HHsearch alignment of GI: 254780791 and MMDB domain: 3fhw_A_

>3fhw_A (A:) Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein structure initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=93.79  E-value=0.45  Score=29.15  Aligned_cols=76  Identities=14%  Similarity=0.099  Sum_probs=53.3

Q ss_pred             CEEEEEEECC---CCCCCCCCEEE--EEE------ECC------CCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             1899999705---43568886279--998------748------947999997352105866814598899999966752
Q gi|254780791|r   34 HVCVRGEISG---YRGIHSSGHAY--FSL------KDN------HSRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITTFP   96 (529)
Q Consensus        34 ~~~v~gEis~---~~~~~~sGH~Y--f~l------kd~------~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~y~   96 (529)
                      .|-+.|-|..   ++. -.+|..|  |+|      +|.      ..-++|++|...+..+.. ++-|+.|+|.|++....
T Consensus         3 ~v~l~G~i~~dp~~~~-t~~G~~~~~f~la~~~~~~~~~~~~~~t~~~~v~~~g~~A~~~~~-l~kG~~V~V~G~l~~~~   80 (115)
T 3fhw_A            3 TLELSARVLECGAXRH-TPAGLPALELLLVHESEVVEAGHPRRVELTISAVALGDLALLLAD-TPLGTEXQVQGFLAPAR   80 (115)
T ss_dssp             EEEEEEEEEEECCCEE-CTTSCEEEEEEEEEEEECCCCC--CEEEEEEEEEEETHHHHHHTT-CCTTCEEEEEEEEEESS
T ss_pred             EEEEEEEECCCCCEEE-CCCCCEEEEEEEEECCEEECCCCCCCEEEEEEEEEEHHHHHHHHH-CCCCCEEEEEEEECCCC
T ss_conf             8999999876863889-899977899999932012048873534499999999488232041-37999999999965266


Q ss_pred             C-CCEEEEEEEEEEEC
Q ss_conf             8-84379999971016
Q gi|254780791|r   97 G-SSKYQIIIESLIPS  111 (529)
Q Consensus        97 ~-~g~~ql~v~~i~~~  111 (529)
                      - ....++.++.|+.-
T Consensus        81 ~~~~~g~i~~~~i~~l   96 (115)
T 3fhw_A           81 KDSVKVKLHLQQARRI   96 (115)
T ss_dssp             TTCSSEEEEEEEEEEC
T ss_pred             CCCCCEEEEEEEEEEE
T ss_conf             8898369998999992