVS 59 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 + ++ ILD E+ I+G Y EVSSPG+ RP+ ++ DF R V + + +++ +G Sbjct: 60 REMNEILDREDYIDGTYTFEVSSPGLGRPIRKERDFARNLDKEVEIKSYRAIDGEKEFLG 119 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAI 162 + S+ +E E+ K E I Sbjct: 120 LLRDYSKADVTIESEEGIRKICREDIALI 148 >gi|55820433|ref|YP_138875.1| hypothetical protein stu0340 [Streptococcus thermophilus LMG 18311] gi|55822317|ref|YP_140758.1| hypothetical protein str0340 [Streptococcus thermophilus CNRZ1066] gi|81559802|sp|Q5M1C3|RIMP_STRT1 RecName: Full=Ribosome maturation factor rimP gi|81560972|sp|Q5M5V9|RIMP_STRT2 RecName: Full=Ribosome maturation factor rimP gi|55736418|gb|AAV60060.1| conserved hypothetical protein [Streptococcus thermophilus LMG 18311] gi|55738302|gb|AAV61943.1| conserved hypothetical protein [Streptococcus thermophilus CNRZ1066] Length = 163 Score = 97.8 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 71/165 (43%), Gaps = 9/165 (5%) Query: 13 PRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEE 71 + + +++V+ P I + + V I + + +L + +++ G +T+ D + Sbjct: 3 KEVIMSQKIIDLVTAVVAPAIPD-PYELVDIEYEKIGSDYILSVLIDKP-GGITVEDTAD 60 Query: 72 LSQAISPILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ 129 L++ ISP+LD + Y LEVSSPG++RP+ K G + + + + Sbjct: 61 LTEIISPLLDTIQPDPFPDQYMLEVSSPGLERPLKTKEALKNAVGQYINVSLYKAIDKIK 120 Query: 130 KLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G ++ ++ + + I + ++ ARL V Sbjct: 121 IFQGDLLAFDGETLTIDYLDK----TRHKTVEIPYQTVAKARLAV 161 >gi|25010486|ref|NP_734881.1| hypothetical protein gbs0413 [Streptococcus agalactiae NEM316] gi|50403657|sp|P62599|RIMP_STRA5 RecName: Full=Ribosome maturation factor rimP gi|50403658|sp|P62600|RIMP_STRA3 RecName: Full=Ribosome maturation factor rimP gi|23094839|emb|CAD46057.1| unknown [Streptococcus agalactiae NEM316] Length = 159 Score = 97.8 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 69/163 (42%), Gaps = 9/163 (5%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELS 73 + + + ++ V+ P I+ F V + + + +L I +++ G +T+ D +L+ Sbjct: 1 MIANQTIVDIVTQVVTPAIQA-PFELVDVEYEKMGGDYVLSILIDKP-GGITVEDTAQLT 58 Query: 74 QAISPILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +SP+LD + Y LEVSSPG++RP+ G + + S + Sbjct: 59 DVVSPLLDTIQPDPFPEQYMLEVSSPGLERPLKTAEALSNAVGSYINVSLYKSIDKVKIF 118 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G ++ ++ + + I + ++ ARL V Sbjct: 119 EGDLLSFDGETLTIDYMDK----TRHKTVDIPYQTVAKARLAV 157 >gi|224367579|ref|YP_002601742.1| hypothetical protein HRM2_04640 [Desulfobacterium autotrophicum HRM2] gi|259585763|sp|C0QHM0|RIMP_DESAH RecName: Full=Ribosome maturation factor rimP gi|223690295|gb|ACN13578.1| conserved hypothetical protein [Desulfobacterium autotrophicum HRM2] Length = 155 Score = 97.4 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 40/154 (25%), Positives = 75/154 (48%), Gaps = 10/154 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I S+ +P+ F V + + ++ ++++I++++ G +TL DC +++ + I Sbjct: 11 IVTAIESIAEPLCIAEGFELVHVECVSDQGGMIVRIYLDKP-GGITLDDCVHMTRHLGDI 69 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +DVE YRLE+SSPG RP+ + +DF R+ G V E V G + K G + Sbjct: 70 IDVELEEISAYRLEISSPGAKRPLKKLADFERFLGSRVKVEAVEPIGGRLKFTGILSKVQ 129 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + E +N + F+ + +RL Sbjct: 130 DGC--------VEVVVNNEPVVFHFEQISKSRLA 155 >gi|297537314|ref|YP_003673083.1| hypothetical protein M301_0118 [Methylotenera sp. 301] gi|297256661|gb|ADI28506.1| protein of unknown function DUF150 [Methylotenera sp. 301] Length = 161 Score = 97.4 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 80/166 (48%), Gaps = 26/166 (15%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDG-----NMTLRDCEELSQAIS 77 D+ ++I+ + ++ + V + + + LL++F+++ + ++ + DC +S + Sbjct: 2 QDLHTLIEKSVSQLGYELVDLEISN-RGKLLRVFIDKLNPADIKDSVNIDDCSLVSNQLG 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD---------- 127 +L VEN I + RLEVSSPG+DR + +++DF+R+ G ++ + D Sbjct: 61 NLLAVENDI-DYDRLEVSSPGMDRVLKKEADFVRFIGERAQIKLRVGIKDESVTATETTL 119 Query: 128 -KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ +G I G + +E + K + ++ ARL Sbjct: 120 PRKTFLGFIKGVQDGLVLIEFDGVVYKM--------ALSNIDKARL 157 >gi|307297717|ref|ZP_07577523.1| protein of unknown function DUF150 [Thermotogales bacterium mesG1.Ag.4.2] gi|306916977|gb|EFN47359.1| protein of unknown function DUF150 [Thermotogales bacterium mesG1.Ag.4.2] Length = 177 Score = 97.4 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 68/157 (43%), Gaps = 7/157 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 L ++ + V + + + L K L++I +++ DG +++ DCE S Sbjct: 27 EDLKKELFELANEVASNLGYSIYDLGLGRRGKKRLVKITIDKLDGYVSISDCESFSADFG 86 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD +++ Y L V SPG++R + D++R+ G + LIGKI+ Sbjct: 87 RALDSADLVPFSYDLVVESPGLERALRDLKDYVRFTGEKAKVILKEPIEGVSVLIGKIIS 146 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + G+ +IA F ++ A L + Sbjct: 147 CENDVVTVESSENGK------EIAFHFSNVKRANLKL 177 >gi|326316664|ref|YP_004234336.1| ribosome maturation factor rimP [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373500|gb|ADX45769.1| Ribosome maturation factor rimP [Acidovorax avenae subsp. avenae ATCC 19860] Length = 201 Score = 97.4 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 75/187 (40%), Gaps = 41/187 (21%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVE-----------------RDDGNMTLR 67 + +++ + + + V+I LL+I ++ + +T+ Sbjct: 3 LQQIVEQTVAGLGYDLVEIERSAGG--LLRITIDLPWQPPVEGAASDAAPAGPEAFVTVE 60 Query: 68 DCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG- 126 DCE++++ + L+V+ + + RLEVSSPGIDRP+ + DF R+ G VV + G Sbjct: 61 DCEKVTRQLQFALEVDGV--DYKRLEVSSPGIDRPLRHEQDFQRFAGEVVDITLKAPIGD 118 Query: 127 --------DKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQ-----------IAISFDSL 167 +++K G + T G+ + + + + D L Sbjct: 119 AAAGQVNANRKKFRGTLERTEAGGWQIVWSDEPPPKPGQKVSKKRVPPPLQALGFTLDEL 178 Query: 168 LSARLIV 174 ARL Sbjct: 179 RDARLAP 185 >gi|222099942|ref|YP_002534510.1| hypothetical protein CTN_0968 [Thermotoga neapolitana DSM 4359] gi|254807290|sp|B9K861|RIMP_THENN RecName: Full=Ribosome maturation factor rimP gi|221572332|gb|ACM23144.1| Hypothetical Protein CTN_0968 [Thermotoga neapolitana DSM 4359] Length = 150 Score = 97.4 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 67/158 (42%), Gaps = 13/158 (8%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQ 74 + + + + + E+ I E + +L++ ++ G +++RDCE S+ Sbjct: 1 MFEEMIVEKVRKEAERIAEKQGLEIFDIQYRRESRGWVLRVVIDNPVGYVSVRDCELFSR 60 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 + LD E++IE Y LEVSSPG+DRP+ D+ R+ G + + IG+ Sbjct: 61 ELERFLDREDLIEHSYTLEVSSPGLDRPLRGPKDYQRFTGKLAKIITKDG----KTFIGR 116 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 I + + EK I + + A L Sbjct: 117 IESFVDGIVTISDEKGKH--------EIDIEDVRKANL 146 >gi|154249423|ref|YP_001410248.1| hypothetical protein Fnod_0736 [Fervidobacterium nodosum Rt17-B1] gi|259585774|sp|A7HL08|RIMP_FERNB RecName: Full=Ribosome maturation factor rimP gi|154153359|gb|ABS60591.1| protein of unknown function DUF150 [Fervidobacterium nodosum Rt17-B1] Length = 152 Score = 97.4 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 72/158 (45%), Gaps = 13/158 (8%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ +P++ M + ++ +L I +++ D ++ RDCE +S Sbjct: 3 LSQKEIIERVRAIAEPIVTSMGLELFDVKYRIQAGKWVLSIIIDKLDDYVSTRDCELVSY 62 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 I +LD + I G Y LEVSSPG+DRP+ + DF R+ G + + K+ G Sbjct: 63 EIEKVLDSHDFIPGRYYLEVSSPGLDRPLKKIEDFRRFVGKL------VKVKTKKTYRGY 116 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 I+ + K ++ I I +D + SA L Sbjct: 117 IVDVNMET------KEIILRVDNENITIKYDDVKSANL 148 >gi|319941975|ref|ZP_08016296.1| ribosome maturation factor rimP [Sutterella wadsworthensis 3_1_45B] gi|319804628|gb|EFW01498.1| ribosome maturation factor rimP [Sutterella wadsworthensis 3_1_45B] Length = 186 Score = 97.4 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 42/177 (23%), Positives = 82/177 (46%), Gaps = 30/177 (16%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 +S++++ +E + + V + L+ + + I +ER DG ++L DCE +S ++ + VE+ Sbjct: 7 LSALVKKTVEGLGYELVDVERLQRGLVRVTIDIER-DGGISLEDCERVSDQLTHLFTVED 65 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG-------DKQKLIGKIMG 137 + + RLEVSSPG++RP+ R D+ R+ G + E+ ++KL G+I+G Sbjct: 66 V--SYERLEVSSPGVERPLKRARDWERFTGELAWVELFAPLKAEGFPEAGRRKLEGRIVG 123 Query: 138 TSETG--------------------FFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 S L K+ + +++ + A L+V Sbjct: 124 ISGESGAEQIEFDYFEVDIARTPRAAALRARKKQTVEAAPVRVVFPLSEVEQAHLLV 180 >gi|149926273|ref|ZP_01914535.1| hypothetical protein LMED105_02033 [Limnobacter sp. MED105] gi|149825091|gb|EDM84303.1| hypothetical protein LMED105_02033 [Limnobacter sp. MED105] Length = 171 Score = 97.4 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 6/143 (4%) Query: 32 VIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYR 91 VI + I E N LL+I ++ +T+ DCE++S ++ + VEN+ + R Sbjct: 31 VISSLGLEVADIE--REGNGLLRIMIDSP-TGVTVEDCEKVSHQLTHLFTVENV--NYER 85 Query: 92 LEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRG 151 LE+SSPG+DR + RK DF R+ V+ + + ++++ G + E + + G Sbjct: 86 LEISSPGVDRVLRRKKDFERFLDQEVSLKFKRAINNQKQFKGVLQKGKEQAWGVLVTPDG 145 Query: 152 EKDMNELQIAISFDSLLSARLIV 174 K+ + L ARL+ Sbjct: 146 -KNAEPYLLDFEITDLAGARLVP 167 >gi|325695171|gb|EGD37072.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK150] gi|328944977|gb|EGG39134.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK1087] gi|332358011|gb|EGJ35844.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK1056] Length = 177 Score = 97.4 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 70/157 (44%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + VI+P I + V I + + +L +FV++ + +T+ D +L+ ISP+ Sbjct: 25 IVELVREVIEPAILA-PYELVDIEYGKMGGDYVLSVFVDKPE-GITVNDTADLTDIISPL 82 Query: 80 LDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LEV+SPG++RP+ K G + + + ++ G ++ Sbjct: 83 LDQIKPDPFPEQYFLEVTSPGLERPLKTKEQLSDAVGSYIHVSLYKAVDKQKVFEGTLLS 142 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + ++ I + + ARL V Sbjct: 143 FEEDVLHMEYLDK----TRRKEVEIPYSLVSKARLAV 175 >gi|327467114|gb|EGF12624.1| hypothetical protein HMPREF9386_2224 [Streptococcus sanguinis SK330] Length = 177 Score = 97.4 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 70/157 (44%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + VI+P I + V I + + +L +FV++ + +T+ D +L+ ISP+ Sbjct: 25 IVELVREVIEPAILAH-YELVDIEYGKMGGDYVLSVFVDKPE-GITVNDTADLTDIISPL 82 Query: 80 LDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LEV+SPG++RP+ K G + + + ++ G ++ Sbjct: 83 LDQIKPDPFPEQYFLEVTSPGLERPLKTKEQLADTVGSYIHVSLYKAVDKQKVFEGTLLS 142 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + ++ I + + ARL V Sbjct: 143 FEEDVLHMEYLDK----TRRKEVEIPYSLVSKARLAV 175 >gi|320547938|ref|ZP_08042221.1| protein of hypothetical function DUF150 [Streptococcus equinus ATCC 9812] gi|320447478|gb|EFW88238.1| protein of hypothetical function DUF150 [Streptococcus equinus ATCC 9812] Length = 150 Score = 97.4 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 71/153 (46%), Gaps = 9/153 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD-- 81 ++ V+ P I+E F V + + + +L I +++ G +T+ D +L++ ISP+LD Sbjct: 2 VTEVVAPAIKE-PFELVDVEYGKMGSDYVLSILIDKP-GGITVNDTADLTEIISPLLDAI 59 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + Y LEVSSPG++RP+ K + G V + + + G ++ Sbjct: 60 KPDPFPEQYMLEVSSPGLERPLKTKEALEKAVGSYVNVSLYKAIDKVKVFQGDLVAFDGE 119 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ + K + I + ++ ARL V Sbjct: 120 TLTIDYLDKTRKK----TVEIPYSTVAKARLAV 148 >gi|307155147|ref|YP_003890531.1| hypothetical protein Cyan7822_5377 [Cyanothece sp. PCC 7822] gi|306985375|gb|ADN17256.1| protein of unknown function DUF150 [Cyanothece sp. PCC 7822] Length = 153 Score = 97.4 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 73/153 (47%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I + P+ E++ V++ ++ +L++ + + +L DCE++S+++ Sbjct: 5 VIPQIIDLATPIAEQLGLEIVEVVFQTNKRPPVLRVDIRNKSSDTSLNDCEQMSRSLEAN 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD +I G Y LE+SSPGI R + +F+ + G + + ++++ GK+ G Sbjct: 65 LDATELIPGSYVLEISSPGISRQLNSDREFIVFKGFDIIVKTDTPFENQKEWRGKLQGRD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 E +L K+ R IAI + +L Sbjct: 125 EQAVYLNKKGR--------VIAIPRQLITKVQL 149 >gi|125718694|ref|YP_001035827.1| hypothetical protein SSA_1901 [Streptococcus sanguinis SK36] gi|259595394|sp|A3CQ22|RIMP_STRSV RecName: Full=Ribosome maturation factor rimP gi|125498611|gb|ABN45277.1| Conserved uncharacterized protein [Streptococcus sanguinis SK36] gi|325688732|gb|EGD30741.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK115] gi|332364629|gb|EGJ42398.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK1059] Length = 177 Score = 97.4 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 70/157 (44%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + VI+P I + V I + + +L +FV++ + +T+ D +L+ ISP+ Sbjct: 25 IVELVREVIEPAILA-PYELVDIEYGKMGGDYVLSVFVDKPE-GITVNDTADLTDIISPL 82 Query: 80 LDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LEV+SPG++RP+ K G + + + ++ G ++ Sbjct: 83 LDQIKPDPFPEQYFLEVTSPGLERPLKTKEQLADAVGSYIHVSLYKAVDKQKVFEGTLLS 142 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + ++ I + + ARL V Sbjct: 143 FEEDVLHMEYLDK----TRRKEVEIPYSLVSKARLAV 175 >gi|75908092|ref|YP_322388.1| hypothetical protein Ava_1871 [Anabaena variabilis ATCC 29413] gi|91208393|sp|Q3MBZ3|RIMP_ANAVT RecName: Full=Ribosome maturation factor rimP gi|75701817|gb|ABA21493.1| Protein of unknown function DUF150 [Anabaena variabilis ATCC 29413] Length = 153 Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 9/146 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I+ + PV E++ V I ++ +L++ + + L DCE +S+A+ LD Sbjct: 9 ITDLAIPVAEQLGLEVVGIVFHTNQRPPVLRVDIRNPQQDTGLDDCERMSRALEAALDAT 68 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 II Y LEVSSPGI R +V +F+ + G V +Q+ IG+++ ET Sbjct: 69 EIIPDAYVLEVSSPGISRQLVTDREFISFKGFPVIVSTSPPHEGQQEWIGQLIRRDETKV 128 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLS 169 ++ ++ R I I + Sbjct: 129 YINQKGR--------VIEIPRSLITR 146 >gi|319939748|ref|ZP_08014105.1| ribosome maturation factor rimP [Streptococcus anginosus 1_2_62CV] gi|319811086|gb|EFW07397.1| ribosome maturation factor rimP [Streptococcus anginosus 1_2_62CV] Length = 162 Score = 97.0 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 73/157 (46%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + V++PVI+E + V I + + +L IFV++ G +T+ D +L+ ISP+ Sbjct: 10 IVELVKEVVEPVIQE-PYELVNIDYGKMGSDHVLSIFVDKS-GGITVNDTADLTDIISPL 67 Query: 80 LD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LEV+SPG++RP+ K G + + + + G ++ Sbjct: 68 LDTIKPDPFPEQYFLEVTSPGLERPLKTKEQLADAVGQYIHVSLYQAVDKSKTFEGTLLS 127 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + K + + I + + ARL V Sbjct: 128 FEEDHLTMEYMDKTRKKV----VQIPYKLVSKARLAV 160 >gi|327462401|gb|EGF08726.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK1057] Length = 177 Score = 97.0 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 70/157 (44%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + VI+P I + V I + + +L +FV++ + +T+ D +L+ ISP+ Sbjct: 25 IVELVREVIEPAILA-PYELVDIEYGKMGGDYVLSVFVDKPE-GITVNDTADLTDIISPL 82 Query: 80 LDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LEV+SPG++RP+ K G + + + ++ G ++ Sbjct: 83 LDQIKPDPFPEQYFLEVTSPGLERPLKTKEQLADAVGSYIHVSLYKAVDKQKVFEGTLLS 142 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + ++ I + + ARL V Sbjct: 143 FEEEVLHMEYLDK----TRRKEVEIPYSLVSKARLAV 175 >gi|241895993|ref|ZP_04783289.1| hypothetical protein of function DUF150 [Weissella paramesenteroides ATCC 33313] gi|241870724|gb|EER74475.1| hypothetical protein of function DUF150 [Weissella paramesenteroides ATCC 33313] Length = 235 Score = 97.0 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 80/172 (46%), Gaps = 8/172 (4%) Query: 11 YEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDC 69 +E R+ + ++ ++++P++ + F + ++ + +L++ V+R DG + + D Sbjct: 2 HEGRVRM-AKVTENVQAILKPILAKKGFDLWDVLYEKQDSDFVLRVLVDRVDGEINMDDL 60 Query: 70 EELSQAISPILDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD 127 L++ IS LD+ + Y L+VSSPG DR + + +F+ G + + Sbjct: 61 VMLTEVISDELDMITPDPFPQAYLLDVSSPGADRELQQPGNFVWAVGKFIEVILNNPVAG 120 Query: 128 KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELL 179 +K G+++ + ++ + I I D++ A L V+ + + Sbjct: 121 LEKFTGQLVSFLDDKLTIDVALK----TKHQLIEIDLDNIQKANLSVSQDRI 168 >gi|290581069|ref|YP_003485461.1| hypothetical protein SmuNN2025_1543 [Streptococcus mutans NN2025] gi|254997968|dbj|BAH88569.1| hypothetical protein [Streptococcus mutans NN2025] Length = 163 Score = 97.0 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 68/166 (40%), Gaps = 11/166 (6%) Query: 15 IFGDMGLAGDISSVIQPVIEE---MSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCE 70 + + + +++PV+ F V I + N +L I V++ + +T+ D Sbjct: 1 MCKEGNTIATLVDIVRPVVAPVIPKPFELVDIEYEKLGGNYVLSILVDKPE-GITVEDTA 59 Query: 71 ELSQAISPILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 +L+ ISP+LD + Y LE+SSPG++RP+ + GH + + + Sbjct: 60 DLTDIISPLLDTIKPDPFPEQYMLEISSPGLERPLKTAQSLMNAVGHYINVSLYQAIDKV 119 Query: 129 QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + G + + + + + I + + ARL V Sbjct: 120 KVFEGDLTAFDGETLTMTYLDK----TQQKTVTIPYKMVAKARLAV 161 >gi|116627257|ref|YP_819876.1| hypothetical protein STER_0379 [Streptococcus thermophilus LMD-9] gi|122268140|sp|Q03M92|RIMP_STRTD RecName: Full=Ribosome maturation factor rimP gi|116100534|gb|ABJ65680.1| Uncharacterized protein conserved in bacteria [Streptococcus thermophilus LMD-9] gi|312277741|gb|ADQ62398.1| Ribosome maturation factor rimP [Streptococcus thermophilus ND03] Length = 157 Score = 96.6 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 70/161 (43%), Gaps = 9/161 (5%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQA 75 + +++V+ P I + + V I + + +L + +++ G +T+ D +L++ Sbjct: 1 MSQKIIDLVTAVVAPAIPD-PYELVDIEYEKIGSDYILSVLIDKP-GGITVEDTADLTEI 58 Query: 76 ISPILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 ISP+LD + Y LEVSSPG++RP+ K G + + + + G Sbjct: 59 ISPLLDTIQPDPFPDQYMLEVSSPGLERPLKTKEALKNAVGQYINVSLYKAIDKIKIFQG 118 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ ++ + + I + ++ ARL V Sbjct: 119 DLLAFDGETLTIDYLDK----TRHKTVEIPYQTVAKARLAV 155 >gi|228476573|ref|ZP_04061255.1| conserved hypothetical protein [Streptococcus salivarius SK126] gi|228251768|gb|EEK10833.1| conserved hypothetical protein [Streptococcus salivarius SK126] Length = 157 Score = 96.6 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 70/161 (43%), Gaps = 9/161 (5%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQA 75 + +++V+ P I E + V I + + +L + +++ G +T+ D +L++ Sbjct: 1 MSQKIIDLVTAVVAPAIPE-PYELVDIEYEKLGGDYVLSVLIDKP-GGITVEDTADLTEI 58 Query: 76 ISPILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 ISP+LD + Y LEVSSPG++RP+ K G + + + + G Sbjct: 59 ISPLLDTIQPDPFPDQYMLEVSSPGLERPLKTKEALTNAVGQYINVSLYKAIDKIKIFQG 118 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ ++ + + I + ++ ARL V Sbjct: 119 DLVAFDGETLTIDYLDK----TRHKTVEIPYQTVAKARLAV 155 >gi|119511040|ref|ZP_01630160.1| hypothetical protein N9414_09856 [Nodularia spumigena CCY9414] gi|119464291|gb|EAW45208.1| hypothetical protein N9414_09856 [Nodularia spumigena CCY9414] Length = 153 Score = 96.6 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 12/158 (7%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L I + PV E+ V I ++ +L++ + + L DCE +S+A+ Sbjct: 5 LVPQIIDLATPVAAELGLEVVGIVFHTNQRPPVLRVDIRNSQQDTGLNDCERMSRALEAS 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD II Y LEVSSPGI R ++ +F+ + G V +Q+ IG+++ Sbjct: 65 LDAAEIIPDAYVLEVSSPGISRQLITDREFISFKGFPVIISTSQPYDGQQEWIGQLIRRD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 ET +L ++ R I I + ++ DE Sbjct: 125 ETTVYLNQKGRI--------IEIPRTLITR---VLLDE 151 >gi|302335789|ref|YP_003800996.1| protein of unknown function DUF150 [Olsenella uli DSM 7084] gi|301319629|gb|ADK68116.1| protein of unknown function DUF150 [Olsenella uli DSM 7084] Length = 157 Score = 96.6 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 74/166 (44%), Gaps = 13/166 (7%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGN---MTLRDCEE 71 L + + ++ V + ++ K ++++ ++ D ++L + Sbjct: 1 MATTDLERQLVTALEDAARSHGIDVVDVEVVGSSKAPVVRVRIDHADEGVPTISLDEVAA 60 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 S I+ +LD + I G Y LEVSSPG+ RP+ ++ DF R+ G V+ + + +++ Sbjct: 61 QSGWINEVLDDADPIAGSYVLEVSSPGLARPLRKERDFERFAGSDVSLKTF-AREGRRRF 119 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 G+++G +E E +++++ D + S + + Sbjct: 120 TGRLLGVEGGRVVVEC--------GEERVSLALDDIKSCHVRPDFD 157 >gi|218247499|ref|YP_002372870.1| hypothetical protein PCC8801_2713 [Cyanothece sp. PCC 8801] gi|257061165|ref|YP_003139053.1| hypothetical protein Cyan8802_3390 [Cyanothece sp. PCC 8802] gi|226701501|sp|B7K5I1|RIMP_CYAP8 RecName: Full=Ribosome maturation factor rimP gi|218167977|gb|ACK66714.1| protein of unknown function DUF150 [Cyanothece sp. PCC 8801] gi|256591331|gb|ACV02218.1| protein of unknown function DUF150 [Cyanothece sp. PCC 8802] Length = 153 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 73/153 (47%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L I ++ P+ E+ V + ++ +L++ + G +L DCE +S+A+ + Sbjct: 5 LIPQIINLATPIAEDRGLEVVDVVFQTNKRPPVLRVDIRNSQGETSLDDCEAVSRALEAV 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD ++ G Y LE+SSPGI R + +F+ + G V + D ++ G++ G Sbjct: 65 LDESQVMGGSYVLEISSPGISRQLHSDREFISFKGFAVIVTTEIPYLDHKEWRGQLQGRD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 E+ ++ ++ R IAI + + +L Sbjct: 125 ESAVYINQKGRA--------IAIPRELIAKVQL 149 >gi|284052677|ref|ZP_06382887.1| hypothetical protein AplaP_14508 [Arthrospira platensis str. Paraca] gi|291568134|dbj|BAI90406.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 153 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 1/147 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQ-ISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L I + PV + + V + +K +L++ + + + +L DCE +S+A+ Sbjct: 5 LIPKIIDLATPVAKALGLEVVGAMFYTNQKPPVLRVDIRNLEQDTSLEDCERMSRALEEQ 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD ++I Y LEVSSPG+ R + DF+ + G V ++ GK++G Sbjct: 65 LDAVDVIPDAYILEVSSPGVSRSLSCDRDFISFKGFPVTVTTSEPYKGHKQQTGKLVGRD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDS 166 E + ++ R N L + + Sbjct: 125 EMAVHINQKGRQISIPNSLITQVLLEE 151 >gi|296111950|ref|YP_003622332.1| hypothetical protein LKI_09120 [Leuconostoc kimchii IMSNU 11154] gi|295833482|gb|ADG41363.1| hypothetical protein LKI_09120 [Leuconostoc kimchii IMSNU 11154] Length = 158 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 74/162 (45%), Gaps = 14/162 (8%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDG-NMTLRDCEELSQ 74 + I+ +I P++E+ +S E +L+I +++ + ++T+ D + +Q Sbjct: 1 MANKVEQKITVLITPIVEKRDKLLWDLSYTREGGQKVLRILLDKPNHESITMTDLTDFTQ 60 Query: 75 AISPILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWN--GHVVACEIVLSSGDKQK 130 ++ +LD + I Y L++SSPG DRP+++ F V + ++ ++K Sbjct: 61 EVNELLDTTDPDPIPEPYLLDISSPGADRPLIKPWHFKWAQESEEEVLISLFVAKNGQKK 120 Query: 131 LIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G I ++ G L E ++ ++FD + A L Sbjct: 121 WQGNISSLTDDGLVLATEAD--------ELVLNFDEIAKAVL 154 >gi|296129354|ref|YP_003636604.1| protein of unknown function DUF150 [Cellulomonas flavigena DSM 20109] gi|296021169|gb|ADG74405.1| protein of unknown function DUF150 [Cellulomonas flavigena DSM 20109] Length = 186 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 72/182 (39%), Gaps = 6/182 (3%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLL-QIFVERDDGN---MTLRDCEE 71 G A + V++ + + + + ++ V+ D + + L + Sbjct: 1 MGAPATAPRVREVVETAVTGAGLLLDGLEVAGSGRSTVVRVTVDLADDDPGTLDLDRVGD 60 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +++A+S LD +++ G Y LEV SPG +RP+ + R G V + +L Sbjct: 61 VTRAVSDALDAADVLPGAYTLEVGSPGAERPLTLARHWRRARGRTVLVRRTDGTTLTGRL 120 Query: 132 IGKIMGTSETGFFLEKEK--RGEKDMNELQIAISFDSLLSARLIVTDELLRASLNNYGSY 189 G G + + +G + + + +++D + AR+ V +R + G Sbjct: 121 DGVADGDAPELVVVPVTDPGKGRRPVVGAPVTLAWDDVRDARVQVDLAAVREADEEAGPQ 180 Query: 190 AG 191 G Sbjct: 181 DG 182 >gi|217077787|ref|YP_002335505.1| hypothetical protein THA_1728 [Thermosipho africanus TCF52B] gi|259645125|sp|B7IDT7|RIMP_THEAB RecName: Full=Ribosome maturation factor rimP gi|217037642|gb|ACJ76164.1| hypothetical protein THA_1728 [Thermosipho africanus TCF52B] Length = 148 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 68/155 (43%), Gaps = 13/155 (8%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 + + + + ++ + I + L+I ++ ++ +DCE +S+ + Sbjct: 2 KEIVSKVKEIAESACKKYNLELFDIKYYNKSGKWFLEIVIDNPLDYVSTKDCENISREVE 61 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD +II Y L VSSPG+DRP+ DF R+ + V ++ + +IG I Sbjct: 62 FQLDKLDIIPQRYYLTVSSPGLDRPLRSIDDFKRFINNKVKIKLEN-----ETIIGYIKD 116 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ FLE+ + K I ++ + A L Sbjct: 117 VKDSVIFLEENNKKIK-------EIKYNQIKKANL 144 >gi|288904584|ref|YP_003429805.1| hypothetical protein GALLO_0368 [Streptococcus gallolyticus UCN34] gi|306830579|ref|ZP_07463746.1| protein of hypothetical function DUF150 [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977558|ref|YP_004287274.1| hypothetical protein SGGBAA2069_c03580 [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288731309|emb|CBI12860.1| conserved hypothetical protein [Streptococcus gallolyticus UCN34] gi|304427297|gb|EFM30402.1| protein of hypothetical function DUF150 [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177486|emb|CBZ47530.1| conserved hypothetical protein [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 177 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 72/157 (45%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + ++ V+ P I+E F V + + + +L I +++ + +T+ D EL++ ISP+ Sbjct: 25 IINVVTEVVAPAIKE-PFELVDVEYEKMGSDYVLSILIDKPE-GITVDDTAELTEIISPL 82 Query: 80 LD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LEVSSPG++RP+ K + G V + + + G ++ Sbjct: 83 LDAIKPDPFPEQYMLEVSSPGLERPLKTKEALEKAVGSYVNVSLYKAIDKVKVFQGDLVA 142 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ + + + I + ++ ARL V Sbjct: 143 FDGDTLTIDYLDK----TRKKTVEIPYSTVAKARLAV 175 >gi|83816343|ref|YP_445896.1| hypothetical protein SRU_1779 [Salinibacter ruber DSM 13855] gi|83757737|gb|ABC45850.1| Uncharacterized BCR, YhbC family COG0779 [Salinibacter ruber DSM 13855] Length = 217 Score = 96.2 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 79/159 (49%), Gaps = 10/159 (6%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQA 75 LA +S + + VI + V + + K +++++++ ++ + D +S+ Sbjct: 66 TQQHLADRVSGLTEEVIVGTDYFLVDVEVRGHKGTRVVEVYIDSEEE-VGHDDLALISKE 124 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I +LDVE++++G Y+LE+SSPGI RP+ + + + G + S GD++ ++G + Sbjct: 125 IGFLLDVEDVVDGSYKLELSSPGIKRPLTMPAQYRKNVGRTLRVR-FESDGDEEIVVGDL 183 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + LE + ++ + + ++ AR+ + Sbjct: 184 TDADDEEIELELP-------SAERLQLPYTTITQARIEL 215 >gi|324992029|gb|EGC23951.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK405] gi|324994122|gb|EGC26036.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK678] gi|325697659|gb|EGD39544.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK160] gi|327490546|gb|EGF22327.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK1058] Length = 177 Score = 96.2 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 71/157 (45%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + VI+P I + V I + + +L +FV++ + +T+ D +L+ ISP+ Sbjct: 25 IVELVREVIEPAILP-PYELVDIEYGKMGGDYVLSVFVDKPE-GITVNDTADLTDIISPL 82 Query: 80 LDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LEV+SPG++RP+ K G + + + ++ G ++ Sbjct: 83 LDQIKPDPFPEQYFLEVTSPGLERPLKTKEQLADAVGSYIHVSLYKAVDKQKVFEGTLLS 142 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E +E + ++ I + + ARL V Sbjct: 143 FAEDVLHMEYLDK----TRRKEVEIPYSLVSKARLAV 175 >gi|322373935|ref|ZP_08048470.1| SP14.3 protein [Streptococcus sp. C150] gi|321277307|gb|EFX54377.1| SP14.3 protein [Streptococcus sp. C150] Length = 157 Score = 96.2 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 70/161 (43%), Gaps = 9/161 (5%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQA 75 + +++V+ P I E + V I + + +L + +++ G +T+ D +L++ Sbjct: 1 MSQKIVDLVTAVVAPAIPE-PYELVDIEYEKLGSDYVLSVLIDKP-GGITVEDTADLTEI 58 Query: 76 ISPILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 ISP+LD + Y LEVSSPG++RP+ K G + + + + G Sbjct: 59 ISPLLDTIQPDPFPDQYMLEVSSPGLERPLKTKEALTNAVGQYINVSLYKAIDKIKIFQG 118 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ ++ + + I + ++ ARL V Sbjct: 119 DLVAFDGETLTIDYLDK----TRHKTVEIPYQTVAKARLAV 155 >gi|332362936|gb|EGJ40725.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK49] Length = 149 Score = 96.2 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 9/153 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 + VI+P I + V I + + +L +FV++ + +T+ D +L+ ISP+LD Sbjct: 1 MREVIEPAILA-PYELVDIEYGKMGGDYVLSVFVDKPE-GITVNDTADLTDIISPLLDQI 58 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + Y LEV+SPG++RP+ K G + + + ++ G ++ E Sbjct: 59 KPDPFPEQYFLEVTSPGLERPLKTKEQLSNAVGSYIHVSLYKAVDKQKVFEGTLLSFEED 118 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + ++ I + + ARL V Sbjct: 119 VLHMEYLDK----TRRKEVEIPYSLVSKARLAV 147 >gi|315652149|ref|ZP_07905147.1| protein of hypothetical function DUF150 [Eubacterium saburreum DSM 3986] gi|315485641|gb|EFU76025.1| protein of hypothetical function DUF150 [Eubacterium saburreum DSM 3986] Length = 166 Score = 96.2 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 2/141 (1%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILD 81 ++ + E+ F V I ++E L+++ + DG + + DC E+S+ +S LD Sbjct: 21 KRTEEFLEKLSSELKFELVDIEFVKEAGEYYLRVYCDM-DGGIGIEDCAEISRHLSDWLD 79 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 E+ I+ Y LEVSSPG+ R + + DFLR G V ++ + + G + Sbjct: 80 EEDFIDEGYILEVSSPGLGRTLKKDKDFLRELGKEVELKLYKARDGVKDFEGVLKSFDGE 139 Query: 142 GFFLEKEKRGEKDMNELQIAI 162 +E E + E + I Sbjct: 140 NITVETEVKDEVFTKKEIANI 160 >gi|309804399|ref|ZP_07698473.1| conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] gi|308163514|gb|EFO65787.1| conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] Length = 144 Score = 96.2 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 65/143 (45%), Gaps = 7/143 (4%) Query: 32 VIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILD--VENIIEG 88 ++ V I ++E N L+I+V+R+ + + + LS+++S LD + + Sbjct: 1 LVHARGDELVDIEYVKENNQNYLRIYVDREPNGIDIDEIATLSESVSEQLDLINPDPLPD 60 Query: 89 HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKE 148 Y LE+SSPG++RP+ ++D+ + V + ++ G ++ LE Sbjct: 61 PYILELSSPGVERPIKTEADWCKAKNDYVHVGLYKKINGQKSYEGTLLDYDMDKIILEI- 119 Query: 149 KRGEKDMNELQIAISFDSLLSAR 171 + +IAI + + + R Sbjct: 120 ---KIKTQPKKIAIPRNMIANIR 139 >gi|239617902|ref|YP_002941224.1| protein of unknown function DUF150 [Kosmotoga olearia TBF 19.5.1] gi|239506733|gb|ACR80220.1| protein of unknown function DUF150 [Kosmotoga olearia TBF 19.5.1] Length = 167 Score = 96.2 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 72/153 (47%), Gaps = 7/153 (4%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 L + + + V EE+ + +++ + + +L + ++++DG +++ DCE S+A Sbjct: 17 LTEKLRKLAEEVAEELGYEIYKLTFGKGRRRAVLTVAIDKEDGYISISDCENFSRAFEKK 76 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD II Y L + SPG +R + + DF+R+ G V + ++ L+G+++ + Sbjct: 77 LDETEIISSSYNLVIESPGAERELRKPGDFMRFTGKSVKIVLKEPLENRSVLVGQLINAN 136 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 E + + + + + + A L Sbjct: 137 EDLVTIIEAD------SNRTFEVEYRMIKKANL 163 >gi|227904179|ref|ZP_04021984.1| protein of hypothetical function DUF150 [Lactobacillus acidophilus ATCC 4796] gi|227868198|gb|EEJ75619.1| protein of hypothetical function DUF150 [Lactobacillus acidophilus ATCC 4796] Length = 172 Score = 96.2 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 71/156 (45%), Gaps = 7/156 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAIS 77 + + V++ +I+E V + ++EK+ L+I+V+R+ + + + LS+ IS Sbjct: 16 SKVVNLVRPVVESIIDEHGDMLVNMEYIKEKSQNYLRIYVDREPNGIDIDEIAVLSELIS 75 Query: 78 PILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + + Y LE+SSPG +RP+ K+D+ + + + DK+ G + Sbjct: 76 EKLDTLDPDPLPDPYVLELSSPGAERPIKTKADWEKALNDYIHVGLYQKIEDKKMYEGTL 135 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 ++ LE + + + + + + R Sbjct: 136 KSYNDDEIILEVKDK----TRRKTLTVPRKLIANIR 167 >gi|256843342|ref|ZP_05548830.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN] gi|256849839|ref|ZP_05555270.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US] gi|262046915|ref|ZP_06019875.1| conserved hypothetical protein [Lactobacillus crispatus MV-3A-US] gi|293381213|ref|ZP_06627221.1| SP14.3 family protein [Lactobacillus crispatus 214-1] gi|295693138|ref|YP_003601748.1| hypothetical protein LCRIS_01276 [Lactobacillus crispatus ST1] gi|312978243|ref|ZP_07789987.1| SP14.3 protein [Lactobacillus crispatus CTV-05] gi|256614762|gb|EEU19963.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN] gi|256713328|gb|EEU28318.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US] gi|260572897|gb|EEX29457.1| conserved hypothetical protein [Lactobacillus crispatus MV-3A-US] gi|290922253|gb|EFD99247.1| SP14.3 family protein [Lactobacillus crispatus 214-1] gi|295031244|emb|CBL50723.1| UPF0090 protein [Lactobacillus crispatus ST1] gi|310894961|gb|EFQ44031.1| SP14.3 protein [Lactobacillus crispatus CTV-05] Length = 158 Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 69/156 (44%), Gaps = 7/156 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAIS 77 + + V++ +I+E V + ++EK L+I+V+R + + + LS+ +S Sbjct: 2 SKVIDSVRPVVETIIDEHGDMLVDMEYVKEKGQNYLRIYVDRQPNGIDIDEIAALSELVS 61 Query: 78 PILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + + Y LE+SSPG +RP+ K+D+ + + + +K+ G + Sbjct: 62 EKLDALDPDPLPDPYVLELSSPGAERPIKTKADWEKALNDYIHVGLYQKIENKKMYEGTL 121 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 ++ LE + + + + + + R Sbjct: 122 KSYNDDEVVLEIKDK----TRRKTLTVPRKLIANIR 153 >gi|210622609|ref|ZP_03293269.1| hypothetical protein CLOHIR_01217 [Clostridium hiranonis DSM 13275] gi|210154110|gb|EEA85116.1| hypothetical protein CLOHIR_01217 [Clostridium hiranonis DSM 13275] Length = 154 Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 78/148 (52%), Gaps = 2/148 (1%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQ 74 + + ++ + +E + +V + ++E L++ V++ +G ++L +CEE+S+ Sbjct: 1 MKKSEIVDRVEKMVTAITDEKGYETVDVEYVKEAGQFYLRVVVDK-EGGISLNECEEVSR 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 +SP LD + IE +Y LEVSSPGIDR + R +F+++ G V ++ + ++ G+ Sbjct: 60 ELSPKLDENDFIEENYYLEVSSPGIDRALKRDKEFVKYKGRDVEIKLYKAIDGVKQFEGE 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAI 162 ++G E + E N +AI Sbjct: 120 LVGLDEENNIVVIINNEEMKFNRKDVAI 147 >gi|302874659|ref|YP_003843292.1| hypothetical protein Clocel_1784 [Clostridium cellulovorans 743B] gi|307690727|ref|ZP_07633173.1| hypothetical protein Ccel74_21406 [Clostridium cellulovorans 743B] gi|302577516|gb|ADL51528.1| protein of unknown function DUF150 [Clostridium cellulovorans 743B] Length = 153 Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 2/143 (1%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 L +I S + VI+++ + I +E L+ ++E + + L DCE++S+ Sbjct: 1 MDKEKLLIEIESRMGSVIKDLGYDLYHIEYVVEGGENFLRFYIEN-EAGIGLNDCEKVSR 59 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 AIS I+DVE+ I+ +Y LEVSSPG+ R + + F R+ G V ++ ++K Sbjct: 60 AISDIIDVEDPIDENYYLEVSSPGVFRTLFKDEHFKRYIGEEVTVKLKSLLNGRKKFDAV 119 Query: 135 IMGTSETGFFLEKEKRGEKDMNE 157 + + +++ + Sbjct: 120 LDNIDDENIYVKANNEVITVPKK 142 >gi|222153584|ref|YP_002562761.1| hypothetical protein SUB1470 [Streptococcus uberis 0140J] gi|259645120|sp|B9DVC1|RIMP_STRU0 RecName: Full=Ribosome maturation factor rimP gi|222114397|emb|CAR43160.1| conserved hypothetical protein [Streptococcus uberis 0140J] Length = 158 Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 70/162 (43%), Gaps = 9/162 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + + + PVIE + V + + + +L +FV++ +G +++ D L++ Sbjct: 1 MANQTIIDTVMKTVSPVIEP-PYELVDVEYEKMGSDYILSVFVDK-EGGISVEDTVTLTE 58 Query: 75 AISPILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 ISP+LD + Y LEVSSPG++RP+ + G V + + + Sbjct: 59 LISPLLDAIHPDPFPEQYMLEVSSPGLERPLKTPEALTKAIGSYVNVSLYKAIDKVKVFQ 118 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G ++ + + + + I + ++ ARL V Sbjct: 119 GDLVAFDGDTLTIHYLDK----TRQKTVEIPYQTVAKARLAV 156 >gi|329769655|ref|ZP_08261059.1| hypothetical protein HMPREF0433_00823 [Gemella sanguinis M325] gi|328838410|gb|EGF88019.1| hypothetical protein HMPREF0433_00823 [Gemella sanguinis M325] Length = 154 Score = 95.8 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 73/157 (46%), Gaps = 6/157 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQAIS 77 M + + S+ +++ ++ + ++E + L+++ ++ DG ++L DC LS+ ++ Sbjct: 1 MSIVQKVKSIATEQVKDSNYSLYDVEYVKEGSDYFLRVYFDK-DGGLSLDDCVLLSERLA 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD E+ I Y LEVSSPGI+R + + G V + ++++ G I+ Sbjct: 60 EELDKEDFISDKYYLEVSSPGIERDLRDLEEVSNSVGKHVYIKTYEKIDNQKEFYGDIIS 119 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + + + + ++ + RL V Sbjct: 120 VDGDEITIEYKDKARVKKS----VVKYEKIAKIRLAV 152 >gi|241889857|ref|ZP_04777155.1| conserved hypothetical protein [Gemella haemolysans ATCC 10379] gi|241863479|gb|EER67863.1| conserved hypothetical protein [Gemella haemolysans ATCC 10379] Length = 154 Score = 95.8 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 69/157 (43%), Gaps = 6/157 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQAIS 77 M + + ++ E F + ++E L+I+ ++ DG +TL DC LS+ ++ Sbjct: 1 MSIVEKVKAIATKQAENTEFSLYDVEYVKEGTEYFLRIYFDK-DGGLTLDDCVLLSEKLA 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD E+ I Y LEVSSPGI+R + + G V + ++++ G I+ Sbjct: 60 EELDKEDFISDKYYLEVSSPGIERDLRDLEEVTNSVGKHVYIKTYEKIDNQKEFYGDILA 119 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + + + I++ + RL V Sbjct: 120 VEGEEITVEYKDKARVKKS----TINYSKIAKIRLAV 152 >gi|329115931|ref|ZP_08244648.1| hypothetical protein SPB_1207 [Streptococcus parauberis NCFD 2020] gi|326906336|gb|EGE53250.1| hypothetical protein SPB_1207 [Streptococcus parauberis NCFD 2020] Length = 160 Score = 95.8 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 67/162 (41%), Gaps = 9/162 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ + P I F V + + + +L I +++ DG +T+ D L++ Sbjct: 3 IANQSIIETVTEAVAPKILA-PFELVDVEYEKMGNDYVLSILIDK-DGGITVEDTTALTE 60 Query: 75 AISPILDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 ISP+LD + Y LEVSSPG++RP+ G + + + + Sbjct: 61 IISPVLDQITPDPFPEQYMLEVSSPGLERPLKTAESITNAVGSYINVSLYKAIDKIKVFQ 120 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G ++ + + + + I + S+ ARL V Sbjct: 121 GDLVAFDGQTLTINY----LEKNRQKTVEIPYQSVAKARLAV 158 >gi|24378910|ref|NP_720865.1| hypothetical protein SMU.417 [Streptococcus mutans UA159] gi|34222873|sp|Q8DVQ3|RIMP_STRMU RecName: Full=Ribosome maturation factor rimP gi|24376793|gb|AAN58171.1|AE014888_9 conserved hypothetical protein [Streptococcus mutans UA159] Length = 163 Score = 95.8 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 68/166 (40%), Gaps = 11/166 (6%) Query: 15 IFGDMGLAGDISSVIQPVIEE---MSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCE 70 + + + +++PV+ F V I + N +L I V++ + +T+ D Sbjct: 1 MCKEGNTIATLVDIVRPVVAPVIPKPFELVDIEYEKLGGNYVLSILVDKPE-GITVEDTA 59 Query: 71 ELSQAISPILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 +L+ ISP+LD + Y LE+SSPG++RP+ + GH + + + Sbjct: 60 DLTDIISPLLDTIKPDPFPEQYMLEISSPGLERPLKTAQSLMNAVGHYINVSLYQAIDKV 119 Query: 129 QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + G + + + + + I + + ARL V Sbjct: 120 KVFEGDLTAFDGETLKMTYLDK----TQQKTVTIPYKMVAKARLAV 161 >gi|300866112|ref|ZP_07110840.1| Ribosome maturation factor rimP [Oscillatoria sp. PCC 6506] gi|300335908|emb|CBN55998.1| Ribosome maturation factor rimP [Oscillatoria sp. PCC 6506] Length = 153 Score = 95.8 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 69/153 (45%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQ-ISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L I + P+ E + V + + +L++ + + L DCE +S+A+ Sbjct: 5 LIPQIIDLATPLAETLGLEVVGAVFHTNQNPPILRVDIRNPQQDTGLEDCERMSKALEEK 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD+ +I+ Y LE+SSPG+ R + +F+ + G V + + ++ +G+++ Sbjct: 65 LDMADILPDAYVLEISSPGLSRSLASDREFISFKGFPVIVKTSEAYNGLKEWVGQLIRRD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 E ++ ++ R IAI + +L Sbjct: 125 EKAVYINQKGR--------PIAIPRSLITQVQL 149 >gi|312862565|ref|ZP_07722807.1| conserved hypothetical protein [Streptococcus vestibularis F0396] gi|322517415|ref|ZP_08070288.1| protein of hypothetical function DUF150 [Streptococcus vestibularis ATCC 49124] gi|311101970|gb|EFQ60171.1| conserved hypothetical protein [Streptococcus vestibularis F0396] gi|322123897|gb|EFX95456.1| protein of hypothetical function DUF150 [Streptococcus vestibularis ATCC 49124] Length = 157 Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 70/161 (43%), Gaps = 9/161 (5%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQA 75 + +++V+ P I E + V I + + +L + +++ G +T+ D +L++ Sbjct: 1 MSQKIIDLVTAVVAPAIPE-PYELVDIEYEKIGSDYILSVLIDKP-GGITVEDTADLTEI 58 Query: 76 ISPILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 ISP+LD + Y LEVSSPG++RP+ K G + + + + G Sbjct: 59 ISPLLDTIQPDPFPDQYMLEVSSPGLERPLKTKEALKNAVGQYINVSLYKAIDKIKIFQG 118 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ ++ + + I + ++ ARL V Sbjct: 119 DLLTFDGETLTIDYLDK----TRHKTVEIPYQTVAKARLAV 155 >gi|299139240|ref|ZP_07032416.1| protein of unknown function DUF150 [Acidobacterium sp. MP5ACTX8] gi|298598920|gb|EFI55082.1| protein of unknown function DUF150 [Acidobacterium sp. MP5ACTX8] Length = 193 Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 74/185 (40%), Gaps = 34/185 (18%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDD-------------------- 61 I + + S V + K+ L++F+E+D Sbjct: 6 ETIRATADRIAASHSLEVVDLEFTGGSKHRTLRVFLEKDAAARAKFTAEAASNEEAGLPK 65 Query: 62 -------GNMTLRDCEELSQAISPILDVENIIEG-HYRLEVSSPGIDRPMVRKSDFLRWN 113 +T DC ++ +LDVE++I G Y LE SSPG++R +++ +D+ R+ Sbjct: 66 GVPVETLSGVTHEDCANFARDFGTVLDVEDLIPGAEYTLETSSPGLERKLLKAADYERFK 125 Query: 114 GHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK-----EKRGEKDMNELQIAISFDSLL 168 G +V + + G+++ T L+ + + +K + + IS ++ Sbjct: 126 GSLVKVQTFSPVDSNRHFTGRLVAFEGTNLTLDLAAVKQKGKAKKTLTAQTVEISLANVE 185 Query: 169 SARLI 173 A L+ Sbjct: 186 KANLV 190 >gi|312875705|ref|ZP_07735702.1| conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] gi|311088770|gb|EFQ47217.1| conserved hypothetical protein [Lactobacillus iners LEAF 2053A-b] Length = 144 Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 66/143 (46%), Gaps = 7/143 (4%) Query: 32 VIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILD--VENIIEG 88 ++ V I ++E N L+I+V+R+ + + + LS+++S LD + + Sbjct: 1 LVHARGDELVDIEYVKENNQNYLRIYVDREPNGIDIDEIATLSESVSEQLDLINPDPLPD 60 Query: 89 HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKE 148 Y LE+SSPG++RP+ ++D+ + V + ++ G ++ LE Sbjct: 61 PYILELSSPGVERPIKTEADWCKAKNDYVHVGLYKKINGQKSYEGTLLDYDMDKIILEI- 119 Query: 149 KRGEKDMNELQIAISFDSLLSAR 171 + + +IAI + + + R Sbjct: 120 ---KIKTQQQKIAIPRNMIANIR 139 >gi|160898429|ref|YP_001564011.1| hypothetical protein Daci_2988 [Delftia acidovorans SPH-1] gi|226703492|sp|A9C1Z0|RIMP_DELAS RecName: Full=Ribosome maturation factor rimP gi|160364013|gb|ABX35626.1| protein of unknown function DUF150 [Delftia acidovorans SPH-1] Length = 192 Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 74/182 (40%), Gaps = 36/182 (19%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD------------DGNMTLRDCEEL 72 + +++ + + + V+I LL++ ++ + +T+ DCE++ Sbjct: 3 LQQIVEQTVTGLGYDLVEIERSAGG--LLRVTIDLPWQPPVEGGPVVPEQFVTVEDCEKI 60 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG------ 126 ++ + L+V+ + RLEVSSPGIDRP+ + DF R+ G V+ + G Sbjct: 61 TRQLQFALEVD--GADYTRLEVSSPGIDRPLRHEQDFTRFVGEVIDLTLKEPIGAAAEGQ 118 Query: 127 ---DKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQ-----------IAISFDSLLSARL 172 +++K G + + G+ + + + + + L ARL Sbjct: 119 VSANRKKFRGTLERAEDGGWQIVWSDEPPVKPGQKVSKKRVPAPLQALGFTLEELREARL 178 Query: 173 IV 174 Sbjct: 179 AP 180 >gi|158334114|ref|YP_001515286.1| hypothetical protein AM1_0930 [Acaryochloris marina MBIC11017] gi|259585654|sp|B0BZP6|RIMP_ACAM1 RecName: Full=Ribosome maturation factor rimP gi|158304355|gb|ABW25972.1| conserved hypothetical protein [Acaryochloris marina MBIC11017] Length = 150 Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 65/150 (43%), Gaps = 9/150 (6%) Query: 24 DISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 + + PV + + V + +L++ + D + L DCE++S+A+ +LD Sbjct: 4 KVIDLAAPVAAQFNLEVVGAVFQTNQSPPVLRVDIRNCDADTGLEDCEKMSRALEAVLDE 63 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 +++ Y LE+SSPG+ + DF+ + G V + + IG + G E Sbjct: 64 DDVFPEAYVLEISSPGLSTLLTCDRDFVSFRGFPVLVQTHQPYRGHHQWIGNLTGRDEKF 123 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARL 172 L ++ R I I + +L +L Sbjct: 124 VQLNQKGR--------PIKIPREEILQVQL 145 >gi|113477416|ref|YP_723477.1| hypothetical protein Tery_3979 [Trichodesmium erythraeum IMS101] gi|110168464|gb|ABG53004.1| protein of unknown function DUF150 [Trichodesmium erythraeum IMS101] Length = 172 Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 37/159 (23%), Positives = 64/159 (40%), Gaps = 9/159 (5%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQ-ISLLEEKNLLLQIFVERDDGNMTLRDCEELS 73 L I P+ + + V + + +L++ + + L DCE +S Sbjct: 18 FVMSHPLVPQIIKFATPIAKSLGLELVGAVFHTNQHPPILRLDIRHPHQDTGLDDCERMS 77 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 AI LD NII Y LE+SSPGI + + DF+ + G VA K IG Sbjct: 78 NAIGEQLDAANIIPEPYLLEISSPGISKFLDNDRDFIAFKGFNVAVNTSEPYKGKNYWIG 137 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +++ +T ++ ++ R +I + + L Sbjct: 138 QLVSRDQTAVYINQKGRQA--------SIPRSLINTVEL 168 >gi|325686966|gb|EGD28990.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK72] Length = 177 Score = 95.1 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 71/157 (45%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + VI+P I + V I + + +L +FV++ + +T+ D +L+ ISP+ Sbjct: 25 IVELVREVIEPAILA-PYELVDIEYGKMGGDYVLSVFVDKPE-GITVNDTADLTDIISPL 82 Query: 80 LDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LEV+SPG++RP+ K G + + + ++ G ++ Sbjct: 83 LDQIKPDPFPEQYFLEVTSPGLERPLKTKEQLADAVGSYIHVSLYKAVDKQKVFEGTLLS 142 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E LE + ++ I++ + ARL V Sbjct: 143 FEEDVLHLEYLDK----TRRKEVEITYSLVSKARLAV 175 >gi|315502522|ref|YP_004081409.1| hypothetical protein ML5_1726 [Micromonospora sp. L5] gi|315409141|gb|ADU07258.1| protein of unknown function DUF150 [Micromonospora sp. L5] Length = 216 Score = 95.1 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 69/155 (44%), Gaps = 10/155 (6%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + VI+PV+ + +S+ + + DG + L ++S+A+S LD Sbjct: 42 RLREVIEPVVTAAGYDLEDLSVSRAGRRHVVRVIVDADGGINLDGVADVSRAVSAALDAA 101 Query: 84 -----NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +I+ G Y+LEVSSPG+DRP+ + R G +V + ++L G+I Sbjct: 102 EEAGGDIVAGEYQLEVSSPGVDRPLTLPRHWRRNAGRLVKVTVR-GDAGDRQLTGRITAA 160 Query: 139 SETGFFLEKE----KRGEKDMNELQIAISFDSLLS 169 + LE + + ++ ++ + F+ L Sbjct: 161 DDERVVLETDAGPAEHPYAELGPGRVQVEFNRLDD 195 >gi|302865965|ref|YP_003834602.1| hypothetical protein Micau_1466 [Micromonospora aurantiaca ATCC 27029] gi|302568824|gb|ADL45026.1| protein of unknown function DUF150 [Micromonospora aurantiaca ATCC 27029] Length = 216 Score = 95.1 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 69/155 (44%), Gaps = 10/155 (6%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + VI+PV+ + +S+ + + DG + L ++S+A+S LD Sbjct: 42 RLREVIEPVVTAAGYDLEDLSVSRAGRRHVVRVIVDADGGINLDGVADVSRAVSAALDAA 101 Query: 84 -----NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +I+ G Y+LEVSSPG+DRP+ + R G +V + ++L G+I Sbjct: 102 EEAGGDIVAGEYQLEVSSPGVDRPLTLPRHWRRNAGRLVKVTVR-GDAGDRQLTGRITAA 160 Query: 139 SETGFFLEKE----KRGEKDMNELQIAISFDSLLS 169 + LE + + ++ ++ + F+ L Sbjct: 161 DDERVVLETDAGPAEHPYAELGPGRVQVEFNRLDD 195 >gi|209527730|ref|ZP_03276226.1| protein of unknown function DUF150 [Arthrospira maxima CS-328] gi|209491851|gb|EDZ92210.1| protein of unknown function DUF150 [Arthrospira maxima CS-328] Length = 153 Score = 95.1 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 1/147 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQ-ISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L I + PV + + V + +K +L++ + + + +L DCE +S+A+ Sbjct: 5 LIPKIIDLATPVAKPLGLEVVGAMFYTNQKPPVLRVDIRNLEQDTSLEDCERMSRALEEQ 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD ++I Y LEVSSPG+ R + DF+ + G V ++ GK++G Sbjct: 65 LDAVDVIPDAYILEVSSPGVSRSLSCDRDFISFKGFPVTVTTSEPYKGHKQQSGKLVGRD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDS 166 E + ++ R N L + + Sbjct: 125 EMAVHINQKGRQISIPNSLITEVLLEE 151 >gi|170017454|ref|YP_001728373.1| YlxS [Leuconostoc citreum KM20] gi|259585783|sp|B1MZH7|RIMP_LEUCK RecName: Full=Ribosome maturation factor rimP gi|169804311|gb|ACA82929.1| YlxS [Leuconostoc citreum KM20] Length = 158 Score = 95.1 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 74/162 (45%), Gaps = 14/162 (8%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGN-MTLRDCEELSQ 74 +A +IS++I+P+I +S +E +L+I +++ + +T+ D +Q Sbjct: 1 MANKVAQEISTLIEPLINAQQLLLWDVSYTKEGGQKVLRILIDKRNHEFITMDDITTFTQ 60 Query: 75 AISPILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWN--GHVVACEIVLSSGDKQK 130 A++ +LD + I Y L++SSPG DRP++R + G + ++ ++K Sbjct: 61 AVNELLDTIEPDPIPEAYMLDISSPGADRPLIRPWHYEWAKASGENILVAFFVAKNGQKK 120 Query: 131 LIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 GKI + G L + I +FD + A L Sbjct: 121 WQGKIETIDDKGITLT--------TSSETIVCTFDEIAKAVL 154 >gi|329767073|ref|ZP_08258601.1| hypothetical protein HMPREF0428_00298 [Gemella haemolysans M341] gi|328837798|gb|EGF87423.1| hypothetical protein HMPREF0428_00298 [Gemella haemolysans M341] Length = 154 Score = 94.7 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 69/157 (43%), Gaps = 6/157 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQAIS 77 M + + ++ E F + ++E L+I+ ++ DG ++L DC LS+ ++ Sbjct: 1 MSIVEKVKTIATKQTENTEFSLYDVEYVKEGTEYFLRIYFDK-DGGLSLDDCVLLSEKLA 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD E+ I Y LEVSSPGI+R + + G V + ++++ G I+ Sbjct: 60 EELDKEDFISDKYYLEVSSPGIERDLRNLEEVTNSVGKHVYIKTYEKIDNQKEFYGDILA 119 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + + + I++ + RL V Sbjct: 120 VEGEEITVEYKDKARVKKS----TINYSKIAKIRLAV 152 >gi|157803621|ref|YP_001492170.1| hypothetical protein A1E_02200 [Rickettsia canadensis str. McKiel] gi|166987409|sp|A8EYF2|RIMP_RICCK RecName: Full=Ribosome maturation factor rimP gi|157784884|gb|ABV73385.1| hypothetical protein A1E_02200 [Rickettsia canadensis str. McKiel] Length = 125 Score = 94.7 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 66/121 (54%), Gaps = 1/121 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-MTLRDCEELSQAISPI 79 + I++VI+ + +M F V + + +++I ++ + +++ DC ++S+ I I Sbjct: 4 IEQQITNVIEESLIDMGFELVLVKFKGVNSKVVEILIDSLNSEKVSVEDCTKVSRTIPAI 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVEN+IE LEV+S G++RP+V+ ++ R+ G V + DK GKI+ Sbjct: 64 LDVENLIEDASSLEVASSGLERPLVKFENYNRFLGREVKITLKELLNDKTSYQGKIIKAE 123 Query: 140 E 140 Sbjct: 124 N 124 >gi|187251075|ref|YP_001875557.1| hypothetical protein Emin_0665 [Elusimicrobium minutum Pei191] gi|259585767|sp|B2KC93|RIMP_ELUMP RecName: Full=Ribosome maturation factor rimP gi|186971235|gb|ACC98220.1| Uncharacterized protein conserved in bacteria [Elusimicrobium minutum Pei191] Length = 152 Score = 94.3 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 10/149 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLL-QIFVERDDGNMTLRDCEELSQAISPILDVE 83 I SV+ + + V + + + + L Q FV++ +G + L D E+ S+ I I+++E Sbjct: 7 IESVVADGLANQGYEVVDLIVQNQGSKKLFQFFVDK-EGGINLDDVEKASRLIDSIIEME 65 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 N+IEG Y LE SSPGI R + + F ++ G + ++ G I G +ET Sbjct: 66 NLIEGAYILEASSPGIKRVLKKPEHFKKFIGQRAKITLKQMIENRANFTGLIAGANETEM 125 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 L+ Q ++ + A L Sbjct: 126 TLDD--------GTTQFKFKYEDIKKANL 146 >gi|291287255|ref|YP_003504071.1| hypothetical protein Dacet_1343 [Denitrovibrio acetiphilus DSM 12809] gi|290884415|gb|ADD68115.1| protein of unknown function DUF150 [Denitrovibrio acetiphilus DSM 12809] Length = 169 Score = 94.3 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 11/147 (7%) Query: 32 VIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE--G 88 V+ E ++L E +L+I +++ + + DC E S+AIS LD E+ I Sbjct: 28 VLSEKGLELFDMTLRSERGGKVLRITIDK-ETGPGIEDCTEASRAISAFLDGEDNIVPLD 86 Query: 89 HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG-DKQKLIGKIMGTSETGFFLEK 147 Y LEVS+PG++RP+ + DF+R G V ++ GKI ++ L Sbjct: 87 KYHLEVSTPGLERPLRSQQDFVRQTGKKCKIITVNKDESGRKSYTGKIDSVDDSKVTLYV 146 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 EK IS D++ A L+V Sbjct: 147 EKESAA------FEISLDNISKANLVV 167 >gi|269123543|ref|YP_003306120.1| hypothetical protein Smon_0773 [Streptobacillus moniliformis DSM 12112] gi|268314869|gb|ACZ01243.1| protein of unknown function DUF150 [Streptobacillus moniliformis DSM 12112] Length = 164 Score = 94.3 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 80/166 (48%), Gaps = 12/166 (7%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 I IQP + E S I + E L+I+VE +GN +L DC LS I I V Sbjct: 7 KIEKEIQPYLNENSLELADIEYVREGGYNFLRIYVESKNGNTSLDDCVMLSTKIDNI--V 64 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 + +I+ + LEVS+PG++R + ++ DF+R+ G ++ + + +K+ G ++G Sbjct: 65 DELIDDKFYLEVSTPGLERKLKKEKDFIRFTGKKISVKTKSNVENKKSFEGILLGFENGK 124 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLIVT--DELLRASLNNY 186 ++ + + I + + A+L+ D++ + + N Sbjct: 125 ILIKDD-------IIENVEIPLEKIKVAKLVFNLSDKIFKEDVENE 163 >gi|332528892|ref|ZP_08404862.1| hypothetical protein HGR_03237 [Hylemonella gracilis ATCC 19624] gi|332041649|gb|EGI78005.1| hypothetical protein HGR_03237 [Hylemonella gracilis ATCC 19624] Length = 202 Score = 94.3 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 76/190 (40%), Gaps = 37/190 (19%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD------DGNMTLRDCEE 71 + + + + + + + V+I LL+I ++ + + + DCE+ Sbjct: 5 KDKIKLTLQEIAEQTVTGLGYELVEIERSAGG--LLRITIDLPWTPGLHEQFVNVEDCEK 62 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG----- 126 +++ + +L+VE I + RLEVSSPGIDRP+ + DF R+ G V+ + G Sbjct: 63 VTRQLQYVLEVEGI--EYKRLEVSSPGIDRPLRHEQDFERFAGQVIDVTLKAPIGAAALA 120 Query: 127 -----------DKQKLIGKIMGTSETGFFLEKEK-----------RGEKDMNELQIAISF 164 +++K G + + G+ + + + + + Sbjct: 121 GQDAAGGKVAANRKKFRGTLEKAPQGGWQIVWSDEPAPKPGQRVSKKREPAPLQALGFTL 180 Query: 165 DSLLSARLIV 174 D L ARL Sbjct: 181 DELRDARLAP 190 >gi|259645132|sp|Q10XM0|RIMP_TRIEI RecName: Full=Ribosome maturation factor rimP Length = 153 Score = 94.3 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQ-ISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L I P+ + + V + + +L++ + + L DCE +S AI Sbjct: 5 LVPQIIKFATPIAKSLGLELVGAVFHTNQHPPILRLDIRHPHQDTGLDDCERMSNAIGEQ 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD NII Y LE+SSPGI + + DF+ + G VA K IG+++ Sbjct: 65 LDAANIIPEPYLLEISSPGISKFLDNDRDFIAFKGFNVAVNTSEPYKGKNYWIGQLVSRD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +T ++ ++ R +I + + L Sbjct: 125 QTAVYINQKGRQA--------SIPRSLINTVEL 149 >gi|291546818|emb|CBL19926.1| Uncharacterized protein conserved in bacteria [Ruminococcus sp. SR1/5] Length = 120 Score = 94.3 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 58/110 (52%), Gaps = 2/110 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPIL 80 +++ P++E F V + ++E L+ ++++ G +T+ DCE++S+A S IL Sbjct: 8 EQKTEAILTPIVESRGFELVDVEYVKEAGTWYLRGYIDKP-GGITVNDCEDVSRAFSDIL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 D ++ IE Y +E+SSPG+DRP+ ++ S +++ Sbjct: 67 DEQDFIEDSYIMEISSPGLDRPLKKEKTLREALASWWRSVPTGPSRNRKN 116 >gi|15604409|ref|NP_220926.1| hypothetical protein RP554 [Rickettsia prowazekii str. Madrid E] gi|6647940|sp|Q9ZCZ6|RIMP_RICPR RecName: Full=Ribosome maturation factor rimP gi|3861103|emb|CAA15003.1| unknown [Rickettsia prowazekii] Length = 117 Score = 94.3 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 62/109 (56%), Gaps = 1/109 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDD-GNMTLRDCEELSQAISPI 79 +A I+++I+ + +M F V + ++++ ++ + +++ DC +S+ IS I Sbjct: 4 IAQQITNIIEESLTDMGFELVLVKFKGVSPKVVEVLIDSLNGNKISIEDCTNVSRTISAI 63 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 LDVE++IE Y LEVSS GI+R +V+ ++ R+ G V ++ K Sbjct: 64 LDVEDLIEEAYSLEVSSSGIERTLVKFENYNRFLGREVKIKLKELLNGK 112 >gi|331002484|ref|ZP_08326002.1| hypothetical protein HMPREF0491_00864 [Lachnospiraceae oral taxon 107 str. F0167] gi|330410300|gb|EGG89734.1| hypothetical protein HMPREF0491_00864 [Lachnospiraceae oral taxon 107 str. F0167] Length = 154 Score = 93.9 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 63/141 (44%), Gaps = 2/141 (1%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILD 81 ++ + E+ F V + ++E L+ + ++ G + + DC ++S+ +S LD Sbjct: 9 KRTEEFLEKLSSELDFEVVDVEFVKEAGEHYLRAYCDK-TGGIGIEDCADISRHLSDWLD 67 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + I+ Y LEVSSPG+ R + + DFLR G V ++ + + G + Sbjct: 68 ENDFIDEGYILEVSSPGLGRTLKKDKDFLRELGKEVELKLYKAREGVKDFEGVLKSFDGD 127 Query: 142 GFFLEKEKRGEKDMNELQIAI 162 +E E + E + I Sbjct: 128 NITVEIENKDEVFTKKEIANI 148 >gi|315104206|gb|EFT76182.1| conserved hypothetical protein [Propionibacterium acnes HL050PA2] Length = 245 Score = 93.9 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 70/176 (39%), Gaps = 13/176 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVER---DDGNMTLRDCEELSQAIS 77 A ++ +++PV+ ++ ++ ++ + L+++ ++ D +L + E + IS Sbjct: 70 AERLTRLLEPVVSQVGLELDRVDVVPAGRRRLVRVTIDGDGPDGHGPSLDEISEATAEIS 129 Query: 78 PILDVENIIEGH-YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ---KLIG 133 LD + Y LEVSS G+ P+ + + R GH+V + + ++ G Sbjct: 130 HCLDDSGAMGESPYTLEVSSRGVSTPLTQPRHYRRNIGHLVRFTL-NPAEGQKSGETFDG 188 Query: 134 KIMGTSETGFFLEKEKRGEKDMNE--LQIAISFDSLLSARLIVTDELLRASLNNYG 187 +I E LE E K + + A +V EL R Sbjct: 189 RIAEAGEEVVTLEVEAENSKPHKPVYTTREVQLADVAKA--VVQVELNRRDAQASK 242 >gi|17231320|ref|NP_487868.1| hypothetical protein alr3828 [Nostoc sp. PCC 7120] gi|34222944|sp|Q8YQJ5|RIMP_ANASP RecName: Full=Ribosome maturation factor rimP gi|17132962|dbj|BAB75527.1| alr3828 [Nostoc sp. PCC 7120] Length = 153 Score = 93.9 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 9/146 (6%) Query: 25 ISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I+ + PV E++ V I ++ +L+I + + L DCE +S+A+ LD Sbjct: 9 ITDLAIPVAEQLGLEVVGIVFHTNQRPPVLRIDIRNPQQDTGLDDCERMSRALEAALDAT 68 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 II Y LEVSSPGI R +V +F+ + G V ++Q+ IG+++ ET Sbjct: 69 EIIPDAYVLEVSSPGISRQLVTDREFISFKGFPVIVSTSPPHEEQQEWIGQLIRRDETKV 128 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLS 169 ++ ++ R I I + Sbjct: 129 YINQKGR--------VIEIPRPLITR 146 >gi|221195857|ref|ZP_03568910.1| conserved hypothetical protein [Atopobium rimae ATCC 49626] gi|221184331|gb|EEE16725.1| conserved hypothetical protein [Atopobium rimae ATCC 49626] Length = 164 Score = 93.9 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 13/166 (7%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGN---MTLRDCEE 71 G I SV++ V + ++ K ++++ ++ D + ++L + Sbjct: 1 MSVEGSVERIISVLEERALGHDIDIVDVEVVGSAKAPVVRVRIDHADEDGKTISLDEVAA 60 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 + IS LD ++ G + LEVSSPG+DRP+ R DF R++G V+ + + +++ Sbjct: 61 ETGWISDALDEIDVFPGSFTLEVSSPGMDRPLRRVRDFERFSGSQVSLQTT-ALEGRRRY 119 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 GK++G E LE + + I + L T + Sbjct: 120 TGKLLGIQENIVSLESDG--------MTYDIPLTEIKKCTLKPTFD 157 >gi|171778094|ref|ZP_02919351.1| hypothetical protein STRINF_00186 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283076|gb|EDT48500.1| hypothetical protein STRINF_00186 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 146 Score = 93.9 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 69/150 (46%), Gaps = 9/150 (6%) Query: 28 VIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD--VEN 84 ++ P I+E F V + + + +L I +++ G +T+ D +L++ ISP+LD + Sbjct: 1 MVAPAIKE-PFELVDVEYGKMGSDYVLSILIDKP-GGITVNDTADLTEIISPLLDAIKPD 58 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEVSSPG++RP+ K + G V + + + G ++ Sbjct: 59 PFPEQYMLEVSSPGLERPLKTKEALEKALGSYVNVSLYKAIDKVKVFQGDLVAFDGETLT 118 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ + K + I + ++ ARL V Sbjct: 119 IDYLDKTRKK----TVEIPYSTVAKARLAV 144 >gi|332528134|ref|ZP_08404165.1| hypothetical protein RBXJA2T_19301 [Rubrivivax benzoatilyticus JA2] gi|332112705|gb|EGJ12498.1| hypothetical protein RBXJA2T_19301 [Rubrivivax benzoatilyticus JA2] Length = 194 Score = 93.9 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 76/154 (49%), Gaps = 16/154 (10%) Query: 29 IQPVIEEMSFRSVQISLLEEKNLLLQIFVER--------DDGNMTLRDCEELSQAISPIL 80 I+ + +S+ V++ LL++ ++R + +T+ DCE +++ + +L Sbjct: 25 IERTVTGLSYDLVEVE--RAGRGLLRVTIDRVPGHAYPVEGEFVTVEDCEAVTRQLQYVL 82 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 +VEN+ + RLEVSSPG+DRP+ R +D+ R++G + + ++ G + Sbjct: 83 EVENV--DYERLEVSSPGLDRPLRRAADYERFSGQEIELTLRQPFQGRKHWKGLLGKGEG 140 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G+ L + E +A S D + ARL+ Sbjct: 141 EGWNLVFQDGKA----EQVLAFSLDEVREARLVP 170 >gi|288574933|ref|ZP_06393290.1| protein of unknown function DUF150 [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570674|gb|EFC92231.1| protein of unknown function DUF150 [Dethiosulfovibrio peptidovorans DSM 11002] Length = 181 Score = 93.9 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 32/150 (21%), Positives = 77/150 (51%), Gaps = 12/150 (8%) Query: 26 SSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDV-- 82 I+ ++E + + + + + +E ++++++ G +++RDCE +S+ I+ L+ Sbjct: 8 KEEIREIVESLGYEFIGLEVKKESAASFVRVYMDSL-GGISVRDCEIVSRRINNWLEESG 66 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E++++ Y LEVSSPG++RP+ DF R++G + + ++++ G + + + Sbjct: 67 EDLLDDRYYLEVSSPGLERPLFSLDDFRRFSGKEASIRLNELVEGRRRINGIVSVSQDGS 126 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +E + + +LSA+L Sbjct: 127 IRVE--------NQDGAFEFPLEMILSAKL 148 >gi|229815166|ref|ZP_04445503.1| hypothetical protein COLINT_02212 [Collinsella intestinalis DSM 13280] gi|229809396|gb|EEP45161.1| hypothetical protein COLINT_02212 [Collinsella intestinalis DSM 13280] Length = 164 Score = 93.9 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 64/159 (40%), Gaps = 10/159 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDD-GNMTLRDCEELS 73 + DI ++ E V + ++ K +++ +++ + + L + + Sbjct: 1 MVKSKVEQDIIDALEARAAEHGIDIVDVEVVGATKAPCVRVRLDKLEGDPINLDEVTAQT 60 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 +S ++ + I Y LEVSSPG+ RP+ R SDF R+ G V ++ G Sbjct: 61 AWVSETVEALDPISSAYTLEVSSPGMKRPLRRPSDFARFVGEDVELTTTAM-EGRRSYKG 119 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 I ++ ++ E + I+FD + L Sbjct: 120 AIAAATDACVTIQPEGEDA-------VTIAFDDVKKCAL 151 >gi|309775436|ref|ZP_07670439.1| 15 kDa protein [Erysipelotrichaceae bacterium 3_1_53] gi|308916825|gb|EFP62562.1| 15 kDa protein [Erysipelotrichaceae bacterium 3_1_53] Length = 183 Score = 93.9 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 64/155 (41%), Gaps = 5/155 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M + +I P++ E ++ E K +LQ+ + DG+M + C S+ IS Sbjct: 29 MDQIEKLKKLITPLVAEDGIVLYDVAWHTEGKMRILQVSIMHKDGSMDIDTCAAQSEKIS 88 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LD ++I Y LEV SPG +R + + G V ++ ++ G + Sbjct: 89 AMLDELDLISSEYFLEVCSPGAERELKSEDQIKDAIGEFVYVKLKNPKAGMDEIKGTLTA 148 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +L+ + K E I D++ RL Sbjct: 149 FENHTVYLDYMAKAVKKKAE----IEMDNIALIRL 179 >gi|251772258|gb|EES52828.1| conserved protein of unknown function [Leptospirillum ferrodiazotrophum] Length = 171 Score = 93.5 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 36/138 (26%), Positives = 71/138 (51%), Gaps = 1/138 (0%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 ++ I +++ M + L ++ +L++FV+ + +T+ E +S+ +S +LDV Sbjct: 11 ERLTEEITLLLDSMGLTLYDLVLPKKSGGVLRVFVDGPE-GVTIDQIESVSRRVSVLLDV 69 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 + G Y LEVSSPG+DR + D + G V+ ++V + ++ L G+I + G Sbjct: 70 LDPFPGRYHLEVSSPGLDRLLKIPEDLRKNEGKWVSLKLVDAIEGQKVLKGRIGSVGDAG 129 Query: 143 FFLEKEKRGEKDMNELQI 160 FFL + + + E+ Sbjct: 130 FFLHVDAGKKSRILEVPF 147 >gi|325142813|gb|EGC65184.1| hypothetical protein NMB9615945_0622 [Neisseria meningitidis 961-5945] Length = 109 Score = 93.5 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 10/113 (8%) Query: 60 DDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVAC 119 +G +T+ DC +S +S + VE+I + LE+SSPG+DRP+ + +DF+R+ G Sbjct: 1 KEGGITVEDCATVSNHLSRVFMVEDI--DYKNLEISSPGLDRPLKKAADFVRFAGQNAKI 58 Query: 120 EIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + L ++ IGKI G + + + + I ++ ARL Sbjct: 59 KTRLPIDGQKNFIGKIEGCENDTVTISFDGK--------TVQIELGNIDKARL 103 >gi|295426317|ref|ZP_06818976.1| protein of hypothetical function DUF150 [Lactobacillus amylolyticus DSM 11664] gi|295063990|gb|EFG54939.1| protein of hypothetical function DUF150 [Lactobacillus amylolyticus DSM 11664] Length = 159 Score = 93.5 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 8/157 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDD-GNMTLRDCEELSQAI 76 + I S I+P+I++ V I ++EK L+I+V++D G + + + LS+ + Sbjct: 2 SKITDLIRSEIEPIIDQRGDEFVDIEYVKEKGQNYLRIYVDKDQLGGIDINEIAYLSELV 61 Query: 77 SPILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 S LD + + Y L +SSPG + P+ D+ + G V + K+ G Sbjct: 62 SEKLDSLDPDPLPDPYVLGLSSPGAEHPIKSAKDWTKARGEYVHVGLYQKIDGKKIYEGT 121 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 + S+ LE + + I + + R Sbjct: 122 LKSYSDEEIELEI----KIKTRRKTLNIPRKLIANIR 154 >gi|298490030|ref|YP_003720207.1| hypothetical protein Aazo_0596 ['Nostoc azollae' 0708] gi|298231948|gb|ADI63084.1| protein of unknown function DUF150 ['Nostoc azollae' 0708] Length = 153 Score = 93.5 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 1/147 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L I + PV E++ V I L ++ +L++ + + +L DCE +S+ + Sbjct: 5 LVPQIIDLAIPVAEQLGLEVVGIVLHTNQRPPVLRVDIRNTQQDTSLDDCERMSRVLEAS 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD II Y LEVSSPGI R ++ +F+ + G V +Q+ G+++ Sbjct: 65 LDAAEIIPDAYVLEVSSPGISRQLITDREFISFKGFPVVISTSQPYDGQQEWTGQLIRRG 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDS 166 ET +L ++ R + L + D Sbjct: 125 ETKIYLNQKGRVVEIPRPLVTRVQLDE 151 >gi|224373557|ref|YP_002607929.1| hypothetical protein NAMH_1540 [Nautilia profundicola AmH] gi|259585797|sp|B9L6E1|RIMP_NAUPA RecName: Full=Ribosome maturation factor rimP gi|223588517|gb|ACM92253.1| conserved hypothetical protein [Nautilia profundicola AmH] Length = 148 Score = 93.5 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 74/149 (49%), Gaps = 18/149 (12%) Query: 24 DISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 +++ +I+ ++E+ I L E + ++++ + G ++L DC +++ ISPI D+ Sbjct: 5 ELNDIIKNIVEDNGCDLYDIELSEEGGHKYFRVYITKP-GGVSLNDCAKINNLISPIFDI 63 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ +EG Y LEVSSPG++R + + F + G V + KL G++ + Sbjct: 64 EDPVEGKYFLEVSSPGLERKLTKPEHFEKSIGEKVKVTTNDGT----KLKGELKSFIDNV 119 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSAR 171 + KEK ++FD + A+ Sbjct: 120 AEIGKEK------------VNFDDIKKAK 136 >gi|306832817|ref|ZP_07465952.1| protein of hypothetical function DUF150 [Streptococcus bovis ATCC 700338] gi|304425052|gb|EFM28183.1| protein of hypothetical function DUF150 [Streptococcus bovis ATCC 700338] Length = 146 Score = 93.1 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 69/150 (46%), Gaps = 9/150 (6%) Query: 28 VIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD--VEN 84 ++ P I+E F V + + + +L I +++ + +T+ D EL++ ISP+LD + Sbjct: 1 MVAPAIKE-PFELVDVEYEKMGSDYVLSILIDKPE-GITVDDTAELTEIISPLLDAIKPD 58 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEVSSPG++RP+ K + G V + + + G ++ Sbjct: 59 PFPEQYMLEVSSPGLERPLKTKEALEKAVGSYVNVSLYKAIDKVKVFQGDLVAFDGDTLT 118 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ + K + I + ++ ARL V Sbjct: 119 IDYLDKTRKK----TVEIPYSTVAKARLAV 144 >gi|254382095|ref|ZP_04997457.1| conserved hypothetical protein [Streptomyces sp. Mg1] gi|194341002|gb|EDX21968.1| conserved hypothetical protein [Streptomyces sp. Mg1] Length = 170 Score = 93.1 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 6/153 (3%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++P++ I + + K +L++ V+ D+ + L C ELS+ IS LD Sbjct: 7 DRLRGLLEPLVAAKGLDLEDIEMSKAGKRRMLRVIVDSDE-GVELDTCAELSREISDQLD 65 Query: 82 VENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG-DKQKLIGKIMGTS 139 +++ E Y LEVSSPG DRP+ ++R G +V ++ +L+ +I+ Sbjct: 66 ESDVMGEDEYVLEVSSPGADRPLTEHRHYVRALGRLVKFQLTAGDDKGAGELVARILDVD 125 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + G LE + I+F + AR+ Sbjct: 126 DEGMDLEVPGVKGRKATAR--RIAFTDIAKARV 156 >gi|163815207|ref|ZP_02206584.1| hypothetical protein COPEUT_01365 [Coprococcus eutactus ATCC 27759] gi|158449402|gb|EDP26397.1| hypothetical protein COPEUT_01365 [Coprococcus eutactus ATCC 27759] Length = 129 Score = 93.1 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 68/134 (50%), Gaps = 9/134 (6%) Query: 42 QISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGID 100 + ++ + L+++ ++ +G +T+ DCE +++A+ +LD E+ I Y LEVSSPG+ Sbjct: 2 DVEYVKEGSDYYLRVYADK-EGGITINDCEIVNRALGDLLDQEDYISDAYILEVSSPGLT 60 Query: 101 RPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQI 160 RP+ +++DF R G VV + + ++ G + + +E E E ++ Sbjct: 61 RPLKKENDFKRSIGKVVEIKTFVKINGAKEFEGVLKAYDDATVTIEFED-------ETEV 113 Query: 161 AISFDSLLSARLIV 174 IS + RL Sbjct: 114 TISRKDISMIRLAF 127 >gi|237752794|ref|ZP_04583274.1| conserved hypothetical protein [Helicobacter winghamensis ATCC BAA-430] gi|229376283|gb|EEO26374.1| conserved hypothetical protein [Helicobacter winghamensis ATCC BAA-430] Length = 150 Score = 93.1 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 79/155 (50%), Gaps = 14/155 (9%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVER--DDGNMTLRDCEELSQA 75 M ++ ++ I+ ++E + F + L+E N +L+I + + + +++L DC+E+S A Sbjct: 1 MTISPNLEDKIKVLVESLGFDLYDVLTLKENENQILRICITKNMESKSVSLDDCQEVSLA 60 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +SP+LDVE Y LEVSSPGI+R + + + ++ + + K++ GK+ Sbjct: 61 LSPLLDVEMPDFEKYYLEVSSPGIERVLKTLAHYKGAINELIKVKTLQEIAGKKEFKGKL 120 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 + SE+ LE + I +++ A Sbjct: 121 VSVSESVLVLE-----------NGVEIPLNAIKKA 144 >gi|238063379|ref|ZP_04608088.1| hypothetical protein MCAG_04345 [Micromonospora sp. ATCC 39149] gi|237885190|gb|EEP74018.1| hypothetical protein MCAG_04345 [Micromonospora sp. ATCC 39149] Length = 232 Score = 93.1 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 70/166 (42%), Gaps = 19/166 (11%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 + +VI+PV+ + +S+ + + DG + L ++S+A+S LD Sbjct: 41 ARLHAVIEPVVNAAGYDLEDVSVSRAGRRHVVRVIVDADGGINLDAVADVSRAVSAALDA 100 Query: 83 E-----NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK--------- 128 +I+ G Y+LEVSSPG+DRP+ + R G +V + Sbjct: 101 AEEAGGDILAGEYQLEVSSPGVDRPLTLPRHWRRNVGRLVKVTARAVAPGPRAGDRQPTG 160 Query: 129 -QKLIGKIMGTSETGFFLEKE----KRGEKDMNELQIAISFDSLLS 169 +++ G+++ + LE + + ++ ++ + F L Sbjct: 161 DRQVTGRVVEADDERVVLETDSGRVEFSHAELGPGRVQVEFHRLDE 206 >gi|289805472|ref|ZP_06536101.1| hypothetical protein Salmonellaentericaenterica_13917 [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 86 Score = 93.1 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 1/87 (1%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I +E + + V I + + L+I+++ +D + + DC ++S +S +LDVE+ I Sbjct: 1 MITAPVEALGYELVGIEFIRGRTSTLRIYIDSED-GINVDDCADVSHQVSAVLDVEDPIS 59 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNG 114 Y LEVSSPG+DRPM + + G Sbjct: 60 VAYNLEVSSPGLDRPMFTADHYASFRG 86 >gi|332366409|gb|EGJ44160.