HHsearch alignment for GI: 254780791 and conserved domain: PRK04036
>PRK04036 DNA polymerase II small subunit; Validated.
Probab=90.88 E-value=1.6 Score=24.76 Aligned_cols=70 Identities=19% Similarity=0.258 Sum_probs=44.6
Q ss_pred CEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCC--CCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEE
Q ss_conf 189999970543568886279998748947999997352105--866814598899999966752884379999971
Q gi|254780791|r 34 HVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNK--IEFLPEEGIEFLVIGKITTFPGSSKYQIIIESL 108 (529)
Q Consensus 34 ~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~--~~~~~~~G~~v~~~g~~~~y~~~g~~ql~v~~i 108 (529)
T Consensus 148 ev~IIGmV~d~r-~tknG~~~~~lED~tG~i~vli~k~~~~~~~~a~~ll~DeVIgv~G~~---s~~g~~-~f~~~i 219 (497)
T PRK04036 148 EVSIIGMVSDIR-STKNGHKIVELEDPTGTFSVLIMKDREDLGELAEDLLPDEVIGVKGTL---SGDGPL-MFADEI 219 (497)
T ss_pred CEEEEEEECCCE-ECCCCCEEEEEECCCCEEEEEEECCCHHHHHHHHHCCCCCEEEEEEEE---CCCCCE-EEEEEC
T ss_conf 089999975413-136774799998789839999947837877777624577578999998---699877-998404