RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780790|ref|YP_003065203.1| hypothetical protein
CLIBASIA_03405 [Candidatus Liberibacter asiaticus str. psy62]
         (129 letters)



>gnl|CDD|177477 PHA02695, PHA02695, hypothetical protein; Provisional.
          Length = 725

 Score = 26.9 bits (59), Expect = 1.6
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 5/40 (12%)

Query: 13  VVFFIDVMGFFILMKCGADPFYSRIFSIAVAFLVTWIPSR 52
           VV F+D +    L+  GADPF S        F  +WI  R
Sbjct: 367 VVDFLDTVPLRTLLAVGADPFASD-----YVFSTSWINDR 401


>gnl|CDD|181716 PRK09236, PRK09236, dihydroorotase; Reviewed.
          Length = 444

 Score = 26.0 bits (58), Expect = 2.6
 Identities = 11/20 (55%), Positives = 11/20 (55%)

Query: 24  ILMKCGADPFYSRIFSIAVA 43
           IL KCG  PF  R F   VA
Sbjct: 397 ILYKCGWSPFEGRTFRSRVA 416


>gnl|CDD|183120 PRK11404, PRK11404, putative PTS system  transporter subunits IIBC;
           Provisional.
          Length = 482

 Score = 26.0 bits (57), Expect = 2.9
 Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 12/103 (11%)

Query: 15  FFIDVMGFFILMKCGADPFYSRIFSIAVAFLVTWIPSRLFIFLKLRRKSFLETVRYGVMY 74
           F I +MG +I       P      + A AFLV ++ +   +        FL  V  G   
Sbjct: 186 FMIPIMGAYIASSIADKP------AFAPAFLVCYLANDKALLGTQSGAGFLGAVVLG--- 236

Query: 75  FMLSILNYAFYVKLLLTFQGLQPLLATVL-SAVSSMLFVFLLY 116
             L+I  + F+ + +   + LQPLL ++L   V+ ++F  L Y
Sbjct: 237 --LAIGYFVFWFRKVRLGKALQPLLGSMLIPFVTLLVFGVLTY 277


>gnl|CDD|183572 PRK12523, PRK12523, RNA polymerase sigma factor; Reviewed.
          Length = 172

 Score = 25.6 bits (56), Expect = 3.7
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 8/57 (14%)

Query: 62  KSFLETVRYGVM--YFMLSILNYAFYVKLLLTFQGLQP------LLATVLSAVSSML 110
           ++FL  V  G+M  +F  + L  A+  +L L  +  QP      L+   L A+  +L
Sbjct: 61  RAFLAAVAKGLMFDHFRRAALEQAYLAELALVPEAEQPSPEEQHLILEDLKAIDRLL 117


>gnl|CDD|184006 PRK13367, PRK13367, protocatechuate 4,5-dioxygenase; Provisional.
          Length = 420

 Score = 25.5 bits (56), Expect = 4.3
 Identities = 7/19 (36%), Positives = 13/19 (68%)

Query: 59  LRRKSFLETVRYGVMYFML 77
           +RR+ +   + YGV +F+L
Sbjct: 358 IRRRDWRGLIHYGVSFFLL 376


>gnl|CDD|115749 pfam07115, DUF1371, Protein of unknown function (DUF1371).  This
          family consists of several hypothetical bacterial
          proteins of around 110 residues in length. The function
          of this family is unknown but members seem to be
          specific to Borrelia burgdorferi (Lyme disease
          spirochete).
          Length = 110

 Score = 24.8 bits (54), Expect = 7.5
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 8/38 (21%)

Query: 52 RLFIFLKLRRKSFLETVRYGVMYFMLSILNYAFYVKLL 89
          RLFIFLK  R S      +G        L+Y+  +KLL
Sbjct: 29 RLFIFLKTLRGSLSYAPNWG--------LDYSLLLKLL 58


>gnl|CDD|152269 pfam11833, DUF3353, Protein of unknown function (DUF3353).  This
           family of proteins are functionally uncharacterized.
           This protein is found in bacteria and eukaryotes.
           Proteins in this family are typically between 205 to 258
           amino acids in length.
          Length = 193

 Score = 24.5 bits (54), Expect = 8.0
 Identities = 11/62 (17%), Positives = 27/62 (43%)

Query: 53  LFIFLKLRRKSFLETVRYGVMYFMLSILNYAFYVKLLLTFQGLQPLLATVLSAVSSMLFV 112
              FL  + + F   + + +   ++ +L  +    LL  F    PL    + ++ ++L +
Sbjct: 127 CIYFLNRKGRRFGRALLWSLGGLVVGLLLGSLLAVLLPPFILPGPLSPEQIQSLFALLLL 186

Query: 113 FL 114
           +L
Sbjct: 187 WL 188


>gnl|CDD|181433 PRK08455, fliL, flagellar basal body-associated protein FliL;
          Reviewed.
          Length = 182

 Score = 24.3 bits (53), Expect = 9.0
 Identities = 7/28 (25%), Positives = 15/28 (53%)

Query: 5  IIFIINIVVVFFIDVMGFFILMKCGADP 32
          ++ II  VVV  + ++G   ++  G+  
Sbjct: 19 LLIIIIGVVVLLLLIVGVIAMLLMGSKE 46


>gnl|CDD|183943 PRK13279, arnT, 4-amino-4-deoxy-L-arabinose transferase;
           Provisional.
          Length = 552

 Score = 24.5 bits (54), Expect = 9.2
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 37  IFSIAV-AFLVTWIPSRLFIFLKLRRKSFLETVRYGVMYFMLSILNYA 83
           +FS  + A LV W+  RL+   + RR + L  + Y  ++ +  I  YA
Sbjct: 89  VFSTLLSALLVYWLALRLW---RDRRTALLAALIYLSLFLVYGIGTYA 133


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.345    0.153    0.464 

Gapped
Lambda     K      H
   0.267   0.0744    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,130,106
Number of extensions: 130811
Number of successful extensions: 811
Number of sequences better than 10.0: 1
Number of HSP's gapped: 804
Number of HSP's successfully gapped: 113
Length of query: 129
Length of database: 5,994,473
Length adjustment: 83
Effective length of query: 46
Effective length of database: 4,201,009
Effective search space: 193246414
Effective search space used: 193246414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 51 (23.4 bits)