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK355] Length = 177 Score = 92.8 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 70/157 (44%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + VI+P I + V I + + +L +FV++ + +T+ D +L+ ISP+ Sbjct: 25 IVELVREVIEPAILA-PYELVDIEYGKMGGDYVLSVFVDKPE-GITVNDTADLTDIISPL 82 Query: 80 LDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LEV+SPG++RP+ K G + + + ++ G ++ Sbjct: 83 LDQIKPDPFPEQYFLEVTSPGLERPLKTKEQLADAVGSYIHVSLYKAVDKQKVFEGTLLS 142 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + ++ I + + ARL V Sbjct: 143 FEEDVLRMEYLDK----TRRKEVEILYSLVSKARLAV 175 >gi|332707467|ref|ZP_08427515.1| hypothetical protein LYNGBM3L_38480 [Lyngbya majuscula 3L] gi|332353764|gb|EGJ33256.1| hypothetical protein LYNGBM3L_38480 [Lyngbya majuscula 3L] Length = 153 Score = 92.8 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 70/153 (45%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + + P+ +++ V+ + +L++++ + +L DCE +S+A+ Sbjct: 5 LIPQLIDLATPLAQDLGLEIVEALFQTNRRPPVLRVYIRNPIRDTSLDDCERMSRALEAQ 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + II Y LE+SSPGI + + +F+ + G V + +Q+ G+++ Sbjct: 65 LDAKEIILDTYVLEISSPGITQDLTTDREFISFKGFGVIVQTFEPYQGQQEWRGQLIRRD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 E+G +L + R AI + +L Sbjct: 125 ESGVYLNLKGRA--------FAIPRQLVSRVKL 149 >gi|225874865|ref|YP_002756324.1| hypothetical protein ACP_3325 [Acidobacterium capsulatum ATCC 51196] gi|259585657|sp|C1F695|RIMP_ACIC5 RecName: Full=Ribosome maturation factor rimP gi|225792684|gb|ACO32774.1| conserved hypothetical protein [Acidobacterium capsulatum ATCC 51196] Length = 201 Score = 92.8 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 69/194 (35%), Gaps = 42/194 (21%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVER---------------------- 59 I S Q V V + K+ +L+IF+E+ Sbjct: 6 DTIRSAAQRVASSHGLDVVDVEYQGGAKHRMLRIFIEKNAEERAKLAAQSSGRVETIEVH 65 Query: 60 -----------DDGNMTLRDCEELSQAISPILDVENIIEG--HYRLEVSSPGIDRPMVRK 106 +T DC S +LDVE ++ G Y LEVSSPG+DR + + Sbjct: 66 EEMPREGMNPEHFSGVTHEDCSAFSTDFGTLLDVEELMPGASEYTLEVSSPGLDRKLQSR 125 Query: 107 SDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKE------KRGEKDMNELQI 160 +D+ R+ G +V + G++ G L+ K EK + Sbjct: 126 ADYERFAGSLVKLSTFEPVNGNRHWQGRMAGLDGDTLRLDLTAMKQKGKGKEKKSAAETV 185 Query: 161 AISFDSLLSARLIV 174 I+ ++ A+LI Sbjct: 186 EIALGNVEKAQLIP 199 >gi|120612039|ref|YP_971717.1| hypothetical protein Aave_3385 [Acidovorax citrulli AAC00-1] gi|226703802|sp|A1TSK5|RIMP_ACIAC RecName: Full=Ribosome maturation factor rimP gi|120590503|gb|ABM33943.1| protein of unknown function DUF150 [Acidovorax citrulli AAC00-1] Length = 202 Score = 92.8 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 37/188 (19%), Positives = 74/188 (39%), Gaps = 42/188 (22%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD------------------DGNMTL 66 + +++ + + + V+I LL+I ++ + +T+ Sbjct: 3 LQQIVEQTVAGLGYDLVEIERSAGG--LLRITIDLPWQPPVEGAASDAAAPAGPEAFVTV 60 Query: 67 RDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 DCE++++ + L+V+ + + RLEVSSPGIDRP+ + DF R+ G V+ + G Sbjct: 61 EDCEKVTRQLQFALEVDGV--DYKRLEVSSPGIDRPLRHEQDFQRFAGEVIDITLKAPIG 118 Query: 127 ---------DKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQ-----------IAISFDS 166 +++K G + G+ + + + + D Sbjct: 119 DAAAGQVNANRKKFRGTLERAETGGWQIVWSDEPPPKPGQKVSKKRVPAPLQALGFTLDE 178 Query: 167 LLSARLIV 174 L ARL Sbjct: 179 LRDARLAP 186 >gi|302537259|ref|ZP_07289601.1| conserved hypothetical protein [Streptomyces sp. C] gi|302446154|gb|EFL17970.1| conserved hypothetical protein [Streptomyces sp. C] Length = 170 Score = 92.8 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 6/153 (3%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++P++ I L + K +L+I V+ D+ + L +C ELS+ IS LD Sbjct: 7 DRLRGLLEPLVAAKGLDLEDIELSKAGKRRMLRIIVDSDE-GVDLDECAELSREISDRLD 65 Query: 82 VENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV-LSSGDKQKLIGKIMGTS 139 +++ E Y LEVSSPG DRP+ + ++R G +V ++ +LI +I+G Sbjct: 66 ESDVMGEDEYNLEVSSPGADRPLSERRHYVRATGRLVKFQLSAEGEKGAGELIARILGVD 125 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + G LE + I+F + AR+ Sbjct: 126 DEGMDLEVPGVKGRKATAR--RIAFTDVAKARV 156 >gi|327459331|gb|EGF05677.1| protein of hypothetical function DUF150 [Streptococcus sanguinis SK1] Length = 177 Score = 92.8 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 70/157 (44%), Gaps = 9/157 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + VI+P I + + I + + +L +FV++ + +T+ D +L+ ISP+ Sbjct: 25 IVELVREVIEPAILA-PYELIDIEYGKMGGDYVLSVFVDKSE-GITVNDTADLTDIISPL 82 Query: 80 LDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LEV+SPG++RP+ K G + + + ++ G ++ Sbjct: 83 LDQIKPDPFPEQYFLEVTSPGLERPLKTKEQLADAVGSYINVSLYKAVDKQKVFEGTLLS 142 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + ++ I + + ARL V Sbjct: 143 FEEDVLHMEYLDK----TRRKEVEIPYSLVSKARLAV 175 >gi|145593915|ref|YP_001158212.1| hypothetical protein Strop_1367 [Salinispora tropica CNB-440] gi|259586196|sp|A4X4N4|RIMP_SALTO RecName: Full=Ribosome maturation factor rimP gi|145303252|gb|ABP53834.1| protein of unknown function DUF150 [Salinispora tropica CNB-440] Length = 220 Score = 92.8 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 68/152 (44%), Gaps = 10/152 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 + V++PV+ E + ++S+ + + DG + L ++S+A+S LD Sbjct: 40 ARLHEVVEPVVGEAGYDLEELSISRAGRRHVVQVIVDADGGIDLDAVADVSRAVSAALDA 99 Query: 83 E-----NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV-LSSGDKQKLIGKIM 136 +I+ G Y+LEVSSPG+ RP+ + R G +V + ++L G+++ Sbjct: 100 AEEARGDIVAGEYQLEVSSPGVSRPLTLPRHWRRNAGRLVRVTVRGGPDAGDRQLTGRVV 159 Query: 137 GTSETGFFLEKE----KRGEKDMNELQIAISF 164 + LE + ++ ++ + F Sbjct: 160 EADDEQVVLETDAGRAGWSYAELGPGRVQVEF 191 >gi|262037341|ref|ZP_06010806.1| conserved hypothetical protein [Leptotrichia goodfellowii F0264] gi|261748598|gb|EEY35972.1| conserved hypothetical protein [Leptotrichia goodfellowii F0264] Length = 178 Score = 92.8 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 73/170 (42%), Gaps = 12/170 (7%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQ 74 + IQ ++ + + ++E L+++VE+ DG +L DC ELS Sbjct: 15 IILEEILSKFEKEIQDSLDSLDLELSDLEYIQEGGYNYLRVYVEKKDGTTSLDDCIELSS 74 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 I + +N+I + LEVS+PG++R + ++ DF+R++G + K+ GK Sbjct: 75 KIDGL--ADNLINEKFYLEVSTPGVERKLKKEKDFIRFSGEKIKLHSKSQIEGKKTFEGK 132 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI---VTDELLRA 181 + FL + G+ + I L A LI D L + Sbjct: 133 LEKFENDTIFLNDQNIGK------TVEIPLSKLKKANLIYELPNDTLEKE 176 >gi|116618454|ref|YP_818825.1| hypothetical protein LEUM_1359 [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227431860|ref|ZP_03913884.1| protein of hypothetical function DUF150 [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|122271346|sp|Q03WH0|RIMP_LEUMM RecName: Full=Ribosome maturation factor rimP gi|116097301|gb|ABJ62452.1| hypothetical protein LEUM_1359 [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227352402|gb|EEJ42604.1| protein of hypothetical function DUF150 [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 158 Score = 92.8 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 68/160 (42%), Gaps = 14/160 (8%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGN-MTLRDCEELSQ 74 + +I P+IE + ++ +E +L+I +++ D +T+ D +Q Sbjct: 1 MANKTEQTVIDLISPIIEAHNDLLWDLTFTKEGGQKVLRILLDKPDHQFITMNDLTLFTQ 60 Query: 75 AISPILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWN--GHVVACEIVLSSGDKQK 130 ++ +LD + I Y L++SSPG DRP+ F + + ++ ++K Sbjct: 61 EVNELLDTVDPDPIPEAYVLDISSPGADRPLKELWHFEWAKEANENILVSLFVAKEGQKK 120 Query: 131 LIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 GKI ++ G L ++ ++FD + A Sbjct: 121 WQGKIADLNKDGLTLTTTN--------GRLPLTFDEIAKA 152 >gi|187478886|ref|YP_786910.1| hypothetical protein BAV2396 [Bordetella avium 197N] gi|123514388|sp|Q2KXY5|RIMP_BORA1 RecName: Full=Ribosome maturation factor rimP gi|115423472|emb|CAJ50006.1| conserved hypothetical protein [Bordetella avium 197N] Length = 159 Score = 92.8 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 75/152 (49%), Gaps = 7/152 (4%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 D+ ++ + + M V + LL++ ++R+D + + DCE++S+ +S + +V Sbjct: 2 ADLFALTEEALAGMGIELVDVE--RAALGLLRVTIDRED-GVRIEDCEQVSRQLSRVYEV 58 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS--E 140 ENI + RLEV SPG+DRP+ +++F R+ G + ++ + ++ G + Sbjct: 59 ENI--DYKRLEVGSPGVDRPLRNEAEFRRFAGERIEIKLREAVDGRKVFTGILQEADTSA 116 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + K + ++ + D + A+L Sbjct: 117 DDKTVFGLEFEAKKDDIQVLSFTLDDIERAKL 148 >gi|332522698|ref|ZP_08398950.1| hypothetical protein STRPO_1027 [Streptococcus porcinus str. Jelinkova 176] gi|332313962|gb|EGJ26947.1| hypothetical protein STRPO_1027 [Streptococcus porcinus str. Jelinkova 176] Length = 176 Score = 92.8 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 9/167 (5%) Query: 11 YEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDC 69 E + + + ++ + PVI+ F V + + + +L I V++ +G +T+ D Sbjct: 14 KEGIVIANQHIIDTVTETVSPVIKS-PFELVDVEYEKMGSDYILSILVDK-EGGITVEDT 71 Query: 70 EELSQAISPILDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD 127 EL++ ISP+LD + Y LEVSSPG++RP+ K + G V + + Sbjct: 72 TELTEIISPLLDQISPDPFPDQYMLEVSSPGLERPLKTKEAIEKAVGSYVNVSLYKAIDK 131 Query: 128 KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + G ++ ++ + + I + ++ ARL V Sbjct: 132 VKVFQGDLISFDGKTLTIDYLDK----TRHKVVDIPYQTVAKARLAV 174 >gi|149194181|ref|ZP_01871279.1| hypothetical protein CMTB2_03813 [Caminibacter mediatlanticus TB-2] gi|149136134|gb|EDM24612.1| hypothetical protein CMTB2_03813 [Caminibacter mediatlanticus TB-2] Length = 147 Score = 92.4 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 74/155 (47%), Gaps = 18/155 (11%) Query: 22 AGDISSVIQPVIEEMSFRSVQI-SLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++ +VI+ ++E+ I E ++ ++++ + G + L DC ++ ISPI Sbjct: 3 KEELKNVIKNIVEDNGCELYDIEETTEGEHKYFRVYITKP-GGVNLNDCTAINNLISPIF 61 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DVE+ ++G Y LEVSSPG++R + + F + G V + + K+ G++ + Sbjct: 62 DVEDPVDGKYFLEVSSPGVERKLTKSEHFEKSIGENVKVTLNDGT----KIKGQLKSFVD 117 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + KEK ++F+ + A+ V Sbjct: 118 NIAEIGKEK------------VNFEDIKKAKTYVD 140 >gi|332283700|ref|YP_004415611.1| hypothetical protein PT7_0447 [Pusillimonas sp. T7-7] gi|330427653|gb|AEC18987.1| hypothetical protein PT7_0447 [Pusillimonas sp. T7-7] Length = 164 Score = 92.4 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 44/158 (27%), Positives = 78/158 (49%), Gaps = 14/158 (8%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 DI ++ Q I M V + LL++ ++R + + + DCE++S+ +S + +V Sbjct: 2 ADIFALTQEAIAGMDVELVDVERAPLG--LLRVTIDRAE-GVRIEDCEQVSKHLSRVFEV 58 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 ENI + RLEV SPGIDRP+ R +DF+R+ V ++ + +++ G + + Sbjct: 59 ENI--DYKRLEVGSPGIDRPLKRVADFIRFANERVEIKLREAIDNRKVYAGVLRVSENVA 116 Query: 143 --------FFLEKEKRGEKDMNELQIAISFDSLLSARL 172 F LE E K+ + +FD + A+L Sbjct: 117 SDPSANPVFGLELEPTSRKEPA-QVLDFAFDDVDRAKL 153 >gi|91788289|ref|YP_549241.1| hypothetical protein Bpro_2424 [Polaromonas sp. JS666] gi|123164890|sp|Q12AU9|RIMP_POLSJ RecName: Full=Ribosome maturation factor rimP gi|91697514|gb|ABE44343.1| protein of unknown function DUF150 [Polaromonas sp. JS666] Length = 200 Score = 92.4 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 70/181 (38%), Gaps = 35/181 (19%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD-----DGNMTLRDCEELSQAISPI 79 + I+ + + + V+I LL++ ++ + + DCE++++ + + Sbjct: 3 LQETIEQTVTGLGYELVEIERTGGG--LLRVTIDMPYVSGAEQFINAEDCEKVTRQLQFV 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS-----------GDK 128 L+VE + RLEVSSPGIDRP+ + DF R+ G +V + ++ Sbjct: 61 LEVE--GADYSRLEVSSPGIDRPLRNEKDFERFAGELVDITLKAPIGVAASAGSAVSANR 118 Query: 129 QKLIGKI------MGTSETGFFLEKEKRGEKDMNELQIAIS---------FDSLLSARLI 173 +K G + G + E + + + D + ARL Sbjct: 119 KKFRGTLERAAPKDGVAGWQIVWSDEPPVKPGQKVSKKKLPAPLQALGFTLDEIHQARLA 178 Query: 174 V 174 Sbjct: 179 P 179 >gi|58337538|ref|YP_194123.1| hypothetical protein LBA1260 [Lactobacillus acidophilus NCFM] gi|75357528|sp|Q5FJN2|RIMP_LACAC RecName: Full=Ribosome maturation factor rimP gi|58254855|gb|AAV43092.1| hypothetical protein LBA1260 [Lactobacillus acidophilus NCFM] Length = 158 Score = 92.0 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 71/156 (45%), Gaps = 7/156 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAIS 77 + + V++ +I+E V + ++EK+ L+I+V+R+ + + + LS+ IS Sbjct: 2 SKVVNLVRPVVESIIDEHGDMLVNMEYIKEKSQNYLRIYVDREPNGIDIDEIAVLSELIS 61 Query: 78 PILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + + Y LE+SSPG +RP+ K+D+ + + + DK+ G + Sbjct: 62 EKLDTLDPDPLPDPYVLELSSPGAERPIKTKADWEKALNDYIHVGLYQKIEDKKMYEGTL 121 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 ++ LE + + + + + + R Sbjct: 122 KSYNDDEIILEVKDK----TRRKTLTVPRKLIANIR 153 >gi|239982634|ref|ZP_04705158.1| hypothetical protein SalbJ_24601 [Streptomyces albus J1074] gi|291454475|ref|ZP_06593865.1| UPF0090 protein [Streptomyces albus J1074] gi|291357424|gb|EFE84326.1| UPF0090 protein [Streptomyces albus J1074] Length = 174 Score = 92.0 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 6/158 (3%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQA 75 L+ + +I+P++ ++++ K +L++ V+ DD + L C +LS+ Sbjct: 1 MSTTLSDRLRELIEPLVSSQELDLEEVTVTPAGKRRVLRVVVDSDD-GVQLDTCADLSRT 59 Query: 76 ISPILDVENIIEG-HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 +S LD +++ Y LEV+SPG DRP+ F+R G +V + ++L+ + Sbjct: 60 VSARLDETDLMGESEYVLEVTSPGADRPLSEYRHFVRATGRLVKFHLT-PDAGAEELVAR 118 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 I E G LE G K Q + + AR+ Sbjct: 119 IEAVDEEGLDLEV--PGVKGRKPKQRRLPLKDVARARV 154 >gi|332638632|ref|ZP_08417495.1| ribosome maturation protein RimP [Weissella cibaria KACC 11862] Length = 228 Score = 92.0 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 72/163 (44%), Gaps = 7/163 (4%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + + +V+ P + + F + + +++L++ V+R DG + + D L++ I Sbjct: 3 NVVETVQAVLAPELADQGFDLWDVIYEKQGSDMVLRVLVDRLDGAINMDDLVMLTETIGE 62 Query: 79 ILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 +D + Y ++VSSPG +R + R D+ + + + + G+++ Sbjct: 63 RMDQIEPDPFPEAYLMDVSSPGAERELKRPQDYEWALEKYIHVALNQEVDGENEFDGELL 122 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELL 179 ++ L +G++ +I + ++ A L ++ E + Sbjct: 123 AVTDDMLTLAITVKGKRK----RIDVPRTAIKQANLTISQERI 161 >gi|33596481|ref|NP_884124.1| hypothetical protein BPP1860 [Bordetella parapertussis 12822] gi|51316795|sp|Q7W9A7|RIMP_BORPA RecName: Full=Ribosome maturation factor rimP gi|33566250|emb|CAE37161.1| conserved hypothetical protein [Bordetella parapertussis] Length = 168 Score = 92.0 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 76/161 (47%), Gaps = 16/161 (9%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 D+ ++ + + M V + LL++ ++R D + + DCE++S+ +S + +V Sbjct: 2 ADLFALTEEALAGMDIELVDVERAAMG--LLRVTIDRVD-GVRIEDCEQVSRQLSHVYEV 58 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 ENI + RLEV SPG+DRP+ +++F R+ G + ++ + ++ G + G Sbjct: 59 ENI--DYKRLEVGSPGVDRPLRNEAEFRRFAGERIEIKLREALDGRKVFSGTLRAPEADG 116 Query: 143 FFLEKEKRG-----------EKDMNELQIAISFDSLLSARL 172 + + G K + ++ + D + A+L Sbjct: 117 ASGQDDTAGAGKAVFGLEFEAKKNDIQVLSFTLDDIERAKL 157 >gi|260221429|emb|CBA29983.1| UPF0090 protein Daci_2988 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 199 Score = 92.0 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 76/185 (41%), Gaps = 39/185 (21%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD-----------DGNMTLRDCEELS 73 + +++ + + + V+I LL+I ++ + + + DCE+++ Sbjct: 3 LQEIVEQTVAGLGYDLVEIERSAGG--LLRITIDLPWVAPVEGQPVSEQFVNVEDCEKVT 60 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG------- 126 + + L+V+ + + RLEVSSPGIDRP+ DF R+ GHV+ + G Sbjct: 61 RQLQFALEVDGV--EYKRLEVSSPGIDRPLRHTQDFERFAGHVIDITLKAPMGAAANGQV 118 Query: 127 --DKQKLIGKIMGT----SETGFFLEKEKRGEKDMNELQ-----------IAISFDSLLS 169 +++K G + TG+ + E + + +FD L Sbjct: 119 SANRKKFRGTLERVPAADGSTGWQIVWSDAPEVKPGQKVSKKRVPPPLQALGFAFDELRD 178 Query: 170 ARLIV 174 ARL Sbjct: 179 ARLAP 183 >gi|310658998|ref|YP_003936719.1| hypothetical protein CLOST_1694 [Clostridium sticklandii DSM 519] gi|308825776|emb|CBH21814.1| conserved protein of unknown function [Clostridium sticklandii] Length = 152 Score = 91.6 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 81/157 (51%), Gaps = 12/157 (7%) Query: 21 LAGDISSVIQPVIEEM---SFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAI 76 +A + +I+ ++ +M F V + ++E + L+I++++ G M+L DC+ S I Sbjct: 1 MASKLELLIEGIVSDMITDPFELVDVEYVKEGSLKYLRIYIDK-QGKMSLDDCQHFSHLI 59 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 S LD + IE +Y LE+SSPG+DR + ++ DF+R G V ++ + ++ G ++ Sbjct: 60 SEKLDELDPIEENYMLEISSPGLDRHLKKEKDFIREKGKEVELKLFKAIDGVKEFEGTLV 119 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 G L ++ E ++ + ++ RL+ Sbjct: 120 G-------LSEDNEIEVQTSKGLMKFPKKNVAVIRLM 149 >gi|153813000|ref|ZP_01965668.1| hypothetical protein RUMOBE_03407 [Ruminococcus obeum ATCC 29174] gi|149830947|gb|EDM86037.1| hypothetical protein RUMOBE_03407 [Ruminococcus obeum ATCC 29174] Length = 129 Score = 91.6 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 52/87 (59%), Gaps = 2/87 (2%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 +++ P++E F V + ++E N L+ ++++ G +T+ DCE +S+A S L Sbjct: 35 EQKAEALLAPIVEGQGFELVDVEYVKEAGNWYLRGYIDKP-GGITVNDCEAVSRAFSDKL 93 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKS 107 D + IE Y +E+SSPG+DRP+ R+ Sbjct: 94 DENDFIEDSYIMEISSPGLDRPLKRRR 120 >gi|16329286|ref|NP_440014.1| hypothetical protein slr0742 [Synechocystis sp. PCC 6803] gi|1651766|dbj|BAA16694.1| slr0742 [Synechocystis sp. PCC 6803] Length = 176 Score = 91.6 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 9/145 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQ-ISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + DI ++ QP+ E++ + ++ +L+I + + +L DCE S++ Sbjct: 30 VIPDILALAQPIAEDLGLEVTDAVFQTNKRPPVLRIDIRNLQQDTSLNDCEAFSRSFEAQ 89 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 L+ ++I Y LEVSSPGI + + DF+ + G V + + G + G Sbjct: 90 LEESSLIASAYVLEVSSPGISPYLATERDFIAFKGFEVVVTSDNPHQGQSQWQGSLQGRD 149 Query: 140 ETGFFLEKEKRGEKDMNELQIAISF 164 +L R +AI Sbjct: 150 GEAVYLSIRGR--------TVAIPL 166 >gi|308233944|ref|ZP_07664681.1| hypothetical protein AvagD15_02782 [Atopobium vaginae DSM 15829] gi|328943956|ref|ZP_08241421.1| hypothetical protein HMPREF0091_10646 [Atopobium vaginae DSM 15829] gi|327491925|gb|EGF23699.1| hypothetical protein HMPREF0091_10646 [Atopobium vaginae DSM 15829] Length = 156 Score = 91.6 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 67/164 (40%), Gaps = 13/164 (7%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDD---GNMTLRDCEE 71 + + ++ V + L + ++++ ++ D +TL + Sbjct: 1 MSLEDIQTTLLKALEEAATPRGIDIVDVELAGTRTAPVIRLRIDHLDETLPTITLDEVAA 60 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 S+ I+ +LD + I+ Y LEVSSPG+ RP+ R DF R+ G V + +++ Sbjct: 61 QSEWINEVLDSLDPIDSSYTLEVSSPGLARPLRRIHDFERFCGQEVELVTR-ALEGRKRF 119 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 GK+ F L + + + + D + S ++ T Sbjct: 120 TGKLSSVEGNTFTLIVDGQD--------MTFTIDDVKSCKIKPT 155 >gi|322436507|ref|YP_004218719.1| protein of unknown function DUF150 [Acidobacterium sp. MP5ACTX9] gi|321164234|gb|ADW69939.1| protein of unknown function DUF150 [Acidobacterium sp. MP5ACTX9] Length = 207 Score = 91.2 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 72/200 (36%), Gaps = 48/200 (24%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDG------------------- 62 I + + V V + L++F+E+D Sbjct: 6 DTIRATAERVAASHHLEVVDVEFSGGAKFRSLRVFIEKDAESRAKLAAQLTAAQEASDSV 65 Query: 63 -------------------NMTLRDCEELSQAISPILDVENIIEG-HYRLEVSSPGIDRP 102 +T DC + ++ +LDVE+ I G Y LEVSSPG++R Sbjct: 66 EVGFELPVLPSGVPVESLSGVTHEDCADFARDFGTVLDVEDTIPGAEYTLEVSSPGLERK 125 Query: 103 MVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNE----- 157 + + +DF R++G ++ + + + G++ G + + + K + Sbjct: 126 LAKPADFARFSGFLIKLQTFTAVDGNRHFQGRLTGFNPEAQTIALDPSAVKQKGKSKKSA 185 Query: 158 ---LQIAISFDSLLSARLIV 174 + I+F ++ A LI Sbjct: 186 AAPQPVEIAFQNVEKANLIP 205 >gi|297562527|ref|YP_003681501.1| hypothetical protein Ndas_3595 [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846975|gb|ADH68995.1| protein of unknown function DUF150 [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 160 Score = 91.2 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 72/149 (48%), Gaps = 11/149 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 I+ +++PV+ E + L K +L++ V+ D + L E+SQ ++ +L Sbjct: 7 EERIAELLEPVLAEAGLDLEAVELTPAGKRRVLRVVVDS-DNGVDLDTVGEVSQEVNTLL 65 Query: 81 DVENIIE-GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 D +++ Y LEV+SPG+DRP+ + + R G +V + K+ G++ G Sbjct: 66 DSSDVMGAQPYVLEVTSPGVDRPLTQPRHWRRSRGRLVIASLAEGG----KVTGRVTGAD 121 Query: 140 ETGFFLEKEKR----GEKDMNELQIAISF 164 + G L+ E + ++ + ++ + F Sbjct: 122 DDGVTLDVEGQPRTFTHAELGKGRVQVEF 150 >gi|58427438|gb|AAW76475.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 160 Score = 91.2 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 34/127 (26%), Positives = 63/127 (49%), Gaps = 11/127 (8%) Query: 54 QIFVE-----RDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSD 108 +++++ + + + + DCE +S+ +S LDVE+ I GHY LEVSSPG+DRP+ Sbjct: 2 RLYIDVPLAEQPERVINVDDCERVSREVSAQLDVEDPISGHYTLEVSSPGVDRPLFTLEQ 61 Query: 109 FLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLL 168 F R G + L+ +++ G+I+ ++ + I FD++ Sbjct: 62 FARHAGESTKIVLKLAQDGRRRFQGEILRIDAEA------GAVVFAIDGKDVQIGFDNID 115 Query: 169 SARLIVT 175 AR++ Sbjct: 116 KARILPD 122 >gi|124002856|ref|ZP_01687708.1| 15 kDa protein [Microscilla marina ATCC 23134] gi|123992084|gb|EAY31471.1| 15 kDa protein [Microscilla marina ATCC 23134] Length = 152 Score = 91.2 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 75/156 (48%), Gaps = 9/156 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAIS 77 M ++++I+ +E + + + L +K L + ++ D +++ C LS+ + Sbjct: 1 MNQEEKLTTLIKEHLEPE-YFLIDVILKNQKPKAKLTVLIDG-DQGVSIDRCATLSRWLG 58 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 ++ EN+IEG Y LEVSSPG+D P+ + +++ G V + G + Sbjct: 59 KYIEEENLIEGAYTLEVSSPGVDLPLKNQRQYIKNIGRKVKVSLNEGGNK----TGVLEK 114 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + ++ EK+G+ + + I FD ++ +++ Sbjct: 115 VEDKLIVIQPEKKGKIIPEKEE--IPFDQIMKTKVM 148 >gi|241764250|ref|ZP_04762281.1| protein of unknown function DUF150 [Acidovorax delafieldii 2AN] gi|241366373|gb|EER60895.1| protein of unknown function DUF150 [Acidovorax delafieldii 2AN] Length = 197 Score = 91.2 bits (225), Expect = 7e-17, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 75/183 (40%), Gaps = 37/183 (20%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD-------------DGNMTLRDCEE 71 + V++ ++ + + V+I LL++ ++ + +T+ DCE+ Sbjct: 3 LQQVVEQIVTGLGYDLVEIERSPGG--LLRVTIDLPWVQPTVDAPVPATEQFITVEDCEK 60 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG----- 126 +++ + L+V+ + + RLEVSSPGIDRP+ + DF+R+ G V+ + G Sbjct: 61 VTRQLQFALEVDGV--EYKRLEVSSPGIDRPLRHEQDFVRFEGSVIDLTLKAPIGAAAAG 118 Query: 127 ----DKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQ-----------IAISFDSLLSAR 171 ++K G + G+ + + + + D L AR Sbjct: 119 QVSATRKKFRGLLSRAESGGWQIVWSDEPAVKPGQKVSKKRVPAPLQALGFTLDELRDAR 178 Query: 172 LIV 174 L Sbjct: 179 LAP 181 >gi|121594901|ref|YP_986797.1| hypothetical protein Ajs_2563 [Acidovorax sp. JS42] gi|120606981|gb|ABM42721.1| protein of unknown function DUF150 [Acidovorax sp. JS42] Length = 219 Score = 90.8 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 74/184 (40%), Gaps = 38/184 (20%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVE--------------RDDGNMTLRDCE 70 + +++ + + + V+I LL+I ++ + +T+ DCE Sbjct: 25 LQQIVEQTVAGLGYDLVEIERSAGG--LLRITIDLVWVPPTDEVSAAVGAEQFITVEDCE 82 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG---- 126 ++++ + L+VE + + RLEVSSPGIDR + ++DF R+ G V+ + G Sbjct: 83 KVTRQLQFALEVEGV--DYTRLEVSSPGIDRLLRNEADFKRFEGEVIDITLKQPMGAAAG 140 Query: 127 -----DKQKLIGKIMGTSETGFFLEKEK-----------RGEKDMNELQIAISFDSLLSA 170 +++K G + G+ + + + + D L A Sbjct: 141 GQVHANRKKFRGALERADSGGWQIVWSDEPPVKPGQRISKKRVPAPLQALGFTLDELREA 200 Query: 171 RLIV 174 RL Sbjct: 201 RLAP 204 >gi|282854641|ref|ZP_06263976.1| conserved hypothetical protein [Propionibacterium acnes J139] gi|282582223|gb|EFB87605.1| conserved hypothetical protein [Propionibacterium acnes J139] Length = 199 Score = 90.8 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 70/176 (39%), Gaps = 13/176 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVER---DDGNMTLRDCEELSQAIS 77 A ++ +++PV+ ++ ++ ++ + L+++ ++ D +L + E + IS Sbjct: 24 AERLTRLLEPVVSQVGLELDRVDVVPAGRRRLVRVTIDGDGPDGHGPSLDEISEATAEIS 83 Query: 78 PILDVENIIEGH-YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ---KLIG 133 LD + Y LEVSS G+ P+ + + R GH+V + + ++ G Sbjct: 84 HCLDDSGAMGESPYTLEVSSRGVSTPLTQPRHYRRNIGHLVRFTL-NPAEGQKSGETFDG 142 Query: 134 KIMGTSETGFFLEKEKRGEKDMNE--LQIAISFDSLLSARLIVTDELLRASLNNYG 187 +I E LE E K + + A +V EL R Sbjct: 143 RIAEAGEEVVTLEVEAENSKPHKPVYTTREVQLADVAKA--VVQVELNRRDAQASK 196 >gi|33592373|ref|NP_880017.1| hypothetical protein BP1245 [Bordetella pertussis Tohama I] gi|33602224|ref|NP_889784.1| hypothetical protein BB3248 [Bordetella bronchiseptica RB50] gi|51316792|sp|Q7VYR4|RIMP_BORPE RecName: Full=Ribosome maturation factor rimP gi|51316959|sp|Q7WHG0|RIMP_BORBR RecName: Full=Ribosome maturation factor rimP gi|33572018|emb|CAE41541.1| conserved hypothetical protein [Bordetella pertussis Tohama I] gi|33576662|emb|CAE33740.1| conserved hypothetical protein [Bordetella bronchiseptica RB50] gi|332381789|gb|AEE66636.1| hypothetical protein BPTD_1235 [Bordetella pertussis CS] Length = 168 Score = 90.8 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 76/161 (47%), Gaps = 16/161 (9%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 D+ ++ + + M V + LL++ ++R D + + DCE++S+ +S + +V Sbjct: 2 ADLFALTEEALAGMDIELVDVERAAMG--LLRVTIDRVD-GVRIEDCEQVSRQLSRVYEV 58 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 ENI + RLEV SPG+DRP+ +++F R+ G + ++ + ++ G + G Sbjct: 59 ENI--DYKRLEVGSPGVDRPLRNEAEFRRFAGERIEIKLREALDGRKVFSGTLRAPEADG 116 Query: 143 FFLEKEKRG-----------EKDMNELQIAISFDSLLSARL 172 + + G K + ++ + D + A+L Sbjct: 117 ASGQDDTAGAGKAVFGLEFEAKKNDIQVLSFTLDDIERAKL 157 >gi|218282330|ref|ZP_03488620.1| hypothetical protein EUBIFOR_01202 [Eubacterium biforme DSM 3989] gi|218216703|gb|EEC90241.1| hypothetical protein EUBIFOR_01202 [Eubacterium biforme DSM 3989] Length = 173 Score = 90.8 bits (224), Expect = 9e-17, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 65/160 (40%), Gaps = 8/160 (5%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 ++ I+ V+ E + + + LL++ VE++DG M L C S Sbjct: 17 TKEKCMDNLKEWIEEVLNENGCHLYDLEWITNQGTPLLRVSVEKEDGTMDLDTCASCSDV 76 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I +LD ++ Y LEV SPG +R + + R G V ++ ++IG + Sbjct: 77 IGQMLDEKDWYSHEYMLEVCSPGAERELRTDEEVQRAVGKYVFVKMKDPKQGLDQVIGDL 136 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + +E + + +I I ++ LI+T Sbjct: 137 VEATENDVTISYRDK----TRTKKITIEKSNIQ---LIMT 169 >gi|313889634|ref|ZP_07823277.1| conserved hypothetical protein [Streptococcus pseudoporcinus SPIN 20026] gi|313121931|gb|EFR45027.1| conserved hypothetical protein [Streptococcus pseudoporcinus SPIN 20026] Length = 176 Score = 90.4 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 9/167 (5%) Query: 11 YEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDC 69 E + + + + + PVI F V + + + LL I V+R +G +T+ D Sbjct: 14 KEGIVIANQHIIDTVMETVSPVIRP-PFELVDVEYEKMGSDYLLSILVDR-EGGITVEDT 71 Query: 70 EELSQAISPILDV--ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD 127 EL++ ISP+LD + Y LEVSSPG++RP+ K + G V + + Sbjct: 72 TELTEIISPLLDQISPDPFPDQYMLEVSSPGLERPLKTKEAIEKAVGSYVNVSLYKAIDK 131 Query: 128 KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + G ++ ++ + +AI + ++ ARL V Sbjct: 132 VKVFQGDLISFDGETLMIDYLDK----TRHKVVAIPYQTVAKARLAV 174 >gi|314923906|gb|EFS87737.1| conserved hypothetical protein [Propionibacterium acnes HL001PA1] gi|314966034|gb|EFT10133.1| conserved hypothetical protein [Propionibacterium acnes HL082PA2] gi|314981919|gb|EFT26012.1| conserved hypothetical protein [Propionibacterium acnes HL110PA3] gi|315090734|gb|EFT62710.1| conserved hypothetical protein [Propionibacterium acnes HL110PA4] gi|315094982|gb|EFT66958.1| conserved hypothetical protein [Propionibacterium acnes HL060PA1] gi|327328083|gb|EGE69852.1| hypothetical protein HMPREF9341_01135 [Propionibacterium acnes HL103PA1] Length = 178 Score = 90.4 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 70/176 (39%), Gaps = 13/176 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVER---DDGNMTLRDCEELSQAIS 77 A ++ +++PV+ ++ ++ ++ + L+++ ++ D +L + E + IS Sbjct: 3 AERLTRLLEPVVSQVGLELDRVDVVPAGRRRLVRVTIDGDGPDGHGPSLDEISEATAEIS 62 Query: 78 PILDVENIIEGH-YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ---KLIG 133 LD + Y LEVSS G+ P+ + + R GH+V + + ++ G Sbjct: 63 HCLDDSGAMGESPYTLEVSSRGVSTPLTQPRHYRRNIGHLVRFTL-NPAEGQKSGETFDG 121 Query: 134 KIMGTSETGFFLEKEKRGEKDMNE--LQIAISFDSLLSARLIVTDELLRASLNNYG 187 +I E LE E K + + A +V EL R Sbjct: 122 RIAEAGEEVVTLEVEAENSKPHKPVYTTREVQLADVAKA--VVQVELNRRDAQASK 175 >gi|159027909|emb|CAO89716.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 156 Score = 90.4 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 1/147 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L D+ + P+ E + V I ++ +L++ + G+ L DCE++S+++ Sbjct: 5 LIPDLLHLATPIAENLGLEVVDIVFQTNKRPPVLRVDIRNLAGDTGLEDCEQMSRSLETA 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + I+ G Y LE+SSPGI R + + +F + G V S G Q+ GK+ G Sbjct: 65 LDSQEILPGAYVLEISSPGISRQLSSEREFHSFKGFPVIVTGQDSQGKPQEWRGKLQGRD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDS 166 E +L ++ R I++ D Sbjct: 125 EQSIYLNQKGRSLTIDRTTVISVRLDE 151 >gi|89900916|ref|YP_523387.1| hypothetical protein Rfer_2132 [Rhodoferax ferrireducens T118] gi|122479183|sp|Q21WJ7|RIMP_RHOFD RecName: Full=Ribosome maturation factor rimP gi|89345653|gb|ABD69856.1| protein of unknown function DUF150 [Rhodoferax ferrireducens T118] Length = 204 Score = 90.4 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 40/205 (19%), Positives = 75/205 (36%), Gaps = 47/205 (22%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD----------DGNMTLRDCEELSQ 74 + +++ + + + V+I LL+I ++ + +T+ DCE++++ Sbjct: 3 LKEIVEQTVAGLGYDLVEIERSAGG--LLRITIDLPWVPGTAGSEAEQFVTVEDCEKVTR 60 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG-------- 126 + L+V+ + + RLEVSSPGIDRP+ DF R+ G + + G Sbjct: 61 QLLFALEVDGV--DYKRLEVSSPGIDRPLRHGQDFERFVGREIDVTLKAPIGAAAGALVN 118 Query: 127 -DKQKLIGKIMGTSETG----------FFLEKEKRGEKDMNELQIAIS---------FDS 166 ++K G + T + + + + D Sbjct: 119 ATRKKFRGTLERTQSSNGESGVVPGWQIVWSDAPEVKPGQRVSKKRLPAPLQALGFTLDE 178 Query: 167 LLSARLIVTDELLRASLNNYGSYAG 191 L ARL S G+ AG Sbjct: 179 LKEARLAPIV-----SFKGRGAKAG 198 >gi|317121852|ref|YP_004101855.1| hypothetical protein Tmar_1015 [Thermaerobacter marianensis DSM 12885] gi|315591832|gb|ADU51128.1| protein of unknown function DUF150 [Thermaerobacter marianensis DSM 12885] Length = 153 Score = 90.4 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 62/145 (42%), Gaps = 10/145 (6%) Query: 31 PVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGH 89 P+ E + ++ + LQ V+R G +T+ +C SQA+ P+L ++ Sbjct: 16 PLAEARGLVLLDVAYRREGRRWFLQCVVDRP-GGVTMDECAAFSQALDPVLAGVEGLDED 74 Query: 90 YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEK 149 +EV SPG+DR + +F + G V +++ +G++ G + + E+ Sbjct: 75 VVVEVMSPGLDRTLRNDREFDWFRGREVEVATFRPVEGRRRFVGRLEGLEDGDVVITDEE 134 Query: 150 RGEKDMNELQIAISFDSLLSARLIV 174 I D++ A+L V Sbjct: 135 GAH--------RIPRDAVAKAQLYV 151 >gi|330466359|ref|YP_004404102.1| hypothetical protein VAB18032_11940 [Verrucosispora maris AB-18-032] gi|328809330|gb|AEB43502.1| hypothetical protein VAB18032_11940 [Verrucosispora maris AB-18-032] Length = 175 Score = 90.4 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 68/157 (43%), Gaps = 15/157 (9%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE---- 83 +I PV++ + +S+ + + DG + L ++S+A+S LD Sbjct: 1 MIAPVVDSAGYDLEDLSVSRAGRRHVVRVIVDADGGINLDAVADVSRAVSAALDAAEESG 60 Query: 84 -NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG------DKQKLIGKIM 136 +I+ G Y+LEVSSPG+DRP+ + R G +V + + +++ G+++ Sbjct: 61 GDIVAGEYQLEVSSPGVDRPLTLPRHWRRNVGRLVRVTVRGAGESGARPAGDRQVTGRVV 120 Query: 137 GTSETGFFLEKEKR----GEKDMNELQIAISFDSLLS 169 + LE + D+ ++ + F L Sbjct: 121 AADDESVALEVDGERVQWPYADLGPGRVQVEFSRLDE 157 >gi|34223734|sp|P72687|RIMP_SYNY3 RecName: Full=Ribosome maturation factor rimP Length = 151 Score = 90.4 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 9/145 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQ-ISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + DI ++ QP+ E++ + ++ +L+I + + +L DCE S++ Sbjct: 5 VIPDILALAQPIAEDLGLEVTDAVFQTNKRPPVLRIDIRNLQQDTSLNDCEAFSRSFEAQ 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 L+ ++I Y LEVSSPGI + + DF+ + G V + + G + G Sbjct: 65 LEESSLIASAYVLEVSSPGISPYLATERDFIAFKGFEVVVTSDNPHQGQSQWQGSLQGRD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISF 164 +L R +AI Sbjct: 125 GEAVYLSIRGR--------TVAIPL 141 >gi|325962804|ref|YP_004240710.1| hypothetical protein Asphe3_14020 [Arthrobacter phenanthrenivorans Sphe3] gi|323468891|gb|ADX72576.1| uncharacterized conserved protein [Arthrobacter phenanthrenivorans Sphe3] Length = 192 Score = 90.4 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 72/158 (45%), Gaps = 11/158 (6%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDG---NMTLRDCEELSQAISP 78 A + ++++P ++ ++++ + ++ + V+ + L ++S+ +S Sbjct: 16 AARLRALLEPAVQANRLYLEDVAIVAGSHRVVHVVVDLPQEETGGVGLDVIADISKVLSD 75 Query: 79 ILDVENIIEG-HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LD + +G Y LEVSSPG+ RP+ + R G +V ++ + G+I Sbjct: 76 VLDNDPGDDGRPYDLEVSSPGVGRPLTEPRHWHRAKGRLVKVNVLQGDN----VTGRIQA 131 Query: 138 TSETGFFLEKE---KRGEKDMNELQIAISFDSLLSARL 172 + G + E K+G K + + FD + + ++ Sbjct: 132 VDDAGVTIVPEIAVKKGMKPRQGDPVKLPFDRIRNGKV 169 >gi|294339929|emb|CAZ88292.1| conserved hypothetical protein [Thiomonas sp. 3As] Length = 191 Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 64/118 (54%), Gaps = 5/118 (4%) Query: 26 SSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDG-NMTLRDCEELSQAISPILDVEN 84 + I + + V++ L LL++ ++ DG +T+ DCE +++ + + +VEN Sbjct: 4 AQAIDTAVTSLGLELVEVEHLPRG--LLRVTIDHADGAPVTVEDCERVTRQLQYVFEVEN 61 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 + + RLEVSSPG+DRP+ + DF+R+ G + + + ++K G ++ S+ Sbjct: 62 V--DYGRLEVSSPGLDRPLRKSEDFVRFAGLEIDVVLRVPFQGRKKYRGVLLERSQDD 117 >gi|294815428|ref|ZP_06774071.1| Conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|326443781|ref|ZP_08218515.1| ribosome maturation protein RimP [Streptomyces clavuligerus ATCC 27064] gi|294328027|gb|EFG09670.1| Conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] Length = 165 Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 9/152 (5%) Query: 23 GDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++P++ +I L + L+I V+ +D TL C ELS+AIS LD Sbjct: 7 ERLRELLEPLVTAAGLDLEEIELARAGRRRQLRIVVDSED-GATLDACAELSRAISQKLD 65 Query: 82 VENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + + E Y LEVSSPG DRP+ ++R G +V + L+ +++ + Sbjct: 66 ESDAMGEDEYVLEVSSPGADRPLTEHRHYVRATGRLVKLHLADGGE----LVARVLTVDD 121 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G LE + ++ F + AR+ Sbjct: 122 EGLDLEVPGVKGRKPTARRVT--FADIAKARV 151 >gi|317495159|ref|ZP_07953529.1| hypothetical protein HMPREF0432_00131 [Gemella moribillum M424] gi|316914581|gb|EFV36057.1| hypothetical protein HMPREF0432_00131 [Gemella moribillum M424] Length = 154 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 74/157 (47%), Gaps = 6/157 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAIS 77 M + + ++ ++ + + ++E + L+I+ ++ DG +TL DC LS+ ++ Sbjct: 1 MSIVQRVKAIADEQTKDTVYSLYDVEYVKEGSEFFLRIYFDK-DGGLTLDDCVLLSEKLA 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD E+ I Y LEVSSPGI+R + + + G V + ++++ G I+ Sbjct: 60 EELDKEDFISDKYYLEVSSPGIERELRNLEEVIDSIGKHVYIKTYEKVDNQKEFYGDILD 119 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + +E + + + IS++ + RL V Sbjct: 120 VEDKEITIEYKDKARVKKS----IISYEKIAKIRLAV 152 >gi|260889855|ref|ZP_05901118.1| UPF0090 protein [Leptotrichia hofstadii F0254] gi|260860461|gb|EEX74961.1| UPF0090 protein [Leptotrichia hofstadii F0254] Length = 162 Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 9/156 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 + + I+ ++EM+ + + + L+++VE+ DG TL DC + S+ I Sbjct: 2 EQILNEFEKKIKQHLKEMNLELADLEYVRDGGYNYLRVYVEKLDGTTTLDDCIDFSREID 61 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 I +++IE + LEVS+PG++R + + DF+R+ G + + + +K IGK+ Sbjct: 62 GI--ADDLIEEKFFLEVSTPGVERRLRKPKDFVRFLGERINVQAKSNIEGAKKFIGKLEK 119 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 FL +K E + I L A LI Sbjct: 120 FENDTVFLLDDK------LEKIVEIPLSKLKKANLI 149 >gi|257784635|ref|YP_003179852.1| hypothetical protein Apar_0832 [Atopobium parvulum DSM 20469] gi|257473142|gb|ACV51261.1| protein of unknown function DUF150 [Atopobium parvulum DSM 20469] Length = 164 Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 68/159 (42%), Gaps = 13/159 (8%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGN---MTLRDCEE 71 + G+ I S ++ V + ++ KN L+++ ++ DD ++L + + Sbjct: 1 MQNEGVTQKILSALEQAALNHHIDIVDVEIVGSSKNPLVRVRIDHDDETEETISLDEVAQ 60 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 + IS +D + + LEVSSPG+ RP+ R DF+R+ G V + ++ ++K Sbjct: 61 ETSWISETIDELDPFPASFTLEVSSPGMARPLRRAKDFVRFAGQEVQLQTT-ATEGRRKF 119 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 G ++G T ++ E I L Sbjct: 120 TGTLLGIEGTTISIQTEDEVC--------TIDLSELKKC 150 >gi|296135766|ref|YP_003643008.1| protein of unknown function DUF150 [Thiomonas intermedia K12] gi|295795888|gb|ADG30678.1| protein of unknown function DUF150 [Thiomonas intermedia K12] Length = 191 Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 64/118 (54%), Gaps = 5/118 (4%) Query: 26 SSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDG-NMTLRDCEELSQAISPILDVEN 84 + I + + V++ L LL++ ++ DG +T+ DCE +++ + + +VEN Sbjct: 4 AQAIDTAVTSLGLELVEVEHLPRG--LLRVTIDHADGAPVTVEDCERVTRQLQYVFEVEN 61 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 + + RLEVSSPG+DRP+ + DF+R+ G + + + ++K G ++ S+ Sbjct: 62 V--DYGRLEVSSPGLDRPLRKAEDFVRFAGLEIDVVLRVPFQGRKKYRGVLLERSQDD 117 >gi|333024105|ref|ZP_08452169.1| hypothetical protein STTU_1611 [Streptomyces sp. Tu6071] gi|332743957|gb|EGJ74398.1| hypothetical protein STTU_1611 [Streptomyces sp. Tu6071] Length = 197 Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 70/152 (46%), Gaps = 9/152 (5%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++P++ ++++ + +LQI V+ D ++L C ELS+ IS +LD Sbjct: 21 ERLRELVEPLVTARDLDLEEVTVTPAGRRRVLQIVVDG-DSGVSLDTCAELSREISTVLD 79 Query: 82 VENIIEGHYR-LEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + + + LEV+SPG DRP+ ++R G +V ++ L+ +++ + Sbjct: 80 DTDAMGENEYVLEVTSPGADRPLTAHRHYVRATGRLVRFQLAEGGE----LVARLLKADD 135 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G LE + ++ + AR+ Sbjct: 136 AGLDLEVPGVKGRKPTSRRLEFP--EISKARV 165 >gi|284030870|ref|YP_003380801.1| hypothetical protein Kfla_2937 [Kribbella flavida DSM 17836] gi|283810163|gb|ADB32002.1| protein of unknown function DUF150 [Kribbella flavida DSM 17836] Length = 178 Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 37/150 (24%), Positives = 75/150 (50%), Gaps = 15/150 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + + ++P++E+ + + LL++ V+R DG ++L D ++++AIS LD + Sbjct: 13 LENFLRPLVEQFGCDLEAAEVTPAGRRRLLRVLVDR-DGGISLDDVADVTRAISKALDAD 71 Query: 84 NII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 +++ +G Y LEVSSPG+DRP+ + R +VA + KL G+I S+ Sbjct: 72 DVMGDGAYTLEVSSPGVDRPLTLPRHWRRNISRLVAVTLHSGD----KLTGRIKTVSDET 127 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARL 172 L+ + +++ + A++ Sbjct: 128 ADLDVDGTLR--------TVAYADVDKAKV 149 >gi|293400741|ref|ZP_06644886.1| putative SP14.3 protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305767|gb|EFE47011.1| putative SP14.3 protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 155 Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 65/150 (43%), Gaps = 5/150 (3%) Query: 24 DISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 I +I+P++ + +S + KN +LQ+ + R DG+M + C +S+ IS LD Sbjct: 6 KIKELIKPLLAQEDIELYDVSWQQEGKNRILQVAIMRKDGSMDIDTCAAMSEKISEKLDE 65 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 ++I Y LEV SPG +R + ++ V ++ + G + Sbjct: 66 VDMIASEYFLEVCSPGAERELKDETQIQDALDEYVYVKLKNPKAGMDAVKGYLRAYENGD 125 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +E + K +I I D++ RL Sbjct: 126 ITMEYMDKAVKK----KITIDGDNIALIRL 151 >gi|297156813|gb|ADI06525.1| hypothetical protein SBI_03404 [Streptomyces bingchenggensis BCW-1] Length = 180 Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 9/152 (5%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++P++ ++ + K +L+I V+ DD + L C ELS+AIS LD Sbjct: 7 ERLRGLLEPLVSARDLDLEEVEVTPAGKRRVLRIVVDSDD-GVQLDACAELSRAISQTLD 65 Query: 82 VENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + + Y LEV+SPG DRP+ + R G ++ + L+ +I + Sbjct: 66 DTDAMGRHPYVLEVTSPGADRPLTEPRHYRRAAGRLMKARLAEGGE----LVARITAVDD 121 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G L+ E G K ++F + AR+ Sbjct: 122 EG--LDVEVPGVKGRRPTARRLAFKEISKARV 151 >gi|313897501|ref|ZP_07831044.1| conserved hypothetical protein [Clostridium sp. HGF2] gi|312957871|gb|EFR39496.1| conserved hypothetical protein [Clostridium sp. HGF2] Length = 155 Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 63/155 (40%), Gaps = 5/155 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 M + +I ++ E ++ E + +LQ+ + DG+M + C S+ IS Sbjct: 1 MDQIQKLKELITLLVAEDGIELYDVAWHTEGSMRILQVSIMHKDGSMDIDTCAAQSEKIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LD ++I Y LEV SPG +R + + G V ++ ++ G + Sbjct: 61 TMLDEMDMIASEYFLEVCSPGAERELKSEEQIRDAIGEFVYVKLKNPRAGMDEIKGTLTA 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 +L+ + K E I D++ RL Sbjct: 121 FENNTVYLDYMAKAVKKKAE----IEMDNIALIRL 151 >gi|229820978|ref|YP_002882504.1| protein of unknown function DUF150 [Beutenbergia cavernae DSM 12333] gi|259585729|sp|C5BWS6|RIMP_BEUC1 RecName: Full=Ribosome maturation factor rimP gi|229566891|gb|ACQ80742.1| protein of unknown function DUF150 [Beutenbergia cavernae DSM 12333] Length = 162 Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 70/160 (43%), Gaps = 14/160 (8%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGN--MTLRDCEELSQ 74 D L G + +++PV +++ + +++ ++ DG + D + S+ Sbjct: 6 DTALLGRLRDLLEPVAAGCGLHLEDVAVSPAGRRRRVRVTLDLADGPGALGSNDLADASR 65 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 A+S LD +++ G Y LEVS+PG DRP+ + F R G +V + + + G+ Sbjct: 66 AVSAALDDADVVTGPYVLEVSTPGTDRPLTQPRHFRRAQGRLVTLTLAAGTH----VSGR 121 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ + G + + ++ + + R+ V Sbjct: 122 LLSADDDGIHVRTD-------AGATTTFAYADVATGRVEV 154 >gi|264677929|ref|YP_003277836.1| hypothetical protein CtCNB1_1794 [Comamonas testosteroni CNB-2] gi|262208442|gb|ACY32540.1| hypothetical conserved protein [Comamonas testosteroni CNB-2] Length = 192 Score = 89.3 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 75/182 (41%), Gaps = 36/182 (19%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD------------DGNMTLRDCEEL 72 + +++ + + + V+I LL+I ++ + +T+ DCE++ Sbjct: 3 LQQIVEQTVTGLGYDLVEIERSAGG--LLRITIDLPWQAPEEGAPELPEQFVTVEDCEKV 60 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG------ 126 ++ + L+V+ + RLEVSSPGIDR + + DF+R+ G V + G Sbjct: 61 TRQLQFALEVD--GADYARLEVSSPGIDRLLRHEQDFIRFEGSEVDLTLKAPIGAAGGDK 118 Query: 127 ---DKQKLIGKIMGTSETGFFLEKEK-----------RGEKDMNELQIAISFDSLLSARL 172 +++K G + T E G+ + + + + + D L ARL Sbjct: 119 INANRKKFRGTLERTEEGGWQIVWSDEPPPKPGVRVSKKREPAPLNAMGFTLDELREARL 178 Query: 173 IV 174 Sbjct: 179 AP 180 >gi|227497550|ref|ZP_03927778.1| YhbC family protein [Actinomyces urogenitalis DSM 15434] gi|226833004|gb|EEH65387.1| YhbC family protein [Actinomyces urogenitalis DSM 15434] Length = 154 Score = 89.3 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 66/159 (41%), Gaps = 16/159 (10%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDD--GNMTLRDCEELSQA 75 ++ ++ PV+E+ + +++ V+ D G++ L E++Q Sbjct: 7 TATTERLTELLTPVVEQAGLFLEGVETTRAGRYSTVRVIVDLPDGPGDLDLDAVAEVTQT 66 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S LD + ++G Y LEV+SPG +R + F R GH Q L G + Sbjct: 67 VSDALDEADPVKGQYTLEVTSPGAERELTTPRTFRRATGHQARLVTA-----GQTLTGTV 121 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E +E + + I++ LL AR++V Sbjct: 122 RSADEETVTVEVDG--------SEQTIAYTDLLEARMVV 152 >gi|313829612|gb|EFS67326.1| conserved hypothetical protein [Propionibacterium acnes HL063PA2] gi|315109016|gb|EFT80992.1| conserved hypothetical protein [Propionibacterium acnes HL030PA2] Length = 178 Score = 89.3 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 70/175 (40%), Gaps = 11/175 (6%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDD---GNMTLRDCEELSQAIS 77 A ++ +++PV+ ++ ++ ++ + L+++ ++ D +L + E + IS Sbjct: 3 AERLTRLLEPVVSQVGLELDRVDVVPAGRRRLVRVTIDGDGPDGHGPSLDEISEATAEIS 62 Query: 78 PILDVENIIEGH-YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK--QKLIGK 134 LD + Y LEVSS G+ P+ + + R GH+V + + K + G+ Sbjct: 63 HCLDDSGAMGESPYTLEVSSRGVSTPLTQPRHYRRNIGHLVRFTLNPAEEQKSGETFDGR 122 Query: 135 IMGTSETGFFLEKEKRGEKDMNE--LQIAISFDSLLSARLIVTDELLRASLNNYG 187 I E LE E K + + A +V EL R Sbjct: 123 IAEAGEEVVTLEVEAENSKPHKPLYTTREVQLADVAKA--VVQVELNRRDAQASK 175 >gi|221067738|ref|ZP_03543843.1| protein of unknown function DUF150 [Comamonas testosteroni KF-1] gi|220712761|gb|EED68129.1| protein of unknown function DUF150 [Comamonas testosteroni KF-1] Length = 192 Score = 89.3 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 75/182 (41%), Gaps = 36/182 (19%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD------------DGNMTLRDCEEL 72 + +++ + + + V+I LL+I ++ + +T+ DCE++ Sbjct: 3 LQQIVEQTVTGLGYDLVEIERSAGG--LLRITIDLPWQAPEEGVPELPEQFVTVEDCEKV 60 Query: 73 SQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG------ 126 ++ + L+V+ + RLEVSSPGIDR + + DF+R+ G V + G Sbjct: 61 TRQLQFALEVD--GADYARLEVSSPGIDRLLRHEQDFIRFEGSEVDLTLKAPIGAAGGDK 118 Query: 127 ---DKQKLIGKIMGTSETGFFLEKEK-----------RGEKDMNELQIAISFDSLLSARL 172 +++K G + T E G+ + + + + + D L ARL Sbjct: 119 INANRKKFRGTLERTEEGGWQIVWSDEPPPKPGVRVSKKREPAPLNAMGFTLDELREARL 178 Query: 173 IV 174 Sbjct: 179 AP 180 >gi|289426404|ref|ZP_06428147.1| conserved hypothetical protein [Propionibacterium acnes SK187] gi|289153132|gb|EFD01850.1| conserved hypothetical protein [Propionibacterium acnes SK187] Length = 197 Score = 89.3 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 70/175 (40%), Gaps = 11/175 (6%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDD---GNMTLRDCEELSQAIS 77 A ++ +++PV+ ++ ++ ++ + L+++ ++ D +L + E + IS Sbjct: 22 AERLTRLLEPVVSQVGLELDRVDVVPAGRRRLVRVTIDGDGPDGHGPSLDEISEATAEIS 81 Query: 78 PILDVENIIEGH-YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK--QKLIGK 134 LD + Y LEVSS G+ P+ + + R GH+V + + K + G+ Sbjct: 82 HCLDDSGAMGESPYTLEVSSRGVSTPLTQPRHYRRNIGHLVRFTLNPAEEQKSGETFDGR 141 Query: 135 IMGTSETGFFLEKEKRGEKDMNE--LQIAISFDSLLSARLIVTDELLRASLNNYG 187 I E LE E K + + A +V EL R Sbjct: 142 IAEAGEEVVTLEVEAENSKPHKPVYTTREVQLADVAKA--VVQVELNRRDAQASK 194 >gi|149925032|ref|ZP_01913350.1| hypothetical protein PPSIR1_10025 [Plesiocystis pacifica SIR-1] gi|149814096|gb|EDM73722.1| hypothetical protein PPSIR1_10025 [Plesiocystis pacifica SIR-1] Length = 174 Score = 89.3 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 72/172 (41%), Gaps = 24/172 (13%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + + I+PV +M + ++ I + +L++F++ +T+ DC + + I LD Sbjct: 1 MEAAIEPVCADMGYEALLIEWSGSGQRRVLRVFLDSP-KGVTIADCTRMGRLIGNSLDAA 59 Query: 84 N--------------IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI----VLSS 125 ++ Y LEVSSPG+DRP+ +K F G V + + Sbjct: 60 EAAVEAGEGNPALAALLAPGYTLEVSSPGVDRPLAKKRHFTAQVGGRVKLKTWESPAAAD 119 Query: 126 GDKQKLIGKIMGTSETGFFLEKEKRG----EKDMNELQIAISFDSLLSARLI 173 D++ G+++ + E ++RG + I I + A L+ Sbjct: 120 ADERSFNGRLVAVHDDDAAPEDQRRGTVVVHDPERDRTIPIPLPLIRRANLV 171 >gi|50842973|ref|YP_056200.1| hypothetical protein PPA1495 [Propionibacterium acnes KPA171202] gi|289428787|ref|ZP_06430470.1| conserved hypothetical protein [Propionibacterium acnes J165] gi|295131044|ref|YP_003581707.1| hypothetical protein HMPREF0675_4562 [Propionibacterium acnes SK137] gi|81611447|sp|Q6A7M3|RIMP_PROAC RecName: Full=Ribosome maturation factor rimP gi|50840575|gb|AAT83242.1| conserved protein [Propionibacterium acnes KPA171202] gi|289158185|gb|EFD06405.1| conserved hypothetical protein [Propionibacterium acnes J165] gi|291375538|gb|ADD99392.1| conserved hypothetical protein [Propionibacterium acnes SK137] gi|313763590|gb|EFS34954.1| conserved hypothetical protein [Propionibacterium acnes HL013PA1] gi|313773528|gb|EFS39494.1| conserved hypothetical protein [Propionibacterium acnes HL074PA1] gi|313793984|gb|EFS42008.1| conserved hypothetical protein [Propionibacterium acnes HL110PA1] gi|313801371|gb|EFS42622.1| conserved hypothetical protein [Propionibacterium acnes HL110PA2] gi|313807950|gb|EFS46431.1| conserved hypothetical protein [Propionibacterium acnes HL087PA2] gi|313811581|gb|EFS49295.1| conserved hypothetical protein [Propionibacterium acnes HL083PA1] gi|313813359|gb|EFS51073.1| conserved hypothetical protein [Propionibacterium acnes HL025PA1] gi|313816770|gb|EFS54484.1| conserved hypothetical protein [Propionibacterium acnes HL059PA1] gi|313819519|gb|EFS57233.1| conserved hypothetical protein [Propionibacterium acnes HL046PA2] gi|313822157|gb|EFS59871.1| conserved hypothetical protein [Propionibacterium acnes HL036PA1] gi|313823609|gb|EFS61323.1| conserved hypothetical protein [Propionibacterium acnes HL036PA2] gi|313825932|gb|EFS63646.1| conserved hypothetical protein [Propionibacterium acnes HL063PA1] gi|313831321|gb|EFS69035.1| conserved hypothetical protein [Propionibacterium acnes HL007PA1] gi|313834931|gb|EFS72645.1| conserved hypothetical protein [Propionibacterium acnes HL056PA1] gi|313839908|gb|EFS77622.1| conserved hypothetical protein [Propionibacterium acnes HL086PA1] gi|314914744|gb|EFS78575.1| conserved hypothetical protein [Propionibacterium acnes HL005PA4] gi|314919294|gb|EFS83125.1| conserved hypothetical protein [Propionibacterium acnes HL050PA1] gi|314920796|gb|EFS84627.1| conserved hypothetical protein [Propionibacterium acnes HL050PA3] gi|314924648|gb|EFS88479.1| conserved hypothetical protein [Propionibacterium acnes HL036PA3] gi|314930475|gb|EFS94306.1| conserved hypothetical protein [Propionibacterium acnes HL067PA1] gi|314954367|gb|EFS98773.1| conserved hypothetical protein [Propionibacterium acnes HL027PA1] gi|314957447|gb|EFT01550.1| conserved hypothetical protein [Propionibacterium acnes HL002PA1] gi|314962085|gb|EFT06186.1| conserved hypothetical protein [Propionibacterium acnes HL002PA2] gi|314963664|gb|EFT07764.1| conserved hypothetical protein [Propionibacterium acnes HL082PA1] gi|314968508|gb|EFT12606.1| conserved hypothetical protein [Propionibacterium acnes HL037PA1] gi|314974196|gb|EFT18292.1| conserved hypothetical protein [Propionibacterium acnes HL053PA1] gi|314976695|gb|EFT20790.1| conserved hypothetical protein [Propionibacterium acnes HL045PA1] gi|314978821|gb|EFT22915.1| conserved hypothetical protein [Propionibacterium acnes HL072PA2] gi|314984333|gb|EFT28425.1| conserved hypothetical protein [Propionibacterium acnes HL005PA1] gi|314986522|gb|EFT30614.1| conserved hypothetical protein [Propionibacterium acnes HL005PA2] gi|314990881|gb|EFT34972.1| conserved hypothetical protein [Propionibacterium acnes HL005PA3] gi|315079514|gb|EFT51507.1| conserved hypothetical protein [Propionibacterium acnes HL053PA2] gi|315081256|gb|EFT53232.1| conserved hypothetical protein [Propionibacterium acnes HL078PA1] gi|315083454|gb|EFT55430.1| conserved hypothetical protein [Propionibacterium acnes HL027PA2] gi|315087140|gb|EFT59116.1| conserved hypothetical protein [Propionibacterium acnes HL002PA3] gi|315089312|gb|EFT61288.1| conserved hypothetical protein [Propionibacterium acnes HL072PA1] gi|315095335|gb|EFT67311.1| conserved hypothetical protein [Propionibacterium acnes HL038PA1] gi|315099218|gb|EFT71194.1| conserved hypothetical protein [Propionibacterium acnes HL059PA2] gi|315100431|gb|EFT72407.1| conserved hypothetical protein [Propionibacterium acnes HL046PA1] gi|315106775|gb|EFT78751.1| conserved hypothetical protein [Propionibacterium acnes HL030PA1] gi|327328402|gb|EGE70164.1| hypothetical protein HMPREF9338_01419 [Propionibacterium acnes HL096PA2] gi|327329732|gb|EGE71488.1| hypothetical protein HMPREF9337_01796 [Propionibacterium acnes HL096PA3] gi|327334249|gb|EGE75963.1| hypothetical protein HMPREF9344_01150 [Propionibacterium acnes HL097PA1] gi|327444189|gb|EGE90843.1| hypothetical protein HMPREF9571_02320 [Propionibacterium acnes HL043PA2] gi|327444932|gb|EGE91586.1| hypothetical protein HMPREF9570_01994 [Propionibacterium acnes HL043PA1] gi|327446417|gb|EGE93071.1| hypothetical protein HMPREF9568_00999 [Propionibacterium acnes HL013PA2] gi|327451994|gb|EGE98648.1| hypothetical protein HMPREF9584_02200 [Propionibacterium acnes HL092PA1] gi|327454969|gb|EGF01624.1| hypothetical protein HMPREF9581_01157 [Propionibacterium acnes HL087PA3] gi|327457745|gb|EGF04400.1| hypothetical protein HMPREF9586_00321 [Propionibacterium acnes HL083PA2] gi|328752172|gb|EGF65788.1| hypothetical protein HMPREF9563_02441 [Propionibacterium acnes HL020PA1] gi|328755196|gb|EGF68812.1| hypothetical protein HMPREF9579_01223 [Propionibacterium acnes HL087PA1] gi|328758324|gb|EGF71940.1| hypothetical protein HMPREF9588_00964 [Propionibacterium acnes HL025PA2] gi|328760060|gb|EGF73640.1| hypothetical protein HMPREF9343_02215 [Propionibacterium acnes HL099PA1] gi|332675924|gb|AEE72740.1| ribosome maturation factor RimP [Propionibacterium acnes 266] Length = 178 Score = 89.3 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 70/175 (40%), Gaps = 11/175 (6%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDD---GNMTLRDCEELSQAIS 77 A ++ +++PV+ ++ ++ ++ + L+++ ++ D +L + E + IS Sbjct: 3 AERLTRLLEPVVSQVGLELDRVDVVPAGRRRLVRVTIDGDGPDGHGPSLDEISEATAEIS 62 Query: 78 PILDVENIIEGH-YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK--QKLIGK 134 LD + Y LEVSS G+ P+ + + R GH+V + + K + G+ Sbjct: 63 HCLDDSGAMGESPYTLEVSSRGVSTPLTQPRHYRRNIGHLVRFTLNPAEEQKSGETFDGR 122 Query: 135 IMGTSETGFFLEKEKRGEKDMNE--LQIAISFDSLLSARLIVTDELLRASLNNYG 187 I E LE E K + + A +V EL R Sbjct: 123 IAEAGEEVVTLEVEAENSKPHKPVYTTREVQLADVAKA--VVQVELNRRDAQASK 175 >gi|254423906|ref|ZP_05037624.1| conserved hypothetical protein [Synechococcus sp. PCC 7335] gi|196191395|gb|EDX86359.1| conserved hypothetical protein [Synechococcus sp. PCC 7335] Length = 154 Score = 88.9 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 2/135 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERD-DGNMTLRDCEELSQAISP 78 L + + PV + + V + +L++ V + L DCE LS A++ Sbjct: 5 LIPQVLELAAPVADRVGLEIVDAVFQTNQSPPVLRLDVRNPTQEDTGLNDCERLSIALTE 64 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LD N+I Y LEVSSPG+ + DF + G V + KQ G ++G Sbjct: 65 ALDESNLIPDAYVLEVSSPGVSDVLSSDRDFKVFKGFPVEVRLSEPYKSKQIWRGSLIGR 124 Query: 139 SETGFFLEKEKRGEK 153 + L + R K Sbjct: 125 DDDKLTLNLKGRPVK 139 >gi|295098917|emb|CBK88006.1| Uncharacterized protein conserved in bacteria [Eubacterium cylindroides T2-87] Length = 154 Score = 88.9 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 8/152 (5%) Query: 25 ISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + I+PV+ E I L + +LQI VE+ DG M L C S I +LD + Sbjct: 6 LKEWIEPVLNEKDCVLYDIEWLTNQNPPILQISVEKQDGTMDLDTCAMCSDVIGTLLDNK 65 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + Y LEV SPG +R + G V +++ +++G + ++ Sbjct: 66 DWYTKEYMLEVCSPGAERELKTDQQLRDAIGKYVYVKLIDPKQGLDQVLGDLKEVNDDSI 125 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 + ++ I I +++ +I+T Sbjct: 126 IV----AYKEKTRNKTIEIDRNNI---NVIMT 150 >gi|322378931|ref|ZP_08053345.1| hypothetical protein HSUHS1_0574 [Helicobacter suis HS1] gi|322379785|ref|ZP_08054082.1| hypothetical protein HSUHS5_0146 [Helicobacter suis HS5] gi|321147753|gb|EFX42356.1| hypothetical protein HSUHS5_0146 [Helicobacter suis HS5] gi|321148607|gb|EFX43093.1| hypothetical protein HSUHS1_0574 [Helicobacter suis HS1] Length = 152 Score = 88.9 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 75/152 (49%), Gaps = 13/152 (8%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDV 82 ++ ++++ ++ M ++ L+E +L+I ++ +G +L CEE S ISP+LDV Sbjct: 6 ELENLLETTLKGMGCALYDVAFLKENKRDILRISIKALEGPTSLDICEEASLLISPLLDV 65 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 + Y LEVSS G++R + + F G +V C+ + ++ +L G I + + Sbjct: 66 HAPFKNAYTLEVSSMGLERSLSKLKHFKLSIGDLVECKTIENT----RLKGVIQAVNGSS 121 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L+ + E + F+++ A+ I Sbjct: 122 IVLQCAEGLEN--------LPFENIKKAKTIF 145 >gi|328955635|ref|YP_004372968.1| protein of unknown function DUF150 [Coriobacterium glomerans PW2] gi|328455959|gb|AEB07153.1| protein of unknown function DUF150 [Coriobacterium glomerans PW2] Length = 167 Score = 88.9 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 66/161 (40%), Gaps = 11/161 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGN-MTLRDCEELS 73 L + ++ V + L K +++ +E+ DG+ ++L D + Sbjct: 1 MVKTKLEQRLIDALEAEASARDIDIVDVELTGATKAPCVRVRLEKADGSALSLDDVCAQN 60 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI--VLSSGDKQKL 131 +S +++ + + G Y LEVSSPG+ RP+ R DF R+ G + +L Sbjct: 61 CWVSAVVEDIDPVAGRYTLEVSSPGMARPLRRPRDFARFVGQTAQIGFIQTQGPDGRSRL 120 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G I +E + + +A+ F+++ A L Sbjct: 121 TGLIQSANEDCVTI-------APKDGEPLAVPFEAIKKATL 154 >gi|269120927|ref|YP_003309104.1| hypothetical protein Sterm_2319 [Sebaldella termitidis ATCC 33386] gi|268614805|gb|ACZ09173.1| protein of unknown function DUF150 [Sebaldella termitidis ATCC 33386] Length = 157 Score = 88.9 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 11/151 (7%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 +I I ++EM+ + + E L+I++ER DG ++ DC S+ I P++ Sbjct: 7 EIEKTIASYLDEMNLELADLEYVPEGGYNYLRIYIERVDGVTSIEDCVSFSEKIDPLI-- 64 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E+ I+ + LEVS+PGI+R + ++ DFLR+ G + + DK+ L G ++ Sbjct: 65 EDFIKDKFFLEVSTPGIERRLRKEKDFLRFKGKKIRLALKSKVNDKKVLTGDLVDFISNE 124 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 ++ E I I + + A LI Sbjct: 125 VVVDVEGTL--------INIPLEKVKKANLI 147 >gi|291279909|ref|YP_003496744.1| hypothetical protein DEFDS_1528 [Deferribacter desulfuricans SSM1] gi|290754611|dbj|BAI80988.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 158 Score = 88.9 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 65/156 (41%), Gaps = 11/156 (7%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISP 78 + + S ++ ++ I EK +L+IF+E D+ + L DC +S+ +S Sbjct: 7 SIKEKVKSYLEENVKNEFLDIYDIQFRREKSGWVLRIFIEGDN--VGLSDCISVSKQVSK 64 Query: 79 ILDVENIIE-GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG-DKQKLIGKIM 136 LD +II +Y LEVS+PG R + +F ++ G ++V ++ G I Sbjct: 65 WLDEVDIIPYENYNLEVSTPGATREIRNLDEFKKYIGKYCKIKLVEHDKYGRKNYKGYIK 124 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 L E+ + I + + A L Sbjct: 125 NVEGDIITLFVEE------ENKEFEIDYYLVKKANL 154 >gi|86609688|ref|YP_478450.1| hypothetical protein CYB_2246 [Synechococcus sp. JA-2-3B'a(2-13)] gi|123501415|sp|Q2JJI0|RIMP_SYNJB RecName: Full=Ribosome maturation factor rimP gi|86558230|gb|ABD03187.1| conserved hypothetical protein [Synechococcus sp. JA-2-3B'a(2-13)] Length = 156 Score = 88.9 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 3/148 (2%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVE--RDDGNMTLRDCEELSQAIS 77 L + S+ +P+ ++ ++ VQ+ + +L++ + D + DCE +SQA+ Sbjct: 5 LIPQLESLARPLAAQLGYQLVQMVFHTNQHPPVLRVDIRPLDPDRETSHADCEAMSQALE 64 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD ++I G Y LEVSSPGI + DF+ + G V + K G ++G Sbjct: 65 VELDRVDLIPGQYVLEVSSPGISNLLTSDRDFVVFKGFAVEVTLDPPYKGKAVWSGHLLG 124 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFD 165 E L + R + ++ Sbjct: 125 RDEERVALSLKGRRVQLPRASVQRVALS 152 >gi|154174423|ref|YP_001408783.1| hypothetical protein CCV52592_0357 [Campylobacter curvus 525.92] gi|259585735|sp|A7GZZ1|RIMP_CAMC5 RecName: Full=Ribosome maturation factor rimP gi|112802245|gb|EAT99589.1| protein conserved hypothetical protein [Campylobacter curvus 525.92] Length = 138 Score = 88.9 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 15/147 (10%) Query: 29 IQPVIEEMSFRSVQISLLEEKNLLL-QIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 + +++E + E + +I++ + +G ++L DCE++S+ +SPI DVE I Sbjct: 4 LNELVKECGVELYDTEIANENGRAIYRIYITK-NGGVSLDDCEKVSRLLSPIFDVEPPIS 62 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 G Y LEVSSPG++R + F G +V + + K G+++ + LE Sbjct: 63 GDYNLEVSSPGLERKLSEARHFKASLGELVKAQTAEA-----KFAGRLVKADDESIALEN 117 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 + E I + A+ + Sbjct: 118 D--------EGVFEIKIGDIKKAKTYL 136 >gi|166364177|ref|YP_001656450.1| YhbC family protein [Microcystis aeruginosa NIES-843] gi|226734161|sp|B0JU70|RIMP_MICAN RecName: Full=Ribosome maturation factor rimP gi|166086550|dbj|BAG01258.1| YhbC family protein [Microcystis aeruginosa NIES-843] Length = 156 Score = 88.5 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 1/147 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L D+ + P+ E + V I ++ +L++ + G+ L DCE++S+A+ Sbjct: 5 LIPDLLHLAIPIAENLGLEVVDIVFQTNKRPPVLRVDIRNLAGDTGLEDCEQMSRALETA 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + I+ G Y LE+SSPGI R + + +F + G V S G Q+ GK+ G Sbjct: 65 LDSQEILPGAYVLEISSPGISRQLSSEREFQSFKGFPVIVTGQDSQGKPQEWRGKLQGRD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDS 166 E +L ++ R I++ D Sbjct: 125 EQSIYLNQKGRSLTIDRTTVISVRLDE 151 >gi|294507806|ref|YP_003571864.1| hypothetical protein SRM_01991 [Salinibacter ruber M8] gi|294344134|emb|CBH24912.1| conserved hypothetical protein [Salinibacter ruber M8] Length = 160 Score = 88.5 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 79/159 (49%), Gaps = 10/159 (6%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQA 75 LA +S + + VI + V + + K +++++++ ++ + D +S+ Sbjct: 9 TQQHLADRVSGLTEEVIVGTDYFLVDVEVRGHKGTRVVEVYIDSEEE-VGHDDLALISKE 67 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 + +LDVE++++G Y+LE+SSPGI RP+ + + + G + S GD++ ++G + Sbjct: 68 VGFLLDVEDVVDGSYKLELSSPGIKRPLTMPAQYRKNVGRTLRVR-FESDGDEEIVVGDL 126 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + LE + ++ + + ++ AR+ + Sbjct: 127 TDADDEEIELEL-------PSAERLQLPYTTITQARIEL 158 >gi|251783185|ref|YP_002997490.1| hypothetical protein SDEG_1793 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391817|dbj|BAH82276.1| hypothetical protein SDEG_1793 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 149 Score = 88.5 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 66/153 (43%), Gaps = 9/153 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 ++ + P I+ + V + + + +L I V++ +G +T+ D +L+ ISP+LD Sbjct: 1 MTKTVAPEIKA-PYELVDVEYDKMGSDYVLSILVDK-EGGITVEDTSDLTDIISPLLDTI 58 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + Y LEVSSPG++RP+ G V + + + G ++ Sbjct: 59 TPDPFPDQYMLEVSSPGLERPLKTVESLKAAVGSYVNVSLYKAIDKVKVFQGDLLAFDGE 118 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ + + I + ++ ARL V Sbjct: 119 TLTIDYLDK----TRHKTVDIPYQTVAKARLAV 147 >gi|315604482|ref|ZP_07879547.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str. F0310] gi|315313809|gb|EFU61861.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str. F0310] Length = 156 Score = 88.5 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 68/150 (45%), Gaps = 15/150 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERD--DGNMTLRDCEELSQAISPILD 81 + ++ P++E+ ++ + LL++ V+ G + +S+A+S LD Sbjct: 10 LEELLAPIVEQAGLELESVTRSRSDHTPLLRVIVDAPIGAGGVDSDALANVSRAVSRALD 69 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + I+G Y LEVS+PG +R + + +LR G +V ++ + G+++ E+ Sbjct: 70 DADPIDGEYLLEVSTPGAERELTKVDHWLRQVGRLVRVKLRAGGH----VSGRVVDADES 125 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 G ++ + I++ + AR Sbjct: 126 GATIDVDGNAT--------TIAYSDMRKAR 147 >gi|222110448|ref|YP_002552712.1| hypothetical protein Dtpsy_1245 [Acidovorax ebreus TPSY] gi|254800004|sp|B9MGN9|RIMP_DIAST RecName: Full=Ribosome maturation factor rimP gi|221729892|gb|ACM32712.1| protein of unknown function DUF150 [Acidovorax ebreus TPSY] Length = 197 Score = 88.1 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 74/184 (40%), Gaps = 38/184 (20%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVE--------------RDDGNMTLRDCE 70 + +++ + + + V+I LL+I ++ + +T+ DCE Sbjct: 3 LQQIVEQTVAGLGYDLVEIERSAGG--LLRITIDLVWVPPTDEVSAAVGVEQFITVEDCE 60 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG---- 126 ++++ + L+VE + + RLEVSSPGIDR + ++DF R+ G V+ + G Sbjct: 61 KVTRQLQFALEVEGV--DYTRLEVSSPGIDRLLRNEADFKRFEGEVIDITLKQPMGAAAG 118 Query: 127 -----DKQKLIGKIMGTSETGFFLEKEKRGEKDMNE-----------LQIAISFDSLLSA 170 +++K G + G+ + + + + D L A Sbjct: 119 GQVHANRKKFRGTLERADSGGWQIVWSDEPPVKPGQRISKKRVPAPLQALGFTLDELREA 178 Query: 171 RLIV 174 RL Sbjct: 179 RLAP 182 >gi|259586215|sp|Q2S1N5|RIMP_SALRD RecName: Full=Ribosome maturation factor rimP Length = 155 Score = 88.1 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 79/159 (49%), Gaps = 10/159 (6%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQA 75 LA +S + + VI + V + + K +++++++ ++ + D +S+ Sbjct: 4 TQQHLADRVSGLTEEVIVGTDYFLVDVEVRGHKGTRVVEVYIDSEEE-VGHDDLALISKE 62 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 I +LDVE++++G Y+LE+SSPGI RP+ + + + G + S GD++ ++G + Sbjct: 63 IGFLLDVEDVVDGSYKLELSSPGIKRPLTMPAQYRKNVGRTLRVR-FESDGDEEIVVGDL 121 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + LE + ++ + + ++ AR+ + Sbjct: 122 TDADDEEIELEL-------PSAERLQLPYTTITQARIEL 153 >gi|206602207|gb|EDZ38689.1| Conserved protein of unknown function [Leptospirillum sp. Group II '5-way CG'] Length = 167 Score = 88.1 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 62/153 (40%), Gaps = 9/153 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 M ++ ++ P + + L + + ++FV+ + L E +S+ IS Sbjct: 1 MRFEKELDHILTP----LGLSLHDLVLPGKNGGVFKVFVDHP-KGVGLDQLEAVSRRISD 55 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LDV + G YRLEVSSPG+DR + D L G + + ++ G I Sbjct: 56 LLDVLDPFPGKYRLEVSSPGLDRVLRIPEDLLLHVGKHIKVKTKEPLQGQRVFRGTIGSL 115 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 + + +L+ +I D + R Sbjct: 116 EAGVLLIS----SVEGKKQLKHSIPLDLVAEVR 144 >gi|259585710|sp|A1W8Z6|RIMP_ACISJ RecName: Full=Ribosome maturation factor rimP Length = 197 Score = 88.1 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 74/184 (40%), Gaps = 38/184 (20%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVE--------------RDDGNMTLRDCE 70 + +++ + + + V+I LL+I ++ + +T+ DCE Sbjct: 3 LQQIVEQTVAGLGYDLVEIERSAGG--LLRITIDLVWVPPTDEVSAAVGAEQFITVEDCE 60 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG---- 126 ++++ + L+VE + + RLEVSSPGIDR + ++DF R+ G V+ + G Sbjct: 61 KVTRQLQFALEVEGV--DYTRLEVSSPGIDRLLRNEADFKRFEGEVIDITLKQPMGAAAG 118 Query: 127 -----DKQKLIGKIMGTSETGFFLEKEKRGEKDMNE-----------LQIAISFDSLLSA 170 +++K G + G+ + + + + D L A Sbjct: 119 GQVHANRKKFRGALERADSGGWQIVWSDEPPVKPGQRISKKRVPAPLQALGFTLDELREA 178 Query: 171 RLIV 174 RL Sbjct: 179 RLAP 182 >gi|160913531|ref|ZP_02076222.1| hypothetical protein EUBDOL_00007 [Eubacterium dolichum DSM 3991] gi|158434083|gb|EDP12372.1| hypothetical protein EUBDOL_00007 [Eubacterium dolichum DSM 3991] Length = 181 Score = 88.1 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 40/161 (24%), Positives = 66/161 (40%), Gaps = 7/161 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSV--QISLLE-EKNLLLQIFVERDDGNMTLRDCEE 71 IF + + Q V + + V ++ + KN +LQI + R DG M + C E Sbjct: 21 IFKKENVMEHNEKIKQLVSDVLGDELVLYDVAWHQEGKNKILQIAIMRKDGTMDIDTCAE 80 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+ IS LD E+ I+ Y LEV SPG +R + G V ++ + Sbjct: 81 VSEKISAKLDEEDFIQSEYFLEVCSPGAERELKTYEQIKDAIGEFVYVKLKDPKAGMCDV 140 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G ++ E ++ + K E I ++ RL Sbjct: 141 KGTLLSCEENSILIQYMDKAVKKKAE----IEIANIALIRL 177 >gi|163857447|ref|YP_001631745.1| hypothetical protein Bpet3135 [Bordetella petrii DSM 12804] gi|226703725|sp|A9ITY3|RIMP_BORPD RecName: Full=Ribosome maturation factor rimP gi|163261175|emb|CAP43477.1| conserved hypothetical protein [Bordetella petrii] Length = 163 Score = 88.1 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 73/156 (46%), Gaps = 11/156 (7%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 D+ ++ Q + M V + LL++ +++ G + + DCE++S+ +S + +V Sbjct: 2 ADLYALTQQALAGMDVELVDVE--RAALGLLRVTIDKA-GGVRIEDCEQVSRQLSRVYEV 58 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 ENI + RLEV SPG+DRP+ +++ R+ G + ++ ++ G + + G Sbjct: 59 ENI--DYKRLEVGSPGVDRPLRTEAELRRFAGERIEIKLRQPLDGRKVFSGILSAPANDG 116 Query: 143 FFLEKE------KRGEKDMNELQIAISFDSLLSARL 172 + + + K + + + + A+L Sbjct: 117 AAADAQPAVFGLEFEAKKDDIQVLNFTLGDVERAKL 152 >gi|302522223|ref|ZP_07274565.1| conserved hypothetical protein [Streptomyces sp. SPB78] gi|318062644|ref|ZP_07981365.1| ribosome maturation protein RimP [Streptomyces sp. SA3_actG] gi|318081084|ref|ZP_07988416.1| ribosome maturation protein RimP [Streptomyces sp. SA3_actF] gi|302431118|gb|EFL02934.1| conserved hypothetical protein [Streptomyces sp. SPB78] Length = 183 Score = 88.1 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 70/152 (46%), Gaps = 9/152 (5%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++P++ ++++ + +LQI V+ D ++L C ELS+ IS +LD Sbjct: 7 ERLRELVEPLVTARDLDLEEVTVTPAGRRRVLQIVVDG-DSGVSLDTCAELSREISTVLD 65 Query: 82 VENIIEGHYR-LEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + + + LEV+SPG DRP+ ++R G +V ++ L+ +++ + Sbjct: 66 DTDAMGENEYVLEVTSPGADRPLTAHRHYVRATGRLVRFQLAEGGE----LVARLLKADD 121 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G LE + ++ + AR+ Sbjct: 122 AGLDLEVPGVKGRKPTSRRLEFP--EISKARV 151 >gi|284992352|ref|YP_003410906.1| hypothetical protein Gobs_3968 [Geodermatophilus obscurus DSM 43160] gi|284065597|gb|ADB76535.1| protein of unknown function DUF150 [Geodermatophilus obscurus DSM 43160] Length = 196 Score = 88.1 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 78/160 (48%), Gaps = 8/160 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 +A ++ ++ PV+E + ++ + + ++++ V+R D +TL D E+S+A+S Sbjct: 10 VATRMAGLVAPVVEAAGYDLEELVVTPAGRRSIVRVVVDR-DAGVTLDDVAEVSRAVSTA 68 Query: 80 LDVEN--IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y LEV+SPG+DRP+ + R G +V + G +++ +++ Sbjct: 69 LDEHDGEFGSAPYVLEVTSPGVDRPLTEPRHWRRNTGRLVTVAVGR-EGSSEQVTARVLE 127 Query: 138 TSETGFFLEKEKRGE---KDMNELQIAISFDSLLSARLIV 174 G L E +G+ K + + + L + R+ V Sbjct: 128 VDGDGVTLAVEAKGKPGAKKRPPTRRQVPWQELGAGRVQV 167 >gi|121604914|ref|YP_982243.1| hypothetical protein Pnap_2013 [Polaromonas naphthalenivorans CJ2] gi|226701127|sp|A1VNU4|RIMP_POLNA RecName: Full=Ribosome maturation factor rimP gi|120593883|gb|ABM37322.1| protein of unknown function DUF150 [Polaromonas naphthalenivorans CJ2] Length = 202 Score = 88.1 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 68/185 (36%), Gaps = 39/185 (21%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD---------DGNMTLRDCEELSQA 75 + I+ + + + V+I LL++ ++ + + DCE++++ Sbjct: 3 LQETIEQTVTGLGYELVEIERTSGG--LLRVTIDMPYLAGTAPGAEQFINAEDCEKVTRQ 60 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG--------- 126 + +L+VE + RLEVSSPGIDRP+ + DF R+ G ++ + G Sbjct: 61 LQFVLEVE--GAEYSRLEVSSPGIDRPLRSEKDFERFAGELIDITLKAPIGVAASAGSTV 118 Query: 127 --DKQKLIGKIMGTSETG------FFLEKEKRGEKDMNELQIAIS---------FDSLLS 169 ++K G + E + + I D + Sbjct: 119 SASRKKFRGTLERAEPVDGKPGWQIVWSDEPAVKPGQKISKKRIPAPLQALGFTLDEINQ 178 Query: 170 ARLIV 174 ARL Sbjct: 179 ARLAP 183 >gi|319778228|ref|YP_004129141.1| transcription termination protein NusA [Taylorella equigenitalis MCE9] gi|317108252|gb|ADU90998.1| transcription termination protein NusA [Taylorella equigenitalis MCE9] Length = 171 Score = 88.1 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 20/165 (12%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 DI + + IE + + V I + L + I ++R +T+ DCEE+S+ +S I +V Sbjct: 2 KDIFEISRGPIEGLGYELVDIERAAQGLLRVTIDIDR---GITIEDCEEVSRLLSRIYEV 58 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE-- 140 E++ + RLEV SPG DRP+ ++ DF R+ G V + + K+ G + T + Sbjct: 59 EDV--DYARLEVGSPGTDRPLKKEDDFHRFAGQRVEVKFHEAIASKKVFKGVLEVTQDIN 116 Query: 141 TGFFLEKE-------------KRGEKDMNELQIAISFDSLLSARL 172 F L + ++ + I ++ + A+L Sbjct: 117 NPFRLVLDPEIKNSKSKKTKNVESAQEQSNQIIEFNYSDVDRAKL 161 >gi|159036963|ref|YP_001536216.1| hypothetical protein Sare_1324 [Salinispora arenicola CNS-205] gi|259586188|sp|A8M743|RIMP_SALAI RecName: Full=Ribosome maturation factor rimP gi|157915798|gb|ABV97225.1| protein of unknown function DUF150 [Salinispora arenicola CNS-205] Length = 219 Score = 88.1 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 68/152 (44%), Gaps = 10/152 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 + V++PV++ + +S+ + + DG + L ++S+A+S LD Sbjct: 40 ARLHQVVEPVVQGAGYDLEDLSVSRAGRRHVVQVIVDADGGVDLDAVADVSRAVSAALDA 99 Query: 83 E-----NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD-KQKLIGKIM 136 +I+ G Y+LEVSSPG+ RP+ + R G +V + +++ G+++ Sbjct: 100 AEEVGGDIVAGEYQLEVSSPGVARPLTLPRHWRRNTGRLVRFTVRGGPEAVDRQVTGRVV 159 Query: 137 GTSETGFFLEKE----KRGEKDMNELQIAISF 164 + +E + + ++ ++ + F Sbjct: 160 EADDERVVVETDAGRTEWRHAELGPGRVQVEF 191 >gi|223038669|ref|ZP_03608962.1| conserved hypothetical protein [Campylobacter rectus RM3267] gi|222880071|gb|EEF15159.1| conserved hypothetical protein [Campylobacter rectus RM3267] Length = 142 Score = 87.8 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 39/144 (27%), Positives = 71/144 (49%), Gaps = 11/144 (7%) Query: 29 IQPVIEEMSFRSVQISLLEEKNLLL-QIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 ++ +I + + + + E + +I++ + G + L DCE++S+ +SPI DVE + Sbjct: 4 LENLISQCGVQLYDVEVANENGRAIYRIYIAKP-GGVNLDDCEKVSRLLSPIFDVEPPLS 62 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 G Y LEVSSPG++R + + S F+ G + G+ +KL GKI+ + LE Sbjct: 63 GDYVLEVSSPGLERKLEKPSHFISSVGELAKIS-AEVDGENKKLKGKILSADDDETSLES 121 Query: 148 EKRGEKDMNELQIAISFDSLLSAR 171 E + I ++ A+ Sbjct: 122 EG--------QILKIKIANIKKAK 137 >gi|124515702|gb|EAY57211.1| conserved protein of unknown function [Leptospirillum rubarum] Length = 167 Score = 87.8 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 63/153 (41%), Gaps = 9/153 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 M ++ ++ P + + L + + ++FV+ + L E +S+ IS Sbjct: 1 MRFEKELDHILTP----LGLSLHDLVLPGKNRGVFKVFVDHP-QGVGLDQLEAVSRRISD 55 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LDV + G YRLEVSSPG+DR + D L G + ++ ++ G I Sbjct: 56 LLDVLDPFPGKYRLEVSSPGLDRVLRIPEDLLLHVGKHIKVKMKEPFQGQRVFRGTIGSL 115 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 + + +L+ +I D + R Sbjct: 116 EAGVLLIS----SVEGKKQLKHSIPLDLVAEVR 144 >gi|239944686|ref|ZP_04696623.1| hypothetical protein SrosN15_27072 [Streptomyces roseosporus NRRL 15998] gi|239991149|ref|ZP_04711813.1| hypothetical protein SrosN1_27849 [Streptomyces roseosporus NRRL 11379] gi|291448147|ref|ZP_06587537.1| UPF0090 protein [Streptomyces roseosporus NRRL 15998] gi|291351094|gb|EFE77998.1| UPF0090 protein [Streptomyces roseosporus NRRL 15998] Length = 167 Score = 87.8 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 7/152 (4%) Query: 23 GDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++P++ +I + + +L++ V+ D+ + L C ELS+AIS LD Sbjct: 7 ERLRGLLEPLVSAQELDLEEIEVSRAGRRGVLRVIVDSDE-GVELDACAELSRAISQKLD 65 Query: 82 VENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + + EG Y LEVSSPG DRP+ ++R G + + +L+ +I+ E Sbjct: 66 ETDAMGEGEYVLEVSSPGADRPLTEHRHYVRATGRLARFHLTG--DGSGELVARILAVDE 123 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G LE G K ++FD + AR+ Sbjct: 124 DGLDLEV--PGVKGRKPTARRLAFDEIAKARV 153 >gi|160902005|ref|YP_001567586.1| hypothetical protein Pmob_0529 [Petrotoga mobilis SJ95] gi|189040239|sp|A9BH33|RIMP_PETMO RecName: Full=Ribosome maturation factor rimP gi|160359649|gb|ABX31263.1| protein of unknown function DUF150 [Petrotoga mobilis SJ95] Length = 157 Score = 87.8 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 37/159 (23%), Positives = 70/159 (44%), Gaps = 7/159 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELS 73 + + + I V ++ I + KN +L++ +++ DG +++ DCE S Sbjct: 1 MLTNKEIKQLIWEKADNVASKLGLEIFDILIKGSNKNKILEVVIDKADGYVSIGDCERFS 60 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 +A P LD ++ + Y L VSSPG+DR + K+D+ R+ G + + +IG Sbjct: 61 KAFDPWLDEIDLFDKSYELVVSSPGLDRKLRGKADYERFKGKLAKFILKGKETKHPVVIG 120 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 I E + ++ G+ I + + A L Sbjct: 121 YIDEILEDQIKITEKDSGKL------FNIDLNEIDKANL 153 >gi|313906215|ref|ZP_07839561.1| protein of unknown function DUF150 [Eubacterium cellulosolvens 6] gi|313468945|gb|EFR64301.1| protein of unknown function DUF150 [Eubacterium cellulosolvens 6] Length = 157 Score = 87.8 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 36 MSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEV 94 M++ V + ++E L+ + ++ +G +T+ DCE +S+A LD ++IE Y LEV Sbjct: 23 MNYEFVDLEYVKEAGTWYLRAYADK-EGGITVDDCEIISRAFEEKLDAADLIEEAYILEV 81 Query: 95 SSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEK 153 SSPG+ RP+ ++ D++R G V +++ G + + + ++ ++ Sbjct: 82 SSPGLGRPLKKERDYVRAMGQRVEIRTYKIINHEKEFTGVLQAYDDQSVTIVSDEDEQE 140 >gi|256544695|ref|ZP_05472067.1| hypothetical protein HMPREF0078_0324 [Anaerococcus vaginalis ATCC 51170] gi|256399584|gb|EEU13189.1| hypothetical protein HMPREF0078_0324 [Anaerococcus vaginalis ATCC 51170] Length = 152 Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 8/149 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M L + ++ I + + V I + KN +L+ F+ + DG +T+ DCE+ S +S Sbjct: 7 MDLISKLKENLESDINGLGYELVDIEFVNEGKNKILRFFIYK-DGGITIDDCEKTSNFLS 65 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD ++I+ Y LEVSSP + RP+ D R ++ ++ +K IGKI Sbjct: 66 ERLDEIDLIKSFYYLEVSSPDLSRPLKTDRDLERNKDELLEIKLKNG----EKFIGKIKE 121 Query: 138 TSETGF--FLEKEKRGEKDMNELQIAISF 164 E LE E++ + I I Sbjct: 122 IKENSLIFTLENEQKEIEKSEIKTIKIEI 150 >gi|271963646|ref|YP_003337842.1| hypothetical protein Sros_2114 [Streptosporangium roseum DSM 43021] gi|270506821|gb|ACZ85099.