HHsearch alignment for GI: 254780791 and conserved domain: COG1107

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair].
Probab=96.19  E-value=0.19  Score=33.04  Aligned_cols=221  Identities=19%  Similarity=0.315  Sum_probs=129.5

Q ss_pred             CCHHHHHHHHHHH----HHHCC-CCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCC--CCCCCEEE
Q ss_conf             2299999999999----74001-71899999705435688862799987489479999973521058668--14598899
Q gi|254780791|r   15 YSVSELSYHLKHI----VESNL-SHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNKIEFL--PEEGIEFL   87 (529)
Q Consensus        15 ~svs~l~~~i~~~----l~~~~-~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~~~~~--~~~G~~v~   87 (529)
T Consensus       191 Y~~~~~~ke~~r~~i~did~~ig~tV~I~GeV~qik--qT~GPTVFtltDetg~i~aAAFe~--aGvRAyP~ievGdiV~  266 (715)
T COG1107         191 YREVQVEKELPRTLIDDLDEMIGKTVRIEGEVTQIK--QTSGPTVFTLTDETGAIWAAAFEE--AGVRAYPEIEVGDIVE  266 (715)
T ss_pred             CHHHHHHHHCCCCCHHHHHHHCCCEEEEEEEEEEEE--ECCCCEEEEEECCCCCEEHHHHCC--CCCCCCCCCCCCCEEE
T ss_conf             101112210453107777753486699977899999--758987999806888442666435--7743489987785699


Q ss_pred             EEEEEEEECCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHH-HHHHHH
Q ss_conf             9999667528843799999710168007999999999976540122610016310265289998478425899-999986
Q gi|254780791|r   88 VIGKITTFPGSSKYQIIIESLIPSGSGTLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIR-DILQRI  166 (529)
Q Consensus        88 ~~g~~~~y~~~g~~ql~v~~i~~~g~G~l~~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~-D~~~~~  166 (529)
T Consensus       267 ViG~V~--~r~g~lQiE~~~me~L-~G~e---a~eVr~rid~a--ld~--~Ae-P--~~~~~lvdse~lE~L~p~m~~vA  333 (715)
T COG1107         267 VIGEVT--RRDGRLQIEIEAMEKL-TGDE---AAEVRKRIDEA--LDR--RAE-P--ADVGFLVDSEVLEALKPDMVDVA  333 (715)
T ss_pred             EEEEEE--ECCCCEEEEEHHHHHH-HCCH---HHHHHHHHHHH--HHH--CCC-C--CCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             987775--0478278762435775-1851---89999999999--862--038-7--53455567799987518899999


Q ss_pred             HH--C--CC-EEEEE-EECCCCC-----------------------------------------CCHHHHHHHHHHHHHH
Q ss_conf             30--5--97-58999-7210011-----------------------------------------1103679999999974
Q gi|254780791|r  167 SC--R--FP-LRVII-FPVKVQG-----------------------------------------DECPKEIANAILQLNT  199 (529)
Q Consensus       167 ~~--r--~p-~~~~~-~p~~vQG-----------------------------------------~~a~~~i~~ai~~~~~  199 (529)
T Consensus       334 k~irrAV~egRPIiiRHHaDaDG~~agvAlE~AilplI~d~~~d~DAeyh~~KRrPskAPfYeleDvtrDl~~aLED~~R  413 (715)
T COG1107         334 KEIRRAVLEGRPIIIRHHADADGYCAGVALEKAILPLIEDVHPDEDAEYHLFKRRPSKAPFYELEDVTRDLNFALEDAHR  413 (715)
T ss_pred             HHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHH
T ss_conf             99999873478369964567665200266899889999872798024567763386668730377666468899999996


Q ss_pred             HCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCC
Q ss_conf             1003576777589995168884442200769999999748904885205777525898864123
Q gi|254780791|r  200 LKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADLR  263 (529)
Q Consensus       200 ~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~R  263 (529)
T Consensus       414 hGq-----KlPL~VlvDnGsTeEDipA~~------~~k~Ygi~ivVVDHH~Pde~vvD~yvd~H  466 (715)
T COG1107         414 HGQ-----KLPLLVLVDNGSTEEDIPAIK------QLKAYGIDIVVVDHHYPDEAVVDEYVDVH  466 (715)
T ss_pred             CCC-----CCCEEEEECCCCCCCCCHHHH------HHHHCCCCEEEECCCCCCCHHHHHHHHHC
T ss_conf             087-----565699976898644627898------88754997899717889603334566631