HHsearch alignment for GI: 254780791 and conserved domain: COG1570
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair].
Probab=100.00 E-value=0 Score=1028.29 Aligned_cols=436 Identities=41% Similarity=0.667 Sum_probs=416.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEE
Q ss_conf 88986229999999999974001718999997054356888627999874894799999735210586681459889999
Q gi|254780791|r 10 LDHPEYSVSELSYHLKHIVESNLSHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVI 89 (529)
Q Consensus 10 ~~~~~~svs~l~~~i~~~l~~~~~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~ 89 (529)
T Consensus 1 ~~~~~~sVSeln~~ik~llE~~~~~V~v~GEISn~t-~~~sgH~YFtLKD~~A~i~c~mf~~~~~~l~f~p~eG~~V~v~ 79 (440)
T COG1570 1 SPEKILSVSELNDYIKRLLERDLGQVWVRGEISNFT-RPASGHLYFTLKDERAQIRCVMFKGNNRRLKFRPEEGMQVLVR 79 (440)
T ss_pred CCCCEECHHHHHHHHHHHHHHCCCEEEEEEEECCCC-CCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCEEEEE
T ss_conf 998705199999999999984078599999963776-6888607999716771689999747000268786679889999
Q ss_pred EEEEEECCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHC
Q ss_conf 99667528843799999710168007999999999976540122610016310265289998478425899999986305
Q gi|254780791|r 90 GKITTFPGSSKYQIIIESLIPSGSGTLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISCR 169 (529)
Q Consensus 90 g~~~~y~~~g~~ql~v~~i~~~g~G~l~~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r 169 (529)
T Consensus 80 G~is~Y~~rG~YQi~~~~~~p~G~G~L~~~~E~lK~kL~aEGlFd~~~KkpLP~~p~~IGVITS~tgAairDIl~~~~rR 159 (440)
T COG1570 80 GKISLYEPRGDYQIVAESMEPAGLGALYLAFEQLKAKLAAEGLFDPERKKPLPFFPKKIGVITSPTGAALRDILHTLSRR 159 (440)
T ss_pred EEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 77888769885699983278287258999999999999867786832269999998868998187058999999998753
Q ss_pred CC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEEC
Q ss_conf 97-58999721001111036799999999741003576777589995168884442200769999999748904885205
Q gi|254780791|r 170 FP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIG 248 (529)
Q Consensus 170 ~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIG 248 (529)
T Consensus 160 ~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~------~DvlIVaRGGGSiEDLW~FNdE~vaRAi~~s~iPvISAVG 233 (440)
T COG1570 160 FPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGD------VDVLIVARGGGSIEDLWAFNDEIVARAIAASRIPVISAVG 233 (440)
T ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCC------CCEEEEECCCCHHHHHHCCCHHHHHHHHHHCCCCEEEECC
T ss_conf 8887299982144178709999999998634589------9889991686348888615809999999807998584066
Q ss_pred CCCCCHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHH
Q ss_conf 7775258988641237772145676332346777669999988877899888999985567765304--97889867888
Q gi|254780791|r 249 HETDWTLADYAADLRAPTPTGAAEMAVPVKEHLQSSLINLEARLNNIIIRLIKYKINTLNSLLKALP--NSDQTLSCSRY 326 (529)
Q Consensus 249 HE~D~Tl~D~VAD~Ra~TPTaAAElavp~~~EL~~~L~~l~~RL~~a~~~~l~~~~q~L~~l~r~L~--~~~~~L~~~~Q 326 (529)
T Consensus 234 HEtD~tL~DfVAD~RApTPTaAAE~~vP~~~el~~~l~~~~~rL~~~~~~~l~~~~~~l~~l~~~l~~~~p~~~l~~~~q 313 (440)
T COG1570 234 HETDFTLADFVADLRAPTPTAAAELVVPDSAELLQQLDQLQRRLHRALRRLLDQKKQRLEHLARRLQFRSPERLLSEQQQ 313 (440)
T ss_pred CCCCCCHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 67775287764313479966878885878999999999999999999999999999999999987764497889989999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78886545689999998756889999984101134688999999999999999998876555678888776777778875
Q gi|254780791|r 327 RLDRLPRELEHNLEIIIFRKYRHFNHIINRIKSDFLIHNIQKNRQHILEKQQHIEQIVKQHLRYIFLEKKEKIAILHMLR 406 (529)
Q Consensus 327 rLd~~~~rL~~~l~~~l~~~~~~l~~~~~rL~~~~~~~~l~~~r~~L~~~q~~L~q~~~~~l~~~~~~~~~~~~~l~~l~ 406 (529)
T Consensus 314 ~ld~~~~rL~~~l~~~~~~~~~~~~~l~~rl~~----------------------------------------------- 346 (440)
T COG1570 314 RLDELAIRLRRALENQLALKKQRLERLTQRLNP----------------------------------------------- 346 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------------
T ss_conf 999999999999999999988888777777778-----------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCEEEEECCCCCEECCHHHCCCCCEEE
Q ss_conf 02688999999999999999999999999999999999999887169677731461999848988957778929998699
Q gi|254780791|r 407 EQTKNRIFYLHTHIKKLITRIEFILSHKIKSCHTSVSITTRILQSFAYKNTLKRGYTSIQDTNNNFITQKRNLATKTRIL 486 (529)
Q Consensus 407 ~~~~~~l~~~~~~l~~l~~rL~~~~~~~L~~~~~rL~~l~~~L~slsP~~~L~RGYaiv~~~~GkiI~s~~~l~~gd~i~ 486 (529)
T Consensus 347 -----~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~l~~l~~~L~~Lsp~~~L~RGyavv~~~~~~~i~s~~~l~~gd~l~ 421 (440)
T COG1570 347 -----QIQRQQQRLQQLERRLDKALRRQLKRKRERLEALVEQLESLSPLATLARGYAVVRKENGQVIKSVADLKAGDRLT 421 (440)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCEEEEECCCCCEECCHHHCCCCCEEE
T ss_conf -----898888888889988889999999999999999999997179145664744899826877540186669999899
Q ss_pred EEEECEEEEEEEEECCCC
Q ss_conf 999110999999505788
Q gi|254780791|r 487 INFFDGQANAIVINKAPP 504 (529)
Q Consensus 487 i~l~DG~v~a~V~~k~~~ 504 (529)
T Consensus 422 ~~~~DG~v~a~v~~~~~~ 439 (440)
T COG1570 422 LRLADGEVDAEVKGVQTE 439 (440)
T ss_pred EEECCCCEEEEEEECCCC
T ss_conf 997377189999621468