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021] Length = 166 Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 15/154 (9%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++PV+ +++ K LL++ V+R DG ++L D E+S A+S LD Sbjct: 8 DRLIKLLEPVVGAEGLDLEDVTVTPAGKRRLLRVVVDR-DGGVSLDDVAEVSLAVSATLD 66 Query: 82 VENIIE-GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 ++ + Y LEVSSPG+DRP+ + R +V ++ + + G+I+ T E Sbjct: 67 ADDAMGATPYVLEVSSPGVDRPLTEPRHWRRAVKRLVKADLRDGT----SVEGRIVATDE 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 TG L+ I ++ L R+ V Sbjct: 123 TGVELDIAGAPR--------RIDYEDLTRGRVQV 148 >gi|255321999|ref|ZP_05363149.1| conserved hypothetical protein [Campylobacter showae RM3277] gi|255301103|gb|EET80370.1| conserved hypothetical protein [Campylobacter showae RM3277] Length = 142 Score = 87.0 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 38/144 (26%), Positives = 70/144 (48%), Gaps = 11/144 (7%) Query: 29 IQPVIEEMSFRSVQISLLEEKNLLL-QIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 ++ +I + + + + E + +I++ + G + L DCE++S+ +SPI DVE + Sbjct: 4 LENLISQCGVQLYDVEVANENGRAIYRIYIAKP-GGVNLDDCEKVSRILSPIFDVEPPLT 62 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 G Y LEVSSPG++R + + S F+ G + G+ +KL GKI+ + E Sbjct: 63 GDYVLEVSSPGLERKLEKPSHFILSIGELAKIS-AEVDGENKKLKGKILSADDEEISFES 121 Query: 148 EKRGEKDMNELQIAISFDSLLSAR 171 E + I ++ A+ Sbjct: 122 EG--------QILKIKIANIKKAK 137 >gi|212704655|ref|ZP_03312783.1| hypothetical protein DESPIG_02718 [Desulfovibrio piger ATCC 29098] gi|212671889|gb|EEB32372.1| hypothetical protein DESPIG_02718 [Desulfovibrio piger ATCC 29098] Length = 244 Score = 87.0 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 26/193 (13%), Positives = 67/193 (34%), Gaps = 38/193 (19%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD--------------- 60 + L ++ + P+++ + + + +++FV+ Sbjct: 1 MSENSLKETVTRLATPLVQAQGLEIWGVEIAQAGRTTVRVFVDLPLEVKQAQAALSADSD 60 Query: 61 -------------DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKS 107 + ++ CEE+S+ + L+VE++IE Y LEVS+PG R Sbjct: 61 PADNLEDSADIMAARSASIDQCEEISRQLGLALEVEDLIEQAYVLEVSTPGFSRLFFSLD 120 Query: 108 DFLRWNGHVVACEI------VLSSGDKQKLIGKIMGTSETGFFL----EKEKRGEKDMNE 157 + G +V + + ++ G + +++ + + Sbjct: 121 QMRSYVGDMVELRMVSAYAPENAPAARRAWRGVLREVTDSAVRVAPASVSAEGDICPEAM 180 Query: 158 LQIAISFDSLLSA 170 ++ + +D + A Sbjct: 181 DEVLVPWDMVRRA 193 >gi|34558305|ref|NP_908120.1| hypothetical protein WS2018 [Wolinella succinogenes DSM 1740] gi|51316745|sp|Q7MQU0|RIMP_WOLSU RecName: Full=Ribosome maturation factor rimP gi|34484024|emb|CAE11020.1| conserved hypothetical protein [Wolinella succinogenes] Length = 142 Score = 87.0 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 39/146 (26%), Positives = 71/146 (48%), Gaps = 17/146 (11%) Query: 26 SSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 I+ +++ + LL+E +L++++ + + ++L DC +S ISP+LDVE+ Sbjct: 7 QEKIEKLVQSCGCNLYDLLLLKENERSILRLYITK-EVGVSLDDCAMVSDLISPLLDVED 65 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 + G Y LEVSSPGI+RP+ R + + G + + K ++ G+I ET Sbjct: 66 PLAGEYFLEVSSPGIERPLKRPAHYQHALGELARIKFAD----KNEIEGEIEAADETSVK 121 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSA 170 L+ E+ I + + A Sbjct: 122 LKGEEP-----------IPYSLIKKA 136 >gi|302542144|ref|ZP_07294486.1| conserved hypothetical protein [Streptomyces hygroscopicus ATCC 53653] gi|302459762|gb|EFL22855.1| conserved hypothetical protein [Streptomyces himastatinicus ATCC 53653] Length = 168 Score = 86.6 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 40/152 (26%), Positives = 73/152 (48%), Gaps = 9/152 (5%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++P++ ++ + K +L+I V+ DD + L C ELS+AIS LD Sbjct: 7 ERLRGLLEPLVSARDLDLEEVEVTPAGKRRVLRIVVDSDD-GVQLDTCAELSRAISQALD 65 Query: 82 VENIIEG-HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + + Y LEV+SPG +RP++ + + R G ++ ++V LI +I+ + Sbjct: 66 ESDAMGQTPYVLEVTSPGAERPLIEQRHYRRATGRLMKAQLVEGGE----LIARIIAVDD 121 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G LE G K ++F + AR+ Sbjct: 122 EGLDLEV--PGVKGRKPTTRRLAFKEISKARV 151 >gi|255994862|ref|ZP_05427997.1| conserved hypothetical protein [Eubacterium saphenum ATCC 49989] gi|255993575|gb|EEU03664.1| conserved hypothetical protein [Eubacterium saphenum ATCC 49989] Length = 187 Score = 86.6 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 75/192 (39%), Gaps = 43/192 (22%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVER---------------- 59 + + + + E+S + K+ +L+++++R Sbjct: 1 MKKEIENAVEEACKAKLAELSLEIYSVEYKREGKDWILRVYIDRMFCEDAVGIGYDKQAG 60 Query: 60 ------------------DDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDR 101 + + + +C +S+AIS LD +II+ +Y LEVS+PGIDR Sbjct: 61 MNTDARCQKAQGIKADSKREKPIGIDECTAISEAISEYLDKNDIIDNNYYLEVSTPGIDR 120 Query: 102 PMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIA 161 + + DF+R+ G V + +++ G ++ ++ G +E ++ + N Sbjct: 121 ELKKDIDFIRFKGRSVDISLYKRIDGQKEYRGTLIEKNDEGIAVEVDESTKVFSN----- 175 Query: 162 ISFDSLLSARLI 173 + + L Sbjct: 176 ---NDVAKVNLA 184 >gi|328885405|emb|CCA58644.1| conserved hypothetical protein [Streptomyces venezuelae ATCC 10712] Length = 168 Score = 86.6 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 43/152 (28%), Positives = 77/152 (50%), Gaps = 6/152 (3%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++P++ + +I + + LL+I V+ D+ + L C ELS+AIS LD Sbjct: 7 DRLRGLVEPLVAAKNLDLEEIEVSRAGRRGLLRIVVDSDE-GVELDACAELSRAISEKLD 65 Query: 82 VENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + + EG Y LEVSSPG DRP+ + ++R G +V ++ G ++L+ +I+ E Sbjct: 66 ETDAMGEGEYVLEVSSPGADRPLTQHRHYVRATGRLVKLQLSS-DGAAEELVARIVAVDE 124 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G LE + ++ F + AR+ Sbjct: 125 DGLDLEVPGVKGRKPTARRVE--FADVAKARV 154 >gi|313836821|gb|EFS74535.1| conserved hypothetical protein [Propionibacterium acnes HL037PA2] gi|314929770|gb|EFS93601.1| conserved hypothetical protein [Propionibacterium acnes HL044PA1] gi|314972199|gb|EFT16296.1| conserved hypothetical protein [Propionibacterium acnes HL037PA3] gi|328907627|gb|EGG27391.1| hypothetical protein PA08_0657 [Propionibacterium sp. P08] Length = 178 Score = 86.6 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 38/177 (21%), Positives = 68/177 (38%), Gaps = 15/177 (8%) Query: 22 AGDISSVIQPVIEEMSFRS--VQISLLEEKNLLLQIFVERDD---GNMTLRDCEELSQAI 76 A ++S+++P + + V + + + L+++ V+ D +L + E + I Sbjct: 3 AERLTSLLEPAVSRLGLELDCVDV-VPAGRRRLVRVTVDGDGPDGHGPSLDEISEATAEI 61 Query: 77 SPILDVENIIEGH-YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK---LI 132 S LD + + Y LEVSS G+ P+ + + R GH+V + S + Sbjct: 62 SRCLDDSDAMGESPYTLEVSSRGVSTPLTQPRHYRRNIGHLVRFTL-NPSEGQTSGEAFD 120 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNE--LQIAISFDSLLSARLIVTDELLRASLNNYG 187 G+I E LE E K + + A +V EL R Sbjct: 121 GRITEAGEEVVTLEVEAGNSKPHKPVYTTREVQLADVAKA--VVQVELNRRDAQASK 175 >gi|256396851|ref|YP_003118415.1| hypothetical protein Caci_7750 [Catenulispora acidiphila DSM 44928] gi|256363077|gb|ACU76574.1| protein of unknown function DUF150 [Catenulispora acidiphila DSM 44928] Length = 203 Score = 86.6 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 66/157 (42%), Gaps = 10/157 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 G A + ++++PV+ + + + + V D ++L ++++ +S + Sbjct: 8 GPADRLQALLEPVVAAAGYDLESVRVSQVARRRRVEVVVDGDDGVSLDAVSDITRVVSDV 67 Query: 80 LDVEN----IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + E Y LEV SPG DRP+ + R G +V + + G++ Sbjct: 68 LDAPEGVAVMGEQPYVLEVGSPGTDRPLTLPKHWRRAKGRLVRALLRNGGD----VTGRV 123 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + + G LE + + E + + + AR+ Sbjct: 124 LDSDDEGVLLEVPGKKKGQTEER--RLEYSEVAKARV 158 >gi|218960601|ref|YP_001740376.1| hypothetical protein CLOAM0262 [Candidatus Cloacamonas acidaminovorans] gi|167729258|emb|CAO80169.1| conserved hypothetical protein [Candidatus Cloacamonas acidaminovorans] Length = 156 Score = 86.2 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 70/153 (45%), Gaps = 11/153 (7%) Query: 23 GDISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + + + + +EM I + K ++ +++ + G +TL +C S A+ L+ Sbjct: 6 AQVEEIARKICQEMHLAVYDIEEKMSGKGRIITVYLTKI-GGVTLDECAAFSNALGKELE 64 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + ++I Y LEVSSPG++RP+ KS ++ VA + +++ ++G + ++ Sbjct: 65 IFDLIPERYFLEVSSPGLERPLKLKSHYVSAINEKVAVQFQAG-EERKSIMGTLTEVNQD 123 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ I F S++ A+ + Sbjct: 124 TIVIDDRGSVT--------EIPFKSIIRAKTVF 148 >gi|182435607|ref|YP_001823326.1| hypothetical protein SGR_1814 [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776241|ref|ZP_08235506.1| Ribosome maturation factor rimP [Streptomyces cf. griseus XylebKG-1] gi|226695980|sp|B1VYN8|RIMP_STRGG RecName: Full=Ribosome maturation factor rimP gi|178464123|dbj|BAG18643.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326656574|gb|EGE41420.1| Ribosome maturation factor rimP [Streptomyces cf. griseus XylebKG-1] Length = 167 Score = 86.2 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 42/152 (27%), Positives = 74/152 (48%), Gaps = 7/152 (4%) Query: 23 GDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++P++ +I + + +L+I V+ ++ + L C ELS+AIS LD Sbjct: 7 ERLRGLLEPLVSAQQLDLEEIEVSRAGRRGVLRIIVDSEE-GVELDACAELSRAISEKLD 65 Query: 82 VENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + + EG Y LEVSSPG DRP+ ++R G + + + +L+ +I+ E Sbjct: 66 ETDAMGEGEYVLEVSSPGADRPLTEHRHYVRATGRLARFHL--AGDGSGELVARILAVDE 123 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G LE G K ++FD + AR+ Sbjct: 124 EGLDLEV--PGVKGRKPTARRLAFDEIARARV 153 >gi|108804246|ref|YP_644183.1| hypothetical protein Rxyl_1409 [Rubrobacter xylanophilus DSM 9941] gi|122381798|sp|Q1AW57|RIMP_RUBXD RecName: Full=Ribosome maturation factor rimP gi|108765489|gb|ABG04371.1| protein of unknown function DUF150 [Rubrobacter xylanophilus DSM 9941] Length = 152 Score = 86.2 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 12/150 (8%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 +S ++ + E V+ LL + V+R+ G + C + ++P L+ Sbjct: 9 DRLSEAVERALPE-GTELVEARFSRG--PLLTLLVDREGGPVDHEFCARIISIVAPALEE 65 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E +EVSSPGI+RP+ R S F R+ G V + ++ G I ++ G Sbjct: 66 E---GYSGMIEVSSPGIERPLTRPSHFRRFIGRRVRVRVGEPVDGRRNFTGVIERVADAG 122 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARL 172 F L + GE ++ + F S+ A L Sbjct: 123 FVLRLSEDGE------EVELPFGSVTRAHL 146 >gi|86605174|ref|YP_473937.1| hypothetical protein CYA_0456 [Synechococcus sp. JA-3-3Ab] gi|123507667|sp|Q2JX22|RIMP_SYNJA RecName: Full=Ribosome maturation factor rimP gi|86553716|gb|ABC98674.1| conserved hypothetical protein [Synechococcus sp. JA-3-3Ab] Length = 157 Score = 86.2 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 71/157 (45%), Gaps = 13/157 (8%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVE--RDDGNMTLRDCEELSQAIS 77 L + S+ +P+ + + VQ+ + +L++ + + + DCE +SQA+ Sbjct: 5 LIPQLESLARPLAARLGYELVQMVFHTNQYPPVLRVDIRPLDPEQETSHADCEAMSQALE 64 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD ++I GHY LEVSSPGI ++ DF+ + G V + K G ++G Sbjct: 65 VELDRVDLIPGHYVLEVSSPGISNLLISDRDFVVFKGFAVEVTVDPPYKGKAVWSGHLLG 124 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E L + R ++ + S+ R+++ Sbjct: 125 RDEEKVALSLKGR--------RVQLPRASVQ--RVVL 151 >gi|56807386|ref|ZP_00365365.1| COG0779: Uncharacterized protein conserved in bacteria [Streptococcus pyogenes M49 591] Length = 162 Score = 86.2 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 67/162 (41%), Gaps = 9/162 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ + P I+ + V + + + +L I V++ +G +T+ D +L+ Sbjct: 5 IANTSIIDIVTKTVTPEIKA-PYELVDVEYDKMGSDYILSILVDK-EGGITVEDTSDLTN 62 Query: 75 AISPILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 ISP+LD + Y LEVSSPG++RP+ G + + + + Sbjct: 63 IISPLLDTIDPDPFPNQYMLEVSSPGLERPLKTADSLKAAVGSYINVSLYQAIDKVKVFQ 122 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G ++ ++ + + I + ++ R+ V Sbjct: 123 GDLLAFDGETLTIDYLDK----TRHKIVNIPYQAVAKVRMAV 160 >gi|282861438|ref|ZP_06270503.1| protein of unknown function DUF150 [Streptomyces sp. ACTE] gi|282564096|gb|EFB69633.1| protein of unknown function DUF150 [Streptomyces sp. ACTE] Length = 165 Score = 86.2 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 7/151 (4%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 + +++P++ +I + + + D + L C ELS+ IS LD Sbjct: 7 DRLRGLLEPLVSAKELDLEEIEVSRAGRRRVLRVIVDSDDGVELDTCAELSRTISETLDA 66 Query: 83 ENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + + EG Y LEVSSPG DRP+ ++R G + + L+ +I+G + Sbjct: 67 TDAMGEGEYVLEVSSPGADRPLTEHRHYVRATGRLAKLNLADGGE----LVARILGVDDE 122 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G LE + ++ +FD + AR+ Sbjct: 123 GLDLEVPGVKGRKPTARRV--AFDEIAKARV 151 >gi|269127539|ref|YP_003300909.1| hypothetical protein Tcur_3333 [Thermomonospora curvata DSM 43183] gi|268312497|gb|ACY98871.1| protein of unknown function DUF150 [Thermomonospora curvata DSM 43183] Length = 205 Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 65/149 (43%), Gaps = 9/149 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + +++ ++ P+ ++ + L V DG +TL D LSQA+S L Sbjct: 35 VQAELTRLVGPLAAAQGLDLEELDVKPAGRRRLVRIVVDADGGVTLEDTATLSQAVSAAL 94 Query: 81 DVENIIEGH-YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 D +++ Y LEV+SPG+DRP+ + R G +V + + G+++ Sbjct: 95 DDTDVMGEAPYVLEVTSPGVDRPLTEPRHWRRATGRLVRAALADGGQ----VEGRVVAAD 150 Query: 140 ETGFFLEKEKR----GEKDMNELQIAISF 164 E LE R G ++ ++ + F Sbjct: 151 EEAVVLEVAGRRRRFGHGELGRGRVQVEF 179 >gi|261416679|ref|YP_003250362.1| protein of unknown function DUF150 [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373135|gb|ACX75880.1| protein of unknown function DUF150 [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326580|gb|ADL25781.1| conserved hypothetical protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 150 Score = 85.8 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 13/155 (8%) Query: 22 AGDISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++S+I + S V+ K L+IF+++ + +T+ DC +S +S L Sbjct: 4 QEKLNSLIADACKSASVTLVEADVFRAGKRKTLRIFIDKPE-GVTIDDCTNVSHFLSDAL 62 Query: 81 DVE-NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 D++ +IEG Y LEVSSPGIDRP+ +DF R G ++ + + G+++ Sbjct: 63 DLDPELIEGAYTLEVSSPGIDRPLKSMADFERNKGRLLRVTRSTG----KPVTGELLNAD 118 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E L+ + +I I +LSA++ V Sbjct: 119 EENLTLKLKGNA------GEIVIPRSEVLSAKVEV 147 >gi|317402908|gb|EFV83449.1| hypothetical protein HMPREF0005_01713 [Achromobacter xylosoxidans C54] Length = 175 Score = 85.8 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 73/160 (45%), Gaps = 15/160 (9%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 D+ ++ + + M V + LL++ ++R G + + DCE++S+ +S + +V Sbjct: 10 ADLFALTEEALAGMDVELVDVERAALG--LLRVTIDRV-GGVRIEDCEQVSRQLSRVYEV 66 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 ENI + RLEV SPGIDRP+ +++F R+ G + ++ + ++ G + + Sbjct: 67 ENI--DYKRLEVGSPGIDRPLRNEAEFRRFAGERIEIKLREALDGRKVFSGTLTVPEDAP 124 Query: 143 F----------FLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + K + + D + A+L Sbjct: 125 AASDAVAGMHKTVFGLEFEAKKNEIQVLNFTVDDIERAKL 164 >gi|319762632|ref|YP_004126569.1| hypothetical protein Alide_1938 [Alicycliphilus denitrificans BC] gi|330824722|ref|YP_004388025.1| ribosome maturation factor rimP [Alicycliphilus denitrificans K601] gi|317117193|gb|ADU99681.1| protein of unknown function DUF150 [Alicycliphilus denitrificans BC] gi|329310094|gb|AEB84509.1| Ribosome maturation factor rimP [Alicycliphilus denitrificans K601] Length = 196 Score = 85.8 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 75/200 (37%), Gaps = 42/200 (21%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVE-------------RDDGNMTLRDCEE 71 + +++ + + + V+I LL+I ++ +T+ DCE+ Sbjct: 3 LQQIVEQTVAGLGYDLVEIERSAGG--LLRITIDLMWAPPADGGEVQATGQFVTVEDCEK 60 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS------ 125 +++ + L+VE + + RLEVSSPGIDR + + DF R+ G V+ + Sbjct: 61 VTRQLQFALEVEGV--DYKRLEVSSPGIDRLLRNEQDFTRFEGEVIDITLKEPLGAAAGG 118 Query: 126 ---GDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQ-----------IAISFDSLLSAR 171 +++K G + G+ + + + + D L AR Sbjct: 119 QVAANRKKFRGTLERVPAGGWQIVWSDEPPVKPGQRVSKKRVPAPLQALGFTLDELREAR 178 Query: 172 LIVTDELLRASLNNYGSYAG 191 L + G+ G Sbjct: 179 LAPIVD-----FKGRGARPG 193 >gi|57505608|ref|ZP_00371535.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195] gi|57016155|gb|EAL52942.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195] Length = 138 Score = 85.8 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 40/144 (27%), Positives = 69/144 (47%), Gaps = 14/144 (9%) Query: 29 IQPVIEEMSFRSVQISLLEEKNLLL-QIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 ++ + EE L+ E + +I++ + +G ++L DC LS+ +SPI DVE + Sbjct: 3 LKALCEEAGVELYDSELVSENGKKIYRIYIMK-EGGVSLEDCARLSEILSPIFDVEPPVN 61 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 G Y LEVSS G++R + F + G ++ K+K+ GK++ FL+ Sbjct: 62 GEYFLEVSSAGLERKLSTLEHFEKSVGEMLKITTSE----KEKIQGKLLKVEGENIFLQD 117 Query: 148 EKRGEKDMNELQIAISFDSLLSAR 171 EK +I I F + A+ Sbjct: 118 EK--------AEICIEFSQVKKAK 133 >gi|220903348|ref|YP_002478660.1| hypothetical protein Ddes_0062 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|254799886|sp|B8J1Y7|RIMP_DESDA RecName: Full=Ribosome maturation factor rimP gi|219867647|gb|ACL47982.1| protein of unknown function DUF150 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 258 Score = 85.8 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 35/207 (16%), Positives = 71/207 (34%), Gaps = 52/207 (25%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD--------------- 60 D L I + QPV+ + + ++++FV+ Sbjct: 1 MTDNALRETIIRLAQPVVHTLGLVIWGVETARAGRTIVRLFVDVPTIPQRPGMPEGSEEP 60 Query: 61 ------------------------DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSS 96 + T+ CEE+S+ ++ L+VE+ I Y LEVS+ Sbjct: 61 SSAITAPAPAHDPQESSGAEAPAAPTSATIEQCEEISRHLALALEVEDSIADAYVLEVST 120 Query: 97 PGIDRPMVRKSDFLRWNGHVVACEIVLSS---------GDKQKLIGKIMGTSETGFFL-- 145 PG+ R + + G VV + G ++ G ++ + F L Sbjct: 121 PGLSRLFFSLEQMIPYVGDVVEARLHTPVASTDPAAHGGPRRVWRGTLVAVEDDAFVLAP 180 Query: 146 --EKEKRGEKDMNELQIAISFDSLLSA 170 + +D N+ + + ++++ A Sbjct: 181 VTVSPEGEVEDENQPPVRLPWEAVRRA 207 >gi|307067173|ref|YP_003876139.1| hypothetical protein SPAP_0544 [Streptococcus pneumoniae AP200] gi|306408710|gb|ADM84137.1| Uncharacterized protein conserved in bacteria [Streptococcus pneumoniae AP200] Length = 134 Score = 85.8 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 63/136 (46%), Gaps = 8/136 (5%) Query: 42 QISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD--VENIIEGHYRLEVSSPG 98 I + +++L IFV++ + +TL D +L++ ISP+LD + Y LE++SPG Sbjct: 2 DIEYGKIGSDMILSIFVDKPE-GITLNDTADLTEMISPVLDTIKPDPFPEQYFLEITSPG 60 Query: 99 IDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNEL 158 ++RP+ K G + + + ++ G ++ E +E + K Sbjct: 61 LERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEEDELTMEYMDKTRKK---- 116 Query: 159 QIAISFDSLLSARLIV 174 + I + + ARL V Sbjct: 117 TVQIPYSLVSKARLAV 132 >gi|295836232|ref|ZP_06823165.1| conserved hypothetical protein [Streptomyces sp. SPB74] gi|295825917|gb|EFG64551.1| conserved hypothetical protein [Streptomyces sp. SPB74] Length = 183 Score = 85.4 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 70/152 (46%), Gaps = 9/152 (5%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++P++ +I++ + +LQI V+ D ++L C ELS+ IS +LD Sbjct: 7 ERLREILEPLVTARDLDLEEITVTPAGRRRVLQIVVDG-DTGVSLDTCAELSREISTVLD 65 Query: 82 VENIIEGHYR-LEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + + + LEV+SPG DRP+ ++R G +V ++ L+ +++ + Sbjct: 66 DTDAMGENEYVLEVTSPGADRPLSAHRHYVRATGRLVRFQLAEGGE----LVARLLKADD 121 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G LE + ++ + AR+ Sbjct: 122 AGLDLEVPGVKGRKPTSRRLEFP--EISKARV 151 >gi|152990172|ref|YP_001355894.1| hypothetical protein NIS_0423 [Nitratiruptor sp. SB155-2] gi|167012920|sp|A6Q228|RIMP_NITSB RecName: Full=Ribosome maturation factor rimP gi|151422033|dbj|BAF69537.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2] Length = 142 Score = 85.4 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 65/157 (41%), Gaps = 18/157 (11%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLL-QIFVERDDGNMTLRDCEELSQAIS 77 M L +I + +E + I + ++ + ++ + + + L+ C E+S IS Sbjct: 1 MSLEQEIKQI----VESCGAKLYDIETVSDRGKTIYRVTITAPE-GVDLQKCVEISNLIS 55 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 P+LDV + G Y LEVSSPG++R + + S F G V D + + G + Sbjct: 56 PLLDVHPPVSGDYNLEVSSPGVERKLKKPSHFEHSVGEKVRVT----KNDGETIEGVLSD 111 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + L+ I I D + A+ I Sbjct: 112 FRDHTLTLQ--------TKNGPIEIPLDQITYAKTIF 140 >gi|119963357|ref|YP_947325.1| uncharacterized Bcr YhbC family protein [Arthrobacter aurescens TC1] gi|259585697|sp|A1R513|RIMP_ARTAT RecName: Full=Ribosome maturation factor rimP gi|119950216|gb|ABM09127.1| putative Uncharacterized BCR YhbC family protein [Arthrobacter aurescens TC1] Length = 203 Score = 85.4 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 69/159 (43%), Gaps = 12/159 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDG---NMTLRDCEELSQAIS 77 + ++++P + +S+ + + + + V+ ++L ++S+ +S Sbjct: 26 ESRLKALLEPAVLASRLYLEDVSIHVAGSHRTVHVVVDLPQEETGGVSLDAIADVSRGLS 85 Query: 78 PILDVENIIEG-HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 ILD + +G Y LEVSSPG+ RP+ + R G +V ++ L+G+I Sbjct: 86 DILDNDPHDDGRPYDLEVSSPGVSRPLTEPRHWHRARGRMVRVNVIQGDN----LLGRIA 141 Query: 137 GTSETGFFLEKE---KRGEKDMNELQIAISFDSLLSARL 172 + L E K+G K I I FD + ++ Sbjct: 142 SVGDDAVTLIPEHEVKKGMKPKQGEPITIPFDRIRQGKV 180 >gi|268316866|ref|YP_003290585.1| hypothetical protein Rmar_1307 [Rhodothermus marinus DSM 4252] gi|262334400|gb|ACY48197.1| protein of unknown function DUF150 [Rhodothermus marinus DSM 4252] Length = 160 Score = 85.4 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 78/158 (49%), Gaps = 10/158 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAIS 77 L I + ++ V++ +F + + + + +++IF++ D +LRD E+LS+ I Sbjct: 9 PALIEQIRARVEEVLQGTTFFLIDVVVRGRRGAHVVEIFIDG-DRGPSLRDLEQLSREIG 67 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK-QKLIGKIM 136 +LD ++++ G Y L VSSPG+DRP+V + + G + ++V + ++L G + Sbjct: 68 FLLDSDDLLPGPYTLNVSSPGVDRPLVHPRQYPKHVGRELEVKLVAVADAPAERLRGTLQ 127 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L ++ + ++ + SAR+ + Sbjct: 128 RADAEAIELRLPDGSQR-------RLRYEEIQSARVCL 158 >gi|293604236|ref|ZP_06686644.1| protein of hypothetical function DUF150 [Achromobacter piechaudii ATCC 43553] gi|292817461|gb|EFF76534.1| protein of hypothetical function DUF150 [Achromobacter piechaudii ATCC 43553] Length = 174 Score = 85.4 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 71/159 (44%), Gaps = 14/159 (8%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 D+ ++ + + M V + LL++ ++R G + + DCE++S+ +S + +V Sbjct: 10 ADLFALTEEALAGMDVELVDVERAALG--LLRVTIDRV-GGVRIEDCEQVSRQLSRVFEV 66 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 EN+ + RLEV SPGIDRP+ +++F R+ G + ++ + ++ G + + Sbjct: 67 ENV--DYKRLEVGSPGIDRPLRNEAEFRRFAGERIEIKLREALDGRKVFSGTLTVPEDAA 124 Query: 143 FFLEKEK---------RGEKDMNELQIAISFDSLLSARL 172 K + + + + A+L Sbjct: 125 ASDADAGMHRTVFGLEFEAKKNEIQVLNFTVEDIERAKL 163 >gi|116490509|ref|YP_810053.1| hypothetical protein OEOE_0429 [Oenococcus oeni PSU-1] gi|118587524|ref|ZP_01544948.1| conserved hypothetical protein [Oenococcus oeni ATCC BAA-1163] gi|290889909|ref|ZP_06552996.1| hypothetical protein AWRIB429_0386 [Oenococcus oeni AWRIB429] gi|122277304|sp|Q04GN4|RIMP_OENOB RecName: Full=Ribosome maturation factor rimP gi|116091234|gb|ABJ56388.1| hypothetical protein OEOE_0429 [Oenococcus oeni PSU-1] gi|118431975|gb|EAV38717.1| conserved hypothetical protein [Oenococcus oeni ATCC BAA-1163] gi|290480519|gb|EFD89156.1| hypothetical protein AWRIB429_0386 [Oenococcus oeni AWRIB429] Length = 156 Score = 85.1 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 52/153 (33%), Gaps = 10/153 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN-MTLRDCEELSQAISPILD 81 I IQP++ E +S +L I ++ D + + E++ IS LD Sbjct: 7 DTIKEKIQPILSEKHLLLWDLSFFGGSPAVLTILIDGQDHQAIRMNQISEVTSLISDALD 66 Query: 82 --VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 + Y L++SSPGIDR + G + + + G + S Sbjct: 67 KVEPDPFPDRYNLDISSPGIDRSIKTDEHLDWALGQPIKLNLFEKIDGSKSAEGILKSFS 126 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + LE K+ + + L Sbjct: 127 DLEISLEVSPAEVKN-------FPREKISKISL 152 >gi|303233384|ref|ZP_07320053.1| conserved hypothetical protein [Atopobium vaginae PB189-T1-4] gi|302480513|gb|EFL43604.1| conserved hypothetical protein [Atopobium vaginae PB189-T1-4] Length = 157 Score = 85.1 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 66/159 (41%), Gaps = 12/159 (7%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDD---GNMTLRDCEE 71 L + S ++ V + + ++++ ++ D ++L + + Sbjct: 1 MTPEALRTALLSALEQAAPAHGIDIVDVEIAGSSRAPIIRLRIDNADESLPTISLDEVAQ 60 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 + I+ LD + IEG Y LEVSSPG+ RP+ + DF R+ V + + +++ Sbjct: 61 QHEWINATLDEMDPIEGSYTLEVSSPGLARPLRKHHDFERFAHETVQLQTNN-TEGRKRF 119 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 G++ G ++ ++ + ++++S Sbjct: 120 SGELCG-------IDDNDVVTVVVDGEDMQFPRNTIVSC 151 >gi|319957625|ref|YP_004168888.1| hypothetical protein Nitsa_1895 [Nitratifractor salsuginis DSM 16511] gi|319420029|gb|ADV47139.1| protein of unknown function DUF150 [Nitratifractor salsuginis DSM 16511] Length = 146 Score = 85.1 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 66/158 (41%), Gaps = 18/158 (11%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLL-QIFVERDDGNMTLRDCEELSQAIS 77 M L I+ +++ + E + + ++++ + DG + L C ++S +S Sbjct: 1 MNLEDQIAKIVR----SHGAEFYDTETVNENDQTIYRVYITK-DGGVDLDTCADISNDLS 55 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 P+LDV + G Y LEVSSPGI+R + + F G V + +KL G + Sbjct: 56 PLLDVHPPVGGKYFLEVSSPGIERTLKKPRHFQSAVGERVKLK----IAGGEKLRGILES 111 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 E G L E + S+ +L AR Sbjct: 112 ADEEGIILR--------NKEGEHRYSYPQILKARTYFD 141 >gi|297571192|ref|YP_003696966.1| hypothetical protein Arch_0611 [Arcanobacterium haemolyticum DSM 20595] gi|296931539|gb|ADH92347.1| protein of unknown function DUF150 [Arcanobacterium haemolyticum DSM 20595] Length = 156 Score = 85.1 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 76/168 (45%), Gaps = 19/168 (11%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDG--NMTLRDCEELS 73 ++ I+ ++ PV++E + ++ K+ ++++ V+ G + ++S Sbjct: 1 MVDNVSAQIAQLLDPVVQESGLWLETVRVVGAGKHTVVRVTVDLPSGPGGVDSTQLMDVS 60 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 +A+S +LD ++ I+G Y LEVS+PG R + + F R G VA ++ + K Sbjct: 61 RAVSVVLDEKDPIKGAYTLEVSTPGATRELSEERHFSRAIGRKVAFQLSDDT----KFTE 116 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRA 181 +I+ ++ L I+ + A +++ EL +A Sbjct: 117 RIVDVADGVITL----------AGQPGTIAVVDVARAHVVL--ELNKA 152 >gi|319793510|ref|YP_004155150.1| hypothetical protein Varpa_2847 [Variovorax paradoxus EPS] gi|315595973|gb|ADU37039.1| protein of unknown function DUF150 [Variovorax paradoxus EPS] Length = 215 Score = 85.1 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 73/191 (38%), Gaps = 45/191 (23%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD--------------DGNMTLRDCE 70 + +++ + + + V+I LL++ ++ + +T+ DCE Sbjct: 3 LQQIVEQTVAGLGYDLVEIERSAGG--LLRVTIDLPWTAPTSEAVAAGVPEPFVTVEDCE 60 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG---- 126 ++++ + L+V+ + + RLEVSSPGIDRP+ + DF R+ G V+ + G Sbjct: 61 KVTRQLQFALEVDGV--DYKRLEVSSPGIDRPLRNEQDFERFVGSVIDLTLKAPMGAAAA 118 Query: 127 -----DKQKLIGKIMGTSETG-------FFLEKEKRGEKDMNELQ-----------IAIS 163 ++K G + + + + + + + Sbjct: 119 GQVSATRKKFRGTLERAEKAEGADAAPGWQIVWSDAPKPKPGQKVSKKRAPAPLHALGFV 178 Query: 164 FDSLLSARLIV 174 D L ARL Sbjct: 179 LDELRDARLAP 189 >gi|223984471|ref|ZP_03634604.1| hypothetical protein HOLDEFILI_01898 [Holdemania filiformis DSM 12042] gi|223963542|gb|EEF67921.1| hypothetical protein HOLDEFILI_01898 [Holdemania filiformis DSM 12042] Length = 156 Score = 85.1 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 6/154 (3%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 +I ++I PV++ + + + + EK + +LQI V R DG+M + C +S+ IS LD Sbjct: 5 ENIKTLILPVLDSLGIQLYDLKWVNEKKSRILQIAVMRADGSMDIDTCALVSEKISEALD 64 Query: 82 -VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 ++ I Y LEV SPG +R + + G V + ++ G ++ +E Sbjct: 65 AHDDWISFEYFLEVCSPGAERELRNAGEIRGALGKHVCVRLKSPVKSMMEITGDLLEMNE 124 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 T L + +++ D + RL V Sbjct: 125 TTLTLSYRDKAVTRKAQVE----LDQIEKIRLAV 154 >gi|22299481|ref|NP_682728.1| hypothetical protein tll1938 [Thermosynechococcus elongatus BP-1] gi|22295664|dbj|BAC09490.1| tll1938 [Thermosynechococcus elongatus BP-1] Length = 168 Score = 85.1 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 9/149 (6%) Query: 25 ISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ Q V ++ V + L + +L++ V + + +L DCE LS+A+ LD Sbjct: 21 VQTLAQQVADQEHLDLVSVQWLTHQSPPILRVEVRHPENDTSLEDCERLSRALEMALDEL 80 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 E Y LEVSSPG+ + DF + G V K G ++ E Sbjct: 81 PEFEFAYVLEVSSPGLSDYLSSDRDFDAFRGFPVRVTTTAPHRGKTLWEGNLIRRDEVNV 140 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 +L + R +AI + S +L Sbjct: 141 YLNQRGRS--------LAIPRSLIASVQL 161 >gi|257126085|ref|YP_003164199.1| hypothetical protein Lebu_1320 [Leptotrichia buccalis C-1013-b] gi|257050024|gb|ACV39208.1| protein of unknown function DUF150 [Leptotrichia buccalis C-1013-b] Length = 163 Score = 84.7 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 73/157 (46%), Gaps = 10/157 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDD-GNMTLRDCEELSQAI 76 + + I+ ++EM + + + L+++VE++D TL DC + S+ I Sbjct: 2 EQILNEFEKRIELHLKEMKLELADLEYVRDGGYNYLRVYVEKEDGSTTTLDDCIDFSREI 61 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 + +++I+ + LEVS+PG++R + + DFLR+ G + + + +K +GK+ Sbjct: 62 DGV--ADDLIDEKFFLEVSTPGVERRLKKPKDFLRFLGEKINVQAKSNIDGAKKFLGKLE 119 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 FL E G+ + I L A LI Sbjct: 120 KFENDTIFLLDENLGK------VVEIPLLKLKKANLI 150 >gi|315452832|ref|YP_004073102.1| ribosome maturation factor rimP [Helicobacter felis ATCC 49179] gi|315131884|emb|CBY82512.1| ribosome maturation factor rimP [Helicobacter felis ATCC 49179] Length = 156 Score = 84.7 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 72/157 (45%), Gaps = 13/157 (8%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPIL 80 + ++++ ++ + ++ L+E +L+I ++ +G +L C+E S ISP+L Sbjct: 3 TSQLETLLENTLQSIGCALYDVAFLKENQTDILRISIKALEGPTSLDVCQEASLLISPLL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 DV I G Y LEVSS G++R + ++ F G ++ C+I+ ++ +L G + Sbjct: 63 DVHAPIAGSYTLEVSSMGLERTLSKRRHFELSIGELIECKILDNT----RLRGTLEALEG 118 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 L E ++ + A+ I E Sbjct: 119 ENILLNIEG--------TTQSLPLAQIKRAKTIFEFE 147 >gi|157164808|ref|YP_001466379.1| hypothetical protein CCC13826_1497 [Campylobacter concisus 13826] gi|259585734|sp|A7ZC71|RIMP_CAMC1 RecName: Full=Ribosome maturation factor rimP gi|112801640|gb|EAT98984.1| protein Tmden_0678 [Campylobacter concisus 13826] Length = 138 Score = 84.7 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 15/147 (10%) Query: 29 IQPVIEEMSFRSVQISLLEEKNLLL-QIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 + +I E + E + ++++ + DG ++L DCE++S+ +SPI DV + Sbjct: 4 LDKLIRECGVELYDSEIANENGRAIFRVYITK-DGGVSLDDCEKVSRLLSPIFDVTPPVS 62 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 G Y LEVSSPG++R + + S F G +V + +K G+++ E +E Sbjct: 63 GDYNLEVSSPGLERKLSKPSHFKASVGELVKVQTEA-----EKFAGRLVKADEESIAVEN 117 Query: 148 EKRGEKDMNELQIAISFDSLLSARLIV 174 E E I+ + A+ + Sbjct: 118 E--------EGIFEINISEIKKAKTYL 136 >gi|116669974|ref|YP_830907.1| hypothetical protein Arth_1413 [Arthrobacter sp. FB24] gi|259585698|sp|A0JUT7|RIMP_ARTS2 RecName: Full=Ribosome maturation factor rimP gi|116610083|gb|ABK02807.1| protein of unknown function DUF150 [Arthrobacter sp. FB24] Length = 205 Score = 84.7 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 37/159 (23%), Positives = 72/159 (45%), Gaps = 12/159 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDG---NMTLRDCEELSQAIS 77 A + ++++P ++ +S+ + N ++ + V+ ++L E+S+ +S Sbjct: 28 AERVRALLEPSVQAHRLYLEDVSIHVAGANRVVHVVVDLPQEETGGVSLDVIAEISKELS 87 Query: 78 PILDVENIIEG-HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 ILD + + Y LEVSSPG+ RP+ + R G +V ++ + L G+I Sbjct: 88 GILDGDPSYDSRPYDLEVSSPGVGRPLTEPRHWHRARGRMVKVNVIQG----ENLTGRIQ 143 Query: 137 GTSETGFFLEKE---KRGEKDMNELQIAISFDSLLSARL 172 + G L E K+G K I FD + + ++ Sbjct: 144 SVDDDGVTLVPEIAAKKGMKPKQGEPEKIPFDRIRNGKV 182 >gi|21911035|ref|NP_665303.1| hypothetical protein SpyM3_1499 [Streptococcus pyogenes MGAS315] gi|34223120|sp|Q8K642|RIMP_STRP3 RecName: Full=Ribosome maturation factor rimP gi|21905244|gb|AAM80106.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315] Length = 178 Score = 84.7 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 67/162 (41%), Gaps = 9/162 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ + P I+ + V + + + +L I V+++D +T+ D +L+ Sbjct: 21 IANTSIIDIVTKTVTPEIKA-PYELVDVEYDKMGSDYILSILVDKED-GITVEDTSDLTN 78 Query: 75 AISPILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 ISP+LD + Y LEVSSPG++RP+ G + + + + Sbjct: 79 IISPLLDTIDPDPFPNQYMLEVSSPGLERPLKTADSLKAAVGSYINVSLYQAIDKVKVFQ 138 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G ++ ++ + + I + ++ R+ V Sbjct: 139 GDLLAFDGETLTIDYLDK----TRHKIVNIPYQAVAKVRMAV 176 >gi|239815724|ref|YP_002944634.1| hypothetical protein Vapar_2746 [Variovorax paradoxus S110] gi|259645131|sp|C5CLW1|RIMP_VARPS RecName: Full=Ribosome maturation factor rimP gi|239802301|gb|ACS19368.1| protein of unknown function DUF150 [Variovorax paradoxus S110] Length = 212 Score = 84.7 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 72/188 (38%), Gaps = 42/188 (22%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVE--------------RDDGNMTLRDCE 70 + ++ + + + V+I LL++ ++ + +T+ DCE Sbjct: 3 LQQTVEQTVAGLGYDLVEIERSAGG--LLRVTIDLPWTAPTSEAVAAGIPEPFVTVEDCE 60 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG---- 126 ++++ + L+V+ + + RLEVSSPGIDRP+ + DF R+ G V+ + G Sbjct: 61 KVTRQLQFALEVDGV--DYKRLEVSSPGIDRPLRNEQDFERFVGEVIDITLKAPMGAAAA 118 Query: 127 -----DKQKLIGKIMGTSETG----FFLEKEKRGEKDMNELQ-----------IAISFDS 166 ++K G + + + + E + + D Sbjct: 119 GQVSATRKKFRGTLERVAGADGAPGWQIVWSDAPEPKPGQKVSKKRAPAKLHALGFVLDE 178 Query: 167 LLSARLIV 174 L ARL Sbjct: 179 LRDARLAP 186 >gi|50914807|ref|YP_060779.1| hypothetical protein M6_Spy1461 [Streptococcus pyogenes MGAS10394] gi|71904118|ref|YP_280921.1| hypothetical protein M28_Spy1456 [Streptococcus pyogenes MGAS6180] gi|71911226|ref|YP_282776.1| hypothetical protein M5005_Spy_1413 [Streptococcus pyogenes MGAS5005] gi|94989045|ref|YP_597146.1| hypothetical protein MGAS9429_Spy1415 [Streptococcus pyogenes MGAS9429] gi|94991043|ref|YP_599143.1| hypothetical protein MGAS10270_Spy1534 [Streptococcus pyogenes MGAS10270] gi|94992936|ref|YP_601035.1| hypothetical protein MGAS2096_Spy1439 [Streptococcus pyogenes MGAS2096] gi|209559842|ref|YP_002286314.1| hypothetical protein Spy49_1341c [Streptococcus pyogenes NZ131] gi|34223094|sp|P59819|RIMP_STRP1 RecName: Full=Ribosome maturation factor rimP gi|73921027|sp|Q5XAG7|RIMP_STRP6 RecName: Full=Ribosome maturation factor rimP gi|91208006|sp|Q48RU4|RIMP_STRPM RecName: Full=Ribosome maturation factor rimP gi|166979769|sp|Q1JFG0|RIMP_STRPD RecName: Full=Ribosome maturation factor rimP gi|166979847|sp|Q1JAB7|RIMP_STRPB RecName: Full=Ribosome maturation factor rimP gi|166979918|sp|Q1JKG7|RIMP_STRPC RecName: Full=Ribosome maturation factor rimP gi|226695935|sp|B5XHV7|RIMP_STRPZ RecName: Full=Ribosome maturation factor rimP gi|50903881|gb|AAT87596.1| Hypothetical cytosolic protein [Streptococcus pyogenes MGAS10394] gi|71803213|gb|AAX72566.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS6180] gi|71854008|gb|AAZ52031.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS5005] gi|94542553|gb|ABF32602.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS9429] gi|94544551|gb|ABF34599.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS10270] gi|94546444|gb|ABF36491.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS2096] gi|209541043|gb|ACI61619.1| transcription termination protein NusA-like protein [Streptococcus pyogenes NZ131] Length = 178 Score = 84.3 bits (207), Expect = 7e-15, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 67/162 (41%), Gaps = 9/162 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ + P I+ + V + + + +L I V++ +G +T+ D +L+ Sbjct: 21 IANTSIIDIVTKTVTPEIKA-PYELVDVEYDKMGSDYILSILVDK-EGGITVEDTSDLTN 78 Query: 75 AISPILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 ISP+LD + Y LEVSSPG++RP+ G + + + + Sbjct: 79 IISPLLDTIDPDPFPNQYMLEVSSPGLERPLKTADSLKAAVGSYINVSLYQAIDKVKVFQ 138 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G ++ ++ + + I + ++ R+ V Sbjct: 139 GDLLAFDGETLTIDYLDK----TRHKIVNIPYQAVAKVRMAV 176 >gi|220907501|ref|YP_002482812.1| hypothetical protein Cyan7425_2088 [Cyanothece sp. PCC 7425] gi|254801539|sp|B8HUA6|RIMP_CYAP4 RecName: Full=Ribosome maturation factor rimP gi|219864112|gb|ACL44451.1| protein of unknown function DUF150 [Cyanothece sp. PCC 7425] Length = 154 Score = 84.3 bits (207), Expect = 8e-15, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 66/153 (43%), Gaps = 9/153 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L +I + P+ +++ V +L++ + + +L DCE +S + Sbjct: 5 LIPEILDLAVPLAADLNLEVVGAVFHTHLNPPVLRVDIRNLSADTSLEDCERMSHRLETA 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD +++ G Y LEVSSPGI R + +F+ + G V +++ +G ++ Sbjct: 65 LDAADLVAGTYVLEVSSPGISRLLSSDREFVSFRGFSVIVRTREPIAGQREWVGNLVQRD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 E +L ++ R I+I + +L Sbjct: 125 EEFVYLNQKGRA--------ISIPRHLVTQVQL 149 >gi|315639113|ref|ZP_07894280.1| conserved hypothetical protein [Campylobacter upsaliensis JV21] gi|315480817|gb|EFU71454.1| conserved hypothetical protein [Campylobacter upsaliensis JV21] Length = 139 Score = 84.3 bits (207), Expect = 8e-15, Method: Composition-based stats. Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 14/144 (9%) Query: 29 IQPVIEEMSFRSVQISLLEEKNLLL-QIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 ++ + +E L+ E + +I++ + +G ++L DC LS+ +SPI DVE + Sbjct: 4 LKALCKEAGVELYDSELVSENGKKIYRIYIMK-EGGVSLEDCARLSEILSPIFDVEPPVS 62 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 G Y LEVSS G++R + F + G ++ K+K+ GK++ FL+ Sbjct: 63 GEYFLEVSSAGLERKLSTLEHFEKSVGEMLKITTSE----KEKIQGKLLKVEGENIFLQD 118 Query: 148 EKRGEKDMNELQIAISFDSLLSAR 171 EK +I I F + A+ Sbjct: 119 EK--------AEICIEFSQVKKAK 134 >gi|157414451|ref|YP_001481707.1| hypothetical protein C8J_0131 [Campylobacter jejuni subsp. jejuni 81116] gi|205425409|sp|A8FJU3|RIMP_CAMJ8 RecName: Full=Ribosome maturation factor rimP gi|157385415|gb|ABV51730.1| hypothetical protein C8J_0131 [Campylobacter jejuni subsp. jejuni 81116] gi|315931533|gb|EFV10500.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni 327] Length = 140 Score = 84.3 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 10/143 (6%) Query: 29 IQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEG 88 ++ + +E L+ E + + +G + L DC LS+ +SPI DVE + G Sbjct: 3 LEALCKEAGLSFYDDELVSENGRKIYRIYVQKEGGVNLDDCARLSEILSPIFDVEPPVNG 62 Query: 89 HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKE 148 Y LEVSSPG++R + + F + G +V +K+K KI+ + LE Sbjct: 63 EYFLEVSSPGLERKLSKIEHFAKSIGELVKITT----NEKEKFEAKIIAVDDENITLENL 118 Query: 149 KRGEKDMNELQIAISFDSLLSAR 171 + EK I+F+ + AR Sbjct: 119 ENKEKT------TINFNDIKKAR 135 >gi|297191725|ref|ZP_06909123.1| UPF0090 protein [Streptomyces pristinaespiralis ATCC 25486] gi|197721419|gb|EDY65327.1| UPF0090 protein [Streptomyces pristinaespiralis ATCC 25486] Length = 165 Score = 84.3 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 9/152 (5%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++P++ +I + + +L+I V+ D+ + L C ELS+AIS LD Sbjct: 7 ERLRGLLEPLVSAAELDLEEIEVSRAGRRRMLRITVDSDE-GVELDACAELSRAISEKLD 65 Query: 82 VENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + + EG Y LEVSSPG DRP+ F+R G +V ++ L+ +++ + Sbjct: 66 ETDAMGEGEYVLEVSSPGADRPLSEHRHFVRATGRLVKLQLKEGGD----LVARLLTVDD 121 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G LE + ++ +FD ++ AR+ Sbjct: 122 EGLDLEVPGVKGRKPTARRV--AFDDIVKARV 151 >gi|329947838|ref|ZP_08294770.1| hypothetical protein HMPREF9056_02685 [Actinomyces sp. oral taxon 170 str. F0386] gi|328523462|gb|EGF50560.1| hypothetical protein HMPREF9056_02685 [Actinomyces sp. oral taxon 170 str. F0386] Length = 165 Score = 83.9 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 73/169 (43%), Gaps = 11/169 (6%) Query: 10 KYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGN--MTL 66 ++PR D LA ++ ++ PV+ + + ++++FV+ DG + + Sbjct: 3 AHDPRKRSD-ALARSLTDLLAPVVADAGLHLEAVETTRAGRYSVVRVFVDLADGPGDLDI 61 Query: 67 RDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG 126 ++ A+S LD + ++G Y LEVS+PG +R + F R GH Sbjct: 62 DTLGPVTAAVSQALDESDPVKGQYTLEVSTPGAERELSTLRHFRRAVGHSARVRTAD--- 118 Query: 127 DKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 ++L G + G +++ ++ I+ + AR++VT Sbjct: 119 --EELTGVVTAADAGGD--NDAGLVSIEVDGVERRIALGDIAEARMVVT 163 >gi|311104986|ref|YP_003977839.1| hypothetical protein AXYL_01790 [Achromobacter xylosoxidans A8] gi|310759675|gb|ADP15124.1| hypothetical protein AXYL_01790 [Achromobacter xylosoxidans A8] Length = 182 Score = 83.9 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 77/163 (47%), Gaps = 21/163 (12%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 D+ ++ + + M V + LL++ ++R G + + DCE++S+ +S + +V Sbjct: 17 ADLFALTKEALAGMDVELVDVERAALG--LLRVTIDRV-GGVRIEDCEQVSRQLSRVFEV 73 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM------ 136 EN+ + R+EV SPG+DRP+ +++F R+ G + ++ + ++ G + Sbjct: 74 ENV--DYKRMEVGSPGVDRPLRNEAEFRRFAGERIEIKLREALDGRKVFAGILTMPEDDA 131 Query: 137 -------GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G +T F LE E K + + D + A+L Sbjct: 132 AASDAAAGMQKTVFGLEFE---AKKNEIQVLNFTVDDIERAKL 171 >gi|57237145|ref|YP_178157.1| hypothetical protein CJE0133 [Campylobacter jejuni RM1221] gi|218561819|ref|YP_002343598.1| hypothetical protein Cj0138 [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|34223082|sp|Q9PIY9|RIMP_CAMJE RecName: Full=Ribosome maturation factor rimP gi|81354202|sp|Q5HX28|RIMP_CAMJR RecName: Full=Ribosome maturation factor rimP gi|57165949|gb|AAW34728.1| conserved hypothetical protein [Campylobacter jejuni RM1221] gi|112359525|emb|CAL34309.1| conserved hypothetical protein Cj0138 [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315057578|gb|ADT71907.1| hypothetical protein CJS3_0137 [Campylobacter jejuni subsp. jejuni S3] gi|315926922|gb|EFV06284.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 140 Score = 83.9 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 10/143 (6%) Query: 29 IQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEG 88 ++ + +E L+ E + + +G + L DC LS+ +SPI DVE+ + G Sbjct: 3 LEALCKEAGLSFYDDELVSENGRKIYRIYVQKEGGVNLDDCARLSEILSPIFDVESPVNG 62 Query: 89 HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKE 148 Y LEVSSPG++R + + F + G +V +K+K KI+ + LE Sbjct: 63 EYFLEVSSPGLERKLSKIEHFAKSIGELVKITT----NEKEKFEAKIIAVDDENITLENL 118 Query: 149 KRGEKDMNELQIAISFDSLLSAR 171 + EK I+F+ + AR Sbjct: 119 ENKEKT------TINFNDIKKAR 135 >gi|307747095|gb|ADN90365.1| UPF0090 protein [Campylobacter jejuni subsp. jejuni M1] Length = 140 Score = 83.5 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 10/143 (6%) Query: 29 IQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEG 88 ++ + +E L+ E + + +G + L DC LS+ +SPI DVE + G Sbjct: 3 LEALCKEAGLSFYDDELVSENGRKIYRIYVQKEGGVNLDDCARLSEILSPIFDVEPPVNG 62 Query: 89 HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKE 148 Y LEVSSPG++R + + F + G +V +K+K KI+ + LE Sbjct: 63 EYFLEVSSPGLERKLSKIEHFAKSIGELVKITT----NEKEKFEAKIIAVDDENITLENL 118 Query: 149 KRGEKDMNELQIAISFDSLLSAR 171 + EK I+F + A+ Sbjct: 119 ENKEKT------TINFSDIRKAK 135 >gi|306826864|ref|ZP_07460164.1| protein of hypothetical function DUF150 [Streptococcus pyogenes ATCC 10782] gi|34223095|sp|P59820|RIMP_STRP8 RecName: Full=Ribosome maturation factor rimP gi|304430882|gb|EFM33891.1| protein of hypothetical function DUF150 [Streptococcus pyogenes ATCC 10782] Length = 178 Score = 83.5 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 67/162 (41%), Gaps = 9/162 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ + P I+ + V + + + +L I V++ +G +T+ D +L+ Sbjct: 21 IANTSIIDIVTKTVTPEIKA-PYELVDVEYDKMGSDYILSILVDK-EGGITVEDTSDLTN 78 Query: 75 AISPILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 ISP+LD + Y LEVSSPG++RP+ G + + + + Sbjct: 79 IISPLLDTIDPDPFPNQYMLEVSSPGLERPLKTADSLKAAVGSYINVSLYQAIDKVKVFQ 138 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G ++ ++ + + I + ++ R+ V Sbjct: 139 GDLLAFDGETLTIDYLDK----TRHKIVNIPYQAVAKVRMAV 176 >gi|54026040|ref|YP_120282.1| hypothetical protein nfa40690 [Nocardia farcinica IFM 10152] gi|81373776|sp|Q5YSC3|RIMP_NOCFA RecName: Full=Ribosome maturation factor rimP gi|54017548|dbj|BAD58918.1| hypothetical protein [Nocardia farcinica IFM 10152] Length = 217 Score = 83.5 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 58/165 (35%), Gaps = 16/165 (9%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-----LLQIFVERDDGNMTLRDCEE 71 M +S ++ ++E F + + + + + V+ DG L E Sbjct: 1 MPMPTEERVSQLVAGLVERRGFDLEGVEITRAGSRADAQPRVTVVVDS-DGAADLDAVAE 59 Query: 72 LSQAISPILDVENIIEGH-YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG---- 126 LS +S +LD +I Y LEV++PG+DRP+ + R G V + + Sbjct: 60 LSSEMSVVLDDTDIFGDSPYLLEVTTPGVDRPLTAPRHWRRAQGRKVRITLRPGAEPPDP 119 Query: 127 -DKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 ++ L + N ++ + + A Sbjct: 120 GGSAGFEARVGVLDGEQIALVLGGK----RNPHRVRVPLADIERA 160 >gi|284925431|gb|ADC27783.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni IA3902] Length = 140 Score = 83.5 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 10/143 (6%) Query: 29 IQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEG 88 ++ + +E L+ E + + +G + L DC LS+ +SPI DVE+ + G Sbjct: 3 LEALCKEAGLSFYDDELVSENGKKIYRIYVQKEGGVNLDDCARLSEILSPIFDVESPVNG 62 Query: 89 HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKE 148 Y LEVSSPG++R + + F + G +V +K+K KI+ + LE Sbjct: 63 EYFLEVSSPGLERKLSKIEHFAKSIGELVKITT----NEKEKFEAKIIAVDDENITLENL 118 Query: 149 KRGEKDMNELQIAISFDSLLSAR 171 + EK I+F+ + AR Sbjct: 119 ENKEKT------TINFNDIKKAR 135 >gi|325479429|gb|EGC82525.1| hypothetical protein HMPREF9290_1585 [Anaerococcus prevotii ACS-065-V-Col13] Length = 147 Score = 83.5 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 63/142 (44%), Gaps = 4/142 (2%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 M L + + + I E+ + V I K + F ++ +T+ DCE++S + Sbjct: 1 MDLTDRLREIFEADISELGYELVDIEYKGSKGNKILTFFIFNEEGITIDDCEKVSAFLDT 60 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LD ++I+ Y LEVSS + RP+ D R V+ ++ + +GK+ Sbjct: 61 RLDELDLIKDSYYLEVSSQDLSRPLKTDRDIERNINEVLKVKMKDG----EVFLGKVSDI 116 Query: 139 SETGFFLEKEKRGEKDMNELQI 160 +E + + E + +N+ + Sbjct: 117 NEDTYEFDLEDGTSRQVNKSDV 138 >gi|259016315|sp|Q8DHL1|RIMP_THEEB RecName: Full=Ribosome maturation factor rimP Length = 157 Score = 83.5 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 9/149 (6%) Query: 25 ISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ Q V ++ V + L + +L++ V + + +L DCE LS+A+ LD Sbjct: 10 VQTLAQQVADQEHLDLVSVQWLTHQSPPILRVEVRHPENDTSLEDCERLSRALEMALDEL 69 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 E Y LEVSSPG+ + DF + G V K G ++ E Sbjct: 70 PEFEFAYVLEVSSPGLSDYLSSDRDFDAFRGFPVRVTTTAPHRGKTLWEGNLIRRDEVNV 129 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARL 172 +L + R +AI + S +L Sbjct: 130 YLNQRGRS--------LAIPRSLIASVQL 150 >gi|118474205|ref|YP_892625.1| hypothetical protein CFF8240_1491 [Campylobacter fetus subsp. fetus 82-40] gi|261885775|ref|ZP_06009814.1| hypothetical protein CfetvA_11986 [Campylobacter fetus subsp. venerealis str. Azul-94] gi|259585736|sp|A0RQZ2|RIMP_CAMFF RecName: Full=Ribosome maturation factor rimP gi|118413431|gb|ABK81851.1| hypothetical protein CFF8240_1491 [Campylobacter fetus subsp. fetus 82-40] Length = 140 Score = 83.1 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 67/141 (47%), Gaps = 13/141 (9%) Query: 32 VIEEMSFRSVQISLLEEKNLLL-QIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHY 90 ++ + ++ E ++ ++++ + +G ++L +CE +S+ +SPI DV + G + Sbjct: 7 LVSQCGVDLYDAEVVNENGRVIYRVYITK-NGGVSLEECEAVSKLLSPIYDVMPPVSGEW 65 Query: 91 RLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKR 150 LEVSSPG++R + + F G + DK ++ GKI+ + + + Sbjct: 66 ILEVSSPGLERKLSKIEHFTLSIGEFAKIIL----NDKTEIKGKIVSVKDDNICINIKNN 121 Query: 151 GEKDMNELQIAISFDSLLSAR 171 I + F+++ A+ Sbjct: 122 -------ESIEVKFENIKKAK 135 >gi|320008231|gb|ADW03081.1| protein of unknown function DUF150 [Streptomyces flavogriseus ATCC 33331] Length = 165 Score = 83.1 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 66/151 (43%), Gaps = 7/151 (4%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 + +++P++ +I + + + + + L C ELS++IS LD Sbjct: 7 DRLRGLLEPLVSAKELDLEEIEVSRAGRRRVLRVIVDSEDGVELDTCAELSRSISEKLDE 66 Query: 83 ENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + + E Y LEVSSPG DRP+ ++R G + + L+ +I+G + Sbjct: 67 TDAMGEDEYVLEVSSPGADRPLTEHRHYVRATGRLARLTLGEGGE----LVARILGVDDE 122 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G LE + ++ +FD + AR+ Sbjct: 123 GLDLEVPGVKGRKPTSRRV--AFDEISRARV 151 >gi|227486446|ref|ZP_03916762.1| protein of hypothetical function DUF150 [Anaerococcus lactolyticus ATCC 51172] gi|227235627|gb|EEI85642.1| protein of hypothetical function DUF150 [Anaerococcus lactolyticus ATCC 51172] Length = 147 Score = 83.1 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 62/154 (40%), Gaps = 11/154 (7%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 M L + + ++ IE + + V + + K+ IF + +T+ DCE +S + Sbjct: 1 MDLIEKLKNALESDIENLGYDLVDLEFIGGKDGNRLIFYIYKEDGITIDDCERVSGFLDE 60 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LD ++I+ Y LEVSS + RP+ D LR ++ ++ K+ Sbjct: 61 KLDELDLIKSSYYLEVSSQDLSRPLKTDKDLLRNKDELLKIKLKNGDLILAKMK------ 114 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ E + I I+ + ++ Sbjct: 115 -----DIKDESIVFAKEDGKDIEINKSDIKEIKI 143 >gi|160947564|ref|ZP_02094731.1| hypothetical protein PEPMIC_01499 [Parvimonas micra ATCC 33270] gi|158446698|gb|EDP23693.1| hypothetical protein PEPMIC_01499 [Parvimonas micra ATCC 33270] Length = 154 Score = 83.1 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 3/155 (1%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELS 73 + + L I + ++ E V + ++E K +L+IF+++ DG + L CE S Sbjct: 1 MKKENELLKTIEKNFKTILLEKGIYFVNVEYVKEPKGNVLRIFIDK-DGGVDLDSCEMTS 59 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 IS LD + IE Y LEVSSPG++R + + G V + ++++ IG Sbjct: 60 NIISDWLDEVDPIEDSYFLEVSSPGVEREIKSDEQLKTFIGKKVLVKCYKKINNEKEFIG 119 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLL 168 + LE + + IAI + Sbjct: 120 YLKSFDREKLTLEI-GKSSIIFSRKDIAIIKSQIE 153 >gi|326799023|ref|YP_004316842.1| ribosome maturation factor rimP [Sphingobacterium sp. 21] gi|326549787|gb|ADZ78172.1| Ribosome maturation factor rimP [Sphingobacterium sp. 21] Length = 154 Score = 83.1 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 72/156 (46%), Gaps = 9/156 (5%) Query: 19 MGLAGDISSVIQPVIEEM-SFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 MG+ ++ +++ I + V + + L I ++ D +T++DC +S+ + Sbjct: 1 MGIEKRVTELVEEKIADRPDLFLVDVKMHSNGK--LIIHMDG-DQGITIQDCAAISRHVG 57 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 L+ EN IE Y LEVSSPGID P+ + + G + ++ S K G ++ Sbjct: 58 YHLEEENAIENAYNLEVSSPGIDTPLKLLRQYQKNIGRSITLKMADGS----KREGTLLA 113 Query: 138 TSETGFFL-EKEKRGEKDMNELQIAISFDSLLSARL 172 SE L E K K +++ + D ++ ++ Sbjct: 114 ASEKEMKLAETIKEKGKKAIQVETVVPLDQVIETKV 149 >gi|291298940|ref|YP_003510218.1| hypothetical protein Snas_1418 [Stackebrandtia nassauensis DSM 44728] gi|290568160|gb|ADD41125.1| protein of unknown function DUF150 [Stackebrandtia nassauensis DSM 44728] Length = 162 Score = 83.1 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 61/152 (40%), Gaps = 14/152 (9%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 I +V++PV+ E + ++ + + L + D + L +S+ +S LD Sbjct: 7 KRILAVLEPVLAEAGYDLEELKVSQAGRRTLVRVLVDRDAGVDLDAIASVSRVLSKALDK 66 Query: 83 ENIIEG-----HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +G Y LEVSSPG+DRP+ + R G +V+ + + + +I Sbjct: 67 SEADDGPFATNSYTLEVSSPGVDRPLTLPRHWRRNVGRLVSVRLSDA-----TVTARIHA 121 Query: 138 TSETGFFLEKEKR----GEKDMNELQIAISFD 165 + LE D+ ++ + F Sbjct: 122 ADDENVELELSDGTRRVAYGDLGPGRVQLEFS 153 >gi|257460847|ref|ZP_05625948.1| conserved hypothetical protein [Campylobacter gracilis RM3268] gi|257442178|gb|EEV17320.1| conserved hypothetical protein [Campylobacter gracilis RM3268] Length = 139 Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 14/144 (9%) Query: 29 IQPVIEEMSFRSVQISLLEEKNLLL-QIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 ++ + E + + + E + +I + + G + L DCE LS+ +SPI DVE +E Sbjct: 4 LEALARECGVQLYDVETVSENGRTIYRISITKA-GGVGLDDCERLSRLLSPIYDVEPPLE 62 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 G + LEV SPG++R + + F G +V QKL G+++ L Sbjct: 63 GEWTLEVGSPGLERKLSKPQHFANSVGELVRLSCTDG----QKLSGEVLDCEGGVLRLRT 118 Query: 148 EKRGEKDMNELQIAISFDSLLSAR 171 + ++++ D + AR Sbjct: 119 DG--------GEVSVRLDEIKKAR 134 >gi|329736175|gb|EGG72447.1| hypothetical protein SEVCU028_0396 [Staphylococcus epidermidis VCU028] Length = 114 Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 61/115 (53%), Gaps = 5/115 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + + ++IQPV+ +++F V I ++ K+ L+I +++ +G + L DC S+ IS Sbjct: 2 SKITEQVEALIQPVLNDLNFELVDIEYVKEGKDHFLRISIDK-EGGVDLNDCTIASEKIS 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 ++D + I Y L+V+SPG +RP+ +K + + + L +++ Sbjct: 61 EVMDENDPIPEMYYLDVASPGAERPIKKK---KIFIMLSINPFLYLFMHQLKEIK 112 >gi|325847928|ref|ZP_08170099.1| hypothetical protein HMPREF9246_0391 [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480797|gb|EGC83851.1| hypothetical protein HMPREF9246_0391 [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 146 Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 6/150 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M L + ++ I + + V I E KN +L+ F+ + DG +T+ DCE+ S +S Sbjct: 1 MDLISKLKENLESDINNLGYELVDIEFVTEGKNKILRFFIYK-DGGITIDDCEKTSNLLS 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD ++I+ Y LEVSSP + RP+ D R ++ ++ +K + I Sbjct: 60 ERLDEIDLIKSFYYLEVSSPDLSRPLKTDRDLERNKDELLEVKLKNG----EKFLANIEE 115 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSL 167 E + E ++ I + + Sbjct: 116 IKEDSLVFKCEDGQKEVDKNEIKTIKIEIV 145 >gi|283955583|ref|ZP_06373077.1| hypothetical protein C1336_000030016 [Campylobacter jejuni subsp. jejuni 1336] gi|283792926|gb|EFC31701.1| hypothetical protein C1336_000030016 [Campylobacter jejuni subsp. jejuni 1336] Length = 140 Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 10/143 (6%) Query: 29 IQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEG 88 ++ + +E L+ E + + +G + L DC LS+ +SPI DVE + G Sbjct: 3 LEALCKEAGLSFYDDELVSENGRKIYRIYVQKEGGVNLDDCARLSEILSPIFDVEPPVNG 62 Query: 89 HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKE 148 Y LEVSSPG++R + + F + G +V + +K+K KI+ + LE Sbjct: 63 EYFLEVSSPGLERKLSKIEHFAKSIGELVKIT----ANEKEKFEAKIIAVDDENITLENL 118 Query: 149 KRGEKDMNELQIAISFDSLLSAR 171 + EK I+F+ + AR Sbjct: 119 ENKEKT------TINFNDIKKAR 135 >gi|320528333|ref|ZP_08029495.1| hypothetical protein HMPREF9430_01620 [Solobacterium moorei F0204] gi|320131247|gb|EFW23815.1| hypothetical protein HMPREF9430_01620 [Solobacterium moorei F0204] Length = 153 Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 66/151 (43%), Gaps = 5/151 (3%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 ++ + QPV +E R +I L LQ+ ++ D + L C E+S+ + +LD Sbjct: 5 DKLTKLFQPVFDECHVRLYEIVWL-GNEKTLQVAIDNDAHAIDLDICAEVSEKLGVVLDK 63 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 + I+ Y LEV SPG +R + ++F + + E+ + ++ G + S Sbjct: 64 YDPIKEEYSLEVCSPGAEREIKDYAEFEQLVDEYIYVELKEPFKNMVEITGYVRSASVDA 123 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 LE + K I +++ ARL Sbjct: 124 IELEYRDKAVK----RTATIEKNNIRFARLA 150 >gi|139473253|ref|YP_001127968.1| hypothetical protein SpyM50378 [Streptococcus pyogenes str. Manfredo] gi|166990902|sp|A2RCZ7|RIMP_STRPG RecName: Full=Ribosome maturation factor rimP gi|134271499|emb|CAM29720.1| conserved hypothetical protein [Streptococcus pyogenes str. Manfredo] Length = 178 Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 66/162 (40%), Gaps = 9/162 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 + + ++ + P I+ + V + + + +L I V++ +G +T+ D +L+ Sbjct: 21 IANTSIIDIVTKTVTPEIKA-PYELVDVEYDKMGSDYILSILVDK-EGGITVEDTSDLTN 78 Query: 75 AISPILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 ISP+LD + Y LEVSSPG++RP+ G + + + + Sbjct: 79 IISPLLDTIDPDPFPNQYMLEVSSPGLERPLKTADSLKAAVGSYINVSLYQAIDKVKVFQ 138 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G ++ ++ + + I + + R+ V Sbjct: 139 GDLLAFDGETLTIDYLDK----TRHKIVNIPYQVVAKVRMAV 176 >gi|226226959|ref|YP_002761065.1| hypothetical protein GAU_1553 [Gemmatimonas aurantiaca T-27] gi|259585777|sp|C1A8N5|RIMP_GEMAT RecName: Full=Ribosome maturation factor rimP gi|226090150|dbj|BAH38595.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 155 Score = 82.7 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 7/155 (4%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVER-DDGNMTLRDCEELSQAISPIL 80 I ++ + + F V++ + +L+I ++R D+ +T+ DC +S+A+ L Sbjct: 3 EAIEPIVTQELAGLGFDLVELRRGGSRARPVLEIRIDRRDEEKVTIDDCARVSRALEARL 62 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + ++ Y LEVSSPG DRP+ +D+ R+ G L +G KQ++ + Sbjct: 63 EAAALVGEQYVLEVSSPGADRPLRHAADWRRFVGRRATVTSGLLAGGKQEVEIVAVTGEG 122 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 E +D ++++ + ARL Sbjct: 123 GA-----EVALVRDPKGREVSVPLREVSQARLAFN 152 >gi|212696552|ref|ZP_03304680.1| hypothetical protein ANHYDRO_01090 [Anaerococcus hydrogenalis DSM 7454] gi|212676488|gb|EEB36095.1| hypothetical protein ANHYDRO_01090 [Anaerococcus hydrogenalis DSM 7454] Length = 146 Score = 82.4 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 65/150 (43%), Gaps = 6/150 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M L + ++ I + + V I E N +L+ F+ + DG +T+ DCE+ S +S Sbjct: 1 MDLISKLKENLESDINNLGYELVDIEFVTEGNNKILRFFIYK-DGGITIDDCEKTSNLLS 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD ++I+ Y LEVSSP + RP+ D R ++ ++ +K + I Sbjct: 60 ERLDEIDLIKSFYYLEVSSPDLSRPLKTDRDLERNKDELLEVKLKNG----EKFLANIEE 115 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSL 167 E + E ++ I + + Sbjct: 116 IKENSLVFKCEDEQKEVDKNEIKTIKIEIV 145 >gi|21224052|ref|NP_629831.1| hypothetical protein SCO5703 [Streptomyces coelicolor A3(2)] gi|256784870|ref|ZP_05523301.1| hypothetical protein SlivT_10300 [Streptomyces lividans TK24] gi|289768764|ref|ZP_06528142.1| UPF0090 protein [Streptomyces lividans TK24] gi|34223163|sp|Q9KYR2|RIMP_STRCO RecName: Full=Ribosome maturation factor rimP gi|7801275|emb|CAB91139.1| hypothetical protein SC5H4.27 [Streptomyces coelicolor A3(2)] gi|289698963|gb|EFD66392.1| UPF0090 protein [Streptomyces lividans TK24] Length = 177 Score = 82.4 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 68/154 (44%), Gaps = 9/154 (5%) Query: 23 GDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++P++ +I++ + +L + V+ D L ++S+A+S LD Sbjct: 7 ERLRELLEPLVASQGLDLEEIAVDSVGRRRVLSVVVDS-DTGADLDRIADVSRALSAKLD 65 Query: 82 VENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + + EG Y LEV +PG +R + + ++R +V ++ L+ +I+ E Sbjct: 66 ETDAMGEGEYTLEVGTPGAERSLTQHRHYVRATDRLVRFQLREGGE----LVARILAVDE 121 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G LE G K + F + AR+ V Sbjct: 122 DGLDLEV--PGVKGRRPTTRRLPFGDIDKARVQV 153 >gi|94994922|ref|YP_603020.1| hypothetical protein MGAS10750_Spy1526 [Streptococcus pyogenes MGAS10750] gi|166979761|sp|Q1J5B0|RIMP_STRPF RecName: Full=Ribosome maturation factor rimP gi|94548430|gb|ABF38476.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS10750] Length = 178 Score = 82.4 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 66/162 (40%), Gaps = 9/162 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQ 74 + ++ + P I+ + V + + + +L I V++ +G +T+ D +L+ Sbjct: 21 IAITSIIDIVTKTVTPEIKA-PYELVDVEYDKMGSDYILSILVDK-EGGITVEDTSDLTN 78 Query: 75 AISPILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 ISP+LD + Y LEVSSPG++RP+ G + + + + Sbjct: 79 IISPLLDTIDPDPFPNQYMLEVSSPGLERPLKTADSLKAAVGSYINVSLYQAIDKVKVFQ 138 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G ++ ++ + + I + ++ R+ V Sbjct: 139 GDLLAFDGETLTIDYLDK----TRHKIVNIPYQAVAKVRMAV 176 >gi|206895232|ref|YP_002247277.1| protein of unknown function, putative [Coprothermobacter proteolyticus DSM 5265] gi|259585743|sp|B5Y930|RIMP_COPPD RecName: Full=Ribosome maturation factor rimP gi|206737849|gb|ACI16927.1| protein of unknown function, putative [Coprothermobacter proteolyticus DSM 5265] Length = 169 Score = 82.4 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 9/154 (5%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 D+ I ++ F + + EK + V + ++T+ DCE+L++AI P+L+ Sbjct: 8 ADLEERISKIVVSKGFYFIDLEERMEKGAHIISVVVHGEPSVTIGDCEKLTRAILPLLES 67 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 + LEV+SPG+DR + R+ ++ + G V+ G Q + K++G Sbjct: 68 FPWYGDNDHLEVTSPGLDRVLKREWEYEIFKGRVIDIS-FDRDGKSQTIRAKLVGRENEN 126 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLIVTD 176 +E E I FD + A+L+ + Sbjct: 127 VVIEYEGNY--------FRIPFDQVRKAKLVFDE 152 >gi|291166363|gb|EFE28409.1| hypothetical protein HMPREF0389_00324 [Filifactor alocis ATCC 35896] Length = 152 Score = 82.0 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 32/150 (21%), Positives = 76/150 (50%), Gaps = 4/150 (2%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQA 75 +A I + V++E + V + ++E L++FV++ DG + + + ++++ Sbjct: 1 MSKRIAVQIEELFLSVLDEK-YELVDVEYVKEGAFYYLRVFVDK-DGGLDIDEISDITRV 58 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 ++ +LD ++ I+ Y LEVS+PG+ R + ++ DF+R +G + ++ +++L G + Sbjct: 59 LNKLLDEKDPIQQQYFLEVSTPGLGRALKKERDFIRESGKEIELKLYQPVNGQKELSGVL 118 Query: 136 MGTSE-TGFFLEKEKRGEKDMNELQIAISF 164 +G E ++ E + +I Sbjct: 119 IGLDETGNIVIQSEDEQLCLSKKDIASIKL 148 >gi|320108354|ref|YP_004183944.1| hypothetical protein AciPR4_3194 [Terriglobus saanensis SP1PR4] gi|319926875|gb|ADV83950.1| protein of unknown function DUF150 [Terriglobus saanensis SP1PR4] Length = 195 Score = 81.6 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 42/193 (21%), Positives = 73/193 (37%), Gaps = 39/193 (20%) Query: 19 MGLA-GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDG-------------- 62 M L I V V++S K LQIFVE++ Sbjct: 1 MALELDKIRDAADRVAASHQLEIVEVSFTGAGKFSALQIFVEKNAEGRAAMLREAETDES 60 Query: 63 -------------NMTLRDCEELSQAISPILDVENIIEG--HYRLEVSSPGIDRPMVRKS 107 +T +DC + +LDVE ++ G Y LEVSSPGI+R + + + Sbjct: 61 KALPRGVPVEALSGVTHQDCAAFATDFGTLLDVEELVPGTTEYTLEVSSPGIERKLFKTA 120 Query: 108 DFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMN-------ELQI 160 D+ R+ G +V + + + G++ ++ L+ K + Sbjct: 121 DYERFAGSLVTLKTFQAINGTKNFTGRMT-FTDGTATLDLAAVKAKGKKKGTKAEAPQTV 179 Query: 161 AISFDSLLSARLI 173 I F+++ A+L+ Sbjct: 180 EIPFNAIEKAQLV 192 >gi|242309141|ref|ZP_04808296.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] gi|239524182|gb|EEQ64048.