RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780790|ref|YP_003065203.1| hypothetical protein
CLIBASIA_03405 [Candidatus Liberibacter asiaticus str. psy62]
         (129 letters)



>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical
          hairpin torroid, super beta sandwich, carbohydrase
          family GH15; 2.10A
          {Thermoanaerobacteriumthermosaccharolyticum}
          (A:487-562)
          Length = 76

 Score = 24.7 bits (54), Expect = 4.8
 Identities = 8/11 (72%), Positives = 8/11 (72%)

Query: 63 SFLETVRYGVM 73
          SFLE VR GV 
Sbjct: 49 SFLELVRLGVK 59


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.345    0.153    0.464 

Gapped
Lambda     K      H
   0.267   0.0723    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 963,232
Number of extensions: 37455
Number of successful extensions: 158
Number of sequences better than 10.0: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 22
Length of query: 129
Length of database: 4,956,049
Length adjustment: 77
Effective length of query: 52
Effective length of database: 2,353,064
Effective search space: 122359328
Effective search space used: 122359328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 50 (23.1 bits)