HHsearch alignment for GI: 254780791 and conserved domain: PRK00484
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed.
Probab=94.39 E-value=0.6 Score=28.60 Aligned_cols=234 Identities=19% Similarity=0.240 Sum_probs=139.7
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC---CCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCC
Q ss_conf 99888888888986229999999999974001---718999997054356888627999874894799999735210586
Q gi|254780791|r 1 MNPFSQKNSLDHPEYSVSELSYHLKHIVESNL---SHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNKIE 77 (529)
Q Consensus 1 ~~~~~~~~~~~~~~~svs~l~~~i~~~l~~~~---~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~~~ 77 (529)
T Consensus 22 ~~pyp~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~V~vaGrv~~~R~--~Gk~~F~~lrD~~g~iQ~~~~~~~~~~~~ 96 (491)
T PRK00484 22 INPYPNDFER---THTSAELQAKYADLEKEELEALIEVSVAGRVMLKRV--MGKASFATIQDGSGRIQLYVSKDDVGEEA 96 (491)
T ss_pred CCCCCCCCCC---CCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEC--CCCEEEEEEEECCCCEEEEEECCCCCHHH
T ss_conf 9999997858---666999999875138533467988999987840505--69819999996994589999667589999
Q ss_pred ----CCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEEC------------CCCHHHHHH---------------------
Q ss_conf ----6814598899999966752884379999971016------------800799999---------------------
Q gi|254780791|r 78 ----FLPEEGIEFLVIGKITTFPGSSKYQIIIESLIPS------------GSGTLLTAL--------------------- 120 (529)
Q Consensus 78 ----~~~~~G~~v~~~g~~~~y~~~g~~ql~v~~i~~~------------g~G~l~~~~--------------------- 120 (529)
T Consensus 97 ~~~~~~l~~gd~i~v~G~v~-~t~~Gel~v~~~~~~iLsksl~plP~k~~g~~d~e~r~r~RyLDLi~n~~~~~~f~~Rs 175 (491)
T PRK00484 97 YEAFKKLDLGDIIGVEGTLF-KTKTGELSVKVTELTLLTKSLRPLPDKFHGLSDQETRYRQRYLDLIVNEESRETFRKRS 175 (491)
T ss_pred HHHHHCCCCCCEEEEEEEEE-ECCCCEEEEECCEEEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99996068666898787998-65885166403317993168889985444556755631133021027999999999999
Q ss_pred ---HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEE--EE------CCCCCCCHHHH
Q ss_conf ---99999765401226100163102652899984784258999999863059758999--72------10011110367
Q gi|254780791|r 121 ---EKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVII--FP------VKVQGDECPKE 189 (529)
Q Consensus 121 ---e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~--~p------~~vQG~~a~~~ 189 (529)
T Consensus 176 ~ii~~iR~~l~~~gF~EVeT----P-----i-L~~~~gGA~ArpF~t~~n-~l~~~~yL~~SPqLylk~l~vgG~ervfe 244 (491)
T PRK00484 176 KIISAIRRFLDNRGFLEVET----P-----M-LQPIPGGAAARPFITHHN-ALDIDLYLRIAPELYLKRLIVGGFERVFE 244 (491)
T ss_pred HHHHHHHHHHHHCCEEEEEC----C-----C-CCCCCCCCCCCCCCCCCC-CCCCCEEECCCHHHHHHHHHHCCCHHHEE
T ss_conf 99999999998676899867----8-----7-766688756676556445-66855442068789877787627202222
Q ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHH--CCCEEEEEECCCCCCH
Q ss_conf 9999999974100357677758999516888444220076999999974--8904885205777525
Q gi|254780791|r 190 IANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIAN--SSIPIISAIGHETDWT 254 (529)
Q Consensus 190 i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~--~~iPVisgIGHE~D~T 254 (529)
T Consensus 245 I~r~FR~E~~~--~rH~pEFT~lE~e~af~d~~dvm~l~E~li-~~v~~~v~g~~~~~~~~~~idl~ 308 (491)
T PRK00484 245 IGRNFRNEGID--TRHNPEFTMIEFYQAYADYNDMMDLTEELI-RHLAKEVLGTTKITYGGTEIDFG 308 (491)
T ss_pred HHHHHHCCCCC--CCCCCCEEEEEEEEECCCHHHHHHHHHHHH-HHHHHHHCCCCEEEECCEEECCC
T ss_conf 48766257554--341840102136772479999999999999-99999961995673287763378