HHsearch alignment for GI: 254780791 and conserved domain: COG4085

>COG4085 Predicted RNA-binding protein, contains TRAM domain [General function prediction only].
Probab=94.84  E-value=0.17  Score=33.56  Aligned_cols=75  Identities=19%  Similarity=0.295  Sum_probs=63.0

Q ss_pred             CEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCC-----CCCCCCCEEEEEEEEEEECCCCEEEEEEEEE
Q ss_conf             18999997054356888627999874894799999735210586-----6814598899999966752884379999971
Q gi|254780791|r   34 HVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNKIE-----FLPEEGIEFLVIGKITTFPGSSKYQIIIESL  108 (529)
Q Consensus        34 ~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~~~-----~~~~~G~~v~~~g~~~~y~~~g~~ql~v~~i  108 (529)
T Consensus        53 ~v~vkg~V~~~~n~~~~gi~~l~lndgtGti~vva~~~tee~l~~n~~~p~~~eGe~veVtGrv~~y--rG~~eVkvnq~  130 (204)
T COG4085          53 EVTVKGEVTADQNAIGGGIESLVLNDGTGTITVVASRSTEETLELNEGMPVTVEGEIVEVTGRVEEY--RGSSEVKVNQP  130 (204)
T ss_pred             CCEEEEEEEEEECCCCCCEEEEEEECCCCCEEEEEECCHHHHHHHCCCCCCCCCCCEEEEEEEEEEE--CCCCEEECCCC
T ss_conf             5322148975310123665999997798748999906736768644788732267589998888771--79730310684


Q ss_pred             EE
Q ss_conf             01
Q gi|254780791|r  109 IP  110 (529)
Q Consensus       109 ~~  110 (529)
T Consensus       131 ~d  132 (204)
T COG4085         131 ND  132 (204)
T ss_pred             CC
T ss_conf             43