HHsearch alignment for GI: 254780791 and conserved domain: COG4085
>COG4085 Predicted RNA-binding protein, contains TRAM domain [General function prediction only].
Probab=94.84 E-value=0.17 Score=33.56 Aligned_cols=75 Identities=19% Similarity=0.295 Sum_probs=63.0
Q ss_pred CEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCC-----CCCCCCCEEEEEEEEEEECCCCEEEEEEEEE
Q ss_conf 18999997054356888627999874894799999735210586-----6814598899999966752884379999971
Q gi|254780791|r 34 HVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNKIE-----FLPEEGIEFLVIGKITTFPGSSKYQIIIESL 108 (529)
Q Consensus 34 ~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~~~-----~~~~~G~~v~~~g~~~~y~~~g~~ql~v~~i 108 (529)
T Consensus 53 ~v~vkg~V~~~~n~~~~gi~~l~lndgtGti~vva~~~tee~l~~n~~~p~~~eGe~veVtGrv~~y--rG~~eVkvnq~ 130 (204)
T COG4085 53 EVTVKGEVTADQNAIGGGIESLVLNDGTGTITVVASRSTEETLELNEGMPVTVEGEIVEVTGRVEEY--RGSSEVKVNQP 130 (204)
T ss_pred CCEEEEEEEEEECCCCCCEEEEEEECCCCCEEEEEECCHHHHHHHCCCCCCCCCCCEEEEEEEEEEE--CCCCEEECCCC
T ss_conf 5322148975310123665999997798748999906736768644788732267589998888771--79730310684
Q ss_pred EE
Q ss_conf 01
Q gi|254780791|r 109 IP 110 (529)
Q Consensus 109 ~~ 110 (529)
T Consensus 131 ~d 132 (204)
T COG4085 131 ND 132 (204)
T ss_pred CC
T ss_conf 43