RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780790|ref|YP_003065203.1| hypothetical protein
CLIBASIA_03405 [Candidatus Liberibacter asiaticus str. psy62]
         (129 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
          acyl-carrier-protein, beta-ketoacyl reductase,
          beta-ketoacyl synthase, dehydratase; 4.00A
          {Saccharomyces cerevisiae}
          Length = 2006

 Score = 31.5 bits (71), Expect = 0.058
 Identities = 6/31 (19%), Positives = 12/31 (38%), Gaps = 3/31 (9%)

Query: 39 SIAVAFLVTWIPSRLFIFLKLRRKSFLETVR 69
          S+    LV   P+  F      ++ F + + 
Sbjct: 15 SLEHVLLV---PTASFFIASQLQEQFNKILP 42



 Score = 25.7 bits (56), Expect = 3.3
 Identities = 8/38 (21%), Positives = 12/38 (31%), Gaps = 12/38 (31%)

Query: 74  YFM-LSILNYAFYVKLLLTFQGLQPLLATVLSAVSSML 110
           YF  L  L Y  Y            L+  ++   +  L
Sbjct: 169 YFEELRDL-YQTY----------HVLVGDLIKFSAETL 195


>3nyh_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase,
           bromide, chloride, I MPD, thiocyanate ION; HET: SEP HEM
           NAG MAN; 1.77A {Bos taurus} PDB: 2ips_A* 2nqx_A* 2pum_A*
           2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A* 3gcj_A*
           3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3erh_A* 3faq_A*
           3fnl_A* 2z5z_A* 2o86_A* ...
          Length = 595

 Score = 28.6 bits (63), Expect = 0.40
 Identities = 16/119 (13%), Positives = 42/119 (35%), Gaps = 8/119 (6%)

Query: 7   FIINIVVVFFIDVMGFFILMKCGADPFYSRIFSIAVAFLVTWIPSRLFIFLKLRRKSFLE 66
           ++  ++       +  +       DP  S +F+ A  F    +PS +    +  +    E
Sbjct: 312 YLPIVLGSEMQKWIPPYQGYNNSVDPRISNVFTFAFRFGHMEVPSTVSRLDENYQPWGPE 371

Query: 67  TVRYGVMYFMLSILNYAFYVKLLLTFQGLQPLLATVLSAVSSMLFVFLLYIRFMTRRVY 125
                     L +    F    ++   G+ PL+  +L+  S ++    +    +  +++
Sbjct: 372 AE--------LPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTSELRNKLF 422


>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation,
           blood coagulation, oxidoreductase, blood
           coagulation,oxidoreductase; HET: U10; 3.60A
           {Synechococcus SP}
          Length = 291

 Score = 25.3 bits (55), Expect = 4.2
 Identities = 7/92 (7%), Positives = 24/92 (26%), Gaps = 2/92 (2%)

Query: 34  YSRIFSIAVAF--LVTWIPSRLFIFLKLRRKSFLETVRYGVMYFMLSILNYAFYVKLLLT 91
           ++    I  A   L+ ++       L              +   + ++  +  Y+  L+ 
Sbjct: 64  WAEFLGIPTAAVGLLGFLGVLALAVLPDGLPLVKRWRWPALFGLVSAMTAFEMYMLYLMV 123

Query: 92  FQGLQPLLATVLSAVSSMLFVFLLYIRFMTRR 123
               Q  +    + +       +  +      
Sbjct: 124 AVLRQFCMYCTTAIILVAGLGLVTVLGHRWLD 155


>2gj1_A Lactoperoxidase, LPO; oxidoreductase, metal-binding protein; HET:
           NAG MAN HEM; 2.30A {Bos taurus} PDB: 3bxi_A* 2ips_A*
           2nqx_A* 2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A*
           3gc1_A* 3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3erh_A* 3faq_A*
           2gjm_A* 3fnl_A* 2z5z_A* 2o86_A* ...
          Length = 583

 Score = 24.7 bits (53), Expect = 6.2
 Identities = 15/119 (12%), Positives = 42/119 (35%), Gaps = 8/119 (6%)

Query: 7   FIINIVVVFFIDVMGFFILMKCGADPFYSRIFSIAVAFLVTWIPSRLFIFLKLRRKSFLE 66
           ++  ++       +  +       DP  S +F+ A  F    +PS     +    +++  
Sbjct: 300 YLPIVLGSEMQKWIPPYQGYNNSVDPRISNVFTFAFRFGHMEVPS----TVSRLDENYQP 355

Query: 67  TVRYGVMYFMLSILNYAFYVKLLLTFQGLQPLLATVLSAVSSMLFVFLLYIRFMTRRVY 125
                     L +    F    ++   G+ PL+  +L+  S ++    +    +  +++
Sbjct: 356 WGPEAE----LPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTSELRNKLF 410


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.345    0.153    0.464 

Gapped
Lambda     K      H
   0.267   0.0497    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,104,875
Number of extensions: 44649
Number of successful extensions: 198
Number of sequences better than 10.0: 1
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 29
Length of query: 129
Length of database: 5,693,230
Length adjustment: 82
Effective length of query: 47
Effective length of database: 3,705,222
Effective search space: 174145434
Effective search space used: 174145434
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 51 (24.0 bits)