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] Length = 143 Score = 81.6 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 17/153 (11%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 M ++ ++ + IQ ++E + I+ L+E N +L+I + + +++L DC+E+S A+S Sbjct: 1 MLISQELQAKIQKLVESFGCKIYDITTLKENENQILRISITKK-PSVSLDDCQEVSLALS 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 P+LDVE Y LEVSSPGI+RP+ K F G ++ + + GK++ Sbjct: 60 PLLDVEIPNFEKYYLEVSSPGIERPLKTKEHFEDAIGELIKIKTISKQD----FKGKLIA 115 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 + LE + I + A Sbjct: 116 IDDESLKLESGE-----------IIPISEIKKA 137 >gi|226366089|ref|YP_002783872.1| hypothetical protein ROP_66800 [Rhodococcus opacus B4] gi|254806567|sp|C1B310|RIMP_RHOOB RecName: Full=Ribosome maturation factor rimP gi|226244579|dbj|BAH54927.1| hypothetical protein [Rhodococcus opacus B4] Length = 190 Score = 81.6 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 63/151 (41%), Gaps = 12/151 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++ +I +++ + +++ K+ ++I V+ D + L LS IS + Sbjct: 6 KERVTELISDLVQRQGYDVEDVAVTLAGKHSAVRIMVDS-DAGLELDAVANLSHEISEVF 64 Query: 81 D-VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 D V + E Y LEV+SPGIDRP+ + + R G ++ + ++G+I Sbjct: 65 DSVSDFGESPYTLEVTSPGIDRPLTHERHWRRARGRKARIDLAH-----ETVVGRIGALD 119 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 + R D+ I+ + A Sbjct: 120 GDSVAVVIGSRTGPDVR----RIALADIQKA 146 >gi|309804436|ref|ZP_07698504.1| conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] gi|308166249|gb|EFO68464.1| conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] Length = 115 Score = 81.6 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 53/105 (50%), Gaps = 3/105 (2%) Query: 31 PVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILD--VENIIE 87 P++ V I ++E N L+I+V+R+ + + + LS+++S LD + + Sbjct: 1 PLVHARGDELVDIEYVKENNQNYLRIYVDREPNGIDIDEIATLSESVSEQLDLINPDPLP 60 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 Y LE+SSPG++RP+ ++D+ + V + ++ + Sbjct: 61 DPYILELSSPGVERPIKTEADWCKAKNDYVHVGLYKKLMGRKVMK 105 >gi|299530200|ref|ZP_07043626.1| hypothetical protein CTS44_05471 [Comamonas testosteroni S44] gi|298721857|gb|EFI62788.1| hypothetical protein CTS44_05471 [Comamonas testosteroni S44] Length = 182 Score = 81.6 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 70/173 (40%), Gaps = 36/173 (20%) Query: 34 EEMSFRSVQISLLEEKNLLLQIFVERD------------DGNMTLRDCEELSQAISPILD 81 + + V+I LL+I ++ + +T+ DCE++++ + L+ Sbjct: 2 TGLGYDLVEIERSAGG--LLRITIDLPWQAPEEGAPELPEQFVTVEDCEKVTRQLQFALE 59 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSG---------DKQKLI 132 V+ + RLEVSSPGIDR + + DF+R+ G V + G +++K Sbjct: 60 VD--GADYARLEVSSPGIDRLLRHEQDFIRFEGSEVDLTLKAPIGAAGGDKINANRKKFR 117 Query: 133 GKIMGTSETGFFLEKEK-----------RGEKDMNELQIAISFDSLLSARLIV 174 G + T E G+ + + + + + D L ARL Sbjct: 118 GTLERTEEGGWQIVWSDEPPPKPGVRVSKKREPAPLNAMGFTLDELREARLAP 170 >gi|227537267|ref|ZP_03967316.1| protein of hypothetical function DUF150 [Sphingobacterium spiritivorum ATCC 33300] gi|227242871|gb|EEI92886.1| protein of hypothetical function DUF150 [Sphingobacterium spiritivorum ATCC 33300] Length = 156 Score = 81.6 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 75/158 (47%), Gaps = 9/158 (5%) Query: 17 GDMGLAGDISSVI-QPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 + + ++ + + + V I + +L+I V+ D + + DC ++S+ Sbjct: 1 MKTKVEQRVEELVLEKIGDREDLFIVSIKMQGNG--VLEILVDG-DSGIAIDDCVKISRH 57 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 + L+ EN+IE YRLEVSSPGID P+V + + G V + +K GK+ Sbjct: 58 VGFHLEEENVIETAYRLEVSSPGIDSPLVLIRQYEKNIGRNVRVKNHEG----EKREGKL 113 Query: 136 MGTSETGFFLEKEKRGEKDMN-ELQIAISFDSLLSARL 172 + +E+ +E+ K+ + ++ I F+ + ++ Sbjct: 114 LDVTESAITIEESKKEKGKKAVPVESVIPFEQIKETKV 151 >gi|222823265|ref|YP_002574838.1| conserved hypothetical protein (DUF150 domain protein) [Campylobacter lari RM2100] gi|254801701|sp|B9KEV2|RIMP_CAMLR RecName: Full=Ribosome maturation factor rimP gi|222538486|gb|ACM63587.1| conserved hypothetical protein (DUF150 domain protein) [Campylobacter lari RM2100] Length = 140 Score = 81.2 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 10/143 (6%) Query: 29 IQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEG 88 ++ + +E L+ E + + +G + L DC LS+ +SPI DVE + G Sbjct: 3 LEALCKEAGLSFYDDELVSENGKKIYRVYVQKEGGVKLDDCARLSEILSPIFDVEPPVSG 62 Query: 89 HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKE 148 Y LEVSS G++R + + F + +V K+K+ KI+ + LE Sbjct: 63 EYFLEVSSCGLERKLSKIEHFAKSINELVKITTSE----KEKIEAKIVSVDDENITLENL 118 Query: 149 KRGEKDMNELQIAISFDSLLSAR 171 K EK + F + AR Sbjct: 119 KTQEKT------TLKFSDIRKAR 135 >gi|256379833|ref|YP_003103493.1| hypothetical protein Amir_5837 [Actinosynnema mirum DSM 43827] gi|255924136|gb|ACU39647.1| protein of unknown function DUF150 [Actinosynnema mirum DSM 43827] Length = 174 Score = 81.2 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 65/151 (43%), Gaps = 13/151 (8%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 LA ++ V++ +E + + + + + L V D + L + + S+A+S L Sbjct: 9 LAAQLTPVVREAVEAIGYDLELLDVNQAGRRRLVKVVVDGDEGIGLDEVAQASRAVSAAL 68 Query: 81 D-VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 D E++I G Y LEV+SPG DRP+ R +LR +V + G++ Sbjct: 69 DANEHLIAGPYTLEVTSPGADRPLTRPRHWLRARLRLVKVKQPEQVE----WFGRVGDCD 124 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 +TG L + + + ++ A Sbjct: 125 DTGVVLLVKGELR--------RVEYSAIERA 147 >gi|149277311|ref|ZP_01883453.1| hypothetical protein PBAL39_10486 [Pedobacter sp. BAL39] gi|149232188|gb|EDM37565.1| hypothetical protein PBAL39_10486 [Pedobacter sp. BAL39] Length = 154 Score = 81.2 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 77/156 (49%), Gaps = 9/156 (5%) Query: 19 MGLAGDISSVIQPVIEEM-SFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M + ++ +I+ I + V++ +L L I V+ D+ ++++DC +S+ + Sbjct: 1 MQVEKRVTELIEEKISDRPELFLVEVKMLPNNK--LIIHVDGDE-GISIQDCAAISRHVG 57 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 L+ EN IE Y LEVSSPG+ P+ K + + G V+ ++ + GK++ Sbjct: 58 FHLEEENTIEKAYNLEVSSPGVGEPLKLKRQYDKNIGREVSVKLS----GGEVKEGKLLS 113 Query: 138 TSETGFFLEKE-KRGEKDMNELQIAISFDSLLSARL 172 + G +E + K K ++ ++ F+S+ ++ Sbjct: 114 VDDKGIIIEAKVKEKGKKAQLVETSVDFNSITETKV 149 >gi|154509103|ref|ZP_02044745.1| hypothetical protein ACTODO_01620 [Actinomyces odontolyticus ATCC 17982] gi|153798737|gb|EDN81157.1| hypothetical protein ACTODO_01620 [Actinomyces odontolyticus ATCC 17982] Length = 156 Score = 81.2 bits (199), Expect = 7e-14, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 68/153 (44%), Gaps = 15/153 (9%) Query: 22 AGDISSVIQPVIEEMSFRSVQI-SLLEEKNLLLQIFVERD--DGNMTLRDCEELSQAISP 78 G + ++ PV+ + + + LL++ VE G + ++S+A+S Sbjct: 7 EGPLEELLAPVVAQSGLELDSVIRSRSDAMPLLRVIVEAPIGAGGIDSDTLADVSRAVSK 66 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LDV + I+G Y LEVS+PG +R + + ++R G +V ++ + G+++ Sbjct: 67 ALDVADPIDGEYLLEVSTPGAERELTKVGHWMRQIGRLVRIKLRAGG----YVSGRVVAA 122 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 +ET ++ + I + + AR Sbjct: 123 NETSATIDVDGE--------TTIIDYQDMRKAR 147 >gi|56752081|ref|YP_172782.1| hypothetical protein syc2072_d [Synechococcus elongatus PCC 6301] gi|81300832|ref|YP_401040.1| hypothetical protein Synpcc7942_2023 [Synechococcus elongatus PCC 7942] gi|81561540|sp|Q5N0A8|RIMP_SYNP6 RecName: Full=Ribosome maturation factor rimP gi|123556488|sp|Q31LL6|RIMP_SYNE7 RecName: Full=Ribosome maturation factor rimP gi|56687040|dbj|BAD80262.1| hypothetical protein [Synechococcus elongatus PCC 6301] gi|81169713|gb|ABB58053.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942] Length = 153 Score = 81.2 bits (199), Expect = 7e-14, Method: Composition-based stats. Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 9/150 (6%) Query: 25 ISSVIQPVIEEMSFRSVQ-ISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I + +P+ +++ VQ + + +L++ + G+ L DCE +S++ LD Sbjct: 9 ILDLARPIADDLDLEVVQAVFHTNQSPPILRLDIRSRVGDTGLEDCERMSRSFELALDEA 68 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 NII Y LE+SSPG+ + DFL + G V + D + G ++G Sbjct: 69 NIIPDAYVLEISSPGLSDTLESDRDFLSFKGFPVQVTSRSPNDDTVEQQGTLLGRDADSV 128 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLI 173 +L K R + I+ +L +LI Sbjct: 129 YLNKRGR--------TVRIARSQVLEVKLI 150 >gi|308182570|ref|YP_003926697.1| Ribosome maturation factor rimP [Helicobacter pylori PeCan4] gi|308064755|gb|ADO06647.1| Ribosome maturation factor rimP [Helicobacter pylori PeCan4] Length = 146 Score = 81.2 bits (199), Expect = 7e-14, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKKIEEKIESVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEVISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + I+ Y LEVSS G++R + F G V ++ +K+ + + Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLT----NKESFQAVLKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E E K + + Sbjct: 117 DLSVDFELEDHAIKSVEYKDL 137 >gi|268678891|ref|YP_003303322.1| hypothetical protein Sdel_0250 [Sulfurospirillum deleyianum DSM 6946] gi|268616922|gb|ACZ11287.1| protein of unknown function DUF150 [Sulfurospirillum deleyianum DSM 6946] Length = 142 Score = 81.2 bits (199), Expect = 7e-14, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 14/147 (9%) Query: 26 SSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + + +IE ++ E + +I++ + + L C E+S+ +SPI DVE Sbjct: 4 TEQLIKIIESCGVSLYDTEVVSEFDKKIFRIYITSKE-GINLDKCAEVSRILSPIFDVEP 62 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 +EG Y EVSSPGI+R +++ F G V ++ +K+K IG + G + Sbjct: 63 PLEGEYLFEVSSPGIERKLLKPEHFSVSVGEKVKIKLK----NKEKFIGILEGFANNTLQ 118 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSAR 171 + E + I+ D + AR Sbjct: 119 VRVENEVK--------EIALDDIEKAR 137 >gi|210134596|ref|YP_002301035.1| hypothetical protein HPP12_0398 [Helicobacter pylori P12] gi|226706095|sp|B6JKX7|RIMP_HELP2 RecName: Full=Ribosome maturation factor rimP gi|210132564|gb|ACJ07555.1| hypothetical protein HPP12_0398 [Helicobacter pylori P12] Length = 146 Score = 81.2 bits (199), Expect = 7e-14, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 70/141 (49%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E + +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKRIEEKIEGVIESLGYLLYDVSLVKENEHNILRVSLKNPNGAVSLDICQQVSEIISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + I+ Y LEVSS G++R + F G V ++ +K+ + + Sbjct: 61 LDVCDFIQDAYILEVSSMGLERVLKTPKHFKLSLGEKVEVKLT----NKESFQAVLKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E E K + + Sbjct: 117 DWSADFELENHAIKSVEYKDL 137 >gi|88597399|ref|ZP_01100634.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni 84-25] gi|88190460|gb|EAQ94434.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni 84-25] Length = 147 Score = 80.8 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 17/150 (11%) Query: 29 IQPVIEEMSFRSVQISLLEEKNLLL-QIFVERD------DGNMTLRDCEELSQAISPILD 81 ++ + +E++ L E + +++V + + L DC LS+ +SPI D Sbjct: 3 LEALCKEVNLELYDSELTSENGKKIYRVYVMKPLDEKGERRGVNLDDCARLSEILSPIFD 62 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE + G Y LEVSS G++R + + F + +V G+K+K+ KI+ + Sbjct: 63 VEPPVSGEYFLEVSSAGLERKLSKIEHFAKSINELVKITT----GEKEKIEAKIISVEDE 118 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 LE + EK I+F+ + AR Sbjct: 119 NITLENLENKEKT------TINFNDIKKAR 142 >gi|284044672|ref|YP_003395012.1| hypothetical protein Cwoe_3218 [Conexibacter woesei DSM 14684] gi|283948893|gb|ADB51637.1| protein of unknown function DUF150 [Conexibacter woesei DSM 14684] Length = 139 Score = 80.8 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 61/151 (40%), Gaps = 16/151 (10%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I I+ + + + +++F++ D ++L CE ++ ++ Sbjct: 3 RIQEQIETTLSKTEPEVEVLLAEVLGGTTVRLFIDHPD-GVSLELCERVTHHLAG----- 56 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 I Y LEVSSPG +RP+ + + F R+ G + G + G+++G +E+ Sbjct: 57 --IRERYGLEVSSPGSERPLTKPAHFRRYLGQRARVRTRGAHGGQGSFTGELVGANESEV 114 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + +AI + + + L+ Sbjct: 115 TI--------AAETGVVAIPYTEIKRSNLVP 137 >gi|227499285|ref|ZP_03929397.1| protein of hypothetical function DUF150 [Anaerococcus tetradius ATCC 35098] gi|227218636|gb|EEI83870.1| protein of hypothetical function DUF150 [Anaerococcus tetradius ATCC 35098] Length = 147 Score = 80.8 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 62/142 (43%), Gaps = 4/142 (2%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 M L + + + IE M + V I KN + F + +T+ DCE+ S + Sbjct: 1 MNLTNRLKEIFERDIESMGYELVDIEFKGGKNNKVLTFFIYNKEGITIEDCEKASAFLDT 60 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LD +II+ Y LEVSS + RP+ D R ++ ++ + + K+ Sbjct: 61 KLDEIDIIKDSYYLEVSSQDLSRPLKTDRDLERNKDELLKVKLKDG----EVFLAKLKEI 116 Query: 139 SETGFFLEKEKRGEKDMNELQI 160 + + + E + +++ + +I Sbjct: 117 LDDSYIFDIEDKEAREVRKDEI 138 >gi|29829096|ref|NP_823730.1| hypothetical protein SAV_2554 [Streptomyces avermitilis MA-4680] gi|34223104|sp|Q82K50|RIMP_STRAW RecName: Full=Ribosome maturation factor rimP gi|29606202|dbj|BAC70265.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 169 Score = 80.8 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 69/154 (44%), Gaps = 9/154 (5%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++P++ I + + +L++ V+ D+ L ++S+A+S LD Sbjct: 7 ERLRELLEPLVGSQGLDLEGIEVESVGRKRVLRVVVDSDE-GADLDAIADVSRALSAKLD 65 Query: 82 VENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + + EG Y LEV +PG +R + ++R +V ++ L+ +I+ + Sbjct: 66 ETDAMGEGEYTLEVGTPGAERALTEHRHYVRAVDRLVRFQLTEGDE----LVARILTVDD 121 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G LE G K ++F+ + AR+ V Sbjct: 122 AGLDLEV--PGVKGRKATTRRLAFEDIAKARVQV 153 >gi|228473622|ref|ZP_04058374.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC 33624] gi|228274994|gb|EEK13804.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC 33624] Length = 154 Score = 80.8 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 39/160 (24%), Positives = 66/160 (41%), Gaps = 16/160 (10%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 M L + +I +EE + I K+ L+++ V+ D + + DC LS+AI Sbjct: 1 MNLKEKVKELIDKHLEE-NPSLFLIEYSIGKDNLIKVIVDG-DHGVNIDDCVALSRAIEH 58 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LD E + LEVSS GI P+ ++ + + G V + + IG I Sbjct: 59 NLDREE---EDFSLEVSSSGIFAPLTQERQYTKNIGREVEVKTATA-----THIGVIQEV 110 Query: 139 SETGFFLEKEKRGEKDMNELQIA------ISFDSLLSARL 172 S+ L+ R K + +I + + + A L Sbjct: 111 SDGKVTLQVTSRQPKPQGKGKITVTEQFSLPIEEIKEATL 150 >gi|303326258|ref|ZP_07356701.1| transcription elongation factor [Desulfovibrio sp. 3_1_syn3] gi|302864174|gb|EFL87105.1| transcription elongation factor [Desulfovibrio sp. 3_1_syn3] Length = 156 Score = 80.8 bits (198), Expect = 9e-14, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 51/127 (40%), Gaps = 17/127 (13%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDD-------------- 61 + L + + +PV+ + + +++ + +++FV+ Sbjct: 23 MSENALKETVIRLAEPVVRSLGLVIWGVEVVQAGRMAVRLFVDVPSGAPESLQAADGEEN 82 Query: 62 ---GNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVA 118 + ++ CEE+S+ + L+VE+ + Y LEVS+PG+ R + G +V Sbjct: 83 EAPTSASIGQCEEISRHLGLALEVEDAVPSAYVLEVSTPGLTRLFFSLDQMRPYLGDMVE 142 Query: 119 CEIVLSS 125 + Sbjct: 143 ARLHAPV 149 >gi|300772909|ref|ZP_07082778.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33861] gi|300759080|gb|EFK55907.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33861] Length = 156 Score = 80.8 bits (198), Expect = 9e-14, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 75/158 (47%), Gaps = 9/158 (5%) Query: 17 GDMGLAGDISSVI-QPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 + + ++ + + + V I + +L+I V+ D + + DC ++S+ Sbjct: 1 MKTKVEKRVEELVLEKIGDREDLFIVSIKMQSNG--VLEILVDG-DSGIAIDDCVKISRH 57 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 + L+ EN+IE YRLEVSSPGID P++ + + G V + +K GK+ Sbjct: 58 VGFHLEEENVIETAYRLEVSSPGIDSPLIMIRQYKKNIGRNVRVKNHEG----EKREGKL 113 Query: 136 MGTSETGFFLEKEKRGEKDMN-ELQIAISFDSLLSARL 172 + +E+ +E+ K+ + ++ I F+ + ++ Sbjct: 114 LNVTESNITIEESKKEKGKKAVPVESVIPFEQIKETKV 151 >gi|22536560|ref|NP_687411.1| hypothetical protein SAG0377 [Streptococcus agalactiae 2603V/R] gi|76786908|ref|YP_329097.1| hypothetical protein SAK_0451 [Streptococcus agalactiae A909] gi|76798054|ref|ZP_00780311.1| UPF0090 protein SP0552 (SP14.3) [Streptococcus agalactiae 18RS21] gi|77406351|ref|ZP_00783413.1| conserved hypotehtical protein [Streptococcus agalactiae H36B] gi|77408760|ref|ZP_00785490.1| conserved hypotehtical protein [Streptococcus agalactiae COH1] gi|77411665|ref|ZP_00788005.1| conserved hypotehtical protein [Streptococcus agalactiae CJB111] gi|77414448|ref|ZP_00790599.1| conserved hypotehtical protein [Streptococcus agalactiae 515] gi|91208361|sp|Q3K306|RIMP_STRA1 RecName: Full=Ribosome maturation factor rimP gi|22533394|gb|AAM99283.1|AE014208_23 conserved hypothetical protein [Streptococcus agalactiae 2603V/R] gi|76561965|gb|ABA44549.1| conserved hypothetical protein [Streptococcus agalactiae A909] gi|76586613|gb|EAO63114.1| UPF0090 protein SP0552 (SP14.3) [Streptococcus agalactiae 18RS21] gi|77159493|gb|EAO70653.1| conserved hypotehtical protein [Streptococcus agalactiae 515] gi|77162309|gb|EAO73280.1| conserved hypotehtical protein [Streptococcus agalactiae CJB111] gi|77172605|gb|EAO75744.1| conserved hypotehtical protein [Streptococcus agalactiae COH1] gi|77175020|gb|EAO77827.1| conserved hypotehtical protein [Streptococcus agalactiae H36B] Length = 127 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 7/129 (5%) Query: 48 EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD--VENIIEGHYRLEVSSPGIDRPMVR 105 + +L I +++ G +T+ D +L+ +SP+LD + Y LEVSSPG++RP+ Sbjct: 2 GGDYVLSILIDKP-GGITVEDTAQLTDVVSPLLDTIQPDPFPEQYMLEVSSPGLERPLKT 60 Query: 106 KSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFD 165 G + + S + G ++ ++ + + I + Sbjct: 61 AEALSNAVGSYINVSLYKSIDKVKIFEGDLLSFDGETLTIDYMDK----TRHKTVDIPYQ 116 Query: 166 SLLSARLIV 174 ++ ARL V Sbjct: 117 TVAKARLAV 125 >gi|325000942|ref|ZP_08122054.1| ribosome maturation protein RimP [Pseudonocardia sp. P1] Length = 209 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 70/167 (41%), Gaps = 14/167 (8%) Query: 14 RIFGDMGLAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDD----GNMTLRD 68 R LA + V++PV+ + + + + +++ V+ + + L D Sbjct: 16 RSPDPEQLADQLRGVLEPVVTDAGLEIDAVEVRTAGRRHAVKLVVDLPEASTATGIDLDD 75 Query: 69 CEELSQAISPIL-DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD 127 LS+ + L E++IEG Y LEV+SPGIDRP+ + R + + Sbjct: 76 IARLSRTAAAELDPHEHLIEGSYTLEVTSPGIDRPLTTPRHWRRNFLRLARITLAGGDD- 134 Query: 128 KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L +I + + R + ++ E I++D + A++ V Sbjct: 135 ---LEARIGRAGDDRVQVAVPGRKQPELRE----IAYDDVTHAQVQV 174 >gi|148243066|ref|YP_001228223.1| hypothetical protein SynRCC307_1967 [Synechococcus sp. RCC307] gi|147851376|emb|CAK28870.1| Conserved hypothetical protein [Synechococcus sp. RCC307] Length = 185 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 60/162 (37%), Gaps = 11/162 (6%) Query: 13 PRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVER--DDGNMTLRDCE 70 PR L I ++ + + F + L + I R D ++ L DC Sbjct: 28 PRALAHPPLE-PIEALASATAQSLGFLMESVVLHSHRAPQALIVAVRKGDGSDVNLDDCA 86 Query: 71 ELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 SQA L+ ++ G Y LE++SPG+ + + DF + G V + G + + Sbjct: 87 SFSQAFGEALETGELLTGAYVLEITSPGLGDVLQQDRDFRSFRGFPVCVRQRDAKGGEIQ 146 Query: 131 LIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G ++G L R + I +L RL Sbjct: 147 REGTLLGRDADAVELNLRGRIQ--------RIPRSDVLEVRL 180 >gi|255530055|ref|YP_003090427.1| hypothetical protein Phep_0139 [Pedobacter heparinus DSM 2366] gi|255343039|gb|ACU02365.1| protein of unknown function DUF150 [Pedobacter heparinus DSM 2366] Length = 154 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 78/156 (50%), Gaps = 9/156 (5%) Query: 19 MGLAGDISSVIQPVIEEM-SFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M + ++ +++ I + V++ +L L I V+ D+ ++++DC +S+ + Sbjct: 1 MQVEKRVTELVEEKISDRPELFLVEVKMLPNNK--LIIHVDGDE-GISIQDCAAISRHVG 57 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 L+ EN IE Y LEVSSPG+ P+ K +L+ G ++ ++ + GK++ Sbjct: 58 FHLEEENTIEKAYNLEVSSPGVGEPLKLKRQYLKNVGRELSVKL----DGGEVKEGKLLA 113 Query: 138 TSETGFFLEKE-KRGEKDMNELQIAISFDSLLSARL 172 E G +E + K K + ++ I F+ ++ ++ Sbjct: 114 ADEQGITIEAKIKEKGKKVQLVETRIDFNKIIETKV 149 >gi|326335428|ref|ZP_08201615.1| hypothetical protein HMPREF9071_1081 [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692194|gb|EGD34146.1| hypothetical protein HMPREF9071_1081 [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 154 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 66/162 (40%), Gaps = 16/162 (9%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 M L + +I ++E + I K L+++ ++ D + + DC LS+AI Sbjct: 1 MNLKERVKYLIDKALKE-NPSLFLIEYSIGKGNLIKVIIDG-DNGVNIDDCVILSRAIEH 58 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LD E + LEVSS GI P+ ++ +++ G V E K IG I Sbjct: 59 NLDREE---EDFSLEVSSCGIFAPLTQERQYIKNIGREVEIETTE-----TKYIGVIKEV 110 Query: 139 SETGFFLEKEKRGEKDMNE------LQIAISFDSLLSARLIV 174 E LE R K + I + +++ +L + Sbjct: 111 HEGKVSLEVTSRQPKANGKGKTTITETIVLPINNIKETKLKL 152 >gi|269792607|ref|YP_003317511.1| hypothetical protein Taci_0997 [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100242|gb|ACZ19229.1| protein of unknown function DUF150 [Thermanaerovibrio acidaminovorans DSM 6589] Length = 150 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 68/150 (45%), Gaps = 14/150 (9%) Query: 26 SSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILD--V 82 I+ ++E++ + V++ L+ + ++++ ++ D + DCE +S+ + +LD Sbjct: 10 KDRIRRLVEDLGYICVEVKLVRDLGGQVVRVTIDSPDAPIGHGDCEAVSRKVGELLDGEG 69 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E ++G Y LEVSSPG +RP++ DF R+ G + K++ + Sbjct: 70 EGFLKGRYYLEVSSPGPNRPLLSLDDFRRFKGSKIRVSTGK---GKKRTYFIDDVFDDGM 126 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARL 172 L E ++ + L + RL Sbjct: 127 VRLVHEGE--------ELVCPWGDLKNPRL 148 >gi|315123740|ref|YP_004065744.1| YlxS [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315017462|gb|ADT65555.1| YlxS [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 140 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 10/143 (6%) Query: 29 IQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEG 88 ++ + +E L+ E + + +G + L DC LS+ +SPI DVE + G Sbjct: 3 LEALCKEAELSFYDDELVSENGRKIYRIYVQKEGGVNLDDCARLSEILSPIFDVEPPVNG 62 Query: 89 HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKE 148 Y LEVSSPG++R + R F + G +V +K+K KI+ + LE Sbjct: 63 EYFLEVSSPGLERKLSRIEHFAKSIGELVKITT----NEKEKFEAKIIAVDDENITLENL 118 Query: 149 KRGEKDMNELQIAISFDSLLSAR 171 + EK I+F+ + AR Sbjct: 119 ENKEKT------TINFNDIKKAR 135 >gi|293192165|ref|ZP_06609377.1| hypothetical protein HMPREF0970_01722 [Actinomyces odontolyticus F0309] gi|292820361|gb|EFF79353.1| hypothetical protein HMPREF0970_01722 [Actinomyces odontolyticus F0309] Length = 156 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 66/153 (43%), Gaps = 15/153 (9%) Query: 22 AGDISSVIQPVIEEMSFRSVQI-SLLEEKNLLLQIFVERD--DGNMTLRDCEELSQAISP 78 G + ++ PV+ + + + LL++ VE G + E+S+A+S Sbjct: 7 EGPLEELLTPVVAQSGLELDSVIRSRSDAMPLLRVIVEAPIGAGGIDSDTLAEVSRAVSK 66 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LD + I+G Y LEVS+PG +R + + ++R G +V ++ + G+++ Sbjct: 67 ALDAADPIDGEYLLEVSTPGAERELTKVGHWMRQIGRLVRIKLRAGG----YVSGRVVAA 122 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 ET ++ + I + + AR Sbjct: 123 DETSATIDVDGE--------TTIIDYQDMRKAR 147 >gi|317009046|gb|ADU79626.1| Ribosome maturation factor rimP [Helicobacter pylori India7] Length = 146 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 70/141 (49%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKKIEEKIEGVIESLGYLLYDVSLVKENEQHILRVSLKNPNGAVSLDICQQVSEIISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + I+ Y LEVSS G++R + F G V ++ +K+ + + Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLT----NKESFQAVLKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E E R K + + Sbjct: 117 DLSADFELEDRAVKSVEYKDL 137 >gi|331698437|ref|YP_004334676.1| ribosome maturation factor rimP [Pseudonocardia dioxanivorans CB1190] gi|326953126|gb|AEA26823.1| Ribosome maturation factor rimP [Pseudonocardia dioxanivorans CB1190] Length = 176 Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 37/160 (23%), Positives = 69/160 (43%), Gaps = 16/160 (10%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDG--NMTLRDCEE 71 + L + V++P++ F ++ + + +++ V+ D + L D Sbjct: 1 MPTPDQLGRQLQDVLEPIVAGAGFELDELDVRATGRRHTVKVVVDSADEAAGVNLDDIAR 60 Query: 72 LSQAISPILDV-ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 LS+A S LD E++I G Y LEV+SPGIDRP+ + + R +V +V K Sbjct: 61 LSRAASAELDQHEHLIGGSYTLEVTSPGIDRPLTQPRHWRRAYLRLVEVTLVEGG----K 116 Query: 131 LIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 L G+I E + + ++++ + A Sbjct: 117 LAGRIGRAGEDAVDVLVDGSVR--------SVAYADVAKA 148 >gi|207093098|ref|ZP_03240885.1| hypothetical protein HpylHP_09959 [Helicobacter pylori HPKX_438_AG0C1] Length = 146 Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKRIEEKIEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + I+ Y LEVSS G++R + F G V ++ +K+ + + Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLT----NKESFQAVLKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E E K + + Sbjct: 117 DLSADFELEDHAVKSVEYKDL 137 >gi|297202731|ref|ZP_06920128.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083] gi|297148178|gb|EFH28865.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083] Length = 165 Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 69/154 (44%), Gaps = 9/154 (5%) Query: 23 GDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++P++ +I++ + +L++ V+ D L ++S+A+S LD Sbjct: 7 ERLRELLEPLVTSQGLDLEEIAVDSVGRKRVLRVVVDS-DTGADLDQIADVSRALSAKLD 65 Query: 82 VENIIE-GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + + G Y LEV +PG +R + ++R +V ++ L+ +I+ + Sbjct: 66 ESDAMGAGEYTLEVGTPGAERLLKEHRHYVRAVSRLVKFQLTEGGE----LVARILKVDD 121 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G L+ E G K ++F + AR+ V Sbjct: 122 DG--LDVEVPGVKGRKATARRLAFSEVDKARVQV 153 >gi|257066113|ref|YP_003152369.1| hypothetical protein Apre_0606 [Anaerococcus prevotii DSM 20548] gi|256797993|gb|ACV28648.1| protein of unknown function DUF150 [Anaerococcus prevotii DSM 20548] Length = 147 Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 34/142 (23%), Positives = 63/142 (44%), Gaps = 4/142 (2%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 M L + + + IE + + V I +KN + F + +T+ DCE++S + Sbjct: 1 MDLTKRLKEIFEADIENLGYELVDIEFKGQKNNKILTFFIYNKDGITIEDCEKVSAFLDE 60 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LD +II+ Y LEVSS + RP+ D R ++ ++ + +GKI+ Sbjct: 61 KLDEIDIIKDSYYLEVSSQDLSRPIKTDRDLERNKDELLKIKLKDG----EIFLGKIINI 116 Query: 139 SETGFFLEKEKRGEKDMNELQI 160 E + E K++ + + Sbjct: 117 GEDFYEFILEDENTKNIKKEDV 138 >gi|47095906|ref|ZP_00233509.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a F6854] gi|47015652|gb|EAL06582.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a F6854] Length = 101 Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 4/102 (3%) Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+ +S +D + I +Y LEVSSPG +RP+ ++ DF V ++ Sbjct: 1 MSEKVSEKMDENDPITQNYFLEVSSPGAERPLKKEQDFENAVSKYVHVTSYEPIDGRKMW 60 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 G ++ T + + K E I D + ARL Sbjct: 61 EGTLVSYDGTTLVITITDKTRKITCE----IPKDKVAKARLA 98 >gi|86153804|ref|ZP_01072007.1| YlxS [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842765|gb|EAQ59977.1| YlxS [Campylobacter jejuni subsp. jejuni HB93-13] Length = 140 Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 10/143 (6%) Query: 29 IQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEG 88 ++ + +E L+ E + + +G + L DC LS+ +SPI DVE + G Sbjct: 3 LEALCKEAELSFYDDELVSENGRKIYRIYVQKEGGVNLDDCARLSEILSPIFDVEPPVNG 62 Query: 89 HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKE 148 Y LEVSSPG++R + + F + G +V +K+K KI+ + LE Sbjct: 63 EYFLEVSSPGLERKLSKIEHFAKSIGELVKITT----NEKEKFEAKIIAVDDENITLENL 118 Query: 149 KRGEKDMNELQIAISFDSLLSAR 171 + EK I+F+ + AR Sbjct: 119 ENKEKT------TINFNDIKKAR 135 >gi|298345266|ref|YP_003717953.1| hypothetical protein HMPREF0573_10140 [Mobiluncus curtisii ATCC 43063] gi|315655686|ref|ZP_07908584.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333] gi|298235327|gb|ADI66459.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 43063] gi|315489750|gb|EFU79377.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333] Length = 197 Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 66/170 (38%), Gaps = 17/170 (10%) Query: 7 LHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDD--GN 63 + ++ +P D + I V+ PV+E +I++ K+ ++ I ++ D N Sbjct: 25 ITTEAQPHTSTDPSVEA-IIQVVNPVVEAAGLYLEKIAVTGPKHQRVVAISLDLPDGVDN 83 Query: 64 MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVL 123 + E+ S+AI LD + + G Y LE+S+ G + + R G V Sbjct: 84 LGSAQLEDASRAIGAALDAADPLSGAYTLEISTLGAEHELTNLRLARRALGKDVEVRT-- 141 Query: 124 SSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 Q G + +ETG + + F+ + S R + Sbjct: 142 ---GGQVRAGILTEVTETGLSVNDDGDVTVY--------PFEDIESVRTV 180 >gi|224438171|ref|ZP_03659106.1| hypothetical protein HcinC1_09335 [Helicobacter cinaedi CCUG 18818] gi|313144616|ref|ZP_07806809.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] gi|313129647|gb|EFR47264.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] Length = 156 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 23/165 (13%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVER----------DDGNMTLRDC 69 L+ + I+ + +S I L+E +L+I + + D ++L+DC Sbjct: 2 LSAQTTQKIERLAASLSLYIYDIDFLKEDERHILRISITKKAPMQNLSSKDSNAVSLQDC 61 Query: 70 EELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ 129 + LS+ +SP+LDVE+I +Y LEVSSPG+DR + + + G +++ +++ K Sbjct: 62 QILSELLSPLLDVEHINMDNYHLEVSSPGLDRILKKPQHYAFSLGEMISLKLID----KS 117 Query: 130 KLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L G + ++T L +K I I F S+ A++I Sbjct: 118 SLQGILENVNDTEIALLVDKEK--------INIPFSSIKKAKVIF 154 >gi|325067075|ref|ZP_08125748.1| ribosome maturation protein RimP [Actinomyces oris K20] Length = 172 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 74/171 (43%), Gaps = 10/171 (5%) Query: 8 HSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDG--NM 64 + +PR D LA ++ ++ P++ + + K ++++FV+ DG ++ Sbjct: 5 DQRKDPRQRAD-ALARSLADLLSPIVNDAGLHLESVETTRAGKYSVVRVFVDLLDGPGDL 63 Query: 65 TLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS 124 L ++ AIS LD + ++G Y LEVS+PG +R + F R GH Sbjct: 64 DLDALGPVTAAISQALDEADPVKGQYTLEVSTPGAERELTTLRHFRRAVGHSARVRTADD 123 Query: 125 SGDKQKLIGKIMGTSETGFFLEKEKRGEK-DMNELQIAISFDSLLSARLIV 174 +L G + E + +++ ++ I+ + AR+++ Sbjct: 124 -----ELTGVVTAAEEDDEASDHNGGMVGIEVDGVERRIALGDITEARMVL 169 >gi|121613126|ref|YP_999862.1| hypothetical protein CJJ81176_0173 [Campylobacter jejuni subsp. jejuni 81-176] gi|167004833|ref|ZP_02270591.1| hypothetical protein Cjejjejuni_00785 [Campylobacter jejuni subsp. jejuni 81-176] gi|166980215|sp|A1VXM1|RIMP_CAMJJ RecName: Full=Ribosome maturation factor rimP gi|87250144|gb|EAQ73102.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni 81-176] Length = 140 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 10/143 (6%) Query: 29 IQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEG 88 ++ + +E L+ E + + +G + L DC LS+ +SPI DVE + G Sbjct: 3 LEALCKEAELSFYDDELVSENGRKIYRIYVQKEGGVNLDDCARLSEILSPIFDVEPPVNG 62 Query: 89 HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKE 148 Y LEVSSPG++R + + F + G +V +K+K KI+ + LE Sbjct: 63 EYFLEVSSPGLERKLSKIEHFAKSIGELVKITT----NEKEKFEAKIIAVDDENITLENL 118 Query: 149 KRGEKDMNELQIAISFDSLLSAR 171 + EK I+F+ + AR Sbjct: 119 ENKEKT------TINFNDIKKAR 135 >gi|326333614|ref|ZP_08199852.1| hypothetical protein NBCG_05048 [Nocardioidaceae bacterium Broad-1] gi|325948595|gb|EGD40697.1| hypothetical protein NBCG_05048 [Nocardioidaceae bacterium Broad-1] Length = 166 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 68/159 (42%), Gaps = 11/159 (6%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQA 75 +A I + ++ + + + K +L+I V++ DG +T + E ++ Sbjct: 11 RKDAIASAIDKALADPLQALGLDIEAVEITPAGKRRILRIAVDK-DGGITHEEVTEATRE 69 Query: 76 ISPILDVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 ++ +LD +++ E Y LEV+SPG+DRP+ + R G +V S G+ Sbjct: 70 VNRVLDESDVMGEQPYTLEVTSPGVDRPLTLPRHWRRNKGRLVKVTATDGS----TFTGR 125 Query: 135 IMGTSETGFFLEKEKR----GEKDMNELQIAISFDSLLS 169 + + E LE + D+ + + I F + Sbjct: 126 VKESDEDRVSLEVSGKRREVAYADVKKALVQIEFKRIDE 164 >gi|86151421|ref|ZP_01069636.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni 260.94] gi|85841768|gb|EAQ59015.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni 260.94] Length = 140 Score = 79.7 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 10/143 (6%) Query: 29 IQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEG 88 ++ + +E L+ E + + +G + L DC LS+ +SPI DVE + G Sbjct: 3 LEALCKEAELSFYDDELVSENGRKIYRIYVQKEGGVNLDDCARLSEILSPIFDVEPPVNG 62 Query: 89 HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKE 148 Y LEVSSPG++R + + F + G +V +K+K KI+ + LE Sbjct: 63 EYFLEVSSPGLERKLSKIEHFAKSIGELVKITT----NEKEKFEAKIIAVDDENITLENL 118 Query: 149 KRGEKDMNELQIAISFDSLLSAR 171 + EK I+F+ + A+ Sbjct: 119 ENKEKT------TINFNDIKKAK 135 >gi|313676537|ref|YP_004054533.1| hypothetical protein Ftrac_2447 [Marivirga tractuosa DSM 4126] gi|312943235|gb|ADR22425.1| protein of unknown function DUF150 [Marivirga tractuosa DSM 4126] Length = 157 Score = 79.7 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 78/157 (49%), Gaps = 7/157 (4%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 GL I + + +I E + V I + L + + ++ D+ +++ C +S+ ++ Sbjct: 3 GLDEKIKAYLGEIITEPQYFIVDIVISGNDKLKIVVLLDGDE-GVSIDYCASVSRQLAHR 61 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 ++ + ++E Y LEVSSPG+D P+ +L+ G V + + + G+++ Sbjct: 62 MEEDEVLEKAYVLEVSSPGLDHPLTNLRQYLKNIGRKVKVDTTDG----KAIRGELLEAK 117 Query: 140 ETGFFLE--KEKRGEKDMNELQIAISFDSLLSARLIV 174 E + +++G+K + + +SF+++ +++V Sbjct: 118 EDFILVNQEIKEKGKKKIKLEETKVSFENIDKTKVLV 154 >gi|259585703|sp|B8HG52|RIMP_ARTCA RecName: Full=Ribosome maturation factor rimP Length = 205 Score = 79.7 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 69/159 (43%), Gaps = 12/159 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDG---NMTLRDCEELSQAIS 77 A + ++++P + + + + + ++ + V+ ++L ++S+ +S Sbjct: 28 ADRLRALLEPSVLANRLYLEDVVINVAGSHRVVHVVVDLPQEETGGVSLDVIADISKVLS 87 Query: 78 PILDVEN-IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 LD + Y LEVSSPG+ RP+ + R G + +++ + + G+I Sbjct: 88 DALDNDPGADTRPYDLEVSSPGVGRPLTEPRHWHRAKGRIATVKVIQG----ENVTGRIQ 143 Query: 137 GTSETGFFLEKE---KRGEKDMNELQIAISFDSLLSARL 172 + G L E K+G K + + FD + + ++ Sbjct: 144 SVDDGGVTLVPEIAVKKGMKPKQGDPVKLPFDRIRTGKV 182 >gi|57168691|ref|ZP_00367823.1| conserved hypothetical protein [Campylobacter coli RM2228] gi|305432680|ref|ZP_07401841.1| conserved hypothetical protein [Campylobacter coli JV20] gi|57019972|gb|EAL56652.1| conserved hypothetical protein [Campylobacter coli RM2228] gi|304444391|gb|EFM37043.1| conserved hypothetical protein [Campylobacter coli JV20] Length = 147 Score = 79.7 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 17/150 (11%) Query: 29 IQPVIEEMSFRSVQISLLEEKNLLL-QIFVERD------DGNMTLRDCEELSQAISPILD 81 ++ + +E++ L E + +++V + + L DC LS+ +SPI D Sbjct: 3 LEALCKEVNLELYDSELTSENGKKIYRVYVMKPLDEKGERRGVNLDDCARLSEILSPIFD 62 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE + G Y LEVSS G++R + + F + +V G+K+K+ KI+ + Sbjct: 63 VEPPVSGEYFLEVSSAGLERKLSKIEHFAKSINELVKITT----GEKEKIEAKIISVEDE 118 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 LE + EK + F + AR Sbjct: 119 NITLENLENQEKT------TLKFSDIKKAR 142 >gi|259585814|sp|B5Z6E8|RIMP_HELPG RecName: Full=Ribosome maturation factor rimP Length = 146 Score = 79.7 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKKIEEKIEGVIESLGYLLYDVSLVKENEQHILRVSLKNPNGAVSLDICQQVSEIISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + I+ Y LEVSS G++R + F G V ++ +K+ + + Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLT----NKESFQAVLKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E E K + + Sbjct: 117 DLSADFELEDHAIKSVEYKDL 137 >gi|220912194|ref|YP_002487503.1| hypothetical protein Achl_1424 [Arthrobacter chlorophenolicus A6] gi|219859072|gb|ACL39414.1| protein of unknown function DUF150 [Arthrobacter chlorophenolicus A6] Length = 222 Score = 79.7 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 69/159 (43%), Gaps = 12/159 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDG---NMTLRDCEELSQAIS 77 A + ++++P + + + + + ++ + V+ ++L ++S+ +S Sbjct: 45 ADRLRALLEPSVLANRLYLEDVVINVAGSHRVVHVVVDLPQEETGGVSLDVIADISKVLS 104 Query: 78 PILDVEN-IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 LD + Y LEVSSPG+ RP+ + R G + +++ + + G+I Sbjct: 105 DALDNDPGADTRPYDLEVSSPGVGRPLTEPRHWHRAKGRIATVKVIQG----ENVTGRIQ 160 Query: 137 GTSETGFFLEKE---KRGEKDMNELQIAISFDSLLSARL 172 + G L E K+G K + + FD + + ++ Sbjct: 161 SVDDGGVTLVPEIAVKKGMKPKQGDPVKLPFDRIRTGKV 199 >gi|109947687|ref|YP_664915.1| hypothetical protein Hac_1157 [Helicobacter acinonychis str. Sheeba] gi|122973267|sp|Q17WR0|RIMP_HELAH RecName: Full=Ribosome maturation factor rimP gi|109714908|emb|CAJ99916.1| conserved hypothetical protein [Helicobacter acinonychis str. Sheeba] Length = 146 Score = 79.7 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 71/141 (50%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E +L++ ++ +G ++L +C+++S+ ISP+ Sbjct: 1 MTKRIEERIEGVIESLGYLLYDVSLIKESEQHILRVSLKNPNGAVSLDNCQQVSEIISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + ++ Y LEVSS G++R + F G VA ++ +KQ + + Sbjct: 61 LDVCDFLKDAYILEVSSMGLERTLKTPKHFKLSLGEKVAVKL----MNKQSFQAILKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E E K + + Sbjct: 117 DLSVDFELENHTIKSVEYKDL 137 >gi|311898672|dbj|BAJ31080.1| hypothetical protein KSE_53040 [Kitasatospora setae KM-6054] Length = 184 Score = 79.7 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 68/160 (42%), Gaps = 8/160 (5%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQA 75 + ++++P+ + ++ + +QI V+ DG + L E S+ Sbjct: 1 MSTTPTDRLRALLEPLAADAGLDLEEVKVTQAGSRRQVQIDVD-ADGGVDLDAVAEFSRL 59 Query: 76 ISPILDVENIIEG-HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 +S LD ++ Y LEV SPG +RP+ + R G + A ++V + L + Sbjct: 60 VSRALDDSALMGETPYVLEVGSPGAERPLSEPRHWRRAVGRLAAVKLVDGAE----LTAR 115 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ + E G +E + + + + F + AR+ V Sbjct: 116 VLESDEDGALVEV-QPVKGRGRPKERRLEFAEVARARVQV 154 >gi|319744371|gb|EFV96731.1| hypothetical protein containing DUF150 [Streptococcus agalactiae ATCC 13813] Length = 127 Score = 79.7 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 7/129 (5%) Query: 48 EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD--VENIIEGHYRLEVSSPGIDRPMVR 105 + +L I +++ G +T+ D +L+ +SP+LD + Y LEVSSPG++RP+ Sbjct: 2 GGDYVLSILIDKP-GGITVEDTVQLTDVVSPLLDTIQPDPFPEQYMLEVSSPGLERPLKT 60 Query: 106 KSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFD 165 G + + S + G ++ ++ + + I + Sbjct: 61 AEALSNAVGSYINVSLYKSIDKVKIFEGDLLSFDGETLTIDYMDK----TRHKTVDIPYQ 116 Query: 166 SLLSARLIV 174 ++ ARL V Sbjct: 117 TVAKARLAV 125 >gi|148926309|ref|ZP_01809993.1| hypothetical protein Cj8486_0133 [Campylobacter jejuni subsp. jejuni CG8486] gi|145844701|gb|EDK21806.1| hypothetical protein Cj8486_0133 [Campylobacter jejuni subsp. jejuni CG8486] Length = 140 Score = 79.7 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 10/143 (6%) Query: 29 IQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEG 88 ++ + +E L+ E + + +G + L DC LS+ +SPI DVE + G Sbjct: 3 LEALCKEAELSFYDDELVSENGRKIYRIYVQKEGGVNLDDCARLSEILSPIFDVEPPVNG 62 Query: 89 HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKE 148 Y LEVSSPG++R + + F + G +V +K+K+ KI+ + LE Sbjct: 63 EYFLEVSSPGLERKLSKIEHFAKSIGELVKITT----NEKEKIEAKIIAVDDENITLENL 118 Query: 149 KRGEKDMNELQIAISFDSLLSAR 171 + EK I+F+ + AR Sbjct: 119 ENKEKT------TINFNDIKKAR 135 >gi|224419195|ref|ZP_03657201.1| hypothetical protein HcanM9_07971 [Helicobacter canadensis MIT 98-5491] gi|253828125|ref|ZP_04871010.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313142699|ref|ZP_07804892.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|253511531|gb|EES90190.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313131730|gb|EFR49347.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] Length = 143 Score = 79.7 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 47/153 (30%), Positives = 77/153 (50%), Gaps = 17/153 (11%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 M ++ D+ + IQ ++E + I L+E N +L+IFV + +++L DC+E+S A+S Sbjct: 1 MLISQDLQTKIQKLVESFDCKLYDIVTLKENDNQILRIFVTKK-SSVSLDDCQEISLALS 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 P+LDVE Y LEVSSPGI+R + K + G ++ + K++ GK++ Sbjct: 60 PLLDVEIPESKSYFLEVSSPGIERTLKTKEHYCDAIGELLKVKTFA----KEEFKGKLLA 115 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 + LE I I DS+ A Sbjct: 116 VNSDNLELE-----------NNIIIPLDSIKKA 137 >gi|261839249|gb|ACX99014.1| hypothetical protein HPKB_0406 [Helicobacter pylori 52] Length = 146 Score = 79.7 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKKIEEKIEGVIESLGYLLYDVSLIKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + I+ Y LEVSS G++R + F G V ++ +K+ + + Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLT----NKESFQAVLKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E E K + + Sbjct: 117 DLSADFELEDHATKSVEYKDL 137 >gi|283955315|ref|ZP_06372815.1| hypothetical protein C414_000440054 [Campylobacter jejuni subsp. jejuni 414] gi|283793229|gb|EFC31998.1| hypothetical protein C414_000440054 [Campylobacter jejuni subsp. jejuni 414] Length = 147 Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 41/150 (27%), Positives = 67/150 (44%), Gaps = 17/150 (11%) Query: 29 IQPVIEEMSFRSVQISLLEEKNLLL-QIFVERD------DGNMTLRDCEELSQAISPILD 81 ++ + +E + L E + ++FV + + L DC LS+ +SPI D Sbjct: 3 LEALCKEANLELYDSELTSENGKKIYRVFVMKPLDEKGQRVGVNLDDCARLSEILSPIFD 62 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 VE + G Y LEVSSPG++R + + F + G +V +K+K+ KIM + Sbjct: 63 VEPPVNGEYFLEVSSPGLERKLGKIEHFAKSIGELVKITT----NEKEKIEAKIMSVEDE 118 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 LE + EK + F + AR Sbjct: 119 NIILENLENQEKT------TLKFSDIKKAR 142 >gi|152993548|ref|YP_001359269.1| hypothetical protein SUN_1969 [Sulfurovum sp. NBC37-1] gi|166980517|sp|A6QBQ3|RIMP_SULNB RecName: Full=Ribosome maturation factor rimP gi|151425409|dbj|BAF72912.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 142 Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 8/134 (5%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 M L IS + +E I E + + + G + L C +S +SP Sbjct: 1 MNLEAQISKI----VEANGAALYDIETANEFDETIYRVLITKTGGVNLDLCATISNELSP 56 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LDV + GHYRLEVSSPGI+R + + F G V +++ KL G + Sbjct: 57 FLDVHPPMNGHYRLEVSSPGIERKLSKPIHFQNAIGEKVKVKLL----GGDKLKGVLKAA 112 Query: 139 SETGFFLEKEKRGE 152 + G +E ++ E Sbjct: 113 DDKGITVETKQGEE 126 >gi|317012240|gb|ADU82848.1| Ribosome maturation factor rimP [Helicobacter pylori Lithuania75] Length = 146 Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 68/141 (48%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E +L++ ++ +G + L C+++S+ ISP+ Sbjct: 1 MTKRIEEKIEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVNLDICQQVSEIISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + I+ Y LEVSS G++R + F G V ++ +K+ + + Sbjct: 61 LDVCDFIQDAYILEVSSMGLERVLKTPKHFKLSLGEKVEVKLT----NKESFQAVLKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E E K + + Sbjct: 117 DLSADFELEDHAIKSVEYKDL 137 >gi|302554521|ref|ZP_07306863.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM 40736] gi|302472139|gb|EFL35232.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM 40736] Length = 169 Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 72/154 (46%), Gaps = 9/154 (5%) Query: 23 GDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++P++ +I++ + +L++ V+ D L ++S+A+S LD Sbjct: 7 ERLRELLEPLVNSQGLDLDEIAVDSVGRKRVLRVVVDS-DTGADLDRIADVSRALSAKLD 65 Query: 82 VENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + + EG Y LEV +PG +RP+ ++R +V ++ L+ +I+ + Sbjct: 66 ETDAMGEGEYTLEVGTPGAERPLTEHRHYVRATDRLVKFQLAEGDE----LVARILKVDD 121 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G + E G K I+FD ++ AR+ V Sbjct: 122 EGV--DAEVPGVKGRKATARRIAFDDIVRARVQV 153 >gi|317180703|dbj|BAJ58489.1| hypothetical protein HPF32_0907 [Helicobacter pylori F32] Length = 146 Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKKIEEKIEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEVISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + I+ Y LEVSS G++R + F G V ++ +K+ + + Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLT----NKESFQAVLKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E E K + + Sbjct: 117 DLSADFELEDHAIKSVEYKDL 137 >gi|87125355|ref|ZP_01081201.1| hypothetical protein RS9917_08055 [Synechococcus sp. RS9917] gi|86167124|gb|EAQ68385.1| hypothetical protein RS9917_08055 [Synechococcus sp. RS9917] Length = 155 Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 62/143 (43%), Gaps = 2/143 (1%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDD-GNMTLRDCEELSQAISPILD 81 D+++V + F + ++ + + LQI + R + +++L DC LS + +D Sbjct: 8 DLTAVAASTAQAHGFELADVQVMTHLQPMTLQIQIRRSNGDDVSLDDCARLSAPMGDAID 67 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + Y LE+SSPGI + DF + + + G +Q+ G ++ ++ Sbjct: 68 NAALPIEAYVLEISSPGIGDQLQTDRDFRTFRSYPIEVIYRDDEGGEQRQQGSLLERTDE 127 Query: 142 GFFLEKEKRGEKDMNELQIAISF 164 L R ++ + IA+ Sbjct: 128 HIHLNVRGRIKRISRQAVIAVQL 150 >gi|317179205|dbj|BAJ56993.1| hypothetical protein HPF30_0896 [Helicobacter pylori F30] Length = 146 Score = 79.3 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 70/141 (49%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKKIEEKIEGVIESLGYLLYDVSLIKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + I+ Y LEVSS G++R + F G V ++ +K+ + + Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLT----NKESFQAVLKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E E R K + + Sbjct: 117 DLSADFELEDRAIKSVEYKDL 137 >gi|301167103|emb|CBW26682.1| conserved hypothetical protein [Bacteriovorax marinus SJ] Length = 172 Score = 79.3 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 68/167 (40%), Gaps = 22/167 (13%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTL-RDCEELSQAIS 77 G+ + + EE+ + L+ + L++F+ + + +C +L +A++ Sbjct: 8 TGVEKKFYELCSRLCEELGLEIYDLDYLKGSH-TLRVFIMNPETKTAVLEECSKLDRALT 66 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV------------LSS 125 P ++ E + LEVSSPG+ R + + F + I S Sbjct: 67 PYIEEEEWMPSELTLEVSSPGMFRHLSKIEHFEMSLEEDIQFTIRARLTQDLFPGIPKSL 126 Query: 126 GDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++K++GK++ +E + ++ ++ + ++ + A L Sbjct: 127 QGERKILGKLLKVTEETITVL--------SHDYELTLKYEDIKKANL 165 >gi|217031630|ref|ZP_03437135.1| hypothetical protein HPB128_21g188 [Helicobacter pylori B128] gi|298736659|ref|YP_003729185.1| hypothetical protein HPB8_1164 [Helicobacter pylori B8] gi|216946830|gb|EEC25426.1| hypothetical protein HPB128_21g188 [Helicobacter pylori B128] gi|298355849|emb|CBI66721.1| conserved hypothetical protein [Helicobacter pylori B8] Length = 146 Score = 79.3 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 71/141 (50%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKRIEEKIEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEVISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + I+ Y LEVSS G++R + F G V +++ +K+ + + Sbjct: 61 LDVCDFIQDAYTLEVSSMGLERTLKTPKHFKLSLGEKVEVKLI----NKESFQAVLKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E E K++ + Sbjct: 117 DLSADFELEDHAIKNVEYKDL 137 >gi|257055489|ref|YP_003133321.1| hypothetical protein Svir_14540 [Saccharomonospora viridis DSM 43017] gi|256585361|gb|ACU96494.1| uncharacterized conserved protein [Saccharomonospora viridis DSM 43017] Length = 179 Score = 78.9 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 58/155 (37%), Gaps = 13/155 (8%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAI 76 LA + ++ + F + + + L V D + L E+S+A+ Sbjct: 1 MPNELASRLEPLVAEAVGAAGFDLDALDVQQAGRRKLVKVVVDGDEGVELDKVAEISRAV 60 Query: 77 SPILDVEN-IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 S +LD + +I G Y LEV+SPG+DRP+ + + R +V IG++ Sbjct: 61 SAVLDQHDHLIAGAYTLEVTSPGLDRPLTKPRHWRRSRNRLVRVTPKEGPA----YIGRV 116 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 E + + + + + A Sbjct: 117 GAAGEDSVRILVDGEIRD--------LRYADVRKA 143 >gi|113954072|ref|YP_731567.1| hypothetical protein sync_2370 [Synechococcus sp. CC9311] gi|123327605|sp|Q0I7K5|RIMP_SYNS3 RecName: Full=Ribosome maturation factor rimP gi|113881423|gb|ABI46381.1| DUF150 [Synechococcus sp. CC9311] Length = 157 Score = 78.9 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 60/145 (41%), Gaps = 2/145 (1%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDD-GNMTLRDCEELSQAISPILD 81 D+ + + F + +L + + +QI + R ++TL DC S + L+ Sbjct: 10 DLKDLASATAVDHGFELADLQVLAHMQPMTVQIQIRRSSGDDVTLDDCAAFSAPMGEALE 69 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 ++ Y LE+SSPGI + DF + + V G +QK G ++ +E Sbjct: 70 NSAVLNEAYVLEISSPGIGDHLQSDRDFQTFRRYPVDVIHRDPDGAEQKHSGTLLERTEN 129 Query: 142 GFFLEKEKRGEKDMNELQIAISFDS 166 + R ++ + +++ + Sbjct: 130 HLKISIHGRIKQIPRDSILSVELTN 154 >gi|188527211|ref|YP_001909898.1| hypothetical protein HPSH_02090 [Helicobacter pylori Shi470] gi|226701161|sp|B2USN6|RIMP_HELPS RecName: Full=Ribosome maturation factor rimP gi|188143451|gb|ACD47868.1| hypothetical protein HPSH_02090 [Helicobacter pylori Shi470] gi|261837834|gb|ACX97600.1| hypothetical protein KHP_0389 [Helicobacter pylori 51] gi|297379622|gb|ADI34509.1| UPF0090 protein [Helicobacter pylori v225d] gi|308061753|gb|ADO03641.1| Ribosome maturation factor rimP [Helicobacter pylori Cuz20] gi|308063263|gb|ADO05150.1| Ribosome maturation factor rimP [Helicobacter pylori Sat464] Length = 146 Score = 78.9 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKKIEEKIEGVIESLGYLLYDVSLIKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + I+ Y LEVSS G++R + F G V ++ +K+ + + Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLT----NKESFQAVLKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E E K + + Sbjct: 117 DLSADFELEDHAIKSVEYKDL 137 >gi|15611447|ref|NP_223098.1| hypothetical protein jhp0379 [Helicobacter pylori J99] gi|6648012|sp|Q9ZM44|RIMP_HELPJ RecName: Full=Ribosome maturation factor rimP gi|4154909|gb|AAD05958.1| putative [Helicobacter pylori J99] Length = 146 Score = 78.9 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 70/141 (49%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKKIEEKIEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + I+ Y LEVSS G++R + F G V +++ +K+ + + Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLI----NKESFQAVLKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E + K + + Sbjct: 117 DLSADFELDNHAIKSVEYKDL 137 >gi|255033850|ref|YP_003084471.1| hypothetical protein Dfer_0034 [Dyadobacter fermentans DSM 18053] gi|254946606|gb|ACT91306.1| protein of unknown function DUF150 [Dyadobacter fermentans DSM 18053] Length = 160 Score = 78.9 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 70/158 (44%), Gaps = 11/158 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 M + + ++ P++E+ V I++ K + + I V+ D+ +T++ C +S+ ++ Sbjct: 1 MTVKEHLEVLLAPLLEDGDCFLVDIAIKPSKLSQKVTILVDSDE-GITIQQCTSISRRLA 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 L+ + Y LEVSSPG+D+P++ + + G + + + L G + Sbjct: 60 KQLEELEVFTQAYTLEVSSPGLDQPLLLPRQYKKNVGRNLKITLKSG----EILQGTLTD 115 Query: 138 TSETGFFLEKEKRGEKDMNELQ-----IAISFDSLLSA 170 ++ ++ +K + I+ D + A Sbjct: 116 AGDSDITIQLPAPKKKPKTPVDEASLVRTIALDDISKA 153 >gi|153952308|ref|YP_001397397.1| hypothetical protein JJD26997_0151 [Campylobacter jejuni subsp. doylei 269.97] gi|166979754|sp|A7H1L7|RIMP_CAMJD RecName: Full=Ribosome maturation factor rimP gi|152939754|gb|ABS44495.1| protein Tmden_0678 [Campylobacter jejuni subsp. doylei 269.97] Length = 140 Score = 78.9 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 10/143 (6%) Query: 29 IQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEG 88 ++ + +E L+ E + + +G + L DC LS+ +SPI DVE + G Sbjct: 3 LEALCKEAELSFYDDELVSENGKKIYRIYVQKEGGVNLDDCARLSEILSPIFDVEPPVNG 62 Query: 89 HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKE 148 Y LEVSSPG++R + + F + G +V +K+K+ KI+ + LE Sbjct: 63 EYFLEVSSPGLERKLSKIEHFAKSIGELVKITT----NEKEKIEAKIIAVDDENITLENL 118 Query: 149 KRGEKDMNELQIAISFDSLLSAR 171 + EK I+F+ + AR Sbjct: 119 ENKEKT------TINFNDIKKAR 135 >gi|117928725|ref|YP_873276.1| hypothetical protein Acel_1518 [Acidothermus cellulolyticus 11B] gi|259585656|sp|A0LV30|RIMP_ACIC1 RecName: Full=Ribosome maturation factor rimP gi|117649188|gb|ABK53290.1| protein of unknown function DUF150 [Acidothermus cellulolyticus 11B] Length = 170 Score = 78.9 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 17/154 (11%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPIL 80 A ++ ++ PV+ ++LL+ + L+I V++ DG + L + SQAIS L Sbjct: 7 AQRLAELLAPVVAGQGLDLEGVTLLDHRTSAHLRIVVDK-DGGVQLDEIAAASQAISHFL 65 Query: 81 DVEN-----IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 D + I Y LEVSSPGIDRP+V + R G +V ++ ++ ++ Sbjct: 66 DNDAEADAIIGPRSYTLEVSSPGIDRPLVEPRHWRRAIGRLVRVQLPDLGP----VVARV 121 Query: 136 MGTSETGFFL------EKEKRGEKDMNELQIAIS 163 + L + + E +AI+ Sbjct: 122 QDVTGDQVRLGIEWQYTDDGACVRQYEERTVAIA 155 >gi|332673248|gb|AEE70065.1| conserved hypothetical protein [Helicobacter pylori 83] Length = 146 Score = 78.9 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKKIEEKIEGVIESLGYLLYDVSLIKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + I+ Y LEVSS G++R + F G V ++ +K+ + + Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLT----NKESFQAILKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E E K + + Sbjct: 117 DLSADFELEDHAIKSVEYKDL 137 >gi|307637097|gb|ADN79547.1| transcription termination protein [Helicobacter pylori 908] gi|325995688|gb|ADZ51093.1| ribosome maturation factor [Helicobacter pylori 2018] gi|325997284|gb|ADZ49492.1| hypothetical protein hp2017_0406 [Helicobacter pylori 2017] Length = 146 Score = 78.9 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 70/141 (49%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKRIEEKIEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEVISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + I+ Y LEVSS G++R + F G V +++ +K+ + + Sbjct: 61 LDVCDFIQDAYTLEVSSMGLERTLKTPKHFKLSLGEKVEVKLI----NKESFQAILKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E E K + + Sbjct: 117 DLSADFELEDHAIKSVEYKDL 137 >gi|323127912|gb|ADX25209.1| hypothetical protein SDE12394_08865 [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 127 Score = 78.9 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 7/129 (5%) Query: 48 EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV--ENIIEGHYRLEVSSPGIDRPMVR 105 + +L I V++ +G +T+ D +L+ ISP+LD + Y LEVSSPG++RP+ Sbjct: 2 GSDYVLSILVDK-EGGITVEDTSDLTDIISPLLDTITPDPFPDQYMLEVSSPGLERPLKT 60 Query: 106 KSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFD 165 G V + + + G ++ ++ + + I + Sbjct: 61 VESLKAAVGSYVNVSLYKAIDKVKVFQGDLLAFDGETLTIDYLDK----TRHKTVDIPYQ 116 Query: 166 SLLSARLIV 174 ++ ARL V Sbjct: 117 TVAKARLAV 125 >gi|291276415|ref|YP_003516187.1| hypothetical protein HMU01790 [Helicobacter mustelae 12198] gi|290963609|emb|CBG39441.1| Putative hypothetical protein [Helicobacter mustelae 12198] Length = 147 Score = 78.9 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 68/155 (43%), Gaps = 12/155 (7%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 ++ ++ I+ +I+ + + I L+E +L+I + D +TL C+ +S+A+SP+ Sbjct: 2 ISQELQERIENLIQSLGYTLYDIVFLKENQSDILRISITHADQPITLDACQMVSEALSPL 61 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + Y LEVSSPG++R + F V + DK + ++ Sbjct: 62 LDVALSDQKSYFLEVSSPGVERILKTPRHFALSLHTRVRVRL----EDKSEFEAVLLEAK 117 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 E + ++ + +L + I+ Sbjct: 118 EEHATFLLDDGVKQSH-------PYAALKKVKTIL 145 >gi|114777566|ref|ZP_01452547.1| hypothetical protein SPV1_07661 [Mariprofundus ferrooxydans PV-1] gi|114552037|gb|EAU54554.1| hypothetical protein SPV1_07661 [Mariprofundus ferrooxydans PV-1] Length = 158 Score = 78.5 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 39/150 (26%), Positives = 73/150 (48%), Gaps = 7/150 (4%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + I S+++P+++E+ ++ISL + L V G + E +S+ ++ L Sbjct: 1 MESKIESLLRPIVDELGVEIIKISLGGGGHNPLLKVVVDKAGGVDSGMLERISRGLALQL 60 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG-TS 139 DVE++I+ +RLEV++PG+D P+ +DF R+ G + S G+ +G S Sbjct: 61 DVEDLIKSAFRLEVTTPGLDWPLTTNADFERYRGEWLKVMFADGS----SQEGRNLGPVS 116 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLS 169 + F L E G K + + + I + Sbjct: 117 DHAFMLLVE--GSKRVKDQEQVIEMADVNK 144 >gi|108562826|ref|YP_627142.1| hypothetical protein HPAG1_0401 [Helicobacter pylori HPAG1] gi|122386653|sp|Q1CUA4|RIMP_HELPH RecName: Full=Ribosome maturation factor rimP gi|107836599|gb|ABF84468.1| hypothetical protein HPAG1_0401 [Helicobacter pylori HPAG1] Length = 146 Score = 78.5 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 70/141 (49%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKKIEEKIEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEVISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + I+ Y LEVSS G++R + F G V +++ +K+ + + Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLI----NKESFQAVLKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E E K + + Sbjct: 117 DLSADFELEDHAIKSVGYKDL 137 >gi|269956008|ref|YP_003325797.1| hypothetical protein Xcel_1208 [Xylanimonas cellulosilytica DSM 15894] gi|269304689|gb|ACZ30239.1| protein of unknown function DUF150 [Xylanimonas cellulosilytica DSM 15894] Length = 192 Score = 78.5 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 62/154 (40%), Gaps = 5/154 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTL---RDCEELSQ 74 A + V+ P ++ +S ++++ V+ + + + +S+ Sbjct: 14 SATAEAVRRVVAPAVDAEGLFLESVSATRAGARSVVRVTVDLPEDAVGSLGSDALDAVSR 73 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 AIS LD ++++ G Y LEVS+PG RP+ F R +V +V + +L Sbjct: 74 AISAALDADDVVRGVYVLEVSTPGTSRPLTELRHFKRARTRLVTLSLVDGGEAEGRLQDV 133 Query: 135 IMGTSETGFFLEKEKRGEKDM-NELQIAISFDSL 167 + GT LE R + ++ + + Sbjct: 134 VAGTDGDELVLEDGGRFPVATVRQGRVEVELKRV 167 >gi|315586392|gb|ADU40773.1| conserved hypothetical protein [Helicobacter pylori 35A] gi|317181743|dbj|BAJ59527.1| hypothetical protein HPF57_0453 [Helicobacter pylori F57] Length = 146 Score = 78.5 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 68/141 (48%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL+ E +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKKIEEKIEGVIESLGYLLYDVSLIRENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + I+ Y LEVSS G++R + F G V ++ +K+ + + Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLT----NKESFQAVLKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E E K + + Sbjct: 117 DLSADFELEDHAIKSVEYKDL 137 >gi|217033305|ref|ZP_03438736.1| hypothetical protein HP9810_9g58 [Helicobacter pylori 98-10] gi|216944246|gb|EEC23671.1| hypothetical protein HP9810_9g58 [Helicobacter pylori 98-10] Length = 146 Score = 78.5 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 68/141 (48%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKKIEEKIEGVIESLGYLLYDVSLIKENEQHILRVSLKNPNGAVSLDICQQVSEIISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + I+ Y EVSS G++R + F G V ++ +K+ + + Sbjct: 61 LDVCDFIQDAYIFEVSSMGLERTLKTPKHFKLSLGEKVEVKLT----NKESFQAVLKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E E K + + Sbjct: 117 DLSADFELEDHAIKSVEYKDL 137 >gi|195977580|ref|YP_002122824.1| hypothetical protein Sez_0439 [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|259586200|sp|B4U1E4|RIMP_STREM RecName: Full=Ribosome maturation factor rimP gi|195974285|gb|ACG61811.1| hypothetical protein Sez_0439 [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 127 Score = 78.5 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 55/129 (42%), Gaps = 7/129 (5%) Query: 48 EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV--ENIIEGHYRLEVSSPGIDRPMVR 105 + +L I V++ +T+ D EL++ ISP+LD + Y LEVSSPG++RP+ Sbjct: 2 GSDYVLSILVDKA-SGITVEDTAELTELISPLLDTISPDPFPDQYMLEVSSPGLERPLKT 60 Query: 106 KSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFD 165 G + + + + G ++ ++ + + I + Sbjct: 61 AESLKAAVGSYINVSLYRAIDKVKVFQGDLVAFDGDILTIDYLDK----TRHKTVEIPYQ 116 Query: 166 SLLSARLIV 174 ++ ARL V Sbjct: 117 AVAKARLAV 125 >gi|312892422|ref|ZP_07751917.1| protein of unknown function DUF150 [Mucilaginibacter paludis DSM 18603] gi|311295206|gb|EFQ72380.1| protein of unknown function DUF150 [Mucilaginibacter paludis DSM 18603] Length = 161 Score = 78.5 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 72/163 (44%), Gaps = 16/163 (9%) Query: 19 MGLAGDISSVIQPVIEEM-SFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M + ++ +++ I + V + +L + L++ + + + + DC +S+ + Sbjct: 1 MNIEKRVALLVEEKIADRPELFLVDVKMLPNRKLIILVDGD---AGIGIADCAAISRFVG 57 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 L+ +N+IE Y LEVSSPGID P+ + + G ++ ++ Q GK++ Sbjct: 58 FKLEEDNVIEEAYNLEVSSPGIDSPLTLIRQYTKNIGRDLSVKMTDG----QLREGKLLS 113 Query: 138 TSETGFFLEKE--------KRGEKDMNELQIAISFDSLLSARL 172 +E ++++ K ++ I + A++ Sbjct: 114 LAEDAIVIDEKIKAVRKAPGEKGKKAEVVESTIPLTEIAEAKV 156 >gi|86149726|ref|ZP_01067956.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|205356511|ref|ZP_03223275.1| hypothetical protein Cj8421_0138 [Campylobacter jejuni subsp. jejuni CG8421] gi|85839994|gb|EAQ57253.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|205345698|gb|EDZ32337.1| hypothetical protein Cj8421_0138 [Campylobacter jejuni subsp. jejuni CG8421] Length = 140 Score = 78.5 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 10/143 (6%) Query: 29 IQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEG 88 ++ + +E L+ E + + +G + L DC +LS+ +SPI DVE + G Sbjct: 3 LEALCKEAELSFYDDELVSENGKKIYRIYVQKEGGVNLDDCAKLSEILSPIFDVEPPVNG 62 Query: 89 HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKE 148 Y LEVSSPG++R + + F + G + +K+K+ KI+ + LE Sbjct: 63 EYFLEVSSPGLERKLSKIEHFAKSIGELAKITT----NEKEKIEAKIIAVDDENITLENL 118 Query: 149 KRGEKDMNELQIAISFDSLLSAR 171 + EK I+F+ + AR Sbjct: 119 ENKEKT------TINFNDIKKAR 135 >gi|42526618|ref|NP_971716.1| hypothetical protein TDE1108 [Treponema denticola ATCC 35405] gi|51316704|sp|Q73NP4|RIMP_TREDE RecName: Full=Ribosome maturation factor rimP gi|41816811|gb|AAS11597.1| conserved hypothetical protein [Treponema denticola ATCC 35405] gi|325473160|gb|EGC76356.1| hypothetical protein HMPREF9353_02549 [Treponema denticola F0402] Length = 148 Score = 78.5 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 63/143 (44%), Gaps = 14/143 (9%) Query: 30 QPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEG 88 +P++E + F+ V +++L +K+ ++ + + + + ++DC + + + P + I Sbjct: 16 EPLVEGLGFKLVDLNVLHKKDVWQVKAVI-KSEKGVGIKDCTSVHRTLQPRI-EALIGSQ 73 Query: 89 HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKE 148 +EVSSPGI+R + R +F + G + + G I + G L + Sbjct: 74 DVTMEVSSPGINRLVKRAVEFYAFVGEEAQIWDNSITDWR---HGIIKEVNSEGLVLNSD 130 Query: 149 KRGEKDMNELQIAISFDSLLSAR 171 + I I + + AR Sbjct: 131 NQD--------IQIPYQDIKKAR 145 >gi|332665271|ref|YP_004448059.1| ribosome maturation factor rimP [Haliscomenobacter hydrossis DSM 1100] gi|332334085|gb|AEE51186.1| Ribosome maturation factor rimP [Haliscomenobacter hydrossis DSM 1100] Length = 158 Score = 78.1 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 65/155 (41%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSF-RSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I +++Q +E F I + +E L++FV+ D M C+ +S+ + Sbjct: 2 ITEKIEALLQEKYQEPEFADCFTIEIKQEGGNRLEVFVDS-DSGMQFEKCQRISRFLEAH 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + Y LEVSSPGI+RP+ +LR G + + G + + Sbjct: 61 LDTNGWLGEVYTLEVSSPGIERPLKFARQYLRNIGRTFEVRLSAG----ETKTGVLKAVN 116 Query: 140 ETGFFLEKEKR----GEKDMNELQIAISFDSLLSA 170 LE+E + + +Q I F+ + A Sbjct: 117 PESIVLEEEIKWKEGKKNMKGTVQTVIPFEHIAKA 151 >gi|15645660|ref|NP_207836.1| hypothetical protein HP1046 [Helicobacter pylori 26695] gi|6647978|sp|O25687|RIMP_HELPY RecName: Full=Ribosome maturation factor rimP gi|2314193|gb|AAD08091.1| conserved hypothetical protein [Helicobacter pylori 26695] Length = 146 Score = 78.1 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 68/141 (48%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I VIE + + +SL++E +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKKIEEKIGGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + I+ Y LEVSS G++R + F G V ++ +K+ + + Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLT----NKESFQAVLKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E E K + + Sbjct: 117 DLSADFELEDHAIKSVEYKDL 137 >gi|312130304|ref|YP_003997644.1| hypothetical protein Lbys_1583 [Leadbetterella byssophila DSM 17132] gi|311906850|gb|ADQ17291.1| protein of unknown function DUF150 [Leadbetterella byssophila DSM 17132] Length = 151 Score = 78.1 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 78/156 (50%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAIS 77 M L + +++ +I + + V+I++ + K + IF++ D +T+ C E+S+ + Sbjct: 1 MSLKDTVIKLVEDLIRDTDYYVVEIAVSDSKIRRKVSIFLDS-DAGITIDQCTEVSRKLG 59 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 L +E +I+ + LEVSSPG D P+ + +++ G + V S + GK++ Sbjct: 60 --LQLEEVIDEAFTLEVSSPGADSPLKFERQYVKNIGRSLKILKVDGSE----IKGKLVS 113 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 +E E + K + +A+S D + A++I Sbjct: 114 VENGSITIETEAK--KKVKSETVALSLDEIKEAKVI 147 >gi|317498936|ref|ZP_07957219.1| hypothetical protein HMPREF0996_02203 [Lachnospiraceae bacterium 5_1_63FAA] gi|316893769|gb|EFV15968.1| hypothetical protein HMPREF0996_02203 [Lachnospiraceae bacterium 5_1_63FAA] Length = 95 Score = 78.1 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 50/87 (57%), Gaps = 2/87 (2%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + ++ P+IE +F V + ++ N L+++ ++ +G + + DC +S+++ Sbjct: 6 DIETKTEELVLPIIEANNFELVDVEYVKEGANWYLRVYADK-EGGIAIDDCVLISRSLEE 64 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVR 105 LD E+ IE Y LEVSSPG+ RP+ + Sbjct: 65 KLDAEDFIEDAYILEVSSPGLGRPLKK 91 >gi|308184203|ref|YP_003928336.1| Ribosome maturation factor rimP [Helicobacter pylori SJM180] gi|308060123|gb|ADO02019.1| Ribosome maturation factor rimP [Helicobacter pylori SJM180] Length = 146 Score = 78.1 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKKIEEKIEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + I+ Y LEVSS G++R + F G V ++ +K+ + + Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKIPKHFKLSLGEKVEVKLT----NKESFQAILKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E E K + + Sbjct: 117 DWSADFELENHAIKSVEYKDL 137 >gi|322412489|gb|EFY03397.1| hypothetical protein SDD27957_08990 [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 127 Score = 78.1 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 7/129 (5%) Query: 48 EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV--ENIIEGHYRLEVSSPGIDRPMVR 105 + +L I V++ +G +T+ D +L+ ISP+LD + Y LEVSSPG++RP+ Sbjct: 2 GSDYVLSILVDK-EGGITVEDTSDLTDIISPLLDTITPDPFPDQYMLEVSSPGLERPLKT 60 Query: 106 KSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFD 165 G V + + + G ++ ++ + + I + Sbjct: 61 VESLKSAVGSYVNVSLYKAIDKVKVFQGDLLAFDGETLTIDYLDK----TRHKTVDIPYQ 116 Query: 166 SLLSARLIV 174 ++ ARL V Sbjct: 117 TVAKARLAV 125 >gi|317010677|gb|ADU84424.1| Ribosome maturation factor rimP [Helicobacter pylori SouthAfrica7] Length = 146 Score = 78.1 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 72/141 (51%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E + +L++ ++ +G ++L +C+++S+ ISP+ Sbjct: 1 MTKRIEERIEGVIESLGYLLYDVSLIKENEHNILRVSLKNPNGAVSLDNCQQVSEVISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + ++ Y LEVSS G++R + F G V ++V +K+ + + Sbjct: 61 LDVCDFLKDAYILEVSSMGLERVLKTPKHFKLSLGEKVGVKLV----NKESFQAILKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E E K + + Sbjct: 117 DLSADFELEDHTIKSVEYKDL 137 >gi|134102375|ref|YP_001108036.1| hypothetical protein SACE_5928 [Saccharopolyspora erythraea NRRL 2338] gi|291004240|ref|ZP_06562213.1| hypothetical protein SeryN2_06952 [Saccharopolyspora erythraea NRRL 2338] gi|167016718|sp|A4FM36|RIMP_SACEN RecName: Full=Ribosome maturation factor rimP gi|133914998|emb|CAM05111.1| protein of unknown function DUF150 [Saccharopolyspora erythraea NRRL 2338] Length = 185 Score = 77.7 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 66/151 (43%), Gaps = 9/151 (5%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 +A + V+ + F ++ + + L V + + L + E+S+A+S +L Sbjct: 9 VAARLEPVVAEAVSAAGFDLEELDVQQAGRRRLVKVVVDAEEGVGLDEISEISRAVSKVL 68 Query: 81 D-VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 D E+++ G Y LEV+SPG+DRP+ R + R +V + S L+ ++ Sbjct: 69 DAHEHVLAGSYTLEVTSPGVDRPLTRPRHWRRARYRLVRVRLADGSD----LVVRVGEAD 124 Query: 140 ETGFFLEKEKR----GEKDMNELQIAISFDS 166 + G + + +D+ + + F Sbjct: 125 DEGVVVLADGEIRTLAYRDVERAVVEVEFQQ 155 >gi|296269041|ref|YP_003651673.1| hypothetical protein Tbis_1058 [Thermobispora bispora DSM 43833] gi|296091828|gb|ADG87780.1| protein of unknown function DUF150 [Thermobispora bispora DSM 43833] Length = 171 Score = 77.7 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 65/152 (42%), Gaps = 16/152 (10%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ PV+E +++ + V DG +T+ + ++S+++S LD Sbjct: 9 RLVELLGPVVEAKGLDLEDVTITSAGRRRIVRVVVDRDGGVTVDEIADVSRSVSDRLDEV 68 Query: 84 NIIEG-HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 +++ Y LEV+SPG+DRP+ + + R G +V + + G+I +ET Sbjct: 69 DVLGDAPYVLEVTSPGVDRPLTEQRHWRRARGLLVKAVLRDGG----TVEGRITDVTETE 124 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 L + I L+ R+ + Sbjct: 125 VEL-----------DGTRRIPLADLVKGRVQL 145 >gi|325676663|ref|ZP_08156338.1| hypothetical protein HMPREF0724_14121 [Rhodococcus equi ATCC 33707] gi|325552518|gb|EGD22205.1| hypothetical protein HMPREF0724_14121 [Rhodococcus equi ATCC 33707] Length = 189 Score = 77.7 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 63/150 (42%), Gaps = 12/150 (8%) Query: 23 GDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + ++ I + +++ ++ +++ V+ D + L + LS IS + D Sbjct: 7 ERVVELLADPIGREGYDLEDVTITLAGRHSSVRVMVDS-DSGLELDEVARLSHVISDVFD 65 Query: 82 V-ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + E Y LEV+SPGIDRP+ + R G V E+ + + G++ ++ Sbjct: 66 AASDFGESPYTLEVTSPGIDRPLTEGRHWRRAQGRKVLVELAE-----ESVTGRVGRLTD 120 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 G L + +G + ++ + A Sbjct: 121 GGVDLVVKAKGGPVVRRVE----LADVKKA 146 >gi|254779091|ref|YP_003057196.1| hypothetical protein HELPY_0404 [Helicobacter pylori B38] gi|254001002|emb|CAX28946.1| Conserved hypothetical protein [Helicobacter pylori B38] Length = 146 Score = 77.7 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 68/141 (48%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKRIEEKIEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEVISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + I+ Y LEVSS G++R + F G V + +K+ + + Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVK----PTNKESFQAILKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E E K + + Sbjct: 117 DWSADFELEDHAIKSVEYKDL 137 >gi|210634028|ref|ZP_03297946.1| hypothetical protein COLSTE_01864 [Collinsella stercoris DSM 13279] gi|210158972|gb|EEA89943.1| hypothetical protein COLSTE_01864 [Collinsella stercoris DSM 13279] Length = 164 Score = 77.7 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 37/159 (23%), Positives = 67/159 (42%), Gaps = 10/159 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDD-GNMTLRDCEELS 73 L DI ++ V + ++ K +++ +++ + + L + + Sbjct: 1 MVKSKLEQDIIDALEAQAPLHGVDVVDVEVVGATKAPCIRVRLDKLEGDPINLDEVTAQT 60 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 +S ++ + I G Y LEVSSPG+ RP+ R SDF R+ G V ++ G Sbjct: 61 AWVSDTVEALDPIAGAYTLEVSSPGMKRPLRRPSDFARFAGEEVELTTTAM-EGRRSYKG 119 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 I T++T ++ E E + ISFD + L Sbjct: 120 VIAETTDTAVTIQPEG-------EEAVTISFDDVKKCTL 151 >gi|114566430|ref|YP_753584.1| hypothetical protein Swol_0896 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318498|sp|Q0AYJ1|RIMP_SYNWW RecName: Full=Ribosome maturation factor rimP gi|114337365|gb|ABI68213.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 139 Score = 77.7 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 4/123 (3%) Query: 41 VQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGI 99 V I +E L++F+++ D + L C + ++AI D + I + LEVSSPG+ Sbjct: 14 VNIEYRKENKEQFLRVFIDK-DNGVDLDMCSQANRAIKESFDEQEIPYDY--LEVSSPGL 70 Query: 100 DRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQ 159 DR + ++ D+ R++G+ V + S Q++ G ++G +E E K E+ Sbjct: 71 DRVLKKERDWERFSGYRVRIKTRKSFPGPQRITGILLGFDSENIAVELEGELLKVPREMI 130 Query: 160 IAI 162 I Sbjct: 131 TII 133 >gi|284036132|ref|YP_003386062.1| hypothetical protein Slin_1213 [Spirosoma linguale DSM 74] gi|283815425|gb|ADB37263.1| protein of unknown function DUF150 [Spirosoma linguale DSM 74] Length = 170 Score = 77.4 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 66/171 (38%), Gaps = 19/171 (11%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFV-ERDDGNMTLRDCEELSQAIS 77 M I+ ++QP ++ F V I + + L++ + D +T+ DC ++S+ + Sbjct: 1 MDDKAKITELLQPYLKNDLFYIVDIQVAGRQGGRLKVTILLDSDAGITIDDCADISRRLG 60 Query: 78 PILDVENIIEGH-YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 +D N + LE+SSPG+D P+ F+R G + + G + Sbjct: 61 GQMDEMNFFGDSPFTLEISSPGVDYPLTFSRQFVRNVGRQLIVTLTDGVI----RKGVLE 116 Query: 137 GTSETGFFLEKEKRGEKDMNE-------------LQIAISFDSLLSARLIV 174 +E L+ E + + I F + A++ V Sbjct: 117 SVAEDHIVLDIEAEKKSKSKKKKDADVSPDLQPVGPTPILFGQIKKAQVEV 167 >gi|259016313|sp|Q7U8L5|RIMP_SYNPX RecName: Full=Ribosome maturation factor rimP Length = 155 Score = 77.4 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 60/141 (42%), Gaps = 2/141 (1%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDG-NMTLRDCEELSQAISPILD 81 ++ ++ V + F I LL + L++ + R +G ++ + DC S + L+ Sbjct: 8 ELETLATSVAADQGFELCGIQLLTHLAPMTLEVHIRRSNGVDVNMDDCAGFSGTLGEALE 67 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 ++ Y LE+SSPGI + DF + G V +Q+L G ++ E Sbjct: 68 SAQLLTEAYVLEISSPGIGETLSSDRDFQTFRGFPVEVVHRDRDDTEQRLEGLLLERDED 127 Query: 142 GFFLEKEKRGEKDMNELQIAI 162 + R ++ + +++ Sbjct: 128 TLQINIRGRIKRLPRDHVLSV 148 >gi|207109808|ref|ZP_03243970.1| hypothetical protein HpylH_11664 [Helicobacter pylori HPKX_438_CA4C1] Length = 143 Score = 77.4 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 71/145 (48%), Gaps = 12/145 (8%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 +++ VIE + + +SL++E +L++ ++ +G ++L C+++S+ ISP+LDV + I Sbjct: 5 LLEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPLLDVCDFI 64 Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLE 146 + Y LEVSS G++R + F G V ++ +K+ + ++ E Sbjct: 65 QDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLT----NKESFQAVLKDANDLSADFE 120 Query: 147 KEKRGEKDMNELQIAISFDSLLSAR 171 E K ++ + L + Sbjct: 121 LEDHAVK-------SVEYKDLKKVK 138 >gi|87301302|ref|ZP_01084143.1| hypothetical protein WH5701_15491 [Synechococcus sp. WH 5701] gi|87284270|gb|EAQ76223.1| hypothetical protein WH5701_15491 [Synechococcus sp. WH 5701] Length = 156 Score = 77.4 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 10/155 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDD-GNMTLRDCEELSQAISP 78 L + ++ P+ E + + + L L I + D ++ L +C S + Sbjct: 5 LIPHLERLVTPLAEASGLALQGVEIQAHRLPLTLVIQIRHADGRDINLDECAAFSGVLGE 64 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +++ ++ Y LEVSSPGI ++ DF + G VA G + G ++ Sbjct: 65 VVEASELMTQAYVLEVSSPGIGEELLDDRDFHSFRGFPVAVRFRDGKGLETTREGLLLER 124 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 E L R I ++S RL+ Sbjct: 125 DEEHLQLNLHGRIS--------RIPRPDVISVRLV 151 >gi|290957022|ref|YP_003488204.1| hypothetical protein SCAB_25381 [Streptomyces scabiei 87.22] gi|260646548|emb|CBG69645.