HHsearch alignment for GI: 254780791 and conserved domain: cd04478
>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle dependent manner in response to DNA dam
Probab=93.46 E-value=0.87 Score=27.16 Aligned_cols=79 Identities=22% Similarity=0.294 Sum_probs=60.2
Q ss_pred CEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCC---CCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEE
Q ss_conf 189999970543568886279998748947999997352105---86681459889999996675288437999997101
Q gi|254780791|r 34 HVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNK---IEFLPEEGIEFLVIGKITTFPGSSKYQIIIESLIP 110 (529)
Q Consensus 34 ~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~---~~~~~~~G~~v~~~g~~~~y~~~g~~ql~v~~i~~ 110 (529)
T Consensus 1 ~V~~VG~V~~v~~--~~t~~~y~idDgTG~i~~~~w~~~~~~~~~~~~~i~~g~YVrV~G~lk~f--~~~~~I~~~~irp 76 (95)
T cd04478 1 QVTLVGVVRNVEE--QSTNITYTIDDGTGTIEVRQWLDDDNDDSSEVEPIEEGTYVRVFGNLKSF--QGKKSIMAFSIRP 76 (95)
T ss_pred CEEEEEEEEEEEE--CCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEEE--CCEEEEEEEEEEE
T ss_conf 9899999998777--25579999987987399999637787642224433269899999998002--8913799999999
Q ss_pred CC-CCHH
Q ss_conf 68-0079
Q gi|254780791|r 111 SG-SGTL 116 (529)
Q Consensus 111 ~g-~G~l 116 (529)
T Consensus 77 v~d~NEi 83 (95)
T cd04478 77 VTDFNEV 83 (95)
T ss_pred ECCCCHH
T ss_conf 3797577