HHsearch alignment for GI: 254780791 and conserved domain: COG1107
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair].
Probab=96.19 E-value=0.19 Score=33.04 Aligned_cols=221 Identities=19% Similarity=0.315 Sum_probs=129.5
Q ss_pred CCHHHHHHHHHHH----HHHCC-CCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCC--CCCCCEEE
Q ss_conf 2299999999999----74001-71899999705435688862799987489479999973521058668--14598899
Q gi|254780791|r 15 YSVSELSYHLKHI----VESNL-SHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNKIEFL--PEEGIEFL 87 (529)
Q Consensus 15 ~svs~l~~~i~~~----l~~~~-~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~~~~~--~~~G~~v~ 87 (529)
T Consensus 191 Y~~~~~~ke~~r~~i~did~~ig~tV~I~GeV~qik--qT~GPTVFtltDetg~i~aAAFe~--aGvRAyP~ievGdiV~ 266 (715)
T COG1107 191 YREVQVEKELPRTLIDDLDEMIGKTVRIEGEVTQIK--QTSGPTVFTLTDETGAIWAAAFEE--AGVRAYPEIEVGDIVE 266 (715)
T ss_pred CHHHHHHHHCCCCCHHHHHHHCCCEEEEEEEEEEEE--ECCCCEEEEEECCCCCEEHHHHCC--CCCCCCCCCCCCCEEE
T ss_conf 101112210453107777753486699977899999--758987999806888442666435--7743489987785699
Q ss_pred EEEEEEEECCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHH-HHHHHH
Q ss_conf 9999667528843799999710168007999999999976540122610016310265289998478425899-999986
Q gi|254780791|r 88 VIGKITTFPGSSKYQIIIESLIPSGSGTLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIR-DILQRI 166 (529)
Q Consensus 88 ~~g~~~~y~~~g~~ql~v~~i~~~g~G~l~~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~-D~~~~~ 166 (529)
T Consensus 267 ViG~V~--~r~g~lQiE~~~me~L-~G~e---a~eVr~rid~a--ld~--~Ae-P--~~~~~lvdse~lE~L~p~m~~vA 333 (715)
T COG1107 267 VIGEVT--RRDGRLQIEIEAMEKL-TGDE---AAEVRKRIDEA--LDR--RAE-P--ADVGFLVDSEVLEALKPDMVDVA 333 (715)
T ss_pred EEEEEE--ECCCCEEEEEHHHHHH-HCCH---HHHHHHHHHHH--HHH--CCC-C--CCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 987775--0478278762435775-1851---89999999999--862--038-7--53455567799987518899999
Q ss_pred HH--C--CC-EEEEE-EECCCCC-----------------------------------------CCHHHHHHHHHHHHHH
Q ss_conf 30--5--97-58999-7210011-----------------------------------------1103679999999974
Q gi|254780791|r 167 SC--R--FP-LRVII-FPVKVQG-----------------------------------------DECPKEIANAILQLNT 199 (529)
Q Consensus 167 ~~--r--~p-~~~~~-~p~~vQG-----------------------------------------~~a~~~i~~ai~~~~~ 199 (529)
T Consensus 334 k~irrAV~egRPIiiRHHaDaDG~~agvAlE~AilplI~d~~~d~DAeyh~~KRrPskAPfYeleDvtrDl~~aLED~~R 413 (715)
T COG1107 334 KEIRRAVLEGRPIIIRHHADADGYCAGVALEKAILPLIEDVHPDEDAEYHLFKRRPSKAPFYELEDVTRDLNFALEDAHR 413 (715)
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHH
T ss_conf 99999873478369964567665200266899889999872798024567763386668730377666468899999996
Q ss_pred HCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCC
Q ss_conf 1003576777589995168884442200769999999748904885205777525898864123
Q gi|254780791|r 200 LKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADLR 263 (529)
Q Consensus 200 ~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~R 263 (529)
T Consensus 414 hGq-----KlPL~VlvDnGsTeEDipA~~------~~k~Ygi~ivVVDHH~Pde~vvD~yvd~H 466 (715)
T COG1107 414 HGQ-----KLPLLVLVDNGSTEEDIPAIK------QLKAYGIDIVVVDHHYPDEAVVDEYVDVH 466 (715)
T ss_pred CCC-----CCCEEEEECCCCCCCCCHHHH------HHHHCCCCEEEECCCCCCCHHHHHHHHHC
T ss_conf 087-----565699976898644627898------88754997899717889603334566631