RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780789|ref|YP_003065202.1| hypothetical protein
CLIBASIA_03400 [Candidatus Liberibacter asiaticus str. psy62]
         (192 letters)



>1ib8_A Conserved protein SP14.3; nucleic acid binding protein,
           ribosomal protein, essential gene, structural genomics;
           NMR {Streptococcus pneumoniae} (A:1-91)
          Length = 91

 Score = 74.4 bits (183), Expect = 1e-14
 Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 5/85 (5%)

Query: 20  GLAGDISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISP 78
            +   +  V++PVIE   F  V I   +   +++L IFV++ +G +TL D  +L++ ISP
Sbjct: 9   TIVELVREVVEPVIE-APFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEMISP 66

Query: 79  ILDVENI--IEGHYRLEVSSPGIDR 101
           +LD          Y LE++SPG++R
Sbjct: 67  VLDTIKPDPFPEQYFLEITSPGLER 91


>1ib8_A Conserved protein SP14.3; nucleic acid binding protein,
           ribosomal protein, essential gene, structural genomics;
           NMR {Streptococcus pneumoniae} (A:92-164)
          Length = 73

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 4/73 (5%)

Query: 102 PMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIA 161
           P+  K       G  +   +  +   ++   G ++   E    +E   +  K      + 
Sbjct: 1   PLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEEDELTMEYMDKTRKK----TVQ 56

Query: 162 ISFDSLLSARLIV 174
           I +  +  ARL V
Sbjct: 57  IPYSLVSKARLAV 69


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
          acyl-carrier-protein, beta-ketoacyl reductase,
          beta-ketoacyl synthase, dehydratase; 4.00A
          {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
          Length = 120

 Score = 31.3 bits (71), Expect = 0.084
 Identities = 7/25 (28%), Positives = 15/25 (60%), Gaps = 1/25 (4%)

Query: 36 MSFRSVQISLLEEKNLLLQIFVERD 60
          MS  S+ + ++  + + +Q+ V RD
Sbjct: 6  MSIESL-VEVVFYRGMTMQVAVPRD 29


>1pv5_A Hypothetical protein YWQG; structural genomics, PSI, protein
           structure initiative, midwest center for structural
           genomics, MCSG; 1.75A {Bacillus subtilis} (A:)
          Length = 264

 Score = 27.4 bits (60), Expect = 1.4
 Identities = 11/52 (21%), Positives = 18/52 (34%)

Query: 52  LLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPM 103
           +LQ ++   D    L   +   Q    ++  ENI+E    L      I    
Sbjct: 85  ILQFYISVHDDVYGLNFDDRCEQKNFRVIYFENIVENDDELVSDFSFIGTGE 136


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.318    0.137    0.382 

Gapped
Lambda     K      H
   0.267   0.0640    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,402,558
Number of extensions: 60436
Number of successful extensions: 113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 11
Length of query: 192
Length of database: 4,956,049
Length adjustment: 84
Effective length of query: 108
Effective length of database: 2,116,429
Effective search space: 228574332
Effective search space used: 228574332
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.0 bits)