HHsearch alignment for GI: 254780790 and conserved domain: COG2246
>COG2246 Predicted membrane protein [Function unknown].
Probab=99.91 E-value=9.9e-24 Score=139.70 Aligned_cols=123 Identities=19% Similarity=0.256 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHHHH
Q ss_conf 789999999999999999999999995-711389999999999999999988672057880679999----999999999
Q gi|254780790|r 2 KQCIIFIINIVVVFFIDVMGFFILMKC-GADPFYSRIFSIAVAFLVTWIPSRLFIFLKLRRKSFLET----VRYGVMYFM 76 (129)
Q Consensus 2 rql~rF~ivG~~~~~vd~~i~~ll~~~-g~~~~~A~~ia~~~a~~~nf~lnr~~tF~~~~~~~~~~~----~~~~~~~~~ 76 (129)
T Consensus 11 ~~~lrF~~VG~~~t~V~~~~~~ll~~~~~~~~~~A~~~a~~~~ii~sf~~N~~wTF~~~~~~~~~~~~~~~~~~~~~~~l 90 (139)
T COG2246 11 SRLLRFAIVGGLGTLVDFAVLWLLVKALGVPYALANAIAYEAAIIFSFVLNRRWTFRDRSTSRLHEFLRRLVKFNVAVLL 90 (139)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999964342999999999999998145658899999999999999999741267527887699999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999621230089999999999999999997679986767
Q gi|254780790|r 77 LSILNYAFYVKLLLTFQGLQPLLATVLSAVSSMLFVFLLYIRFMTRRVY 125 (129)
Q Consensus 77 ~~~~~~~l~~~l~~~~~~~~~~~a~~i~~~~~~~~nf~~~k~~vFrk~~ 125 (129)
T Consensus 91 g~~~~~~~~~~l~~~~~~~~~~~a~~i~~~~~~i~nfi~s~~-v~~~~~ 138 (139)
T COG2246 91 GLAVLLLVLYILTLGLLLVAYLIANLIGIVAAFIINFLLSKR-VFWRVR 138 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-EEEECC
T ss_conf 999999999999875100899999999999999999998872-464167