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length = 169 Score = 77.4 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 67/154 (43%), Gaps = 9/154 (5%) Query: 23 GDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++P++ +I++ + +L++ V+ D+ L ++S+A+S LD Sbjct: 7 ERLRELLEPLVRSQGLDLEEIAVDSVGRKRVLRVVVDSDE-GADLDAVADVSRALSAKLD 65 Query: 82 VENIIEG-HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + + Y LEV +PG +R + + R +V + LI +I+ + Sbjct: 66 ETDAMGQSEYTLEVGTPGAERALTEHRHYRRAVDRLVKFTLREDGE----LIARILTVDD 121 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G LE G K ++FD + AR+ V Sbjct: 122 EGLDLEV--PGVKGRRATSRRLAFDEIDRARVQV 153 >gi|148240412|ref|YP_001225799.1| hypothetical protein SynWH7803_2076 [Synechococcus sp. WH 7803] gi|166980273|sp|A5GNI7|RIMP_SYNPW RecName: Full=Ribosome maturation factor rimP gi|147848951|emb|CAK24502.1| Conserved hypothetical protein [Synechococcus sp. WH 7803] Length = 155 Score = 77.4 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 61/143 (42%), Gaps = 2/143 (1%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDD-GNMTLRDCEELSQAISPILD 81 DI+ V F V+I +L + + +Q+ + R D +++L DC S + L+ Sbjct: 8 DITPVAASTAAAHGFELVEIQILTHLQPMTVQVQIRRTDGSDVSLDDCAGFSGPMGEALE 67 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + ++ Y LE+SSPGI + DF + + V G +Q+ G ++ + Sbjct: 68 SQALLTEAYVLEISSPGIGEQLQSDRDFQTFRSYPVEVLYRDDEGREQRQQGSLLERNAD 127 Query: 142 GFFLEKEKRGEKDMNELQIAISF 164 + R ++ I++ Sbjct: 128 HVQVNVRGRIKRIARASVISVQL 150 >gi|317177213|dbj|BAJ55002.1| hypothetical protein HPF16_0405 [Helicobacter pylori F16] Length = 146 Score = 77.4 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 69/141 (48%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ +IE + + +SL++E +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKKIEEKIEGMIESLGYLLYDVSLIKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + I+ Y LEVSS G++R + F G V ++ +K+ + + Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLT----NKESFQAVLKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E E K + + Sbjct: 117 DLSADFELEDHAIKSVEYKDL 137 >gi|125624586|ref|YP_001033069.1| hypothetical protein llmg_1797 [Lactococcus lactis subsp. cremoris MG1363] gi|166980233|sp|A2RM41|RIMP_LACLM RecName: Full=Ribosome maturation factor rimP gi|124493394|emb|CAL98368.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris MG1363] gi|300071377|gb|ADJ60777.1| hypothetical protein LLNZ_09255 [Lactococcus lactis subsp. cremoris NZ9000] Length = 157 Score = 77.4 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 69/159 (43%), Gaps = 10/159 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + + I+P I F + + +++L I V++ +G + + + ELS+ ISP Sbjct: 3 DVVKIVEDFIKPHI-PKPFELFAVEWEKFGGDMMLSILVDK-EGGIEIDETAELSELISP 60 Query: 79 ILDVENIIE---GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +LD + Y LEV+SPG +RP+ + F G + ++ ++++ G + Sbjct: 61 LLDTISPDPFPTEGYLLEVASPGAERPLRKAEHFAGAVGEYIFVKLYQKINNEKEFTGDL 120 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + ++ + I I ++ A+ +V Sbjct: 121 VSFDGETLVVDVLDK----TRHKNIEIPLSAVAKAQTMV 155 >gi|317013844|gb|ADU81280.1| Ribosome maturation factor rimP [Helicobacter pylori Gambia94/24] Length = 146 Score = 77.4 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 70/141 (49%), Gaps = 5/141 (3%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPI 79 + I I+ VIE + + +SL++E +L++ ++ +G ++L C+++S+ ISP+ Sbjct: 1 MTKRIEEKIEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEVISPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDV + I+ Y LEVSS G++R + F G V +++ +K+ + + Sbjct: 61 LDVCDFIQDAYTLEVSSMGLERTLKIPKHFKLSLGEKVEVKLI----NKESFQAVLKDAN 116 Query: 140 ETGFFLEKEKRGEKDMNELQI 160 + E E K + + Sbjct: 117 DLSADFELEDHAIKSVEYKDL 137 >gi|116511572|ref|YP_808788.1| hypothetical protein LACR_0813 [Lactococcus lactis subsp. cremoris SK11] gi|122940261|sp|Q030K6|RIMP_LACLS RecName: Full=Ribosome maturation factor rimP gi|116107226|gb|ABJ72366.1| hypothetical protein LACR_0813 [Lactococcus lactis subsp. cremoris SK11] Length = 157 Score = 77.4 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 69/159 (43%), Gaps = 10/159 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + + I+P I F + + +++L I V++ +G + + + ELS+ ISP Sbjct: 3 DVVKIVEDFIKPHI-PKPFELFAVEWEKFGGDMMLSILVDK-EGGIEIDETAELSELISP 60 Query: 79 ILDVENIIE---GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +LD + Y LEV+SPG +RP+ + F G + ++ ++++ G + Sbjct: 61 LLDTISPDPFPTEGYLLEVASPGAERPLRKAEHFAGAVGEYIFVKLYQKINNEKEFTGDL 120 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + ++ + I I ++ A+ +V Sbjct: 121 VSFDGENLVVDVLDK----TRHKNIEIPLSAVAKAQTMV 155 >gi|167751251|ref|ZP_02423378.1| hypothetical protein EUBSIR_02237 [Eubacterium siraeum DSM 15702] gi|167655758|gb|EDR99887.1| hypothetical protein EUBSIR_02237 [Eubacterium siraeum DSM 15702] Length = 163 Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 61/148 (41%), Gaps = 3/148 (2%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + P+IE + + +E L++ ++ DG + +CEE+++ ++ Sbjct: 15 VERITEQKVLPIIERYGYELWDVIFEKEGAMWYLKVLFDKADGGIDDVECEEITEPLNKA 74 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 +D + I+ EV SPG+DR + + F++ G + + +G G + Sbjct: 75 VDTLSCIDLVDVFEVGSPGLDRQLRKPFHFVKMKGEKIKVTVRDENGKTAYYSGVLGDYD 134 Query: 140 ET--GFFLEKEKRGEKDMNELQIAISFD 165 E F ++ + K I+ D Sbjct: 135 ENSGEFTVQTDDGEMKFNAAKCRRIALD 162 >gi|291532988|emb|CBL06101.1| Uncharacterized protein conserved in bacteria [Megamonas hypermegale ART12/1] Length = 112 Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 50/89 (56%), Gaps = 1/89 (1%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAI 76 + + + + ++ + V + ++E++ L++++++ +G + L DC+E+S + Sbjct: 1 MANRVEEAVEKIAEEILANTDYELVDVEYVKERDWFLRVYIDK-EGGIGLDDCQEVSGLL 59 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVR 105 L+ NII Y LEVSSPG+DR + + Sbjct: 60 DEKLEELNIINDRYILEVSSPGLDRALKK 88 >gi|291296310|ref|YP_003507708.1| hypothetical protein Mrub_1931 [Meiothermus ruber DSM 1279] gi|290471269|gb|ADD28688.1| protein of unknown function DUF150 [Meiothermus ruber DSM 1279] Length = 159 Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 63/158 (39%), Gaps = 7/158 (4%) Query: 11 YEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDG-NMTLRDC 69 EP G A S V + V+ + + ++ L KN +L + +ER D +++ D Sbjct: 1 MEPEHPLQAGGAPQWSQVAESVLAPLGYEVLEAGLKSGKNPVLLVRIERKDEVPISIADL 60 Query: 70 EELSQAISPILD-VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDK 128 E ++A+S LD +E ++ Y L+V SPG DRP+ F R+ G V Sbjct: 61 ERANRALSAHLDTLEALLPARYLLQVESPGADRPLFTARHFERFAGLKVRVRSPQG---- 116 Query: 129 QKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDS 166 G+I EK + + + Sbjct: 117 -NFTGRIGAVRGDMVEFLLEKDETRSLQLGTFKATLAE 153 >gi|307331527|ref|ZP_07610640.1| protein of unknown function DUF150 [Streptomyces violaceusniger Tu 4113] gi|306882844|gb|EFN13917.1| protein of unknown function DUF150 [Streptomyces violaceusniger Tu 4113] Length = 174 Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 64/151 (42%), Gaps = 7/151 (4%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 + +++P++ ++ + + V D + L C ELS+ IS LD Sbjct: 7 ERLRGLLEPLVSARDLDLEEVEVTPAGRRRVLRVVVDSDDGVQLDTCAELSRDISQTLDD 66 Query: 83 ENIIEG-HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + + Y LEV+SPG +RP+ + R G ++ + + L+ +I+ + Sbjct: 67 TDAMGQVAYVLEVTSPGAERPLTEPRHYRRATGRLMRARLTDDAE----LVARIVSVDDE 122 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G LE G K ++F+ + AR+ Sbjct: 123 GLDLEV--PGVKGRKPTARRLAFEEISKARV 151 >gi|296272022|ref|YP_003654653.1| hypothetical protein Arnit_0482 [Arcobacter nitrofigilis DSM 7299] gi|296096197|gb|ADG92147.1| protein of unknown function DUF150 [Arcobacter nitrofigilis DSM 7299] Length = 142 Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 62/147 (42%), Gaps = 14/147 (9%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + I+ ++ I +E + + +I++ D ++L C E+S+ +SPILD Sbjct: 3 LEESIEMTVKGCGVELYDILTTKENDRDIFRIYITSKD-GVSLDKCAEISRLVSPILDTN 61 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + G Y LEVSSPGI+R + + + ++ G V + + Sbjct: 62 EPMYGKYNLEVSSPGIERKLKKTAHYISSIGENVKVKDFD------------KNVLKGEL 109 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSA 170 E + E + IS+D + SA Sbjct: 110 IFADENEIKVKTQEGEETISYDKISSA 136 >gi|15672745|ref|NP_266919.1| hypothetical protein L173151 [Lactococcus lactis subsp. lactis Il1403] gi|34223137|sp|Q9CHG8|RIMP_LACLA RecName: Full=Ribosome maturation factor rimP gi|12723681|gb|AAK04861.1|AE006310_3 conserved hypothetical protein [Lactococcus lactis subsp. lactis Il1403] gi|326406314|gb|ADZ63385.1| Ribosome maturation factor [Lactococcus lactis subsp. lactis CV56] Length = 157 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 70/159 (44%), Gaps = 10/159 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + + I+P I F + + +++L I V++ +G + + + ELS+ ISP Sbjct: 3 DVVKIVEDFIRPHI-PQPFELFAVEWEKFGGDMMLSILVDK-EGGIEIDETAELSEIISP 60 Query: 79 ILDVENIIE---GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +LD + Y LEV+SPG +RP+ + F G + ++ +++++ G + Sbjct: 61 LLDTISPDPFPTEGYLLEVASPGAERPLRKAEHFAGAVGEYIFVKLYQKINNEKEITGDL 120 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + ++ + I I ++ A+ +V Sbjct: 121 VSFDGETLVVDVLDK----TRHKNIEIPLSAVAKAQTMV 155 >gi|94985334|ref|YP_604698.1| hypothetical protein Dgeo_1233 [Deinococcus geothermalis DSM 11300] gi|259585747|sp|Q1IZ05|RIMP_DEIGD RecName: Full=Ribosome maturation factor rimP gi|94555615|gb|ABF45529.1| protein of unknown function DUF150 [Deinococcus geothermalis DSM 11300] Length = 155 Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 53/129 (41%), Gaps = 7/129 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVER-DDGNMTLRDCEELSQAISPILDV 82 + ++ + V++ + + + + + + ++ I ++R D+ +T+ D E S+A+ D Sbjct: 12 LRTLAEGVLQPLGYEVLDVQVQNPGRRPIVVIRMDRLDEQPVTVEDLETASRAVGAEFDR 71 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 + I G YRLE+ SPG RP+ R + R G GD I Sbjct: 72 VDPIAGEYRLELESPGAKRPLTRARHYERMLGLKARVR-----GDGHSFTAPIKAVDGEQ 126 Query: 143 FFLEKEKRG 151 + Sbjct: 127 VTFDVGGED 135 >gi|226306116|ref|YP_002766076.1| hypothetical protein RER_26290 [Rhodococcus erythropolis PR4] gi|259586185|sp|C0ZYA2|RIMP_RHOE4 RecName: Full=Ribosome maturation factor rimP gi|226185233|dbj|BAH33337.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length = 206 Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 66/150 (44%), Gaps = 12/150 (8%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +I ++ + + + K+ ++I V+ D + L E+S+ +S + D Sbjct: 7 ERVIELISELVHAQGYDVEDVVVTSAGKHSAVRIMVDS-DAGIELDAAAEISRLVSELFD 65 Query: 82 -VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 +E I E Y LEV+SPGIDRP+ + + R G ++ + ++G+I ++ Sbjct: 66 SLEEIGETPYTLEVTSPGIDRPLTLERHWRRARGRKARIDLA-----GETVVGRIGTLND 120 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 + RG + E I+ + A Sbjct: 121 DSVAVVIGGRGGLTVRE----IALGDVQKA 146 >gi|193214184|ref|YP_001995383.1| hypothetical protein Ctha_0465 [Chloroherpeton thalassium ATCC 35110] gi|259585751|sp|B3QUN0|RIMP_CHLT3 RecName: Full=Ribosome maturation factor rimP gi|193087661|gb|ACF12936.1| protein of unknown function DUF150 [Chloroherpeton thalassium ATCC 35110] Length = 182 Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 77/183 (42%), Gaps = 21/183 (11%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVER 59 M+S L + ++ +M ++ P E V I + K + ++++F + Sbjct: 2 MDSRLKLIQDWLLQLLAEMTVSD-------PDGNEHEVFLVDIEVHSNKTIDIIEVFADT 54 Query: 60 DDGNMTLRDCEELSQAISPILDVEN----IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGH 115 D +++ +C+ LS+ IS LD ++ H++L VSSPG+ RP+ + + G Sbjct: 55 -DSGISVENCKFLSKHISAELDASEEMQALLPRHFKLVVSSPGLSRPLTMNRQYKKNIGR 113 Query: 116 VVACEIVLSSGDKQKLIGKIMGTSET---GFFLEKEKRGE-----KDMNELQIAISFDSL 167 ++ + G+ + + G+ + E L+ K + K + I F + Sbjct: 114 LMQVTYQNADGEIKTIDGRFISLEEEAEASITLDITKIQKSKPNAKPKPPELVTIPFSQI 173 Query: 168 LSA 170 A Sbjct: 174 QKA 176 >gi|229491457|ref|ZP_04385281.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|229321742|gb|EEN87539.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length = 206 Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 65/150 (43%), Gaps = 12/150 (8%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +I ++ + + + K+ ++I V+ D + L E+S+ +S + D Sbjct: 7 ERVIELISELVHAQGYDVEDVVVTSAGKHSAVRIMVDS-DAGIELDAAAEISRLVSELFD 65 Query: 82 -VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 +E I E Y LEV+SPGIDRP+ + R G ++ + ++G+I ++ Sbjct: 66 TLEEIGETPYTLEVTSPGIDRPLTLDRHWRRARGRKARIDLA-----GETVVGRIGTLND 120 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 + RG + E I+ + A Sbjct: 121 DSVAVVIGGRGGLTVRE----IALGDVQKA 146 >gi|297626629|ref|YP_003688392.1| hypothetical protein PFREUD_14670 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922394|emb|CBL56966.1| Hypothetical protein PFREUD_14670 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 157 Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 67/166 (40%), Gaps = 19/166 (11%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVE---RDDGNMTLRDCEELSQAIS 77 + ++ P++ E ++ ++ K+ +L+I ++ + L + ++AIS Sbjct: 3 ESTLIDLLDPIVAEHGLEIDELKIVRAGKHSVLRISLDGDGSEGHGPDLDQIADATRAIS 62 Query: 78 PILDV-ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 LD E Y LEVSS G+ P+ R + + R +V ++ G+I Sbjct: 63 HALDEAEAPSNSPYTLEVSSRGVSAPLTRPAHWRRNATRLVEVT---PLEGEK-YTGRIT 118 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS 182 E G LE + + + F + A +V E+ R S Sbjct: 119 SADEDGAELEIDGQPRH--------VDFGQVRRA--VVQIEMNRKS 154 >gi|312865482|ref|ZP_07725709.1| conserved hypothetical protein [Streptococcus downei F0415] gi|311099000|gb|EFQ57217.1| conserved hypothetical protein [Streptococcus downei F0415] Length = 134 Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 8/136 (5%) Query: 42 QISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD--VENIIEGHYRLEVSSPG 98 + + + +L I V++ + +T+ D EL+ ISP+LD + Y LE+SSPG Sbjct: 2 DVEYEKLGADYVLSILVDKPE-GITVDDTAELTDIISPLLDTIKPDPFPSQYMLEISSPG 60 Query: 99 IDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNEL 158 ++RP+ G + + + + G ++ LE + K Sbjct: 61 LERPLKTAESLEAAIGSYINVSLYKAIDKVKVFEGDLLDFDGQTLTLEYLDKTRKK---- 116 Query: 159 QIAISFDSLLSARLIV 174 Q+ I + ++ AR+ V Sbjct: 117 QVEIPYSTVAKARMAV 132 >gi|328479977|gb|EGF49014.1| hypothetical protein AAULR_12702 [Lactobacillus rhamnosus MTCC 5462] Length = 119 Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 7/121 (5%) Query: 55 IFVERDDGNMTLRDCEELSQAISPILD--VENIIEGHYRLEVSSPGIDRPMVRKSDFLRW 112 +++++ G +TL +C +S+A+S LD + I Y LEVSSPG +RP+ R++D+ + Sbjct: 1 VYIDKS-GGITLDECVLVSEALSEQLDAINPDPIPQQYFLEVSSPGAERPLKRETDYEQA 59 Query: 113 NGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G + + K+ G + L + + K I + SARL Sbjct: 60 IGDYIHVSLFKKLDGKKVFEGTLKDLKPDQLTLTVKDKSRKFDQ----VIDRKLIASARL 115 Query: 173 I 173 Sbjct: 116 A 116 >gi|313681591|ref|YP_004059329.1| hypothetical protein Sulku_0462 [Sulfuricurvum kujiense DSM 16994] gi|313154451|gb|ADR33129.1| protein of unknown function DUF150 [Sulfuricurvum kujiense DSM 16994] Length = 143 Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 62/153 (40%), Gaps = 15/153 (9%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 M L DI +++ + ++ E + G ++L C E + ISP Sbjct: 1 MSLESDIKKMVESI----GLSLYDTAVFNENENTIFRVSVTAPGGVSLDQCVEATHLISP 56 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LDV + G YRLEVSSPGI+R + F + G V V +K+K G+++ Sbjct: 57 LLDVTPPVGGEYRLEVSSPGIERKLKTLDHFAQSVGEKVVFSTV----NKEKFDGEVVSV 112 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 + K + F S+ A+ Sbjct: 113 ENEEITI-------KTKEGETHTVPFRSISKAK 138 >gi|328950380|ref|YP_004367715.1| Ribosome maturation factor rimP [Marinithermus hydrothermalis DSM 14884] gi|328450704|gb|AEB11605.1| Ribosome maturation factor rimP [Marinithermus hydrothermalis DSM 14884] Length = 147 Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 7/145 (4%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVER-DDGNMTLRDCEELSQAISPILD 81 ++ +VI+ V+ + + ++++L K +L + +ER D+ ++ D E SQ IS LD Sbjct: 2 ELWNVIEAVVRPLGYEVLEVTLKGGGKTRVLTVRLERADEQPISFADLERASQVISLELD 61 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + I G YRLEV SPG DRP++ F R+ G + + G+I+ Sbjct: 62 RLDPIPGAYRLEVESPGPDRPLITARHFERFMGLKAKVQSDEG-----RFTGRIVRVEGD 116 Query: 142 GFFLEKEKRGEKDMNELQIAISFDS 166 E+ + + Sbjct: 117 VVTFALATGEERALKLGTFKANLAE 141 >gi|281491259|ref|YP_003353239.1| hypothetical protein LLKF_0783 [Lactococcus lactis subsp. lactis KF147] gi|281375000|gb|ADA64518.1| Hypothetical protein LLKF_0783 [Lactococcus lactis subsp. lactis KF147] Length = 157 Score = 76.2 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 70/159 (44%), Gaps = 10/159 (6%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 + + I+P I F + + +++L I V++ +G + + + ELS+ ISP Sbjct: 3 DVVKIVEDFIRPHI-PQPFELFAVEWEKFGGDMMLSILVDK-EGGIEIDETAELSEIISP 60 Query: 79 ILDVENIIE---GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +LD + Y LEV+SPG +RP+ + F G + ++ +++++ G + Sbjct: 61 LLDTISPDPFPTEGYLLEVASPGAERPLRKAEHFAGAVGEYIFVKLYQKINNEKEITGDL 120 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + ++ + I I ++ A+ +V Sbjct: 121 VSFDGETLVVDVLDK----TRYKNIEIPLSAVAKAQTMV 155 >gi|312194981|ref|YP_004015042.1| hypothetical protein FraEuI1c_1099 [Frankia sp. EuI1c] gi|311226317|gb|ADP79172.1| protein of unknown function DUF150 [Frankia sp. EuI1c] Length = 277 Score = 76.2 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 11/154 (7%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 +I + + F +SL +L++ V+RDD + L + S+ IS +LD Sbjct: 22 AEIRDRLAEALARAGFDLDDLSLSRAGSRSVLRVAVDRDD-GIDLDAVADASRLISDLLD 80 Query: 82 VENI--IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 + + G Y LEV+SPG+DRP+ + R G +V V + ++G+++G Sbjct: 81 QVDEGGLAGAYVLEVTSPGVDRPLTEPRHWRRARGRLVEARRVDGT----VVLGRVLGAD 136 Query: 140 ETGFFLEKEKRGEKDMNELQIAIS---FDSLLSA 170 + G L + ++ I F + A Sbjct: 137 DEGVDLAVAAGPVRRGRPVKTKIERLRFADVARA 170 >gi|169630218|ref|YP_001703867.1| hypothetical protein MAB_3136c [Mycobacterium abscessus ATCC 19977] gi|259585791|sp|B1MD92|RIMP_MYCA9 RecName: Full=Ribosome maturation factor rimP gi|169242185|emb|CAM63213.1| Conserved hypothetical protein [Mycobacterium abscessus] Length = 189 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 59/153 (38%), Gaps = 10/153 (6%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLL----EEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 + ++ P + + + + + V+ D + L LS+ S Sbjct: 17 DDQVLELLAPEFSRSGVEIESVVVSDGGVAGRPSRIAVVVDS-DTPVDLDAVAGLSRTAS 75 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +LD + Y LE+++PG+DRP+ + F R + + + L+G+I Sbjct: 76 ALLDEADTGWQAYELEITTPGVDRPLTTVAHFRRAHLRLAQIRLTNGED----LLGRIGI 131 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 T + G + ++ K ++F + SA Sbjct: 132 THDDGVQVVL-RKPIKGTGWTVRDLAFSDIESA 163 >gi|33865135|ref|NP_896694.1| hypothetical protein SYNW0601 [Synechococcus sp. WH 8102] gi|33638819|emb|CAE07116.1| conserved hypothetical protein [Synechococcus sp. WH 8102] Length = 166 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 59/147 (40%), Gaps = 10/147 (6%) Query: 28 VIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDG-NMTLRDCEELSQAISPILDVENI 85 + V + F I LL + L++ + R +G ++ + DC S + L+ + Sbjct: 23 LATSVAADQGFELCGIQLLTHLAPMTLEVHIRRSNGVDVNMDDCAGFSGTLGEALESAQL 82 Query: 86 IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFL 145 + Y LE+SSPGI + DF + G V +Q+L G ++ E + Sbjct: 83 LTEAYVLEISSPGIGETLSSDRDFQTFRGFPVEVVHRDRDDTEQRLEGLLLERDEDTLQI 142 Query: 146 EKEKRGEKDMNELQIAISFDSLLSARL 172 R + + D +LS RL Sbjct: 143 NIRGRIK--------RLPRDHVLSVRL 161 >gi|308176798|ref|YP_003916204.1| hypothetical protein AARI_10150 [Arthrobacter arilaitensis Re117] gi|307744261|emb|CBT75233.1| conserved hypothetical protein [Arthrobacter arilaitensis Re117] Length = 188 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 81/171 (47%), Gaps = 17/171 (9%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDD--GNMTLRDCEELSQAISP 78 A +++++ +E ++SL K +++QI V++ D ++ L + E++ IS Sbjct: 12 AQRLTALLSKEVESHGLLLEEVSLRPSGKQMIVQIIVDKADGHESLNLDELGEVTTTISN 71 Query: 79 ILDVENIIEG--HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 LD + + Y LEVSSPG+ RP+ + ++R +V + + KL G+++ Sbjct: 72 ALDKDAVYASAAPYELEVSSPGLSRPLTAQRHWIRAINRMVKISLADGT----KLRGRLL 127 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAIS----FDSLLSA----RLIVTDELL 179 +++ + + + K ++++ F+++ A L D LL Sbjct: 128 EVNDSDVLVAEHREPAKKGMKVKVLDPATHAFENIRKAVVDPELNFDDALL 178 >gi|294631731|ref|ZP_06710291.1| conserved hypothetical protein [Streptomyces sp. e14] gi|292835064|gb|EFF93413.1| conserved hypothetical protein [Streptomyces sp. e14] Length = 169 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 69/154 (44%), Gaps = 9/154 (5%) Query: 23 GDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++P++ +I++ + +L++ V+ D L ++S+A+S LD Sbjct: 7 ERLRELLEPLVASQGLDLEEIAVDSVGRKRVLRVVVDS-DTGADLDQIADVSRALSAKLD 65 Query: 82 VENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + + EG Y LEV +PG +R + ++R G + ++ L+ +I+ + Sbjct: 66 ESDAMGEGEYTLEVGTPGAERLLTEHRHYVRATGRLAKFQLAEGGE----LVARILRVDD 121 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G LE + ++A ++ AR+ V Sbjct: 122 EGLDLEVPGVKGRKATTRRVAFP--DVVRARVQV 153 >gi|126697020|ref|YP_001091906.1| hypothetical protein P9301_16821 [Prochlorococcus marinus str. MIT 9301] gi|166980189|sp|A3PEY0|RIMP_PROM0 RecName: Full=Ribosome maturation factor rimP gi|126544063|gb|ABO18305.1| DUF150 [Prochlorococcus marinus str. MIT 9301] Length = 155 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 66/153 (43%), Gaps = 10/153 (6%) Query: 22 AGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDD-GNMTLRDCEELSQAISPI 79 + +++ V + +++ + ++++I +++ + +++L DC + S Sbjct: 6 KSKLEKLLENVANKQDLEIYSLNIQTNQNPIVIEIIIKKTNGNDVSLDDCALFNTPASDE 65 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 ++ N++ Y LE+SS G+ + + DF + G V E+ + + L G + S Sbjct: 66 IEKSNLLNCSYVLEISSQGVSDELTSERDFKTFKGFPVNVELNQKNSKIKFLNGLLYEKS 125 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + R +K I FD +L L Sbjct: 126 NDYLAINIKGRIKK--------IPFDEVLKISL 150 >gi|329936657|ref|ZP_08286364.1| hypothetical protein SGM_1856 [Streptomyces griseoaurantiacus M045] gi|329303887|gb|EGG47770.1| hypothetical protein SGM_1856 [Streptomyces griseoaurantiacus M045] Length = 179 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 63/153 (41%), Gaps = 7/153 (4%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 + +++P++ +I + + V D L ++S+A+S LD Sbjct: 7 ERLRELLEPLVTSQGLDLEEIDVASVGRRRVLRVVVDSDTGADLDRVADVSRALSAKLDE 66 Query: 83 ENIIE-GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + + G Y LEV +PG +R + ++R +V ++ L+ +I+G E Sbjct: 67 TDAMGAGEYTLEVGTPGAERALTEHRHYVRALDRLVRFQLREGGE----LVARILGVDEE 122 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G LE G K ++F + AR+ V Sbjct: 123 GLDLEV--PGVKGRRPTTRRLAFPDVDKARVQV 153 >gi|227875843|ref|ZP_03993969.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243] gi|269977479|ref|ZP_06184451.1| conserved hypothetical protein [Mobiluncus mulieris 28-1] gi|306819124|ref|ZP_07452838.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239] gi|307700024|ref|ZP_07637073.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16] gi|227843591|gb|EEJ53774.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243] gi|269934395|gb|EEZ90957.1| conserved hypothetical protein [Mobiluncus mulieris 28-1] gi|304648100|gb|EFM45411.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239] gi|307614785|gb|EFN94005.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16] Length = 178 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 75/158 (47%), Gaps = 16/158 (10%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERD--DGNMTLRDCEELSQAI 76 +A ++S ++ P + ++ ++ + KN ++IF++ G + E SQ I Sbjct: 12 DIAAEVSQLLAPTVTQLGLFLEKVCVKGSKNSRQVEIFLDLPAGSGEIGFERLEAASQEI 71 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 S ++D + +EG Y LEVS+ G + + F+R G ++++ G+I+ Sbjct: 72 SRLMDSADPVEGKYNLEVSTLGAEHALDNPRLFVRAVGRDAEIT----VAGQKRV-GRIL 126 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ET F E++ + E ISF +L SAR +V Sbjct: 127 AAGETDFTWEEDGKQE--------TISFSALQSARTVV 156 >gi|284929276|ref|YP_003421798.1| hypothetical protein UCYN_07210 [cyanobacterium UCYN-A] gi|284809720|gb|ADB95417.1| uncharacterized conserved protein [cyanobacterium UCYN-A] Length = 125 Score = 75.4 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 1/112 (0%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L I + PVI+EM V + K +L+ + N++L DC ++S+ + I Sbjct: 5 LIQQIIDLTTPVIKEMGIDIVNVVFHTNKCPSILRFDISNPAENISLDDCAKVSRTLESI 64 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 LD II Y LEVSSPGI + + + DF + G + +K+++ Sbjct: 65 LDETTIIPHAYVLEVSSPGISQILNSERDFTTFQGFAIGIMTSPPYLNKERM 116 >gi|154148890|ref|YP_001407189.1| hypothetical protein CHAB381_1677 [Campylobacter hominis ATCC BAA-381] gi|259585737|sp|A7I3U8|RIMP_CAMHC RecName: Full=Ribosome maturation factor rimP gi|153804899|gb|ABS51906.1| conserved hypothetical protein [Campylobacter hominis ATCC BAA-381] Length = 140 Score = 75.0 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 71/144 (49%), Gaps = 13/144 (9%) Query: 29 IQPVIEEMSFRSVQISLLEEKNLLL-QIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 + + E + L+ E + + ++++ + + + L DCE LS+ +SPILDVE Sbjct: 4 LNALCSECGVKFYADELISENSRQIYRVYITKKN-GVNLDDCEALSRLLSPILDVEPPTS 62 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 G + LEVSSPG++R + S+F G +V + +K+ G+I+ + L Sbjct: 63 GAFTLEVSSPGLERKLTTPSNFENSLGELVKITLKNG----EKISGEILSFKDEILKL-- 116 Query: 148 EKRGEKDMNELQIAISFDSLLSAR 171 K +I+++F+ + A+ Sbjct: 117 -----KTAENNEISVNFNEIKKAK 135 >gi|332878282|ref|ZP_08446008.1| hypothetical protein HMPREF9074_01747 [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683733|gb|EGJ56604.1| hypothetical protein HMPREF9074_01747 [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 155 Score = 75.0 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 61/162 (37%), Gaps = 17/162 (10%) Query: 19 MGLAGDISSVIQPVIEEM-SFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M + +++ +E + + + + + + I + + + DC LS+A+ Sbjct: 1 MNFKDQVKALVDKALEATPTLFLTDLKVSADNAITVVIDGDN---GVGIDDCIALSRAVE 57 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD E + LEV+S G P V + + G V + G + G Sbjct: 58 APLDAEGA---DFSLEVTSFGATEPFVLPRQYAKNVGRTVQITTTDG----KVQEGVLKG 110 Query: 138 TSETGFFLEKEKRGEKDMNELQIA------ISFDSLLSARLI 173 ++ LE E R K + + +I + + A++I Sbjct: 111 EADGVVTLETETREPKPVGKGKITVKKEHSFALSDIKEAKVI 152 >gi|313680245|ref|YP_004057984.1| hypothetical protein Ocepr_1355 [Oceanithermus profundus DSM 14977] gi|313152960|gb|ADR36811.1| protein of unknown function DUF150 [Oceanithermus profundus DSM 14977] Length = 147 Score = 75.0 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 7/132 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVER-DDGNMTLRDCEELSQAISPILD 81 D+ +++ V+ + + +++ L K +L + +ER D+ +T+ D + ++ I LD Sbjct: 2 DLWELVENVVRPLGYEPLEVRLHGAGKTQVLTVRLERLDEAPITVADLQRANRIIGLELD 61 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + I G YRLEV SPG DRP++ + F R+ G V G+++ E Sbjct: 62 RADPIRGSYRLEVESPGPDRPLLTRRHFERFAGLKVKVRTEEGG-----FTGRVVEVGED 116 Query: 142 GFFLEKEKRGEK 153 E + Sbjct: 117 AVTFELAGGERR 128 >gi|213864825|ref|ZP_03386944.1| hypothetical protein SentesT_33610 [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 82 Score = 75.0 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 8/85 (9%) Query: 90 YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEK 149 Y LEVSSPG+DRP+ + R+ G V + ++ +++K G I + E Sbjct: 4 YNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVEG 63 Query: 150 RGEKDMNELQIAISFDSLLSARLIV 174 + E + ++ A L+ Sbjct: 64 KDEV--------FALSNIQKANLVP 80 >gi|259645134|sp|A5GVG1|RIMP_SYNR3 RecName: Full=Ribosome maturation factor rimP Length = 155 Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 57/152 (37%), Gaps = 10/152 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVER--DDGNMTLRDCEELSQAISPIL 80 I ++ + + F + L + I R D ++ L DC SQA L Sbjct: 7 EPIEALASATAQSLGFLMESVVLHSHRAPQALIVAVRKGDGSDVNLDDCASFSQAFGEAL 66 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + ++ G Y LE++SPG+ + + DF + G V + G + + G ++G Sbjct: 67 ETGELLTGAYVLEITSPGLGDVLQQDRDFRSFRGFPVCVRQRDAKGGEIQREGTLLGRDA 126 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 L R + I +L RL Sbjct: 127 DAVELNLRGRIQ--------RIPRSDVLEVRL 150 >gi|260910868|ref|ZP_05917512.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] gi|260635019|gb|EEX53065.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] Length = 167 Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 21/136 (15%), Positives = 55/136 (40%), Gaps = 10/136 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + +++ + + + V + + ++++ ++ D + + DC ELS+ I L+ + Sbjct: 20 VKQLVEQWLADKEYFLVDVETSPDSRIVVE--IDHAD-GVWIEDCVELSRFIEEHLNRDE 76 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S G+ +P ++ + G V +K G + F Sbjct: 77 ---EDYELEVGSAGLGQPFKVPQQYVNFIGKEVEVLDKDG----KKYKGTLKSVDGNDFV 129 Query: 145 LEKEKRGEKDMNELQI 160 + ++ + + + + Sbjct: 130 VTVNEKVKVEGKKRPV 145 >gi|332670043|ref|YP_004453051.1| hypothetical protein Celf_1529 [Cellulomonas fimi ATCC 484] gi|332339081|gb|AEE45664.1| protein of unknown function DUF150 [Cellulomonas fimi ATCC 484] Length = 193 Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 70/169 (41%), Gaps = 9/169 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFV----ERDDGNMTLRDCEE 71 A + V++P + E+ + + + V E D+G + L E Sbjct: 1 MVAPAPAQRVRQVVEPAVAEVGLLLEDVEVTRAGAHSVVRVVVDVPEDDEGELDLDRVAE 60 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +++A+S LD ++++ G Y LEVSSPG+ RP+ ++ F R G V+ +V +L Sbjct: 61 VTRAVSDALDAQDVVAGEYTLEVSSPGVSRPLTQRRHFARAVGRSVSVRLVDGGSVSGRL 120 Query: 132 IGKIMGTSETGFFLEKEK-----RGEKDMNELQIAISFDSLLSARLIVT 175 G + + +G + N + I + AR+ V Sbjct: 121 TAVERGAQDADDAVVVVPVTPGLKGRRPKNGAPVRILLADVRDARVEVD 169 >gi|163753870|ref|ZP_02160993.1| hypothetical protein KAOT1_19647 [Kordia algicida OT-1] gi|161326084|gb|EDP97410.1| hypothetical protein KAOT1_19647 [Kordia algicida OT-1] Length = 155 Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 70/161 (43%), Gaps = 17/161 (10%) Query: 22 AGDISSVIQPVIEEMS-FRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++ ++Q V+EE S + + +++ I + +TL DC ++S+ I L Sbjct: 3 KEKVTKLLQEVLEEESSLFLISKEIQAGNKIVIVIDGDN---GVTLNDCMKVSRHIEHNL 59 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D E + LEV S GI + + + G + + + QK+ G ++ + Sbjct: 60 DREE---EDFSLEVLSSGISEGITHIRQYKKNVGRKLEIIMADN----QKVTGTLVEADD 112 Query: 141 TGFFLEKEKRGEKDMNELQI------AISFDSLLSARLIVT 175 L+ + R K + + +I I + ++ A+++VT Sbjct: 113 EKVKLQWKAREPKPIGKGKITVQKEQEIPYKDIVKAKVMVT 153 >gi|325299859|ref|YP_004259776.1| Ribosome maturation factor rimP [Bacteroides salanitronis DSM 18170] gi|324319412|gb|ADY37303.1| Ribosome maturation factor rimP [Bacteroides salanitronis DSM 18170] Length = 155 Score = 74.3 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 62/153 (40%), Gaps = 16/153 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +++ ++ + V +S+ + ++++ ++ D + + DC +LS+ I L E+ Sbjct: 7 VTRIVEEWLDGKDYFLVDVSVSPDDKIVVE--IDHAD-GVWIDDCVDLSRYIESRLSRED 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET--- 141 Y LEV S GI +P + + G V +K G + +E Sbjct: 64 ---EDYELEVGSAGIGQPFKVLKQYQIYIGKEVEV----MDNTGKKWKGVLADANEENFT 116 Query: 142 ---GFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 ++ E + E + ++D + + Sbjct: 117 VTMTVKVKPEGAKRPKLVEQNVTFTYDEIKYTK 149 >gi|311744142|ref|ZP_07717948.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272] gi|311313272|gb|EFQ83183.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272] Length = 160 Score = 74.3 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 72/156 (46%), Gaps = 13/156 (8%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + +++++ +E +++ + +L++ ++ DD + + +++A++ + Sbjct: 1 MDERFTALVRSCVEPEGLELDDLTISAAGRKRVLRVALDSDD-GVGIDQITAVTRALNAV 59 Query: 80 LDVEN-----IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 LD + + Y LEV+S G+ P+ + R +G +V E+ + + G+ Sbjct: 60 LDDDPAAVAALGGTPYTLEVTSRGVSSPLTSPRHWRRNHGRLVKVELTDGAVE----TGR 115 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 I +++T L +++R + + I++ + A Sbjct: 116 ITSSTDTHATLAQQERRGAPTDIRE--IAYPEVARA 149 >gi|78213594|ref|YP_382373.1| hypothetical protein Syncc9605_2078 [Synechococcus sp. CC9605] gi|123577663|sp|Q3AHW4|RIMP_SYNSC RecName: Full=Ribosome maturation factor rimP gi|78198053|gb|ABB35818.1| conserved hypothetical protein [Synechococcus sp. CC9605] Length = 155 Score = 74.3 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 56/141 (39%), Gaps = 2/141 (1%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDG-NMTLRDCEELSQAISPILD 81 D+ ++ V F I LL + L++ + G +++L DC S + L+ Sbjct: 8 DLETLATKVAASKGFALCGIQLLTHMSPMTLEVQIRHSSGADVSLDDCAGFSGVLGDALE 67 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 ++ Y LE+SSPGI + DF + G V +Q+L G ++ Sbjct: 68 ASTLLTDAYVLEISSPGIGDQLSSDRDFETFRGFPVEVHHRDKDDSEQRLEGLLLERDAD 127 Query: 142 GFFLEKEKRGEKDMNELQIAI 162 + R ++ + I + Sbjct: 128 TLQINIRGRIKRIARDCVIGV 148 >gi|260436689|ref|ZP_05790659.1| conserved hypothetical protein [Synechococcus sp. WH 8109] gi|260414563|gb|EEX07859.1| conserved hypothetical protein [Synechococcus sp. WH 8109] Length = 155 Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 58/141 (41%), Gaps = 2/141 (1%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDG-NMTLRDCEELSQAISPILD 81 D+ +++ V F I LL + L++ + G +++L DC S + L+ Sbjct: 8 DLETLVTDVASSKGFALCGIQLLTHMSPMTLEVQIRHSSGADVSLDDCAGFSGVLGDALE 67 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 ++ Y LE+SSPGI + DF + G V + +Q+L G ++ Sbjct: 68 ASTLLTDAYVLEISSPGIGDQLSSDRDFETFRGFPVEVHHRDNDDSEQRLEGLLLERDAD 127 Query: 142 GFFLEKEKRGEKDMNELQIAI 162 + R ++ + I + Sbjct: 128 TLQINIRGRIKRIPRDCVIGV 148 >gi|183981904|ref|YP_001850195.1| hypothetical protein MMAR_1891 [Mycobacterium marinum M] gi|226696166|sp|B2HKR9|RIMP_MYCMM RecName: Full=Ribosome maturation factor rimP gi|183175230|gb|ACC40340.1| conserved hypothetical protein [Mycobacterium marinum M] Length = 177 Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 51/147 (34%), Gaps = 8/147 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ + + + V D + L LS++ S +LD Sbjct: 10 QVIELLGGEFARAGYEIEDVVIDHRARPPRITVVADGDTTLDLDTIAVLSRSASSLLDSL 69 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I Y LEVSSPGIDRP+ + F R G V + S L G+I Sbjct: 70 DNIGDSYVLEVSSPGIDRPLTSEKHFRRARGRKVELTLADGSQ----LTGRIGALQSGSL 125 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSA 170 L E + E I + A Sbjct: 126 DLVVRAGREWKVRE----IPLAEVEKA 148 >gi|256832249|ref|YP_003160976.1| hypothetical protein Jden_1017 [Jonesia denitrificans DSM 20603] gi|256685780|gb|ACV08673.1| protein of unknown function DUF150 [Jonesia denitrificans DSM 20603] Length = 177 Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 64/163 (39%), Gaps = 19/163 (11%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDG---NMTLRDCEE 71 + + + + P++ + + L +++ V+ + + L Sbjct: 1 MARLDVPTQVHDAVAPIVHDAGLFLEDLEYLGSGPTTTIRVTVDLPEDVSGPVGLETISS 60 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+ +S LD +++ Y LEVSSPG RP+ + F R G +++ + V ++ Sbjct: 61 VSRDLSTALDSVSVLHSQYTLEVSSPGTSRPLTQPRHFRRNVGRLISVKTVNG----ERF 116 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +++ ++ + + ++ + A++ V Sbjct: 117 TERLVEVTDDAVLF-----------DTRRHVALADIRRAKVEV 148 >gi|237749787|ref|ZP_04580267.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] gi|229374652|gb|EEO25043.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] Length = 167 Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 39/165 (23%), Positives = 72/165 (43%), Gaps = 15/165 (9%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + D+ I+ +I + I LL+E +++L+I + + + ++L DCE +S I+P+ Sbjct: 2 ITQDLHDKIESLITQKGLELYDIELLKENESMILRISIFKKE-GISLDDCENISTLIAPL 60 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LDVE Y LEVSSPG++R + + FL G VA + +K + G + + Sbjct: 61 LDVELSDLEAYHLEVSSPGVERNLKKPKHFLCSIGQKVAVTMS----NKTIINGILESYN 116 Query: 140 ETGFFLEKEKRGEKDM---------NELQIAISFDSLLSARLIVT 175 +++ + K I + + I Sbjct: 117 TDEITIKEILKPTKKKQNNLKESSQEVKTHIIKLNETKKVKTIFD 161 >gi|332883099|gb|EGK03383.1| hypothetical protein HMPREF9456_02020 [Dysgonomonas mossii DSM 22836] Length = 187 Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 60/149 (40%), Gaps = 10/149 (6%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + M I + + +E + V + + +++++ D +++ DC LS+ Sbjct: 29 LVKKMIEKELIRDITEKYLEGTTMFLVDVVVKPGNAIVVEV---DSDEGVSIDDCIALSR 85 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 I LD E + LEV S GI P+ + ++ G+ V QKL G Sbjct: 86 NIESHLDRE---AEDFELEVGSAGITSPLKIPRQYKKYIGNEVEVLTKKG----QKLSGV 138 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAIS 163 + + F + K + D + ++A+ Sbjct: 139 LKSCDDNSFVITVTKMVKPDGGKKKVAVD 167 >gi|325286755|ref|YP_004262545.1| Ribosome maturation factor rimP [Cellulophaga lytica DSM 7489] gi|324322209|gb|ADY29674.1| Ribosome maturation factor rimP [Cellulophaga lytica DSM 7489] Length = 154 Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 72/160 (45%), Gaps = 17/160 (10%) Query: 22 AGDISSVIQPVIEEM-SFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++S+++ ++E S + ++ + + + + + +TL+DC +S+AI L Sbjct: 3 KEQVTSLLEGALKETPSLFLIDFTITPDFKINIVLDGDN---GVTLKDCVAVSRAIDHNL 59 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D E + +EV+S G P+V + + G + + + + G++ +E Sbjct: 60 DREE---QDFSVEVASAGASSPLVLPRQYAKNIGRKLEVKTIEG----RNFEGQLTAATE 112 Query: 141 TGFFLEKEKRGEKDMNELQI------AISFDSLLSARLIV 174 LE + R +K + + ++ I F + A++++ Sbjct: 113 ETITLEWKAREQKPVGKGKVTVQKKEEILFSDIKEAKVVL 152 >gi|159904154|ref|YP_001551498.1| hypothetical protein P9211_16131 [Prochlorococcus marinus str. MIT 9211] gi|159889330|gb|ABX09544.1| DUF150 [Prochlorococcus marinus str. MIT 9211] Length = 171 Score = 73.5 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 59/146 (40%), Gaps = 2/146 (1%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVER-DDGNMTLRDCEELSQAISP 78 + + + + V++ K + +Q+ +++ +++L DC + S+ IS Sbjct: 21 IVTSLKILASNTAADKGLEVVELKFNPHSKPITIQVQIQKKPKKDVSLDDCAQFSELISE 80 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +++ +I Y LE+SSPG+ + DF + G + + K G + Sbjct: 81 TIELSKLINEPYLLEISSPGLGDLLQTDKDFKTFKGFPIEVLFKNNENTKLTKSGLLHER 140 Query: 139 SETGFFLEKEKRGEKDMNELQIAISF 164 S+ + + R K E I + Sbjct: 141 SKEYLLINIKGRISKIPREDVITVQL 166 >gi|240172758|ref|ZP_04751417.1| hypothetical protein MkanA1_25812 [Mycobacterium kansasii ATCC 12478] Length = 177 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 55/148 (37%), Gaps = 10/148 (6%) Query: 24 DISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 + ++ + + + + + + D + L LS++ S +LD Sbjct: 10 QVIELLGGAFACAGYEIEDVVIDTRAHPPRITVVADG-DTALDLDTIAALSRSASALLDG 68 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 + I Y LEVSSPG++RP+ + F R G + + S +L G++ + Sbjct: 69 LDAIRDKYVLEVSSPGVERPLTSEKHFRRARGRKIELTLADGS----RLTGRVGELTGDT 124 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSA 170 L + + I +L A Sbjct: 125 LALVIRQGRNWAVR----QIPLAQVLKA 148 >gi|327403852|ref|YP_004344690.1| Ribosome maturation factor rimP [Fluviicola taffensis DSM 16823] gi|327319360|gb|AEA43852.1| Ribosome maturation factor rimP [Fluviicola taffensis DSM 16823] Length = 158 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 79/158 (50%), Gaps = 13/158 (8%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + + + I+E R + L ++++ +++ +GN+++ DC +S+ I LD Sbjct: 4 KQTVKELAEERIKERDERLFIVELTISSTNVIRLELDKTEGNVSIEDCMSVSRNIEHNLD 63 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 E+ + L VSS G+D+P+ + +++ G + ++ K+K+ G ++ ET Sbjct: 64 REDA---DFELSVSSAGLDKPLRVHAQYVKNIGRGLDVKLKS----KEKVTGTLISVDET 116 Query: 142 GFFLE------KEKRGEKDMNELQIAISFDSLLSARLI 173 G L+ E + +K++ ++ I+F + A+++ Sbjct: 117 GVVLQHEEKQAIEGKKKKELVVIENKIAFSDINEAKIV 154 >gi|260060677|ref|YP_003193757.1| hypothetical protein RB2501_03740 [Robiginitalea biformata HTCC2501] gi|88784807|gb|EAR15976.1| hypothetical protein RB2501_03740 [Robiginitalea biformata HTCC2501] Length = 157 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 67/161 (41%), Gaps = 18/161 (11%) Query: 21 LAGDISSVIQPVIEEM-SFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L +S ++ + + + + + +Q+ ++ D+ ++L+DC ++S+A+ Sbjct: 6 LEKRVSELLDEALAGRPELFLIDLKVNP--DQSIQVTLDGDE-GISLQDCMDISRAVEHS 62 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + ++ LEV S G P++ + + G +A +++ G + Sbjct: 63 LDRDEF---NFSLEVGSAGATAPLLMPRQYRKHIGRKLAVR-----RAGKEVQGTLTAAD 114 Query: 140 ETGFFLEKEKRGEKDMNE------LQIAISFDSLLSARLIV 174 + L + R K + + + I + A++++ Sbjct: 115 DKDITLSWKAREPKPVGKGKHTVRKEETIPHSEIEQAKVVL 155 >gi|119717417|ref|YP_924382.1| hypothetical protein Noca_3193 [Nocardioides sp. JS614] gi|166988630|sp|A1SLL0|RIMP_NOCSJ RecName: Full=Ribosome maturation factor rimP gi|119538078|gb|ABL82695.1| protein of unknown function DUF150 [Nocardioides sp. JS614] Length = 175 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 65/149 (43%), Gaps = 15/149 (10%) Query: 24 DISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 I + + + + + + K +L++ V++ DG +TL + E ++ ++ +LD Sbjct: 12 QIEAELDDPLRALGLDIEAVEITPAGKRRILRVAVDK-DGGVTLDEVAEATREVNRVLDG 70 Query: 83 ENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 ++ E Y LEV+S G+DRP+ + R G +V + G+I+ ++E Sbjct: 71 SEVMGEQPYTLEVTSRGVDRPLTLPRHWRRNAGRLVKVAFADG----RAATGRILDSNEE 126 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSA 170 L+ + +++ + A Sbjct: 127 QVTLDVGGTRQ--------QVAYAEVKKA 147 >gi|198277416|ref|ZP_03209947.1| hypothetical protein BACPLE_03630 [Bacteroides plebeius DSM 17135] gi|198269914|gb|EDY94184.1| hypothetical protein BACPLE_03630 [Bacteroides plebeius DSM 17135] Length = 155 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 65/153 (42%), Gaps = 16/153 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +++ +E+ S+ V +++ + ++++ ++ + + + DC ELS+ I L E Sbjct: 7 VARIVEEWLEDKSYFLVDVNVSPDDKIVVE--IDHAE-GVWIDDCVELSRYIESKLSREE 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S GI +P ++ G V +K G + +E F Sbjct: 64 ---EDYELEVGSAGIGQPFKVLQQYVAHVGCEVEVLDKTG----KKWTGVLADANEENFT 116 Query: 145 LEKEKRGEKDMN------ELQIAISFDSLLSAR 171 + E + + + E + ++D + + Sbjct: 117 VTVEVKIKPEGAKRPKLVEQNVTFTYDEIKYTK 149 >gi|269795642|ref|YP_003315097.1| hypothetical protein Sked_23480 [Sanguibacter keddieii DSM 10542] gi|269097827|gb|ACZ22263.1| uncharacterized conserved protein [Sanguibacter keddieii DSM 10542] Length = 181 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 67/171 (39%), Gaps = 17/171 (9%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGN---MTLRDCEE 71 +A ++ ++P +E + + ++++ ++ + + L E Sbjct: 1 MAASPIAEQVADAVRPGVESAGLVLEDVQVAPAGARTVVRVVLDLTEDQTGALGLDQVAE 60 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+ IS LD + G + LEV+SPG RP+ F R +VA +V + Sbjct: 61 VSRVISDTLDTLPALPGKFTLEVTSPGTSRPLTELRHFKRARTRLVAVTLVEGAP----F 116 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS 182 ++ + E + + F ++ S ++ V EL RA+ Sbjct: 117 TERLTSVEDEVLVFE-------GADGAPHEVPFAAVSSGQVEV--ELKRAA 158 >gi|32266338|ref|NP_860370.1| hypothetical protein HH0839 [Helicobacter hepaticus ATCC 51449] gi|34222773|sp|P59821|RIMP_HELHP RecName: Full=Ribosome maturation factor rimP gi|32262388|gb|AAP77436.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 157 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 73/165 (44%), Gaps = 22/165 (13%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDG----------NMTLRDC 69 L+ + I+ + + I +E +L++ + R ++L+DC Sbjct: 2 LSQHTQARIEQLAATLGLYIYDIDFFKEDNRPILRVSITRKAPMQKQDCKNGLAVSLQDC 61 Query: 70 EELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ 129 + +S+ ISP+LDVE+ Y LEVSSPG++R + + ++ G V+ +++ K Sbjct: 62 QNVSELISPLLDVEDENLKDYNLEVSSPGLERVLKKPQHYIYSLGEKVSIKLMD----KS 117 Query: 130 KLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + G + +E + + + ++ SF + +++ Sbjct: 118 VIEGILHDVNEN-VSISID------TGKEILSFSFADMKKIKVVF 155 >gi|305665254|ref|YP_003861541.1| hypothetical protein FB2170_03110 [Maribacter sp. HTCC2170] gi|88710007|gb|EAR02239.1| hypothetical protein FB2170_03110 [Maribacter sp. HTCC2170] Length = 153 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 69/161 (42%), Gaps = 18/161 (11%) Query: 21 LAGDISSVIQPVI-EEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + S++ + ++ S + ++ + ++ + + + ++++DC ++S+ I Sbjct: 2 LKDKVKSLLNEALSQDESLFLIDFTMGADNSINVVLDGDN---GVSVQDCMKVSRGIEHN 58 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD E + L V+S G PMV + + G V + + + G + S Sbjct: 59 LDREE---EDFSLTVTSAGAASPMVNPRQYQKNIGRKVKVQTLENV-----YEGNLTAAS 110 Query: 140 ETGFFLEKEKRGEKDMNELQI------AISFDSLLSARLIV 174 G LE + R K + + + I+F + A++I+ Sbjct: 111 TNGIVLEWKAREPKPIGKGKTTVQKKKEITFSDIKEAKVIL 151 >gi|325105521|ref|YP_004275175.1| protein of unknown function DUF150 [Pedobacter saltans DSM 12145] gi|324974369|gb|ADY53353.1| protein of unknown function DUF150 [Pedobacter saltans DSM 12145] Length = 153 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 72/156 (46%), Gaps = 10/156 (6%) Query: 19 MGLAGDISSVIQPVIEEM-SFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M + + + + +++ V + + +K LL D +T+ DC ++S+ + Sbjct: 1 MSVEQRVRELAEEKLQDREDLFIVSVKVQNKKITLLL----DGDNGITIEDCAKVSRHVG 56 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 L+ EN++ Y+LEV S G+D +V + + G + +V + + GK++G Sbjct: 57 YHLEEENLMTEAYQLEVGSAGLDAALVLDRQYQKNIGRNL---LVKKVDGSK-IEGKLIG 112 Query: 138 TSETGFFLEKE-KRGEKDMNELQIAISFDSLLSARL 172 + T + E K K ++ I +++ SA++ Sbjct: 113 ANPTNLVISHEVKEKGKKAQTVETVIEKENIASAKV 148 >gi|311748746|ref|ZP_07722531.1| hypothetical protein ALPR1_20868 [Algoriphagus sp. PR1] gi|126577280|gb|EAZ81528.1| hypothetical protein ALPR1_20868 [Algoriphagus sp. PR1] Length = 157 Score = 72.7 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 73/153 (47%), Gaps = 7/153 (4%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELSQAIS 77 L I +++ + + S V+++L+ + L I ++ D + ++ C +S+A++ Sbjct: 2 SELKQAIEEIVEKHLPDESHFVVEVNLVPKSGKTVLSILID-ADQGLNVQTCANVSRAVA 60 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 L+ + ++ Y LEVSSPG+D P+ + F + G + + L GK++ Sbjct: 61 EELEAKELMSEAYILEVSSPGVDYPLSSRRQFQKNIGRELKVLLTSGQE----LKGKLLE 116 Query: 138 TSETGFF-LEKEKRGEKDMNELQIAISFDSLLS 169 TG L K+K K E ++ +SF+ + Sbjct: 117 VDTTGVKMLVKKKEKGKKATEEEVVLSFEEMKK 149 >gi|213852789|ref|ZP_03382321.1| hypothetical protein SentesT_07966 [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 82 Score = 72.7 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 8/85 (9%) Query: 90 YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEK 149 Y LEVSSPG+DRPM + R+ G VA + ++ +++K G I + E Sbjct: 4 YNLEVSSPGLDRPMFTADHYARFQGEEVALVLRMAVQNRRKWQGIIKAVDGEMITVTVEG 63 Query: 150 RGEKDMNELQIAISFDSLLSARLIV 174 + E + ++ A L+ Sbjct: 64 KDEV--------FALSNIQKANLVP 80 >gi|302558073|ref|ZP_07310415.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000] gi|302475691|gb|EFL38784.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000] Length = 173 Score = 72.7 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 67/154 (43%), Gaps = 9/154 (5%) Query: 23 GDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +++P++ +I++ + +L++ V+ D L ++S+A+S LD Sbjct: 7 ERLRELLEPLVSSQGLDLEEIAVDSVGRKRVLRVVVDS-DTGADLDRIADVSRALSAKLD 65 Query: 82 VENIIEG-HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 + + Y LEV +PG +R + ++R G +V ++ L +I+ + Sbjct: 66 ETDAMGSAEYTLEVGTPGAERLLTEHRHYVRATGRLVRFQLAEGGE----LDARILRADD 121 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G LE + ++FD + AR+ V Sbjct: 122 EGLDLEVPGVKGRKATAR--RLAFDDITRARVQV 153 >gi|320531906|ref|ZP_08032816.1| conserved domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320135875|gb|EFW27913.1| conserved domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 172 Score = 72.7 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 65/171 (38%), Gaps = 10/171 (5%) Query: 8 HSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLR 67 + +PR D LA ++ ++ PV+ + + + + Sbjct: 5 DPRQDPRKRAD-ALARSLTDLLVPVVNDAGLHLEGVETTRAGKYSVVRVLVDLVDGPGDL 63 Query: 68 DCEE---LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS 124 D + ++ A+S LD + ++G Y LEVS+PG +R + F R GH V Sbjct: 64 DLDSLGPVTAAVSQALDEADPVKGQYTLEVSTPGAERELTTLRHFRRAVGHSVRVRTADD 123 Query: 125 SGDKQKLIGKIMGTSETGFFLEKEKR-GEKDMNELQIAISFDSLLSARLIV 174 +L G + G E ++ ++ I+ + AR++V Sbjct: 124 -----ELTGVVTAADGDGDASEHNGGMVRIKVDGVEDRIALGDITEARMVV 169 >gi|259016314|sp|Q3AZB4|RIMP_SYNS9 RecName: Full=Ribosome maturation factor rimP Length = 155 Score = 72.7 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 55/151 (36%), Gaps = 10/151 (6%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDD-GNMTLRDCEELSQAISPILD 81 ++ + Q V F I LL + LQ+ + ++ L DC S + L+ Sbjct: 8 ELEQLTQRVAGLQGFELCGIQLLTHMNPITLQVQIRHTSGSDVNLDDCAGFSGVLGEALE 67 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + Y LE+SSPGI + DF + G V + +L G + + Sbjct: 68 ESQQLVEAYVLEISSPGIGEQLSCDRDFQTFRGFPVDVTHRDQGNVEHRLEGLLHERNTD 127 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + R + +I D ++ RL Sbjct: 128 SLQINIRGRIK--------SIPRDQVIEVRL 150 >gi|184201253|ref|YP_001855460.1| hypothetical protein KRH_16070 [Kocuria rhizophila DC2201] gi|259585800|sp|B2GKR8|RIMP_KOCRD RecName: Full=Ribosome maturation factor rimP gi|183581483|dbj|BAG29954.1| hypothetical protein [Kocuria rhizophila DC2201] Length = 163 Score = 72.7 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 67/156 (42%), Gaps = 11/156 (7%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGN--MTLRDCEELSQAISPI 79 I + ++PV+ + L LQ+ V+ DG + L ++Q IS Sbjct: 7 APIRATVEPVVAAAGLHLEECELKGQGATRTLQVLVDLPDGTEALGLDRVAAVAQEISDA 66 Query: 80 LDVENIIEGH-YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LD ++ + G Y LEVSSPG R + + R GH+V + ++ +++ Sbjct: 67 LDRDDPVPGPPYELEVSSPGATRTLETPRHWRRTVGHLVRIRTLEG----ERYTARLLEA 122 Query: 139 SETGFFLEKEKRGEKDMNELQI---AISFDSLLSAR 171 E +++ + +K M + + + S+ +AR Sbjct: 123 HEDHAVVQRSHQPKKGMPVKLLDPERVDYASIRTAR 158 >gi|288928620|ref|ZP_06422466.1| conserved hypothetical protein [Prevotella sp. oral taxon 317 str. F0108] gi|288329604|gb|EFC68189.1| conserved hypothetical protein [Prevotella sp. oral taxon 317 str. F0108] Length = 154 Score = 72.7 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 21/136 (15%), Positives = 55/136 (40%), Gaps = 10/136 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + +++ + + + V + + ++++ ++ D + + DC ELS+ I L+ + Sbjct: 7 VKELVEQWLADKEYFLVDVETSPDSRIVVE--IDHAD-GVWIEDCVELSRFIEEHLNRDE 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S G+ +P ++ + G V +K G + F Sbjct: 64 ---EDYELEVGSAGLGQPFKVPQQYVNFIGKEVEVLDKDG----KKYKGILKSVDGNDFV 116 Query: 145 LEKEKRGEKDMNELQI 160 + ++ + + + + Sbjct: 117 VAVNEKVKVEGKKRPV 132 >gi|208434347|ref|YP_002266013.1| hypothetical protein HPG27_382 [Helicobacter pylori G27] gi|208432276|gb|ACI27147.1| hypothetical protein HPG27_382 [Helicobacter pylori G27] Length = 135 Score = 72.7 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 67/140 (47%), Gaps = 12/140 (8%) Query: 33 IEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYR 91 IE + + +SL++E +L++ ++ +G ++L C+++S+ ISP+LDV + I+ Y Sbjct: 2 IESLGYLLYDVSLVKENEQHILRVSLKNPNGAVSLDICQQVSEIISPLLDVCDFIQDAYI 61 Query: 92 LEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRG 151 LEVSS G++R + F G V ++ +K+ + ++ E E Sbjct: 62 LEVSSMGLERTLKTPKHFKLSLGEKVEVKLT----NKESFQAVLKDANDLSADFELEDHA 117 Query: 152 EKDMNELQIAISFDSLLSAR 171 K ++ + L + Sbjct: 118 IK-------SVEYKDLKKVK 130 >gi|205373421|ref|ZP_03226225.1| hypothetical protein Bcoam_09030 [Bacillus coahuilensis m4-4] Length = 112 Score = 72.7 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 58/112 (51%), Gaps = 1/112 (0%) Query: 51 LLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFL 110 ++L++++++ D + + +C +S+ + +D + I+ +Y LEVSSPG +RP+ ++ DF Sbjct: 1 MVLRVYIDK-DAGVDIEECGIVSERLGEKIDELDPIQHNYFLEVSSPGAERPLKKEKDFE 59 Query: 111 RWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAI 162 + G V + +++L + L + + K+ N+ + + Sbjct: 60 KAVGKQVYVKTYEPIEGEKELKVSYYKMIKILLLLRLQSKQRKEKNKKFLKV 111 >gi|28895280|ref|NP_801630.1| hypothetical protein SPs0368 [Streptococcus pyogenes SSI-1] gi|28810526|dbj|BAC63463.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1] Length = 127 Score = 72.7 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 55/129 (42%), Gaps = 7/129 (5%) Query: 48 EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD--VENIIEGHYRLEVSSPGIDRPMVR 105 + +L I V+++D +T+ D +L+ ISP+LD + Y LEVSSPG++RP+ Sbjct: 2 GSDYILSILVDKED-GITVEDTSDLTNIISPLLDTIDPDPFPNQYMLEVSSPGLERPLKT 60 Query: 106 KSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFD 165 G + + + + G ++ ++ + + I + Sbjct: 61 ADSLKAAVGSYINVSLYQAIDKVKVFQGDLLAFDGETLTIDYLDK----TRHKIVNIPYQ 116 Query: 166 SLLSARLIV 174 ++ R+ V Sbjct: 117 AVAKVRMAV 125 >gi|306820435|ref|ZP_07454071.1| protein of hypothetical function DUF150 [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551510|gb|EFM39465.1| protein of hypothetical function DUF150 [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 153 Score = 72.3 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 37/160 (23%), Positives = 75/160 (46%), Gaps = 11/160 (6%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQA 75 + ++ V+ E + V + ++E + L+I +++ DG+MT+ DC +LS Sbjct: 1 MSKKIEQITEELVLRVLPEE-YEMVDVEYVKEAGEMYLRILIDK-DGSMTIDDCVKLSGI 58 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD-KQKLIGK 134 I +D ++ I+ Y LE+SSPG+DR + + DF+R G V ++ ++ + Sbjct: 59 IGDEIDKKDYIKDAYNLEISSPGLDRTLKKDRDFVREKGKDVEVKLFKKDEKYGKEFVAV 118 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + G E G + ++E ++I + L + Sbjct: 119 LEGLDENGNVVFV-------IDEEVVSIDKKEIAKINLYL 151 >gi|46198658|ref|YP_004325.1| putative cytoplasmic protein [Thermus thermophilus HB27] gi|55980671|ref|YP_143968.1| hypothetical protein TTHA0702 [Thermus thermophilus HB8] gi|51316688|sp|Q72KG3|RIMP_THET2 RecName: Full=Ribosome maturation factor rimP gi|62299029|sp|Q56425|RIMP_THET8 RecName: Full=Ribosome maturation factor rimP gi|46196281|gb|AAS80698.1| hypothetical cytosolic protein [Thermus thermophilus HB27] gi|55772084|dbj|BAD70525.1| conserved hypothetical protein [Thermus thermophilus HB8] Length = 157 Score = 72.3 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 8/133 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + D+ +++ + + +++ + LL +D+ +T+ D EE S+ I L Sbjct: 15 VTVDLWQLVEEAVSPLGLDVLEVHF--ARGELLVRLERKDERPITVADLEEASRHIEAAL 72 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D E+ I G YRL V SPG RP+ + F R+ G + G+I+ Sbjct: 73 DREDPIPGSYRLLVESPGPKRPLFTRRHFERFQGLKAKV------PGPEGFTGRILRVEG 126 Query: 141 TGFFLEKEKRGEK 153 + + Sbjct: 127 EEVVFQVGDEERR 139 >gi|326382938|ref|ZP_08204628.1| ribosome maturation protein RimP [Gordonia neofelifaecis NRRL B-59395] gi|326198528|gb|EGD55712.1| ribosome maturation protein RimP [Gordonia neofelifaecis NRRL B-59395] Length = 181 Score = 72.3 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 68/157 (43%), Gaps = 8/157 (5%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 L GDI V+ + E + ++++ ++I V+R DG +L +LS+ Sbjct: 1 MTADALTGDIGDVLTAPLAEHGYDLEEVAILTPPGRREIRIVVDR-DGGASLDALADLSR 59 Query: 75 AISPILDVENIIEGH-YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 A+ +LD +++ Y LE+++PGI RP+ + R G V E + G + + Sbjct: 60 ALESVLDDSDLLGESPYDLELTTPGIGRPLTLPRHWRRSQGRKVTAEYTV-DGAARTVEA 118 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 ++ + + L + + ++ ++ A Sbjct: 119 RVGESDDDQVTLVLVDKSRIK----TVDVALADIVRA 151 >gi|259586224|sp|A9BCI2|RIMP_PROM4 RecName: Full=Ribosome maturation factor rimP Length = 155 Score = 72.3 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 59/150 (39%), Gaps = 2/150 (1%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVER-DDGNMTLRDCEELSQ 74 + + + + V++ K + +Q+ +++ +++L DC + S+ Sbjct: 1 MSNPIVTSLKILASNTAADKGLEVVELKFNPHSKPITIQVQIQKKPKKDVSLDDCAQFSE 60 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 IS +++ +I Y LE+SSPG+ + DF + G + + K G Sbjct: 61 LISETIELSKLINEPYLLEISSPGLGDLLQTDKDFKTFKGFPIEVLFKNNENTKLTKSGL 120 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISF 164 + S+ + + R K E I + Sbjct: 121 LHERSKEYLLINIKGRISKIPREDVITVQL 150 >gi|227549049|ref|ZP_03979098.1| conserved hypothetical protein [Corynebacterium lipophiloflavum DSM 44291] gi|227078903|gb|EEI16866.1| conserved hypothetical protein [Corynebacterium lipophiloflavum DSM 44291] Length = 220 Score = 72.3 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 71/194 (36%), Gaps = 21/194 (10%) Query: 7 LHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTL 66 LH + E G+ ++ +I+P+ ++ + + D + TL Sbjct: 36 LHDRLER--MAFPGVDE-LTRLIEPIAAAHGMDVEKVRTVAAGKKSQVVIALDSDAHPTL 92 Query: 67 RDCEELSQAISPILDVENIIEG-----HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 + E +S +S + D Y LEV++PG+D P+ + R G +V Sbjct: 93 DELEAVSNELSELFDARENAGDINFGAGYTLEVTTPGVDLPLTEPRHWRRNRGRLV---- 148 Query: 122 VLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDM-------NELQIAISFDSLLSARLIV 174 + G+++ IG + E + E + + + I F++ SA+L + Sbjct: 149 --TVGEEKFRIGALDAAEEHVVLIATETKSPRAEVRPVSGLGPAVVEIEFNTPPSAQLQL 206 Query: 175 TDELLRASLNNYGS 188 + + Sbjct: 207 AELSFDQAAERAAD 220 >gi|320094044|ref|ZP_08025866.1| hypothetical protein HMPREF9005_0478 [Actinomyces sp. oral taxon 178 str. F0338] gi|319979023|gb|EFW10544.1| hypothetical protein HMPREF9005_0478 [Actinomyces sp. oral taxon 178 str. F0338] Length = 161 Score = 72.3 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 57/164 (34%), Gaps = 20/164 (12%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQI-SLLEEKNLLLQIFVERD-------DGNMTLR 67 + ++ PV+ + L+++ V+ + Sbjct: 1 MAHPARDARLEELLGPVVAREDLELDTVVRTRSGGTPLVRVTVDTPLVEGAGEQARVDSD 60 Query: 68 DCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD 127 +S+A+S LD + I+G Y LEVS+PG +R + + R G V ++ Sbjct: 61 TLAAVSRAVSAALDRADPIDGEYLLEVSTPGAERELTEPRHWKRQVGLPVRVKLRDGGH- 119 Query: 128 KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 + G++ + LE + I + ++ AR Sbjct: 120 ---VSGRVRAADDVSATLETDG--------GTTTIEYANMKKAR 152 >gi|157738248|ref|YP_001490932.1| hypothetical protein Abu_2045 [Arcobacter butzleri RM4018] gi|166980266|sp|A8EWD9|RIMP_ARCB4 RecName: Full=Ribosome maturation factor rimP gi|157700102|gb|ABV68262.1| conserved hypothetical protein (DUF150 domain protein) [Arcobacter butzleri RM4018] Length = 142 Score = 72.3 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 14/147 (9%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLL-QIFVERDDGNMTLRDCEELSQAISPILDVE 83 + I+ +E + + IS L E + + ++ + +G + L C E+S+ +SPILDVE Sbjct: 3 LEESIKLTVESLGAKLYDISTLREHDKNIFRVSI-TCEGGVNLDKCAEISRMLSPILDVE 61 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + G Y LEVSSPGI+R + + FL G V + + G+++ E Sbjct: 62 EPMNGEYLLEVSSPGIERKLKKVDHFLASIGEKVKVKNFA----TEVFKGELICADEEKI 117 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSA 170 ++ E E +++D++LSA Sbjct: 118 VIKTEFGNE--------ELTYDNILSA 136 >gi|15675575|ref|NP_269749.1| hypothetical protein SPy_1725 [Streptococcus pyogenes M1 GAS] gi|19746627|ref|NP_607763.1| hypothetical protein spyM18_1733 [Streptococcus pyogenes MGAS8232] gi|13622779|gb|AAK34470.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS] gi|19748846|gb|AAL98262.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232] Length = 127 Score = 72.3 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 55/129 (42%), Gaps = 7/129 (5%) Query: 48 EKNLLLQIFVERDDGNMTLRDCEELSQAISPILD--VENIIEGHYRLEVSSPGIDRPMVR 105 + +L I V++ +G +T+ D +L+ ISP+LD + Y LEVSSPG++RP+ Sbjct: 2 GSDYILSILVDK-EGGITVEDTSDLTNIISPLLDTIDPDPFPNQYMLEVSSPGLERPLKT 60 Query: 106 KSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFD 165 G + + + + G ++ ++ + + I + Sbjct: 61 ADSLKAAVGSYINVSLYQAIDKVKVFQGDLLAFDGETLTIDYLDK----TRHKIVNIPYQ 116 Query: 166 SLLSARLIV 174 ++ R+ V Sbjct: 117 AVAKVRMAV 125 >gi|89889479|ref|ZP_01200990.1| conserved hypothetical protein [Flavobacteria bacterium BBFL7] gi|89517752|gb|EAS20408.1| conserved hypothetical protein [Flavobacteria bacterium BBFL7] Length = 155 Score = 72.3 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 76/161 (47%), Gaps = 15/161 (9%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 L + ++ EE + + + +++ ++ D+ +T+ DC +S+A+ L Sbjct: 2 LKETVQDLLDDAFEER-PDLFLMEMSIDGANEIKVIIDGDE-GVTVADCIFISRAVEHNL 59 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D + + + LEV+S G P+ F R G ++ + + +K+K++G+++ + Sbjct: 60 DRDEL---DFSLEVASAGASAPLTLPRQFKRNVGR----QLEVINREKRKVVGQLVSADD 112 Query: 141 TGFFLEKEKRGEKDMNELQIA------ISFDSLLSARLIVT 175 ++ + R K + + ++ + +D + A++++T Sbjct: 113 ESIAIQWKAREPKPIGKGKVTVEKEWSLKYDDIKQAKVVIT 153 >gi|312139327|ref|YP_004006663.1| hypothetical protein REQ_19140 [Rhodococcus equi 103S] gi|311888666|emb|CBH47978.1| conserved hypothetical protein [Rhodococcus equi 103S] Length = 181 Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 62/146 (42%), Gaps = 12/146 (8%) Query: 27 SVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV-EN 84 ++ I + +++ ++ +++ V+ D + L + LS IS + D + Sbjct: 3 ELLADPIGREGYGLEDVTITLAGRHSSVRVMVDS-DSGLELDEVARLSHVISDVFDAASD 61 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 E Y LEV+SPGIDRP+ + R G V E+ + + G++ ++ G Sbjct: 62 FGESPYTLEVTSPGIDRPLTEGRHWRRAQGRKVLVELAE-----ESVTGRVGRLTDGGVD 116 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSA 170 L + +G + ++ + A Sbjct: 117 LVVKAKGGPVVRRVE----LADVKKA 138 >gi|315636536|ref|ZP_07891772.1| conserved hypothetical protein [Arcobacter butzleri JV22] gi|315479185|gb|EFU69882.1| conserved hypothetical protein [Arcobacter butzleri JV22] Length = 142 Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 14/147 (9%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLL-QIFVERDDGNMTLRDCEELSQAISPILDVE 83 + I+ +E + + IS L E + + ++ + +G + L C E+S+ +SPILDVE Sbjct: 3 LEESIKLTVESLGAKLYDISTLREHDKNIFRVSI-TCEGGVNLDKCAEISRMLSPILDVE 61 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + G Y LEVSSPGI+R + + FL G V + + G+++ E Sbjct: 62 EPMNGEYILEVSSPGIERKLKKVDHFLASIGEKVKVKNFA----TEVFKGELICADEEKI 117 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSA 170 ++ E E +++D++LSA Sbjct: 118 VIKTEFGNE--------ELTYDNILSA 136 >gi|72161179|ref|YP_288836.1| hypothetical protein Tfu_0775 [Thermobifida fusca YX] gi|91208371|sp|Q47RV4|RIMP_THEFY RecName: Full=Ribosome maturation factor rimP gi|71914911|gb|AAZ54813.1| conserved hypothetical protein [Thermobifida fusca YX] Length = 157 Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 5/131 (3%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 ++ ++ P++ E + + L V D + L E+SQ IS LD Sbjct: 8 ERLAQLVAPILAEAGLDLEGLDITPVGKRRLVRVVVDSDDGVDLERIGEVSQKISTALDE 67 Query: 83 ENIIEGH-YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 +++ Y LEV+SPG+DRP+ + R G +V +V + G+++ ET Sbjct: 68 VDVMGQSPYVLEVTSPGVDRPLTEPRHWRRARGRLVHAPLVAGGQ----VKGRVIDADET 123 Query: 142 GFFLEKEKRGE 152 G + + + + Sbjct: 124 GVTFDVDGQSQ 134 >gi|317504199|ref|ZP_07962193.1| conserved hypothetical protein [Prevotella salivae DSM 15606] gi|315664688|gb|EFV04361.1| conserved hypothetical protein [Prevotella salivae DSM 15606] Length = 186 Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 23/153 (15%), Positives = 59/153 (38%), Gaps = 16/153 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + +++ + + V I + ++ ++++ ++ D + + DC +LS+ I L + Sbjct: 38 VKKLVEEWLAGKEYFLVGIEISQDDKIVVE--IDHAD-GVWIEDCVDLSKYIEDHLSRDE 94 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S G+ +P ++ + G V +K G + F Sbjct: 95 ---EDYELEVGSAGLGQPFKVLQQYINFIGKEVEVLDADG----KKYQGVLKSVDGNDFT 147 Query: 145 ------LEKEKRGEKDMNELQIAISFDSLLSAR 171 ++ E + ++ + D++ + Sbjct: 148 VTVNEKVKVEGKKRPQKMDVDHTFNMDNVKYTK 180 >gi|296171599|ref|ZP_06852839.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894054|gb|EFG73816.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 175 Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 53/147 (36%), Gaps = 8/147 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ + + + + + D + L LS++ S +LD Sbjct: 10 QVIELLGGEFARAGYEIEDVVIDARARPPRIMVIADGDKALDLDTIATLSRSASALLDGL 69 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + + Y LEVSSPG+DRP+ + F R G V + S +L G++ T Sbjct: 70 DDVGDRYVLEVSSPGVDRPLTSEKHFRRARGRKVDVVLSDGS----RLTGRVGETRGDTV 125 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSA 170 L + I+ + A Sbjct: 126 ALVV----RAGRDYRLREIARADIAKA 148 >gi|189459825|ref|ZP_03008610.1| hypothetical protein BACCOP_00455 [Bacteroides coprocola DSM 17136] gi|189433435|gb|EDV02420.1| hypothetical protein BACCOP_00455 [Bacteroides coprocola DSM 17136] Length = 155 Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 61/153 (39%), Gaps = 16/153 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ +++ +E + V +++ + ++++ ++ + + + DC +LS+ I L+ E Sbjct: 7 VTRIVEEWLEGKDYFLVDVTVTPDDKIVVE--IDHAE-GVWIDDCVDLSRYIESKLNREE 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S GI +P ++ G V +K G + +E F Sbjct: 64 ---EDYELEVGSAGIGQPFKVLQQYIIHIGKEVEVLGKDG----KKWTGVLTDANEENFT 116 Query: 145 LEK------EKRGEKDMNELQIAISFDSLLSAR 171 + E + E + +D + + Sbjct: 117 ITVQVKVKPEGAKRPKLVEQNVTFVYDEIKYTK 149 >gi|124026597|ref|YP_001015712.1| hypothetical protein NATL1_18921 [Prochlorococcus marinus str. NATL1A] gi|123961665|gb|ABM76448.1| DUF150 [Prochlorococcus marinus str. NATL1A] Length = 183 Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 58/152 (38%), Gaps = 11/152 (7%) Query: 24 DISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVE--RDDGNMTLRDCEELSQAISPIL 80 ++ + F L +Q+ + D +T+ DC LSQ I + Sbjct: 35 ELKDLTAKSATNYGFDVTDFKMFTHLNPLSIQVNIRHKNPDKKVTIDDCSILSQYIDEAI 94 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 +I++ + LE+SS GI + + DF + G V +Q+ G ++ ++ Sbjct: 95 QGSSILDQPFNLEISSEGISDFLTEEKDFQTFKGFPVEVSYQDLKKIEQQTNGLLLKRTD 154 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + ++ + + I + ++ RL Sbjct: 155 NELQINQKGKTQ--------RIPVEDVIQVRL 178 >gi|313205356|ref|YP_004044013.1| hypothetical protein Palpr_2899 [Paludibacter propionicigenes WB4] gi|312444672|gb|ADQ81028.1| protein of unknown function DUF150 [Paludibacter propionicigenes WB4] Length = 155 Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 65/161 (40%), Gaps = 16/161 (9%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 M L I+ +++ ++ + V + + ++ + ++I ++L C EL++ I Sbjct: 1 MILKTTINQIVENYLDNTDYYLVDVKVTQDNRISVEI---DSFDGVSLEFCAELNRHIES 57 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 D E + LEVSS G+ P + + G+ V +KL G + Sbjct: 58 QFDRE---VEDFELEVSSAGLTEPFKVLKQYEKNIGNEVETLTK----GGKKLSGVLKEV 110 Query: 139 SETGFFLEKEKRGEKDMNE------LQIAISFDSLLSARLI 173 E F LE EK + + + + S++ + + I Sbjct: 111 HEDNFVLEIEKTEKPEGAKRKTTIIEDVTFSYEDIKYTKYI 151 >gi|154491956|ref|ZP_02031582.1| hypothetical protein PARMER_01586 [Parabacteroides merdae ATCC 43184] gi|154088197|gb|EDN87242.1| hypothetical protein PARMER_01586 [Parabacteroides merdae ATCC 43184] Length = 157 Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 65/153 (42%), Gaps = 16/153 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 IS +++ + V + + L+ I ++ D+ + + DC ELS+ + LD + Sbjct: 9 ISQLVEEKLASSGNYLVDVVIKPGN--LIIIEIDNDE-GVCIDDCAELSRYVEGHLDRD- 64 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 + LEV S GI P +++ G+ V + + KL G + E G Sbjct: 65 --VEDFELEVGSAGITSPFKVLRQYVKNIGNEVEMLLKSGT----KLTGVLKSADENGVV 118 Query: 145 LEKEKRGEKDMNELQIAI------SFDSLLSAR 171 + EK+ + + + ++ + +FD + + Sbjct: 119 VTVEKQVKPEGAKRKVTVREDQSYTFDEIKYTK 151 >gi|239928613|ref|ZP_04685566.1| hypothetical protein SghaA1_10340 [Streptomyces ghanaensis ATCC 14672] gi|291436938|ref|ZP_06576328.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291339833|gb|EFE66789.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 173 Score = 72.0 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 66/153 (43%), Gaps = 7/153 (4%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 + +++P++ F +I++ + V D L ++S+A+S LD Sbjct: 7 ERLRELLEPLVSSQGFDLEEIAVDSVGRRRVLRVVVDSDTGADLDRIADVSRALSAKLDE 66 Query: 83 ENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + + +G Y LEV +PG +R + ++R G +V ++ L+ +I+ + Sbjct: 67 TDAMGQGEYTLEVGTPGAERLLTEHRHYVRATGRLVRFQLAEGGE----LVARILEVGDD 122 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 G LE + ++FD + AR+ V Sbjct: 123 GLDLEVPGVKGRKATAR--RLAFDDITRARVQV 153 >gi|307720624|ref|YP_003891764.1| hypothetical protein Saut_0703 [Sulfurimonas autotrophica DSM 16294] gi|306978717|gb|ADN08752.1| protein of unknown function DUF150 [Sulfurimonas autotrophica DSM 16294] Length = 150 Score = 71.6 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 19/150 (12%) Query: 29 IQPVIEEMSFRSVQISLLEEKNLLL-QIFV------ERDDGNMTLRDCEELSQAISPILD 81 I+ V++ + ++ E + + ++ V E ++L +C EL+ ISP+LD Sbjct: 7 IESVVKSVGLVLYDTVIVNENDETIFRVSVISNDVEEGKQKGVSLDECVELTHLISPLLD 66 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 V I G YRLEV SPGI+R + F + G V+ + +K+KL GK++ Sbjct: 67 VTPPISGEYRLEVGSPGIERKLTTLDHFKKSVGENVSLLL----DEKEKLKGKLVKVEGN 122 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 F+EKE + + F+++ A+ Sbjct: 123 KLFVEKEGQIH--------EVDFNAVKKAK 144 >gi|291519297|emb|CBK74518.1| Uncharacterized protein conserved in bacteria [Butyrivibrio fibrisolvens 16/4] Length = 100 Score = 71.6 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 49/94 (52%), Gaps = 4/94 (4%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELS 73 + +I P+++E+ F + ++ + L+ ++++ +G +T+ DC ++S Sbjct: 1 MSKHTDYEKRTEELITPILDELGFELYDVEYVKEGADYYLRAYIDK-EGGITIDDCVDVS 59 Query: 74 QAISPILDVENII--EGHYRLEVSSPGIDRPMVR 105 ++ +LD E I + Y EVSSPG+ R + + Sbjct: 60 HRMNELLDAEPQIGGDEGYIFEVSSPGLGRILKK 93 >gi|304390823|ref|ZP_07372775.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304325706|gb|EFL92952.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 159 Score = 71.6 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 59/154 (38%), Gaps = 16/154 (10%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDD--GNMTLRDCEELSQAISPI 79 I V+ PV+E +I++ K+ ++ I ++ D N+ E+ S+AI Sbjct: 2 EAIIQVVNPVVEAAGLYLEKIAVTGPKHQRVVAINLDLPDGVDNLGSAQLEDASRAIGAA 61 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + + G Y LE+S+ G + + R G V Q G + + Sbjct: 62 LDAADPLSGAYTLEISTLGAEHELTNLRLARRALGKDVEVRT-----GGQVRAGILTEVT 116 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 ETG + + F+ + S R + Sbjct: 117 ETGLSVNDDGDVTVY--------PFEDIESVRTV 142 >gi|256820093|ref|YP_003141372.1| hypothetical protein Coch_1263 [Capnocytophaga ochracea DSM 7271] gi|256581676|gb|ACU92811.1| protein of unknown function DUF150 [Capnocytophaga ochracea DSM 7271] Length = 155 Score = 71.6 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 62/161 (38%), Gaps = 15/161 (9%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 M + ++ + E L + +++ ++ D + + DC ELS+AI Sbjct: 1 MNFKDQVKELVNKALSEH-PELFLTDLSVGTDNTIRVTIDG-DKGVGIDDCIELSRAIEN 58 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LD E + LEV+S G P V + + + G V + + G + G Sbjct: 59 SLDRE---AMDFALEVTSFGATEPFVMERQYAKNAGRTVQITTLDG----KTHEGLLKGI 111 Query: 139 SETGFFLEKEKRGEKDMNELQIA------ISFDSLLSARLI 173 +E +E E R K + + +I + + ++I Sbjct: 112 AEGNVIIETETREPKPVGKGKITVKKEHLFALTDIKETKII 152 >gi|118617679|ref|YP_906011.1| hypothetical protein MUL_2119 [Mycobacterium ulcerans Agy99] gi|166987594|sp|A0PQC1|RIMP_MYCUA RecName: Full=Ribosome maturation factor rimP gi|118569789|gb|ABL04540.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] Length = 177 Score = 71.2 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 51/147 (34%), Gaps = 8/147 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ + + + V D + L LS++ S +LD Sbjct: 10 QVIELLGGEFARAGYEIEDVVIDHRARPPRITVVADGDTTLDLDTIAVLSRSASSLLDSL 69 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I Y LEVSSPGIDRP+ + F R G V + S L G+I Sbjct: 70 DNIGDSYVLEVSSPGIDRPLTSEKHFRRARGPKVELTLADGSQ----LTGRIGALQSGSL 125 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSA 170 L E + E I + A Sbjct: 126 DLVVRAGREWKVRE----IPLAEVEKA 148 >gi|118473512|ref|YP_886961.1| hypothetical protein MSMEG_2624 [Mycobacterium smegmatis str. MC2 155] gi|259585793|sp|A0QVM3|RIMP_MYCS2 RecName: Full=Ribosome maturation factor rimP gi|118174799|gb|ABK75695.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length = 181 Score = 71.2 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 54/150 (36%), Gaps = 10/150 (6%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD-DGNMTLRDCEELSQAISPIL 80 + ++ + + ++ +I + D D + L LS+ S +L Sbjct: 15 QKQVIELLDGEFARAGYEIDDV-VVNAATRPARITIVADGDKGLDLDAVAMLSRLASGLL 73 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D + + Y LEV+SPG+DRP+ + F R G + S L ++ GT Sbjct: 74 DTVDTGDTPYVLEVTSPGVDRPLTTEKHFRRARGRKAELSLADGS----SLTARLGGTDG 129 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 + + + + I + A Sbjct: 130 DQVNVVVAQGKDFAVR----QIPLREITKA 155 >gi|224025209|ref|ZP_03643575.1| hypothetical protein BACCOPRO_01943 [Bacteroides coprophilus DSM 18228] gi|224018445|gb|EEF76443.1| hypothetical protein BACCOPRO_01943 [Bacteroides coprophilus DSM 18228] Length = 155 Score = 71.2 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 63/156 (40%), Gaps = 16/156 (10%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 +I+ V+ +E+ + V + + + ++++ ++ D + + DC LS+ + L Sbjct: 4 KQEITDVVNKWLEDKEYFLVDVQISADSRIVVE--IDHRD-GVWIDDCVNLSRYLEETLG 60 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 G Y LEV S G+ +P + G V +KL G + SE Sbjct: 61 ERL---GDYELEVGSAGLGQPFKVLRQYEAHVGSSVEVCTKDG----RKLHGVLQSASEE 113 Query: 142 GFFLEKEKRGEKDMN------ELQIAISFDSLLSAR 171 GF L E R + E ++ ++D + + Sbjct: 114 GFTLLTEVRERPEGAKRPRWVEHELHFTYDEIKYTK 149 >gi|315656400|ref|ZP_07909289.