HHsearch alignment for GI: 254780791 and conserved domain: cd04490
>cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit. PolII is a family D DNA polymerase, having a 3-prime to 5-prime exonuclease activity. P. abyssi PolII is heterodimeric. The large subunit appears to be the polymerase, and the small subunit may be the exonuclease. The small subunit contains a calcineurin-like phosphatase superfamily domain C-terminal to this OB-fold domain.
Probab=93.59 E-value=0.42 Score=29.97 Aligned_cols=67 Identities=24% Similarity=0.340 Sum_probs=45.2
Q ss_pred EEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCC---CEE-EEEEEEEEECCCCEEEEEEEEE
Q ss_conf 8999997054356888627999874894799999735210586681459---889-9999966752884379999971
Q gi|254780791|r 35 VCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNKIEFLPEEG---IEF-LVIGKITTFPGSSKYQIIIESL 108 (529)
Q Consensus 35 ~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G---~~v-~~~g~~~~y~~~g~~ql~v~~i 108 (529)
T Consensus 2 v~iIGmV~d~r-~TknG~~~~~lED~TG~i~vl~~kd~~~~--~~~~~~ll~DeVIGV~G~---~s~~g~~-~f~~~i 72 (79)
T cd04490 2 VSIIGMVNDVR-STKNGHRIVELEDTTGRITVLLTKDKEEL--FEEAEDILPDEVIGVSGT---VSKDGGL-IFADEI 72 (79)
T ss_pred EEEEEEECCCE-ECCCCCEEEEEECCCCEEEEEEECCCHHH--HHHHHCCCCCCEEEEEEE---ECCCCCE-EEEECC
T ss_conf 69999993327-61688789999879998999996893677--566752568878999999---8789988-999712