Query gi|254780790|ref|YP_003065203.1| hypothetical protein CLIBASIA_03405 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 129
No_of_seqs 107 out of 1040
Neff 7.8
Searched_HMMs 33803
Date Wed Jun 1 13:55:07 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780790.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3ce2_A Putative peptidase; st 6.9 1.2E+02 0.0034 10.7 0.0 24 96-119 11-34 (38)
2 >3h0d_A CTSR; protein DNA comp 5.5 1.3E+02 0.0038 10.5 -0.4 23 105-127 35-57 (82)
3 >1rh5_B Preprotein translocase 4.8 1.8E+02 0.0054 9.7 3.6 35 47-81 14-48 (74)
4 >3h9v_A P2X purinoceptor; puri 4.1 2.2E+02 0.0066 9.3 1.2 24 103-126 45-68 (74)
5 >2waq_A DNA-directed RNA polym 3.5 2.7E+02 0.008 8.8 3.8 25 32-56 51-75 (79)
6 >2zxe_A Na, K-ATPase alpha sub 3.3 2.9E+02 0.0086 8.7 4.3 42 65-108 110-151 (154)
7 >2wwb_B SEC61gamma, protein tr 3.0 3.3E+02 0.0098 8.4 2.8 24 57-80 23-46 (68)
8 >2k1a_A Integrin alpha-IIB; si 2.7 3.7E+02 0.011 8.1 1.8 25 99-123 15-39 (42)
9 >2nr9_A Protein GLPG homolog; 2.6 3.9E+02 0.012 8.0 3.1 29 97-125 165-193 (196)
10 >2cvc_A Cytochrome CC3, high-m 2.4 4.3E+02 0.013 7.8 0.0 22 2-23 5-26 (98)
No 1
>>3ce2_A Putative peptidase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.60A {Chlamydophila abortus S26} (A:123-160)
Probab=6.90 E-value=1.2e+02 Score=10.74 Aligned_cols=24 Identities=33% Similarity=0.348 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 089999999999999999997679
Q gi|254780790|r 96 QPLLATVLSAVSSMLFVFLLYIRF 119 (129)
Q Consensus 96 ~~~~a~~i~~~~~~~~nf~~~k~~ 119 (129)
.+.+++.++.-+...+.|++.|.|
T Consensus 11 e~~~~~~Lssp~L~~Y~FYLeKiF 34 (38)
T 3ce2_A 11 ESLIAQHLSAPCLAPYRFYLEKIF 34 (38)
T ss_dssp HHHHHHHHHCSTTGGGHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 999999860905467799999999
No 2
>>3h0d_A CTSR; protein DNA complex, winged HTH domain, 4-helix bundle, DNA tandem repeat, transcription/DNA complex; HET: DNA; 2.40A {Bacillus stearothermophilus} (A:1-76,A:150-155)
Probab=5.54 E-value=1.3e+02 Score=10.52 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999767998676763
Q gi|254780790|r 105 AVSSMLFVFLLYIRFMTRRVYFI 127 (129)
Q Consensus 105 ~~~~~~~nf~~~k~~vFrk~~~~ 127 (129)
.|+..=.||+++.+|+-.|.|++
T Consensus 35 ~CvPSQINYVl~TRFT~e~GY~V 57 (82)
T 3h0d_A 35 RCVPSQINYVINTRFTLERGYIV 57 (82)
T ss_dssp TSCTHHHHHHHHHHSSGGGTEEE
T ss_pred CCCCCCCCEEECCCCCCCCCEEE
T ss_conf 96741161665255158888599
No 3
>>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} (B:)
Probab=4.80 E-value=1.8e+02 Score=9.72 Aligned_cols=35 Identities=14% Similarity=0.054 Sum_probs=17.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998867205788067999999999999999999
Q gi|254780790|r 47 TWIPSRLFIFLKLRRKSFLETVRYGVMYFMLSILN 81 (129)
Q Consensus 47 nf~lnr~~tF~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (129)
+|+-...=..+.-+++.++|+.+-.-+..++.++-
T Consensus 14 eF~~~~~r~lk~~~KPd~~Ef~~iak~~~iGf~im 48 (74)
T 1rh5_B 14 EFIEECRRVWLVLKKPTKDEYLAVAKVTALGISLL 48 (74)
T ss_dssp HHHHHHHHHHHSEECCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999816998999999999999999999
No 4
>>3h9v_A P2X purinoceptor; purinergic receptor, ION channel, closed state, APO state, ION transport, ionic channel, receptor, transmembrane, transport; HET: NAG; 3.10A {Danio rerio} PDB: 3i5d_A* (A:1-27,A:310-356)
Probab=4.06 E-value=2.2e+02 Score=9.25 Aligned_cols=24 Identities=0% Similarity=0.138 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999976799867676
Q gi|254780790|r 103 LSAVSSMLFVFLLYIRFMTRRVYF 126 (129)
Q Consensus 103 i~~~~~~~~nf~~~k~~vFrk~~~ 126 (129)
....|-.+.-|.+.|+-.+|+-|+
T Consensus 45 aTvlCDlIlLy~lkKr~~Yr~kKf 68 (74)
T 3h9v_A 45 VNVICDWIVLTFMKRKQHYKEQKY 68 (74)
T ss_dssp HHHHHHHHCC--------------
T ss_pred HHHHHHHHHHHHHCHHHHHHHHCC
T ss_conf 999999999984121456666273
No 5
