HHsearch alignment for GI: 254780791 and conserved domain: PRK04036

>PRK04036 DNA polymerase II small subunit; Validated.
Probab=90.88  E-value=1.6  Score=24.76  Aligned_cols=70  Identities=19%  Similarity=0.258  Sum_probs=44.6

Q ss_pred             CEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCC--CCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEE
Q ss_conf             189999970543568886279998748947999997352105--866814598899999966752884379999971
Q gi|254780791|r   34 HVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNK--IEFLPEEGIEFLVIGKITTFPGSSKYQIIIESL  108 (529)
Q Consensus        34 ~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~--~~~~~~~G~~v~~~g~~~~y~~~g~~ql~v~~i  108 (529)
T Consensus       148 ev~IIGmV~d~r-~tknG~~~~~lED~tG~i~vli~k~~~~~~~~a~~ll~DeVIgv~G~~---s~~g~~-~f~~~i  219 (497)
T PRK04036        148 EVSIIGMVSDIR-STKNGHKIVELEDPTGTFSVLIMKDREDLGELAEDLLPDEVIGVKGTL---SGDGPL-MFADEI  219 (497)
T ss_pred             CEEEEEEECCCE-ECCCCCEEEEEECCCCEEEEEEECCCHHHHHHHHHCCCCCEEEEEEEE---CCCCCE-EEEEEC
T ss_conf             089999975413-136774799998789839999947837877777624577578999998---699877-998404