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492959|gb|EFU82561.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 159 Score = 71.2 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 59/154 (38%), Gaps = 16/154 (10%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDD--GNMTLRDCEELSQAISPI 79 I V+ PV+E +I++ K+ ++ I ++ D N+ E+ S+AI Sbjct: 2 EAIIQVVNPVVEAAGLYLEKIAVTGPKHQRVVAINLDLPDGVDNLGSAQLEDASRAIGAA 61 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD + + G Y LE+S+ G + + R G V Q G + + Sbjct: 62 LDAADPLSGAYTLEISTLGAEHELTNLRLARRALGKDVEVRT-----GGQVRAGILTEVT 116 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 ETG + + F+ + S R + Sbjct: 117 ETGLSVNDDGDVTVY--------PFEDIESVRTV 142 >gi|41409008|ref|NP_961844.1| hypothetical protein MAP2910c [Mycobacterium avium subsp. paratuberculosis K-10] gi|51316952|sp|Q73VV1|RIMP_MYCPA RecName: Full=Ribosome maturation factor rimP gi|41397367|gb|AAS05227.1| hypothetical protein MAP_2910c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 178 Score = 71.2 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 54/147 (36%), Gaps = 8/147 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ + + + + D + L LS++ S +LD Sbjct: 10 QVIELLGGEFARAGYEIEDVVIDAHARPPRITVIADGDDGLDLDAAATLSRSASALLDKL 69 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + IE HY LEVSSPG+DRP+ F R G V + +S + G++ T + Sbjct: 70 DTIEDHYVLEVSSPGVDRPLRTPKHFRRARGRKVDVVLSDNS----TVTGRVGETGDDTI 125 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSA 170 L + I ++ A Sbjct: 126 ALVV----RAGRDWAIREIPLGDVVKA 148 >gi|116073741|ref|ZP_01471003.1| hypothetical protein RS9916_34862 [Synechococcus sp. RS9916] gi|116069046|gb|EAU74798.1| hypothetical protein RS9916_34862 [Synechococcus sp. RS9916] Length = 155 Score = 71.2 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 10/151 (6%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDG-NMTLRDCEELSQAISPILD 81 D++SV + F + L + + +Q+ + R G ++TL DC LS + ++ Sbjct: 8 DLTSVAAATAAQQGFELADLQLHTHLRPMTVQVQIRRPGGVDVTLDDCAGLSGPMGDAIE 67 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 +++ Y LE+SSPGI + DF + G V I G Q L G ++ S+ Sbjct: 68 ASSLLTDAYVLEISSPGIGDLVQSDRDFQTFRGFPVEVTINEGDGPPQTLSGSLLDRSDN 127 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + + R +K I+ S+ RL Sbjct: 128 HLEINMKGRIKK--------IARSSISCVRL 150 >gi|118464499|ref|YP_882873.1| hypothetical protein MAV_3696 [Mycobacterium avium 104] gi|166990891|sp|A0QIY5|RIMP_MYCA1 RecName: Full=Ribosome maturation factor rimP gi|118165786|gb|ABK66683.1| conserved hypothetical protein [Mycobacterium avium 104] Length = 178 Score = 71.2 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 54/147 (36%), Gaps = 8/147 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ + + + + D + L LS++ S +LD Sbjct: 10 QVIELLGGEFARAGYEIEDVVIDAHARPPRITVIADGDDGLDLDAAATLSRSASALLDKL 69 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + IE HY LEVSSPG+DRP+ F R G V + +S + G++ T + Sbjct: 70 DTIEDHYVLEVSSPGVDRPLRTPKHFRRARGRKVDVVLSDNS----TVTGRVGETGDDTV 125 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSA 170 L + I ++ A Sbjct: 126 ALVV----RAGRDWAIREIPLGDVVKA 148 >gi|88807315|ref|ZP_01122827.1| hypothetical protein WH7805_12228 [Synechococcus sp. WH 7805] gi|88788529|gb|EAR19684.1| hypothetical protein WH7805_12228 [Synechococcus sp. WH 7805] Length = 155 Score = 70.8 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 55/130 (42%), Gaps = 2/130 (1%) Query: 37 SFRSVQISLLEE-KNLLLQIFVERDD-GNMTLRDCEELSQAISPILDVENIIEGHYRLEV 94 F I +L + + +Q+ + R D +++L DC S+ + L+ + ++ Y LE+ Sbjct: 21 GFELAGIQILTHLQPMTVQVQIRRSDGSDVSLDDCAGFSRPMGEALESQALLTEAYVLEI 80 Query: 95 SSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKD 154 SSPGI + DF + + V + G + + G ++ + R ++ Sbjct: 81 SSPGIGDQLQSDRDFQTFRSYPVEVLYRDNEGRELRQQGSLLERDNDHVHVNVRGRIKRI 140 Query: 155 MNELQIAISF 164 I++ Sbjct: 141 SRPSVISVQL 150 >gi|218264758|ref|ZP_03478470.1| hypothetical protein PRABACTJOHN_04179 [Parabacteroides johnsonii DSM 18315] gi|218221807|gb|EEC94457.1| hypothetical protein PRABACTJOHN_04179 [Parabacteroides johnsonii DSM 18315] Length = 157 Score = 70.8 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 65/153 (42%), Gaps = 16/153 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 IS +++ + V + + L+ I ++ D+ + + DC ELS+ + LD + Sbjct: 9 ISRLVEEKLASSGNYLVDVVIKPGN--LIIIEIDNDE-GVCIDDCAELSRYVEGHLDRD- 64 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 + LEV S GI P +++ G+ V + + KL G + E G Sbjct: 65 --VEDFELEVGSAGITSPFKVLRQYVKNIGNEVEMLLKSGT----KLTGVLKSADENGVV 118 Query: 145 LEKEKRGEKDMNELQIAI------SFDSLLSAR 171 + EK+ + + + ++ + +FD + + Sbjct: 119 VTVEKQVKPEGAKRKVTVQEDQSYTFDEIKYTK 151 >gi|300858701|ref|YP_003783684.1| hypothetical protein cpfrc_01284 [Corynebacterium pseudotuberculosis FRC41] gi|300686155|gb|ADK29077.1| hypothetical protein cpfrc_01284 [Corynebacterium pseudotuberculosis FRC41] gi|302206411|gb|ADL10753.1| Ribosome maturation factor rimP [Corynebacterium pseudotuberculosis C231] gi|302330967|gb|ADL21161.1| Ribosome maturation factor rimP [Corynebacterium pseudotuberculosis 1002] gi|308276654|gb|ADO26553.1| Ribosome maturation factor rimP [Corynebacterium pseudotuberculosis I19] Length = 184 Score = 70.8 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 58/175 (33%), Gaps = 18/175 (10%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 ++ +I P+ + I + L D L E +S AIS + D Sbjct: 7 EVLTELITPIAAAHNMDLEHIRVNRAGKKTLVAISLDSDNRPDLDQLEVVSTAISELFDA 66 Query: 83 ENI-----IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 + Y LEV +PGID P+ + +V E K+ + Sbjct: 67 QEASGALSFGPGYTLEVGTPGIDVPLTTARQWRGNRHRLVVLE----VEGKKSVERIGAV 122 Query: 138 TSETGFFLEKEKRGEK---------DMNELQIAISFDSLLSARLIVTDELLRASL 183 + + + +++G K + + + I F A L T A+L Sbjct: 123 SDDETRVIVVKRQGRKISVRSIELGENTQAVVEIEFAKPAEAELEFTQLDFDAAL 177 >gi|257457667|ref|ZP_05622834.1| conserved hypothetical protein [Treponema vincentii ATCC 35580] gi|257445053|gb|EEV20129.1| conserved hypothetical protein [Treponema vincentii ATCC 35580] Length = 186 Score = 70.8 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 59/143 (41%), Gaps = 12/143 (8%) Query: 30 QPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGH 89 + ++ + ++ V + ++ +K+ L V + + DC ++ +A+ +V + Sbjct: 53 EQLVTGLGYKLVDLQIVHQKSAWLVKAVIYSKNGVGIDDCSKVHRALLSRAEV-LLNSQD 111 Query: 90 YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEK 149 ++EVSSPG++R + ++F + G + L G+++ TG L Sbjct: 112 IQMEVSSPGLNRVIKNAAEFQAFIGENIKVL---EVSCPDWLEGELLAADSTGIRLNISG 168 Query: 150 RGEKDMNELQIAISFDSLLSARL 172 I + + A+L Sbjct: 169 EQRD--------IRYADIKKAKL 183 >gi|295132450|ref|YP_003583126.1| hypothetical protein ZPR_0573 [Zunongwangia profunda SM-A87] gi|294980465|gb|ADF50930.1| conserved hypothetical protein [Zunongwangia profunda SM-A87] Length = 154 Score = 70.8 bits (172), Expect = 9e-11, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 76/164 (46%), Gaps = 18/164 (10%) Query: 19 MGLAGDISSVIQPVIEEMS-FRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M L ++ ++Q EE + + + + + +++ ++ D +++ DC +S+ + Sbjct: 1 MKLKENVEKLLQQAFEENNSLFLIDLMITSDNQ--IRVIIDG-DKGVSVEDCMYVSRKVE 57 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD E + LEV+S G+ P+ + + G + + +K G ++ Sbjct: 58 HNLDREE---EDFSLEVTSAGVSEPLQIPRQYKKNIGRKLQVKTEN-----EKFEGNLID 109 Query: 138 TSETGFFLEKEKRGEKDMNELQIA------ISFDSLLSARLIVT 175 +E+ L+ + R K + + ++ +++ +++ A++++T Sbjct: 110 ATESDIKLQWKAREPKPVGKGKVTVEKEAVLAYSAIVEAKVMIT 153 >gi|108799046|ref|YP_639243.1| hypothetical protein Mmcs_2079 [Mycobacterium sp. MCS] gi|119868161|ref|YP_938113.1| hypothetical protein Mkms_2125 [Mycobacterium sp. KMS] gi|126434649|ref|YP_001070340.1| hypothetical protein Mjls_2062 [Mycobacterium sp. JLS] gi|123070305|sp|Q1BA97|RIMP_MYCSS RecName: Full=Ribosome maturation factor rimP gi|259585794|sp|A3PY72|RIMP_MYCSJ RecName: Full=Ribosome maturation factor rimP gi|259585795|sp|A1UER5|RIMP_MYCSK RecName: Full=Ribosome maturation factor rimP gi|108769465|gb|ABG08187.1| protein of unknown function DUF150 [Mycobacterium sp. MCS] gi|119694250|gb|ABL91323.1| protein of unknown function DUF150 [Mycobacterium sp. KMS] gi|126234449|gb|ABN97849.1| protein of unknown function DUF150 [Mycobacterium sp. JLS] Length = 192 Score = 70.8 bits (172), Expect = 9e-11, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 58/168 (34%), Gaps = 14/168 (8%) Query: 12 EPRIFGDMGL--AGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDC 69 EP++ GL + ++ + + + V D + L Sbjct: 4 EPKL-RPTGLPSQEQVKELLDGEFARAGYEIENVVIDGGARPPRITVVVDGDRPLDLDTV 62 Query: 70 EELSQAISPILDVENIIEG-------HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV 122 LS++ S LD + Y LEV+SPG+DRP+ + + R G V + Sbjct: 63 ASLSRSASEQLDRVDESGPGVTADAATYVLEVTSPGVDRPLTTEKHYRRARGRKVELTLS 122 Query: 123 LSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 S L G+I + G + R N + + ++ A Sbjct: 123 DGSQ----LTGRIGALTADGESVSLVVREGARANFSVRELPLEGIVKA 166 >gi|332292193|ref|YP_004430802.1| protein of unknown function DUF150 [Krokinobacter diaphorus 4H-3-7-5] gi|332170279|gb|AEE19534.1| protein of unknown function DUF150 [Krokinobacter diaphorus 4H-3-7-5] Length = 154 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 68/160 (42%), Gaps = 17/160 (10%) Query: 21 LAGDISSVIQPVIEEM-SFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L +++++Q ++E S + + + ++I ++ D +T+ DC +S+ + Sbjct: 2 LKEKVTNLLQEALDENPSLFLISLDIQGNNE--VKIIIDG-DSGVTVEDCMAVSRKVEHN 58 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD E + LEV S G P+ + + G + + +K+ G + + Sbjct: 59 LDREE---EDFSLEVMSAGATSPLEIPRQYKKNIGRHLEVKTQDG----EKIEGLMTEAT 111 Query: 140 ETGFFLEKEKRGEKDMNELQI------AISFDSLLSARLI 173 + L + R K + + ++ ++ ++ A+++ Sbjct: 112 DAEITLTWKTREPKPVGKGKVTVEKIETFPYNEIVQAKVM 151 >gi|78184172|ref|YP_376607.1| hypothetical protein Syncc9902_0595 [Synechococcus sp. CC9902] gi|78168466|gb|ABB25563.1| conserved hypothetical protein [Synechococcus sp. CC9902] Length = 166 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 53/148 (35%), Gaps = 10/148 (6%) Query: 27 SVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDD-GNMTLRDCEELSQAISPILDVEN 84 + Q V F I LL + LQ+ + ++ L DC S + L+ Sbjct: 22 QLTQRVAGLQGFELCGIQLLTHMNPITLQVQIRHTSGSDVNLDDCAGFSGVLGEALEESQ 81 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 + Y LE+SSPGI + DF + G V + +L G + + Sbjct: 82 QLVEAYVLEISSPGIGEQLSCDRDFQTFRGFPVDVTHRDQGNVEHRLEGLLHERNTDSLQ 141 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARL 172 + R + +I D ++ RL Sbjct: 142 INIRGRIK--------SIPRDQVIEVRL 161 >gi|116071182|ref|ZP_01468451.1| hypothetical protein BL107_16090 [Synechococcus sp. BL107] gi|116066587|gb|EAU72344.1| hypothetical protein BL107_16090 [Synechococcus sp. BL107] Length = 166 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 53/148 (35%), Gaps = 10/148 (6%) Query: 27 SVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDD-GNMTLRDCEELSQAISPILDVEN 84 + Q V F I LL + LQ+ + + ++ L DC S + L+ Sbjct: 22 QLTQRVAGLQGFELCGIQLLTHLNPITLQVQIRHTNGSDVNLDDCAGFSGVLGEALEESQ 81 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 + Y LE+SSPGI + DF + G V + L G + + Sbjct: 82 QLIEAYVLEISSPGIGEQLSCDRDFQTFRGFPVDVTHRDQGNVEHHLEGLLHERNTDSLQ 141 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSARL 172 + R + +I D ++ RL Sbjct: 142 INIRGRIK--------SIPRDQVIEVRL 161 >gi|304383856|ref|ZP_07366313.1| conserved hypothetical protein [Prevotella marshii DSM 16973] gi|304334934|gb|EFM01207.1| conserved hypothetical protein [Prevotella marshii DSM 16973] Length = 155 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 58/142 (40%), Gaps = 10/142 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + + ++ +++ + V I + + ++++ ++ D + + DC LS+ I L + Sbjct: 7 VKAFVEEWLQDKEYFLVDIEISSDNRIVVE--IDHAD-GVWIEDCAALSRFIEEHLSRDE 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S G+ +P ++ + G V K G + + F Sbjct: 64 ---EDYELEVGSAGLGQPFKVAQQYINFIGKEVEVLDTEGM----KYTGILKHVTGNDFV 116 Query: 145 LEKEKRGEKDMNELQIAISFDS 166 + ++ +++ + I + D Sbjct: 117 ITVREKQKQEGKKRPIWVDVDK 138 >gi|303235788|ref|ZP_07322395.1| conserved hypothetical protein [Prevotella disiens FB035-09AN] gi|302484235|gb|EFL47223.1| conserved hypothetical protein [Prevotella disiens FB035-09AN] Length = 155 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 57/141 (40%), Gaps = 10/141 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + +++ +E+ + V I L + + I ++ D + + DC ELS+ I L + Sbjct: 7 VKKLVEEWLEDKEYFLVDIQLSPDSR--IVIEIDHAD-GVWIEDCVELSKFIEEHLSRDE 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S G+ +P ++ + G V +K+ G + F Sbjct: 64 ---EDYELEVGSAGLGQPFKVPQQYINFIGKEVEVLDKEG----RKVKGILKSVEGDDFV 116 Query: 145 LEKEKRGEKDMNELQIAISFD 165 + ++ + + + + + D Sbjct: 117 VSVNEKVQVEGKKRPVKMDVD 137 >gi|120403302|ref|YP_953131.1| hypothetical protein Mvan_2311 [Mycobacterium vanbaalenii PYR-1] gi|259585796|sp|A1T7H5|RIMP_MYCVP RecName: Full=Ribosome maturation factor rimP gi|119956120|gb|ABM13125.1| protein of unknown function DUF150 [Mycobacterium vanbaalenii PYR-1] Length = 176 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 55/149 (36%), Gaps = 9/149 (6%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + ++ + + + V D + L ELS+ S +LD Sbjct: 11 QRQVVELLDGEFTRAGYDLEDVVIDAASRPPRITVVTDSDHGLDLDSVAELSRIASELLD 70 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + Y LEV+SPG+DRP+ + + R G + + S L G+I G ++ Sbjct: 71 GLDSAP--YVLEVTSPGVDRPLTTEKHYRRARGRLAEITLTDGS----VLTGRIGGVADG 124 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSA 170 + E N I+ +++ A Sbjct: 125 TVGVVV---REGRSNLSVREIALNAIAKA 150 >gi|320334651|ref|YP_004171362.1| ribosome maturation factor rimP [Deinococcus maricopensis DSM 21211] gi|319755940|gb|ADV67697.1| Ribosome maturation factor rimP [Deinococcus maricopensis DSM 21211] Length = 147 Score = 70.0 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 7/127 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVER-DDGNMTLRDCEELSQAISPILDV 82 + + + + + +++ L + L + ++R D+ +T+ D E S+ + LD Sbjct: 4 LEQLATEALSPLGYEVLEVHLQNPGRRPTLLVRIDRLDEQPVTVDDLETASKLLGLELDR 63 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 + I+G YRLE+ SPG RP+ R F R G G+ I+ Sbjct: 64 TDPIKGEYRLELESPGSKRPLRRTRHFERMVGLKARVR-----GEGHSFTAPILKVEGDL 118 Query: 143 FFLEKEK 149 + Sbjct: 119 VTFDAPG 125 >gi|254482605|ref|ZP_05095844.1| conserved hypothetical protein [marine gamma proteobacterium HTCC2148] gi|214037296|gb|EEB77964.1| conserved hypothetical protein [marine gamma proteobacterium HTCC2148] Length = 90 Score = 70.0 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 8/94 (8%) Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LDVE+ I G Y LEVSSPG+DR + + + + + G ++ + + ++K G + G Sbjct: 1 MLDVEDPITGEYTLEVSSPGMDRLLFQLTQYPAYVGEIIELRLRSAFEGRRKFKGVLKGI 60 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ + + + ++ AR+ Sbjct: 61 EGEDVVIQVDN--------HEYLLPHSAIEKARV 86 >gi|295395323|ref|ZP_06805526.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC 49030] gi|294971826|gb|EFG47698.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC 49030] Length = 153 Score = 70.0 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 61/158 (38%), Gaps = 17/158 (10%) Query: 22 AGDISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERD---DGNMTLRDCEELSQAIS 77 A ++ +I+ + + + + + + ++ D ++L + ++ +S Sbjct: 5 AQQVTDLIRTPLSQAGLIVEDVKAHAAGQYRKVTVVIDLDTDTSDPVSLDTIAQATKIVS 64 Query: 78 PILDVENIIEG-HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 ++D + Y LEV+SPG R + K FLR G + G+++ Sbjct: 65 ELIDDVELFNDKPYDLEVTSPGATRELTAKRHFLRNRGRNLDVRTNGP-----TYTGELV 119 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ G L K+ I F + A++++ Sbjct: 120 DVTDKGITLMDTKKV-------DYVIPFSDITKAKVVL 150 >gi|297623579|ref|YP_003705013.1| hypothetical protein Trad_1348 [Truepera radiovictrix DSM 17093] gi|297164759|gb|ADI14470.1| protein of unknown function DUF150 [Truepera radiovictrix DSM 17093] Length = 146 Score = 70.0 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 65/157 (41%), Gaps = 20/157 (12%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNM-TLRDCEELSQAI 76 M L +++P + + +++ + + + ++R D + T+ D E +Q Sbjct: 1 MDLQRAAEQLLEP----LGYEVLELVVSGRGGKRNVLLRIDRRDRGVVTMEDVERATQVF 56 Query: 77 SPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 S LD + EG YRLEV SPG +RP+ F R++G + + G+++ Sbjct: 57 SLELDRLDPFEGAYRLEVESPGPERPLRTAEHFRRFSGLLAKVRAH-----GETFTGRVV 111 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 S+ + + ++ + + ARL Sbjct: 112 EVSDAQVTFDVHGQPR--------TLALEDI-QARLA 139 >gi|111023600|ref|YP_706572.1| hypothetical protein RHA1_ro06641 [Rhodococcus jostii RHA1] gi|123339654|sp|Q0S222|RIMP_RHOSR RecName: Full=Ribosome maturation factor rimP gi|110823130|gb|ABG98414.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length = 190 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 59/151 (39%), Gaps = 12/151 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++ +I +++ + +++ ++ ++I V+ D + L LS IS + Sbjct: 6 KERVTELISDLVQRQGYDLEDVAVTLAGRHSAVRIMVDS-DAGLELDAVANLSHEISEVF 64 Query: 81 D-VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 D V + E Y LEV+SPGI RP+ + + R G ++ + ++G+I Sbjct: 65 DSVSDFGESPYTLEVTSPGIGRPLTHERHWRRARGRRARIDLAH-----ETVVGRIGLLD 119 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 + ++ + A Sbjct: 120 GDSVAVVI----GSRTGPEVRRVALPDIQKA 146 >gi|283458509|ref|YP_003363137.1| hypothetical protein RMDY18_14850 [Rothia mucilaginosa DY-18] gi|283134552|dbj|BAI65317.1| uncharacterized protein conserved in archaea [Rothia mucilaginosa DY-18] Length = 223 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 69/160 (43%), Gaps = 13/160 (8%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVER---DDGNMTLRDCEELSQAIS 77 +++ I PVI E S + + N ++I V+ +++L E+S AIS Sbjct: 56 EEEVAEAIAPVISEFSLVLEGLKISGPAANRTVKITVDYTAERTDSLSLDSLAEISGAIS 115 Query: 78 PILDVENIIEGH--YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + + Y LEVSSPG R + + + R ++A + + ++ Sbjct: 116 SALDRADENDEFFPYELEVSSPGATRALTERRHWERARTRLIAVTAPDGTE----YLARL 171 Query: 136 MGTSETGFFL---EKEKRGEKDMNELQIAISFDSLLSARL 172 + G L + K+G+K+ + ++++ SA + Sbjct: 172 HEVQDDGPVLARKKNTKKGQKESYHEPSLLPWENIASAHV 211 >gi|325269684|ref|ZP_08136297.1| hypothetical protein HMPREF9141_1507 [Prevotella multiformis DSM 16608] gi|324988052|gb|EGC20022.1| hypothetical protein HMPREF9141_1507 [Prevotella multiformis DSM 16608] Length = 183 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 59/151 (39%), Gaps = 13/151 (8%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + D + + S++ +E + V I + + ++++ ++ D + + DC ELS+ Sbjct: 28 LMIDKNV---VKSLVDEWLEGKEYFLVDIQISPDDKIVVE--IDHAD-GVWIEDCVELSR 81 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 I L + Y LEV S G+ +P + + G V +K+ G Sbjct: 82 YIEDRLSRDE---EDYELEVGSAGLGQPFKVPQQYQNFIGKEVEVLDKDG----KKVKGV 134 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFD 165 + F + ++ + + + + D Sbjct: 135 LKSVDGNDFVVAVNEKVHVEGKKRPVKMDVD 165 >gi|259586223|sp|A2C4N8|RIMP_PROM1 RecName: Full=Ribosome maturation factor rimP Length = 156 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 58/152 (38%), Gaps = 11/152 (7%) Query: 24 DISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVE--RDDGNMTLRDCEELSQAISPIL 80 ++ + F L +Q+ + D +T+ DC LSQ I + Sbjct: 8 ELKDLTAKSATNYGFDVTDFKMFTHLNPLSIQVNIRHKNPDKKVTIDDCSILSQYIDEAI 67 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 +I++ + LE+SS GI + + DF + G V +Q+ G ++ ++ Sbjct: 68 QGSSILDQPFNLEISSEGISDFLTEEKDFQTFKGFPVEVSYQDLKKIEQQTNGLLLKRTD 127 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + ++ + + I + ++ RL Sbjct: 128 NELQINQKGKTQ--------RIPVEDVIQVRL 151 >gi|315225518|ref|ZP_07867328.1| conserved hypothetical protein [Capnocytophaga ochracea F0287] gi|314944462|gb|EFS96501.1| conserved hypothetical protein [Capnocytophaga ochracea F0287] Length = 155 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 61/161 (37%), Gaps = 15/161 (9%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 M + ++ + E L + +++ ++ D + + DC EL++AI Sbjct: 1 MNFKDQVKELVNKALSEH-PELFLTDLSVGADNTIRVTIDG-DKGVGIDDCIELNRAIEN 58 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LD E + LEV+S G P V + + + G V + + G + G Sbjct: 59 SLDRE---AMDFALEVTSFGATEPFVMERQYAKNAGRTVQVTTLDG----KTHEGVLKGI 111 Query: 139 SETGFFLEKEKRGEKDMNELQIA------ISFDSLLSARLI 173 E LE E R K + + +I + + ++I Sbjct: 112 VEGKAILETETREPKPVGKGKITVKKEHLFALTDIKETKVI 152 >gi|225012170|ref|ZP_03702607.1| protein of unknown function DUF150 [Flavobacteria bacterium MS024-2A] gi|225003725|gb|EEG41698.1| protein of unknown function DUF150 [Flavobacteria bacterium MS024-2A] Length = 154 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 76/163 (46%), Gaps = 17/163 (10%) Query: 19 MGLAGDISSVIQPVIE-EMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M + S+++ +E + S + + + + + I ++ D +TL+DC +S+AI Sbjct: 1 MNFRSKVESLLEAALEEDQSLFLIDLKI--GSDNSIHITLDG-DQGVTLKDCVNVSRAIE 57 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD E + LEV+S G+ P++ +++ G + E + S L G + Sbjct: 58 HNLDREE---YDFSLEVASAGVGSPLLNSRQYIKNIGRKLRVESMEVS----TLEGTLTA 110 Query: 138 TSETGFFLEKEKRGEKDMNELQI------AISFDSLLSARLIV 174 F LE ++R K + + ++ +S+D + A+++V Sbjct: 111 ADNQAFTLEWKQREAKPVGKGKVTVTKQKTLSYDQISIAKVLV 153 >gi|320537772|ref|ZP_08037694.1| hypothetical protein HMPREF9554_02448 [Treponema phagedenis F0421] gi|320145362|gb|EFW37056.1| hypothetical protein HMPREF9554_02448 [Treponema phagedenis F0421] Length = 149 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 33/144 (22%), Positives = 64/144 (44%), Gaps = 14/144 (9%) Query: 30 QPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEG 88 + ++ + +R V +S +++K +Q V + + + DC ++ +A+ P L + Sbjct: 16 ESLVNGLGYRLVNLSAVKQKAGWQIQAVVYS-EKGVGIDDCSKVHRALLPRL-EALLNSQ 73 Query: 89 HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKE 148 L+VSSPGI+R + +F + G +A S + G + T+E +E Sbjct: 74 DVSLQVSSPGINRNIKSTIEFAAFIGEAIAVWSAEISDWR---EGTLADTTEEAITIE-- 128 Query: 149 KRGEKDMNELQIAISFDSLLSARL 172 E AIS+ + A+L Sbjct: 129 ------TKEGMAAISYADIKKAKL 146 >gi|254821856|ref|ZP_05226857.1| hypothetical protein MintA_18122 [Mycobacterium intracellulare ATCC 13950] Length = 170 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 53/147 (36%), Gaps = 8/147 (5%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++ + + + + D + L LS++ S +LD Sbjct: 10 QVIELLDAEFARAGYEIEDVVIDARTRPPRITVIADGDDGLDLDTAATLSRSASALLDDL 69 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I HY LEVSS G+DRP+ F R G V + S L G+I T+E Sbjct: 70 DTIGDHYVLEVSSRGVDRPLTSAKHFRRARGRKVDLTLSDGS----TLTGRIGETNEDAV 125 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSA 170 L + IS ++ A Sbjct: 126 ALVV----RTGRDWAIREISLGDVVKA 148 >gi|312880099|ref|ZP_07739899.1| protein of unknown function DUF150 [Aminomonas paucivorans DSM 12260] gi|310783390|gb|EFQ23788.1| protein of unknown function DUF150 [Aminomonas paucivorans DSM 12260] Length = 151 Score = 69.3 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 69/158 (43%), Gaps = 13/158 (8%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 L + + + ++ + ++ + + + E L+L++ ++ +G ++L+DCE ++ Sbjct: 1 MTSPLRPPLEAEFRKLVGGLGYQCLALEKVREGGRLVLRLTLD-VEGGISLQDCETAARE 59 Query: 76 ISPILDVEN-IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 ++ LD + + LEVSSPG +RP+VR D+ R+ G + K++++ Sbjct: 60 VNAFLDEHDEAFSEPFFLEVSSPGPERPLVRLEDYRRFRGEWIRISWK---NGKKRVLCI 116 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + L + + + + RL Sbjct: 117 DDVGEDGVVTLR-------SREGEVLQLPWTEIRRPRL 147 >gi|72382860|ref|YP_292215.1| hypothetical protein PMN2A_1022 [Prochlorococcus marinus str. NATL2A] gi|72002710|gb|AAZ58512.1| conserved hypothetical protein [Prochlorococcus marinus str. NATL2A] Length = 183 Score = 69.3 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 59/153 (38%), Gaps = 11/153 (7%) Query: 24 DISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVE--RDDGNMTLRDCEELSQAISPIL 80 ++ + F L +Q+ + D +T+ DC LSQ I + Sbjct: 35 ELKVLTAKSATNYGFDVTDFKMFTHLNPLSIQVNIRHKNPDKKVTIDDCSILSQYIDEAI 94 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 +I++ + LE+SS GI + + DF + G V +Q++ G ++ ++ Sbjct: 95 QGSSILDQPFNLEISSEGIGDFLTEEKDFQTFKGFPVEVSYQDLKKIEQQINGLLLKRTD 154 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + ++ + + I + ++ RL Sbjct: 155 NELHINQKGKTQ--------RIPVEDVIQVRLA 179 >gi|255326387|ref|ZP_05367471.1| conserved hypothetical protein [Rothia mucilaginosa ATCC 25296] gi|255296604|gb|EET75937.1| conserved hypothetical protein [Rothia mucilaginosa ATCC 25296] Length = 223 Score = 69.3 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 69/160 (43%), Gaps = 13/160 (8%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVER---DDGNMTLRDCEELSQAIS 77 +++ I PVI E S + + N ++I V+ +++L E+S AIS Sbjct: 56 EEEVAEAIAPVISEFSLVLEGLKISGPAANRTVKITVDYTAERTDSLSLDSLAEISGAIS 115 Query: 78 PILDVENIIEGH--YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + + Y LEVSSPG R + + + R ++A + + ++ Sbjct: 116 SALDRADENDEFFPYELEVSSPGATRALTERRHWERARTRLIAVTAPDGTE----YLARL 171 Query: 136 MGTSETGFFL---EKEKRGEKDMNELQIAISFDSLLSARL 172 + G L + K+G+K+ + ++++ SA + Sbjct: 172 HEVQDEGPVLARKKNTKKGQKESYHEPSLLPWENIASAHV 211 >gi|317125352|ref|YP_004099464.1| hypothetical protein Intca_2228 [Intrasporangium calvum DSM 43043] gi|315589440|gb|ADU48737.1| protein of unknown function DUF150 [Intrasporangium calvum DSM 43043] Length = 197 Score = 69.3 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 40/188 (21%), Positives = 76/188 (40%), Gaps = 23/188 (12%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVER------------DDGNMT 65 M I + I+P + + +++ K ++++ V+ ++ Sbjct: 1 MSTVEQIRATIEPALVSLGLVIDDLAVNQAGKRRMVRVLVDSDIAGLDPSDATSPVPPLS 60 Query: 66 LRDCEELSQAISPILDVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS 124 L D + ++A+S LD +++ Y LEVSSPG+ RP+ + DF R G +V Sbjct: 61 LDDIADATRAVSTRLDDSDVMGSMPYVLEVSSPGVGRPLRSRHDFRRQVGRLVDVAHEGG 120 Query: 125 SGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRASLN 184 + G+++ L+ K Q+ ++ DS+ A + V E RA + Sbjct: 121 -----SVTGRLIEVHPDRLVLQV--PATKKAAGHQLTLALDSVHQATVQV--EFKRAEVE 171 Query: 185 NYGSYAGL 192 A L Sbjct: 172 AAHPQAAL 179 >gi|254458920|ref|ZP_05072343.1| conserved hypothetical protein [Campylobacterales bacterium GD 1] gi|207084191|gb|EDZ61480.1| conserved hypothetical protein [Campylobacterales bacterium GD 1] Length = 149 Score = 69.3 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 23/160 (14%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLL-QI------FVERDDGNMTLRDCEE 71 M L DI+S+++ V +++ E + + +I V+ ++L C Sbjct: 1 MSLESDINSLVKSV----DLELYDATVVSENDETIYRISVISKEIVDGKRSGISLDACVN 56 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 L+ ISP+LDV + G YRLEV SPGI+R + FL G ++ + +K+K Sbjct: 57 LTHLISPLLDVTPPVSGDYRLEVGSPGIERKLSSLKHFLLSIGENISLLLT----NKEKY 112 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 GK++ ++ FL + ++ I F +L A+ Sbjct: 113 KGKLVKVKDSKIFLNV--------GDEKVEIDFYEILKAK 144 >gi|150003920|ref|YP_001298664.1| hypothetical protein BVU_1353 [Bacteroides vulgatus ATCC 8482] gi|212692746|ref|ZP_03300874.1| hypothetical protein BACDOR_02244 [Bacteroides dorei DSM 17855] gi|237709442|ref|ZP_04539923.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|237724958|ref|ZP_04555439.1| conserved hypothetical protein [Bacteroides sp. D4] gi|254880839|ref|ZP_05253549.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|265754641|ref|ZP_06089693.1| UPF0090 protein [Bacteroides sp. 3_1_33FAA] gi|294775076|ref|ZP_06740605.1| conserved hypothetical protein [Bacteroides vulgatus PC510] gi|319639849|ref|ZP_07994578.1| ribosome maturation factor rimP [Bacteroides sp. 3_1_40A] gi|166977921|sp|A6L028|RIMP_BACV8 RecName: Full=Ribosome maturation factor rimP gi|149932344|gb|ABR39042.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482] gi|212664682|gb|EEB25254.1| hypothetical protein BACDOR_02244 [Bacteroides dorei DSM 17855] gi|229436696|gb|EEO46773.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] gi|229456498|gb|EEO62219.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|254833632|gb|EET13941.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|263234755|gb|EEZ20323.1| UPF0090 protein [Bacteroides sp. 3_1_33FAA] gi|294451120|gb|EFG19591.1| conserved hypothetical protein [Bacteroides vulgatus PC510] gi|317388513|gb|EFV69363.1| ribosome maturation factor rimP [Bacteroides sp. 3_1_40A] Length = 155 Score = 68.9 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 65/153 (42%), Gaps = 16/153 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 ++ ++ +E + V +++ + ++++ ++ + + + DC ELS+ I LD E Sbjct: 7 VTRIVDEWLEGKDYFLVDVTVSPDDKIVVE--IDHAE-GVWIDDCVELSRYIESKLDREE 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S GI +P +L G V +KL G + +E F Sbjct: 64 ---EDYELEVGSAGIGQPFKVLQQYLIHIGKEVEILTKEG----KKLEGVLKDANEENFT 116 Query: 145 LEKEKRGEKDMN------ELQIAISFDSLLSAR 171 + EK+ + + E I ++D + + Sbjct: 117 VTIEKKVKPEGAKRPKLVEEDITFAYDEIKYTK 149 >gi|289643648|ref|ZP_06475761.1| protein of unknown function DUF150 [Frankia symbiont of Datisca glomerata] gi|289506539|gb|EFD27525.1| protein of unknown function DUF150 [Frankia symbiont of Datisca glomerata] Length = 221 Score = 68.9 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 66/163 (40%), Gaps = 14/163 (8%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 ++ ++ P + F +++ + + V DG + L E S+ Sbjct: 27 VRPSSARAELVRLLTPQLAARGFDLEDVTVSRAGSRSVVRVVVDRDGGVDLDAVAEASRV 86 Query: 76 ISPILDV--------ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD 127 S +LD + + G Y LEVSSPG+DRP+V + R G +V+ Sbjct: 87 ASAVLDAAETDPAAGDPPLAGPYVLEVSSPGVDRPLVAPRHWHRARGRLVSVRTRDG--- 143 Query: 128 KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 ++L+G++ T E L E + + ISF ++ A Sbjct: 144 -RELLGRVRATDEQTAELVLEGG--RTAVGEVLRISFADVVRA 183 >gi|110639789|ref|YP_679999.1| hypothetical protein CHU_3420 [Cytophaga hutchinsonii ATCC 33406] gi|122966504|sp|Q11PK7|RIMP_CYTH3 RecName: Full=Ribosome maturation factor rimP gi|110282470|gb|ABG60656.1| conserved hypothetical protein [Cytophaga hutchinsonii ATCC 33406] Length = 167 Score = 68.9 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 70/167 (41%), Gaps = 17/167 (10%) Query: 18 DMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 ++ + +S ++Q E V I+ + + + D + + +C E S+A+ Sbjct: 5 ELEIKTYVSDLLQERAE---LFLVDIAFSGTHSRRKILVILDKDSGILIDECGEFSRALG 61 Query: 78 PILDVENIIEGH-YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 +++ N+ + Y LEVSSPG+DRP++ + R G+ ++ + + + Sbjct: 62 NLIEENNLFGDNAYVLEVSSPGMDRPLLVSRQYKRRIGNTLSFLLNDGTQ----FDAVLE 117 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAIS---------FDSLLSARLIV 174 SE G + + K N+ + + F+ + LIV Sbjct: 118 SVSEEGVVVMPAPQKVKKSNKKEAVVDVAIEPRKLRFEEIKKCNLIV 164 >gi|302338536|ref|YP_003803742.1| protein of unknown function DUF150 [Spirochaeta smaragdinae DSM 11293] gi|301635721|gb|ADK81148.1| protein of unknown function DUF150 [Spirochaeta smaragdinae DSM 11293] Length = 175 Score = 68.9 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 33/146 (22%), Positives = 75/146 (51%), Gaps = 12/146 (8%) Query: 29 IQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 ++P+IE + +++V+++ + + + + D + L DCE++ +AI P L++ + + Sbjct: 34 LEPIIEGLGYKTVEVAAKKTGSRHHVSVIISGRDSGIGLTDCEKVHKAILPRLEI-LLDD 92 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 +EVSSPGI R + ++F + G +V + + ++G+IM + E +E Sbjct: 93 RDIYVEVSSPGISRNLKCGAEFGIFVGSLVRLLLEGENE---WIVGRIMESDERKVVIEM 149 Query: 148 EKRGEKDMNELQIAISFDSLLSARLI 173 ++D +D++ A+L+ Sbjct: 150 SDGKKEDYL-------YDTIRKAKLV 168 >gi|213962899|ref|ZP_03391159.1| conserved hypothetical protein [Capnocytophaga sputigena Capno] gi|213954556|gb|EEB65878.1| conserved hypothetical protein [Capnocytophaga sputigena Capno] Length = 155 Score = 68.5 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 61/161 (37%), Gaps = 15/161 (9%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 M + ++ + L + ++I ++ D + + DC ELS+A+ Sbjct: 1 MNFKDQVKELVDKALSNH-PELFLTDLTVGTDNTIRITIDG-DKGVCIDDCIELSRAVEG 58 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 LD E + + LEV+S G P V + + + G V + + G + G Sbjct: 59 ALDRETV---DFALEVTSFGATEPFVMERQYTKNAGRTVQITTLDG----KTHEGVLKGL 111 Query: 139 SETGFFLEKEKRGEKDMNELQIA------ISFDSLLSARLI 173 E LE E R K + + +I + + ++I Sbjct: 112 QEGKAVLETETREPKPVGKGKITVKKEQLFALTDIKETKVI 152 >gi|15609979|ref|NP_217358.1| hypothetical protein Rv2842c [Mycobacterium tuberculosis H37Rv] gi|15842383|ref|NP_337420.1| hypothetical protein MT2908 [Mycobacterium tuberculosis CDC1551] gi|31794019|ref|NP_856512.1| hypothetical protein Mb2867c [Mycobacterium bovis AF2122/97] gi|121638722|ref|YP_978946.1| hypothetical protein BCG_2862c [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662683|ref|YP_001284206.1| hypothetical protein MRA_2865 [Mycobacterium tuberculosis H37Ra] gi|148824032|ref|YP_001288786.1| hypothetical protein TBFG_12857 [Mycobacterium tuberculosis F11] gi|167967195|ref|ZP_02549472.1| hypothetical protein MtubH3_03787 [Mycobacterium tuberculosis H37Ra] gi|215404814|ref|ZP_03416995.1| hypothetical protein Mtub0_14218 [Mycobacterium tuberculosis 02_1987] gi|215412674|ref|ZP_03421392.1| hypothetical protein Mtub9_14980 [Mycobacterium tuberculosis 94_M4241A] gi|215428281|ref|ZP_03426200.1| hypothetical protein MtubT9_18553 [Mycobacterium tuberculosis T92] gi|215431784|ref|ZP_03429703.1| hypothetical protein MtubE_14186 [Mycobacterium tuberculosis EAS054] gi|215447096|ref|ZP_03433848.1| hypothetical protein MtubT_14592 [Mycobacterium tuberculosis T85] gi|218754590|ref|ZP_03533386.1| hypothetical protein MtubG1_14629 [Mycobacterium tuberculosis GM 1503] gi|219558859|ref|ZP_03537935.1| hypothetical protein MtubT1_16742 [Mycobacterium tuberculosis T17] gi|224991214|ref|YP_002645903.1| hypothetical protein JTY_2857 [Mycobacterium bovis BCG str. Tokyo 172] gi|253798072|ref|YP_003031073.1| hypothetical protein TBMG_01130 [Mycobacterium tuberculosis KZN 1435] gi|254232937|ref|ZP_04926264.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|254365488|ref|ZP_04981533.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|254551906|ref|ZP_05142353.1| hypothetical protein Mtube_15842 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187858|ref|ZP_05765332.1| hypothetical protein MtubCP_17794 [Mycobacterium tuberculosis CPHL_A] gi|260201973|ref|ZP_05769464.1| hypothetical protein MtubT4_18245 [Mycobacterium tuberculosis T46] gi|260206153|ref|ZP_05773644.1| hypothetical protein MtubK8_17835 [Mycobacterium tuberculosis K85] gi|289444393|ref|ZP_06434137.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] gi|289448504|ref|ZP_06438248.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289553370|ref|ZP_06442580.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289571030|ref|ZP_06451257.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289575543|ref|ZP_06455770.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] gi|289746640|ref|ZP_06506018.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289751503|ref|ZP_06510881.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289754950|ref|ZP_06514328.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|289758962|ref|ZP_06518340.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|289763018|ref|ZP_06522396.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|294994067|ref|ZP_06799758.1| hypothetical protein Mtub2_06033 [Mycobacterium tuberculosis 210] gi|297635455|ref|ZP_06953235.1| hypothetical protein MtubK4_15097 [Mycobacterium tuberculosis KZN 4207] gi|297732454|ref|ZP_06961572.1| hypothetical protein MtubKR_15262 [Mycobacterium tuberculosis KZN R506] gi|298526310|ref|ZP_07013719.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|306777126|ref|ZP_07415463.1| hypothetical protein TMAG_01041 [Mycobacterium tuberculosis SUMu001] gi|306781032|ref|ZP_07419369.1| hypothetical protein TMBG_02983 [Mycobacterium tuberculosis SUMu002] gi|306785670|ref|ZP_07423992.1| hypothetical protein TMCG_02090 [Mycobacterium tuberculosis SUMu003] gi|306789710|ref|ZP_07428032.1| hypothetical protein TMDG_00030 [Mycobacterium tuberculosis SUMu004] gi|306794343|ref|ZP_07432645.1| hypothetical protein TMEG_03985 [Mycobacterium tuberculosis SUMu005] gi|306798767|ref|ZP_07437069.1| hypothetical protein TMFG_00036 [Mycobacterium tuberculosis SUMu006] gi|306804613|ref|ZP_07441281.1| hypothetical protein TMHG_02045 [Mycobacterium tuberculosis SUMu008] gi|306807353|ref|ZP_07444021.1| hypothetical protein TMGG_02026 [Mycobacterium tuberculosis SUMu007] gi|306973242|ref|ZP_07485903.1| hypothetical protein TMJG_01830 [Mycobacterium tuberculosis SUMu010] gi|307080951|ref|ZP_07490121.1| hypothetical protein TMKG_03274 [Mycobacterium tuberculosis SUMu011] gi|307085546|ref|ZP_07494659.1| hypothetical protein TMLG_01328 [Mycobacterium tuberculosis SUMu012] gi|313659786|ref|ZP_07816666.1| ribosome maturation protein RimP [Mycobacterium tuberculosis KZN V2475] gi|54040615|sp|P67215|RIMP_MYCBO RecName: Full=Ribosome maturation factor rimP gi|54042962|sp|P67214|RIMP_MYCTU RecName: Full=Ribosome maturation factor rimP gi|166988534|sp|A1KMI5|RIMP_MYCBP RecName: Full=Ribosome maturation factor rimP gi|166988535|sp|A5U6J4|RIMP_MYCTA RecName: Full=Ribosome maturation factor rimP gi|254801565|sp|C1AFV6|RIMP_MYCBT RecName: Full=Ribosome maturation factor rimP gi|2078017|emb|CAB08448.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv] gi|13882682|gb|AAK47234.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551] gi|31619613|emb|CAD95052.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97] gi|121494370|emb|CAL72851.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124601996|gb|EAY61006.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|134151001|gb|EBA43046.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|148506835|gb|ABQ74644.1| hypothetical protein MRA_2865 [Mycobacterium tuberculosis H37Ra] gi|148722559|gb|ABR07184.1| conserved hypothetical protein [Mycobacterium tuberculosis F11] gi|224774329|dbj|BAH27135.1| hypothetical protein JTY_2857 [Mycobacterium bovis BCG str. Tokyo 172] gi|253319575|gb|ACT24178.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 1435] gi|289417312|gb|EFD14552.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] gi|289421462|gb|EFD18663.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289438002|gb|EFD20495.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289539974|gb|EFD44552.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] gi|289544784|gb|EFD48432.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289687168|gb|EFD54656.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289692090|gb|EFD59519.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289695537|gb|EFD62966.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|289710524|gb|EFD74540.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|289714526|gb|EFD78538.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|298496104|gb|EFI31398.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308214495|gb|EFO73894.1| hypothetical protein TMAG_01041 [Mycobacterium tuberculosis SUMu001] gi|308326140|gb|EFP14991.1| hypothetical protein TMBG_02983 [Mycobacterium tuberculosis SUMu002] gi|308329670|gb|EFP18521.1| hypothetical protein TMCG_02090 [Mycobacterium tuberculosis SUMu003] gi|308333809|gb|EFP22660.1| hypothetical protein TMDG_00030 [Mycobacterium tuberculosis SUMu004] gi|308337335|gb|EFP26186.1| hypothetical protein TMEG_03985 [Mycobacterium tuberculosis SUMu005] gi|308340978|gb|EFP29829.1| hypothetical protein TMFG_00036 [Mycobacterium tuberculosis SUMu006] gi|308346276|gb|EFP35127.1| hypothetical protein TMGG_02026 [Mycobacterium tuberculosis SUMu007] gi|308348793|gb|EFP37644.1| hypothetical protein TMHG_02045 [Mycobacterium tuberculosis SUMu008] gi|308357360|gb|EFP46211.1| hypothetical protein TMJG_01830 [Mycobacterium tuberculosis SUMu010] gi|308361313|gb|EFP50164.1| hypothetical protein TMKG_03274 [Mycobacterium tuberculosis SUMu011] gi|308364914|gb|EFP53765.1| hypothetical protein TMLG_01328 [Mycobacterium tuberculosis SUMu012] gi|323718541|gb|EGB27711.1| hypothetical protein TMMG_03713 [Mycobacterium tuberculosis CDC1551A] gi|326904455|gb|EGE51388.1| hypothetical protein TBPG_02361 [Mycobacterium tuberculosis W-148] gi|328457845|gb|AEB03268.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 4207] Length = 183 Score = 68.5 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 52/152 (34%), Gaps = 11/152 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + ++ + + + + D + L LS+ S +LD Sbjct: 8 QRQVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSRRASALLD 67 Query: 82 VEN---IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 + I G Y LEVSSPG++RP+ + F R G V + S +L G++ Sbjct: 68 GLDGANKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGS----RLTGRVGEM 123 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 L +D I ++ A Sbjct: 124 RAGTVALVI----REDRGWAVREIPLAEIVKA 151 >gi|325282975|ref|YP_004255516.1| Ribosome maturation factor rimP [Deinococcus proteolyticus MRP] gi|324314784|gb|ADY25899.1| Ribosome maturation factor rimP [Deinococcus proteolyticus MRP] Length = 150 Score = 68.5 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 15/138 (10%) Query: 38 FRSVQISLLEE-KNLLLQIFVER-DDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVS 95 + +++ + +L + ++R D+ +++ D E ++ +S LD + I G YRLEV Sbjct: 19 YELLEVQMQNASGRPVLLVRIDRADEQPVSVDDIERATRRLSLWLDEADPIGGEYRLEVE 78 Query: 96 SPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDM 155 SPG RP++R F R G G + I S + +G Sbjct: 79 SPGAKRPLLRTRHFERMLGLKAKVR-----GGEHAFTAPIKAVSGETVTFDVPGQG---- 129 Query: 156 NELQIAISFDSLLSARLI 173 + + + A L Sbjct: 130 ---DVTLRIADI-KANLA 143 >gi|307565720|ref|ZP_07628189.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A] gi|307345546|gb|EFN90914.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A] Length = 155 Score = 68.5 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 56/141 (39%), Gaps = 10/141 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + ++ +E + V I + E ++++ ++ D + + DC ELS+ I L + Sbjct: 7 VKKLVSEWLEGKEYFLVDIQISSENKIVVE--IDHAD-GVWIEDCVELSKYIEEHLSRDE 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S G+ +P ++ + G V +K+ G + F Sbjct: 64 A---DYELEVGSAGLGQPFKVAQQYINFIGKEVEVLDKEG----KKVKGLLKSVDGDEFI 116 Query: 145 LEKEKRGEKDMNELQIAISFD 165 + ++ + + + + D Sbjct: 117 VAVNEKVRIEGKKRPVKMDVD 137 >gi|123969227|ref|YP_001010085.1| hypothetical protein A9601_16951 [Prochlorococcus marinus str. AS9601] gi|166980197|sp|A2BT67|RIMP_PROMS RecName: Full=Ribosome maturation factor rimP gi|123199337|gb|ABM70978.1| DUF150 [Prochlorococcus marinus str. AS9601] Length = 155 Score = 68.5 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 25/145 (17%), Positives = 65/145 (44%), Gaps = 2/145 (1%) Query: 22 AGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDD-GNMTLRDCEELSQAISPI 79 + ++++ V E +++ + ++++I + + + +++L DC + S Sbjct: 6 KSKLEALLEKVANERDLEICGLNIQTNQNPVVIEITIRKTNGDDISLDDCALFNTPASDE 65 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 ++ N++ Y LE+SS G+ + + DF + G V E+ + + L G + S Sbjct: 66 IEKSNLLNCSYVLEISSQGVSDELTSERDFKTFKGFPVNVELNQKNSKIKILNGLLYEKS 125 Query: 140 ETGFFLEKEKRGEKDMNELQIAISF 164 + + + + +K + + IS Sbjct: 126 KDYLAINIKGKIKKIPFDEVLKISL 150 >gi|327313034|ref|YP_004328471.1| hypothetical protein HMPREF9137_0747 [Prevotella denticola F0289] gi|326946205|gb|AEA22090.1| conserved hypothetical protein [Prevotella denticola F0289] Length = 155 Score = 68.5 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 56/141 (39%), Gaps = 10/141 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + S++ +E + V I + + ++++ ++ D + + DC ELS+ I L + Sbjct: 7 VKSLVDEWLEGKEYFLVDIQISPDDKIVVE--IDHAD-GVWIEDCVELSRYIEDRLSRDE 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S G+ +P + + G V +K+ G + F Sbjct: 64 ---EDYELEVGSAGLGQPFKVPQQYQNFIGKEVEVLDKDG----KKVKGVLKSVDGNDFV 116 Query: 145 LEKEKRGEKDMNELQIAISFD 165 + ++ + + + + D Sbjct: 117 VAVNEKVHVEGKKRPVKMDVD 137 >gi|325856505|ref|ZP_08172194.1| hypothetical protein HMPREF9303_1606 [Prevotella denticola CRIS 18C-A] gi|325483474|gb|EGC86447.1| hypothetical protein HMPREF9303_1606 [Prevotella denticola CRIS 18C-A] Length = 155 Score = 68.5 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 56/141 (39%), Gaps = 10/141 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + S++ +E + V I + + ++++ ++ D + + DC ELS+ I L + Sbjct: 7 VKSLVDEWLEGKEYFLVDIQISPDDKIVVE--IDHAD-GVWIEDCVELSRYIEDRLSRDE 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S G+ +P + + G V +K+ G + F Sbjct: 64 ---EDYELEVGSAGLGQPFKVPQQYQNFIGKEVEVLDKDG----KKVKGVLKSVDGNDFV 116 Query: 145 LEKEKRGEKDMNELQIAISFD 165 + ++ + + + + D Sbjct: 117 VAVNEKVHVEGKKRPVKMDVD 137 >gi|306968906|ref|ZP_07481567.1| hypothetical protein TMIG_02342 [Mycobacterium tuberculosis SUMu009] gi|308353519|gb|EFP42370.1| hypothetical protein TMIG_02342 [Mycobacterium tuberculosis SUMu009] Length = 183 Score = 68.5 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 52/152 (34%), Gaps = 11/152 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + ++ + + + + D + L LS+ S +LD Sbjct: 8 QRQVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSRRASALLD 67 Query: 82 VEN---IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 + I G Y LEVSSPG++RP+ + F R G V + S +L G++ Sbjct: 68 GLDGANKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGS----RLTGRVGEM 123 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 L +D I ++ A Sbjct: 124 RAGTVALVI----REDRGWAVREIPLAEIVKA 151 >gi|163786552|ref|ZP_02181000.1| hypothetical protein FBALC1_15242 [Flavobacteriales bacterium ALC-1] gi|159878412|gb|EDP72468.1| hypothetical protein FBALC1_15242 [Flavobacteriales bacterium ALC-1] Length = 154 Score = 68.1 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 68/155 (43%), Gaps = 17/155 (10%) Query: 25 ISSVIQPVI-EEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++Q + E + +L + ++I ++ D + + DC +S+AI +D + Sbjct: 6 VEDLLQNALDERQDLFLIDFTLSGDNA--IKIVIDG-DNGVLVEDCMYISRAIEHNIDRD 62 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + LEV S G P+ + + G + + D Q L GK++ +E G Sbjct: 63 E---HDFSLEVLSSGATTPLTLPRQYKKHIGRDLEVKT----NDSQSLEGKLIDVNEQGV 115 Query: 144 FLEKEKRGEKDMNELQIA------ISFDSLLSARL 172 L + R K + + ++ ++F+++ A++ Sbjct: 116 VLTWKAREPKPVGKGKVTVTKEANVTFENIKEAKV 150 >gi|282859023|ref|ZP_06268159.1| conserved hypothetical protein [Prevotella bivia JCVIHMP010] gi|282588191|gb|EFB93360.1| conserved hypothetical protein [Prevotella bivia JCVIHMP010] Length = 155 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 57/141 (40%), Gaps = 10/141 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + ++ +E+ + V I + + ++++ ++ D + + DC ELS+ I L + Sbjct: 7 VKKLVDEWLEDKDYFLVDIQISSDDKIVVE--IDHAD-GVWIEDCVELSKYIEEHLSRDE 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S G+ +P + + G V +K+ G + F Sbjct: 64 A---DYELEVGSAGLGQPFKVPQQYENFVGKEVEVLDKDG----KKIKGILKSVDGDNFI 116 Query: 145 LEKEKRGEKDMNELQIAISFD 165 + ++ + + + I + D Sbjct: 117 VAVNEKVQVEGKKRPIKMDVD 137 >gi|120434525|ref|YP_860221.1| hypothetical protein GFO_0156 [Gramella forsetii KT0803] gi|166979794|sp|A0LXP9|RIMP_GRAFK RecName: Full=Ribosome maturation factor rimP gi|117576675|emb|CAL65144.1| protein containing DUF150 [Gramella forsetii KT0803] Length = 153 Score = 67.7 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 67/162 (41%), Gaps = 18/162 (11%) Query: 21 LAGDISSVIQPVIEEMS-FRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + + + V EE + + + + + ++I ++ D+ +++ DC +S+ I Sbjct: 2 LKEKVEKLAEKVFEENNSLFLISLDINSANH--IKIVLDGDE-GVSVNDCIMVSRGIEHN 58 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD E + LEV+S G+ P+ + + G + + K ++ Sbjct: 59 LDREE---EDFSLEVTSAGVSEPLSMPRQYKKNIGRRLQVKTEND-----KFEADLLSAD 110 Query: 140 ETGFFLEKEKRGEKDMNE------LQIAISFDSLLSARLIVT 175 + L + R K + + ++ + + ++ A++ +T Sbjct: 111 QNEIKLSWKAREPKPVGKGKVTVQKEVVLPYTDIVEAKVKIT 152 >gi|281422607|ref|ZP_06253606.1| conserved hypothetical protein [Prevotella copri DSM 18205] gi|281403277|gb|EFB33957.1| conserved hypothetical protein [Prevotella copri DSM 18205] Length = 155 Score = 67.7 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 58/136 (42%), Gaps = 10/136 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + +++ +++ + V I + + ++++ ++ D + + DC LS+ I L+ + Sbjct: 7 VKKLVEEWLQDKEYFLVSIEISPDDRIVVE--IDHAD-GVWIEDCVALSKYIEDHLNRDE 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S G+ +P ++ + G V +K+ G + F Sbjct: 64 ---EDYELEVGSAGLGQPFKVPQQYINFIGKEVEVLDADG----KKVKGILKAVEGNDFT 116 Query: 145 LEKEKRGEKDMNELQI 160 + E++ + + + + Sbjct: 117 VGVEEKVKVEGKKRPV 132 >gi|15806797|ref|NP_295519.1| hypothetical protein DR_1796 [Deinococcus radiodurans R1] gi|34223164|sp|Q9RTG8|RIMP_DEIRA RecName: Full=Ribosome maturation factor rimP gi|6459574|gb|AAF11352.1|AE002021_1 conserved hypothetical protein [Deinococcus radiodurans R1] Length = 158 Score = 67.7 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 49/129 (37%), Gaps = 3/129 (2%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVER-DDGNMTLRDCEELSQAISPILDV 82 + + + + F ++++ E L++ + ++R D+ +T+ D S+A D Sbjct: 11 LFDLADGAVRPLGFEVLEVTQQREGRDLIVLVRIDRLDEQPVTMDDLTAASRAAEAEFDR 70 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 + IE YRLE SPG RP++R F R G L + I Sbjct: 71 VDPIEEEYRLEFESPGGKRPLLRARHFERMIGLKAKVR-SLPGRGEHNFTAPIKAVEGDT 129 Query: 143 FFLEKEKRG 151 E Sbjct: 130 VTFEHGGED 138 >gi|300774924|ref|ZP_07084787.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910] gi|300506739|gb|EFK37874.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910] Length = 155 Score = 67.7 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 65/163 (39%), Gaps = 18/163 (11%) Query: 19 MGLAGDISSVIQPVIE-EMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M I ++ +E + + + ++ + + D ++L+DC + S+AI Sbjct: 1 MEFRKRIEELLNEFLETRKDLFLIDLKISAGDDITV---ILDGDNGVSLQDCLDASRAIE 57 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +D E + L+V S G+ P+ F + G + + SS K+ G++ Sbjct: 58 FNMDREE---HDFSLQVMSAGLSEPLSTPRQFSKNIGREIEVMLEDSS----KIEGELSK 110 Query: 138 TSETGFFLEKEKRGEKDMNELQI------AISFDSLLSARLIV 174 + L R KD+ + ++ I + + A L+V Sbjct: 111 VDDEKITLVLRYRKPKDIGKGKVDVEEEKEIPYSEIKKA-LVV 152 >gi|254494921|ref|ZP_01052530.2| conserved hypothetical protein [Polaribacter sp. MED152] gi|213690503|gb|EAQ41958.2| conserved hypothetical protein [Polaribacter sp. MED152] Length = 176 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 66/157 (42%), Gaps = 18/157 (11%) Query: 23 GDISSVIQPVIE-EMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 I ++ + S + +++ E +Q+ V+ D + L +C +S+ + LD Sbjct: 27 KKIKDLVDEALALNESLFLIDLTISENNK--IQVTVDG-DNGVPLSECIRISRNVEHNLD 83 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 E + LEV++P I P+ K +++ ++ + ++L G ++ + Sbjct: 84 REE---EDFSLEVTTPDISHPLKEKRQYVKNINRILKVKTAE-----EELEGTLVEADDE 135 Query: 142 GFFLEKEKRGEKDMNELQI------AISFDSLLSARL 172 L + R K + + ++ +++ + A++ Sbjct: 136 KIVLNWKAREPKPIGKGKVTVKKSATLTYTEIKEAKV 172 >gi|332298599|ref|YP_004440521.1| Ribosome maturation factor rimP [Treponema brennaborense DSM 12168] gi|332181702|gb|AEE17390.1| Ribosome maturation factor rimP [Treponema brennaborense DSM 12168] Length = 169 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 65/155 (41%), Gaps = 18/155 (11%) Query: 31 PVIEEMSFRSVQISLLEEKNLLLQIFV-------ERDDGNMTLRDCEELSQAISPILDVE 83 P++ + + V++ ++ + ++++ E + + DC ++ +A+ P L+V Sbjct: 17 PLVAGLGYVLVELRVIPQHG-VIRVLAVISHPAGENSIALIGINDCAKVHRALLPRLEVV 75 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + +EV+SPG++R + ++F + GH+V + + GKI+ + Sbjct: 76 -LNSQDIYMEVTSPGMERVIKNAAEFALFTGHLVRVWDSEVTD---WIAGKIVVSDTESV 131 Query: 144 FLE------KEKRGEKDMNELQIAISFDSLLSARL 172 LE + I + + A+L Sbjct: 132 TLEMIRTELVKGAEPSIGAPESKRIPYGRIAKAKL 166 >gi|218296561|ref|ZP_03497289.1| protein of unknown function DUF150 [Thermus aquaticus Y51MC23] gi|218243103|gb|EED09635.1| protein of unknown function DUF150 [Thermus aquaticus Y51MC23] Length = 141 Score = 67.7 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 8/124 (6%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 D+ +++ +E + +++ + +L +D+ +T+ D E S+ I +LD E Sbjct: 2 DLWQLVEEAVEPLDLEVLEVKEAPGE--VLVRLERKDEKPITVADLERASRHIEAVLDRE 59 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I G YRL V SPG RP+ + F R+ G + +G+I+ Sbjct: 60 DPIPGSYRLLVESPGPKRPLFTRRHFERFQGLKAKV------PGPEGFVGRILRVEGDEV 113 Query: 144 FLEK 147 + Sbjct: 114 VFQV 117 >gi|119632744|gb|ABL84379.1| unknown [Streptococcus suis] Length = 99 Score = 67.3 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 4/91 (4%) Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + Y LEV+SPG++RP+ + G + ++ + + G ++ T Sbjct: 11 DPFPDQYMLEVTSPGLERPLKTADAVEKAVGKYIHVKLYQAIDKIKVFEGTLLSFDGTDL 70 Query: 144 FLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + K ++ I + ++ ARL V Sbjct: 71 IMEYMDKTRKK----EVTIPYQTVAKARLAV 97 >gi|320449996|ref|YP_004202092.1| 15 kDa protein [Thermus scotoductus SA-01] gi|320150165|gb|ADW21543.1| 15 kDa protein [Thermus scotoductus SA-01] Length = 141 Score = 67.3 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 55/130 (42%), Gaps = 8/130 (6%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 D+ +++ +E + +++ + +L +D+ + + D E S+AI + D E Sbjct: 2 DLWRLVEEAVEPLDLEVLEVKEAPGE--VLVRLERKDERPIRVADLERASRAIEAVFDQE 59 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + I G YRL V SPG RP+ + F R+ G + G+I+ Sbjct: 60 DPIPGSYRLLVESPGPKRPLFTRRHFERFQGLKAKV------PGPEGFTGRILRVEGDEV 113 Query: 144 FLEKEKRGEK 153 + + ++ Sbjct: 114 VFQVGQEEKR 123 >gi|288801647|ref|ZP_06407089.1| conserved hypothetical protein [Prevotella melaninogenica D18] gi|302344942|ref|YP_003813295.1| hypothetical protein HMPREF0659_A5169 [Prevotella melaninogenica ATCC 25845] gi|288335689|gb|EFC74122.1| conserved hypothetical protein [Prevotella melaninogenica D18] gi|302149852|gb|ADK96114.1| conserved hypothetical protein [Prevotella melaninogenica ATCC 25845] Length = 155 Score = 67.3 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 57/141 (40%), Gaps = 10/141 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + S++ +E + V I + + ++++ ++ D + + DC ELS+ I L + Sbjct: 7 VKSLVDEWLEGKEYFLVDIQISSDDKIVVE--IDHAD-GVWIEDCVELSKYIEDRLSRDE 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S G+ +P + + G V +K+ G + F Sbjct: 64 ---EDYELEVGSAGLGQPFKVPQQYQNFIGKEVEVLGKDG----KKVKGILKSVDGNDFV 116 Query: 145 LEKEKRGEKDMNELQIAISFD 165 + ++ + + + + + D Sbjct: 117 VAVNEKVQVEGKKRPVKMDVD 137 >gi|309811524|ref|ZP_07705306.1| conserved hypothetical protein [Dermacoccus sp. Ellin185] gi|308434575|gb|EFP58425.1| conserved hypothetical protein [Dermacoccus sp. Ellin185] Length = 183 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 75/168 (44%), Gaps = 19/168 (11%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERD----------DGNMTLRDCE 70 I I P +E + ++++ K L+++ V+RD +TL + Sbjct: 5 EQTIIDTILPKLEPLGLLVEDVTVVPAGKRRLVRVLVDRDVALETAVEESIEPVTLDEVT 64 Query: 71 ELSQAISPILDVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ 129 + ++ I L+ +++ E Y LEVSSPG DRP+ F R G +V + D+ Sbjct: 65 DATRVIDAELEASDVMGEQPYVLEVSSPGTDRPLTLPRHFARNVGRLVTVTL----DDES 120 Query: 130 KLIGKIMGTSETGFFLEKEKRGEK---DMNELQIAISFDSLLSARLIV 174 K+ G+I + E+ G+K ++ +++ S+ A++ V Sbjct: 121 KVAGRITRADAQTVEVTPEQGGKKAGAAVDAEPARLNYTSITGAKVQV 168 >gi|255010120|ref|ZP_05282246.1| hypothetical protein Bfra3_13350 [Bacteroides fragilis 3_1_12] gi|313147918|ref|ZP_07810111.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313136685|gb|EFR54045.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 155 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 64/158 (40%), Gaps = 17/158 (10%) Query: 21 LAGD-ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + + +++ +E + V++++ + ++++ ++ + + + DC ELS+ I Sbjct: 2 IEKRTVCQIVEEWLEGKDYFLVEVTVSPDDKIVVE--IDHAE-GVWIEDCVELSRFIESK 58 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 L+ E Y LEV S GI +P + G V +KL G + Sbjct: 59 LNREE---EDYELEVGSAGIGQPFKVLQQYYNHIGLEVEVLTK----GGRKLSGVLKDAD 111 Query: 140 ETGFFLEKEKRGEKDMN------ELQIAISFDSLLSAR 171 E F + +K+ + + E ++D + + Sbjct: 112 EEKFVVTVQKKVKPEGAKRPQLVEEDETFTYDDIKYTK 149 >gi|262202084|ref|YP_003273292.1| hypothetical protein Gbro_2150 [Gordonia bronchialis DSM 43247] gi|262085431|gb|ACY21399.1| protein of unknown function DUF150 [Gordonia bronchialis DSM 43247] Length = 179 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 61/149 (40%), Gaps = 11/149 (7%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDV 82 +++ +++ V+ + F + + + V+R DG L ELS I +LD Sbjct: 7 ELNDLVEKVVTDRGFDLEDVVVRRRDGRDEFSVVVDR-DGGSDLDVLAELSTEIGEVLDA 65 Query: 83 ENIIEGH-YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + Y LEV+SPGIDRP+ + R G V E ++G++ S Sbjct: 66 VPALADAAYTLEVTSPGIDRPLTAPRHWRRALGRRVRIE----RDGSDAVVGRVGQVSGD 121 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSA 170 + +G + + FDS+ A Sbjct: 122 DVAIVVNHKGRLAVE----TVGFDSVTRA 146 >gi|281424956|ref|ZP_06255869.1| conserved hypothetical protein [Prevotella oris F0302] gi|281400800|gb|EFB31631.1| conserved hypothetical protein [Prevotella oris F0302] Length = 155 Score = 67.0 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 58/153 (37%), Gaps = 16/153 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + ++ + + + V I + + ++++ ++ D + + DC LS+ I L + Sbjct: 7 VKKLVDEWLADKEYFLVGIDISPDDKIVVE--IDHAD-GVWIEDCVALSKYIEDRLSRDE 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S G+ +P ++ + G V D +K G + F Sbjct: 64 ---EDYELEVGSAGLGQPFKVMQQYVNFIGKEVEV----MDADGKKFQGVLKSVDGNDFT 116 Query: 145 ------LEKEKRGEKDMNELQIAISFDSLLSAR 171 ++ E + ++ A D++ + Sbjct: 117 VTVNEKVKVEGKKRPQKMDVDHAFKMDNVKYTK 149 >gi|91207995|sp|Q46J16|RIMP_PROMT RecName: Full=Ribosome maturation factor rimP Length = 156 Score = 67.0 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 59/153 (38%), Gaps = 11/153 (7%) Query: 24 DISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVE--RDDGNMTLRDCEELSQAISPIL 80 ++ + F L +Q+ + D +T+ DC LSQ I + Sbjct: 8 ELKVLTAKSATNYGFDVTDFKMFTHLNPLSIQVNIRHKNPDKKVTIDDCSILSQYIDEAI 67 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 +I++ + LE+SS GI + + DF + G V +Q++ G ++ ++ Sbjct: 68 QGSSILDQPFNLEISSEGIGDFLTEEKDFQTFKGFPVEVSYQDLKKIEQQINGLLLKRTD 127 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 + ++ + + I + ++ RL Sbjct: 128 NELHINQKGKTQ--------RIPVEDVIQVRLA 152 >gi|283769340|ref|ZP_06342239.1| conserved hypothetical protein [Bulleidia extructa W1219] gi|283103997|gb|EFC05381.1| conserved hypothetical protein [Bulleidia extructa W1219] Length = 150 Score = 67.0 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 3/146 (2%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78 M +I +++ P +++ F +++ + K LQI V G L C + S+ IS Sbjct: 1 MNRIDEIKALVVPALKKQGFEVEEVTWIS-KERTLQISVHNLQGETDLEACAKASECISD 59 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LD +++ Y LEV SPG +R + V E + Q L G ++ T Sbjct: 60 MLDENDLMLEGYTLEVCSPGAEREIQDIHSIQD--ESYVHVEFKEAMNHHQSLEGYLVPT 117 Query: 139 SETGFFLEKEKRGEKDMNELQIAISF 164 E +EK K + + I+F Sbjct: 118 QEGYELHYREKAVLKKVKLNEENIAF 143 >gi|297565904|ref|YP_003684876.1| hypothetical protein Mesil_1476 [Meiothermus silvanus DSM 9946] gi|296850353|gb|ADH63368.1| protein of unknown function DUF150 [Meiothermus silvanus DSM 9946] Length = 143 Score = 67.0 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 7/126 (5%) Query: 27 SVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDG-NMTLRDCEELSQAISPILDVEN 84 V Q ++ M + +++SL + +L + +ER D +++ + E S+ + LD + Sbjct: 2 EVAQDLLGPMGYDVLEVSLKGSGNSRVLTVRLERKDEVPISVEELERASRVLGSELDRLD 61 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 +IE YRLEV SPG DRP++ F R+ G G+I G SE Sbjct: 62 LIESAYRLEVESPGPDRPLLTPRHFERFAGLKAKVRSPEG-----NFTGRIEGVSEDTVT 116 Query: 145 LEKEKR 150 K Sbjct: 117 FLVGKE 122 >gi|53711552|ref|YP_097544.1| hypothetical protein BF0261 [Bacteroides fragilis YCH46] gi|60679811|ref|YP_209955.1| hypothetical protein BF0217 [Bacteroides fragilis NCTC 9343] gi|253564387|ref|ZP_04841844.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|265764944|ref|ZP_06093219.1| UPF0090 protein [Bacteroides sp. 2_1_16] gi|81317116|sp|Q5LIN3|RIMP_BACFN RecName: Full=Ribosome maturation factor rimP gi|81383870|sp|Q64ZR6|RIMP_BACFR RecName: Full=Ribosome maturation factor rimP gi|52214417|dbj|BAD47010.1| conserved hypothetical protein [Bacteroides fragilis YCH46] gi|60491245|emb|CAH05993.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343] gi|251948163|gb|EES88445.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|263254328|gb|EEZ25762.1| UPF0090 protein [Bacteroides sp. 2_1_16] gi|301161334|emb|CBW20874.1| conserved hypothetical protein [Bacteroides fragilis 638R] Length = 155 Score = 67.0 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 64/153 (41%), Gaps = 16/153 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + +++ +E+ + V++++ + ++++ ++ + + + DC ELS+ I L+ E Sbjct: 7 VCQIVEEWLEDKDYFLVEVTVSPDDKIVVE--IDHAE-GVWIEDCVELSRFIESKLNREE 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S GI +P + G V +KL G + E F Sbjct: 64 ---EDYELEVGSAGIGQPFKVLQQYYNHIGLEVEVLTK----GGRKLSGVLKDADEEKFV 116 Query: 145 LEKEKRGEKDMN------ELQIAISFDSLLSAR 171 + +K+ + + E ++D + + Sbjct: 117 VTVQKKVKPEGAKRPQLVEEDETFTYDDIKYTK 149 >gi|260591779|ref|ZP_05857237.1| conserved hypothetical protein [Prevotella veroralis F0319] gi|260536063|gb|EEX18680.1| conserved hypothetical protein [Prevotella veroralis F0319] Length = 155 Score = 67.0 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 57/141 (40%), Gaps = 10/141 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + S++ +E + V I + + ++++ ++ D + + DC ELS+ I L + Sbjct: 7 VKSLVDEWLEGKEYFLVDIQISPDDKIVVE--IDHAD-GVWIEDCVELSKYIEDRLSRDE 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S G+ +P + + G V +K+ G + F Sbjct: 64 ---EDYELEVGSAGLGQPFKVPQQYQNFIGKEVEVLDKDG----KKVKGVLKSVDGNDFI 116 Query: 145 LEKEKRGEKDMNELQIAISFD 165 + ++ + + + + + D Sbjct: 117 VAVNEKVQVEGKKRPVKMDVD 137 >gi|157414093|ref|YP_001484959.1| hypothetical protein P9215_17601 [Prochlorococcus marinus str. MIT 9215] gi|166980224|sp|A8G6Z2|RIMP_PROM2 RecName: Full=Ribosome maturation factor rimP gi|157388668|gb|ABV51373.1| DUF150 [Prochlorococcus marinus str. MIT 9215] Length = 155 Score = 67.0 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 64/143 (44%), Gaps = 2/143 (1%) Query: 24 DISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDD-GNMTLRDCEELSQAISPILD 81 + +++ V E + I++ + +++I +++ + +++L DC + S ++ Sbjct: 8 KLEILLKKVANEWDLKICSINIQTNQNPTVVKIIIKKTNGDDISLEDCALFNAPASEEIE 67 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 N++ Y LE+SS G+ + DF + G V ++ + K+ L G + S Sbjct: 68 NSNLLNCSYVLEISSQGVSDELTSDRDFKTFKGFPVNVQLNQKNSKKKFLNGLLYEKSND 127 Query: 142 GFFLEKEKRGEKDMNELQIAISF 164 + + + +K + + IS Sbjct: 128 YLAINIKGKIKKIPFDEVLKISL 150 >gi|255692952|ref|ZP_05416627.1| conserved hypothetical protein [Bacteroides finegoldii DSM 17565] gi|260621263|gb|EEX44134.1| conserved hypothetical protein [Bacteroides finegoldii DSM 17565] Length = 155 Score = 67.0 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 60/153 (39%), Gaps = 16/153 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + +++ +E + V++++ + ++++ ++ + + + DC ELS+ I L+ E Sbjct: 7 VCQIVEEWLEGKDYFLVEVTVSPDDKIVVE--IDHAE-GVWIEDCVELSRYIESKLNREE 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S GI +P + G V QKL G + E F Sbjct: 64 ---EDYELEVGSAGIGQPFKVLQQYYIHIGQEVEVMTK----GGQKLTGVLKHADEEKFT 116 Query: 145 LEK------EKRGEKDMNELQIAISFDSLLSAR 171 + E + E +++ + + Sbjct: 117 VSVQKKVKMEGAKRPKLVEEDETFTYEQIKYTK 149 >gi|86131974|ref|ZP_01050570.1| conserved hypothetical protein [Dokdonia donghaensis MED134] gi|85817308|gb|EAQ38488.1| conserved hypothetical protein [Dokdonia donghaensis MED134] Length = 154 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 70/160 (43%), Gaps = 17/160 (10%) Query: 21 LAGDISSVIQPVIEEM-SFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L +++++Q ++E + + + + ++I ++ DD + + DC +S+ + Sbjct: 2 LKEKVTNLLQEALDENPNLFLISLDIQGNNE--IKIIIDGDD-GVKVEDCIAVSRKVEHN 58 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD E + LEV S G P+ + + G + + D K+ G + + Sbjct: 59 LDREE---EDFSLEVMSAGATSPLAIPRQYKKNVGR----HLEVKKEDGTKIEGLMTDAT 111 Query: 140 ETGFFLEKEKRGEKDMNELQI------AISFDSLLSARLI 173 +T L + R K + + ++ IS+ ++ A+++ Sbjct: 112 DTDVTLTWKTREPKPVGKGKVTVQKTETISYSEIVQAKVM 151 >gi|315928474|gb|EFV07784.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni 305] Length = 114 Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 7/109 (6%) Query: 29 IQPVIEEMSFRSVQISLLEEKNLLL-QIFVERD------DGNMTLRDCEELSQAISPILD 81 ++ + +E++ L E + +++V + + L DC LS+ +SPI D Sbjct: 3 LEALCKEVNLELYDSELTSENGKKIYRVYVMKPLDEKGERRGVNLDDCARLSEILSPIFD 62 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 VE + G Y LEVSS G++R + + F + +V KQK Sbjct: 63 VEPPVSGEYFLEVSSAGLERKLSKIEHFAKSINELVKITTGEKEKSKQK 111 >gi|300788186|ref|YP_003768477.1| hypothetical protein AMED_6341 [Amycolatopsis mediterranei U32] gi|299797700|gb|ADJ48075.1| conserved hypothetical protein [Amycolatopsis mediterranei U32] Length = 168 Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 54/142 (38%), Gaps = 9/142 (6%) Query: 30 QPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV-ENIIEG 88 + F + + L V D + L + E+S+ +S LD E+++ Sbjct: 2 AEAVTAAGFDLDSFEVQQAGRRQLVKVVVDSDDGVGLDEIAEISRTVSATLDENEHVLAS 61 Query: 89 HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFL--- 145 Y LEV+SPG+DRP+ + + R +V + +G++ E + Sbjct: 62 AYTLEVTSPGLDRPLTQPRHWRRARFRLVKI---SPAEGA-PFVGRVGHAGEDAARVLAG 117 Query: 146 -EKEKRGEKDMNELQIAISFDS 166 + D+ + + I F Sbjct: 118 GKLRDVRYADVEKAVVEIEFKQ 139 >gi|318042327|ref|ZP_07974283.1| hypothetical protein SCB01_11489 [Synechococcus sp. CB0101] Length = 157 Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 62/155 (40%), Gaps = 11/155 (7%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGN-MTLRDCEELSQAISP 78 L D+ + V + F+ + LL + + L + + DG ++L +C S + Sbjct: 5 LIPDLERLASQVAADAGFQVCGVQLLTHRIPMTLLVQLRLADGGDVSLDNCASFSGVLGE 64 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD-KQKLIGKIMG 137 L+ +IE Y LE+SSPGI + DF + G V S + + G ++ Sbjct: 65 ALEAAALIEDAYVLEISSPGIAETLNDDRDFRSFRGFPVCVRYRDSKTGVEAEREGLLLE 124 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ + R + + +++ RL Sbjct: 125 RTDDSVQINVRGR--------TVRLPRADVIAVRL 151 >gi|282881116|ref|ZP_06289803.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] gi|281304920|gb|EFA96993.