>>2waq_A DNA-directed RNA polymerase RPO1N subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2wb1_A 2pmz_A 3hkz_A (A:487-514,A:600-650)
Probab=3.49 E-value=2.7e+02 Score=8.84 Aligned_cols=25 Identities=4% Similarity=0.185 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 3899999999999999999886720
Q gi|254780790|r 32 PFYSRIFSIAVAFLVTWIPSRLFIF 56 (129)
Q Consensus 32 ~~~A~~ia~~~a~~~nf~lnr~~tF 56 (129)
...+..+.-+--++.+|++||-+|-
T Consensus 51 ~~a~~fl~~iqrl~~~~L~~~GFSi 75 (79)
T 2waq_A 51 EYGKWLMDNLFRVFIRFVELQGFTM 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 3557899999999999988741222
No 6
>>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 1mo7_A 1mo8_A* 1q3i_A (A:87-170,A:269-338)
Probab=3.29 E-value=2.9e+02 Score=8.68 Aligned_cols=42 Identities=5% Similarity=-0.047 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 99999999999999999999999996212300899999999999
Q gi|254780790|r 65 LETVRYGVMYFMLSILNYAFYVKLLLTFQGLQPLLATVLSAVSS 108 (129)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~i~~~~~ 108 (129)
.++.+++....+...+- ....++. ...+....+-..++..++
T Consensus 110 dr~~~~~~~~~l~~~~~-~f~~~~~-~~~~~~~a~~~aisllVa 151 (154)
T 2zxe_A 110 EHFIHIITGVAVFLGVS-FFILSLI-LGYSWLEAVIFLIGIIVA 151 (154)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHH-TTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHH-HCCHHHHHHHHHHHHHHH
T ss_conf 99999999999999999-9988887-333088999999999987
No 7
>>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} (B:)
Probab=2.95 E-value=3.3e+02 Score=8.39 Aligned_cols=24 Identities=4% Similarity=-0.100 Sum_probs=12.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 578806799999999999999999
Q gi|254780790|r 57 LKLRRKSFLETVRYGVMYFMLSIL 80 (129)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~ 80 (129)
+.-+++.++|+.+-.-...++.++
T Consensus 23 k~c~KP~~kEf~kia~a~~iGf~i 46 (68)
T 2wwb_B 23 KRCTKPDRKEFQKIAMATAIGFAI 46 (68)
T ss_dssp HHCCCCCTHHHHHHHHHSSHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 992499989999999999984999
No 8
>>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A (A:)
Probab=2.69 E-value=3.7e+02 Score=8.14 Aligned_cols=25 Identities=8% Similarity=0.126 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999976799867
Q gi|254780790|r 99 LATVLSAVSSMLFVFLLYIRFMTRR 123 (129)
Q Consensus 99 ~a~~i~~~~~~~~nf~~~k~~vFrk 123 (129)
.|-+.+..+.++..|.+.|.==|||
T Consensus 15 ~s~i~GlL~Lali~~~L~K~GFFKR 39 (42)
T 2k1a_A 15 VGVLGGLLLLTILVLAMWKVGFFKR 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999999999999999998273247
No 9
>>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein, X-RAY crystallography; HET: PA6 PQE; 2.20A {Haemophilus influenzae 86-028np} (A:)
Probab=2.57 E-value=3.9e+02 Score=8.01 Aligned_cols=29 Identities=7% Similarity=-0.042 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999999997679986767
Q gi|254780790|r 97 PLLATVLSAVSSMLFVFLLYIRFMTRRVY 125 (129)
Q Consensus 97 ~~~a~~i~~~~~~~~nf~~~k~~vFrk~~ 125 (129)
...+.+.+.+++....+...++...||.-
T Consensus 165 ~~~~hl~G~l~G~~~~~~~~~~~~~~~~~ 193 (196)
T 2nr9_A 165 GNAAHISGLIVGLIWGFIDSKLRKNSLEL 193 (196)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99999999999999999998536776788
No 10
>>2cvc_A Cytochrome CC3, high-molecular-weight cytochrome C precursor; electron transport; HET: HEM; 2.00A {Desulfovibrio vulgaris} (A:1-43,A:98-152)
Probab=2.38 E-value=4.3e+02 Score=7.80 Aligned_cols=22 Identities=18% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7899999999999999999999
Q gi|254780790|r 2 KQCIIFIINIVVVFFIDVMGFF 23 (129)
Q Consensus 2 rql~rF~ivG~~~~~vd~~i~~ 23 (129)
|.++|+.-|=....++..+.||
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~ 26 (98)
T 2cvc_A 5 RTLLRWAGVLAATAIIGVGGFW 26 (98)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 0279999999999999742054
Done!