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] Length = 155 Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 58/135 (42%), Gaps = 10/135 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + +V++ +++ + V I + + ++++ ++ D + + DC ELS+ I L + Sbjct: 7 VKAVVEEWLQDKEYFLVDIEVSPDDKIVVE--IDHVD-GVWIEDCVELSRYIESRLSRDE 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S G+ +P ++ + G V +K+ G + F Sbjct: 64 ---EDYELEVGSAGLGQPFKVPQQYINFIGKEVEVLDRDG----KKVQGTLKSVDGNDFV 116 Query: 145 LEKEKRGEKDMNELQ 159 + +++ + + + Sbjct: 117 VAVDEKVKIEGKKRP 131 >gi|307718806|ref|YP_003874338.1| hypothetical protein STHERM_c11200 [Spirochaeta thermophila DSM 6192] gi|306532531|gb|ADN02065.1| hypothetical protein STHERM_c11200 [Spirochaeta thermophila DSM 6192] Length = 182 Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 63/166 (37%), Gaps = 16/166 (9%) Query: 13 PRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEE 71 PR + P++E+M + V++ L L+I + +++ DC Sbjct: 25 PRAIR-TPEEEKLYQHFVPLLEKMGYALVELHLRYRRGGAALEIVIHGAH--LSVDDCAR 81 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 + + + P + + +EV SPGIDR + + + + G + S ++ Sbjct: 82 VLRLLKPKAQLL-LDLADLHMEVMSPGIDRVLKNRDELALFVGKGLKLLDTRS---QRWE 137 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 G + +E L + +I DS+ A+L T E Sbjct: 138 GGILEAVTEDHVVLR--------KGAERRSIPIDSIGKAKLDFTQE 175 >gi|153809149|ref|ZP_01961817.1| hypothetical protein BACCAC_03459 [Bacteroides caccae ATCC 43185] gi|149128125|gb|EDM19345.1| hypothetical protein BACCAC_03459 [Bacteroides caccae ATCC 43185] Length = 155 Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 64/153 (41%), Gaps = 16/153 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + +++ +E + V++++ + ++++ ++ + + + DC ELS+ I L+ E Sbjct: 7 VCQIVEEWLEGKDYFLVEVTVSPDDKIVVE--IDHAE-GVWIEDCVELSRYIESKLNREE 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S GI +P + G V QKL G + E F Sbjct: 64 ---EDYELEVGSAGIGQPFKVLQQYYIHIGQEVEVMTK----GGQKLTGILKDADEEKFT 116 Query: 145 LEKEKRGEKDMN------ELQIAISFDSLLSAR 171 + +K+ + + + E +++ + + Sbjct: 117 VTVQKKVKLEGSKRPKLVEEDETFTYEQIKYTK 149 >gi|254526613|ref|ZP_05138665.1| hypothetical protein P9202_1265 [Prochlorococcus marinus str. MIT 9202] gi|221538037|gb|EEE40490.1| hypothetical protein P9202_1265 [Prochlorococcus marinus str. MIT 9202] Length = 155 Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 64/143 (44%), Gaps = 2/143 (1%) Query: 24 DISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDD-GNMTLRDCEELSQAISPILD 81 + +++ V E + +++ + +++I +++ + +++L DC + S ++ Sbjct: 8 KLEILLKKVANEWDLKICSLNIQTNQNPTVVKITIKKTNGDDISLEDCALFNAPASEEIE 67 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 N++ Y LE+SS G+ + DF + G V ++ + K+ L G + S Sbjct: 68 NSNLLNCSYVLEISSQGVSDELTSDRDFKTFKGFPVNVQLNQKNSKKKFLNGLLYEKSND 127 Query: 142 GFFLEKEKRGEKDMNELQIAISF 164 + + + +K + + IS Sbjct: 128 YLAINIKGKIKKIPFDEVLKISL 150 >gi|78776877|ref|YP_393192.1| hypothetical protein Suden_0678 [Sulfurimonas denitrificans DSM 1251] gi|91208367|sp|Q30SS4|RIMP_SULDN RecName: Full=Ribosome maturation factor rimP gi|78497417|gb|ABB43957.1| Protein of unknown function DUF150 [Sulfurimonas denitrificans DSM 1251] Length = 149 Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 72/154 (46%), Gaps = 19/154 (12%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLL-QIFV------ERDDGNMTLRDCEELSQAIS 77 + I+ ++ + +IS+ + + + ++ V + ++L +C LS+ IS Sbjct: 3 LEKDIESFVKSLDLELYEISVARDGDDSIYRVNVLSTQIEDGKKKGVSLDECVHLSRLIS 62 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 P+LDV + G YRLEV +PGI+R + F+ G VA + K+KL G ++ Sbjct: 63 PLLDVTPPMSGEYRLEVGTPGIERKVSTLKQFVLSIGERVALTLKS----KEKLKGLLLR 118 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 E+ +L+ + ++ + F + A+ Sbjct: 119 VEESNIYLDVDAE--------EVCVEFAQISKAK 144 >gi|33241095|ref|NP_876037.1| hypothetical protein Pro1646 [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|51316781|sp|Q7VA23|RIMP_PROMA RecName: Full=Ribosome maturation factor rimP gi|33238624|gb|AAQ00690.1| Uncharacterized YhbC family conserved protein [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 155 Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 62/143 (43%), Gaps = 11/143 (7%) Query: 37 SFRSVQISLLEE-KNLLLQIFVERDD-GNMTLRDCEELSQAISPILDVENIIEGHYRLEV 94 F +++ +L + K + +Q+ + + +++L DC LS+ I +++ +I Y LE+ Sbjct: 21 GFEIIRLEVLAQMKPMKIQLQIRHKNGSDVSLEDCSRLSRPIGEVIENSKLINQSYILEI 80 Query: 95 SSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKD 154 SSPG+ + +F + G + S G + S+ + + + K Sbjct: 81 SSPGLSDILETDKEFATFKGFPIQVSTKNKSNSTILQNGLLHTKSKEHLLINIKGKMSK- 139 Query: 155 MNELQIAISFDSLLSARLI-VTD 176 I D+++ RL TD Sbjct: 140 -------IPIDNVIQVRLASPTD 155 >gi|213964632|ref|ZP_03392832.1| conserved hypothetical protein [Corynebacterium amycolatum SK46] gi|213952825|gb|EEB64207.1| conserved hypothetical protein [Corynebacterium amycolatum SK46] Length = 190 Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 51/154 (33%), Gaps = 8/154 (5%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD- 81 I + P + ++ + ++ I + D L E+ + +S LD Sbjct: 7 EKIEQFVSPALAQIGLDVEDVKVVRAGAKSQVIVLIDADERPDLDVLEQATHEVSSALDA 66 Query: 82 -----VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 + Y LEVS+PGID P+ + + R G + + S + Sbjct: 67 AEARGEADFGAQGYTLEVSTPGIDAPLTQPRHWRRNRGRIAEISLADGSA--IAARIGAL 124 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 E L K + + + + ++ A Sbjct: 125 SPDEESIILVTSKGPKGRLKAVGQRVQLTNVARA 158 >gi|325280550|ref|YP_004253092.1| Ribosome maturation factor rimP [Odoribacter splanchnicus DSM 20712] gi|324312359|gb|ADY32912.1| Ribosome maturation factor rimP [Odoribacter splanchnicus DSM 20712] Length = 153 Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 67/156 (42%), Gaps = 16/156 (10%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 +I +I+PV+ E V++ + K+ ++++FV+ + + ++ C +S+ I L+ Sbjct: 3 TEEIKHLIEPVLTEHHLFLVELKIS--KDNVIEVFVDALE-GVNIQTCIAVSREIESSLN 59 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + + L VSS G+ P + + + G V ++ + KL G ++ + Sbjct: 60 RDE---EDFELTVSSAGLGYPFKVEQQYQKNLGKSVEIKLNDHT----KLNGILLRFTPE 112 Query: 142 GFFLE------KEKRGEKDMNELQIAISFDSLLSAR 171 +E E K + + + I + + + Sbjct: 113 EIVIEQEEKKIIEGSKRKQLVKTERTIVRNDIKEIK 148 >gi|299142251|ref|ZP_07035384.1| conserved hypothetical protein [Prevotella oris C735] gi|298576340|gb|EFI48213.1| conserved hypothetical protein [Prevotella oris C735] Length = 155 Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 58/153 (37%), Gaps = 16/153 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + ++ + + + V I + + ++++ ++ D + + DC LS+ I L + Sbjct: 7 VKRLVDEWLADKEYFLVGIDISPDDKIVVE--IDHAD-GVWIEDCVALSKYIEDRLSRDE 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S G+ +P ++ + G V D +K G + F Sbjct: 64 ---EDYELEVGSAGLGQPFKVVQQYVNFIGKEVEV----MDADGKKFQGVLKSVDGNDFT 116 Query: 145 ------LEKEKRGEKDMNELQIAISFDSLLSAR 171 ++ E + ++ A D++ + Sbjct: 117 VTVNEKVKVEGKKRPQKMDVDHAFKMDNVKYTK 149 >gi|288924203|ref|ZP_06418239.1| protein of unknown function DUF150 [Frankia sp. EUN1f] gi|288344450|gb|EFC78943.1| protein of unknown function DUF150 [Frankia sp. EUN1f] Length = 325 Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 61/174 (35%), Gaps = 27/174 (15%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 E R D + + S ++P + F +++ + + V D + L + Sbjct: 36 ESRAAAD-AIRAQLRSRLEPRLAAAGFDLEDVTVARAGSRSVVRVVVDRDEGIDLDAVAD 94 Query: 72 LSQAISPILDVEN----------------------IIEGHYRLEVSSPGIDRPMVRKSDF 109 S+ +S LD + + G Y LEV+SPG+DRP+V + Sbjct: 95 ASRIVSATLDEDEQGSAAERGDAAGARPLSGSGAGPLGGPYVLEVTSPGVDRPLVEPRHW 154 Query: 110 LRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAIS 163 R G +V S + G+++ + G L + + + Sbjct: 155 RRAVGRLVLVRRADGSE----VEGRVLSAGDDGADLAIPTGVARRGRPARTRLE 204 >gi|225021162|ref|ZP_03710354.1| hypothetical protein CORMATOL_01174 [Corynebacterium matruchotii ATCC 33806] gi|305680947|ref|ZP_07403754.1| conserved hypothetical protein [Corynebacterium matruchotii ATCC 14266] gi|224946069|gb|EEG27278.1| hypothetical protein CORMATOL_01174 [Corynebacterium matruchotii ATCC 33806] gi|305659152|gb|EFM48652.1| conserved hypothetical protein [Corynebacterium matruchotii ATCC 14266] Length = 188 Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 49/136 (36%), Gaps = 9/136 (6%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 + ++QPV ++ I + + D E ++Q IS + D Sbjct: 10 EILFPLVQPVADQYGMDIEYIKISRAGKKSVVAIAVDADNRPDSDVLEAITQEISELFDE 69 Query: 83 ENI-----IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 + Y LEVS+PG+ P+ + + R G +V K++ + Sbjct: 70 QETAGVLNFGPGYTLEVSTPGVSTPLTKPRHWRRNRGRLVTL----VDDGKKRQVRIGAL 125 Query: 138 TSETGFFLEKEKRGEK 153 + + E+ G+K Sbjct: 126 NDDETSVITIERVGKK 141 >gi|38234061|ref|NP_939828.1| hypothetical protein DIP1480 [Corynebacterium diphtheriae NCTC 13129] gi|51316647|sp|Q6NGM9|RIMP_CORDI RecName: Full=Ribosome maturation factor rimP gi|38200323|emb|CAE50008.1| Conserved hypothetical protein [Corynebacterium diphtheriae] Length = 184 Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 18/178 (10%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 ++ ++ PV+ + + I + + L D L E +S IS + D Sbjct: 7 EVLTELVTPVVAQHNMDLEGIRINKAGKKSLVAVSVDSDFRPDLDQLELVSNQISEVFDA 66 Query: 83 -----ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 E Y LEV +PG+D+P+ + R +VA E K+ + Sbjct: 67 GEAAGELSFGAGYTLEVGTPGLDQPLASARRWRRNRHRLVALE----VEGKKSVERIGAL 122 Query: 138 TSETGFFLEKEKRGEK---------DMNELQIAISFDSLLSARLIVTDELLRASLNNY 186 + + ++RG+K + + + I F L +T +L+ Sbjct: 123 NDDETAVIVVKRRGKKLVVRSVQLAENTQAVVEIEFAKPAEDELALTALEFDQALDRG 180 >gi|328948923|ref|YP_004366260.1| hypothetical protein Tresu_2093 [Treponema succinifaciens DSM 2489] gi|328449247|gb|AEB14963.1| protein of unknown function DUF150 [Treponema succinifaciens DSM 2489] Length = 155 Score = 65.8 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 64/144 (44%), Gaps = 14/144 (9%) Query: 32 VIEEMSFRSVQISLLEEKNLL-LQIFVERDD--GNMTLRDCEELSQAI-SPILDVENIIE 87 V+ F+ V++ ++ + + + + D ++ + DC + +A+ S ++ + E Sbjct: 18 VMSAEGFKLVELHVVPQNGKINISAVIASSDSKKDIGVSDCAKAHRALFSEMVKILGKNE 77 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 +E+ SPGI+R + ++F + G V + + GKI + + LE Sbjct: 78 DDISMEMCSPGIERTLRNAAEFEIFTGREVRVWDKNVND---WVCGKIKSSDKNQVTLEL 134 Query: 148 EKRGEKDMNELQIAISFDSLLSAR 171 E GE+ ++++ + A+ Sbjct: 135 EGGGEE-------SVAYADIAKAK 151 >gi|259645270|sp|A1WLI5|RIMP_VEREI RecName: Full=Ribosome maturation factor rimP Length = 245 Score = 65.8 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 63/152 (41%), Gaps = 22/152 (14%) Query: 60 DDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVAC 119 ++TL DCE++++ + L+V+ + + RLEV+SPGIDRP+ + D LR+ G V+ Sbjct: 96 PAQSVTLEDCEKVTRQLQFALEVDGV--QYQRLEVASPGIDRPLRGEQDLLRFAGSVIDI 153 Query: 120 EIVLSSGD---------KQKLIGKIMGTSETGFFLEKEK-----------RGEKDMNELQ 159 + G ++K G + T+ G+ + + Sbjct: 154 TLKAPIGGAAAGKVGATRKKFRGTLERTASGGWQIVWSDAPPPKPGQRVGKKRLPAPLQA 213 Query: 160 IAISFDSLLSARLIVTDELLRASLNNYGSYAG 191 + S D + RL + + + AG Sbjct: 214 LGFSLDEVRDMRLAPIVDFKGRTGKAGAAPAG 245 Score = 43.1 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 5/36 (13%), Positives = 18/36 (50%), Gaps = 2/36 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 + +++P++ + + V+I LL++ ++ Sbjct: 3 LQQIVEPIVTGLGYALVEIERSAGG--LLRVTIDLP 36 >gi|226355943|ref|YP_002785683.1| hypothetical protein Deide_10390 [Deinococcus deserti VCD115] gi|259585746|sp|C1CUR2|RIMP_DEIDV RecName: Full=Ribosome maturation factor rimP gi|226317933|gb|ACO45929.1| conserved hypothetical protein [Deinococcus deserti VCD115] Length = 154 Score = 65.8 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 7/129 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVER-DDGNMTLRDCEELSQAISPILDV 82 + + +E + F +++ + + ++ + V+R D+ +T+ D + S+A D Sbjct: 11 LQQIAHAAVEPLGFEVLEVQVQSQGGEKIVLVRVDRLDEQPVTMEDLTKASRAAEAEFDR 70 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 + + G YRLE SPG RP+ R F R G G+ I S Sbjct: 71 LDPVAGEYRLEFESPGSKRPLTRARHFERMLGLKARVR-----GEGHAFTAPIKAVSGDQ 125 Query: 143 FFLEKEKRG 151 + + Sbjct: 126 VTFDVSGQD 134 >gi|330997780|ref|ZP_08321615.1| hypothetical protein HMPREF9442_02717 [Paraprevotella xylaniphila YIT 11841] gi|329569668|gb|EGG51433.1| hypothetical protein HMPREF9442_02717 [Paraprevotella xylaniphila YIT 11841] Length = 155 Score = 65.8 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 59/153 (38%), Gaps = 16/153 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + +++ +E + V +++ + ++++ ++ + + + DC ELS+ I L E Sbjct: 7 VRGLVEEWLEGRDYFLVDVAVSADDRIVVE--IDHAE-GVWIEDCVELSRFIESRLSREE 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S GI +P ++ G V + +KL G + F Sbjct: 64 ---EDYELEVGSAGIGQPFKVLQQYVNHVGSEVDVLMADG----RKLHGVLTAAGPESFE 116 Query: 145 LEK------EKRGEKDMNELQIAISFDSLLSAR 171 + E E + + +D + + Sbjct: 117 VTVKVKRKLEGEKRPKWVEETVTLRYDEIKYTK 149 >gi|323343774|ref|ZP_08084001.1| hypothetical protein HMPREF0663_10536 [Prevotella oralis ATCC 33269] gi|323095593|gb|EFZ38167.1| hypothetical protein HMPREF0663_10536 [Prevotella oralis ATCC 33269] Length = 155 Score = 65.8 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 56/146 (38%), Gaps = 13/146 (8%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + ++ ++ + V + + + ++++ ++ D + + DC ELS+ I L + Sbjct: 7 VKKLVDEWLQNKDYFLVGVEISPDDKIVVE--IDHAD-GVWIEDCVELSKYIESYLSRDE 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S G+ +P ++ + G V K+ G + F Sbjct: 64 ---EDYELEVGSAGLGQPFKVPQQYINFIGKEVEVLDADGV----KVKGLLKSVDGNEFV 116 Query: 145 LEKEKRGEKDMNELQIAISFDSLLSA 170 + ++ + + + + + A Sbjct: 117 VTVREKVKVEGKKRPV---LQDVDHA 139 >gi|121609703|ref|YP_997510.1| hypothetical protein Veis_2751 [Verminephrobacter eiseniae EF01-2] gi|121554343|gb|ABM58492.1| protein of unknown function DUF150 [Verminephrobacter eiseniae EF01-2] Length = 295 Score = 65.8 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 63/152 (41%), Gaps = 22/152 (14%) Query: 60 DDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVAC 119 ++TL DCE++++ + L+V+ + + RLEV+SPGIDRP+ + D LR+ G V+ Sbjct: 146 PAQSVTLEDCEKVTRQLQFALEVDGV--QYQRLEVASPGIDRPLRGEQDLLRFAGSVIDI 203 Query: 120 EIVLSSGD---------KQKLIGKIMGTSETGFFLEKEK-----------RGEKDMNELQ 159 + G ++K G + T+ G+ + + Sbjct: 204 TLKAPIGGAAAGKVGATRKKFRGTLERTASGGWQIVWSDAPPPKPGQRVGKKRLPAPLQA 263 Query: 160 IAISFDSLLSARLIVTDELLRASLNNYGSYAG 191 + S D + RL + + + AG Sbjct: 264 LGFSLDEVRDMRLAPIVDFKGRTGKAGAAPAG 295 Score = 43.1 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 5/36 (13%), Positives = 18/36 (50%), Gaps = 2/36 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 + +++P++ + + V+I LL++ ++ Sbjct: 53 LQQIVEPIVTGLGYALVEIERSAGG--LLRVTIDLP 86 >gi|218131823|ref|ZP_03460627.1| hypothetical protein BACEGG_03444 [Bacteroides eggerthii DSM 20697] gi|317474561|ref|ZP_07933835.1| hypothetical protein HMPREF1016_00814 [Bacteroides eggerthii 1_2_48FAA] gi|217986126|gb|EEC52465.1| hypothetical protein BACEGG_03444 [Bacteroides eggerthii DSM 20697] gi|316909242|gb|EFV30922.1| hypothetical protein HMPREF1016_00814 [Bacteroides eggerthii 1_2_48FAA] Length = 155 Score = 65.4 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 64/153 (41%), Gaps = 16/153 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + ++ +E+ + V++ + + ++++I + + DC ELS+ I L+ E+ Sbjct: 7 VCQIVDEWLEDKDYFLVEVIISPDDKIVVEI---DHKEGVWIEDCVELSRYIESRLNRED 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S GI +P ++ G V +K G + G E F Sbjct: 64 ---EDYELEVGSAGIGQPFKVLQQYVNHIGKEVEVLAKDG----RKHCGILKGADEQQFT 116 Query: 145 LEKEKRGEKDMN------ELQIAISFDSLLSAR 171 + +K+ +++ + + +++ + + Sbjct: 117 VTVQKKVKEEGAKRPKMVDEDLTFTYEEIKYTK 149 >gi|149370940|ref|ZP_01890535.1| hypothetical protein SCB49_04625 [unidentified eubacterium SCB49] gi|149355726|gb|EDM44284.1| hypothetical protein SCB49_04625 [unidentified eubacterium SCB49] Length = 153 Score = 65.4 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 69/160 (43%), Gaps = 18/160 (11%) Query: 21 LAGDISSVIQPVIEEM-SFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + ++ ++ ++E S + + + + +++ ++ DD + + DC +S+A+ Sbjct: 1 MREEVEKLLDKALKENPSLFLIDLEVTADNQ--IRVTIDGDD-GVKVEDCIAVSRAVEHN 57 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD E + ++V S G P+ + +++ G V + +K+ ++ Sbjct: 58 LDEEL----DFSIDVMSCGASEPLTMQRQYVKNVGRNVLVKT----DKGEKIEATLVAAD 109 Query: 140 ETGFFLEKEKRGEKDMNELQIA------ISFDSLLSARLI 173 E L + R K + + ++ I ++ ++ +++ Sbjct: 110 EENITLNWKAREPKPVGKGKVTVKKEAVIPYNEIVQTKVM 149 >gi|300743964|ref|ZP_07072984.1| conserved hypothetical protein [Rothia dentocariosa M567] gi|300380325|gb|EFJ76888.1| conserved hypothetical protein [Rothia dentocariosa M567] Length = 221 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 72/160 (45%), Gaps = 13/160 (8%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDG---NMTLRDCEELSQAIS 77 +++ I+PV+ E S +I + N ++I V+ + +++L E+S AIS Sbjct: 54 EDEVNEAIKPVLSEFSLVLERIKISGPAANRTVEITVDYTEDRTDSLSLDSLAEISGAIS 113 Query: 78 PILDVENIIEGH--YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + + Y LEVSSPG R + + + R +VA + + ++ Sbjct: 114 QALDKADKHDEFFPYMLEVSSPGATRELTERRHWKRARTRLVAVTQTDGTE----YVARL 169 Query: 136 MGTSETGFFLEKEKRGEKDMN---ELQIAISFDSLLSARL 172 ++ G L ++K+ +K + + ++++ A + Sbjct: 170 DEITDEGPVLRRKKQTKKGQKQTYHDAVIVPWENIGHANV 209 >gi|227833357|ref|YP_002835064.1| hypothetical protein cauri_1533 [Corynebacterium aurimucosum ATCC 700975] gi|262184343|ref|ZP_06043764.1| hypothetical protein CaurA7_10158 [Corynebacterium aurimucosum ATCC 700975] gi|254800550|sp|C3PH22|RIMP_CORA7 RecName: Full=Ribosome maturation factor rimP gi|227454373|gb|ACP33126.1| hypothetical protein cauri_1533 [Corynebacterium aurimucosum ATCC 700975] Length = 188 Score = 65.0 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 53/145 (36%), Gaps = 7/145 (4%) Query: 23 GDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 ++ ++QPV + K + I ++ D+ + EELSQ IS I D Sbjct: 7 AQLTEILQPVAAARGLDIEDVKTTRAGKKSQVIIRIDGDERPSSDL-IEELSQEISEIFD 65 Query: 82 VENI-----IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 + Y LEVS+PG+D P+ + R G +V + G + + Sbjct: 66 AQEEAGTLNFGAGYTLEVSTPGVDFPLSASRHWRRNQGRLVGYALAEEPGTTRVARIGAL 125 Query: 137 GTSETGFFLEKEKRGEKDMNELQIA 161 E L + E ++ Sbjct: 126 SEDEESVALITMVKKEVRYQIERLE 150 >gi|227504823|ref|ZP_03934872.1| conserved hypothetical protein [Corynebacterium striatum ATCC 6940] gi|227198673|gb|EEI78721.1| conserved hypothetical protein [Corynebacterium striatum ATCC 6940] Length = 188 Score = 65.0 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 58/155 (37%), Gaps = 13/155 (8%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 A ++ ++QP++E + + K + I ++ D + EE+S IS Sbjct: 6 AAQLTELLQPLLEPRGLDVEDVKTTKAGKKSQVIIRIDGDQRP-SSDVLEEVSNQISEFF 64 Query: 81 DV-----ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 D E Y LEVS+PG+D P+ + R G +VA E+ + ++ Sbjct: 65 DAKEESGELNFGAGYTLEVSTPGVDLPLTAPRHWRRNRGRLVAFELTPGKSEVARIGALS 124 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 S +K + +++ A Sbjct: 125 DDASSVALITTVKKDVYFRIER------LENIARA 153 >gi|86140763|ref|ZP_01059322.1| hypothetical protein MED217_16465 [Leeuwenhoekiella blandensis MED217] gi|85832705|gb|EAQ51154.1| hypothetical protein MED217_16465 [Leeuwenhoekiella blandensis MED217] Length = 154 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 73/159 (45%), Gaps = 17/159 (10%) Query: 21 LAGDISSVIQPVIEEM-SFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L +++++ +E S + + + + + ++ D+ ++++DC +S+ + Sbjct: 2 LKEKVAALLDEAFKEYPSLYLIDLKIKGNNE--IVVIIDGDE-GVSVQDCINVSRKVEHN 58 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD E + LEV S G P+V K + + G + + + K+ G ++ Sbjct: 59 LDREE---EDFSLEVMSAGATEPLVNKRQYKKNEGRDLEVILQDGA----KIKGNLIQVH 111 Query: 140 ETGFFLEKEKRGEKDMNELQIA------ISFDSLLSARL 172 + G L ++R K++ + ++ I++D++ A++ Sbjct: 112 DEGIVLFWKERVPKEVGKGKMTVEKEEVIAYDAIKQAKV 150 >gi|298372249|ref|ZP_06982239.1| conserved hypothetical protein [Bacteroidetes oral taxon 274 str. F0058] gi|298275153|gb|EFI16704.1| conserved hypothetical protein [Bacteroidetes oral taxon 274 str. F0058] Length = 152 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 65/159 (40%), Gaps = 16/159 (10%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 I I+ + V +S+ + ++++I + ++ L C EL++ I D Sbjct: 4 KDLIRQTIEEKLASTDCFLVSLSISGDNQIMVEI---DSETSVDLDFCVELTRYIEQHFD 60 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + Y LE+ S I +P V + + + G V + +K+ G ++ Sbjct: 61 RD---AEDYSLEIGSYSITKPFVDRRQYRKNIGRKVEVLT----EESRKIRGTLVAVDND 113 Query: 142 GFFLEKEKR------GEKDMNELQIAISFDSLLSARLIV 174 GF LE E++ K + + +I + + S+ +L Sbjct: 114 GFTLEIEEKELVEGQKRKKLVKKEITLLYSSVKQTKLEF 152 >gi|282879393|ref|ZP_06288136.1| conserved hypothetical protein [Prevotella buccalis ATCC 35310] gi|281298506|gb|EFA90932.1| conserved hypothetical protein [Prevotella buccalis ATCC 35310] Length = 155 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 56/135 (41%), Gaps = 10/135 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + +++ +++ + V + + K+ + + ++ D + + DC ELS+ I LD + Sbjct: 7 VKGLVEDWLQDKDYFLVDVEVS--KDDKIVVEIDHAD-GVWIEDCVELSRYIEDRLDRD- 62 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 + Y LEV S G+ +P ++ + G V K G + F Sbjct: 63 --DEDYELEVGSAGLGQPFKVPQQYINFIGKEVEVLDGDGL----KYRGVLKSVDGNDFV 116 Query: 145 LEKEKRGEKDMNELQ 159 + +++ + + + Sbjct: 117 VTVDEKVKVEGKKRP 131 >gi|298387891|ref|ZP_06997440.1| conserved hypothetical protein [Bacteroides sp. 1_1_14] gi|298259298|gb|EFI02173.1| conserved hypothetical protein [Bacteroides sp. 1_1_14] Length = 155 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 61/142 (42%), Gaps = 10/142 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + +++ +E + V++++ + ++++ ++ + + + DC ELS+ I L+ E Sbjct: 7 VCQIVEEWLEGKDYFLVEVTVSPDDKIVVE--IDHAE-GVWIEDCVELSRFIESKLNREE 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S GI +P + G V +KL G + E F Sbjct: 64 ---EDYELEVGSAGIGQPFKVLQQYYIHIGQEVEVVTRDG----RKLAGILKDADEEKFT 116 Query: 145 LEKEKRGEKDMNELQIAISFDS 166 + EK+ + + ++ I D Sbjct: 117 VGVEKKVKLEGSKRPKLIEEDE 138 >gi|288925327|ref|ZP_06419261.1| conserved hypothetical protein [Prevotella buccae D17] gi|315606723|ref|ZP_07881733.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] gi|288337798|gb|EFC76150.1| conserved hypothetical protein [Prevotella buccae D17] gi|315251578|gb|EFU31557.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] Length = 155 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 59/136 (43%), Gaps = 10/136 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + ++++ +++ + V I + ++ + + ++ D + + DC ELS+ I L + Sbjct: 7 VKTLVEEWLQDKEYFLVDIQI--GQDDKIVVEIDHAD-GVWIEDCVELSKYIEDRLSRDE 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S G+ +P ++ + G V GD +K+ G + F Sbjct: 64 ---EDYELEVGSAGLGQPFKVAQQYINFIGKEVEV----LDGDGKKVKGLLKSVDGNDFV 116 Query: 145 LEKEKRGEKDMNELQI 160 + ++ + + + + Sbjct: 117 VSVNEKVKVEGKKRPV 132 >gi|642363|emb|CAA88035.1| 15 kD protein [Thermus thermophilus] Length = 156 Score = 64.6 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 9/133 (6%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + D+ +++ + + +++ + LL +D+ +T+ D EE S+ I L Sbjct: 15 VTVDLWQLVEEAVSPLGLDVLEVHF--ARGELLVRLERKDERPITVADLEEASRHIEAAL 72 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D E+ I G YRL V SPG R + + F R+ G + G+I+ Sbjct: 73 DREDPIPGSYRLLVESPGPKR-LFTRRHFERFQGLKAKV------PGPEGFTGRILRVEG 125 Query: 141 TGFFLEKEKRGEK 153 + + Sbjct: 126 EEVVFQVGDEERR 138 >gi|145224622|ref|YP_001135300.1| hypothetical protein Mflv_4042 [Mycobacterium gilvum PYR-GCK] gi|315444954|ref|YP_004077833.1| hypothetical protein Mspyr1_33870 [Mycobacterium sp. Spyr1] gi|259585792|sp|A4TCF3|RIMP_MYCGI RecName: Full=Ribosome maturation factor rimP gi|145217108|gb|ABP46512.1| protein of unknown function DUF150 [Mycobacterium gilvum PYR-GCK] gi|315263257|gb|ADT99998.1| uncharacterized conserved protein [Mycobacterium sp. Spyr1] Length = 178 Score = 64.6 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 53/149 (35%), Gaps = 9/149 (6%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + ++ + + + + + D + L ELS+ S LD Sbjct: 15 QRQVVELLDGEFARAGYDIEDVVIDAATRPPRIVVIADGDRGLDLDAVAELSRLASEQLD 74 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + Y LEV+SPG+DRP+ + + R G + + S L G+I Sbjct: 75 TLDTPP--YVLEVTSPGVDRPLTEEKHYRRAQGRLAEVTLADGS----TLTGRIGAVQNA 128 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSA 170 L E N I+ D+++ A Sbjct: 129 TVALVV---REARSNLTVRDIALDAVVKA 154 >gi|194476585|ref|YP_002048764.1| hypothetical protein PCC_0102 [Paulinella chromatophora] gi|171191592|gb|ACB42554.1| hypothetical protein PCC_0102 [Paulinella chromatophora] Length = 159 Score = 64.6 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 55/126 (43%), Gaps = 9/126 (7%) Query: 50 NLLLQIFV-ERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSD 108 + L+I + + ++++ DC S+ + LD ++++ Y LEVSSPGI+ ++ D Sbjct: 37 PITLKIQISVSSERDVSINDCTVFSRQVEEALDNSSLLKEAYILEVSSPGINEELINDRD 96 Query: 109 FLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLL 168 F + G V + S + G ++ + + R I + ++ Sbjct: 97 FRIFRGFPVEVVVNKSKTPTNRREGLLLERDDDSILINIRGRIH--------RIPREDVI 148 Query: 169 SARLIV 174 S LI+ Sbjct: 149 SVHLIM 154 >gi|315185929|gb|EFU19693.1| protein of unknown function DUF150 [Spirochaeta thermophila DSM 6578] Length = 160 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 63/166 (37%), Gaps = 16/166 (9%) Query: 13 PRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEE 71 PR + P++E+M + V++ L L+I + +++ DC Sbjct: 3 PRAIR-TPEEEKLYQHFVPLLEKMGYALVELHLRYRRGGAALEIVIHGAH--LSVDDCAR 59 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 + + + P + + +EV SPGIDR + + + + G + S ++ Sbjct: 60 VLRLLKPKAQLL-LDLADLHMEVMSPGIDRVLKNRDELALFVGKGLKLLDTRS---QRWE 115 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDE 177 G + +E L + +I DS+ A+L T E Sbjct: 116 GGILEAVTEDHVVLR--------KGAERRSIPIDSIGKAKLDFTQE 153 >gi|213021801|ref|ZP_03336248.1| hypothetical protein Salmonelentericaenterica_03335 [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 59 Score = 64.3 bits (155), Expect = 8e-09, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 1/60 (1%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 +I +E + + V I + + L+I+++ +D + + DC ++S +S +LDVE+ I Sbjct: 1 MITAPVEALGYELVGIEFIRGRTSTLRIYIDSED-GINVDDCADVSHQVSAVLDVEDPIS 59 >gi|29348811|ref|NP_812314.1| hypothetical protein BT_3402 [Bacteroides thetaiotaomicron VPI-5482] gi|253568844|ref|ZP_04846254.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|34223111|sp|Q8A2A3|RIMP_BACTN RecName: Full=Ribosome maturation factor rimP gi|29340717|gb|AAO78508.1| conserved hypothetical protein [Bacteroides thetaiotaomicron VPI-5482] gi|251840863|gb|EES68944.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 155 Score = 64.3 bits (155), Expect = 8e-09, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 61/142 (42%), Gaps = 10/142 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + +++ +E + V++++ + ++++ ++ + + + DC ELS+ I L+ E Sbjct: 7 VCQIVEEWLEGKDYFLVEVTVSPDDKIVVE--IDHAE-GVWIEDCVELSRFIESKLNREE 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S GI +P + G V +KL G + E F Sbjct: 64 ---EDYELEVGSAGIGQPFKVLQQYYIHIGQEVEVVTRDG----RKLAGILKDADEEKFT 116 Query: 145 LEKEKRGEKDMNELQIAISFDS 166 + +K+ + + ++ I D Sbjct: 117 VGVQKKVKLEGSKRPKLIEEDE 138 >gi|254431118|ref|ZP_05044821.1| hypothetical protein CPCC7001_1009 [Cyanobium sp. PCC 7001] gi|197625571|gb|EDY38130.1| hypothetical protein CPCC7001_1009 [Cyanobium sp. PCC 7001] Length = 158 Score = 64.3 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 68/145 (46%), Gaps = 3/145 (2%) Query: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDD-GNMTLRDCEELSQAISP 78 L ++ ++ V E+ F Q++LL + + LQ+ V+R D +++L +C LS + Sbjct: 5 LIPELETLAGKVCAELGFELRQVNLLTHRIPMTLQVLVQRGDGRDISLDECAALSAPLGE 64 Query: 79 ILDVEN-IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 + D + E Y LE+SSPG+ + + DF + G VA +G + + G ++ Sbjct: 65 VFDAAGVLGEEAYVLEISSPGVSDELQDERDFRSFRGFPVAVRFTDRNGAEARCEGLLLE 124 Query: 138 TSETGFFLEKEKRGEKDMNELQIAI 162 + + + R ++ I + Sbjct: 125 RTASELQINMRGRTKRIPRASVIQV 149 >gi|319953581|ref|YP_004164848.1| ribosome maturation factor rimp [Cellulophaga algicola DSM 14237] gi|319422241|gb|ADV49350.1| Ribosome maturation factor rimP [Cellulophaga algicola DSM 14237] Length = 153 Score = 64.3 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 64/159 (40%), Gaps = 18/159 (11%) Query: 22 AGDISSVIQPVI-EEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + +++ + E S + ++ + + + + + L+DC +++AI L Sbjct: 3 KEKVLELLEGALKENESIFLIDFTIGPANKISITLDGD---TGVNLKDCIAINRAIESNL 59 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D E + LEV+S G PMV + + G + + + K G + ++ Sbjct: 60 DREE---EDFSLEVASVGATTPMVMPRQYKKNIGRELEVKTLGG-----KFEGILTEAND 111 Query: 141 TGFFLEKEKRGEKDMNELQI------AISFDSLLSARLI 173 G LE + R K + + ++ F + A++I Sbjct: 112 QGITLEWKAREPKPIGKGKVTVQKKQEFIFSDIQEAKVI 150 >gi|311113214|ref|YP_003984436.1| hypothetical protein HMPREF0733_11545 [Rothia dentocariosa ATCC 17931] gi|310944708|gb|ADP41002.1| conserved hypothetical protein [Rothia dentocariosa ATCC 17931] Length = 221 Score = 64.3 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 70/160 (43%), Gaps = 13/160 (8%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVE---RDDGNMTLRDCEELSQAIS 77 ++ I+PV+ E S +I + N ++I V+ +++L E+S AIS Sbjct: 54 EDEVGEAIKPVLSEFSLVLERIKISGPAANRTVEITVDYMEDRTDSLSLDSLAEISGAIS 113 Query: 78 PILDVENIIEGH--YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 LD + + Y LEVSSPG R + + + R +VA + + ++ Sbjct: 114 QALDKADEHDEFFPYMLEVSSPGATRELTERRHWKRARTRLVAVTQTDGTE----YVARL 169 Query: 136 MGTSETGFFLEKEKRGEKDMN---ELQIAISFDSLLSARL 172 ++ G L ++K+ +K + + ++++ A + Sbjct: 170 DEITDEGPVLRRKKQTKKGQKQTYHDAVIVPWENIGHANV 209 >gi|167950227|ref|ZP_02537301.1| 15 kDa protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 79 Score = 64.3 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 42/70 (60%) Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 +LDVE+ I+ Y LEVSSPG+DRP+ +DF R+ G V + + G++++ G + G Sbjct: 1 MLDVEDPIKEKYDLEVSSPGLDRPLFEAADFERFKGQRVRVKTRMKIGNQRRFSGTLCGL 60 Query: 139 SETGFFLEKE 148 LE++ Sbjct: 61 EGNTILLEED 70 >gi|33863792|ref|NP_895352.1| hypothetical protein PMT1525 [Prochlorococcus marinus str. MIT 9313] gi|51316777|sp|Q7V5M7|RIMP_PROMM RecName: Full=Ribosome maturation factor rimP gi|33635375|emb|CAE21700.1| DUF150 [Prochlorococcus marinus str. MIT 9313] Length = 154 Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 56/145 (38%), Gaps = 3/145 (2%) Query: 24 DISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDD-GNMTLRDCEELSQAISPILD 81 D+ ++ ++ + + +Q+ + R D +++L DC S ++ L+ Sbjct: 8 DLETLASATAAGKGYKLCCVQVFTHLIPMTIQVQIRRKDGSDVSLDDCAHFSASMDEALE 67 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + Y LE+SSPGI + DFL + G V D + G + S+ Sbjct: 68 ASQLFTEAYVLEISSPGIGDQLHSDQDFLTFRGFPVEISFRDHDSDLHQA-GLLHKRSDE 126 Query: 142 GFFLEKEKRGEKDMNELQIAISFDS 166 + + R ++ + + + Sbjct: 127 HVHINIKGRIQRIPRKAVTCVRLTN 151 >gi|189465080|ref|ZP_03013865.1| hypothetical protein BACINT_01424 [Bacteroides intestinalis DSM 17393] gi|189437354|gb|EDV06339.1| hypothetical protein BACINT_01424 [Bacteroides intestinalis DSM 17393] Length = 155 Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 63/153 (41%), Gaps = 16/153 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + ++ +E + V++++ + ++++I + + DC ELS+ I L+ E+ Sbjct: 7 VCQIVDEWLEGKEYFLVEVTISPDDKIVVEI---DHKEGVWIEDCVELSRYIESKLNRED 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S GI +P ++ G V +KL G + E F Sbjct: 64 ---EDYELEVGSAGIGQPFKVLQQYINHIGKEVEVLRKDG----RKLCGVLKTADEQHFT 116 Query: 145 LEKEKRGEKDMNELQI------AISFDSLLSAR 171 + EK+ + + + +++D + + Sbjct: 117 VTVEKKVKPEGAKRPTLVEEDETLAYDEIKYTK 149 >gi|329964511|ref|ZP_08301565.1| hypothetical protein HMPREF9446_03170 [Bacteroides fluxus YIT 12057] gi|328524911|gb|EGF51963.1| hypothetical protein HMPREF9446_03170 [Bacteroides fluxus YIT 12057] Length = 155 Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 63/153 (41%), Gaps = 16/153 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + ++ +E + V++++ + ++++I + + DC ELS+ I L+ E Sbjct: 7 VCQIVDEWLEGKDYFLVEVTISPDDKIVVEI---DHKEGVWIEDCVELSRYIESKLNREE 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S GI +P ++ G V +KL G + + F Sbjct: 64 ---EDYELEVGSAGIGQPFKVLQQYINHVGKEVEVLTRDG----RKLGGVLKEADDRHFV 116 Query: 145 LEKEKRGEKDMN------ELQIAISFDSLLSAR 171 + +K+ +++ + + + +D + + Sbjct: 117 VTVQKKVKEEGAKRPKMVDEDLTLKYDEIKYTK 149 >gi|330836561|ref|YP_004411202.1| Ribosome maturation factor rimP [Spirochaeta coccoides DSM 17374] gi|329748464|gb|AEC01820.1| Ribosome maturation factor rimP [Spirochaeta coccoides DSM 17374] Length = 166 Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 65/159 (40%), Gaps = 5/159 (3%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQI-SLLEEKNLLLQIFVERDDGNMTLRDCEELS 73 + + ++ +I + P++ + V + + + + + ++ ++ DC ++ Sbjct: 1 MLKNELVSNEIYKELNPLVRSLGLDIVSVSRNVRQGASSVFLVIKASGRPTSVDDCAKVH 60 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 + ++ L + LEVS+PG+ R +F + G V ++Q + G Sbjct: 61 RLVASRL-EMLWQDRELSLEVSTPGLQRNFSDVQEFSLFTGDRVRIFDSQ---EEQWISG 116 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 I S+ G L + + ++ I +D + A+L Sbjct: 117 IIDEVSDAGVILTQVVGETAEPLAERMNIPYDRIKKAKL 155 >gi|158313031|ref|YP_001505539.1| hypothetical protein Franean1_1179 [Frankia sp. EAN1pec] gi|259585776|sp|A8L6F1|RIMP_FRASN RecName: Full=Ribosome maturation factor rimP gi|158108436|gb|ABW10633.1| protein of unknown function DUF150 [Frankia sp. EAN1pec] Length = 308 Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 33/172 (19%), Positives = 63/172 (36%), Gaps = 29/172 (16%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 ++ ++P + F +S+ + V DG + L + S+ +S +LD E Sbjct: 35 ELRRRLEPSLTTAGFDLEDVSVTRAGARSVVRVVVDRDGGIDLDAVADASRLVSAVLDGE 94 Query: 84 N----------------------IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121 + I G Y LEV+SPG+DRP+V + R G +V Sbjct: 95 DIGTDGAGGTGGSGGAAGGSGASPISGAYVLEVTSPGVDRPLVEPRHWRRAVGRLVVVRR 154 Query: 122 VLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAIS---FDSLLSA 170 + G+++ + G L + ++ I + ++ A Sbjct: 155 ADGVE----VEGRVLSADDEGADLAVPTAPARRGRPVRRRIERVVYATVARA 202 >gi|256824990|ref|YP_003148950.1| hypothetical protein Ksed_11450 [Kytococcus sedentarius DSM 20547] gi|256688383|gb|ACV06185.1| uncharacterized conserved protein [Kytococcus sedentarius DSM 20547] Length = 160 Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 50/138 (36%), Gaps = 16/138 (11%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFV----------ERDDGNMTLRDCE 70 + + + + + + K ++++ V + +TL Sbjct: 7 TERVWELSSAAVAPLGLEVPDVVITPAGKRSVVRVLVEPALPVDDAGDTVLEPITLDQVA 66 Query: 71 ELSQAISPILDVENII-EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ 129 E ++ +S +D ++ E Y LEVSSPG+DRP+ F R G V + Sbjct: 67 EATELVSTGIDADDPFGEQPYTLEVSSPGVDRPLTSLEHFRRAVGRRVEFR---PLEGE- 122 Query: 130 KLIGKIMGTSETGFFLEK 147 +I +E LE Sbjct: 123 PFTERITRVAEEQIVLED 140 >gi|299783111|gb|ADJ41109.1| Ribosome maturation factor rimP [Lactobacillus fermentum CECT 5716] Length = 81 Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 4/82 (4%) Query: 92 LEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRG 151 +EVSSPG +RP+ ++ D+ R V + + G + S +E + Sbjct: 1 MEVSSPGAERPLKKEVDYQRALDQYVNVSLYQQIDGHKVFEGYLRQLSPDELTIEYMDK- 59 Query: 152 EKDMNELQIAISFDSLLSARLI 173 + Q+ I D + ARL Sbjct: 60 ---TRQKQVVIPRDKVAKARLA 78 >gi|193213434|ref|YP_001999387.1| hypothetical protein Cpar_1795 [Chlorobaculum parvum NCIB 8327] gi|259585748|sp|B3QQI4|RIMP_CHLP8 RecName: Full=Ribosome maturation factor rimP gi|193086911|gb|ACF12187.1| protein of unknown function DUF150 [Chlorobaculum parvum NCIB 8327] Length = 170 Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 65/165 (39%), Gaps = 12/165 (7%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDDGNMTLRDCEELSQA 75 D + I I V + + ++++ +E D +++ C +LS+ Sbjct: 1 MDEMIRRAIDESIAEVAVATGSDIYLVEADVRGGGRIIELTIE-ADKGVSIDQCAKLSRT 59 Query: 76 ISPILDVEN----IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 I L+ + G + L VSSPGI P+ +LR G + + S G+++++ Sbjct: 60 IRARLEACEENLMLAAGDFELMVSSPGIGEPIRVSRQYLRHLGRKMKVVYLDSEGERKEI 119 Query: 132 IGKIMGT----SETGFFLE--KEKRGEKDMNELQIAISFDSLLSA 170 GK+ E +E + + +K + + ++ A Sbjct: 120 EGKLTEASLEGEEPSITIEPVVKGKKKKTSGREPLTLRLADVVKA 164 >gi|45658542|ref|YP_002628.1| hypothetical protein LIC12707 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|34222882|sp|Q8F7K3|RIMP_LEPIN RecName: Full=Ribosome maturation factor rimP gi|51316950|sp|Q72NX1|RIMP_LEPIC RecName: Full=Ribosome maturation factor rimP gi|45601785|gb|AAS71265.1| conserved hypothetical protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 162 Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 71/159 (44%), Gaps = 9/159 (5%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVER---DDGNMTLRDCEELSQAISP 78 +IS ++ V+ + + + + + + L+++ ++ G+++L +CE++S+ + Sbjct: 6 EEISGILDGVL-SLPVKLYSLKVNQRPNHSLIEVVLDNLEHPYGSVSLLECEQVSRKLKE 64 Query: 79 ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138 L+ + + L+VSS G +R + D R+ G + +++ G Sbjct: 65 ELERISPDLDYT-LKVSSAGAERKLNLPGDLDRFRGIPIRLVFRS-EESEKEQEGIFRVV 122 Query: 139 --SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 LEK ++G+K + + Q ++ +L L V Sbjct: 123 NRDGDQIVLEKFQKGKKSVVKKQTTLNLKDILKGNLYVN 161 >gi|319900403|ref|YP_004160131.1| hypothetical protein Bache_0520 [Bacteroides helcogenes P 36-108] gi|319415434|gb|ADV42545.1| protein of unknown function DUF150 [Bacteroides helcogenes P 36-108] Length = 155 Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 64/158 (40%), Gaps = 17/158 (10%) Query: 21 LAGDIS-SVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 + I ++ +E + V++ + + +L++I + + DC ELS+ I Sbjct: 2 IEKKIVCQIVDEWLEGKDYFLVEVIISPDDKILVEI---DHKEGVWIEDCVELSRYIESR 58 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 L E+ Y LEV S GI +P ++ G V +KL G + Sbjct: 59 LSRED---EDYELEVGSAGIGQPFKVLQQYINHIGSEVEVLTKDG----RKLCGVLKEAD 111 Query: 140 ETGFFLEKEKRGEKDMN------ELQIAISFDSLLSAR 171 E F + +K+ +++ + ++ ++D + + Sbjct: 112 ERHFVVTIQKKVKEEGAKRPKMVDEDLSFAYDEIKYTK 149 >gi|255536445|ref|YP_003096816.1| hypothetical protein FIC_02321 [Flavobacteriaceae bacterium 3519-10] gi|255342641|gb|ACU08754.1| conserved hypothetical protein [Flavobacteriaceae bacterium 3519-10] Length = 155 Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 62/159 (38%), Gaps = 17/159 (10%) Query: 19 MGLAGDISSVIQPVIEEM-SFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M I ++ + E V + ++ + + D +TL+DC + S+AI Sbjct: 1 MDFRTKIEELLHGFLAERPDLFLVDLKFSAGDDITV---ILDGDSGVTLQDCLDASRAIE 57 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +D E + L+V S G+ P+V F + G + + S+ + G++ Sbjct: 58 FNVDREE---HDFALQVMSAGLSEPLVSPRQFRKNIGRELDILMKDSTQ----IEGELSK 110 Query: 138 TSETGFFLEKEKRGEKDMNELQI------AISFDSLLSA 170 E L + R K++ + ++ I + + A Sbjct: 111 VDEDKITLVLQYRKPKEIGKGKMDVTEEKEILYTDIKKA 149 >gi|295086244|emb|CBK67767.1| Uncharacterized protein conserved in bacteria [Bacteroides xylanisolvens XB1A] Length = 155 Score = 63.1 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 60/142 (42%), Gaps = 10/142 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + ++ +E + V++++ + ++++ ++ + + + DC ELS+ I L+ E Sbjct: 7 VCQIVDEWLEGKDYFLVEVTVSPDDKIVVE--IDHAE-GVWIEDCVELSRYIESKLNREE 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S GI +P + G V +KL G + E F Sbjct: 64 ---EDYELEVGSAGIGQPFKVLQQYYIHIGQEVEVLTKDG----RKLAGILKDADEEKFT 116 Query: 145 LEKEKRGEKDMNELQIAISFDS 166 + +K+ + + ++ I D Sbjct: 117 VAVQKKVKLEGSKRPKLIEEDE 138 >gi|160887869|ref|ZP_02068872.1| hypothetical protein BACUNI_00272 [Bacteroides uniformis ATCC 8492] gi|270294868|ref|ZP_06201069.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317477856|ref|ZP_07937042.1| hypothetical protein HMPREF1007_00158 [Bacteroides sp. 4_1_36] gi|156862555|gb|EDO55986.1| hypothetical protein BACUNI_00272 [Bacteroides uniformis ATCC 8492] gi|270274115|gb|EFA19976.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316905992|gb|EFV27760.1| hypothetical protein HMPREF1007_00158 [Bacteroides sp. 4_1_36] Length = 155 Score = 63.1 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 63/153 (41%), Gaps = 16/153 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + ++ + + V++++ + +L++I + + DC ELS+ I L+ E+ Sbjct: 7 VCQIVDEWLAGKDYFLVEVTISPDDKILVEI---DHKEGVWIEDCVELSRYIESKLNRED 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S GI +P ++ G V +KL G + E F Sbjct: 64 ---EDYELEVGSAGIGQPFKVLQQYINHIGKEVEVLAKDG----RKLSGVLKEADEQHFV 116 Query: 145 LEKEKRGEKDMN------ELQIAISFDSLLSAR 171 + +K+ +++ + + +++ + + Sbjct: 117 VTIQKKVKEEGAKRPKLVDEDLTFTYEEIKYTK 149 >gi|261881034|ref|ZP_06007461.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270332216|gb|EFA43002.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 155 Score = 63.1 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 56/136 (41%), Gaps = 10/136 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + ++++ + + V I + + ++ ++ D + + DC ELS+ I LD E Sbjct: 7 VKNIVEEWLAGKEYFLVDIKVDSNDKITVE--IDHAD-GVYINDCVELSKFIESQLDRE- 62 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 + Y LEV S GI +P + ++ G V +K+ G + F Sbjct: 63 --QEDYELEVGSAGIGQPFKVEQQYVNHIGKPVEVLDADG----KKVRGVLKSVEGRDFV 116 Query: 145 LEKEKRGEKDMNELQI 160 + ++ + + + + Sbjct: 117 VSVNEKVKVEGKKRPV 132 >gi|298480546|ref|ZP_06998743.1| conserved hypothetical protein [Bacteroides sp. D22] gi|298273367|gb|EFI14931.1| conserved hypothetical protein [Bacteroides sp. D22] Length = 155 Score = 63.1 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 60/153 (39%), Gaps = 16/153 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + ++ +E + V++++ + ++++ ++ + + + DC ELS+ I L+ E Sbjct: 7 VCQIVDEWLEGKDYFLVEVTVSPDDKIVVE--IDHAE-GVWIEDCVELSRYIESKLNREE 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S GI +P + G V +KL G + E F Sbjct: 64 ---EDYELEVGSAGIGQPFKVLQQYYIHIGQEVEVLTKDG----RKLAGILKDADEEKFT 116 Query: 145 ------LEKEKRGEKDMNELQIAISFDSLLSAR 171 ++ E + E +++ + + Sbjct: 117 VAVQKKVKLEGAKRPKLQEEDETFTYEQIKYTK 149 >gi|237716686|ref|ZP_04547167.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262405462|ref|ZP_06082012.1| UPF0090 protein [Bacteroides sp. 2_1_22] gi|294646241|ref|ZP_06723895.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a] gi|294809091|ref|ZP_06767809.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b] gi|229442669|gb|EEO48460.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262356337|gb|EEZ05427.1| UPF0090 protein [Bacteroides sp. 2_1_22] gi|292638459|gb|EFF56823.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a] gi|294443645|gb|EFG12394.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b] Length = 155 Score = 62.7 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 60/153 (39%), Gaps = 16/153 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + ++ +E + V++++ + ++++ ++ + + + DC ELS+ I L+ E Sbjct: 7 VCQIVDEWLEGKDYFLVEVTVSPDDKIVVE--IDHAE-GVWIEDCVELSRYIESKLNREE 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S GI +P + G V +KL G + E F Sbjct: 64 ---EDYELEVGSAGIGQPFKVLQQYYIHIGQEVEVLTKDG----RKLAGILKDADEEKFT 116 Query: 145 ------LEKEKRGEKDMNELQIAISFDSLLSAR 171 ++ E + E +++ + + Sbjct: 117 VAVQKKVKLEGSKRPKLQEEDETFTYEQIKYTK 149 >gi|160883930|ref|ZP_02064933.1| hypothetical protein BACOVA_01904 [Bacteroides ovatus ATCC 8483] gi|237720418|ref|ZP_04550899.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|260172454|ref|ZP_05758866.1| hypothetical protein BacD2_11366 [Bacteroides sp. D2] gi|293370439|ref|ZP_06616992.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f] gi|299147095|ref|ZP_07040162.1| conserved hypothetical protein [Bacteroides sp. 3_1_23] gi|315920748|ref|ZP_07916988.1| conserved hypothetical protein [Bacteroides sp. D2] gi|156110660|gb|EDO12405.1| hypothetical protein BACOVA_01904 [Bacteroides ovatus ATCC 8483] gi|229450169|gb|EEO55960.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|292634431|gb|EFF52967.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f] gi|298514980|gb|EFI38862.1| conserved hypothetical protein [Bacteroides sp. 3_1_23] gi|313694623|gb|EFS31458.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 155 Score = 62.7 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 64/153 (41%), Gaps = 16/153 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + +++ +E + V++++ + ++++ ++ + + + DC ELS+ I L+ E Sbjct: 7 VCQIVEEWLEGKDYFLVEVTVSPDDKIVVE--IDHAE-GVWIEDCVELSRFIESKLNREE 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S GI +P + G V +KL G + E F Sbjct: 64 ---EDYELEVGSAGIGQPFKVLQQYYIHIGQEVEVLTGDG----RKLAGILKDADEEKFT 116 Query: 145 LEKEKRGEKDMN------ELQIAISFDSLLSAR 171 + +K+ + + + E +++ + + Sbjct: 117 VGVQKKVKTEGSKRPKLVEEDETFTYEQIKYTK 149 >gi|300727484|ref|ZP_07060875.1| conserved hypothetical protein [Prevotella bryantii B14] gi|299775187|gb|EFI71788.1| conserved hypothetical protein [Prevotella bryantii B14] Length = 155 Score = 62.7 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 62/155 (40%), Gaps = 16/155 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + ++ +E+ + V I + + ++++ ++ D + + DC ELS+ + LD + Sbjct: 7 VKKLVDEWLEDKEYFLVDIQISPDDKIVVE--IDHAD-GVWIEDCAELSRFVQEHLDRD- 62 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF- 143 + Y LEV S G+ +P ++ G V +K+ G + F Sbjct: 63 --QEDYELEVGSAGVGQPFKVAQQYVNNIGKEVEV----LDNTGKKIKGILKSVDGNNFV 116 Query: 144 -----FLEKEKRGEKDMNELQIAISFDSLLSARLI 173 ++ E + + ++ A D + + + Sbjct: 117 VSVSEKVKVEGKKRPVLQDVDYAFLMDQVKYTKYV 151 >gi|213865085|ref|ZP_03387204.1| hypothetical protein SentesT_35167 [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 57 Score = 62.7 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 1/58 (1%) Query: 28 VIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENI 85 +I +E + + V I + + L+I+++ +D + + DC ++S +S +LDVE+ Sbjct: 1 MITAPVEALGYELVGIEFIRGRTSTLRIYIDSED-GINVDDCADVSHQVSAVLDVEDP 57 >gi|91217186|ref|ZP_01254148.1| hypothetical protein P700755_04298 [Psychroflexus torquis ATCC 700755] gi|91184786|gb|EAS71167.1| hypothetical protein P700755_04298 [Psychroflexus torquis ATCC 700755] Length = 157 Score = 62.7 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 71/161 (44%), Gaps = 18/161 (11%) Query: 22 AGDISSVIQPVIE-EMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 I ++++ +E + + + + + ++ N+ + I +RD +++ DC +S+AI L Sbjct: 5 KEQILTLVKQGLEEDEALFLIDLQISDKNNINVIIDGDRD---LSITDCVNMSRAIEHNL 61 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D E + LEV+S G P+ F + G +A E + + + S+ Sbjct: 62 DRE---IEDFSLEVASCGATEPLKFPRQFKKNIGRKLAVESQN-----ESIEATLTAASD 113 Query: 141 TGFFLEKEKRGEKDMN------ELQIAISFDSLLSARLIVT 175 L+ + K + E + I+++ + A++I+ Sbjct: 114 EDIELKWTAKEPKPIGKGKHKVEKEAKIAYEDIDKAQVIIN 154 >gi|315023859|gb|EFT36861.1| hypothetical protein RAYM_00555 [Riemerella anatipestifer RA-YM] gi|325335774|gb|ADZ12048.1| Uncharacterized protein family UPF0090 [Riemerella anatipestifer RA-GD] Length = 177 Score = 62.7 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 63/159 (39%), Gaps = 17/159 (10%) Query: 19 MGLAGDISSVIQPVI-EEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M + + +++ + E + + + + + + D +TL+DC + S+AI Sbjct: 23 MSIKAQVETLLNDFLSEREDLFLIDLKVSAGDD---VVVILDGDNGVTLQDCLDASRAIE 79 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +D E + L+V S G+ P+ + F + G + + SS K+ G++ Sbjct: 80 FNMDREE---HDFSLQVMSAGLSEPLTQIRQFRKNIGRDLDILLNDSS----KIEGELAR 132 Query: 138 TSETGFFLEKEKRGEKDMNELQI------AISFDSLLSA 170 E L R K++ + ++ I + A Sbjct: 133 VEEDKVVLILRYRKPKEIGKGKVDVEEEKEILLSDIKKA 171 >gi|296139426|ref|YP_003646669.1| hypothetical protein Tpau_1712 [Tsukamurella paurometabola DSM 20162] gi|296027560|gb|ADG78330.1| protein of unknown function DUF150 [Tsukamurella paurometabola DSM 20162] Length = 190 Score = 62.7 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 6/140 (4%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 +S+VI P + + QI + + V D TL +L++ +S +D Sbjct: 5 EAAVSTVIAPHLADAGLDLEQIRITNAGPKSVIAVVVDSDAGPTLDVLADLARTLSDAVD 64 Query: 82 VEN--IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 + + LEV++PG +RP+ + R G A E+ L+ +I S Sbjct: 65 GADDVFGGQAFTLEVTTPGAERPLREARHWRRARGRQAAIELA----GGDTLLARIGPLS 120 Query: 140 ETGFFLEKEKRGEKDMNELQ 159 + + G K Sbjct: 121 DDETSVTVVLPGVKGAAPST 140 >gi|224536665|ref|ZP_03677204.1| hypothetical protein BACCELL_01541 [Bacteroides cellulosilyticus DSM 14838] gi|224521756|gb|EEF90861.1| hypothetical protein BACCELL_01541 [Bacteroides cellulosilyticus DSM 14838] Length = 155 Score = 62.7 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 64/153 (41%), Gaps = 16/153 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + ++ ++ + V++++ + ++++ ++ + + + DC ELS+ I L+ E+ Sbjct: 7 VCQIVDEWLDGKEYFLVEVAISPDDKIVVE--IDHKE-GVWIEDCVELSRYIESKLNRED 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S GI +P + G V +KL G + E F Sbjct: 64 ---EDYELEVGSAGIGQPFKVLQQYTNHIGKEVEVLRKDG----RKLCGVLKAADEQHFT 116 Query: 145 LEKEKRGEKDMNELQIA------ISFDSLLSAR 171 + EK+ + + + +++D + + Sbjct: 117 VTVEKKVKPEGAKRPQLVQEDEMLAYDEIKYTK 149 >gi|124022126|ref|YP_001016433.1| hypothetical protein P9303_04161 [Prochlorococcus marinus str. MIT 9303] gi|167012912|sp|A2C6Q8|RIMP_PROM3 RecName: Full=Ribosome maturation factor rimP gi|123962412|gb|ABM77168.1| DUF150 [Prochlorococcus marinus str. MIT 9303] Length = 154 Score = 62.7 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 56/145 (38%), Gaps = 3/145 (2%) Query: 24 DISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDD-GNMTLRDCEELSQAISPILD 81 D+ ++ ++ + + +Q+ + R D +++L DC S ++ L+ Sbjct: 8 DLETLASATATGKGYKLCCVQVFTHLIPMTIQVQIRRKDGSDVSLDDCAHFSASMDEALE 67 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + Y LE+SSPGI + DFL + G V D + G + S+ Sbjct: 68 ASQLFTEAYVLEISSPGIGDQLHSDQDFLTFRGFPVEISFRDDDSDLHQA-GLLHKRSDE 126 Query: 142 GFFLEKEKRGEKDMNELQIAISFDS 166 + + R ++ + + + Sbjct: 127 HVHINIKGRIQRIPRKAVTCVRLTN 151 >gi|288800575|ref|ZP_06406033.1| conserved hypothetical protein [Prevotella sp. oral taxon 299 str. F0039] gi|288332788|gb|EFC71268.1| conserved hypothetical protein [Prevotella sp. oral taxon 299 str. F0039] Length = 155 Score = 62.7 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 20/136 (14%), Positives = 57/136 (41%), Gaps = 10/136 (7%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + +++ +++ + V I + + + + ++ + + + DC LS+ I + + Sbjct: 7 VKQLVEQWLQDKDYFLVGIEVSNDDR--VVVEIDHSE-GVWIEDCVALSKFIEDHMSKDE 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 + Y LEV S G+ +P ++ + G V +K+ G + T F Sbjct: 64 V---DYELEVGSAGLGQPFKVPQQYINFIGKEVEVLDADG----RKVKGLLKSVEGTAFV 116 Query: 145 LEKEKRGEKDMNELQI 160 + +++ + + + + Sbjct: 117 VTVKEKVKVEGKKRPV 132 >gi|332520008|ref|ZP_08396472.1| protein of unknown function DUF150 [Lacinutrix algicola 5H-3-7-4] gi|332044567|gb|EGI80761.1| protein of unknown function DUF150 [Lacinutrix algicola 5H-3-7-4] Length = 153 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 65/155 (41%), Gaps = 18/155 (11%) Query: 25 ISSVIQPVIEE-MSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 + ++I +EE + +++ + + + I + +T+ DC +S+A+ LD E Sbjct: 6 VKNLINEALEERADLFLIDLTIGGDNAINVIIDGDN---GVTVEDCILISRAVEHNLDRE 62 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + +EV+S G + F + G + + + ++ E G Sbjct: 63 E---QDFSIEVASAGAAASLTLPRQFKKNIGRTLEVKTQT-----ETFEANLVSADENGI 114 Query: 144 FLEKEKRGEKDMNELQIA------ISFDSLLSARL 172 LE + R K + + ++ I+++ ++ A++ Sbjct: 115 SLEWKAREPKPVGKGKVTVQKQTNIAYNDIVEAKV 149 >gi|255325208|ref|ZP_05366314.1| conserved hypothetical protein [Corynebacterium tuberculostearicum SK141] gi|311739682|ref|ZP_07713517.1| conserved hypothetical protein [Corynebacterium pseudogenitalium ATCC 33035] gi|255297773|gb|EET77084.1| conserved hypothetical protein [Corynebacterium tuberculostearicum SK141] gi|311305498|gb|EFQ81566.1| conserved hypothetical protein [Corynebacterium pseudogenitalium ATCC 33035] Length = 179 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 60/155 (38%), Gaps = 13/155 (8%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 A ++ ++QP + E I + K + I ++ D + EE+S IS Sbjct: 6 AQQLTDLLQPKLAERGLDVEDIKTTKAGKKSQVIIRIDGDKRP-SSDVLEEVSNEISAFF 64 Query: 81 DV-----ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 D E Y LEVS+PG+D P+ + R G V+ ++ + IG + Sbjct: 65 DDKEAQGELNFGAGYTLEVSTPGVDLPLTAPRHWRRNRGRKVSFDLGDGKTQSAR-IGAL 123 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 ++ + K+ + E +++ A Sbjct: 124 NDAADAVILITASKKDVQARAER-----LENIARA 153 >gi|145295892|ref|YP_001138713.1| hypothetical protein cgR_1817 [Corynebacterium glutamicum R] gi|166980238|sp|A4QEZ5|RIMP_CORGB RecName: Full=Ribosome maturation factor rimP gi|140845812|dbj|BAF54811.1| hypothetical protein [Corynebacterium glutamicum R] Length = 178 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 56/160 (35%), Gaps = 15/160 (9%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 +S++I+P+ F + + + D L E SQ I + D Sbjct: 6 TEILSALIEPLAASHKFDLEGLKVTKAGPKSAVAIKVDSDSRPDLDQLEVFSQEIGELFD 65 Query: 82 V-----ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 E Y LEVS+PG+D P+ + R G +VA + ++++ Sbjct: 66 AAEQRGELNFGAGYTLEVSTPGVDNPLTLPRHWRRNRGRLVALD----QDGRKRVARIGA 121 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFD-----SLLSAR 171 + E R +K + + ++ + A+ Sbjct: 122 LNDAETHVVLIE-RNKKLLEVTTLELAHSPRAVVEIEFAK 160 >gi|325954922|ref|YP_004238582.1| ribosome maturation factor rimP [Weeksella virosa DSM 16922] gi|323437540|gb|ADX68004.1| Ribosome maturation factor rimP [Weeksella virosa DSM 16922] Length = 155 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 66/160 (41%), Gaps = 17/160 (10%) Query: 23 GDISSVIQPVIEEM-SFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + +I IEE + V + + + I + D + + + +S+ + L+ Sbjct: 4 AKVKRLIDEAIEENPTLFLVDWKVTPDNKIF--ILADG-DQGLPIEEIVRISRHVEHNLN 60 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 E + LEVSSPG+ P+ + + G ++ ++ + L G+I+ +E Sbjct: 61 REE---CDFALEVSSPGLSTPLSMPRQYKKNIGRQISITLIDG----KVLEGEIVEANEE 113 Query: 142 GFFLEKEKRGEKDMNELQI------AISFDSLLSARLIVT 175 L E R K + + +I +D++ A ++V Sbjct: 114 AVELFWETREPKPVGKGKITVEHQEEFHYDTIQKAVIVVN 153 >gi|227503406|ref|ZP_03933455.1| conserved hypothetical protein [Corynebacterium accolens ATCC 49725] gi|227075909|gb|EEI13872.1| conserved hypothetical protein [Corynebacterium accolens ATCC 49725] Length = 179 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 53/155 (34%), Gaps = 13/155 (8%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 A ++ ++QP + I + K + I ++ D + EE+S IS Sbjct: 6 AQQLTDLLQPRLAARGLDVEDIKTTKAGKKSQVIIRIDGDKRP-SSDVLEEVSDDISAFF 64 Query: 81 DV-----ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 D E Y LEVS+PG+D P+ + R G V IG + Sbjct: 65 DEKEETGELNFGAGYTLEVSTPGVDLPLTSPRHWRRNQGRKVTFN-RGDDKSHTARIGAL 123 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 + + EK E +++ A Sbjct: 124 NAAEDAVVLITSEKNEVHTEVER-----LENIAHA 153 >gi|167764122|ref|ZP_02436249.1| hypothetical protein BACSTE_02505 [Bacteroides stercoris ATCC 43183] gi|167698238|gb|EDS14817.1| hypothetical protein BACSTE_02505 [Bacteroides stercoris ATCC 43183] Length = 155 Score = 61.9 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 63/153 (41%), Gaps = 16/153 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + ++ +E+ + V++ + + ++++I + + DC ELS+ I L+ E+ Sbjct: 7 VCQIVDEWLEDKEYFLVEVIISPDDKIVVEI---DHKEGVWIEDCVELSRYIESRLNRED 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S GI +P ++ G V +K G + E F Sbjct: 64 ---EDYELEVGSAGIGQPFKVLQQYVNHIGKEVEVLAKDG----RKHCGVLKDADERQFT 116 Query: 145 LEKEKRGEKDMN------ELQIAISFDSLLSAR 171 + +K+ +++ + + +++ + + Sbjct: 117 VTVQKKVKEEGAKRPKMVDEDLTFTYEEIKYTK 149 >gi|298374482|ref|ZP_06984440.1| conserved hypothetical protein [Bacteroides sp. 3_1_19] gi|298268850|gb|EFI10505.1| conserved hypothetical protein [Bacteroides sp. 3_1_19] Length = 157 Score = 61.9 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 67/153 (43%), Gaps = 16/153 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 +S +I+ + S V + + L+ + ++ D+ +++ DC ELS+ + LD + Sbjct: 9 VSQLIEEKLASSSNYLVDVVIKPGN--LIVVEIDNDEA-VSIDDCAELSRYLEEHLDRD- 64 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S GI P +++ G+ V + S KL G + E G Sbjct: 65 --VEDYELEVGSAGITSPFKVLRQYVKNIGNEVEMLLKNGS----KLTGVLKSADENGVV 118 Query: 145 LEKEKRGEKDMNELQIAI------SFDSLLSAR 171 + EK+ + + + ++ + +FD + + Sbjct: 119 VSVEKKVKPEGAKRKVTVVEDESYTFDEIKYTK 151 >gi|329954142|ref|ZP_08295237.1| hypothetical protein HMPREF9445_00063 [Bacteroides clarus YIT 12056] gi|328528119|gb|EGF55099.1| hypothetical protein HMPREF9445_00063 [Bacteroides clarus YIT 12056] Length = 155 Score = 61.9 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 62/153 (40%), Gaps = 16/153 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + ++ +++ + V++ + + ++++I + + DC ELS+ I L+ E+ Sbjct: 7 VCQIVDEWLKDKDYFLVEVIISPDDKIVVEI---DHKEGVWIEDCVELSRYIESRLNRED 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S GI +P + G V +K G + E F Sbjct: 64 ---EDYELEVGSAGIGQPFKVLQQYTNHIGKDVEVLAKDG----RKYCGTLKDADERQFT 116 Query: 145 LEKEKRGEKDMN------ELQIAISFDSLLSAR 171 + +K+ +++ + I +++ + + Sbjct: 117 VTVQKKVKEEGAKRPKMVDEDITFTYEEIKYTK 149 >gi|33862047|ref|NP_893608.1| hypothetical protein PMM1491 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|51316771|sp|Q7V002|RIMP_PROMP RecName: Full=Ribosome maturation factor rimP gi|33634265|emb|CAE19950.1| DUF150 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 155 Score = 61.6 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 70/158 (44%), Gaps = 10/158 (6%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISL-LEEKNLLLQIFVERDD-GNMTLRDCEELSQ 74 D ++ S++Q V +E + + + + + ++++I + + + ++TL DC + Sbjct: 1 MDKECKSNLESLLQGVAKEFNLKIHSLDILTNQNPIIVKIIICKTNKDDITLDDCSRFNN 60 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 +++ N++ Y LE+SS G+ + + DF + G V E+ + + L G Sbjct: 61 PAISVIENSNLLNCSYVLEISSQGVSDELTSERDFKTFKGFPVNVELNQKNSQIKFLNGL 120 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + S+ + + + +K F+ +L L Sbjct: 121 LYEKSKDYLAINIKGKIKKI--------PFNEVLKVSL 150 >gi|258647227|ref|ZP_05734696.1| conserved hypothetical protein [Prevotella tannerae ATCC 51259] gi|260852980|gb|EEX72849.1| conserved hypothetical protein [Prevotella tannerae ATCC 51259] Length = 155 Score = 61.6 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 22/153 (14%), Positives = 52/153 (33%), Gaps = 16/153 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + +++ ++ + +++ + ++++ + + DC +LS+ I L+ + Sbjct: 7 VKQLVEEWLDGKDYFLTDLTVSPDDRIVVE---MDHVEGVWIEDCVDLSRYIEERLNRDE 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S GI +P + V +KL G + F Sbjct: 64 ---EDYELEVGSAGIGQPFKVHRQYEIHVDSPVVVLTGEG----KKLRGILTAVESDHFI 116 Query: 145 LEK------EKRGEKDMNELQIAISFDSLLSAR 171 L E + + F+ + + Sbjct: 117 LTIKEKVRPEGAKRPQWVDKDLTFRFEDVKYTK 149 >gi|262382601|ref|ZP_06075738.1| UPF0090 protein [Bacteroides sp. 2_1_33B] gi|262295479|gb|EEY83410.1| UPF0090 protein [Bacteroides sp. 2_1_33B] Length = 157 Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 67/153 (43%), Gaps = 16/153 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 +S +++ + S V + + L+ + ++ D+ +++ DC ELS+ + LD + Sbjct: 9 VSQLVEEKLASSSNYLVDVVIKPGN--LIVVEIDNDEA-VSIDDCAELSRYLEEHLDRD- 64 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S GI P +++ G+ V + S KL G + E G Sbjct: 65 --VEDYELEVGSAGITSPFKVLRQYVKNIGNEVEMLLKNGS----KLTGVLKSADENGVV 118 Query: 145 LEKEKRGEKDMNELQIAI------SFDSLLSAR 171 + EK+ + + + ++ + +FD + + Sbjct: 119 VSVEKKVKPEGAKRKVTVIEDESYTFDEIKYTK 151 >gi|19553192|ref|NP_601194.1| hypothetical protein NCgl1913 [Corynebacterium glutamicum ATCC 13032] gi|62390828|ref|YP_226230.1| hypothetical protein cg2179 [Corynebacterium glutamicum ATCC 13032] gi|34223122|sp|Q8NP37|RIMP_CORGL RecName: Full=Ribosome maturation factor rimP gi|21324758|dbj|BAB99381.1| Uncharacterized BCR [Corynebacterium glutamicum ATCC 13032] gi|41326166|emb|CAF20329.1| conserved hypothetical protein [Corynebacterium glutamicum ATCC 13032] Length = 178 Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 15/160 (9%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 +S++I+P+ F + + + D L E SQ I + D Sbjct: 6 TEILSALIEPLAASHKFDLEGLKVTKAGPKSAVAIKVDSDSRPDLDQLEVFSQEIGELFD 65 Query: 82 V-----ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 E Y LEVS+PG+D P+ + R G +VA D +K + +I Sbjct: 66 AAEQRGELNFGAGYTLEVSTPGVDNPLTLPRHWRRNRGRLVAL-----DQDGKKRVARIG 120 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFD-----SLLSAR 171 ++ + +R +K + + ++ + A+ Sbjct: 121 ALNDAETHVVLIERNKKLLEVTTLELAHSPRAVVEIEFAK 160 >gi|150010112|ref|YP_001304855.1| hypothetical protein BDI_3532 [Parabacteroides distasonis ATCC 8503] gi|255012628|ref|ZP_05284754.1| hypothetical protein B2_01880 [Bacteroides sp. 2_1_7] gi|166990853|sp|A6LHR9|RIMP_PARD8 RecName: Full=Ribosome maturation factor rimP gi|149938536|gb|ABR45233.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503] Length = 155 Score = 61.2 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 67/153 (43%), Gaps = 16/153 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 +S +I+ + S V + + L+ + ++ D+ +++ DC ELS+ + LD + Sbjct: 7 VSQLIEEKLASSSNYLVDVVIKPGN--LIVVEIDNDEA-VSIDDCAELSRYLEEHLDRD- 62 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S GI P +++ G+ V + S KL G + E G Sbjct: 63 --VEDYELEVGSAGITSPFKVLRQYVKNIGNEVEMLLKNGS----KLTGVLKSADENGVV 116 Query: 145 LEKEKRGEKDMNELQIAI------SFDSLLSAR 171 + EK+ + + + ++ + +FD + + Sbjct: 117 VSVEKKVKPEGAKRKVTVVEDESYTFDEIKYTK 149 >gi|25028437|ref|NP_738491.1| hypothetical protein CE1881 [Corynebacterium efficiens YS-314] gi|23493722|dbj|BAC18691.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length = 192 Score = 61.2 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 56/137 (40%), Gaps = 11/137 (8%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPIL 80 A +++++I PV+ + + + + I ++ D L E +SQ I + Sbjct: 16 AEELTALIAPVVATRHLDVEGLRVTKAGPKSTVAIKLDSDSRP-DLDLLEVVSQEIGELF 74 Query: 81 DV-----ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 D E Y LEVS+PG+D P+ + + R +V+ + K+++ Sbjct: 75 DAAEARGELSFGAGYLLEVSTPGVDMPLTQPRHWRRNRTRLVSLD----VDGKKRIARIG 130 Query: 136 MGTSETGFFLEKEKRGE 152 +E + E+ + Sbjct: 131 ALNAEETAVILIERNKK 147 >gi|298206856|ref|YP_003715035.1| hypothetical protein CA2559_01345 [Croceibacter atlanticus HTCC2559] gi|83849490|gb|EAP87358.1| hypothetical protein CA2559_01345 [Croceibacter atlanticus HTCC2559] Length = 153 Score = 61.2 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 72/160 (45%), Gaps = 18/160 (11%) Query: 21 LAGDISSVIQPVIEEM-SFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 L + ++Q V+++ S + ++ + ++ + I + +T+ DC +S+AI Sbjct: 2 LKEKVDKLLQAVLDDNPSLFLIDYNITNDNSIGILIDGDN---GVTVEDCITVSRAIEHN 58 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 LD E + LEV S G + +++ G V++ + + +K+ +++ Sbjct: 59 LDREE---EDFSLEVGSIGATASLTLPRQYVKNIGRVLSVKT-----ETEKIEAELVSAD 110 Query: 140 ETGFFLEKEKRGEKDMN------ELQIAISFDSLLSARLI 173 + L+ + R K + E + I ++ ++ A+++ Sbjct: 111 DNEIALKWKAREPKPVGKGKHTVEKEAVIPYEKIVEAKVM 150 >gi|302528543|ref|ZP_07280885.1| UPF0090 protein [Streptomyces sp. AA4] gi|302437438|gb|EFL09254.1| UPF0090 protein [Streptomyces sp. AA4] Length = 175 Score = 61.2 bits (147), Expect = 7e-08, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 62/157 (39%), Gaps = 9/157 (5%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + LA + ++ + F + + + L V D + L + E+S+ Sbjct: 2 LHVPNELASRLEPIVAEAVTTAGFDLDSLEVQQAGRRQLVKVVVDSDDGVGLDEVAEVSR 61 Query: 75 AISPILDV-ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 +S LD E+++ Y LEV+SPG+DRP+ ++ + R +V +G Sbjct: 62 TVSAALDENEHVLASAYTLEVTSPGLDRPLTQRRHWRRARFRLVKIT---PVEGS-AYLG 117 Query: 134 KIMGTSETGFFLEKEKRGEK----DMNELQIAISFDS 166 ++ E + + R + + + + + F Sbjct: 118 RVGHAGEKSVRVLADGRIKDVHYQSVAKAVVEVEFKQ 154 >gi|332881708|ref|ZP_08449356.1| hypothetical protein HMPREF9074_05149 [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680347|gb|EGJ53296.1| hypothetical protein HMPREF9074_05149 [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 155 Score = 61.2 bits (147), Expect = 7e-08, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 59/153 (38%), Gaps = 16/153 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + +++ +E + V +S+ + ++++ ++ + + + DC ELS+ I L E Sbjct: 7 VKGLVEEWLEGRDYFLVDVSVSADDRIVVE--IDHAE-GVWIEDCVELSRFIESRLSREE 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S GI +P ++ G V +KL G + F Sbjct: 64 ---EDYELEVGSAGIGQPFKVLQQYVNHVGSEVDVLTADG----RKLHGVLTAAGPEDFE 116 Query: 145 L------EKEKRGEKDMNELQIAISFDSLLSAR 171 + + E + + + + + + + Sbjct: 117 VTMKVKKKLEGEKRPRLVDEAVTLRYTEVKYTK 149 >gi|189345842|ref|YP_001942371.1| hypothetical protein Clim_0298 [Chlorobium limicola DSM 245] gi|226703665|sp|B3EFA9|RIMP_CHLL2 RecName: Full=Ribosome maturation factor rimP gi|189339989|gb|ACD89392.1| protein of unknown function DUF150 [Chlorobium limicola DSM 245] Length = 176 Score = 61.2 bits (147), Expect = 7e-08, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 64/176 (36%), Gaps = 17/176 (9%) Query: 17 GDMGLAGDISSVIQPVI--EEMSFRSVQISLLEEKNLL-LQIFVERDDGNMTLRDCEELS 73 + + + ++ + V + + ++I ++ D + + C S Sbjct: 4 MEEKIKACVLQALESAAGTKGEGVYLVSVRVKGAGKQTKIEILLDS-DTGIRIDQCSFFS 62 Query: 74 QAISPILDVEN----IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ 129 + I +L+ E + + L VSSPG+ P++ +LR G ++ ++ Sbjct: 63 RRIRELLENEGGTPVLDGEDFDLMVSSPGLGEPLLMPRQYLRHTGRLLRVIWKDEQQSEK 122 Query: 130 KLIGKIMGTSETGFFLE-------KEKRGEKDMNELQIAISFDSLLSARLIVTDEL 178 + G++ +T + K + + I + D ++ A + EL Sbjct: 123 TVTGRLQQVLKTEGEITAVRLVPVKTGKKSAGNVQEPIELMLDCIVRA--VPEAEL 176 >gi|256838935|ref|ZP_05544445.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|301308162|ref|ZP_07214116.1| conserved hypothetical protein [Bacteroides sp. 20_3] gi|256739854|gb|EEU53178.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|300833632|gb|EFK64248.1| conserved hypothetical protein [Bacteroides sp. 20_3] Length = 155 Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 67/153 (43%), Gaps = 16/153 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 +S +++ + S V + + L+ + ++ D+ +++ DC ELS+ + LD + Sbjct: 7 VSQLVEEKLASSSNYLVDVVIKPGN--LIVVEIDNDEA-VSIDDCAELSRYLEEHLDRD- 62 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 Y LEV S GI P +++ G+ V + S KL G + E G Sbjct: 63 --VEDYELEVGSAGITSPFKVLRQYVKNIGNEVEMLLKNGS----KLTGVLKSADENGVV 116 Query: 145 LEKEKRGEKDMNELQIAI------SFDSLLSAR 171 + EK+ + + + ++ + +FD + + Sbjct: 117 VSVEKKVKPEGAKRKVTVIEDESYTFDEIKYTK 149 >gi|116328715|ref|YP_798435.1| hypothetical protein LBL_2089 [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330627|ref|YP_800345.1| hypothetical protein LBJ_0944 [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122281618|sp|Q04U33|RIMP_LEPBJ RecName: Full=Ribosome maturation factor rimP gi|122283500|sp|Q04ZJ3|RIMP_LEPBL RecName: Full=Ribosome maturation factor rimP gi|116121459|gb|ABJ79502.1| Conserved hypothetical protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124316|gb|ABJ75587.1| Conserved hypothetical protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 162 Score = 60.8 bits (146), Expect = 9e-08, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 57/131 (43%), Gaps = 7/131 (5%) Query: 49 KNLLLQIFVER---DDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVR 105 + L+++ ++ G+++L +CE++S+ + L+ + L+VSS G +R + Sbjct: 32 NHSLIEVVLDNLEHPYGSVSLLECEQVSRKLKEELERISPDLDFT-LKVSSAGAERKLHL 90 Query: 106 KSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT--SETGFFLEKEKRGEKDMNELQIAIS 163 D R+ G V ++ G FLEK ++G+K + Q ++ Sbjct: 91 PEDIDRFRGIPVRLVFRSG-ESEKNQEGIFRIVNRDGDQVFLEKFQKGKKSAVKKQTTLN 149 Query: 164 FDSLLSARLIV 174 +L L V Sbjct: 150 LKDILKGNLYV 160 >gi|294827764|ref|NP_711122.2| hypothetical protein LA_0941 [Leptospira interrogans serovar Lai str. 56601] gi|293385607|gb|AAN48140.2| conserved hypothetical protein [Leptospira interrogans serovar Lai str. 56601] Length = 123 Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 4/120 (3%) Query: 58 ERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117 E G+++L +CE++S+ + L+ + + L+VSS G +R + D R+ G + Sbjct: 5 EHPYGSVSLLECEQVSRKLKEELERISPDLDYT-LKVSSAGAERKLNLPGDLDRFRGIPI 63 Query: 118 ACEIVLSSGDKQKLIGKIMGT--SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 +++ G LEK ++G+K + + Q ++ +L L V Sbjct: 64 RLVFRS-EESEKEQEGIFRVVNRDGDQIVLEKFQKGKKSVVKKQTTLNLKDILKGNLYVN 122 >gi|313206786|ref|YP_004045963.1| hypothetical protein Riean_1300 [Riemerella anatipestifer DSM 15868] gi|312446102|gb|ADQ82457.1| protein of unknown function DUF150 [Riemerella anatipestifer DSM 15868] Length = 155 Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 63/159 (39%), Gaps = 17/159 (10%) Query: 19 MGLAGDISSVIQPVI-EEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M + + +++ + E + + + + + + D +TL+DC + S+AI Sbjct: 1 MSIKAQVETLLNDFLSEREDLFLIDLKVSAGDD---VVVILDGDNGVTLQDCLDASRAIE 57 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 +D E + L+V S G+ P+ + F + G + + SS K+ G++ Sbjct: 58 FNMDREE---HDFSLQVMSAGLSEPLTQIRQFRKNIGRDLDILLNDSS----KIEGELAR 110 Query: 138 TSETGFFLEKEKRGEKDMNELQI------AISFDSLLSA 170 E L R K++ + +I I + A Sbjct: 111 VEENKVVLILRYRKPKEIGKGKIDVEEEKEILLSDIKKA 149 >gi|78189425|ref|YP_379763.1| hypothetical protein Cag_1464 [Chlorobium chlorochromatii CaD3] gi|91208007|sp|Q3AQK5|RIMP_CHLCH RecName: Full=Ribosome maturation factor rimP gi|78171624|gb|ABB28720.1| conserved hypothetical protein [Chlorobium chlorochromatii CaD3] Length = 179 Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 61/159 (38%), Gaps = 18/159 (11%) Query: 35 EMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPILDVEN-IIEGHYRL 92 V ++L L++ V+ D + + C +S+ I L+ ++ + + Sbjct: 24 AEGVYVVSVALKGRAGQQKLEVLVDS-DKGIAVEQCAWVSRRILEKLEEDDEPLSEEIAI 82 Query: 93 EVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS----------ETG 142 EVSSPG+ P+ + R G ++ G + ++ G + ++ Sbjct: 83 EVSSPGLGTPLQLPRQYYRHLGKLLHVRYRTPEGAEAEIEGYLQEAQLDGVNGGDSADSV 142 Query: 143 FFLEKEKRGEKDMNE---LQIAISFDSLLSARLIVTDEL 178 L+ + +G++ N I + ++ A + EL Sbjct: 143 IVLKPKVQGKRPRNAQPLENIRLPLSRIIKA--VPEAEL 179 >gi|319441433|ref|ZP_07990589.1| ribosome maturation protein RimP [Corynebacterium variabile DSM 44702] Length = 186 Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 11/138 (7%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 ++ + +P+ + F +++ D L EELSQA+S D Sbjct: 6 EQELREIAEPLAASLGFDVEAVNITRAGAKSAVRLAVDGDTRPDLDQLEELSQAVSAEFD 65 Query: 82 VENI-----IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 Y LE+++PG+D P+ F R G +V K+ I + Sbjct: 66 ARETAGTLNFGPGYTLELTTPGLDTPLTAGRHFRRNVGRLVLLR------GKKLRIAGVD 119 Query: 137 GTSETGFFLEKEKRGEKD 154 + +L + +KD Sbjct: 120 EDGDGTVWLIRPAAKKKD 137 >gi|306836352|ref|ZP_07469330.1| conserved hypothetical protein [Corynebacterium accolens ATCC 49726] gi|304567712|gb|EFM43299.1| conserved hypothetical protein [Corynebacterium accolens ATCC 49726] Length = 179 Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 53/155 (34%), Gaps = 13/155 (8%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 A ++ ++QP + I + K + I ++ D + EE+S IS Sbjct: 6 AQQLADLLQPRLAARGLDVEDIKTTKAGKKSQVIIRIDGDKRP-SSDVLEEVSDDISAFF 64 Query: 81 DV-----ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 D E Y LEVS+PG+D P+ + R G V IG + Sbjct: 65 DEKEETGELNFGAGYTLEVSTPGVDLPLTAPRHWRRNQGRKVTFN-RGDDKSHTARIGAL 123 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 + + EK E +++ A Sbjct: 124 NAAEDAVVLITSEKNEVHTEVER-----LENIAHA 153 >gi|225011159|ref|ZP_03701621.1| protein of unknown function DUF150 [Flavobacteria bacterium MS024-3C] gi|225004721|gb|EEG42681.1| protein of unknown function DUF150 [Flavobacteria bacterium MS024-3C] Length = 153 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 66/158 (41%), Gaps = 18/158 (11%) Query: 22 AGDISSVIQPVIEEM-SFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 ++ ++ +EE S + + +K + + + + +TL+DC +S+AI L Sbjct: 3 EKEVRILLDAALEENPSLFLIDFKVTTDKKISVVLDGD---TGVTLQDCMNVSRAIEHNL 59 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 D E I + L+V+S G P+V + + + + G ++ + Sbjct: 60 DKETI---DFGLDVASAGATTPLVMPRQYKKNLQRSLTVRTENEV-----VEGNLIQILD 111 Query: 141 TGFFLEKEKRGEKDMNELQI------AISFDSLLSARL 172 G L+ + R K + + ++ I+F + A++ Sbjct: 112 HGIVLQWKAREPKPIGKGKVTVTKEQEIAFTDIKEAKV 149 >gi|259507496|ref|ZP_05750396.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|34223119|sp|Q8FPA4|RIMP_COREF RecName: Full=Ribosome maturation factor rimP gi|259164881|gb|EEW49435.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length = 182 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 56/137 (40%), Gaps = 11/137 (8%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNL-LLQIFVERDDGNMTLRDCEELSQAISPIL 80 A +++++I PV+ + + + + I ++ D L E +SQ I + Sbjct: 6 AEELTALIAPVVATRHLDVEGLRVTKAGPKSTVAIKLDSDSRP-DLDLLEVVSQEIGELF 64 Query: 81 DV-----ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 D E Y LEVS+PG+D P+ + + R +V+ + K+++ Sbjct: 65 DAAEARGELSFGAGYLLEVSTPGVDMPLTQPRHWRRNRTRLVSLD----VDGKKRIARIG 120 Query: 136 MGTSETGFFLEKEKRGE 152 +E + E+ + Sbjct: 121 ALNAEETAVILIERNKK 137 >gi|78779968|ref|YP_398080.1| hypothetical protein PMT9312_1584 [Prochlorococcus marinus str. MIT 9312] gi|91208012|sp|Q318Q1|RIMP_PROM9 RecName: Full=Ribosome maturation factor rimP gi|78713467|gb|ABB50644.1| Protein of unknown function DUF150 [Prochlorococcus marinus str. MIT 9312] Length = 155 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 64/150 (42%), Gaps = 2/150 (1%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN--MTLRDCEELSQ 74 + + ++++ V + ++ ++L +N ++ + + ++L DC + Sbjct: 1 MNKEQKSRLENLLEKVANVLDYKICSVNLQTNQNPIVIKIIIKKTNGDDISLDDCALFNT 60 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 S ++ N+++ Y LE+SS G+ + + DF + G V E+ + + L G Sbjct: 61 PASEEIENSNLLKCSYVLEISSQGVSDELTSERDFKTFKGFPVNVELNQKNSKIKFLNGL 120 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISF 164 + S+ + + + +K + IS Sbjct: 121 LYEKSKDYLAINIKGKIKKIPFNEVLKISL 150 >gi|294675007|ref|YP_003575623.1| hypothetical protein PRU_2369 [Prevotella ruminicola 23] gi|294474084|gb|ADE83473.1| conserved hypothetical protein [Prevotella ruminicola 23] Length = 155 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 63/159 (39%), Gaps = 16/159 (10%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 I ++ + ++ + V ++ + + I ++ D + + DC LS+ + L Sbjct: 4 KEIIQTLTEEWLQGNEYFLVDVNFAADDR--IVIEIDHAD-GVWIEDCAALSRFLQERLG 60 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 E G Y LEV S G+ +P ++ G + + D +K+ G + Sbjct: 61 EE---LGEYELEVGSAGLGQPFKVAQQYMNHIGD----TLEVLQADGKKVQGTLKAVDAP 113 Query: 142 GFFLEKEKRGEKDMNELQIAIS------FDSLLSARLIV 174 F + +++ + + + + + D + A+ ++ Sbjct: 114 SFTITVQEKQKIEGKKRPVLVDVDKTYQMDEVKYAKYVL 152 >gi|258652413|ref|YP_003201569.1| hypothetical protein Namu_2203 [Nakamurella multipartita DSM 44233] gi|258555638|gb|ACV78580.1| protein of unknown function DUF150 [Nakamurella multipartita DSM 44233] Length = 173 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 67/160 (41%), Gaps = 9/160 (5%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAI 76 G G + +V+ V + ++++ + V D ++L D E+S+ I Sbjct: 1 MVDGDEGRLRAVVTEVTAARGYDLEELAVRSIGRRRVVRVVVDSDDGVSLDDAAEVSREI 60 Query: 77 SPILDVEN--IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 S LD + + E Y LEV+SPG+ RP+ F R G ++ + G Sbjct: 61 SERLDGPDDPMGEHPYTLEVTSPGVGRPLREPRHFRRARGRLLVVTTEQGP-----VTGH 115 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++ S+TG L +K + + ++ +A++ V Sbjct: 116 LLRASDTGIELAL--APDKKGVVTVVELPLTAIATAKVEV 153 >gi|227488650|ref|ZP_03918966.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51867] gi|227091544|gb|EEI26856.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51867] Length = 180 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 24/154 (15%), Positives = 49/154 (31%), Gaps = 7/154 (4%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + + +++ +E + + + + E S A+S + D Sbjct: 6 EKTLLDIATETGRPWGLFPLRVKTVEAGPHSTVTVIVDSESDPDIDAVGEFSTALSQVFD 65 Query: 82 V-----ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 E Y LEVS+PGID P+ R + R G V + + + Sbjct: 66 EKEASKELSFGAGYNLEVSTPGIDEPLTRPYQWARNRGRAVTVTLKG--QEPATYRIGAL 123 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 E L + + + + ++ + A Sbjct: 124 SPEEDRVVLIYSEGTKGNKKAKKTIVALHDVKRA 157 >gi|227543253|ref|ZP_03973302.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51866] gi|227181062|gb|EEI62034.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51866] Length = 180 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 24/154 (15%), Positives = 50/154 (32%), Gaps = 7/154 (4%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 + + +++ +E + + + + E S A+S + D Sbjct: 6 EKTLLDIATETGRPWGLFPLRVKTVEAGPHSTVTVIVDSESDPDIDAVGEFSTALSQVFD 65 Query: 82 V-----ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIM 136 E Y LEVS+PGID P+ R + R G V+ + + + Sbjct: 66 EKEASKELSFGAGYNLEVSTPGIDEPLTRPYQWARNRGRAVSVTLKG--QEPATYRIGAL 123 Query: 137 GTSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 E L + + + + ++ + A Sbjct: 124 SPEEDRVVLIYSEGTKGNKKAKKTIVALHDVERA 157 >gi|150024571|ref|YP_001295397.1| hypothetical protein FP0468 [Flavobacterium psychrophilum JIP02/86] gi|259585775|sp|A6GWV6|RIMP_FLAPJ RecName: Full=Ribosome maturation factor rimP gi|149771112|emb|CAL42579.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86] Length = 154 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 24/159 (15%), Positives = 66/159 (41%), Gaps = 18/159 (11%) Query: 19 MGLAGDISSVIQPVIEEM-SFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M + +++ + E + + +++ + +++ + + + L+DC +S++I Sbjct: 1 MAFKEKVKELLEQGLAEYPNLFLIDLNINDSNKIIITLDGDN---GVQLQDCINISRSID 57 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD E + + LEV+S G+ P+ + + G + + Q + ++ Sbjct: 58 NNLDREEV---DFALEVASAGVSLPLKLVRQYKKNIGRTLKIKTAT-----QTIEALLLE 109 Query: 138 TSETGFFLEKEKRGEKDMNELQIA------ISFDSLLSA 170 S+ +E R K + + + I++ ++ A Sbjct: 110 VSDQDITVEWSSREPKKIGKGKETVVHNEKIAYAAIQEA 148 >gi|218509056|ref|ZP_03506934.1| hypothetical protein RetlB5_16765 [Rhizobium etli Brasil 5] Length = 83 Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 2/69 (2%) Query: 119 CEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDEL 178 CE + ++++ GKI+ GF LE+++ E +++I F +L A+LI+TD+L Sbjct: 1 CETSIMICNRKRFRGKIVEADADGFTLERDQIAY--GEEPKVSIPFTALSDAKLILTDDL 58 Query: 179 LRASLNNYG 187 +R +L Sbjct: 59 IRDALRADK 67 >gi|256419697|ref|YP_003120350.1| hypothetical protein Cpin_0651 [Chitinophaga pinensis DSM 2588] gi|256034605|gb|ACU58149.1| protein of unknown function DUF150 [Chitinophaga pinensis DSM 2588] Length = 169 Score = 58.5 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 63/162 (38%), Gaps = 11/162 (6%) Query: 13 PRIFGDMGLAGDISSVIQPVIEEM-SFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 + + I + ++ + V + + N+ L FV+ D + + Sbjct: 13 RFFMANEQVITTIRDMAAEMLSPYPEYFVVDVRIKPTNNIKL--FVDG-DNGVPVDKLVA 69 Query: 72 LSQAISPILDVENIIEGHYR-LEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 ++ + L+ + + LEVSSPG+D P+ +++ G V ++ +S Sbjct: 70 FNRNLYSRLEEATLFPDNDFSLEVSSPGLDEPLKLLRQYVKNIGRKVTVTLLDNSEK--- 126 Query: 131 LIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G ++ +E + E++ K + I+ + + ++ Sbjct: 127 -EGTLLSATEAVVTI--EEQVGKKKEKKTTEINLNEIKHTKV 165 >gi|88802099|ref|ZP_01117627.1| hypothetical protein PI23P_05532 [Polaribacter irgensii 23-P] gi|88782757|gb|EAR13934.1| hypothetical protein PI23P_05532 [Polaribacter irgensii 23-P] Length = 153 Score = 58.5 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 64/154 (41%), Gaps = 16/154 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 I ++ + ++ I L N +++ V+ D + L +C +S+ I LD E Sbjct: 6 IKDLVDEAL-ALNDSLYLIELSISVNDKIKVVVDG-DNGVPLSECIRISKNIDANLDRE- 62 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 + LEV++P I P+ K +L+ ++ + ++ G + E Sbjct: 63 --SEDFSLEVTTPDIAHPLKVKRQYLKNLNRILKVKTAA-----EEFEGTLTAADEDKII 115 Query: 145 LEKEKRGEKDMNE------LQIAISFDSLLSARL 172 L+ + R K++ + I I+ ++ AR+ Sbjct: 116 LQWKAREPKEIGKGKVTVLKTITIAHTDIIEARV 149 >gi|126663077|ref|ZP_01734075.1| hypothetical protein FBBAL38_06985 [Flavobacteria bacterium BAL38] gi|126624735|gb|EAZ95425.1| hypothetical protein FBBAL38_06985 [Flavobacteria bacterium BAL38] Length = 155 Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 65/159 (40%), Gaps = 17/159 (10%) Query: 19 MGLAGDISSVIQPVIEEMS-FRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M + V+ + E + +S+ E + + + D + L+DC ++S+A+ Sbjct: 1 MTFKNKVQEVLDAALAEREQLFLIDLSINEANKISV---ILDGDSGVNLQDCIDISRAVE 57 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD E + LEV+S G+ P+ + + G + + + + K+ Sbjct: 58 NNLDREE---QDFSLEVASAGVSSPLKLVRQYKKNIGRTIKVKTISLEE----IEAKLTM 110 Query: 138 TSETGFFLEKEKRGEKDMN------ELQIAISFDSLLSA 170 + LE + R K + + ++ +S++++ A Sbjct: 111 ADDEKITLEWQDREPKKIGKGKETVDKKLQLSYENIKEA 149 >gi|240146878|ref|ZP_04745479.1| protein associated with NUS operon [Roseburia intestinalis L1-82] gi|257200976|gb|EEU99260.1| protein associated with NUS operon [Roseburia intestinalis L1-82] Length = 74 Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 40/68 (58%), Gaps = 2/68 (2%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGNMTLRDCEELSQAISPIL 80 +I P+++ M+F V + ++E L+ ++++ +G +T+ DCE +++ ++ IL Sbjct: 8 ETRTEELITPILDRMNFELVDVEYVKEGGAWYLRAYIDK-EGGITVNDCEAVAREMNEIL 66 Query: 81 DVENIIEG 88 D E+ +E Sbjct: 67 DREDFVED 74 >gi|333029429|ref|ZP_08457490.1| Ribosome maturation factor rimP [Bacteroides coprosuis DSM 18011] gi|332740026|gb|EGJ70508.1| Ribosome maturation factor rimP [Bacteroides coprosuis DSM 18011] Length = 155 Score = 58.1 bits (139), Expect = 6e-07, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 64/153 (41%), Gaps = 16/153 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 + +++ +E + V++S+ E + + + ++ + + + DC +LS+ I L+ + Sbjct: 7 VHQIVEEWLEGKEYFLVEVSV--ESDDKIVVEIDHAE-GVWIEDCVDLSRFIESKLNRDE 63 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF- 143 Y LEV S G+ +P + G V KLIG+++ +E G Sbjct: 64 ---EDYELEVGSAGVGQPFKVLQQYYNHIGRQVEVLEKTGI----KLIGELLDVTEDGIK 116 Query: 144 -----FLEKEKRGEKDMNELQIAISFDSLLSAR 171 ++ E + ++ I F+ + + Sbjct: 117 VAVEKKVKVEGSKRPKLIAVEEDIPFEKIKYTK 149 >gi|300933075|ref|ZP_07148331.1| hypothetical protein CresD4_03348 [Corynebacterium resistens DSM 45100] Length = 200 Score = 58.1 bits (139), Expect = 6e-07, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 66/183 (36%), Gaps = 37/183 (20%) Query: 24 DISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVE-----------------RDDGNMT 65 + S+++ V+ + I + ++IFV+ + Sbjct: 8 QLKSLLETVVHQYGCVIEDIQVARAGAKSSVKIFVDSEVAVPTTLASATEVQPHEFTGPD 67 Query: 66 LRDCEELSQAISPILDVENI-----IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120 L E+LS+ IS LD Y LEV S G P+V+ +++ G +V Sbjct: 68 LDAVEQLSRDISAELDRAEEQGQLNFGPGYTLEVGSAGASAPIVKPRHWVKNLGRLVKL- 126 Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGE--------KDMNELQIAISFDSLLSA-- 170 G + ++ +E G L +K E ++++ ++ I F + A Sbjct: 127 ---PEGPLKGAKARVAQAAEDGVILIFKKGKELNVSLHSLEEVSGARVEIEFSKVPEAEQ 183 Query: 171 RLI 173 L+ Sbjct: 184 HLV 186 >gi|78187635|ref|YP_375678.1| hypothetical protein Plut_1781 [Chlorobium luteolum DSM 273] gi|78167537|gb|ABB24635.1| conserved hypothetical protein [Chlorobium luteolum DSM 273] Length = 191 Score = 57.7 bits (138), Expect = 8e-07, Method: Composition-based stats. Identities = 26/174 (14%), Positives = 67/174 (38%), Gaps = 18/174 (10%) Query: 14 RIFGDMGLAGDISSVIQPVIEE------MSFRSVQISLLEEK-NLLLQIFVERDDGNMTL 66 I + I ++Q ++E+ V +++ + +++ ++ D + + Sbjct: 13 FIAMQGSIDSHIEGIVQNILEDSVGTKGEGVYLVAMTVKGSAVHRKIEVILD-ADSGVRI 71 Query: 67 RDCEELSQAISPILDVENIIE----GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIV 122 C ++ I L+ + + + L V SPG+ P+V + + R G ++ Sbjct: 72 DQCSFFARRIRERLEEDEALSGTMGEDFDLVVGSPGLGEPLVLRRQYGRHVGRLLRVWYR 131 Query: 123 LSSGDKQKLIGKIMGTS----ETGFFLEKEKRGEKDMNELQ--IAISFDSLLSA 170 + G + ++ G + S L+ + +K E + + D++ A Sbjct: 132 DTEGVEHEVAGHLQAVSLTEGGGSITLKPQTAKKKGRQEETEDMTLELDAVSRA 185 >gi|183220910|ref|YP_001838906.1| hypothetical protein LEPBI_I1523 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911006|ref|YP_001962561.1| hypothetical protein LBF_1470 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|226734181|sp|B0SH16|RIMP_LEPBA RecName: Full=Ribosome maturation factor rimP gi|226734677|sp|B0SQH2|RIMP_LEPBP RecName: Full=Ribosome maturation factor rimP gi|167775682|gb|ABZ93983.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779332|gb|ABZ97630.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 162 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 68/164 (41%), Gaps = 11/164 (6%) Query: 16 FGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLL-QIFVER---DDGNMTLRDCEE 71 + + + I V+ P + + + KN L +I ++ G+ +L DCE Sbjct: 3 YTEENIRELILRVLAPPLA-----LFSLQVQNRKNHALIEIELDHLTDKTGSASLEDCET 57 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+ + LD L+VSS G +R + D +R+ G +V E+ L SG K Sbjct: 58 VSRRLKEELDQWGEEFDFT-LQVSSAGAERVLRLPEDLIRFQGLLVKLEVPLESGKWDKR 116 Query: 132 IGKIMGTSETGFFLEK-EKRGEKDMNELQIAISFDSLLSARLIV 174 + ++ S L +++ N+ +++ + L + Sbjct: 117 LYRLGPVSGDSVELTLYDRKTRHKKNQKSVSMPIAEIRKGNLYL 160 >gi|123966904|ref|YP_001011985.1| hypothetical protein P9515_16711 [Prochlorococcus marinus str. MIT 9515] gi|166980184|sp|A2BYL7|RIMP_PROM5 RecName: Full=Ribosome maturation factor rimP gi|123201270|gb|ABM72878.1| DUF150 [Prochlorococcus marinus str. MIT 9515] Length = 155 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 70/150 (46%), Gaps = 2/150 (1%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD--DGNMTLRDCEELSQ 74 D L ++ +++ V +E + + ++LL +N ++ + + + ++T+ DC + Sbjct: 1 MDKELKNNLEILLEEVAKEFNLKVYSLNLLTNQNPIIIKIIIKKTNEEDITIEDCSRFNN 60 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 S +++ N+++ Y LE+SS G+ + + DF + G V E+ + + L G Sbjct: 61 PASAVIENSNLLKCSYVLEISSQGVSDELTSERDFKTFKGFPVNVELNQKNSRIKLLNGL 120 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISF 164 + S+ + + + +K + IS Sbjct: 121 LYEKSKDYLAINIKGKIKKIPFNEVLKISL 150 >gi|84498574|ref|ZP_00997337.1| hypothetical protein JNB_20318 [Janibacter sp. HTCC2649] gi|84381107|gb|EAP96992.1| hypothetical protein JNB_20318 [Janibacter sp. HTCC2649] Length = 187 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 18/158 (11%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLL---------LQIFVERDD--GNMTLRDCEELS 73 + +I + ++ + L++ + + +++L + + Sbjct: 7 VQELIDGALHGSGVVLEEVVVTPAGRRRVVRVVVDRALEVTGDVTETLPSLSLDEIASAT 66 Query: 74 QAISPILDVEN-IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 +S LD + + E Y LEV+SPG+ RP+ S F R G +V + + Sbjct: 67 HTVSDALDESDVLGEQPYTLEVTSPGVSRPLTAASHFRRNVGRLVVLT---PQDGE-PVT 122 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 G+I+ + L + + ++ ++ A Sbjct: 123 GRIVRAGDDDLTLLVPAVKKAPERDEI--FAYAAIDRA 158 >gi|317968932|ref|ZP_07970322.1| hypothetical protein SCB02_05303 [Synechococcus sp. CB0205] Length = 122 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 9/115 (7%) Query: 60 DDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVAC 119 D G+++L +C S + ++ +++ Y LEVSSPG+ + DF + G V+ Sbjct: 11 DGGDVSLDNCASFSGVLGDAIENSGLLQDPYVLEVSSPGVSEQLSDDRDFRSFRGFPVSI 70 Query: 120 EIVL-SSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 SG + G ++ E L R + I ++S +L+ Sbjct: 71 RYRDTKSGGDNEREGLLLERDEENVLLNVRGR--------TVRIPRPDVISVKLV 117 >gi|325971225|ref|YP_004247416.1| ribosome maturation factor rimP [Spirochaeta sp. Buddy] gi|324026463|gb|ADY13222.1| Ribosome maturation factor rimP [Spirochaeta sp. Buddy] Length = 166 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 22/144 (15%), Positives = 57/144 (39%), Gaps = 5/144 (3%) Query: 30 QPVIEEMSFRSVQI-SLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEG 88 +P++ M V+I + ++++ + + + +++ C ++ ++ + E Sbjct: 16 EPLLNAMGIALVEINRVDRGNSVIVTMVIVAKETEVSIDHCAKV-YRLAYPRMELQLGER 74 Query: 89 HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKE 148 +LEVS+PG+ R +F + G + + G I E L + Sbjct: 75 DLQLEVSTPGLQRTFKDVYEFSLFTGKRARVYDTS---KEAWVSGIITQADEKTVQLAQV 131 Query: 149 KRGEKDMNELQIAISFDSLLSARL 172 ++ +++ F + A+L Sbjct: 132 YIEDEKEMIDTMSVEFSVIQKAKL 155 >gi|213026073|ref|ZP_03340520.1| hypothetical protein Salmonelentericaenterica_28018 [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 59 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 37/59 (62%) Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 +S +S +LDVE+ I Y LEVSSPG+DRPM + R+ G VA + ++ +++K Sbjct: 1 MSHQVSAVLDVEDPISVAYNLEVSSPGLDRPMFTADHYARFQGEEVALVLRMAVQNRRK 59 >gi|239917226|ref|YP_002956784.1| hypothetical protein Mlut_06980 [Micrococcus luteus NCTC 2665] gi|281414300|ref|ZP_06246042.1| hypothetical protein MlutN2_03688 [Micrococcus luteus NCTC 2665] gi|239838433|gb|ACS30230.1| uncharacterized conserved protein [Micrococcus luteus NCTC 2665] Length = 195 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 65/179 (36%), Gaps = 23/179 (12%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 M+ST E R + LA D V+ + ++ +++ ++R Sbjct: 1 MDSTDRRDDHAELRTRVEEALAAD--DVVVEQVRATG---------TAEHRTVEVVLDRA 49 Query: 61 D--GNMTLRDCEELSQAISPILD-----VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWN 113 ++L D LS +S LD V + G Y LEV++ G+DRP+ R Sbjct: 50 SGTYGLSLDDVARLSGRVSAALDALGDHVPGVGAGEYLLEVTTAGVDRPLTEPRHLARNV 109 Query: 114 GHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G +V + ++ ++ L + K ++ + + + RL Sbjct: 110 GRLVEVS----VDGAAPVTARLKDVTDDDVELAVVRPPAKKGMRVK-ELPAERVALDRL 163 >gi|119356206|ref|YP_910850.1| hypothetical protein Cpha266_0367 [Chlorobium phaeobacteroides DSM 266] gi|259585750|sp|A1BDE9|RIMP_CHLPD RecName: Full=Ribosome maturation factor rimP gi|119353555|gb|ABL64426.1| protein of unknown function DUF150 [Chlorobium phaeobacteroides DSM 266] Length = 173 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 68/176 (38%), Gaps = 17/176 (9%) Query: 17 GDMGLAGDISSVIQPVI--EEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELS 73 + + + V++ + V +S+ K +++ V+ D + + C LS Sbjct: 1 MEEKIRRCVLQVLEATAGTKGEGVYLVSLSIKGSGKGTSIEVLVDT-DTGIRIDQCAFLS 59 Query: 74 QAISPILDVENIIE----GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ 129 + I L+VE + + L+V+SPG+ + ++ + + R G + G Sbjct: 60 RRIRECLEVEEESDGMSGDDFNLDVASPGLGKAIILQRQYARHVGRLFRVTFREEDGSMT 119 Query: 130 KLIGKIMGT---SETGFFLEKE----KRGEKDMNELQIAISFDSLLSARLIVTDEL 178 ++ G + E L E K+ K ++ + D ++ A + EL Sbjct: 120 EISGHLREILFPEEENASLVIEPLGKKKAGKKVSSENRTLRLDRVIRA--VPEAEL 173 >gi|34223166|sp|Q9Z5J2|RIMP_MYCLE RecName: Full=Putative ribosome maturation factor rimP Length = 150 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 2/97 (2%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDC-EELSQAISPILDV 82 + ++ + + + + I V D + RD LS ++S +LD Sbjct: 10 QVIELLGGEVARAGYEVEDVIIHTWSQPF-WITVLADGDTVLARDIIATLSHSVSALLDG 68 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVAC 119 + I Y LEVSS G+ RP + F R G V Sbjct: 69 LDNIVDRYFLEVSSLGMGRPFTSEKHFRRARGRKVEL 105 >gi|34540098|ref|NP_904577.1| hypothetical protein PG0253 [Porphyromonas gingivalis W83] gi|51316749|sp|Q7MXE6|RIMP_PORGI RecName: Full=Ribosome maturation factor rimP gi|34396409|gb|AAQ65476.1| conserved hypothetical protein [Porphyromonas gingivalis W83] Length = 152 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 53/154 (34%), Gaps = 16/154 (10%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 I ++ + V++++ +L+++ + + +C LS+ I +D Sbjct: 5 EQIVRIVSDYLSTGETFLVEVAIHPGNRILVEL---DSAQGVCIDECVALSRHIESQVDR 61 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 + Y LEV S G+ P+ + ++ + K G+++ + Sbjct: 62 D---IEDYELEVGSTGLTSPLKVMRQWENCIDSELSVLLTNGM----KETGRLITVAPEA 114 Query: 143 FFLEK------EKRGEKDMNELQIAISFDSLLSA 170 LE E K ++ I + A Sbjct: 115 IKLEVVRMVKPEGAKRKKPETQELTIVMADIKQA 148 >gi|237785728|ref|YP_002906433.1| hypothetical protein ckrop_1145 [Corynebacterium kroppenstedtii DSM 44385] gi|259585744|sp|C4LJ85|RIMP_CORK4 RecName: Full=Ribosome maturation factor rimP gi|237758640|gb|ACR17890.1| hypothetical protein ckrop_1145 [Corynebacterium kroppenstedtii DSM 44385] Length = 189 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 63/166 (37%), Gaps = 16/166 (9%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 A +I+ +Q ++ ++ + + + I ++ D L EELS IS Sbjct: 6 AEEITQRVQQIVGPRGLDVEKVDIKKAGAKSAVIIRIDGDQRP-DLDVIEELSDEISRNF 64 Query: 81 DVENIIEG-----HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ------ 129 D YRLEVS+PG D P++ F R GH+ + + + Sbjct: 65 DAAESDGELNFGAGYRLEVSTPGFDEPLLAARHFRRQRGHIATFVLNQADDEHATANAAN 124 Query: 130 -KLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + + ++ + L G+K+ + D + A+L V Sbjct: 125 ARFVARVGALNADETELAVVLPGKKEPSVKTY--PLDQIREAKLEV 168 >gi|188994217|ref|YP_001928469.1| hypothetical protein PGN_0353 [Porphyromonas gingivalis ATCC 33277] gi|259586179|sp|B2RHM7|RIMP_PORG3 RecName: Full=Ribosome maturation factor rimP gi|188593897|dbj|BAG32872.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC 33277] Length = 152 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 53/154 (34%), Gaps = 16/154 (10%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 I ++ + V++++ +L+++ + + +C LS+ I +D Sbjct: 5 EQIVRIVSDYLSTGETFLVEVAIHPGNRILVEL---DSAQGVCIDECVALSRHIESQVDR 61 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 + Y LEV S G+ P+ + ++ + K G+++ + Sbjct: 62 DL---EDYELEVGSTGLTSPLKVMRQWENCIDSELSVLLTNGM----KETGRLITVAPEA 114 Query: 143 FFLEK------EKRGEKDMNELQIAISFDSLLSA 170 LE E K ++ I + A Sbjct: 115 IKLEVVRMVKPEGAKRKKPETQELTIVMADIKQA 148 >gi|319951027|ref|ZP_08024891.1| ribosome maturation protein RimP [Dietzia cinnamea P4] gi|319435307|gb|EFV90563.1| ribosome maturation protein RimP [Dietzia cinnamea P4] Length = 181 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 52/154 (33%), Gaps = 12/154 (7%) Query: 32 VIEEMSFRSVQI-SLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHY 90 + + I + I V+ D ++L D +LS + P+ + + Sbjct: 14 AVSDRGLDLEDIREDARSSAWRVTIVVDG-DAGVSLDDLADLSTDLDPLAEGWGGPDRPV 72 Query: 91 RLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKR 150 LEV+S G+D P+ + + R G V V + + + L Sbjct: 73 TLEVTSRGVDAPLEQPRHWRRARGRQVDITYVQGAKGPARARVGDLDEGAGVVRLVSGAG 132 Query: 151 GEKDMNELQIAISFDSLLSA------RLIVTDEL 178 EK + ++ D + A R DEL Sbjct: 133 REKKVEP----VALDQVAHAVIRVEFRPAPQDEL 162 >gi|51599051|ref|YP_073239.1| hypothetical protein BG0825 [Borrelia garinii PBi] gi|81609733|sp|Q65ZX4|RIMP_BORGA RecName: Full=Ribosome maturation factor rimP gi|51573622|gb|AAU07647.1| conserved hypothetical protein [Borrelia garinii PBi] Length = 145 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 64/151 (42%), Gaps = 16/151 (10%) Query: 24 DISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 ++ ++I+ + E ++ ++++ + +QI + D ++ + +L + I +L + Sbjct: 10 EVYNLIKNLTERLNIEILEVNIFRNKNGGKIQIVLYSKDFSLGIDLLTDLHKMI--LLIL 67 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E +E + LE+S+PGIDR + +F + G + + E Sbjct: 68 EASLEYSFTLELSTPGIDRRIKSDREFQIFEGKKIKLMLDN-------------EFEEGF 114 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 K K ++ +S+ + ARL+ Sbjct: 115 ILESKSKSFIFKTESKELNVSYSDVKKARLV 145 >gi|91208390|sp|Q3B1Z6|RIMP_PELLD RecName: Full=Ribosome maturation factor rimP Length = 176 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 66/171 (38%), Gaps = 18/171 (10%) Query: 17 GDMGLAGDISSVIQPVIEE------MSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDC 69 + I ++Q ++E+ V +++ + +++ ++ D + + C Sbjct: 1 MQGSIDSHIEGIVQNILEDSVGTKGEGVYLVAMTVKGSAVHRKIEVILD-ADSGVRIDQC 59 Query: 70 EELSQAISPILDVENIIE----GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSS 125 ++ I L+ + + + L V SPG+ P+V + + R G ++ + Sbjct: 60 SFFARRIRERLEEDEALSGTMGEDFDLVVGSPGLGEPLVLRRQYGRHVGRLLRVWYRDTE 119 Query: 126 GDKQKLIGKIMGTS----ETGFFLEKEKRGEKDMNELQ--IAISFDSLLSA 170 G + ++ G + S L+ + +K E + + D++ A Sbjct: 120 GVEHEVAGHLQAVSLTEGGGSITLKPQTAKKKGRQEETEDMTLELDAVSRA 170 >gi|86742246|ref|YP_482646.1| hypothetical protein Francci3_3565 [Frankia sp. CcI3] gi|123750811|sp|Q2J725|RIMP_FRASC RecName: Full=Ribosome maturation factor rimP gi|86569108|gb|ABD12917.1| protein of unknown function DUF150 [Frankia sp. CcI3] Length = 268 Score = 55.4 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 62/159 (38%), Gaps = 12/159 (7%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 G+ + + + + + F +++ + + V DG + L + S+ S + Sbjct: 41 GVRTALRARLAAGLADAGFDLEDVTVTRAGSRSVVRVVVDRDGGVDLDAVADASRLASEL 100 Query: 80 LDVEN-----IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 LD ++ G Y LEV+SPG++RP+ + R G +V L G+ Sbjct: 101 LDAAETDGQGLVAGPYVLEVTSPGVERPLTEPRHWRRAIGRLVTVRDRDGI----VLAGR 156 Query: 135 IMGTSETGFFLEK---EKRGEKDMNELQIAISFDSLLSA 170 ++ E+G L R + ++F + A Sbjct: 157 VLSADESGADLAVATDPARPGRPPRRRLARVTFAQVARA 195 >gi|227872000|ref|ZP_03990385.1| conserved hypothetical protein [Oribacterium sinus F0268] gi|227842143|gb|EEJ52388.1| conserved hypothetical protein [Oribacterium sinus F0268] Length = 108 Score = 55.0 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 2/78 (2%) Query: 23 GDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFV-ERDDGNMTLRDCEELSQAISPIL 80 + ++ ++ M + ++ E L+ F+ +D+ +MT+ DC +S+ +S L Sbjct: 4 ERTKAYLEEILPGMGYVLDSVTYTIEAGTHYLRAFIFRKDEQDMTVNDCAMVSRRLSKWL 63 Query: 81 DVENIIEGHYRLEVSSPG 98 D E+ I Y LEV S G Sbjct: 64 DKEDFIAEEYILEVCSLG 81 >gi|146299388|ref|YP_001193979.1| hypothetical protein Fjoh_1628 [Flavobacterium johnsoniae UW101] gi|146153806|gb|ABQ04660.1| protein of unknown function DUF150 [Flavobacterium johnsoniae UW101] Length = 166 Score = 55.0 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 72/170 (42%), Gaps = 20/170 (11%) Query: 13 PRIFGDMGLAGDISSVI-QPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 P + M ++ +I + ++E+ S + +++ + + + + + + L+DC + Sbjct: 7 PSFYKIMTFKEKVNELITEALLEKPSIFLIDLAVSDSFKISVGLDGDN---GVALQDCID 63 Query: 72 LSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL 131 +S+AI LD E + LEV+S G+ P+ + + G + +K+ Sbjct: 64 ISRAIENNLDREE---QDFSLEVASVGVGSPLKLIRQYKKNIGRTLIVTTNN-----EKI 115 Query: 132 IGKIMGTSETGFFLEKEKRGEKDMNE------LQIAISFDSLLSARLIVT 175 +++ ++ L + R K + + + I + + A +VT Sbjct: 116 EAELIEANDVFIILSWKAREPKKVGKGKETVQKEQQIPYTEIKEA--VVT 163 >gi|50365107|ref|YP_053532.1| hypothetical protein Mfl291 [Mesoplasma florum L1] gi|81391892|sp|Q6F1H5|RIMP_MESFL RecName: Full=Ribosome maturation factor rimP gi|50363663|gb|AAT75648.1| unknown protein [Mesoplasma florum L1] Length = 164 Score = 55.0 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 23/156 (14%), Positives = 64/156 (41%), Gaps = 6/156 (3%) Query: 20 GLAGDISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVER---DDGNMTLRDCEELSQA 75 + +I + + +++E + + +I+ + ++ +LQI VE + + ++ Sbjct: 6 SIKDEIQKIAESILKEYNLQIYEINNFFDFESDVLQILVEDITEPNKALDFDSIISSNEK 65 Query: 76 ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 +S L+ + Y LEV+S GI++P+ K + ++ + E+ ++ G + Sbjct: 66 LSDALENFPGLSEPYMLEVASAGIEKPIRSKDELVKAVNSYIHVELNQEKNTSSEIEGIL 125 Query: 136 MGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 + + ++ ++ + AR Sbjct: 126 LDFDVNKDTFRIT--YFLKGQKKKVDFKYEQVKFAR 159 >gi|289705160|ref|ZP_06501563.1| conserved hypothetical protein [Micrococcus luteus SK58] gi|289558104|gb|EFD51392.1| conserved hypothetical protein [Micrococcus luteus SK58] Length = 195 Score = 55.0 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 65/179 (36%), Gaps = 23/179 (12%) Query: 1 MESTHFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERD 60 M+ST E R + LA D V+ + ++ +++ ++R Sbjct: 1 MDSTDRRDDLAELRTRVEEALAAD--DVVVEQVRATG---------TAEHRTVEVVLDRA 49 Query: 61 D--GNMTLRDCEELSQAISPILD-----VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWN 113 ++L D LS +S LD V + G Y LEV++ G+DRP+ F R Sbjct: 50 SGTQGLSLDDVARLSGRVSAALDALGDHVPGVGAGEYLLEVTTAGVDRPLTEPRHFARNV 109 Query: 114 GHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 G +V + ++ + L + K + + + + + RL Sbjct: 110 GRLVEVS----VDGAAPVTARLKDVTADDVELAVVRPPAKKGMKAK-ELPAERVALDRL 163 >gi|291460013|ref|ZP_06599403.1| hypothetical protein GCWU000341_02180 [Oribacterium sp. oral taxon 078 str. F0262] gi|291417354|gb|EFE91073.1| hypothetical protein GCWU000341_02180 [Oribacterium sp. oral taxon 078 str. F0262] Length = 98 Score = 54.2 bits (129), Expect = 8e-06, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 3/81 (3%) Query: 21 LAGDISSVI-QPVIEEMSFRSVQISLLEEKN-LLLQIFV-ERDDGNMTLRDCEELSQAIS 77 + + + + + + + +S E L++F+ +D MT DC +S+ +S Sbjct: 2 ITEKTEAYLREELAPSLGYELDSVSYTREDGVNYLRVFILRKDGEPMTTDDCAAVSRPLS 61 Query: 78 PILDVENIIEGHYRLEVSSPG 98 LD E+ IE Y LEV S G Sbjct: 62 RWLDKEDFIEDEYVLEVCSLG 82 >gi|219685672|ref|ZP_03540486.1| conserved hypothetical protein [Borrelia garinii Far04] gi|219672788|gb|EED29813.1| conserved hypothetical protein [Borrelia garinii Far04] Length = 145 Score = 54.2 bits (129), Expect = 8e-06, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 63/151 (41%), Gaps = 16/151 (10%) Query: 24 DISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 ++ ++I+ + E ++ ++++ + +QI + + ++ + +L + I +L + Sbjct: 10 EVYNLIKNLTERLNIEILEVNIFRNKNGGKIQIVLYSKNFSLGIDLLTDLHKII--LLIL 67 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E +E + LE+S+PGIDR + +F + G + + E Sbjct: 68 EASLEYSFTLELSTPGIDRRIKSDREFQIFEGKKIKLMLDN-------------EFEEGF 114 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 K K ++ + + + ARL+ Sbjct: 115 ILESKSKSFIFKTESKELNVFYSDVKKARLV 145 >gi|219684915|ref|ZP_03539856.1| conserved hypothetical protein [Borrelia garinii PBr] gi|219671653|gb|EED28709.1| conserved hypothetical protein [Borrelia garinii PBr] Length = 145 Score = 54.2 bits (129), Expect = 8e-06, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 63/151 (41%), Gaps = 16/151 (10%) Query: 24 DISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 ++ ++I+ + E ++ ++++ + +QI + + ++ + +L + I +L + Sbjct: 10 EVYNLIKNLTERLNIEILEVNIFRNKNGGKIQIVLYSKNFSLGIDLLTDLHKMI--LLIL 67 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E +E + LE+S+PGIDR + +F + G + + E Sbjct: 68 EASLEYSFTLELSTPGIDRRIKSDREFQIFEGKKIKLMLDN-------------EFEEGF 114 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 K K ++ + + + ARL+ Sbjct: 115 ILESKSKSFIFKTESKELNVFYSDVKKARLV 145 >gi|15595144|ref|NP_212933.1| hypothetical protein BB0799 [Borrelia burgdorferi B31] gi|226320844|ref|ZP_03796396.1| conserved hypothetical protein [Borrelia burgdorferi 29805] gi|2688749|gb|AAC67155.1| conserved hypothetical protein [Borrelia burgdorferi B31] gi|226233710|gb|EEH32439.1| conserved hypothetical protein [Borrelia burgdorferi 29805] Length = 162 Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 65/160 (40%), Gaps = 16/160 (10%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELS 73 + ++ ++I+ + ++ ++I+ + N +QI + + ++ + +L Sbjct: 18 LIKYFDKNNEVFNLIKDLTGRLNVEILEINIFRNKNNGKIQIVLYSKNFSLDIDFLTDLH 77 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 + I +L +E ++ + LE+S+PGIDR + +F + G + + Sbjct: 78 KMI--LLILEANLKYGFTLELSTPGIDRKIKSDREFKIFEGKKIKLMLDN---------- 125 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 E K K + ++ + + + ARL+ Sbjct: 126 ---EFEEGFILESKPKSFIFKTDSKEVNVFYSDVKKARLV 162 >gi|167751797|ref|ZP_02423924.1| hypothetical protein ALIPUT_00038 [Alistipes putredinis DSM 17216] gi|167660038|gb|EDS04168.1| hypothetical protein ALIPUT_00038 [Alistipes putredinis DSM 17216] Length = 155 Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 49/154 (31%), Gaps = 16/154 (10%) Query: 24 DISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83 I+ + + V + + L I D ++ + C ELS+AI D + Sbjct: 6 KITEIANAKLVGTDLFVVDCTCSPANEVELLI---DSDTSVGIETCVELSRAIEAEFDRD 62 Query: 84 NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF 143 + L V+S GI + + + G V + K++ + + G Sbjct: 63 ---TEDFSLTVASAGIGSELKHLRQYRKLIGKPVEVLLKSGV----KILATLDEADQEGL 115 Query: 144 FLE------KEKRGEKDMNELQIAISFDSLLSAR 171 L E + K + F + + Sbjct: 116 TLSYEEKQAVEGKKRKQTVRVTRRYPFSEIKYTK 149 >gi|259585818|sp|A5FJF7|RIMP_FLAJ1 RecName: Full=Ribosome maturation factor rimP Length = 154 Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 70/164 (42%), Gaps = 20/164 (12%) Query: 19 MGLAGDISSVI-QPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M ++ +I + ++E+ S + +++ + + + + + + L+DC ++S+AI Sbjct: 1 MTFKEKVNELITEALLEKPSIFLIDLAVSDSFKISVGLDGDN---GVALQDCIDISRAIE 57 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD E + LEV+S G+ P+ + + G + +K+ +++ Sbjct: 58 NNLDREE---QDFSLEVASVGVGSPLKLIRQYKKNIGRTLIVTTNN-----EKIEAELIE 109 Query: 138 TSETGFFLEKEKRGEKDMNE------LQIAISFDSLLSARLIVT 175 ++ L + R K + + + I + + A +VT Sbjct: 110 ANDVFIILSWKAREPKKVGKGKETVQKEQQIPYTEIKEA--VVT 151 >gi|156319550|ref|XP_001618133.1| hypothetical protein NEMVEDRAFT_v1g225486 [Nematostella vectensis] gi|156197569|gb|EDO26033.1| predicted protein [Nematostella vectensis] Length = 271 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 20/146 (13%), Positives = 59/146 (40%), Gaps = 8/146 (5%) Query: 19 MGLAGDISSVI-QPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAIS 77 M + ++ ++E + + + E + + + + ++L+DC ++S+ + Sbjct: 1 MTFKEKVEKLLDAAILERDHLFLIDLKIDEANKINIVLDGDN---GVSLQDCVDISRLVE 57 Query: 78 PILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD E + LEV+S G+ P+ + + G + ++V+ + +++ I Sbjct: 58 QDLDREE---NDFSLEVASAGLSSPLKLVRQYKKNIGRKLKAKVVVEAKEEKPEIIAAPK 114 Query: 138 TS-ETGFFLEKEKRGEKDMNELQIAI 162 + E+ + ++ + Sbjct: 115 LEVTEKVTPKAEEPKVESSTVEKVEV 140 >gi|291513590|emb|CBK62800.1| Uncharacterized protein conserved in bacteria [Alistipes shahii WAL 8301] Length = 155 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 55/156 (35%), Gaps = 16/156 (10%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILD 81 I + +E V+ + + L I D ++ + C ELS+A+ D Sbjct: 4 TKKIIEAAERHLEGSDMFVVECTSTPGNEIELTI---DSDTSVGIDACAELSRAVEAQFD 60 Query: 82 VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + + L V S GI + + + G + K++ K+ ++ Sbjct: 61 RDE---EDFSLTVMSAGIGSELKSLRQYRKLAGKSAEVLLTSGV----KILAKLEEVTDE 113 Query: 142 GFFLE------KEKRGEKDMNELQIAISFDSLLSAR 171 G L E + +K + ++ + FD + + Sbjct: 114 GITLSYEEKQAVEGKKKKQLVKVTRSYPFDQIKYTK 149 >gi|163839409|ref|YP_001623814.1| putative cytoplasmic protein [Renibacterium salmoninarum ATCC 33209] gi|162952885|gb|ABY22400.1| hypothetical cytosolic protein [Renibacterium salmoninarum ATCC 33209] Length = 149 Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 8/122 (6%) Query: 55 IFVERDDG---NMTLRDCEELSQAISPILDVENIIEG-HYRLEVSSPGIDRPMVRKSDFL 110 + V+ + ++ L E+S A+S LD + +G + LEVSSPG+ R + + Sbjct: 3 VVVDLPEDQQGSVGLDKIAEVSLALSSALDADPEDDGRPFDLEVSSPGVGRSLTELRHWR 62 Query: 111 RWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIA---ISFDSL 167 R G + ++ S + L G+I+ S G + E +K M Q I F + Sbjct: 63 RALGRMATLKLRKSEQGE-SLFGRIIEVSPDGVKIRPELPVKKGMKPKQAEPEFIEFAQI 121 Query: 168 LS 169 Sbjct: 122 RK 123 >gi|238783517|ref|ZP_04627539.1| hypothetical protein yberc0001_8610 [Yersinia bercovieri ATCC 43970] gi|238797554|ref|ZP_04641051.1| hypothetical protein ymoll0001_5240 [Yersinia mollaretii ATCC 43969] gi|238715572|gb|EEQ07562.1| hypothetical protein yberc0001_8610 [Yersinia bercovieri ATCC 43970] gi|238718551|gb|EEQ10370.1| hypothetical protein ymoll0001_5240 [Yersinia mollaretii ATCC 43969] Length = 66 Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 10/72 (13%), Positives = 25/72 (34%), Gaps = 8/72 (11%) Query: 103 MVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAI 162 M + R+ G V + ++ +++K G I + + + E Sbjct: 1 MFTAEHYTRYLGEEVTLVLRMAMQNRRKWQGIIKAVDGEMITVTVDGKDEV--------F 52 Query: 163 SFDSLLSARLIV 174 + ++ A L+ Sbjct: 53 ALSNIQKANLVP 64 >gi|195941990|ref|ZP_03087372.1| hypothetical protein Bbur8_03844 [Borrelia burgdorferi 80a] gi|221217609|ref|ZP_03589078.1| conserved hypothetical protein [Borrelia burgdorferi 72a] gi|223889333|ref|ZP_03623920.1| conserved hypothetical protein [Borrelia burgdorferi 64b] gi|224533432|ref|ZP_03674025.1| conserved hypothetical protein [Borrelia burgdorferi CA-11.2a] gi|225549379|ref|ZP_03770351.1| conserved hypothetical protein [Borrelia burgdorferi 94a] gi|225550239|ref|ZP_03771198.1| conserved hypothetical protein [Borrelia burgdorferi 118a] gi|259016310|sp|O51739|RIMP_BORBU RecName: Full=Ribosome maturation factor rimP gi|221192555|gb|EEE18773.1| conserved hypothetical protein [Borrelia burgdorferi 72a] gi|223885254|gb|EEF56357.1| conserved hypothetical protein [Borrelia burgdorferi 64b] gi|224513394|gb|EEF83752.1| conserved hypothetical protein [Borrelia burgdorferi CA-11.2a] gi|225369107|gb|EEG98561.1| conserved hypothetical protein [Borrelia burgdorferi 118a] gi|225370007|gb|EEG99448.1| conserved hypothetical protein [Borrelia burgdorferi 94a] gi|312149294|gb|ADQ29365.1| conserved hypothetical protein [Borrelia burgdorferi N40] Length = 145 Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 64/151 (42%), Gaps = 16/151 (10%) Query: 24 DISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 ++ ++I+ + ++ ++I+ + N +QI + + ++ + +L + I +L + Sbjct: 10 EVFNLIKDLTGRLNVEILEINIFRNKNNGKIQIVLYSKNFSLDIDFLTDLHKMI--LLIL 67 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E ++ + LE+S+PGIDR + +F + G + + E Sbjct: 68 EANLKYGFTLELSTPGIDRKIKSDREFKIFEGKKIKLMLDN-------------EFEEGF 114 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 K K + ++ + + + ARL+ Sbjct: 115 ILESKPKSFIFKTDSKEVNVFYSDVKKARLV 145 >gi|216264912|ref|ZP_03436904.1| conserved hypothetical protein [Borrelia burgdorferi 156a] gi|218249670|ref|YP_002375298.1| hypothetical protein BbuZS7_0829 [Borrelia burgdorferi ZS7] gi|224532422|ref|ZP_03673050.1| conserved hypothetical protein [Borrelia burgdorferi WI91-23] gi|226321264|ref|ZP_03796792.1| conserved hypothetical protein [Borrelia burgdorferi Bol26] gi|226708090|sp|B7J0P5|RIMP_BORBZ RecName: Full=Ribosome maturation factor rimP gi|215981385|gb|EEC22192.1| conserved hypothetical protein [Borrelia burgdorferi 156a] gi|218164858|gb|ACK74919.1| conserved hypothetical protein [Borrelia burgdorferi ZS7] gi|224512645|gb|EEF83018.1| conserved hypothetical protein [Borrelia burgdorferi WI91-23] gi|226233296|gb|EEH32047.1| conserved hypothetical protein [Borrelia burgdorferi Bol26] Length = 145 Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 64/151 (42%), Gaps = 16/151 (10%) Query: 24 DISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 ++ ++I+ + ++ ++I+ + N +QI + + ++ + +L + I +L + Sbjct: 10 EVFNLIKDLTGRLNVEILEINIFRNKNNGKIQIVLYSKNFSLDIDFLTDLHKII--LLIL 67 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E ++ + LE+S+PGIDR + +F + G + + E Sbjct: 68 EANLKYGFTLELSTPGIDRKIKSDREFKIFEGKKIKLMLDN-------------EFEEGF 114 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 K K + ++ + + + ARL+ Sbjct: 115 ILESKPKSFIFKTDSKEVNVFYSDVKKARLV 145 >gi|296117672|ref|ZP_06836256.1| conserved hypothetical protein [Corynebacterium ammoniagenes DSM 20306] gi|295969403|gb|EFG82644.1| conserved hypothetical protein [Corynebacterium ammoniagenes DSM 20306] Length = 179 Score = 51.9 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 56/151 (37%), Gaps = 10/151 (6%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + P++ + QI + K + I ++ + + EE+S+ I Sbjct: 6 EQKLEDFLTPILAKHDLDVEQIKTTKAGKKSQVVIRIDGEKRP-SSDVLEEMSRTIGDAF 64 Query: 81 DV-----ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD---KQKLI 132 D E Y LEVS+PG+D P+ F R G + + + + Sbjct: 65 DAAEEAGELNFGAGYTLEVSTPGVDLPLTAPRHFRRNRGRKIKSSLGEVRIGALSEDEQN 124 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAIS 163 ++ ++ ++ ++ + ++I + Sbjct: 125 VIVVTSARDIAKVQVQRLENLVGSVVEIEFA 155 >gi|260905193|ref|ZP_05913515.1| putative uncharacterized Bcr YhbC family protein [Brevibacterium linens BL2] Length = 154 Score = 51.9 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 54/157 (34%), Gaps = 16/157 (10%) Query: 23 GDISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDD---GNMTLRDCEELSQAISP 78 I +++ ++ F + + + L + V+ D+ M++ E S+ + Sbjct: 6 AQIEELLREPLQASGFYLESVKAVAAGQRRALTVVVDLDESSTEPMSMDKIAESSRLVGD 65 Query: 79 ILDVENIIEG-HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 LD + Y+LEV+SPG R + F R G + K + Sbjct: 66 TLDEVEVFRDKPYQLEVTSPGATRKLEAPRHFKRVLGRRLEISTK-----KDTFKLDLDD 120 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + G + + + ++ A++ + Sbjct: 121 VGDHSIS------GIDPASREKRTVKLGDIVKAQVEL 151 >gi|194333209|ref|YP_002015069.1| hypothetical protein Paes_0365 [Prosthecochloris aestuarii DSM 271] gi|259586180|sp|B4S4S4|RIMP_PROA2 RecName: Full=Ribosome maturation factor rimP gi|194311027|gb|ACF45422.1| protein of unknown function DUF150 [Prosthecochloris aestuarii DSM 271] Length = 179 Score = 51.9 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 71/174 (40%), Gaps = 18/174 (10%) Query: 12 EPRIFGDMGLAGDISSVIQPVIEEMSFR--SVQISLLEEKNLL-LQIFVERDDGNMTLRD 68 E R+ G+ ++S + V V +++ + +++ V+ + + + Sbjct: 3 EDRLI--SGIEACVASFSREVSTGKESEIFLVDLAVKAAGRSVKIEVLVDS-EQGIVISQ 59 Query: 69 CEELSQAISPILDVENIIEGHY----RLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLS 124 C LS+ I +++ ++ ++ Y L VSSPG+ P+ ++R G +++ Sbjct: 60 CAALSRRIRDMIESDDELQEVYGEVFELMVSSPGLGGPIRHVRQYIRHTGRLLSVRYRDD 119 Query: 125 SGDKQKLIGKIMGTS-----ETGFFLEKEKRGEKDMN---ELQIAISFDSLLSA 170 +G + G+++ E LE + G K ++ + D + A Sbjct: 120 AGSVHDVTGRLIEVDLAEGHEPFLVLEPVRSGRKKNGSLPPSRLKMMLDRIDKA 173 >gi|216263349|ref|ZP_03435344.1| conserved hypothetical protein [Borrelia afzelii ACA-1] gi|215980193|gb|EEC21014.1| conserved hypothetical protein [Borrelia afzelii ACA-1] Length = 145 Score = 51.9 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 64/151 (42%), Gaps = 16/151 (10%) Query: 24 DISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 ++ ++I+ + E ++ ++I+ + +QI + + ++ + +L + I +L + Sbjct: 10 EVYNLIKNLTERLNVEILEINIFRNKNGGKIQIVLYSKNFSLGIDLMTDLHKMI--LLIL 67 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E ++ + LE+S+PGIDR + +F + G + + E Sbjct: 68 EANLKYSFILELSTPGIDRKIKSDKEFQIFEGKKIKLMLDN-------------EFEEGF 114 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 K K + ++ + + + ARL+ Sbjct: 115 ILEAKSKSFIFKTDNKELNVFYSDVKKARLV 145 >gi|224534153|ref|ZP_03674733.1| conserved hypothetical protein [Borrelia spielmanii A14S] gi|224514578|gb|EEF84892.1| conserved hypothetical protein [Borrelia spielmanii A14S] Length = 145 Score = 51.9 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 63/151 (41%), Gaps = 16/151 (10%) Query: 24 DISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 ++ ++I+ + E ++ ++I+ + +QI + + ++ + +L + I +L + Sbjct: 10 EVYNLIKNLTERLNVEILEINIFRNKNGGKIQIVLYSKNFSLGVDLMTDLHKMI--LLIL 67 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E + + LE+S+PGIDR + +F + G + + E Sbjct: 68 EANFKYSFTLELSTPGIDRRIKSDREFQIFEGKKIKLMLDN-------------EFEEGF 114 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 K K + ++ + + + ARL+ Sbjct: 115 ILKSKSKSFIFKTDSKELNVFYSDVKKARLV 145 >gi|323342030|ref|ZP_08082263.1| hypothetical protein HMPREF0357_10443 [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464455|gb|EFY09648.1| hypothetical protein HMPREF0357_10443 [Erysipelothrix rhusiopathiae ATCC 19414] Length = 143 Score = 51.9 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 53/152 (34%), Gaps = 12/152 (7%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 I+P E + + L+ + L L I +D + L C + +A LD Sbjct: 2 EKYLEKIKPTAEALGLDIIDAELISNELLELSI-ARKDFKPVDLEICAKAGEAFGEALDY 60 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E L+V S G +R + + D+ V + + G ++ E Sbjct: 61 E------IGLDVGSAGAERVI-LEEDYDNVVDQYVLIKFKNPIQGADYVEGTVISVDENE 113 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 + ++ +IAI ++ RL V Sbjct: 114 VVVSYRQKTALK----KIAIERLNIKMLRLAV 141 >gi|225551682|ref|ZP_03772626.1| conserved hypothetical protein [Borrelia sp. SV1] gi|225371709|gb|EEH01135.1| conserved hypothetical protein [Borrelia sp. SV1] Length = 145 Score = 51.5 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 64/151 (42%), Gaps = 16/151 (10%) Query: 24 DISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 ++ ++I+ + ++ ++I+ + N ++I + + ++ + +L + I +L + Sbjct: 10 EVFNLIKDLTGRLNVEILEINIFRNKNNGKIKIVLYSKNFSLDIDFLTDLHKII--LLIL 67 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E ++ + LE+S+PGIDR + +F + G + + E Sbjct: 68 EANLKYGFTLELSTPGIDRKIKSDREFKIFEGKKIKLMLDN-------------EFEEGF 114 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 K K + ++ + + + ARL+ Sbjct: 115 ILESKPKSFIFKTDSKEVNVFYSDVKKARLV 145 >gi|260578922|ref|ZP_05846825.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC 43734] gi|258602896|gb|EEW16170.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC 43734] Length = 191 Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 58/158 (36%), Gaps = 22/158 (13%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGN---MTLRDCEELSQAIS 77 + ++ ++ E I + + ++I V+ D L EELS+ +S Sbjct: 8 KEQLEDSLRGLVNEFGLLIEGIKITKAGAKSAIRIAVDTADPRAERPDLDQLEELSREVS 67 Query: 78 PILDV-----ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 LD E Y LE+++PG+D P+V + ++R G +V + Sbjct: 68 KHLDDAEASGEMSFGAGYTLELTTPGVDFPLVEQRHWVRNIGRLVR--LADGVE------ 119 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 +I L + + + ++ F + A Sbjct: 120 -RIAQVEGEDVVLITPDKKQPSVRRVR----FADVAGA 152 >gi|111115634|ref|YP_710252.1| hypothetical protein BAPKO_0852 [Borrelia afzelii PKo] gi|122956310|sp|Q0SM52|RIMP_BORAP RecName: Full=Ribosome maturation factor rimP gi|110890908|gb|ABH02076.1| hypothetical protein BAPKO_0852 [Borrelia afzelii PKo] Length = 145 Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 64/151 (42%), Gaps = 16/151 (10%) Query: 24 DISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 ++ ++I+ + E ++ ++I+ + +QI + + ++ + +L + I +L + Sbjct: 10 EVYNLIKNLTERLNVEILEINIFRNKNGGKIQIVLYSKNFSLGIDLMTDLHKMI--LLIL 67 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E ++ + LE+S+PGIDR + +F + G + + E Sbjct: 68 EANLKYSFILELSTPGIDRRIKSDKEFQIFEGKKIKLMLDN-------------EFEEGF 114 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 K K + ++ + + + ARL+ Sbjct: 115 ILEAKSKSFIFKTDSKELNVFYSDVKKARLV 145 >gi|332830403|gb|EGK03031.1| hypothetical protein HMPREF9455_01281 [Dysgonomonas gadei ATCC BAA-286] Length = 155 Score = 50.8 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 59/153 (38%), Gaps = 16/153 (10%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 I V ++E V +++ ++++ D ++ + DC LS+ I LD E Sbjct: 7 IKDVADKFLQETPMFLVDVTVRPGNIIVVE---IDSDDSIGIDDCIALSRDIESRLDRE- 62 Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFF 144 + LEV S G+ P + + G+ V QKL G + + GF Sbjct: 63 --AEDFELEVGSAGVTSPFKIPRQYKKNEGNEVEVLTKAG----QKLSGVLKTSDNNGFV 116 Query: 145 LEK------EKRGEKDMNELQIAISFDSLLSAR 171 + E +K E ++ ++D + + Sbjct: 117 ITITKMVKPEGAKKKTALEEDLSFAYDEVKYTK 149 >gi|194335548|ref|YP_002017342.1| protein of unknown function DUF150 [Pelodictyon phaeoclathratiforme BU-1] gi|259586174|sp|B4SCE5|RIMP_PELPB RecName: Full=Ribosome maturation factor rimP gi|194308025|gb|ACF42725.1| protein of unknown function DUF150 [Pelodictyon phaeoclathratiforme BU-1] Length = 173 Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 59/130 (45%), Gaps = 12/130 (9%) Query: 21 LAGDISSVIQPVIEE------MSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELS 73 + I++ + V+ E + I + ++I ++ DD + + C +S Sbjct: 1 MQERINNCVTQVLAESAGTRGEGAYLIDIKVKGKGSGRKIEILMDADD-GIRIHQCAYIS 59 Query: 74 QAISPILDVEN----IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ 129 + + ++ ++ ++ ++ L VSSPG+ P++ ++R G ++ S+GD Sbjct: 60 RRVRERIEGDDDLLELVGENFDLMVSSPGLGEPIIIPRQYIRHVGKLLQVTYADSNGDPV 119 Query: 130 KLIGKIMGTS 139 +L+G + S Sbjct: 120 ELVGHLQEVS 129 >gi|68536222|ref|YP_250927.1| hypothetical protein jk1145 [Corynebacterium jeikeium K411] gi|91208000|sp|Q4JV48|RIMP_CORJK RecName: Full=Ribosome maturation factor rimP gi|68263821|emb|CAI37309.1| conserved hypothetical protein [Corynebacterium jeikeium K411] Length = 191 Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 58/158 (36%), Gaps = 22/158 (13%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGN---MTLRDCEELSQAIS 77 + ++ ++ E I + + ++I V+ D L EELS+ +S Sbjct: 8 KEQLEDSLRGLVNEFGLLIEGIKITKAGAKSAIRIAVDTADPRAERPDLDQLEELSREVS 67 Query: 78 PILDV-----ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLI 132 LD E Y LE+++PG+D P+V + ++R G +V + Sbjct: 68 KHLDDAEAAGEMSFGAGYTLELTTPGVDFPLVEQRHWVRNIGRLVRLAGGVE-------- 119 Query: 133 GKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 +I L + + + ++ F + A Sbjct: 120 -RIAQVEGEDVVLITPDKKQPSVRRVR----FADVAGA 152 >gi|224531664|ref|ZP_03672296.1| conserved hypothetical protein [Borrelia valaisiana VS116] gi|224511129|gb|EEF81535.1| conserved hypothetical protein [Borrelia valaisiana VS116] Length = 145 Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 24/160 (15%), Positives = 65/160 (40%), Gaps = 16/160 (10%) Query: 15 IFGDMGLAGDISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELS 73 + ++ ++I+ + E + ++I+ + + +QI + + ++ + +L Sbjct: 1 MIEHFDKNNEVYNLIKNLTERANIEILEINVFKNKNSGKIQIVLYSKNFSLGIDLLTDLH 60 Query: 74 QAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIG 133 + I +L +E ++ + LE+S+PGI+R + +F + G + + Sbjct: 61 KMI--LLILEANLKYSFTLELSTPGINRKIKSDKEFQIFEGKKIKLMLDN---------- 108 Query: 134 KIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 E K K + ++ + + + ARL+ Sbjct: 109 ---EFEEGLILKSKSKSFIFKTDSKELNVFYSDVKKARLV 145 >gi|240146077|ref|ZP_04744678.1| conserved hypothetical protein [Roseburia intestinalis L1-82] gi|257201822|gb|EEV00107.1| conserved hypothetical protein [Roseburia intestinalis L1-82] Length = 76 Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 7/82 (8%) Query: 94 VSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEK 153 VSSPG+ RP+ ++ D++R G V + +++ G + E ++ E Sbjct: 1 VSSPGLGRPLKKEKDYIRSMGKEVEIRTYRAINREKEFYGILSAYDENTVTIKTED---- 56 Query: 154 DMNELQIAISFDSLLSARLIVT 175 ++ + RL Sbjct: 57 ---GTEMTFEKSDIALIRLAFD 75 >gi|289810679|ref|ZP_06541308.1| hypothetical protein Salmonellaentericaenterica_42532 [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 63 Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 25/68 (36%), Gaps = 8/68 (11%) Query: 107 SDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDS 166 + R+ G VA + ++ +++K G I + E + E + + Sbjct: 2 DHYARFQGEEVALVLRMAVQNRRKWQGIIKAVDGEMITVTVEGKDEV--------FALSN 53 Query: 167 LLSARLIV 174 + A L+ Sbjct: 54 IQKANLVP 61 >gi|110597608|ref|ZP_01385893.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031] gi|110340728|gb|EAT59205.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031] Length = 173 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 25/168 (14%), Positives = 65/168 (38%), Gaps = 15/168 (8%) Query: 17 GDMGLAGDISSVIQPVI--EEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELS 73 + + +I V + + ++ ++I V+ DD + + C LS Sbjct: 1 MQERIRSSVLQIIDGSAGTRGEGAYLVDLKVKGPQRARKIEILVD-DDSGVRIDQCAWLS 59 Query: 74 QA----ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQ 129 + + ++ ++ + + VSSPG+ P++ ++R G ++ ++ Sbjct: 60 RRLRELLESDEELLALVGEDFEITVSSPGLGEPLMLHRQYVRHCGKIMEVTYTDEDAVQR 119 Query: 130 KLIGKIMGTSETG-----FFLEKEKRGEKDMNE--LQIAISFDSLLSA 170 +L G+++ S + + EK +K ++ + D + A Sbjct: 120 ELKGRLLRVSLSEESRPHIVIMPEKNRKKGSTPNREEVTLYLDQVNRA 167 >gi|111225122|ref|YP_715916.1| hypothetical protein FRAAL5763 [Frankia alni ACN14a] gi|111152654|emb|CAJ64395.1| Hypothetical protein FRAAL5763 [Frankia alni ACN14a] Length = 197 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 12/118 (10%) Query: 61 DGNMTLRDCEELSQAISPILDV-----ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGH 115 DG + L E S+ +S +LD E + G Y LEV+SPG+DRP+ + R G Sbjct: 4 DGGIDLDAVAEASRVVSDLLDAAEAAGEGLSAGPYVLEVTSPGVDRPLTAPRHWRRAVGR 63 Query: 116 VVACEIVLSSGDKQKLIGKIMGTSETGFFLEK---EKRGEKDMNELQIAISFDSLLSA 170 +V + L G+++ E G L R + +++ + A Sbjct: 64 LVTVRDSAG----EVLSGRVLSADEAGADLAVATGPARRGRPQRRRVARVTYAQVERA 117 >gi|187918653|ref|YP_001884219.1| hypothetical protein BH0799 [Borrelia hermsii DAH] gi|226708085|sp|B2S1E3|RIMP_BORHD RecName: Full=Ribosome maturation factor rimP gi|119861501|gb|AAX17296.1| hypothetical cytosolic protein [Borrelia hermsii DAH] Length = 143 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 67/150 (44%), Gaps = 17/150 (11%) Query: 24 DISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 ++ ++I+ V + + ++I+ + +QI + + D C +L + I +L++ Sbjct: 9 EVYNLIKNVTDRLGIEIIEINTFRKRGEGRVQIVLYKGDDFGVDTLC-DLHKMI--LLNL 65 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E +++ ++ LE+S+PGI+R + +F + G + + G I+ Sbjct: 66 EAVLKYNFSLEISTPGINRKIKSDREFKIFEGKKIKLMLDNDFE-----EGFILKAGADS 120 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARL 172 F + + + ++ + + + A+L Sbjct: 121 FIFKTDNK--------EVKVLYSDVKKAKL 142 >gi|172040526|ref|YP_001800241.1| hypothetical protein cur_0847 [Corynebacterium urealyticum DSM 7109] gi|226708097|sp|B1VGB7|RIMP_CORU7 RecName: Full=Ribosome maturation factor rimP gi|171851830|emb|CAQ04806.1| conserved hypothetical protein [Corynebacterium urealyticum DSM 7109] Length = 196 Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 45/135 (33%), Gaps = 15/135 (11%) Query: 17 GDMGLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQA 75 L + ++ + +++ ++I V+ D+ L EE SQ Sbjct: 1 MATPLDEKLRALAADEAMKCGLDVEKLTFTRAGAKSSVKIAVDADERP-DLDLLEEASQL 59 Query: 76 ISPILDVENIIEG-----HYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQK 130 I D + Y LEV++PG+D P+ +F R G + G Sbjct: 60 IGAAFDAAEEAQQIDLGPSYTLEVTTPGLDFPLREARNFQRNIGRLANL----PGGG--- 112 Query: 131 LIGKIMGTSETGFFL 145 G+I + Sbjct: 113 -KGRIAAVENDEVAI 126 >gi|296125434|ref|YP_003632686.1| hypothetical protein Bmur_0384 [Brachyspira murdochii DSM 12563] gi|296017250|gb|ADG70487.1| conserved hypothetical protein [Brachyspira murdochii DSM 12563] Length = 188 Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 21/145 (14%), Positives = 50/145 (34%), Gaps = 5/145 (3%) Query: 29 IQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 I+ ++E+ + + + N + + + +++ C E ++ I + E Sbjct: 46 IKDILEKDGIYLLDLKVRAISDNKKVYAVIYKKKESVSHTHCIETTRKIQECIKQNGYDE 105 Query: 88 GHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEK 147 G Y + VSS G + + G + + ++ + + Sbjct: 106 GDYTITVSSAGFRWKF--NDRYELFEGMPIKIKYRDGEQFITSY-AELKEAEDDYIIINV 162 Query: 148 EKRGEKDMNELQIAISFDSLLSARL 172 +NE I I + ++ ARL Sbjct: 163 LDED-NIINEKNIKILKNDIIKARL 186 >gi|119953576|ref|YP_945786.1| hypothetical protein BT0799 [Borrelia turicatae 91E135] gi|254806615|sp|A1R0M4|RIMP_BORT9 RecName: Full=Ribosome maturation factor rimP gi|119862347|gb|AAX18115.1| hypothetical cytosolic protein [Borrelia turicatae 91E135] Length = 143 Score = 47.7 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 68/150 (45%), Gaps = 17/150 (11%) Query: 24 DISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 ++ ++I+ V +++ ++I+ + +QI + + + C +L + I +L + Sbjct: 9 EVYNLIKNVTDQLGIEIIEINTFKKRDEGRIQIVLYKGNDFGVDTLC-DLHKMI--LLSL 65 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E +++ ++ LE+S+PGI+R + +F + G + + G I+ G Sbjct: 66 EVVLKYNFSLEISTPGINRKIKSDREFKIFEGRKIKLMLDNDFE-----EGLILKAEADG 120 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARL 172 F + + + +I I + + A+L Sbjct: 121 FIFKTDTK--------EIRILYSDVKKAKL 142 >gi|300871261|ref|YP_003786134.1| hypothetical protein BP951000_1652 [Brachyspira pilosicoli 95/1000] gi|300688962|gb|ADK31633.1| hypothetical protein BP951000_1652 [Brachyspira pilosicoli 95/1000] Length = 182 Score = 47.7 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 19/152 (12%), Positives = 55/152 (36%), Gaps = 9/152 (5%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLEEK-NLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + +IE+ + + + +L K N + + + +++ C E ++ I ++ Sbjct: 37 QELLFENAKKLIEKHNIYLLDLKVLAVKDNKKVYAVIFKKKESVSHNHCIEATRVIQEVI 96 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 EG Y + VSS G ++ + + + + + + + Sbjct: 97 KNNGYDEGDYTITVSSAGFRWKF--DDNYELFEDMPIKIKYKVDDDNYITTTAILKEAKD 154 Query: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ++ + + + I I +++ RL Sbjct: 155 DYIIIKNDD------DNIDIKILKSNIIKTRL 180 >gi|256384402|gb|ACU78972.1| conserved hypothetical protein [Mycoplasma mycoides subsp. capri str. GM12] gi|256385234|gb|ACU79803.1| conserved hypothetical protein [Mycoplasma mycoides subsp. capri str. GM12] gi|296455490|gb|ADH21725.1| conserved hypothetical protein [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 164 Score = 47.7 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 21/157 (13%), Positives = 56/157 (35%), Gaps = 6/157 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQI----SLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 L I+ ++ +E ++ + QI + +L + + + + + Sbjct: 5 ESLKFQINELVNKELEVLNLKVYQINNLKEFENDMIQILVEDALQANKPLDFDILIKAND 64 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 +S +D Y LE+SS GI++ + + + L+ V ++ + ++ G Sbjct: 65 LVSNKIDQIIKTNQKYLLEISSSGIEKQIRNQEELLKALEQWVYVQLNNETKKVKEFEGY 124 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 + ++ + + + FD + R Sbjct: 125 VTKYNDQTNTFTF--SFFIKGQKKNLDVKFDDIKFIR 159 >gi|300780962|ref|ZP_07090816.1| conserved hypothetical protein [Corynebacterium genitalium ATCC 33030] gi|300532669|gb|EFK53730.1| conserved hypothetical protein [Corynebacterium genitalium ATCC 33030] Length = 196 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 50/153 (32%), Gaps = 13/153 (8%) Query: 23 GDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 ++ +I+PV + + ++ + D TL EE+S +S + D Sbjct: 10 EELKELIRPVTDARGLDIEAVRTVKAGKKSQVVVALAADEAPTLDQLEEVSGELSELFDA 69 Query: 83 ENI-----IEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 Y LEV++PG+D P+ + + R G V G +G + Sbjct: 70 AEAAGTVNFGAGYTLEVTTPGVDLPLTQPRHWRRNRGRRVKL------GGDIYRVGPLDD 123 Query: 138 TSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 E + +K + A Sbjct: 124 AEENVALIS--PAAKKSDEPGVRVAPISDVSGA 154 >gi|42560897|ref|NP_975348.1| hypothetical protein MSC_0353 [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|331703355|ref|YP_004400042.1| hypothetical protein MLC_3350 [Mycoplasma mycoides subsp. capri LC str. 95010] gi|51316641|sp|Q6MTP6|RIMP_MYCMS RecName: Full=Ribosome maturation factor rimP gi|42492394|emb|CAE76990.1| conserved hypothetical protein [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301320615|gb|ADK69258.1| conserved hypothetical protein [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] gi|328801910|emb|CBW54063.1| Conserved hypothetical protein [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 164 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 64/157 (40%), Gaps = 6/157 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERD---DGNMTLRDCEELSQ 74 L I+ ++ +E ++ + QI+ L+E +N ++QI VE + + + + Sbjct: 5 ESLKFQINELVNKELEVLNLKVYQINNLKEFENDMIQILVEDSLQANKPLDFDILIKAND 64 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 +S +D + Y LE+SS GI++ + + + L+ V ++ ++ G Sbjct: 65 LVSNKIDQLIKTKDKYLLEISSSGIEKQIRSQEELLKALEQWVYVQLNNEIKKVKEFEGY 124 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 + ++ + + + FD + R Sbjct: 125 VTKYNDQTNTFTF--SFFIKGQKKNLDVKFDDIKFIR 159 >gi|83319689|ref|YP_424321.1| hypothetical protein MCAP_0337 [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|91208351|sp|Q2SSE2|RIMP_MYCCT RecName: Full=Ribosome maturation factor rimP gi|83283575|gb|ABC01507.1| conserved hypothetical protein [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 164 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 16/157 (10%), Positives = 55/157 (35%), Gaps = 6/157 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQI----SLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + I+ ++ +E ++ + +I + +L + + + + + Sbjct: 5 ESIKFQINELVNKELEVLNLKVYEINNLKEFENDMIQILVEDALQANKPLDFDILIKAND 64 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 +S +D Y LE+SS GI++ + + + ++ V ++ ++ G Sbjct: 65 LVSNKIDQIIKTNQKYLLEISSSGIEKQIRSQEELIKALDQWVYVQLNNEIKKVKEFEGY 124 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 + + + + + ++++ R Sbjct: 125 VTKYNNDTNTFSF--LFFIKGQKKTLEVMWNNIKFIR 159 >gi|213421301|ref|ZP_03354367.1| hypothetical protein Salmonentericaenterica_27659 [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 58 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 8/64 (12%) Query: 111 RWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSA 170 R+ G VA + ++ +++K G I + E + E + ++ A Sbjct: 1 RFQGEEVALVLRMAVQNRRKWQGIIKAVDGEMITVTVEGKDEV--------FALSNIQKA 52 Query: 171 RLIV 174 L+ Sbjct: 53 NLVP 56 >gi|313665235|ref|YP_004047106.1| hypothetical protein MSB_A0351 [Mycoplasma leachii PG50] gi|312949483|gb|ADR24079.1| conserved hypothetical protein [Mycoplasma leachii PG50] Length = 164 Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 16/157 (10%), Positives = 54/157 (34%), Gaps = 6/157 (3%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQI----SLLEEKNLLLQIFVERDDGNMTLRDCEELSQ 74 + I+ ++ +E ++ + +I + +L + + + + + Sbjct: 5 ESIKFQINELVNKELEVLNLKVYEINNLKEFENDMIQILVEDALQANKPLDFDILIKAND 64 Query: 75 AISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGK 134 +S +D Y LE+SS GI++ + + + ++ V ++ ++ G Sbjct: 65 LVSNKIDQIIKTNQKYLLEISSSGIEKQIRSQEELIKALDQWVYVQLNNEIKKVKEFEGY 124 Query: 135 IMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171 + + + + + + ++ R Sbjct: 125 LTKYNNDTDTFSF--LFFIKGQKKTLDVMWKNIKFIR 159 >gi|4455675|emb|CAB36567.1| hypothetical protein MLCB596.11 [Mycobacterium leprae] Length = 122 Score = 44.6 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Query: 55 IFVERDDGNMTLRDC-EELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWN 113 I V D + RD LS ++S +LD + I Y LEVSS G+ RP + F R Sbjct: 12 ITVLADGDTVLARDIIATLSHSVSALLDGLDNIVDRYFLEVSSLGMGRPFTSEKHFRRAR 71 Query: 114 GHVVAC 119 G V Sbjct: 72 GRKVEL 77 >gi|15639878|ref|NP_219328.1| hypothetical protein TP0893 [Treponema pallidum subsp. pallidum str. Nichols] gi|189026116|ref|YP_001933888.1| hypothetical protein TPASS_0893 [Treponema pallidum subsp. pallidum SS14] gi|51316577|sp|O83863|RIMP_TREPA RecName: Full=Ribosome maturation factor rimP gi|3323211|gb|AAC65850.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum str. Nichols] gi|189018691|gb|ACD71309.1| hypothetical protein TPASS_0893 [Treponema pallidum subsp. pallidum SS14] gi|291060252|gb|ADD72987.1| hypothetcal protein [Treponema pallidum subsp. pallidum str. Chicago] Length = 156 Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 47/153 (30%), Gaps = 27/153 (17%) Query: 30 QPVIEEMSFRSVQISLL----------EEKNLLLQIFVERDDGNMTLRDCEELSQAISPI 79 V+ + V + + I+ G +TL C + + + P Sbjct: 15 AEVVRSLGCALVDLQWSVSAVSRRVQQAQGRARAVIY---SAGGVTLDVCARVHRILVPR 71 Query: 80 LDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTS 139 L LEV SPG +R + ++F + G V +G + Sbjct: 72 LQALG-GVRTVFLEVGSPG-ERVIRNAAEFSIFLGETVKVWFCTGQF----QVGTLAFAD 125 Query: 140 ETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 ET L + + I + L A+L Sbjct: 126 ETCLTLT--------AGGVPVTIPYVQLTKAQL 150 >gi|81428863|ref|YP_395863.1| hypothetical protein LSA1252 [Lactobacillus sakei subsp. sakei 23K] gi|78610505|emb|CAI55556.1| Hypotehtical protein [Lactobacillus sakei subsp. sakei 23K] Length = 70 Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 9/71 (12%), Positives = 25/71 (35%), Gaps = 4/71 (5%) Query: 103 MVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAI 162 M +++DF G + + + ++ G + + L + + ++ Sbjct: 1 MKKEADFQNALGEYIHISLYQAVDGEKIYQGILKALDQETLTLAI----KIKTRQKEVTF 56 Query: 163 SFDSLLSARLI 173 + + ARL Sbjct: 57 NRKEIAKARLA 67 >gi|126654114|ref|ZP_01725932.1| hypothetical protein BB14905_22743 [Bacillus sp. B14905] gi|126589394|gb|EAZ83544.1| hypothetical protein BB14905_22743 [Bacillus sp. B14905] Length = 44 Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERD 60 + I + +P+++E++ V I ++E L+++V+ Sbjct: 2 SKVPSLIEELAKPIVDELNLELVDIEFVKEGRNWFLRVYVDTP 44 >gi|303283206|ref|XP_003060894.1| predicted protein [Micromonas pusilla CCMP1545] gi|226457245|gb|EEH54544.1| predicted protein [Micromonas pusilla CCMP1545] Length = 332 Score = 42.3 bits (98), Expect = 0.033, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 49/154 (31%), Gaps = 20/154 (12%) Query: 38 FRSVQISLLEEKNL-LLQIFVERDDGN-MTLRDCEELSQAISPILDVENIIEGHYRLEVS 95 + E+ + +D TL E+S+ + +L+ EN LEV+ Sbjct: 176 LEIYSFKVSVERRRVYASVDAVKDKFGSPTLDQLGEVSRKFNALLEEEN-FPEDVALEVA 234 Query: 96 SPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKL-----------------IGKIMGT 138 SPG +R + D R+ + ++ D K+ Sbjct: 235 SPGAERALRLPDDLPRFRNLTMKVTYAAAAEDDGAEGTRTRVMDVVDVDGDAVEFKLADV 294 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 E +K + K E ++ I + A L Sbjct: 295 PENRPQAKKGQGMNKKQREWRLKIPIADVAKANL 328 >gi|203284695|ref|YP_002222435.1| hypothetical protein BDU_807 [Borrelia duttonii Ly] gi|259585730|sp|B5RMZ3|RIMP_BORDL RecName: Full=Ribosome maturation factor rimP gi|201084138|gb|ACH93729.1| uncharacterized conserved protein [Borrelia duttonii Ly] Length = 143 Score = 41.9 bits (97), Expect = 0.048, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 58/150 (38%), Gaps = 17/150 (11%) Query: 24 DISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 +I +I+ V + ++I+ +QI + + D C +L + I +L + Sbjct: 9 EIYDLIKDVTYLLGISIIEINTFRRRDEFKIQIVLYKSDNFSVDMLC-DLHKMI--LLKL 65 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E +++ + LE+S+PGI+R + +F + G + + E Sbjct: 66 EAVLKYNVSLEISTPGINRKIKSDREFKIFEGKKIKLML-------------NNDFEEGF 112 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + ++ I + ++ A+L Sbjct: 113 ILRAERDGFIFKTEYKEVKILYSNVKKAKL 142 >gi|203288227|ref|YP_002223242.1| hypothetical protein BRE_810 [Borrelia recurrentis A1] gi|259585731|sp|B5RQD7|RIMP_BORRA RecName: Full=Ribosome maturation factor rimP gi|201085447|gb|ACH95021.1| uncharacterized conserved protein [Borrelia recurrentis A1] Length = 143 Score = 41.5 bits (96), Expect = 0.058, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 59/150 (39%), Gaps = 17/150 (11%) Query: 24 DISSVIQPVIEEMSFRSVQIS-LLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV 82 +I +I+ V + ++I+ + +QI + + D C +L + I +L + Sbjct: 9 EIYDLIKDVTYLLGISIIEINTFRKRDEFKIQIVLYKSDNFSVDMLC-DLHKMI--LLKL 65 Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142 E +++ + LE+S+PGI+R + +F + G + + E Sbjct: 66 EAVLKYNVSLEISTPGINRKIKSDREFKIFEGKKIKLML-------------NNDFEEGF 112 Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARL 172 + ++ I + ++ A+L Sbjct: 113 ILRAERDGFIFKTEYKKVKILYSNVKKAKL 142 >gi|313678839|ref|YP_004056579.1| hypothetical protein MBOVPG45_0800 [Mycoplasma bovis PG45] gi|312950794|gb|ADR25389.1| conserved hypothetical protein [Mycoplasma bovis PG45] Length = 148 Score = 41.1 bits (95), Expect = 0.067, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 57/140 (40%), Gaps = 8/140 (5%) Query: 32 VIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYR 91 ++ + + LL+E LL+ +E + L+ EEL++ I+ +D ++ Sbjct: 7 LVNKFGNTIADVKLLKEDGLLI---LEVTASSTDLKAIEELTKLINEYIDSLDVELDFDS 63 Query: 92 LEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRG 151 L VSSPG + G ++ ++ + G+++ + L+ +G Sbjct: 64 LSVSSPGFKLD-YETDELGNHIGEIIDVKLNQNVNKLDSYTGELLEDDDESILLKWNCKG 122 Query: 152 EKDMNELQIAISFDSLLSAR 171 + ++ I ++ AR Sbjct: 123 QF----RKVRIEKSNIKKAR 138 >gi|152965408|ref|YP_001361192.1| hypothetical protein Krad_1440 [Kineococcus radiotolerans SRS30216] gi|189038696|sp|A6W7Y9|RIMP_KINRD RecName: Full=Ribosome maturation factor rimP gi|151359925|gb|ABS02928.1| protein of unknown function DUF150 [Kineococcus radiotolerans SRS30216] Length = 208 Score = 41.1 bits (95), Expect = 0.071, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 6/83 (7%) Query: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGF- 143 + E Y LEVSSPG+DRP+ + R G +V + + L+ +++ E G Sbjct: 78 LGEAPYTLEVSSPGVDRPLTTPRHWSRARGRLVRAVLTDGTA----LLVRVVSVDEAGVH 133 Query: 144 -FLEKEKRGEKDMNELQIAISFD 165 LE + K + D Sbjct: 134 GTLEPQMVKGKPPRAKDVGAPRD 156 >gi|149412623|ref|XP_001510424.1| PREDICTED: similar to platelet-derived growth factor receptor beta [Ornithorhynchus anatinus] Length = 1325 Score = 38.1 bits (87), Expect = 0.65, Method: Composition-based stats. Identities = 13/100 (13%), Positives = 31/100 (31%), Gaps = 1/100 (1%) Query: 38 FRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSP 97 V++ + E L+ F + D + + + L + G L S Sbjct: 617 LTLVRVKVNEGGRYTLRAFHDDDVQEFSFHLQINVPAKVVE-LTESHPSSGEQILTCRSQ 675 Query: 98 GIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMG 137 G+ +P V + ++ ++ + + G Sbjct: 676 GMPQPQVTWFTCSDFKRTILRVVDEGPIQEEHQHVDIRSG 715 >gi|225619364|ref|YP_002720590.1| hypothetical protein BHWA1_00421 [Brachyspira hyodysenteriae WA1] gi|225214183|gb|ACN82917.1| hypothetical protein BHWA1_00421 [Brachyspira hyodysenteriae WA1] Length = 189 Score = 37.7 bits (86), Expect = 0.85, Method: Composition-based stats. Identities = 15/131 (11%), Positives = 41/131 (31%), Gaps = 4/131 (3%) Query: 22 AGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 + + I+ V+EE + + + + N + + + +++ C E ++ I + Sbjct: 40 EALLFNGIKDVLEENNIYLLDLKVRAISDNKKVYAVIFKKKESVSHTHCIETTRKIQDCI 99 Query: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 EG Y + VSS G + + + + + + + Sbjct: 100 KSNGYDEGDYTITVSSAGFRWKF--NDRYELFEDMPIKIKYRSGEEFI-TAYAMLKKSED 156 Query: 141 TGFFLEKEKRG 151 + Sbjct: 157 DYIIITVTDED 167 >gi|213022853|ref|ZP_03337300.1| hypothetical protein Salmonelentericaenterica_09628 [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 41 Score = 37.7 bits (86), Expect = 0.85, Method: Composition-based stats. Identities = 7/47 (14%), Positives = 15/47 (31%), Gaps = 8/47 (17%) Query: 128 KQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 ++K G I + E + E + ++ A L+ Sbjct: 1 RRKWQGIIKAVDGEMITVTVEGKDEV--------FALSNIQKANLVP 39 >gi|157121197|ref|XP_001659871.1| hypothetical protein AaeL_AAEL009269 [Aedes aegypti] gi|108874656|gb|EAT38881.1| conserved hypothetical protein [Aedes aegypti] Length = 1310 Score = 36.5 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 14/131 (10%), Positives = 45/131 (34%), Gaps = 2/131 (1%) Query: 45 LLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMV 104 L ++ L I+ G ++SQ I L +++ + L S + + Sbjct: 450 LTSKRRKPLVIY--GKTGAGKSVLVAKISQNIHTWLPDSHLVLRYTNLTAMSSDVTSLLG 507 Query: 105 RKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISF 164 ++ + V + + +++ +++ + + + + Sbjct: 508 SITEQISVLVKNVPTRCHHTIESYSDALKQLIESTKQQITILIDSVDSLRDLDELDWLPL 567 Query: 165 DSLLSARLIVT 175 + L + +L++T Sbjct: 568 ELLENVKLVLT 578 >gi|255078408|ref|XP_002502784.1| predicted protein [Micromonas sp. RCC299] gi|226518050|gb|ACO64042.1| predicted protein [Micromonas sp. RCC299] Length = 298 Score = 36.5 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 21/156 (13%), Positives = 41/156 (26%), Gaps = 19/156 (12%) Query: 38 FRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSS 96 + E K + + I D D + E LEV+S Sbjct: 141 LEIFSYKVSAERKRIYISIDAVNDKFGSPTLDQLGAVSRTYNTVLEEKGFPDDVALEVAS 200 Query: 97 PGIDRPMVRKSDFLRWNGHVVACEI-----VLSSGDKQKLIGKIMGTSET---GFFLEKE 148 PG +R + + R+ + + + + + E F L Sbjct: 201 PGAERQLRLPLELERFRDLTMKVTYAARAEEDGAEGTRTKVLDVEDIDEDGSPTFKLADV 260 Query: 149 KRGE----------KDMNELQIAISFDSLLSARLIV 174 + K + ++ + + A L V Sbjct: 261 EENRPQAKKGQGMNKKQRDWRLKLDVGDISKANLYV 296 >gi|328709917|ref|XP_003244104.1| PREDICTED: hypothetical protein LOC100571273 [Acyrthosiphon pisum] Length = 618 Score = 36.1 bits (82), Expect = 2.6, Method: Composition-based stats. Identities = 21/139 (15%), Positives = 47/139 (33%), Gaps = 11/139 (7%) Query: 50 NLLLQIFVERDDGNMTLRDCE-ELSQAISPILDVENIIEGHYR-LEVSSPG----IDRPM 103 +++ +RDD + C +++ A+ + + LE S +D + Sbjct: 481 RWTVRLMCDRDDATIQCLTCALDVADAVPSAWSLLDPFASFAELLECVSYEPDVLLDYLI 540 Query: 104 VRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAIS 163 +S+FL + ++ + + G + L R + Sbjct: 541 SEESNFLPYALRILKTACRDA---RCFFKSCGSGLDDAMVLL-IRLRLKMLRLHENHVFP 596 Query: 164 FDSLLSARLIVT-DELLRA 181 ++ + A+LI DEL Sbjct: 597 YNVVPIAKLIQRCDELYTE 615 >gi|53793952|ref|YP_112405.1| DNA primase [uncultured bacterium] gi|114881172|ref|YP_758713.1| TraC DNA primase and ssDNA binding protein [Pseudomonas aeruginosa] gi|168998426|ref|YP_001687703.1| DNA primase TraC1 [Birmingham IncP-alpha plasmid] gi|136172|sp|P27189|TRAC4_ECOLX RecName: Full=DNA primase traC; AltName: Full=Replication primase gi|42791|emb|CAA42455.1| traC-1 [Escherichia coli] gi|53136988|emb|CAG30896.1| DNA primase [uncultured bacterium] gi|53794381|gb|AAU93732.1| TraC1 [Integration vector pJK202] gi|114703583|emb|CAK12725.1| TraC DNA primase and ssDNA binding protein [Pseudomonas aeruginosa] gi|157277527|tpe|CAJ85719.1| TPA: TraC DNA primase and ssDNA binding protein [Birmingham IncP-alpha plasmid] gi|262117783|dbj|BAI47875.1| TraC1 [Helper vector pRH210] gi|262117827|dbj|BAI47918.1| TraC1 [Helper vector pRH220] gi|317109811|gb|ADU90750.1| TraC DNA primase; long form [uncultured bacterium] gi|317109897|gb|ADU90835.1| DNA primase TraC1 [uncultured bacterium] gi|317109980|gb|ADU90917.1| DNA primase traC Replication primase [uncultured bacterium] Length = 1061 Score = 36.1 bits (82), Expect = 2.8, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 40/130 (30%), Gaps = 9/130 (6%) Query: 70 EELSQAISPILDVENIIEGHYRLEVSSPGIDRPM---VRKSDFLRWNGHVVACEIVLSSG 126 L + ++ E + R E++S + + + G + Sbjct: 217 SRLDRDLAHPFGSEGYAKEELRAEIASMILGDELGIGHDPGQHAAYVGSWIKALQEDPLE 276 Query: 127 ------DKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLR 180 D +K+ ++ + + ++ + + D + + DEL+ Sbjct: 277 IFRAAADAEKIQDFVLAFEQKQIQEQTTQQAIEPAQGATMEQQQDQVARPAIAPADELIA 336 Query: 181 ASLNNYGSYA 190 +L Y + A Sbjct: 337 QTLRMYRAGA 346 >gi|255026352|ref|ZP_05298338.1| hypothetical protein LmonocytFSL_08425 [Listeria monocytogenes FSL J2-003] Length = 41 Score = 35.7 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFV 57 + + +++ P+ +E+ V I+ +E L+IF+ Sbjct: 2 SKVLEQVEAIVAPITDELQLELVDIAFEKEGPNWFLRIFI 41 >gi|205373422|ref|ZP_03226226.1| hypothetical protein Bcoam_09035 [Bacillus coahuilensis m4-4] Length = 58 Score = 35.7 bits (81), Expect = 3.4, Method: Composition-based stats. Identities = 4/39 (10%), Positives = 17/39 (43%) Query: 19 MGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFV 57 + + + P+++E+ V + ++E + + + Sbjct: 2 SKITDLVEQLAPPILDELKLELVDVEYVKEGSNWFYVCI 40 >gi|329937165|ref|ZP_08286764.1| ATP-dependent RNA helicase [Streptomyces griseoaurantiacus M045] gi|329303446|gb|EGG47332.1| ATP-dependent RNA helicase [Streptomyces griseoaurantiacus M045] Length = 506 Score = 35.4 bits (80), Expect = 4.6, Method: Composition-based stats. Identities = 23/164 (14%), Positives = 51/164 (31%), Gaps = 24/164 (14%) Query: 10 KYEPR------IFGDMGLAGDISSVIQPVIEEMSFRS---VQISLLEEKNLLLQ----IF 56 + EPR + LA +++ + P + + R V L + L+ + Sbjct: 134 RAEPRYPLALVLVPTRELAQQVTAALTPYAKALGLRLTTVVGGVSLGRQASALRGGAEVV 193 Query: 57 VERD---DGNMTLRDCEELSQAISPILDVENIIEGHYRL--EVSSPGIDRP----MVRKS 107 V + DC S A++ +LD + + + + RP ++ + Sbjct: 194 VATPGRLKDLIDRDDCRLDSVALT-VLDEADQMTDMGFMPQVTALLDRTRPDGQRLLFSA 252 Query: 108 DFLRWNGHVVACEIVLS-SGDKQKLIGKIMGTSETGFFLEKEKR 150 R +V + G + ++ E + Sbjct: 253 TLDRNVDRLVRRYLHDPVVHSVDPAAGAVTTMEHHVLHVDDEDK 296 >gi|170028504|ref|XP_001842135.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167876257|gb|EDS39640.1| conserved hypothetical protein [Culex quinquefasciatus] Length = 1337 Score = 35.0 bits (79), Expect = 5.0, Method: Composition-based stats. Identities = 15/131 (11%), Positives = 44/131 (33%), Gaps = 2/131 (1%) Query: 45 LLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMV 104 L ++ L I+ G ++S + L ++ + L S + + Sbjct: 472 LTSKRRKPLVIY--GKTGAGKSALVAKISHNVHTWLPESQLVLRYANLTTLSSDVTSLLG 529 Query: 105 RKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISF 164 ++ L V + + + +++ +S+ + + + + Sbjct: 530 SITEQLSVLVKGVPTRCNHTIESYSEALLELIESSKQQVTILIDSVDSLRDLDDLGWLPL 589 Query: 165 DSLLSARLIVT 175 + L + +LI+T Sbjct: 590 ELLDNVKLILT 600 >gi|145256871|ref|XP_001401544.1| hypothetical protein ANI_1_1624184 [Aspergillus niger CBS 513.88] gi|134058453|emb|CAK47940.1| hypothetical protein An04g01760 [Aspergillus niger] Length = 771 Score = 35.0 bits (79), Expect = 6.0, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 27/85 (31%), Gaps = 2/85 (2%) Query: 2 ESTHFLHSKYEPRIFGDMGLAGDISSVIQ--PVIEEMSFRSVQISLLEEKNLLLQIFVER 59 + +H PRI D ++ + Q P ++ + N L+ + Sbjct: 133 QVSHTRDHPSNPRILEDAAVSPLRREMAQGMPYVQAHGQDLEDLESAPCANPTLREESQS 192 Query: 60 DDGNMTLRDCEELSQAISPILDVEN 84 + + C S +S I + Sbjct: 193 ALRSKSQASCMTQSSQVSSIFRGTD 217 >gi|332027366|gb|EGI67449.1| Bardet-Biedl syndrome 4 protein-like protein [Acromyrmex echinatior] Length = 398 Score = 34.6 bits (78), Expect = 7.0, Method: Composition-based stats. Identities = 13/91 (14%), Positives = 29/91 (31%), Gaps = 3/91 (3%) Query: 99 IDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNEL 158 I + ++ R E + D + G+ E + + Sbjct: 108 IAKSLLIMGSHKRAIDAYAEAEKISILPDWEIYHGREAYVKLNQLQ---EGKKYFKRSTE 164 Query: 159 QIAISFDSLLSARLIVTDELLRASLNNYGSY 189 I ++ ARL + D+++ + N Y + Sbjct: 165 LTKIELPNIDLARLYLLDDMIPEARNAYTAA 195 >gi|332520307|ref|ZP_08396769.1| Glutathione synthase [Lacinutrix algicola 5H-3-7-4] gi|332043660|gb|EGI79855.1| Glutathione synthase [Lacinutrix algicola 5H-3-7-4] Length = 346 Score = 34.6 bits (78), Expect = 8.0, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 35/89 (39%), Gaps = 8/89 (8%) Query: 7 LHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIF------VERD 60 +H+ P ++ +++P + + V I ++ +K + + +F V D Sbjct: 251 IHAGGRPETVKMTEKIKKLAEIVKPKLVQDGMFLVGIDIVGDKLMEINVFSPGGLNVTGD 310 Query: 61 DGNMTLRDCEELSQAISPILDVENIIEGH 89 + C + +AI + ++ G+ Sbjct: 311 MYDADF--CTPVIKAIEKKVYFRDMYSGY 337 >gi|167760011|ref|ZP_02432138.1| hypothetical protein CLOSCI_02383 [Clostridium scindens ATCC 35704] gi|167662304|gb|EDS06434.1| hypothetical protein CLOSCI_02383 [Clostridium scindens ATCC 35704] Length = 947 Score = 34.2 bits (77), Expect = 9.7, Method: Composition-based stats. Identities = 13/103 (12%), Positives = 32/103 (31%), Gaps = 17/103 (16%) Query: 13 PRIFGDMGLAGDISSVIQPVIE-EMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEE 71 R+ G+ ++ I+ V+ V + + + + D +++ + E Sbjct: 212 DRLVVKEGIEQRLTDSIEDVLALAEGLLIVDV--IGGEPINFSQSFACPDCGISIDEIEP 269 Query: 72 LSQAISPIL--------------DVENIIEGHYRLEVSSPGID 100 S + + E++I L +S I Sbjct: 270 RSFSFNNPFGACPECFGLGYKMEFDEDLIIPDKNLSISEGAIT 312 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.310 0.140 0.345 Lambda K H 0.267 0.0426 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,271,063,974 Number of Sequences: 14124377 Number of extensions: 36457730 Number of successful extensions: 156256 Number of sequences better than 10.0: 1870 Number of HSP's better than 10.0 without gapping: 1669 Number of HSP's successfully gapped in prelim test: 201 Number of HSP's that attempted gapping in prelim test: 151794 Number of HSP's gapped (non-prelim): 1895 length of query: 192 length of database: 4,842,793,630 effective HSP length: 131 effective length of query: 61 effective length of database: 2,992,500,243 effective search space: 182542514823 effective search space used: 182542514823 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 77 (34.2 bits)